Query 002544
Match_columns 910
No_of_seqs 407 out of 1073
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 02:08:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002544.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002544hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02841 GBP_C: Guanylate-bind 100.0 3.2E-36 6.9E-41 329.5 34.8 247 155-404 1-257 (297)
2 PF02263 GBP: Guanylate-bindin 100.0 2.7E-32 5.8E-37 293.0 5.1 153 1-154 108-260 (260)
3 KOG2037 Guanylate-binding prot 99.9 5.8E-22 1.3E-26 226.1 22.9 327 1-364 115-460 (552)
4 KOG0161 Myosin class II heavy 99.9 1E-16 2.2E-21 203.7 62.8 407 348-784 1207-1652(1930)
5 KOG0161 Myosin class II heavy 99.9 2E-15 4.2E-20 192.3 71.7 437 347-796 1255-1748(1930)
6 PF01576 Myosin_tail_1: Myosin 99.8 8.1E-20 1.8E-24 225.0 0.0 419 340-788 141-599 (859)
7 cd01851 GBP Guanylate-binding 99.7 3.1E-18 6.6E-23 180.3 9.7 128 1-147 94-223 (224)
8 PF01576 Myosin_tail_1: Myosin 99.7 1.1E-18 2.3E-23 215.2 0.0 348 347-726 197-565 (859)
9 KOG2037 Guanylate-binding prot 99.6 2.4E-14 5.1E-19 164.2 21.4 257 2-272 178-446 (552)
10 PRK02224 chromosome segregatio 99.5 1.1E-08 2.5E-13 129.5 65.0 78 707-786 572-649 (880)
11 COG1196 Smc Chromosome segrega 99.4 2.2E-06 4.8E-11 111.0 74.5 236 546-781 758-1001(1163)
12 PRK03918 chromosome segregatio 99.4 1.3E-06 2.8E-11 110.9 70.9 6 365-370 207-212 (880)
13 PRK03918 chromosome segregatio 99.4 1.9E-06 4.2E-11 109.4 72.2 31 349-379 205-235 (880)
14 TIGR02168 SMC_prok_B chromosom 99.4 8.5E-07 1.8E-11 116.1 70.5 9 44-52 20-28 (1179)
15 TIGR02168 SMC_prok_B chromosom 99.4 1.1E-06 2.4E-11 115.0 69.9 6 155-160 115-120 (1179)
16 TIGR00606 rad50 rad50. This fa 99.4 6.3E-06 1.4E-10 108.2 75.7 46 734-781 1080-1125(1311)
17 PF10174 Cast: RIM-binding pro 99.3 3.7E-06 8E-11 101.7 62.1 155 341-499 228-392 (775)
18 PF10174 Cast: RIM-binding pro 99.3 1.1E-05 2.4E-10 97.7 63.0 62 721-783 465-526 (775)
19 TIGR00606 rad50 rad50. This fa 99.3 5.3E-05 1.2E-09 99.6 82.1 65 713-780 1027-1091(1311)
20 TIGR02169 SMC_prok_A chromosom 99.3 5.3E-05 1.2E-09 99.3 81.0 16 154-169 112-127 (1164)
21 PF12128 DUF3584: Protein of u 99.3 5E-05 1.1E-09 98.8 74.5 63 555-617 471-533 (1201)
22 COG1196 Smc Chromosome segrega 99.2 7.6E-05 1.6E-09 97.0 79.8 182 599-781 734-915 (1163)
23 TIGR02169 SMC_prok_A chromosom 99.2 1.5E-06 3.2E-11 113.8 54.4 57 558-614 292-348 (1164)
24 KOG0996 Structural maintenance 99.1 8.1E-05 1.8E-09 90.4 75.5 42 171-212 255-299 (1293)
25 PF05701 WEMBL: Weak chloropla 99.1 6.5E-05 1.4E-09 89.0 61.7 98 672-770 330-427 (522)
26 PF12128 DUF3584: Protein of u 99.1 0.00022 4.8E-09 92.9 69.8 87 344-430 299-385 (1201)
27 KOG4674 Uncharacterized conser 99.1 0.0002 4.2E-09 92.0 77.8 76 705-781 1241-1324(1822)
28 PF07888 CALCOCO1: Calcium bin 99.1 2.4E-05 5.2E-10 90.1 49.6 50 552-601 282-331 (546)
29 KOG4674 Uncharacterized conser 99.1 0.00026 5.7E-09 90.9 73.3 190 589-782 385-590 (1822)
30 KOG0996 Structural maintenance 99.0 0.00022 4.9E-09 86.8 70.5 60 737-796 964-1023(1293)
31 PRK04778 septation ring format 99.0 0.00014 2.9E-09 87.5 55.8 237 552-797 255-526 (569)
32 KOG4643 Uncharacterized coiled 99.0 0.00013 2.7E-09 87.3 53.0 67 561-627 395-461 (1195)
33 PF07888 CALCOCO1: Calcium bin 99.0 5.8E-05 1.2E-09 87.1 49.2 97 540-639 291-387 (546)
34 KOG0976 Rho/Rac1-interacting s 99.0 0.00019 4.2E-09 83.4 56.9 115 552-666 329-446 (1265)
35 KOG0976 Rho/Rac1-interacting s 99.0 0.00028 6E-09 82.1 58.3 80 575-661 324-403 (1265)
36 PF05701 WEMBL: Weak chloropla 98.9 0.00038 8.2E-09 82.6 64.7 36 411-446 116-151 (522)
37 PF00038 Filament: Intermediat 98.9 7.9E-05 1.7E-09 82.9 42.4 101 385-503 49-149 (312)
38 PF00261 Tropomyosin: Tropomyo 98.9 4.2E-06 9.1E-11 89.0 30.6 223 537-767 6-228 (237)
39 PF00261 Tropomyosin: Tropomyo 98.8 6.6E-06 1.4E-10 87.5 31.2 90 606-695 96-185 (237)
40 KOG0250 DNA repair protein RAD 98.8 0.0015 3.2E-08 80.0 67.7 33 336-368 220-252 (1074)
41 KOG0971 Microtubule-associated 98.8 0.00083 1.8E-08 79.4 47.6 140 546-693 403-546 (1243)
42 PRK04778 septation ring format 98.7 0.0022 4.8E-08 77.1 53.4 17 455-471 228-244 (569)
43 PF00038 Filament: Intermediat 98.7 0.00057 1.2E-08 76.1 42.7 46 452-497 49-94 (312)
44 KOG0933 Structural maintenance 98.6 0.0018 4E-08 77.9 45.8 210 394-617 681-893 (1174)
45 KOG0977 Nuclear envelope prote 98.6 0.00066 1.4E-08 78.5 41.3 131 452-615 87-217 (546)
46 PRK04863 mukB cell division pr 98.6 0.0084 1.8E-07 78.6 58.5 15 318-332 263-277 (1486)
47 KOG0971 Microtubule-associated 98.6 0.0027 6E-08 75.3 43.4 54 416-469 229-288 (1243)
48 PF06160 EzrA: Septation ring 98.5 0.0064 1.4E-07 72.9 58.4 245 553-807 252-512 (560)
49 KOG0612 Rho-associated, coiled 98.5 0.0088 1.9E-07 73.8 50.2 19 136-154 186-206 (1317)
50 KOG0994 Extracellular matrix g 98.5 0.0078 1.7E-07 73.1 57.3 133 553-696 1511-1643(1758)
51 PF05483 SCP-1: Synaptonemal c 98.5 0.0056 1.2E-07 71.2 76.0 187 576-777 445-649 (786)
52 KOG0977 Nuclear envelope prote 98.5 0.0012 2.7E-08 76.3 38.7 145 456-604 41-185 (546)
53 KOG0994 Extracellular matrix g 98.5 0.0087 1.9E-07 72.7 56.8 43 754-796 1686-1732(1758)
54 KOG0250 DNA repair protein RAD 98.5 0.01 2.2E-07 72.9 69.4 64 553-616 661-724 (1074)
55 KOG0612 Rho-associated, coiled 98.4 0.014 3.1E-07 72.1 50.6 24 741-764 791-814 (1317)
56 PRK04863 mukB cell division pr 98.3 0.038 8.3E-07 72.6 57.8 35 281-315 210-244 (1486)
57 PF05483 SCP-1: Synaptonemal c 98.3 0.018 3.9E-07 67.1 74.6 89 694-782 676-764 (786)
58 KOG0963 Transcription factor/C 98.2 0.025 5.4E-07 65.7 42.1 91 398-488 183-273 (629)
59 KOG1029 Endocytic adaptor prot 98.2 0.027 5.8E-07 66.2 39.9 74 535-608 426-499 (1118)
60 KOG0964 Structural maintenance 98.2 0.039 8.4E-07 66.7 64.8 157 338-498 329-494 (1200)
61 KOG0964 Structural maintenance 98.2 0.046 1E-06 66.1 67.1 49 737-785 848-896 (1200)
62 PHA02562 46 endonuclease subun 98.1 0.0024 5.1E-08 77.2 32.3 67 357-423 180-246 (562)
63 KOG4643 Uncharacterized coiled 98.1 0.05 1.1E-06 66.0 59.1 53 385-441 200-252 (1195)
64 PF05557 MAD: Mitotic checkpoi 98.1 1.8E-06 3.9E-11 106.6 5.1 32 751-782 504-535 (722)
65 COG0419 SbcC ATPase involved i 98.1 0.091 2E-06 67.1 70.8 9 367-375 234-242 (908)
66 KOG1003 Actin filament-coating 98.1 0.0078 1.7E-07 60.0 27.8 154 456-635 45-198 (205)
67 KOG1029 Endocytic adaptor prot 98.0 0.062 1.3E-06 63.3 39.2 78 534-611 446-523 (1118)
68 PF05622 HOOK: HOOK protein; 98.0 1E-06 2.3E-11 108.4 0.0 22 192-213 68-90 (713)
69 PF09730 BicD: Microtubule-ass 98.0 0.081 1.8E-06 64.0 48.9 113 347-471 37-149 (717)
70 PF09726 Macoilin: Transmembra 98.0 0.0088 1.9E-07 72.7 32.3 92 415-511 422-513 (697)
71 KOG0946 ER-Golgi vesicle-tethe 98.0 0.025 5.3E-07 67.1 33.9 14 100-113 354-367 (970)
72 KOG0933 Structural maintenance 98.0 0.11 2.4E-06 63.3 69.6 131 631-762 802-932 (1174)
73 PRK11637 AmiB activator; Provi 97.9 0.014 3.1E-07 67.9 32.0 70 545-614 53-122 (428)
74 PF09726 Macoilin: Transmembra 97.9 0.012 2.6E-07 71.6 32.1 86 536-621 422-514 (697)
75 KOG0963 Transcription factor/C 97.9 0.088 1.9E-06 61.3 47.8 243 534-784 184-438 (629)
76 KOG4673 Transcription factor T 97.9 0.093 2E-06 61.1 52.2 41 741-781 709-749 (961)
77 PF14915 CCDC144C: CCDC144C pr 97.9 0.051 1.1E-06 57.9 43.4 98 553-650 137-234 (305)
78 PF05667 DUF812: Protein of un 97.9 0.057 1.2E-06 64.6 36.3 54 575-628 485-538 (594)
79 PRK11637 AmiB activator; Provi 97.9 0.022 4.8E-07 66.3 32.4 78 534-611 49-126 (428)
80 PF15070 GOLGA2L5: Putative go 97.9 0.13 2.9E-06 61.8 54.2 14 869-882 573-586 (617)
81 KOG0995 Centromere-associated 97.8 0.11 2.4E-06 60.0 49.5 209 387-599 270-485 (581)
82 PF05557 MAD: Mitotic checkpoi 97.8 3.3E-05 7.1E-10 95.5 8.3 69 552-620 356-424 (722)
83 KOG4593 Mitotic checkpoint pro 97.8 0.15 3.2E-06 60.2 60.4 121 669-795 458-597 (716)
84 KOG0978 E3 ubiquitin ligase in 97.8 0.18 3.8E-06 60.5 53.6 78 540-617 455-532 (698)
85 KOG0946 ER-Golgi vesicle-tethe 97.8 0.19 4.2E-06 59.9 39.5 42 400-441 653-694 (970)
86 PF05010 TACC: Transforming ac 97.7 0.075 1.6E-06 54.8 29.5 139 348-497 20-162 (207)
87 PF06160 EzrA: Septation ring 97.7 0.22 4.8E-06 59.9 61.0 56 349-408 99-154 (560)
88 KOG0995 Centromere-associated 97.7 0.2 4.2E-06 58.1 57.7 31 349-379 292-322 (581)
89 KOG0962 DNA repair protein RAD 97.6 0.41 8.9E-06 60.8 51.5 42 294-335 628-673 (1294)
90 PF09728 Taxilin: Myosin-like 97.6 0.16 3.6E-06 56.1 44.9 26 451-476 108-133 (309)
91 COG4942 Membrane-bound metallo 97.6 0.19 4.2E-06 56.7 33.2 72 540-611 39-110 (420)
92 KOG0978 E3 ubiquitin ligase in 97.6 0.31 6.6E-06 58.6 54.9 68 681-749 533-600 (698)
93 KOG1003 Actin filament-coating 97.6 0.096 2.1E-06 52.4 28.4 142 597-746 55-196 (205)
94 TIGR03185 DNA_S_dndD DNA sulfu 97.6 0.38 8.2E-06 59.2 45.3 80 392-471 204-283 (650)
95 PF05879 RHD3: Root hair defec 97.6 0.012 2.7E-07 72.5 25.6 233 45-316 123-386 (742)
96 KOG4673 Transcription factor T 97.5 0.33 7.1E-06 56.8 56.4 24 552-575 611-634 (961)
97 PF14915 CCDC144C: CCDC144C pr 97.5 0.2 4.4E-06 53.5 42.9 76 539-614 151-226 (305)
98 PF05622 HOOK: HOOK protein; 97.5 6.3E-05 1.4E-09 92.9 3.6 9 317-325 123-131 (713)
99 KOG0018 Structural maintenance 97.5 0.58 1.3E-05 57.8 41.2 67 414-492 156-222 (1141)
100 KOG0980 Actin-binding protein 97.5 0.51 1.1E-05 57.1 35.3 99 625-726 447-545 (980)
101 COG1340 Uncharacterized archae 97.4 0.25 5.5E-06 53.2 37.0 69 530-598 32-100 (294)
102 PRK11281 hypothetical protein; 97.4 0.87 1.9E-05 58.5 41.2 34 455-488 133-166 (1113)
103 PF15070 GOLGA2L5: Putative go 97.4 0.64 1.4E-05 56.1 53.6 58 360-417 6-63 (617)
104 COG1579 Zn-ribbon protein, pos 97.3 0.13 2.7E-06 54.2 25.3 7 834-840 218-224 (239)
105 COG1340 Uncharacterized archae 97.3 0.35 7.5E-06 52.2 37.7 80 537-616 163-242 (294)
106 KOG0999 Microtubule-associated 97.2 0.67 1.5E-05 53.1 43.8 84 533-616 108-191 (772)
107 PF05667 DUF812: Protein of un 97.2 0.92 2E-05 54.5 37.8 92 523-614 410-510 (594)
108 PF14662 CCDC155: Coiled-coil 97.1 0.37 7.9E-06 48.5 28.7 64 557-620 78-141 (193)
109 PF06008 Laminin_I: Laminin Do 97.1 0.61 1.3E-05 50.6 32.7 91 514-604 153-243 (264)
110 PF09728 Taxilin: Myosin-like 97.1 0.7 1.5E-05 51.2 43.4 81 582-662 203-283 (309)
111 KOG0980 Actin-binding protein 97.1 1.2 2.7E-05 53.9 36.6 138 501-639 345-482 (980)
112 PF05010 TACC: Transforming ac 97.1 0.49 1.1E-05 49.0 31.2 56 472-535 10-65 (207)
113 COG4372 Uncharacterized protei 97.0 0.8 1.7E-05 50.4 33.2 62 553-614 217-278 (499)
114 PRK09039 hypothetical protein; 96.9 0.26 5.7E-06 55.4 24.4 27 674-700 139-165 (343)
115 COG4477 EzrA Negative regulato 96.9 1.4 3E-05 50.9 46.7 225 569-807 276-515 (570)
116 PF02841 GBP_C: Guanylate-bind 96.8 0.54 1.2E-05 51.9 25.5 38 201-238 12-54 (297)
117 PF09730 BicD: Microtubule-ass 96.8 2.2 4.7E-05 52.1 54.9 208 594-806 264-488 (717)
118 PF14662 CCDC155: Coiled-coil 96.8 0.73 1.6E-05 46.5 28.1 89 657-746 80-168 (193)
119 PF07926 TPR_MLP1_2: TPR/MLP1/ 96.7 0.25 5.5E-06 47.6 19.7 120 351-481 10-129 (132)
120 PRK09039 hypothetical protein; 96.7 0.43 9.3E-06 53.7 24.4 6 672-677 158-163 (343)
121 PF15619 Lebercilin: Ciliary p 96.7 0.95 2.1E-05 46.5 26.6 26 662-687 122-147 (194)
122 PF10473 CENP-F_leu_zip: Leuci 96.5 0.75 1.6E-05 44.5 21.0 76 545-620 16-91 (140)
123 KOG0018 Structural maintenance 96.5 3.7 7.9E-05 51.2 69.0 93 139-239 86-183 (1141)
124 COG4477 EzrA Negative regulato 96.5 2.4 5.2E-05 49.0 55.3 92 566-657 315-409 (570)
125 KOG4809 Rab6 GTPase-interactin 96.5 2.5 5.4E-05 48.7 38.9 137 364-527 312-448 (654)
126 PF15619 Lebercilin: Ciliary p 96.4 1.4 2.9E-05 45.4 26.5 70 704-777 122-191 (194)
127 PF15066 CAGE1: Cancer-associa 96.4 2.4 5.1E-05 48.1 28.3 105 575-679 363-467 (527)
128 COG4942 Membrane-bound metallo 96.4 2.6 5.6E-05 47.9 33.4 37 709-746 212-248 (420)
129 PF05911 DUF869: Plant protein 96.2 5.2 0.00011 49.5 39.8 115 529-643 82-203 (769)
130 PF07926 TPR_MLP1_2: TPR/MLP1/ 96.2 0.98 2.1E-05 43.5 19.9 45 454-498 7-51 (132)
131 PF09789 DUF2353: Uncharacteri 96.2 1.6 3.5E-05 47.9 23.7 102 387-488 13-117 (319)
132 PF07111 HCR: Alpha helical co 96.1 4.6 0.0001 48.3 69.5 29 736-764 589-617 (739)
133 COG4372 Uncharacterized protei 96.1 3 6.6E-05 46.0 35.7 12 883-894 455-467 (499)
134 KOG4593 Mitotic checkpoint pro 96.0 5.2 0.00011 47.8 61.4 49 398-446 120-168 (716)
135 PF07111 HCR: Alpha helical co 95.9 5.7 0.00012 47.5 63.8 124 431-559 139-276 (739)
136 PF13514 AAA_27: AAA domain 95.9 9.6 0.00021 50.1 52.8 15 63-78 68-82 (1111)
137 KOG1899 LAR transmembrane tyro 95.7 2.1 4.6E-05 49.9 22.6 205 562-781 106-322 (861)
138 PRK10929 putative mechanosensi 95.5 12 0.00025 48.5 45.9 9 354-362 26-34 (1109)
139 KOG1899 LAR transmembrane tyro 95.5 2.2 4.8E-05 49.7 21.8 21 866-886 547-567 (861)
140 PRK10929 putative mechanosensi 95.5 12 0.00026 48.3 45.6 91 350-440 64-159 (1109)
141 PF10481 CENP-F_N: Cenp-F N-te 95.5 3 6.5E-05 44.1 20.8 119 488-617 6-124 (307)
142 TIGR03007 pepcterm_ChnLen poly 95.4 7.1 0.00015 46.5 27.4 12 790-801 438-449 (498)
143 KOG2203 GTP-binding protein [G 95.3 7.6 0.00017 45.3 25.1 129 48-208 163-305 (772)
144 TIGR01843 type_I_hlyD type I s 95.3 5 0.00011 46.3 25.3 17 710-726 249-265 (423)
145 KOG0962 DNA repair protein RAD 95.3 13 0.00029 47.8 72.8 34 158-191 359-392 (1294)
146 PF04849 HAP1_N: HAP1 N-termin 95.3 5.8 0.00013 43.4 29.4 99 625-726 162-260 (306)
147 KOG0999 Microtubule-associated 95.2 7.9 0.00017 44.8 48.5 57 670-726 316-372 (772)
148 TIGR01843 type_I_hlyD type I s 95.2 5.7 0.00012 45.9 25.3 24 738-761 248-271 (423)
149 TIGR03185 DNA_S_dndD DNA sulfu 95.1 12 0.00027 46.1 44.6 10 674-683 451-460 (650)
150 PF04849 HAP1_N: HAP1 N-termin 95.1 6.6 0.00014 42.9 30.2 107 520-633 194-300 (306)
151 PF13851 GAS: Growth-arrest sp 95.0 5.3 0.00012 41.4 29.3 55 534-588 29-83 (201)
152 PRK10698 phage shock protein P 95.0 5.8 0.00013 41.8 25.0 86 413-498 47-140 (222)
153 PF06008 Laminin_I: Laminin Do 94.8 7.4 0.00016 42.2 32.9 62 534-595 54-115 (264)
154 TIGR01005 eps_transp_fam exopo 94.8 7.2 0.00016 49.0 26.2 32 546-577 194-225 (754)
155 PF09787 Golgin_A5: Golgin sub 94.7 13 0.00028 44.4 37.8 28 350-377 108-135 (511)
156 PF14073 Cep57_CLD: Centrosome 94.6 5.4 0.00012 40.0 23.0 30 452-481 52-81 (178)
157 PF09755 DUF2046: Uncharacteri 94.6 8.5 0.00019 42.0 36.1 65 555-619 137-202 (310)
158 PF09787 Golgin_A5: Golgin sub 94.5 14 0.00031 44.0 37.1 17 710-726 358-374 (511)
159 COG5185 HEC1 Protein involved 94.3 12 0.00026 42.5 43.9 14 316-329 185-198 (622)
160 PF13851 GAS: Growth-arrest sp 94.2 7.9 0.00017 40.1 28.9 57 382-438 26-82 (201)
161 TIGR03007 pepcterm_ChnLen poly 93.9 17 0.00036 43.3 25.6 16 576-591 256-271 (498)
162 PF09789 DUF2353: Uncharacteri 93.9 13 0.00027 41.2 27.1 35 667-701 128-162 (319)
163 TIGR03017 EpsF chain length de 93.8 17 0.00036 42.5 28.3 19 599-617 258-276 (444)
164 TIGR02680 conserved hypothetic 93.6 36 0.00078 45.7 74.2 83 575-657 743-827 (1353)
165 PF04012 PspA_IM30: PspA/IM30 93.5 11 0.00024 39.5 23.9 80 418-497 51-138 (221)
166 COG4026 Uncharacterized protei 93.5 1.4 3E-05 45.0 12.8 84 554-637 129-212 (290)
167 PF00769 ERM: Ezrin/radixin/mo 93.4 6.3 0.00014 42.2 18.7 63 555-617 21-83 (246)
168 PF06785 UPF0242: Uncharacteri 93.3 14 0.00031 40.2 20.4 68 555-622 87-154 (401)
169 KOG0249 LAR-interacting protei 93.3 10 0.00022 45.4 20.8 41 737-777 217-257 (916)
170 KOG4360 Uncharacterized coiled 93.2 20 0.00043 41.4 24.9 98 538-635 204-301 (596)
171 PF12325 TMF_TATA_bd: TATA ele 93.2 5.5 0.00012 37.6 15.5 42 455-496 73-114 (120)
172 KOG0979 Structural maintenance 93.0 32 0.00069 43.1 36.2 19 128-146 130-148 (1072)
173 PF13870 DUF4201: Domain of un 92.9 12 0.00025 38.0 24.0 63 576-638 44-106 (177)
174 KOG1853 LIS1-interacting prote 92.8 14 0.00031 38.6 24.2 10 829-838 299-308 (333)
175 PF06005 DUF904: Protein of un 92.6 2.8 6.1E-05 35.8 11.5 67 561-627 5-71 (72)
176 PF14073 Cep57_CLD: Centrosome 92.6 13 0.00027 37.5 22.3 80 353-432 6-85 (178)
177 PF15066 CAGE1: Cancer-associa 92.5 23 0.0005 40.4 30.1 119 569-697 385-503 (527)
178 PF08614 ATG16: Autophagy prot 92.4 2.3 5E-05 43.9 13.3 25 557-581 99-123 (194)
179 PF12325 TMF_TATA_bd: TATA ele 92.4 9.3 0.0002 36.1 15.9 23 568-590 38-60 (120)
180 KOG0804 Cytoplasmic Zn-finger 92.2 7.8 0.00017 44.0 17.5 45 399-443 377-421 (493)
181 PF15254 CCDC14: Coiled-coil d 92.1 35 0.00077 41.5 25.8 47 571-617 431-477 (861)
182 PF13514 AAA_27: AAA domain 92.1 52 0.0011 43.4 69.5 15 101-115 23-37 (1111)
183 PF10498 IFT57: Intra-flagella 91.9 10 0.00023 42.8 18.6 13 431-443 190-202 (359)
184 PF00769 ERM: Ezrin/radixin/mo 91.9 12 0.00027 40.0 18.4 21 874-896 187-207 (246)
185 PF08614 ATG16: Autophagy prot 91.9 2.9 6.2E-05 43.1 13.2 16 579-594 93-108 (194)
186 PF08317 Spc7: Spc7 kinetochor 91.6 27 0.00058 39.1 30.3 16 462-477 73-88 (325)
187 PF10168 Nup88: Nuclear pore c 91.6 8.7 0.00019 47.6 18.9 40 457-496 565-604 (717)
188 PF10498 IFT57: Intra-flagella 91.6 21 0.00045 40.5 20.4 78 557-637 217-294 (359)
189 PF04111 APG6: Autophagy prote 91.1 4 8.7E-05 45.4 14.1 9 691-699 125-133 (314)
190 KOG1853 LIS1-interacting prote 91.1 22 0.00048 37.2 23.3 28 694-721 134-161 (333)
191 COG2433 Uncharacterized conser 91.0 10 0.00022 44.8 17.4 28 145-172 72-103 (652)
192 PF06785 UPF0242: Uncharacteri 91.0 25 0.00054 38.4 19.0 57 386-442 130-186 (401)
193 COG5185 HEC1 Protein involved 91.0 34 0.00073 39.2 45.5 68 402-480 293-360 (622)
194 KOG1937 Uncharacterized conser 90.9 34 0.00074 39.0 38.4 30 555-584 347-376 (521)
195 KOG2991 Splicing regulator [RN 90.9 24 0.00051 37.2 27.5 14 294-307 21-34 (330)
196 PRK15422 septal ring assembly 90.8 3 6.5E-05 35.8 9.6 64 563-626 7-77 (79)
197 COG3883 Uncharacterized protei 90.0 31 0.00066 37.1 29.2 44 399-442 33-76 (265)
198 PF12795 MscS_porin: Mechanose 89.8 31 0.00066 36.8 24.6 54 735-788 163-216 (240)
199 PF09755 DUF2046: Uncharacteri 89.7 36 0.00077 37.4 37.9 35 403-437 33-67 (310)
200 PF04111 APG6: Autophagy prote 89.6 7.5 0.00016 43.3 14.7 20 668-687 116-135 (314)
201 PF10481 CENP-F_N: Cenp-F N-te 89.4 22 0.00048 37.9 16.6 114 560-701 18-131 (307)
202 PF15290 Syntaphilin: Golgi-lo 89.3 20 0.00043 38.3 16.3 75 552-654 67-141 (305)
203 COG1842 PspA Phage shock prote 89.2 33 0.0007 36.3 23.2 102 388-496 29-138 (225)
204 TIGR03017 EpsF chain length de 89.2 51 0.0011 38.5 25.4 16 539-554 178-193 (444)
205 PF04012 PspA_IM30: PspA/IM30 88.8 34 0.00073 35.9 25.0 37 577-613 26-62 (221)
206 KOG0249 LAR-interacting protei 88.8 63 0.0014 39.1 27.2 36 452-487 51-86 (916)
207 TIGR00634 recN DNA repair prot 88.8 64 0.0014 39.1 26.7 10 737-746 361-370 (563)
208 COG2433 Uncharacterized conser 88.7 9.2 0.0002 45.1 14.7 35 601-635 473-507 (652)
209 PF05384 DegS: Sensor protein 88.6 28 0.0006 34.7 23.2 43 571-613 24-66 (159)
210 PF06818 Fez1: Fez1; InterPro 88.2 34 0.00074 35.2 22.1 16 365-380 10-25 (202)
211 TIGR02977 phageshock_pspA phag 88.1 38 0.00081 35.6 24.0 83 413-495 47-137 (219)
212 KOG3478 Prefoldin subunit 6, K 87.8 17 0.00037 33.2 12.6 48 738-785 55-104 (120)
213 TIGR02680 conserved hypothetic 87.8 1.2E+02 0.0025 41.0 73.3 11 156-166 140-150 (1353)
214 PRK10246 exonuclease subunit S 87.8 1E+02 0.0022 40.3 69.5 12 292-303 151-162 (1047)
215 PF10212 TTKRSYEDQ: Predicted 87.7 64 0.0014 37.9 21.6 60 552-611 419-478 (518)
216 COG4026 Uncharacterized protei 87.7 5.6 0.00012 40.8 10.7 33 667-699 158-190 (290)
217 PF15254 CCDC14: Coiled-coil d 87.7 77 0.0017 38.8 22.0 15 100-114 136-150 (861)
218 PF11559 ADIP: Afadin- and alp 87.7 30 0.00065 34.0 17.6 81 354-445 55-135 (151)
219 PF12777 MT: Microtubule-bindi 87.2 57 0.0012 36.8 25.3 14 364-377 14-27 (344)
220 PRK10869 recombination and rep 87.1 78 0.0017 38.2 26.3 42 545-586 156-197 (553)
221 PF05335 DUF745: Protein of un 87.1 38 0.00083 34.7 18.2 41 661-701 133-173 (188)
222 PF04065 Not3: Not1 N-terminal 87.0 34 0.00073 36.3 16.6 57 554-610 130-192 (233)
223 COG4717 Uncharacterized conser 86.9 91 0.002 38.7 39.9 62 574-635 774-837 (984)
224 PF05546 She9_MDM33: She9 / Md 86.8 41 0.00089 34.7 20.8 109 386-498 5-119 (207)
225 PF05276 SH3BP5: SH3 domain-bi 86.4 49 0.0011 35.2 30.5 41 562-602 123-163 (239)
226 PF05384 DegS: Sensor protein 85.8 40 0.00086 33.6 22.4 9 737-745 113-121 (159)
227 PF15450 DUF4631: Domain of un 85.8 80 0.0017 37.0 57.3 33 581-613 258-290 (531)
228 smart00787 Spc7 Spc7 kinetocho 85.7 64 0.0014 35.9 31.3 20 561-580 173-192 (312)
229 PRK10869 recombination and rep 85.7 92 0.002 37.7 28.2 15 457-471 185-199 (553)
230 PF15397 DUF4618: Domain of un 85.5 56 0.0012 35.1 32.2 17 426-442 64-80 (258)
231 COG3074 Uncharacterized protei 85.4 16 0.00034 30.5 10.1 35 592-626 43-77 (79)
232 TIGR01000 bacteriocin_acc bact 85.1 86 0.0019 36.9 24.6 19 663-681 296-314 (457)
233 PF05276 SH3BP5: SH3 domain-bi 84.7 59 0.0013 34.6 32.1 16 623-638 128-143 (239)
234 PF10146 zf-C4H2: Zinc finger- 84.6 50 0.0011 35.0 16.6 39 572-610 37-75 (230)
235 KOG0804 Cytoplasmic Zn-finger 84.6 66 0.0014 36.8 18.0 15 170-184 130-144 (493)
236 PF06005 DUF904: Protein of un 84.5 22 0.00047 30.4 11.2 61 386-446 7-67 (72)
237 PF05911 DUF869: Plant protein 84.3 1.2E+02 0.0026 37.9 59.0 152 350-501 119-302 (769)
238 PF12949 HeH: HeH/LEM domain; 84.1 0.68 1.5E-05 33.5 1.7 33 867-903 2-34 (35)
239 KOG1937 Uncharacterized conser 83.6 89 0.0019 35.8 37.5 52 576-627 384-435 (521)
240 PF11932 DUF3450: Protein of u 83.6 68 0.0015 34.4 17.9 17 840-856 195-211 (251)
241 PF15294 Leu_zip: Leucine zipp 83.1 74 0.0016 34.5 23.5 45 448-492 130-174 (278)
242 PF14197 Cep57_CLD_2: Centroso 82.6 19 0.00041 30.5 10.0 58 554-611 6-63 (69)
243 PF15035 Rootletin: Ciliary ro 82.5 61 0.0013 33.1 18.0 50 457-506 127-176 (182)
244 PF06818 Fez1: Fez1; InterPro 82.4 64 0.0014 33.3 23.7 16 684-699 136-151 (202)
245 PLN02939 transferase, transfer 82.1 1.6E+02 0.0035 37.7 31.7 19 539-557 163-181 (977)
246 PF15290 Syntaphilin: Golgi-lo 82.1 61 0.0013 34.8 15.6 32 583-614 70-101 (305)
247 PRK11281 hypothetical protein; 81.4 1.9E+02 0.0041 38.0 51.3 13 534-546 236-248 (1113)
248 PF02037 SAP: SAP domain; Int 81.1 2.7 5.8E-05 30.5 3.9 34 866-905 1-34 (35)
249 PF09738 DUF2051: Double stran 81.0 37 0.00081 37.4 14.4 53 580-632 83-135 (302)
250 COG5283 Phage-related tail pro 80.5 1.9E+02 0.0041 37.5 26.5 14 798-811 227-240 (1213)
251 KOG0982 Centrosomal protein Nu 80.5 1.1E+02 0.0024 34.8 33.7 75 543-617 301-375 (502)
252 PRK10884 SH3 domain-containing 80.2 30 0.00064 36.1 12.7 19 359-377 94-112 (206)
253 PF12329 TMF_DNA_bd: TATA elem 80.0 34 0.00073 29.4 10.9 33 562-594 21-53 (74)
254 PF13870 DUF4201: Domain of un 79.8 72 0.0016 32.2 24.2 29 589-617 43-71 (177)
255 KOG4360 Uncharacterized coiled 79.6 1.3E+02 0.0029 35.1 25.0 99 529-627 202-300 (596)
256 COG3074 Uncharacterized protei 79.5 36 0.00077 28.5 10.5 56 562-617 6-61 (79)
257 KOG2991 Splicing regulator [RN 79.1 91 0.002 33.0 27.1 88 381-471 106-198 (330)
258 KOG4807 F-actin binding protei 78.9 1.2E+02 0.0025 34.1 31.3 17 483-499 350-366 (593)
259 cd07648 F-BAR_FCHO The F-BAR ( 78.8 1E+02 0.0022 33.3 27.5 48 424-471 149-196 (261)
260 PF12329 TMF_DNA_bd: TATA elem 78.6 28 0.00061 29.9 10.0 19 533-551 6-24 (74)
261 KOG0288 WD40 repeat protein Ti 78.5 1.1E+02 0.0024 34.7 16.9 55 557-611 38-92 (459)
262 COG1842 PspA Phage shock prote 77.3 1E+02 0.0022 32.6 24.2 23 458-480 114-136 (225)
263 TIGR01010 BexC_CtrB_KpsE polys 77.1 1.4E+02 0.003 33.9 19.3 30 357-386 169-198 (362)
264 PF13166 AAA_13: AAA domain 76.8 2E+02 0.0044 35.8 28.4 8 176-183 77-84 (712)
265 KOG4809 Rab6 GTPase-interactin 76.4 1.7E+02 0.0036 34.6 43.9 75 537-611 336-410 (654)
266 PF14992 TMCO5: TMCO5 family 76.0 95 0.0021 33.7 15.2 29 581-609 109-137 (280)
267 PRK10698 phage shock protein P 75.9 1.1E+02 0.0024 32.3 27.0 45 455-499 36-80 (222)
268 COG1382 GimC Prefoldin, chaper 75.9 69 0.0015 30.2 12.4 79 349-427 18-107 (119)
269 PF07989 Microtub_assoc: Micro 75.9 30 0.00065 29.8 9.4 59 562-620 2-61 (75)
270 KOG2129 Uncharacterized conser 75.7 1.5E+02 0.0032 33.7 28.2 43 576-618 181-224 (552)
271 PF04582 Reo_sigmaC: Reovirus 75.6 5.5 0.00012 43.9 6.0 57 557-613 32-88 (326)
272 PF06705 SF-assemblin: SF-asse 75.2 1.2E+02 0.0026 32.4 32.9 13 605-617 66-78 (247)
273 PRK03947 prefoldin subunit alp 75.0 83 0.0018 30.4 14.5 21 597-617 96-116 (140)
274 PF15397 DUF4618: Domain of un 72.8 1.4E+02 0.0031 32.1 32.5 41 443-483 67-107 (258)
275 PF04949 Transcrip_act: Transc 72.2 1E+02 0.0022 30.1 18.2 34 530-563 43-76 (159)
276 PF14197 Cep57_CLD_2: Centroso 72.1 59 0.0013 27.6 10.0 57 579-635 3-59 (69)
277 PF06428 Sec2p: GDP/GTP exchan 71.7 6.3 0.00014 35.9 4.5 73 562-634 3-76 (100)
278 PF14992 TMCO5: TMCO5 family 71.5 1.6E+02 0.0034 32.1 16.1 28 672-699 116-143 (280)
279 PF07889 DUF1664: Protein of u 70.5 1E+02 0.0022 29.5 12.9 14 364-377 49-62 (126)
280 PF10234 Cluap1: Clusterin-ass 69.6 1.7E+02 0.0037 31.7 19.6 83 644-726 176-258 (267)
281 PF05335 DUF745: Protein of un 69.4 1.4E+02 0.003 30.6 21.0 103 540-642 68-170 (188)
282 TIGR01000 bacteriocin_acc bact 69.3 2.4E+02 0.0051 33.2 27.0 16 737-752 299-314 (457)
283 PRK09841 cryptic autophosphory 69.2 1.6E+02 0.0036 36.8 17.8 40 537-576 258-297 (726)
284 KOG0240 Kinesin (SMY1 subfamil 69.0 2.5E+02 0.0055 33.4 23.3 11 166-176 138-148 (607)
285 PF03962 Mnd1: Mnd1 family; I 68.7 87 0.0019 32.1 12.6 13 326-338 32-44 (188)
286 PRK09343 prefoldin subunit bet 68.6 1.1E+02 0.0023 29.0 12.4 35 451-485 72-106 (121)
287 PF12777 MT: Microtubule-bindi 68.6 2.1E+02 0.0045 32.3 24.2 27 464-490 75-101 (344)
288 PF09738 DUF2051: Double stran 68.6 1.3E+02 0.0029 33.2 14.6 62 556-617 80-148 (302)
289 KOG3564 GTPase-activating prot 68.5 2.3E+02 0.005 32.9 16.5 82 692-774 27-108 (604)
290 KOG0992 Uncharacterized conser 68.1 2.4E+02 0.0053 32.9 50.2 21 569-589 233-253 (613)
291 PF10212 TTKRSYEDQ: Predicted 67.4 2.6E+02 0.0057 33.0 25.6 19 462-480 307-325 (518)
292 KOG1850 Myosin-like coiled-coi 67.3 2E+02 0.0043 31.6 44.4 29 675-703 295-323 (391)
293 PF15372 DUF4600: Domain of un 67.1 1.2E+02 0.0026 29.0 12.6 54 562-615 53-106 (129)
294 PF07106 TBPIP: Tat binding pr 67.0 53 0.0011 32.9 10.6 58 557-614 76-135 (169)
295 PF08826 DMPK_coil: DMPK coile 66.9 73 0.0016 26.4 9.9 44 683-726 8-51 (61)
296 PF05266 DUF724: Protein of un 66.8 1.6E+02 0.0035 30.3 15.0 51 564-614 128-178 (190)
297 cd07673 F-BAR_FCHO2 The F-BAR 66.7 2E+02 0.0043 31.3 27.0 48 424-471 156-203 (269)
298 KOG0239 Kinesin (KAR3 subfamil 66.6 3.3E+02 0.007 33.8 22.3 18 757-774 300-317 (670)
299 PRK09841 cryptic autophosphory 65.8 3.5E+02 0.0076 33.9 21.7 6 799-804 559-564 (726)
300 PRK11519 tyrosine kinase; Prov 65.7 2.6E+02 0.0057 35.0 18.5 34 544-577 265-298 (719)
301 PF04728 LPP: Lipoprotein leuc 65.2 65 0.0014 26.1 8.3 47 397-443 3-49 (56)
302 PF03148 Tektin: Tektin family 65.1 2.6E+02 0.0056 32.1 42.3 303 381-703 5-369 (384)
303 PF04582 Reo_sigmaC: Reovirus 64.9 13 0.00028 41.0 6.0 60 557-616 39-98 (326)
304 PF07058 Myosin_HC-like: Myosi 64.7 2.2E+02 0.0048 31.1 19.6 28 673-700 60-87 (351)
305 PF03962 Mnd1: Mnd1 family; I 64.5 1.7E+02 0.0038 29.9 14.1 30 557-586 66-95 (188)
306 KOG0288 WD40 repeat protein Ti 64.4 2.6E+02 0.0057 31.9 17.5 6 883-888 260-265 (459)
307 PRK15422 septal ring assembly 64.2 97 0.0021 26.9 10.6 58 385-442 13-70 (79)
308 KOG2129 Uncharacterized conser 64.1 2.6E+02 0.0057 31.8 29.0 11 815-825 383-393 (552)
309 KOG1850 Myosin-like coiled-coi 64.0 2.3E+02 0.005 31.2 44.3 94 514-611 80-173 (391)
310 KOG2751 Beclin-like protein [S 63.3 2.8E+02 0.0061 31.9 16.3 21 667-687 248-268 (447)
311 cd07651 F-BAR_PombeCdc15_like 62.4 2.1E+02 0.0046 30.2 26.7 52 420-471 152-203 (236)
312 PF05278 PEARLI-4: Arabidopsis 62.0 2.4E+02 0.0051 30.6 20.8 42 300-341 96-138 (269)
313 KOG0972 Huntingtin interacting 61.3 2.4E+02 0.0053 30.5 17.2 14 430-443 196-209 (384)
314 PF04899 MbeD_MobD: MbeD/MobD 60.5 1.1E+02 0.0023 26.1 9.8 50 385-434 16-65 (70)
315 PRK10361 DNA recombination pro 60.2 3.5E+02 0.0075 31.9 27.0 30 576-605 167-196 (475)
316 PLN03188 kinesin-12 family pro 59.9 5.3E+02 0.012 34.0 40.6 23 768-790 1240-1262(1320)
317 KOG2150 CCR4-NOT transcription 59.7 3.7E+02 0.0081 32.1 17.2 83 431-518 7-89 (575)
318 PF10205 KLRAQ: Predicted coil 59.3 1.4E+02 0.0031 27.3 11.5 65 548-612 7-71 (102)
319 PF15450 DUF4631: Domain of un 59.2 3.6E+02 0.0079 31.8 61.8 23 782-807 501-523 (531)
320 COG1382 GimC Prefoldin, chaper 59.2 1.6E+02 0.0035 27.8 14.0 33 459-491 72-104 (119)
321 PF08647 BRE1: BRE1 E3 ubiquit 58.7 1.4E+02 0.0031 27.0 13.1 45 550-594 28-72 (96)
322 PLN03229 acetyl-coenzyme A car 58.6 4.4E+02 0.0096 32.7 25.4 35 140-174 137-177 (762)
323 KOG4438 Centromere-associated 58.4 3.4E+02 0.0073 31.2 38.0 31 751-781 408-438 (446)
324 TIGR03582 EF_0829 PRD domain p 58.2 44 0.00096 30.9 7.3 89 132-228 11-103 (107)
325 COG3206 GumC Uncharacterized p 58.2 3.7E+02 0.008 31.6 25.2 43 569-611 287-329 (458)
326 PF15456 Uds1: Up-regulated Du 57.7 1.8E+02 0.0038 27.8 13.9 39 554-593 23-61 (124)
327 KOG4302 Microtubule-associated 57.1 4.5E+02 0.0098 32.3 29.5 30 623-652 160-189 (660)
328 PRK10361 DNA recombination pro 57.0 3.9E+02 0.0085 31.5 27.5 9 738-746 389-397 (475)
329 PF01920 Prefoldin_2: Prefoldi 57.0 1.5E+02 0.0032 26.7 11.5 10 603-612 70-79 (106)
330 PF09731 Mitofilin: Mitochondr 56.9 4.3E+02 0.0094 32.0 26.5 11 750-760 559-569 (582)
331 PF10211 Ax_dynein_light: Axon 56.9 2.4E+02 0.0051 29.0 21.2 10 318-327 78-87 (189)
332 PRK15178 Vi polysaccharide exp 56.3 3.8E+02 0.0083 31.2 17.5 50 677-726 284-333 (434)
333 PF06705 SF-assemblin: SF-asse 56.2 2.8E+02 0.0061 29.6 36.4 21 735-755 203-223 (247)
334 KOG4807 F-actin binding protei 56.2 3.4E+02 0.0074 30.6 29.6 11 49-59 33-43 (593)
335 TIGR02977 phageshock_pspA phag 55.6 2.7E+02 0.0058 29.2 27.1 44 456-499 37-80 (219)
336 PF02050 FliJ: Flagellar FliJ 55.4 1.6E+02 0.0036 26.7 17.4 63 555-617 7-74 (123)
337 PF04949 Transcrip_act: Transc 55.4 2.1E+02 0.0046 27.9 19.2 55 672-726 91-145 (159)
338 KOG3647 Predicted coiled-coil 54.6 3E+02 0.0065 29.5 21.7 71 639-709 114-184 (338)
339 PF08581 Tup_N: Tup N-terminal 54.5 1.5E+02 0.0032 25.9 12.1 47 542-588 7-53 (79)
340 PF04871 Uso1_p115_C: Uso1 / p 54.4 2.1E+02 0.0046 27.7 16.2 33 577-609 80-112 (136)
341 KOG4677 Golgi integral membran 53.2 4.1E+02 0.009 30.7 33.1 48 754-805 442-489 (554)
342 KOG2264 Exostosin EXT1L [Signa 52.0 1.3E+02 0.0029 35.4 11.2 46 698-744 91-136 (907)
343 PF02050 FliJ: Flagellar FliJ 51.9 1.9E+02 0.004 26.3 17.2 42 672-713 52-93 (123)
344 KOG2751 Beclin-like protein [S 51.7 4.3E+02 0.0094 30.5 16.1 11 874-884 426-436 (447)
345 COG3096 MukB Uncharacterized p 51.7 5.5E+02 0.012 31.6 44.0 356 390-761 300-658 (1480)
346 PF10267 Tmemb_cc2: Predicted 51.4 4.3E+02 0.0094 30.4 16.0 9 675-683 308-316 (395)
347 PF05546 She9_MDM33: She9 / Md 51.4 3E+02 0.0065 28.6 16.4 55 560-614 32-86 (207)
348 cd07655 F-BAR_PACSIN The F-BAR 51.2 3.5E+02 0.0075 29.2 26.8 54 418-471 168-221 (258)
349 cd07655 F-BAR_PACSIN The F-BAR 50.9 3.5E+02 0.0076 29.1 27.5 84 411-498 112-195 (258)
350 COG0497 RecN ATPase involved i 50.7 5.2E+02 0.011 31.1 25.8 8 806-813 460-467 (557)
351 TIGR03752 conj_TIGR03752 integ 50.3 1.9E+02 0.0042 33.7 12.3 20 598-617 112-131 (472)
352 PRK12704 phosphodiesterase; Pr 49.3 5.4E+02 0.012 30.9 26.7 7 769-775 190-196 (520)
353 KOG4460 Nuclear pore complex, 48.7 5.3E+02 0.012 30.6 21.4 46 401-446 585-630 (741)
354 PF10267 Tmemb_cc2: Predicted 48.6 4.8E+02 0.01 30.1 16.1 63 711-777 255-318 (395)
355 KOG0982 Centrosomal protein Nu 48.5 4.8E+02 0.01 30.0 32.4 27 715-742 404-430 (502)
356 PF15456 Uds1: Up-regulated Du 48.3 2.5E+02 0.0054 26.8 12.5 7 543-549 26-32 (124)
357 TIGR03752 conj_TIGR03752 integ 48.0 2.1E+02 0.0045 33.5 12.1 23 759-781 118-140 (472)
358 PF14988 DUF4515: Domain of un 47.2 3.5E+02 0.0077 28.1 29.8 52 561-612 150-201 (206)
359 PLN02939 transferase, transfer 46.9 7.6E+02 0.017 31.9 32.4 8 863-870 587-594 (977)
360 KOG4403 Cell surface glycoprot 46.2 5.1E+02 0.011 29.7 19.9 17 389-405 258-274 (575)
361 TIGR00618 sbcc exonuclease Sbc 45.9 8.3E+02 0.018 32.1 65.5 11 293-303 148-158 (1042)
362 PF06120 Phage_HK97_TLTM: Tail 45.6 4.6E+02 0.01 29.0 20.8 37 388-424 72-108 (301)
363 COG1730 GIM5 Predicted prefold 45.0 3.1E+02 0.0068 26.9 13.0 91 350-440 5-144 (145)
364 PF05529 Bap31: B-cell recepto 44.8 1.4E+02 0.0031 30.5 9.6 10 333-342 105-114 (192)
365 KOG3091 Nuclear pore complex, 44.6 5.9E+02 0.013 30.0 17.0 38 551-588 360-397 (508)
366 smart00513 SAP Putative DNA-bi 44.4 32 0.00069 24.8 3.3 34 866-905 1-34 (35)
367 COG5283 Phage-related tail pro 44.4 8.7E+02 0.019 31.9 28.8 111 558-668 27-137 (1213)
368 PF06632 XRCC4: DNA double-str 44.1 3.6E+02 0.0077 30.5 13.1 63 349-411 142-208 (342)
369 PF10805 DUF2730: Protein of u 44.0 2.3E+02 0.0051 26.1 9.8 26 574-599 65-90 (106)
370 KOG0979 Structural maintenance 43.2 8.4E+02 0.018 31.4 65.7 42 387-428 315-356 (1072)
371 TIGR01069 mutS2 MutS2 family p 43.1 6E+02 0.013 32.2 16.3 19 862-880 694-712 (771)
372 PF05791 Bacillus_HBL: Bacillu 43.0 3.8E+02 0.0082 27.3 18.0 69 420-488 105-173 (184)
373 PRK12704 phosphodiesterase; Pr 42.5 6.8E+02 0.015 30.1 25.3 6 815-820 367-372 (520)
374 smart00502 BBC B-Box C-termina 42.2 2.8E+02 0.006 25.5 16.1 7 739-745 82-88 (127)
375 KOG2629 Peroxisomal membrane a 42.0 3E+02 0.0065 30.0 11.3 28 350-377 121-148 (300)
376 TIGR03495 phage_LysB phage lys 41.8 3.4E+02 0.0073 26.3 11.8 61 554-614 34-94 (135)
377 KOG1103 Predicted coiled-coil 41.6 5.3E+02 0.012 28.6 24.0 26 591-616 255-280 (561)
378 PRK15178 Vi polysaccharide exp 41.2 6.4E+02 0.014 29.4 20.9 58 561-618 280-337 (434)
379 KOG0243 Kinesin-like protein [ 40.8 9.4E+02 0.02 31.2 53.2 399 360-768 406-819 (1041)
380 PF04728 LPP: Lipoprotein leuc 40.7 2E+02 0.0043 23.4 8.4 20 562-581 12-31 (56)
381 PF05278 PEARLI-4: Arabidopsis 40.7 5.1E+02 0.011 28.1 16.3 6 611-616 223-228 (269)
382 PLN03188 kinesin-12 family pro 40.0 1E+03 0.023 31.5 39.0 12 485-496 1114-1125(1320)
383 PF07798 DUF1640: Protein of u 39.5 4.2E+02 0.009 26.8 18.7 131 307-437 5-157 (177)
384 PF06632 XRCC4: DNA double-str 39.1 6.2E+02 0.013 28.6 14.7 74 670-750 135-208 (342)
385 TIGR02894 DNA_bind_RsfA transc 38.8 4.1E+02 0.0089 26.5 12.1 100 490-597 55-155 (161)
386 smart00502 BBC B-Box C-termina 38.6 3.2E+02 0.0068 25.1 16.3 34 455-488 5-38 (127)
387 PF13874 Nup54: Nucleoporin co 38.5 2.2E+02 0.0048 27.6 9.3 87 710-797 33-119 (141)
388 TIGR03319 YmdA_YtgF conserved 38.2 7.7E+02 0.017 29.5 26.9 8 769-776 184-191 (514)
389 KOG4657 Uncharacterized conser 38.1 5E+02 0.011 27.3 19.8 83 503-585 22-104 (246)
390 PF12004 DUF3498: Domain of un 37.8 11 0.00023 44.3 0.0 61 361-421 372-432 (495)
391 TIGR00293 prefoldin, archaeal 37.1 1.8E+02 0.0038 27.5 8.2 38 448-485 84-121 (126)
392 PF06428 Sec2p: GDP/GTP exchan 36.6 56 0.0012 29.9 4.4 29 590-618 3-31 (100)
393 PF04108 APG17: Autophagy prot 36.4 7.4E+02 0.016 28.7 49.9 19 769-787 365-383 (412)
394 PF05103 DivIVA: DivIVA protei 36.2 22 0.00048 33.8 1.9 51 385-435 27-77 (131)
395 KOG4074 Leucine zipper nuclear 35.8 6.2E+02 0.013 27.7 17.8 81 362-442 141-222 (383)
396 PF05377 FlaC_arch: Flagella a 35.7 1.9E+02 0.0042 23.4 6.6 41 401-441 4-44 (55)
397 PF05600 DUF773: Protein of un 35.6 5.3E+02 0.012 30.8 13.5 101 275-394 66-167 (507)
398 PF13863 DUF4200: Domain of un 35.4 3.8E+02 0.0082 25.1 16.7 108 373-484 1-108 (126)
399 PRK10803 tol-pal system protei 35.4 2.4E+02 0.0052 30.6 9.9 40 574-613 61-100 (263)
400 KOG1655 Protein involved in va 35.0 5.2E+02 0.011 26.6 15.6 64 557-620 23-88 (218)
401 PF06810 Phage_GP20: Phage min 34.9 3.4E+02 0.0073 26.9 10.0 16 557-572 31-46 (155)
402 KOG1103 Predicted coiled-coil 34.9 6.8E+02 0.015 27.9 23.2 48 569-616 247-294 (561)
403 PF06810 Phage_GP20: Phage min 34.7 4.3E+02 0.0093 26.2 10.7 24 419-442 52-75 (155)
404 KOG4005 Transcription factor X 34.2 3.6E+02 0.0078 28.4 10.1 54 543-596 87-140 (292)
405 PF04912 Dynamitin: Dynamitin 34.0 7.7E+02 0.017 28.3 26.7 229 415-650 91-388 (388)
406 PF14988 DUF4515: Domain of un 33.9 5.6E+02 0.012 26.7 28.1 26 554-579 171-196 (206)
407 PF07851 TMPIT: TMPIT-like pro 33.8 4.5E+02 0.0097 29.5 11.6 27 754-780 65-91 (330)
408 cd07647 F-BAR_PSTPIP The F-BAR 33.7 6E+02 0.013 26.9 26.9 49 423-471 158-206 (239)
409 PF00435 Spectrin: Spectrin re 33.6 3.2E+02 0.0069 23.7 11.2 19 530-548 6-24 (105)
410 PF12004 DUF3498: Domain of un 33.6 14 0.0003 43.4 0.0 32 551-582 374-405 (495)
411 PF06156 DUF972: Protein of un 33.3 2.9E+02 0.0062 25.6 8.5 42 576-617 10-51 (107)
412 cd07649 F-BAR_GAS7 The F-BAR ( 33.0 6.2E+02 0.013 26.9 24.8 9 274-282 18-26 (233)
413 PF02183 HALZ: Homeobox associ 33.0 2E+02 0.0043 22.3 6.2 38 552-589 4-41 (45)
414 PF08198 Thymopoietin: Thymopo 33.0 8.2 0.00018 29.8 -1.3 42 865-909 6-47 (49)
415 PF11180 DUF2968: Protein of u 32.8 5.6E+02 0.012 26.3 16.0 15 672-686 168-182 (192)
416 PLN03229 acetyl-coenzyme A car 32.1 1.1E+03 0.024 29.4 25.8 15 768-782 716-730 (762)
417 KOG4460 Nuclear pore complex, 32.0 9.4E+02 0.02 28.7 22.5 10 49-58 64-73 (741)
418 PF05700 BCAS2: Breast carcino 32.0 6.2E+02 0.013 26.6 17.6 110 528-637 100-217 (221)
419 PF04899 MbeD_MobD: MbeD/MobD 31.2 3.3E+02 0.0073 23.2 9.7 62 369-430 7-68 (70)
420 PRK13729 conjugal transfer pil 31.1 2E+02 0.0043 33.7 8.6 56 559-614 68-123 (475)
421 TIGR02894 DNA_bind_RsfA transc 30.9 5.5E+02 0.012 25.6 12.6 97 555-651 52-153 (161)
422 PF12072 DUF3552: Domain of un 30.6 6.2E+02 0.013 26.1 25.6 177 319-512 13-189 (201)
423 PRK13729 conjugal transfer pil 30.1 2E+02 0.0043 33.7 8.4 58 538-595 68-125 (475)
424 PF05529 Bap31: B-cell recepto 29.9 5E+02 0.011 26.4 10.8 74 565-638 116-190 (192)
425 PRK10636 putative ABC transpor 29.9 2.6E+02 0.0057 34.4 10.2 83 556-638 552-634 (638)
426 PF12761 End3: Actin cytoskele 29.9 5E+02 0.011 26.8 10.3 94 596-699 97-194 (195)
427 PTZ00464 SNF-7-like protein; P 29.6 6.7E+02 0.015 26.2 19.5 139 558-696 16-174 (211)
428 PF02183 HALZ: Homeobox associ 29.5 1.9E+02 0.0041 22.4 5.5 42 453-494 1-42 (45)
429 PF07989 Microtub_assoc: Micro 29.4 3.7E+02 0.0081 23.2 9.4 72 534-605 2-74 (75)
430 PF14282 FlxA: FlxA-like prote 29.3 3.8E+02 0.0083 24.7 8.7 59 566-624 18-80 (106)
431 PF13094 CENP-Q: CENP-Q, a CEN 29.2 4.4E+02 0.0096 26.0 10.0 63 555-617 22-84 (160)
432 PF04880 NUDE_C: NUDE protein, 29.2 87 0.0019 31.4 4.7 52 562-618 2-53 (166)
433 PRK15396 murein lipoprotein; P 28.9 3.4E+02 0.0074 23.7 7.6 48 398-445 26-73 (78)
434 PF11570 E2R135: Coiled-coil r 28.9 5.2E+02 0.011 24.7 14.3 114 583-696 3-136 (136)
435 cd07680 F-BAR_PACSIN1 The F-BA 28.8 7.7E+02 0.017 26.6 26.6 203 273-488 17-239 (258)
436 KOG2077 JNK/SAPK-associated pr 28.6 1.1E+03 0.023 28.3 14.7 123 553-675 301-423 (832)
437 PF07794 DUF1633: Protein of u 28.6 1E+03 0.022 27.9 14.4 140 555-701 578-720 (790)
438 KOG2010 Double stranded RNA bi 28.2 7.6E+02 0.016 27.4 11.7 97 573-669 110-207 (405)
439 KOG4010 Coiled-coil protein TP 28.1 1.5E+02 0.0032 30.0 6.0 39 350-388 43-81 (208)
440 KOG3433 Protein involved in me 28.1 6.5E+02 0.014 25.6 12.6 88 555-642 76-163 (203)
441 KOG3809 Microtubule-binding pr 28.0 9.9E+02 0.021 27.6 14.2 119 432-558 447-579 (583)
442 PF15035 Rootletin: Ciliary ro 27.8 6.7E+02 0.014 25.6 21.6 158 514-681 5-182 (182)
443 PF10220 DUF2146: Uncharacteri 27.5 2.2E+02 0.0048 36.3 8.8 76 190-273 393-468 (895)
444 PRK08476 F0F1 ATP synthase sub 27.1 5.8E+02 0.013 24.7 16.4 108 462-569 32-141 (141)
445 cd07667 BAR_SNX30 The Bin/Amph 27.1 8E+02 0.017 26.3 29.0 182 553-781 51-232 (240)
446 TIGR00618 sbcc exonuclease Sbc 27.1 1.5E+03 0.034 29.6 60.6 466 296-781 137-626 (1042)
447 PRK11546 zraP zinc resistance 26.9 4.5E+02 0.0097 25.7 9.0 71 431-501 49-119 (143)
448 KOG3433 Protein involved in me 26.9 6.9E+02 0.015 25.4 13.4 123 319-445 34-171 (203)
449 PF10779 XhlA: Haemolysin XhlA 26.9 3.5E+02 0.0076 22.9 7.5 50 541-590 1-50 (71)
450 PF12761 End3: Actin cytoskele 26.9 3.2E+02 0.0069 28.2 8.3 90 402-491 101-194 (195)
451 PF10205 KLRAQ: Predicted coil 26.5 5.1E+02 0.011 23.8 10.3 68 347-418 8-75 (102)
452 KOG4787 Uncharacterized conser 26.5 1.2E+03 0.026 28.1 24.8 210 381-600 330-555 (852)
453 PF00170 bZIP_1: bZIP transcri 26.5 3E+02 0.0065 22.6 6.9 40 559-598 25-64 (64)
454 COG2900 SlyX Uncharacterized p 26.4 4.1E+02 0.009 22.7 7.8 55 543-597 5-59 (72)
455 cd07674 F-BAR_FCHO1 The F-BAR 26.3 8.4E+02 0.018 26.2 27.9 217 281-507 7-233 (261)
456 PRK13169 DNA replication intia 26.3 4.4E+02 0.0096 24.6 8.5 52 570-621 4-55 (110)
457 PF12709 Kinetocho_Slk19: Cent 26.2 4.7E+02 0.01 23.3 12.0 84 353-442 3-87 (87)
458 PRK11546 zraP zinc resistance 26.1 6.3E+02 0.014 24.7 9.9 60 518-577 47-113 (143)
459 TIGR03319 YmdA_YtgF conserved 26.1 1.2E+03 0.026 28.0 25.5 165 342-512 23-187 (514)
460 PF10234 Cluap1: Clusterin-ass 26.0 8.8E+02 0.019 26.4 20.4 186 292-493 74-261 (267)
461 PF04859 DUF641: Plant protein 26.0 4E+02 0.0088 25.7 8.4 78 303-388 54-131 (131)
462 PF15233 SYCE1: Synaptonemal c 25.7 6E+02 0.013 24.3 17.4 123 568-691 7-131 (134)
463 PF07794 DUF1633: Protein of u 25.5 1.1E+03 0.025 27.5 14.5 121 349-470 602-725 (790)
464 KOG0992 Uncharacterized conser 25.5 1.2E+03 0.025 27.6 47.0 387 455-853 58-464 (613)
465 PF09744 Jnk-SapK_ap_N: JNK_SA 25.2 6.9E+02 0.015 24.9 19.5 153 300-459 6-158 (158)
466 PF04912 Dynamitin: Dynamitin 25.2 1.1E+03 0.023 27.1 27.4 228 530-763 92-388 (388)
467 PF01442 Apolipoprotein: Apoli 25.2 6.7E+02 0.015 24.8 27.2 198 387-599 2-202 (202)
468 PF10046 BLOC1_2: Biogenesis o 25.1 5.2E+02 0.011 23.4 13.9 92 530-621 5-99 (99)
469 cd07679 F-BAR_PACSIN2 The F-BA 25.1 9E+02 0.019 26.2 26.2 203 273-488 17-239 (258)
470 PF09403 FadA: Adhesion protei 25.0 6.2E+02 0.013 24.2 14.0 100 421-521 23-124 (126)
471 PF13863 DUF4200: Domain of un 24.7 5.8E+02 0.013 23.8 17.4 106 503-608 3-108 (126)
472 KOG2196 Nuclear porin [Nuclear 24.7 8.7E+02 0.019 25.9 20.2 168 605-783 74-245 (254)
473 PF04201 TPD52: Tumour protein 24.6 1.9E+02 0.004 28.9 6.0 39 350-388 28-66 (162)
474 PF07798 DUF1640: Protein of u 24.6 7.3E+02 0.016 25.0 21.1 134 375-512 19-154 (177)
475 PF15188 CCDC-167: Coiled-coil 24.6 5E+02 0.011 23.1 8.0 61 355-415 2-68 (85)
476 PF06156 DUF972: Protein of un 24.5 5.1E+02 0.011 24.0 8.5 54 542-595 4-57 (107)
477 PF06120 Phage_HK97_TLTM: Tail 24.4 1E+03 0.022 26.5 22.0 163 544-714 39-201 (301)
478 KOG4196 bZIP transcription fac 24.4 2.8E+02 0.006 26.5 6.7 42 405-446 75-116 (135)
479 PF03148 Tektin: Tektin family 24.3 1.1E+03 0.024 27.0 45.1 301 463-774 6-362 (384)
480 COG4913 Uncharacterized protei 24.3 1.4E+03 0.031 28.3 31.5 257 385-685 618-887 (1104)
481 PF05700 BCAS2: Breast carcino 24.1 8.5E+02 0.018 25.5 18.8 119 444-573 98-216 (221)
482 PF01442 Apolipoprotein: Apoli 23.0 7.4E+02 0.016 24.4 25.7 185 415-599 2-195 (202)
483 KOG4603 TBP-1 interacting prot 23.0 7.8E+02 0.017 24.7 17.8 147 307-462 9-182 (201)
484 PRK09973 putative outer membra 22.9 4.2E+02 0.0092 23.5 7.2 47 398-444 25-71 (85)
485 KOG0240 Kinesin (SMY1 subfamil 22.7 1.4E+03 0.03 27.6 23.1 196 560-759 338-540 (607)
486 PF03999 MAP65_ASE1: Microtubu 22.6 3.8E+02 0.0082 33.0 9.6 371 384-780 6-414 (619)
487 KOG4603 TBP-1 interacting prot 22.5 8E+02 0.017 24.7 14.9 111 552-662 78-195 (201)
488 PRK13169 DNA replication intia 22.5 4.3E+02 0.0094 24.6 7.6 50 383-432 8-57 (110)
489 PF08172 CASP_C: CASP C termin 22.5 9.8E+02 0.021 25.7 12.8 86 548-633 1-131 (248)
490 KOG0243 Kinesin-like protein [ 22.4 1.8E+03 0.039 28.8 60.4 466 312-801 382-889 (1041)
491 TIGR02284 conserved hypothetic 22.4 2.5E+02 0.0054 27.2 6.5 113 122-238 23-137 (139)
492 PF15372 DUF4600: Domain of un 22.3 7.1E+02 0.015 23.9 12.8 101 542-642 4-105 (129)
493 PF04799 Fzo_mitofusin: fzo-li 22.2 8E+02 0.017 24.8 9.9 66 525-590 102-167 (171)
494 cd07671 F-BAR_PSTPIP1 The F-BA 22.1 9.8E+02 0.021 25.5 24.8 195 306-529 7-207 (242)
495 PF08657 DASH_Spc34: DASH comp 22.0 2.9E+02 0.0063 29.9 7.5 73 536-608 177-259 (259)
496 PF07227 DUF1423: Protein of u 21.9 1.3E+03 0.028 26.9 14.6 134 584-719 311-445 (446)
497 KOG2077 JNK/SAPK-associated pr 21.8 1.4E+03 0.031 27.4 15.1 122 574-696 301-423 (832)
498 COG1730 GIM5 Predicted prefold 21.7 7.7E+02 0.017 24.2 15.1 100 545-644 5-143 (145)
499 KOG3091 Nuclear pore complex, 21.5 1.4E+03 0.03 27.1 18.0 167 541-707 336-505 (508)
500 PF14931 IFT20: Intraflagellar 21.2 7.1E+02 0.015 23.6 16.1 104 585-698 17-120 (120)
No 1
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=100.00 E-value=3.2e-36 Score=329.52 Aligned_cols=247 Identities=31% Similarity=0.469 Sum_probs=209.8
Q ss_pred CCcccChHHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHHHHHHHhhcccC-CCCCh--HHHHHHHHHHHHH
Q 002544 155 GATVLTGPVLIGITESYLDAINNGAVPTISSSWQSVEEAECRRAYDSATETYMSTFDRS-KPPEE--VALGEAHEAAVQK 231 (910)
Q Consensus 155 ~G~~ltg~~l~~l~~~yv~ain~g~vP~i~sa~~~~~~~e~~~a~~~A~~~Y~~~m~~~-~~~~e--~~L~~~H~~~~~~ 231 (910)
||.+||||+|++|+++||+|||+|+||||+|+|.+|++++|.+|+++|+.+|...|+.. .+|++ ++|..+|..|..+
T Consensus 1 gG~~vtG~~L~~L~~~Yv~aIn~G~vP~iesa~~~~~e~e~~~A~~~A~~~Y~~~m~~~~~~P~~~~~eL~~~H~~~~~~ 80 (297)
T PF02841_consen 1 GGITVTGPMLAELVKSYVDAINSGSVPCIESAWQAVAEAENRAAVEKAVEHYEEQMEQRVKLPTETLEELLELHEQCEKE 80 (297)
T ss_dssp TSEB-BHHHHHHHHHHHHHHHHTTS--BHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--SS-SSHHHHHHHHHHHHHH
T ss_pred CCcccccHHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999987 56654 8999999999999
Q ss_pred HHHHhhcccCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhhccCCCcchHHHHHHHH
Q 002544 232 ALAVYNAGAVGVGLARKKYEGLLQKFFRKAFEDHKKNVYMEADIRCSSAIQS----MERKLRAACHSSDASIDNVVKVLD 307 (910)
Q Consensus 232 Al~~F~~~~~g~~~~~~~~~~~L~~~l~~~~~~~~~~n~~~s~~~C~~~l~~----l~~~l~~~~~~~~~~~~~~~~~~~ 307 (910)
|+.+|++++|| +..+.|+..|...|.+.|+.|+..|...|..+|+.+|.. |+.+|..+++.++|+|..|++.++
T Consensus 81 A~~~F~~~s~~--d~~~~~~~~L~~~i~~~~~~~~~~N~~~s~~~C~~~l~~l~~~le~~l~~~~~~~~gg~~~~~~~~~ 158 (297)
T PF02841_consen 81 ALEVFMKRSFG--DEDQKYQKKLMEQIEKKFEEFCKQNEEASEKKCQALLQELFQPLEEKLKQGCYSKPGGYQLFLKELD 158 (297)
T ss_dssp HHHHHHHH------GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSSTTHHHHHHHHHH
T ss_pred HHHHHHHHhcC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHH
Confidence 99999999998 477899999999999999999999999999999999998 788888888888889999999999
Q ss_pred HHHHHhhhcc-CCCChHHHHHHHHhH--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 002544 308 GLISEYETSC-HGPGKWQKLATFLQQ--SSEGPILDLVKRLIDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEY 384 (910)
Q Consensus 308 ~~~~~Y~~~~-~gp~k~~~l~~fl~~--~~~~~il~~~~rl~~~~eke~~~L~~e~~~le~e~e~l~k~lee~e~~~~e~ 384 (910)
.++.+|...| +||....+|..||+. .+...|+..++.|... ++++...+.+...++.+...+.......+..+.+.
T Consensus 159 ~~~~~Y~~~p~Kg~ka~evL~~fl~~~~~~~~~ilq~d~~L~~~-ek~~~~~~~k~e~~e~e~~~l~e~~~~~~~~le~~ 237 (297)
T PF02841_consen 159 ELEKEYEQEPGKGVKAEEVLQEFLQSKESMENSILQADQQLTEK-EKEIEEEQAKAEAAEKEKEKLEEKQKEQEQMLEQQ 237 (297)
T ss_dssp HHHHHHHHSS---TTHHHHHHHHHHHCHHHHHHHHHH-TTS-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999985 788888899999986 6788999999988554 88888888888888888888888877777776666
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 002544 385 LKRYDDAINDKKKLADDYTS 404 (910)
Q Consensus 385 ~k~le~~i~el~~~lee~~~ 404 (910)
.++++.++..|..+++....
T Consensus 238 ~~~~ee~~~~L~ekme~e~~ 257 (297)
T PF02841_consen 238 ERSYEEHIKQLKEKMEEERE 257 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 77777777776655554443
No 2
>PF02263 GBP: Guanylate-binding protein, N-terminal domain; InterPro: IPR015894 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function, and an alpha-helical finger-like C-terminal domain (IPR003191 from INTERPRO). Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3QOF_A 3Q5E_C 3QNU_A 3Q5D_A 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=99.97 E-value=2.7e-32 Score=292.96 Aligned_cols=153 Identities=46% Similarity=0.854 Sum_probs=133.7
Q ss_pred CeeecCCCCCCHHhhhhhhhHHhhhhhHHhhccCCCCCCCcccCCCCceEEEeeccccccccccccCCchHHHHHhhcCC
Q 002544 1 MFIYNQMGGIDESAIDRLSLVTQMTKHIRIRASGGKTTPSELGQFSPIFVWLLRDFYLDLVEDNRKITPRDYLEIALRPV 80 (910)
Q Consensus 1 ~~IYNs~g~Ide~al~~L~l~tel~~~i~~~~~~~~~~~~~~~~~fP~f~WlvRDf~l~l~~~g~~it~~eyLe~~L~~~ 80 (910)
+||||++|+|++++|++|++|++++++|+++... ..+...++.|||+|+||||||++++..+|..+||++||+.+|+..
T Consensus 108 ~~IyN~~~~i~~~~l~~L~~~~~l~~~i~~~~~~-~~~~~~~~~~fp~l~wlvRDf~~~~~~~~~~~t~~eyLe~~L~~~ 186 (260)
T PF02263_consen 108 VLIYNSMGNIDEDDLDQLELFTELAKHIRVKYGD-SADSEDLGKPFPSLVWLVRDFSLELEDDGGKITPQEYLEQALKPE 186 (260)
T ss_dssp EEEEEECSSSSHHHHHCCHHHHHHHHHHHHTHHH-HHHHHCTTTTCEEEEEEEECE-SCTCCTTECHHHHHHHHHHCCSS
T ss_pred ceeeCCCCccchhHHHHHHHHHHHHHHHHHhccc-ccchhhhcccchHHHHHHhhccchhhhccCCCCHHHHHHHHHhcc
Confidence 5899999999999999999999999999986321 112345678999999999999999988888999999999999999
Q ss_pred CCCChhhhhhhHHHHHHHhhCCCCceeeccCCCCChhhhccccCCCcCCCcHHHHHHHHHHHHHHhccCCCccc
Q 002544 81 QGSGRDIAAKNEIRDSIRALFPDRECFTLVRPLSNENELQRLDQISLDRLRPEFRAGLDALTKFVFERTRPKQV 154 (910)
Q Consensus 81 ~g~~~~~~~~n~~R~~i~~~F~~~~cf~l~~P~~~~~~l~~l~~~~~~~L~~eF~~~~~~l~~~i~~~~~pK~i 154 (910)
+|.++.+..+|.+|++|++|||+++||+||+|+.++..++++++++.++|+|+|+++++.||++||+...+|++
T Consensus 187 ~~~~~~~~~~N~iR~~I~~~F~~~~cf~Lp~P~~~~~~l~~l~~l~~~~L~~eF~~~l~~l~~~i~~~~~~k~~ 260 (260)
T PF02263_consen 187 SGQDEEIQERNKIRECIRSCFPSRDCFTLPHPGSDVDKLQNLDGLSLDDLDPEFVEQLDELVKYIFSSAKVKTL 260 (260)
T ss_dssp TSSSCCCCCHHHHHHHHHHHECCEEEEEEE-SSCCCCC-TCGCCCBGGGS-HHHHHHHHHHHHHHHCCT---BE
T ss_pred cchhHHHHHhhHHHHHHHHHCCCCeEEEecCCCchhhhccCcccCChhhCCHHHHHHHHHHHHHHhccCCcccC
Confidence 99888888999999999999999999999999999998999999999999999999999999999999999874
No 3
>KOG2037 consensus Guanylate-binding protein [General function prediction only]
Probab=99.89 E-value=5.8e-22 Score=226.11 Aligned_cols=327 Identities=17% Similarity=0.138 Sum_probs=271.2
Q ss_pred CeeecCCCCCCHHhhhhhhhHHhhhhhHHhhccCCC-----CCCCcccCCCCceEEEeeccccccccccccCCchHHHHH
Q 002544 1 MFIYNQMGGIDESAIDRLSLVTQMTKHIRIRASGGK-----TTPSELGQFSPIFVWLLRDFYLDLVEDNRKITPRDYLEI 75 (910)
Q Consensus 1 ~~IYNs~g~Ide~al~~L~l~tel~~~i~~~~~~~~-----~~~~~~~~~fP~f~WlvRDf~l~l~~~g~~it~~eyLe~ 75 (910)
+++|||+|+|+..+|.+++||++++..+++.+.+.+ ++++++..+||.|.|..|||++++..+|.+|++++|++.
T Consensus 115 ~~~~~s~~~~~~~~~~~~~~~~~~~e~~k~~~~l~~~~~a~~~~~~~~~~~p~fa~tt~~~slqi~~~~q~i~ed~l~~l 194 (552)
T KOG2037|consen 115 TWVYGSEGTINGIAMWQLPFVTELTEGIKVASSLMDTQGAFDDQSTFRSCFPDFALTTMDSSLQIYNDSQNIQEDDLQHL 194 (552)
T ss_pred eeeccCCcccchheecccceeeecCCcceeccccccccccccccccHHHhcchhhceeeeeehhhhcccCcCCHHHHHHH
Confidence 589999999999999999999999999998877532 456678899999999999999999999999999999999
Q ss_pred hhcCCCCCChhhhhhhHHHHHHHhhCCCCceeeccCCCCChhhhccccCCCcCCCcHHHHHHHHHHHHHHhccCCCccc-
Q 002544 76 ALRPVQGSGRDIAAKNEIRDSIRALFPDRECFTLVRPLSNENELQRLDQISLDRLRPEFRAGLDALTKFVFERTRPKQV- 154 (910)
Q Consensus 76 ~L~~~~g~~~~~~~~n~~R~~i~~~F~~~~cf~l~~P~~~~~~l~~l~~~~~~~L~~eF~~~~~~l~~~i~~~~~pK~i- 154 (910)
.|....|. ..|.++...|.++|.+.|+.+...||.+++.....|.+
T Consensus 195 ~l~~~~g~---------------------------------~~l~~~~~kp~q~L~~~~~~~s~~~c~~~~~~~~~~~l~ 241 (552)
T KOG2037|consen 195 SLFTEYGR---------------------------------LALAHLFKKPFQDLKFLVRDQSFPFCSYIGEHGGTKNLD 241 (552)
T ss_pred HHHHHHHH---------------------------------HHHHHhccCcHHHHHHHHHHhhhhhhHHHHHhccccccc
Confidence 88764331 34666777899999999999999999999999999999
Q ss_pred CCcccChHHHHHHHHHHHHHhcCC-CCCCccchHHHHHHHHHHHHHHHHHHHHHhhcccC-CC-CC--hHHHHHHHHHHH
Q 002544 155 GATVLTGPVLIGITESYLDAINNG-AVPTISSSWQSVEEAECRRAYDSATETYMSTFDRS-KP-PE--EVALGEAHEAAV 229 (910)
Q Consensus 155 ~G~~ltg~~l~~l~~~yv~ain~g-~vP~i~sa~~~~~~~e~~~a~~~A~~~Y~~~m~~~-~~-~~--e~~L~~~H~~~~ 229 (910)
+|..++|+.+..|+..|+.+++.+ .+||..++..+++.++|..+++.+.++|...|.+. .+ |. ..++...|..+.
