Query 002543
Match_columns 910
No_of_seqs 175 out of 283
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 02:07:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002543.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002543hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04615 Utp14: Utp14 protein; 100.0 3E-136 6E-141 1232.1 52.7 675 143-870 14-734 (735)
2 COG5644 Uncharacterized conser 100.0 8E-116 2E-120 967.5 36.9 654 148-870 188-868 (869)
3 KOG2172 Uncharacterized conser 100.0 9E-114 2E-118 971.3 39.5 646 30-871 8-654 (654)
4 KOG2172 Uncharacterized conser 96.0 0.001 2.2E-08 78.5 -2.0 201 248-452 4-246 (654)
5 PF10175 MPP6: M-phase phospho 84.5 0.69 1.5E-05 44.1 2.5 21 502-522 3-23 (104)
6 KOG4531 M phase phosphoprotein 67.4 3.6 7.8E-05 41.3 2.1 29 501-529 10-38 (165)
7 KOG1832 HIV-1 Vpr-binding prot 60.6 9.2 0.0002 48.1 4.2 11 51-61 1394-1404(1516)
8 PF09026 CENP-B_dimeris: Centr 54.6 4.1 8.9E-05 38.3 0.0 19 106-124 6-24 (101)
9 PF04931 DNA_pol_phi: DNA poly 46.2 34 0.00073 43.4 6.1 6 57-62 632-637 (784)
10 PF10446 DUF2457: Protein of u 43.3 13 0.00027 43.7 1.6 7 756-762 423-429 (458)
11 PF03115 Astro_capsid: Astrovi 32.1 15 0.00033 46.3 0.0 10 148-157 707-716 (787)
12 PF04931 DNA_pol_phi: DNA poly 24.6 76 0.0017 40.3 4.3 7 147-153 730-736 (784)
13 PF05764 YL1: YL1 nuclear prot 20.8 69 0.0015 34.9 2.5 12 43-54 11-22 (240)
No 1
>PF04615 Utp14: Utp14 protein; InterPro: IPR006709 A large ribonuclear protein complex is required for the processing of the small-ribosomal-subunit rRNA - the small-subunit (SSU) processome [, ]. This preribosomal complex contains the U3 snoRNA and at least 40 proteins, which have the following properties: They are nucleolar. They are able to coimmunoprecipitate with the U3 snoRNA and Mpp10 (a protein specific to the SSU processome). They are required for 18S rRNA biogenesis. There appears to be a linkage between polymerase I transcription and the formation of the SSU processome; as some, but not all, of the SSU processome components are required for pre-rRNA transcription initiation. These SSU processome components have been termed t-Utps. They form a pre-complex with pre-18S rRNA in the absence of snoRNA U3 and other SSU processome components. It has been proposed that the t-Utp complex proteins are both rDNA and rRNA binding proteins that are involved in the initiation of pre18S rRNA transcription. Initially binding to rDNA then associating with the 5' end of the nascent pre18S rRNA. The t-Utpcomplex forms the nucleus around which the rest of the SSU processome components, including snoRNA U3, assemble []. From electron microscopy the SSU processome may correspond to the terminal knobs visualized at the 5' ends of nascent 18S rRNA. This entry contains Utp14, a large ribonuclear protein associated with snoRNA U3 [].; GO: 0006364 rRNA processing, 0032040 small-subunit processome
Probab=100.00 E-value=2.8e-136 Score=1232.13 Aligned_cols=675 Identities=40% Similarity=0.581 Sum_probs=477.2
Q ss_pred CCCCchHHHHHHHhhhhCCCCccccccccccccccccCCCCCCCCCCCCCCCCCCccchhhhcccccCCcchhHHHHHHH
Q 002543 143 QDGDNDERHLRMLQGVTGMPSEFFEGKKKKKNVVISEAYPESEFNPTRDVLDGNGQISIDDLLEPLQGKSGYSKLRKRMH 222 (910)
Q Consensus 143 ~d~dd~~~h~~lL~~i~~l~~~~~~~~~r~k~~~~tE~~~esEF~l~~~~~~g~~kl~l~dLl~~l~~~~~~~~lkk~l~ 222 (910)
+++||+++|.+||+.|++|.+....+. +++...+++.+.+|||+|++.+ +.++|+|+|||++|. ++.+..++++|.
T Consensus 14 ~~~~~~~~~~~L~~~i~~l~~~~~~~~-~~~~~~~~~~~~~sef~~~~~~--~~~kl~l~dLl~~l~-~~~~~~~~k~l~ 89 (735)
T PF04615_consen 14 DDEDDEEKHDKLLKAISSLDSKKRKKK-KKRRERIEESGKESEFNLSSSG--ADDKLSLSDLLSSLS-DSSLSKLKKQLK 89 (735)
T ss_pred ccccChHHHHHHHHHHHhccccccccc-cccccccccccCcccccCCccC--ccCcccHHHHHhhhc-chhHHHHHHHHH
Confidence 557789999999999999977754332 2344455566789999998642 234999999999999 889999999999
Q ss_pred HhhhccCcccCCCCchHHHHHHHHHHHHHHHHhhhccHHHHHhhcCCCceeccC-CCCCCCcchhhhhccCCCCCHHHHH
Q 002543 223 QMRKKSTSVLAPLPKPEQEKLERKVVYEQSKKDITKWEPLVKMNREAPSIYFDE-DTNLGFSTVGAIAAGFEPRTEFEKK 301 (910)
Q Consensus 223 ~l~~~~~~l~~PL~k~~qeRieRkaAYe~tkkel~kW~~~Vk~NR~Ae~L~Fp~-~~~~~~~~~~~~~s~~kp~TeLE~e 301 (910)
.+.++..+|++||++++|+||+|+|||++|+++|++|.|||++||+|+||+||+ +......++..+++.|+|.|+||++
T Consensus 90 ~~~~~~~~l~~PL~~~~~~r~~R~~ay~~~k~~~~kW~~~V~~nr~a~~l~Fp~~~~~~~~~~~~~~~~~~~p~t~lE~~ 169 (735)
