Query 002544
Match_columns 910
No_of_seqs 394 out of 1073
Neff 7.7
Searched_HMMs 29240
Date Tue Mar 26 16:35:14 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002544.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1262-1266//hhsearch_pdb/002544hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1f5n_A Interferon-induced guan 1.0 1 1 569.7 44.1 402 1-407 125-543 (592)
2 4ido_A Atlastin-1; GTPase, GTP 1.0 1 1 447.9 20.8 259 1-272 173-439 (457)
3 3q5d_A Atlastin-1; G protein, 1.0 1 1 386.0 20.3 259 1-272 173-439 (447)
4 1i84_S Smooth muscle myosin he 1.0 1 1 117.9 11.4 17 162-178 432-448 (1184)
5 1c1g_A Tropomyosin; contractIl 1.0 1 1 71.1 46.9 283 474-776 2-284 (284)
6 3vkg_A Dynein heavy chain, cyt 1.0 1 1 52.8 31.2 92 531-622 2013-2104(3245)
7 3na7_A HP0958; flagellar bioge 1.0 1 1 44.9 23.8 19 811-831 201-219 (256)
8 3vkg_A Dynein heavy chain, cyt 1.0 1 1 43.0 31.6 90 539-628 2014-2103(3245)
9 2v71_A Nuclear distribution pr 1.0 1 1 41.9 23.4 173 482-666 7-183 (189)
10 2efr_A General control protein 1.0 1 1 38.4 25.4 154 472-658 1-154 (155)
No 1
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=1.00 E-value=1 Score=569.66 Aligned_cols=402 Identities=24% Similarity=0.418 Sum_probs=369.4
Q ss_pred CEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC-----CCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHH
Q ss_conf 91315999999776545466875334577532589-----8898842478981688762354323212546790579998
Q 002544 1 MFIYNQMGGIDESAIDRLSLVTQMTKHIRIRASGG-----KTTPSELGQFSPIFVWLLRDFYLDLVEDNRKITPRDYLEI 75 (910)
Q Consensus 1 ~~IYNs~g~Ide~al~~L~l~tel~~~i~~~~~~~-----~~~~~~~~~~fP~f~WlvRDf~l~l~~~G~~it~~eyLe~ 75 (910)
++|||++|.|++++++.|++++++++.+++++++. .+++.+++.|||+|+||||||++.+..+|.++||++||++
T Consensus 125 ~lv~n~~~~i~~~dl~~l~~v~e~~~~l~~k~~~~~~~~~~~~~~~~~~~fP~~~wvvRD~~l~~~~~g~~~t~~eyLe~ 204 (592)
T 1f5n_A 125 TFVYNSIGTINQQAMDQLYYVTELTHRIRSKSSPDENENEVEDSADFVSFFPDFVWTLRDFSLDLEADGQPLTPDEYLTY 204 (592)
T ss_dssp EEEEEEESCSSHHHHHTTHHHHTHHHHCBSCCC-------CCGGGGHHHHCCEEEEEEETCCCCCCCSSSCCCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCCCCEEEEEECCCCHHCCCCCCCCHHHHHHH
T ss_conf 49997898750989999999999863210235765554432223445313884499985253011017877888999999
Q ss_pred HHCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC-
Q ss_conf 5167889984563311889999824899951312689989154000028985788577999999999997324887655-
Q 002544 76 ALRPVQGSGRDIAAKNEIRDSIRALFPDRECFTLVRPLSNENELQRLDQISLDRLRPEFRAGLDALTKFVFERTRPKQV- 154 (910)
Q Consensus 76 ~L~~~~g~~~~~~~~n~~R~~i~~~F~~~~cf~l~~P~~~~~~l~~l~~~~~~~L~peF~~~~~~l~~~i~~~~~pK~i- 154 (910)
+|++.+|.++.+...|.+|.+|++|||+++||+||||+.+. .+++|+.++.++|+|+|+++++.||++||+.++||++
T Consensus 205 ~L~~~~~~~~~~~~~n~~R~~I~~~F~~~~cf~lp~P~~~~-~l~~L~~~~~~~L~peF~~~l~~l~~~i~~~~~~K~~~ 283 (592)
T 1f5n_A 205 SLKLKKGTSQKDETFNLPRLCIRKFFPKKKCFVFDRPVHRR-KLAQLEKLQDEELDPEFVQQVADFCSYIFSNSKTKTLS 283 (592)
T ss_dssp HTCCCCCCSHHHHHHHHHHHHHHHHCSCEEEEECCCCSCGG-GGGGGGGSCGGGSCHHHHHHHHHHHHHHHHHCCCCEET
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHH-HHHHHCCCCHHHCCHHHHHHHHHHHHHHHCCCCCEEEC