T Consensus 242 ~~l~v~~~~~~el~~~r~~~~~~~~d~~c~~~~~~~l~~~~n~~~~~~~~~~~~~~~~ql~~~~p~~~~q~~l~~~~~~~ 321 (552)
T KOG2037|consen 242 NRLKVNGPQLEELVQLRVHARSCFEDLPCFLNPHPGLAVAENPAFDGKLEDHYNQFMGQLKVELPNLLLQELLDEKEISG 321 (552)
T ss_pred cceeecccchHHHHHHHHHHHhhccCcchhhcCchhhhcccCchhhhhHHHHHHHHHHHHhhhhhHHhhhhhccccccCc
Confidence 888999999999999999999999 89999999999999999999999999999999875 32 33 357889999999
Q ss_pred HHHHHHhhcccCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----h-ccCCCcchHHHHH
Q 002544 230 QKALAVYNAGAVGVGLARKKYEGLLQKFFRKAFEDHKKNVYMEADIRCSSAIQSMERKLRA----A-CHSSDASIDNVVK 304 (910)
Q Consensus 230 ~~Al~~F~~~~~g~~~~~~~~~~~L~~~l~~~~~~~~~~n~~~s~~~C~~~l~~l~~~l~~----~-~~~~~~~~~~~~~ 304 (910)
.++...|....|. +..+-|++.+...+..-.. +.+.|...+...|+.....+...+.. + .+..++.+..+..
T Consensus 322 ~~~t~~~~~e~fk--~y~~i~q~~~g~~lp~pks-~l~~~aea~~l~~va~ak~~~~~~~Eev~~G~~~~~~s~L~~~~d 398 (552)
T KOG2037|consen 322 REVTCREMKEYFK--AYDKIFQKKLGETLPGPKS-MLKANAEASSLAAVAAAKDIYGPLMEEVKGGDIYLSPSGLNLKHD 398 (552)
T ss_pred cchhHHHHHHHHH--HHHHHhhHhhhhhCcCccc-HHHHHHHHhhHHHHHHHHHHHhhhhhhhhcCceeecccHHHHHHH
Confidence 9999999988885 6777788888888877666 78888888899999999875554443 4 4555666888888
Q ss_pred HHHHHHHHhhhcc-CCCChHHHHHHHHhH--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 002544 305 VLDGLISEYETSC-HGPGKWQKLATFLQQ--SSEGPILDLVKRLIDQIGSERSSLMLKYRSIE 364 (910)
Q Consensus 305 ~~~~~~~~Y~~~~-~gp~k~~~l~~fl~~--~~~~~il~~~~rl~~~~eke~~~L~~e~~~le 364 (910)
.+..+...|...+ +|-+...++..|+++ .+...++..+..++.. ++.....+.......
T Consensus 399 ~~k~~a~~~~~e~rK~ig~~e~~~~~lq~LE~v~~~l~~~~~~~~~s-~~~~~~~r~~A~a~~ 460 (552)
T KOG2037|consen 399 KVKELALKYFTEPRKGIGAEEVCQRYLQSLESVEEELLQTDQALTES-KKLFLAARTPAEAAA 460 (552)
T ss_pred HHHHHHHHHHhhhhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-chhHHHhccHHHHHH
Confidence 8888888888765 667777888888886 6677888877777443 444444444444333
No 4
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.87 E-value=1e-16 Score=203.74 Aligned_cols=407 Identities=21% Similarity=0.263 Sum_probs=329.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 348 QIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTV 427 (910)
Q Consensus 348 ~~eke~~~L~~e~~~le~e~e~l~k~lee~e~~~~e~~k~le~~i~el~~~lee~~~~~~~l~~~~~~Le~e~~~L~~ql 427 (910)
.+++++..++.++..+..+++.+.....+.+.. .+.++.++.+++..+++..+.++++..++..+..+...+.+++
T Consensus 1207 ~lekek~~lq~e~~~l~~ev~~~~~~k~~~e~~----~k~~E~~l~elq~k~~~~~~~~~~l~~q~~~l~~E~~~l~~~l 1282 (1930)
T KOG0161|consen 1207 KLEKEKSDLQREIADLAAELEQLSSEKKDLEKK----DKKLEAQLSELQLKLDEQERLRNDLTAKRSRLQNENEELSRQL 1282 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhHh
Confidence 444555555555555555555555555555554 4677788888888888888888888888888888888888777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 428 DSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEK 507 (910)
Q Consensus 428 e~~k~e~~~~kkk~Ee~~~e~~~~k~kl~~eleel~~~~ee~e~~~~~le~~~~~~q~Elee~~~k~e~~~~~~k~~lek 507 (910)
+.....+...- ..+..+..++++++.++++...+...+..++.+++.+++.++.+|+.+. +.+..+.+
T Consensus 1283 ee~e~~~~~~~-----------r~~~~~~~qle~~k~qle~e~r~k~~l~~~l~~l~~e~~~l~e~leee~-e~~~~l~r 1350 (1930)
T KOG0161|consen 1283 EEAEAKLSALS-----------RDKQALESQLEELKRQLEEETREKSALENALRQLEHELDLLREQLEEEQ-EAKNELER 1350 (1930)
T ss_pred HHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 76666555533 3366688899999999999999999999999999999999999999976 67777877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 508 AAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELS 587 (910)
Q Consensus 508 ~~~~~e~~~~e~q~~~~~~~~E~~~~~~ele~ei~~~~~kl~~~e~ei~~l~~~lee~~~ki~~le~e~~~L~~el~dL~ 587 (910)
...... .+...+...+.++......++++....+.. ++..++..++.+..++..+++.+..|+.++.++.
T Consensus 1351 ~lsk~~---~e~~~~~~k~e~~~~~~~eelee~kk~l~~-------~lq~~qe~~e~~~~~~~~Lek~k~~l~~el~d~~ 1420 (1930)
T KOG0161|consen 1351 KLSKAN---AELAQWKKKFEEEVLQRLEELEELKKKLQQ-------RLQELEEQIEAANAKNASLEKAKNRLQQELEDLQ 1420 (1930)
T ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 777544 444444555555555555555555444444 4668889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 002544 588 EKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAARKGKSEFENLA 667 (910)
Q Consensus 588 ~~le~~~~~~~~lEk~~~~Le~e~~el~~~l~e~~~~~eE~e~~l~~~e~e~~~~~~~~e~l~~e~~~~~~e~~e~~r~~ 667 (910)
..++.....+..+++.++.++.-+.+++.........++..+..+.....++..+...++++...++.+..+...++..+
T Consensus 1421 ~d~~~~~~~~~~le~k~k~f~k~l~e~k~~~e~l~~Eld~aq~e~r~~~tel~kl~~~lee~~e~~e~l~renk~l~~ei 1500 (1930)
T KOG0161|consen 1421 LDLERSRAAVAALEKKQKRFEKLLAEWKKKLEKLQAELDAAQRELRQLSTELQKLKNALEELLEQLEELRRENKNLSQEI 1500 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHh
Q 002544 668 MERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEALS------------------KVALLEARVEEREKEIESLLES 729 (910)
Q Consensus 668 ~e~~~~ie~~~~~ie~Le~e~~~Le~Ele~~~~~~~~~~~------------------~~~elE~rl~e~eee~e~l~~r 729 (910)
.++...+.++.+.+..++..+.+++.++.+++..+.++.. ...++++++.+++++++.. +
T Consensus 1501 ~dl~~~~~e~~k~v~elek~~r~le~e~~elQ~aLeElE~~le~eE~~~lr~~~~~~~~r~e~er~l~ek~Ee~E~~--r 1578 (1930)
T KOG0161|consen 1501 EDLEEQKDEGGKRVHELEKEKRRLEQEKEELQAALEELEAALEAEEDKKLRLQLELQQLRSEIERRLQEKDEEIEEL--R 1578 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH--H
Confidence 9999999999999999999999988888777776544322 1368999999999999999 9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHhhhh
Q 002544 730 NNEQRASTVKKLEDLLESERRSRAAANAMAER---------------------LSLEVQSAQAKLDEMQQELTKAR 784 (910)
Q Consensus 730 ~~~qr~~~i~~Le~~le~e~~~~~ea~~r~e~---------------------l~~ql~~~k~~i~~l~~e~~~~~ 784 (910)
+++++ .|++|++.|+++++.++++.+-.++ +.+++..++.++..++...++.+
T Consensus 1579 k~~~~--~i~~~q~~Le~E~r~k~e~~r~KKkle~di~elE~~ld~ank~~~d~~K~lkk~q~~~k~lq~~~e~~~ 1652 (1930)
T KOG0161|consen 1579 KNLQR--QLESLQAELEAETRSKSEALRSKKKLEGDINELEIQLDHANKANEDAQKQLKKLQAQLKELQRELEDAQ 1652 (1930)
T ss_pred HHHHH--HHHHHHHhhhHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 99999 8999999999999999988766442 66668888888888888777544
No 5
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.86 E-value=2e-15 Score=192.25 Aligned_cols=437 Identities=19% Similarity=0.265 Sum_probs=320.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 347 DQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLK---RYDDAINDKKKLADDYTSRINNLQGENISLREKSSSL 423 (910)
Q Consensus 347 ~~~eke~~~L~~e~~~le~e~e~l~k~lee~e~~~~e~~k---~le~~i~el~~~lee~~~~~~~l~~~~~~Le~e~~~L 423 (910)
++.......+-.+...+..+...+..++++.+...+...+ .+..+|.+++.++++..+....+...+..++.++..|
T Consensus 1255 ~~~~~~~~~l~~q~~~l~~E~~~l~~~lee~e~~~~~~~r~~~~~~~qle~~k~qle~e~r~k~~l~~~l~~l~~e~~~l 1334 (1930)
T KOG0161|consen 1255 DEQERLRNDLTAKRSRLQNENEELSRQLEEAEAKLSALSRDKQALESQLEELKRQLEEETREKSALENALRQLEHELDLL 1334 (1930)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555666777777888888888888887666443 7889999999999999999999999999999999988
Q ss_pred HHHHH--------------HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 002544 424 SKTVD--------------SLKNEISDWKRKYDQVL----TKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQE 485 (910)
Q Consensus 424 ~~qle--------------~~k~e~~~~kkk~Ee~~----~e~~~~k~kl~~eleel~~~~ee~e~~~~~le~~~~~~q~ 485 (910)
..+++ .+..++.+|+++|++.. +++++++++++..++++..+++.+..++..+++.+.++++
T Consensus 1335 ~e~leee~e~~~~l~r~lsk~~~e~~~~~~k~e~~~~~~~eelee~kk~l~~~lq~~qe~~e~~~~~~~~Lek~k~~l~~ 1414 (1930)
T KOG0161|consen 1335 REQLEEEQEAKNELERKLSKANAELAQWKKKFEEEVLQRLEELEELKKKLQQRLQELEEQIEAANAKNASLEKAKNRLQQ 1414 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 77776 44568899999998665 5689999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 486 EVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAA 565 (910)
Q Consensus 486 Elee~~~k~e~~~~~~k~~lek~~~~~e~~~~e~q~~~~~~~~E~~~~~~ele~ei~~~~~kl~~~e~ei~~l~~~lee~ 565 (910)
++++.. .++++..+.. ..+++.+..++.+.+++......+..+++..+...+...+++..+...++++
T Consensus 1415 el~d~~-----------~d~~~~~~~~-~~le~k~k~f~k~l~e~k~~~e~l~~Eld~aq~e~r~~~tel~kl~~~lee~ 1482 (1930)
T KOG0161|consen 1415 ELEDLQ-----------LDLERSRAAV-AALEKKQKRFEKLLAEWKKKLEKLQAELDAAQRELRQLSTELQKLKNALEEL 1482 (1930)
T ss_pred HHHHHH-----------HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 999555 4444444433 3678888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------
Q 002544 566 ESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQE--------------- 630 (910)
Q Consensus 566 ~~ki~~le~e~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~e~~el~~~l~e~~~~~eE~e~--------------- 630 (910)
...++.+.++.+.++.++.++..++.+++..++++++..+.++.++.+++..+.+++..+.-.+.
T Consensus 1483 ~e~~e~l~renk~l~~ei~dl~~~~~e~~k~v~elek~~r~le~e~~elQ~aLeElE~~le~eE~~~lr~~~~~~~~r~e 1562 (1930)
T KOG0161|consen 1483 LEQLEELRRENKNLSQEIEDLEEQKDEGGKRVHELEKEKRRLEQEKEELQAALEELEAALEAEEDKKLRLQLELQQLRSE 1562 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998777653221111
Q ss_pred ---HHHHHHHHHHH----HHHHHHHHHHHHHHHH--------------HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002544 631 ---RCKVAEKEAKK----ATELADRERAEAAAAR--------------KGKSEFENLAMERMAVIERVQRQIESLERQKT 689 (910)
Q Consensus 631 ---~l~~~e~e~~~----~~~~~e~l~~e~~~~~--------------~e~~e~~r~~~e~~~~ie~~~~~ie~Le~e~~ 689 (910)
.+.....+... ....++.++..++.-. .++.+++..+.........+.+++..+...+.
T Consensus 1563 ~er~l~ek~Ee~E~~rk~~~~~i~~~q~~Le~E~r~k~e~~r~KKkle~di~elE~~ld~ank~~~d~~K~lkk~q~~~k 1642 (1930)
T KOG0161|consen 1563 IERRLQEKDEEIEELRKNLQRQLESLQAELEAETRSKSEALRSKKKLEGDINELEIQLDHANKANEDAQKQLKKLQAQLK 1642 (1930)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHhhHHHHHHHHhhHHHHH
Confidence 11111111111 1111111122211111 12222333333444444444555555555556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 690 DLTNEVNRIRESELEALSKVALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERRSRAAANAMAERLSLEVQSA 769 (910)
Q Consensus 690 ~Le~Ele~~~~~~~~~~~~~~elE~rl~e~eee~e~l~~r~~~qr~~~i~~Le~~le~e~~~~~ea~~r~e~l~~ql~~~ 769 (910)
.++.+++.......+....+...++++.....+++.+ +..+......-..++..++...+..+........+...-.++
T Consensus 1643 ~lq~~~e~~~~~~~e~~~q~~~aerr~~~l~~E~eeL-~~~l~~~~Rarr~aE~e~~E~~e~i~~~~~~~s~l~~~Krkl 1721 (1930)
T KOG0161|consen 1643 ELQRELEDAQRAREELLEQLAEAERRLAALQAELEEL-REKLEALERARRQAELELEELAERVNELNAQNSSLTAEKRKL 1721 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccchhhHHHHH
Confidence 6666677777677777777778888888888888888 666666655666777777766666666555444555555566
Q ss_pred HHHHHHHHHHHhhhhchhhhhcchhhh
Q 002544 770 QAKLDEMQQELTKARLNETALGSKLRA 796 (910)
Q Consensus 770 k~~i~~l~~e~~~~~~~~~~~~~~~~~ 796 (910)
...|-.++.++++...+=.+.+-+.|.
T Consensus 1722 E~~i~~l~~elee~~~~~~~~~Er~kk 1748 (1930)
T KOG0161|consen 1722 EAEIAQLQSELEEEQSELRAAEERAKK 1748 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 666666666666544444445555544
No 6
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=99.76 E-value=8.1e-20 Score=225.00 Aligned_cols=419 Identities=21% Similarity=0.291 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 340 DLVKRLIDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREK 419 (910)
Q Consensus 340 ~~~~rl~~~~eke~~~L~~e~~~le~e~e~l~k~lee~e~~~~e~~k~le~~i~el~~~lee~~~~~~~l~~~~~~Le~e 419 (910)
+-.++...++++++..+..++..+...++.+.+....+++. .+.++.++.+++.++++..+.++.+...+..|..+
T Consensus 141 e~lqk~k~~lEK~k~~l~~e~~dL~~~l~~~~k~k~~~Ek~----~K~lE~qL~El~~klee~er~~~el~~~k~kL~~E 216 (859)
T PF01576_consen 141 EQLQKQKAKLEKEKSQLEAELDDLQAQLDSLQKAKQEAEKK----RKQLEAQLNELQAKLEESERQRNELTEQKAKLQSE 216 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhH----HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556667888899999999999999999999999888887 78999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 420 SSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVR 499 (910)
Q Consensus 420 ~~~L~~qle~~k~e~~~~kkk~Ee~~~e~~~~k~kl~~eleel~~~~ee~e~~~~~le~~~~~~q~Elee~~~k~e~~~~ 499 (910)
+++|..+++.....+..+.+ .+..+..+|++++..+++.......+...+..++.+++.++..++...
T Consensus 217 ~~eL~~qLee~e~~~~~l~r-----------~k~~L~~qLeelk~~leeEtr~k~~L~~~l~~le~e~~~L~eqleeE~- 284 (859)
T PF01576_consen 217 NSELTRQLEEAESQLSQLQR-----------EKSSLESQLEELKRQLEEETRAKQALEKQLRQLEHELEQLREQLEEEE- 284 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHhhHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHhhhh-
Confidence 99999999988777666433 355677888888888888888888888888888888888888888754
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 500 EAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQ 579 (910)
Q Consensus 500 ~~k~~lek~~~~~e~~~~e~q~~~~~~~~E~~~~~~ele~ei~~~~~kl~~~e~ei~~l~~~lee~~~ki~~le~e~~~L 579 (910)
..+..+.+....+...+..|..+++. +.......+++ .+.+ +..++.++...++.+..++..+++.+..|
T Consensus 285 e~k~~l~~qlsk~~~El~~~k~K~e~---e~~~~~EelEe----aKKk---L~~~L~el~e~le~~~~~~~~LeK~k~rL 354 (859)
T PF01576_consen 285 EAKSELERQLSKLNAELEQWKKKYEE---EAEQRTEELEE----AKKK---LERKLQELQEQLEEANAKVSSLEKTKKRL 354 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHH---HhhhhHHHHHH----HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57777777777655555555444444 22222222222 2222 33467799999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002544 580 KLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAARKG 659 (910)
Q Consensus 580 ~~el~dL~~~le~~~~~~~~lEk~~~~Le~e~~el~~~l~e~~~~~eE~e~~l~~~e~e~~~~~~~~e~l~~e~~~~~~e 659 (910)
+.++.|+...++.....+..++++.+.|+..+.+|+..+..+....+.+..+......++..+...++.+...++.+..+
T Consensus 355 ~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~~q~e~r~~~te~~~Lk~~lee~~e~~e~lere 434 (859)
T PF01576_consen 355 QGELEDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAKVEELQAERDAAQREARELETELFKLKNELEELQEQLEELERE 434 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998888889999999999999999999999999999999988
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHH
Q 002544 660 KSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSK------------------VALLEARVEEREK 721 (910)
Q Consensus 660 ~~e~~r~~~e~~~~ie~~~~~ie~Le~e~~~Le~Ele~~~~~~~~~~~~------------------~~elE~rl~e~ee 721 (910)
...++..+.++...+....+.+..|++.+.+|+.++..+...+.++... ..++++++.++++
T Consensus 435 ~k~L~~El~dl~~q~~~~~k~v~eLek~kr~LE~e~~El~~~leE~E~~l~~~E~~~lRl~~el~~~r~e~er~l~eKee 514 (859)
T PF01576_consen 435 NKQLQDELEDLTSQLDDAGKSVHELEKAKRRLEQEKEELQEQLEEAEDALEAEEQKKLRLQVELQQLRQEIERELQEKEE 514 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHhhccchhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 8889888888888888888888888888888888887777654432221 2689999999999
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHH
Q 002544 722 EIESLLESNNEQRASTVKKLEDLLESERRSRAAANAMAER---------------------LSLEVQSAQAKLDEMQQEL 780 (910)
Q Consensus 722 e~e~l~~r~~~qr~~~i~~Le~~le~e~~~~~ea~~r~e~---------------------l~~ql~~~k~~i~~l~~e~ 780 (910)
+++.+ |+++++ .|++|+..|+.+++.++.+.+..++ +.+++..++.+|..++..+
T Consensus 515 E~E~~--Rr~~qr--~l~~le~~LE~E~k~r~~~~r~kkKLE~~l~eLe~~ld~~n~~~~e~~k~~kk~q~qlkdlq~~l 590 (859)
T PF01576_consen 515 EFEET--RRNHQR--QLESLEAELEEERKERAEALREKKKLESDLNELEIQLDHANRANEEAQKQLKKLQAQLKDLQREL 590 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHH--HHhhHH--HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhhhh
Confidence 99999 999999 8999999999999999988776555 4444677777888887777
Q ss_pred hh-hhchhh
Q 002544 781 TK-ARLNET 788 (910)
Q Consensus 781 ~~-~~~~~~ 788 (910)
.+ .|.++.
T Consensus 591 ee~~~~~~~ 599 (859)
T PF01576_consen 591 EEAQRAREE 599 (859)
T ss_dssp ---------
T ss_pred HHHHHHHHH
Confidence 74 334444
No 7
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=99.74 E-value=3.1e-18 Score=180.28 Aligned_cols=128 Identities=32% Similarity=0.435 Sum_probs=107.6
Q ss_pred CeeecCCCCCCHHhhhhhhhHHhhhhhHHhhccCCCCCCCcccCCCCceEEEeeccccccccccccCCchHHHHHhhcCC
Q 002544 1 MFIYNQMGGIDESAIDRLSLVTQMTKHIRIRASGGKTTPSELGQFSPIFVWLLRDFYLDLVEDNRKITPRDYLEIALRPV 80 (910)
Q Consensus 1 ~~IYNs~g~Ide~al~~L~l~tel~~~i~~~~~~~~~~~~~~~~~fP~f~WlvRDf~l~l~~~g~~it~~eyLe~~L~~~ 80 (910)
++|||+++.|++.+++.|+++++++.. . .+......+..+||.|+|+||||++.+...+..+|
T Consensus 94 ~~i~n~~~~~~~~~~~~l~~~~~~~~~--~---~~~~~~~~~~~~~p~ll~vvRD~~~~~~~~~~~~~------------ 156 (224)
T cd01851 94 VLIYNSWETILGDDLAALMGLLKTTLE--V---LGLAGLTEFEKPKPLLLFVVRDFSLDTPLENLDIT------------ 156 (224)
T ss_pred EEEEeccCcccHHHHHHHHHHHHHHHH--h---hhhhhhhhcccCCCceEEEEecCcCCccccccccc------------
Confidence 489999999999999999999998721 1 11112234668999999999999998877554444
Q ss_pred CCCChhhhhhhHHHHHHHhhC--CCCceeeccCCCCChhhhccccCCCcCCCcHHHHHHHHHHHHHHhc
Q 002544 81 QGSGRDIAAKNEIRDSIRALF--PDRECFTLVRPLSNENELQRLDQISLDRLRPEFRAGLDALTKFVFE 147 (910)
Q Consensus 81 ~g~~~~~~~~n~~R~~i~~~F--~~~~cf~l~~P~~~~~~l~~l~~~~~~~L~~eF~~~~~~l~~~i~~ 147 (910)
++........|.+|.+|+.|| |.++||+||+|+.+...+++ +++...|+|+|+++++.|++++++
T Consensus 157 ~~~~~~~~~~~~ir~~l~~~f~~~~~~cf~l~~p~~~~~~~~~--~~~~~~l~~eF~~~l~~L~~~~~~ 223 (224)
T cd01851 157 EGRETLIEDLNKIWSSIRKPFENPPIDCFFLPRPGLLHHLLQN--EGRLKLLPPEFLEALKELRDRFFS 223 (224)
T ss_pred cccchhHHHHHHHHHHHHhhccCCcchheeccccccchhhccc--ccchhhCCHHHHHHHHHHHHHhcC
Confidence 445567778999999999999 99999999999999988887 889999999999999999999875
No 8
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=99.71 E-value=1.1e-18 Score=215.19 Aligned_cols=348 Identities=19% Similarity=0.291 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 347 DQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLK---RYDDAINDKKKLADDYTSRINNLQGENISLREKSSSL 423 (910)
Q Consensus 347 ~~~eke~~~L~~e~~~le~e~e~l~k~lee~e~~~~e~~k---~le~~i~el~~~lee~~~~~~~l~~~~~~Le~e~~~L 423 (910)
......+..+......++.++..+..++++.+.....+.+ .++.++.+++..+++..+.+..|...+..++.++..|
T Consensus 197 ee~er~~~el~~~k~kL~~E~~eL~~qLee~e~~~~~l~r~k~~L~~qLeelk~~leeEtr~k~~L~~~l~~le~e~~~L 276 (859)
T PF01576_consen 197 EESERQRNELTEQKAKLQSENSELTRQLEEAESQLSQLQREKSSLESQLEELKRQLEEETRAKQALEKQLRQLEHELEQL 276 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHhhhhhhhHHHHHHHHHHHHHH
Confidence 4445566666777777777777777777777776555443 7899999999999999999999999999999999988
Q ss_pred HHHHH--------------HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 002544 424 SKTVD--------------SLKNEISDWKRKYDQVL----TKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQE 485 (910)
Q Consensus 424 ~~qle--------------~~k~e~~~~kkk~Ee~~----~e~~~~k~kl~~eleel~~~~ee~e~~~~~le~~~~~~q~ 485 (910)
..+++ .+..++..|+++|+... +.++++++++...+.++...++++...+..+++.+.++++
T Consensus 277 ~eqleeE~e~k~~l~~qlsk~~~El~~~k~K~e~e~~~~~EelEeaKKkL~~~L~el~e~le~~~~~~~~LeK~k~rL~~ 356 (859)
T PF01576_consen 277 REQLEEEEEAKSELERQLSKLNAELEQWKKKYEEEAEQRTEELEEAKKKLERKLQELQEQLEEANAKVSSLEKTKKRLQG 356 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77766 45668999999998664 4688999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 486 EVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAA 565 (910)
Q Consensus 486 Elee~~~k~e~~~~~~k~~lek~~~~~e~~~~e~q~~~~~~~~E~~~~~~ele~ei~~~~~kl~~~e~ei~~l~~~lee~ 565 (910)
+++|+...++.. .... ..+++.+..|+...++|......+..++..+......+..++..+...++++
T Consensus 357 EleDl~~eLe~~-----------~~~~-~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~~q~e~r~~~te~~~Lk~~lee~ 424 (859)
T PF01576_consen 357 ELEDLTSELEKA-----------QAAA-AELEKKQRKFDKQLAEWKAKVEELQAERDAAQREARELETELFKLKNELEEL 424 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHH-----------HHHH-HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHH
Confidence 999777655553 3322 3667788888888888988888889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 566 ESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATEL 645 (910)
Q Consensus 566 ~~ki~~le~e~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~e~~el~~~l~e~~~~~eE~e~~l~~~e~e~~~~~~~ 645 (910)
...+..+++.++.|+.+|.++..++..++..++.|++..+.|+.++.+++.. +++++..+...+..+.++.-.
T Consensus 425 ~e~~e~lere~k~L~~El~dl~~q~~~~~k~v~eLek~kr~LE~e~~El~~~-------leE~E~~l~~~E~~~lRl~~e 497 (859)
T PF01576_consen 425 QEQLEELERENKQLQDELEDLTSQLDDAGKSVHELEKAKRRLEQEKEELQEQ-------LEEAEDALEAEEQKKLRLQVE 497 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhhccchhhhhhhccchHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999887 666666666666555554333
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 646 ADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSKVALLEARVEEREKEIES 725 (910)
Q Consensus 646 ~e~l~~e~~~~~~e~~e~~r~~~e~~~~ie~~~~~ie~Le~e~~~Le~Ele~~~~~~~~~~~~~~elE~rl~e~eee~e~ 725 (910)
+. ..+.++++.+.+....++..++ ++.+.+..|+.+++.-+.....+......|+..+.+++..++.
T Consensus 498 l~----------~~r~e~er~l~eKeeE~E~~Rr---~~qr~l~~le~~LE~E~k~r~~~~r~kkKLE~~l~eLe~~ld~ 564 (859)
T PF01576_consen 498 LQ----------QLRQEIERELQEKEEEFEETRR---NHQRQLESLEAELEEERKERAEALREKKKLESDLNELEIQLDH 564 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HH----------HHHHHHHHHHHhhhhHHHHHHH---hhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32 2344455666666666666554 6677777777777766666666555566777777777666665
Q ss_pred H
Q 002544 726 L 726 (910)
Q Consensus 726 l 726 (910)
.
T Consensus 565 ~ 565 (859)
T PF01576_consen 565 A 565 (859)
T ss_dssp -
T ss_pred H
Confidence 5
No 9
>KOG2037 consensus Guanylate-binding protein [General function prediction only]
Probab=99.62 E-value=2.4e-14 Score=164.18 Aligned_cols=257 Identities=18% Similarity=0.186 Sum_probs=218.3
Q ss_pred eeecCCCCCCHHhhhhhhhHHhhhhhHHhhccCCCCCCCcccCCCCceEEEeecccccccc-ccccCCchHHHHHhhcCC
Q 002544 2 FIYNQMGGIDESAIDRLSLVTQMTKHIRIRASGGKTTPSELGQFSPIFVWLLRDFYLDLVE-DNRKITPRDYLEIALRPV 80 (910)
Q Consensus 2 ~IYNs~g~Ide~al~~L~l~tel~~~i~~~~~~~~~~~~~~~~~fP~f~WlvRDf~l~l~~-~g~~it~~eyLe~~L~~~ 80 (910)
-|||....|+++++++|++++.+++...-. .+..+|.++.+++|||+.+.+. .|. -+.+..|.+.++..
T Consensus 178 qi~~~~q~i~ed~l~~l~l~~~~g~~~l~~---------~~~kp~q~L~~~~~~~s~~~c~~~~~-~~~~~~l~~~l~v~ 247 (552)
T KOG2037|consen 178 QIYNDSQNIQEDDLQHLSLFTEYGRLALAH---------LFKKPFQDLKFLVRDQSFPFCSYIGE-HGGTKNLDNRLKVN 247 (552)
T ss_pred hhhcccCcCCHHHHHHHHHHHHHHHHHHHH---------hccCcHHHHHHHHHHhhhhhhHHHHH-hccccccccceeec
Confidence 589999999999999999999999854322 2457899999999999999875 354 35567777777653
Q ss_pred CCCChhhhhhhHHHHHHHhhCCCCceeeccCCCCChhhhccccCCCcCCCcHHHHHHHHHHHHHHhc--cCCCcccCCcc
Q 002544 81 QGSGRDIAAKNEIRDSIRALFPDRECFTLVRPLSNENELQRLDQISLDRLRPEFRAGLDALTKFVFE--RTRPKQVGATV 158 (910)
Q Consensus 81 ~g~~~~~~~~n~~R~~i~~~F~~~~cf~l~~P~~~~~~l~~l~~~~~~~L~~eF~~~~~~l~~~i~~--~~~pK~i~G~~ 158 (910)
++...++-.+|+++++||-+.-||.+|+|+......+..++ ...++.+.|..++...++.... ...+|.++|..
T Consensus 248 ---~~~~~el~~~r~~~~~~~~d~~c~~~~~~~l~~~~n~~~~~-~~~~~~~~~~~ql~~~~p~~~~q~~l~~~~~~~~~ 323 (552)
T KOG2037|consen 248 ---GPQLEELVQLRVHARSCFEDLPCFLNPHPGLAVAENPAFDG-KLEDHYNQFMGQLKVELPNLLLQELLDEKEISGRE 323 (552)
T ss_pred ---ccchHHHHHHHHHHHhhccCcchhhcCchhhhcccCchhhh-hHHHHHHHHHHHHhhhhhHHhhhhhccccccCccc
Confidence 45667788899999999999999999999998877766654 7889999999999866666554 47899999999
Q ss_pred cChHHHHHHHHHHHHHhc---CCCCCCccchHHHHHHHHHHHHHHHHHHHHHhhcccCC----CCChHHHHHHHHHHHHH
Q 002544 159 LTGPVLIGITESYLDAIN---NGAVPTISSSWQSVEEAECRRAYDSATETYMSTFDRSK----PPEEVALGEAHEAAVQK 231 (910)
Q Consensus 159 ltg~~l~~l~~~yv~ain---~g~vP~i~sa~~~~~~~e~~~a~~~A~~~Y~~~m~~~~----~~~e~~L~~~H~~~~~~ 231 (910)
+|+..+..+++.|...+. .-.+|-+.+...+++++.+..++..|...|...|+.++ .+.+..|...|......
T Consensus 324 ~t~~~~~e~fk~y~~i~q~~~g~~lp~pks~l~~~aea~~l~~va~ak~~~~~~~Eev~~G~~~~~~s~L~~~~d~~k~~ 403 (552)
T KOG2037|consen 324 VTCREMKEYFKAYDKIFQKKLGETLPGPKSMLKANAEASSLAAVAAAKDIYGPLMEEVKGGDIYLSPSGLNLKHDKVKEL 403 (552)
T ss_pred hhHHHHHHHHHHHHHHhhHhhhhhCcCcccHHHHHHHHhhHHHHHHHHHHHhhhhhhhhcCceeecccHHHHHHHHHHHH
Confidence 999999999999999999 55799999999999999999999999999999998753 35678999999999999
Q ss_pred HHHHhhc-cc-CCChhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 232 ALAVYNA-GA-VGVGLARKKYEGLLQKFFRKAFEDHKKNVYME 272 (910)
Q Consensus 232 Al~~F~~-~~-~g~~~~~~~~~~~L~~~l~~~~~~~~~~n~~~ 272 (910)
|+..|.. +. +|..+..+.|...|...+...+..++..+...
T Consensus 404 a~~~~~e~rK~ig~~e~~~~~lq~LE~v~~~l~~~~~~~~~s~ 446 (552)
T KOG2037|consen 404 ALKYFTEPRKGIGAEEVCQRYLQSLESVEEELLQTDQALTESK 446 (552)
T ss_pred HHHHHhhhhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999988 34 88888999999999998888888777766443
No 10
>PRK02224 chromosome segregation protein; Provisional
Probab=99.54 E-value=1.1e-08 Score=129.48 Aligned_cols=78 Identities=23% Similarity=0.345 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhch
Q 002544 707 SKVALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKLDEMQQELTKARLN 786 (910)
Q Consensus 707 ~~~~elE~rl~e~eee~e~l~~r~~~qr~~~i~~Le~~le~e~~~~~ea~~r~e~l~~ql~~~k~~i~~l~~e~~~~~~~ 786 (910)
.++.++..++.+...++..+ .....+...|..+...+......+.....+.+.+..++..++..|+.++..+...+..
T Consensus 572 ~~~~~~~~~~~~l~~~~~~l--e~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~r~~i~~l~~~~~~~~~e 649 (880)
T PRK02224 572 EEVAELNSKLAELKERIESL--ERIRTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKRELEAEFDEARIE 649 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHH
Confidence 34445555555555555555 2344444555555555555555555555555666667777777777776666555444
No 11
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=99.43 E-value=2.2e-06 Score=111.04 Aligned_cols=236 Identities=22% Similarity=0.279 Sum_probs=133.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 546 TKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERF 625 (910)
Q Consensus 546 ~kl~~~e~ei~~l~~~lee~~~ki~~le~e~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~e~~el~~~l~e~~~~~ 625 (910)
.++...+..+..+...+..+...+..+...+..+...+.++...+...+..+..++..+..+......+...+.....++
T Consensus 758 ~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~~l~~~~ 837 (1163)
T COG1196 758 ERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEI 837 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444333344444444444344444444444455555544555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 002544 626 EEVQERCKVAEKEAKKATELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEA 705 (910)
Q Consensus 626 eE~e~~l~~~e~e~~~~~~~~e~l~~e~~~~~~e~~e~~r~~~e~~~~ie~~~~~ie~Le~e~~~Le~Ele~~~~~~~~~ 705 (910)
.+++..+..+...+.........+...+..++.++..+...+.........+..++..+...+..+..+++........+
T Consensus 838 ~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l 917 (1163)
T COG1196 838 EELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEEL 917 (1163)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555555555555555555555555555555555556665666655655555555555444
Q ss_pred HHHHHHHHHHHHHHHHHHHH--------HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 706 LSKVALLEARVEEREKEIES--------LLESNNEQRASTVKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKLDEMQ 777 (910)
Q Consensus 706 ~~~~~elE~rl~e~eee~e~--------l~~r~~~qr~~~i~~Le~~le~e~~~~~ea~~r~e~l~~ql~~~k~~i~~l~ 777 (910)
..+...++..+......+.. -+++........|..|+.++..+.+++.++..||+++..++..+....+.++
T Consensus 918 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~le~~i~~lg~VN~~Aiee~e~~~~r~~~l~~~~~dl~~a~~~l~ 997 (1163)
T COG1196 918 EAKLERLEVELPELEEELEEEYEDTLETELEREIERLEEEIEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKEKLL 997 (1163)
T ss_pred HHHHHHHHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444333 1145666667788999999999999999999999999999666666665555
Q ss_pred HHHh
Q 002544 778 QELT 781 (910)
Q Consensus 778 ~e~~ 781 (910)
....
T Consensus 998 ~~i~ 1001 (1163)
T COG1196 998 EVIE 1001 (1163)
T ss_pred HHHH
Confidence 5544
No 12
>PRK03918 chromosome segregation protein; Provisional
Probab=99.42 E-value=1.3e-06 Score=110.94 Aligned_cols=6 Identities=0% Similarity=0.218 Sum_probs=2.1
Q ss_pred HHHHHH
Q 002544 365 DNMKLL 370 (910)
Q Consensus 365 ~e~e~l 370 (910)
.++..+
T Consensus 207 ~ei~~l 212 (880)
T PRK03918 207 REINEI 212 (880)
T ss_pred HHHHHH
Confidence 333333
No 13
>PRK03918 chromosome segregation protein; Provisional
Probab=99.42 E-value=1.9e-06 Score=109.43 Aligned_cols=31 Identities=13% Similarity=0.292 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 002544 349 IGSERSSLMLKYRSIEDNMKLLKKQLEDSER 379 (910)
Q Consensus 349 ~eke~~~L~~e~~~le~e~e~l~k~lee~e~ 379 (910)
+.++++.+..++..++..+..+...+..++.
T Consensus 205 l~~ei~~l~~e~~~l~~~~~~~~~~l~~l~~ 235 (880)
T PRK03918 205 VLREINEISSELPELREELEKLEKEVKELEE 235 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444555554444444444444433
No 14
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.42 E-value=8.5e-07 Score=116.14 Aligned_cols=9 Identities=11% Similarity=0.109 Sum_probs=4.4
Q ss_pred CCCCceEEE
Q 002544 44 QFSPIFVWL 52 (910)
Q Consensus 44 ~~fP~f~Wl 52 (910)
.|+|.|.++
T Consensus 20 ~f~~~~~~i 28 (1179)
T TIGR02168 20 NFDKGITGI 28 (1179)
T ss_pred EecCCcEEE
Confidence 345555544
No 15
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.40 E-value=1.1e-06 Score=115.05 Aligned_cols=6 Identities=0% Similarity=-0.141 Sum_probs=2.6
Q ss_pred CCcccC
Q 002544 155 GATVLT 160 (910)
Q Consensus 155 ~G~~lt 160 (910)
+|.+++
T Consensus 115 ~~~~~~ 120 (1179)
T TIGR02168 115 NGQPCR 120 (1179)
T ss_pred CCCccc
Confidence 444443
No 16
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.39 E-value=6.3e-06 Score=108.18 Aligned_cols=46 Identities=7% Similarity=0.089 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002544 734 RASTVKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKLDEMQQELT 781 (910)
Q Consensus 734 r~~~i~~Le~~le~e~~~~~ea~~r~e~l~~ql~~~k~~i~~l~~e~~ 781 (910)
+..+|..|+..|+. ..+..+..+|.....++..++--++++..+..
T Consensus 1080 le~qi~~l~~eL~e--~~yk~a~~ryrka~i~~~~~~~~~~d~~~~~~ 1125 (1311)
T TIGR00606 1080 YEKEIKHFKKELRE--PQFRDAEEKYREMMIVMRTTELVNKDLDIYYK 1125 (1311)
T ss_pred HHHHHHHHHHHHcc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666644 56677888888877777776666666655544
No 17
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=99.33 E-value=3.7e-06 Score=101.71 Aligned_cols=155 Identities=19% Similarity=0.252 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 341 LVKRLIDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEY---LKRYDDAINDKKKLADDYTSRINNLQGENISLR 417 (910)
Q Consensus 341 ~~~rl~~~~eke~~~L~~e~~~le~e~e~l~k~lee~e~~~~e~---~k~le~~i~el~~~lee~~~~~~~l~~~~~~Le 417 (910)
....++...+..+..+..-++.++.++..|......+....... ...+..+...++.+++.....+..-..++-.+.
T Consensus 228 alq~~ie~Kd~ki~~lEr~l~~le~Ei~~L~~~~~~~~~~r~~~~k~le~~~s~~~~mK~k~d~~~~eL~rk~~E~~~~q 307 (775)
T PF10174_consen 228 ALQTVIEEKDTKIASLERMLRDLEDEIYRLRSRGELSEADRDRLDKQLEVYKSHSLAMKSKMDRLKLELSRKKSELEALQ 307 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666667777777777777777777766554333321111 223333344444556666555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH-------HHHHHHHHHHHHHHHHHHH
Q 002544 418 EKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEA-------RLAAAREQALSAQEEVEEW 490 (910)
Q Consensus 418 ~e~~~L~~qle~~k~e~~~~kkk~Ee~~~e~~~~k~kl~~eleel~~~~ee~e~-------~~~~le~~~~~~q~Elee~ 490 (910)
+++..+..+....+..+.-.+-. +...+.-...|+++++.|..++++... .+..+...+..++.++.++
T Consensus 308 t~l~~~~~~~~d~r~hi~~lkes----l~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l 383 (775)
T PF10174_consen 308 TRLETLEEQDSDMRQHIEVLKES----LRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDL 383 (775)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHH----HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555444444433322 222333355566666666666666655 4555667777777888888
Q ss_pred HHHHHHHHH
Q 002544 491 KRKYGVAVR 499 (910)
Q Consensus 491 ~~k~e~~~~ 499 (910)
+..|+....
T Consensus 384 ~d~~d~~e~ 392 (775)
T PF10174_consen 384 RDMLDKKER 392 (775)
T ss_pred HHHHHHHHH
Confidence 888888643
No 18
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=99.29 E-value=1.1e-05 Score=97.72 Aligned_cols=62 Identities=16% Similarity=0.289 Sum_probs=29.9
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002544 721 KEIESLLESNNEQRASTVKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKLDEMQQELTKA 783 (910)
Q Consensus 721 ee~e~l~~r~~~qr~~~i~~Le~~le~e~~~~~ea~~r~e~l~~ql~~~k~~i~~l~~e~~~~ 783 (910)
++++.+ +..+..++.++..|+..|..-.-.+..+......+.....+..+.|+.++-.+++.
T Consensus 465 Eele~~-~~e~~~lk~~~~~LQ~eLsEk~~~l~~~kee~s~l~s~~~K~~s~i~~l~I~lEk~ 526 (775)
T PF10174_consen 465 EELETY-QKELKELKAKLESLQKELSEKELQLEDAKEEASKLASSQEKKDSEIERLEIELEKK 526 (775)
T ss_pred HHHHHH-HHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHhhccchhhhHHHHHHHHHHHh
Confidence 344444 44444555555555555554444444444444444444444444444444444433
No 19
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.27 E-value=5.3e-05 Score=99.62 Aligned_cols=65 Identities=12% Similarity=0.087 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 713 EARVEEREKEIESLLESNNEQRASTVKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKLDEMQQEL 780 (910)
Q Consensus 713 E~rl~e~eee~e~l~~r~~~qr~~~i~~Le~~le~e~~~~~ea~~r~e~l~~ql~~~k~~i~~l~~e~ 780 (910)
...+.++..++..+ ...+... ....+..........++.+......+..++..++.+|..++.++
T Consensus 1027 ~~~l~el~~eI~~l-~~~~~~~--~~~~~~~e~~~l~~~~~~l~~~~a~l~g~~k~le~qi~~l~~eL 1091 (1311)
T TIGR00606 1027 ENELKEVEEELKQH-LKEMGQM--QVLQMKQEHQKLEENIDLIKRNHVLALGRQKGYEKEIKHFKKEL 1091 (1311)
T ss_pred HHHHHHHHHHHHHH-HHHHhhc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556666666666 4444443 44556666666666666666666666666666666666666666
No 20
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.27 E-value=5.3e-05 Score=99.33 Aligned_cols=16 Identities=0% Similarity=-0.064 Sum_probs=10.3
Q ss_pred cCCcccChHHHHHHHH
Q 002544 154 VGATVLTGPVLIGITE 169 (910)
Q Consensus 154 i~G~~ltg~~l~~l~~ 169 (910)
++|.+++...+..++.
T Consensus 112 ~n~~~~~~~~~~~~l~ 127 (1164)
T TIGR02169 112 LNGQRVRLSEIHDFLA 127 (1164)
T ss_pred ECCccccHHHHHHHHH
Confidence 4777777666655554
No 21
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=99.27 E-value=5e-05 Score=98.80 Aligned_cols=63 Identities=14% Similarity=0.212 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 555 LTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQK 617 (910)
Q Consensus 555 i~~l~~~lee~~~ki~~le~e~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~e~~el~~~ 617 (910)
+..+...++.+.............++.+...+....+.+...+..+...+..+..++.++...
T Consensus 471 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~ 533 (1201)
T PF12128_consen 471 LEQADKRLEQAQEQQNQAQQAVEELQAEEQELRKERDQAEEELRQARRELEELRAQIAELQRQ 533 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444444444444444444444555555555555555555555555555555555555444
No 22
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=99.23 E-value=7.6e-05 Score=97.03 Aligned_cols=182 Identities=23% Similarity=0.322 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 002544 599 SFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAARKGKSEFENLAMERMAVIERVQ 678 (910)
Q Consensus 599 ~lEk~~~~Le~e~~el~~~l~e~~~~~eE~e~~l~~~e~e~~~~~~~~e~l~~e~~~~~~e~~e~~r~~~e~~~~ie~~~ 678 (910)
.+...+..++.++..+...+.....++..++..+..+......+....+.+..........+..++..+.....++..+.
T Consensus 734 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 813 (1163)
T COG1196 734 QLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALE 813 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333444444444443333333333333333333333444444444444444455555
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 679 RQIESLERQKTDLTNEVNRIRESELEALSKVALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERRSRAAANAM 758 (910)
Q Consensus 679 ~~ie~Le~e~~~Le~Ele~~~~~~~~~~~~~~elE~rl~e~eee~e~l~~r~~~qr~~~i~~Le~~le~e~~~~~ea~~r 758 (910)
.++........++..++..+......+...+..+...+...+..++.+ ..........+..+...+...+..+..+...
T Consensus 814 ~~~~~~~~~~~~~~~ei~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~l~~~~~~~~~l~~~l~~~~~~~~~l~~~ 892 (1163)
T COG1196 814 RELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEEL-KEELEELEAEKEELEDELKELEEEKEELEEE 892 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555555544444444555555444444444 3333334444444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 002544 759 AERLSLEVQSAQAKLDEMQQELT 781 (910)
Q Consensus 759 ~e~l~~ql~~~k~~i~~l~~e~~ 781 (910)
+..+...+..++..+..+.....
T Consensus 893 l~~~~~~~~~~~~~~~~~~~~~~ 915 (1163)
T COG1196 893 LRELESELAELKEEIEKLRERLE 915 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444433333
No 23
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.20 E-value=1.5e-06 Score=113.84 Aligned_cols=57 Identities=18% Similarity=0.252 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 558 LRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYL 614 (910)
Q Consensus 558 l~~~lee~~~ki~~le~e~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~e~~el 614 (910)
+...+..+..++..++..+..++.++..+...+......+..+...+..+..++..+
T Consensus 292 l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~ 348 (1164)
T TIGR02169 292 VKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEE 348 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333333333333333333333333
No 24
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=99.15 E-value=8.1e-05 Score=90.44 Aligned_cols=42 Identities=17% Similarity=0.137 Sum_probs=28.4
Q ss_pred HHHHhcC--CCCCCccchHHHHHHHHHHHH-HHHHHHHHHhhccc
Q 002544 171 YLDAINN--GAVPTISSSWQSVEEAECRRA-YDSATETYMSTFDR 212 (910)
Q Consensus 171 yv~ain~--g~vP~i~sa~~~~~~~e~~~a-~~~A~~~Y~~~m~~ 212 (910)
|++-|=+ +-+|.|+-.-..+....+..+ ...++.+|...+..
T Consensus 255 YLEDIIGT~ry~~~I~~~~~rv~~L~e~~sek~~~~k~~e~ek~~ 299 (1293)
T KOG0996|consen 255 YLEDIIGTNRYKEPIEELMRRVERLNEDRSEKENRVKLVEKEKKA 299 (1293)
T ss_pred HHHHHhcccccchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 4555543 458999877777776665544 66788888877654
No 25
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=99.15 E-value=6.5e-05 Score=88.99 Aligned_cols=98 Identities=17% Similarity=0.200 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 002544 672 AVIERVQRQIESLERQKTDLTNEVNRIRESELEALSKVALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERRS 751 (910)
Q Consensus 672 ~~ie~~~~~ie~Le~e~~~Le~Ele~~~~~~~~~~~~~~elE~rl~e~eee~e~l~~r~~~qr~~~i~~Le~~le~e~~~ 751 (910)
.........+.+|+.++..+..+++.+.............+-..++....+.+.. +......+..+..+..+++..+..
T Consensus 330 e~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~~k~~~~~l~~~Lqql~~Eae~A-k~ea~~~~~E~~~~k~E~e~~ka~ 408 (522)
T PF05701_consen 330 EREKEASSEVSSLEAELNKTRSELEAAKAEEEKAKEAMSELPKALQQLSSEAEEA-KKEAEEAKEEVEKAKEEAEQTKAA 408 (522)
T ss_pred HHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444455555555555555554444333333444555555555555555 444444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 002544 752 RAAANAMAERLSLEVQSAQ 770 (910)
Q Consensus 752 ~~ea~~r~e~l~~ql~~~k 770 (910)
...+..|+.....++..++
T Consensus 409 i~t~E~rL~aa~ke~eaaK 427 (522)
T PF05701_consen 409 IKTAEERLEAALKEAEAAK 427 (522)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444433333
No 26
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=99.12 E-value=0.00022 Score=92.91 Aligned_cols=87 Identities=18% Similarity=0.297 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 344 RLIDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSL 423 (910)
Q Consensus 344 rl~~~~eke~~~L~~e~~~le~e~e~l~k~lee~e~~~~e~~k~le~~i~el~~~lee~~~~~~~l~~~~~~Le~e~~~L 423 (910)
++..........+..++..+.+++..+...+..++.....|...=-.++......+.+....+..+...+..|.....++
T Consensus 299 ~l~~~~~e~~~~~~~~~~~~~~~l~~~~~~L~~i~~~~~~ye~~~i~~~~~~~~~l~~~~~~~~~l~~~~~~Lt~~~~di 378 (1201)
T PF12128_consen 299 KLEDEIKELRDELNKELSALNADLARIKSELDEIEQQKKDYEDADIEQLIARVDQLPEWRNELENLQEQLDLLTSKHQDI 378 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455556666666666666666666666653333321111111111333334444444444444444444444
Q ss_pred HHHHHHH
Q 002544 424 SKTVDSL 430 (910)
Q Consensus 424 ~~qle~~ 430 (910)
....+..
T Consensus 379 ~~ky~~~ 385 (1201)
T PF12128_consen 379 ESKYNKL 385 (1201)
T ss_pred HHHHHHH
Confidence 4444433
No 27
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=99.12 E-value=0.0002 Score=92.04 Aligned_cols=76 Identities=13% Similarity=0.210 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHH
Q 002544 705 ALSKVALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERRSRAAANAMAERLSLE--------VQSAQAKLDEM 776 (910)
Q Consensus 705 ~~~~~~elE~rl~e~eee~e~l~~r~~~qr~~~i~~Le~~le~e~~~~~ea~~r~e~l~~q--------l~~~k~~i~~l 776 (910)
...++++|..++..+..++..+ +..+.+...+|....+.+...+.+-..-..|+..+... +.++++.|..+
T Consensus 1241 ~~~k~qEl~~~i~kl~~el~pl-q~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~k~~d~~~~~kL~~ei~~L 1319 (1822)
T KOG4674|consen 1241 NLEKIQELRDKIEKLNFELAPL-QNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEKYKDSDKNDYEKLKSEISRL 1319 (1822)
T ss_pred HHHHHHHHHHHHHHHHhhHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Confidence 3334567777777777777777 77777777777777777766666666666666665444 66777777777
Q ss_pred HHHHh
Q 002544 777 QQELT 781 (910)
Q Consensus 777 ~~e~~ 781 (910)
.+++.
T Consensus 1320 k~el~ 1324 (1822)
T KOG4674|consen 1320 KEELE 1324 (1822)
T ss_pred HHHHH
Confidence 66666
No 28
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=99.08 E-value=2.4e-05 Score=90.11 Aligned_cols=50 Identities=14% Similarity=0.158 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 552 EQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFE 601 (910)
Q Consensus 552 e~ei~~l~~~lee~~~ki~~le~e~~~L~~el~dL~~~le~~~~~~~~lE 601 (910)
..++..+..++..++..+...+.....|..++.++....+..-..++...
T Consensus 282 ~~e~e~LkeqLr~~qe~lqaSqq~~~~L~~EL~~~~~~RDrt~aeLh~aR 331 (546)
T PF07888_consen 282 QQENEALKEQLRSAQEQLQASQQEAELLRKELSDAVNVRDRTMAELHQAR 331 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444555555555555555555555566666555555554444444443
No 29
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=99.08 E-value=0.00026 Score=90.89 Aligned_cols=190 Identities=17% Similarity=0.208 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 002544 589 KLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAARKGKSEFENLAM 668 (910)
Q Consensus 589 ~le~~~~~~~~lEk~~~~Le~e~~el~~~l~e~~~~~eE~e~~l~~~e~e~~~~~~~~e~l~~e~~~~~~e~~e~~r~~~ 668 (910)
.+..+......+..++..+.-++.+++..|.+...++....-.+.....++.++......+..+++.....+..+++.+.
T Consensus 385 sLtk~ys~~~~~qqqle~~~lele~~~~~l~s~~eev~~~~p~lk~qr~~~e~~~~~~~~l~~el~~~~q~~~~~e~~~~ 464 (1822)
T KOG4674|consen 385 SLTKLYSKYSKLQQQLESLKLELERLQNILSSFKEEVKQKAPILKEQRSELERMQETKAELSEELDFSNQKIQKLEKELE 464 (1822)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHhhHH
Q 002544 669 ERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSKV----------------ALLEARVEEREKEIESLLESNNE 732 (910)
Q Consensus 669 e~~~~ie~~~~~ie~Le~e~~~Le~Ele~~~~~~~~~~~~~----------------~elE~rl~e~eee~e~l~~r~~~ 732 (910)
.+..++..+.+++..+...+.+|..++.-+..++.+..... .-+..++-++..- ..+ ..++.
T Consensus 465 ~l~~~~~~~~renk~l~~~~sdlsrqv~~Ll~el~e~~~~~~~~~~s~~~~~es~S~~iIse~Lv~F~nI-~eL-qekN~ 542 (1822)
T KOG4674|consen 465 SLKKQLNDLERENKLLEQQISDLSRQVNVLLLELDELRKGSKITVSSDSTENESDSEEIISERLVEFSNI-NEL-QEKNV 542 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCccccccCccHHHHHHHHHHHhccH-HHH-HHHHH
Confidence 66666666666666666666666665544444443333221 2344444444322 223 34455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002544 733 QRASTVKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKLDEMQQELTK 782 (910)
Q Consensus 733 qr~~~i~~Le~~le~e~~~~~ea~~r~e~l~~ql~~~k~~i~~l~~e~~~ 782 (910)
.+...|+.|...++..... .-..-...++.-+..+...|..+...+++
T Consensus 543 eLL~~vR~Lae~lE~~E~~--~~~~~~~~~k~~~~~a~e~i~~L~~~l~e 590 (1822)
T KOG4674|consen 543 ELLNAVRELAEKLEAAEKT--QDKTLQNILKETINEASEKIAELEKELEE 590 (1822)
T ss_pred HHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5545566666655433222 11112222333355566666665555553
No 30
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=99.04 E-value=0.00022 Score=86.77 Aligned_cols=60 Identities=15% Similarity=0.269 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhhhhcchhhh
Q 002544 737 TVKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKLDEMQQELTKARLNETALGSKLRA 796 (910)
Q Consensus 737 ~i~~Le~~le~e~~~~~ea~~r~e~l~~ql~~~k~~i~~l~~e~~~~~~~~~~~~~~~~~ 796 (910)
.+..+..........+.++..-+..+..++..+++.++.+.....++-.+..-+++|+-+
T Consensus 964 ~~~~~~~k~~E~~~~~~e~~~~~~E~k~~~~~~k~~~e~i~k~~~~lk~~rId~~~K~e~ 1023 (1293)
T KOG0996|consen 964 ELKGLEEKAAELEKEYKEAEESLKEIKKELRDLKSELENIKKSENELKAERIDIENKLEA 1023 (1293)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHH
Confidence 334444444444444555555555556666666666666655555544444434555444
No 31
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=99.03 E-value=0.00014 Score=87.48 Aligned_cols=237 Identities=15% Similarity=0.170 Sum_probs=140.4
Q ss_pred HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 552 EQCLTTLRLELKAAESK-----MRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFE 626 (910)
Q Consensus 552 e~ei~~l~~~lee~~~k-----i~~le~e~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~e~~el~~~l~e~~~~~e 626 (910)
..++..++..+...... +...+..+..+..+|..|-..++.........++....+...+.++++....+...++
T Consensus 255 ~~~i~~l~~~i~~~~~~l~~l~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~ 334 (569)
T PRK04778 255 EKEIQDLKEQIDENLALLEELDLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEID 334 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555553333 4555667777888888888888888888888888888888888888887777776666
Q ss_pred HHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 002544 627 EVQER----------CKVAEKEAKKATELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVN 696 (910)
Q Consensus 627 E~e~~----------l~~~e~e~~~~~~~~e~l~~e~~~~~~e~~e~~r~~~e~~~~ie~~~~~ie~Le~e~~~Le~Ele 696 (910)
.+... ...+++++..+...+..+...+...... ++.+...++.+..++..++.....+...+.
T Consensus 335 ~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~-------ysel~e~leel~e~leeie~eq~ei~e~l~ 407 (569)
T PRK04778 335 RVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIA-------YSELQEELEEILKQLEEIEKEQEKLSEMLQ 407 (569)
T ss_pred HHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66665 3444444444444444333333333322 444445555555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q 002544 697 RIRESELEALSKVALLEARVEERE----------------KEIESLLESNNEQRASTVKKLEDLLESERR-SRAAANAMA 759 (910)
Q Consensus 697 ~~~~~~~~~~~~~~elE~rl~e~e----------------ee~e~l~~r~~~qr~~~i~~Le~~le~e~~-~~~ea~~r~ 759 (910)
.++....++..++..+...+.+.. ..+... ..........+.. +..+-.+.. .+.++..++
T Consensus 408 ~Lrk~E~eAr~kL~~~~~~L~~ikr~l~k~~lpgip~~y~~~~~~~-~~~i~~l~~~L~~-g~VNm~ai~~e~~e~~~~~ 485 (569)
T PRK04778 408 GLRKDELEAREKLERYRNKLHEIKRYLEKSNLPGLPEDYLEMFFEV-SDEIEALAEELEE-KPINMEAVNRLLEEATEDV 485 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHH-HHHHHHHHHHhcc-CCCCHHHHHHHHHHHHHHH
Confidence 555555544444444433333332 233333 3444445556666 556655555 889999999
Q ss_pred HHHHHH---HHHHHHHHHHHHHHHhhhhchhhhhcchhhhh
Q 002544 760 ERLSLE---VQSAQAKLDEMQQELTKARLNETALGSKLRAV 797 (910)
Q Consensus 760 e~l~~q---l~~~k~~i~~l~~e~~~~~~~~~~~~~~~~~~ 797 (910)
+.+..+ +..+...+..+.++-..+|..-...+..++-+
T Consensus 486 ~~L~~q~~dL~~~a~~lE~~Iqy~nRfr~~~~~V~~~f~~A 526 (569)
T PRK04778 486 ETLEEETEELVENATLTEQLIQYANRYRSDNEEVAEALNEA 526 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHH
Confidence 998888 55566666666677555555444455555543
No 32
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=99.02 E-value=0.00013 Score=87.25 Aligned_cols=67 Identities=12% Similarity=0.085 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 561 ELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEE 627 (910)
Q Consensus 561 ~lee~~~ki~~le~e~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~e~~el~~~l~e~~~~~eE 627 (910)
.+++..++.-.++++.+.|..+++.|...+........+++..-+.|..+.+.+..........+.+
T Consensus 395 s~Ee~~SK~leleke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~s~~r 461 (1195)
T KOG4643|consen 395 SYEELISKHLELEKEHKNLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTVTRSLSR 461 (1195)
T ss_pred hHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 6677777777777777777777777777777777777777777777777777776654444443333
No 33
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=99.02 E-value=5.8e-05 Score=87.05 Aligned_cols=97 Identities=16% Similarity=0.238 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 540 EMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYK 619 (910)
Q Consensus 540 ei~~~~~kl~~~e~ei~~l~~~lee~~~ki~~le~e~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~e~~el~~~l~ 619 (910)
++..++..+...+++..-+..+|..+.+.-+..-.+....+.+..++..++.++...+ ......+.+++..++....
T Consensus 291 qLr~~qe~lqaSqq~~~~L~~EL~~~~~~RDrt~aeLh~aRLe~aql~~qLad~~l~l---ke~~~q~~qEk~~l~~~~e 367 (546)
T PF07888_consen 291 QLRSAQEQLQASQQEAELLRKELSDAVNVRDRTMAELHQARLEAAQLKLQLADASLEL---KEGRSQWAQEKQALQHSAE 367 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444555556666655555555555555656666666665555444332 3333444555555544333
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 002544 620 SEFERFEEVQERCKVAEKEA 639 (910)
Q Consensus 620 e~~~~~eE~e~~l~~~e~e~ 639 (910)
....++..+..++..+++.+
T Consensus 368 ~~k~~ie~L~~el~~~e~~l 387 (546)
T PF07888_consen 368 ADKDEIEKLSRELQMLEEHL 387 (546)
T ss_pred HhHHHHHHHHHHHHHHHHHH
Confidence 33334455555554444433
No 34
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=99.01 E-value=0.00019 Score=83.36 Aligned_cols=115 Identities=16% Similarity=0.170 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH
Q 002544 552 EQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFE---RFEEV 628 (910)
Q Consensus 552 e~ei~~l~~~lee~~~ki~~le~e~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~e~~el~~~l~e~~~---~~eE~ 628 (910)
..++.+++-.|.++.-+.+++...+..|+.+-..+......+.......+..+..|.....+.++++++... +++..
T Consensus 329 trqkadirc~LlEarrk~egfddk~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~~l~aerqeQidelKn~if~~e~~ 408 (1265)
T KOG0976|consen 329 TRQKADIRCALLEARRKAEGFDDKLNELEKKRDMALMDVRSIQEKKENVEEELQSLLELQAERQEQIDELKNHIFRLEQG 408 (1265)
T ss_pred HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhc
Confidence 344555555555555555555555555555555555555555544445555555555555555555444443 23444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 002544 629 QERCKVAEKEAKKATELADRERAEAAAARKGKSEFENL 666 (910)
Q Consensus 629 e~~l~~~e~e~~~~~~~~e~l~~e~~~~~~e~~e~~r~ 666 (910)
...-+.+..++.++.++.+.+...+..+......++..
T Consensus 409 ~~dhe~~kneL~~a~ekld~mgthl~mad~Q~s~fk~L 446 (1265)
T KOG0976|consen 409 KKDHEAAKNELQEALEKLDLMGTHLSMADYQLSNFKVL 446 (1265)
T ss_pred cchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhHHHH
Confidence 44555566666666666666666655555444444443
No 35
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=98.96 E-value=0.00028 Score=82.10 Aligned_cols=80 Identities=15% Similarity=0.172 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 575 EISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAA 654 (910)
Q Consensus 575 e~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~e~~el~~~l~e~~~~~eE~e~~l~~~e~e~~~~~~~~e~l~~e~~ 654 (910)
+...+..++.++.-.+-+++..+..+...+..|++..+.+..... .++...++.+.+++.+.+..++....++
T Consensus 324 enmkltrqkadirc~LlEarrk~egfddk~~eLEKkrd~al~dvr-------~i~e~k~nve~elqsL~~l~aerqeQid 396 (1265)
T KOG0976|consen 324 ENMKLTRQKADIRCALLEARRKAEGFDDKLNELEKKRDMALMDVR-------SIQEKKENVEEELQSLLELQAERQEQID 396 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555555555555555555444322 2333333333444444444444444444
Q ss_pred HHHHhhH
Q 002544 655 AARKGKS 661 (910)
Q Consensus 655 ~~~~e~~ 661 (910)
.+..-+.
T Consensus 397 elKn~if 403 (1265)
T KOG0976|consen 397 ELKNHIF 403 (1265)
T ss_pred HHHHhhh
Confidence 4433333
No 36
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=98.95 E-value=0.00038 Score=82.58 Aligned_cols=36 Identities=28% Similarity=0.354 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 411 GENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLT 446 (910)
Q Consensus 411 ~~~~~Le~e~~~L~~qle~~k~e~~~~kkk~Ee~~~ 446 (910)
.++.....++......|..++.++...+..|...+.
T Consensus 116 ~ele~~~~q~~~~~~eL~~~k~EL~~lr~e~~~~~~ 151 (522)
T PF05701_consen 116 AELESAREQYASAVAELDSVKQELEKLRQELASALD 151 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555566666666666666666655443
No 37
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.86 E-value=7.9e-05 Score=82.93 Aligned_cols=101 Identities=22% Similarity=0.300 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002544 385 LKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKS 464 (910)
Q Consensus 385 ~k~le~~i~el~~~lee~~~~~~~l~~~~~~Le~e~~~L~~qle~~k~e~~~~kkk~Ee~~~e~~~~k~kl~~eleel~~ 464 (910)
...|+.++.++...++.....+..+..++..+..+..++. .+|+.... ....+..++..++.
T Consensus 49 ~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r--------------~k~e~e~~----~~~~le~el~~lrk 110 (312)
T PF00038_consen 49 KEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLR--------------RKYEEELA----ERKDLEEELESLRK 110 (312)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHH----HHHHHHHHHHHHHH
T ss_pred ccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHH--------------HHHHHHHH----HHHHHHHHHhhhhh
Confidence 4457777777766666666666655555555555444444 44433222 25567788888888
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 465 RSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKA 503 (910)
Q Consensus 465 ~~ee~e~~~~~le~~~~~~q~Elee~~~k~e~~~~~~k~ 503 (910)
.+++.......++..+..++.+++-++.-|+..+...+.
T Consensus 111 ~ld~~~~~r~~le~~i~~L~eEl~fl~~~heeEi~~L~~ 149 (312)
T PF00038_consen 111 DLDEETLARVDLENQIQSLKEELEFLKQNHEEEIEELRE 149 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTST
T ss_pred hhhhhhhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhhhh
Confidence 899888888999999999999999888888887654443
No 38
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.86 E-value=4.2e-06 Score=89.04 Aligned_cols=223 Identities=22% Similarity=0.278 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 537 KEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQ 616 (910)
Q Consensus 537 le~ei~~~~~kl~~~e~ei~~l~~~lee~~~ki~~le~e~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~e~~el~~ 616 (910)
+..++..+..++..+...+......+..++..+.++.+.+..+...+......+..+...+..+++.....+..+..++.
T Consensus 6 l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~lE~ 85 (237)
T PF00261_consen 6 LKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKVLEN 85 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444444444444444444455555555555555555544444444444444444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 002544 617 KYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVN 696 (910)
Q Consensus 617 ~l~e~~~~~eE~e~~l~~~e~e~~~~~~~~e~l~~e~~~~~~e~~e~~r~~~e~~~~ie~~~~~ie~Le~e~~~Le~Ele 696 (910)
.......+++.++.++..+......+...+++....+.. +...+......++.+...+..|+.++..+...+.
T Consensus 86 r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~-------~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk 158 (237)
T PF00261_consen 86 REQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKV-------LEQELERAEERAEAAESKIKELEEELKSVGNNLK 158 (237)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHH
Confidence 444444444444444444444443333333322222222 2222233333333333333344444444444443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 697 RIRESELEALSKVALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERRSRAAANAMAERLSLEVQ 767 (910)
Q Consensus 697 ~~~~~~~~~~~~~~elE~rl~e~eee~e~l~~r~~~qr~~~i~~Le~~le~e~~~~~ea~~r~e~l~~ql~ 767 (910)
.+......+..+...++.++..+...+... ..+.......+..|+..++.....+......+..++.+++
T Consensus 159 ~lE~~~~~~~~re~~~e~~i~~L~~~lkea-E~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~eld 228 (237)
T PF00261_consen 159 SLEASEEKASEREDEYEEKIRDLEEKLKEA-ENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEELD 228 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhhhhhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333343444444444444444444 3444444444555555555554454444444554444333
No 39
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.84 E-value=6.6e-06 Score=87.54 Aligned_cols=90 Identities=20% Similarity=0.236 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 606 IMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLE 685 (910)
Q Consensus 606 ~Le~e~~el~~~l~e~~~~~eE~e~~l~~~e~e~~~~~~~~e~l~~e~~~~~~e~~e~~r~~~e~~~~ie~~~~~ie~Le 685 (910)
.++.++..+.....+...+++++..++..++..+.++..+++.+...+..+..++......+..+....+.+......++
T Consensus 96 ~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e 175 (237)
T PF00261_consen 96 ELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYE 175 (237)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHH
Confidence 33333333333333334444444444444444444444444444444444444444433333333333333333333333
Q ss_pred HHHhHHHHHH
Q 002544 686 RQKTDLTNEV 695 (910)
Q Consensus 686 ~e~~~Le~El 695 (910)
..+..|...+
T Consensus 176 ~~i~~L~~~l 185 (237)
T PF00261_consen 176 EKIRDLEEKL 185 (237)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 40
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=98.80 E-value=0.0015 Score=79.98 Aligned_cols=33 Identities=30% Similarity=0.293 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 002544 336 GPILDLVKRLIDQIGSERSSLMLKYRSIEDNMK 368 (910)
Q Consensus 336 ~~il~~~~rl~~~~eke~~~L~~e~~~le~e~e 368 (910)
...++.++.++...+.++..++.+|..++..+.
T Consensus 220 ~~~~~~~~~~i~~~~e~i~~l~k~i~e~~e~~~ 252 (1074)
T KOG0250|consen 220 MESLDHAKELIDLKEEEIKNLKKKIKEEEEKLD 252 (1074)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 344566666666667777777777766665444
No 41
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=98.78 E-value=0.00083 Score=79.45 Aligned_cols=140 Identities=19% Similarity=0.275 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 546 TKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKEL---SEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEF 622 (910)
Q Consensus 546 ~kl~~~e~ei~~l~~~lee~~~ki~~le~e~~~L~~el~dL---~~~le~~~~~~~~lEk~~~~Le~e~~el~~~l~e~~ 622 (910)
.+++....++.++.+.-+.+..+++.++..+..|+.+++.. +.-.+.+...--++|.+++.|+.++.+|+.
T Consensus 403 kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAAlGAE~MV~qLtdknlnlEekVklLeetv~dlEa------ 476 (1243)
T KOG0971|consen 403 KELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDAALGAEEMVEQLTDKNLNLEEKVKLLEETVGDLEA------ 476 (1243)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHhhccCHHHHHHHHHHHHHHHHH------
Confidence 33333333444444444444444444444444444444321 112222333444677777777777777765
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 002544 623 ERFEEVQERCKVAEKE-AKKATELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTN 693 (910)
Q Consensus 623 ~~~eE~e~~l~~~e~e-~~~~~~~~e~l~~e~~~~~~e~~e~~r~~~e~~~~ie~~~~~ie~Le~e~~~Le~ 693 (910)
++++.+++.+...+ ...++++++.+...+..++..+...+.-+..+..-|-..+..+..|..++..+.+
T Consensus 477 --lee~~EQL~Esn~ele~DLreEld~~~g~~kel~~r~~aaqet~yDrdqTI~KfRelva~Lqdqlqe~~d 546 (1243)
T KOG0971|consen 477 --LEEMNEQLQESNRELELDLREELDMAKGARKELQKRVEAAQETVYDRDQTIKKFRELVAHLQDQLQELTD 546 (1243)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55566666555444 3344555555555544555555555554555555555555555555555555444
No 42
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=98.72 E-value=0.0022 Score=77.12 Aligned_cols=17 Identities=12% Similarity=0.112 Sum_probs=7.1
Q ss_pred HHHHHHHHHhhhHHHHH
Q 002544 455 VCSEIEVLKSRSTAAEA 471 (910)
Q Consensus 455 l~~eleel~~~~ee~e~ 471 (910)
+=.++++|+..+.+...
T Consensus 228 ~P~ql~el~~gy~~m~~ 244 (569)
T PRK04778 228 LPDQLQELKAGYRELVE 244 (569)
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 33444444444443333
No 43
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.70 E-value=0.00057 Score=76.07 Aligned_cols=46 Identities=20% Similarity=0.243 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 452 EDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVA 497 (910)
Q Consensus 452 k~kl~~eleel~~~~ee~e~~~~~le~~~~~~q~Elee~~~k~e~~ 497 (910)
+..+..++.+++..++++......+.-....+..++++++.+|+..
T Consensus 49 ~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e 94 (312)
T PF00038_consen 49 KEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEE 94 (312)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHH
Confidence 4556678888899999999999999999999999999999999985
No 44
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.65 E-value=0.0018 Score=77.86 Aligned_cols=210 Identities=15% Similarity=0.205 Sum_probs=112.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 002544 394 DKKKLADDYTSRINNLQGENISLRE---KSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAE 470 (910)
Q Consensus 394 el~~~lee~~~~~~~l~~~~~~Le~---e~~~L~~qle~~k~e~~~~kkk~Ee~~~e~~~~k~kl~~eleel~~~~ee~e 470 (910)
+++.++...++.+.+++.++..++. ...+|..+++-....+.-..++.+..- -.++...+..+...+++.+
T Consensus 681 ~~~~~~~~~q~el~~le~eL~~le~~~~kf~~l~~ql~l~~~~l~l~~~r~~~~e------~~~~~~~~~~~~e~v~e~~ 754 (1174)
T KOG0933|consen 681 QAQKELRAIQKELEALERELKSLEAQSQKFRDLKQQLELKLHELALLEKRLEQNE------FHKLLDDLKELLEEVEESE 754 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCh------HhhHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555543 234444455444444444444443211 2234555666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 471 ARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEH 550 (910)
Q Consensus 471 ~~~~~le~~~~~~q~Elee~~~k~e~~~~~~k~~lek~~~~~e~~~~e~q~~~~~~~~E~~~~~~ele~ei~~~~~kl~~ 550 (910)
..+....+.....+.++..+ +.....+++.-++....+.+.++.+..+.++...+++.... +...+..+.++
T Consensus 755 ~~Ike~~~~~k~~~~~i~~l----E~~~~d~~~~re~rlkdl~keik~~k~~~e~~~~~~ek~~~----e~e~l~lE~e~ 826 (1174)
T KOG0933|consen 755 QQIKEKERALKKCEDKISTL----EKKMKDAKANRERRLKDLEKEIKTAKQRAEESSKELEKREN----EYERLQLEHEE 826 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHhHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 66666555555555555422 22222344455555555555555555555554444443333 44455556666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 551 AEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQK 617 (910)
Q Consensus 551 ~e~ei~~l~~~lee~~~ki~~le~e~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~e~~el~~~ 617 (910)
++.++...+..+......|+.+..++..+...+.........+...+......++....++..+-..
T Consensus 827 l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt~i~~~~~~ 893 (1174)
T KOG0933|consen 827 LEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDIDTEISGLLTS 893 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhHHHhhhhhH
Confidence 6666666666666666666666666666666666666666666666666666666666555444333
No 45
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=98.64 E-value=0.00066 Score=78.54 Aligned_cols=131 Identities=16% Similarity=0.252 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 452 EDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFS 531 (910)
Q Consensus 452 k~kl~~eleel~~~~ee~e~~~~~le~~~~~~q~Elee~~~k~e~~~~~~k~~lek~~~~~e~~~~e~q~~~~~~~~E~~ 531 (910)
+..+..++..+..-+++.......++.....++.++++++.+|+.+.......
T Consensus 87 k~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~--------------------------- 139 (546)
T KOG0977|consen 87 KAKYEAELATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGA--------------------------- 139 (546)
T ss_pred hHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhh---------------------------
Confidence 33455677788888888888899999999999999999998888853211110
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 532 STLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDK 611 (910)
Q Consensus 532 ~~~~ele~ei~~~~~kl~~~e~ei~~l~~~lee~~~ki~~le~e~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~e~ 611 (910)
.+.+..+...+..++.++..++..+..++..+..+.+++..|..+|..+..+++....-...++..+..|..++
T Consensus 140 ------re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel 213 (546)
T KOG0977|consen 140 ------REKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEEL 213 (546)
T ss_pred ------HHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 11112222223333333444444445555555555566666666666666666666655555666666555555
Q ss_pred HHHH
Q 002544 612 VYLE 615 (910)
Q Consensus 612 ~el~ 615 (910)
.-+.
T Consensus 214 ~f~~ 217 (546)
T KOG0977|consen 214 AFLK 217 (546)
T ss_pred HHHH
Confidence 5554
No 46
>PRK04863 mukB cell division protein MukB; Provisional
Probab=98.62 E-value=0.0084 Score=78.59 Aligned_cols=15 Identities=7% Similarity=0.036 Sum_probs=7.6
Q ss_pred CCCChHHHHHHHHhH
Q 002544 318 HGPGKWQKLATFLQQ 332 (910)
Q Consensus 318 ~gp~k~~~l~~fl~~ 332 (910)
.||.=+.+...|+..
T Consensus 263 I~~~~~~~aad~~r~ 277 (1486)
T PRK04863 263 ITESTNYVAADYMRH 277 (1486)
T ss_pred hhhhhhhhHHHHhhC
Confidence 344444555556553
No 47
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=98.56 E-value=0.0027 Score=75.26 Aligned_cols=54 Identities=17% Similarity=0.278 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHhhhHHH
Q 002544 416 LREKSSSLSKTVDSLKNEISDWKRKYDQ------VLTKQKAMEDQVCSEIEVLKSRSTAA 469 (910)
Q Consensus 416 Le~e~~~L~~qle~~k~e~~~~kkk~Ee------~~~e~~~~k~kl~~eleel~~~~ee~ 469 (910)
|...+.+|+..|+.++.+..+-+.++-+ .++.+.+.+.++..+..+|++++..+
T Consensus 229 Lr~QvrdLtEkLetlR~kR~EDk~Kl~ElekmkiqleqlqEfkSkim~qqa~Lqrel~ra 288 (1243)
T KOG0971|consen 229 LRAQVRDLTEKLETLRLKRAEDKAKLKELEKMKIQLEQLQEFKSKIMEQQADLQRELKRA 288 (1243)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555666666666666655544444321 11334444444444444444444333
No 48
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=98.54 E-value=0.0064 Score=72.92 Aligned_cols=245 Identities=15% Similarity=0.193 Sum_probs=139.0
Q ss_pred HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 553 QCLTTLRLELKAAESK-----MRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEE 627 (910)
Q Consensus 553 ~ei~~l~~~lee~~~k-----i~~le~e~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~e~~el~~~l~e~~~~~eE 627 (910)
.++..+...+...... +...+.....+..+|..|-..++..-......++....+...+.++......+...++.