T PF04615_consen 90 KVSKKKKTLAAPLPKREQERIERKAAYEKTKKELDKWDPTVKRNREAEHLVFPLQKEKPEDSSVASLASKFKPRTELEKE 169 (735)
T ss_pred HhhcccCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCeeeccCCCccccccchhhhhhccCCCCHHHHH
Confidence 998887789999999999999999999999999999999999999999999997 4566678888999999999999999
Q ss_pred HHHHhhhccch-hhhhccchhhhhhccCCHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchhhHHHHhhHHHHHHHHHh
Q 002543 302 MASLVNDDKVK-EAHKQDGSKLLELNKISVEDYLEERNHVAKMRSLLFRHEMKRKRIKKIKSKTYHRLLKKDRLKAASVE 380 (910)
Q Consensus 302 i~~lL~~s~l~-~~~~~~~~e~l~~~~mS~EE~k~Rr~EL~kmR~L~fr~E~KaKRikKIKSK~YhRI~KKek~K~~~k~ 380 (910)
|++||+.+++. .......++.+++++||+||+++||+||++||+||||+|+|||||||||||+|||||||+++|+++++
T Consensus 170 i~~~L~~~~~~~~~~~~~~~e~~~~~~ms~eE~~~r~~el~~~R~L~~~~e~KakR~kKIKSK~yhri~kk~k~k~~~k~ 249 (735)
T PF04615_consen 170 IASILEESGLASDEKKLTEAEELALKKMSLEEAKERRAELAKMRALMFYEEAKAKRIKKIKSKTYHRILKKEKEKEQEKE 249 (735)
T ss_pred HHHHHHHcCCCcchhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcch
Confidence 99999999998 44555678899999999999999999999999999999999999999999999999999999987766
Q ss_pred h----cCCHHHHHHHHHHHHHHHHHHHhcccccCccHHHHHHHHhccccCCHHHHHHHHHHHHHhHHHHHHHhhcCCCCC
Q 002543 381 M----LMDPEAAKEEARKQEFKRAEERMTLKHKNSSRWAKRILKRGLDAQDEGTRAAITEQLQQHALLTRKMKSMKDSSS 456 (910)
Q Consensus 381 ~----e~dpe~a~ee~ek~E~~RA~ERmtLKHkntsKWAK~~~~~G~~~~D~e~R~ai~EQL~~~~eL~~Ki~~~~~~ss 456 (910)
| +.||++|+++++++|++||+|||||||+|||||||+|+++|+++||.++|++|+|||++|++||+||.+..++++
T Consensus 250 ~e~l~~~dpe~a~e~~e~~e~~Ra~ERmtlkHkn~sKWAK~~~~~G~~~~d~~~R~al~eql~~~~eL~~Ki~~~~~~~~ 329 (735)
T PF04615_consen 250 FEELEESDPEAAEEELEKLEKKRAEERMTLKHKNTSKWAKSMLRRGRAKYDEEARQALQEQLRRGEELTRKIEGEDSSDS 329 (735)
T ss_pred HHHHhhcChhhhHHHHHHHHHHHHHHHhhccccccCHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHhccCCCcc
Confidence 5 379999999999999999999999999999999999999999999999999999999999999999999765433
Q ss_pred CCCC-CCccccccc-----cCCCCHHHHHHHHHHHHHHHHHhhh-ccCCCCcccccCchHHHHHHHHHHHHHHHHHHHHH
Q 002543 457 SDDS-SDEDDVDEN-----SAGSDQDRASKLYATAKEKTLKVLA-EDDEVPESGVLSLPFMVRGMKKRKEEAIQEANAAL 529 (910)
Q Consensus 457 sded-~de~d~de~-----~~~sde~~~~~l~~~ake~~l~~l~-~d~e~p~~GL~~MkFMqrA~~~~kee~~ee~~~~l 529 (910)
++++ +++++++.+ .++.++++.... +..+. .......+|||+|+||++|++++++++.+++..++
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~gl~~mkFMk~a~erk~ee~~~e~~~l~ 401 (735)
T PF04615_consen 330 DEDEESDEEEEDEDDDEDDDDDDNPWMLRKK--------LEKLKEEEEDEEKKGLMSMKFMKRAEERKKEENDEEAEELR 401 (735)
T ss_pred ccccccccccchhhhccccccccCHHHHHHh--------hhhhhhcccchhhhhccchHHHHhhHHhHHHHHHHHHHHHH
Confidence 3221 111111111 111222322111 11111 11222378999999999999999999999999999
Q ss_pred HHHHHHhhhhcCCCCcc-cccccccCCccccCCccccccCCCccccccccCCCCCCcchhHHhhhcccCCCCCccccccc
Q 002543 530 QEYESSLKKLEGTGGEE-NLKEGAASGRRVFGPVKREVLVPSKKIETDNYYGNSDSEGDLEAEANMDAGNGTNNDVQKNV 608 (910)
Q Consensus 530 ~ele~~l~~~e~~~~ee-~~~~~~~~GRr~f~~~~~~~~~~~~k~~~~~~~~~sd~~~e~~~~~~~~l~~~~~~~~~~~~ 608 (910)
++|+.. .....+. ........||++|+++........... .... ..........+.................
T Consensus 402 ~Ele~~----~~~~~e~~~~~~~~~~gR~~~~~~~~~~~~~s~~~-~~~~--~~~~k~e~~sd~~~~~~~~~~~~~~~~~ 474 (735)
T PF04615_consen 402 RELEEE----ESEDEEEEEENEEKNVGRRKFGPGSSEKAKESKKD-SKEN--KSESKEEKSSDEEEDKENKMEDKVEKEE 474 (735)
T ss_pred HHHhhh----hhcccccccccccccccccccccccccccccccch-hhhh--hhhhhhcccccccccccccccccccccc
Confidence 998752 1111111 123456789999998541111100000 0000 0000000000000000000000000000
Q ss_pred c-CCcccccccCCCCCCCcccccccccCCCCCCCcccccccccCccccccCCCcc----------------ccccccccc
Q 002543 609 K-TDSFTLHVDHESHPDSVFKSFEDVVRDPGPKTSYDVAIFASGTWKKMKSGNDV----------------DANNEKSMK 671 (910)
Q Consensus 609 ~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~k~~~~v~~~~~~~~~~~k~~~~~----------------~~~~~k~~k 671 (910)
. .............. .......|+|+........ ........+
T Consensus 475 ~~~~~~k~~~~~~~~~--------------------~~~~~~eNpwl~~~~k~~k~~~~~~~k~~~~~~~~~~~~~~~~~ 534 (735)
T PF04615_consen 475 NKKKKKKSESAEDEEE--------------------KEEDDKENPWLKEESKKSKSKKKKKKKKKEISSEVNKSSNKISK 534 (735)
T ss_pred cccccccccccccccc--------------------cccccccchhhhcccccccccccccccccccccccccccccccc
Confidence 0 00000000000000 0000122333221100000 000000000
