Query 002543
Match_columns 910
No_of_seqs 176 out of 283
Neff 5.4
Searched_HMMs 13730
Date Tue Mar 26 16:22:30 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002543.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_1262-1266//hhsearch_scop/002543hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1g6ea_ b.11.1.6 (A:) Antifung 3.9 69 0.005 6.9 -0.7 17 748-765 59-75 (87)
2 d2glia5 g.37.1.1 (A:229-257) F 3.6 1.1E+02 0.0077 5.6 0.6 11 46-56 16-26 (29)
3 d1hnra_ a.155.1.1 (A:) H1 prot 3.4 84 0.0061 6.3 -0.7 15 762-779 18-32 (47)
4 d1of5b_ d.17.4.2 (B:) mRNA tra 3.2 1.2E+02 0.009 5.1 0.2 12 755-766 123-134 (165)
5 d1t1ja_ c.23.14.2 (A:) Hypothe 3.1 1.2E+02 0.0091 5.1 0.2 14 753-766 81-94 (119)
6 d2huga1 b.34.13.2 (A:3-57) CpS 3.1 1.3E+02 0.0094 5.0 0.0 15 724-738 37-51 (55)
7 d1oh4a_ b.18.1.18 (A:) Beta-ma 2.2 1.4E+02 0.011 4.6 -0.6 11 753-763 48-58 (174)
8 d2h62a1 g.17.1.2 (A:12-114) Bo 2.2 1.9E+02 0.014 3.8 0.4 5 759-763 16-20 (103)
9 d2p4ka1 a.2.11.1 (A:1-83) Mn s 2.2 1.9E+02 0.014 3.8 1.1 12 814-825 1-12 (83)
10 d1bsma1 a.2.11.1 (A:1-86) Camb 2.2 1.9E+02 0.014 3.7 1.1 13 813-825 1-13 (86)
No 1
>d1g6ea_ b.11.1.6 (A:) Antifungal protein AFP1 {Streptomyces tendae, tu901 [TaxId: 1932]}
Probab=3.90 E-value=69 Score=6.93 Aligned_cols=17 Identities=24% Similarity=0.769 Sum_probs=12.0
Q ss_pred CCCCCCCCCCCCCCCCCC
Q ss_conf 999988887886556644
Q 002543 748 NPVPEKPNLIPGWGQWTD 765 (910)
Q Consensus 748 ~pk~e~D~tLPGWGsW~G 765 (910)
.|.- ...||.-||||--
T Consensus 59 ~prl-etitl~kw~sw~p 75 (87)
T d1g6ea_ 59 DPRL-ETITLQKWGSWNP 75 (87)
T ss_dssp TTCE-EEEEECTTEEECC
T ss_pred CCCE-EEEEHHHHCCCCC
T ss_conf 8521-5898567268999
No 2
>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.58 E-value=1.1e+02 Score=5.60 Aligned_cols=11 Identities=45% Similarity=0.679 Sum_probs=7.1
Q ss_pred CCHHHHHHHHH
Q ss_conf 97357999732
Q 002543 46 LPNSLRKEIDR 56 (910)
Q Consensus 46 ~~~~~~~~~~~ 56 (910)
-||||||++-.
T Consensus 16 dPSSLRKH~k~ 26 (29)
T d2glia5 16 DPSSLRKHVKT 26 (29)
T ss_dssp SHHHHHHHHHH
T ss_pred CHHHHHHHHHH
T ss_conf 88999998785
No 3
>d1hnra_ a.155.1.1 (A:) H1 protein (H-NS) {Escherichia coli [TaxId: 562]}
Probab=3.40 E-value=84 Score=6.32 Aligned_cols=15 Identities=27% Similarity=0.581 Sum_probs=7.4
Q ss_pred CCCCCCCCCCCCCCCHHH
Q ss_conf 664453336999840345
Q 002543 762 QWTDVQRKKGVPSWMLDE 779 (910)
Q Consensus 762 sW~G~~~Kk~~ps~~~~~ 779 (910)
.|+|.+.+ |.||...