T Consensus 252 ~~i~~i~~~l~~~~~~L~~l~l~~~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e~~~ 331 (560)
T PF06160_consen 252 EEIEQIEEQLEEALALLKNLELDEVEEENEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKEELER 331 (560)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444443 35556667777777777777777777777777777777777777777765555555555
Q ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 002544 628 VQERCKVAEK---EAKKATELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESELE 704 (910)
Q Consensus 628 ~e~~l~~~e~---e~~~~~~~~e~l~~e~~~~~~e~~e~~r~~~e~~~~ie~~~~~ie~Le~e~~~Le~Ele~~~~~~~~ 704 (910)
+.....-.+. ....+...+..+..........+.+-..-.+.+...+..+...+..++..-..+...+..++..+..
T Consensus 332 v~~sY~L~~~e~~~~~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~ 411 (560)
T PF06160_consen 332 VSQSYTLNHNELEIVRELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKE 411 (560)
T ss_pred HHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4443321111 1223333344444444444444444444466777777777777888888888888888888888887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--------HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 705 ALSKVALLEARVEEREKEIESL--------LESNNEQRASTVKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKLDEM 776 (910)
Q Consensus 705 ~~~~~~elE~rl~e~eee~e~l--------~~r~~~qr~~~i~~Le~~le~e~~~~~ea~~r~e~l~~ql~~~k~~i~~l 776 (910)
+...+..+...+.+....++.. ...........|..+...|..-+=. .+....++..+...|+.+
T Consensus 412 Ar~~l~~~~~~l~~ikR~lek~nLPGlp~~y~~~~~~~~~~i~~l~~~L~~~pin-------m~~v~~~l~~a~~~v~~L 484 (560)
T PF06160_consen 412 AREKLQKLKQKLREIKRRLEKSNLPGLPEDYLDYFFDVSDEIEELSDELNQVPIN-------MDEVNKQLEEAEDDVETL 484 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCcC-------HHHHHHHHHHHHHHHHHH
Confidence 7777777777666665555422 0011111222333333333333333 233444455555555555
Q ss_pred HHHHhhhhchhhhhcchhhhhhccccccccc
Q 002544 777 QQELTKARLNETALGSKLRAVSHGKRARADD 807 (910)
Q Consensus 777 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 (910)
......+--+.+ |--+ ++.+|-|.|...
T Consensus 485 ~~~t~~li~~A~-L~E~--~iQYaNRYR~~~ 512 (560)
T PF06160_consen 485 EEKTEELIDNAT-LAEQ--LIQYANRYRSDN 512 (560)
T ss_pred HHHHHHHHHHHH-HHHH--HHHHHhcccCCC
Confidence 555544333332 2222 377899888766
No 49
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=98.52 E-value=0.0088 Score=73.78 Aligned_cols=19 Identities=32% Similarity=0.600 Sum_probs=10.9
Q ss_pred HHHHHH--HHHHhccCCCccc
Q 002544 136 AGLDAL--TKFVFERTRPKQV 154 (910)
Q Consensus 136 ~~~~~l--~~~i~~~~~pK~i 154 (910)
-.++.+ ..||...++|-.+
T Consensus 186 lAldslH~mgyVHRDiKPDNv 206 (1317)
T KOG0612|consen 186 LALDSLHSMGYVHRDIKPDNV 206 (1317)
T ss_pred HHHHHHHhccceeccCCccee
Confidence 334444 3566667787664
No 50
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=98.52 E-value=0.0078 Score=73.09 Aligned_cols=133 Identities=12% Similarity=0.146 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 553 QCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERC 632 (910)
Q Consensus 553 ~ei~~l~~~lee~~~ki~~le~e~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~e~~el~~~l~e~~~~~eE~e~~l 632 (910)
.+|..|..++.+....+...+.-+..-...+.....-+..+... .++...++...+...+.|.........++..|
T Consensus 1511 eqi~~L~~~I~e~v~sL~nVd~IL~~T~~di~ra~~L~s~A~~a----~~~A~~v~~~ae~V~eaL~~Ad~Aq~~a~~ai 1586 (1758)
T KOG0994|consen 1511 EQIQQLTGEIQERVASLPNVDAILSRTKGDIARAENLQSEAERA----RSRAEDVKGQAEDVVEALEEADVAQGEAQDAI 1586 (1758)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHhhhhhHHHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666667777776666666666555555544433322222221 22222222333333333333333344444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 002544 633 KVAEKEAKKATELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVN 696 (910)
Q Consensus 633 ~~~e~e~~~~~~~~e~l~~e~~~~~~e~~e~~r~~~e~~~~ie~~~~~ie~Le~e~~~Le~Ele 696 (910)
+.+...+.-+...+.+. +++-...++.+.....++.++...++.|.......-.+..
T Consensus 1587 ~~a~~~~~~a~~~l~kv-------~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~qns~~A~ 1643 (1758)
T KOG0994|consen 1587 QGADRDIRLAQQLLAKV-------QEETAAAEKLATSATQQLGELETRMEELKHKAAQNSAEAK 1643 (1758)
T ss_pred HhhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence 44443333333333333 3333333444444445555555555555554444333333
No 51
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=98.52 E-value=0.0056 Score=71.18 Aligned_cols=187 Identities=16% Similarity=0.218 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 576 ISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAA 655 (910)
Q Consensus 576 ~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~e~~el~~~l~e~~~~~eE~e~~l~~~e~e~~~~~~~~e~l~~e~~~ 655 (910)
+...+.++.||..++......-..+.+.+..+..++..-+-+..++...+.. +.-+...+.........++..
T Consensus 445 lq~~ekev~dLe~~l~~~~~~eq~yskQVeeLKtELE~EkLKN~ELt~~~nk-------LslEkk~laQE~~~~~~elKk 517 (786)
T PF05483_consen 445 LQIREKEVHDLEIQLTTIKESEQHYSKQVEELKTELEQEKLKNTELTVNCNK-------LSLEKKQLAQETSDMALELKK 517 (786)
T ss_pred HHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhhhhHHH
Confidence 4455556666666666666555566666666555555433332222223333 322333333333333333333
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHH
Q 002544 656 ARKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSKV------------------ALLEARVE 717 (910)
Q Consensus 656 ~~~e~~e~~r~~~e~~~~ie~~~~~ie~Le~e~~~Le~Ele~~~~~~~~~~~~~------------------~elE~rl~ 717 (910)
.+.. +.....+-++.-.++++|+.....|..+++.++..+......+ ...++.+.
T Consensus 518 ~qed-------i~~~k~qee~~~kqie~Lee~~~~Lrneles~~eel~~k~~Ev~~kl~ksEen~r~~e~e~~~k~kq~k 590 (786)
T PF05483_consen 518 QQED-------INNSKKQEEKMLKQIENLEETNTQLRNELESVKEELKQKGEEVKCKLDKSEENARSIECEILKKEKQMK 590 (786)
T ss_pred HHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHhhhHHHHH
Confidence 3333 3333444455555666666666666666666665433222211 12233334
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 718 EREKEIESLLESNNEQRASTVKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKLDEMQ 777 (910)
Q Consensus 718 e~eee~e~l~~r~~~qr~~~i~~Le~~le~e~~~~~ea~~r~e~l~~ql~~~k~~i~~l~ 777 (910)
-++..+..+ ++..+....-|+.|+..+.+..+..+.-..+...+...+.+++..++.+.
T Consensus 591 ~lenk~~~L-rKqvEnk~K~ieeLqqeNk~LKKk~~aE~kq~~~~eikVn~L~~E~e~~k 649 (786)
T PF05483_consen 591 ILENKCNNL-RKQVENKNKNIEELQQENKALKKKITAESKQSNVYEIKVNKLQEELENLK 649 (786)
T ss_pred HHHHHHHHH-HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555 44444444466777777777766666666665555555555555554443
No 52
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=98.51 E-value=0.0012 Score=76.35 Aligned_cols=145 Identities=20% Similarity=0.241 Sum_probs=76.3
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 456 CSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLA 535 (910)
Q Consensus 456 ~~eleel~~~~ee~e~~~~~le~~~~~~q~Elee~~~k~e~~~~~~k~~lek~~~~~e~~~~e~q~~~~~~~~E~~~~~~ 535 (910)
..+|.+|..|+..--+++-.|+.+-..+..+++.++...-......++-.+-....+.+.+++..... +.++..+.
T Consensus 41 K~El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~r----a~~e~ei~ 116 (546)
T KOG0977|consen 41 KKELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARER----AKLEIEIT 116 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHH----HHHHHHHH
Confidence 36777888888888888888888888888888866654333222333333333333333333332222 33444455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 536 EKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREA 604 (910)
Q Consensus 536 ele~ei~~~~~kl~~~e~ei~~l~~~lee~~~ki~~le~e~~~L~~el~dL~~~le~~~~~~~~lEk~~ 604 (910)
.+..++.+++.++...+.........+......+..++.++..+...+..+..++..+..+...+...+
T Consensus 117 kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l 185 (546)
T KOG0977|consen 117 KLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREEL 185 (546)
T ss_pred HhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 555566666666665544444444444444444444444444444444444444444443333333333
No 53
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=98.50 E-value=0.0087 Score=72.70 Aligned_cols=43 Identities=35% Similarity=0.321 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHhhhhchhhhhcchhhh
Q 002544 754 AANAMAERLSLE----VQSAQAKLDEMQQELTKARLNETALGSKLRA 796 (910)
Q Consensus 754 ea~~r~e~l~~q----l~~~k~~i~~l~~e~~~~~~~~~~~~~~~~~ 796 (910)
.+.+|.+.|+.+ +..++++++.|..-....-.||-+|+.|--.
T Consensus 1686 ~ar~rAe~L~~eA~~Ll~~a~~kl~~l~dLe~~y~~~~~~L~~~~ae 1732 (1758)
T KOG0994|consen 1686 AARERAEQLRTEAEKLLGQANEKLDRLKDLELEYLRNEQALEDKAAE 1732 (1758)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 444555555554 5566667766665555556677777766544
No 54
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=98.49 E-value=0.01 Score=72.91 Aligned_cols=64 Identities=16% Similarity=0.214 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 553 QCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQ 616 (910)
Q Consensus 553 ~ei~~l~~~lee~~~ki~~le~e~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~e~~el~~ 616 (910)
..|..++.++..+..++..++..+...+..|+.+...+......+...++.++.+..++.+++.
T Consensus 661 ~~ie~le~e~~~l~~~~~~l~~~~~~~e~~l~e~~~~~~~l~~~~~q~~~~~~~~~~em~el~n 724 (1074)
T KOG0250|consen 661 DEIEDLEREASRLQKEILELENQRREAEKNLEELEKKLRELSEHIEQIKRRIRKKRAEMTELKN 724 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4456666666666666666666666666666666666666666666666666666666666655
No 55
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=98.44 E-value=0.014 Score=72.07 Aligned_cols=24 Identities=21% Similarity=0.069 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 741 LEDLLESERRSRAAANAMAERLSL 764 (910)
Q Consensus 741 Le~~le~e~~~~~ea~~r~e~l~~ 764 (910)
++..+..+...+.+++++.+.-..
T Consensus 791 ~Ekq~~~~~~~l~~~K~~~e~~~~ 814 (1317)
T KOG0612|consen 791 LEKQLKKLLDELAELKKQLEEENA 814 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444443333
No 56
>PRK04863 mukB cell division protein MukB; Provisional
Probab=98.34 E-value=0.038 Score=72.62 Aligned_cols=35 Identities=11% Similarity=0.246 Sum_probs=21.3
Q ss_pred HHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhhh
Q 002544 281 IQSMERKLRAACHSSDASIDNVVKVLDGLISEYET 315 (910)
Q Consensus 281 l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Y~~ 315 (910)
+..+..-|........++++..+..+..-+.+|.-
T Consensus 210 ~~~i~~fl~~yll~e~~~v~~~i~~m~~~l~~~r~ 244 (1486)
T PRK04863 210 SSAITRSLRDYLLPENSGVRKAFQDMEAALRENRM 244 (1486)
T ss_pred HHhHHHHHHHHcCCCChhhhHHHHHHHHHHHHHHH
Confidence 34456666665555555566666667777777764
No 57
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=98.30 E-value=0.018 Score=67.12 Aligned_cols=89 Identities=18% Similarity=0.276 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 694 EVNRIRESELEALSKVALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKL 773 (910)
Q Consensus 694 Ele~~~~~~~~~~~~~~elE~rl~e~eee~e~l~~r~~~qr~~~i~~Le~~le~e~~~~~ea~~r~e~l~~ql~~~k~~i 773 (910)
+++.++....++.....+.+-+++.+-.++-+||.+-.++--.-|++-.++|..-...=.++..-+..|-.+|..++..|
T Consensus 676 EveK~k~~a~EAvK~q~EtdlrCQhKIAeMVALMEKHK~qYDkiVEEkDaEL~~~k~KE~E~~s~k~sLE~ELs~lk~el 755 (786)
T PF05483_consen 676 EVEKAKLTADEAVKLQEETDLRCQHKIAEMVALMEKHKHQYDKIVEEKDAELGLYKKKEQEQSSHKASLELELSNLKNEL 755 (786)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 44444444455555556788888888888888887777877667888888887776666777777788888888999999
Q ss_pred HHHHHHHhh
Q 002544 774 DEMQQELTK 782 (910)
Q Consensus 774 ~~l~~e~~~ 782 (910)
..+..++..
T Consensus 756 ~slK~QLk~ 764 (786)
T PF05483_consen 756 SSLKKQLKT 764 (786)
T ss_pred HHHHHHHHH
Confidence 888877763
No 58
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=98.22 E-value=0.025 Score=65.68 Aligned_cols=91 Identities=26% Similarity=0.302 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 002544 398 LADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAR 477 (910)
Q Consensus 398 ~lee~~~~~~~l~~~~~~Le~e~~~L~~qle~~k~e~~~~kkk~Ee~~~e~~~~k~kl~~eleel~~~~ee~e~~~~~le 477 (910)
....+......++.+...++..+..|..-+.....++...+..|++.+....+.-.-+..+++..+.++..++..+..+.
T Consensus 183 ~e~~L~~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~ 262 (629)
T KOG0963|consen 183 REAGLKDEEQNLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLR 262 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455666666777777788888888888888888899999998877765555667788899999999999999999888
Q ss_pred HHHHHHHHHHH
Q 002544 478 EQALSAQEEVE 488 (910)
Q Consensus 478 ~~~~~~q~Ele 488 (910)
.++..+.+...
T Consensus 263 ~ql~~~N~~~~ 273 (629)
T KOG0963|consen 263 EQLAKANSSKK 273 (629)
T ss_pred HHHHhhhhhhh
Confidence 88776665555
No 59
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.21 E-value=0.027 Score=66.23 Aligned_cols=74 Identities=20% Similarity=0.310 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 535 AEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIME 608 (910)
Q Consensus 535 ~ele~ei~~~~~kl~~~e~ei~~l~~~lee~~~ki~~le~e~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le 608 (910)
.+-++++-.+..+..+++.++..|+..+..+..++...+-.+.....+|+.+..+.+.....+..+..+++++.
T Consensus 426 ~reqe~iv~~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q 499 (1118)
T KOG1029|consen 426 NREQEWIVYLNAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQ 499 (1118)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444445555555555555555555555555555555555555444444444444433333333
No 60
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.19 E-value=0.039 Score=66.71 Aligned_cols=157 Identities=18% Similarity=0.206 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHH
Q 002544 338 ILDLVKRLIDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKR---------YDDAINDKKKLADDYTSRINN 408 (910)
Q Consensus 338 il~~~~rl~~~~eke~~~L~~e~~~le~e~e~l~k~lee~e~~~~e~~k~---------le~~i~el~~~lee~~~~~~~ 408 (910)
+++-.+.-+.+.+.+++...-+..++..+-..+.+++..++....++..+ .++-=.=+..++..+.+.+++
T Consensus 329 ~l~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~~Kqgr~sqFssk~eRDkwir~ei~~l~~~i~~ 408 (1200)
T KOG0964|consen 329 VLQKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDLLAKQGRYSQFSSKEERDKWIRSEIEKLKRGIND 408 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccccccCcHHHHHHHHHHHHHHHHHHHhh
Confidence 34444455556666777777777777888888888888887765553321 111111223455555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 002544 409 LQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVE 488 (910)
Q Consensus 409 l~~~~~~Le~e~~~L~~qle~~k~e~~~~kkk~Ee~~~e~~~~k~kl~~eleel~~~~ee~e~~~~~le~~~~~~q~Ele 488 (910)
....-..++.++.++..++...-.++..+.. .+.+.+..-..+.+++..+++.++++..+...+++.=..+++.++
T Consensus 409 ~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~----si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~l~~~i~ 484 (1200)
T KOG0964|consen 409 TKEQENILQKEIEDLESELKEKLEEIKELES----SINETKGRMEEFDAENTELKRELDELQDKRKELWREEKKLRSLIA 484 (1200)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555533333332222 222222223445566677777777777777777776666777666
Q ss_pred HHHHHHHHHH
Q 002544 489 EWKRKYGVAV 498 (910)
Q Consensus 489 e~~~k~e~~~ 498 (910)
.++..+..+.
T Consensus 485 ~~~~dl~~~~ 494 (1200)
T KOG0964|consen 485 NLEEDLSRAE 494 (1200)
T ss_pred HHHHHHHHHH
Confidence 5555444443
No 61
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.15 E-value=0.046 Score=66.09 Aligned_cols=49 Identities=27% Similarity=0.302 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 002544 737 TVKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKLDEMQQELTKARL 785 (910)
Q Consensus 737 ~i~~Le~~le~e~~~~~ea~~r~e~l~~ql~~~k~~i~~l~~e~~~~~~ 785 (910)
.+....++++.+......+...+..+..++++.++.+.++...++..+.
T Consensus 848 el~~~~~el~~~~~~~e~~~~el~~l~~~i~~~~a~~~~~~~~lE~~~~ 896 (1200)
T KOG0964|consen 848 ELELEKSELESEEKRVEAAILELKTLQDSIDKKKAEIKEIKKELEKAKN 896 (1200)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555555555666666666555554443
No 62
>PHA02562 46 endonuclease subunit; Provisional
Probab=98.15 E-value=0.0024 Score=77.17 Aligned_cols=67 Identities=13% Similarity=0.234 Sum_probs=26.8
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 357 MLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSL 423 (910)
Q Consensus 357 ~~e~~~le~e~e~l~k~lee~e~~~~e~~k~le~~i~el~~~lee~~~~~~~l~~~~~~Le~e~~~L 423 (910)
+.++..+..++..+..++...+.....+.+.....+.+++.+++.+......+..++..++.++.++
T Consensus 180 ~~~i~~l~~~i~~l~~~i~~~~~~i~~~~~~~~~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l 246 (562)
T PHA02562 180 NQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNL 246 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444433333333332222223333444444444444444444444444444444333
No 63
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=98.14 E-value=0.05 Score=66.00 Aligned_cols=53 Identities=15% Similarity=0.241 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 385 LKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKY 441 (910)
Q Consensus 385 ~k~le~~i~el~~~lee~~~~~~~l~~~~~~Le~e~~~L~~qle~~k~e~~~~kkk~ 441 (910)
+..+..++.++..+++.+...+........++..- ..+++.+..+++.|-..|
T Consensus 200 ll~lr~eLddleae~~klrqe~~e~l~ea~ra~~y----rdeldalre~aer~d~~y 252 (1195)
T KOG4643|consen 200 LLRLRNELDDLEAEISKLRQEIEEFLDEAHRADRY----RDELDALREQAERPDTTY 252 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHHhhhcCCCcc
Confidence 44555566666555555555555555555554443 333444444444444444
No 64
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=98.14 E-value=1.8e-06 Score=106.59 Aligned_cols=32 Identities=25% Similarity=0.313 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002544 751 SRAAANAMAERLSLEVQSAQAKLDEMQQELTK 782 (910)
Q Consensus 751 ~~~ea~~r~e~l~~ql~~~k~~i~~l~~e~~~ 782 (910)
........+..|..++..++..+..++..++.
T Consensus 504 ~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~ 535 (722)
T PF05557_consen 504 ELNELQKEIEELERENERLRQELEELESELEK 535 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666666677777777777766664
No 65
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=98.09 E-value=0.091 Score=67.13 Aligned_cols=9 Identities=22% Similarity=0.534 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 002544 367 MKLLKKQLE 375 (910)
Q Consensus 367 ~e~l~k~le 375 (910)
++.+..+..
T Consensus 234 ~e~l~~~~~ 242 (908)
T COG0419 234 IEALEERLA 242 (908)
T ss_pred HHHHHHHHH
Confidence 333333333
No 66
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=98.08 E-value=0.0078 Score=59.96 Aligned_cols=154 Identities=23% Similarity=0.315 Sum_probs=98.5
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 456 CSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLA 535 (910)
Q Consensus 456 ~~eleel~~~~ee~e~~~~~le~~~~~~q~Elee~~~k~e~~~~~~k~~lek~~~~~e~~~~e~q~~~~~~~~E~~~~~~ 535 (910)
.+.+..+..+....+++...++.++..++.=.++.-+||+..+. ....++..++....
T Consensus 45 er~~Kv~enr~~kdEE~~e~~e~qLkEAk~iaE~adrK~eEVar--------kL~iiE~dLE~~ee-------------- 102 (205)
T KOG1003|consen 45 ERGMKVIENRAQKLEEKMEAQEAQLKEAKHIAEKADRKYEEVAR--------KLVIIEGELERAEE-------------- 102 (205)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHhHHHHHHH--------------
Confidence 35566777888888888888999999888888888889988542 22333322222211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 536 EKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLE 615 (910)
Q Consensus 536 ele~ei~~~~~kl~~~e~ei~~l~~~lee~~~ki~~le~e~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~e~~el~ 615 (910)
.......++.++..++..+.+.+..+...-..+......+..+|..+...+..+.......++.+..|+.++..|+
T Consensus 103 ----raE~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE~rAE~aERsVakLeke~DdlE 178 (205)
T KOG1003|consen 103 ----RAEAAESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKLKEAETRAEFAERRVAKLEKERDDLE 178 (205)
T ss_pred ----HHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcccHHHHH
Confidence 1111233333444444445555555555555555566666666777777777777777777788888888888887
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 002544 616 QKYKSEFERFEEVQERCKVA 635 (910)
Q Consensus 616 ~~l~e~~~~~eE~e~~l~~~ 635 (910)
..+.....++..+...|..+
T Consensus 179 ~kl~~~k~ky~~~~~eLD~~ 198 (205)
T KOG1003|consen 179 EKLEEAKEKYEEAKKELDET 198 (205)
T ss_pred HhhHHHHHHHHHHHHHHHHH
Confidence 77666666666666655554
No 67
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.04 E-value=0.062 Score=63.30 Aligned_cols=78 Identities=18% Similarity=0.251 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 534 LAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDK 611 (910)
Q Consensus 534 ~~ele~ei~~~~~kl~~~e~ei~~l~~~lee~~~ki~~le~e~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~e~ 611 (910)
++.+...+..+..++-..+..+...+..+++....++....++..|+.+|.++...+..+.-+.+.|..+++....-.
T Consensus 446 letLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q~a~ 523 (1118)
T KOG1029|consen 446 LETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQKQSAH 523 (1118)
T ss_pred HHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhc
Confidence 344445555555566556666677777777777777777777777777777777777666666666665555444433
No 68
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=98.03 E-value=1e-06 Score=108.40 Aligned_cols=22 Identities=5% Similarity=0.057 Sum_probs=9.2
Q ss_pred HHHHHHHHHHH-HHHHHhhcccC
Q 002544 192 EAECRRAYDSA-TETYMSTFDRS 213 (910)
Q Consensus 192 ~~e~~~a~~~A-~~~Y~~~m~~~ 213 (910)
...|...+-.+ ..+|...+...
T Consensus 68 r~~NLk~l~~~i~~yy~e~L~~~ 90 (713)
T PF05622_consen 68 RVSNLKKLLRNIKSYYQEELGQQ 90 (713)
T ss_dssp HHHHHHHHHHHHHHHHHTTT---
T ss_pred HHHHHHHHHHHHHHHHHHHcCCC
Confidence 44444444444 44455555553
No 69
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=98.02 E-value=0.081 Score=63.99 Aligned_cols=113 Identities=19% Similarity=0.209 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 347 DQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKT 426 (910)
Q Consensus 347 ~~~eke~~~L~~e~~~le~e~e~l~k~lee~e~~~~e~~k~le~~i~el~~~lee~~~~~~~l~~~~~~Le~e~~~L~~q 426 (910)
...+.+++.++..+....++.+.+.....++... ...++.+...++..+.++.-.-..+-...+.|+.++-.|.++
T Consensus 37 ~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~----~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQKq 112 (717)
T PF09730_consen 37 LELENELKQLRQELSNVQAENERLSQLNQELRKE----CEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQKQ 112 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 4567778888888888888888888887777665 567788888888888888888888889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 002544 427 VDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEA 471 (910)
Q Consensus 427 le~~k~e~~~~kkk~Ee~~~e~~~~k~kl~~eleel~~~~ee~e~ 471 (910)
++.+++.--+ || .++...+.+..+++-|+.+++++..
T Consensus 113 vs~Lk~sQve----fE----~~Khei~rl~Ee~~~l~~qlee~~r 149 (717)
T PF09730_consen 113 VSVLKQSQVE----FE----GLKHEIKRLEEEIELLNSQLEEAAR 149 (717)
T ss_pred HHHHHHhHHH----HH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9988753211 22 1333355566666666666666655
No 70
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.98 E-value=0.0088 Score=72.74 Aligned_cols=92 Identities=14% Similarity=0.237 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 415 SLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKY 494 (910)
Q Consensus 415 ~Le~e~~~L~~qle~~k~e~~~~kkk~Ee~~~e~~~~k~kl~~eleel~~~~ee~e~~~~~le~~~~~~q~Elee~~~k~ 494 (910)
.|+.++..|..+|...++.=.+++.++.... .....+..+|..++...+.++.++..|..++..=.+.+..+-++|
T Consensus 422 rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~----~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL 497 (697)
T PF09726_consen 422 RLEADVKKLRAELQSSRQSEQELRSQISSLT----NNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRL 497 (697)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHhhcc----ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555544444444444422111 113345667777777777777777777777776666666666666
Q ss_pred HHHHHHHHHHHHHHHHH
Q 002544 495 GVAVREAKAALEKAAIV 511 (910)
Q Consensus 495 e~~~~~~k~~lek~~~~ 511 (910)
-++ .+.|+.+|++...
T Consensus 498 ~eE-~~~R~~lEkQL~e 513 (697)
T PF09726_consen 498 AEE-RRQRASLEKQLQE 513 (697)
T ss_pred HHH-HHHHHHHHHHHHH
Confidence 663 3566666655543
No 71
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.97 E-value=0.025 Score=67.12 Aligned_cols=14 Identities=21% Similarity=0.287 Sum_probs=7.5
Q ss_pred hCCCCceeeccCCC
Q 002544 100 LFPDRECFTLVRPL 113 (910)
Q Consensus 100 ~F~~~~cf~l~~P~ 113 (910)
+|.+...+-.|.|.
T Consensus 354 ~F~~v~~p~~~~Pr 367 (970)
T KOG0946|consen 354 EFADVTAPSIPNPR 367 (970)
T ss_pred HHhhccCCCCCCCc
Confidence 45555555555443
No 72
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.95 E-value=0.11 Score=63.29 Aligned_cols=131 Identities=18% Similarity=0.178 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 002544 631 RCKVAEKEAKKATELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSKVA 710 (910)
Q Consensus 631 ~l~~~e~e~~~~~~~~e~l~~e~~~~~~e~~e~~r~~~e~~~~ie~~~~~ie~Le~e~~~Le~Ele~~~~~~~~~~~~~~ 710 (910)
+++....++......++.+..+.+.+..++...+..+......++.+...+..+...+...+.+...+...+.+...+..
T Consensus 802 ~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~ 881 (1174)
T KOG0933|consen 802 RAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQR 881 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHH
Confidence 33333333333344444444455555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 711 LLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERRSRAAANAMAERL 762 (910)
Q Consensus 711 elE~rl~e~eee~e~l~~r~~~qr~~~i~~Le~~le~e~~~~~ea~~r~e~l 762 (910)
....++..+....+.. .+........++.|...+.......+.+..+++.+
T Consensus 882 ~~dt~i~~~~~~~e~~-~~e~~~~~l~~kkle~e~~~~~~e~~~~~k~v~~l 932 (1174)
T KOG0933|consen 882 DIDTEISGLLTSQEKC-LSEKSDGELERKKLEHEVTKLESEKANARKEVEKL 932 (1174)
T ss_pred hhhHHHhhhhhHHHHH-HHHhhcccchHHHHHhHHHHhhhhHHHHHHHHHHH
Confidence 5555555555555555 34444444566777777777666666666666663
No 73
>PRK11637 AmiB activator; Provisional
Probab=97.93 E-value=0.014 Score=67.89 Aligned_cols=70 Identities=14% Similarity=0.199 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 545 ATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYL 614 (910)
Q Consensus 545 ~~kl~~~e~ei~~l~~~lee~~~ki~~le~e~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~e~~el 614 (910)
+.++.....++..++..+..+...+..+...+..+..+|..+..++......+..++.++..++.++...
T Consensus 53 ~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~ 122 (428)
T PRK11637 53 QQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQ 122 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333343334444444444444444433333333333333333333333333333
No 74
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.93 E-value=0.012 Score=71.56 Aligned_cols=86 Identities=15% Similarity=0.237 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 536 EKEEEMKEKATKIEHAEQCLTTLRLEL-------KAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIME 608 (910)
Q Consensus 536 ele~ei~~~~~kl~~~e~ei~~l~~~l-------ee~~~ki~~le~e~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le 608 (910)
.++.+++.++.++....+-=.+|+..+ ..+...+..+..+...|+..+..|......-...+..+|++++...
T Consensus 422 rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~ 501 (697)
T PF09726_consen 422 RLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEER 501 (697)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555554443333333333332 2333345555555555555555555555555555566666655555
Q ss_pred HHHHHHHHHHHHH
Q 002544 609 QDKVYLEQKYKSE 621 (910)
Q Consensus 609 ~e~~el~~~l~e~ 621 (910)
..+..++.++.++
T Consensus 502 ~~R~~lEkQL~eE 514 (697)
T PF09726_consen 502 RQRASLEKQLQEE 514 (697)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555554333
No 75
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=97.93 E-value=0.088 Score=61.32 Aligned_cols=243 Identities=14% Similarity=0.164 Sum_probs=126.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 534 LAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVE----ISSQKLETKELSEKLEAVNAKAQSFEREARIMEQ 609 (910)
Q Consensus 534 ~~ele~ei~~~~~kl~~~e~ei~~l~~~lee~~~ki~~le~e----~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~ 609 (910)
...+..+-...+.++..++..+..++..++.....+..+... ......++.-+...++.++..+..+++++..|..
T Consensus 184 e~~L~~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ 263 (629)
T KOG0963|consen 184 EAGLKDEEQNLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLRE 263 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444455555555566666666666666555554444 6677777888888888888888888888877777
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 610 DKVYLEQKYKSEF-ERFEEVQERCKVAEKEAKKATELADRE----RAEAAAARKGKSEFENLAMERMAVIERVQRQIESL 684 (910)
Q Consensus 610 e~~el~~~l~e~~-~~~eE~e~~l~~~e~e~~~~~~~~e~l----~~e~~~~~~e~~e~~r~~~e~~~~ie~~~~~ie~L 684 (910)
++........-.. ..++.....+...+.++.++...+... ..+++.....++.+. .++......++.+
T Consensus 264 ql~~~N~~~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e~~~~qI~~le-------~~l~~~~~~leel 336 (629)
T KOG0963|consen 264 QLAKANSSKKLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEASLVEEREKHKAQISALE-------KELKAKISELEEL 336 (629)
T ss_pred HHHhhhhhhhhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Confidence 7765544321110 011111112222222222221111111 111111122222222 2222222222222
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHH-HH--HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 685 ERQKTDLTNEVNRIRESELEALSK-VA--LLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERRSRAAANAMAER 761 (910)
Q Consensus 685 e~e~~~Le~Ele~~~~~~~~~~~~-~~--elE~rl~e~eee~e~l~~r~~~qr~~~i~~Le~~le~e~~~~~ea~~r~e~ 761 (910)
...+..- .+++.++.++.-+..- +. +-...-.+-..-++.+|-.++.....++-.|...+......++++..+.+.
T Consensus 337 ~~kL~~~-sDYeeIK~ELsiLk~ief~~se~a~~~~~~~~~leslLl~knr~lq~e~a~Lr~~n~~~~~~~~~~~~~~~e 415 (629)
T KOG0963|consen 337 KEKLNSR-SDYEEIKKELSILKAIEFGDSEEANDEDETAKTLESLLLEKNRKLQNENASLRVANSGLSGRITELSKKGEE 415 (629)
T ss_pred HHHHhhh-ccHHHHHHHHHHHHHhhcCCcccccccccccchHHHHHHHHHhhhhHHHHHHhccccccchhHHHHHhhhhh
Confidence 2221111 3455555444332221 00 000000022245666666777777778888888888888888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Q 002544 762 LSLEVQSAQAKLDEMQQELTKAR 784 (910)
Q Consensus 762 l~~ql~~~k~~i~~l~~e~~~~~ 784 (910)
+.......+.-|..+++.+..+.
T Consensus 416 l~~~~~~~ke~i~klE~dl~~~~ 438 (629)
T KOG0963|consen 416 LEAKATEQKELIAKLEQDLLKVQ 438 (629)
T ss_pred hHHHHHHHHHHHHHHHhhHhhcc
Confidence 98888888888888777777655
No 76
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=97.91 E-value=0.093 Score=61.11 Aligned_cols=41 Identities=17% Similarity=0.080 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002544 741 LEDLLESERRSRAAANAMAERLSLEVQSAQAKLDEMQQELT 781 (910)
Q Consensus 741 Le~~le~e~~~~~ea~~r~e~l~~ql~~~k~~i~~l~~e~~ 781 (910)
|.++....+..+..+..|.-.+..++..+|..++.+++...
T Consensus 709 lraE~~~l~~~le~e~nr~~~~~~e~~~~qeE~~~l~~r~~ 749 (961)
T KOG4673|consen 709 LRAEQGQLSKSLEKERNRAAENRQEYLAAQEEADTLEGRAN 749 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444555555555555555555554443
No 77
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=97.91 E-value=0.051 Score=57.95 Aligned_cols=98 Identities=12% Similarity=0.136 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 553 QCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERC 632 (910)
Q Consensus 553 ~ei~~l~~~lee~~~ki~~le~e~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~e~~el~~~l~e~~~~~eE~e~~l 632 (910)
..++.+....+-+..++...+.....|+.++......+.+..-.+..+.+.+.....++.+++..+..+..++...-...
T Consensus 137 ~d~S~lkd~ne~LsQqLskaesK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kq 216 (305)
T PF14915_consen 137 SDVSNLKDNNEILSQQLSKAESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQ 216 (305)
T ss_pred chHHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 34556666666666677777777777777777777777777777888888888888888888888888777777776666
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 002544 633 KVAEKEAKKATELADRER 650 (910)
Q Consensus 633 ~~~e~e~~~~~~~~e~l~ 650 (910)
+.++..+..+...-.-++
T Consensus 217 es~eERL~QlqsEN~LLr 234 (305)
T PF14915_consen 217 ESLEERLSQLQSENMLLR 234 (305)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666555555444433333
No 78
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=97.89 E-value=0.057 Score=64.58 Aligned_cols=54 Identities=13% Similarity=0.189 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 575 EISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEV 628 (910)
Q Consensus 575 e~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~e~~el~~~l~e~~~~~eE~ 628 (910)
.+......|-++...+..-...|...-...+.++.+++.+..++..-....+++
T Consensus 485 ~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~gkL~RtF~v~dEl 538 (594)
T PF05667_consen 485 NRSAYTRRILEIVKNIRKQKEEIEKILSDTRELQKEINSLTGKLDRTFTVTDEL 538 (594)
T ss_pred CHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 366777788888888888888888888888888888888877765555544444
No 79
>PRK11637 AmiB activator; Provisional
Probab=97.88 E-value=0.022 Score=66.29 Aligned_cols=78 Identities=15% Similarity=0.256 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 534 LAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDK 611 (910)
Q Consensus 534 ~~ele~ei~~~~~kl~~~e~ei~~l~~~lee~~~ki~~le~e~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~e~ 611 (910)
+..+..++.....++.....++..+..++..+..++..+...+..++.+|..+..++......+..++..+......+
T Consensus 49 l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l 126 (428)
T PRK11637 49 LKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLL 126 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333334444444444444444444444444444444444444444444444444443333
No 80
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=97.87 E-value=0.13 Score=61.77 Aligned_cols=14 Identities=29% Similarity=0.192 Sum_probs=8.1
Q ss_pred hhHHHHHHHHHhcC
Q 002544 869 FTVQKLKQELTKHN 882 (910)
Q Consensus 869 ~~~~~~~~~~~~~~ 882 (910)
=|++.+=|-|.+..
T Consensus 573 pTAqqImqLL~eiQ 586 (617)
T PF15070_consen 573 PTAQQIMQLLQEIQ 586 (617)
T ss_pred chHHHHHHHhHhcC
Confidence 46666666555543
No 81
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.84 E-value=0.11 Score=59.95 Aligned_cols=209 Identities=15% Similarity=0.172 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHH
Q 002544 387 RYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQ------VLTKQKAMEDQVCSEIE 460 (910)
Q Consensus 387 ~le~~i~el~~~lee~~~~~~~l~~~~~~Le~e~~~L~~qle~~k~e~~~~kkk~Ee------~~~e~~~~k~kl~~ele 460 (910)
.++.-++-.+.-+.+.........+.+..+..++.....+++.++.+...++...+. .++.+...+.++.+.+.
T Consensus 270 ~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~ 349 (581)
T KOG0995|consen 270 RLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELN 349 (581)
T ss_pred HHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 344444444444445555555555566666666666666666666666666655542 22344444555555555
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 461 VLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAA-LEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEE 539 (910)
Q Consensus 461 el~~~~ee~e~~~~~le~~~~~~q~Elee~~~k~e~~~~~~k~~-lek~~~~~e~~~~e~q~~~~~~~~E~~~~~~ele~ 539 (910)
.+...++.+...+-.+.-.....-.+++..-.+|.....+.+.. .+.... +...-.......-.+.+-+ .--+..
T Consensus 350 ~i~~~~d~l~k~vw~~~l~~~~~f~~le~~~~~~~~l~~~i~l~~~~~~~n-~~~~pe~~~~~~~d~k~~V---~~~l~e 425 (581)
T KOG0995|consen 350 KIQSELDRLSKEVWELKLEIEDFFKELEKKFIDLNSLIRRIKLGIAENSKN-LERNPERAATNGVDLKSYV---KPLLKE 425 (581)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCcCCccCccccccchhHh---HHHHHH
Confidence 55555555544433333222222222222222333322221111 000000 0000000000000000111 111223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 540 EMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQS 599 (910)
Q Consensus 540 ei~~~~~kl~~~e~ei~~l~~~lee~~~ki~~le~e~~~L~~el~dL~~~le~~~~~~~~ 599 (910)
.+......+-+.+.+...++..+......|.+.......++.++..+.+..........+
T Consensus 426 l~~ei~~~~~~~~~~~~tLq~~~~~~~~~i~E~~~~l~~~~~el~~~~~~~~~~k~e~ee 485 (581)
T KOG0995|consen 426 LLDEISEELHEAENELETLQEHFSNKASTIEEKIQILGEIELELKKAESKYELKKEEAEE 485 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444555556666666666666666666666666666666665555444433
No 82
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=97.83 E-value=3.3e-05 Score=95.53 Aligned_cols=69 Identities=28% Similarity=0.396 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 552 EQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKS 620 (910)
Q Consensus 552 e~ei~~l~~~lee~~~ki~~le~e~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~e~~el~~~l~e 620 (910)
..++..+...+..+...+..++.++..+..++..+...+......++.++++.--+..++..|+.++.+
T Consensus 356 ~ek~g~~~~~~~~l~~~~~~Le~e~~~l~~~~~~l~~~~~~~~~~~~RLerq~~L~~kE~d~LR~~L~s 424 (722)
T PF05557_consen 356 TEKLGSLQSELRELEEEIQELEQEKEQLLKEIEELEASLEALKKLIRRLERQKALATKERDYLRAQLKS 424 (722)
T ss_dssp ---------------------------------------------------------------------
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555555556666666666656666666666666666666666666544
No 83
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.80 E-value=0.15 Score=60.19 Aligned_cols=121 Identities=22% Similarity=0.242 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 002544 669 ERMAVIERVQRQIESLERQKTDLTNEVNRIRESELE-------ALSKVALLEARVEEREKEIESLLESNNEQRASTVKKL 741 (910)
Q Consensus 669 e~~~~ie~~~~~ie~Le~e~~~Le~Ele~~~~~~~~-------~~~~~~elE~rl~e~eee~e~l~~r~~~qr~~~i~~L 741 (910)
+....|.......+.++..+.+|..++.+....+.- +...+..+.+++..++++-..+ + .+. ..+.|
T Consensus 458 ~~~~~i~~~k~~~e~le~~~kdL~s~L~~~~q~l~~qr~e~~~~~e~i~~~~ke~~~Le~En~rL--r--~~~--e~~~l 531 (716)
T KOG4593|consen 458 ELYREITGQKKRLEKLEHELKDLQSQLSSREQSLLFQREESELLREKIEQYLKELELLEEENDRL--R--AQL--ERRLL 531 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH--H--HHH--HHHHH
Confidence 344444444444445555555555555444443322 2222345555555555555555 3 121 22333
Q ss_pred HHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhhhhcchhh
Q 002544 742 EDLLES------------ERRSRAAANAMAERLSLEVQSAQAKLDEMQQELTKARLNETALGSKLR 795 (910)
Q Consensus 742 e~~le~------------e~~~~~ea~~r~e~l~~ql~~~k~~i~~l~~e~~~~~~~~~~~~~~~~ 795 (910)
+...++ ..+.+.....+.+.|++++..++..+..+.+.-..++--++|-+|=+-
T Consensus 532 ~gd~~~~~~rVl~~~~npt~~~~~~~k~~~e~LqaE~~~lk~~l~~le~~~~~~~d~~i~~~s~~~ 597 (716)
T KOG4593|consen 532 QGDYEENITRVLHMSTNPTSKARQIKKNRLEELQAELERLKERLTALEGDKMQFRDGEIAVHSLLA 597 (716)
T ss_pred hhhhhhhccceeeecCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccchhhHHhhhhc
Confidence 332222 234666778888999999999999999999988888888887766443
No 84
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.79 E-value=0.18 Score=60.54 Aligned_cols=78 Identities=18% Similarity=0.163 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 540 EMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQK 617 (910)
Q Consensus 540 ei~~~~~kl~~~e~ei~~l~~~lee~~~ki~~le~e~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~e~~el~~~ 617 (910)
++....+.++..+..+..+-.++.+.+.+.-.+-.++.........|...+......+..+......+...+..++++
T Consensus 455 e~~t~gsA~ed~Qeqn~kL~~el~ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq 532 (698)
T KOG0978|consen 455 EMETIGSAFEDMQEQNQKLLQELREKDDKNFKLMSERIKANQKHKLLREEKSKLEEQILTLKASVDKLELKIGKLEEQ 532 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444445555555555555555555444444444444444444444444444444444444444444444443
No 85
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.75 E-value=0.19 Score=59.94 Aligned_cols=42 Identities=12% Similarity=0.137 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 400 DDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKY 441 (910)
Q Consensus 400 ee~~~~~~~l~~~~~~Le~e~~~L~~qle~~k~e~~~~kkk~ 441 (910)
+++.+....+-..+.+++...+.+......++.+.++...++
T Consensus 653 e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~v 694 (970)
T KOG0946|consen 653 EELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEV 694 (970)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444444444444444433333333333333
No 86
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=97.74 E-value=0.075 Score=54.84 Aligned_cols=139 Identities=19% Similarity=0.218 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 348 QIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTV 427 (910)
Q Consensus 348 ~~eke~~~L~~e~~~le~e~e~l~k~lee~e~~~~e~~k~le~~i~el~~~lee~~~~~~~l~~~~~~Le~e~~~L~~ql 427 (910)
..+.+...+...+..+......+...+++.+..+++.+...+.........+.........+...+++++.-.++|.+..
T Consensus 20 ~~E~e~~~l~~k~~e~~~~~~~m~~i~~e~Ek~i~~~i~e~~~~~~~~~~~i~~~~~erdq~~~dL~s~E~sfsdl~~ry 99 (207)
T PF05010_consen 20 EKEEEEQELKKKYEELHKENQEMRKIMEEYEKTIAQMIEEKQKQKELSEAEIQKLLKERDQAYADLNSLEKSFSDLHKRY 99 (207)
T ss_pred HhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHH
Confidence 33455667777777777777777777777777655555444444333345555555666666666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Q 002544 428 DSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAA----REQALSAQEEVEEWKRKYGVA 497 (910)
Q Consensus 428 e~~k~e~~~~kkk~Ee~~~e~~~~k~kl~~eleel~~~~ee~e~~~~~l----e~~~~~~q~Elee~~~k~e~~ 497 (910)
+..+.-+..+++--+ .|..-+.+...++...+.++..+ ++.+..+..+++.++.++...
T Consensus 100 ek~K~vi~~~k~NEE-----------~Lkk~~~ey~~~l~~~eqry~aLK~hAeekL~~ANeei~~v~~~~~~e 162 (207)
T PF05010_consen 100 EKQKEVIEGYKKNEE-----------TLKKCIEEYEERLKKEEQRYQALKAHAEEKLEKANEEIAQVRSKHQAE 162 (207)
T ss_pred HHHHHHHHHHHHhHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 666666666554322 22333444444444444444433 455555555555555555443
No 87
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=97.73 E-value=0.22 Score=59.93 Aligned_cols=56 Identities=11% Similarity=0.162 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 349 IGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINN 408 (910)
Q Consensus 349 ~eke~~~L~~e~~~le~e~e~l~k~lee~e~~~~e~~k~le~~i~el~~~lee~~~~~~~ 408 (910)
+...+..+...+..++.++..+...+..+... .......+.++.....++.+.+..
T Consensus 99 a~~~i~~~~~~l~~~e~~i~~i~~~l~~L~~~----e~~nr~~i~~l~~~y~~lrk~ll~ 154 (560)
T PF06160_consen 99 AKQAIKEIEEQLDEIEEDIKEILDELDELLES----EEKNREEIEELKEKYRELRKELLA 154 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555556666666666555555555443 334455555555555554444443
No 88
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.68 E-value=0.2 Score=58.06 Aligned_cols=31 Identities=13% Similarity=0.244 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 002544 349 IGSERSSLMLKYRSIEDNMKLLKKQLEDSER 379 (910)
Q Consensus 349 ~eke~~~L~~e~~~le~e~e~l~k~lee~e~ 379 (910)
..+.++.+..+|...+.+++.+++...++..
T Consensus 292 ~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~ 322 (581)
T KOG0995|consen 292 MEKKLEMLKSEIEEKEEEIEKLQKENDELKK 322 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555444433
No 89
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=97.65 E-value=0.41 Score=60.83 Aligned_cols=42 Identities=17% Similarity=0.222 Sum_probs=26.5
Q ss_pred CCCcchHHHHHHHHHHHHHhhhcc--CCCCh--HHHHHHHHhHhhh
Q 002544 294 SSDASIDNVVKVLDGLISEYETSC--HGPGK--WQKLATFLQQSSE 335 (910)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~Y~~~~--~gp~k--~~~l~~fl~~~~~ 335 (910)
...|.++.|...+..+..+|...- .+|.. ...+..|+.....
T Consensus 628 ~~sgt~~~~~~~le~l~~eie~~rk~l~~lq~~s~~Y~k~Ie~~~~ 673 (1294)
T KOG0962|consen 628 DESGTIDEYLDLLERLKGEIEKARKDLAMLQGRSALYRKFIEIACR 673 (1294)
T ss_pred hhccchhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhh
Confidence 344667788888888888877542 33433 3556777776443
No 90
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=97.64 E-value=0.16 Score=56.08 Aligned_cols=26 Identities=4% Similarity=0.152 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHH
Q 002544 451 MEDQVCSEIEVLKSRSTAAEARLAAA 476 (910)
Q Consensus 451 ~k~kl~~eleel~~~~ee~e~~~~~l 476 (910)
...+++.-|.++..++++-......+
T Consensus 108 l~~kFq~~L~dIq~~~ee~~~~~~k~ 133 (309)
T PF09728_consen 108 LSEKFQATLKDIQAQMEEQSERNIKL 133 (309)
T ss_pred HHHHHHHHHHHHHHHHHhccchhHHH
Confidence 34455555555555555544444433
No 91
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=97.64 E-value=0.19 Score=56.75 Aligned_cols=72 Identities=17% Similarity=0.255 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 540 EMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDK 611 (910)
Q Consensus 540 ei~~~~~kl~~~e~ei~~l~~~lee~~~ki~~le~e~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~e~ 611 (910)
++...+.++...+.+|.........++..|.+++.++..+..++......+...+..+..++..+..|+.+.
T Consensus 39 ~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~ 110 (420)
T COG4942 39 QLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQE 110 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 344444455544445555555555555555555555555555555555555555555555555555555444
No 92
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.62 E-value=0.31 Score=58.55 Aligned_cols=68 Identities=24% Similarity=0.216 Sum_probs=27.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 002544 681 IESLERQKTDLTNEVNRIRESELEALSKVALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESER 749 (910)
Q Consensus 681 ie~Le~e~~~Le~Ele~~~~~~~~~~~~~~elE~rl~e~eee~e~l~~r~~~qr~~~i~~Le~~le~e~ 749 (910)
...+......+..++......+........++...+..+....+.. ....+++...+..++.+++-+.
T Consensus 533 ~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~-~~~le~i~~~~~e~~~ele~~~ 600 (698)
T KOG0978|consen 533 ERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKS-EAKLEQIQEQYAELELELEIEK 600 (698)
T ss_pred HHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333444333333333333444444444444444444 3334444444444444444333
No 93
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=97.61 E-value=0.096 Score=52.43 Aligned_cols=142 Identities=20% Similarity=0.245 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 002544 597 AQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAARKGKSEFENLAMERMAVIER 676 (910)
Q Consensus 597 ~~~lEk~~~~Le~e~~el~~~l~e~~~~~eE~e~~l~~~e~e~~~~~~~~e~l~~e~~~~~~e~~e~~r~~~e~~~~ie~ 676 (910)
...++.+...++.++.+.+..-.....++++....|.-++.++.++.++.+.....+..+..+.+-+...+..+.
T Consensus 55 ~~kdEE~~e~~e~qLkEAk~iaE~adrK~eEVarkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l~----- 129 (205)
T KOG1003|consen 55 AQKLEEKMEAQEAQLKEAKHIAEKADRKYEEVARKLVIIEGELERAEERAEAAESQSEELEEDLRILDSNLKSLS----- 129 (205)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHH-----
Confidence 333444444444445555444444555566666666666665555544443333332222222222222211111
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 002544 677 VQRQIESLERQKTDLTNEVNRIRESELEALSKVALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLE 746 (910)
Q Consensus 677 ~~~~ie~Le~e~~~Le~Ele~~~~~~~~~~~~~~elE~rl~e~eee~e~l~~r~~~qr~~~i~~Le~~le 746 (910)
..-+.+..........+.-+...+.++..+..-.+++++.++..++++ ..++...+.....+...|+
T Consensus 130 --~~ee~~~q~~d~~e~~ik~ltdKLkEaE~rAE~aERsVakLeke~Ddl-E~kl~~~k~ky~~~~~eLD 196 (205)
T KOG1003|consen 130 --AKEEKLEQKEEKYEEELKELTDKLKEAETRAEFAERRVAKLEKERDDL-EEKLEEAKEKYEEAKKELD 196 (205)
T ss_pred --HHHHHHhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcccHHHH-HHhhHHHHHHHHHHHHHHH
Confidence 111122222222222333333333333333344455555555555555 4444444444444444444
No 94
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=97.60 E-value=0.38 Score=59.21 Aligned_cols=80 Identities=8% Similarity=0.122 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 002544 392 INDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEA 471 (910)
Q Consensus 392 i~el~~~lee~~~~~~~l~~~~~~Le~e~~~L~~qle~~k~e~~~~kkk~Ee~~~e~~~~k~kl~~eleel~~~~ee~e~ 471 (910)
...+..+++++...+..+..+...+..+...+..+++.+..++......+...-......+..+..++..+..++.+...
T Consensus 204 ~~~~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~~GG~~~~~r~~Le~ei~~le~e~~e~~~ 283 (650)
T TIGR03185 204 PSSILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGGDLFEEREQLERQLKEIEAARKANRA 283 (650)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444566666666666666666666666666666666666665555544432222222233444444444444443333
No 95
>PF05879 RHD3: Root hair defective 3 GTP-binding protein (RHD3); InterPro: IPR008803 This family consists of several eukaryotic root hair defective 3 like GTP-binding proteins. It has been speculated that the RHD3 protein is a member of a novel class of GTP-binding proteins that is widespread in eukaryotes and required for regulated cell enlargement []. The family also contains the homologous Saccharomyces cerevisiae synthetic construct enhancement of YOP1 (SEY1) protein which is involved in membrane trafficking [].; GO: 0016817 hydrolase activity, acting on acid anhydrides
Probab=97.60 E-value=0.012 Score=72.52 Aligned_cols=233 Identities=16% Similarity=0.205 Sum_probs=149.8
Q ss_pred CCCceEEEeeccccccccccccCCchHHHHHhhcC----------CCCCChhhhhhhHHHHHHHhhCCCCceeeccCCCC
Q 002544 45 FSPIFVWLLRDFYLDLVEDNRKITPRDYLEIALRP----------VQGSGRDIAAKNEIRDSIRALFPDRECFTLVRPLS 114 (910)
Q Consensus 45 ~fP~f~WlvRDf~l~l~~~g~~it~~eyLe~~L~~----------~~g~~~~~~~~n~~R~~i~~~F~~~~cf~l~~P~~ 114 (910)
+-+.++||||||+- .||-+.|+..|.. .|...+ | ..|..|| +..-++|||...
T Consensus 123 ~k~~llfviRD~~~--------~tp~e~l~~~l~~dl~~iW~~i~kP~~~~-----~---~~~~d~F-d~~f~~LpH~~~ 185 (742)
T PF05879_consen 123 RKTLLLFVIRDHTG--------VTPLENLEETLREDLEKIWDSISKPEGFE-----N---SSLSDFF-DLEFTALPHKIL 185 (742)
T ss_pred CCceEEEEEeeCCC--------CCcHHHHHHHHHHHHHHHHHhccCccccc-----C---CChhhee-eeeeeccCchhh
Confidence 44679999999972 3676777665531 111100 1 2366777 677778887764
Q ss_pred ChhhhccccCCCcCCCcHHHHHHHHHHHHHHhcc-------CCCcccCCcccChHHHHHHHHHHHHHhcCCCCCCccchH
Q 002544 115 NENELQRLDQISLDRLRPEFRAGLDALTKFVFER-------TRPKQVGATVLTGPVLIGITESYLDAINNGAVPTISSSW 187 (910)
Q Consensus 115 ~~~~l~~l~~~~~~~L~~eF~~~~~~l~~~i~~~-------~~pK~i~G~~ltg~~l~~l~~~yv~ain~g~vP~i~sa~ 187 (910)
.. ..|.+++..|....... .+|. -.+.|.+-+|..|++..=+.|.++.=-.|++-=
T Consensus 186 ~~---------------e~F~~~v~~Lr~rf~~~~~~~~~~~~~~--y~~~iP~dG~~~y~~~iW~~I~~nkDLDLPtqq 248 (742)
T PF05879_consen 186 QP---------------EKFNEDVAKLRQRFVDSKNIEDGLFKPE--YHRRIPADGFSMYAENIWEQIKNNKDLDLPTQQ 248 (742)
T ss_pred hH---------------HHHHHHHHHHHHHHhccCcCCCCCCchh--hcCCCChHHhHHHHHHHHHHHHhCccCCCCcHH
Confidence 42 47999999999877765 2222 234577778999999999999987544666777
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccC-----------CCCChHHHHHHHHHHHHHHHHHhhcccC-CChhhhHHHHHHHH
Q 002544 188 QSVEEAECRRAYDSATETYMSTFDRS-----------KPPEEVALGEAHEAAVQKALAVYNAGAV-GVGLARKKYEGLLQ 255 (910)
Q Consensus 188 ~~~~~~e~~~a~~~A~~~Y~~~m~~~-----------~~~~e~~L~~~H~~~~~~Al~~F~~~~~-g~~~~~~~~~~~L~ 255 (910)
..+|.-.|..+..+++..+...+... ..+.-..|-..-......|+.-|+..+- -...++...+..|.
T Consensus 249 ~mlA~fRCdEI~~e~l~~f~~~~~~~~~~~~~l~~~~~~~~~~~fg~~~~~l~~~~L~~YD~~AsrY~~~V~~~Kr~eL~ 328 (742)
T PF05879_consen 249 EMLAQFRCDEIANEVLEEFDEDIKELIEKWSELEEAVQGGVVEDFGKKLKSLRDKALEEYDEEASRYHKSVYQEKRQELE 328 (742)
T ss_pred HHHHHHhHHHHHHHHHHHHHHhhhhhhhhhhhhhhhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 89999999999999999998875431 1123357777778888899999987532 23456666667777
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchHHH-HHHHHHHHHHhhhc
Q 002544 256 KFFRKAFED-HKKNVYMEADIRCSSAIQSMERKLRAACHSSDASIDNV-VKVLDGLISEYETS 316 (910)
Q Consensus 256 ~~l~~~~~~-~~~~n~~~s~~~C~~~l~~l~~~l~~~~~~~~~~~~~~-~~~~~~~~~~Y~~~ 316 (910)
..|...+.. |... -...|..++..+...|...... +.+|... ......++..|...
T Consensus 329 ~~i~~~l~~lf~~q----L~~L~~~~l~~Fk~~l~~~lk~-~~~Fa~~v~~~~~~~~~~F~~~ 386 (742)
T PF05879_consen 329 SKIDSELQPLFQKQ----LKHLRKKLLESFKEALSSALKS-GEDFAEAVRECKQSALEEFEES 386 (742)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhc-CCCHHHHHHHHHHHHHHHHHHH
Confidence 666665543 2221 1244666777666666643221 2233322 33344455555543
No 96
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=97.54 E-value=0.33 Score=56.81 Aligned_cols=24 Identities=21% Similarity=0.230 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 552 EQCLTTLRLELKAAESKMRSYEVE 575 (910)
Q Consensus 552 e~ei~~l~~~lee~~~ki~~le~e 575 (910)
..+|.+|++.+.+++.+++++-..
T Consensus 611 R~Ei~~LqrRlqaaE~R~eel~q~ 634 (961)
T KOG4673|consen 611 RGEIEDLQRRLQAAERRCEELIQQ 634 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455666666666666666665543
No 97
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=97.50 E-value=0.2 Score=53.53 Aligned_cols=76 Identities=16% Similarity=0.227 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 539 EEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYL 614 (910)
Q Consensus 539 ~ei~~~~~kl~~~e~ei~~l~~~lee~~~ki~~le~e~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~e~~el 614 (910)
.++..+..++..++.++-.....|.+..--++.+.+.+...+-++.++..-+......+..+-.+...++..+..+
T Consensus 151 QqLskaesK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~Ql 226 (305)
T PF14915_consen 151 QQLSKAESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQL 226 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444555555555555555555555555555555555555555554444444444444444433
No 98
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=97.48 E-value=6.3e-05 Score=92.85 Aligned_cols=9 Identities=11% Similarity=-0.086 Sum_probs=5.5
Q ss_pred cCCCChHHH
Q 002544 317 CHGPGKWQK 325 (910)
Q Consensus 317 ~~gp~k~~~ 325 (910)
+.||.|..-
T Consensus 123 V~c~~ke~y 131 (713)
T PF05622_consen 123 VQCENKEEY 131 (713)
T ss_dssp TSSSTHHHH
T ss_pred hcCccHHHH
Confidence 367777643
No 99
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.46 E-value=0.58 Score=57.85 Aligned_cols=67 Identities=18% Similarity=0.225 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 414 ISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKR 492 (910)
Q Consensus 414 ~~Le~e~~~L~~qle~~k~e~~~~kkk~Ee~~~e~~~~k~kl~~eleel~~~~ee~e~~~~~le~~~~~~q~Elee~~~ 492 (910)
..+..+.+.+...+..+......|-.+ ++....+....+....+++. +..+-....+++.+.--|+-
T Consensus 156 iElK~EYeelK~E~~kAE~~t~~~~~k-----------kk~I~aEkk~aK~~k~eaek-y~~lkde~~~~q~e~~L~qL 222 (1141)
T KOG0018|consen 156 IELKPEYEELKYEMAKAEETTTGNYKK-----------KKSIAAEKKEAKEGKEEAEK-YQRLKDEKGKAQKEQFLWEL 222 (1141)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhhHhhh-----------hhHHHHHHHHHHhhHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 356666777776666666666666555 33344444444444444433 34444445555555555553
No 100
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=97.45 E-value=0.51 Score=57.05 Aligned_cols=99 Identities=13% Similarity=0.256 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 002544 625 FEEVQERCKVAEKEAKKATELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESELE 704 (910)
Q Consensus 625 ~eE~e~~l~~~e~e~~~~~~~~e~l~~e~~~~~~e~~e~~r~~~e~~~~ie~~~~~ie~Le~e~~~Le~Ele~~~~~~~~ 704 (910)
+++...+++..+..+..+.+....+...++.++.+...+.++..+....++.+++++..+..+...|+..+.....+..
T Consensus 447 ~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~~~~~~qs~~- 525 (980)
T KOG0980|consen 447 YDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQRTLSNLAQSHN- 525 (980)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH-
Confidence 3333333333333333333333334444444444444444455555555555555555555555555554444333222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 002544 705 ALSKVALLEARVEEREKEIESL 726 (910)
Q Consensus 705 ~~~~~~elE~rl~e~eee~e~l 726 (910)
..+.+++..+..++..+..+
T Consensus 526 --~~~~~l~~~l~~KD~~~~~~ 545 (980)
T KOG0980|consen 526 --NQLAQLEDLLKQKDRLAAEL 545 (980)
T ss_pred --HHHHHHHHHHHhhHHHHHHH
Confidence 22345555556666666655
No 101
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=97.44 E-value=0.25 Score=53.18 Aligned_cols=69 Identities=14% Similarity=0.191 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 530 FSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQ 598 (910)
Q Consensus 530 ~~~~~~ele~ei~~~~~kl~~~e~ei~~l~~~lee~~~ki~~le~e~~~L~~el~dL~~~le~~~~~~~ 598 (910)
+......+.+..+++..++..+...+.++.....++..++..+...+..+...+..+-..+........
T Consensus 32 l~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~~l~e~~~ 100 (294)
T COG1340 32 LRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQELRKEYRELKEKRN 100 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333344444444444444444444444555555555555555555555554444444444444443333
No 102
>PRK11281 hypothetical protein; Provisional
Probab=97.40 E-value=0.87 Score=58.51 Aligned_cols=34 Identities=12% Similarity=0.133 Sum_probs=15.3
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 002544 455 VCSEIEVLKSRSTAAEARLAAAREQALSAQEEVE 488 (910)
Q Consensus 455 l~~eleel~~~~ee~e~~~~~le~~~~~~q~Ele 488 (910)
+..++++.+..+.+.+..+..+.....+++..+.
T Consensus 133 ~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~ls 166 (1113)
T PRK11281 133 TLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALY 166 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHH
Confidence 3344444444444444444444444444444444
No 103
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=97.36 E-value=0.64 Score=56.08 Aligned_cols=58 Identities=12% Similarity=0.239 Sum_probs=25.4
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 360 YRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLR 417 (910)
Q Consensus 360 ~~~le~e~e~l~k~lee~e~~~~e~~k~le~~i~el~~~lee~~~~~~~l~~~~~~Le 417 (910)
+..++.+.+.+..++..--....+....+..++..+....+.....+..|+..+..|.
T Consensus 6 l~qlq~Erd~ya~~lk~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk 63 (617)
T PF15070_consen 6 LKQLQAERDQYAQQLKEESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELK 63 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444433333333444444444444444444444444444444443
No 104
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=97.35 E-value=0.13 Score=54.20 Aligned_cols=7 Identities=0% Similarity=-0.202 Sum_probs=3.3
Q ss_pred CCCCCCc
Q 002544 834 TTSPLKY 840 (910)
Q Consensus 834 ~~~~~~~ 840 (910)
..++..|
T Consensus 218 ~d~iv~C 224 (239)
T COG1579 218 KDEIVFC 224 (239)
T ss_pred CCCCccC
Confidence 3445555
No 105
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=97.32 E-value=0.35 Score=52.15 Aligned_cols=80 Identities=20% Similarity=0.222 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 537 KEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQ 616 (910)
Q Consensus 537 le~ei~~~~~kl~~~e~ei~~l~~~lee~~~ki~~le~e~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~e~~el~~ 616 (910)
+-+++..++.+.+....+|..+..+..+.-..+..+-.....+..+...+...+......+..+...+..+..++.++..
T Consensus 163 l~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elre~~k 242 (294)
T COG1340 163 LKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNELRELEK 242 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444444444444444444444444444444444444444444444433
No 106
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.20 E-value=0.67 Score=53.07 Aligned_cols=84 Identities=15% Similarity=0.121 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 533 TLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKV 612 (910)
Q Consensus 533 ~~~ele~ei~~~~~kl~~~e~ei~~l~~~lee~~~ki~~le~e~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~e~~ 612 (910)
++-+++.++..++..+.....+...+..........-..++..+..|+.+|.++..+-..+-+.-.+|+.+.-.|++.+.
T Consensus 108 kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~RllseYSELEEENIsLQKqVs 187 (772)
T KOG0999|consen 108 KILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSEYSELEEENISLQKQVS 187 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 34444445444444444444444444444444444445566677777777777777777777777777777777777776
Q ss_pred HHHH
Q 002544 613 YLEQ 616 (910)
Q Consensus 613 el~~ 616 (910)
.|+.
T Consensus 188 ~LR~ 191 (772)
T KOG0999|consen 188 NLRQ 191 (772)
T ss_pred HHhh
Confidence 6654
No 107
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=97.20 E-value=0.92 Score=54.54 Aligned_cols=92 Identities=20% Similarity=0.194 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH
Q 002544 523 EDVLREEFSSTLAEKEEEMKEKATKIEHAE-------QCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKL--EAV 593 (910)
Q Consensus 523 ~~~~~~E~~~~~~ele~ei~~~~~kl~~~e-------~ei~~l~~~lee~~~ki~~le~e~~~L~~el~dL~~~l--e~~ 593 (910)
...+..+|+.....+.+++..++....... .++..+...+.++...+...+...+.|..+++.+.... ..-
T Consensus 410 l~~L~~qWe~~R~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~~~Rs~Y 489 (594)
T PF05667_consen 410 LVELAQQWEKHRAPLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKDVNRSAY 489 (594)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHH
Confidence 333344444444444444444444333222 33344444444444444444444444444444433321 112
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 002544 594 NAKAQSFEREARIMEQDKVYL 614 (910)
Q Consensus 594 ~~~~~~lEk~~~~Le~e~~el 614 (910)
...|.++-+.++.-+.++..+
T Consensus 490 t~RIlEIv~NI~KQk~eI~KI 510 (594)
T PF05667_consen 490 TRRILEIVKNIRKQKEEIEKI 510 (594)
T ss_pred HHHHHHHHHhHHHHHHHHHHH
Confidence 344444444444444444443
No 108
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=97.12 E-value=0.37 Score=48.55 Aligned_cols=64 Identities=19% Similarity=0.232 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 557 TLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKS 620 (910)
Q Consensus 557 ~l~~~lee~~~ki~~le~e~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~e~~el~~~l~e 620 (910)
.+......+-.....++++...|..+|..|.............+.++...|......|+.++..
T Consensus 78 ~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~ 141 (193)
T PF14662_consen 78 SLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCE 141 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHH
Confidence 3334444444455555555555555565555555555555555555555555555555555433
No 109
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=97.10 E-value=0.61 Score=50.61 Aligned_cols=91 Identities=16% Similarity=0.156 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 514 RTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAV 593 (910)
Q Consensus 514 ~~~~e~q~~~~~~~~E~~~~~~ele~ei~~~~~kl~~~e~ei~~l~~~lee~~~ki~~le~e~~~L~~el~dL~~~le~~ 593 (910)
.+...++.-.......|.....+.+.-...+...+.....++.+++..+.++..++...+.-....+..+.++..+...+
T Consensus 153 ~El~~A~~LL~~v~~~~~~~~~~~~~l~~~i~~~L~~~~~kL~Dl~~~l~eA~~~~~ea~~ln~~n~~~l~~~~~k~~~l 232 (264)
T PF06008_consen 153 DELKEAEDLLSRVQKWFQKPQQENESLAEAIRDDLNDYNAKLQDLRDLLNEAQNKTREAEDLNRANQKNLEDLEKKKQEL 232 (264)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444455555555556666666666555555555555555555444444444
Q ss_pred HHHHHHHHHHH
Q 002544 594 NAKAQSFEREA 604 (910)
Q Consensus 594 ~~~~~~lEk~~ 604 (910)
.........-+
T Consensus 233 ~~~~~~~~~~L 243 (264)
T PF06008_consen 233 SEQQNEVSETL 243 (264)
T ss_pred HHHHHHHHHHH
Confidence 44333333333
No 110
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=97.09 E-value=0.7 Score=51.17 Aligned_cols=81 Identities=9% Similarity=0.134 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 002544 582 ETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAARKGKS 661 (910)
Q Consensus 582 el~dL~~~le~~~~~~~~lEk~~~~Le~e~~el~~~l~e~~~~~eE~e~~l~~~e~e~~~~~~~~e~l~~e~~~~~~e~~ 661 (910)
.+..+...-..+...+.-+..+...++.-+..-.+-+.+....++.....+..++++...|+...+.....+-.+..+..
T Consensus 203 ~~~~~~~~E~~Lr~QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~ 282 (309)
T PF09728_consen 203 QVQTLKETEKELREQLNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQ 282 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 33333333333444444444444444444444444444444445555555555555555555555544444333333333
Q ss_pred H
Q 002544 662 E 662 (910)
Q Consensus 662 e 662 (910)
.
T Consensus 283 ~ 283 (309)
T PF09728_consen 283 K 283 (309)
T ss_pred H
Confidence 3
No 111
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=97.08 E-value=1.2 Score=53.91 Aligned_cols=138 Identities=17% Similarity=0.165 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 501 AKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQK 580 (910)
Q Consensus 501 ~k~~lek~~~~~e~~~~e~q~~~~~~~~E~~~~~~ele~ei~~~~~kl~~~e~ei~~l~~~lee~~~ki~~le~e~~~L~ 580 (910)
.++.++............+......+..++.......++.+.+.+ +++.....+...+.+++.+...+++.++.....+
T Consensus 345 ~~~~l~~~~~ear~~~~q~~~ql~~le~~~~e~q~~~qe~~~e~e-qLr~elaql~a~r~q~eka~~~~ee~e~~~l~~e 423 (980)
T KOG0980|consen 345 LKAQLENLKEEARRRIEQYENQLLALEGELQEQQREAQENREEQE-QLRNELAQLLASRTQLEKAQVLVEEAENKALAAE 423 (980)
T ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 444444444333334444444444444444444443333333222 2222222233333344444444455555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 581 LETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEA 639 (910)
Q Consensus 581 ~el~dL~~~le~~~~~~~~lEk~~~~Le~e~~el~~~l~e~~~~~eE~e~~l~~~e~e~ 639 (910)
.+.+.+...+......-..+-++.....+++...+....+......++.+.+..+..+.
T Consensus 424 ~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~ 482 (980)
T KOG0980|consen 424 NRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAA 482 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 55554444444444444444444444444444444333333333333333343333333
No 112
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=97.06 E-value=0.49 Score=48.96 Aligned_cols=56 Identities=20% Similarity=0.207 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 472 RLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLA 535 (910)
Q Consensus 472 ~~~~le~~~~~~q~Elee~~~k~e~~~~~~k~~lek~~~~~e~~~~e~q~~~~~~~~E~~~~~~ 535 (910)
.+..+.+.......+..+|+.+|+... +....+...++++.....++.++......
T Consensus 10 ~~~~~~~e~~~~E~e~~~l~~k~~e~~--------~~~~~m~~i~~e~Ek~i~~~i~e~~~~~~ 65 (207)
T PF05010_consen 10 AIKKVQEEVAEKEEEEQELKKKYEELH--------KENQEMRKIMEEYEKTIAQMIEEKQKQKE 65 (207)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHH--------HhHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 344444444444566777887777632 12223333444454445554444443333
No 113
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=97.00 E-value=0.8 Score=50.37 Aligned_cols=62 Identities=15% Similarity=0.196 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 553 QCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYL 614 (910)
Q Consensus 553 ~ei~~l~~~lee~~~ki~~le~e~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~e~~el 614 (910)
.++............+|......+..+..+|..-.+.+.+-...+..+|....-++++...+
T Consensus 217 ~ela~r~aa~Qq~~q~i~qrd~~i~q~~q~iaar~e~I~~re~~lq~lEt~q~~leqeva~l 278 (499)
T COG4372 217 EELARRAAAAQQTAQAIQQRDAQISQKAQQIAARAEQIRERERQLQRLETAQARLEQEVAQL 278 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444455555555555555554444444444444444444444444444443
No 114
>PRK09039 hypothetical protein; Validated
Probab=96.90 E-value=0.26 Score=55.38 Aligned_cols=27 Identities=26% Similarity=0.410 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 002544 674 IERVQRQIESLERQKTDLTNEVNRIRE 700 (910)
Q Consensus 674 ie~~~~~ie~Le~e~~~Le~Ele~~~~ 700 (910)
+..++.+|+.|..++..|+..|+....
T Consensus 139 V~~L~~qI~aLr~Qla~le~~L~~ae~ 165 (343)
T PRK09039 139 VELLNQQIAALRRQLAALEAALDASEK 165 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333334444444444444433
No 115
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=96.86 E-value=1.4 Score=50.90 Aligned_cols=225 Identities=18% Similarity=0.213 Sum_probs=105.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHH
Q 002544 569 MRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERC----------KVAEKE 638 (910)
Q Consensus 569 i~~le~e~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~e~~el~~~l~e~~~~~eE~e~~l----------~~~e~e 638 (910)
|+..+..+..++..|+++-..++..-...+..+.....|-.-+.++++.-..+...++.+.... ...+++
T Consensus 276 ld~aeeel~~I~e~ie~lYd~lE~EveA~~~V~~~~~~l~~~l~k~ke~n~~L~~Eie~V~~sY~l~e~e~~~vr~~e~e 355 (570)
T COG4477 276 LDEAEEELGLIQEKIESLYDLLEREVEAKNVVEENLPILPDYLEKAKENNEHLKEEIERVKESYRLAETELGSVRKFEKE 355 (570)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHH
Confidence 3455566666777777777766666666666665555555555555544333333333333322 222223
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 639 AKKATELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSKVALLEARVEE 718 (910)
Q Consensus 639 ~~~~~~~~e~l~~e~~~~~~e~~e~~r~~~e~~~~ie~~~~~ie~Le~e~~~Le~Ele~~~~~~~~~~~~~~elE~rl~e 718 (910)
+.++...++.....+..... ..+.+...++....++...+..-..+...+..+++....+...+.-+.+++.+
T Consensus 356 L~el~~~~~~i~~~~~~~~~-------~yS~lq~~l~~~~~~l~~i~~~q~~~~e~L~~LrkdEl~Are~l~~~~~~l~e 428 (570)
T COG4477 356 LKELESVLDEILENIEAQEV-------AYSELQDNLEEIEKALTDIEDEQEKVQEHLTSLRKDELEARENLERLKSKLHE 428 (570)
T ss_pred HHHHHHHHHHHHHHhhcccc-------cHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333222222222222 23444455555555555555555556666666666555554444444444433
Q ss_pred HHHHHHHHHHhhHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhhhhcch
Q 002544 719 REKEIESLLESNNE-----QRASTVKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKLDEMQQELTKARLNETALGSK 793 (910)
Q Consensus 719 ~eee~e~l~~r~~~-----qr~~~i~~Le~~le~e~~~~~ea~~r~e~l~~ql~~~k~~i~~l~~e~~~~~~~~~~~~~~ 793 (910)
...-++. .+. ..-.-....+..++....++++.-=-.+..+.-++.+..+|..+......+=.|.+ |--+
T Consensus 429 ikR~mek----~nLPGlPe~~l~l~~~~~~~i~~l~~eLse~pinm~~v~~~v~~a~~~m~~l~~~t~e~ve~a~-LaE~ 503 (570)
T COG4477 429 IKRYMEK----SNLPGLPETFLSLFFTAGHEIQDLMKELSEVPINMEAVSALVDIATEDMNTLEDETEEVVENAV-LAEQ 503 (570)
T ss_pred HHHHHHH----cCCCCCcHHHHHHHHhhhhHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 3322221 000 00011223333333333333333333444444455666666666666665555555 4444
Q ss_pred hhhhhccccccccc
Q 002544 794 LRAVSHGKRARADD 807 (910)
Q Consensus 794 ~~~~~~~~~~~~~~ 807 (910)
| +++|-|.|..+
T Consensus 504 l--IQY~NRYRs~~ 515 (570)
T COG4477 504 L--IQYGNRYRSRN 515 (570)
T ss_pred H--HHHHHHHHhhh
Confidence 4 34566666544
No 116
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=96.79 E-value=0.54 Score=51.95 Aligned_cols=38 Identities=26% Similarity=0.414 Sum_probs=25.6
Q ss_pred HHHHHHHhhcccCCCCC-hHH----HHHHHHHHHHHHHHHhhc
Q 002544 201 SATETYMSTFDRSKPPE-EVA----LGEAHEAAVQKALAVYNA 238 (910)
Q Consensus 201 ~A~~~Y~~~m~~~~~~~-e~~----L~~~H~~~~~~Al~~F~~ 238 (910)
.=+..|-..++....|. +.. ...-+..|+.+|+.+|..
T Consensus 12 ~L~~~Yv~aIn~G~vP~iesa~~~~~e~e~~~A~~~A~~~Y~~ 54 (297)
T PF02841_consen 12 ELVKSYVDAINSGSVPCIESAWQAVAEAENRAAVEKAVEHYEE 54 (297)
T ss_dssp HHHHHHHHHHHTTS--BHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777664443 343 355589999999999987
No 117
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=96.78 E-value=2.2 Score=52.09 Aligned_cols=208 Identities=15% Similarity=0.163 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH--HHH---------h
Q 002544 594 NAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAE---AAA--ARK---------G 659 (910)
Q Consensus 594 ~~~~~~lEk~~~~Le~e~~el~~~l~e~~~~~eE~e~~l~~~e~e~~~~~~~~e~l~~e---~~~--~~~---------e 659 (910)
..++..|+.++..++.++..|...+.+....++.....+......+..+...+..+..- .+. ... +
T Consensus 264 ~~EiqKL~qQL~qve~EK~~L~~~L~e~Q~qLe~a~~als~q~eki~~L~e~l~aL~~l~~~ke~~~~~d~~~~~~s~~d 343 (717)
T PF09730_consen 264 LSEIQKLKQQLLQVEREKSSLLSNLQESQKQLEHAQGALSEQQEKINRLTEQLDALRKLQEDKEQQSAEDSEKERDSHED 343 (717)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhhhhcccccccccc
Confidence 35566667777777777777666654444445555555554444444444433333220 000 000 0
Q ss_pred hHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 002544 660 KSEFENL---AMERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSKVALLEARVEEREKEIESLLESNNEQRAS 736 (910)
Q Consensus 660 ~~e~~r~---~~e~~~~ie~~~~~ie~Le~e~~~Le~Ele~~~~~~~~~~~~~~elE~rl~e~eee~e~l~~r~~~qr~~ 736 (910)
..-++.. +.-++..+..+..++..+..++..|...+........+. ...+..++..+.+.+..+ .+...+.+.