T ss_conf 98644588766675356899999967888389807978378-87665039812279989999999999997104441206
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC--CCCCH-HHHHHHHHHHHHH
Q ss_conf 99235718899999999999619998896423889999999999999999999633548--99985-8899999999999
Q 002544 155 GATVLTGPVLIGITESYLDAINNGAVPTISSSWQSVEEAECRRAYDSATETYMSTFDRS--KPPEE-VALGEAHEAAVQK 231 (910)
Q Consensus 155 ~G~~ltg~~l~~l~~~yv~ain~g~vP~i~s~~~~~~~~e~~~a~~~A~~~Y~~~m~~~--~~~~e-~~L~~~H~~~~~~ 231 (910)
||.+|||++|+.|++.||+|||+|.+|||+|+|.++++.+|..|++.|+.+|...|... .|... .+|...|..|..+
T Consensus 284 gg~~vtG~~L~~l~~~yv~ain~g~vP~~~s~~~a~a~~e~~~av~~A~~~Y~~~M~~~~~~P~~~~~eL~~~H~~~~~~ 363 (592)
T 1f5n_A 284 GGIQVNGPRLESLVLTYVNAISSGDLPCMENAVLALAQIENSAAVQKAIAHYEQQMGQKVQLPTESLQELLDLHRDSERE 363 (592)
T ss_dssp TTEECBHHHHHHHHHHHHHHHHHTSCCBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSSCSSHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
T ss_conf 99523599999999999999847999996549999999999999999999999998763489987799999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H-CCCCCCCHHHHHHHH
Q ss_conf 99984302678802369999999999999999999999999999999999999999996----3-158985068899999
Q 002544 232 ALAVYNAGAVGVGLARKKYEGLLQKFFRKAFEDHKKNVYMEADIRCSSAIQSMERKLRA----A-CHSSDASIDNVVKVL 306 (910)
Q Consensus 232 Al~~F~~~~~g~~~~~~~~~~~L~~~l~~~~~~~~~~n~~~s~~~C~~ll~~l~~~l~~----~-~~~~~~~~~~~~~~~ 306 (910)
|+.+|+..+|+ +..+.|+.+|...|.+.|+.|++.|..+|..+|+.+|+.+...|.. + |..|+| |..|...+
T Consensus 364 Al~~F~~~~~~--d~~~~~~~~L~~~i~~~~~~~~~~N~~~s~~~C~~ll~~l~~~l~~~i~~g~~~~p~g-~~~~~~~~ 440 (592)
T 1f5n_A 364 AIEVFIRSSFK--DVDHLFQKELAAQLEKKRDDFCKQNQEASSDRCSGLLQVIFSPLEEEVKAGIYSKPGG-YRLFVQKL 440 (592)
T ss_dssp HHHHHHHHCCC--CGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSTTH-HHHHHHHH
T ss_pred HHHHHHHHCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-HHHHHHHH
T ss_conf 99999985011--4589999999999999999999999999899999999999999999985677678983-99999999
Q ss_pred HHHHHHHHHCC-CCCCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999953136-888749999999967--523379999999898777889899987773788899999999999998999
Q 002544 307 DGLISEYETSC-HGPGKWQKLATFLQQ--SSEGPILDLVKRLIDQIGSERSSLMLKYRSIEDNMKLLKKQLEDSERYKSE 383 (910)
Q Consensus 307 ~~~~~~Y~~~~-~Gp~K~~~L~~fl~~--~~~~~il~~~~~l~~~~eke~~~L~~e~~~le~e~e~l~kqlee~e~~~~e 383 (910)
+.+...|...| +||.++.||.+||+. .+..+|+++|+.|+.+ +++++.-+.+..+++.+...+.+.....+..+.+
T Consensus 441 ~~~~~~Y~~~~~kg~~~~~vl~~fl~~~~~~~~~ilq~d~~l~~~-~k~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~ 519 (592)
T 1f5n_A 441 QDLKKKYYEEPRKGIQAEEILQTYLKSKESMTDAILQTDQTLTEK-EKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQ 519 (592)
T ss_dssp HHHHHHHHHSSCCCTTHHHHHHHHHHHTHHHHHHHHHHCSSSCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999987147764489999999998898999999988988898-9999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999879999999888999999999
Q 002544 384 YLKRYDDAINDKKKLADDYTSRIN 407 (910)
Q Consensus 384 ~~k~le~qi~el~~~lee~~~~~~ 407 (910)
..++|++++.++..++++......