Q ss_pred cccc---------------ccccCCccccccccccCccccccccccccccccCCccCCCCccHHHHHHHhcCCCchHHHH
Q 002543 672 VVEP---------------ALNDQGLEETAREVDEESETDSEGQMVDGILSSAPKASYKLPSQEELIRLAFAGDDVEEDF 736 (910)
Q Consensus 672 ~~~~---------------~~~~~~~~~~~~~~~~~sd~d~e~~~v~~~~~s~~k~~~~~~~Q~eLIkeAFAgDDVv~eF 736 (910)
.... +................++++++..+ ..++.|++||++||||||||++|
T Consensus 535 ~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~------------~~~~~q~~li~~AFA~DdV~~eF 602 (735)
T PF04615_consen 535 SQAKVKKKKKKEKSKDESNILIDEENEVQIKSVDTDEDDEDDEED------------PFAFEQRELIREAFAGDDVVAEF 602 (735)
T ss_pred cccccccccccccccccccccccccchhcccccccccccccchhh------------hhhHHHHHHHHHHhcCCchHHHH
Confidence 0000 00000000000000001111111110 11369999999999999999999
Q ss_pred HHHHHHHHhhcCCCCCCCCCCCccccccccccccCCCCcchhhHHHHHHhHHHHhhcccccCCCceEEcccccccccccc
Q 002543 737 EEDKEKVLNEENPVPEKPNLIPGWGQWTDVQRKKGVPSWMLDEHENAKKMREEALKKRKDAHLKHVIISEKLDKKAEKLH 816 (910)
Q Consensus 737 ~kEK~~~ieee~pk~e~D~tLPGWGsW~G~~~Kk~~ps~~~~~~e~~KKkr~~~~kkRKDa~L~~VIInEKrdKK~~Kyq 816 (910)
++||.++++++.|+ ++|+||||||+|||.|.+++.++|+.+++. .+|..++.+++|+|++|+||||||++|+|++|||
T Consensus 603 ~~eK~~~~e~e~pk-~~~~~LPGWG~W~G~g~~~~~~~~~~~~~~-~~k~~~~~~~~RkD~~l~~VIInEk~~kk~~k~~ 680 (735)
T PF04615_consen 603 EKEKEEEIEEEKPK-EIDLTLPGWGSWAGPGIKKSKKKRKKKKRF-VKKIPGVKKKKRKDAKLKHVIINEKRDKKAAKYQ 680 (735)
T ss_pred HHHHHHHHhhhCCc-ccccCCCCcccccCCCcCccchhhhhhhhh-hhccccccccCCcccccCCeeecCcccchhhhhc
Confidence 99999999999997 589999999999999877665443332222 2333344567999999999999999999999999
Q ss_pred cCCCCCCCCCHHHHHHHhcCCCCCCCChHHHHhhhccCceeccCCccccCCCcc
Q 002543 817 TKTLPYPFTSKEVFEQSIRVPVGPEFNPATAVGALTRPDVKKKSGIIIKPIKFE 870 (910)
Q Consensus 817 v~~LPfPFts~eQyErSlR~PIG~EWNT~~afqkLt~PrVvtK~G~II~Pi~~e 870 (910)
|++|||||+|++|||+|||+||||||||.++||+||+|+|+||+|+||.||+.+
T Consensus 681 ~~~lP~pf~~~~qyE~slr~PiG~ewnt~~~~~~l~~P~V~~k~G~iI~P~~~p 734 (735)
T PF04615_consen 681 VSELPFPFTSKEQYERSLRQPIGPEWNTETAHQKLTKPRVVTKAGTIIEPMKKP 734 (735)
T ss_pred cccCCCCCCCHHHHHHHhcCCCCCCcChHHHHHHhhCCeeeccCCceeCCCCCC
Confidence 999999999999999999999999999999999999999999999999999875
No 2
>COG5644 Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=7.8e-116 Score=967.45 Aligned_cols=654 Identities=29% Similarity=0.437 Sum_probs=441.9
Q ss_pred hHHHHHHHhhhhCCCCccccccccccccccc---cCCCCCCCCCCCCCC--CCCCccchhhhcccccCCcchhHHHHHHH
Q 002543 148 DERHLRMLQGVTGMPSEFFEGKKKKKNVVIS---EAYPESEFNPTRDVL--DGNGQISIDDLLEPLQGKSGYSKLRKRMH 222 (910)
Q Consensus 148 ~~~h~~lL~~i~~l~~~~~~~~~r~k~~~~t---E~~~esEF~l~~~~~--~g~~kl~l~dLl~~l~~~~~~~~lkk~l~ 222 (910)
+.+..-+|..|+++.....+. +.+.++ ..+.+.+|.++.+.. +.+++|+|.|||..|+. .+|+-.|+
T Consensus 188 d~~~d~~~n~i~s~~~de~~a----~s~~~~d~~~s~e~~~y~~~~~n~~sgss~~i~itdll~~i~~----~q~~~~~~ 259 (869)
T COG5644 188 DSKLDNLRNYIVSLKKDEADA----ESVLSSDDNDSIEEIKYDPHETNKESGSSETIDITDLLDSIPM----EQLKVSLK 259 (869)
T ss_pred hhHHHHHHHHHHHHhhhhhcc----ccccccccCCchhhhccCCcccccccCCccceeHHHhhhccCH----HHHHHhhh
Confidence 455667888899985443222 223333 333578999886532 22448999999999987 88999999
Q ss_pred HhhhccCcccCCCCchHHHHHHHHHHHHHHHHhhhccHHHHHhhcCCCceeccCCCCCCCcchh-hhhccCCCCCHHHHH
Q 002543 223 QMRKKSTSVLAPLPKPEQEKLERKVVYEQSKKDITKWEPLVKMNREAPSIYFDEDTNLGFSTVG-AIAAGFEPRTEFEKK 301 (910)
Q Consensus 223 ~l~~~~~~l~~PL~k~~qeRieRkaAYe~tkkel~kW~~~Vk~NR~Ae~L~Fp~~~~~~~~~~~-~~~s~~kp~TeLE~e 301 (910)
.|.+++.+|.+||++++|+|++|+|||++++.+|.||.|||+.||+++||+||++.+..+.+.. -+++.|.|+|++|.+
T Consensus 260 ~l~~~ss~~d~pl~k~iq~r~erqaaye~tk~d~~kw~~iv~~nrksd~lifpmn~~~~~~~s~~~~~s~~~p~te~e~k 339 (869)
T COG5644 260 PLVSESSKLDAPLAKSIQDRLERQAAYEQTKNDLEKWKPIVADNRKSDQLIFPMNETARPVPSNNGLASSFEPRTESERK 339 (869)
T ss_pred hhccccccccCcchHHHHHHHHHHHHHHHhHHHHHhhchHhhhccccceeeecCCCCCCCCccccccccccCcchHHHHH
Confidence 9999999999999999999999999999999999999999999999999999987766554443 579999999999999
Q ss_pred HHHHhhhccchhhhhccchhhhhhccCCHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchhhHHHHhhHHHHHHHH-Hh
Q 002543 302 MASLVNDDKVKEAHKQDGSKLLELNKISVEDYLEERNHVAKMRSLLFRHEMKRKRIKKIKSKTYHRLLKKDRLKAAS-VE 380 (910)
Q Consensus 302 i~~lL~~s~l~~~~~~~~~e~l~~~~mS~EE~k~Rr~EL~kmR~L~fr~E~KaKRikKIKSK~YhRI~KKek~K~~~-k~ 380 (910)
|.++|..+||....+...+++|++++||+||+.+|+.+||.||+||||+|+||||++||||||||+|+|++++|+.. ..