T Consensus 344 ~~~ye~Di~~~eiLe~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~~~~~e---k~~~~~e~q~L~ekl~~l-ek~~re~qe 419 (717)
T PF09730_consen 344 GDYYEVDINGLEILECKYKVAVSEVIQLKAELKALKSKYNELEERYKQE---KDRLESEVQNLKEKLMSL-EKSSREDQE 419 (717)
T ss_pred cchhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH-HHhhhhhHH
Confidence 0000110 011223333333334444444444433333333321111 234566667777777777 565666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhhhhcchhhhhhcccccccc
Q 002544 737 TVKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKLDEMQQELTKARLNETALGSKLRAVSHGKRARAD 806 (910)
Q Consensus 737 ~i~~Le~~le~e~~~~~ea~~r~e~l~~ql~~~k~~i~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 806 (910)
.+..|+..|-....--.+....+...+.+|...-..|-.+-..+-. -.++|.=-.=|-.+..|+..+.+
T Consensus 420 ri~~LE~ELr~l~~~A~E~q~~LnsAQDELvtfSEeLAqLYHHVC~-cNgeTPnRVmLD~yr~~r~~~~~ 488 (717)
T PF09730_consen 420 RISELEKELRALSKLAGESQGSLNSAQDELVTFSEELAQLYHHVCM-CNGETPNRVMLDYYRQGRQTRRE 488 (717)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-ccCCCCccHHHHHHHhhhhhhcc
Confidence 7888888777776665555555555555555444444444332221 23566211113334445544443
No 118
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=96.77 E-value=0.73 Score=46.46 Aligned_cols=89 Identities=17% Similarity=0.202 Sum_probs=47.7
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 002544 657 RKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSKVALLEARVEEREKEIESLLESNNEQRAS 736 (910)
Q Consensus 657 ~~e~~e~~r~~~e~~~~ie~~~~~ie~Le~e~~~Le~Ele~~~~~~~~~~~~~~elE~rl~e~eee~e~l~~r~~~qr~~ 736 (910)
++....+..+....+.+.-.+...+..|+.++..+..+.+.+.....++......|-..+..++.-+-.. ......+..
T Consensus 80 EE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~l~~~~-da~l~e~t~ 158 (193)
T PF14662_consen 80 EEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCEFESLICQR-DAILSERTQ 158 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHH-HHHHHHHHh
Confidence 3333334434444444455555566666666777777777766666655555555655555554444444 333444444
Q ss_pred HHHHHHHHHH
Q 002544 737 TVKKLEDLLE 746 (910)
Q Consensus 737 ~i~~Le~~le 746 (910)
.|++|...++
T Consensus 159 ~i~eL~~~ie 168 (193)
T PF14662_consen 159 QIEELKKTIE 168 (193)
T ss_pred hHHHHHHHHH
Confidence 5555555444
No 119
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=96.75 E-value=0.25 Score=47.59 Aligned_cols=120 Identities=19% Similarity=0.241 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 351 SERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSL 430 (910)
Q Consensus 351 ke~~~L~~e~~~le~e~e~l~k~lee~e~~~~e~~k~le~~i~el~~~lee~~~~~~~l~~~~~~Le~e~~~L~~qle~~ 430 (910)
.++..+...+......+..+...+........+...+|+.++. ........+..+..+...+..++..+
T Consensus 10 ~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~-----------~Ha~~~~~L~~lr~e~~~~~~~~~~l 78 (132)
T PF07926_consen 10 SELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELV-----------KHAEDIKELQQLREELQELQQEINEL 78 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444433333333333344544443 22233333444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 002544 431 KNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQAL 481 (910)
Q Consensus 431 k~e~~~~kkk~Ee~~~e~~~~k~kl~~eleel~~~~ee~e~~~~~le~~~~ 481 (910)
+..+...+..++..-...+..+..|..++.+++.+++++.....-|..++.
T Consensus 79 ~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE 129 (132)
T PF07926_consen 79 KAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQLE 129 (132)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444444444333334455777888888888888888887777766554
No 120
>PRK09039 hypothetical protein; Validated
Probab=96.74 E-value=0.43 Score=53.72 Aligned_cols=6 Identities=17% Similarity=0.357 Sum_probs=2.2
Q ss_pred HHHHHH
Q 002544 672 AVIERV 677 (910)
Q Consensus 672 ~~ie~~ 677 (910)
..|+.+
T Consensus 158 ~~L~~a 163 (343)
T PRK09039 158 AALDAS 163 (343)
T ss_pred HHHHHH
Confidence 333333
No 121
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=96.68 E-value=0.95 Score=46.54 Aligned_cols=26 Identities=19% Similarity=0.341 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 662 EFENLAMERMAVIERVQRQIESLERQ 687 (910)
Q Consensus 662 e~~r~~~e~~~~ie~~~~~ie~Le~e 687 (910)
++...+......++.....+..|++.
T Consensus 122 eL~~kL~~~~~~l~~~~~ki~~Lek~ 147 (194)
T PF15619_consen 122 ELQRKLSQLEQKLQEKEKKIQELEKQ 147 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445555554444444443
No 122
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=96.54 E-value=0.75 Score=44.48 Aligned_cols=76 Identities=18% Similarity=0.320 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 545 ATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKS 620 (910)
Q Consensus 545 ~~kl~~~e~ei~~l~~~lee~~~ki~~le~e~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~e~~el~~~l~e 620 (910)
+.+...+...|..+.+.++..+.....+.......+.++..|..++..+......++..+..+..+...+...+..
T Consensus 16 ~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~ 91 (140)
T PF10473_consen 16 ESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQK 91 (140)
T ss_pred HHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444444444444444444444444444444444444444444444444444444444444443333
No 123
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.51 E-value=3.7 Score=51.20 Aligned_cols=93 Identities=14% Similarity=0.118 Sum_probs=49.6
Q ss_pred HHHHHHHhccCCCcccCCcccChHHHHHHHHH---HHHHhcCCCCCCccchHHHHHHHHHHHHHHHHHHHHHhhcccC--
Q 002544 139 DALTKFVFERTRPKQVGATVLTGPVLIGITES---YLDAINNGAVPTISSSWQSVEEAECRRAYDSATETYMSTFDRS-- 213 (910)
Q Consensus 139 ~~l~~~i~~~~~pK~i~G~~ltg~~l~~l~~~---yv~ain~g~vP~i~sa~~~~~~~e~~~a~~~A~~~Y~~~m~~~-- 213 (910)
..|.+.|-+-...=.|+|.+||-..++.-+.. .|.|-| +-..+-++..++...- .+=-.+| ..|+..
T Consensus 86 ~~F~R~I~~G~seY~IDne~VT~eeY~~eLekinIlVkARN---FLVFQGdVE~IA~k~P----kElt~LF-EEISgSiE 157 (1141)
T KOG0018|consen 86 RRFTRAINGGTSEYMIDNEIVTREEYLEELEKINILVKARN---FLVFQGDVEKIAGKNP----KELTALF-EEISGSIE 157 (1141)
T ss_pred hhhhhhhcCCceeEEEcceeccHHHHHHHHhhcceeeeeee---EEEecChHHHHhccCH----HHHHHHH-HHHhhhhh
Confidence 34555555333444568888887777666554 233333 3333333333332211 0111122 233332
Q ss_pred CCCChHHHHHHHHHHHHHHHHHhhcc
Q 002544 214 KPPEEVALGEAHEAAVQKALAVYNAG 239 (910)
Q Consensus 214 ~~~~e~~L~~~H~~~~~~Al~~F~~~ 239 (910)
..|..+.+...-..|...+...|.++
T Consensus 158 lK~EYeelK~E~~kAE~~t~~~~~kk 183 (1141)
T KOG0018|consen 158 LKPEYEELKYEMAKAEETTTGNYKKK 183 (1141)
T ss_pred hhHHHHHHHHHHHHHHHHHhhHhhhh
Confidence 23666788888888888888888764
No 124
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=96.50 E-value=2.4 Score=49.02 Aligned_cols=92 Identities=13% Similarity=0.157 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 566 ESKMRSYEVEISSQKLETKELSEKLE---AVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKA 642 (910)
Q Consensus 566 ~~ki~~le~e~~~L~~el~dL~~~le---~~~~~~~~lEk~~~~Le~e~~el~~~l~e~~~~~eE~e~~l~~~e~e~~~~ 642 (910)
...+.........|..+++.+...+- .....+..+++.+..+...+..+...+......+-.++..++.++..+...
T Consensus 315 ~~~l~k~ke~n~~L~~Eie~V~~sY~l~e~e~~~vr~~e~eL~el~~~~~~i~~~~~~~~~~yS~lq~~l~~~~~~l~~i 394 (570)
T COG4477 315 PDYLEKAKENNEHLKEEIERVKESYRLAETELGSVRKFEKELKELESVLDEILENIEAQEVAYSELQDNLEEIEKALTDI 394 (570)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHH
Confidence 33344444445555555555544432 222334445555555555555554444444444444444444444444444
Q ss_pred HHHHHHHHHHHHHHH
Q 002544 643 TELADRERAEAAAAR 657 (910)
Q Consensus 643 ~~~~e~l~~e~~~~~ 657 (910)
....+..+..+..++
T Consensus 395 ~~~q~~~~e~L~~Lr 409 (570)
T COG4477 395 EDEQEKVQEHLTSLR 409 (570)
T ss_pred hhhHHHHHHHHHHHH
Confidence 444444443333333
No 125
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.46 E-value=2.5 Score=48.73 Aligned_cols=137 Identities=20% Similarity=0.193 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 364 EDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQ 443 (910)
Q Consensus 364 e~e~e~l~k~lee~e~~~~e~~k~le~~i~el~~~lee~~~~~~~l~~~~~~Le~e~~~L~~qle~~k~e~~~~kkk~Ee 443 (910)
+..++.|..+.+--++.+.+-+.+++.+..+|+..++.+++....-+.....+.....+|.
T Consensus 312 er~IerLkeqr~rderE~~EeIe~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLa------------------- 372 (654)
T KOG4809|consen 312 ERIIERLKEQRERDERERLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLA------------------- 372 (654)
T ss_pred HHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------
Confidence 3566667666666665544445555555555555555555444443333333333322222
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 444 VLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQRE 523 (910)
Q Consensus 444 ~~~e~~~~k~kl~~eleel~~~~ee~e~~~~~le~~~~~~q~Elee~~~k~e~~~~~~k~~lek~~~~~e~~~~e~q~~~ 523 (910)
.+--++.++|..+.--++...+.|..++.++..+..-++|.+..-+.+ .....+++..+.....+...++.+
T Consensus 373 ------s~glk~ds~Lk~leIalEqkkEec~kme~qLkkAh~~~ddar~~pe~~--d~i~~le~e~~~y~de~~kaqaev 444 (654)
T KOG4809|consen 373 ------SAGLKRDSKLKSLEIALEQKKEECSKMEAQLKKAHNIEDDARMNPEFA--DQIKQLEKEASYYRDECGKAQAEV 444 (654)
T ss_pred ------HHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcChhhH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223334566666666777777788888888888877777666554443 566677777777777777777777
Q ss_pred HHHH
Q 002544 524 DVLR 527 (910)
Q Consensus 524 ~~~~ 527 (910)
+.+.
T Consensus 445 drlL 448 (654)
T KOG4809|consen 445 DRLL 448 (654)
T ss_pred HHHH
Confidence 7644
No 126
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=96.44 E-value=1.4 Score=45.41 Aligned_cols=70 Identities=29% Similarity=0.392 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 704 EALSKVALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKLDEMQ 777 (910)
Q Consensus 704 ~~~~~~~elE~rl~e~eee~e~l~~r~~~qr~~~i~~Le~~le~e~~~~~ea~~r~e~l~~ql~~~k~~i~~l~ 777 (910)
.+..++..++.++++.+..+..+ .+.... .-.+....+..+.....++...+..+..++..+.+.|.+-.
T Consensus 122 eL~~kL~~~~~~l~~~~~ki~~L--ek~leL--~~k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~klkEKe 191 (194)
T PF15619_consen 122 ELQRKLSQLEQKLQEKEKKIQEL--EKQLEL--ENKSFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQKLKEKE 191 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHH--HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445566666666666667666 333333 34556666666666666666677767766777766666544
No 127
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=96.42 E-value=2.4 Score=48.05 Aligned_cols=105 Identities=15% Similarity=0.098 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 575 EISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAA 654 (910)
Q Consensus 575 e~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~e~~el~~~l~e~~~~~eE~e~~l~~~e~e~~~~~~~~e~l~~e~~ 654 (910)
-+..|+..+++|.......--+...+++.++.|..-+...+..+.+.....+.++.+++.+......+.+++..--.+-.
T Consensus 363 iinkLk~niEeLIedKY~viLEKnd~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~~eiQqKn 442 (527)
T PF15066_consen 363 IINKLKENIEELIEDKYRVILEKNDIEKTLQNLQEALANTQKHLQESRNEKETLQLELKKIKANYVHLQERYMTEIQQKN 442 (527)
T ss_pred HHHHHHHHHHHHHHhHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhh
Confidence 44455555555555555555555556666666666666655555555555555555555555555444444432111111
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHH
Q 002544 655 AARKGKSEFENLAMERMAVIERVQR 679 (910)
Q Consensus 655 ~~~~e~~e~~r~~~e~~~~ie~~~~ 679 (910)
.......++.+.+.+.+.++++++.
T Consensus 443 ksvsqclEmdk~LskKeeeverLQ~ 467 (527)
T PF15066_consen 443 KSVSQCLEMDKTLSKKEEEVERLQQ 467 (527)
T ss_pred hHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 1222333344444445454444433
No 128
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=96.37 E-value=2.6 Score=47.93 Aligned_cols=37 Identities=19% Similarity=0.326 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 002544 709 VALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLE 746 (910)
Q Consensus 709 ~~elE~rl~e~eee~e~l~~r~~~qr~~~i~~Le~~le 746 (910)
...++..+......++.+ ......++..|.+++....
T Consensus 212 ~~~l~~~l~~~q~~l~eL-~~~~~~L~~~Ias~e~~aA 248 (420)
T COG4942 212 LAQLNSELSADQKKLEEL-RANESRLKNEIASAEAAAA 248 (420)
T ss_pred HHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHH
Confidence 345666666666666666 3333333444444444443
No 129
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=96.18 E-value=5.2 Score=49.51 Aligned_cols=115 Identities=16% Similarity=0.224 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 529 EFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIME 608 (910)
Q Consensus 529 E~~~~~~ele~ei~~~~~kl~~~e~ei~~l~~~lee~~~ki~~le~e~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le 608 (910)
||++...+++..+.++..++.....+...+...+.+...-|..+...+.....++.+|..+++...+....|.=++..+.
T Consensus 82 e~e~~~~~le~~l~e~~~~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~ 161 (769)
T PF05911_consen 82 EWEKIKSELEAKLAELSKRLAESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLS 161 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555666666666666666777788888888888888888888888888888888877777777766666666
Q ss_pred HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 609 QDKVYLEQK-------YKSEFERFEEVQERCKVAEKEAKKAT 643 (910)
Q Consensus 609 ~e~~el~~~-------l~e~~~~~eE~e~~l~~~e~e~~~~~ 643 (910)
.++.--... .+...+..-+.-..+..++.++++++
T Consensus 162 keleir~~E~~~~~~~ae~a~kqhle~vkkiakLEaEC~rLr 203 (769)
T PF05911_consen 162 KELEIRNEEREYSRRAAEAASKQHLESVKKIAKLEAECQRLR 203 (769)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 665422111 12222233334445555555555554
No 130
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=96.18 E-value=0.98 Score=43.52 Aligned_cols=45 Identities=29% Similarity=0.358 Sum_probs=24.3
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 454 QVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAV 498 (910)
Q Consensus 454 kl~~eleel~~~~ee~e~~~~~le~~~~~~q~Elee~~~k~e~~~ 498 (910)
.+..++..+.....+.......+...+.....-+.+...+|+..+
T Consensus 7 ~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El 51 (132)
T PF07926_consen 7 SLQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYEREL 51 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555555555555555565543
No 131
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=96.18 E-value=1.6 Score=47.95 Aligned_cols=102 Identities=16% Similarity=0.220 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 387 RYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLK-NE--ISDWKRKYDQVLTKQKAMEDQVCSEIEVLK 463 (910)
Q Consensus 387 ~le~~i~el~~~lee~~~~~~~l~~~~~~Le~e~~~L~~qle~~k-~e--~~~~kkk~Ee~~~e~~~~k~kl~~eleel~ 463 (910)
-+-.++..-+.+.|++......++.....+.....++.-+...-. .. -......+...+.+..+..+.|..++..|+
T Consensus 13 IL~~eLe~cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk~L~~Ev~~Lr 92 (319)
T PF09789_consen 13 ILSQELEKCQSERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNKKLKEEVEELR 92 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444445555555555555555555544444331111000 00 000112222233334455777889999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Q 002544 464 SRSTAAEARLAAAREQALSAQEEVE 488 (910)
Q Consensus 464 ~~~ee~e~~~~~le~~~~~~q~Ele 488 (910)
.++.++.+-+.-+..++...+....
T Consensus 93 qkl~E~qGD~KlLR~~la~~r~~~~ 117 (319)
T PF09789_consen 93 QKLNEAQGDIKLLREKLARQRVGDE 117 (319)
T ss_pred HHHHHHhchHHHHHHHHHhhhhhhc
Confidence 9999999988888887776555444
No 132
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=96.10 E-value=4.6 Score=48.26 Aligned_cols=29 Identities=17% Similarity=0.276 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 736 STVKKLEDLLESERRSRAAANAMAERLSL 764 (910)
Q Consensus 736 ~~i~~Le~~le~e~~~~~ea~~r~e~l~~ 764 (910)
..+..++..|..++++.+-|+--+....-
T Consensus 589 E~L~~~E~rLNeARREHtKaVVsLRQ~qr 617 (739)
T PF07111_consen 589 EQLSEMEKRLNEARREHTKAVVSLRQIQR 617 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555544444333
No 133
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=96.09 E-value=3 Score=46.03 Aligned_cols=12 Identities=42% Similarity=0.528 Sum_probs=5.7
Q ss_pred chhhhh-hccCCC
Q 002544 883 FGAELL-QLRNPN 894 (910)
Q Consensus 883 ~~~~~~-~~~~~~ 894 (910)
||..|= ++-+|+
T Consensus 455 f~~~lR~qad~P~ 467 (499)
T COG4372 455 FGWCLRSQADTPS 467 (499)
T ss_pred HHHHHHHhcCCcc
Confidence 444444 444553
No 134
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.97 E-value=5.2 Score=47.76 Aligned_cols=49 Identities=12% Similarity=0.179 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 398 LADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLT 446 (910)
Q Consensus 398 ~lee~~~~~~~l~~~~~~Le~e~~~L~~qle~~k~e~~~~kkk~Ee~~~ 446 (910)
+-+.++.++-.....+.........+.+.++..-+++...+.+++..+.
T Consensus 120 ~e~~lq~q~e~~~n~~q~~~~k~~el~~e~~~k~ae~~~lr~k~dss~s 168 (716)
T KOG4593|consen 120 QEEKLQEQLERNRNQCQANLKKELELLREKEDKLAELGTLRNKLDSSLS 168 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444555555555555555555555555443
No 135
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=95.89 E-value=5.7 Score=47.54 Aligned_cols=124 Identities=20% Similarity=0.223 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 431 KNEISDWKRKYDQVLT----KQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALE 506 (910)
Q Consensus 431 k~e~~~~kkk~Ee~~~----e~~~~k~kl~~eleel~~~~ee~e~~~~~le~~~~~~q~Elee~~~k~e~~~~~~k~~le 506 (910)
+.++++..+...+.++ ...++-..|......|...+.+.+.+....-+.+..++.+.+.++..+.. ...+++
T Consensus 139 q~ELee~q~~Hqeql~~Lt~aHq~~l~sL~~k~~~Le~~L~~le~~r~~e~~~La~~q~e~d~L~~qLsk----~~~~le 214 (739)
T PF07111_consen 139 QRELEEAQRLHQEQLSSLTQAHQEALASLTSKAEELEKSLESLETRRAGEAKELAEAQREADLLREQLSK----TQEELE 214 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hHHHHH
Confidence 3455555555554442 23334445666666777777777776666667777777777777766554 334444
Q ss_pred HHHHHHH---HHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 507 KAAIVQE---RTSKE-------MQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLR 559 (910)
Q Consensus 507 k~~~~~e---~~~~e-------~q~~~~~~~~E~~~~~~ele~ei~~~~~kl~~~e~ei~~l~ 559 (910)
-....+. +.+.+ .+.|. .-+.++...+..++++...+..-++=+..++..+.
T Consensus 215 ~q~tlv~~LR~YvGeq~p~~~~~~~we-~Er~~L~~tVq~L~edR~~L~~T~ELLqVRvqSLt 276 (739)
T PF07111_consen 215 AQVTLVEQLRKYVGEQVPPEVHSQAWE-PEREELLETVQHLQEDRDALQATAELLQVRVQSLT 276 (739)
T ss_pred HHHHHHHHHHHHHhhhCCcccccHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4433332 11111 01111 11234445555566665555555444444444433
No 136
>PF13514 AAA_27: AAA domain
Probab=95.89 E-value=9.6 Score=50.10 Aligned_cols=15 Identities=33% Similarity=0.589 Sum_probs=9.6
Q ss_pred ccccCCchHHHHHhhc
Q 002544 63 DNRKITPRDYLEIALR 78 (910)
Q Consensus 63 ~g~~it~~eyLe~~L~ 78 (910)
+|.+ .|.++|...|.
T Consensus 68 ~g~~-~~e~~L~~~Lg 82 (1111)
T PF13514_consen 68 DGQP-LPEDWLAALLG 82 (1111)
T ss_pred CCCC-CCHHHHHHHHc
Confidence 4664 56777777764
No 137
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=95.71 E-value=2.1 Score=49.90 Aligned_cols=205 Identities=16% Similarity=0.146 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 562 LKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKK 641 (910)
Q Consensus 562 lee~~~ki~~le~e~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~e~~el~~~l~e~~~~~eE~e~~l~~~e~e~~~ 641 (910)
..++++++..|+..+..|..+..-|.++.+..+..|..||--+..-...+...++.+...- -....++.....
T Consensus 106 ~~~yQerLaRLe~dkesL~LQvsvLteqVeaQgEKIrDLE~cie~kr~kLnatEEmLQqel-------lsrtsLETqKlD 178 (861)
T KOG1899|consen 106 YPEYQERLARLEMDKESLQLQVSVLTEQVEAQGEKIRDLETCIEEKRNKLNATEEMLQQEL-------LSRTSLETQKLD 178 (861)
T ss_pred chHHHHHHHHHhcchhhheehHHHHHHHHHHhhhhHHHHHHHHHHHHhhhchHHHHHHHHH-------HhhhhHHHHHhH
Confidence 4455566666666666666666666666666666666655555554444444444322211 112334444444
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 642 ATELADRERAEAAAARKGKSEFENLAMERMAVIERVQR-QIESLERQKTDLTNEVNRIRESELEALSKVALLEARVEERE 720 (910)
Q Consensus 642 ~~~~~e~l~~e~~~~~~e~~e~~r~~~e~~~~ie~~~~-~ie~Le~e~~~Le~Ele~~~~~~~~~~~~~~elE~rl~e~e 720 (910)
+-.++.++...+.+++++..+.+.++-..+..+.+++. .+..+..+....+. .+......++-|-..+.+++
T Consensus 179 LmaevSeLKLkltalEkeq~e~E~K~R~se~l~qevn~~kv~e~~~erlqye~-------klkstk~e~a~L~Eq~~eK~ 251 (861)
T KOG1899|consen 179 LMAEVSELKLKLTALEKEQNETEKKLRLSENLMQEVNQSKVGEVVQERLQYET-------KLKSTKGEMAPLREQRSEKN 251 (861)
T ss_pred HHHHHHHhHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh-------hcccccchhhhHHHHHhhhh
Confidence 44444444444444444444444332222222222210 00011111000000 01111111234444445555
Q ss_pred HHHHHHHHhhHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHh
Q 002544 721 KEIESLLESNNEQR--------ASTVKKLEDLLESERRSRAAANAMAERLSLE---VQSAQAKLDEMQQELT 781 (910)
Q Consensus 721 ee~e~l~~r~~~qr--------~~~i~~Le~~le~e~~~~~ea~~r~e~l~~q---l~~~k~~i~~l~~e~~ 781 (910)
.++..+ -+..-++ ...+..|..-+++...+..+..++++.+..- +++.+.-+.-+++.+.
T Consensus 252 ~e~~rl-~~~lv~~~~~d~e~~~~rd~~lk~a~eslm~ane~kdr~ie~lr~~ln~y~k~~~iv~i~qg~~~ 322 (861)
T KOG1899|consen 252 DEEMRL-LRTLVQRLMADGEHKSLRDNTLKNALESLMRANEQKDRFIESLRNYLNNYDKNAQIVRILQGEPS 322 (861)
T ss_pred hHHHHH-HHHHHHHHhhcccchhhHHHHHHHHHHHHHhhchhhhhHHHHHHHHhhhhhhhhhhhhhhcCCCc
Confidence 555544 2222221 2234455555566666666666666665544 4455555555566666
No 138
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=95.52 E-value=12 Score=48.46 Aligned_cols=9 Identities=0% Similarity=0.102 Sum_probs=3.8
Q ss_pred HHHHHHHHh
Q 002544 354 SSLMLKYRS 362 (910)
Q Consensus 354 ~~L~~e~~~ 362 (910)
+.++.+++.
T Consensus 26 ~~iq~~l~~ 34 (1109)
T PRK10929 26 KQITQELEQ 34 (1109)
T ss_pred HHHHHHHHH
Confidence 344444443
No 139
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=95.51 E-value=2.2 Score=49.74 Aligned_cols=21 Identities=10% Similarity=0.270 Sum_probs=16.2
Q ss_pred hhHhhHHHHHHHHHhcCchhh
Q 002544 866 YTKFTVQKLKQELTKHNFGAE 886 (910)
Q Consensus 866 ~~~~~~~~~~~~~~~~~~~~~ 886 (910)
+.+++-..+=..|.+.|+|--
T Consensus 547 fa~W~~EqvcnWlae~Gl~qY 567 (861)
T KOG1899|consen 547 FADWRSEQVCNWLAEIGLGQY 567 (861)
T ss_pred hhhccHHHHHHHHHHhchHHH
Confidence 777777777888888888754
No 140
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=95.47 E-value=12 Score=48.33 Aligned_cols=91 Identities=9% Similarity=0.088 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 350 GSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEY-----LKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLS 424 (910)
Q Consensus 350 eke~~~L~~e~~~le~e~e~l~k~lee~e~~~~e~-----~k~le~~i~el~~~lee~~~~~~~l~~~~~~Le~e~~~L~ 424 (910)
....+.++..+....++...++++++........+ ...++..+......+.+.++..+..+.+.+.+....+.+-
T Consensus 64 ~~~~~~~~~~i~~ap~~~~~~~~~l~~~~~~~~~~~~~~s~~~Leq~l~~~~~~L~~~q~~l~~~~~~~~~~~~~l~~~p 143 (1109)
T PRK10929 64 LERAKQYQQVIDNFPKLSAELRQQLNNERDEPRSVPPNMSTDALEQEILQVSSQLLEKSRQAQQEQDRAREISDSLSQLP 143 (1109)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhch
Confidence 44556677777777777777777766532211111 2345555555555555555555555555544444443333
Q ss_pred HHHHHHHHHHHHHHHH
Q 002544 425 KTVDSLKNEISDWKRK 440 (910)
Q Consensus 425 ~qle~~k~e~~~~kkk 440 (910)
.....++.++.+.++.
T Consensus 144 q~~~~~~~~l~~i~~~ 159 (1109)
T PRK10929 144 QQQTEARRQLNEIERR 159 (1109)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 2224444444444443
No 141
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=95.46 E-value=3 Score=44.11 Aligned_cols=119 Identities=13% Similarity=0.178 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 488 EEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAES 567 (910)
Q Consensus 488 ee~~~k~e~~~~~~k~~lek~~~~~e~~~~e~q~~~~~~~~E~~~~~~ele~ei~~~~~kl~~~e~ei~~l~~~lee~~~ 567 (910)
++|+.=+..-+-..-..|+.....+.+.....|...+. +++-+...+.+.+....++..|++++..+.+
T Consensus 6 eEWKeGL~~~aLqKIqelE~QldkLkKE~qQrQfQleS-----------lEAaLqKQKqK~e~ek~e~s~LkREnq~l~e 74 (307)
T PF10481_consen 6 EEWKEGLPTRALQKIQELEQQLDKLKKERQQRQFQLES-----------LEAALQKQKQKVEEEKNEYSALKRENQSLME 74 (307)
T ss_pred hHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-----------HHHHHHHHHHHHHHHhhhhhhhhhhhhhHHH
Confidence 45555444432223344444444444444444444444 4444445555555566667788888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 568 KMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQK 617 (910)
Q Consensus 568 ki~~le~e~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~e~~el~~~ 617 (910)
.|+.+++.+..+..++.--+.++.-....+....+.+..|+.++..++..
T Consensus 75 ~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsE 124 (307)
T PF10481_consen 75 SCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSE 124 (307)
T ss_pred HHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888887776666555555555555555555555555555444443
No 142
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=95.40 E-value=7.1 Score=46.46 Aligned_cols=12 Identities=25% Similarity=0.362 Sum_probs=6.6
Q ss_pred hcchhhhhhccc
Q 002544 790 LGSKLRAVSHGK 801 (910)
Q Consensus 790 ~~~~~~~~~~~~ 801 (910)
+|+++++.....
T Consensus 438 ld~~i~~~~~ie 449 (498)
T TIGR03007 438 LRPTVRSVRDLR 449 (498)
T ss_pred hcCcCCCHHHHH
Confidence 566666654333
No 143
>KOG2203 consensus GTP-binding protein [General function prediction only]
Probab=95.32 E-value=7.6 Score=45.25 Aligned_cols=129 Identities=17% Similarity=0.252 Sum_probs=82.4
Q ss_pred ceEEEeeccccccccccccCCchHHHHHhhcC----------CCCCChhhhhhhHHHHHHHhhCCCCceeeccCCCCChh
Q 002544 48 IFVWLLRDFYLDLVEDNRKITPRDYLEIALRP----------VQGSGRDIAAKNEIRDSIRALFPDRECFTLVRPLSNEN 117 (910)
Q Consensus 48 ~f~WlvRDf~l~l~~~g~~it~~eyLe~~L~~----------~~g~~~~~~~~n~~R~~i~~~F~~~~cf~l~~P~~~~~ 117 (910)
-++||+||++- .||-+-|+.+|.. .|...+ | ..|-.||. .....|+|-..
T Consensus 163 ~LlFVIRD~~~--------~TplenLe~~l~~dlqkIW~sl~KPe~~e-----~---s~l~DfFd-v~~v~Ls~~~~--- 222 (772)
T KOG2203|consen 163 LLLFVIRDKTG--------VTPLENLEDVLREDLQKIWDSLSKPEGHE-----N---SPLNDFFD-VEFVGLSHKEL--- 222 (772)
T ss_pred EEEEEEecccC--------CCchHHhhHHHHHHHHHHHHhcCCccccc-----C---Cchhhhhc-eeeeecchHHH---
Confidence 48999999973 5787888777642 111111 1 12334442 33333333221
Q ss_pred hhccccCCCcCCCcHHHHHHHHHHHHHHhcc-CCCcccCC---cccChHHHHHHHHHHHHHhcCCCCCCccchHHHHHHH
Q 002544 118 ELQRLDQISLDRLRPEFRAGLDALTKFVFER-TRPKQVGA---TVLTGPVLIGITESYLDAINNGAVPTISSSWQSVEEA 193 (910)
Q Consensus 118 ~l~~l~~~~~~~L~~eF~~~~~~l~~~i~~~-~~pK~i~G---~~ltg~~l~~l~~~yv~ain~g~vP~i~sa~~~~~~~ 193 (910)
=...|.++|..|+...+.+ ..|=.++| ..|-...|.-+.+..=+.|..+.=-.++.-=..+|..
T Consensus 223 ------------kedqF~e~V~~LrqrFv~s~~s~~~f~~d~~~~iPadGfs~~a~qiWd~Ie~NKDLDLPtqqvlvAt~ 290 (772)
T KOG2203|consen 223 ------------KEDQFKEQVASLRQRFVHSGISPYGFAGDYHGVIPADGFSFYAEQIWDVIEENKDLDLPTQQVLVATV 290 (772)
T ss_pred ------------HHHHHHHHHHHHHHHHHhcCCCCCccccccCCcccccchhhhHHHHHHHHHhCcCCCCchhhhHHhhh
Confidence 1357999999999766654 77766655 3566677888899999999886533333334567788
Q ss_pred HHHHHHHHHHHHHHh
Q 002544 194 ECRRAYDSATETYMS 208 (910)
Q Consensus 194 e~~~a~~~A~~~Y~~ 208 (910)
.|.....+++..|-.
T Consensus 291 rceEIanE~~e~fit 305 (772)
T KOG2203|consen 291 RCEEIANEKLEEFIT 305 (772)
T ss_pred hHHHHHHHHHHHhhh
Confidence 898888888887754
No 144
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=95.31 E-value=5 Score=46.33 Aligned_cols=17 Identities=18% Similarity=0.261 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 002544 710 ALLEARVEEREKEIESL 726 (910)
Q Consensus 710 ~elE~rl~e~eee~e~l 726 (910)
..+...+......++.+
T Consensus 249 ~~~~~~l~~~~~~l~~~ 265 (423)
T TIGR01843 249 TEAQARLAELRERLNKA 265 (423)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34445555555555554
No 145
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=95.31 E-value=13 Score=47.85 Aligned_cols=34 Identities=3% Similarity=-0.130 Sum_probs=24.8
Q ss_pred ccChHHHHHHHHHHHHHhcCCCCCCccchHHHHH
Q 002544 158 VLTGPVLIGITESYLDAINNGAVPTISSSWQSVE 191 (910)
Q Consensus 158 ~ltg~~l~~l~~~yv~ain~g~vP~i~sa~~~~~ 191 (910)
..+|...-.+++....-++-+++|.+++.-...-
T Consensus 359 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 392 (1294)
T KOG0962|consen 359 QELKRQRDSLIQELAHQYQLDSVESLEFMAEVKK 392 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccccchHHHHHH
Confidence 4566677777777888888889998886655443
No 146
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=95.26 E-value=5.8 Score=43.38 Aligned_cols=99 Identities=24% Similarity=0.295 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 002544 625 FEEVQERCKVAEKEAKKATELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESELE 704 (910)
Q Consensus 625 ~eE~e~~l~~~e~e~~~~~~~~e~l~~e~~~~~~e~~e~~r~~~e~~~~ie~~~~~ie~Le~e~~~Le~Ele~~~~~~~~ 704 (910)
++.++.++..++.+-..++.....+..+....... -+..+.+.-.++..+..++..|..++.+-..+..+...+...
T Consensus 162 le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~Eek---EqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~ 238 (306)
T PF04849_consen 162 LEALQEKLKSLEEENEQLRSEASQLKTETDTYEEK---EQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITS 238 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHH---HHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444333332221111 111234566666667777777777766666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 002544 705 ALSKVALLEARVEEREKEIESL 726 (910)
Q Consensus 705 ~~~~~~elE~rl~e~eee~e~l 726 (910)
+.+.+..++.+++..-.+-+.+
T Consensus 239 LlsqivdlQ~r~k~~~~EnEeL 260 (306)
T PF04849_consen 239 LLSQIVDLQQRCKQLAAENEEL 260 (306)
T ss_pred HHHHHHHHHHHHHHHhhhHHHH
Confidence 6666667777777666666666
No 147
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.24 E-value=7.9 Score=44.79 Aligned_cols=57 Identities=18% Similarity=0.339 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 670 RMAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSKVALLEARVEEREKEIESL 726 (910)
Q Consensus 670 ~~~~ie~~~~~ie~Le~e~~~Le~Ele~~~~~~~~~~~~~~elE~rl~e~eee~e~l 726 (910)
...+|..+..++...++++.-+...+.+....+......+...-.++.-+-+.+..+
T Consensus 316 ~iseiqkLkqqL~smErek~~l~anL~dtqt~le~T~~~l~~~~er~~~l~e~v~al 372 (772)
T KOG0999|consen 316 NISEIQKLKQQLMSMEREKAELLANLQDTQTQLEHTEGDLMEQRERVDRLTEHVQAL 372 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhccchhHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666666666666655554444333444444444444445444
No 148
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=95.19 E-value=5.7 Score=45.91 Aligned_cols=24 Identities=17% Similarity=0.147 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 738 VKKLEDLLESERRSRAAANAMAER 761 (910)
Q Consensus 738 i~~Le~~le~e~~~~~ea~~r~e~ 761 (910)
+..+...+......+..+...++.
T Consensus 248 l~~~~~~l~~~~~~l~~~~~~l~~ 271 (423)
T TIGR01843 248 LTEAQARLAELRERLNKARDRLQR 271 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344444444444444444444444
No 149
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=95.06 E-value=12 Score=46.07 Aligned_cols=10 Identities=30% Similarity=0.614 Sum_probs=3.5
Q ss_pred HHHHHHHHHH
Q 002544 674 IERVQRQIES 683 (910)
Q Consensus 674 ie~~~~~ie~ 683 (910)
++.+..++..
T Consensus 451 ~~~~~~~i~~ 460 (650)
T TIGR03185 451 LETLKEAIEA 460 (650)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 150
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=95.05 E-value=6.6 Score=42.92 Aligned_cols=107 Identities=17% Similarity=0.244 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 520 QQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQS 599 (910)
Q Consensus 520 q~~~~~~~~E~~~~~~ele~ei~~~~~kl~~~e~ei~~l~~~lee~~~ki~~le~e~~~L~~el~dL~~~le~~~~~~~~ 599 (910)
..++..+..++-.++..+..+|..+...+.....+....++++..+.+++-.++...+.+-.+-++|...+. .
T Consensus 194 EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~-------~ 266 (306)
T PF04849_consen 194 EEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQ-------A 266 (306)
T ss_pred cHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH-------H
Confidence 333444444444444444444444444444333333333333333333333333333333333333333333 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 600 FEREARIMEQDKVYLEQKYKSEFERFEEVQERCK 633 (910)
Q Consensus 600 lEk~~~~Le~e~~el~~~l~e~~~~~eE~e~~l~ 633 (910)
.......|..++.++++++.+...-+.+++.++.
T Consensus 267 ske~Q~~L~aEL~elqdkY~E~~~mL~EaQEElk 300 (306)
T PF04849_consen 267 SKESQRQLQAELQELQDKYAECMAMLHEAQEELK 300 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555666654444444444444443
No 151
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=94.98 E-value=5.3 Score=41.42 Aligned_cols=55 Identities=20% Similarity=0.269 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 534 LAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSE 588 (910)
Q Consensus 534 ~~ele~ei~~~~~kl~~~e~ei~~l~~~lee~~~ki~~le~e~~~L~~el~dL~~ 588 (910)
+..+.+++.+++.+....+..+.++..+...+..-+..+..++..|+..+.....
T Consensus 29 IksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~k 83 (201)
T PF13851_consen 29 IKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEK 83 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555555555555555555555555555554433
No 152
>PRK10698 phage shock protein PspA; Provisional
Probab=94.97 E-value=5.8 Score=41.83 Aligned_cols=86 Identities=13% Similarity=0.234 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H----HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 002544 413 NISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTK----Q----KAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQ 484 (910)
Q Consensus 413 ~~~Le~e~~~L~~qle~~k~e~~~~kkk~Ee~~~e----~----~~~k~kl~~eleel~~~~ee~e~~~~~le~~~~~~q 484 (910)
+...-.....+.++++.....+.+|..+.+.++.. + =..+..+...+..|+.+++.....+..+...+..++
T Consensus 47 lA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~EdLAr~AL~~K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~ 126 (222)
T PRK10698 47 SARALAEKKQLTRRIEQAEAQQVEWQEKAELALRKEKEDLARAALIEKQKLTDLIATLEHEVTLVDETLARMKKEIGELE 126 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445556667777777788888887766631 1 012444667788888888888888888888888888
Q ss_pred HHHHHHHHHHHHHH
Q 002544 485 EEVEEWKRKYGVAV 498 (910)
Q Consensus 485 ~Elee~~~k~e~~~ 498 (910)
..+.+++.+.+.-.
T Consensus 127 ~ki~eak~k~~~L~ 140 (222)
T PRK10698 127 NKLSETRARQQALM 140 (222)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888877754
No 153
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=94.80 E-value=7.4 Score=42.19 Aligned_cols=62 Identities=18% Similarity=0.215 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 534 LAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNA 595 (910)
Q Consensus 534 ~~ele~ei~~~~~kl~~~e~ei~~l~~~lee~~~ki~~le~e~~~L~~el~dL~~~le~~~~ 595 (910)
+..+..++..+..+..........+....+....+...+...+..+...|.++..++...+.
T Consensus 54 l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~l~~ 115 (264)
T PF06008_consen 54 LESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQELIEQVESLNE 115 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 44444444444444444444444444444444444444444444444444444444444333
No 154
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=94.79 E-value=7.2 Score=49.02 Aligned_cols=32 Identities=13% Similarity=0.250 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 546 TKIEHAEQCLTTLRLELKAAESKMRSYEVEIS 577 (910)
Q Consensus 546 ~kl~~~e~ei~~l~~~lee~~~ki~~le~e~~ 577 (910)
.-..-+..++..++.++..++.++..+.....
T Consensus 194 ~a~~~L~~ql~~l~~~l~~aE~~l~~fk~~~~ 225 (754)
T TIGR01005 194 AAADFLAPEIADLSKQSRDAEAEVAAYRAQSD 225 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 33344566677777777777777777776543
No 155
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=94.66 E-value=13 Score=44.39 Aligned_cols=28 Identities=25% Similarity=0.534 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 002544 350 GSERSSLMLKYRSIEDNMKLLKKQLEDS 377 (910)
Q Consensus 350 eke~~~L~~e~~~le~e~e~l~k~lee~ 377 (910)
..+...+...+..++.++..+...+.++
T Consensus 108 ~~e~a~lk~~l~e~~~El~~l~~~l~~l 135 (511)
T PF09787_consen 108 SSELAVLKIRLQELDQELRRLRRQLEEL 135 (511)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555666666666666665555
No 156
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=94.65 E-value=5.4 Score=40.00 Aligned_cols=30 Identities=23% Similarity=0.236 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 002544 452 EDQVCSEIEVLKSRSTAAEARLAAAREQAL 481 (910)
Q Consensus 452 k~kl~~eleel~~~~ee~e~~~~~le~~~~ 481 (910)
...+..+..++..++..++.+|+-|++++.
T Consensus 52 ~~e~~~q~~dl~~qL~aAEtRCslLEKQLe 81 (178)
T PF14073_consen 52 HQELSKQNQDLSSQLSAAETRCSLLEKQLE 81 (178)
T ss_pred cchhhhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455577888888888888888887764
No 157
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=94.60 E-value=8.5 Score=42.02 Aligned_cols=65 Identities=18% Similarity=0.272 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 555 LTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVN-AKAQSFEREARIMEQDKVYLEQKYK 619 (910)
Q Consensus 555 i~~l~~~lee~~~ki~~le~e~~~L~~el~dL~~~le~~~-~~~~~lEk~~~~Le~e~~el~~~l~ 619 (910)
+..|...+..+......+......|..+.-++...++... .-+..|.++...|..++..|+.++.
T Consensus 137 V~kL~k~i~~Le~e~~~~q~~le~Lr~EKVdlEn~LE~EQE~lvN~L~Kqm~~l~~eKr~Lq~~l~ 202 (310)
T PF09755_consen 137 VNKLQKKIERLEKEKSAKQEELERLRREKVDLENTLEQEQEALVNRLWKQMDKLEAEKRRLQEKLE 202 (310)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3444444444444444444455555555555555555433 3456677777777777777777654
No 158
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=94.47 E-value=14 Score=44.04 Aligned_cols=17 Identities=35% Similarity=0.636 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 002544 710 ALLEARVEEREKEIESL 726 (910)
Q Consensus 710 ~elE~rl~e~eee~e~l 726 (910)
..+..++.+++.++..+
T Consensus 358 s~~~~k~~~ke~E~q~l 374 (511)
T PF09787_consen 358 SPLQLKLKEKESEIQKL 374 (511)
T ss_pred ChHHHHHHHHHHHHHHH
Confidence 34555555666566555
No 159
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=94.29 E-value=12 Score=42.54 Aligned_cols=14 Identities=36% Similarity=0.795 Sum_probs=10.4
Q ss_pred ccCCCChHHHHHHH
Q 002544 316 SCHGPGKWQKLATF 329 (910)
Q Consensus 316 ~~~gp~k~~~l~~f 329 (910)
.|.||--|.++-.+
T Consensus 185 sAI~ph~Wp~iLgM 198 (622)
T COG5185 185 SAIGPHNWPKILGM 198 (622)
T ss_pred hccCCcchHHHHHH
Confidence 46799999886533
No 160
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=94.23 E-value=7.9 Score=40.14 Aligned_cols=57 Identities=19% Similarity=0.351 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 382 SEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWK 438 (910)
Q Consensus 382 ~e~~k~le~~i~el~~~lee~~~~~~~l~~~~~~Le~e~~~L~~qle~~k~e~~~~k 438 (910)
-++++++.++|.+++...+...+....+..+...|..-+..+..++..++.++..+.
T Consensus 26 L~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~ 82 (201)
T PF13851_consen 26 LELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYE 82 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 335677777777777766666666666666666666666666666665555555443
No 161
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=93.93 E-value=17 Score=43.29 Aligned_cols=16 Identities=13% Similarity=0.154 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 002544 576 ISSQKLETKELSEKLE 591 (910)
Q Consensus 576 ~~~L~~el~dL~~~le 591 (910)
+..++.++..+...+.
T Consensus 256 l~~l~~~l~~l~~~y~ 271 (498)
T TIGR03007 256 IEALEKQLDALRLRYT 271 (498)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 3333333333333333
No 162
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=93.89 E-value=13 Score=41.20 Aligned_cols=35 Identities=26% Similarity=0.400 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 002544 667 AMERMAVIERVQRQIESLERQKTDLTNEVNRIRES 701 (910)
Q Consensus 667 ~~e~~~~ie~~~~~ie~Le~e~~~Le~Ele~~~~~ 701 (910)
...+..+++.++.++..|++.+..+..|.+++..+
T Consensus 128 re~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~E 162 (319)
T PF09789_consen 128 REDLVEQLEKLREQIEQLERDLQSLLDEKEELVTE 162 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666666666666666666555544
No 163
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=93.84 E-value=17 Score=42.51 Aligned_cols=19 Identities=16% Similarity=0.200 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 002544 599 SFEREARIMEQDKVYLEQK 617 (910)
Q Consensus 599 ~lEk~~~~Le~e~~el~~~ 617 (910)
.+..++..++.++.++...
T Consensus 258 ~l~~~l~~le~~l~~l~~~ 276 (444)
T TIGR03017 258 NLKTDIARAESKLAELSQR 276 (444)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444333
No 164
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=93.65 E-value=36 Score=45.70 Aligned_cols=83 Identities=16% Similarity=0.222 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 575 EISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQ--KYKSEFERFEEVQERCKVAEKEAKKATELADRERAE 652 (910)
Q Consensus 575 e~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~e~~el~~--~l~e~~~~~eE~e~~l~~~e~e~~~~~~~~e~l~~e 652 (910)
.+..|..+|..+..++..+...+..+...+..|..+...+-. .+......+......+..+..++..+...+......
T Consensus 743 ri~el~~~IaeL~~~i~~l~~~l~~l~~r~~~L~~e~~~~Ps~~dL~~A~~~l~~A~~~~~~a~~~l~~a~~~l~~a~~~ 822 (1353)
T TIGR02680 743 RIAELDARLAAVDDELAELARELRALGARQRALADELAGAPSDRSLRAAHRRAAEAERQAESAERELARAARKAAAAAAA 822 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444333211 112222333444444444444444444444444444
Q ss_pred HHHHH
Q 002544 653 AAAAR 657 (910)
Q Consensus 653 ~~~~~ 657 (910)
+..+.
T Consensus 823 ~~~a~ 827 (1353)
T TIGR02680 823 WKQAR 827 (1353)
T ss_pred HHHHH
Confidence 33333
No 165
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=93.54 E-value=11 Score=39.53 Aligned_cols=80 Identities=20% Similarity=0.299 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 418 EKSSSLSKTVDSLKNEISDWKRKYDQVLTK--------QKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEE 489 (910)
Q Consensus 418 ~e~~~L~~qle~~k~e~~~~kkk~Ee~~~e--------~~~~k~kl~~eleel~~~~ee~e~~~~~le~~~~~~q~Elee 489 (910)
.....+.++++.+...+..|..+...++.. .=..+..+..++..++..+.........+...+..+...+.+
T Consensus 51 a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e 130 (221)
T PF04012_consen 51 ANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLAREALQRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEE 130 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344445555555555555555544421 111234445555666666666666666666666666666666
Q ss_pred HHHHHHHH
Q 002544 490 WKRKYGVA 497 (910)
Q Consensus 490 ~~~k~e~~ 497 (910)
++.+.+..
T Consensus 131 ~k~k~~~l 138 (221)
T PF04012_consen 131 LKSKREEL 138 (221)
T ss_pred HHHHHHHH
Confidence 66555553
No 166
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=93.53 E-value=1.4 Score=44.96 Aligned_cols=84 Identities=18% Similarity=0.218 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 554 CLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCK 633 (910)
Q Consensus 554 ei~~l~~~lee~~~ki~~le~e~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~e~~el~~~l~e~~~~~eE~e~~l~ 633 (910)
.+.+++..+++...++..+.+++..|-.++.+++..+++.+..+..++.....|+..+..+...+..+..+++++...++
T Consensus 129 ~~~d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~~E 208 (290)
T COG4026 129 EYMDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPGVE 208 (290)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhccccc
Confidence 35577788888888888888888888888888888888888888888888888888888887777777777777776665
Q ss_pred HHHH
Q 002544 634 VAEK 637 (910)
Q Consensus 634 ~~e~ 637 (910)
-.+.
T Consensus 209 l~e~ 212 (290)
T COG4026 209 LPEE 212 (290)
T ss_pred chHH
Confidence 5543
No 167
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=93.44 E-value=6.3 Score=42.24 Aligned_cols=63 Identities=25% Similarity=0.367 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 555 LTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQK 617 (910)
Q Consensus 555 i~~l~~~lee~~~ki~~le~e~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~e~~el~~~ 617 (910)
....+..|......+..|......++.+-..|......+......|.........+...|...
T Consensus 21 ~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e 83 (246)
T PF00769_consen 21 MRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQE 83 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444444444444444444444444433
No 168
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=93.30 E-value=14 Score=40.24 Aligned_cols=68 Identities=12% Similarity=0.138 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 555 LTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEF 622 (910)
Q Consensus 555 i~~l~~~lee~~~ki~~le~e~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~e~~el~~~l~e~~ 622 (910)
+....+.+++-+.....+......|..++-.+..-+-..+...+.+|.-++.++.+...++-++++..
T Consensus 87 lr~i~es~~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~ 154 (401)
T PF06785_consen 87 LRKIRESVEERQQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQ 154 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 33444445555555555666666666666666666666667777777777777777666666544333
No 169
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=93.26 E-value=10 Score=45.38 Aligned_cols=41 Identities=20% Similarity=0.382 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 737 TVKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKLDEMQ 777 (910)
Q Consensus 737 ~i~~Le~~le~e~~~~~ea~~r~e~l~~ql~~~k~~i~~l~ 777 (910)
.++.|..+++...+.+.+.....+.+..-++.+.+.++.+.
T Consensus 217 ~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~ 257 (916)
T KOG0249|consen 217 DKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLR 257 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 34445555555555555555555555554445544444443
No 170
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=93.20 E-value=20 Score=41.41 Aligned_cols=98 Identities=17% Similarity=0.255 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 538 EEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQK 617 (910)
Q Consensus 538 e~ei~~~~~kl~~~e~ei~~l~~~lee~~~ki~~le~e~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~e~~el~~~ 617 (910)
..++.+...++.....+|.....++....+.+..|...+..++..+..+..+.+....-+..+....+.+..++.+++++
T Consensus 204 ~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDk 283 (596)
T KOG4360|consen 204 VKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDK 283 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 33444444444444455555555555555555666666666666666666666666666666677777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 002544 618 YKSEFERFEEVQERCKVA 635 (910)
Q Consensus 618 l~e~~~~~eE~e~~l~~~ 635 (910)
+.+....++|.+.+++.+
T Consensus 284 yAE~m~~~~EaeeELk~l 301 (596)
T KOG4360|consen 284 YAECMQMLHEAEEELKCL 301 (596)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 666666666666555554
No 171
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=93.18 E-value=5.5 Score=37.64 Aligned_cols=42 Identities=21% Similarity=0.271 Sum_probs=23.0
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 455 VCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGV 496 (910)
Q Consensus 455 l~~eleel~~~~ee~e~~~~~le~~~~~~q~Elee~~~k~e~ 496 (910)
+..++.++..+++.+-.-+..-.+....++..+.|++.-|..
T Consensus 73 L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~myr~ 114 (120)
T PF12325_consen 73 LEQELEELQQRYQTLLELLGEKSEEVEELRADVQDLKEMYRE 114 (120)
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555554555555555566666666655554
No 172
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=92.96 E-value=32 Score=43.12 Aligned_cols=19 Identities=26% Similarity=0.501 Sum_probs=11.3
Q ss_pred CCCcHHHHHHHHHHHHHHh
Q 002544 128 DRLRPEFRAGLDALTKFVF 146 (910)
Q Consensus 128 ~~L~~eF~~~~~~l~~~i~ 146 (910)
.+|...|--|+++||.++-
T Consensus 130 ~elv~~fNIQi~NLCqFLp 148 (1072)
T KOG0979|consen 130 EELVAHFNIQIDNLCQFLP 148 (1072)
T ss_pred HHHHHHHhcccCchhhhcc
Confidence 3455556666666666654
No 173
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=92.92 E-value=12 Score=37.98 Aligned_cols=63 Identities=22% Similarity=0.258 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 576 ISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKE 638 (910)
Q Consensus 576 ~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~e~~el~~~l~e~~~~~eE~e~~l~~~e~e 638 (910)
-..|+.+...+...+++-+..+..+.......-.-+.++++++.........+..++......
T Consensus 44 FeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~ 106 (177)
T PF13870_consen 44 FEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEE 106 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455555555555555555555555555555555444444444444444443333
No 174
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=92.76 E-value=14 Score=38.59 Aligned_cols=10 Identities=30% Similarity=0.122 Sum_probs=6.5
Q ss_pred ccCCCCCCCC
Q 002544 829 KRSRSTTSPL 838 (910)
Q Consensus 829 ~~~~~~~~~~ 838 (910)
|+++|+..|+
T Consensus 299 k~~rs~si~~ 308 (333)
T KOG1853|consen 299 KVERSDSILS 308 (333)
T ss_pred cccccCcccc
Confidence 7777765553
No 175
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=92.59 E-value=2.8 Score=35.79 Aligned_cols=67 Identities=21% Similarity=0.343 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 561 ELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEE 627 (910)
Q Consensus 561 ~lee~~~ki~~le~e~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~e~~el~~~l~e~~~~~eE 627 (910)
.++.++.++..+-.++..|+.++.+|..+..........|......|..+...++..+..+-.++++
T Consensus 5 ~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl~~ 71 (72)
T PF06005_consen 5 LLEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGKLEE 71 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 4566667777777777777777777777777777777777888888888888887776666555543
No 176
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=92.56 E-value=13 Score=37.46 Aligned_cols=80 Identities=18% Similarity=0.258 Sum_probs=51.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 353 RSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKN 432 (910)
Q Consensus 353 ~~~L~~e~~~le~e~e~l~k~lee~e~~~~e~~k~le~~i~el~~~lee~~~~~~~l~~~~~~Le~e~~~L~~qle~~k~ 432 (910)
++.|+.+|+.++=+-......+..+......|.+.++....+-...-.+......++..++++.+++|.-|.++|+-.+.
T Consensus 6 LK~LQeKIrrLELER~qAe~nl~~LS~et~~yk~vl~~~~~~~~~~~~e~~~q~~dl~~qL~aAEtRCslLEKQLeyMRk 85 (178)
T PF14073_consen 6 LKNLQEKIRRLELERSQAEDNLKQLSRETSHYKKVLQSEQNERERAHQELSKQNQDLSSQLSAAETRCSLLEKQLEYMRK 85 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHHHHHHhhhhhcccchhhhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666666666666666665555566666655544433444445556777788888888888888888875554
No 177
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=92.53 E-value=23 Score=40.44 Aligned_cols=119 Identities=14% Similarity=0.269 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 569 MRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADR 648 (910)
Q Consensus 569 i~~le~e~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~e~~el~~~l~e~~~~~eE~e~~l~~~e~e~~~~~~~~e~ 648 (910)
....++....|+.-+......+.+.+.....|.-+++.+....-.|++++-.+-......-..+-++ ...+..
T Consensus 385 Knd~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~~eiQqKnksvsqclEm-------dk~Lsk 457 (527)
T PF15066_consen 385 KNDIEKTLQNLQEALANTQKHLQESRNEKETLQLELKKIKANYVHLQERYMTEIQQKNKSVSQCLEM-------DKTLSK 457 (527)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHH-------HHHhhh
Confidence 3455566666666666666666666666666666666666666666666544433333332222222 222223
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 002544 649 ERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNR 697 (910)
Q Consensus 649 l~~e~~~~~~e~~e~~r~~~e~~~~ie~~~~~ie~Le~e~~~Le~Ele~ 697 (910)
...+++.++..+.++++. ....++.+.+..+..+.+...|+.|...
T Consensus 458 KeeeverLQ~lkgelEka---t~SALdlLkrEKe~~EqefLslqeEfQk 503 (527)
T PF15066_consen 458 KEEEVERLQQLKGELEKA---TTSALDLLKREKETREQEFLSLQEEFQK 503 (527)
T ss_pred hHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444421 1123444445555555555555555543
No 178
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=92.44 E-value=2.3 Score=43.86 Aligned_cols=25 Identities=20% Similarity=0.244 Sum_probs=3.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 557 TLRLELKAAESKMRSYEVEISSQKL 581 (910)
Q Consensus 557 ~l~~~lee~~~ki~~le~e~~~L~~ 581 (910)
.+...+..+...+......+..|+.
T Consensus 99 ~~~~~l~~l~~~~~~~~~~l~~l~~ 123 (194)
T PF08614_consen 99 ELNDELQELEKELSEKERRLAELEA 123 (194)
T ss_dssp ---------------HHHHHHHHHH
T ss_pred ccccccchhhhhHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 179
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=92.37 E-value=9.3 Score=36.10 Aligned_cols=23 Identities=22% Similarity=0.205 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 002544 568 KMRSYEVEISSQKLETKELSEKL 590 (910)
Q Consensus 568 ki~~le~e~~~L~~el~dL~~~l 590 (910)
.+..+...+..+..+|-.+....
T Consensus 38 el~~l~~~r~~l~~Eiv~l~~~~ 60 (120)
T PF12325_consen 38 ELARLEAERDELREEIVKLMEEN 60 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444433
No 180
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=92.23 E-value=7.8 Score=43.97 Aligned_cols=45 Identities=11% Similarity=0.160 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 399 ADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQ 443 (910)
Q Consensus 399 lee~~~~~~~l~~~~~~Le~e~~~L~~qle~~k~e~~~~kkk~Ee 443 (910)
.....+...+++.+...++.+...+.+.-..+.....-|+.++++
T Consensus 377 kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~ 421 (493)
T KOG0804|consen 377 KKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKE 421 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 333333444444444444444444333333334444445555443
No 181
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=92.09 E-value=35 Score=41.54 Aligned_cols=47 Identities=13% Similarity=0.073 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 571 SYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQK 617 (910)
Q Consensus 571 ~le~e~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~e~~el~~~ 617 (910)
+|..-...|+.++.+....++.+...-.+|-+-+..+..+-..+...
T Consensus 431 sLqSlN~~Lq~ql~es~k~~e~lq~kneellk~~e~q~~Enk~~~~~ 477 (861)
T PF15254_consen 431 SLQSLNMSLQNQLQESLKSQELLQSKNEELLKVIENQKEENKRLRKM 477 (861)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 33334445555555555555555555555555444444444444443
No 182
>PF13514 AAA_27: AAA domain
Probab=92.06 E-value=52 Score=43.40 Aligned_cols=15 Identities=27% Similarity=0.673 Sum_probs=8.5
Q ss_pred CCCCceeeccCCCCC
Q 002544 101 FPDRECFTLVRPLSN 115 (910)
Q Consensus 101 F~~~~cf~l~~P~~~ 115 (910)
||.+.-+-|.||..+
T Consensus 23 fp~r~~~~f~~p~~~ 37 (1111)
T PF13514_consen 23 FPTRSPYNFYHPKNG 37 (1111)
T ss_pred CCCCCCcccCCCCCC
Confidence 565655555666544
No 183
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=91.93 E-value=10 Score=42.83 Aligned_cols=13 Identities=23% Similarity=0.626 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHH
Q 002544 431 KNEISDWKRKYDQ 443 (910)
Q Consensus 431 k~e~~~~kkk~Ee 443 (910)
......|+..+|-
T Consensus 190 ~vd~~eWklEvER 202 (359)
T PF10498_consen 190 KVDPAEWKLEVER 202 (359)
T ss_pred cCCHHHHHHHHHH
Confidence 3456678766553
No 184
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=91.91 E-value=12 Score=39.99 Aligned_cols=21 Identities=33% Similarity=0.599 Sum_probs=10.6
Q ss_pred HHHHHHhcCchhhhhhccCCChH
Q 002544 874 LKQELTKHNFGAELLQLRNPNKK 896 (910)
Q Consensus 874 ~~~~~~~~~~~~~~~~~~~~~~~ 896 (910)
|++-|.. ...+|-.+|-++|.
T Consensus 187 lq~QL~~--L~~EL~~~kde~k~ 207 (246)
T PF00769_consen 187 LQEQLKE--LKSELEQLKDEEKQ 207 (246)
T ss_dssp HHHHHHH--HHHHHHTTB-CCG-
T ss_pred HHHHHHH--HHHHHHHHhhhhcc
Confidence 4444433 34566677766664
No 185
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=91.88 E-value=2.9 Score=43.13 Aligned_cols=16 Identities=19% Similarity=0.333 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 002544 579 QKLETKELSEKLEAVN 594 (910)
Q Consensus 579 L~~el~dL~~~le~~~ 594 (910)
+...+..+...+....
T Consensus 93 l~~~L~~~~~~l~~l~ 108 (194)
T PF08614_consen 93 LAQQLVELNDELQELE 108 (194)
T ss_dssp ----------------
T ss_pred ccccccccccccchhh
Confidence 3333333333333333
No 186
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=91.60 E-value=27 Score=39.14 Aligned_cols=16 Identities=6% Similarity=0.113 Sum_probs=6.0
Q ss_pred HHhhhHHHHHHHHHHH
Q 002544 462 LKSRSTAAEARLAAAR 477 (910)
Q Consensus 462 l~~~~ee~e~~~~~le 477 (910)
...-|.++...+....
T Consensus 73 y~~~c~EL~~~I~egr 88 (325)
T PF08317_consen 73 YQFSCRELKKYISEGR 88 (325)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 187
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=91.60 E-value=8.7 Score=47.57 Aligned_cols=40 Identities=20% Similarity=0.310 Sum_probs=15.6
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 457 SEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGV 496 (910)
Q Consensus 457 ~eleel~~~~ee~e~~~~~le~~~~~~q~Elee~~~k~e~ 496 (910)
..+.-|+.+.+..-..+..+...+..++...+.+..+|+.
T Consensus 565 ~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~ 604 (717)
T PF10168_consen 565 RRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEE 604 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333344444444444444444
No 188
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=91.55 E-value=21 Score=40.46 Aligned_cols=78 Identities=24% Similarity=0.296 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 557 TLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAE 636 (910)
Q Consensus 557 ~l~~~lee~~~ki~~le~e~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~e~~el~~~l~e~~~~~eE~e~~l~~~e 636 (910)
+|+..++........+..........|..+..++...-..+..-|+-+. .++..+-..|.....++.+++.+...+.
T Consensus 217 DWR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~iN---~qle~l~~eYr~~~~~ls~~~~~y~~~s 293 (359)
T PF10498_consen 217 DWRSHLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIESREKYIN---NQLEPLIQEYRSAQDELSEVQEKYKQAS 293 (359)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444444444444444444444444444444444444333333333332 3444444443333333444443333333
Q ss_pred H
Q 002544 637 K 637 (910)
Q Consensus 637 ~ 637 (910)
.
T Consensus 294 ~ 294 (359)
T PF10498_consen 294 E 294 (359)
T ss_pred h
Confidence 3
No 189
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=91.12 E-value=4 Score=45.39 Aligned_cols=9 Identities=33% Similarity=0.815 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 002544 691 LTNEVNRIR 699 (910)
Q Consensus 691 Le~Ele~~~ 699 (910)
....++.++
T Consensus 125 ~~~~L~~L~ 133 (314)
T PF04111_consen 125 ASNQLDRLR 133 (314)
T ss_dssp HHHHHHCHH
T ss_pred HHHHHHHHH
Confidence 333343333
No 190
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=91.07 E-value=22 Score=37.24 Aligned_cols=28 Identities=21% Similarity=0.400 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 694 EVNRIRESELEALSKVALLEARVEEREK 721 (910)
Q Consensus 694 Ele~~~~~~~~~~~~~~elE~rl~e~ee 721 (910)
-+++....+..+..+.+-||.++.+++.
T Consensus 134 sleDfeqrLnqAIErnAfLESELdEke~ 161 (333)
T KOG1853|consen 134 SLEDFEQRLNQAIERNAFLESELDEKEV 161 (333)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 3444444444444444445544444433
No 191
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=91.04 E-value=10 Score=44.78 Aligned_cols=28 Identities=11% Similarity=-0.005 Sum_probs=15.0
Q ss_pred HhccCCCcc----cCCcccChHHHHHHHHHHH
Q 002544 145 VFERTRPKQ----VGATVLTGPVLIGITESYL 172 (910)
Q Consensus 145 i~~~~~pK~----i~G~~ltg~~l~~l~~~yv 172 (910)
|+..++|++ +-|.+---..|-.|++.|-
T Consensus 72 il~~lP~~tkLVQVTg~~g~~~sL~~lArr~G 103 (652)
T COG2433 72 ILKRLPEGTKLVQVTGRPGEQESLWELARRHG 103 (652)
T ss_pred HHHhCCCCceEEEEeCCCCCcchHHHHHHHhC
Confidence 344555544 3344444446777777763
No 192
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=91.03 E-value=25 Score=38.45 Aligned_cols=57 Identities=14% Similarity=0.193 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 386 KRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYD 442 (910)
Q Consensus 386 k~le~~i~el~~~lee~~~~~~~l~~~~~~Le~e~~~L~~qle~~k~e~~~~kkk~E 442 (910)
..+|+-+..+..+-..++.++.++..++.+.+.+...|.+++.....-.......|.
T Consensus 130 q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq~L~~eyQ 186 (401)
T PF06785_consen 130 QHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQQELNDEYQ 186 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345555555555555566666666666666666666666666655444444444443
No 193
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=90.98 E-value=34 Score=39.17 Aligned_cols=68 Identities=21% Similarity=0.376 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 002544 402 YTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQA 480 (910)
Q Consensus 402 ~~~~~~~l~~~~~~Le~e~~~L~~qle~~k~e~~~~kkk~Ee~~~e~~~~k~kl~~eleel~~~~ee~e~~~~~le~~~ 480 (910)
....+..+..+.+.|..+..-+..-+...++..+.|--.++ +|+.+++....++..+.+..+.|..++
T Consensus 293 ~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~-----------kl~~eie~kEeei~~L~~~~d~L~~q~ 360 (622)
T COG5185 293 ISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLE-----------KLKSEIELKEEEIKALQSNIDELHKQL 360 (622)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHH-----------HHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 34455555556666666655555555555666666654433 344444444444444444444444444
No 194
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.89 E-value=34 Score=39.03 Aligned_cols=30 Identities=20% Similarity=0.275 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 555 LTTLRLELKAAESKMRSYEVEISSQKLETK 584 (910)
Q Consensus 555 i~~l~~~lee~~~ki~~le~e~~~L~~el~ 584 (910)
|.++...+..+.+.+++-+.....|..+++
T Consensus 347 IqeleqdL~a~~eei~~~eel~~~Lrsele 376 (521)
T KOG1937|consen 347 IQELEQDLEAVDEEIESNEELAEKLRSELE 376 (521)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 333334444444444433333334444333
No 195
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=90.85 E-value=24 Score=37.16 Aligned_cols=14 Identities=7% Similarity=0.050 Sum_probs=6.7
Q ss_pred CCCcchHHHHHHHH
Q 002544 294 SSDASIDNVVKVLD 307 (910)
Q Consensus 294 ~~~~~~~~~~~~~~ 307 (910)
.++|++..|....+
T Consensus 21 ~~~~n~~s~~dl~d 34 (330)
T KOG2991|consen 21 RASGNRRSFGDLED 34 (330)
T ss_pred cCCcchhhccCccc
Confidence 34555555544333
No 196
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=90.79 E-value=3 Score=35.76 Aligned_cols=64 Identities=20% Similarity=0.322 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 563 KAAESKMRSYEVEISSQKLETKELSEKLEAVNAK-------AQSFEREARIMEQDKVYLEQKYKSEFERFE 626 (910)
Q Consensus 563 ee~~~ki~~le~e~~~L~~el~dL~~~le~~~~~-------~~~lEk~~~~Le~e~~el~~~l~e~~~~~e 626 (910)
+.++.+|...-.++.-|+-+|++|..+-..+... ...|..+...+..+...|++++..+-.+++
T Consensus 7 eqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLGkm~ 77 (79)
T PRK15422 7 EKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRME 77 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3444455555555555555555555544444444 444777777777777777777666555554
No 197
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.03 E-value=31 Score=37.13 Aligned_cols=44 Identities=18% Similarity=0.452 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 399 ADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYD 442 (910)
Q Consensus 399 lee~~~~~~~l~~~~~~Le~e~~~L~~qle~~k~e~~~~kkk~E 442 (910)
+......++.++..+..++.+++.|..+++.+..++...+.+.+
T Consensus 33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~ 76 (265)
T COG3883 33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEID 76 (265)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666666666666666666666666666666655554433
No 198
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=89.83 E-value=31 Score=36.83 Aligned_cols=54 Identities=22% Similarity=0.279 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhh
Q 002544 735 ASTVKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKLDEMQQELTKARLNET 788 (910)
Q Consensus 735 ~~~i~~Le~~le~e~~~~~ea~~r~e~l~~ql~~~k~~i~~l~~e~~~~~~~~~ 788 (910)
..++..++.++.....-..-...+.+-+..++..++..+..++..+...|..++
T Consensus 163 ~~~~~~le~el~s~~~rq~L~~~qrdl~~~~~~~l~~~l~~Lq~~ln~~R~~ea 216 (240)
T PF12795_consen 163 EAQIEMLEQELLSNNNRQELLQLQRDLLKARIQRLQQQLQALQNLLNQKRRQEA 216 (240)
T ss_pred HHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555554444444444455566677777888888888888888887776
No 199
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=89.65 E-value=36 Score=37.36 Aligned_cols=35 Identities=11% Similarity=0.088 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 403 TSRINNLQGENISLREKSSSLSKTVDSLKNEISDW 437 (910)
Q Consensus 403 ~~~~~~l~~~~~~Le~e~~~L~~qle~~k~e~~~~ 437 (910)
......+..+......++..|...+..++...-.+
T Consensus 33 ~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~ 67 (310)
T PF09755_consen 33 QQENRVLKRELETEKARCKHLQEENRALREASVRI 67 (310)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333334444444444444444443333
No 200
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=89.65 E-value=7.5 Score=43.25 Aligned_cols=20 Identities=15% Similarity=0.145 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 002544 668 MERMAVIERVQRQIESLERQ 687 (910)
Q Consensus 668 ~e~~~~ie~~~~~ie~Le~e 687 (910)
..+..++.-...+++.|.+.
T Consensus 116 ~sl~~q~~~~~~~L~~L~kt 135 (314)
T PF04111_consen 116 DSLKNQYEYASNQLDRLRKT 135 (314)
T ss_dssp HHHHHHHHHHHHHHHCHHT-
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 33344444444555555444
No 201
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=89.40 E-value=22 Score=37.88 Aligned_cols=114 Identities=14% Similarity=0.210 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 560 LELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEA 639 (910)
Q Consensus 560 ~~lee~~~ki~~le~e~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~e~~el~~~l~e~~~~~eE~e~~l~~~e~e~ 639 (910)
..+.+++..++.|.+++..-+-+|+.|+.-+......+.+-......|..+...|-+.++.++..-+.+...+...+
T Consensus 18 qKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke--- 94 (307)
T PF10481_consen 18 QKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKE--- 94 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhH---
Confidence 35666777777888888888888888887777777666666666666666666655543333333332222222221
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 002544 640 KKATELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRES 701 (910)
Q Consensus 640 ~~~~~~~e~l~~e~~~~~~e~~e~~r~~~e~~~~ie~~~~~ie~Le~e~~~Le~Ele~~~~~ 701 (910)
..+.-++.++..+..+++.|+.++.++..++++....
T Consensus 95 -------------------------~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~ 131 (307)
T PF10481_consen 95 -------------------------SQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQA 131 (307)
T ss_pred -------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1233344555666667777777777777777766654
No 202
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=89.27 E-value=20 Score=38.35 Aligned_cols=75 Identities=29% Similarity=0.388 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 552 EQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQER 631 (910)
Q Consensus 552 e~ei~~l~~~lee~~~ki~~le~e~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~e~~el~~~l~e~~~~~eE~e~~ 631 (910)
+..|..|+..|.+.++++..-+.+|..|+.+|..+.+++-+. ++.++ |++-.
T Consensus 67 EV~iRHLkakLkes~~~l~dRetEI~eLksQL~RMrEDWIEE---------------------------ECHRV-EAQLA 118 (305)
T PF15290_consen 67 EVCIRHLKAKLKESENRLHDRETEIDELKSQLARMREDWIEE---------------------------ECHRV-EAQLA 118 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH---------------------------HHHHH-HHHHH
Confidence 334445555555555555555555555555555444444322 22222 34445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 002544 632 CKVAEKEAKKATELADRERAEAA 654 (910)
Q Consensus 632 l~~~e~e~~~~~~~~e~l~~e~~ 654 (910)
|+++.+++++++..++.++..+.
T Consensus 119 LKEARkEIkQLkQvieTmrssL~ 141 (305)
T PF15290_consen 119 LKEARKEIKQLKQVIETMRSSLA 141 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhc
Confidence 55666666666666665555543
No 203
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=89.19 E-value=33 Score=36.26 Aligned_cols=102 Identities=12% Similarity=0.167 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHH
Q 002544 388 YDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLT--------KQKAMEDQVCSEI 459 (910)
Q Consensus 388 le~~i~el~~~lee~~~~~~~l~~~~~~Le~e~~~L~~qle~~k~e~~~~kkk~Ee~~~--------e~~~~k~kl~~el 459 (910)
++..|.++...+....+.+..+......++. +++.+.....+|..+...++. +.=..+..+...+
T Consensus 29 l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~-------~~~~~~~~~~k~e~~A~~Al~~g~E~LAr~al~~~~~le~~~ 101 (225)
T COG1842 29 LEQAIRDMESELAKARQALAQAIARQKQLER-------KLEEAQARAEKLEEKAELALQAGNEDLAREALEEKQSLEDLA 101 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444 344444444444444443331 1112244445555
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 460 EVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGV 496 (910)
Q Consensus 460 eel~~~~ee~e~~~~~le~~~~~~q~Elee~~~k~e~ 496 (910)
..+...+..+......+......+...+.+++.+.+.
T Consensus 102 ~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~ 138 (225)
T COG1842 102 KALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEA 138 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555556666666666666666655544444
No 204
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=89.17 E-value=51 Score=38.48 Aligned_cols=16 Identities=6% Similarity=0.171 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 002544 539 EEMKEKATKIEHAEQC 554 (910)
Q Consensus 539 ~ei~~~~~kl~~~e~e 554 (910)
.++..++.++...+..
T Consensus 178 ~ql~~~~~~l~~ae~~ 193 (444)
T TIGR03017 178 QQIAALREDLARAQSK 193 (444)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 205
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=88.79 E-value=34 Score=35.92 Aligned_cols=37 Identities=8% Similarity=0.101 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 577 SSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVY 613 (910)
Q Consensus 577 ~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~e~~e 613 (910)
..|..-|.++...+..++..+...-...+.++.++..
T Consensus 26 ~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~ 62 (221)
T PF04012_consen 26 KMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDE 62 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444433333333
No 206
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=88.78 E-value=63 Score=39.06 Aligned_cols=36 Identities=19% Similarity=0.286 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 002544 452 EDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEV 487 (910)
Q Consensus 452 k~kl~~eleel~~~~ee~e~~~~~le~~~~~~q~El 487 (910)
+.+++..+-+...+..+.+.++..++.....++.+-
T Consensus 51 ~~~lq~~~~e~~aqk~d~E~ritt~e~rflnaqre~ 86 (916)
T KOG0249|consen 51 NTKLQRDIREAMAQKEDMEERITTLEKRFLNAQRES 86 (916)
T ss_pred HHHHhhhhhhHHhhhcccccccchHHHHHHhccCCC
Confidence 444555555556666666666666666665555543
No 207
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=88.77 E-value=64 Score=39.10 Aligned_cols=10 Identities=20% Similarity=0.145 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q 002544 737 TVKKLEDLLE 746 (910)
Q Consensus 737 ~i~~Le~~le 746 (910)
++..+...|-
T Consensus 361 ~l~~~a~~Ls 370 (563)
T TIGR00634 361 ELDKAAVALS 370 (563)
T ss_pred HHHHHHHHHH
Confidence 3333433333
No 208
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=88.71 E-value=9.2 Score=45.15 Aligned_cols=35 Identities=23% Similarity=0.334 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 601 EREARIMEQDKVYLEQKYKSEFERFEEVQERCKVA 635 (910)
Q Consensus 601 Ek~~~~Le~e~~el~~~l~e~~~~~eE~e~~l~~~ 635 (910)
.++++.++.++..|+..+.+...+.++++..+..+
T Consensus 473 ~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l 507 (652)
T COG2433 473 DREIRARDRRIERLEKELEEKKKRVEELERKLAEL 507 (652)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555444444555555554444
No 209
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=88.56 E-value=28 Score=34.66 Aligned_cols=43 Identities=19% Similarity=0.207 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 571 SYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVY 613 (910)
Q Consensus 571 ~le~e~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~e~~e 613 (910)
....+...++.+|.++...+...-..+..|+..-+.....+.+
T Consensus 24 ~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~e 66 (159)
T PF05384_consen 24 QARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAE 66 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444444444333
No 210
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=88.18 E-value=34 Score=35.24 Aligned_cols=16 Identities=38% Similarity=0.574 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 002544 365 DNMKLLKKQLEDSERY 380 (910)
Q Consensus 365 ~e~e~l~k~lee~e~~ 380 (910)
++|..|+.++-++...