T Consensus 520 ~~~~~~e~~~ql~~kme~~~~~~~ 543 (592)
T 1f5n_A 520 KERSYQEHLKQLTEKMENDRVQLL 543 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999999999
No 2
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=1.00 E-value=1 Score=447.88 Aligned_cols=259 Identities=18% Similarity=0.241 Sum_probs=236.2
Q ss_pred CEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf 91315999999776545466875334577532589889884247898168876235432321254679057999851678
Q 002544 1 MFIYNQMGGIDESAIDRLSLVTQMTKHIRIRASGGKTTPSELGQFSPIFVWLLRDFYLDLVEDNRKITPRDYLEIALRPV 80 (910)
Q Consensus 1 ~~IYNs~g~Ide~al~~L~l~tel~~~i~~~~~~~~~~~~~~~~~fP~f~WlvRDf~l~l~~~G~~it~~eyLe~~L~~~ 80 (910)
+||||++|+||++||++|++||+||++|.. ..+..|||+|+||||||+++++.+|..+|+++||+++|++.
T Consensus 173 ~~IyN~~~~i~~~~L~~L~~~tel~~~i~~---------~~~~~~Fp~f~wlvRDf~l~l~~~~g~~t~~eyLe~~L~~~ 243 (457)
T 4ido_A 173 IQVYNLSQNVQEDDLQHLQLFTEYGRLAME---------ETFLKPFQSLIFLVRDWSFPYEFSYGADGGAKFLEKRLKVS 243 (457)
T ss_dssp EEEEEEESSCCHHHHHHHHHHHHHHHHHSC---------CCSSCSEEEEEEEEETCCCTTTSCSBHHHHHHHHHHHHCCC
T ss_pred HEEECCCCCCCHHHHHHHHHHHHHHHHHHH---------HCCCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHCCC
T ss_conf 442366566788899999999999998764---------02446688269998127750002687777899999985137
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCC--CCCCCCCCCC
Q ss_conf 89984563311889999824899951312689989154000028985788577999999999997324--8876559923
Q 002544 81 QGSGRDIAAKNEIRDSIRALFPDRECFTLVRPLSNENELQRLDQISLDRLRPEFRAGLDALTKFVFER--TRPKQVGATV 158 (910)
Q Consensus 81 ~g~~~~~~~~n~~R~~i~~~F~~~~cf~l~~P~~~~~~l~~l~~~~~~~L~peF~~~~~~l~~~i~~~--~~pK~i~G~~ 158 (910)
+|.++ ..|.+|++|++|||+++||+||+|+.++..+++++ .++++|+|+|+++++.||++||+. ++||+++|.+
T Consensus 244 ~g~~~---~~~~iR~~I~~~F~~~~Cf~lp~P~~~~~~~~~~~-~~l~dL~peF~~ql~~l~~~I~~~~~l~~K~i~G~~ 319 (457)
T 4ido_A 244 GNQHE---ELQNVRKHIHSCFTNISCFLLPHPGLKVATNPNFD-GKLKEIDDEFIKNLKILIPWLLSPESLDIKEINGNK 319 (457)
T ss_dssp TTSCH---HHHHHHHHHHHHEEEEEEEECCCCCHHHHHCTTCC-CCGGGSCHHHHHHHHHHHHHHHSTTTCCCCEETTEE
T ss_pred CCCCH---HHHHHHHHHHHHCCCCCEEECCCCCHHHHHCHHHH-CCHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEE
T ss_conf 89777---88899999998677783798379861022243431-596548999999999999998351102653419976
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC----CC-CCHHHHHHHHHHHHHHHH
Q ss_conf 5718899999999999619998896423889999999999999999999633548----99-985889999999999999
Q 002544 159 LTGPVLIGITESYLDAINNGAVPTISSSWQSVEEAECRRAYDSATETYMSTFDRS----KP-PEEVALGEAHEAAVQKAL 233 (910)
Q Consensus 159 ltg~~l~~l~~~yv~ain~g~vP~i~s~~~~~~~~e~~~a~~~A~~~Y~~~m~~~----~~-~~e~~L~~~H~~~~~~Al 233 (910)
|||++|+.|+++||+|||+|++|||+|+|.++++++|.+|+++|+++|.+.|.+. .| .++.+|...|..|.++|+
T Consensus 320 vtg~~L~~lv~~Yv~ain~g~vP~~esa~~a~ae~en~~Av~~A~~~Y~~~M~~~~~~~~P~~~~~eL~~~H~~~~~~Al 399 (457)
T 4ido_A 320 ITCRGLVEYFKAYIKIYQGEELPHPKSMLQATAEANNLAAVATAKDTYNKKMEEICGGDKPFLAPNDLQTKHLQLKEESV 399 (457)
T ss_dssp CBHHHHHHHHHHHHHHHHSSSSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred ECHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 15999999999999996699999979999999999999999999999999999983788998999999999999999999
Q ss_pred HHHHCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9843026-78802369999999999999999999999999
Q 002544 234 AVYNAGA-VGVGLARKKYEGLLQKFFRKAFEDHKKNVYME 272 (910)
Q Consensus 234 ~~F~~~~-~g~~~~~~~~~~~L~~~l~~~~~~~~~~n~~~ 272 (910)
++|++.+ ||..+..+.|+.+|...|++.|+.|++.|...
T Consensus 400 ~~F~~~~~~g~~d~~~~~~~~L~~~l~~~~~~~~~~Ne~k 439 (457)
T 4ido_A 400 KLFRGVKKMGGEEFSRRYLQQLESEIDELYIQYIKHNDSK 439 (457)
T ss_dssp HHHHHSCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 9998744456477789999999999999999999983164
No 3
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=1.00 E-value=1 Score=386.05 Aligned_cols=259 Identities=18% Similarity=0.241 Sum_probs=231.3
Q ss_pred CEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf 91315999999776545466875334577532589889884247898168876235432321254679057999851678
Q 002544 1 MFIYNQMGGIDESAIDRLSLVTQMTKHIRIRASGGKTTPSELGQFSPIFVWLLRDFYLDLVEDNRKITPRDYLEIALRPV 80 (910)
Q Consensus 1 ~~IYNs~g~Ide~al~~L~l~tel~~~i~~~~~~~~~~~~~~~~~fP~f~WlvRDf~l~l~~~G~~it~~eyLe~~L~~~ 80 (910)
++|||++|+|++++|++|++|++++++|..+ .+..|||+|+||||||+++++.+|..+||++||+.+|+..