T Consensus 340 ~~q~l~da~l~n~~~~~k~eela~~kls~ee~~~rt~qlr~mrelmfreerkakr~~kiksktyrkirk~~~~k~~~l~~ 419 (869)
T COG5644 340 MHQALLDAGLENESALKKQEELALNKLSVEEVAERTRQLRFMRELMFREERKAKRVAKIKSKTYRKIRKNRKEKEMALIP 419 (869)
T ss_pred HHHHHHhcccCChhhhhHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHhhhhhccc
Confidence 99999999998877667899999999999999999999999999999999999999999999999999999888642 11
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHHhcccccCccHHHHHHHHhccccCCHHHHHHHHHHHHHhHHHHHHHhhcCCCCCCCCC
Q 002543 381 MLMDPEAAKEEARKQEFKRAEERMTLKHKNSSRWAKRILKRGLDAQDEGTRAAITEQLQQHALLTRKMKSMKDSSSSDDS 460 (910)
Q Consensus 381 ~e~dpe~a~ee~ek~E~~RA~ERmtLKHkntsKWAK~~~~~G~~~~D~e~R~ai~EQL~~~~eL~~Ki~~~~~~sssded 460 (910)
.-.|. +-++.+.+||.|||||||+|||+|+|.|+.+. .++++||.+|.||||+|.+|++||.+..-. |+.
T Consensus 420 ~s~d~-----ene~~e~ara~ermt~rhk~~s~w~r~ml~~~--s~~~~tre~~~e~irkgd~l~~ri~~k~~~---d~e 489 (869)
T COG5644 420 KSEDL-----ENEKSEEARALERMTQRHKNTSSWTRKMLERA--SHGEGTREAVNEQIRKGDELMQRIHGKEIM---DGE 489 (869)
T ss_pred ccccc-----ccchhHHHHHHHHHHHhhccchHHHHHHHHHh--ccCchhHHHHHHHHHhHHHHHHHHhccccc---ccc
Confidence 11222 25689999999999999999999999999993 579999999999999999999999985421 110
Q ss_pred CCccccccccCCCCHHHHHHHHHHHHHHHHHhhhccCCCCcccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 002543 461 SDEDDVDENSAGSDQDRASKLYATAKEKTLKVLAEDDEVPESGVLSLPFMVRGMKKRKEEAIQEANAALQEYESSLKKLE 540 (910)
Q Consensus 461 ~de~d~de~~~~sde~~~~~l~~~ake~~l~~l~~d~e~p~~GL~~MkFMqrA~~~~kee~~ee~~~~l~ele~~l~~~e 540 (910)
|-.+. + .+|.+ +......+.++|-.. ...+|||+|+||++|..++..++.. .+++ |..++
T Consensus 490 -d~~~~---s-~sd~d-~~eq~~~~~e~ir~~------~~~~gvl~m~fmr~~~~rq~~a~k~----s~~~----L~~ve 549 (869)
T COG5644 490 -DVSEF---S-DSDYD-TNEQVSTAFEKIRNE------EELKGVLGMKFMRDASNRQMAASKI----SVAD----LVKVE 549 (869)
T ss_pred -ccccc---c-ccccc-chhhhhhHHHHHhhh------hhhcccchhHHhhccHHHHHHHHHh----HHHH----HhcCC
Confidence 00011 0 11111 111112234443322 3489999999999999999776544 2333 33343
Q ss_pred CCCC------c--ccccccccCCccccCCccccccCCCccccccccCCCCCCcchhHHhhhcccCCCCCccc--cccccC
Q 002543 541 GTGG------E--ENLKEGAASGRRVFGPVKREVLVPSKKIETDNYYGNSDSEGDLEAEANMDAGNGTNNDV--QKNVKT 610 (910)
Q Consensus 541 ~~~~------e--e~~~~~~~~GRr~f~~~~~~~~~~~~k~~~~~~~~~sd~~~e~~~~~~~~l~~~~~~~~--~~~~~~ 610 (910)
+++. . .......+.|||.|.|+..+..........+.+. +.+..|...+.... ++....
T Consensus 550 ngDdi~~~e~de~~g~~I~~n~gRr~~~p~~e~~~kl~~~~Rke~fV-----------t~s~sLe~~~~~~~~GQkk~ae 618 (869)
T COG5644 550 NGDDIDVGELDEVGGDAIYANAGRREVFPVVEQRRKLAPRKRKEDFV-----------TPSTSLEKSMDRILHGQKKRAE 618 (869)
T ss_pred CCCcccccccCCCcchhhhccccceeecccHHHHHhcCccccccccC-----------CchHHHHhhhHHhhccccccCc
Confidence 3221 0 1123445689999999765432211000111111 11111211110000 000011
Q ss_pred CcccccccCCCCCCCcccccccccCCCCCCCcccccccccCccccccCCCccccccccccccccccc---ccCCccc---
Q 002543 611 DSFTLHVDHESHPDSVFKSFEDVVRDPGPKTSYDVAIFASGTWKKMKSGNDVDANNEKSMKVVEPAL---NDQGLEE--- 684 (910)
Q Consensus 611 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~k~~~~v~~~~~~~~~~~k~~~~~~~~~~k~~k~~~~~~---~~~~~~~--- 684 (910)
+++..+. .......+++|+..+...+.. +.. ...+...++..+.+......... .....+.
T Consensus 619 gavv~E~-----p~e~~~~~npwl~~~~~r~~~-iKk-------~~~~~~~~dk~~~k~~~~~~~t~~~~l~~~kkr~g~ 685 (869)
T COG5644 619 GAVVFEK-----PLEATENFNPWLDRKMRRIKR-IKK-------KAYRRIRRDKRLKKKMPEEENTQENHLGSEKKRHGG 685 (869)
T ss_pred cceeecC-----chhhhhccChhhcchHHHHHH-HHH-------HhhhhhhhhhhhhhhhhhHHHHHHHHhcCccccCCC
Confidence 1111100 000012222232221110000 000 00000011111110000000000 0000000
Q ss_pred ccc--ccccCccccccccccccccccCCccCCCCccHHHHHHHhcCCCchHHHHHHHHHHHHhhcCCCCCCCCCCCcccc
Q 002543 685 TAR--EVDEESETDSEGQMVDGILSSAPKASYKLPSQEELIRLAFAGDDVEEDFEEDKEKVLNEENPVPEKPNLIPGWGQ 762 (910)
Q Consensus 685 ~~~--~~~~~sd~d~e~~~v~~~~~s~~k~~~~~~~Q~eLIkeAFAgDDVv~eF~kEK~~~ieee~pk~e~D~tLPGWGs 762 (910)
.+. ...-.++++....++...+.+.-...+.++.|++||+.||||||||++|++||++++..++|++ +|++|||||+
T Consensus 686 v~d~~~~e~~~ed~~~~~I~~p~g~~~~e~g~~i~~Q~elVa~AFagDdvvaEFeeeK~~iV~~eapKe-eD~~LPGWGe 764 (869)
T COG5644 686 VPDILLKEIEVEDDEKTPILSPGGDEEVEEGLSIKTQEELVALAFAGDDVVAEFEEEKREIVNREAPKE-EDVVLPGWGE 764 (869)
T ss_pred CchHHHHhhhcccccCCccccCCCCccccccchhhhHHHHHHHHhcCchHHHHHHHHHHHHhcccCccc-ccccCCCccc
Confidence 000 0000111122222221111111112245679999999999999999999999999999999975 8999999999
Q ss_pred ccccccccCC-CCcchhhHHHHHHhHHHH-hhcccccCCCceEEcccccccccccccCCCCCCCCCHHHHHHHhcCCCCC
Q 002543 763 WTDVQRKKGV-PSWMLDEHENAKKMREEA-LKKRKDAHLKHVIISEKLDKKAEKLHTKTLPYPFTSKEVFEQSIRVPVGP 840 (910)
Q Consensus 763 W~G~~~Kk~~-ps~~~~~~e~~KKkr~~~-~kkRKDa~L~~VIInEKrdKK~~Kyqv~~LPfPFts~eQyErSlR~PIG~ 840 (910)
|+|+|.|... .+.+ +||..+.. ..+|||.+|.||||||++|+|+.|||+..|||||+|++||||||++|||+
T Consensus 765 WaG~G~k~~~kk~~~------VKkV~g~i~~skRkD~nl~hVIINEkvnKk~~K~~a~~vPFpfetreQYersLn~pig~ 838 (869)
T COG5644 765 WAGPGLKVIKKKSNT------VKKVVGGIKYSKRKDFNLSHVIINEKVNKKDKKFLADEVPFPFETREQYERSLNAPIGR 838 (869)
T ss_pred ccCCCcchhcccchH------HHHHhcccCcccccccccceeeeccccchhhhhhccccCCCCCccHHHHHHHhcCCccc
Confidence 9998654221 2222 34433433 56999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHhhhccCceeccCCccccCCCcc
Q 002543 841 EFNPATAVGALTRPDVKKKSGIIIKPIKFE 870 (910)
Q Consensus 841 EWNT~~afqkLt~PrVvtK~G~II~Pi~~e 870 (910)
||||+.+|++|++|||+||+|.||.||++.