T Consensus 10 GEIsLLKqQLke~q~E 25 (202)
T PF06818_consen 10 GEISLLKQQLKESQAE 25 (202)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 3444555555554443
No 211
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=88.11 E-value=38 Score=35.64 Aligned_cols=83 Identities=20% Similarity=0.290 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 002544 413 NISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTK--------QKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQ 484 (910)
Q Consensus 413 ~~~Le~e~~~L~~qle~~k~e~~~~kkk~Ee~~~e--------~~~~k~kl~~eleel~~~~ee~e~~~~~le~~~~~~q 484 (910)
+...-.....+.++++.....+.+|..+...++.. .=..+......+..+..++......+..+...+..++
T Consensus 47 lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr~Al~~k~~~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~ 126 (219)
T TIGR02977 47 SARTIADKKELERRVSRLEAQVADWQEKAELALSKGREDLARAALIEKQKAQELAEALERELAAVEETLAKLQEDIAKLQ 126 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444445556666666677777666655521 0012333344555555555555555555555555555
Q ss_pred HHHHHHHHHHH
Q 002544 485 EEVEEWKRKYG 495 (910)
Q Consensus 485 ~Elee~~~k~e 495 (910)
..+.+++.+-+
T Consensus 127 ~ki~~~k~k~~ 137 (219)
T TIGR02977 127 AKLAEARARQK 137 (219)
T ss_pred HHHHHHHHHHH
Confidence 55555554444
No 212
>KOG3478 consensus Prefoldin subunit 6, KE2 family [Posttranslational modification, protein turnover, chaperones]
Probab=87.83 E-value=17 Score=33.24 Aligned_cols=48 Identities=21% Similarity=0.293 Sum_probs=40.4
Q ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 002544 738 VKKLEDLL--ESERRSRAAANAMAERLSLEVQSAQAKLDEMQQELTKARL 785 (910)
Q Consensus 738 i~~Le~~l--e~e~~~~~ea~~r~e~l~~ql~~~k~~i~~l~~e~~~~~~ 785 (910)
.+-+|.+| -+..++++.+..|+++..+++.++...|..++.+++..|.
T Consensus 55 YKliGpvLvkqel~EAr~nV~kRlefI~~Eikr~e~~i~d~q~e~~k~R~ 104 (120)
T KOG3478|consen 55 YKLIGPVLVKQELEEARTNVGKRLEFISKEIKRLENQIRDSQEEFEKQRE 104 (120)
T ss_pred HHHhcchhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466666 5666788899999999999999999999999999997774
No 213
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=87.81 E-value=1.2e+02 Score=41.00 Aligned_cols=11 Identities=27% Similarity=0.063 Sum_probs=6.4
Q ss_pred CcccChHHHHH
Q 002544 156 ATVLTGPVLIG 166 (910)
Q Consensus 156 G~~ltg~~l~~ 166 (910)
|.|+|=..|..
T Consensus 140 ~~plt~~~l~~ 150 (1353)
T TIGR02680 140 GIPLTRDRLKE 150 (1353)
T ss_pred CccCCHHHHHH
Confidence 56666555554
No 214
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=87.78 E-value=1e+02 Score=40.35 Aligned_cols=12 Identities=8% Similarity=0.036 Sum_probs=8.1
Q ss_pred ccCCCcchHHHH
Q 002544 292 CHSSDASIDNVV 303 (910)
Q Consensus 292 ~~~~~~~~~~~~ 303 (910)
...|-|.|..|+
T Consensus 151 v~l~QG~f~~fl 162 (1047)
T PRK10246 151 MLLSQGQFAAFL 162 (1047)
T ss_pred eeeccccHHHHH
Confidence 456677777776
No 215
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=87.75 E-value=64 Score=37.92 Aligned_cols=60 Identities=12% Similarity=0.171 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 552 EQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDK 611 (910)
Q Consensus 552 e~ei~~l~~~lee~~~ki~~le~e~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~e~ 611 (910)
..+|.+|...+..+.++...+..+-..|...+...+...+....++......+..|+.++
T Consensus 419 ~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL 478 (518)
T PF10212_consen 419 MSRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDEL 478 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444433333333333333333333333
No 216
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=87.70 E-value=5.6 Score=40.75 Aligned_cols=33 Identities=24% Similarity=0.316 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 002544 667 AMERMAVIERVQRQIESLERQKTDLTNEVNRIR 699 (910)
Q Consensus 667 ~~e~~~~ie~~~~~ie~Le~e~~~Le~Ele~~~ 699 (910)
+.+++..++..+..+.+++.++.+|+..+..+.
T Consensus 158 leele~e~ee~~erlk~le~E~s~LeE~~~~l~ 190 (290)
T COG4026 158 LEELEAEYEEVQERLKRLEVENSRLEEMLKKLP 190 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Confidence 333444445555555555555555555444433
No 217
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=87.70 E-value=77 Score=38.80 Aligned_cols=15 Identities=27% Similarity=0.228 Sum_probs=10.1
Q ss_pred hCCCCceeeccCCCC
Q 002544 100 LFPDRECFTLVRPLS 114 (910)
Q Consensus 100 ~F~~~~cf~l~~P~~ 114 (910)
-+|..-||+...|+.
T Consensus 136 gip~vp~ht~s~s~s 150 (861)
T PF15254_consen 136 GIPAVPCHTTSGSGS 150 (861)
T ss_pred CCCCCCcccCCCccc
Confidence 366777877776654
No 218
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=87.66 E-value=30 Score=34.00 Aligned_cols=81 Identities=20% Similarity=0.332 Sum_probs=40.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 354 SSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNE 433 (910)
Q Consensus 354 ~~L~~e~~~le~e~e~l~k~lee~e~~~~e~~k~le~~i~el~~~lee~~~~~~~l~~~~~~Le~e~~~L~~qle~~k~e 433 (910)
+.+...+..+..+++.+.... .+++..+..+..++.........+......+.........++..++..
T Consensus 55 e~l~~~~~~l~~d~~~l~~~~-----------~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~ 123 (151)
T PF11559_consen 55 EDLSDKLRRLRSDIERLQNDV-----------ERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQ 123 (151)
T ss_pred HHHHHHHHHHHhHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444442 233344444444444444455555555555555555555555655555
Q ss_pred HHHHHHHHHHHH
Q 002544 434 ISDWKRKYDQVL 445 (910)
Q Consensus 434 ~~~~kkk~Ee~~ 445 (910)
+...+.+|...+
T Consensus 124 ~~~~~tq~~~e~ 135 (151)
T PF11559_consen 124 LQQRKTQYEHEL 135 (151)
T ss_pred HHHHHHHHHHHH
Confidence 666555555433
No 219
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=87.23 E-value=57 Score=36.81 Aligned_cols=14 Identities=21% Similarity=0.586 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHH
Q 002544 364 EDNMKLLKKQLEDS 377 (910)
Q Consensus 364 e~e~e~l~k~lee~ 377 (910)
...++.++..+...
T Consensus 14 ~~~V~~m~~~L~~~ 27 (344)
T PF12777_consen 14 EEQVEEMQEELEEK 27 (344)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444443333
No 220
>PRK10869 recombination and repair protein; Provisional
Probab=87.11 E-value=78 Score=38.24 Aligned_cols=42 Identities=14% Similarity=0.084 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 545 ATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKEL 586 (910)
Q Consensus 545 ~~kl~~~e~ei~~l~~~lee~~~ki~~le~e~~~L~~el~dL 586 (910)
..++...=.+...+...++++........+.+..|+-+++++
T Consensus 156 ~~~~~~~y~~~~~~~~~l~~l~~~~~~~~~~~d~l~fql~Ei 197 (553)
T PRK10869 156 LQEMRAAYQLWHQSCRDLAQHQQQSQERAARKQLLQYQLKEL 197 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 333333333344444444444444444444444444444333
No 221
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=87.11 E-value=38 Score=34.66 Aligned_cols=41 Identities=17% Similarity=0.336 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 002544 661 SEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRES 701 (910)
Q Consensus 661 ~e~~r~~~e~~~~ie~~~~~ie~Le~e~~~Le~Ele~~~~~ 701 (910)
...+..+.+...-++..+++++.|.+.+.....+++..+..
T Consensus 133 ~~AQ~el~eK~qLLeaAk~Rve~L~~QL~~Ar~D~~~tk~a 173 (188)
T PF05335_consen 133 EGAQQELAEKTQLLEAAKRRVEELQRQLQAARADYEKTKKA 173 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555556666666666666666666666666544
No 222
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=87.00 E-value=34 Score=36.28 Aligned_cols=57 Identities=16% Similarity=0.318 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 554 CLTTLRLELKAAESKMRSYEVEIS------SQKLETKELSEKLEAVNAKAQSFEREARIMEQD 610 (910)
Q Consensus 554 ei~~l~~~lee~~~ki~~le~e~~------~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~e 610 (910)
.|.+|..+++..+..++++....+ .-+..+..+...++.-+--+..|+.-++.|++.
T Consensus 130 ~Id~L~~QiE~~E~E~E~L~~~~kKkk~~~~~~~r~~~l~~~ierhk~Hi~kLE~lLR~L~N~ 192 (233)
T PF04065_consen 130 SIDELNRQIEQLEAEIESLSSQKKKKKKDSTKQERIEELESRIERHKFHIEKLELLLRLLDND 192 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 344555555555555554443221 345556666666666666666666666666554
No 223
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=86.87 E-value=91 Score=38.75 Aligned_cols=62 Identities=21% Similarity=0.242 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 574 VEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQ--DKVYLEQKYKSEFERFEEVQERCKVA 635 (910)
Q Consensus 574 ~e~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~--e~~el~~~l~e~~~~~eE~e~~l~~~ 635 (910)
.+...++..++.+..+..+....+..+..++..++. ....++....++..++.+.-..|..+
T Consensus 774 ~E~~~lEe~~d~~~ee~~el~a~v~~~~~qi~~lE~g~~~a~lr~~~~slk~~l~e~ar~Wasl 837 (984)
T COG4717 774 EELALLEEAIDALDEEVEELHAQVAALSRQIAQLEGGGTVAELRQRRESLKEDLEEKARKWASL 837 (984)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444432 33444444444444444444444333
No 224
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=86.81 E-value=41 Score=34.71 Aligned_cols=109 Identities=17% Similarity=0.235 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 386 KRYDDAINDKKKLADDYTSRINNLQG--ENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLK 463 (910)
Q Consensus 386 k~le~~i~el~~~lee~~~~~~~l~~--~~~~Le~e~~~L~~qle~~k~e~~~~kkk~Ee~~~e~~~~k~kl~~eleel~ 463 (910)
+++..-+..++..+....+.+|++.. .+..|...+..+...+..++..+.+.+..|..++.. +...++++.+|=
T Consensus 5 ~~~~~~~d~lq~~i~~as~~lNd~TGYs~Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~~ai~~----Rs~sQrEvn~LL 80 (207)
T PF05546_consen 5 KKLSFYMDSLQETIFTASQALNDVTGYSEIEKLKKSIEELEDELEAARQEVREAKAAYDDAIQQ----RSSSQREVNELL 80 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 34445555555566666666666653 455666777778888888899999999999988876 667788888887
Q ss_pred hhhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 464 SRST----AAEARLAAAREQALSAQEEVEEWKRKYGVAV 498 (910)
Q Consensus 464 ~~~e----e~e~~~~~le~~~~~~q~Elee~~~k~e~~~ 498 (910)
.+.. .--+++..|-+.=+.......+.+.+|..+.
T Consensus 81 qRK~sWs~~DleRFT~Lyr~dH~~e~~e~~ak~~l~~aE 119 (207)
T PF05546_consen 81 QRKHSWSPADLERFTELYRNDHENEQAEEEAKEALEEAE 119 (207)
T ss_pred hcccCCChHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 7743 3334577777766666666666666665543
No 225
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=86.39 E-value=49 Score=35.21 Aligned_cols=41 Identities=20% Similarity=0.257 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 562 LKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFER 602 (910)
Q Consensus 562 lee~~~ki~~le~e~~~L~~el~dL~~~le~~~~~~~~lEk 602 (910)
|..+..+....+.++...+.+-......+..+...+..|++
T Consensus 123 Ln~A~~kVneAE~ek~~ae~eH~~~~~~~~~ae~~v~~Lek 163 (239)
T PF05276_consen 123 LNHATQKVNEAEQEKTRAEREHQRRARIYNEAEQRVQQLEK 163 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333333
No 226
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=85.81 E-value=40 Score=33.57 Aligned_cols=9 Identities=22% Similarity=0.626 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 002544 737 TVKKLEDLL 745 (910)
Q Consensus 737 ~i~~Le~~l 745 (910)
.+..|...+
T Consensus 113 rl~~l~~ti 121 (159)
T PF05384_consen 113 RLRNLEETI 121 (159)
T ss_pred HHHHHHHHH
Confidence 333333333
No 227
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=85.75 E-value=80 Score=37.01 Aligned_cols=33 Identities=9% Similarity=0.077 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 581 LETKELSEKLEAVNAKAQSFEREARIMEQDKVY 613 (910)
Q Consensus 581 ~el~dL~~~le~~~~~~~~lEk~~~~Le~e~~e 613 (910)
.+...+..+.......+..|++-++.....++.
T Consensus 258 ~E~~~l~eq~~~ld~AV~~Ltk~v~~~q~sL~k 290 (531)
T PF15450_consen 258 SEESKLLEQCRKLDEAVAQLTKFVQQNQKSLNK 290 (531)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444455555555555555544444433
No 228
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=85.72 E-value=64 Score=35.89 Aligned_cols=20 Identities=15% Similarity=0.097 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 002544 561 ELKAAESKMRSYEVEISSQK 580 (910)
Q Consensus 561 ~lee~~~ki~~le~e~~~L~ 580 (910)
-+..+..+...+..+...|+
T Consensus 173 ~~~~l~~~~~~L~~e~~~L~ 192 (312)
T smart00787 173 IKPKLRDRKDALEEELRQLK 192 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 229
>PRK10869 recombination and repair protein; Provisional
Probab=85.71 E-value=92 Score=37.67 Aligned_cols=15 Identities=7% Similarity=0.129 Sum_probs=6.2
Q ss_pred HHHHHHHhhhHHHHH
Q 002544 457 SEIEVLKSRSTAAEA 471 (910)
Q Consensus 457 ~eleel~~~~ee~e~ 471 (910)
.+++-++-++++.+.
T Consensus 185 ~~~d~l~fql~Ei~~ 199 (553)
T PRK10869 185 ARKQLLQYQLKELNE 199 (553)
T ss_pred HHHHHHHHHHHHHHh
Confidence 334444444444433
No 230
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=85.55 E-value=56 Score=35.09 Aligned_cols=17 Identities=24% Similarity=0.646 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 002544 426 TVDSLKNEISDWKRKYD 442 (910)
Q Consensus 426 qle~~k~e~~~~kkk~E 442 (910)
+++.++.++..|..+.+
T Consensus 64 ~l~~ak~eLqe~eek~e 80 (258)
T PF15397_consen 64 QLQQAKAELQEWEEKEE 80 (258)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45555566666665544
No 231
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.42 E-value=16 Score=30.53 Aligned_cols=35 Identities=11% Similarity=0.332 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 592 AVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFE 626 (910)
Q Consensus 592 ~~~~~~~~lEk~~~~Le~e~~el~~~l~e~~~~~e 626 (910)
++......|+++...+..+...|++++..+-.+++
T Consensus 43 ~~q~~reaL~~eneqlk~e~~~WQerlrsLLGkme 77 (79)
T COG3074 43 NAQHQREALERENEQLKEEQNGWQERLRALLGKME 77 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 33444455566666666666666666555555544
No 232
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=85.11 E-value=86 Score=36.86 Aligned_cols=19 Identities=11% Similarity=0.172 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 002544 663 FENLAMERMAVIERVQRQI 681 (910)
Q Consensus 663 ~~r~~~e~~~~ie~~~~~i 681 (910)
.+..+....+.+..++..+
T Consensus 296 ~~~~l~~~~~~l~~a~~~l 314 (457)
T TIGR01000 296 LNQKLLELESKIKSLKEDS 314 (457)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333444444454444433
No 233
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=84.69 E-value=59 Score=34.62 Aligned_cols=16 Identities=25% Similarity=0.428 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 002544 623 ERFEEVQERCKVAEKE 638 (910)
Q Consensus 623 ~~~eE~e~~l~~~e~e 638 (910)
.++.+++.+...++.+
T Consensus 128 ~kVneAE~ek~~ae~e 143 (239)
T PF05276_consen 128 QKVNEAEQEKTRAERE 143 (239)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444433333333
No 234
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=84.60 E-value=50 Score=34.98 Aligned_cols=39 Identities=21% Similarity=0.287 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 572 YEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQD 610 (910)
Q Consensus 572 le~e~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~e 610 (910)
+.+++..|..+-....+.+..+...+..++.-++..+.+
T Consensus 37 ~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~e 75 (230)
T PF10146_consen 37 YRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESE 75 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333333
No 235
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=84.60 E-value=66 Score=36.85 Aligned_cols=15 Identities=7% Similarity=0.377 Sum_probs=6.8
Q ss_pred HHHHHhcCCCCCCcc
Q 002544 170 SYLDAINNGAVPTIS 184 (910)
Q Consensus 170 ~yv~ain~g~vP~i~ 184 (910)
.|-..+|+..+-.++
T Consensus 130 ~Fy~efNGk~Fn~le 144 (493)
T KOG0804|consen 130 TFYEEFNGKQFNSLE 144 (493)
T ss_pred HHHHHcCCCcCCCCC
Confidence 344445554444443
No 236
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=84.47 E-value=22 Score=30.44 Aligned_cols=61 Identities=18% Similarity=0.345 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 386 KRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLT 446 (910)
Q Consensus 386 k~le~~i~el~~~lee~~~~~~~l~~~~~~Le~e~~~L~~qle~~k~e~~~~kkk~Ee~~~ 446 (910)
..++..|..+-..+.-++..+..|..+...+..+...|..+...++.+-..|..++...+.
T Consensus 7 ~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~ 67 (72)
T PF06005_consen 7 EQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLG 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555666666666666666666677777777777777777777777654443
No 237
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=84.30 E-value=1.2e+02 Score=37.90 Aligned_cols=152 Identities=16% Similarity=0.140 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH------HHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 002544 350 GSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLK---RYDDAIN------DKK-KLADDYTSRINNLQGENISLREK 419 (910)
Q Consensus 350 eke~~~L~~e~~~le~e~e~l~k~lee~e~~~~e~~k---~le~~i~------el~-~~lee~~~~~~~l~~~~~~Le~e 419 (910)
.+.+..|......+++++..+...++..++.+..+.- -+..++. ++. ...+-..++...--+++..|+.+
T Consensus 119 ~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~keleir~~E~~~~~~~ae~a~kqhle~vkkiakLEaE 198 (769)
T PF05911_consen 119 EKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKELEIRNEEREYSRRAAEAASKQHLESVKKIAKLEAE 198 (769)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555666666666666555333111 1111110 111 23334455555556677788888
Q ss_pred HHHHHHHHH----------HHHHHHHHHHHHHHHHH------H-H-----HHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 002544 420 SSSLSKTVD----------SLKNEISDWKRKYDQVL------T-K-----QKAMEDQVCSEIEVLKSRSTAAEARLAAAR 477 (910)
Q Consensus 420 ~~~L~~qle----------~~k~e~~~~kkk~Ee~~------~-e-----~~~~k~kl~~eleel~~~~ee~e~~~~~le 477 (910)
|..|+..+- ..+.+++.+-+.+-+.- . . .-.-......+.+-|-.++-..++....|.
T Consensus 199 C~rLr~l~rk~lpgpaa~a~mk~ev~~~~~~~~~~r~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~eeEnk~Lk 278 (769)
T PF05911_consen 199 CQRLRALVRKKLPGPAALAQMKNEVESLGRDSGENRRRRSPSRPSSPHDFSPQNPQKRSKESEFLTERLQAMEEENKMLK 278 (769)
T ss_pred HHHHHHHHhccCCChHHHHHhHHHHHHhccccccccCCCCCCcccccccccccccccchhhhHHHHHHHHHHHHHHHHHH
Confidence 888865544 44556665533221100 0 0 000012234556677777888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 478 EQALSAQEEVEEWKRKYGVAVREA 501 (910)
Q Consensus 478 ~~~~~~q~Elee~~~k~e~~~~~~ 501 (910)
+.+.+-.+|+.-.|..|..++.+.
T Consensus 279 e~l~~k~~ELq~sr~~~a~ta~kL 302 (769)
T PF05911_consen 279 EALAKKNSELQFSRNMYAKTASKL 302 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888876544
No 238
>PF12949 HeH: HeH/LEM domain; PDB: 2OUT_A.
Probab=84.11 E-value=0.68 Score=33.54 Aligned_cols=33 Identities=33% Similarity=0.513 Sum_probs=20.8
Q ss_pred hHhhHHHHHHHHHhcCchhhhhhccCCChHHHHHHHH
Q 002544 867 TKFTVQKLKQELTKHNFGAELLQLRNPNKKEILALYE 903 (910)
Q Consensus 867 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 903 (910)
.++||..||..|++||..- =.+.+|-|+++|++
T Consensus 2 ~sltV~~Lk~iL~~~~I~~----ps~AkKaeLv~L~~ 34 (35)
T PF12949_consen 2 KSLTVAQLKRILDEHGIEF----PSNAKKAELVALFN 34 (35)
T ss_dssp TT--SHHHHHHHHHHT-------SSS--SHHHHHH--
T ss_pred CcCcHHHHHHHHHHcCCCC----CCCCCHHHHHHHHc
Confidence 4689999999999999642 13788999999976
No 239
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.64 E-value=89 Score=35.83 Aligned_cols=52 Identities=12% Similarity=0.137 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 576 ISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEE 627 (910)
Q Consensus 576 ~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~e~~el~~~l~e~~~~~eE 627 (910)
+..+...|.++...+......+..+-..-+.|..+++.+.++++.-..-.++
T Consensus 384 rk~ytqrikEi~gniRKq~~DI~Kil~etreLqkq~ns~se~L~Rsfavtde 435 (521)
T KOG1937|consen 384 RKVYTQRIKEIDGNIRKQEQDIVKILEETRELQKQENSESEALNRSFAVTDE 435 (521)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 4556666666666666666667777777777777777776665555444443
No 240
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=83.62 E-value=68 Score=34.44 Aligned_cols=17 Identities=29% Similarity=0.216 Sum_probs=9.2
Q ss_pred ccCCCCCCcccccCCCc
Q 002544 840 YTQPEDGGSVFRGDDDN 856 (910)
Q Consensus 840 ~~~~~~~~~~~~~~~~~ 856 (910)
+-++.||.....++...
T Consensus 195 ~~~t~Dg~~~g~~~~~~ 211 (251)
T PF11932_consen 195 YYQTLDGSQAGVWDPAT 211 (251)
T ss_pred eeECCCccceeeecCCC
Confidence 44566676665544433
No 241
>PF15294 Leu_zip: Leucine zipper
Probab=83.14 E-value=74 Score=34.53 Aligned_cols=45 Identities=20% Similarity=0.219 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 448 QKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKR 492 (910)
Q Consensus 448 ~~~~k~kl~~eleel~~~~ee~e~~~~~le~~~~~~q~Elee~~~ 492 (910)
+.....+|+.+++.|+.++-..+..+...-+.+..++.++.+++.
T Consensus 130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~ 174 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQD 174 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556688899999999999999999999998889999999987775
No 242
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=82.61 E-value=19 Score=30.52 Aligned_cols=58 Identities=17% Similarity=0.215 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 554 CLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDK 611 (910)
Q Consensus 554 ei~~l~~~lee~~~ki~~le~e~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~e~ 611 (910)
.+..|+..+..+..++...+..++.|..+-.....++..+-..+..|..++..+..++
T Consensus 6 ~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el 63 (69)
T PF14197_consen 6 EIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKEL 63 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444444444444444444444443
No 243
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=82.54 E-value=61 Score=33.09 Aligned_cols=50 Identities=12% Similarity=0.201 Sum_probs=28.9
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 457 SEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALE 506 (910)
Q Consensus 457 ~eleel~~~~ee~e~~~~~le~~~~~~q~Elee~~~k~e~~~~~~k~~le 506 (910)
.+-.....-+.....++..|.++...+...+.+++..-+......++++.
T Consensus 127 ~ee~~~~~y~~~eh~rll~LWr~v~~lRr~f~elr~~TerdL~~~r~e~~ 176 (182)
T PF15035_consen 127 EEEENFNQYLSSEHSRLLSLWREVVALRRQFAELRTATERDLSDMRAEFA 176 (182)
T ss_pred HHHHHHHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 33344444455555567777777777777777666555554444444433
No 244
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=82.43 E-value=64 Score=33.30 Aligned_cols=16 Identities=38% Similarity=0.522 Sum_probs=6.3
Q ss_pred HHHHHhHHHHHHHHHH
Q 002544 684 LERQKTDLTNEVNRIR 699 (910)
Q Consensus 684 Le~e~~~Le~Ele~~~ 699 (910)
+.++..+|..+|...+
T Consensus 136 l~~e~erL~aeL~~er 151 (202)
T PF06818_consen 136 LRREVERLRAELQRER 151 (202)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333334444444333
No 245
>PLN02939 transferase, transferring glycosyl groups
Probab=82.06 E-value=1.6e+02 Score=37.69 Aligned_cols=19 Identities=26% Similarity=0.184 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 002544 539 EEMKEKATKIEHAEQCLTT 557 (910)
Q Consensus 539 ~ei~~~~~kl~~~e~ei~~ 557 (910)
.+-+.++.++..++-++.+
T Consensus 163 ~~~~~~~~~~~~~~~~~~~ 181 (977)
T PLN02939 163 TEKEALQGKINILEMRLSE 181 (977)
T ss_pred HHHHHHHhhHHHHHHHhhh
Confidence 3444555555555544444
No 246
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=82.06 E-value=61 Score=34.81 Aligned_cols=32 Identities=16% Similarity=0.230 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 583 TKELSEKLEAVNAKAQSFEREARIMEQDKVYL 614 (910)
Q Consensus 583 l~dL~~~le~~~~~~~~lEk~~~~Le~e~~el 614 (910)
|..|..++.+....++.-+.++..|..++..+
T Consensus 70 iRHLkakLkes~~~l~dRetEI~eLksQL~RM 101 (305)
T PF15290_consen 70 IRHLKAKLKESENRLHDRETEIDELKSQLARM 101 (305)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444443
No 247
>PRK11281 hypothetical protein; Provisional
Probab=81.38 E-value=1.9e+02 Score=37.99 Aligned_cols=13 Identities=8% Similarity=0.148 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHH
Q 002544 534 LAEKEEEMKEKAT 546 (910)
Q Consensus 534 ~~ele~ei~~~~~ 546 (910)
+..++.+++.++.
T Consensus 236 ~~~~~~~~~~lq~ 248 (1113)
T PRK11281 236 IQRLEHQLQLLQE 248 (1113)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 248
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=81.08 E-value=2.7 Score=30.47 Aligned_cols=34 Identities=26% Similarity=0.448 Sum_probs=27.2
Q ss_pred hhHhhHHHHHHHHHhcCchhhhhhccCCChHHHHHHHHHh
Q 002544 866 YTKFTVQKLKQELTKHNFGAELLQLRNPNKKEILALYEKC 905 (910)
Q Consensus 866 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 905 (910)
|.+|||..||++|.++|.- .+-+|.++++-...|
T Consensus 1 l~~l~v~eLk~~l~~~gL~------~~G~K~~Li~Rl~~~ 34 (35)
T PF02037_consen 1 LSKLTVAELKEELKERGLS------TSGKKAELIERLKEH 34 (35)
T ss_dssp TTTSHHHHHHHHHHHTTS-------STSSHHHHHHHHHHH
T ss_pred CCcCcHHHHHHHHHHCCCC------CCCCHHHHHHHHHHh
Confidence 6789999999999999853 267788888876654
No 249
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=81.04 E-value=37 Score=37.44 Aligned_cols=53 Identities=17% Similarity=0.168 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 580 KLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERC 632 (910)
Q Consensus 580 ~~el~dL~~~le~~~~~~~~lEk~~~~Le~e~~el~~~l~e~~~~~eE~e~~l 632 (910)
...+.+++..+..+--.-..|..+...+..++.-|+..+++.+..+.++..++
T Consensus 83 k~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~ 135 (302)
T PF09738_consen 83 KDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREY 135 (302)
T ss_pred HHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444433334444444444444444444333333333333333
No 250
>COG5283 Phage-related tail protein [Function unknown]
Probab=80.48 E-value=1.9e+02 Score=37.48 Aligned_cols=14 Identities=43% Similarity=0.567 Sum_probs=9.5
Q ss_pred hccccccccccccc
Q 002544 798 SHGKRARADDYEAG 811 (910)
Q Consensus 798 ~~~~~~~~~~~~~~ 811 (910)
.+|||+.+++...|
T Consensus 227 qlsk~~e~~~~~aG 240 (1213)
T COG5283 227 QLGKRLETDKAGAG 240 (1213)
T ss_pred hhccccccchhhhh
Confidence 37889877775443
No 251
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=80.46 E-value=1.1e+02 Score=34.81 Aligned_cols=75 Identities=13% Similarity=0.012 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 543 EKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQK 617 (910)
Q Consensus 543 ~~~~kl~~~e~ei~~l~~~lee~~~ki~~le~e~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~e~~el~~~ 617 (910)
..+.++..++.+...+...+-.+...++.+..........|+.+..++.........+-..++.+++++...++.
T Consensus 301 nlqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~~eq~l~~rm~d~Lrrfq~ekeatqEL 375 (502)
T KOG0982|consen 301 NLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLICEQKLRVRMNDILRRFQEEKEATQEL 375 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 334444455555556666666666666666677777777777777776666666666666666666666666665
No 252
>PRK10884 SH3 domain-containing protein; Provisional
Probab=80.20 E-value=30 Score=36.06 Aligned_cols=19 Identities=21% Similarity=0.447 Sum_probs=8.0
Q ss_pred HHHhHHHHHHHHHHHHHHH
Q 002544 359 KYRSIEDNMKLLKKQLEDS 377 (910)
Q Consensus 359 e~~~le~e~e~l~k~lee~ 377 (910)
.+..++.++..++..+.+.
T Consensus 94 rlp~le~el~~l~~~l~~~ 112 (206)
T PRK10884 94 RVPDLENQVKTLTDKLNNI 112 (206)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444443
No 253
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=79.97 E-value=34 Score=29.43 Aligned_cols=33 Identities=15% Similarity=0.186 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 562 LKAAESKMRSYEVEISSQKLETKELSEKLEAVN 594 (910)
Q Consensus 562 lee~~~ki~~le~e~~~L~~el~dL~~~le~~~ 594 (910)
.+.+..+--.+...++.|+..+.++...+....
T Consensus 21 GekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~ 53 (74)
T PF12329_consen 21 GEKLSKKELKLNNTIKKLRAKIKELEKQIKELK 53 (74)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333334444444443333333333
No 254
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=79.76 E-value=72 Score=32.21 Aligned_cols=29 Identities=14% Similarity=0.275 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 589 KLEAVNAKAQSFEREARIMEQDKVYLEQK 617 (910)
Q Consensus 589 ~le~~~~~~~~lEk~~~~Le~e~~el~~~ 617 (910)
+++.+.-....+..++..=..++..++..
T Consensus 43 DFeqLkien~~l~~kIeERn~eL~~Lk~~ 71 (177)
T PF13870_consen 43 DFEQLKIENQQLNEKIEERNKELLKLKKK 71 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444445544444444444443
No 255
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=79.56 E-value=1.3e+02 Score=35.08 Aligned_cols=99 Identities=15% Similarity=0.168 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 529 EFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIME 608 (910)
Q Consensus 529 E~~~~~~ele~ei~~~~~kl~~~e~ei~~l~~~lee~~~ki~~le~e~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le 608 (910)
.+.+.++....++...+..+.....++..+.+++..+.+.|..+.++++.+..+.+++..-+......-..++-+.+.++
T Consensus 202 ~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~Ele 281 (596)
T KOG4360|consen 202 DCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELE 281 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 33344444444444444444444444555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 002544 609 QDKVYLEQKYKSEFERFEE 627 (910)
Q Consensus 609 ~e~~el~~~l~e~~~~~eE 627 (910)
....++...+++.+..+..
T Consensus 282 DkyAE~m~~~~EaeeELk~ 300 (596)
T KOG4360|consen 282 DKYAECMQMLHEAEEELKC 300 (596)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 5555555555554444443
No 256
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=79.47 E-value=36 Score=28.49 Aligned_cols=56 Identities=20% Similarity=0.315 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 562 LKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQK 617 (910)
Q Consensus 562 lee~~~ki~~le~e~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~e~~el~~~ 617 (910)
++.++.++...-.++.-|+.++++|...-..+...+.++......|+.+-..++..
T Consensus 6 ~ekLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e 61 (79)
T COG3074 6 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEE 61 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666777777777777766666666666666666666666555543
No 257
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=79.13 E-value=91 Score=33.00 Aligned_cols=88 Identities=14% Similarity=0.148 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH-HHHHHHHHHHHHHH
Q 002544 381 KSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEI----SDWKRKY-DQVLTKQKAMEDQV 455 (910)
Q Consensus 381 ~~e~~k~le~~i~el~~~lee~~~~~~~l~~~~~~Le~e~~~L~~qle~~k~e~----~~~kkk~-Ee~~~e~~~~k~kl 455 (910)
+++++..+...-..++.+..+..|.-+.+-.++..-+.+..++..++..++++. ...++-+ +.+++. .-.+|
T Consensus 106 l~d~i~nLk~se~~lkqQ~~~a~RrE~ilv~rlA~kEQEmqe~~sqi~~lK~qq~Ps~~qlR~~llDPAinl---~F~rl 182 (330)
T KOG2991|consen 106 LSDDITNLKESEEKLKQQQQEAARRENILVMRLATKEQEMQECTSQIQYLKQQQQPSVAQLRSTLLDPAINL---FFLRL 182 (330)
T ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHhhChHHHH---HHHHH
Confidence 344555555555556666667777777777777777777777777777666542 2333332 333332 23344
Q ss_pred HHHHHHHHhhhHHHHH
Q 002544 456 CSEIEVLKSRSTAAEA 471 (910)
Q Consensus 456 ~~eleel~~~~ee~e~ 471 (910)
..+++.-+..++++..
T Consensus 183 K~ele~tk~Klee~Qn 198 (330)
T KOG2991|consen 183 KGELEQTKDKLEEAQN 198 (330)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4555555555544444
No 258
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=78.92 E-value=1.2e+02 Score=34.10 Aligned_cols=17 Identities=18% Similarity=0.348 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 002544 483 AQEEVEEWKRKYGVAVR 499 (910)
Q Consensus 483 ~q~Elee~~~k~e~~~~ 499 (910)
+|..++++.+.|..+..
T Consensus 350 HQkkiEdLQRqHqRELe 366 (593)
T KOG4807|consen 350 HQKKIEDLQRQHQRELE 366 (593)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45556666666665543
No 259
>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proteins in this group have been named FCH domain Only (FCHO) proteins. Vertebrates have two members, FCHO1 and FCHO2. These proteins contain an F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=78.77 E-value=1e+02 Score=33.28 Aligned_cols=48 Identities=10% Similarity=0.202 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 002544 424 SKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEA 471 (910)
Q Consensus 424 ~~qle~~k~e~~~~kkk~Ee~~~e~~~~k~kl~~eleel~~~~ee~e~ 471 (910)
.++++++...+......|...+..++..+.....++...=..+.+.+.
T Consensus 149 ~k~~eK~~~K~~ka~~~Y~~~v~~~~~~~~~~~~~m~~~~~~~Q~lEe 196 (261)
T cd07648 149 PKEIEKAEAKLKKAQDEYKALVEKYNNIRADFETKMTDSCKRFQEIEE 196 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666666666666666665555555555555554
No 260
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=78.63 E-value=28 Score=29.93 Aligned_cols=19 Identities=32% Similarity=0.386 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 002544 533 TLAEKEEEMKEKATKIEHA 551 (910)
Q Consensus 533 ~~~ele~ei~~~~~kl~~~ 551 (910)
.+.+.++.|..+..+-+.+
T Consensus 6 ~l~EKDe~Ia~L~eEGekL 24 (74)
T PF12329_consen 6 KLAEKDEQIAQLMEEGEKL 24 (74)
T ss_pred HHHhHHHHHHHHHHHHHHH
Confidence 3444455555555444433
No 261
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=78.49 E-value=1.1e+02 Score=34.69 Aligned_cols=55 Identities=24% Similarity=0.319 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 557 TLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDK 611 (910)
Q Consensus 557 ~l~~~lee~~~ki~~le~e~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~e~ 611 (910)
.+..+.+.+..++...+.++..|+.+..++.++.-........+.+....+++..
T Consensus 38 ~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~~~a~~~~~t~~~~~~en~~ 92 (459)
T KOG0288|consen 38 ILRAESRAIKAKLQEKELELNRLQEENTQLNEERVREEATEKTLTVDVLIAENLR 92 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444445555555555555555555555444444444444444444433
No 262
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=77.28 E-value=1e+02 Score=32.57 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=9.1
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHH
Q 002544 458 EIEVLKSRSTAAEARLAAAREQA 480 (910)
Q Consensus 458 eleel~~~~ee~e~~~~~le~~~ 480 (910)
.++.|+..+..++.++..+...+
T Consensus 114 ~~~~l~~~~~~Le~Ki~e~~~~~ 136 (225)
T COG1842 114 QVEKLKKQLAALEQKIAELRAKK 136 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444443333
No 263
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=77.09 E-value=1.4e+02 Score=33.92 Aligned_cols=30 Identities=13% Similarity=0.076 Sum_probs=16.6
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 357 MLKYRSIEDNMKLLKKQLEDSERYKSEYLK 386 (910)
Q Consensus 357 ~~e~~~le~e~e~l~k~lee~e~~~~e~~k 386 (910)
...+.-++.++..+++.+..++..+.++..
T Consensus 169 ~~a~~fl~~ql~~~~~~l~~ae~~l~~fr~ 198 (362)
T TIGR01010 169 KDTIAFAENEVKEAEQRLNATKAELLKYQI 198 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556666666666666665444443
No 264
>PF13166 AAA_13: AAA domain
Probab=76.83 E-value=2e+02 Score=35.78 Aligned_cols=8 Identities=13% Similarity=0.318 Sum_probs=4.0
Q ss_pred cCCCCCCc
Q 002544 176 NNGAVPTI 183 (910)
Q Consensus 176 n~g~vP~i 183 (910)
+.|.+|.+
T Consensus 77 ~~~~~~~i 84 (712)
T PF13166_consen 77 EENEIKGI 84 (712)
T ss_pred CcCCcccc
Confidence 44555554
No 265
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.43 E-value=1.7e+02 Score=34.56 Aligned_cols=75 Identities=16% Similarity=0.100 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 537 KEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDK 611 (910)
Q Consensus 537 le~ei~~~~~kl~~~e~ei~~l~~~lee~~~ki~~le~e~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~e~ 611 (910)
...+..+++.++..++..+.+....+..+.+...+|-...-.+..++.++..-++..+..+..++..++......
T Consensus 336 ~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEqkkEec~kme~qLkkAh~~~ 410 (654)
T KOG4809|consen 336 FRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQKKEECSKMEAQLKKAHNIE 410 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333444444444444444445555555555555555555555666666666666666666666665555544443
No 266
>PF14992 TMCO5: TMCO5 family
Probab=76.00 E-value=95 Score=33.71 Aligned_cols=29 Identities=21% Similarity=0.161 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 581 LETKELSEKLEAVNAKAQSFEREARIMEQ 609 (910)
Q Consensus 581 ~el~dL~~~le~~~~~~~~lEk~~~~Le~ 609 (910)
..+......+......+...++++..++.
T Consensus 109 ~~lq~sk~~lqql~~~~~~qE~ei~kve~ 137 (280)
T PF14992_consen 109 QSLQFSKNKLQQLLESCASQEKEIAKVED 137 (280)
T ss_pred cccHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444444433
No 267
>PRK10698 phage shock protein PspA; Provisional
Probab=75.93 E-value=1.1e+02 Score=32.26 Aligned_cols=45 Identities=22% Similarity=0.272 Sum_probs=31.2
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 455 VCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVR 499 (910)
Q Consensus 455 l~~eleel~~~~ee~e~~~~~le~~~~~~q~Elee~~~k~e~~~~ 499 (910)
+...+.+++..+-..-+....+++++..++..+.+|..+-..++.
T Consensus 36 m~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~ 80 (222)
T PRK10698 36 MEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELALR 80 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555556666667777888888888888888877666654
No 268
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=75.91 E-value=69 Score=30.19 Aligned_cols=79 Identities=19% Similarity=0.397 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH---HH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 349 IGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSE---YL--------KRYDDAINDKKKLADDYTSRINNLQGENISLR 417 (910)
Q Consensus 349 ~eke~~~L~~e~~~le~e~e~l~k~lee~e~~~~e---~~--------k~le~~i~el~~~lee~~~~~~~l~~~~~~Le 417 (910)
...+++.+..+...++.++..+.+.+++++..-.+ |. .+.+..+.++..+.+.+..++..++++-..++
T Consensus 18 Lq~ql~~~~~qk~~le~qL~E~~~al~Ele~l~eD~~vYk~VG~llvk~~k~~~~~eL~er~E~Le~ri~tLekQe~~l~ 97 (119)
T COG1382 18 LQQQLQKVILQKQQLEAQLKEIEKALEELEKLDEDAPVYKKVGNLLVKVSKEEAVDELEERKETLELRIKTLEKQEEKLQ 97 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666677777777777778887777664222 11 14455555555555555555555555544444
Q ss_pred HHHHHHHHHH
Q 002544 418 EKSSSLSKTV 427 (910)
Q Consensus 418 ~e~~~L~~ql 427 (910)
.+.+.|...+
T Consensus 98 e~l~eLq~~i 107 (119)
T COG1382 98 ERLEELQSEI 107 (119)
T ss_pred HHHHHHHHHH
Confidence 4444444333
No 269
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=75.85 E-value=30 Score=29.84 Aligned_cols=59 Identities=17% Similarity=0.195 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 562 LKAAESKMRSYEVEISSQKLETKELSEKLEA-VNAKAQSFEREARIMEQDKVYLEQKYKS 620 (910)
Q Consensus 562 lee~~~ki~~le~e~~~L~~el~dL~~~le~-~~~~~~~lEk~~~~Le~e~~el~~~l~e 620 (910)
+.+.+..|+.+.++.-.|...|-.|...+.. .......+-+..-.|..++..++..+..
T Consensus 2 lrEqe~~i~~L~KENF~LKLrI~fLee~l~~~~~~~~~~~~keNieLKve~~~L~~el~~ 61 (75)
T PF07989_consen 2 LREQEEQIDKLKKENFNLKLRIYFLEERLQKLGPESIEELLKENIELKVEVESLKRELQE 61 (75)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777888888888888888888888884 3455556666666666666665554333
No 270
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=75.74 E-value=1.5e+02 Score=33.67 Aligned_cols=43 Identities=28% Similarity=0.390 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 576 ISSQKLETKELSEKLEAV-NAKAQSFEREARIMEQDKVYLEQKY 618 (910)
Q Consensus 576 ~~~L~~el~dL~~~le~~-~~~~~~lEk~~~~Le~e~~el~~~l 618 (910)
.+.|+.+.-+|...++.. ..-+..|=+++..|+++..-|+.++
T Consensus 181 leQLRre~V~lentlEQEqEalvN~LwKrmdkLe~ekr~Lq~Kl 224 (552)
T KOG2129|consen 181 LEQLRREAVQLENTLEQEQEALVNSLWKRMDKLEQEKRYLQKKL 224 (552)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444444332 2334566677777777777766654
No 271
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=75.63 E-value=5.5 Score=43.89 Aligned_cols=57 Identities=21% Similarity=0.230 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 557 TLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVY 613 (910)
Q Consensus 557 ~l~~~lee~~~ki~~le~e~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~e~~e 613 (910)
.+.++|..++..+..+...+..+...+.+|..++......+..+.-.+..+...+..
T Consensus 32 ~I~eRLsaLEssv~sL~~SVs~lss~iSdLss~L~~l~~sl~~~~s~L~sLsstV~~ 88 (326)
T PF04582_consen 32 PIRERLSALESSVASLSDSVSSLSSTISDLSSDLQDLASSLADMTSELNSLSSTVTS 88 (326)
T ss_dssp ---------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333333333333333333333333
No 272
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=75.22 E-value=1.2e+02 Score=32.41 Aligned_cols=13 Identities=8% Similarity=0.225 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHH
Q 002544 605 RIMEQDKVYLEQK 617 (910)
Q Consensus 605 ~~Le~e~~el~~~ 617 (910)
..++..+..+...
T Consensus 66 ~~~e~~i~~~~~~ 78 (247)
T PF06705_consen 66 SKFEEQINNMQER 78 (247)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
No 273
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=75.00 E-value=83 Score=30.40 Aligned_cols=21 Identities=14% Similarity=0.234 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 002544 597 AQSFEREARIMEQDKVYLEQK 617 (910)
Q Consensus 597 ~~~lEk~~~~Le~e~~el~~~ 617 (910)
+..+++++..+...+..+...
T Consensus 96 ~~~l~~~~~~l~~~~~~l~~~ 116 (140)
T PRK03947 96 IEILDKRKEELEKALEKLEEA 116 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 274
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=72.78 E-value=1.4e+02 Score=32.10 Aligned_cols=41 Identities=15% Similarity=0.179 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 002544 443 QVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSA 483 (910)
Q Consensus 443 e~~~e~~~~k~kl~~eleel~~~~ee~e~~~~~le~~~~~~ 483 (910)
.+..++.+..++....+..|..+++.+++++....+.+.-+
T Consensus 67 ~ak~eLqe~eek~e~~l~~Lq~ql~~l~akI~k~~~el~~L 107 (258)
T PF15397_consen 67 QAKAELQEWEEKEESKLSKLQQQLEQLDAKIQKTQEELNFL 107 (258)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344556666677777777777777777666665555433
No 275
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=72.19 E-value=1e+02 Score=30.05 Aligned_cols=34 Identities=21% Similarity=0.342 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 530 FSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELK 563 (910)
Q Consensus 530 ~~~~~~ele~ei~~~~~kl~~~e~ei~~l~~~le 563 (910)
.+....+....+...-.++++...+++.+..+|+
T Consensus 43 IErkKmeVrekVq~~LgrveEetkrLa~ireeLE 76 (159)
T PF04949_consen 43 IERKKMEVREKVQAQLGRVEEETKRLAEIREELE 76 (159)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444455555554444
No 276
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=72.12 E-value=59 Score=27.60 Aligned_cols=57 Identities=16% Similarity=0.285 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 579 QKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVA 635 (910)
Q Consensus 579 L~~el~dL~~~le~~~~~~~~lEk~~~~Le~e~~el~~~l~e~~~~~eE~e~~l~~~ 635 (910)
|+.++..|...++.+...+...+-..+.|..+.+....++........++..+++.+
T Consensus 3 Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L 59 (69)
T PF14197_consen 3 LEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEAL 59 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555555555555555555554444444444444444444
No 277
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=71.71 E-value=6.3 Score=35.94 Aligned_cols=73 Identities=25% Similarity=0.276 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 562 LKAAESKMRSYEVEISSQKLETKELSEKL-EAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKV 634 (910)
Q Consensus 562 lee~~~ki~~le~e~~~L~~el~dL~~~l-e~~~~~~~~lEk~~~~Le~e~~el~~~l~e~~~~~eE~e~~l~~ 634 (910)
+..-...+..++..+..+..++++|...+ ++++..+..-.+....++.....++.++.+....++.++.++..
T Consensus 3 l~~e~~~r~~ae~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~k~~~le~~l~e~~~~l~~lq~qL~~ 76 (100)
T PF06428_consen 3 LEEERERREEAEQEKEQIESELEELTASLFEEANKMVADARRERAALEEKNEQLEKQLKEKEALLESLQAQLKE 76 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTHHCHCCCHCTSSSSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566777777888888888888777 66777776666666666666666666544444444444333333
No 278
>PF14992 TMCO5: TMCO5 family
Probab=71.49 E-value=1.6e+02 Score=32.07 Aligned_cols=28 Identities=7% Similarity=0.272 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 002544 672 AVIERVQRQIESLERQKTDLTNEVNRIR 699 (910)
Q Consensus 672 ~~ie~~~~~ie~Le~e~~~Le~Ele~~~ 699 (910)
..+..+...+..++.++..+..++..+.
T Consensus 116 ~~lqql~~~~~~qE~ei~kve~d~~~v~ 143 (280)
T PF14992_consen 116 NKLQQLLESCASQEKEIAKVEDDYQQVH 143 (280)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444445555555555555554443
No 279
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=70.54 E-value=1e+02 Score=29.47 Aligned_cols=14 Identities=7% Similarity=0.318 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHHH
Q 002544 364 EDNMKLLKKQLEDS 377 (910)
Q Consensus 364 e~e~e~l~k~lee~ 377 (910)
...++.+...+...
T Consensus 49 ~kql~~vs~~l~~t 62 (126)
T PF07889_consen 49 SKQLEQVSESLSST 62 (126)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 280
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=69.64 E-value=1.7e+02 Score=31.71 Aligned_cols=83 Identities=12% Similarity=0.188 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 644 ELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSKVALLEARVEEREKEI 723 (910)
Q Consensus 644 ~~~e~l~~e~~~~~~e~~e~~r~~~e~~~~ie~~~~~ie~Le~e~~~Le~Ele~~~~~~~~~~~~~~elE~rl~e~eee~ 723 (910)
..++..+..+..+..+-..+..++..+..++++.+..+..|+..+=-...|++.+..++...+..+-+--+-+.=++.++
T Consensus 176 ~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~lY~~Y~~kfRNl~yLe~ql 255 (267)
T PF10234_consen 176 QQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKLYEIYVEKFRNLDYLEHQL 255 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 33444444455555556666666666667777777777777766666666777777766666665443334444444444
Q ss_pred HHH
Q 002544 724 ESL 726 (910)
Q Consensus 724 e~l 726 (910)
+..
T Consensus 256 e~~ 258 (267)
T PF10234_consen 256 EEY 258 (267)
T ss_pred HHH
Confidence 444
No 281
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=69.37 E-value=1.4e+02 Score=30.62 Aligned_cols=103 Identities=17% Similarity=0.205 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 540 EMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYK 619 (910)
Q Consensus 540 ei~~~~~kl~~~e~ei~~l~~~lee~~~ki~~le~e~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~e~~el~~~l~ 619 (910)
-++.+..++.+.+.-+.+....|...+..+............++..|..-+......+...+.-......++.+-...++
T Consensus 68 iveqLe~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L~~~l~~a~~nl~~a~~~a~~AQ~el~eK~qLLe 147 (188)
T PF05335_consen 68 IVEQLEQEVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQLETLKAALKAAQANLANAEQVAEGAQQELAEKTQLLE 147 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444555555666666666666666666777777777777777777777777777777777777777666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 002544 620 SEFERFEEVQERCKVAEKEAKKA 642 (910)
Q Consensus 620 e~~~~~eE~e~~l~~~e~e~~~~ 642 (910)
....+++.+...+.....++...
T Consensus 148 aAk~Rve~L~~QL~~Ar~D~~~t 170 (188)
T PF05335_consen 148 AAKRRVEELQRQLQAARADYEKT 170 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666665554443
No 282
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=69.25 E-value=2.4e+02 Score=33.19 Aligned_cols=16 Identities=19% Similarity=0.289 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 002544 737 TVKKLEDLLESERRSR 752 (910)
Q Consensus 737 ~i~~Le~~le~e~~~~ 752 (910)
++..++..+......+
T Consensus 299 ~l~~~~~~l~~a~~~l 314 (457)
T TIGR01000 299 KLLELESKIKSLKEDS 314 (457)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455555554444443
No 283
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=69.18 E-value=1.6e+02 Score=36.83 Aligned_cols=40 Identities=23% Similarity=0.351 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 537 KEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEI 576 (910)
Q Consensus 537 le~ei~~~~~kl~~~e~ei~~l~~~lee~~~ki~~le~e~ 576 (910)
++........-+.-++.++..++.++..++..+..+.+..
T Consensus 258 l~~k~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~ 297 (726)
T PRK09841 258 IARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQR 297 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3333333333444456666666666666666666666554
No 284
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=68.96 E-value=2.5e+02 Score=33.42 Aligned_cols=11 Identities=27% Similarity=0.501 Sum_probs=5.8
Q ss_pred HHHHHHHHHhc
Q 002544 166 GITESYLDAIN 176 (910)
Q Consensus 166 ~l~~~yv~ain 176 (910)
.|++.|++.|.
T Consensus 138 sy~EIYmEKi~ 148 (607)
T KOG0240|consen 138 SYFEIYMEKIR 148 (607)
T ss_pred EeehhhhhHHH
Confidence 34555555554
No 285
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=68.69 E-value=87 Score=32.13 Aligned_cols=13 Identities=15% Similarity=0.240 Sum_probs=5.4
Q ss_pred HHHHHhHhhhhHH
Q 002544 326 LATFLQQSSEGPI 338 (910)
Q Consensus 326 l~~fl~~~~~~~i 338 (910)
.-+++|.-+.+++
T Consensus 32 VKdvlq~LvDDgl 44 (188)
T PF03962_consen 32 VKDVLQSLVDDGL 44 (188)
T ss_pred HHHHHHHHhcccc
Confidence 4444444333333
No 286
>PRK09343 prefoldin subunit beta; Provisional
Probab=68.60 E-value=1.1e+02 Score=29.01 Aligned_cols=35 Identities=26% Similarity=0.265 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 002544 451 MEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQE 485 (910)
Q Consensus 451 ~k~kl~~eleel~~~~ee~e~~~~~le~~~~~~q~ 485 (910)
++..+..+++-+..++..++.+...+++.+..++.
T Consensus 72 ~~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~ 106 (121)
T PRK09343 72 VEKELKERKELLELRSRTLEKQEKKLREKLKELQA 106 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444433333333333333
No 287
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=68.58 E-value=2.1e+02 Score=32.31 Aligned_cols=27 Identities=30% Similarity=0.250 Sum_probs=11.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 464 SRSTAAEARLAAAREQALSAQEEVEEW 490 (910)
Q Consensus 464 ~~~ee~e~~~~~le~~~~~~q~Elee~ 490 (910)
..-.+++..+....-.+..++..+..+
T Consensus 75 ~~~~~a~~~L~~a~P~L~~A~~al~~l 101 (344)
T PF12777_consen 75 EIKEEAEEELAEAEPALEEAQEALKSL 101 (344)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 333344444444444444444444433
No 288
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=68.55 E-value=1.3e+02 Score=33.23 Aligned_cols=62 Identities=23% Similarity=0.247 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 556 TTLRLELKAAESKMRS-------YEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQK 617 (910)
Q Consensus 556 ~~l~~~lee~~~ki~~-------le~e~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~e~~el~~~ 617 (910)
.++...|.+++++... |..++..|.=++.-|...+++....+..+.++.+....++.-++..
T Consensus 80 r~lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~ 148 (302)
T PF09738_consen 80 RDLKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRA 148 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555444 4444444555555555555555544444444444444444444433
No 289
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=68.47 E-value=2.3e+02 Score=32.94 Aligned_cols=82 Identities=18% Similarity=0.219 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 692 TNEVNRIRESELEALSKVALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERRSRAAANAMAERLSLEVQSAQA 771 (910)
Q Consensus 692 e~Ele~~~~~~~~~~~~~~elE~rl~e~eee~e~l~~r~~~qr~~~i~~Le~~le~e~~~~~ea~~r~e~l~~ql~~~k~ 771 (910)
+.|+.++.+.+++...+.+-+..++.+.++.+... +.+..-.--.+..-+..++++.+.+..|+--.+++..++..++.
T Consensus 27 e~ef~rl~k~fed~~ek~~r~~ae~~~~~~~L~Ka-~tk~~~ldvklkha~~~vda~ik~rr~ae~d~~~~E~~i~~i~d 105 (604)
T KOG3564|consen 27 EDEFIRLRKDFEDFEEKWKRTDAELGKYKDLLAKA-ETKRSALDVKLKHARNQVDAEIKRRRRAEADCEKLETQIQLIKD 105 (604)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH-HHhhhhccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 34455555555544444444444444444444433 22222222234555556666666666665555655555555555
Q ss_pred HHH
Q 002544 772 KLD 774 (910)
Q Consensus 772 ~i~ 774 (910)
.+.
T Consensus 106 ~l~ 108 (604)
T KOG3564|consen 106 MLK 108 (604)
T ss_pred HHh
Confidence 443
No 290
>KOG0992 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.06 E-value=2.4e+02 Score=32.90 Aligned_cols=21 Identities=10% Similarity=0.004 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 002544 569 MRSYEVEISSQKLETKELSEK 589 (910)
Q Consensus 569 i~~le~e~~~L~~el~dL~~~ 589 (910)
+..+.++.+.+..+++.|...
T Consensus 233 lq~~~~ehkllee~~~rl~~~ 253 (613)
T KOG0992|consen 233 LQALIREHKLLEEHLERLHLQ 253 (613)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444433
No 291
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=67.44 E-value=2.6e+02 Score=33.05 Aligned_cols=19 Identities=11% Similarity=0.293 Sum_probs=8.4
Q ss_pred HHhhhHHHHHHHHHHHHHH
Q 002544 462 LKSRSTAAEARLAAAREQA 480 (910)
Q Consensus 462 l~~~~ee~e~~~~~le~~~ 480 (910)
|..++....+++..|+..+
T Consensus 307 L~qqV~qs~EKIa~LEqEK 325 (518)
T PF10212_consen 307 LAQQVQQSQEKIAKLEQEK 325 (518)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444433
No 292
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=67.26 E-value=2e+02 Score=31.60 Aligned_cols=29 Identities=28% Similarity=0.370 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 002544 675 ERVQRQIESLERQKTDLTNEVNRIRESEL 703 (910)
Q Consensus 675 e~~~~~ie~Le~e~~~Le~Ele~~~~~~~ 703 (910)
+.++..|..|+.-..-|+.+-..+...+.
T Consensus 295 ~~lq~kiq~LekLcRALq~ernel~~~~~ 323 (391)
T KOG1850|consen 295 ETLQKKIQRLEKLCRALQTERNELNKKLE 323 (391)
T ss_pred HHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 33333444444444444443333333333
No 293
>PF15372 DUF4600: Domain of unknown function (DUF4600)
Probab=67.08 E-value=1.2e+02 Score=29.00 Aligned_cols=54 Identities=15% Similarity=0.107 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 562 LKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLE 615 (910)
Q Consensus 562 lee~~~ki~~le~e~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~e~~el~ 615 (910)
.+.+..-+..|++++..|+.++.+..-.++...+..+......+..-.++....
T Consensus 53 ~~~l~~llkqLEkeK~~Le~qlk~~e~rLeQEsKAyhk~ndeRr~ylaEi~~~s 106 (129)
T PF15372_consen 53 VESLNQLLKQLEKEKRSLENQLKDYEWRLEQESKAYHKANDERRQYLAEISQTS 106 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhh
Confidence 366677788999999999999999999999999999988888887777776654
No 294
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=67.00 E-value=53 Score=32.93 Aligned_cols=58 Identities=22% Similarity=0.291 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 557 TLRLELKAAESKMRSYEVEISSQKLETKELSEKL--EAVNAKAQSFEREARIMEQDKVYL 614 (910)
Q Consensus 557 ~l~~~lee~~~ki~~le~e~~~L~~el~dL~~~l--e~~~~~~~~lEk~~~~Le~e~~el 614 (910)
.+..++..+...+..+....+.|..++..|.... +++...+..++.++..++..+..+
T Consensus 76 ~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l 135 (169)
T PF07106_consen 76 ELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKL 135 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444444444444444444444332 223333334444444444333333
No 295
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=66.85 E-value=73 Score=26.37 Aligned_cols=44 Identities=32% Similarity=0.401 Sum_probs=24.4
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 683 SLERQKTDLTNEVNRIRESELEALSKVALLEARVEEREKEIESL 726 (910)
Q Consensus 683 ~Le~e~~~Le~Ele~~~~~~~~~~~~~~elE~rl~e~eee~e~l 726 (910)
.-.+.+..+..++..++.....+.+++.+.+.+..++..+++.+
T Consensus 8 ~EirakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L 51 (61)
T PF08826_consen 8 AEIRAKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERL 51 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555666666666555555555555555555555555555
No 296
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=66.81 E-value=1.6e+02 Score=30.29 Aligned_cols=51 Identities=22% Similarity=0.304 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 564 AAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYL 614 (910)
Q Consensus 564 e~~~ki~~le~e~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~e~~el 614 (910)
.++..+..++..+..|+.+..-+....+...+.+..++.....+..++...
T Consensus 128 ~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~ 178 (190)
T PF05266_consen 128 ELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENA 178 (190)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444433333334444444444444444333333333
No 297
>cd07673 F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 2 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. The specific function of FCH domain Only 2 (FCHO2) is still unknown. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO1 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=66.71 E-value=2e+02 Score=31.32 Aligned_cols=48 Identities=6% Similarity=0.072 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 002544 424 SKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEA 471 (910)
Q Consensus 424 ~~qle~~k~e~~~~kkk~Ee~~~e~~~~k~kl~~eleel~~~~ee~e~ 471 (910)
.++++++...+......|...+..++..+......+...=..+.+.++
T Consensus 156 ~k~leK~~~k~~ka~~~Y~~~v~~l~~~~~~~~~~m~~~~~~~Q~~Ee 203 (269)
T cd07673 156 QREIEKAAVKSKKATESYKLYVEKYALAKADFEQKMTETAQKFQDIEE 203 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666677777766666666666666665555555555
No 298
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=66.60 E-value=3.3e+02 Score=33.79 Aligned_cols=18 Identities=11% Similarity=0.200 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 002544 757 AMAERLSLEVQSAQAKLD 774 (910)
Q Consensus 757 ~r~e~l~~ql~~~k~~i~ 774 (910)
....+|.+++..+++.|.
T Consensus 300 ~~r~kL~N~i~eLkGnIR 317 (670)
T KOG0239|consen 300 EERRKLHNEILELKGNIR 317 (670)
T ss_pred HHHHHHHHHHHHhhcCce
Confidence 334445555555555554
No 299
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=65.82 E-value=3.5e+02 Score=33.92 Aligned_cols=6 Identities=0% Similarity=0.113 Sum_probs=2.7
Q ss_pred cccccc
Q 002544 799 HGKRAR 804 (910)
Q Consensus 799 ~~~~~~ 804 (910)
.|+|-=
T Consensus 559 ~G~rVL 564 (726)
T PRK09841 559 SDQKVL 564 (726)
T ss_pred CCCeEE
Confidence 454433
No 300
>PRK11519 tyrosine kinase; Provisional
Probab=65.73 E-value=2.6e+02 Score=35.01 Aligned_cols=34 Identities=21% Similarity=0.349 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 544 KATKIEHAEQCLTTLRLELKAAESKMRSYEVEIS 577 (910)
Q Consensus 544 ~~~kl~~~e~ei~~l~~~lee~~~ki~~le~e~~ 577 (910)
...-+.=++.++..++.+++.++..+..+..+..
T Consensus 265 a~~a~~fL~~ql~~l~~~L~~aE~~l~~fr~~~~ 298 (719)
T PRK11519 265 ASKSLAFLAQQLPEVRSRLDVAENKLNAFRQDKD 298 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3334444567777777777777777777766544
No 301
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=65.21 E-value=65 Score=26.12 Aligned_cols=47 Identities=19% Similarity=0.272 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 397 KLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQ 443 (910)
Q Consensus 397 ~~lee~~~~~~~l~~~~~~Le~e~~~L~~qle~~k~e~~~~kkk~Ee 443 (910)
.+++++...+..|..+...|..++..+...+..++.+......+++.
T Consensus 3 akid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN 49 (56)
T PF04728_consen 3 AKIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLDN 49 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35666666777777777777777777777777666666666555543
No 302
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=65.07 E-value=2.6e+02 Score=32.12 Aligned_cols=303 Identities=16% Similarity=0.188 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 381 KSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSS-LSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEI 459 (910)
Q Consensus 381 ~~e~~k~le~~i~el~~~lee~~~~~~~l~~~~~~Le~e~~~-L~~qle~~k~e~~~~kkk~Ee~~~e~~~~k~kl~~el 459 (910)
.......-+........-..+..+-+..........+.+... |..-+. .+..|+..++..+.+ +..++
T Consensus 5 n~~~~~~a~~~r~~s~~lr~es~~l~~et~~~t~~~q~~~~~~L~~Ri~----di~~wk~eL~~~l~~-------~~~Ei 73 (384)
T PF03148_consen 5 NQQLYNNAEAQRNDSERLRQESRRLINETDARTKWDQYDSNKRLRQRIR----DIRFWKNELERELEE-------LDEEI 73 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH-------HHHHH
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 460 EVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEE 539 (910)
Q Consensus 460 eel~~~~ee~e~~~~~le~~~~~~q~Elee~~~k~e~~~~~~k~~lek~~~~~e~~~~e~q~~~~~~~~E~~~~~~ele~ 539 (910)
..|......++..+..+...+.-.+.=+. .+..|...+--.-.++..+-+-.........-+...+..+.+
T Consensus 74 ~~L~~~K~~le~aL~~~~~pl~i~~ecL~---------~R~~R~~~dlv~D~ve~eL~kE~~li~~~~~lL~~~l~~~~e 144 (384)
T PF03148_consen 74 DLLEEEKRRLEKALEALRKPLSIAQECLS---------LREKRPGIDLVHDEVEKELLKEVELIENIKRLLQRTLEQAEE 144 (384)
T ss_pred HHHHHHHHHHHHHHHHhcCcHHHHHHHHH---------HHhCCCCcccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHH-------------------------------------------HHHHHHHHHHHHHHHHH
Q 002544 540 EMKEKATKIEHAEQCLTTLR-------------------------------------------LELKAAESKMRSYEVEI 576 (910)
Q Consensus 540 ei~~~~~kl~~~e~ei~~l~-------------------------------------------~~lee~~~ki~~le~e~ 576 (910)
++..++.--..++..+.+-. ..+..+...+..-..-+
T Consensus 145 Ql~~lr~ar~~Le~Dl~dK~~A~~ID~~~~~L~~~S~~i~~~~~~~r~~~~~~tp~~W~~~s~~ni~~a~~e~~~S~~LR 224 (384)
T PF03148_consen 145 QLRLLRAARYRLEKDLSDKFEALEIDTQCLSLNNNSTNISYKPGSTRIPKNSSTPESWEEFSNENIQRAEKERQSSAQLR 224 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCCcccCCcccccccCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 577 SSQKLETKELSEKLEAVNAKAQ-SFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAA 655 (910)
Q Consensus 577 ~~L~~el~dL~~~le~~~~~~~-~lEk~~~~Le~e~~el~~~l~e~~~~~eE~e~~l~~~e~e~~~~~~~~e~l~~e~~~ 655 (910)
..+..-+......+......+. .|.+++.....-+.+|+.++......+...+..+..++..+.....-..-+...++.
T Consensus 225 ~~i~~~l~~~~~dl~~Q~~~vn~al~~Ri~et~~ak~~Le~ql~~~~~ei~~~e~~i~~L~~ai~~k~~~lkvaqTRL~~ 304 (384)
T PF03148_consen 225 EDIDSILEQTANDLRAQADAVNAALRKRIHETQEAKNELEWQLKKTLQEIAEMEKNIEDLEKAIRDKEGPLKVAQTRLEN 304 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhh
Q ss_pred -----------------HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 002544 656 -----------------ARKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESEL 703 (910)
Q Consensus 656 -----------------~~~e~~e~~r~~~e~~~~ie~~~~~ie~Le~e~~~Le~Ele~~~~~~~ 703 (910)
+-.|+..+..-+..+...+..++..+..|.....+|+.+|..-...+.
T Consensus 305 R~~RP~vElcrD~~q~~L~~Ev~~l~~~i~~L~~~L~~a~~~l~~L~~~~~~Le~di~~K~~sL~ 369 (384)
T PF03148_consen 305 RTQRPNVELCRDPPQYGLIEEVKELRESIEALQEKLDEAEASLQKLERTRLRLEEDIAVKNNSLF 369 (384)
T ss_pred HhcCCchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 303
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=64.88 E-value=13 Score=41.03 Aligned_cols=60 Identities=13% Similarity=0.204 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 557 TLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQ 616 (910)
Q Consensus 557 ~l~~~lee~~~ki~~le~e~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~e~~el~~ 616 (910)
.+...+..+...+..+...+..|...|.++...+.+....+..+...+..+...+..+..
T Consensus 39 aLEssv~sL~~SVs~lss~iSdLss~L~~l~~sl~~~~s~L~sLsstV~~lq~Sl~~lss 98 (326)
T PF04582_consen 39 ALESSVASLSDSVSSLSSTISDLSSDLQDLASSLADMTSELNSLSSTVTSLQSSLSSLSS 98 (326)
T ss_dssp ------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333333333333444444444444444444444444444444444444444444444433
No 304
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=64.67 E-value=2.2e+02 Score=31.15 Aligned_cols=28 Identities=29% Similarity=0.493 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 002544 673 VIERVQRQIESLERQKTDLTNEVNRIRE 700 (910)
Q Consensus 673 ~ie~~~~~ie~Le~e~~~Le~Ele~~~~ 700 (910)
.+..+++++..|..++.-|+.|+.+++.
T Consensus 60 avrdYqrq~~elneEkrtLeRELARaKV 87 (351)
T PF07058_consen 60 AVRDYQRQVQELNEEKRTLERELARAKV 87 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3444555555555555566666665554
No 305
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=64.46 E-value=1.7e+02 Score=29.92 Aligned_cols=30 Identities=13% Similarity=0.178 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 557 TLRLELKAAESKMRSYEVEISSQKLETKEL 586 (910)
Q Consensus 557 ~l~~~lee~~~ki~~le~e~~~L~~el~dL 586 (910)
.++..+..+...+..+...+..++..+..+
T Consensus 66 ~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~ 95 (188)
T PF03962_consen 66 KRQNKLEKLQKEIEELEKKIEELEEKIEEA 95 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444444
No 306
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=64.41 E-value=2.6e+02 Score=31.92 Aligned_cols=6 Identities=0% Similarity=0.014 Sum_probs=2.3
Q ss_pred chhhhh
Q 002544 883 FGAELL 888 (910)
Q Consensus 883 ~~~~~~ 888 (910)
|-+++.
T Consensus 260 HtdkVt 265 (459)
T KOG0288|consen 260 HTDKVT 265 (459)
T ss_pred ccccee
Confidence 333333
No 307
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=64.21 E-value=97 Score=26.87 Aligned_cols=58 Identities=16% Similarity=0.292 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 385 LKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYD 442 (910)
Q Consensus 385 ~k~le~~i~el~~~lee~~~~~~~l~~~~~~Le~e~~~L~~qle~~k~e~~~~kkk~E 442 (910)
+...-+.|.=|+.+++++......+..+...+....+.|..+.+.++++-..|..++-
T Consensus 13 IqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr 70 (79)
T PRK15422 13 VQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQ 70 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555556666666666666666666666666666666777777777765543
No 308
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=64.11 E-value=2.6e+02 Score=31.82 Aligned_cols=11 Identities=18% Similarity=0.208 Sum_probs=6.1
Q ss_pred ccccCcchhHh
Q 002544 815 VQEMDTNDKVL 825 (910)
Q Consensus 815 ~~~~~~~~~~~ 825 (910)
||||...-.+.
T Consensus 383 vq~~~~t~g~~ 393 (552)
T KOG2129|consen 383 VQDQQSTSGYR 393 (552)
T ss_pred ecccccccccc
Confidence 67776644333
No 309
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=64.04 E-value=2.3e+02 Score=31.15 Aligned_cols=94 Identities=18% Similarity=0.204 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 514 RTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAV 593 (910)
Q Consensus 514 ~~~~e~q~~~~~~~~E~~~~~~ele~ei~~~~~kl~~~e~ei~~l~~~lee~~~ki~~le~e~~~L~~el~dL~~~le~~ 593 (910)
....+.|+.-.+...|...+....+......... ...-+.+.+..+..-.++...+...+..|...+..|..++...
T Consensus 80 elCRelQr~nk~~keE~~~q~k~eEerRkea~~~---fqvtL~diqktla~~~~~n~klre~NieL~eKlkeL~eQy~~r 156 (391)
T KOG1850|consen 80 ELCRELQRANKQTKEEACAQMKKEEERRKEAVEQ---FQVTLKDIQKTLAEGRSKNDKLREDNIELSEKLKELGEQYEER 156 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555554443333 2344556666666666777777777777777777777777666
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 002544 594 NAKAQSFEREARIMEQDK 611 (910)
Q Consensus 594 ~~~~~~lEk~~~~Le~e~ 611 (910)
...+......+. +..++
T Consensus 157 e~hidk~~e~ke-l~~ql 173 (391)
T KOG1850|consen 157 EKHIDKQIQKKE-LWEQL 173 (391)
T ss_pred HHHHHHHHHHHH-HHHHH
Confidence 555555544444 43333
No 310
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=63.26 E-value=2.8e+02 Score=31.89 Aligned_cols=21 Identities=29% Similarity=0.240 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 002544 667 AMERMAVIERVQRQIESLERQ 687 (910)
Q Consensus 667 ~~e~~~~ie~~~~~ie~Le~e 687 (910)
+..++.+++-...+.+.|-..
T Consensus 248 l~Sle~q~~~s~~qldkL~kt 268 (447)
T KOG2751|consen 248 LDSLEAQIEYSQAQLDKLRKT 268 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 333444444444444444444
No 311
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=62.38 E-value=2.1e+02 Score=30.23 Aligned_cols=52 Identities=10% Similarity=0.147 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 002544 420 SSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEA 471 (910)
Q Consensus 420 ~~~L~~qle~~k~e~~~~kkk~Ee~~~e~~~~k~kl~~eleel~~~~ee~e~ 471 (910)
.+-+...+..+...+...+..|...+..++..+.....++..+=..+.+.++
T Consensus 152 ~eK~~~k~~k~~~~~~~~~~~Y~~~v~~~~~~~~~~~~~~~~~~~~~Q~lEe 203 (236)
T cd07651 152 LEKNNAKLNKAQSSINSSRRDYQNAVKALRELNEIWNREWKAALDDFQDLEE 203 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555556666666667777777777777777777777777677766666
No 312
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=61.99 E-value=2.4e+02 Score=30.59 Aligned_cols=42 Identities=14% Similarity=0.159 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHhhhccCCCC-hHHHHHHHHhHhhhhHHHHH
Q 002544 300 DNVVKVLDGLISEYETSCHGPG-KWQKLATFLQQSSEGPILDL 341 (910)
Q Consensus 300 ~~~~~~~~~~~~~Y~~~~~gp~-k~~~l~~fl~~~~~~~il~~ 341 (910)
..|...++.+...|=.-+.+.. |.+.+-.|+..++++-|..+
T Consensus 96 ~S~~silq~If~KHGDIAsNc~lkS~~~RS~yLe~Lc~IIqeL 138 (269)
T PF05278_consen 96 PSQVSILQKIFEKHGDIASNCKLKSQQFRSYYLECLCDIIQEL 138 (269)
T ss_pred HhHHHHHHHHHHhCccHhhccccCcHHHHHHHHHHHHHHHHHH
Confidence 3667778888888765543333 66777777777776666544
No 313
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=61.31 E-value=2.4e+02 Score=30.54 Aligned_cols=14 Identities=14% Similarity=0.513 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHH
Q 002544 430 LKNEISDWKRKYDQ 443 (910)
Q Consensus 430 ~k~e~~~~kkk~Ee 443 (910)
......+|+-..|.
T Consensus 196 s~tDa~eW~lEvER 209 (384)
T KOG0972|consen 196 SNTDAIEWKLEVER 209 (384)
T ss_pred hcchHHHHHHHHHH
Confidence 33455566655443
No 314
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=60.48 E-value=1.1e+02 Score=26.14 Aligned_cols=50 Identities=20% Similarity=0.318 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 385 LKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEI 434 (910)
Q Consensus 385 ~k~le~~i~el~~~lee~~~~~~~l~~~~~~Le~e~~~L~~qle~~k~e~ 434 (910)
.+.|..+..+....+..++........+...|...+..|..++..+..++
T Consensus 16 q~~y~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql 65 (70)
T PF04899_consen 16 QQSYEKQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQL 65 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444444444333
No 315
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=60.19 E-value=3.5e+02 Score=31.94 Aligned_cols=30 Identities=13% Similarity=0.158 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 576 ISSQKLETKELSEKLEAVNAKAQSFEREAR 605 (910)
Q Consensus 576 ~~~L~~el~dL~~~le~~~~~~~~lEk~~~ 605 (910)
...|..+|..|...-..+...+.+|.+.++
T Consensus 167 ~~~L~~qi~~L~~~n~~i~~ea~nLt~ALk 196 (475)
T PRK10361 167 RHTLAHEIRNLQQLNAQMAQEAINLTRALK 196 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 455555566665555555555666655554
No 316
>PLN03188 kinesin-12 family protein; Provisional
Probab=59.94 E-value=5.3e+02 Score=34.01 Aligned_cols=23 Identities=17% Similarity=0.397 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHhhhhchhhhh
Q 002544 768 SAQAKLDEMQQELTKARLNETAL 790 (910)
Q Consensus 768 ~~k~~i~~l~~e~~~~~~~~~~~ 790 (910)
+-...|.-|-+.+.+-|+...||
T Consensus 1240 kh~~e~~t~~q~~aes~l~~~~~ 1262 (1320)
T PLN03188 1240 KHENEISTLNQLVAESRLPKEAI 1262 (1320)
T ss_pred HHHHHHHHHHHHHhhccCChhhc
Confidence 34455666666677777776664
No 317
>KOG2150 consensus CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=59.66 E-value=3.7e+02 Score=32.12 Aligned_cols=83 Identities=14% Similarity=0.213 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 431 KNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAI 510 (910)
Q Consensus 431 k~e~~~~kkk~Ee~~~e~~~~k~kl~~eleel~~~~ee~e~~~~~le~~~~~~q~Elee~~~k~e~~~~~~k~~lek~~~ 510 (910)
++++...-+|..+.++...+.-+++..-. --++.+-+++-+..-=+.+.++..++-.|...-|. +.|..|--.+.
T Consensus 7 q~eIdr~lkKv~Egve~Fd~i~ek~~~~~--n~sqkeK~e~DLKkEIKKLQRlRdQIKtW~ss~dI---KDK~~L~d~Rr 81 (575)
T KOG2150|consen 7 QQEIDRCLKKVDEGVEIFDEIYEKLHSAN--NVSQKEKLESDLKKEIKKLQRLRDQIKTWQSSSDI---KDKDSLLDNRR 81 (575)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHhcC--ChhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc---ccHHHHHHHHH
Confidence 34444555555555544444444443322 12334444444444445555666666677766555 44444444444
Q ss_pred HHHHHHHH
Q 002544 511 VQERTSKE 518 (910)
Q Consensus 511 ~~e~~~~e 518 (910)
.++..++.