T Consensus 173 ~~IyN~~~~i~~~~l~~L~~~~e~~~~~~~~---------~~~~~fp~l~wvvRD~~~~l~~~~g~~t~~eyLe~~L~~~ 243 (447)
T 3q5d_A 173 IQVYNLSQNVQEDDLQHLQLFTEYGRLAMEE---------TFLKPFQSLIFLVRDWSFPYEFSYGADGGAKFLEKRLKVS 243 (447)
T ss_dssp EEEEEESSSCCHHHHHHHHHHHHHHHHTSCC---------CSSCSEEEEEEEEEEECCTTTSCSBHHHHHHHHHHHHHSS
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH---------HCCCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHC
T ss_conf 8887621331177899989999999999875---------0566788248997304543333578778899999998636
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCC--CCCCCCCCCC
Q ss_conf 89984563311889999824899951312689989154000028985788577999999999997324--8876559923
Q 002544 81 QGSGRDIAAKNEIRDSIRALFPDRECFTLVRPLSNENELQRLDQISLDRLRPEFRAGLDALTKFVFER--TRPKQVGATV 158 (910)
Q Consensus 81 ~g~~~~~~~~n~~R~~i~~~F~~~~cf~l~~P~~~~~~l~~l~~~~~~~L~peF~~~~~~l~~~i~~~--~~pK~i~G~~ 158 (910)
++.. ...|.+|.+|+.|||+++||+||||+.++.....++ .++++|+|+|+++++.||.+||+. ++||.++|.+
T Consensus 244 ~~~~---~~~~~~r~~i~~~F~~~~cf~lp~P~~~v~~~~~~~-~~l~~L~~~F~~~l~~l~~~i~~~~~~~~K~~~G~~ 319 (447)
T 3q5d_A 244 GNQH---EELQNVRKHIHSCFTNISCFLLPHPGLKVATNPNFD-GKLKEIDDEFIKNLKILIPWLLSPESLDIKEINGNK 319 (447)
T ss_dssp TTCS---SSSCCHHHHHHHHEEEEEEEEEECCCHHHHHCTTCC-SBGGGSCHHHHHHHHHHHHHHHSTTTCCCCEETTEE
T ss_pred CCCC---HHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHH-CCHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEE
T ss_conf 5753---778889999998677854996467551022116550-344430677899999998886172203644559976
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC----CC-CCHHHHHHHHHHHHHHHH
Q ss_conf 5718899999999999619998896423889999999999999999999633548----99-985889999999999999
Q 002544 159 LTGPVLIGITESYLDAINNGAVPTISSSWQSVEEAECRRAYDSATETYMSTFDRS----KP-PEEVALGEAHEAAVQKAL 233 (910)
Q Consensus 159 ltg~~l~~l~~~yv~ain~g~vP~i~s~~~~~~~~e~~~a~~~A~~~Y~~~m~~~----~~-~~e~~L~~~H~~~~~~Al 233 (910)
|||++|+.|++.||+|||+|.+|+++|+|.++++.+|..|++.|+..|...|... .| .+.++|...|..|..+|+
T Consensus 320 vtg~~L~~~~~~yv~ain~~~~P~~~s~~~~~a~~~~~~a~~~A~~~Y~~~m~~~~~~~~p~~~~~~L~~~h~~~~~~al 399 (447)
T 3q5d_A 320 ITCRGLVEYFKAYIKIYQGEELPHPKSMLQATAEANNLAAVATAKDTYNKKMEEICGGDKPFLAPNDLQTKHLQLKEESV 399 (447)
T ss_dssp CBHHHHHHHHHHHHHHHHHSCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCCHHHHHHHHHHHHHHHH
T ss_pred ECHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 05999999999999997279999941399999999999999999999999999973578898899999999999999999
Q ss_pred HHHHCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9843026-78802369999999999999999999999999
Q 002544 234 AVYNAGA-VGVGLARKKYEGLLQKFFRKAFEDHKKNVYME 272 (910)
Q Consensus 234 ~~F~~~~-~g~~~~~~~~~~~L~~~l~~~~~~~~~~n~~~ 272 (910)
..|+..+ ||..+..+.|+.+|...|.+.|+.|++.|...