T Consensus 839 EwtTrash~~lV~pR~~tk~G~vi~p~kap 868 (869)
T COG5644 839 EWTTRASHKRLVRPRTRTKNGEVIEPFKAP 868 (869)
T ss_pred hhhHHHHHHHhhcceeeccCccccCcccCC
Confidence 999999999999999999999999999874
No 3
>KOG2172 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=9.1e-114 Score=971.29 Aligned_cols=646 Identities=44% Similarity=0.640 Sum_probs=496.1
Q ss_pred cccCCCCcccccCCCCCChhHHHHHhhhcCCCCCCCCCCCCCccccccccccCCCchHHhhhhcCCCccccccccCCCCC
Q 002543 30 KKLDGGGEKKKRKGPRLPNSLRKEIDRLNTNSLNGSDEDIGSDEARDFYEYEEPLPQEESRKNRRFDPVENYEYELPEKF 109 (910)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~y~~ee~~~~~e~~~~~r~d~~~~~e~~~~~~~ 109 (910)
-.+++..-.++..|||+|++|+++|++ ..++..+|+..+..+++|+|++++|+++|..|.|||.
T Consensus 8 s~~~ls~~dk~~l~~~~p~sI~k~~~n----e~~~~~~dde~~l~~l~~~~d~~~peeqS~gNn~~~~------------ 71 (654)
T KOG2172|consen 8 SSKVLSKWDKRILNNHLPESILKTIEN----EKSPLNSDDEHDLSHLLYEWDEDVPEEQSIGNNDHER------------ 71 (654)
T ss_pred chhhccccchhhhCccCchHHhhhhhc----ccccCCcchhhhhhhhhhccccCChhHhhhcCcchhh------------
Confidence 334444455667799999999999987 4445555544444779999999999999999999998
Q ss_pred ccCCCCCCCCCCCchhhcccCCCCcccCCCCCcCCCCchHHHHHHHhhhhCCCCccccccccccccccccCCCCCCCCCC
Q 002543 110 EDENVLSDDEDDNNDIENNCGRRGISKQVGDEFQDGDNDERHLRMLQGVTGMPSEFFEGKKKKKNVVISEAYPESEFNPT 189 (910)
Q Consensus 110 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~dd~~~h~~lL~~i~~l~~~~~~~~~r~k~~~~tE~~~esEF~l~ 189 (910)
+|+|+.+++|++ ++.+|+..|.++|..++.|+.+.+.+.+ +....+++|++++||.+
T Consensus 72 e~~~~esedD~e---------------------ed~~De~s~~~ml~~lt~mp~a~~Q~~k--k~~~~~~~Y~e~e~N~t 128 (654)
T KOG2172|consen 72 ELENKESEDDEE---------------------EDPDDEDSHDRMLKELTKMPSALFQERK--KPVRFTDSYPESEANPT 128 (654)
T ss_pred hhhccCCCCccc---------------------cCcccchhHHHHHhhhccCcHHHHhhhc--ccchhccccCccccCcc
Confidence 346666665532 4456788999999999999999888753 34555899999999987
Q ss_pred CCCCCCCCccchhhhcccccCCcchhHHHHHHHHhhhc-cCcccCCCCchHHHHHHHHHHHHHHHHhhhccHHHHHhhcC
Q 002543 190 RDVLDGNGQISIDDLLEPLQGKSGYSKLRKRMHQMRKK-STSVLAPLPKPEQEKLERKVVYEQSKKDITKWEPLVKMNRE 268 (910)
Q Consensus 190 ~~~~~g~~kl~l~dLl~~l~~~~~~~~lkk~l~~l~~~-~~~l~~PL~k~~qeRieRkaAYe~tkkel~kW~~~Vk~NR~ 268 (910)
..+..+.+-.++.+|+.+.....+...+.+.+..+.+. +.++.+||++++|+|++|+|||+.+.++++||.++|++||.
T Consensus 129 ~~vs~~ksi~s~~~L~~p~~g~~~~~kl~~~ise~~k~~ss~~~~pl~K~~q~RmeRkaa~e~~~~~~~kw~~~vk~nr~ 208 (654)
T KOG2172|consen 129 RLVSEEKSIKSIDDLKVPDMGKWGDKKLLKEISELRKDLSSAVDAPLPKPEQERMERKAAYELVHQDFNKWVKIVKRNRE 208 (654)
T ss_pred ccccccccccccchhccccccchhhHHHHHHHHHHhhhhhhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 76545555567888888888888888888888887664 57899999999999999999999999999999999999999
Q ss_pred CCceeccCCCCCCCcchhhhhccCCCCCHHHHHHHHHhhhccchhhhhccchhhhhhccCCHHHHHHHHHHHHHHHHhhh
Q 002543 269 APSIYFDEDTNLGFSTVGAIAAGFEPRTEFEKKMASLVNDDKVKEAHKQDGSKLLELNKISVEDYLEERNHVAKMRSLLF 348 (910)
Q Consensus 269 Ae~L~Fp~~~~~~~~~~~~~~s~~kp~TeLE~ei~~lL~~s~l~~~~~~~~~e~l~~~~mS~EE~k~Rr~EL~kmR~L~f 348 (910)
|.||+||++.++++++.+++++.|.|+|+||.++.++|..++|...+++. ++|+++.+| |++..||.++++||+|||
T Consensus 209 ~~~L~f~~~~~~~~~~~~~~as~~~p~tE~eek~~q~l~d~~ll~~~~~~--~el~~n~~s-e~~~~r~~~~~~mrel~f 285 (654)
T KOG2172|consen 209 ADTLIFPQNKQVGYSTVGAIASQFQPRTESEEKMAQVLDDEELLNPHKEN--EELELNKDS-EEHAKRRSEVRKMRELMF 285 (654)
T ss_pred ccceeecccccccccccchhccccccchHHHHHHhhhhhhhhccccchhh--HHHHHhhcC-hhHhhhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988775 889999999 999999999999999999
Q ss_pred HHHHHHHHhhhhchhhHHHHhhHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhcccccCccHHHHHHHHhccccCCH
Q 002543 349 RHEMKRKRIKKIKSKTYHRLLKKDRLKAASVEMLMDPEAAKEEARKQEFKRAEERMTLKHKNSSRWAKRILKRGLDAQDE 428 (910)
Q Consensus 349 r~E~KaKRikKIKSK~YhRI~KKek~K~~~k~~e~dpe~a~ee~ek~E~~RA~ERmtLKHkntsKWAK~~~~~G~~~~D~ 428 (910)
|+++|+|||+||||||||+|.+++..+ ...+.+++.+.++.++++.+||.|||||+|+|+|+||| |.
