Query 002543
Match_columns 910
No_of_seqs 176 out of 283
Neff 5.4
Searched_HMMs 29240
Date Tue Mar 26 16:18:08 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002543.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1262-1266//hhsearch_pdb/002543hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2yhg_A SDE_182CT, cellulose-bi 1.0 1 1 16.0 0.8 13 247-259 84-96 (437)
2 3u65_B TP33 protein; tetratric 1.0 1 1 13.0 -0.6 15 499-513 88-104 (328)
3 1g6e_A Antifungal protein; all 1.0 1 1 12.9 -0.7 17 748-765 59-75 (87)
4 1zkz_A Growth/differentiation 1.0 1 1 11.5 0.4 5 759-763 21-25 (110)
5 2h62_A BMP-2, BMP-2A, bone mor 1.0 1 1 11.5 0.4 5 759-763 27-31 (114)
6 2arp_A Inhibin beta A chain; c 1.0 1 1 11.5 0.4 5 759-763 24-28 (116)
7 2lev_A LER; transcription regu 1.0 1 1 11.5 -1.3 28 763-793 26-53 (57)
8 3ica_A Phenylalanyl-tRNA synth 1.0 1 1 11.3 -3.7 29 819-847 25-63 (213)
9 1txl_A Metal-binding protein Y 1.0 1 1 11.1 -0.3 16 747-763 45-61 (215)
10 3ig2_A Phenylalanyl-tRNA synth 1.0 1 1 11.1 -3.0 29 819-847 25-63 (213)
No 1
>2yhg_A SDE_182CT, cellulose-binding protein; hydrolase, glycoside hydrolase; HET: BTB; 1.08A {Saccharophagus degradans}
Probab=1.00 E-value=1 Score=16.03 Aligned_cols=13 Identities=23% Similarity=0.409 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHCC
Q ss_conf 9999988754131
Q 002543 247 VVYEQSKKDITKW 259 (910)
Q Consensus 247 aAYe~tkkel~kW 259 (910)
.||+++-..|.+-
T Consensus 84 ~aY~~v~~nL~~h 96 (437)
T 2yhg_A 84 NAYSQAYPNLSKH 96 (437)
T ss_dssp HHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHH
T ss_conf 9999999988740
No 2
>3u65_B TP33 protein; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; HET: EDO; 1.40A {Treponema pallidum subsp} PDB: 4di4_B* 4di3_D*
Probab=1.00 E-value=1 Score=13.01 Aligned_cols=15 Identities=33% Similarity=0.778 Sum_probs=11.7
Q ss_pred CCC--CCCCCCHHHHHH
Q ss_conf 886--666686678879
Q 002543 499 VPE--SGVLSLPFMVRG 513 (910)
Q Consensus 499 ~p~--~GL~~MkFMkrA 513 (910)
.|. -+++.|||+-+.
T Consensus 88 ~P~~~~~v~~lPflf~~ 104 (328)
T 3u65_B 88 APDSGIYTLSVPFLIQN 104 (328)
T ss_dssp STTCCBGGGGSTTTSCS
T ss_pred CCHHHHHHEECCEECCC
T ss_conf 97443024038810699
No 3
>1g6e_A Antifungal protein; all-beta, two antiparallel beta-sheets, parallel beta- sandwich; NMR {Streptomyces tendae} SCOP: b.11.1.6 PDB: 1gh5_A
Probab=1.00 E-value=1 Score=12.91 Aligned_cols=17 Identities=24% Similarity=0.769 Sum_probs=12.0
Q ss_pred CCCCCCCCCCCCCCCCCC
Q ss_conf 999988887886556644
Q 002543 748 NPVPEKPNLIPGWGQWTD 765 (910)
Q Consensus 748 ~pk~e~D~tLPGWGsW~G 765 (910)
.|.- ...||.-||||--
T Consensus 59 ~prl-etitl~kw~sw~p 75 (87)
T 1g6e_A 59 DPRL-ETITLQKWGSWNP 75 (87)
T ss_dssp TTCE-EEEEECTTEEECC
T ss_pred CCCE-EEEEHHHHCCCCC
T ss_conf 8521-5898567268999
No 4
>1zkz_A Growth/differentiation factor 2; glycoprotein, growth factor, cytokine, hormone-growth factor; 2.33A {Homo sapiens}
Probab=1.00 E-value=1 Score=11.52 Aligned_cols=5 Identities=60% Similarity=2.348 Sum_probs=0.0
Q ss_pred CCCCC
Q ss_conf 65566
Q 002543 759 GWGQW 763 (910)
Q Consensus 759 GWGsW 763 (910)
||++|
T Consensus 21 GW~~W 25 (110)
T 1zkz_A 21 GWDSW 25 (110)
T ss_dssp TCTTT
T ss_pred CCCCE
T ss_conf 89430
No 5
>2h62_A BMP-2, BMP-2A, bone morphogenetic protein 2; TGF-beta superfamily, ligand-receptor complex, hormone/growth factor complex; 1.85A {Homo sapiens} SCOP: g.17.1.2 PDB: 2goo_A* 1rew_A 3bmp_A 2qj9_B 1es7_A 2qja_A 2qjb_A 2h64_A 3bk3_A 1reu_A
Probab=1.00 E-value=1 Score=11.51 Aligned_cols=5 Identities=60% Similarity=2.415 Sum_probs=0.0
Q ss_pred CCCCC
Q ss_conf 65566
Q 002543 759 GWGQW 763 (910)
Q Consensus 759 GWGsW 763 (910)