T Consensus 82 lIE~~MEr 89 (575)
T KOG2150|consen 82 LIEQRMER 89 (575)
T ss_pred HHHHHHHH
Confidence 44434433
No 318
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=59.33 E-value=1.4e+02 Score=27.28 Aligned_cols=65 Identities=6% Similarity=0.186 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 548 IEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKV 612 (910)
Q Consensus 548 l~~~e~ei~~l~~~lee~~~ki~~le~e~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~e~~ 612 (910)
+..+......|+..+-+-..+...+...++.-...|..+...++.+.-.-..|.+++..|..++.
T Consensus 7 YsKLraQ~~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~ 71 (102)
T PF10205_consen 7 YSKLRAQNQVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELE 71 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445566666666666666666666666666666666666666666666666665555555
No 319
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=59.16 E-value=3.6e+02 Score=31.83 Aligned_cols=23 Identities=17% Similarity=0.303 Sum_probs=13.5
Q ss_pred hhhchhhhhcchhhhhhccccccccc
Q 002544 782 KARLNETALGSKLRAVSHGKRARADD 807 (910)
Q Consensus 782 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 (910)
++.-|=|.++.|..|-+ ++|+++
T Consensus 501 siq~nKtiqn~kfntEt---k~R~ee 523 (531)
T PF15450_consen 501 SIQTNKTIQNLKFNTET---KLRTEE 523 (531)
T ss_pred HHHHHHHHHhcccchHH---HHHHHH
Confidence 45556666776666532 455555
No 320
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=59.15 E-value=1.6e+02 Score=27.79 Aligned_cols=33 Identities=27% Similarity=0.397 Sum_probs=21.0
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 459 IEVLKSRSTAAEARLAAAREQALSAQEEVEEWK 491 (910)
Q Consensus 459 leel~~~~ee~e~~~~~le~~~~~~q~Elee~~ 491 (910)
..+|..+.+.++-++..++++-.+++.++++++
T Consensus 72 ~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq 104 (119)
T COG1382 72 VDELEERKETLELRIKTLEKQEEKLQERLEELQ 104 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666677777777766666666444
No 321
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=58.66 E-value=1.4e+02 Score=26.96 Aligned_cols=45 Identities=22% Similarity=0.102 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 550 HAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVN 594 (910)
Q Consensus 550 ~~e~ei~~l~~~lee~~~ki~~le~e~~~L~~el~dL~~~le~~~ 594 (910)
.++..+..+..+...+..++-...+.+..+..++.-|...+..-.
T Consensus 28 ~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~ 72 (96)
T PF08647_consen 28 ILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSS 72 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhH
Confidence 333334444444444444444444444444444444444433333
No 322
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=58.63 E-value=4.4e+02 Score=32.68 Aligned_cols=35 Identities=14% Similarity=0.150 Sum_probs=18.5
Q ss_pred HHHHHHhccCCCccc------CCcccChHHHHHHHHHHHHH
Q 002544 140 ALTKFVFERTRPKQV------GATVLTGPVLIGITESYLDA 174 (910)
Q Consensus 140 ~l~~~i~~~~~pK~i------~G~~ltg~~l~~l~~~yv~a 174 (910)
.+...||+++.|-.. .|+|-+...+..++..|++.
T Consensus 137 ~~~~~iy~~LT~werV~~aR~p~RP~~~Dyi~~i~ddf~EL 177 (762)
T PLN03229 137 QALKDLYTHLTPIQRVNIARHPNRPTFLDHIFNITDKFVEL 177 (762)
T ss_pred HHHHHHHccCCHHHHHHHHhCCCCCcHHHHHHHHHHHHHHh
Confidence 345556665544331 45555555555566666655
No 323
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=58.39 E-value=3.4e+02 Score=31.22 Aligned_cols=31 Identities=16% Similarity=0.221 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002544 751 SRAAANAMAERLSLEVQSAQAKLDEMQQELT 781 (910)
Q Consensus 751 ~~~ea~~r~e~l~~ql~~~k~~i~~l~~e~~ 781 (910)
.+.+......++....-.++..++.+..++.
T Consensus 408 ~r~e~~~~i~aI~l~~~llk~HV~~y~AEl~ 438 (446)
T KOG4438|consen 408 GREELESQIVAITLECILLKMHVELYEAELK 438 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444445555555555555443
No 324
>TIGR03582 EF_0829 PRD domain protein EF_0829/AHA_3910. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. This protein contains a PRD domain (see pfam00874). The function is unknown.
Probab=58.18 E-value=44 Score=30.89 Aligned_cols=89 Identities=13% Similarity=0.134 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHHhccCCCcccCCcccChHHHHHHHHHHHHHhcCCC-CCCccch-HHHHHHHHHHHHHHHHHHHHHhh
Q 002544 132 PEFRAGLDALTKFVFERTRPKQVGATVLTGPVLIGITESYLDAINNGA-VPTISSS-WQSVEEAECRRAYDSATETYMST 209 (910)
Q Consensus 132 ~eF~~~~~~l~~~i~~~~~pK~i~G~~ltg~~l~~l~~~yv~ain~g~-vP~i~sa-~~~~~~~e~~~a~~~A~~~Y~~~ 209 (910)
+.+..-++..+..|...+....|.-..+.|.||.+-+...+.-...|. +|.+... |.-+.. .++.+....
T Consensus 11 ~~~~~~~~~~~~~V~~~L~~~~I~~~~~Q~qMliTHlaaml~Rs~~GE~lp~vD~~Lf~EIs~--------~sl~la~~v 82 (107)
T TIGR03582 11 SENPELLVQVIQQTENLLREEHIVPTEVQKQMLISHLNAMVYRSTTGETLPEVDRSLFDEISK--------ESIKLAEEV 82 (107)
T ss_pred hhhHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHHHcCCcCCccCHHHHHHHHH--------HHHHHHHHH
Confidence 455566666666666665555665667889999999999998888885 8988744 333322 455555443
Q ss_pred ccc--CCCCChHHHHHHHHHH
Q 002544 210 FDR--SKPPEEVALGEAHEAA 228 (910)
Q Consensus 210 m~~--~~~~~e~~L~~~H~~~ 228 (910)
+.. ..|++|.-|+..|-+.
T Consensus 83 ~~~f~~L~~~E~~llsvhfe~ 103 (107)
T TIGR03582 83 VAALGNLAEDEAYLLSVHFEV 103 (107)
T ss_pred HHHhcCCChhhHHHHHHhhhh
Confidence 332 4577888899999654
No 325
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=58.16 E-value=3.7e+02 Score=31.59 Aligned_cols=43 Identities=14% Similarity=0.220 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 569 MRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDK 611 (910)
Q Consensus 569 i~~le~e~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~e~ 611 (910)
+..+......+..++.++...+....-.+..+...+..++..+
T Consensus 287 i~~Lr~~~~~~~~~~~~l~~~~~~~~p~~~~~~~q~~~~~~~~ 329 (458)
T COG3206 287 IQDLRQQYAQVRQQIADLSTELGAKHPQLVALEAQLAELRQQI 329 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccChHHHhHHHHHHHHHHHH
Confidence 4455555555555555555555555444444444444444443
No 326
>PF15456 Uds1: Up-regulated During Septation
Probab=57.70 E-value=1.8e+02 Score=27.78 Aligned_cols=39 Identities=13% Similarity=0.302 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 554 CLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAV 593 (910)
Q Consensus 554 ei~~l~~~lee~~~ki~~le~e~~~L~~el~dL~~~le~~ 593 (910)
++.+++.++..+.++|+.+.+... ++..+.++...+...
T Consensus 23 EVe~LKkEl~~L~~R~~~lr~kl~-le~k~RdAa~sl~~l 61 (124)
T PF15456_consen 23 EVEELKKELRSLDSRLEYLRRKLA-LESKIRDAAHSLSRL 61 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHh
Confidence 455555566666666666655555 555555555444443
No 327
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=57.12 E-value=4.5e+02 Score=32.31 Aligned_cols=30 Identities=27% Similarity=0.307 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 623 ERFEEVQERCKVAEKEAKKATELADRERAE 652 (910)
Q Consensus 623 ~~~eE~e~~l~~~e~e~~~~~~~~e~l~~e 652 (910)
.+++++...|..++++...-.+.+.....+
T Consensus 160 ~kLeelr~~L~~L~~ek~~Rlekv~~~~~~ 189 (660)
T KOG4302|consen 160 EKLEELREHLNELQKEKSDRLEKVLELKEE 189 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555544444444444444
No 328
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=57.02 E-value=3.9e+02 Score=31.54 Aligned_cols=9 Identities=11% Similarity=0.327 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 002544 738 VKKLEDLLE 746 (910)
Q Consensus 738 i~~Le~~le 746 (910)
+..+|..|+
T Consensus 389 ~~klG~~L~ 397 (475)
T PRK10361 389 MSAIGQSLD 397 (475)
T ss_pred HHHHHHHHH
Confidence 333333333
No 329
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=57.00 E-value=1.5e+02 Score=26.73 Aligned_cols=10 Identities=10% Similarity=0.159 Sum_probs=3.5
Q ss_pred HHHHHHHHHH
Q 002544 603 EARIMEQDKV 612 (910)
Q Consensus 603 ~~~~Le~e~~ 612 (910)
.+..++.++.
T Consensus 70 ~~~~~~~~i~ 79 (106)
T PF01920_consen 70 RIEKLEKEIK 79 (106)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 330
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=56.92 E-value=4.3e+02 Score=32.05 Aligned_cols=11 Identities=18% Similarity=-0.100 Sum_probs=5.1
Q ss_pred HHHHHHHHHHH
Q 002544 750 RSRAAANAMAE 760 (910)
Q Consensus 750 ~~~~ea~~r~e 760 (910)
....++.+|++
T Consensus 559 dW~~~ar~~le 569 (582)
T PF09731_consen 559 DWLKEARRRLE 569 (582)
T ss_pred HHHHHHHHHHH
Confidence 44444444444
No 331
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=56.92 E-value=2.4e+02 Score=28.99 Aligned_cols=10 Identities=20% Similarity=0.102 Sum_probs=4.9
Q ss_pred CCCChHHHHH
Q 002544 318 HGPGKWQKLA 327 (910)
Q Consensus 318 ~gp~k~~~l~ 327 (910)
.+|.+|..|.
T Consensus 78 ~C~ERGlLL~ 87 (189)
T PF10211_consen 78 DCPERGLLLL 87 (189)
T ss_pred CcHHHhHHHH
Confidence 4455555443
No 332
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=56.30 E-value=3.8e+02 Score=31.24 Aligned_cols=50 Identities=20% Similarity=0.264 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 677 VQRQIESLERQKTDLTNEVNRIRESELEALSKVALLEARVEEREKEIESL 726 (910)
Q Consensus 677 ~~~~ie~Le~e~~~Le~Ele~~~~~~~~~~~~~~elE~rl~e~eee~e~l 726 (910)
.-..+..|+.++-.++.++..+........-.+..+..++..++.+|...
T Consensus 284 ~~~lI~~Le~qLa~~~aeL~~L~~~~~p~sPqV~~l~~rI~aLe~QIa~e 333 (434)
T PRK15178 284 IYQLIAGFETQLAEAKAEYAQLMVNGLDQNPLIPRLSAKIKVLEKQIGEQ 333 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHH
Confidence 33344445555555555555554332222222344555555555555544
No 333
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=56.21 E-value=2.8e+02 Score=29.62 Aligned_cols=21 Identities=19% Similarity=0.319 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 002544 735 ASTVKKLEDLLESERRSRAAA 755 (910)
Q Consensus 735 ~~~i~~Le~~le~e~~~~~ea 755 (910)
-.+|..+...|..+..++..+
T Consensus 203 ~~Ei~~lk~~l~~e~~~R~~~ 223 (247)
T PF06705_consen 203 LEEIAALKNALALESQEREQS 223 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 346666666776666665544
No 334
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=56.19 E-value=3.4e+02 Score=30.60 Aligned_cols=11 Identities=27% Similarity=0.335 Sum_probs=6.1
Q ss_pred eEEEeeccccc
Q 002544 49 FVWLLRDFYLD 59 (910)
Q Consensus 49 f~WlvRDf~l~ 59 (910)
|+|.---|.+.
T Consensus 33 ~~~~k~~~~~~ 43 (593)
T KOG4807|consen 33 SQWKKHWFVLT 43 (593)
T ss_pred HHHHHHHHHHh
Confidence 66665555543
No 335
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=55.61 E-value=2.7e+02 Score=29.22 Aligned_cols=44 Identities=14% Similarity=0.238 Sum_probs=28.6
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 456 CSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVR 499 (910)
Q Consensus 456 ~~eleel~~~~ee~e~~~~~le~~~~~~q~Elee~~~k~e~~~~ 499 (910)
...|..++..+-..-+....+++++..++..+.+|..+-..++.
T Consensus 37 ~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~ 80 (219)
T TIGR02977 37 EDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALS 80 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33555555555566666667777777778888877766555543
No 336
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=55.40 E-value=1.6e+02 Score=26.70 Aligned_cols=63 Identities=21% Similarity=0.240 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 555 LTTLRLELKAAESKMRSYEVEISSQKLETKELS-----EKLEAVNAKAQSFEREARIMEQDKVYLEQK 617 (910)
Q Consensus 555 i~~l~~~lee~~~ki~~le~e~~~L~~el~dL~-----~~le~~~~~~~~lEk~~~~Le~e~~el~~~ 617 (910)
+......+.....++..+...+..+...+.... ..+......+..+...+......+..++..
T Consensus 7 l~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~ 74 (123)
T PF02050_consen 7 LAEAQQELQEAEEQLEQLQQERQEYQEQLSESQQGVSVAQLRNYQRYISALEQAIQQQQQELERLEQE 74 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT-----SGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444 344444444444444444444444444333
No 337
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=55.36 E-value=2.1e+02 Score=27.92 Aligned_cols=55 Identities=25% Similarity=0.218 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 672 AVIERVQRQIESLERQKTDLTNEVNRIRESELEALSKVALLEARVEEREKEIESL 726 (910)
Q Consensus 672 ~~ie~~~~~ie~Le~e~~~Le~Ele~~~~~~~~~~~~~~elE~rl~e~eee~e~l 726 (910)
..|+..++++..+..-...-+.|+......+.++......|-.++-++-.+.+.+
T Consensus 91 kkID~vNreLkpl~~~cqKKEkEykealea~nEknkeK~~Lv~~L~eLv~eSE~~ 145 (159)
T PF04949_consen 91 KKIDSVNRELKPLGQSCQKKEKEYKEALEAFNEKNKEKAQLVTRLMELVSESERL 145 (159)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444544455555555555555555555455555555544444444
No 338
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=54.63 E-value=3e+02 Score=29.51 Aligned_cols=71 Identities=14% Similarity=0.186 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 002544 639 AKKATELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSKV 709 (910)
Q Consensus 639 ~~~~~~~~e~l~~e~~~~~~e~~e~~r~~~e~~~~ie~~~~~ie~Le~e~~~Le~Ele~~~~~~~~~~~~~ 709 (910)
++.+..++...+..+.....+...+..++..+..++++.+..++.|+...=-...|+++...++..++.++
T Consensus 114 Iq~i~~~~q~~~~~Lnnvasdea~L~~Kierrk~ElEr~rkRle~LqsiRP~~MdEyE~~EeeLqkly~~Y 184 (338)
T KOG3647|consen 114 IQAIQVRLQSSRAQLNNVASDEAALGSKIERRKAELERTRKRLEALQSIRPAHMDEYEDCEEELQKLYQRY 184 (338)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555666666666667777777777777777777777777776666677777776666555543
No 339
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=54.48 E-value=1.5e+02 Score=25.92 Aligned_cols=47 Identities=17% Similarity=0.165 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 542 KEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSE 588 (910)
Q Consensus 542 ~~~~~kl~~~e~ei~~l~~~lee~~~ki~~le~e~~~L~~el~dL~~ 588 (910)
+.++.++....+++..++..-.+.+.++.+--.++..++..+-+|..
T Consensus 7 d~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~ 53 (79)
T PF08581_consen 7 DAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQ 53 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444333334444444444444444444444433333333333
No 340
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=54.40 E-value=2.1e+02 Score=27.68 Aligned_cols=33 Identities=12% Similarity=0.227 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 577 SSQKLETKELSEKLEAVNAKAQSFEREARIMEQ 609 (910)
Q Consensus 577 ~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~ 609 (910)
...+.++.+|..=+......+..+..+++.|-.
T Consensus 80 ~~~q~EldDLL~ll~Dle~K~~kyk~rLk~LG~ 112 (136)
T PF04871_consen 80 KEAQSELDDLLVLLGDLEEKRKKYKERLKELGE 112 (136)
T ss_pred HhhhhhHHHHHHHHHhHHHHHHHHHHHHHHcCC
Confidence 455666666666666666666666655555433
No 341
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=53.23 E-value=4.1e+02 Score=30.68 Aligned_cols=48 Identities=17% Similarity=0.108 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhhhhcchhhhhhccccccc
Q 002544 754 AANAMAERLSLEVQSAQAKLDEMQQELTKARLNETALGSKLRAVSHGKRARA 805 (910)
Q Consensus 754 ea~~r~e~l~~ql~~~k~~i~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 (910)
.+...++.+...+.++-..++.++....-++. .+.++-..+.|+|.++
T Consensus 442 qkq~~le~v~~~~~~ln~~lerLq~~~N~~~~----v~~~~~~n~~~~~~~~ 489 (554)
T KOG4677|consen 442 QKQIGLERVVEILHKLNAPLERLQEYVNLVED----VDTKLNLNTKFKCHDV 489 (554)
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHhccccc----cceeeccCCCcccccc
Confidence 33344444555555666666666666663332 4455555666666655
No 342
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=52.02 E-value=1.3e+02 Score=35.37 Aligned_cols=46 Identities=22% Similarity=0.169 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 002544 698 IRESELEALSKVALLEARVEEREKEIESLLESNNEQRASTVKKLEDL 744 (910)
Q Consensus 698 ~~~~~~~~~~~~~elE~rl~e~eee~e~l~~r~~~qr~~~i~~Le~~ 744 (910)
+..++.+...+.++|..+++++...+|++ ++...+.+.++..|..+
T Consensus 91 Vs~EL~ele~krqel~seI~~~n~kiEel-k~~i~~~q~eL~~Lk~~ 136 (907)
T KOG2264|consen 91 VSLELTELEVKRQELNSEIEEINTKIEEL-KRLIPQKQLELSALKGE 136 (907)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHH-HHHHHHhHHHHHHHHhH
Confidence 33334444444455555555555555555 44333333333333333
No 343
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=51.89 E-value=1.9e+02 Score=26.31 Aligned_cols=42 Identities=26% Similarity=0.308 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 672 AVIERVQRQIESLERQKTDLTNEVNRIRESELEALSKVALLE 713 (910)
Q Consensus 672 ~~ie~~~~~ie~Le~e~~~Le~Ele~~~~~~~~~~~~~~elE 713 (910)
.-+..+...+..+...+..+..+++..+..+..+..+.+.++
T Consensus 52 ~~~~~l~~~i~~~~~~~~~~~~~~~~~r~~l~~a~~~~k~~e 93 (123)
T PF02050_consen 52 RYISALEQAIQQQQQELERLEQEVEQAREELQEARRERKKLE 93 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555555555555555555555555444333
No 344
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=51.70 E-value=4.3e+02 Score=30.46 Aligned_cols=11 Identities=36% Similarity=0.244 Sum_probs=5.3
Q ss_pred HHHHHHhcCch
Q 002544 874 LKQELTKHNFG 884 (910)
Q Consensus 874 ~~~~~~~~~~~ 884 (910)
||=-||-..||
T Consensus 426 LkFmLTnlK~~ 436 (447)
T KOG2751|consen 426 LKFMLTNLKWL 436 (447)
T ss_pred HHHHHhccHHH
Confidence 44445544444
No 345
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=51.68 E-value=5.5e+02 Score=31.65 Aligned_cols=356 Identities=15% Similarity=0.142 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 002544 390 DAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKN--EISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRST 467 (910)
Q Consensus 390 ~~i~el~~~lee~~~~~~~l~~~~~~Le~e~~~L~~qle~~k~--e~~~~kkk~Ee~~~e~~~~k~kl~~eleel~~~~e 467 (910)
.++..-+..+-+..+....+...-+.|+.+......-|.-+.+ .-.+--.+|.+.++++..--..-.-=.++...+++
T Consensus 300 ~~~~~~q~r~v~~srE~ael~~~E~~LE~D~Q~A~DhLnLV~~AlR~QEKI~RYQ~Dl~Elt~RLEEQ~~VVeeA~e~~~ 379 (1480)
T COG3096 300 QQLAAEQYRHVDMSRELAELNGAEGDLEADYQAASDHLNLVQTALRQQEKIERYQADLEELTIRLEEQNEVVEEANERQE 379 (1480)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccchhhhhHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 468 AAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATK 547 (910)
Q Consensus 468 e~e~~~~~le~~~~~~q~Elee~~~k~e~~~~~~k~~lek~~~~~e~~~~e~q~~~~~~~~E~~~~~~ele~ei~~~~~k 547 (910)
+.+++....+.....+.+++.|...-+|...-.+ ....++...+++...-...-.-. ....+++......+
T Consensus 380 e~e~r~e~~E~EvD~lksQLADYQQALD~QQTRA-lQYQQAi~ALekAk~Lc~l~dLt--------~~~~e~~~~~f~A~ 450 (1480)
T COG3096 380 ENEARAEAAELEVDELKSQLADYQQALDVQQTRA-IQYQQAIAALERAKELCHLPDLT--------ADSAEEWLETFQAK 450 (1480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHHHHHhcCccccc--------hhhHHHHHHHHHHh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 548 IEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKEL-SEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFE 626 (910)
Q Consensus 548 l~~~e~ei~~l~~~lee~~~ki~~le~e~~~L~~el~dL-~~~le~~~~~~~~lEk~~~~Le~e~~el~~~l~e~~~~~e 626 (910)
-+.....+-.+...+.-....-..++..-.-.-.-..++ .+.--.....+-.--...+.+-+....|+.++.+++.++.
T Consensus 451 ~e~~Te~lL~Le~kms~s~AA~sQF~~AyqLV~~iaGE~~RS~A~~~A~~llR~~p~q~~~aq~~~~lr~~l~eLEqr~~ 530 (1480)
T COG3096 451 EEEATEKLLSLEQKMSMAQAAHSQFEQAYQLVVAIAGELARSEAWDVARELLREGPDQRHLAEQVQPLRMRLSELEQRLR 530 (1480)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhCccchhhHHHHHHHHHHhChhhHHHHHhhhHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 002544 627 EVQERCKVAEKEAKKATELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEAL 706 (910)
Q Consensus 627 E~e~~l~~~e~e~~~~~~~~e~l~~e~~~~~~e~~e~~r~~~e~~~~ie~~~~~ie~Le~e~~~Le~Ele~~~~~~~~~~ 706 (910)
.-+....-+..=.++....++ .+.+.....+....+.++...++....+...+......|..-+......----.
T Consensus 531 qQqsa~~Ll~~f~kr~~~~l~-----ae~lE~~~~e~eal~E~ls~~~s~~~EqR~~lRq~~e~L~~~~~~~~~~AP~Wl 605 (1480)
T COG3096 531 QQQSAERLLADFCKRQGKNLD-----AEELEALHQELEALIESLSDSVSNAREQRMALRQEQEQLQSRIQSLMQRAPVWL 605 (1480)
T ss_pred HHHHHHHHHHHHHHHhcccCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 707 SKVALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERRSRAAANAMAER 761 (910)
Q Consensus 707 ~~~~elE~rl~e~eee~e~l~~r~~~qr~~~i~~Le~~le~e~~~~~ea~~r~e~ 761 (910)
..-..|+.--+.--+++++- +....--.++-..+..+-+++.++++-...++.
T Consensus 606 ~Aq~ALe~L~eQSGe~~~dS--q~V~~~MQ~~L~~Ere~t~~rD~l~~~r~~ld~ 658 (1480)
T COG3096 606 AAQNALEQLSEQSGEEFTDS--QDVTEYMQQLLEREREATVERDELGARKNALDE 658 (1480)
T ss_pred HHHHHHHHHHHhhhhhhcch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 346
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=51.42 E-value=4.3e+02 Score=30.40 Aligned_cols=9 Identities=33% Similarity=0.435 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 002544 675 ERVQRQIES 683 (910)
Q Consensus 675 e~~~~~ie~ 683 (910)
+.++..|.+
T Consensus 308 Es~qtRisk 316 (395)
T PF10267_consen 308 ESCQTRISK 316 (395)
T ss_pred HHHHHHHHH
Confidence 333333333
No 347
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=51.41 E-value=3e+02 Score=28.57 Aligned_cols=55 Identities=18% Similarity=0.213 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 560 LELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYL 614 (910)
Q Consensus 560 ~~lee~~~ki~~le~e~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~e~~el 614 (910)
..++.+...+..++......+..+.++...+..+-......++++..|-+.+..+
T Consensus 32 s~Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~~ai~~Rs~sQrEvn~LLqRK~sW 86 (207)
T PF05546_consen 32 SEIEKLKKSIEELEDELEAARQEVREAKAAYDDAIQQRSSSQREVNELLQRKHSW 86 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 3455555555555555555566666666666666666666666666665555443
No 348
>cd07655 F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce
Probab=51.22 E-value=3.5e+02 Score=29.19 Aligned_cols=54 Identities=20% Similarity=0.336 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 002544 418 EKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEA 471 (910)
Q Consensus 418 ~e~~~L~~qle~~k~e~~~~kkk~Ee~~~e~~~~k~kl~~eleel~~~~ee~e~ 471 (910)
.+++-+...+......+...+..|...+..++........++...=..+.+.++
T Consensus 168 ~eleK~~~k~~k~~~~~~~~~~~Y~~~l~~~n~~~~~y~~~m~~~~~~~Q~lEe 221 (258)
T cd07655 168 DQVKKLQDKVEKCKQEVSKTKDKYEKALEDLNKYNPRYMEDMEQVFDKCQEFEE 221 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 334445555666666777777777777776666666666776666666666665
No 349
>cd07655 F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce
Probab=50.89 E-value=3.5e+02 Score=29.15 Aligned_cols=84 Identities=18% Similarity=0.231 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 411 GENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEW 490 (910)
Q Consensus 411 ~~~~~Le~e~~~L~~qle~~k~e~~~~kkk~Ee~~~e~~~~k~kl~~eleel~~~~ee~e~~~~~le~~~~~~q~Elee~ 490 (910)
++...++.....+.+.+...-..+...++.|+....+.+.+...+.. ......-....+..+...+.....+++..
T Consensus 112 ke~K~~e~~~~kaqk~~~~~~~~l~kaKk~Y~~~cke~e~a~~~~~~----~~~d~~~~~~eleK~~~k~~k~~~~~~~~ 187 (258)
T cd07655 112 KETKEAEDGFAKAQKPWAKLLKKVEKAKKAYHAACKAEKSAQKQENN----AKSDTSLSPDQVKKLQDKVEKCKQEVSKT 187 (258)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cccCccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666667777777778888888888766654333322221 11101111234666666666777777777
Q ss_pred HHHHHHHH
Q 002544 491 KRKYGVAV 498 (910)
Q Consensus 491 ~~k~e~~~ 498 (910)
+..|...+
T Consensus 188 ~~~Y~~~l 195 (258)
T cd07655 188 KDKYEKAL 195 (258)
T ss_pred HHHHHHHH
Confidence 77777754
No 350
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=50.74 E-value=5.2e+02 Score=31.13 Aligned_cols=8 Identities=25% Similarity=0.821 Sum_probs=3.8
Q ss_pred cccccccc
Q 002544 806 DDYEAGVG 813 (910)
Q Consensus 806 ~~~~~~~~ 813 (910)
|.||+|+|
T Consensus 460 DEVD~GIs 467 (557)
T COG0497 460 DEVDTGIS 467 (557)
T ss_pred ecccCCCC
Confidence 44444444
No 351
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=50.26 E-value=1.9e+02 Score=33.74 Aligned_cols=20 Identities=15% Similarity=0.298 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 002544 598 QSFEREARIMEQDKVYLEQK 617 (910)
Q Consensus 598 ~~lEk~~~~Le~e~~el~~~ 617 (910)
.++.++...|..++..++..
T Consensus 112 ~~~~~~~~ql~~~~~~~~~~ 131 (472)
T TIGR03752 112 QELTKEIEQLKSERQQLQGL 131 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444433
No 352
>PRK12704 phosphodiesterase; Provisional
Probab=49.27 E-value=5.4e+02 Score=30.88 Aligned_cols=7 Identities=29% Similarity=0.344 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 002544 769 AQAKLDE 775 (910)
Q Consensus 769 ~k~~i~~ 775 (910)
++.-|-.
T Consensus 190 a~~i~~~ 196 (520)
T PRK12704 190 AKEILAQ 196 (520)
T ss_pred HHHHHHH
Confidence 3333333
No 353
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=48.66 E-value=5.3e+02 Score=30.62 Aligned_cols=46 Identities=11% Similarity=0.135 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 401 DYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLT 446 (910)
Q Consensus 401 e~~~~~~~l~~~~~~Le~e~~~L~~qle~~k~e~~~~kkk~Ee~~~ 446 (910)
++++.++.+..++..--.+++++..+.+.+.........+||++..
T Consensus 585 e~qrH~~~l~~~k~~QlQ~l~~~~eer~~i~e~a~~La~R~eea~e 630 (741)
T KOG4460|consen 585 EIQRHVKLLCDQKKKQLQDLSYCREERKSLREMAERLADRYEEAKE 630 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555666665555555555555555554443
No 354
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=48.57 E-value=4.8e+02 Score=30.07 Aligned_cols=63 Identities=17% Similarity=0.224 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 711 LLEARVEEREKEIESLLESNNEQRASTVKKLEDLL-ESERRSRAAANAMAERLSLEVQSAQAKLDEMQ 777 (910)
Q Consensus 711 elE~rl~e~eee~e~l~~r~~~qr~~~i~~Le~~l-e~e~~~~~ea~~r~e~l~~ql~~~k~~i~~l~ 777 (910)
+---|.+.+++.+.++ ..+|+. +|..|.+.| .+|.+-=-...+|...+.--++..|..|..|+
T Consensus 255 EEr~R~erLEeqlNd~--~elHq~--Ei~~LKqeLa~~EEK~~Yqs~eRaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 255 EERYRYERLEEQLNDL--TELHQN--EIYNLKQELASMEEKMAYQSYERARDIWEVMESCQTRISKLE 318 (395)
T ss_pred HhHHHHHHHHHHHHHH--HHHHHH--HHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3333455667788888 777777 788888887 44444444566666666666777777777776
No 355
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=48.52 E-value=4.8e+02 Score=30.03 Aligned_cols=27 Identities=26% Similarity=0.304 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 002544 715 RVEEREKEIESLLESNNEQRASTVKKLE 742 (910)
Q Consensus 715 rl~e~eee~e~l~~r~~~qr~~~i~~Le 742 (910)
|..+++.++..+ +..+..++++=++|.
T Consensus 404 Re~eleqevkrL-rq~nr~l~eqneeln 430 (502)
T KOG0982|consen 404 REIELEQEVKRL-RQPNRILSEQNEELN 430 (502)
T ss_pred HHHHHHHHHHHh-ccccchhhhhhhhhh
Confidence 344444444444 444443333333333
No 356
>PF15456 Uds1: Up-regulated During Septation
Probab=48.33 E-value=2.5e+02 Score=26.76 Aligned_cols=7 Identities=14% Similarity=0.268 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 002544 543 EKATKIE 549 (910)
Q Consensus 543 ~~~~kl~ 549 (910)
.++.++.
T Consensus 26 ~LKkEl~ 32 (124)
T PF15456_consen 26 ELKKELR 32 (124)
T ss_pred HHHHHHH
Confidence 3333333
No 357
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=47.95 E-value=2.1e+02 Score=33.48 Aligned_cols=23 Identities=35% Similarity=0.463 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 002544 759 AERLSLEVQSAQAKLDEMQQELT 781 (910)
Q Consensus 759 ~e~l~~ql~~~k~~i~~l~~e~~ 781 (910)
.+.++.++..++..|..++..+.
T Consensus 118 ~~ql~~~~~~~~~~l~~l~~~l~ 140 (472)
T TIGR03752 118 IEQLKSERQQLQGLIDQLQRRLA 140 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444445556666666665554
No 358
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=47.15 E-value=3.5e+02 Score=28.15 Aligned_cols=52 Identities=17% Similarity=0.249 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 561 ELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKV 612 (910)
Q Consensus 561 ~lee~~~ki~~le~e~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~e~~ 612 (910)
....+.+.+.++.+++..|..++..+......+......|++....|..+..
T Consensus 150 A~~~l~e~~~~i~~EN~~L~k~L~~l~~e~~~L~~~~~~Le~qk~~L~~eq~ 201 (206)
T PF14988_consen 150 AKKSLDEFTRSIKRENQQLRKELLQLIQEAQKLEARKSQLEKQKQQLQQEQW 201 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666778888888888888888888777777777777777776665543
No 359
>PLN02939 transferase, transferring glycosyl groups
Probab=46.93 E-value=7.6e+02 Score=31.94 Aligned_cols=8 Identities=25% Similarity=1.041 Sum_probs=4.3
Q ss_pred ccchhHhh
Q 002544 863 QEDYTKFT 870 (910)
Q Consensus 863 ~~~~~~~~ 870 (910)
++|+.+|+
T Consensus 587 ~Dn~~RF~ 594 (977)
T PLN02939 587 HDDFKRFS 594 (977)
T ss_pred ccHHHHHH
Confidence 45555654
No 360
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=46.16 E-value=5.1e+02 Score=29.74 Aligned_cols=17 Identities=12% Similarity=0.270 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 002544 389 DDAINDKKKLADDYTSR 405 (910)
Q Consensus 389 e~~i~el~~~lee~~~~ 405 (910)
+..+.++++.++..+..
T Consensus 258 Eqsl~dlQk~Lekar~e 274 (575)
T KOG4403|consen 258 EQSLEDLQKRLEKAREE 274 (575)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 44444444444444333
No 361
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=45.87 E-value=8.3e+02 Score=32.08 Aligned_cols=11 Identities=0% Similarity=0.042 Sum_probs=5.3
Q ss_pred cCCCcchHHHH
Q 002544 293 HSSDASIDNVV 303 (910)
Q Consensus 293 ~~~~~~~~~~~ 303 (910)
+.|-|.|..|+
T Consensus 148 ~l~Qg~~~~fl 158 (1042)
T TIGR00618 148 LLPQGEFAQFL 158 (1042)
T ss_pred eecccchHHHH
Confidence 33445555554
No 362
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=45.59 E-value=4.6e+02 Score=29.02 Aligned_cols=37 Identities=16% Similarity=0.175 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 388 YDDAINDKKKLADDYTSRINNLQGENISLREKSSSLS 424 (910)
Q Consensus 388 le~~i~el~~~lee~~~~~~~l~~~~~~Le~e~~~L~ 424 (910)
+...+.++...+.+..+.+.++..++..+...+..+.
T Consensus 72 l~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y~ 108 (301)
T PF06120_consen 72 LRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKNYQ 108 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444445555555555555555555555444443
No 363
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=45.01 E-value=3.1e+02 Score=26.90 Aligned_cols=91 Identities=21% Similarity=0.252 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH--------------------------------------------
Q 002544 350 GSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYL-------------------------------------------- 385 (910)
Q Consensus 350 eke~~~L~~e~~~le~e~e~l~k~lee~e~~~~e~~-------------------------------------------- 385 (910)
..+...|-.++.-++++++.+..++..+....+++.
T Consensus 5 ~~~le~l~a~lq~l~~qie~L~~~i~~l~~~~~e~~~~~~tl~~lk~~~~g~E~LVpvGag~fv~~kv~~~~kviV~iGs 84 (145)
T COG1730 5 QQELEELAAQLQILQSQIESLQAQIAALNAAISELQTAIETLENLKGAGEGKEVLVPVGAGLFVKAKVKDMDKVIVSIGS 84 (145)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCceEEEEeccCceEEEEcCC
Q ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 386 -----KRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRK 440 (910)
Q Consensus 386 -----k~le~~i~el~~~lee~~~~~~~l~~~~~~Le~e~~~L~~qle~~k~e~~~~kkk 440 (910)
+.+++.+.-++++++++.+.+..++..+..|..+...+..++....++......+
T Consensus 85 g~~ae~~~~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~q~~~~~~~~ 144 (145)
T COG1730 85 GYYAEKSADEAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQQKQAAAQKK 144 (145)
T ss_pred ceeeeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
No 364
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=44.77 E-value=1.4e+02 Score=30.46 Aligned_cols=10 Identities=30% Similarity=0.036 Sum_probs=5.1
Q ss_pred hhhhHHHHHH
Q 002544 333 SSEGPILDLV 342 (910)
Q Consensus 333 ~~~~~il~~~ 342 (910)
.+.|.++.+.
T Consensus 105 YIsGf~LfL~ 114 (192)
T PF05529_consen 105 YISGFALFLS 114 (192)
T ss_pred HHHHHHHHHH
Confidence 3556555444
No 365
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=44.60 E-value=5.9e+02 Score=29.97 Aligned_cols=38 Identities=11% Similarity=-0.017 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 551 AEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSE 588 (910)
Q Consensus 551 ~e~ei~~l~~~lee~~~ki~~le~e~~~L~~el~dL~~ 588 (910)
...++.+|+..--..-.+|..+.+....|..+|-.+..
T Consensus 360 i~e~v~eLqk~~ad~~~KI~~~k~r~~~Ls~RiLRv~i 397 (508)
T KOG3091|consen 360 IGERVTELQKHHADAVAKIEEAKNRHVELSHRILRVMI 397 (508)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444433333444444444444444444443333
No 366
>smart00513 SAP Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation.
Probab=44.45 E-value=32 Score=24.77 Aligned_cols=34 Identities=26% Similarity=0.402 Sum_probs=26.5
Q ss_pred hhHhhHHHHHHHHHhcCchhhhhhccCCChHHHHHHHHHh
Q 002544 866 YTKFTVQKLKQELTKHNFGAELLQLRNPNKKEILALYEKC 905 (910)
Q Consensus 866 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 905 (910)
|.++||+.||.+|..+|... +.+|.|++.-...+
T Consensus 1 ~~~l~~~~Lk~~l~~~gl~~------~G~K~~Lv~Rl~~~ 34 (35)
T smart00513 1 LAKLKVSELKDELKKRGLST------SGTKAELVDRLLEA 34 (35)
T ss_pred CCcCcHHHHHHHHHHcCCCC------CCCHHHHHHHHHHh
Confidence 56899999999999988542 66788887765544
No 367
>COG5283 Phage-related tail protein [Function unknown]
Probab=44.39 E-value=8.7e+02 Score=31.88 Aligned_cols=111 Identities=10% Similarity=0.083 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 558 LRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEK 637 (910)
Q Consensus 558 l~~~lee~~~ki~~le~e~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~e~~el~~~l~e~~~~~eE~e~~l~~~e~ 637 (910)
|.+.+.....-...++...+.-..-+.+-...++.+...+....+-...+.++..++-......+..+.++..+.-.++.
T Consensus 27 L~ssi~~~~~~~k~~e~q~k~t~~~ls~s~~k~~~l~eameK~k~~~~~~kqe~~evn~at~a~~kay~e~~~q~tqae~ 106 (1213)
T COG5283 27 LKSSIKDSTQFWKMLEKQQKLTKDGLSASKGKYEGLSEAMEKQKKAYEDLKQEVKEVNRATQASKKAYQEYNAQYTQAEN 106 (1213)
T ss_pred HHHHHHhHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444554444444445555555555555555566666666666666666655566666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 002544 638 EAKKATELADRERAEAAAARKGKSEFENLAM 668 (910)
Q Consensus 638 e~~~~~~~~e~l~~e~~~~~~e~~e~~r~~~ 668 (910)
-+..+...+......+...++++..++..+.
T Consensus 107 ~~~sas~q~~~a~~q~~~~~~~iq~~~~~is 137 (1213)
T COG5283 107 KLRSLSGQFGVASEQLMLQQKEIQRLQYAIS 137 (1213)
T ss_pred HHHHHHhhhchhhHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555555554444433
No 368
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=44.15 E-value=3.6e+02 Score=30.47 Aligned_cols=63 Identities=21% Similarity=0.244 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 349 IGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSE----YLKRYDDAINDKKKLADDYTSRINNLQG 411 (910)
Q Consensus 349 ~eke~~~L~~e~~~le~e~e~l~k~lee~e~~~~e----~~k~le~~i~el~~~lee~~~~~~~l~~ 411 (910)
.......|..+.+.+..+...+.++++..-..+.+ +..++-.-+++.+.+|.++++.+..+..
T Consensus 142 l~~~~~~L~~enerL~~e~~~~~~qlE~~v~~K~~~E~~L~~KF~~vLNeKK~KIR~lq~~L~~~~~ 208 (342)
T PF06632_consen 142 LQAENEHLQKENERLESEANKLLKQLEKFVNAKEEHEEDLYAKFVLVLNEKKAKIRELQRLLASAKE 208 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhc
Confidence 33344445555555555555555555554333211 3455666666666666666665555443
No 369
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=44.04 E-value=2.3e+02 Score=26.06 Aligned_cols=26 Identities=27% Similarity=0.408 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 574 VEISSQKLETKELSEKLEAVNAKAQS 599 (910)
Q Consensus 574 ~e~~~L~~el~dL~~~le~~~~~~~~ 599 (910)
.+...|+..+.++..++......+..
T Consensus 65 ~dv~~L~l~l~el~G~~~~l~~~l~~ 90 (106)
T PF10805_consen 65 DDVHDLQLELAELRGELKELSARLQG 90 (106)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 33333333333333333333333333
No 370
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=43.25 E-value=8.4e+02 Score=31.37 Aligned_cols=42 Identities=10% Similarity=0.120 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 387 RYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVD 428 (910)
Q Consensus 387 ~le~~i~el~~~lee~~~~~~~l~~~~~~Le~e~~~L~~qle 428 (910)
..++.+..+...++.+.+.-...+.........+.+++..|.
T Consensus 315 ~~~~~v~~~~~~le~lk~~~~~rq~~i~~~~k~i~~~q~el~ 356 (1072)
T KOG0979|consen 315 EIEDEVEEKKNKLESLKKAAEKRQKRIEKAKKMILDAQAELQ 356 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 344444444445555555544444444444444444444443
No 371
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=43.05 E-value=6e+02 Score=32.17 Aligned_cols=19 Identities=16% Similarity=0.034 Sum_probs=11.1
Q ss_pred CccchhHhhHHHHHHHHHh
Q 002544 862 NQEDYTKFTVQKLKQELTK 880 (910)
Q Consensus 862 ~~~~~~~~~~~~~~~~~~~ 880 (910)
..=|-+-+|+..-..+|.+
T Consensus 694 ~~ldl~G~~~~eA~~~l~~ 712 (771)
T TIGR01069 694 LTLDLRGQRSEEALDRLEK 712 (771)
T ss_pred ceEECCCCCHHHHHHHHHH
Confidence 3445566676666666554
No 372
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=43.00 E-value=3.8e+02 Score=27.30 Aligned_cols=69 Identities=16% Similarity=0.297 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 002544 420 SSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVE 488 (910)
Q Consensus 420 ~~~L~~qle~~k~e~~~~kkk~Ee~~~e~~~~k~kl~~eleel~~~~ee~e~~~~~le~~~~~~q~Ele 488 (910)
.+.+...+..+..++..+..+....+.++..-+.++......++.....+...+..-...+..++.+++
T Consensus 105 ~~~~~~~i~~L~~~i~~~q~~~~~~i~~L~~f~~~l~~D~~~l~~~~~~l~~~l~~~~g~I~~L~~~I~ 173 (184)
T PF05791_consen 105 KEDLKEIIEDLQDQIQKNQDKVQALINELNDFKDKLQKDSRNLKTDVDELQSILAGENGDIPQLQKQIE 173 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcccCCHHHHHHHHH
Confidence 333444444444455555555555555555555556666666666666555555555455555555555
No 373
>PRK12704 phosphodiesterase; Provisional
Probab=42.52 E-value=6.8e+02 Score=30.07 Aligned_cols=6 Identities=0% Similarity=0.468 Sum_probs=2.6
Q ss_pred ccccCc
Q 002544 815 VQEMDT 820 (910)
Q Consensus 815 ~~~~~~ 820 (910)
++|++-
T Consensus 367 LHDIGK 372 (520)
T PRK12704 367 LHDIGK 372 (520)
T ss_pred HHccCc
Confidence 444443
No 374
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=42.19 E-value=2.8e+02 Score=25.49 Aligned_cols=7 Identities=14% Similarity=0.117 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 002544 739 KKLEDLL 745 (910)
Q Consensus 739 ~~Le~~l 745 (910)
..++..+
T Consensus 82 ~~l~~~l 88 (127)
T smart00502 82 ESLTQKQ 88 (127)
T ss_pred HHHHHHH
Confidence 3333333
No 375
>KOG2629 consensus Peroxisomal membrane anchor protein (peroxin) [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=41.96 E-value=3e+02 Score=29.99 Aligned_cols=28 Identities=7% Similarity=0.223 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 002544 350 GSERSSLMLKYRSIEDNMKLLKKQLEDS 377 (910)
Q Consensus 350 eke~~~L~~e~~~le~e~e~l~k~lee~ 377 (910)
+.++..|..+..++..-+..+...+...
T Consensus 121 e~~k~~Ld~~~~~~~~~~~~l~~~va~v 148 (300)
T KOG2629|consen 121 EADKRQLDDQFDKAAKSLNALMDEVAQV 148 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444443333
No 376
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=41.82 E-value=3.4e+02 Score=26.34 Aligned_cols=61 Identities=13% Similarity=0.140 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 554 CLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYL 614 (910)
Q Consensus 554 ei~~l~~~lee~~~ki~~le~e~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~e~~el 614 (910)
.+...+..+....+.|..+..........-..|.............-++.+..|..|.+.+
T Consensus 34 ~~~~~~~~l~~~~~qL~~l~~~a~~~~~~Q~~Lr~~~~~~~~~l~~re~~i~rL~~ENe~l 94 (135)
T TIGR03495 34 VLKAQQAELASKANQLIVLLALAKRNEEAQAQLRQQLAQARALLAQREQRIERLKRENEDL 94 (135)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH
Confidence 3334444444444444444444444444444444444555555555555555555544443
No 377
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=41.60 E-value=5.3e+02 Score=28.62 Aligned_cols=26 Identities=15% Similarity=0.324 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 591 EAVNAKAQSFEREARIMEQDKVYLEQ 616 (910)
Q Consensus 591 e~~~~~~~~lEk~~~~Le~e~~el~~ 616 (910)
+-++..+...++..+.+..+...|++
T Consensus 255 e~LRAel~ree~r~K~lKeEmeSLke 280 (561)
T KOG1103|consen 255 EFLRAELEREEKRQKMLKEEMESLKE 280 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444443
No 378
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=41.16 E-value=6.4e+02 Score=29.44 Aligned_cols=58 Identities=12% Similarity=0.148 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 561 ELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKY 618 (910)
Q Consensus 561 ~lee~~~ki~~le~e~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~e~~el~~~l 618 (910)
.......-|..|+.++..++.++..|...+..-.-.+..+..++..|+.++...+.++
T Consensus 280 ~a~~~~~lI~~Le~qLa~~~aeL~~L~~~~~p~sPqV~~l~~rI~aLe~QIa~er~kl 337 (434)
T PRK15178 280 TITAIYQLIAGFETQLAEAKAEYAQLMVNGLDQNPLIPRLSAKIKVLEKQIGEQRNRL 337 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHh
Confidence 3333444444444555555555444443333333455556666666666665555554
No 379
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=40.79 E-value=9.4e+02 Score=31.21 Aligned_cols=399 Identities=12% Similarity=0.110 Sum_probs=0.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 360 YRSIEDNMKLLKKQLEDSERYK-----SEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEI 434 (910)
Q Consensus 360 ~~~le~e~e~l~k~lee~e~~~-----~e~~k~le~~i~el~~~lee~~~~~~~l~~~~~~Le~e~~~L~~qle~~k~e~ 434 (910)
+..+-.+++.|+..+.++..+. .+.....+.+......+++++..++..+...+..+.+........-..++.+.
T Consensus 406 lKd~~~EIerLK~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~ 485 (1041)
T KOG0243|consen 406 LKDLYEEIERLKRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEK 485 (1041)
T ss_pred HHHHHHHHHHHHHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 435 SDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQER 514 (910)
Q Consensus 435 ~~~kkk~Ee~~~e~~~~k~kl~~eleel~~~~ee~e~~~~~le~~~~~~q~Elee~~~k~e~~~~~~k~~lek~~~~~e~ 514 (910)
...+.+++....+ -..+..++..++.++...+..++..+..-..+......++..++.+. ..-..|-...-...+
T Consensus 486 ~~~k~~L~~~~~e----l~~~~ee~~~~~~~l~~~e~ii~~~~~se~~l~~~a~~l~~~~~~s~-~d~s~l~~kld~~~~ 560 (1041)
T KOG0243|consen 486 EKLKSKLQNKNKE----LESLKEELQQAKATLKEEEEIISQQEKSEEKLVDRATKLRRSLEESQ-DDLSSLFEKLDRKDR 560 (1041)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhhc
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 515 TSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLR--------LELKAAESKMRSYEVEISSQKLETKEL 586 (910)
Q Consensus 515 ~~~e~q~~~~~~~~E~~~~~~ele~ei~~~~~kl~~~e~ei~~l~--------~~lee~~~ki~~le~e~~~L~~el~dL 586 (910)
..+.-+...+.|..++...+..+...+.................. ...+....++. ..+..+..-++.+
T Consensus 561 ~~d~n~~~~~~~~~~l~~~~~~~~~~v~~~~s~~~~~l~~~~~~~~s~~s~~~~~~e~~~t~~~---~~r~~~~~~~e~~ 637 (1041)
T KOG0243|consen 561 LDDDNQEVIDDFQSQLSENLSTLHGLVASSSSQQISQLTTMLAQMESFLSAKSKATEIMKTKIS---KDRDILSEVLESL 637 (1041)
T ss_pred cccccHHHHHHHhhhhhHHHHHHHHHHhhhhhhHHHHHHHHHhhhHHHhhhhccchhhhhhhhh---hHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 002544 587 SEKLEAVNAKAQSFEREARI-MEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAARKGKSEFEN 665 (910)
Q Consensus 587 ~~~le~~~~~~~~lEk~~~~-Le~e~~el~~~l~e~~~~~eE~e~~l~~~e~e~~~~~~~~e~l~~e~~~~~~e~~e~~r 665 (910)
..........+..--..+.. ....+..+...+.........+-..++..-.....+...+.. .+...........+.
T Consensus 638 q~~~~~~k~~~~s~l~~i~s~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~l~~q~~~~~l~~~--qe~~~~~~~~~~~~~ 715 (1041)
T KOG0243|consen 638 QQLQEVLKKDSESCLEVINSSITSSINELESMLETIANTADDLLQNISSRLSNQQEILSLFAN--QELQELVLSQDSAQE 715 (1041)
T ss_pred HHHHHHHhhhHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhH--HHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 002544 666 LAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSK-VALLEARVEEREKEIESLLESNNEQRASTVKKLEDL 744 (910)
Q Consensus 666 ~~~e~~~~ie~~~~~ie~Le~e~~~Le~Ele~~~~~~~~~~~~-~~elE~rl~e~eee~e~l~~r~~~qr~~~i~~Le~~ 744 (910)
.-.....-...+..++..+.........-+..--..+...... ..+...-+++.-+-.-...++.+......+..+..-
T Consensus 716 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~e~~~~~~q~~~e~~~~~~~~~~~~ 795 (1041)
T KOG0243|consen 716 LSELTSTFFQTLDNQAEKLTNLFSEANISLSQKLSSFQKKFESIAEDEKQLVEDIKELLSSHDQRNNELLDIALQTLRSA 795 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHHHHhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 745 LESERRSRAAANAMAERLSLEVQS 768 (910)
Q Consensus 745 le~e~~~~~ea~~r~e~l~~ql~~ 768 (910)
+......+.+.......+..-++.
T Consensus 796 ~~~~~~~~~e~~~~~~~l~~~~k~ 819 (1041)
T KOG0243|consen 796 VNSRESNLTESVSVMQNLSDDLKT 819 (1041)
T ss_pred hccchhHHHHhhHHHhhhhHHHHH
No 380
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=40.74 E-value=2e+02 Score=23.41 Aligned_cols=20 Identities=10% Similarity=0.292 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 002544 562 LKAAESKMRSYEVEISSQKL 581 (910)
Q Consensus 562 lee~~~ki~~le~e~~~L~~ 581 (910)
+..+..++..+..++..++.
T Consensus 12 Vq~L~~kvdqLs~dv~~lr~ 31 (56)
T PF04728_consen 12 VQTLNSKVDQLSSDVNALRA 31 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 381
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=40.66 E-value=5.1e+02 Score=28.11 Aligned_cols=6 Identities=0% Similarity=-0.019 Sum_probs=2.1
Q ss_pred HHHHHH
Q 002544 611 KVYLEQ 616 (910)
Q Consensus 611 ~~el~~ 616 (910)
+.++++
T Consensus 223 ~~e~~~ 228 (269)
T PF05278_consen 223 VKEIKE 228 (269)
T ss_pred HHHHHH
Confidence 333333
No 382
>PLN03188 kinesin-12 family protein; Provisional
Probab=40.01 E-value=1e+03 Score=31.52 Aligned_cols=12 Identities=17% Similarity=0.080 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHH
Q 002544 485 EEVEEWKRKYGV 496 (910)
Q Consensus 485 ~Elee~~~k~e~ 496 (910)
..+.|+..||-.
T Consensus 1114 e~ya~l~ek~~~ 1125 (1320)
T PLN03188 1114 EQYADLEEKHIQ 1125 (1320)
T ss_pred HHHHHHHHHHHH
Confidence 334444444433
No 383
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=39.52 E-value=4.2e+02 Score=26.77 Aligned_cols=131 Identities=13% Similarity=0.222 Sum_probs=0.0
Q ss_pred HHHHHHhhhccCCCChHHHHHHHHhHhhhhHHHHHHHHHHHHHHHHH---------HHHHHHHHhHHH-HHHHHHHHHHH
Q 002544 307 DGLISEYETSCHGPGKWQKLATFLQQSSEGPILDLVKRLIDQIGSER---------SSLMLKYRSIED-NMKLLKKQLED 376 (910)
Q Consensus 307 ~~~~~~Y~~~~~gp~k~~~l~~fl~~~~~~~il~~~~rl~~~~eke~---------~~L~~e~~~le~-e~e~l~k~lee 376 (910)
..|+.......--|.-...+..-+...+...+-.....+..+.+-+. ..|+.++..++. +...+....+.
T Consensus 5 ~~~v~~Le~~Gft~~QAe~i~~~l~~~l~~~~~~~~~~~vtk~d~e~~~~~~~a~~~eLr~el~~~~k~~~~~lr~~~e~ 84 (177)
T PF07798_consen 5 HKFVKRLEAAGFTEEQAEAIMKALREVLNDSLEKVAQDLVTKSDLENQEYLFKAAIAELRSELQNSRKSEFAELRSENEK 84 (177)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 377 SERYKSEYLKRYDDAINDKKK------------LADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDW 437 (910)
Q Consensus 377 ~e~~~~e~~k~le~~i~el~~------------~lee~~~~~~~l~~~~~~Le~e~~~L~~qle~~k~e~~~~ 437 (910)
+.........++.+.+..++. --++....-..+..--..+..++..|..++++++.+.-+|
T Consensus 85 L~~eie~l~~~L~~ei~~l~a~~klD~n~eK~~~r~e~~~~~~ki~e~~~ki~~ei~~lr~~iE~~K~~~lr~ 157 (177)
T PF07798_consen 85 LQREIEKLRQELREEINKLRAEVKLDLNLEKGRIREEQAKQELKIQELNNKIDTEIANLRTEIESLKWDTLRW 157 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 384
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=39.08 E-value=6.2e+02 Score=28.62 Aligned_cols=74 Identities=16% Similarity=0.263 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 002544 670 RMAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSKVALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESER 749 (910)
Q Consensus 670 ~~~~ie~~~~~ie~Le~e~~~Le~Ele~~~~~~~~~~~~~~elE~rl~e~eee~e~l~~r~~~qr~~~i~~Le~~le~e~ 749 (910)
....+.++...+..|.+++.+|..+..++..+++..+....++|..+..+ |-.+ +...+..|++|+..|....
T Consensus 135 ~l~~~~~l~~~~~~L~~enerL~~e~~~~~~qlE~~v~~K~~~E~~L~~K---F~~v----LNeKK~KIR~lq~~L~~~~ 207 (342)
T PF06632_consen 135 CLDANSRLQAENEHLQKENERLESEANKLLKQLEKFVNAKEEHEEDLYAK---FVLV----LNEKKAKIRELQRLLASAK 207 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH----HHhHHHHHHHHHHHHHHhh
Confidence 34445556666667777777788888877777766666666666555432 2222 4455667788887776555
Q ss_pred H
Q 002544 750 R 750 (910)
Q Consensus 750 ~ 750 (910)
.
T Consensus 208 ~ 208 (342)
T PF06632_consen 208 E 208 (342)
T ss_dssp H
T ss_pred c
Confidence 4
No 385
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=38.83 E-value=4.1e+02 Score=26.48 Aligned_cols=100 Identities=12% Similarity=0.093 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 490 WKRKYGVAVREAKAALEKAAIV-QERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESK 568 (910)
Q Consensus 490 ~~~k~e~~~~~~k~~lek~~~~-~e~~~~e~q~~~~~~~~E~~~~~~ele~ei~~~~~kl~~~e~ei~~l~~~lee~~~k 568 (910)
+|.+|..++..+|..-...... ..-.++..-.=+.. +.........+..+...+..++..|+..++.++.+
T Consensus 55 VRkqY~~~i~~AKkqRk~~~~~~~~ltl~~vI~fLq~--------l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e 126 (161)
T TIGR02894 55 VRKQYEEAIELAKKQRKELKREAGSLTLQDVISFLQN--------LKTTNPSDQALQKENERLKNQNESLQKRNEELEKE 126 (161)
T ss_pred HHHHHHHHHHHHHHHHhccccCcccCCHHHHHHHHHH--------HHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 569 MRSYEVEISSQKLETKELSEKLEAVNAKA 597 (910)
Q Consensus 569 i~~le~e~~~L~~el~dL~~~le~~~~~~ 597 (910)
+..+......++..-..|..-++.++..+
T Consensus 127 ~~~L~~~~~~~~eDY~~L~~Im~RARkl~ 155 (161)
T TIGR02894 127 LEKLRQRLSTIEEDYQTLIDIMDRARKLA 155 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 386
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=38.55 E-value=3.2e+02 Score=25.10 Aligned_cols=34 Identities=12% Similarity=0.122 Sum_probs=15.7
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 002544 455 VCSEIEVLKSRSTAAEARLAAAREQALSAQEEVE 488 (910)
Q Consensus 455 l~~eleel~~~~ee~e~~~~~le~~~~~~q~Ele 488 (910)
+...+..+.......+..+..+......++..++
T Consensus 5 L~~~l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~ 38 (127)
T smart00502 5 LEELLTKLRKKAAELEDALKQLISIIQEVEENAA 38 (127)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444555555555544444444444433333
No 387
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=38.51 E-value=2.2e+02 Score=27.64 Aligned_cols=87 Identities=18% Similarity=0.162 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhhh
Q 002544 710 ALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKLDEMQQELTKARLNETA 789 (910)
Q Consensus 710 ~elE~rl~e~eee~e~l~~r~~~qr~~~i~~Le~~le~e~~~~~ea~~r~e~l~~ql~~~k~~i~~l~~e~~~~~~~~~~ 789 (910)
.+|-.|+.-..+.+... ..+.+.+.+.+..|+.-...-...+.++.++.-.++-.+=.+-..++-+...-.++.-.|..
T Consensus 33 ~dL~~R~~~Q~~~~~~~-~~~l~~i~~~l~~L~~~~~~~~~rl~~~r~r~~~L~hR~l~v~~~~eilr~~g~~l~~eEe~ 111 (141)
T PF13874_consen 33 EDLKKRVEAQEEEIAQH-RERLKEINDKLEELQKHDLETSARLEEARRRHQELSHRLLRVLRKQEILRNRGYALSPEEEE 111 (141)
T ss_dssp -------------HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 34555555555555555 55566666666666544444555556666666666666666666777666666677778888
Q ss_pred hcchhhhh
Q 002544 790 LGSKLRAV 797 (910)
Q Consensus 790 ~~~~~~~~ 797 (910)
|.++|.+.
T Consensus 112 L~~~le~l 119 (141)
T PF13874_consen 112 LRKRLEAL 119 (141)
T ss_dssp --------
T ss_pred HHHHHHHH
Confidence 88888774
No 388
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=38.23 E-value=7.7e+02 Score=29.53 Aligned_cols=8 Identities=25% Similarity=0.198 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 002544 769 AQAKLDEM 776 (910)
Q Consensus 769 ~k~~i~~l 776 (910)
++.-|-..
T Consensus 184 a~~i~~~a 191 (514)
T TIGR03319 184 AKEILATA 191 (514)
T ss_pred HHHHHHHH
Confidence 33333333
No 389
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.06 E-value=5e+02 Score=27.28 Aligned_cols=83 Identities=14% Similarity=0.152 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 503 AALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLE 582 (910)
Q Consensus 503 ~~lek~~~~~e~~~~e~q~~~~~~~~E~~~~~~ele~ei~~~~~kl~~~e~ei~~l~~~lee~~~ki~~le~e~~~L~~e 582 (910)
+.+......+++.+...-.+.-....++..++.....+...+...+.+.+.++.....-+.+-.+..-.++.+++.++.+
T Consensus 22 ~~i~n~~s~~D~f~q~~r~~~~nS~~efar~lS~~~~e~e~l~~~l~etene~~~~neL~~ek~~~q~~ieqeik~~q~e 101 (246)
T KOG4657|consen 22 KDIHNQRSKIDSFIQSPRRRSMNSLVEFARALSQSQVELENLKADLRETENELVKVNELKTEKEARQMGIEQEIKATQSE 101 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444222223334444555555555555555555544444444444444444444444444444443
Q ss_pred HHH
Q 002544 583 TKE 585 (910)
Q Consensus 583 l~d 585 (910)
++-
T Consensus 102 lEv 104 (246)
T KOG4657|consen 102 LEV 104 (246)
T ss_pred HHH
Confidence 333
No 390
>PF12004 DUF3498: Domain of unknown function (DUF3498); InterPro: IPR021887 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with PF00616 from PFAM, PF00168 from PFAM. This domain has two conserved sequence motifs: DLQ and PLSFQNP. ; PDB: 3BXJ_B.
Probab=37.80 E-value=11 Score=44.26 Aligned_cols=61 Identities=23% Similarity=0.306 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 361 RSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSS 421 (910)
Q Consensus 361 ~~le~e~e~l~k~lee~e~~~~e~~k~le~~i~el~~~lee~~~~~~~l~~~~~~Le~e~~ 421 (910)
+.-+.||..|++.|..+.+++++|.+++..+-.+.++.+-+++..+.+-+..++..+.+.+
T Consensus 372 e~YEqEI~~LkErL~~S~rkLeEyErrLl~QEqqt~Kll~qyq~RLedSE~RLr~QQ~eKd 432 (495)
T PF12004_consen 372 EKYEQEIQSLKERLRMSHRKLEEYERRLLSQEQQTQKLLLQYQARLEDSEERLRRQQEEKD 432 (495)
T ss_dssp -------------------------------------------------------------
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHhhhhH
Confidence 3456677777777777777777777777777667777777777777777666666555443
No 391
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=37.15 E-value=1.8e+02 Score=27.49 Aligned_cols=38 Identities=16% Similarity=0.131 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 002544 448 QKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQE 485 (910)
Q Consensus 448 ~~~~k~kl~~eleel~~~~ee~e~~~~~le~~~~~~q~ 485 (910)
.+++++-+...++.+...++.....+..+.++...+..
T Consensus 84 ~~eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i~~ 121 (126)
T TIGR00293 84 AEEAIEFLKKRIEELEKAIEKLQEALAELASRAQQLEQ 121 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555444444333
No 392
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=36.60 E-value=56 Score=29.86 Aligned_cols=29 Identities=21% Similarity=0.239 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 590 LEAVNAKAQSFEREARIMEQDKVYLEQKY 618 (910)
Q Consensus 590 le~~~~~~~~lEk~~~~Le~e~~el~~~l 618 (910)
+.........++.....++.++.+|...+
T Consensus 3 l~~e~~~r~~ae~~~~~ie~ElEeLTasL 31 (100)
T PF06428_consen 3 LEEERERREEAEQEKEQIESELEELTASL 31 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666666666666666666654
No 393
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=36.37 E-value=7.4e+02 Score=28.73 Aligned_cols=19 Identities=32% Similarity=0.389 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHhhhhchh
Q 002544 769 AQAKLDEMQQELTKARLNE 787 (910)
Q Consensus 769 ~k~~i~~l~~e~~~~~~~~ 787 (910)
.+..+..+..++..++..|
T Consensus 365 ~~~i~~~~~eeL~~l~eeE 383 (412)
T PF04108_consen 365 MKKIIREANEELDKLREEE 383 (412)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444333
No 394
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=36.19 E-value=22 Score=33.79 Aligned_cols=51 Identities=18% Similarity=0.293 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 385 LKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEIS 435 (910)
Q Consensus 385 ~k~le~~i~el~~~lee~~~~~~~l~~~~~~Le~e~~~L~~qle~~k~e~~ 435 (910)
+..+...+..+..++..+...+..|...+..+......|...|..++....
T Consensus 27 l~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l~~aq~~a~ 77 (131)
T PF05103_consen 27 LDELAEELERLQRENAELKEEIEELQAQLEELREEEESLQRALIQAQETAD 77 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCCT-----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhhhhhhHH
Confidence 333444444444444444444444444444454444444444444433333
No 395
>KOG4074 consensus Leucine zipper nuclear factor [Function unknown]
Probab=35.79 E-value=6.2e+02 Score=27.70 Aligned_cols=81 Identities=17% Similarity=0.221 Sum_probs=61.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 362 SIEDNMKLLKKQLEDSERYKSEYLKRYDDAIN-DKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRK 440 (910)
Q Consensus 362 ~le~e~e~l~k~lee~e~~~~e~~k~le~~i~-el~~~lee~~~~~~~l~~~~~~Le~e~~~L~~qle~~k~e~~~~kkk 440 (910)
.++.+.+.+++++.-....++++.+-+-..+. +|+.+++-+...+.+|....-.+-...-...+|++.+..+.+-|+.|
T Consensus 141 ~l~~e~~~l~~ql~iqt~vNsELK~LlVASvgddLQ~~ve~LtedK~qLa~~~~~~~~nl~~~~Eq~erl~iqcdVWrsK 220 (383)
T KOG4074|consen 141 ELERELDLLRKQLNIQTKVNSELKRLLVASVGDDLQGQVEALTEDKVQLAHRVDEYMGNLMVEDEQSERLRIQCDVWRSK 220 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhhHHHHHHHH
Confidence 56778888888888877777776665555554 56677777777777777777776666667788899999999999999
Q ss_pred HH
Q 002544 441 YD 442 (910)
Q Consensus 441 ~E 442 (910)
+=
T Consensus 221 FL 222 (383)
T KOG4074|consen 221 FL 222 (383)
T ss_pred HH
Confidence 84
No 396
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=35.74 E-value=1.9e+02 Score=23.39 Aligned_cols=41 Identities=10% Similarity=0.372 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 401 DYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKY 441 (910)
Q Consensus 401 e~~~~~~~l~~~~~~Le~e~~~L~~qle~~k~e~~~~kkk~ 441 (910)
++...+..+......++.+.+++...++.++..+.+.-.=|
T Consensus 4 elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ll~lY 44 (55)
T PF05377_consen 4 ELENELPRIESSINTVKKENEEISESVEKIEENVKDLLSLY 44 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444555555555555554444444433333
No 397
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=35.57 E-value=5.3e+02 Score=30.82 Aligned_cols=101 Identities=17% Similarity=0.292 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHhhccCCCcchHH-HHHHHHHHHHHhhhccCCCChHHHHHHHHhHhhhhHHHHHHHHHHHHHHHHH
Q 002544 275 IRCSSAIQSMERKLRAACHSSDASIDN-VVKVLDGLISEYETSCHGPGKWQKLATFLQQSSEGPILDLVKRLIDQIGSER 353 (910)
Q Consensus 275 ~~C~~~l~~l~~~l~~~~~~~~~~~~~-~~~~~~~~~~~Y~~~~~gp~k~~~l~~fl~~~~~~~il~~~~rl~~~~eke~ 353 (910)
.+|..++.-|... ......-.|.|.. -+++|+.++..|++. . -|| -+.+..+..-+.-++
T Consensus 66 ~~c~~i~~iL~~t-e~~skn~fG~yss~rmk~W~~Iv~~yeK~---n-------~~L--------~E~a~~L~r~v~YeI 126 (507)
T PF05600_consen 66 FHCKRIVEILKQT-EADSKNIFGRYSSQRMKDWQEIVKLYEKD---N-------LYL--------AEAAQILVRNVNYEI 126 (507)
T ss_pred HHHHHHHHHHhCC-CccccceeccccchhHHHHHHHHHHHHhc---c-------chH--------HHHHHHHHHHhcccc
Confidence 3477766555432 1111111233332 377888888888842 1 011 122222333344455
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 354 SSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAIND 394 (910)
Q Consensus 354 ~~L~~e~~~le~e~e~l~k~lee~e~~~~e~~k~le~~i~e 394 (910)
=.++.++.+.++.+..+.+...+..+.......++.....+
T Consensus 127 P~lkKqi~k~~q~~~d~~kk~~e~~~~~~~~~~~~~~~c~~ 167 (507)
T PF05600_consen 127 PALKKQIAKCQQQLEDLDKKEEELQRSAAEARERYKKACKQ 167 (507)
T ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555444444333333334443333
No 398
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=35.44 E-value=3.8e+02 Score=25.09 Aligned_cols=108 Identities=13% Similarity=0.149 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 373 QLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAME 452 (910)
Q Consensus 373 ~lee~e~~~~e~~k~le~~i~el~~~lee~~~~~~~l~~~~~~Le~e~~~L~~qle~~k~e~~~~kkk~Ee~~~e~~~~k 452 (910)
++-+..+.+......+...-.+...........-..|...-..|.........-+...........++++..... +
T Consensus 1 ~li~kkre~~~~~~~l~~kr~e~~~~~~~~~~~e~~L~~~e~~l~~~~~~f~~flken~~k~~rA~k~a~~e~k~----~ 76 (126)
T PF13863_consen 1 ELIEKKREMFLVQLALDTKREEIERREEQLKQREEELEKKEQELEEDVIKFDKFLKENEAKRERAEKRAEEEKKK----K 76 (126)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH----H
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 002544 453 DQVCSEIEVLKSRSTAAEARLAAAREQALSAQ 484 (910)
Q Consensus 453 ~kl~~eleel~~~~ee~e~~~~~le~~~~~~q 484 (910)
.....++..|...++.+...+..++..+..+.
T Consensus 77 ~~k~~ei~~l~~~l~~l~~~~~k~e~~l~~~~ 108 (126)
T PF13863_consen 77 EEKEAEIKKLKAELEELKSEISKLEEKLEEYK 108 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 399
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=35.36 E-value=2.4e+02 Score=30.56 Aligned_cols=40 Identities=5% Similarity=0.060 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 574 VEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVY 613 (910)
Q Consensus 574 ~e~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~e~~e 613 (910)
..+..|+.++..|..+++...-.+..+.++.+.+-.+++.
T Consensus 61 ~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~ 100 (263)
T PRK10803 61 QQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDS 100 (263)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444444444444444444444444443
No 400
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.96 E-value=5.2e+02 Score=26.56 Aligned_cols=64 Identities=17% Similarity=0.235 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 557 TLRLELKAAESKMRSYEVEISSQKLETKELSE--KLEAVNAKAQSFEREARIMEQDKVYLEQKYKS 620 (910)
Q Consensus 557 ~l~~~lee~~~ki~~le~e~~~L~~el~dL~~--~le~~~~~~~~lEk~~~~Le~e~~el~~~l~e 620 (910)
.+..+-..++.+|..|..++..++.+|.-... ....++..+-..=++.+.++.++..|..+-..
T Consensus 23 ~v~~r~dSve~KIskLDaeL~k~~~Qi~k~R~gpaq~~~KqrAlrVLkQKK~yE~q~d~L~~QsfN 88 (218)
T KOG1655|consen 23 SVNKRSDSVEKKISKLDAELCKYKDQIKKTRPGPAQNALKQRALRVLKQKKMYENQKDSLDQQSFN 88 (218)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 33333444444444444444444444443322 22345566666677788888888888776433
No 401
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=34.95 E-value=3.4e+02 Score=26.92 Aligned_cols=16 Identities=25% Similarity=0.567 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 002544 557 TLRLELKAAESKMRSY 572 (910)
Q Consensus 557 ~l~~~lee~~~ki~~l 572 (910)
.++.+|......|..|
T Consensus 31 ~~k~ql~~~d~~i~~L 46 (155)
T PF06810_consen 31 NLKTQLKEADKQIKDL 46 (155)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 402
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=34.86 E-value=6.8e+02 Score=27.85 Aligned_cols=48 Identities=13% Similarity=0.248 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 569 MRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQ 616 (910)
Q Consensus 569 i~~le~e~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~e~~el~~ 616 (910)
|+.+..++..|+.+++..+..-.-+..+...|.+-++.++....++.-
T Consensus 247 i~EfdiEre~LRAel~ree~r~K~lKeEmeSLkeiVkdlEA~hQh~~p 294 (561)
T KOG1103|consen 247 IEEFDIEREFLRAELEREEKRQKMLKEEMESLKEIVKDLEADHQHLRP 294 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCc
Confidence 344445555555555555555555556666666677777777777765
No 403
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=34.75 E-value=4.3e+02 Score=26.19 Aligned_cols=24 Identities=21% Similarity=0.425 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 419 KSSSLSKTVDSLKNEISDWKRKYD 442 (910)
Q Consensus 419 e~~~L~~qle~~k~e~~~~kkk~E 442 (910)
..++|..+++.++....++...|+
T Consensus 52 d~eeLk~~i~~lq~~~~~~~~~~e 75 (155)
T PF06810_consen 52 DNEELKKQIEELQAKNKTAKEEYE 75 (155)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555544444444444444
No 404
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=34.24 E-value=3.6e+02 Score=28.40 Aligned_cols=54 Identities=20% Similarity=0.201 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 543 EKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAK 596 (910)
Q Consensus 543 ~~~~kl~~~e~ei~~l~~~lee~~~ki~~le~e~~~L~~el~dL~~~le~~~~~ 596 (910)
..+.++.+++..+.+|.++.+-+..++..|....+.|-.+-.++...++..+..
T Consensus 87 rKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~ 140 (292)
T KOG4005|consen 87 RKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQE 140 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 344455555555666666666666666666666655555555554444444433
No 405
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=34.03 E-value=7.7e+02 Score=28.26 Aligned_cols=229 Identities=18% Similarity=0.180 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH-------HHHHHHH----HHHHHHH
Q 002544 415 SLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAA-------EARLAAA----REQALSA 483 (910)
Q Consensus 415 ~Le~e~~~L~~qle~~k~e~~~~kkk~Ee~~~e~~~~k~kl~~eleel~~~~ee~-------e~~~~~l----e~~~~~~ 483 (910)
++..++..|..+++.++.+++..+......- +.......+..++..|+.+++.+ ......+ .....++
T Consensus 91 s~~~kl~RL~~Ev~EL~eEl~~~~~~~~~~~-~e~~~~~~l~~~~~~L~~~L~~l~l~~~lg~~~~~~~~~~~~~~~~kl 169 (388)
T PF04912_consen 91 SPEQKLQRLRREVEELKEELEKRKADSKESD-EEKISPEELAQQLEELSKQLDSLKLEELLGEETAQDLSDPQKALSKKL 169 (388)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhhcccccc-cccCChhhHHHHHHHHHHHHHHhhcccccchhhhcccccchhhHHHHH
Q ss_pred HHHHHHH-------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHH
Q 002544 484 QEEVEEW-------------------------KRKYGVAVREAKAALEKAAIVQERTSKE----------------MQQR 522 (910)
Q Consensus 484 q~Elee~-------------------------~~k~e~~~~~~k~~lek~~~~~e~~~~e----------------~q~~ 522 (910)
...++.. ..+.... ..-+.|++....+++.+.- +...
T Consensus 170 ~~~l~~~k~~~~~~~~~~~~~~ityel~~~p~~~~~~~l--a~~a~LE~RL~~LE~~lG~~~~~~~~l~~~~~~~~l~~~ 247 (388)
T PF04912_consen 170 LSQLESFKSSSGAGSSPANSDHITYELYYPPEQAKSQQL--ARAADLEKRLARLESALGIDSDKMSSLDSDTSSSPLLPA 247 (388)
T ss_pred HHhhhhcccccccCCCCCCCCceeeeeecCcccchhhHH--HHHHHHHHHHHHHHHHhCCCccccccccccCCcchHHHH
Q ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 523 EDVLREEFS----STLAEKEEEMKEKATKIEHA-------------EQCLTTLRLELKAAESKMRSYEVEISSQKLETKE 585 (910)
Q Consensus 523 ~~~~~~E~~----~~~~ele~ei~~~~~kl~~~-------------e~ei~~l~~~lee~~~ki~~le~e~~~L~~el~d 585 (910)
...+..-+. .++..++..+..+..++..+ +.+|.+|-..+.....-...+=.-+.+|+. |..