T Consensus 286 Reerk~kr~~kikskty~ki~~~~lek---~~~~~~~~~~~e~~e~qe~ara~eRmt~~hk~~~~w~k----------~~ 352 (654)
T KOG2172|consen 286 REERKAKRIKKIKSKTYHKIKKKELEK---RPAEKEEIDLEEEAEKQEEARAEERMTLKHKNTSQWAK----------DS 352 (654)
T ss_pred hhhhhhhHHhhhhhhhhhccchhhHhh---cccccchhhHHHHhhhHHHHHHHHHhhhhccccccccc----------Cc
Confidence 999999999999999999999998877 12347899999999999999999999999999999998 66
Q ss_pred HHHHHHHHHHHHhHHHHHHHhhcCCCCCCCCCCCccccccccCCCCHHHHHHHHHHHHHHHHHhhhccCCCCcccccCch
Q 002543 429 GTRAAITEQLQQHALLTRKMKSMKDSSSSDDSSDEDDVDENSAGSDQDRASKLYATAKEKTLKVLAEDDEVPESGVLSLP 508 (910)
Q Consensus 429 e~R~ai~EQL~~~~eL~~Ki~~~~~~sssded~de~d~de~~~~sde~~~~~l~~~ake~~l~~l~~d~e~p~~GL~~Mk 508 (910)
+||.+|.+||+.+..|.+||.+...+++|++ +.+ .. + .+..|.++++..+
T Consensus 353 ~tre~~~eqlr~~~~L~~km~~~~~~~~~~e--------------~~e-~~-------------~--~~v~~~~~~~e~~ 402 (654)
T KOG2172|consen 353 GTREVLSEQLRIGARLKAKMNSRKSGESSDE--------------TQE-QP-------------V--DDVVPMKFEEELP 402 (654)
T ss_pred cHHHHHHHHHhhhHHHHHHhhcccccccccc--------------ccc-Cc-------------c--ccccccccccchH
Confidence 8999999999999999999998775433332 011 00 0 1345777888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcccccccccCCccccCCccccccCCCccccccccCCCCCCcchh
Q 002543 509 FMVRGMKKRKEEAIQEANAALQEYESSLKKLEGTGGEENLKEGAASGRRVFGPVKREVLVPSKKIETDNYYGNSDSEGDL 588 (910)
Q Consensus 509 FMqrA~~~~kee~~ee~~~~l~ele~~l~~~e~~~~ee~~~~~~~~GRr~f~~~~~~~~~~~~k~~~~~~~~~sd~~~e~ 588 (910)
||+||+.++..++.++++.. .++.+.. -+++... |.+..+. ......+++++.+++...
T Consensus 403 ~~ar~~kk~~l~A~E~~~~~---~~~~~~~---~~~~~~p-------r~~~~~~-------~~e~~~~n~~d~s~~~~~- 461 (654)
T KOG2172|consen 403 RKARAEKKKNLEAKEEARKG---TEGDEEC---FGGEELP-------RVVEAPL-------ESEKTKNNFVDESDEKKN- 461 (654)
T ss_pred HHHHHHHHHHHHHHHHhhcc---cchhhhh---hccccCC-------chhhccc-------ccccccccCCCchhhhhc-
Confidence 99999888877776654321 1110000 0111000 1111000 000111222222221000
Q ss_pred HHhhhcccCCCCCccccccccCCcccccccCCCCCCCcccccccccCCCCCCCcccccccccCccccccCCCcccccccc
Q 002543 589 EAEANMDAGNGTNNDVQKNVKTDSFTLHVDHESHPDSVFKSFEDVVRDPGPKTSYDVAIFASGTWKKMKSGNDVDANNEK 668 (910)
Q Consensus 589 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~k~~~~v~~~~~~~~~~~k~~~~~~~~~~k 668 (910)
.+. ++.. .+...+ .+.++.+ +
T Consensus 462 ------~~~-~~~~-----~~lk~~--------------------------------~~~~~ps---------------~ 482 (654)
T KOG2172|consen 462 ------DMP-GVHD-----IQLKAV--------------------------------ETTASPS---------------R 482 (654)
T ss_pred ------Ccc-cchh-----hhhhhh--------------------------------hhccCcc---------------c
Confidence 000 0000 000000 0000000 0
Q ss_pred cccccccccccCCccccccccccCccccccccccccccccCCccCCCCccHHHHHHHhcCCCchHHHHHHHHHHHHhhcC
Q 002543 669 SMKVVEPALNDQGLEETAREVDEESETDSEGQMVDGILSSAPKASYKLPSQEELIRLAFAGDDVEEDFEEDKEKVLNEEN 748 (910)
Q Consensus 669 ~~k~~~~~~~~~~~~~~~~~~~~~sd~d~e~~~v~~~~~s~~k~~~~~~~Q~eLIkeAFAgDDVv~eF~kEK~~~ieee~ 748 (910)
...+.+++.+.+.. .+++++++. .++|++||++||||||||++|+++|+++++.++
T Consensus 483 ~~~~~vp~~~~~~k---------~~E~ed~ed---------------~~~Q~elI~eAFagDDVv~dFekeK~evv~~e~ 538 (654)
T KOG2172|consen 483 AESLAVPISQVQEK---------DEESEDDED---------------VPKQAELIAEAFAGDDVVRDFEKEKEEVVEQEK 538 (654)
T ss_pred cccccCccchhhhh---------hhhhccchh---------------hhhHHHHHHHHhcCCcHHHHHHHHHHHHhhhcc
Confidence 00111222211110 111111111 149999999999999999999999999999999
Q ss_pred CCCCCCCCCCccccccccccccCCCCcchhhHHHHHHhHHHHhhcccccCCCceEEcccccccccccccCCCCCCCCCHH
Q 002543 749 PVPEKPNLIPGWGQWTDVQRKKGVPSWMLDEHENAKKMREEALKKRKDAHLKHVIISEKLDKKAEKLHTKTLPYPFTSKE 828 (910)
Q Consensus 749 pk~e~D~tLPGWGsW~G~~~Kk~~ps~~~~~~e~~KKkr~~~~kkRKDa~L~~VIInEKrdKK~~Kyqv~~LPfPFts~e 828 (910)
|+ ++|+||||||+|||+|.|.++++|.+..+.... +++|||++|+||||||++|+|++|||+..||||||+++
T Consensus 539 pk-e~d~~LpGWGeW~G~G~k~~kkkr~~~~~~~~~------~~~RKD~nl~~VIInEkvnkka~K~q~~slPFPyt~~E 611 (654)
T KOG2172|consen 539 PK-EVDLTLPGWGEWGGVGLKPGKKKRKVFKIKAAE------KKKRKDKNLKNVIINEKVNKKAAKLQTRSLPFPYTSRE 611 (654)
T ss_pred cc-cccccCCCcccccCccccccccccceeeeeccC------CCCccccccCceeecccccchhhhcccccCCCCCccHH
Confidence 98 599999999999999988888877776554432 24899999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCCChHHHHhhhccCceeccCCccccCCCccc
Q 002543 829 VFEQSIRVPVGPEFNPATAVGALTRPDVKKKSGIIIKPIKFEE 871 (910)
Q Consensus 829 QyErSlR~PIG~EWNT~~afqkLt~PrVvtK~G~II~Pi~~e~ 871 (910)
||||||||||||||||+++||+||+|+||||+|+||.||+++.