||+.|
T Consensus 27 GW~~W 31 (114)
T 2h62_A 27 GWNDW 31 (114)
T ss_dssp TCTTT
T ss_pred CCCCC
T ss_conf 88330
No 6
>2arp_A Inhibin beta A chain; cystine knot, disulfide rich, EGF domain, kazal domain, PROT complex, hormone-growth factor complex; HET: 1PG; 2.00A {Homo sapiens} SCOP: g.17.1.2 PDB: 1nyu_B 1nys_B 1s4y_B* 2arv_A* 2b0u_A 2p6a_A 3b4v_A*
Probab=1.00 E-value=1 Score=11.48 Aligned_cols=5 Identities=60% Similarity=2.415 Sum_probs=0.0
Q ss_pred CCCCC
Q ss_conf 65566
Q 002543 759 GWGQW 763 (910)
Q Consensus 759 GWGsW 763 (910)
||++|
T Consensus 24 GW~~W 28 (116)
T 2arp_A 24 GWNDW 28 (116)
T ss_dssp TCTTT
T ss_pred CCCCC
T ss_conf 89440
No 7
>2lev_A LER; transcription regulator-DNA complex, arginine-minor-groove recognition; HET: DNA; NMR {Escherichia coli}
Probab=1.00 E-value=1 Score=11.46 Aligned_cols=28 Identities=29% Similarity=0.630 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHC
Q ss_conf 6445333699984034578888767987410
Q 002543 763 WTDVQRKKGVPSWMLDEHENAKKMREEALKK 793 (910)
Q Consensus 763 W~G~~~Kk~~ps~~~~~~e~~KKkr~~~~kk 793 (910)
|+|.+.. |.|+......-+..-.|++++
T Consensus 26 WtGrGR~---P~Wi~~al~aGksledFlI~~ 53 (57)
T 2lev_A 26 WSGVGRQ---PRWLKEALLNGMKKEDFLVKD 53 (57)
T ss_dssp ECSSSCC---CHHHHHHHHTTSCGGGGEEES
T ss_pred ECCCCCC---CHHHHHHHHCCCCHHHHCCCC
T ss_conf 5798988---789999999599899935677
No 8
>3ica_A Phenylalanyl-tRNA synthetase beta chain; APC61692.1, phenylalanyl-tRNA SYNT beta subunit, structural genomics, PSI-2; HET: TAM; 2.44A {Porphyromonas gingivalis}
Probab=1.00 E-value=1 Score=11.28 Aligned_cols=29 Identities=21% Similarity=0.282 Sum_probs=0.0
Q ss_pred CCCCCCCCHHHHHHH----------HCCCCCCCCCHHHH
Q ss_conf 899988899999998----------22998999881898
Q 002543 819 TLPYPFTSKEVFEQS----------IRVPVGPEFNPATA 847 (910)
Q Consensus 819 ~LPfPFts~eQYErS----------LR~PIG~EWNT~~s 847 (910)
.+.|+|++.+.|+.. |.+||..|.+..++
T Consensus 25 vitysf~s~~~~~~~~~~~~~~~v~l~NPls~e~~vmRt 63 (213)
T 3ica_A 25 ILNNSLTAGSYYEGLKSHPREMAVELMNPLSQELNCMRQ 63 (213)
T ss_dssp CCCCSEEEGGGGTTCSSSCGGGCCBCSSBSCSSEEEECS
T ss_pred EEECCCCCHHHHHHHCCCCCCCEEEECCCCCHHHHHHHH
T ss_conf 200667898999662266767828943986277999998
No 9
>1txl_A Metal-binding protein YODA; E.coli, structural genomics, NEW fold, PSI, protein structure initiative; 1.70A {Escherichia coli} SCOP: b.60.1.4 PDB: 1s7d_A 1oej_A 1oee_A 1oek_A
Probab=1.00 E-value=1 Score=11.14 Aligned_cols=16 Identities=19% Similarity=0.783 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCC-CCC
Q ss_conf 39999888878865-566
Q 002543 747 ENPVPEKPNLIPGW-GQW 763 (910)
Q Consensus 747 e~pk~e~D~tLPGW-GsW 763 (910)
++..+ .|.+|..| |.|
T Consensus 45 ~d~~v-kdr~LsDW~G~W 61 (215)
T 1txl_A 45 DDANV-QNRTLSDWDGVW 61 (215)
T ss_dssp CGGGC-CCCCGGGGCEEE
T ss_pred CHHHC-CCCCCCCCCCEE
T ss_conf 23441-457655568467
No 10
>3ig2_A Phenylalanyl-tRNA synthetase beta chain; phers, MCSG, structural genomics, midwest center for structural GE protein structure initiative; HET: MSE; 2.09A {Bacteroides fragilis}
Probab=1.00 E-value=1 Score=11.08 Aligned_cols=29 Identities=14% Similarity=0.252 Sum_probs=0.0
Q ss_pred CCCCCCCCHHHHHHH----------HCCCCCCCCCHHHH
Q ss_conf 899988899999998----------22998999881898
Q 002543 819 TLPYPFTSKEVFEQS----------IRVPVGPEFNPATA 847 (910)
Q Consensus 819 ~LPfPFts~eQYErS----------LR~PIG~EWNT~~s 847 (910)
.+.|+|++.+.|+.. |..||..|.+..++
T Consensus 25 vitysf~~~~~~~~~~~~~~~~~v~l~NPls~e~~vmRt 63 (213)
T 3ig2_A 25 ILNNSLTRAAYYDGLESYPSKNLVMLLNPLSADLNCMRQ 63 (213)
T ss_dssp CCCCSEECGGGGTTCSSSCGGGCEEBSSGGGCSCCEECS
T ss_pred EECCCCCCHHHHHHHCCCCCCCEEEEECCCCHHHHHHHH
T ss_conf 741555798999761266767817975886366899998
Done!