T Consensus 400 ~~F~~~~~~g~~~~~~~~~~~L~~~l~~~~~~~~~~Ne~k 439 (447)
T 3q5d_A 400 KLFRGVKKMGGEEFSRRYLQQLESEIDELYIQYIKHNDSK 439 (447)
T ss_dssp HHHTTSCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 9999874126477899999999999999999999985055
No 4
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=1.00 E-value=1 Score=117.87 Aligned_cols=17 Identities=12% Similarity=0.110 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHCCC
Q ss_conf 88999999999996199
Q 002544 162 PVLIGITESYLDAINNG 178 (910)
Q Consensus 162 ~~l~~l~~~yv~ain~g 178 (910)
..+..|+.-.|.-||..
T Consensus 432 ~lY~~lF~wlv~~iN~~ 448 (1184)
T 1i84_S 432 AKFERLFRWILTRVNKA 448 (1184)
T ss_dssp HHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHH
T ss_conf 99999999999999886
No 5
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=1.00 E-value=1 Score=71.10 Aligned_cols=283 Identities=16% Similarity=0.169 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999899999999998899999999999999999999899999989999999987899999999999997999999
Q 002544 474 AAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQ 553 (910)
Q Consensus 474 ~~le~~~~~~q~E~ee~k~kye~~~~~~k~~le~~~~~~e~~~~e~q~~~~~~~~E~~~~~~ele~ei~~~~~kl~~~e~ 553 (910)
..+.+....+..+++ .....+......+............. +..+...+..+...+.....
T Consensus 2 ~~~~~~~~~l~~~~~-----------~~~~~~~~l~~~l~~l~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~ 62 (284)
T 1c1g_A 2 DAIKKKMQMLKLDKE-----------NALDRADEAEADKKAAEDRSKQLEDE--------LVSLQKKLKATEDELDKYSE 62 (284)
T ss_dssp HHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHH
T ss_conf 378999999887688-----------89999999999999999889888999--------99999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999899999989999999999999999999999999989999999999999999998999999999
Q 002544 554 CLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCK 633 (910)
Q Consensus 554 ei~~l~~~lee~e~ki~~le~e~~~Le~el~dL~~~le~~~~~~~~lek~~~~Le~e~~el~e~l~~~~~k~eE~e~~l~ 633 (910)
.+..+...+..+...+..+...+..+...+..+...+......+..+...+..+...+..+...+......+..+...+.
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 142 (284)
T 1c1g_A 63 ALKDAQEKLELAEKKATDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKME 142 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999898779889999999998898899889889999999999998888899999988877751066799
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999975688789999999999999999999999996999999999999999999999999
Q 002544 634 VAEKEAKKATELADRERAEAAAARKGKSEFENLAMERMAVIERVQRQIESLERQKTDLTNEVNRIRESELEALSKVALLE 713 (910)
Q Consensus 634 ~~e~e~~~~~~~~e~l~~e~e~~q~e~~e~q~~~~e~~~~ie~~~~~ie~Le~e~~~L~~Ele~l~~~~~~~~~~~~elE 713 (910)
.+...+..+......+...+.........+...+......+..+...+..+...+..+..++..+.............++
T Consensus 143 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (284)
T 1c1g_A 143 IQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYE 222 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999888899889999988998888899899989878879999999999999999999975877888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999998539999999999999899999999999999999899999999999999
Q 002544 714 ARVEEREKEIESLLESNNEQRASTVKKLEDLLESERRSRAAANAMAERLSLEVQSAQAKLDEM 776 (910)
Q Consensus 714 ~~l~e~eeeie~l~~r~~~~r~~~i~~Le~~Le~e~~~~~ea~~r~~~l~~ql~~~q~~i~~l 776 (910)
..+......+..+ ..........+..+...+............++..+..++..+...|..+
T Consensus 223 ~~l~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~ 284 (284)
T 1c1g_A 223 EEIKVLSDKLKEA-ETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHALNDMTSI 284 (284)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 9999999888989-9889999988999999999999999999988999999999999974369
No 6
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=1.00 E-value=1 Score=52.84 Aligned_cols=92 Identities=14% Similarity=0.149 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 87899999999999997999999999999999999999998999999899999999999999999999999999899999
Q 002544 531 SSTLAEKEEEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQD 610 (910)
Q Consensus 531 ~~~~~ele~ei~~~~~kl~~~e~ei~~l~~~lee~e~ki~~le~e~~~Le~el~dL~~~le~~~~~~~~lek~~~~Le~e 610 (910)
...++.++.++.....++...+.++.++...+..+..+.....+++..++.+++....++..+..-+..|..+...+...