T Consensus 612 qyE~sl~~PIG~Ewnt~~~~~~L~rPrVv~k~G~iI~Pik~~~ 654 (654)
T KOG2172|consen 612 QYERSLRMPIGPEWNTRRIFQKLVRPRVVTKAGVIIKPIKAEE 654 (654)
T ss_pred HHHHHhcCCcCccccHHHHHHHhcCceeeccCccccccccCCC
Confidence 9999999999999999999999999999999999999999863
No 4
>KOG2172 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.97 E-value=0.001 Score=78.49 Aligned_cols=201 Identities=19% Similarity=0.201 Sum_probs=139.5
Q ss_pred HHHHHHHhhhccHHHHHhhcCCCceeccC-CCCCCCcc-h----hhhhccCCCCCHHHHHHHHHhhhccc----hhhh-h
Q 002543 248 VYEQSKKDITKWEPLVKMNREAPSIYFDE-DTNLGFST-V----GAIAAGFEPRTEFEKKMASLVNDDKV----KEAH-K 316 (910)
Q Consensus 248 AYe~tkkel~kW~~~Vk~NR~Ae~L~Fp~-~~~~~~~~-~----~~~~s~~kp~TeLE~ei~~lL~~s~l----~~~~-~ 316 (910)
.+..++..+++|+..+..|-...+|.|+. ......++ . ..+...|.-.++.++.|.+..+.+.+ .... .
T Consensus 4 ~~~ss~~~ls~~dk~~l~~~~p~sI~k~~~ne~~~~~~dde~~l~~l~~~~d~~~peeqS~gNn~~~~e~~~~esedD~e 83 (654)
T KOG2172|consen 4 KFNSSSKVLSKWDKRILNNHLPESILKTIENEKSPLNSDDEHDLSHLLYEWDEDVPEEQSIGNNDHERELENKESEDDEE 83 (654)
T ss_pred ccccchhhccccchhhhCccCchHHhhhhhcccccCCcchhhhhhhhhhccccCChhHhhhcCcchhhhhhccCCCCccc
Confidence 45678899999999999999999999994 22222222 2 23778899999999999999888522 2111 1
Q ss_pred ccch-------hhhhhccCCHHHHHHHHHHHHHHHHhhhHHHHHHH------HhhhhchhhHHHHhhHHH--HHHHHH--
Q 002543 317 QDGS-------KLLELNKISVEDYLEERNHVAKMRSLLFRHEMKRK------RIKKIKSKTYHRLLKKDR--LKAASV-- 379 (910)
Q Consensus 317 ~~~~-------e~l~~~~mS~EE~k~Rr~EL~kmR~L~fr~E~KaK------RikKIKSK~YhRI~KKek--~K~~~k-- 379 (910)
++.+ .++.+..|.+....+|-. ..|.+..|.|..+. =-+.|+|.-|+..-...+ -.....
T Consensus 84 ed~~De~s~~~ml~~lt~mp~a~~Q~~kk---~~~~~~~Y~e~e~N~t~~vs~~ksi~s~~~L~~p~~g~~~~~kl~~~i 160 (654)
T KOG2172|consen 84 EDPDDEDSHDRMLKELTKMPSALFQERKK---PVRFTDSYPESEANPTRLVSEEKSIKSIDDLKVPDMGKWGDKKLLKEI 160 (654)
T ss_pred cCcccchhHHHHHhhhccCcHHHHhhhcc---cchhccccCccccCccccccccccccccchhccccccchhhHHHHHHH
Confidence 1112 334667777776665544 78999999999998 778999999998765443 111222
Q ss_pred -hhc-CCHHHHHHHHHHHHHHHHHHHhc--ccccCccHHHHHHHHhccccCCHHHH----------HHHHHHHHHhHHHH
Q 002543 380 -EML-MDPEAAKEEARKQEFKRAEERMT--LKHKNSSRWAKRILKRGLDAQDEGTR----------AAITEQLQQHALLT 445 (910)
Q Consensus 380 -~~e-~dpe~a~ee~ek~E~~RA~ERmt--LKHkntsKWAK~~~~~G~~~~D~e~R----------~ai~EQL~~~~eL~ 445 (910)
++. ..+-.+...+.+.+.+|++.+|. |.|++-+||++.+..-+. .++.-++ .+|+.|++-+.+|.
T Consensus 161 se~~k~~ss~~~~pl~K~~q~RmeRkaa~e~~~~~~~kw~~~vk~nr~-~~~L~f~~~~~~~~~~~~~~as~~~p~tE~e 239 (654)
T KOG2172|consen 161 SELRKDLSSAVDAPLPKPEQERMERKAAYELVHQDFNKWVKIVKRNRE-ADTLIFPQNKQVGYSTVGAIASQFQPRTESE 239 (654)
T ss_pred HHHhhhhhhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-ccceeecccccccccccchhccccccchHHH
Confidence 222 24555556677888888888888 999999999999766542 3333333 34566677778888
Q ss_pred HHHhhcC
Q 002543 446 RKMKSMK 452 (910)
Q Consensus 446 ~Ki~~~~ 452 (910)
.+|.+.-
T Consensus 240 ek~~q~l 246 (654)
T KOG2172|consen 240 EKMAQVL 246 (654)
T ss_pred HHHhhhh
Confidence 8887754
No 5
>PF10175 MPP6: M-phase phosphoprotein 6; InterPro: IPR019324 This entry describes M-phase phosphoprotein 6 (MPP6), which is involved in generation of the 3' end of the 5.8S rRNA precursor [].
Probab=84.47 E-value=0.69 Score=44.07 Aligned_cols=21 Identities=33% Similarity=0.605 Sum_probs=16.1
Q ss_pred ccccCchHHHHHHHHHHHHHH
Q 002543 502 SGVLSLPFMVRGMKKRKEEAI 522 (910)
Q Consensus 502 ~GL~~MkFMqrA~~~~kee~~ 522 (910)
++|++||||||+..+..++..