T Consensus 248 l~~L~~~lslL~~~~Ld~i~~rl~~L~~~~~~l~~~~~~~~~~~~~e~KI~eLy~~l~~~~~~~~~lP~lv~RL~t-L~~ 326 (388)
T PF04912_consen 248 LNELERQLSLLDPAKLDSIERRLKSLLSELEELAEKRKEAKEDAEQESKIDELYEILPRWDPYAPSLPSLVERLKT-LKS 326 (388)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHHhhhhhHHHHHHHH-HHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 586 LSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRER 650 (910)
Q Consensus 586 L~~~le~~~~~~~~lEk~~~~Le~e~~el~~~l~e~~~~~eE~e~~l~~~e~e~~~~~~~~e~l~ 650 (910)
+..+.......+..++..+..+...+..|+..+...+.. +...+..++.-+..+..++..++
T Consensus 327 lH~~a~~~~~~l~~le~~q~~l~~~l~~~~~~L~~ve~~---~~~N~~~i~~n~~~le~Ri~~L~ 388 (388)
T PF04912_consen 327 LHEEAAEFSQTLSELESQQSDLQSQLKKWEELLNKVEEK---FKENMETIEKNVKKLEERIAKLQ 388 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhccC
No 406
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=33.93 E-value=5.6e+02 Score=26.66 Aligned_cols=26 Identities=19% Similarity=0.108 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 554 CLTTLRLELKAAESKMRSYEVEISSQ 579 (910)
Q Consensus 554 ei~~l~~~lee~~~ki~~le~e~~~L 579 (910)
.+..+-.+...+......|+..+..|
T Consensus 171 ~L~~l~~e~~~L~~~~~~Le~qk~~L 196 (206)
T PF14988_consen 171 ELLQLIQEAQKLEARKSQLEKQKQQL 196 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 407
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=33.84 E-value=4.5e+02 Score=29.48 Aligned_cols=27 Identities=19% Similarity=0.353 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 754 AANAMAERLSLEVQSAQAKLDEMQQEL 780 (910)
Q Consensus 754 ea~~r~e~l~~ql~~~k~~i~~l~~e~ 780 (910)
+.....+++...+...+..+.++++++
T Consensus 65 e~~~~i~~L~~~Ik~r~~~l~DmEa~L 91 (330)
T PF07851_consen 65 EERELIEKLEEDIKERRCQLFDMEAFL 91 (330)
T ss_pred hHHHHHHHHHHHHHHHHhhHHHHHhhC
Confidence 344455556666666666666666544
No 408
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=33.72 E-value=6e+02 Score=26.91 Aligned_cols=49 Identities=14% Similarity=0.032 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 002544 423 LSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEA 471 (910)
Q Consensus 423 L~~qle~~k~e~~~~kkk~Ee~~~e~~~~k~kl~~eleel~~~~ee~e~ 471 (910)
+...+......+...+..|...+..++..+.+....+...=..+.+.++
T Consensus 158 ~~~K~~k~~~~~~~a~~~Y~~~v~~l~~~~~~~~~~~~~~~~~~Q~lEe 206 (239)
T cd07647 158 LKKKAAQCKTSAEEADSAYKSSIGCLEDARVEWESEHATACQVFQNMEE 206 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444445555566655555555555555555555555544444
No 409
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=33.62 E-value=3.2e+02 Score=23.67 Aligned_cols=19 Identities=21% Similarity=0.309 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 002544 530 FSSTLAEKEEEMKEKATKI 548 (910)
Q Consensus 530 ~~~~~~ele~ei~~~~~kl 548 (910)
|......+..+|......+
T Consensus 6 f~~~~~~l~~Wl~~~e~~l 24 (105)
T PF00435_consen 6 FQQEADELLDWLQETEAKL 24 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344555555655555544
No 410
>PF12004 DUF3498: Domain of unknown function (DUF3498); InterPro: IPR021887 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with PF00616 from PFAM, PF00168 from PFAM. This domain has two conserved sequence motifs: DLQ and PLSFQNP. ; PDB: 3BXJ_B.
Probab=33.56 E-value=14 Score=43.38 Aligned_cols=32 Identities=28% Similarity=0.421 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 551 AEQCLTTLRLELKAAESKMRSYEVEISSQKLE 582 (910)
Q Consensus 551 ~e~ei~~l~~~lee~~~ki~~le~e~~~L~~e 582 (910)
.+.+|..|++.|.....+++++++....-+.+
T Consensus 374 YEqEI~~LkErL~~S~rkLeEyErrLl~QEqq 405 (495)
T PF12004_consen 374 YEQEIQSLKERLRMSHRKLEEYERRLLSQEQQ 405 (495)
T ss_dssp --------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 55566677766666666666666655444433
No 411
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=33.30 E-value=2.9e+02 Score=25.63 Aligned_cols=42 Identities=17% Similarity=0.253 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 576 ISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQK 617 (910)
Q Consensus 576 ~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~e~~el~~~ 617 (910)
+..++.++..+..++..+...+..+..+...|.-+..+|++.
T Consensus 10 l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~ 51 (107)
T PF06156_consen 10 LDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRER 51 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444555555555555555555555544
No 412
>cd07649 F-BAR_GAS7 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Growth Arrest Specific protein 7. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Growth Arrest Specific protein 7 (GAS7) is mainly expressed in the brain and is required for neurite outgrowth. It may also play a role in the protection and migration of embryonic stem cells. Treatment-related acute myeloid leukemia (AML) has been reported resulting from mixed-lineage leukemia (MLL)-GAS7 translocations as a complication of primary cancer treatment. GAS7 contains an N-terminal SH3 domain, followed by a WW domain, and a central F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=33.02 E-value=6.2e+02 Score=26.87 Aligned_cols=9 Identities=0% Similarity=-0.182 Sum_probs=4.2
Q ss_pred HHHHHHHHH
Q 002544 274 DIRCSSAIQ 282 (910)
Q Consensus 274 ~~~C~~~l~ 282 (910)
...|..++.
T Consensus 18 ~~~~~el~~ 26 (233)
T cd07649 18 KQMQKEMAE 26 (233)
T ss_pred HHHHHHHHH
Confidence 344555444
No 413
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=33.00 E-value=2e+02 Score=22.27 Aligned_cols=38 Identities=24% Similarity=0.299 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 552 EQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEK 589 (910)
Q Consensus 552 e~ei~~l~~~lee~~~ki~~le~e~~~L~~el~dL~~~ 589 (910)
+.....|+...+.+......+..++..|..++..+...
T Consensus 4 E~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~k 41 (45)
T PF02183_consen 4 ERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEK 41 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444555555555555555555555555555555443
No 414
>PF08198 Thymopoietin: Thymopoietin protein; InterPro: IPR013146 This entry included thymopoietins; short proteins of 49 amino acid isolated from bovine spleen cells []. Thymopoietins (TMPOs) are a group of ubiquitously expressed nuclear proteins. They are suggested to play an important role in nuclear envelope organisation and cell cycle control []. Thymopoietins are characterised by LEM (LAP2, emerin, MAN1) domain, this is a globular module of approximately 40 amino acids, which is mostly found in the nucleoplasmic portions of metazoan inner nuclear membrane proteins. The LEM domain has been shown to mediate binding to BAF (barrier-to-autointegration factor) and BAF-DNA complexes. BAF dimers bind to double-stranded DNA non-specifically and thereby bridge DNA molecules to form a large, discrete nucleoprotein complex [, ]. The resolution of the solution structure of the LEM domain reveals that it is composed of a three-residue N-terminal helical turn and two large parallel alpha helices interacting through a set of conserved hydrophobic amino acids. The two helices, which are connected by a long loop are oriented at an angle of ~45 degree []. ; PDB: 1GJJ_A 1H9E_A.
Probab=32.98 E-value=8.2 Score=29.81 Aligned_cols=42 Identities=31% Similarity=0.395 Sum_probs=27.5
Q ss_pred chhHhhHHHHHHHHHhcCchhhhhhccCCChHHHHHHHHHhhccC
Q 002544 865 DYTKFTVQKLKQELTKHNFGAELLQLRNPNKKEILALYEKCILQK 909 (910)
Q Consensus 865 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 909 (910)
|=.-||..+||.+|+.||.. |-=.++.|.=-+.||-||+-.+
T Consensus 6 dPs~lTK~~LKseL~a~nV~---LP~g~~~KdvYVqLYlkhl~~~ 47 (49)
T PF08198_consen 6 DPSVLTKDRLKSELLAHNVA---LPSGEQRKDVYVQLYLKHLTAQ 47 (49)
T ss_dssp SBCCC-CCHHHHHHHHTT-------SSS-CCCHHHHCCCCCCTTT
T ss_pred cHHHHhHHHHHHHHHHcCCC---CCCCCcccchhHHHHHHHHHhc
Confidence 44458999999999999974 2233566666689999887554
No 415
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=32.81 E-value=5.6e+02 Score=26.30 Aligned_cols=15 Identities=40% Similarity=0.702 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHH
Q 002544 672 AVIERVQRQIESLER 686 (910)
Q Consensus 672 ~~ie~~~~~ie~Le~ 686 (910)
.++..++++|..|++
T Consensus 168 aQL~~lQ~qv~~Lq~ 182 (192)
T PF11180_consen 168 AQLRQLQRQVRQLQR 182 (192)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444433
No 416
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=32.06 E-value=1.1e+03 Score=29.45 Aligned_cols=15 Identities=27% Similarity=0.536 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHhh
Q 002544 768 SAQAKLDEMQQELTK 782 (910)
Q Consensus 768 ~~k~~i~~l~~e~~~ 782 (910)
.+|.+.+++..++.+
T Consensus 716 ~lkek~e~l~~e~~~ 730 (762)
T PLN03229 716 ELKEKFEELEAELAA 730 (762)
T ss_pred hHHHHHHHHHHHHHH
Confidence 355555566655553
No 417
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=32.04 E-value=9.4e+02 Score=28.68 Aligned_cols=10 Identities=40% Similarity=0.634 Sum_probs=5.1
Q ss_pred eEEEeecccc
Q 002544 49 FVWLLRDFYL 58 (910)
Q Consensus 49 f~WlvRDf~l 58 (910)
|.|=-||+.|
T Consensus 64 f~Wd~~ds~L 73 (741)
T KOG4460|consen 64 FLWDGEDSSL 73 (741)
T ss_pred EEEecCcceE
Confidence 4555555544
No 418
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=31.97 E-value=6.2e+02 Score=26.55 Aligned_cols=110 Identities=11% Similarity=0.195 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH
Q 002544 528 EEFSSTLAEKEEEMKEKATKIEHA----EQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEA----VNAKAQS 599 (910)
Q Consensus 528 ~E~~~~~~ele~ei~~~~~kl~~~----e~ei~~l~~~lee~~~ki~~le~e~~~L~~el~dL~~~le~----~~~~~~~ 599 (910)
..|...+......+.....++..+ .---..|...+..++.-+..+++.+..++.++.++...... ++..+..
T Consensus 100 ~~w~~al~na~a~lehq~~R~~NLeLl~~~g~naW~~~n~~Le~~~~~le~~l~~~k~~ie~vN~~RK~~Q~~~~~~L~~ 179 (221)
T PF05700_consen 100 EAWKEALDNAYAQLEHQRLRLENLELLSKYGENAWLIHNEQLEAMLKRLEKELAKLKKEIEEVNRERKRRQEEAGEELRY 179 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 600 FEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEK 637 (910)
Q Consensus 600 lEk~~~~Le~e~~el~~~l~e~~~~~eE~e~~l~~~e~ 637 (910)
|+.+...+-...-+++..+..++..+.++..+....+.
T Consensus 180 Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~~~~~~ 217 (221)
T PF05700_consen 180 LEQRWKELVSKNLEIEVACEELEQEIEQLKRKAAELKE 217 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 419
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=31.16 E-value=3.3e+02 Score=23.20 Aligned_cols=62 Identities=15% Similarity=0.225 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 369 LLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSL 430 (910)
Q Consensus 369 ~l~k~lee~e~~~~e~~k~le~~i~el~~~lee~~~~~~~l~~~~~~Le~e~~~L~~qle~~ 430 (910)
.+-..++.++..-+...+..+....+++..+....+..+.|...+..|......|..+++.+
T Consensus 7 qLl~ale~Lq~~y~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql~rL 68 (70)
T PF04899_consen 7 QLLSALEELQQSYEKQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQLERL 68 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 420
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=31.09 E-value=2e+02 Score=33.74 Aligned_cols=56 Identities=5% Similarity=0.067 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 559 RLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYL 614 (910)
Q Consensus 559 ~~~lee~~~ki~~le~e~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~e~~el 614 (910)
+..+.+.+.+...+++++..++.++..+..+.......+..++.++..|+.+++.+
T Consensus 68 qSALteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~ 123 (475)
T PRK13729 68 QHATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKAL 123 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhh
No 421
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=30.91 E-value=5.5e+02 Score=25.61 Aligned_cols=97 Identities=14% Similarity=0.261 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 555 LTTLRLELKAAESKMRSYEVEIS--SQKLETKELSEKLEAVNAK---AQSFEREARIMEQDKVYLEQKYKSEFERFEEVQ 629 (910)
Q Consensus 555 i~~l~~~lee~~~ki~~le~e~~--~L~~el~dL~~~le~~~~~---~~~lEk~~~~Le~e~~el~~~l~e~~~~~eE~e 629 (910)
.+.+..+.++..+....-.+... .....|.+...-+...... ...+..+...++.++..|+.++..++..+..+.
T Consensus 52 Ns~VRkqY~~~i~~AKkqRk~~~~~~~~ltl~~vI~fLq~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~ 131 (161)
T TIGR02894 52 NAYVRKQYEEAIELAKKQRKELKREAGSLTLQDVISFLQNLKTTNPSDQALQKENERLKNQNESLQKRNEELEKELEKLR 131 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccCcccCCHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 002544 630 ERCKVAEKEAKKATELADRERA 651 (910)
Q Consensus 630 ~~l~~~e~e~~~~~~~~e~l~~ 651 (910)
.++..++++...+-...+.++.
T Consensus 132 ~~~~~~~eDY~~L~~Im~RARk 153 (161)
T TIGR02894 132 QRLSTIEEDYQTLIDIMDRARK 153 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
No 422
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=30.60 E-value=6.2e+02 Score=26.11 Aligned_cols=177 Identities=12% Similarity=0.138 Sum_probs=0.0
Q ss_pred CCChHHHHHHHHhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 319 GPGKWQKLATFLQQSSEGPILDLVKRLIDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKL 398 (910)
Q Consensus 319 gp~k~~~l~~fl~~~~~~~il~~~~rl~~~~eke~~~L~~e~~~le~e~e~l~k~lee~e~~~~e~~k~le~~i~el~~~ 398 (910)
|-+-|-.+..+.....-.....-+..+...+..+-..+..+.. -++......+...++..+..-...
T Consensus 13 G~~~G~~~~~~~~~~~~~~A~~~A~~i~~~A~~eAe~~~ke~~-------------~eakee~~~~r~~~E~E~~~~~~e 79 (201)
T PF12072_consen 13 GIGIGYLVRKKINRKKLEQAEKEAEQILEEAEREAEAIKKEAE-------------LEAKEEAQKLRQELERELKERRKE 79 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 002544 399 ADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAARE 478 (910)
Q Consensus 399 lee~~~~~~~l~~~~~~Le~e~~~L~~qle~~k~e~~~~kkk~Ee~~~e~~~~k~kl~~eleel~~~~ee~e~~~~~le~ 478 (910)
+....+.+..-+..+..-...+..-...|+.-...+......++....++..........|+.+ ..+...+++-.-+..
T Consensus 80 l~~~E~rl~~rE~~L~~~~~~L~~~e~~l~~~~~~l~~~~~~l~~~~~e~~~~~~~~~~~Le~i-AglT~eEAk~~Ll~~ 158 (201)
T PF12072_consen 80 LQRLEKRLQQREEQLDRRLEQLEKREEELEKKEEELEQRKEELEEREEELEELIEEQQQELEEI-AGLTAEEAKEILLEK 158 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 479 QALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQ 512 (910)
Q Consensus 479 ~~~~~q~Elee~~~k~e~~~~~~k~~lek~~~~~ 512 (910)
--..+..++..+-++++. +++...++....+
T Consensus 159 le~e~~~e~a~~ir~~ee---eak~~A~~~Ar~I 189 (201)
T PF12072_consen 159 LEEEARREAAALIRRIEE---EAKEEADKKARRI 189 (201)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
No 423
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=30.12 E-value=2e+02 Score=33.70 Aligned_cols=58 Identities=16% Similarity=0.214 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 538 EEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNA 595 (910)
Q Consensus 538 e~ei~~~~~kl~~~e~ei~~l~~~lee~~~ki~~le~e~~~L~~el~dL~~~le~~~~ 595 (910)
...+.+.+.+..++++++..++.+++.+......++..++.++.++..|..+++....
T Consensus 68 qSALteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~~~ 125 (475)
T PRK13729 68 QHATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKALGA 125 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhc
No 424
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=29.92 E-value=5e+02 Score=26.42 Aligned_cols=74 Identities=14% Similarity=0.229 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 565 AESKMRSYEVEISSQKLETKELSEKLEAVNAKAQS-FEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKE 638 (910)
Q Consensus 565 ~~~ki~~le~e~~~L~~el~dL~~~le~~~~~~~~-lEk~~~~Le~e~~el~~~l~e~~~~~eE~e~~l~~~e~e 638 (910)
...++-.+-++...++..++.+..+.......... ..........++.+++.++...+..++.+..+.+...++
T Consensus 116 ~I~r~~~li~~l~~~~~~~~~~~kq~~~~~~~~~~~~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~e 190 (192)
T PF05529_consen 116 VIRRVHSLIKELIKLEEKLEALKKQAESASEAAEKLLKEENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQKE 190 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 425
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=29.88 E-value=2.6e+02 Score=34.44 Aligned_cols=83 Identities=18% Similarity=0.115 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 556 TTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVA 635 (910)
Q Consensus 556 ~~l~~~lee~~~ki~~le~e~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~e~~el~~~l~e~~~~~eE~e~~l~~~ 635 (910)
..+...+.....++..++..+..++.++..+...+.....-...-...+..+..++..++..++....+.+++...++++
T Consensus 552 ~~~~~~~~~~~~~~~~~e~~i~~le~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~w~~l~~~~~~~ 631 (638)
T PRK10636 552 AELRTQTQPLRKEIARLEKEMEKLNAQLAQAEEKLGDSELYDQSRKAELTACLQQQASAKSGLEECEMAWLEAQEQLEQM 631 (638)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHH
Q 002544 636 EKE 638 (910)
Q Consensus 636 e~e 638 (910)
+.+
T Consensus 632 ~~~ 634 (638)
T PRK10636 632 LLE 634 (638)
T ss_pred hhh
No 426
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=29.88 E-value=5e+02 Score=26.75 Aligned_cols=94 Identities=16% Similarity=0.202 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 002544 596 KAQSFEREARIMEQDKVYLEQKYKS----EFERFEEVQERCKVAEKEAKKATELADRERAEAAAARKGKSEFENLAMERM 671 (910)
Q Consensus 596 ~~~~lEk~~~~Le~e~~el~~~l~e----~~~~~eE~e~~l~~~e~e~~~~~~~~e~l~~e~~~~~~e~~e~~r~~~e~~ 671 (910)
+...|.+++..|+..+...+..... ......-+..+++.+ ++-.+.++..+.+........+..+.
T Consensus 97 EevrLkrELa~Le~~l~~~~~~~~~~~~~~~~~~~lvk~e~EqL----------L~YK~~ql~~~~~~~~~~~~~l~~v~ 166 (195)
T PF12761_consen 97 EEVRLKRELAELEEKLSKVEQAAESRRSDTDSKPALVKREFEQL----------LDYKERQLRELEEGRSKSGKNLKSVR 166 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHH----------HHHHHHHHHhhhccCCCCCCCHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 002544 672 AVIERVQRQIESLERQKTDLTNEVNRIR 699 (910)
Q Consensus 672 ~~ie~~~~~ie~Le~e~~~Le~Ele~~~ 699 (910)
+.|+.++.++..|+.-+..=..+++.++
T Consensus 167 ~Dl~~ie~QV~~Le~~L~~k~~eL~~L~ 194 (195)
T PF12761_consen 167 EDLDTIEEQVDGLESHLSSKKQELQQLR 194 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 427
>PTZ00464 SNF-7-like protein; Provisional
Probab=29.61 E-value=6.7e+02 Score=26.22 Aligned_cols=139 Identities=10% Similarity=0.086 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 558 LRLELKAAESKMRSYEVEISSQKLETKELSEKLEAV--------NAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQ 629 (910)
Q Consensus 558 l~~~lee~~~ki~~le~e~~~L~~el~dL~~~le~~--------~~~~~~lEk~~~~Le~e~~el~~~l~e~~~~~eE~e 629 (910)
+...+..+..++..+++.+..+..++..+...+... ...+..+=++.+.++.++..+...+..++.-...++
T Consensus 16 ~~d~~~~l~~r~~~l~kKi~~ld~E~~~ak~~~k~~~~~~~~~~K~~Al~~LK~KK~~E~ql~~l~~q~~nleq~~~~ie 95 (211)
T PTZ00464 16 LEDASKRIGGRSEVVDARINKIDAELMKLKEQIQRTRGMTQSRHKQRAMQLLQQKRMYQNQQDMMMQQQFNMDQLQFTTE 95 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHH--HHHHHHHHHHHHHHHH-----HHHHHHhhHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHhHHHHHHH
Q 002544 630 ERCKVAE--KEAKKATELADRERAE-----AAAARKGKSEFENLAMERMAVIER-----VQRQIESLERQKTDLTNEVN 696 (910)
Q Consensus 630 ~~l~~~e--~e~~~~~~~~e~l~~e-----~~~~~~e~~e~~r~~~e~~~~ie~-----~~~~ie~Le~e~~~Le~Ele 696 (910)
..-.+.+ ...+........+... ++.+..++.+......++...|.. ..-.=..|+.++..|+.++.
T Consensus 96 ~a~~~~~vv~amk~g~kaLK~~~k~i~id~Vd~l~Dei~E~~e~~~EI~e~Ls~~~~~~~~~DEdELe~ELe~Le~e~~ 174 (211)
T PTZ00464 96 SVKDTKVQVDAMKQAAKTLKKQFKKLNVDKVEDLQDELADLYEDTQEIQEIMGRAYDVPDDIDEDEMLGELDALDFDME 174 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHh
No 428
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=29.51 E-value=1.9e+02 Score=22.39 Aligned_cols=42 Identities=21% Similarity=0.300 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 453 DQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKY 494 (910)
Q Consensus 453 ~kl~~eleel~~~~ee~e~~~~~le~~~~~~q~Elee~~~k~ 494 (910)
+++....+.|+..++.+.+.+..|.+....+.+++..++.+.
T Consensus 1 KQlE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl 42 (45)
T PF02183_consen 1 KQLERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKL 42 (45)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 429
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=29.38 E-value=3.7e+02 Score=23.18 Aligned_cols=72 Identities=17% Similarity=0.163 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 534 LAEKEEEMKEKATKIEHAEQCLTTLRLELK-AAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREAR 605 (910)
Q Consensus 534 ~~ele~ei~~~~~kl~~~e~ei~~l~~~le-e~~~ki~~le~e~~~L~~el~dL~~~le~~~~~~~~lEk~~~ 605 (910)
+++.+..|..++.+--.+-=+|--+...+. .....+..+.++.-.|..++..+...+......+..+++.+.
T Consensus 2 lrEqe~~i~~L~KENF~LKLrI~fLee~l~~~~~~~~~~~~keNieLKve~~~L~~el~~~~~~l~~a~~~~e 74 (75)
T PF07989_consen 2 LREQEEQIDKLKKENFNLKLRIYFLEERLQKLGPESIEELLKENIELKVEVESLKRELQEKKKLLKEAEKAIE 74 (75)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 430
>PF14282 FlxA: FlxA-like protein
Probab=29.32 E-value=3.8e+02 Score=24.67 Aligned_cols=59 Identities=14% Similarity=0.237 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 566 ESKMRSYEVEISSQKLETKELSE----KLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFER 624 (910)
Q Consensus 566 ~~ki~~le~e~~~L~~el~dL~~----~le~~~~~~~~lEk~~~~Le~e~~el~~~l~e~~~~ 624 (910)
...|..|.+.+..|+.+|..|.. .-+.....+..|...+..|+.++..++.+.......
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~~~~~~~ 80 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQQAEQQQQ 80 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 431
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=29.22 E-value=4.4e+02 Score=25.99 Aligned_cols=63 Identities=19% Similarity=0.182 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 555 LTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQK 617 (910)
Q Consensus 555 i~~l~~~lee~~~ki~~le~e~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~e~~el~~~ 617 (910)
+..+-.....++..+......+..|+.++......++.....+..|++.++.+..++.+....
T Consensus 22 ~e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~ 84 (160)
T PF13094_consen 22 YEQLLDRKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKK 84 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 432
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=29.19 E-value=87 Score=31.39 Aligned_cols=52 Identities=21% Similarity=0.237 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 562 LKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKY 618 (910)
Q Consensus 562 lee~~~ki~~le~e~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~e~~el~~~l 618 (910)
|+.++.+++.......-|+.|| .+.+.+...++.|..+++.|.+|+ .+++++
T Consensus 2 LeD~EsklN~AIERnalLE~EL----dEKE~L~~~~QRLkDE~RDLKqEl-~V~ek~ 53 (166)
T PF04880_consen 2 LEDFESKLNQAIERNALLESEL----DEKENLREEVQRLKDELRDLKQEL-IVQEKL 53 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHCH---------------------
T ss_pred HHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHh
No 433
>PRK15396 murein lipoprotein; Provisional
Probab=28.91 E-value=3.4e+02 Score=23.68 Aligned_cols=48 Identities=15% Similarity=0.254 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 398 LADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVL 445 (910)
Q Consensus 398 ~lee~~~~~~~l~~~~~~Le~e~~~L~~qle~~k~e~~~~kkk~Ee~~ 445 (910)
++++++.++..|..+...+..+...+...+..++.+......+++...
T Consensus 26 kvd~LssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~raN~RlDn~~ 73 (78)
T PRK15396 26 KIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAARANQRLDNQA 73 (78)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 434
>PF11570 E2R135: Coiled-coil receptor-binding R-domain of colicin E2; InterPro: IPR024566 Bacteriocins are protein antibiotics that kill bacteria closely related to the producing species. Colicins are a subgroup of bacteriocins that are produced by and target Escherichia coli. The lethal action of most colicins is exerted either by formation of a pore in the cytoplasmic membrane of the target cell, or by an enzymatic nuclease digestion mechanism. Most colicins are able to translocate the outer membrane by a two-receptor system, where one receptor is used for the initial binding and the second for translocation. The initial binding is to cell surface receptors such as the porins OmpF, FepA, BtuB, Cir and FhuA. The presence of specific periplasmic proteins, such as TolA, TolB, TolC, or TonB, are required for translocation across the membrane []. Colicins are composed of domains with distinct functional roles. In general they contain a central R (receptor) domain that mediates receptor binding, an N-terminal T (translocation) domain that mediates translocation of the protein from the outer membrane receptor to the colicin's target within the cell, and a C-terminal C (catalytic) domain that performs the catalytic cleavage []. This entry represents the central R domain found in colicin-E2 and other colicins.; PDB: 2YSU_B 1UJW_B 2B5U_C 1JCH_A.
Probab=28.88 E-value=5.2e+02 Score=24.72 Aligned_cols=114 Identities=16% Similarity=0.215 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHH
Q 002544 583 TKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAE--------------------KEAKKA 642 (910)
Q Consensus 583 l~dL~~~le~~~~~~~~lEk~~~~Le~e~~el~~~l~e~~~~~eE~e~~l~~~e--------------------~e~~~~ 642 (910)
.+-+...++.+..++......+..+...+.....-+..-...++.....+..++ ..+..+
T Consensus 3 ve~a~rny~~a~aeL~~a~~~I~~~q~r~a~a~~~~~~r~seldqA~~~~~eae~k~~~~~a~~P~~~~~~~wqlkvr~a 82 (136)
T PF11570_consen 3 VEVAERNYEAARAELDQADEDIATLQERQASAEQALNGRRSELDQANKKVKEAEIKQDEFFANNPPHEYGRGWQLKVRRA 82 (136)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCTT-TTSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcccccccCCCccccccHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 002544 643 TELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVN 696 (910)
Q Consensus 643 ~~~~e~l~~e~~~~~~e~~e~~r~~~e~~~~ie~~~~~ie~Le~e~~~Le~Ele 696 (910)
...+......+.+++.++..++..+......|..+...+..-+..+.+.+.-|.
T Consensus 83 ~~dv~nkq~~l~AA~~~l~~~~~el~~~~~al~~A~e~Rkq~eskk~dAenkl~ 136 (136)
T PF11570_consen 83 QKDVQNKQNKLKAAQKELNAADEELNRIQAALSQAMERRKQKESKKKDAENKLN 136 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhhhhhhccC
No 435
>cd07680 F-BAR_PACSIN1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 1 (PACSIN1). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 1 or Syndapin I is expressed specifically in the brain and is localized in neurites and synaptic boutons. It binds the brain-specific proteins dynamin I, synaptojanin, synapsin I, and neural Wiskott-Aldrich syndrome protein (nWASP), and functions as a link between the cytoskeletal machinery and synaptic vesicle endocytosis. PACSIN 1 interacts with huntingtin and may be implicated in the neuropatholog
Probab=28.80 E-value=7.7e+02 Score=26.65 Aligned_cols=203 Identities=15% Similarity=0.192 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCcchH-HHHHHHHHHHHHhhhcc-CCCChHHH---HHHHHhH--hhhhHHHHHHHHH
Q 002544 273 ADIRCSSAIQSMERKLRAACHSSDASID-NVVKVLDGLISEYETSC-HGPGKWQK---LATFLQQ--SSEGPILDLVKRL 345 (910)
Q Consensus 273 s~~~C~~~l~~l~~~l~~~~~~~~~~~~-~~~~~~~~~~~~Y~~~~-~gp~k~~~---l~~fl~~--~~~~~il~~~~rl 345 (910)
....|..+..=+-+|-. +. .|.+.+..+...|...+ .||..|.. +..++.+ .+.+.=..+...|
T Consensus 17 g~~~~~dl~~f~kERA~---------IE~~Yak~L~~Lakk~~~~~~~~~~~Gtl~~aw~~i~~etE~ia~~H~~la~~L 87 (258)
T cd07680 17 GHRLCNDLMNCVQERAK---------IEKAYGQQLTDWAKRWRQLIEKGPQYGSLERAWGAIMTEADKVSELHQEVKNNL 87 (258)
T ss_pred hHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHH------------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 346 IDQIGSERSSLML------------KYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGEN 413 (910)
Q Consensus 346 ~~~~eke~~~L~~------------e~~~le~e~e~l~k~lee~e~~~~e~~k~le~~i~el~~~lee~~~~~~~l~~~~ 413 (910)
++.+...+..-+. +...++..++.+++.....-.. ..+-.......+...+.....-+......
T Consensus 88 ~~e~~e~~r~~qk~~~~k~~~~~~ke~K~~e~~~~KaQK~~~k~~k~----v~~sKk~Ye~~Cke~~~A~~~~~~a~~d~ 163 (258)
T cd07680 88 LNEDLEKVKNWQKDAYHKQIMGGFKETKEAEDGFRKAQKPWAKKMKE----LEAAKKAYHLACKEEKLAMTREANSKAEQ 163 (258)
T ss_pred HHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhhcccC
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH-HHHHHHHHHHHHHHHHH
Q 002544 414 ISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEA-RLAAAREQALSAQEEVE 488 (910)
Q Consensus 414 ~~Le~e~~~L~~qle~~k~e~~~~kkk~Ee~~~e~~~~k~kl~~eleel~~~~ee~e~-~~~~le~~~~~~q~Ele 488 (910)
+....+..-+...++...+.+++.+..|+..+..++........++...=..+.+.+. ++..+...+-.+..=++
T Consensus 164 ~~s~~q~eK~~~k~~k~~~~~~~sk~~Y~~~l~~ln~~~~~y~~~m~~vfd~~Q~~Ee~Ri~flk~~l~~~~~~l~ 239 (258)
T cd07680 164 SVTPEQQKKLQDKVDKCKQDVQKTQEKYEKVLDDVGKTTPQYMENMEQVFEQCQQFEEKRLVFLKEVLLDIKRHLN 239 (258)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
No 436
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=28.64 E-value=1.1e+03 Score=28.31 Aligned_cols=123 Identities=14% Similarity=0.159 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 553 QCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERC 632 (910)
Q Consensus 553 ~ei~~l~~~lee~~~ki~~le~e~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~e~~el~~~l~e~~~~~eE~e~~l 632 (910)
+++..|-.+...+.+-.+.|.--+..|-..+.+|....+-++.+........-.|+..+.++++.+..+..+......+-
T Consensus 301 rEVeNLilENsqLLetKNALNiVKNDLIakVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k~ea~~ar~~~ 380 (832)
T KOG2077|consen 301 REVENLILENSQLLETKNALNIVKNDLIAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKAEAEDARQKA 380 (832)
T ss_pred HHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 002544 633 KVAEKEAKKATELADRERAEAAAARKGKSEFENLAMERMAVIE 675 (910)
Q Consensus 633 ~~~e~e~~~~~~~~e~l~~e~~~~~~e~~e~~r~~~e~~~~ie 675 (910)
..-+...-=+-.+....+.++...-=++..+...++++++.+.
T Consensus 381 ~~~e~ddiPmAqRkRFTRvEMaRVLMeRNqYKErLMELqEavr 423 (832)
T KOG2077|consen 381 KDDEDDDIPMAQRKRFTRVEMARVLMERNQYKERLMELQEAVR 423 (832)
T ss_pred cccccccccHHHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHh
No 437
>PF07794 DUF1633: Protein of unknown function (DUF1633); InterPro: IPR012436 This family contains sequences derived from a group of hypothetical proteins expressed by Arabidopsis thaliana (Mouse-ear cress). These sequences are highly similar and the region concerned is about 100 residues long.
Probab=28.56 E-value=1e+03 Score=27.93 Aligned_cols=140 Identities=16% Similarity=0.214 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 555 LTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKV 634 (910)
Q Consensus 555 i~~l~~~lee~~~ki~~le~e~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~e~~el~~~l~e~~~~~eE~e~~l~~ 634 (910)
+..|.=++.....--..+-..+.-.+.+|.-+.-.+..+...++.|+...+.+....-+|... -...+..+..
T Consensus 578 ~eRLkmElst~kDlekG~Aeki~~me~Ei~glq~DkQ~ar~qIh~Le~~Reelsk~V~DLtss-------aQgakKAVhd 650 (790)
T PF07794_consen 578 IERLKMELSTSKDLEKGYAEKIGFMEMEIGGLQADKQTARNQIHRLEQRREELSKRVMDLTSS-------AQGAKKAVHD 650 (790)
T ss_pred hhhhheeeccccchhhhhHhhhhhhhhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------hhhhHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 002544 635 AEKEAKKATELADRERAEAAAARKGKSEFENL---AMERMAVIERVQRQIESLERQKTDLTNEVNRIRES 701 (910)
Q Consensus 635 ~e~e~~~~~~~~e~l~~e~~~~~~e~~e~~r~---~~e~~~~ie~~~~~ie~Le~e~~~Le~Ele~~~~~ 701 (910)
.+.++.....++-..-.+-=...++..-+... +..-.+-|..+-+.--.+--++.+|+.+++++...
T Consensus 651 aK~ElA~~Y~klLagiKEKwv~KKe~t~le~qAaEvesNlaLidqi~kaaIdltvEkprlqAeLdd~ea~ 720 (790)
T PF07794_consen 651 AKVELAAAYSKLLAGIKEKWVAKKEYTVLEGQAAEVESNLALIDQITKAAIDLTVEKPRLQAELDDLEAR 720 (790)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHhhchHHHhh
No 438
>KOG2010 consensus Double stranded RNA binding protein [General function prediction only]
Probab=28.24 E-value=7.6e+02 Score=27.37 Aligned_cols=97 Identities=14% Similarity=0.176 Sum_probs=0.0
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 573 EVEISSQKL-ETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERA 651 (910)
Q Consensus 573 e~e~~~L~~-el~dL~~~le~~~~~~~~lEk~~~~Le~e~~el~~~l~e~~~~~eE~e~~l~~~e~e~~~~~~~~e~l~~ 651 (910)
+.-+..+.. .+.+++..+..+--.-..|..+...|--++.-|+..+.+....+.+.-.++....+++.+.+...+-+..
T Consensus 110 EAs~~e~~Dskv~EveekykkaMvsnaQLDNEKsnl~YqVDtLKD~LeE~eeqLaeS~Re~eek~kE~er~Kh~~s~Lq~ 189 (405)
T KOG2010|consen 110 EASLSELRDSKVSEVEEKYKKAMVSNAQLDNEKNNLIYQVDTLKDVLEEQEEQLAESYRENEEKSKELERQKHMCSVLQH 189 (405)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHhhcccccceeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhhHHHHHHHHH
Q 002544 652 EAAAARKGKSEFENLAME 669 (910)
Q Consensus 652 e~~~~~~e~~e~~r~~~e 669 (910)
....+..+++.-...+.+
T Consensus 190 ~~~elKe~l~QRdeliee 207 (405)
T KOG2010|consen 190 KMEELKEGLRQRDELIEE 207 (405)
T ss_pred HHHHHHHHHHHHHHHHHH
No 439
>KOG4010 consensus Coiled-coil protein TPD52 [General function prediction only]
Probab=28.12 E-value=1.5e+02 Score=30.04 Aligned_cols=39 Identities=21% Similarity=0.359 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 350 GSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRY 388 (910)
Q Consensus 350 eke~~~L~~e~~~le~e~e~l~k~lee~e~~~~e~~k~l 388 (910)
+.|+..|+.++.++|.++..|++.|...+++..++.++|
T Consensus 43 e~Ekeelr~EL~kvEeEI~TLrqVLaAKerH~~ELKRKL 81 (208)
T KOG4010|consen 43 EEEKEELRTELAKVEEEIVTLRQVLAAKERHAAELKRKL 81 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 440
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=28.09 E-value=6.5e+02 Score=25.59 Aligned_cols=88 Identities=13% Similarity=0.060 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 555 LTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKV 634 (910)
Q Consensus 555 i~~l~~~lee~~~ki~~le~e~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~e~~el~~~l~e~~~~~eE~e~~l~~ 634 (910)
+.....-+.++++.+....+.+..+...++-.....+.......++.+.+..+...+..++..+.....---++-..+-.
T Consensus 76 ~~~~ks~~qeLe~~L~~~~qk~~tl~e~~en~K~~~e~tEer~~el~kklnslkk~~e~lr~el~k~~e~dpqv~~k~~~ 155 (203)
T KOG3433|consen 76 ICDRKSVLQELESQLATGSQKKATLGESIENRKAGREETEERTDELTKKLNSLKKILESLRWELAKIQETDPQVFEKKVH 155 (203)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHH
Q ss_pred HHHHHHHH
Q 002544 635 AEKEAKKA 642 (910)
Q Consensus 635 ~e~e~~~~ 642 (910)
.++...++
T Consensus 156 ~~K~~~ea 163 (203)
T KOG3433|consen 156 LEKTMAEA 163 (203)
T ss_pred HHHHHHHH
No 441
>KOG3809 consensus Microtubule-binding protein MIP-T3 [Cytoskeleton]
Probab=27.98 E-value=9.9e+02 Score=27.63 Aligned_cols=119 Identities=13% Similarity=0.175 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 432 NEISDWKRKYDQVL--------------TKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVA 497 (910)
Q Consensus 432 ~e~~~~kkk~Ee~~--------------~e~~~~k~kl~~eleel~~~~ee~e~~~~~le~~~~~~q~Elee~~~k~e~~ 497 (910)
+++.+.++.|+..- ....+..++|..-+..|-.-.-=+..-+..+.+-....+.|++-|+..|-..
T Consensus 447 qkIlETkke~e~~g~~~~p~e~~a~~~~sa~~~~~~~lr~~~Q~LtkSa~PLgkl~D~i~eD~daMq~EL~mWrse~rq~ 526 (583)
T KOG3809|consen 447 QKILETKKEIEDGGGQDQPEESDADKIMSAEREKMKQLREKLQDLTKSAYPLGKLFDFINEDIDAMQKELEMWRSEQRQN 526 (583)
T ss_pred HHHHHHHHHHHhcCCCCCCChhhhhhHHHHHHHHHHHHHHHHHHHHHhhccHHHHHhhhhhhHHHHHHHHHHHHHHHHHh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 498 VREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTL 558 (910)
Q Consensus 498 ~~~~k~~lek~~~~~e~~~~e~q~~~~~~~~E~~~~~~ele~ei~~~~~kl~~~e~ei~~l 558 (910)
. .+|.+.+.......+-++..+.. ++..+....+.|...+.++...+.+|..+
T Consensus 527 ~----~elq~eq~~t~~a~epL~~~la~----lq~~I~d~~e~i~~~r~~IL~Ne~rIqk~ 579 (583)
T KOG3809|consen 527 E----QELQNEQAATFGASEPLYNILAN----LQKEINDTKEEISKARGRILNNEKRIQKF 579 (583)
T ss_pred H----HHHHhhhhcccccchHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhhHHHHHHH
No 442
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=27.85 E-value=6.7e+02 Score=25.60 Aligned_cols=158 Identities=14% Similarity=0.143 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 514 RTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHA----------------EQCLTTLRLELKAAESKMRSYEVEIS 577 (910)
Q Consensus 514 ~~~~e~q~~~~~~~~E~~~~~~ele~ei~~~~~kl~~~----------------e~ei~~l~~~lee~~~ki~~le~e~~ 577 (910)
....+.+.....+..-+.+++..+-..+.++...+... ...+.++-..|++-.-++.+|..-+.
T Consensus 5 ~a~qe~Qq~qa~Lv~~LQ~KV~qYr~rc~ele~~l~~~~~l~~~~~~~~~~~e~s~dLe~~l~rLeEEqqR~~~L~qvN~ 84 (182)
T PF15035_consen 5 DAYQEEQQRQAQLVQRLQAKVLQYRKRCAELEQQLSASQVLESPSQRRRSEEEHSPDLEEALIRLEEEQQRSEELAQVNA 84 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcCcccccccccccCcccHHHHHHHHHHHHHhHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 578 SQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEV----QERCKVAEKEAKKATELADRERAEA 653 (910)
Q Consensus 578 ~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~e~~el~~~l~e~~~~~eE~----e~~l~~~e~e~~~~~~~~e~l~~e~ 653 (910)
.|..+++.....-+.+...+..+......+..++..-+..+......+... ...+=.++.++..++..+.+++..
T Consensus 85 lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~ke~~~~~ee~~~~~y~~~eh~rll~LWr~v~~lRr~f~elr~~- 163 (182)
T PF15035_consen 85 LLREQLEQARKANEALQEDLQKLTQDWERLRDELEQKEAEWREEEENFNQYLSSEHSRLLSLWREVVALRRQFAELRTA- 163 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHHHHHHHH-
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 002544 654 AAARKGKSEFENLAMERMAVIERVQRQI 681 (910)
Q Consensus 654 ~~~~~e~~e~~r~~~e~~~~ie~~~~~i 681 (910)
.++.+.....++.+.-+.+
T Consensus 164 ---------TerdL~~~r~e~~r~~r~~ 182 (182)
T PF15035_consen 164 ---------TERDLSDMRAEFARTSRSV 182 (182)
T ss_pred ---------HHhhHHHHHHHHHHHHccC
No 443
>PF10220 DUF2146: Uncharacterized conserved protein (DUF2146); InterPro: IPR019354 Smg8 and Smg9 are two subunits of the Smg-1 complex. They suppress Smg-1 kinase activity in the isolated Smg-1 complex, and are involved in nonsense-mediated mRNA decay (NMD) in both mammals and nematodes []. NMD is a surveillance mechanism that detects and degrades mRNAs containing premature translation termination codons.
Probab=27.54 E-value=2.2e+02 Score=36.29 Aligned_cols=76 Identities=24% Similarity=0.320 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccCCCCChHHHHHHHHHHHHHHHHHhhcccCCChhhhHHHHHHHHHHHHHHHHHHHHHH
Q 002544 190 VEEAECRRAYDSATETYMSTFDRSKPPEEVALGEAHEAAVQKALAVYNAGAVGVGLARKKYEGLLQKFFRKAFEDHKKNV 269 (910)
Q Consensus 190 ~~~~e~~~a~~~A~~~Y~~~m~~~~~~~e~~L~~~H~~~~~~Al~~F~~~~~g~~~~~~~~~~~L~~~l~~~~~~~~~~n 269 (910)
+...-|..|+..|.+.|.+.+-..-+-. .|+.-..+|+.+|...+-| .....|..+|...|...+..-++.-
T Consensus 393 Fs~~~C~~~l~~A~~~Y~~~lP~~Y~~~------~H~~~l~~A~~~~~~~arG--p~~~~~~~~L~~~C~~~W~~Grq~C 464 (895)
T PF10220_consen 393 FSEHRCEKALPLAKEAYQENLPAHYSSA------EHENKLAQALRVFESHARG--PAVEKYLEKLQEECDAIWQSGRQLC 464 (895)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcccCHH------HHHHHHHHHHHHHHHHccC--chHHHHHHHHHHHHHHHHHHHHhhh
Q ss_pred HHHH
Q 002544 270 YMEA 273 (910)
Q Consensus 270 ~~~s 273 (910)
+..|
T Consensus 465 E~~S 468 (895)
T PF10220_consen 465 EAVS 468 (895)
T ss_pred hhhc
No 444
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=27.15 E-value=5.8e+02 Score=24.68 Aligned_cols=108 Identities=13% Similarity=0.188 Sum_probs=0.0
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 462 LKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQE-RTSKEMQQREDVLREEFSSTLAEKEEE 540 (910)
Q Consensus 462 l~~~~ee~e~~~~~le~~~~~~q~Elee~~~k~e~~~~~~k~~lek~~~~~e-~~~~e~q~~~~~~~~E~~~~~~ele~e 540 (910)
+..-+++=...+............++++++..|+...+.++..-........ ....+........+.+..........+
T Consensus 32 i~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~l~~Ar~eA~~~~~~a~~~A~~ea~~~~~~A~~~~~~~~~~a~~~ 111 (141)
T PRK08476 32 LLKFMDNRNASIKNDLEKVKTNSSDVSEIEHEIETILKNAREEANKIRQKAIAKAKEEAEKKIEAKKAELESKYEAFAKQ 111 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 002544 541 MKEKATKIEH-AEQCLTTLRLELKAAESKM 569 (910)
Q Consensus 541 i~~~~~kl~~-~e~ei~~l~~~lee~~~ki 569 (910)
+..-...+.. +..++..+...+.....+|
T Consensus 112 l~~e~~~~~~~l~~qv~~~~~~~~~~~~~~ 141 (141)
T PRK08476 112 LANQKQELKEQLLSQMPEFKEALNAKLSKI 141 (141)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHhhcC
No 445
>cd07667 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX30 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=27.10 E-value=8e+02 Score=26.25 Aligned_cols=182 Identities=10% Similarity=0.056 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 553 QCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERC 632 (910)
Q Consensus 553 ~ei~~l~~~lee~~~ki~~le~e~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~e~~el~~~l~e~~~~~eE~e~~l 632 (910)
.+-.+++.....+...+..+++-..++..+..++...+.+.+.....+..--..+..-+..+-.-+......+..+....
T Consensus 51 ~eF~e~~ey~d~l~~~l~~ieki~~Rv~kr~~~l~~d~~e~~~~f~~ws~lE~~l~~~L~~~a~~~~~~s~~l~~l~~~~ 130 (240)
T cd07667 51 LEFAAIGDYLDTFALKLGTIDRIAQRIIKEEIEYLVELREYGPVYSTWSGLEGELAEPLEGVSACIGNCSTALEELTEDM 130 (240)
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 633 KVAEKEAKKATELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSKVALL 712 (910)
Q Consensus 633 ~~~e~e~~~~~~~~e~l~~e~~~~~~e~~e~~r~~~e~~~~ie~~~~~ie~Le~e~~~Le~Ele~~~~~~~~~~~~~~el 712 (910)
... +......+.-.-..+..+-+.....+.+++.+...+.-...+...+
T Consensus 131 ~~~-------------------------------yl~~Lke~~~Y~~slk~vlK~RdqkQ~d~E~l~E~l~~rre~~~kL 179 (240)
T cd07667 131 TED-------------------------------FLPVLREYILYSESMKNVLKKRDQVQAEYEAKLEAVALRKEERPKV 179 (240)
T ss_pred hHH-------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002544 713 EARVEEREKEIESLLESNNEQRASTVKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKLDEMQQELT 781 (910)
Q Consensus 713 E~rl~e~eee~e~l~~r~~~qr~~~i~~Le~~le~e~~~~~ea~~r~e~l~~ql~~~k~~i~~l~~e~~ 781 (910)
+.++++....++.. +.....++...+. .++.+....=...+.+.|+-+++-+.
T Consensus 180 e~~ie~~~~~ve~f----~~~~~~E~~~Fe~------------~K~~e~k~~l~~~Ad~~i~fy~~~~~ 232 (240)
T cd07667 180 PTDVEKCQDRVECF----NADLKADMERWQN------------NKRQDFRQLLMGMADKNIQYYEKCLT 232 (240)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHH
No 446
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=27.09 E-value=1.5e+03 Score=29.61 Aligned_cols=466 Identities=10% Similarity=0.053 Sum_probs=0.0
Q ss_pred CcchHHHHHHHHHHHHHhhhc--cCCCChHHHHHHHHhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhH----HHHHHH
Q 002544 296 DASIDNVVKVLDGLISEYETS--CHGPGKWQKLATFLQQSSEGPILDLVKRLIDQIGSERSSLMLKYRSI----EDNMKL 369 (910)
Q Consensus 296 ~~~~~~~~~~~~~~~~~Y~~~--~~gp~k~~~l~~fl~~~~~~~il~~~~rl~~~~eke~~~L~~e~~~l----e~e~e~ 369 (910)
|.+|+.|...+----..|... +....+..+|..-+.-..-..|-...+.-...++..+..++..+..+ +.+...
T Consensus 137 Gld~~~F~~~~~l~Qg~~~~fl~a~~~eR~~il~~l~g~~~y~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~ 216 (1042)
T TIGR00618 137 KLDYKTFTRVVLLPQGEFAQFLKAKSKEKKELLMNLFPLDQYTQLALMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDT 216 (1042)
T ss_pred CCCHHHHhhheeecccchHHHHhCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Q 002544 370 LKKQLEDSERYKSEYLKRYDDAINDKK--KLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYD-QVLT 446 (910)
Q Consensus 370 l~k~lee~e~~~~e~~k~le~~i~el~--~~lee~~~~~~~l~~~~~~Le~e~~~L~~qle~~k~e~~~~kkk~E-e~~~ 446 (910)
+..++..+......+.......-.... ..+.............+..+......+..++..+............ ..+.
T Consensus 217 l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 296 (1042)
T TIGR00618 217 YHERKQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQLLKQLRARIEELRAQEAVLEETQERINRARKAAPLA 296 (1042)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 447 KQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVL 526 (910)
Q Consensus 447 e~~~~k~kl~~eleel~~~~ee~e~~~~~le~~~~~~q~Elee~~~k~e~~~~~~k~~lek~~~~~e~~~~e~q~~~~~~ 526 (910)
........+..++..+...+......+...-.....++.+...+....... ............+......+...+..
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~- 373 (1042)
T TIGR00618 297 AHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLL--QTLHSQEIHIRDAHEVATSIREISCQ- 373 (1042)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhChhhHHHHHHHHHHHHHHHH-
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 527 REEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARI 606 (910)
Q Consensus 527 ~~E~~~~~~ele~ei~~~~~kl~~~e~ei~~l~~~lee~~~ki~~le~e~~~L~~el~dL~~~le~~~~~~~~lEk~~~~ 606 (910)
.......+......+......+......+..+............. +..+..++......... ...+..
T Consensus 374 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~-~~~~~~ 441 (1042)
T TIGR00618 374 -------QHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSA----FRDLQGQLAHAKKQQEL-QQRYAE 441 (1042)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhHH-HHHHHH
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH--------------HHHHH
Q 002544 607 MEQDKVYLEQ-KYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAARKGKSEFENL--------------AMERM 671 (910)
Q Consensus 607 Le~e~~el~~-~l~e~~~~~eE~e~~l~~~e~e~~~~~~~~e~l~~e~~~~~~e~~e~~r~--------------~~e~~ 671 (910)
+......+.. .+......+......+......+..........+ .+.........+... ..-..
T Consensus 442 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~r~~l~~~~~cplcgs~~hp~~~~~~~ 520 (1042)
T TIGR00618 442 LCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQET-RKKAVVLARLLELQEEPCPLCGSCIHPNPARQDI 520 (1042)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCCCCCCCCCCCCCCCChhhccC
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 002544 672 AVIERVQRQIESLERQKTDLTNEVNRIRESELEALSKVALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERRS 751 (910)
Q Consensus 672 ~~ie~~~~~ie~Le~e~~~Le~Ele~~~~~~~~~~~~~~elE~rl~e~eee~e~l~~r~~~qr~~~i~~Le~~le~e~~~ 751 (910)
.........+.........+...+..++............+...+.....++..+ ..........+..+..........
T Consensus 521 ~~~~~~~~~~~~~~~~~~~L~~~~~~l~~ql~~l~~q~~~lq~ql~ql~~ql~~l-~q~wqe~~~~l~~~~~~~~~l~~~ 599 (1042)
T TIGR00618 521 DNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSIL-TQCDNRSKEDIPNLQNITVRLQDL 599 (1042)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhccccchHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002544 752 RAAANAMAERLSLEVQSAQAKLDEMQQELT 781 (910)
Q Consensus 752 ~~ea~~r~e~l~~ql~~~k~~i~~l~~e~~ 781 (910)
..........+..+ ++..+..+...+.
T Consensus 600 lq~~~q~~~~l~~~---~~~~l~ql~~~l~ 626 (1042)
T TIGR00618 600 TEKLSEAEDMLACE---QHALLRKLQPEQD 626 (1042)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHH
No 447
>PRK11546 zraP zinc resistance protein; Provisional
Probab=26.94 E-value=4.5e+02 Score=25.74 Aligned_cols=71 Identities=11% Similarity=0.140 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 431 KNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREA 501 (910)
Q Consensus 431 k~e~~~~kkk~Ee~~~e~~~~k~kl~~eleel~~~~ee~e~~~~~le~~~~~~q~Elee~~~k~e~~~~~~ 501 (910)
...++.+..+|......+....-.-..+|..|-..-.--.+++.++.+....++..+.+.+.+++.++++.
T Consensus 49 Qa~~q~I~~~f~~~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL~e~r~~~~~~~~k~ 119 (143)
T PRK11546 49 QAAWQKIHNDFYAQTSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQSLDELRVKRDIAMAEA 119 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
No 448
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=26.93 E-value=6.9e+02 Score=25.44 Aligned_cols=123 Identities=11% Similarity=0.097 Sum_probs=0.0
Q ss_pred CCChHHH---HHHHHhHhhhhHHHHHHHHHHHH------------HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 002544 319 GPGKWQK---LATFLQQSSEGPILDLVKRLIDQ------------IGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSE 383 (910)
Q Consensus 319 gp~k~~~---l~~fl~~~~~~~il~~~~rl~~~------------~eke~~~L~~e~~~le~e~e~l~k~lee~e~~~~e 383 (910)
||.|+.+ ..+.||+-+..+++...+=-+.. +..-+.+|+.++.........+.+..+....-
T Consensus 34 G~kKgIv~~tvKdvLQsLvDD~lV~~eKIgtSnyywsfps~a~~~~ks~~qeLe~~L~~~~qk~~tl~e~~en~K~~--- 110 (203)
T KOG3433|consen 34 GSKKGIVWQTVKDVLQSLVDDGLVIKEKIGTSNYYWSFPSEAICDRKSVLQELESQLATGSQKKATLGESIENRKAG--- 110 (203)
T ss_pred CCccceehhHHHHHHHHHhccchHHHHHhcccccccccchHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHhh---
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 384 YLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVL 445 (910)
Q Consensus 384 ~~k~le~~i~el~~~lee~~~~~~~l~~~~~~Le~e~~~L~~qle~~k~e~~~~kkk~Ee~~ 445 (910)
...-++--.++..++..++..+..+.-++...+.---..-..+-.+.....+..-..-+.+
T Consensus 111 -~e~tEer~~el~kklnslkk~~e~lr~el~k~~e~dpqv~~k~~~~~K~~~eaanrwtDnI 171 (203)
T KOG3433|consen 111 -REETEERTDELTKKLNSLKKILESLRWELAKIQETDPQVFEKKVHLEKTMAEAANRWTDNI 171 (203)
T ss_pred -hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHhhhhhhH
No 449
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=26.91 E-value=3.5e+02 Score=22.88 Aligned_cols=50 Identities=12% Similarity=0.194 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 541 MKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKL 590 (910)
Q Consensus 541 i~~~~~kl~~~e~ei~~l~~~lee~~~ki~~le~e~~~L~~el~dL~~~l 590 (910)
+.+.+.++...+.++..+...+..++......+..+..+..+|..+....
T Consensus 1 ~~~i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~ 50 (71)
T PF10779_consen 1 LQDIKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKSNT 50 (71)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 450
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=26.87 E-value=3.2e+02 Score=28.19 Aligned_cols=90 Identities=9% Similarity=0.152 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 002544 402 YTSRINNLQGENISLREKSSS----LSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAR 477 (910)
Q Consensus 402 ~~~~~~~l~~~~~~Le~e~~~----L~~qle~~k~e~~~~kkk~Ee~~~e~~~~k~kl~~eleel~~~~ee~e~~~~~le 477 (910)
+.++++.|..++..++..... -.....-++.+.+++-.--+..+.+++.-...-...+..++.-++..++++..|+
T Consensus 101 LkrELa~Le~~l~~~~~~~~~~~~~~~~~~~lvk~e~EqLL~YK~~ql~~~~~~~~~~~~~l~~v~~Dl~~ie~QV~~Le 180 (195)
T PF12761_consen 101 LKRELAELEEKLSKVEQAAESRRSDTDSKPALVKREFEQLLDYKERQLRELEEGRSKSGKNLKSVREDLDTIEEQVDGLE 180 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHH
Q 002544 478 EQALSAQEEVEEWK 491 (910)
Q Consensus 478 ~~~~~~q~Elee~~ 491 (910)
.-+..-+++++.++
T Consensus 181 ~~L~~k~~eL~~L~ 194 (195)
T PF12761_consen 181 SHLSSKKQELQQLR 194 (195)
T ss_pred HHHHHHHHHHHHhc
No 451
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=26.47 E-value=5.1e+02 Score=23.82 Aligned_cols=68 Identities=18% Similarity=0.193 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 347 DQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLRE 418 (910)
Q Consensus 347 ~~~eke~~~L~~e~~~le~e~e~l~k~lee~e~~~~e~~k~le~~i~el~~~lee~~~~~~~l~~~~~~Le~ 418 (910)
.++......|+..+-.-++....|..++...+.. +++++.++.-|.-..+++.+.+..|+.++.....
T Consensus 8 sKLraQ~~vLKKaVieEQ~k~~~L~e~Lk~ke~~----LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~~~~~ 75 (102)
T PF10205_consen 8 SKLRAQNQVLKKAVIEEQAKNAELKEQLKEKEQA----LRKLEQENDSLTFRNQQLTKRVEVLQEELEESEQ 75 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
No 452
>KOG4787 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.47 E-value=1.2e+03 Score=28.07 Aligned_cols=210 Identities=10% Similarity=0.027 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 381 KSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIE 460 (910)
Q Consensus 381 ~~e~~k~le~~i~el~~~lee~~~~~~~l~~~~~~Le~e~~~L~~qle~~k~e~~~~kkk~Ee~~~e~~~~k~kl~~ele 460 (910)
+..+.+-++.++..++..++.+.+....|.+++.+|+..+. ..-..++-+.+-+++-..+-.... ++++....+
T Consensus 330 ~~~Q~~~~~~~~~~~~Tr~Er~Er~~D~L~rri~~~~~~~~--R~~~s~A~~K~~E~K~~~~~~~~~----~r~i~~~~~ 403 (852)
T KOG4787|consen 330 AHLQLELAESQVQHLNTKIERLEKTNDHLNKKIVELEADCK--RGGVTSAHSKAGEFKLTPEMEKDM----SKMIVTISE 403 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhc--ccchHHHHHHhhhhhcChHhHhHH----HHHHHHHHH
Q ss_pred HHHhhhHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 461 VLKSRSTAAEAR----------------LAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQRED 524 (910)
Q Consensus 461 el~~~~ee~e~~----------------~~~le~~~~~~q~Elee~~~k~e~~~~~~k~~lek~~~~~e~~~~e~q~~~~ 524 (910)
.+....+..+.. .......+...|++..+++--|=..--.++..|.+......+...-++.++.
T Consensus 404 ~~~~~~~~s~~~r~L~~~~~~~~~~~~~~~s~~~Ei~~~QA~M~E~~Dt~~~~dV~~~~sL~~~LeqAsK~CRIL~~RL~ 483 (852)
T KOG4787|consen 404 LERKNLELTTQVKQLETKVTPKPNFVVPSGTTTTELRKEQAQMNELKDTVFKSDVQKVISLATKLEQANKQCRILNERLN 483 (852)
T ss_pred HHHhcccHHHHHHHHhhccccchhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 525 VLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSF 600 (910)
Q Consensus 525 ~~~~E~~~~~~ele~ei~~~~~kl~~~e~ei~~l~~~lee~~~ki~~le~e~~~L~~el~dL~~~le~~~~~~~~l 600 (910)
. ..+.......--.....+|..++.++.--..---.+...++.++..+..+......|....-.-+.-....
T Consensus 484 K----~~R~q~R~~~~~~~d~~kIK~LE~e~R~S~~Ls~~L~~ElE~~~~~~~~~e~~~evL~~~~~~t~~l~Kq~ 555 (852)
T KOG4787|consen 484 K----LHRKQVRDGEIQYSDELKIKILELEKRLSEKLAIDLVSELEGKIPTIDEIEQCCEVLAAVETQTGRLCKQF 555 (852)
T ss_pred H----HHHHHHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHhHHHHHHHHHHHHhhhHHHHHHHH
No 453
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=26.46 E-value=3e+02 Score=22.58 Aligned_cols=40 Identities=18% Similarity=0.308 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 559 RLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQ 598 (910)
Q Consensus 559 ~~~lee~~~ki~~le~e~~~L~~el~dL~~~le~~~~~~~ 598 (910)
...+..++..+..+..+...|..++..|...+..+....+
T Consensus 25 k~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~~ 64 (64)
T PF00170_consen 25 KQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSENH 64 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
No 454
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.45 E-value=4.1e+02 Score=22.73 Aligned_cols=55 Identities=18% Similarity=0.223 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 543 EKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKA 597 (910)
Q Consensus 543 ~~~~kl~~~e~ei~~l~~~lee~~~ki~~le~e~~~L~~el~dL~~~le~~~~~~ 597 (910)
.+..++.+++.+++-....++++...+......+..++..+.-|..++.+.....
T Consensus 5 ~lE~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~L~~kl~~~~~~~ 59 (72)
T COG2900 5 ELEARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRLLTEKLKDLQPSA 59 (72)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
No 455
>cd07674 F-BAR_FCHO1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 1 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FCH domain Only 1 (FCHO1) may be involved in clathrin-coated vesicle formation. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO2 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=26.32 E-value=8.4e+02 Score=26.24 Aligned_cols=217 Identities=11% Similarity=0.110 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhccCCCcchHHHHHHHHHHHHHhhhccCCCChHHHHHHHHhHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 281 IQSMERKLRAACHSSDASIDNVVKVLDGLISEYETSCHGPGKWQKLATFLQQSSEGPILDLVKRLIDQIGSERSSLMLKY 360 (910)
Q Consensus 281 l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~gp~k~~~l~~fl~~~~~~~il~~~~rl~~~~eke~~~L~~e~ 360 (910)
+..|..+|.++...... +..|++....+...|-. -|..+-.....++-...+...-..+..+.+.+-.--
T Consensus 7 ~~~l~~r~k~g~~~~ke-l~~flkeRa~IEe~Yak---------~L~klak~~~~~~e~Gtl~~~w~~~~~~~E~~a~~H 76 (261)
T cd07674 7 FDVLYHNMKHGQISTKE-LADFVRERAAIEETYSK---------SMSKLSKMASNGSPLGTFAPMWEVFRVSSDKLALCH 76 (261)
T ss_pred hHHHHHHHHhHHHHHHH-HHHHHHHHHHHHHHHHH---------HHHHHHhcccCCCccchHHHHHHHHHHHHHHHHHHH
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHH
Q 002544 361 RSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSL---------SKTVDSLK 431 (910)
Q Consensus 361 ~~le~e~e~l~k~lee~e~~~~e~~k~le~~i~el~~~lee~~~~~~~l~~~~~~Le~e~~~L---------~~qle~~k 431 (910)
..+-..+..+.+.+...........++..+++......+...+.....+.+.+..-+..|.+. .+++++++
T Consensus 77 ~~l~~~L~~~~~~i~~~~~~~~k~~kk~~e~~~~~~~~~q~~q~~~~~l~kaK~~Y~~~cke~e~a~~~~~s~k~leK~~ 156 (261)
T cd07674 77 LELMRKLNDLIKDINRYGDEQVKIHKKTKEEAIGTLEAVQSLQVQSQHLQKSRENYHSKCVEQERLRREGVPQKELEKAE 156 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 432 NEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEA-RLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEK 507 (910)
Q Consensus 432 ~e~~~~kkk~Ee~~~e~~~~k~kl~~eleel~~~~ee~e~-~~~~le~~~~~~q~Elee~~~k~e~~~~~~k~~lek 507 (910)
..+......|...+...+.++......+...=.++.+.++ ++..+...+.....-+.+.....+..-...+..++.
T Consensus 157 ~K~~ka~~~y~~~~~ky~~~~~~~~~~m~~~~~~~Q~~Ee~Ri~~lk~~L~~~~~~~~~~~~~~~~~~e~~~~~l~~ 233 (261)
T cd07674 157 LKTKKAAESLRGSVEKYNRARGDFEQKMLESAQKFQDIEETHLRHMKLLIKGYSHSVEDTHVQIGQVHEEFKQNVEN 233 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHh
No 456
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=26.32 E-value=4.4e+02 Score=24.58 Aligned_cols=52 Identities=10% Similarity=0.102 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 570 RSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSE 621 (910)
Q Consensus 570 ~~le~e~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~e~~el~~~l~e~ 621 (910)
..+-.....++.++..+..++..+...+..+-.+...|.-+..+|+..+...
T Consensus 4 ~elfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 4 KEIFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 457
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=26.23 E-value=4.7e+02 Score=23.32 Aligned_cols=84 Identities=17% Similarity=0.357 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 353 RSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADD-YTSRINNLQGENISLREKSSSLSKTVDSLK 431 (910)
Q Consensus 353 ~~~L~~e~~~le~e~e~l~k~lee~e~~~~e~~k~le~~i~el~~~lee-~~~~~~~l~~~~~~Le~e~~~L~~qle~~k 431 (910)
.+.+...-...+..++.+...|-.. |..+++.-+..++.-.+. ..+.+..|+.++..+..++..|..+++..+
T Consensus 3 ~~~~~~~~~ev~~~ve~vA~eLh~~------YssKHE~KV~~LKksYe~rwek~v~~L~~e~~~l~~E~e~L~~~l~~e~ 76 (87)
T PF12709_consen 3 KKKLEESQKEVEKAVEKVARELHAL------YSSKHETKVKALKKSYEARWEKKVDELENENKALKRENEQLKKKLDTER 76 (87)
T ss_pred HhHHhhhHHHHHHHHHHHHHHHHHH------HhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHH
Q 002544 432 NEISDWKRKYD 442 (910)
Q Consensus 432 ~e~~~~kkk~E 442 (910)
.+....-+-++
T Consensus 77 ~Ek~~Ll~ll~ 87 (87)
T PF12709_consen 77 EEKQELLKLLE 87 (87)
T ss_pred HHHHHHHHhhC
No 458
>PRK11546 zraP zinc resistance protein; Provisional
Probab=26.09 E-value=6.3e+02 Score=24.74 Aligned_cols=60 Identities=10% Similarity=0.162 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 518 EMQQREDVLREEFSSTLAEKEEEMKEKATKIEHA-------EQCLTTLRLELKAAESKMRSYEVEIS 577 (910)
Q Consensus 518 e~q~~~~~~~~E~~~~~~ele~ei~~~~~kl~~~-------e~ei~~l~~~lee~~~ki~~le~e~~ 577 (910)
+.+...+.+.++|......+-.++-..+.++..+ ...|..+..++..+..++........
T Consensus 47 EQQa~~q~I~~~f~~~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL~e~r~~~~ 113 (143)
T PRK11546 47 EQQAAWQKIHNDFYAQTSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQSLDELRVKRD 113 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
No 459
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=26.07 E-value=1.2e+03 Score=27.95 Aligned_cols=165 Identities=13% Similarity=0.135 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 342 VKRLIDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSS 421 (910)
Q Consensus 342 ~~rl~~~~eke~~~L~~e~~~le~e~e~l~k~lee~e~~~~e~~k~le~~i~el~~~lee~~~~~~~l~~~~~~Le~e~~ 421 (910)
.......++.+-+.+. .+....--+...+...+.+.....+...++..+.+...++......+..-+..+..-...++
T Consensus 23 a~~~l~~Ae~eAe~i~--keA~~eAke~~ke~~~EaeeE~~~~R~Ele~el~~~e~rL~qrE~rL~qRee~Lekr~e~Le 100 (514)
T TIGR03319 23 AEKKLGSAEELAKRII--EEAKKEAETLKKEALLEAKEEVHKLRAELERELKERRNELQRLERRLLQREETLDRKMESLD 100 (514)
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 422 SLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREA 501 (910)
Q Consensus 422 ~L~~qle~~k~e~~~~kkk~Ee~~~e~~~~k~kl~~eleel~~~~ee~e~~~~~le~~~~~~q~Elee~~~k~e~~~~~~ 501 (910)
.-...|+.-+.++....+.++....+...........|+.. ..+...+++-.-+......+..++..+-++++. ++
T Consensus 101 kre~~Le~ke~~L~~re~eLee~~~e~~~~~~~~~~~le~~-a~lt~~eak~~l~~~~~~~~~~~~~~~~~~~~~---~~ 176 (514)
T TIGR03319 101 KKEENLEKKEKELSNKEKNLDEKEEELEELIAEQREELERI-SGLTQEEAKEILLEEVEEEARHEAAKLIKEIEE---EA 176 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH
Q ss_pred HHHHHHHHHHH
Q 002544 502 KAALEKAAIVQ 512 (910)
Q Consensus 502 k~~lek~~~~~ 512 (910)
+..-++....+
T Consensus 177 ~~~a~~~a~~i 187 (514)
T TIGR03319 177 KEEADKKAKEI 187 (514)
T ss_pred HHHHHHHHHHH
No 460
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=26.05 E-value=8.8e+02 Score=26.38 Aligned_cols=186 Identities=14% Similarity=0.146 Sum_probs=0.0
Q ss_pred ccCCCcchHHHHHHHHHHHHHhhhccCCCChHHHHHHHHhHhhhh--HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 002544 292 CHSSDASIDNVVKVLDGLISEYETSCHGPGKWQKLATFLQQSSEG--PILDLVKRLIDQIGSERSSLMLKYRSIEDNMKL 369 (910)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~Y~~~~~gp~k~~~l~~fl~~~~~~--~il~~~~rl~~~~eke~~~L~~e~~~le~e~e~ 369 (910)
|.+.|+-...+++...-+.......+..+.......--+...+.+ ..-+++-.++..-..-..-|..+..--+.-...
T Consensus 74 Y~ADGyAVkELLKia~lLy~A~~~~~~~e~~~~~~~~~l~~k~~dlk~~R~Laseit~~GA~LydlL~kE~~lr~~R~~a 153 (267)
T PF10234_consen 74 YQADGYAVKELLKIASLLYSAMKSAPSDEEDDSLFKFDLSSKIQDLKAARQLASEITQRGASLYDLLGKEVELREERQRA 153 (267)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHhCCCccccccchhhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhchHhHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 370 LKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQK 449 (910)
Q Consensus 370 l~k~lee~e~~~~e~~k~le~~i~el~~~lee~~~~~~~l~~~~~~Le~e~~~L~~qle~~k~e~~~~kkk~Ee~~~e~~ 449 (910)
+...++-.+-. +.+...|..+..+++..+..+..+...-..|+.+++.-..+|+..+.++.. +.
T Consensus 154 ~~r~~e~~~iE-----~~l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~s-----------Lq 217 (267)
T PF10234_consen 154 LARPLELNEIE-----KALKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQS-----------LQ 217 (267)
T ss_pred HcCCcCHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HH
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 450 AMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRK 493 (910)
Q Consensus 450 ~~k~kl~~eleel~~~~ee~e~~~~~le~~~~~~q~Elee~~~k 493 (910)
..+=..+.+.+.+...+..+=..+-.--+.+.=+..++++..+.
T Consensus 218 ~vRPAfmdEyEklE~EL~~lY~~Y~~kfRNl~yLe~qle~~~~~ 261 (267)
T PF10234_consen 218 SVRPAFMDEYEKLEEELQKLYEIYVEKFRNLDYLEHQLEEYNRR 261 (267)
T ss_pred hcChHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
No 461
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=25.99 E-value=4e+02 Score=25.66 Aligned_cols=78 Identities=18% Similarity=0.243 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhccCCCChHHHHHHHHhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 002544 303 VKVLDGLISEYETSCHGPGKWQKLATFLQQSSEGPILDLVKRLIDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKS 382 (910)
Q Consensus 303 ~~~~~~~~~~Y~~~~~gp~k~~~l~~fl~~~~~~~il~~~~rl~~~~eke~~~L~~e~~~le~e~e~l~k~lee~e~~~~ 382 (910)
+..+..+..-|...+.+|. =+.....+-.+--+.++...+...++|+.+++.-++++..|+..+.++...+.
T Consensus 54 L~~Ls~LK~~y~~~~~~~~--------~~~~~l~a~~~e~qsli~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~~n~ 125 (131)
T PF04859_consen 54 LRRLSELKRRYRKKQSDPS--------PQVARLAAEIQEQQSLIKTYEIVVKKLEAELRAKDSEIDRLREKLDELNRANK 125 (131)
T ss_pred HHHHHHHHHHHHcCCCCCC--------ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHH
Q 002544 383 EYLKRY 388 (910)
Q Consensus 383 e~~k~l 388 (910)
.+.+++
T Consensus 126 ~Lekrl 131 (131)
T PF04859_consen 126 SLEKRL 131 (131)
T ss_pred HhhccC
No 462
>PF15233 SYCE1: Synaptonemal complex central element protein 1
Probab=25.69 E-value=6e+02 Score=24.35 Aligned_cols=123 Identities=24% Similarity=0.262 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 568 KMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELAD 647 (910)
Q Consensus 568 ki~~le~e~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~e~~el~~~l~e~~~~~eE~e~~l~~~e~e~~~~~~~~e 647 (910)
+|+.+-..+..++.--.-....+.++..-...+.+++..|..+..++++-+.--...+--++..++..+.+..+......
T Consensus 7 ~iE~LInrInelQQaKKk~~EELgEa~~l~eaL~~ELDsL~~EkvhLeeilnkKqe~l~iLqlhcqeke~eaqrq~~~~~ 86 (134)
T PF15233_consen 7 QIEDLINRINELQQAKKKSSEELGEAQALWEALQRELDSLNGEKVHLEEILNKKQETLRILQLHCQEKESEAQRQQTLLQ 86 (134)
T ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhH
Q ss_pred --HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 002544 648 --RERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKTDL 691 (910)
Q Consensus 648 --~l~~e~~~~~~e~~e~~r~~~e~~~~ie~~~~~ie~Le~e~~~L 691 (910)
..+.+++..-.+.-+--+.+-+.-. -+++-+.|..++..+..|
T Consensus 87 eck~R~~fe~qLE~lm~qHKdLwefh~-~erLa~EI~~l~~sKEQL 131 (134)
T PF15233_consen 87 ECKLRLDFEEQLEDLMGQHKDLWEFHM-PERLAREICALESSKEQL 131 (134)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHhhHHHH
No 463
>PF07794 DUF1633: Protein of unknown function (DUF1633); InterPro: IPR012436 This family contains sequences derived from a group of hypothetical proteins expressed by Arabidopsis thaliana (Mouse-ear cress). These sequences are highly similar and the region concerned is about 100 residues long.
Probab=25.54 E-value=1.1e+03 Score=27.53 Aligned_cols=121 Identities=12% Similarity=0.138 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 349 IGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLK---RYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSK 425 (910)
Q Consensus 349 ~eke~~~L~~e~~~le~e~e~l~k~lee~e~~~~e~~k---~le~~i~el~~~lee~~~~~~~l~~~~~~Le~e~~~L~~ 425 (910)
++-|+..++..++-....+..|.+..++++.+.-++.. --+..+.+.+.++...=..+..=-+++=-...+.-.+..
T Consensus 602 me~Ei~glq~DkQ~ar~qIh~Le~~Reelsk~V~DLtssaQgakKAVhdaK~ElA~~Y~klLagiKEKwv~KKe~t~le~ 681 (790)
T PF07794_consen 602 MEMEIGGLQADKQTARNQIHRLEQRREELSKRVMDLTSSAQGAKKAVHDAKVELAAAYSKLLAGIKEKWVAKKEYTVLEG 681 (790)
T ss_pred hhhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 002544 426 TVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAE 470 (910)
Q Consensus 426 qle~~k~e~~~~kkk~Ee~~~e~~~~k~kl~~eleel~~~~ee~e 470 (910)
+-..++..+.-+..-....+. +...+.+|+.+|.++..++...+
T Consensus 682 qAaEvesNlaLidqi~kaaId-ltvEkprlqAeLdd~ea~ck~ke 725 (790)
T PF07794_consen 682 QAAEVESNLALIDQITKAAID-LTVEKPRLQAELDDLEARCKSKE 725 (790)
T ss_pred HHHHHHhhHHHHHHHHHHHHH-HHHhhhHHHhhchHHHhhhhhcc
No 464
>KOG0992 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.45 E-value=1.2e+03 Score=27.64 Aligned_cols=387 Identities=14% Similarity=0.128 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH
Q 002544 455 VCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLR----EEF 530 (910)
Q Consensus 455 l~~eleel~~~~ee~e~~~~~le~~~~~~q~Elee~~~k~e~~~~~~k~~lek~~~~~e~~~~e~q~~~~~~~----~E~ 530 (910)
...++..++..+.+..-.+..+.+....++.|- .+|+. .++.....-+....+.-...+.++....+. +.+
T Consensus 58 ~~~ql~~lr~~~~~~~~~l~~vt~~~~ql~kEK----~~~~m-~n~~~~e~~~k~~~~kdik~E~ea~~k~l~q~~~d~l 132 (613)
T KOG0992|consen 58 ESEQLCELRSQCNELTTKLSTVTQGLQQLQKEK----TRVDM-TNEILLESVRKAQTQKDIKCEEEAKIKNLQQIEIDKL 132 (613)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHhHHH----HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 531 SSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQD 610 (910)
Q Consensus 531 ~~~~~ele~ei~~~~~kl~~~e~ei~~l~~~lee~~~ki~~le~e~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~e 610 (910)
.....-++.+--+-...++....++..+...++...-.-.-+++-+-.++.--.-....-.........+++..+.+...
T Consensus 133 ~~~~~fle~Ek~d~e~~m~~~~~q~Esls~~le~~~~~~~~~~kl~ie~e~~~h~~qq~e~~l~t~~a~~e~~nrh~~er 212 (613)
T KOG0992|consen 133 KNLLSFLEQEKVDREGLMRQQTQQIESLSEELERLRPIESVAEKLRIELEQLRHSTQQEENLLTTTLAAVEEENRHLKER 212 (613)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 002544 611 KVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAE-----------AAAARKGKSEFENLAMERMAVIERVQR 679 (910)
Q Consensus 611 ~~el~~~l~e~~~~~eE~e~~l~~~e~e~~~~~~~~e~l~~e-----------~~~~~~e~~e~~r~~~e~~~~ie~~~~ 679 (910)
+..-.....+...++..- .+++.+..+-+-+++.++.++.. +.+....+..+......-..+....-.