T Consensus 2013 r~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~ 2092 (3245)
T 3vkg_A 2013 REEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQ 2092 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
T ss_conf 99999999999999999999999999999999999999999999999999999999999999999998621131329999
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999999999999
Q 002544 611 KVYLEQKYKSEF 622 (910)
Q Consensus 611 ~~el~e~l~~~~ 622 (910)
...++.++..+.
T Consensus 2093 ~~~l~~~~~~L~ 2104 (3245)
T 3vkg_A 2093 SENFNTQMSTVV 2104 (3245)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC
T ss_conf 999999997252
No 7
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=1.00 E-value=1 Score=44.85 Aligned_cols=19 Identities=26% Similarity=0.146 Sum_probs=11.2
Q ss_pred CCCCCCCCCCCHHHHHHHCCC
Q ss_conf 566544568642676421167
Q 002544 811 GVGSVQEMDTNDKVLRANKRS 831 (910)
Q Consensus 811 ~~~~~~~~~~~~~~~~~~~~~ 831 (910)
|.| =-|.+++.....-+++
T Consensus 201 C~G--C~~~lppq~~~~i~~~ 219 (256)
T 3na7_A 201 CGG--CFIRLNDKIYTEVLTS 219 (256)
T ss_dssp CTT--TCCBCCHHHHHHHHHS
T ss_pred CCC--CCEEECHHHHHHHHCC
T ss_conf 477--7824389999998779
No 8
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=1.00 E-value=1 Score=42.98 Aligned_cols=90 Identities=14% Similarity=0.143 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999799999999999999999999999899999989999999999999999999999999989999999999999
Q 002544 539 EEMKEKATKIEHAEQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKY 618 (910)
Q Consensus 539 ~ei~~~~~kl~~~e~ei~~l~~~lee~e~ki~~le~e~~~Le~el~dL~~~le~~~~~~~~lek~~~~Le~e~~el~e~l 618 (910)
.++..+..++...+.++...+..+.+++.++..+..+-.....+...+..+.+.....+...++-+..|..|...|.+..
T Consensus 2014 ~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~ 2093 (3245)
T 3vkg_A 2014 EEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQS 2093 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 99999999999999999999999999999999999999999999999999999999999999999986211313299999
Q ss_pred HHHHHHHHHH
Q ss_conf 9999989999
Q 002544 619 KSEFERFEEV 628 (910)
Q Consensus 619 ~~~~~k~eE~ 628 (910)
......+..+
T Consensus 2094 ~~l~~~~~~L 2103 (3245)
T 3vkg_A 2094 ENFNTQMSTV 2103 (3245)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHC
T ss_conf 9999999725
No 9
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=1.00 E-value=1 Score=41.88 Aligned_cols=173 Identities=17% Similarity=0.174 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 89999999999889999999999999999999989999998999999998789999999999999799999999999999
Q 002544 482 SAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHAEQCLTTLRLE 561 (910)
Q Consensus 482 ~~q~E~ee~k~kye~~~~~~k~~le~~~~~~e~~~~e~q~~~~~~~~E~~~~~~ele~ei~~~~~kl~~~e~ei~~l~~~ 561 (910)
+...++.-||..|....... ..++..+.+.+.--..+.+|+...+..++....++..++..+..++..++..