T Consensus 3 ~~ll~MKFMQR~~~~~~k~~~ 23 (104)
T PF10175_consen 3 SNLLDMKFMQRAKEKEEKEQL 23 (104)
T ss_pred hhhhhhhHhhhhhHHHHHHHH
Confidence 578999999999876655443
No 6
>KOG4531 consensus M phase phosphoprotein 6 [Cell cycle control, cell division, chromosome partitioning]
Probab=67.41 E-value=3.6 Score=41.26 Aligned_cols=29 Identities=24% Similarity=0.308 Sum_probs=20.4
Q ss_pred cccccCchHHHHHHHHHHHHHHHHHHHHH
Q 002543 501 ESGVLSLPFMVRGMKKRKEEAIQEANAAL 529 (910)
Q Consensus 501 ~~GL~~MkFMqrA~~~~kee~~ee~~~~l 529 (910)
.+||+.|+||||...+..+.+.++..+++
T Consensus 10 S~~lLdMKFMqr~~~k~~Kk~~~e~~~~i 38 (165)
T KOG4531|consen 10 SSSLLDMKFMQRIETKAAKKKEAELDQLI 38 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36899999999987766655555444444
No 7
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=60.60 E-value=9.2 Score=48.06 Aligned_cols=11 Identities=27% Similarity=0.238 Sum_probs=6.7
Q ss_pred HHHHhhhcCCC
Q 002543 51 RKEIDRLNTNS 61 (910)
Q Consensus 51 ~~~~~~~~~~~ 61 (910)
.=||+++-|+.
T Consensus 1394 ~yEIGR~r~~~ 1404 (1516)
T KOG1832|consen 1394 MYEIGRRRPTD 1404 (1516)
T ss_pred hhhhcccCCCc
Confidence 35777766653
No 8
>PF09026 CENP-B_dimeris: Centromere protein B dimerisation domain; InterPro: IPR015115 Centromere protein B (CENP-B) interacts with centromeric heterochromatin in chromosomes and binds to a specific subset of alphoid satellite DNA, called the CENP-B box. CENP-B may organise arrays of centromere satellite DNA into a higher order structure, which then directs centromere formation and kinetochore assembly in mammalian chromosomes. The CENP-B dimerisation domain is composed of two alpha-helices, which are folded into an antiparallel configuration. Dimerisation of CENP-B is mediated by this domain, in which monomers dimerise to form a symmetrical, antiparallel, four-helix bundle structure with a large hydrophobic patch in which 23 residues of one monomer form van der Waals contacts with the other monomer. This CENP-B dimer configuration may be suitable for capturing two distant CENP-B boxes during centromeric heterochromatin formation []. ; GO: 0003677 DNA binding, 0003682 chromatin binding, 0006355 regulation of transcription, DNA-dependent, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 1UFI_A.
Probab=54.62 E-value=4.1 Score=38.33 Aligned_cols=19 Identities=32% Similarity=0.438 Sum_probs=0.0
Q ss_pred CCCCccCCCCCCCCCCCch
Q 002543 106 PEKFEDENVLSDDEDDNND 124 (910)
Q Consensus 106 ~~~~~d~~~~~~~~~~~~~ 124 (910)
....+|+|-+||++++++|
T Consensus 6 ~eg~~dse~dsdEdeeeed 24 (101)
T PF09026_consen 6 LEGEEDSESDSDEDEEEED 24 (101)
T ss_dssp -------------------
T ss_pred cccCcccccccccchhhhh
Confidence 3455677777666655444
No 9
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=46.22 E-value=34 Score=43.44 Aligned_cols=6 Identities=17% Similarity=0.268 Sum_probs=2.9
Q ss_pred hcCCCC
Q 002543 57 LNTNSL 62 (910)
Q Consensus 57 ~~~~~~ 62 (910)
|++.+.
T Consensus 632 l~~~~~ 637 (784)
T PF04931_consen 632 LDAKEN 637 (784)
T ss_pred hccCCC
Confidence 564443
No 10
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=43.33 E-value=13 Score=43.75 Aligned_cols=7 Identities=43% Similarity=0.667 Sum_probs=4.6
Q ss_pred CCCcccc
Q 002543 756 LIPGWGQ 762 (910)
Q Consensus 756 tLPGWGs 762 (910)
.+||=|.
T Consensus 423 p~PG~GA 429 (458)
T PF10446_consen 423 PAPGKGA 429 (458)
T ss_pred CCCCchH
Confidence 3688764
No 11
>PF03115 Astro_capsid: Astrovirus capsid protein precursor; InterPro: IPR004337 The astrovirus genome is apparently organised with nonstructural proteins encoded at the 5' end and structural proteins at the 3' end []. Proteins in this family are encoded by astrovirus ORF2, one of the three astrovirus ORFs (1a, 1b, 2). The proteins contain a viral RNA-dependent RNA polymerase motif []. The 87kDa precursor polyprotein undergoes an intracellular cleavage to form a 79kDa protein. Subsequently, extracellular trypsin cleavage yields the three proteins forming the infectious virion [].; PDB: 3QSQ_A 3TS3_D.
Probab=32.07 E-value=15 Score=46.30 Aligned_cols=10 Identities=0% Similarity=0.351 Sum_probs=0.0
Q ss_pred hHHHHHHHhh
Q 002543 148 DERHLRMLQG 157 (910)
Q Consensus 148 ~~~h~~lL~~ 157 (910)
+..++-||.+
T Consensus 707 e~~R~~L~nT 716 (787)
T PF03115_consen 707 ENNRVTLFNT 716 (787)
T ss_dssp ----------
T ss_pred chhHHHHHHH
Confidence 5667777766
No 12
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=24.64 E-value=76 Score=40.34 Aligned_cols=7 Identities=29% Similarity=0.615 Sum_probs=2.9
Q ss_pred chHHHHH
Q 002543 147 NDERHLR 153 (910)
Q Consensus 147 d~~~h~~ 153 (910)
||+.-.+
T Consensus 730 dDe~m~~ 736 (784)
T PF04931_consen 730 DDEQMMA 736 (784)
T ss_pred CHHHHHH
Confidence 3444443
No 13
>PF05764 YL1: YL1 nuclear protein; InterPro: IPR008895 The proteins in this family are designated YL1 []. They have been shown to be DNA-binding and may be transcription factors [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=20.83 E-value=69 Score=34.93 Aligned_cols=12 Identities=33% Similarity=0.648 Sum_probs=4.9
Q ss_pred CCCCChhHHHHH
Q 002543 43 GPRLPNSLRKEI 54 (910)
Q Consensus 43 ~~~~~~~~~~~~ 54 (910)
|=+|-.-|-.|+
T Consensus 11 Gnrm~~LL~~E~ 22 (240)
T PF05764_consen 11 GNRMKKLLEEEL 22 (240)
T ss_pred hHHHHHHHHHHH
Confidence 544433333333
Done!