T Consensus 213 lk~~~~s~~e~l~kl~~E-qQlq~~~~ehkllee~~~rl~~~~s~VegS~S~~~l~~ek~r~~lee~~~~e~~e~rk~v~ 291 (613)
T KOG0992|consen 213 LKIVEESRLESLGKLNSE-QQLQALIREHKLLEEHLERLHLQLSDVEGSWSGQNLALEKQRSRLEEQVAEETTEKRKAVK 291 (613)
T ss_pred HHHHHHHHHHHHHhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 680 QIESLERQKTDLTNEVNRIRESELEALSKVALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERRSRAAANAMA 759 (910)
Q Consensus 680 ~ie~Le~e~~~Le~Ele~~~~~~~~~~~~~~elE~rl~e~eee~e~l~~r~~~qr~~~i~~Le~~le~e~~~~~ea~~r~ 759 (910)
.+..+-..+..--.+++..+..+........-++.-+.++---+..- +.-......|.-+...+-.+.....+..-.+
T Consensus 292 k~~~l~q~~~~~~~eL~K~kde~~~n~~~~~lie~lq~el~~al~~c--~eeN~~~t~~n~e~~~lq~~etek~ee~tll 369 (613)
T KOG0992|consen 292 KRDDLIQSRKQVSFELEKAKDEIKQNDDKVKLIEELQDELSVALKEC--REENKIETQVNFERNKLQNEETEKKEEKTLL 369 (613)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHH--HHhhhHHHHHHHHHHHhhchHHHHHHHHHHH
Q ss_pred HHHHHH----HHHHHHHHHHHHHHHhhhhchhhhhcchhhhhhccccccccccc-cccccccccCcchhHhhhhccCCCC
Q 002544 760 ERLSLE----VQSAQAKLDEMQQELTKARLNETALGSKLRAVSHGKRARADDYE-AGVGSVQEMDTNDKVLRANKRSRST 834 (910)
Q Consensus 760 e~l~~q----l~~~k~~i~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 834 (910)
-++--. ...+...+..+.+.+...+..=.+-=-.|+.---|+|-.+.... +..+ -+..++.-++.-||-|.
T Consensus 370 a~~~dr~se~~e~teqkleelk~~f~a~q~K~a~tikeL~~El~~yrr~i~~~~s~ia~----~~~e~pqq~s~sRSsSs 445 (613)
T KOG0992|consen 370 AAADDRFSEYSELTEQKLEELKVQFTAKQEKHAETIKELEIELEEYRRAILRNASEIAQ----YEDELPQQLSLSRSSSS 445 (613)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCC----CCccchhhhhhcccccc
Q ss_pred CCCCCccCCCCCCcccccC
Q 002544 835 TSPLKYTQPEDGGSVFRGD 853 (910)
Q Consensus 835 ~~~~~~~~~~~~~~~~~~~ 853 (910)
+|----+..|+..|...|.
T Consensus 446 ~s~~tr~s~e~r~ss~ags 464 (613)
T KOG0992|consen 446 GSQETRNSQEVRDSSEAGS 464 (613)
T ss_pred cchhhchhhhhcchhhhhh
No 465
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=25.19 E-value=6.9e+02 Score=24.89 Aligned_cols=153 Identities=18% Similarity=0.180 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhhccCCCChHHHHHHHHhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 002544 300 DNVVKVLDGLISEYETSCHGPGKWQKLATFLQQSSEGPILDLVKRLIDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSER 379 (910)
Q Consensus 300 ~~~~~~~~~~~~~Y~~~~~gp~k~~~l~~fl~~~~~~~il~~~~rl~~~~eke~~~L~~e~~~le~e~e~l~k~lee~e~ 379 (910)
..+-..|.++...| ||.--.-|.-.+-..+ -+|+.+..-.....-+...|+.....+..+...-......++.
T Consensus 6 ~~Ig~EfE~lId~~-----G~e~v~~LmP~VV~vL--E~Le~~~~~n~~~~~e~~~L~~d~e~L~~q~~~ek~~r~~~e~ 78 (158)
T PF09744_consen 6 SSIGKEFERLIDRY-----GEEAVKGLMPKVVRVL--ELLESLASRNQEHEVELELLREDNEQLETQYEREKELRKQAEE 78 (158)
T ss_pred HHHHHHHHHHHHHh-----ChhHHHHHHHHHHHHH--HHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 380 YKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEI 459 (910)
Q Consensus 380 ~~~e~~k~le~~i~el~~~lee~~~~~~~l~~~~~~Le~e~~~L~~qle~~k~e~~~~kkk~Ee~~~e~~~~k~kl~~el 459 (910)
.+.+.......+..++..+++.++.....|......+......+...-..++.+......++-+.+..+.+...+..-++
T Consensus 79 ~l~~~Ed~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~~q~~rlee~e~~l~~e~~~l~er~~e~l~~~~e~ver~k~~~ 158 (158)
T PF09744_consen 79 ELLELEDQWRQERKDLQSQVEQLEEENRQLELKLKNLSDQSSRLEEREAELKKEYNRLHERERELLRKLKEHVERQKDEI 158 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 466
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=25.18 E-value=1.1e+03 Score=27.08 Aligned_cols=228 Identities=13% Similarity=0.121 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHH
Q 002544 530 FSSTLAEKEEEMKEKATKIEHA----------EQCLTTLRLELKAAESKMRSY------------------EVEISSQKL 581 (910)
Q Consensus 530 ~~~~~~ele~ei~~~~~kl~~~----------e~ei~~l~~~lee~~~ki~~l------------------e~e~~~L~~ 581 (910)
+..++..+..++.++..++... ...-..+...+..+...+..+ ......+..
T Consensus 92 ~~~kl~RL~~Ev~EL~eEl~~~~~~~~~~~~e~~~~~~l~~~~~~L~~~L~~l~l~~~lg~~~~~~~~~~~~~~~~kl~~ 171 (388)
T PF04912_consen 92 PEQKLQRLRREVEELKEELEKRKADSKESDEEKISPEELAQQLEELSKQLDSLKLEELLGEETAQDLSDPQKALSKKLLS 171 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccccccccCChhhHHHHHHHHHHHHHHhhcccccchhhhcccccchhhHHHHHHH
Q ss_pred HHHHH------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHH
Q 002544 582 ETKEL------------------------SEKLEAVNAKAQSFEREARIMEQDKVY----------------LEQKYKSE 621 (910)
Q Consensus 582 el~dL------------------------~~~le~~~~~~~~lEk~~~~Le~e~~e----------------l~~~l~e~ 621 (910)
++..+ ...--.....+..|++++..|+.-+-. +-..+..+
T Consensus 172 ~l~~~k~~~~~~~~~~~~~~ityel~~~p~~~~~~~la~~a~LE~RL~~LE~~lG~~~~~~~~l~~~~~~~~l~~~l~~L 251 (388)
T PF04912_consen 172 QLESFKSSSGAGSSPANSDHITYELYYPPEQAKSQQLARAADLEKRLARLESALGIDSDKMSSLDSDTSSSPLLPALNEL 251 (388)
T ss_pred hhhhcccccccCCCCCCCCceeeeeecCcccchhhHHHHHHHHHHHHHHHHHHhCCCccccccccccCCcchHHHHHHHH
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 002544 622 FERFEEV-QERCKVAEKEAKKATELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRE 700 (910)
Q Consensus 622 ~~~~eE~-e~~l~~~e~e~~~~~~~~e~l~~e~~~~~~e~~e~~r~~~e~~~~ie~~~~~ie~Le~e~~~Le~Ele~~~~ 700 (910)
..++.-+ ...++.++..+..+...++.+. +....-......+.++.++-.-+.....-...|=..+.|| .-|..+-.
T Consensus 252 ~~~lslL~~~~Ld~i~~rl~~L~~~~~~l~-~~~~~~~~~~~~e~KI~eLy~~l~~~~~~~~~lP~lv~RL-~tL~~lH~ 329 (388)
T PF04912_consen 252 ERQLSLLDPAKLDSIERRLKSLLSELEELA-EKRKEAKEDAEQESKIDELYEILPRWDPYAPSLPSLVERL-KTLKSLHE 329 (388)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHHHHHH-hccccccccccchhHHHHHHHHHHHHHHHhhhhhHHHHHH-HHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 701 SELEALSKVALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERRSRAAANAMAERLS 763 (910)
Q Consensus 701 ~~~~~~~~~~elE~rl~e~eee~e~l~~r~~~qr~~~i~~Le~~le~e~~~~~ea~~r~e~l~ 763 (910)
+..+....+..++..+..+...+..+ ..-+...... +...+......+..+..|+.+|+
T Consensus 330 ~a~~~~~~l~~le~~q~~l~~~l~~~-~~~L~~ve~~---~~~N~~~i~~n~~~le~Ri~~L~ 388 (388)
T PF04912_consen 330 EAAEFSQTLSELESQQSDLQSQLKKW-EELLNKVEEK---FKENMETIEKNVKKLEERIAKLQ 388 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhccC
No 467
>PF01442 Apolipoprotein: Apolipoprotein A1/A4/E domain; InterPro: IPR000074 Exchangeable apolipoproteins (apoA, apoC and apoE) have the same genomic structure and are members of a multi-gene family that probably evolved from a common ancestral gene. This entry includes the ApoA1, ApoA4 and ApoE proteins. ApoA1 and ApoA4 are part of the APOA1/C3/A4/A5 gene cluster on chromosome 11 []. Apolipoproteins function in lipid transport as structural components of lipoprotein particles, cofactors for enzymes and ligands for cell-surface receptors. In particular, apoA1 is the major protein component of high-density lipoproteins; apoA4 is thought to act primarily in intestinal lipid absorption; and apoE is a blood plasma protein that mediates the transport and uptake of cholesterol and lipid by way of its high affinity interaction with different cellular receptors, including the low-density lipoprotein (LDL) receptor. Recent findings with apoA1 and apoE suggest that the tertiary structures of these two members of the human exchangeable apolipoprotein gene family are related []. The three-dimensional structure of the LDL receptor-binding domain of apoE indicates that the protein forms an unusually elongated four-helix bundle that may be stabilised by a tightly packed hydrophobic core that includes leucine zipper-type interactions and by numerous salt bridges on the mostly charged surface. Basic amino acids important for LDL receptor binding are clustered into a surface patch on one long helix [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region; PDB: 1YA9_A 3S84_A 1NFN_A 1LE2_A 1B68_A 1BZ4_A 1OEG_A 2L7B_A 1LE4_A 1EA8_A ....
Probab=25.18 E-value=6.7e+02 Score=24.75 Aligned_cols=198 Identities=21% Similarity=0.354 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002544 387 RYDDAINDKKKLADDYTSRINNLQGE-NISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSR 465 (910)
Q Consensus 387 ~le~~i~el~~~lee~~~~~~~l~~~-~~~Le~e~~~L~~qle~~k~e~~~~kkk~Ee~~~e~~~~k~kl~~eleel~~~ 465 (910)
++.+.+..+...++++...+..+... ...+......+...| ...+..+...+....... ...+...++.+...
T Consensus 2 ~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~l~~~~~~~~~~l---~~~~~~~~~~l~~~~~~~---~~~i~~~~~~~~~~ 75 (202)
T PF01442_consen 2 KLDDRLDSLSSRTEELEERLEELSDEIADRLAEEIEALSERL---ESELEELSDRLEERLDEV---KERIEERIEELKNS 75 (202)
T ss_dssp HHHHHHHHHHHHHHHHHHCHCSCCHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 466 STAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKA 545 (910)
Q Consensus 466 ~ee~e~~~~~le~~~~~~q~Elee~~~k~e~~~~~~k~~lek~~~~~e~~~~e~q~~~~~~~~E~~~~~~ele~ei~~~~ 545 (910)
+...-..+.. .+....+++...+..........+. ..++.....+....+.+...+...+..+...+....
T Consensus 76 l~~~~~~~~~------~l~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~i~~~l~~~~~~l~~~~ 146 (202)
T PF01442_consen 76 LDSSTSELDE------SLSERAEELKERLEARAEELESRLE---EEVDELEESLESRSEELKEKIEERLEELSEELTERA 146 (202)
T ss_dssp HHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHH------HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHhhhH
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 546 TKIEH-AEQCLTTLRLELKAAESKM-RSYEVEISSQKLETKELSEKLEAVNAKAQS 599 (910)
Q Consensus 546 ~kl~~-~e~ei~~l~~~lee~~~ki-~~le~e~~~L~~el~dL~~~le~~~~~~~~ 599 (910)
..+.. +...+..+...+......+ ..+......+...+..+...+...-..+-+
T Consensus 147 ~~~~~~i~~~~~~l~~~l~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~~~l~~~~~ 202 (202)
T PF01442_consen 147 EELEAKISERLEELRESLEEKAEELKETLDQRIEELESSIDRISEDIEEALDQVIE 202 (202)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
No 468
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=25.06 E-value=5.2e+02 Score=23.41 Aligned_cols=92 Identities=17% Similarity=0.212 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Q 002544 530 FSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNA---KAQSFEREARI 606 (910)
Q Consensus 530 ~~~~~~ele~ei~~~~~kl~~~e~ei~~l~~~lee~~~ki~~le~e~~~L~~el~dL~~~le~~~~---~~~~lEk~~~~ 606 (910)
|.+...=++.++......+.-++.-.......+..+.....++.+....+...-..+...+..+.. .+..|+.-+..
T Consensus 5 f~~~~~~v~~el~~t~~d~~LLe~mN~~~~~kY~~~~~~~~~l~~~~~~l~~k~~~l~~~l~~Id~Ie~~V~~LE~~v~~ 84 (99)
T PF10046_consen 5 FSKVSKYVESELEATNEDYNLLENMNKATSLKYKKMKDIAAGLEKNLEDLNQKYEELQPYLQQIDQIEEQVTELEQTVYE 84 (99)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHH
Q 002544 607 MEQDKVYLEQKYKSE 621 (910)
Q Consensus 607 Le~e~~el~~~l~e~ 621 (910)
|+.-...|+.++..+
T Consensus 85 LD~ysk~LE~k~k~l 99 (99)
T PF10046_consen 85 LDEYSKELESKFKKL 99 (99)
T ss_pred HHHHHHHHHHHhhcC
No 469
>cd07679 F-BAR_PACSIN2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 2 (PACSIN2). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 2 or Syndapin II is expressed ubiquitously and is involved in the regulation of tubulin polymerization. It associates with Golgi membranes and forms a complex with dynamin II which is crucial in promoting vesicle formation from the trans-Golgi network. PACSIN 2 contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave su
Probab=25.06 E-value=9e+02 Score=26.16 Aligned_cols=203 Identities=17% Similarity=0.200 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCcchH-HHHHHHHHHHHHhhhcc-CCCChHHH---HHHHHhH--hhhhHHHHHHHHH
Q 002544 273 ADIRCSSAIQSMERKLRAACHSSDASID-NVVKVLDGLISEYETSC-HGPGKWQK---LATFLQQ--SSEGPILDLVKRL 345 (910)
Q Consensus 273 s~~~C~~~l~~l~~~l~~~~~~~~~~~~-~~~~~~~~~~~~Y~~~~-~gp~k~~~---l~~fl~~--~~~~~il~~~~rl 345 (910)
....|.++..=+.+|-. +. .|-+.+..+-......+ .||.-|.. +..|+.+ .+...=.++...|
T Consensus 17 G~~~C~dl~~~~~ERA~---------IE~~Yak~L~~~akkw~~~ie~gpeyGTl~~aw~~~~~Eae~~s~~H~~l~~~L 87 (258)
T cd07679 17 GHRLCNDLMNCLHERAR---------IEKVYAQQLTEWAKRWRQLVEKGPQYGTVEKAWCALMSEAEKVSELHLEVKASL 87 (258)
T ss_pred HHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHhccccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHH------------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 346 IDQIGSERSSLMLKY------------RSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGEN 413 (910)
Q Consensus 346 ~~~~eke~~~L~~e~------------~~le~e~e~l~k~lee~e~~~~e~~k~le~~i~el~~~lee~~~~~~~l~~~~ 413 (910)
.+.....+..-+.+. ..++..++..++.-...-.. ...-.......+...+....+.+.....-
T Consensus 88 ~~e~~e~ir~wQKe~~hk~~~~~~Ke~k~~e~~f~KaQKpw~k~~kk----v~~aKk~Y~~aCk~e~~A~~~~~~~~~d~ 163 (258)
T cd07679 88 MNEDFEKIKNWQKEAFHKQMMGGFKETKEAEDGFRKAQKPWAKKLKE----VEAAKKAYHTACKEEKLATSREANSKADP 163 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHhHHHHHHHHHhhhHHHHHHH----HHHHHHHHHHHHHhHHHHHHHHHhcccCC
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH-HHHHHHHHHHHHHHHHH
Q 002544 414 ISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEA-RLAAAREQALSAQEEVE 488 (910)
Q Consensus 414 ~~Le~e~~~L~~qle~~k~e~~~~kkk~Ee~~~e~~~~k~kl~~eleel~~~~ee~e~-~~~~le~~~~~~q~Ele 488 (910)
........-+...++.++++++..+.+|+..+.++.........+....=..+.+.|. ++.-+...+-.+..-++
T Consensus 164 ~~~~~q~~K~~~k~~k~~~~~~k~~~~Y~~~l~~L~~~~~~y~e~m~~~fe~~Q~~E~eRi~F~K~~l~~~~~~l~ 239 (258)
T cd07679 164 ALNPEQLKKLQDKVEKCKQDVLKTKEKYEKSLKELDQTTPQYMENMEQVFEQCQQFEEKRLRFFREVLLEVQKHLD 239 (258)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
No 470
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=25.01 E-value=6.2e+02 Score=24.25 Aligned_cols=100 Identities=14% Similarity=0.222 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Q 002544 421 SSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAA--REQALSAQEEVEEWKRKYGVAV 498 (910)
Q Consensus 421 ~~L~~qle~~k~e~~~~kkk~Ee~~~e~~~~k~kl~~eleel~~~~ee~e~~~~~l--e~~~~~~q~Elee~~~k~e~~~ 498 (910)
.++..++..+.++...+..+-+...+........+..++.++.......+++...+ .....-...++..+-.+|+...
T Consensus 23 ~~v~~~l~~LEae~q~L~~kE~~r~~~~k~~ae~a~~~L~~~~~~~~~i~e~~~kl~~~~~~r~yk~eYk~llk~y~~~~ 102 (126)
T PF09403_consen 23 ASVESELNQLEAEYQQLEQKEEARYNEEKQEAEAAEAELAELKELYAEIEEKIEKLKQDSKVRWYKDEYKELLKKYKDLL 102 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTTHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 002544 499 REAKAALEKAAIVQERTSKEMQQ 521 (910)
Q Consensus 499 ~~~k~~lek~~~~~e~~~~e~q~ 521 (910)
++....+......+. ..+.++.
T Consensus 103 ~~L~k~I~~~e~iI~-~fe~i~~ 124 (126)
T PF09403_consen 103 NKLDKEIAEQEQIID-NFEKIQS 124 (126)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HHHHHHh
No 471
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=24.69 E-value=5.8e+02 Score=23.81 Aligned_cols=106 Identities=12% Similarity=0.158 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 503 AALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLE 582 (910)
Q Consensus 503 ~~lek~~~~~e~~~~e~q~~~~~~~~E~~~~~~ele~ei~~~~~kl~~~e~ei~~l~~~lee~~~ki~~le~e~~~L~~e 582 (910)
..-.+....+...+.............+......+...-..+...+.....-+.+-......+..++..-.+.+.....+
T Consensus 3 i~kkre~~~~~~~l~~kr~e~~~~~~~~~~~e~~L~~~e~~l~~~~~~f~~flken~~k~~rA~k~a~~e~k~~~~k~~e 82 (126)
T PF13863_consen 3 IEKKREMFLVQLALDTKREEIERREEQLKQREEELEKKEQELEEDVIKFDKFLKENEAKRERAEKRAEEEKKKKEEKEAE 82 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 583 TKELSEKLEAVNAKAQSFEREARIME 608 (910)
Q Consensus 583 l~dL~~~le~~~~~~~~lEk~~~~Le 608 (910)
|..+..++..+...+..++..+..+.
T Consensus 83 i~~l~~~l~~l~~~~~k~e~~l~~~~ 108 (126)
T PF13863_consen 83 IKKLKAELEELKSEISKLEEKLEEYK 108 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
No 472
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=24.69 E-value=8.7e+02 Score=25.88 Aligned_cols=168 Identities=7% Similarity=0.090 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 605 RIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESL 684 (910)
Q Consensus 605 ~~Le~e~~el~~~l~e~~~~~eE~e~~l~~~e~e~~~~~~~~e~l~~e~~~~~~e~~e~~r~~~e~~~~ie~~~~~ie~L 684 (910)
..|+.-+..|.-++.+-+.-|.....++.+....+-.-.+.+..+-.++..+.-....+...+.=+..+..+++.-+..+
T Consensus 74 ~~LeeliNkWs~el~~Qe~vF~~q~~qvNaWDr~LI~ngekI~~Ly~e~~~vk~~qkrLdq~L~~I~sqQ~ELE~~L~~l 153 (254)
T KOG2196|consen 74 KTLEELINKWSLELEEQERVFLQQATQVNAWDRTLIENGEKISGLYNEVVKVKLDQKRLDQELEFILSQQQELEDLLDPL 153 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Q 002544 685 ERQKTDLTN--EVNRIRESELEALSKVALLEARVEEREKEIESLLESNNEQRASTVKKLEDLL--ESERRSRAAANAMAE 760 (910)
Q Consensus 685 e~e~~~Le~--Ele~~~~~~~~~~~~~~elE~rl~e~eee~e~l~~r~~~qr~~~i~~Le~~l--e~e~~~~~ea~~r~e 760 (910)
|........ =+.+...+...++.....++.++....+++..+ |.+|...- ..-.....++.+.+.
T Consensus 154 E~k~~~~~g~~~~~~~D~eR~qty~~a~nidsqLk~l~~dL~~i-----------i~~lN~~~~~~d~t~~~~qi~Kiln 222 (254)
T KOG2196|consen 154 ETKLELQSGHTYLSRADVEREQTYKMAENIDSQLKRLSEDLKQI-----------IKSLNTMSKTVDKTDPIIQIEKILN 222 (254)
T ss_pred HHHHhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHH-----------HHHHHhccCccccCCchHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 002544 761 RLSLEVQSAQAKLDEMQQELTKA 783 (910)
Q Consensus 761 ~l~~ql~~~k~~i~~l~~e~~~~ 783 (910)
+....|+.+....-.++..++++
T Consensus 223 ah~~sLqwl~d~st~~e~k~d~i 245 (254)
T KOG2196|consen 223 AHMDSLQWLDDNSTQLEKKLDKI 245 (254)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHH
No 473
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=24.63 E-value=1.9e+02 Score=28.85 Aligned_cols=39 Identities=23% Similarity=0.376 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 350 GSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSEYLKRY 388 (910)
Q Consensus 350 eke~~~L~~e~~~le~e~e~l~k~lee~e~~~~e~~k~l 388 (910)
+.|.+.|+.++.+++.++..|++.|...++...++.++|
T Consensus 28 EeE~eeLr~EL~KvEeEI~TLrqvL~aKer~~~eLKrkL 66 (162)
T PF04201_consen 28 EEEREELRSELAKVEEEIQTLRQVLAAKERHCAELKRKL 66 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
No 474
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=24.59 E-value=7.3e+02 Score=24.97 Aligned_cols=134 Identities=13% Similarity=0.238 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 002544 375 EDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSL-KNEISDWKRKYDQVLTKQKAMED 453 (910)
Q Consensus 375 ee~e~~~~e~~k~le~~i~el~~~lee~~~~~~~l~~~~~~Le~e~~~L~~qle~~-k~e~~~~kkk~Ee~~~e~~~~k~ 453 (910)
+.++.. .+-+-.-+.+--..+...--.+.++++........++.|..++... +.+....+...+..-.+.+..+.
T Consensus 19 ~QAe~i----~~~l~~~l~~~~~~~~~~~vtk~d~e~~~~~~~a~~~eLr~el~~~~k~~~~~lr~~~e~L~~eie~l~~ 94 (177)
T PF07798_consen 19 EQAEAI----MKALREVLNDSLEKVAQDLVTKSDLENQEYLFKAAIAELRSELQNSRKSEFAELRSENEKLQREIEKLRQ 94 (177)
T ss_pred HHHHHH----HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 454 QVCSEIEVLKSRST-AAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQ 512 (910)
Q Consensus 454 kl~~eleel~~~~e-e~e~~~~~le~~~~~~q~Elee~~~k~e~~~~~~k~~lek~~~~~ 512 (910)
++..++..++..+. +..-...............+.++..+.+..++..|+.++......
T Consensus 95 ~L~~ei~~l~a~~klD~n~eK~~~r~e~~~~~~ki~e~~~ki~~ei~~lr~~iE~~K~~~ 154 (177)
T PF07798_consen 95 ELREEINKLRAEVKLDLNLEKGRIREEQAKQELKIQELNNKIDTEIANLRTEIESLKWDT 154 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 475
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=24.57 E-value=5e+02 Score=23.06 Aligned_cols=61 Identities=18% Similarity=0.282 Sum_probs=0.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 355 SLMLKYRSIEDNMKLLKKQLEDSERYK------SEYLKRYDDAINDKKKLADDYTSRINNLQGENIS 415 (910)
Q Consensus 355 ~L~~e~~~le~e~e~l~k~lee~e~~~------~e~~k~le~~i~el~~~lee~~~~~~~l~~~~~~ 415 (910)
....+|+.++..+......++..+..+ .+--+.++.+...++..+.....++..|.++.+.
T Consensus 2 ~V~~eId~lEekl~~cr~~le~ve~rL~~~eLs~e~R~~lE~E~~~l~~~l~~~E~eL~~LrkENrK 68 (85)
T PF15188_consen 2 SVAKEIDGLEEKLAQCRRRLEAVESRLRRRELSPEARRSLEKELNELKEKLENNEKELKLLRKENRK 68 (85)
T ss_pred cHHHHHhhHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHHHHHHhhccHHHHHHHHHhhhh
No 476
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=24.46 E-value=5.1e+02 Score=24.04 Aligned_cols=54 Identities=26% Similarity=0.360 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 542 KEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNA 595 (910)
Q Consensus 542 ~~~~~kl~~~e~ei~~l~~~lee~~~ki~~le~e~~~L~~el~dL~~~le~~~~ 595 (910)
.++-..+..++..+..+..++.++...+..+..+...|+.+-..|...+.....
T Consensus 4 ~~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 4 KELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 477
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=24.40 E-value=1e+03 Score=26.46 Aligned_cols=163 Identities=15% Similarity=0.069 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 544 KATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFE 623 (910)
Q Consensus 544 ~~~kl~~~e~ei~~l~~~lee~~~ki~~le~e~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~e~~el~~~l~e~~~ 623 (910)
+....++..++.-+....++++..++..+... .|...+.++...+......+..+++++..++..+......+..-..
T Consensus 39 ~yQ~~EQAr~~A~~fA~~ld~~~~kl~~Ms~~--ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y~~~~~~~~~ 116 (301)
T PF06120_consen 39 FYQNAEQARQEAIEFADSLDELKEKLKEMSST--QLRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKNYQQQLAEKGI 116 (301)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHhcCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 002544 624 RFEEVQERCKVAEKEAKKATELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESEL 703 (910)
Q Consensus 624 ~~eE~e~~l~~~e~e~~~~~~~~e~l~~e~~~~~~e~~e~~r~~~e~~~~ie~~~~~ie~Le~e~~~Le~Ele~~~~~~~ 703 (910)
... ..+.+.-..+.........+..++...+..+.............+..+..+.-.+-+... .+...+...+.
T Consensus 117 ~~~---~~~~n~~~~~~~~t~~la~~t~~L~~~~~~l~q~~~k~~~~q~~l~~~~~~~~~~ir~~~---~e~~~~~~sl~ 190 (301)
T PF06120_consen 117 TEN---GYIINHLMSQADATRKLAEATRELAVAQERLEQMQSKASETQATLNDLTEQRIDLIRQKA---AEQAGAYNSLK 190 (301)
T ss_pred Ccc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Q ss_pred HHHHHHHHHHH
Q 002544 704 EALSKVALLEA 714 (910)
Q Consensus 704 ~~~~~~~elE~ 714 (910)
.......++.+
T Consensus 191 ~~~g~~~ef~~ 201 (301)
T PF06120_consen 191 GMNGAHAEFNR 201 (301)
T ss_pred HHhccHHHHHH
No 478
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=24.38 E-value=2.8e+02 Score=26.51 Aligned_cols=42 Identities=21% Similarity=0.446 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 405 RINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLT 446 (910)
Q Consensus 405 ~~~~l~~~~~~Le~e~~~L~~qle~~k~e~~~~kkk~Ee~~~ 446 (910)
++-.|++++..|..+++.|..+++.+..++.-|+.+|+....
T Consensus 75 Qk~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k~k~e~l~~ 116 (135)
T KOG4196|consen 75 QKHELEKEKAELQQQVEKLKEENSRLRRELDAYKSKYEALQN 116 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 479
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=24.35 E-value=1.1e+03 Score=26.98 Aligned_cols=301 Identities=13% Similarity=0.155 Sum_probs=0.0
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 463 KSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMK 542 (910)
Q Consensus 463 ~~~~ee~e~~~~~le~~~~~~q~Elee~~~k~e~~~~~~k~~lek~~~~~e~~~~e~q~~~~~~~~E~~~~~~ele~ei~ 542 (910)
...+..++......++-......-.. ++.+.-..........+.+.-........++...+..+..++.
T Consensus 6 ~~~~~~a~~~r~~s~~lr~es~~l~~-----------et~~~t~~~q~~~~~~L~~Ri~di~~wk~eL~~~l~~~~~Ei~ 74 (384)
T PF03148_consen 6 QQLYNNAEAQRNDSERLRQESRRLIN-----------ETDARTKWDQYDSNKRLRQRIRDIRFWKNELERELEELDEEID 74 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 543 EKATKIEHAEQCLTTLRLELKAAESKM-----------------RSYEVEISSQKLETKELSEKLEAVNAKAQSFEREAR 605 (910)
Q Consensus 543 ~~~~kl~~~e~ei~~l~~~lee~~~ki-----------------~~le~e~~~L~~el~dL~~~le~~~~~~~~lEk~~~ 605 (910)
.+...-..++..+..+..-+.-...-+ ..|-+++..+..--.-|...++.+...+..+.....
T Consensus 75 ~L~~~K~~le~aL~~~~~pl~i~~ecL~~R~~R~~~dlv~D~ve~eL~kE~~li~~~~~lL~~~l~~~~eQl~~lr~ar~ 154 (384)
T PF03148_consen 75 LLEEEKRRLEKALEALRKPLSIAQECLSLREKRPGIDLVHDEVEKELLKEVELIENIKRLLQRTLEQAEEQLRLLRAARY 154 (384)
T ss_pred HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHhCCCCcccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHH------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 606 IMEQDKVYLEQKYKSEF------------------------------------ERFEEVQERCKVAEKEAKKATELADRE 649 (910)
Q Consensus 606 ~Le~e~~el~~~l~e~~------------------------------------~~~eE~e~~l~~~e~e~~~~~~~~e~l 649 (910)
.|+..+..-...+.--. ..+..++.++.....--..+...+...
T Consensus 155 ~Le~Dl~dK~~A~~ID~~~~~L~~~S~~i~~~~~~~r~~~~~~tp~~W~~~s~~ni~~a~~e~~~S~~LR~~i~~~l~~~ 234 (384)
T PF03148_consen 155 RLEKDLSDKFEALEIDTQCLSLNNNSTNISYKPGSTRIPKNSSTPESWEEFSNENIQRAEKERQSSAQLREDIDSILEQT 234 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCccCCCcccCCcccccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 650 RAEAAAARKGKSE-FENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSKVALLEARVEEREKEIESLLE 728 (910)
Q Consensus 650 ~~e~~~~~~e~~e-~~r~~~e~~~~ie~~~~~ie~Le~e~~~Le~Ele~~~~~~~~~~~~~~elE~rl~e~eee~e~l~~ 728 (910)
...+......... +.+.+.+.......++-++.....++..++.++..+.....+...-++-.+.|+..+......-|-
T Consensus 235 ~~dl~~Q~~~vn~al~~Ri~et~~ak~~Le~ql~~~~~ei~~~e~~i~~L~~ai~~k~~~lkvaqTRL~~R~~RP~vElc 314 (384)
T PF03148_consen 235 ANDLRAQADAVNAALRKRIHETQEAKNELEWQLKKTLQEIAEMEKNIEDLEKAIRDKEGPLKVAQTRLENRTQRPNVELC 314 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHhcCCchHHH
Q ss_pred hhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 729 SNNEQR--ASTVKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKLD 774 (910)
Q Consensus 729 r~~~qr--~~~i~~Le~~le~e~~~~~ea~~r~e~l~~ql~~~k~~i~ 774 (910)
+..-+. -.+|..|...+......+.++..-+..|......+..+|.
T Consensus 315 rD~~q~~L~~Ev~~l~~~i~~L~~~L~~a~~~l~~L~~~~~~Le~di~ 362 (384)
T PF03148_consen 315 RDPPQYGLIEEVKELRESIEALQEKLDEAEASLQKLERTRLRLEEDIA 362 (384)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 480
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.27 E-value=1.4e+03 Score=28.30 Aligned_cols=257 Identities=14% Similarity=0.150 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 385 LKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVD---------SLKNEISDWKRKYDQVLTKQKAMEDQV 455 (910)
Q Consensus 385 ~k~le~~i~el~~~lee~~~~~~~l~~~~~~Le~e~~~L~~qle---------~~k~e~~~~kkk~Ee~~~e~~~~k~kl 455 (910)
...+.++...+....+-+...+...+.++.+++...+-|.+-.. ++..++.+.++.+|+...-
T Consensus 618 v~TL~~~~k~~~~~~~~~~~~i~~~q~e~~klqeq~~Al~~i~~~~fa~ID~~Sa~rqIael~~~lE~L~~t-------- 689 (1104)
T COG4913 618 VETLRETVKAMLSREDFYMIKIMRQQGEYIKLQEQANALAHIQALNFASIDLPSAQRQIAELQARLERLTHT-------- 689 (1104)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcchhhcchhhHHHHHHHHHHHHHHhcCC--------
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 002544 456 CSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKE-MQQREDVLREEFSSTL 534 (910)
Q Consensus 456 ~~eleel~~~~ee~e~~~~~le~~~~~~q~Elee~~~k~e~~~~~~k~~lek~~~~~e~~~~e-~q~~~~~~~~E~~~~~ 534 (910)
+..++-++..+.+++.+..-++++....-.|+. ..|..+.++.....+...- .+.-..+++.+..+..
T Consensus 690 ~~~~~~~~~~l~aaQT~~~vler~~~~~~~e~~-----------~~k~~lkrA~~~~~k~~si~~~~~t~~~q~~~~a~f 758 (1104)
T COG4913 690 QSDIAIAKAALDAAQTRQKVLERQYQQEVTECA-----------GLKKDLKRAAMLSRKVHSIAKQGMTGALQALGAAHF 758 (1104)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 535 AEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYL 614 (910)
Q Consensus 535 ~ele~ei~~~~~kl~~~e~ei~~l~~~lee~~~ki~~le~e~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~e~~el 614 (910)
..-.-+.-.....+.. ..--+.++.+|...+.....+..+|- ..+.+.+....-....+..+++.
T Consensus 759 ~q~a~~~h~~~vd~~~--------~~~r~~LqkrIDa~na~Lrrl~~~Ii------g~m~~~k~~~~a~~~e~~ael~~- 823 (1104)
T COG4913 759 PQVAPEQHDDIVDIER--------IEHRRQLQKRIDAVNARLRRLREEII------GRMSDAKKEDTAALSEVGAELDD- 823 (1104)
T ss_pred hhhChHhhhhhhhHHH--------HHHHHHHHHhhhhhHHHHHHHHHHHH------HHHHHHHhcchhhhhhhccCHhH-
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH--HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 615 EQKYKSEFERFEEVQERCKVAEKE-AKKATELADRERAE--AAAARKGKSEFENLAMERMAVIERVQRQIESLE 685 (910)
Q Consensus 615 ~~~l~e~~~~~eE~e~~l~~~e~e-~~~~~~~~e~l~~e--~~~~~~e~~e~~r~~~e~~~~ie~~~~~ie~Le 685 (910)
+-+.-.++..+.++ +-+...++..+-+. .+..-+-.+.+......+++.|+.++.-+...+
T Consensus 824 ----------ipey~~rL~~L~~D~Lpef~arF~~llN~~S~~~v~q~~~~L~~er~~IeERIe~IN~SL~~vd 887 (1104)
T COG4913 824 ----------IPEYLARLQTLTEDALPEFLARFQELLNRSSDDGVTQLLSHLDHERALIEERIEAINDSLRRVD 887 (1104)
T ss_pred ----------HHHHHHHHHhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
No 481
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=24.10 E-value=8.5e+02 Score=25.54 Aligned_cols=119 Identities=19% Similarity=0.146 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 444 VLTKQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQRE 523 (910)
Q Consensus 444 ~~~e~~~~k~kl~~eleel~~~~ee~e~~~~~le~~~~~~q~Elee~~~k~e~~~~~~k~~lek~~~~~e~~~~e~q~~~ 523 (910)
.+...+++.......++-+..++..++=-...-...-......++ .....+++....+...++.....-
T Consensus 98 d~~~w~~al~na~a~lehq~~R~~NLeLl~~~g~naW~~~n~~Le-----------~~~~~le~~l~~~k~~ie~vN~~R 166 (221)
T PF05700_consen 98 DVEAWKEALDNAYAQLEHQRLRLENLELLSKYGENAWLIHNEQLE-----------AMLKRLEKELAKLKKEIEEVNRER 166 (221)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 524 DVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYE 573 (910)
Q Consensus 524 ~~~~~E~~~~~~ele~ei~~~~~kl~~~e~ei~~l~~~lee~~~ki~~le 573 (910)
...+.++...+..++..+.+.-.+.-+.+..+..|..++..+..+.....
T Consensus 167 K~~Q~~~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~~~~~ 216 (221)
T PF05700_consen 167 KRRQEEAGEELRYLEQRWKELVSKNLEIEVACEELEQEIEQLKRKAAELK 216 (221)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 482
>PF01442 Apolipoprotein: Apolipoprotein A1/A4/E domain; InterPro: IPR000074 Exchangeable apolipoproteins (apoA, apoC and apoE) have the same genomic structure and are members of a multi-gene family that probably evolved from a common ancestral gene. This entry includes the ApoA1, ApoA4 and ApoE proteins. ApoA1 and ApoA4 are part of the APOA1/C3/A4/A5 gene cluster on chromosome 11 []. Apolipoproteins function in lipid transport as structural components of lipoprotein particles, cofactors for enzymes and ligands for cell-surface receptors. In particular, apoA1 is the major protein component of high-density lipoproteins; apoA4 is thought to act primarily in intestinal lipid absorption; and apoE is a blood plasma protein that mediates the transport and uptake of cholesterol and lipid by way of its high affinity interaction with different cellular receptors, including the low-density lipoprotein (LDL) receptor. Recent findings with apoA1 and apoE suggest that the tertiary structures of these two members of the human exchangeable apolipoprotein gene family are related []. The three-dimensional structure of the LDL receptor-binding domain of apoE indicates that the protein forms an unusually elongated four-helix bundle that may be stabilised by a tightly packed hydrophobic core that includes leucine zipper-type interactions and by numerous salt bridges on the mostly charged surface. Basic amino acids important for LDL receptor binding are clustered into a surface patch on one long helix [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region; PDB: 1YA9_A 3S84_A 1NFN_A 1LE2_A 1B68_A 1BZ4_A 1OEG_A 2L7B_A 1LE4_A 1EA8_A ....
Probab=23.00 E-value=7.4e+02 Score=24.45 Aligned_cols=185 Identities=17% Similarity=0.222 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH-----HHHHHHHHHHHH
Q 002544 415 SLREKSSSLSKTVDSLKNEISDWKRKYDQVL-TKQKAMEDQVCSEIEVLKSRSTAAEARLAAA-----REQALSAQEEVE 488 (910)
Q Consensus 415 ~Le~e~~~L~~qle~~k~e~~~~kkk~Ee~~-~e~~~~k~kl~~eleel~~~~ee~e~~~~~l-----e~~~~~~q~Ele 488 (910)
.|...+..+...++.+...+...-..+...+ ...+.....+...+.++...+...-..+... +.-...+..-..
T Consensus 2 ~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~i~~~~~~~~~~l~~~~~ 81 (202)
T PF01442_consen 2 KLDDRLDSLSSRTEELEERLEELSDEIADRLAEEIEALSERLESELEELSDRLEERLDEVKERIEERIEELKNSLDSSTS 81 (202)
T ss_dssp HHHHHHHHHHHHHHHHHHCHCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q 002544 489 EWKRKYGVAVREAKAALEKAAIVQERTSKE-MQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTT-LRLELKAAE 566 (910)
Q Consensus 489 e~~~k~e~~~~~~k~~lek~~~~~e~~~~e-~q~~~~~~~~E~~~~~~ele~ei~~~~~kl~~~e~ei~~-l~~~lee~~ 566 (910)
++...+..........+......+...+.. .......+..-...-...+...+......+...-..+.. +...+..+.
T Consensus 82 ~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~l~~~~~~l~~~~~~~~~~i~~~~~~l~ 161 (202)
T PF01442_consen 82 ELDESLSERAEELKERLEARAEELESRLEEEVDELEESLESRSEELKEKIEERLEELSEELTERAEELEAKISERLEELR 161 (202)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHH
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 567 SKM-RSYEVEISSQKLETKELSEKLEAVNAKAQS 599 (910)
Q Consensus 567 ~ki-~~le~e~~~L~~el~dL~~~le~~~~~~~~ 599 (910)
..+ .....-...+...+..+...+......+..
T Consensus 162 ~~l~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~~ 195 (202)
T PF01442_consen 162 ESLEEKAEELKETLDQRIEELESSIDRISEDIEE 195 (202)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 483
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=22.99 E-value=7.8e+02 Score=24.74 Aligned_cols=147 Identities=16% Similarity=0.216 Sum_probs=0.0
Q ss_pred HHHHHHhhhccCCCChHHHHHHHHhHhh-hhHHHHHHHHHHHHHHH-------------------------HHHHHHHHH
Q 002544 307 DGLISEYETSCHGPGKWQKLATFLQQSS-EGPILDLVKRLIDQIGS-------------------------ERSSLMLKY 360 (910)
Q Consensus 307 ~~~~~~Y~~~~~gp~k~~~l~~fl~~~~-~~~il~~~~rl~~~~ek-------------------------e~~~L~~e~ 360 (910)
..++-.|-..+--|--.+-...+|+... .++..+-..-+.....+ +...|..++
T Consensus 9 e~ivl~~~~eqNrP~ssq~v~~~lq~e~lgktavqk~Ld~La~~Gki~~K~YGKqKIY~a~QDqF~~~~~eel~~ld~~i 88 (201)
T KOG4603|consen 9 EGIVLRYLQEQNRPYSSQDVFGNLQREHLGKTAVQKTLDQLAQQGKIKEKMYGKQKIYFADQDQFDMVSDEELQVLDGKI 88 (201)
T ss_pred HHHHHHHHHHhcCCCchHHHHHHHHHHhccchHHHHHHHHHHHcCchhHHhccceeeEeecHHhhcCCChHHHHHHhHHH
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Q 002544 361 RSIEDNMKLLKKQLEDSERYKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKN-EISDWKR 439 (910)
Q Consensus 361 ~~le~e~e~l~k~lee~e~~~~e~~k~le~~i~el~~~lee~~~~~~~l~~~~~~Le~e~~~L~~qle~~k~-e~~~~kk 439 (910)
..++..+..+++.....+.. ++.|...+. +++.+..++.|.+.+.....++..+..-...+.- ..+...+
T Consensus 89 ~~l~ek~q~l~~t~s~veaE----ik~L~s~Lt-----~eemQe~i~~L~kev~~~~erl~~~k~g~~~vtpedk~~v~~ 159 (201)
T KOG4603|consen 89 VALTEKVQSLQQTCSYVEAE----IKELSSALT-----TEEMQEEIQELKKEVAGYRERLKNIKAGTNHVTPEDKEQVYR 159 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHhcC-----hHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 002544 440 KYDQVLTKQKAMEDQVCSEIEVL 462 (910)
Q Consensus 440 k~Ee~~~e~~~~k~kl~~eleel 462 (910)
.|+...++..+.+.-...=++.+
T Consensus 160 ~y~~~~~~wrk~krmf~ei~d~~ 182 (201)
T KOG4603|consen 160 EYQKYCKEWRKRKRMFREIIDKL 182 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
No 484
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=22.90 E-value=4.2e+02 Score=23.50 Aligned_cols=47 Identities=15% Similarity=0.222 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 398 LADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQV 444 (910)
Q Consensus 398 ~lee~~~~~~~l~~~~~~Le~e~~~L~~qle~~k~e~~~~kkk~Ee~ 444 (910)
++++++..+..|..+...+..+...+......++.+..+...+++..
T Consensus 25 kvdqLss~V~~L~~kvdql~~dv~~a~aaa~aAk~EA~RAN~RiDN~ 71 (85)
T PRK09973 25 KVNQLASNVQTLNAKIARLEQDMKALRPQIYAAKSEANRANTRLDAQ 71 (85)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
No 485
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=22.74 E-value=1.4e+03 Score=27.56 Aligned_cols=196 Identities=12% Similarity=0.106 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 560 LELKAAESKMRSYEVEISSQKLETKELSEKLEA------VNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCK 633 (910)
Q Consensus 560 ~~lee~~~ki~~le~e~~~L~~el~dL~~~le~------~~~~~~~lEk~~~~Le~e~~el~~~l~e~~~~~eE~e~~l~ 633 (910)
...-.++..+..++.++..+...+..+.....+ ...-...-...+......-..+.......+....-.....+
T Consensus 338 n~e~~~e~~~r~~e~~kd~~~~~~~~~~~~~~sl~~~~~~E~~~~de~~~~~~~~k~~~~~~~~~~~i~~~~~~~~~~~~ 417 (607)
T KOG0240|consen 338 NLELTAEEWKRKLEKKKDKNVALKEELEKLRNSLKRWRNGEEVKEDEDFSLKEEAKMSAILSEEEMSITKLKGSLEEEED 417 (607)
T ss_pred hhHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhcccCcccchhhhhHHHHHHhhhhhhhhhhhhhhcccchHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 634 VAEKEAKKATELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSKVALLE 713 (910)
Q Consensus 634 ~~e~e~~~~~~~~e~l~~e~~~~~~e~~e~~r~~~e~~~~ie~~~~~ie~Le~e~~~Le~Ele~~~~~~~~~~~~~~elE 713 (910)
..++.+..+..+.+....++........+++.++....+-+....+..+.+..+..+++.+.+....+..+....+.++-
T Consensus 418 ~~~e~~~~L~qqlD~kd~~~n~~sqL~~~lk~q~~~qee~~s~~~~~~e~~q~e~~~~Q~~~e~~~~e~~e~~~al~el~ 497 (607)
T KOG0240|consen 418 ILTERIESLYQQLDQKDDQINKQSQLMEKLKEQLLDQEELLSSTRRLYEDIQQELSEIQEENEAAKDEVKEVLTALEELA 497 (607)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 714 ARVEEREKEIESLLESNNEQR-ASTVKKLEDLLESERRSRAAANAMA 759 (910)
Q Consensus 714 ~rl~e~eee~e~l~~r~~~qr-~~~i~~Le~~le~e~~~~~ea~~r~ 759 (910)
......-++.+.. ..+- +..|.+|+.-........+++...+
T Consensus 498 ~~~~~~~~~~~~~----~~~n~~sel~sl~~~~~~~~~r~~~~~~~l 540 (607)
T KOG0240|consen 498 VNYDQKSEEKESK----LSQNLKSELQSLQEPSEHQSKRITELLSEL 540 (607)
T ss_pred HhhhHHHHHHhhh----hhhhhHHHHHhhhhcccchhHHHHHHHHHH
No 486
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=22.58 E-value=3.8e+02 Score=32.96 Aligned_cols=371 Identities=16% Similarity=0.157 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHH------HHHHHHHHHHHHHHHHHH
Q 002544 384 YLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSL-----------SKTVD------SLKNEISDWKRKYDQVLT 446 (910)
Q Consensus 384 ~~k~le~~i~el~~~lee~~~~~~~l~~~~~~Le~e~~~L-----------~~qle------~~k~e~~~~kkk~Ee~~~ 446 (910)
.++....-+.......++.......+...+..++.++..| ...|. .....+.+....+-
T Consensus 6 ~~~~~~~~~~~~~~~~ee~~~~~~~l~~~i~~~~~E~~~L~~~lg~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~---- 81 (619)
T PF03999_consen 6 VVYLEIECLNVYMIKVEEANELKARLLQSIADAEAELADLSSELGEEQEHLCRELEKEPLSLEEEKDILQLEKSMP---- 81 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHhcccccccccccchhhhccccc----
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 447 KQKAMEDQVCSEIEVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYG-VAVREAKAALEKAAIVQERTSKEMQQREDV 525 (910)
Q Consensus 447 e~~~~k~kl~~eleel~~~~ee~e~~~~~le~~~~~~q~Elee~~~k~e-~~~~~~k~~lek~~~~~e~~~~e~q~~~~~ 525 (910)
+......|...++.+..+..+--..+..+..+...+..++.+.-.... ..+...-.--......+...+..++.....
T Consensus 82 -L~~~~~~L~~~le~l~~~~~eR~~~~~~L~~~~~~l~~~Lg~~~~~~~~~~~~~~~l~S~~~l~~l~~~l~~L~~e~~~ 160 (619)
T PF03999_consen 82 -LKEQLPKLRPQLEELRKEKEERMQEFKELQEQLEQLCEELGELPLCLNPFDIDESDLPSLEELEELRQHLQRLQEEKER 160 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCccccCCCCCCCcHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 526 LREEFSSTLAEKEEEMKEKATKI--EHAEQCLTT----------LRLELKAAESKMRSYEVEISSQKLETKELSEKLEAV 593 (910)
Q Consensus 526 ~~~E~~~~~~ele~ei~~~~~kl--~~~e~ei~~----------l~~~lee~~~ki~~le~e~~~L~~el~dL~~~le~~ 593 (910)
-...+......+..-+..+.... ...+..+.. ....+..+...+..|...+......+.++...+..+
T Consensus 161 R~~~v~~l~~~I~~l~~~L~~~~~~~~~e~~l~~~~~~~~~~~Ls~~~l~~L~~~~~~L~~~k~~r~~~~~~l~~~i~~L 240 (619)
T PF03999_consen 161 RLEEVRELREEIISLMEELGIDPERTSFEKDLLSYSEDEESFCLSDENLEKLQELLQELEEEKEEREEKLQELREKIEEL 240 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcccccchhhccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH-------HHHhhHHHHH
Q 002544 594 NAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKA-TELADRERAEAAA-------ARKGKSEFEN 665 (910)
Q Consensus 594 ~~~~~~lEk~~~~Le~e~~el~~~l~e~~~~~eE~e~~l~~~e~e~~~~-~~~~e~l~~e~~~-------~~~e~~e~~r 665 (910)
=..+..-+.....+-.....+... .++.++.+++.++.-.... ...+..++.++.. ...+...+..
T Consensus 241 W~~L~~~~ee~~~F~~~~~~ls~~------~i~~l~~El~RL~~lK~~~lk~~I~~~R~ei~elWd~~~~s~eer~~F~~ 314 (619)
T PF03999_consen 241 WNRLDVPEEEREAFLEENSGLSLD------TIEALEEELERLEELKKQNLKEFIEKKRQEIEELWDKCHYSEEERQAFTP 314 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHhCCCHHHHHHHhhccCcchHH------HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 002544 666 LAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSKVALLEARVEEREKEIESLLESNNEQRASTVKKLEDLL 745 (910)
Q Consensus 666 ~~~e~~~~ie~~~~~ie~Le~e~~~Le~Ele~~~~~~~~~~~~~~elE~rl~e~eee~e~l~~r~~~qr~~~i~~Le~~l 745 (910)
-..+.-. +.-++.++.++.+|...++ ..+..-+.+.+...+=.+...++..--+- .+...| |..|
T Consensus 315 ~~~d~~~-----E~lL~~hE~Ei~~Lk~~~~-~~k~Il~~v~k~~~l~~~~~~Le~~~~D~--~Rl~~R-------Gg~L 379 (619)
T PF03999_consen 315 FYIDSYT-----EELLELHEEEIERLKEEYE-SRKPILELVEKWESLWEEMEELEESSKDP--SRLNNR-------GGHL 379 (619)
T ss_dssp -------------------------HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-C--CGG-------------H
T ss_pred Hhcccch-----HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCh--hhhccc-------ccHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 746 ESERRSRAAANAMAERLSLEVQSAQAKLDEMQQEL 780 (910)
Q Consensus 746 e~e~~~~~ea~~r~e~l~~ql~~~k~~i~~l~~e~ 780 (910)
..+.+.+..+.+.+=.+..+|...=...+.-.|.+
T Consensus 380 LkEEk~rk~i~k~lPkle~~L~~~l~~wE~e~g~p 414 (619)
T PF03999_consen 380 LKEEKERKRIQKKLPKLEEELKKKLEEWEEEHGKP 414 (619)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCe
No 487
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=22.54 E-value=8e+02 Score=24.68 Aligned_cols=111 Identities=20% Similarity=0.206 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHH
Q 002544 552 EQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSE--KLEAVNAKAQSFEREARIMEQDKVYLEQKY-----KSEFER 624 (910)
Q Consensus 552 e~ei~~l~~~lee~~~ki~~le~e~~~L~~el~dL~~--~le~~~~~~~~lEk~~~~Le~e~~el~~~l-----~e~~~~ 624 (910)
..++..|...+..+.+++.++..+......+|..|.+ .+++....+++|.+..+.....+..++.-. .+-...
T Consensus 78 ~eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~~k~g~~~vtpedk~~v 157 (201)
T KOG4603|consen 78 DEELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKNIKAGTNHVTPEDKEQV 157 (201)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 002544 625 FEEVQERCKVAEKEAKKATELADRERAEAAAARKGKSE 662 (910)
Q Consensus 625 ~eE~e~~l~~~e~e~~~~~~~~e~l~~e~~~~~~e~~e 662 (910)
..+.+.-+....+...-.++..+.+..-.....++..+
T Consensus 158 ~~~y~~~~~~wrk~krmf~ei~d~~~e~~pk~ksel~e 195 (201)
T KOG4603|consen 158 YREYQKYCKEWRKRKRMFREIIDKLLEGLPKKKSELYE 195 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHH
No 488
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=22.50 E-value=4.3e+02 Score=24.65 Aligned_cols=50 Identities=18% Similarity=0.273 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 383 EYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKN 432 (910)
Q Consensus 383 e~~k~le~~i~el~~~lee~~~~~~~l~~~~~~Le~e~~~L~~qle~~k~ 432 (910)
+....++.++..+..++..++..+..+..+-..|.-+...|.+.|+....
T Consensus 8 d~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~~~ 57 (110)
T PRK13169 8 DALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEELEA 57 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
No 489
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=22.45 E-value=9.8e+02 Score=25.68 Aligned_cols=86 Identities=14% Similarity=0.172 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------------------------
Q 002544 548 IEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLE--------------------------------------------- 582 (910)
Q Consensus 548 l~~~e~ei~~l~~~lee~~~ki~~le~e~~~L~~e--------------------------------------------- 582 (910)
++.++.++..+...+++...-+..||..+..++..
T Consensus 1 l~~lq~~l~~l~~~~~~~~~L~~kLE~DL~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~sp~ss~~~~~~~~si 80 (248)
T PF08172_consen 1 LEELQKELSELEAKLEEQKELNAKLENDLAKVQASSSASRSFNDGASMASGATRQIPNSGRSGSLSPTSSIIGGGGDSSI 80 (248)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCcccccccchhhccCccccCCCCCCccCCCCCCcccH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 583 TKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCK 633 (910)
Q Consensus 583 l~dL~~~le~~~~~~~~lEk~~~~Le~e~~el~~~l~e~~~~~eE~e~~l~ 633 (910)
|-=+..|.+..+....+||.+++.+.+.+..++..+..+...=-.+=+++.
T Consensus 81 LpIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiR 131 (248)
T PF08172_consen 81 LPIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIR 131 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 490
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=22.45 E-value=1.8e+03 Score=28.77 Aligned_cols=466 Identities=12% Similarity=0.120 Sum_probs=0.0
Q ss_pred HhhhccCCCChHHHHHHHHhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh------------HHHHHHHHHHHHHHHHH
Q 002544 312 EYETSCHGPGKWQKLATFLQQSSEGPILDLVKRLIDQIGSERSSLMLKYRS------------IEDNMKLLKKQLEDSER 379 (910)
Q Consensus 312 ~Y~~~~~gp~k~~~l~~fl~~~~~~~il~~~~rl~~~~eke~~~L~~e~~~------------le~e~e~l~k~lee~e~ 379 (910)
+|-..|+--.-.....++|-+.. +.+-+...|++-+..|.+.-++ .+.+......++++++.
T Consensus 382 EYA~RAKnIkNKPevNQkl~K~~------llKd~~~EIerLK~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~ 455 (1041)
T KOG0243|consen 382 EYAHRAKNIKNKPEVNQKLMKKT------LLKDLYEEIERLKRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEE 455 (1041)
T ss_pred HHHHHhhhccCCCccchHHHHHH------HHHHHHHHHHHHHHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Q 002544 380 YKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKY---DQVLTKQKAMEDQVC 456 (910)
Q Consensus 380 ~~~e~~k~le~~i~el~~~lee~~~~~~~l~~~~~~Le~e~~~L~~qle~~k~e~~~~kkk~---Ee~~~e~~~~k~kl~ 456 (910)
+ +..++.++.++...+-........|..++..++..+..-..++...+.+..+.+..+ +..+..+......+.
T Consensus 456 e----l~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~~~e~ii~~~~~se~~l~ 531 (1041)
T KOG0243|consen 456 E----LENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKNKELESLKEELQQAKATLKEEEEIISQQEKSEEKLV 531 (1041)
T ss_pred H----HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhhhHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Q 002544 457 SEIEVLKSRSTAAEARLAAA--------------REQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTS------ 516 (910)
Q Consensus 457 ~eleel~~~~ee~e~~~~~l--------------e~~~~~~q~Elee~~~k~e~~~~~~k~~lek~~~~~e~~~------ 516 (910)
.....++..++.....+..+ .......+.++.+.-..+-..++-..+........+....
T Consensus 532 ~~a~~l~~~~~~s~~d~s~l~~kld~~~~~~d~n~~~~~~~~~~l~~~~~~~~~~v~~~~s~~~~~l~~~~~~~~s~~s~ 611 (1041)
T KOG0243|consen 532 DRATKLRRSLEESQDDLSSLFEKLDRKDRLDDDNQEVIDDFQSQLSENLSTLHGLVASSSSQQISQLTTMLAQMESFLSA 611 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccHHHHHHHhhhhhHHHHHHHHHHhhhhhhHHHHHHHHHhhhHHHhhh
Q ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 517 -----KEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTT-LRLELKAAESKMRSYEVEISSQKLETKELSEKL 590 (910)
Q Consensus 517 -----~e~q~~~~~~~~E~~~~~~ele~ei~~~~~kl~~~e~ei~~-l~~~lee~~~ki~~le~e~~~L~~el~dL~~~l 590 (910)
..........+.-+...+..++..+..++..+...-..|.. ....+.++...+...-.....+-..+.......
T Consensus 612 ~~~~~e~~~t~~~~~r~~~~~~~e~~q~~~~~~k~~~~s~l~~i~s~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~l~~q 691 (1041)
T KOG0243|consen 612 KSKATEIMKTKISKDRDILSEVLESLQQLQEVLKKDSESCLEVINSSITSSINELESMLETIANTADDLLQNISSRLSNQ 691 (1041)
T ss_pred hccchhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 002544 591 EAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAARKGKSEFENLAMER 670 (910)
Q Consensus 591 e~~~~~~~~lEk~~~~Le~e~~el~~~l~e~~~~~eE~e~~l~~~e~e~~~~~~~~e~l~~e~~~~~~e~~e~~r~~~e~ 670 (910)
......... .+++.+.......+..-.....-++.+...+..+......+..-....-..+...-+. ........
T Consensus 692 ~~~~~l~~~--qe~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 766 (1041)
T KOG0243|consen 692 QEILSLFAN--QELQELVLSQDSAQELSELTSTFFQTLDNQAEKLTNLFSEANISLSQKLSSFQKKFES---IAEDEKQL 766 (1041)
T ss_pred hhHHHHhhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHHHHhhhHHh---hHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 002544 671 MAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSKVALLEARVEEREKEIESLLESNNEQRASTVKKLEDLLESERR 750 (910)
Q Consensus 671 ~~~ie~~~~~ie~Le~e~~~Le~Ele~~~~~~~~~~~~~~elE~rl~e~eee~e~l~~r~~~qr~~~i~~Le~~le~e~~ 750 (910)
.+.+.+. .+...++....+...+..++.........+.+.-.-.......+... .... ...-+........
T Consensus 767 v~~~~e~--~~~~~q~~~e~~~~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~k~~----~~~~---~~~~~~~~~~~~~ 837 (1041)
T KOG0243|consen 767 VEDIKEL--LSSHDQRNNELLDIALQTLRSAVNSRESNLTESVSVMQNLSDDLKTI----WQTL---GKQNENHHNEVLS 837 (1041)
T ss_pred HHHHHHH--HHHHHHHHHHHHHHHHHHHHHhhccchhHHHHhhHHHhhhhHHHHHH----HHHH---HHHHHhhhhHHHH
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhchhhhhcchhhhhhccc
Q 002544 751 SRAAANAMAERLSLE-VQSAQAKLDEMQQELTKARLNETALGSKLRAVSHGK 801 (910)
Q Consensus 751 ~~~ea~~r~e~l~~q-l~~~k~~i~~l~~e~~~~~~~~~~~~~~~~~~~~~~ 801 (910)
...+.....+..... +..+.+..+.-+...++....+..--..+.++.+|.
T Consensus 838 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~~~~~~~~l~~~~ 889 (1041)
T KOG0243|consen 838 AIEEKQQAMKSVLKELLENAESQVDECKEAIESLKSLESNHVATLDSLVRGV 889 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHhhh
No 491
>TIGR02284 conserved hypothetical protein. Members of this protein family are found mostly in the Proteobacteria, although one member is found in the the marine planctomycete Pirellula sp. strain 1. The function is unknown.
Probab=22.40 E-value=2.5e+02 Score=27.19 Aligned_cols=113 Identities=17% Similarity=0.182 Sum_probs=0.0
Q ss_pred ccCCCcCCCcHHHHHHHHHHHHHHhc-cCCCcccCCcccChHHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHH
Q 002544 122 LDQISLDRLRPEFRAGLDALTKFVFE-RTRPKQVGATVLTGPVLIGITESYLDAINNGAVPTISSSWQSVEEAECRRAYD 200 (910)
Q Consensus 122 l~~~~~~~L~~eF~~~~~~l~~~i~~-~~~pK~i~G~~ltg~~l~~l~~~yv~ain~g~vP~i~sa~~~~~~~e~~~a~~ 200 (910)
.+.+...+|.+-|......=..++-. ......+||.|-+|..+.+-+....-.|.+---|.-..++.. +|...=+
T Consensus 23 ae~v~~~~lk~~f~~~~~~~~~~~~eL~~~v~~lGg~p~~~gs~~g~lhr~w~~lks~~~~~~d~aiL~----~~e~gEd 98 (139)
T TIGR02284 23 AEEVKDPELATLFRRIAGEKSAIVSELQQVVASLGGKPEDHGSMVGSLHQFWGKIRATLTPNDDYVVLE----EAERGED 98 (139)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHcCCChHHHHH----HHHHhHH
Q ss_pred HHHHHHHhhcccC-CCCChHHHHHHHHHHHHHHHHHhhc
Q 002544 201 SATETYMSTFDRS-KPPEEVALGEAHEAAVQKALAVYNA 238 (910)
Q Consensus 201 ~A~~~Y~~~m~~~-~~~~e~~L~~~H~~~~~~Al~~F~~ 238 (910)
.++..|...+... .||+-..+.......+..+..-+..
T Consensus 99 ~~~~~y~~aL~~~~l~~~~r~~l~~q~~~i~~~~d~i~~ 137 (139)
T TIGR02284 99 RAKKAYDETLADQDTPAAARDVALRQYPGVRACHDVIRA 137 (139)
T ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHh
No 492
>PF15372 DUF4600: Domain of unknown function (DUF4600)
Probab=22.27 E-value=7.1e+02 Score=23.95 Aligned_cols=101 Identities=15% Similarity=0.177 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 542 KEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSE-KLEAVNAKAQSFEREARIMEQDKVYLEQKYKS 620 (910)
Q Consensus 542 ~~~~~kl~~~e~ei~~l~~~lee~~~ki~~le~e~~~L~~el~dL~~-~le~~~~~~~~lEk~~~~Le~e~~el~~~l~e 620 (910)
.+++.+++....-...|..++.-+..++..+...-...-..+..+.. ..+.+..-+..|++..+.|+.++.++.=+++-
T Consensus 4 nEWktRYEtQ~E~N~QLekqi~~l~~kiek~r~n~~drl~siR~ye~Ms~~~l~~llkqLEkeK~~Le~qlk~~e~rLeQ 83 (129)
T PF15372_consen 4 NEWKTRYETQLELNDQLEKQIIILREKIEKIRGNPSDRLSSIRRYEQMSVESLNQLLKQLEKEKRSLENQLKDYEWRLEQ 83 (129)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 002544 621 EFERFEEVQERCKVAEKEAKKA 642 (910)
Q Consensus 621 ~~~~~eE~e~~l~~~e~e~~~~ 642 (910)
+.+.+..+.......-.++...
T Consensus 84 EsKAyhk~ndeRr~ylaEi~~~ 105 (129)
T PF15372_consen 84 ESKAYHKANDERRQYLAEISQT 105 (129)
T ss_pred HHHHHHHHhHHHHHHHHHHHhh
No 493
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=22.25 E-value=8e+02 Score=24.80 Aligned_cols=66 Identities=18% Similarity=0.226 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 525 VLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKL 590 (910)
Q Consensus 525 ~~~~E~~~~~~ele~ei~~~~~kl~~~e~ei~~l~~~lee~~~ki~~le~e~~~L~~el~dL~~~l 590 (910)
+.+.|+......+...++....+++.--.++..--..++.+..+...+...-..|..+++....++
T Consensus 102 QVqqeL~~tf~rL~~~Vd~~~~eL~~eI~~L~~~i~~le~~~~~~k~LrnKa~~L~~eL~~F~~~y 167 (171)
T PF04799_consen 102 QVQQELSSTFARLCQQVDQTKNELEDEIKQLEKEIQRLEEIQSKSKTLRNKANWLESELERFQEQY 167 (171)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 494
>cd07671 F-BAR_PSTPIP1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 1. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 1 (PSTPIP1), also known as CD2 Binding Protein 1 (CD2BP1), is mainly expressed in hematopoietic cells. It is a binding partner of the cell surface receptor CD2 and PTP-PEST, a tyrosine phosphatase which functions in cell motility and Rac1 regulation. It also plays a role in the activation of the Wiskott-Aldrich syndrome protein (WASP), which couples actin rearrangement and T cell activation. Mutations in the gene encoding PSTPIP1 cause the autoinflammatory disorder known as PAPA (pyogenic sterile arthritis, pyoderma gangrenosum, and acne) syndrome. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain. F-BAR
Probab=22.08 E-value=9.8e+02 Score=25.52 Aligned_cols=195 Identities=12% Similarity=0.130 Sum_probs=0.0
Q ss_pred HHHHHHHhhhccCCCChHHHHHHHHhH------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 002544 306 LDGLISEYETSCHGPGKWQKLATFLQQ------SSEGPILDLVKRLIDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSER 379 (910)
Q Consensus 306 ~~~~~~~Y~~~~~gp~k~~~l~~fl~~------~~~~~il~~~~rl~~~~eke~~~L~~e~~~le~e~e~l~k~lee~e~ 379 (910)
++.+...-. .|..-..-|..|++. .....+..+.++..+.. +.-.|......+-.+++.+...
T Consensus 7 ~~~l~~r~~---~g~~~c~el~~f~keRa~iE~~Yak~L~kl~kk~~~~~--e~gTl~~a~~~~~~e~e~~a~~------ 75 (242)
T cd07671 7 YEILLQRLL---DGRKMCKDVEELLKQRAQAEERYGKELVQIARKAGGQT--EINTLKASFDQLKQQIENIGNS------ 75 (242)
T ss_pred hHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcc--cchHHHHHHHHHHHHHHHHHHH------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 380 YKSEYLKRYDDAINDKKKLADDYTSRINNLQGENISLREKSSSLSKTVDSLKNEISDWKRKYDQVLTKQKAMEDQVCSEI 459 (910)
Q Consensus 380 ~~~e~~k~le~~i~el~~~lee~~~~~~~l~~~~~~Le~e~~~L~~qle~~k~e~~~~kkk~Ee~~~e~~~~k~kl~~el 459 (910)
+..--..+...+..+..-......+...++...+-+.+.....-..++..++.|+....+.+.+...+..-.
T Consensus 76 --------H~~ia~~L~~~~~~l~~f~~~qke~rK~~e~~~eK~qk~~~~~~k~l~ksKk~Ye~~Cke~~~a~q~~~k~~ 147 (242)
T cd07671 76 --------HIQLAGMLREELKSLEEFRERQKEQRKKYEAVMERVQKSKVSLYKKTMESKKTYEQRCREADEAEQTFERSS 147 (242)
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 460 EVLKSRSTAAEARLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREE 529 (910)
Q Consensus 460 eel~~~~ee~e~~~~~le~~~~~~q~Elee~~~k~e~~~~~~k~~lek~~~~~e~~~~e~q~~~~~~~~E 529 (910)
. ......+..+...+......++..+..|...+ ..+.......+......-..+..+..+
T Consensus 148 ~------~~t~keleK~~~K~~k~~~~~~~a~~~Y~~~v----~~l~~~~~~w~~~~~~~~~~~Q~lEee 207 (242)
T cd07671 148 S------TGNPKQSEKSQNKAKQCRDAATEAERVYKQNI----EQLDKARTEWETEHILTCEVFQLQEDD 207 (242)
T ss_pred c------cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
No 495
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=22.04 E-value=2.9e+02 Score=29.86 Aligned_cols=73 Identities=12% Similarity=0.247 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 536 EKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKL----------ETKELSEKLEAVNAKAQSFEREAR 605 (910)
Q Consensus 536 ele~ei~~~~~kl~~~e~ei~~l~~~lee~~~ki~~le~e~~~L~~----------el~dL~~~le~~~~~~~~lEk~~~ 605 (910)
.+.+.|..+..++..+...|..+...+.+....+..+.+....-.. ........++....++..||.+++
T Consensus 177 ga~eki~~Lr~~y~~l~~~i~~lE~~VaeQ~~qL~~~n~~~~~~~~~~~~~~~~~~~~~~~de~I~rEeeEIreLE~k~~ 256 (259)
T PF08657_consen 177 GAREKIAALRQRYNQLSNSIAYLEAEVAEQEAQLERMNRSSSDSSSDDEESEESSEDSVDTDEDIRREEEEIRELERKKR 256 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccccccccccchhHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHH
Q 002544 606 IME 608 (910)
Q Consensus 606 ~Le 608 (910)
.|+
T Consensus 257 ~Lq 259 (259)
T PF08657_consen 257 ELQ 259 (259)
T ss_pred hcC
No 496
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=21.88 E-value=1.3e+03 Score=26.92 Aligned_cols=134 Identities=14% Similarity=0.149 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 002544 584 KELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAARKGKSEF 663 (910)
Q Consensus 584 ~dL~~~le~~~~~~~~lEk~~~~Le~e~~el~~~l~e~~~~~eE~e~~l~~~e~e~~~~~~~~e~l~~e~~~~~~e~~e~ 663 (910)
.+....+..+........+.+..-..+..+++-....-...+++++.-+.-.+.+..-...+.++++.+++.++.-+...
T Consensus 311 ~e~~~~~kka~~~~~~~~~~l~~k~k~~~e~~~~~~~kk~~~eeLESIVRiKqAEA~MFQ~kAdEARrEAE~LqrI~~aK 390 (446)
T PF07227_consen 311 EEKMRMLKKARLALETCDRELEDKAKEVAELQFERQRKKPQIEELESIVRIKQAEAKMFQLKADEARREAEGLQRIALAK 390 (446)
T ss_pred hcchhhhhhhhhhhhhhhhHHHhhhhhhhhhhHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 664 ENLAM-ERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSKVALLEARVEER 719 (910)
Q Consensus 664 ~r~~~-e~~~~ie~~~~~ie~Le~e~~~Le~Ele~~~~~~~~~~~~~~elE~rl~e~ 719 (910)
..++. +.-..+..+ .+...+.+...+-.++.-+.....+...-..-+..+++++
T Consensus 391 ~~k~EEEYas~~~kl--~l~eaee~r~~~~eelk~~e~s~~~~~~mk~rM~~~I~~L 445 (446)
T PF07227_consen 391 SEKIEEEYASRYLKL--RLNEAEEERKKKFEELKVLENSHRDYDNMKMRMQSEIQDL 445 (446)
T ss_pred HHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHhh
No 497
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=21.76 E-value=1.4e+03 Score=27.35 Aligned_cols=122 Identities=18% Similarity=0.198 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 002544 574 VEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAE- 652 (910)
Q Consensus 574 ~e~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~e~~el~~~l~e~~~~~eE~e~~l~~~e~e~~~~~~~~e~l~~e- 652 (910)
++...|-.+-..|..-...++--...|--++..|.-+..-|+..+.........++.++..++++++.++.+...++.+
T Consensus 301 rEVeNLilENsqLLetKNALNiVKNDLIakVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k~ea~~ar~~~ 380 (832)
T KOG2077|consen 301 REVENLILENSQLLETKNALNIVKNDLIAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKAEAEDARQKA 380 (832)
T ss_pred HHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 002544 653 AAAARKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVN 696 (910)
Q Consensus 653 ~~~~~~e~~e~~r~~~e~~~~ie~~~~~ie~Le~e~~~Le~Ele 696 (910)
.+.-.+.+--++|+.+.+-+ +.+.--........++.|+.-+.
T Consensus 381 ~~~e~ddiPmAqRkRFTRvE-MaRVLMeRNqYKErLMELqEavr 423 (832)
T KOG2077|consen 381 KDDEDDDIPMAQRKRFTRVE-MARVLMERNQYKERLMELQEAVR 423 (832)
T ss_pred cccccccccHHHHhhhHHHH-HHHHHHHHhHHHHHHHHHHHHHh
No 498
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=21.68 E-value=7.7e+02 Score=24.19 Aligned_cols=100 Identities=13% Similarity=0.206 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------------
Q 002544 545 ATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAV------------------------------- 593 (910)
Q Consensus 545 ~~kl~~~e~ei~~l~~~lee~~~ki~~le~e~~~L~~el~dL~~~le~~------------------------------- 593 (910)
..+++++...+.-+..+++.+...+..+...+..++.-+..+..-....
T Consensus 5 ~~~le~l~a~lq~l~~qie~L~~~i~~l~~~~~e~~~~~~tl~~lk~~~~g~E~LVpvGag~fv~~kv~~~~kviV~iGs 84 (145)
T COG1730 5 QQELEELAAQLQILQSQIESLQAQIAALNAAISELQTAIETLENLKGAGEGKEVLVPVGAGLFVKAKVKDMDKVIVSIGS 84 (145)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCceEEEEeccCceEEEEcCC
Q ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 594 --------NAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATE 644 (910)
Q Consensus 594 --------~~~~~~lEk~~~~Le~e~~el~~~l~e~~~~~eE~e~~l~~~e~e~~~~~~ 644 (910)
...+..+.+++..|+..+..++..+..+..++..+...+..+.........
T Consensus 85 g~~ae~~~~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~q~~~~~~~ 143 (145)
T COG1730 85 GYYAEKSADEAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQQKQAAAQK 143 (145)
T ss_pred ceeeeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
No 499
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=21.51 E-value=1.4e+03 Score=27.05 Aligned_cols=167 Identities=8% Similarity=0.072 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002544 541 MKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKS 620 (910)
Q Consensus 541 i~~~~~kl~~~e~ei~~l~~~lee~~~ki~~le~e~~~L~~el~dL~~~le~~~~~~~~lEk~~~~Le~e~~el~~~l~e 620 (910)
..++..++.--.+.....+..+....+++..|.+.--..-..|..+..++-++..++-.+-.++..++..=--|...-+.
T Consensus 336 F~dL~~R~K~Q~q~~~~~r~ri~~i~e~v~eLqk~~ad~~~KI~~~k~r~~~Ls~RiLRv~ikqeilr~~G~~L~~~EE~ 415 (508)
T KOG3091|consen 336 FEDLRQRLKVQDQEVKQHRIRINAIGERVTELQKHHADAVAKIEEAKNRHVELSHRILRVMIKQEILRKRGYALTPDEEE 415 (508)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCccHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-HH
Q 002544 621 EFERFEEVQERCKVAEKEAKKATELADRERAE--AAAARKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEV-NR 697 (910)
Q Consensus 621 ~~~~~eE~e~~l~~~e~e~~~~~~~~e~l~~e--~~~~~~e~~e~~r~~~e~~~~ie~~~~~ie~Le~e~~~Le~El-e~ 697 (910)
+..+++.+..++..-.+-..++.+.++-++.. .........--.....+..+.+-.-++.+..|-..+.+...++ +.
T Consensus 416 Lr~Kldtll~~ln~Pnq~k~Rl~~L~e~~r~q~~~~~~~~~~~iD~~~~~e~~e~lt~~~e~l~~Lv~Ilk~d~edi~~~ 495 (508)
T KOG3091|consen 416 LRAKLDTLLAQLNAPNQLKARLDELYEILRMQNSQLKLQESYWIDFDKLIEMKEHLTQEQEALTKLVNILKGDQEDIKHQ 495 (508)
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHHHHHhhcchhccccceeechhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q ss_pred HHHHHHHHHH
Q 002544 698 IRESELEALS 707 (910)
Q Consensus 698 ~~~~~~~~~~ 707 (910)
+.+.......
T Consensus 496 l~E~~~~~~~ 505 (508)
T KOG3091|consen 496 LIEDLEICRK 505 (508)
T ss_pred HHhhHHHHhh
No 500
>PF14931 IFT20: Intraflagellar transport complex B, subunit 20
Probab=21.25 E-value=7.1e+02 Score=23.59 Aligned_cols=104 Identities=17% Similarity=0.265 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 002544 585 ELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEKEAKKATELADRERAEAAAARKGKSEFE 664 (910)
Q Consensus 585 dL~~~le~~~~~~~~lEk~~~~Le~e~~el~~~l~e~~~~~eE~e~~l~~~e~e~~~~~~~~e~l~~e~~~~~~e~~e~~ 664 (910)
+....-.++......+-.++..+..-...+ ++.+..--+.++.+..++-.....+.............++
T Consensus 17 ~~~~~t~~Lk~ec~~F~~ki~~F~~iv~~~----------~~~~~~~A~~VE~eKlkAIG~RN~l~s~~k~R~~~~q~lq 86 (120)
T PF14931_consen 17 EKADQTQELKEECKEFVEKISEFQKIVKGF----------IEILDELAKRVENEKLKAIGARNLLKSEAKQREAQQQQLQ 86 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 002544 665 NLAMERMAVIERVQRQIESLERQKTDLTNEVNRI 698 (910)
Q Consensus 665 r~~~e~~~~ie~~~~~ie~Le~e~~~Le~Ele~~ 698 (910)
..+.+...++++++.+.+.|.+.-..-..=|+.+
T Consensus 87 ~~I~Ek~~eLERl~~E~~sL~kve~eQ~~~i~~~ 120 (120)
T PF14931_consen 87 ALIAEKKMELERLRSEYESLQKVEQEQNELIQKL 120 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Done!