T Consensus 18 tWTGrGR~---P~w~~~~ 32 (47)
T d1hnra_ 18 TWTGQGRT---PAVIKKA 32 (47)
T ss_dssp ECCTTSSC---CSHHHHH
T ss_pred EEECCCCC---CHHHHHH
T ss_conf 43468968---7899999
No 4
>d1of5b_ d.17.4.2 (B:) mRNA transport regulator MTR2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=3.15 E-value=1.2e+02 Score=5.12 Aligned_cols=12 Identities=25% Similarity=0.695 Sum_probs=9.5
Q ss_pred CCCCCCCCCCCC
Q ss_conf 878865566445
Q 002543 755 NLIPGWGQWTDV 766 (910)
Q Consensus 755 ~tLPGWGsW~G~ 766 (910)
.+-|=||+|-|+
T Consensus 123 ~~rp~wg~~fg~ 134 (165)
T d1of5b_ 123 KPRPLWGPYFGI 134 (165)
T ss_dssp -----CCCCEEE
T ss_pred CCCCCCCCCCCE
T ss_conf 688533134350
No 5
>d1t1ja_ c.23.14.2 (A:) Hypothetical protein PA1492 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=3.14 E-value=1.2e+02 Score=5.10 Aligned_cols=14 Identities=21% Similarity=0.494 Sum_probs=12.3
Q ss_pred CCCCCCCCCCCCCC
Q ss_conf 88878865566445
Q 002543 753 KPNLIPGWGQWTDV 766 (910)
Q Consensus 753 ~D~tLPGWGsW~G~ 766 (910)
+-++||||-.=+|+
T Consensus 81 IvL~LpGWe~S~Gi 94 (119)
T d1t1ja_ 81 IVLDLPGWRDSAGI 94 (119)
T ss_dssp EECCCTTGGGCHHH
T ss_pred EEEECCCCCCCCCH
T ss_conf 37756884333038
No 6
>d2huga1 b.34.13.2 (A:3-57) CpSRP43 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=3.06 E-value=1.3e+02 Score=5.00 Aligned_cols=15 Identities=27% Similarity=0.601 Sum_probs=10.7
Q ss_pred HHHCCCCCHHHHHHH
Q ss_conf 996089955887899
Q 002543 724 RLAFAGDDVEEDFEE 738 (910)
Q Consensus 724 keAFAgDDVv~eF~k 738 (910)
..+|..+|||.||+.
T Consensus 37 ~a~~Ia~Dvv~dfEa 51 (55)
T d2huga1 37 KGVHVAEDVAKDYED 51 (55)
T ss_dssp CTTBCCHHHHHTTHH
T ss_pred CHHHHHHHHHHHHHC
T ss_conf 278778999999982
No 7
>d1oh4a_ b.18.1.18 (A:) Beta-mannosidase, C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=2.25 E-value=1.4e+02 Score=4.64 Aligned_cols=11 Identities=27% Similarity=0.658 Sum_probs=0.0
Q ss_pred CCCCCCCCCCC
Q ss_conf 88878865566
Q 002543 753 KPNLIPGWGQW 763 (910)
Q Consensus 753 ~D~tLPGWGsW 763 (910)
+++.+|||.+|
T Consensus 48 ~nV~~~g~~~W 58 (174)
T d1oh4a_ 48 LNVKLPGKSDW 58 (174)
T ss_dssp EEEEECSSSSC
T ss_pred EEEECCCCCCH
T ss_conf 99874787887
No 8
>d2h62a1 g.17.1.2 (A:12-114) Bone morphogenetic protein-2 (BMP-2) {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.22 E-value=1.9e+02 Score=3.82 Aligned_cols=5 Identities=60% Similarity=2.415 Sum_probs=0.0
Q ss_pred CCCCC
Q ss_conf 65566
Q 002543 759 GWGQW 763 (910)
Q Consensus 759 GWGsW 763 (910)
||+.|
T Consensus 16 GW~~w 20 (103)
T d2h62a1 16 GWNDW 20 (103)
T ss_dssp TCTTT
T ss_pred CCCCE
T ss_conf 89455
No 9
>d2p4ka1 a.2.11.1 (A:1-83) Mn superoxide dismutase (MnSOD) {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.20 E-value=1.9e+02 Score=3.78 Aligned_cols=12 Identities=33% Similarity=0.609 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCC
Q ss_conf 002388999888
Q 002543 814 KLHTKTLPYPFT 825 (910)
Q Consensus 814 Kyqv~~LPfPFt 825 (910)
||.+..|||+|.
T Consensus 1 k~~Lp~LpY~y~ 12 (83)
T d2p4ka1 1 KHSLPDLPYDYG 12 (83)
T ss_dssp CCCCCCCSSCTT
T ss_pred CCCCCCCCCCCC
T ss_conf 998999999855
No 10
>d1bsma1 a.2.11.1 (A:1-86) Cambialistic superoxide dismutase {Propionibacterium shermanii [TaxId: 1752]}
Probab=2.17 E-value=1.9e+02 Score=3.74 Aligned_cols=13 Identities=23% Similarity=0.547 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCC
Q ss_conf 0002388999888
Q 002543 813 EKLHTKTLPYPFT 825 (910)
Q Consensus 813 ~Kyqv~~LPfPFt 825 (910)
+.|.+..|||+|.
T Consensus 1 ~~f~Lp~LPY~~d 13 (86)
T d1bsma1 1 AVYTLPELPYDYS 13 (86)
T ss_dssp CCSCCCCCSSCTT
T ss_pred CCCCCCCCCCCCC
T ss_conf 9365899999845
Done!