T Consensus 7 s~~ee~~ywk~~~~~~~q~~--------~~le~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K 78 (189)
T 2v71_A 7 SLKEETAYWKELSMKYKQSF--------QEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEK 78 (189)
T ss_dssp SHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 88999999999999999999--------9999999999998999999999999999988999999999899999999999
Q ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999----998999999899999999999999999999999999899999999999999999989999999999999
Q 002544 562 LKAAESK----MRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQERCKVAEK 637 (910)
Q Consensus 562 lee~e~k----i~~le~e~~~Le~el~dL~~~le~~~~~~~~lek~~~~Le~e~~el~e~l~~~~~k~eE~e~~l~~~e~ 637 (910)
+...... +..+.+++..+......+...+....-.-..+++..|.....+..++.+++.+-.+..=++.++.
T Consensus 79 ~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~alLE~El~---- 154 (189)
T 2v71_A 79 LEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELD---- 154 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
T ss_conf 9999888999999999999999999999999999999971288899989996599999898899999998987898----
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999756887899
Q 002544 638 EAKKATELADRERAEAAAARKGKSEFENL 666 (910)
Q Consensus 638 e~~~~~~~~e~l~~e~e~~q~e~~e~q~~ 666 (910)
+...+...+..++.++..+..+..-.++.
T Consensus 155 EKe~l~~~~QRLkdE~rDLk~El~v~~~~ 183 (189)
T 2v71_A 155 EKESLLVSVQRLKDEARDLRQELAVRERQ 183 (189)
T ss_dssp HHHHHHCCC--------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 89989999999898889889999878505
No 10
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=1.00 E-value=1 Score=38.41 Aligned_cols=154 Identities=20% Similarity=0.210 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999998999999999988999999999999999999998999999899999999878999999999999979999
Q 002544 472 RLAAAREQALSAQEEVEEWKRKYGVAVREAKAALEKAAIVQERTSKEMQQREDVLREEFSSTLAEKEEEMKEKATKIEHA 551 (910)
Q Consensus 472 ~~~~le~~~~~~q~E~ee~k~kye~~~~~~k~~le~~~~~~e~~~~e~q~~~~~~~~E~~~~~~ele~ei~~~~~kl~~~ 551 (910)
+...++.++..+ .++..+||+.... ...+ +...+........++..+
T Consensus 1 r~~~lE~qlkea---ae~ad~KyeEvaR----------~E~d--------------------LEraEERae~aE~k~~eL 47 (155)
T 2efr_A 1 RMKQLEDKVEEL---LSKNYHLENEVAR----------LKKL--------------------LERAEERAELSEGKSAEL 47 (155)
T ss_dssp CHHHHHHHHHHH---HHHHHHHHHHHHH----------HHHH--------------------HHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH---HHHHHHHHHHHHH----------HHHH--------------------HHHHHHHHHHHHHHHHHH
T ss_conf 977789999999---9985877899998----------9878--------------------878999999999989999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999998999999899999999999999999999999999899999999999999999989999999
Q 002544 552 EQCLTTLRLELKAAESKMRSYEVEISSQKLETKELSEKLEAVNAKAQSFEREARIMEQDKVYLEQKYKSEFERFEEVQER 631 (910)
Q Consensus 552 e~ei~~l~~~lee~e~ki~~le~e~~~Le~el~dL~~~le~~~~~~~~lek~~~~Le~e~~el~e~l~~~~~k~eE~e~~ 631 (910)
+.++..+...+..++..-......-..++.+|..|..++..+...+...++.+..|+..+..++..+.....++..+...
T Consensus 48 EeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~e 127 (155)
T 2efr_A 48 EEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEE 127 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999887721030334567899899999999999999999999899999789999989999999999999989999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999999999997
Q 002544 632 CKVAEKEAKKATELADRERAEAAAARK 658 (910)
Q Consensus 632 l~~~e~e~~~~~~~~e~l~~e~e~~q~ 658 (910)
+...-.++..+...+..+.+++..+..
T Consensus 128 Ld~tl~el~~~~~~~~~~~~~~~~~~~ 154 (155)
T 2efr_A 128 MKQLEDKVEELLSKNYHLENEVARLKK 154 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHC
T ss_conf 999999998646306888779988634
Done!