BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002545
(910 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255578257|ref|XP_002529996.1| DNA-directed RNA polymerase I subunit, putative [Ricinus communis]
gi|223530519|gb|EEF32401.1| DNA-directed RNA polymerase I subunit, putative [Ricinus communis]
Length = 1159
Score = 1488 bits (3852), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 702/925 (75%), Positives = 803/925 (86%), Gaps = 27/925 (2%)
Query: 7 ADFEPLRELVRHHIESFDYMLDEGLSEMFDH-----------------CRQAKISYTGKL 49
D+ L+EL RHHI+SFDYM++ GL M D+ CRQAKISYTGK
Sbjct: 16 GDYSALQELTRHHIDSFDYMIERGLEIMLDNIKPESSRTKHKRLLPFECRQAKISYTGKF 75
Query: 50 MADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFIL 109
ADV F+Y G V+RE++NFGQ P+MLK+R CHL G DSQ+LVS EE+AEMGGYFIL
Sbjct: 76 EADVCFEY--HGKAVIREKYNFGQLPIMLKSRLCHLYGVDSQQLVSFNEESAEMGGYFIL 133
Query: 110 NGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRK------DQSSVTLKL 163
NGLERV R +I+PK+NYPMS VR SFRDRREGYTDKAVVIRCVR+ DQSSV++KL
Sbjct: 134 NGLERVVRLLIMPKRNYPMSTVRGSFRDRREGYTDKAVVIRCVREYQSSLTDQSSVSVKL 193
Query: 164 YYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSP 223
YYL +GS RLGFW+QG+EYLLP GIVLKAL +T D EI+ LTCCYDEKY+K KGAVGS
Sbjct: 194 YYLRSGSARLGFWIQGREYLLPAGIVLKALAETTDREIYEKLTCCYDEKYEKAKGAVGSQ 253
Query: 224 LVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHL 283
LV ER KIIL EV+DLSL T+ +CL+HIGEHFQPV+DGL+ E++ VA V++DYIFVHL
Sbjct: 254 LVGERAKIILDEVRDLSLFTQSECLRHIGEHFQPVMDGLEKETFSNVAHAVLKDYIFVHL 313
Query: 284 NDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKG 343
N+ +DKFNLLIFMLQKLFSLVD TSV DNPDSLQNQE+LLPGHL+TIYLKEKLE+WLRK
Sbjct: 314 NNYDDKFNLLIFMLQKLFSLVDQTSVVDNPDSLQNQEVLLPGHLVTIYLKEKLEEWLRKA 373
Query: 344 KKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRA 403
KK++Q+EI N F+F ++ ++KKV++KNPS I ++E MLKTGRL TQTGLDLQQRA
Sbjct: 374 KKVLQEEIAKN-NNFNFLSVLDVKKVIDKNPSTTISLAVENMLKTGRLVTQTGLDLQQRA 432
Query: 404 GYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLL 463
GYTVQAERLNFLRF+SFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLL
Sbjct: 433 GYTVQAERLNFLRFLSFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLL 492
Query: 464 NHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDG 523
NHMT +CR+ SY+DS+G ++DF +R SIL VL +GM SLPKLV++GPP VLSVLLDG
Sbjct: 493 NHMTRSCRITSYFDSQGAVKDFFDIRKSILGVLTSLGMTSSLPKLVQAGPPQVLSVLLDG 552
Query: 524 RVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVR 583
RVVG IPSS++EKVV HLRRLKV+A+SVIPDDLEVGYVPLS+GGA+PGLYLFTSP +F+R
Sbjct: 553 RVVGSIPSSQVEKVVVHLRRLKVAASSVIPDDLEVGYVPLSMGGAFPGLYLFTSPSRFIR 612
Query: 584 PVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVAN 643
PV+NIS+P+ E +NIELIGPFEQVFMEIRCPDGG+GGR +AFPATHEEIHPT MLSVVAN
Sbjct: 613 PVKNISIPAGEGENIELIGPFEQVFMEIRCPDGGNGGRSDAFPATHEEIHPTDMLSVVAN 672
Query: 644 LTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGI 703
LTP+SDHNQSPRNMYQCQMAKQTM FS+Q+L+FRADQKLYHLQTPQTPIVRT++YTKY +
Sbjct: 673 LTPWSDHNQSPRNMYQCQMAKQTMAFSLQSLRFRADQKLYHLQTPQTPIVRTSSYTKYCV 732
Query: 704 DEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQ 763
DEYPTGTNAIVAVLAYTGYDMEDAMILNKSSV+RGMCHGQIYQTETIDLS++G++ DR Q
Sbjct: 733 DEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVERGMCHGQIYQTETIDLSEEGSRSDRAQ 792
Query: 764 KLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDY 823
++FRR+ KSLHSVIDSDGLPYVGQMIHP EPYCSIY++ TN+ RTN+RKGS+ V VDY
Sbjct: 793 RMFRRSNIDKSLHSVIDSDGLPYVGQMIHPNEPYCSIYNEITNTTRTNNRKGSDPVIVDY 852
Query: 824 VAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRP 883
VA+D KN K+L QK NIRFRH RNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRP
Sbjct: 853 VAIDTKNKKHL-QKVNIRFRHPRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRP 911
Query: 884 DLIINPHAFPSRMTIAMLLESVAAK 908
DLIINPHAFPSRMTIAMLLES+AAK
Sbjct: 912 DLIINPHAFPSRMTIAMLLESLAAK 936
>gi|359487166|ref|XP_002263835.2| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 [Vitis
vinifera]
Length = 1142
Score = 1484 bits (3842), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 704/918 (76%), Positives = 798/918 (86%), Gaps = 21/918 (2%)
Query: 8 DFEPLRELVRHHIESFDYMLDEGLSEMFD-----------------HCRQAKISYTGKLM 50
D+EPLREL +HHI+SFD++++ GL + CRQAKISY+GKL+
Sbjct: 7 DYEPLRELFQHHIDSFDHLVEFGLETLLMSVKPRSARTMRDALYPFECRQAKISYSGKLL 66
Query: 51 ADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILN 110
ADV FQY +RE+FN GQFP+MLK++ CHL+GAD QKLVS KEE++EMGGYFILN
Sbjct: 67 ADVCFQY--GNGVAIREKFNLGQFPIMLKSKLCHLRGADPQKLVSCKEESSEMGGYFILN 124
Query: 111 GLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGS 170
GLERV R +ILPK+NYPMSMVR+SFRDRREGYTDKAVVIRCVR+DQS+VT+KLYYL NGS
Sbjct: 125 GLERVVRLLILPKRNYPMSMVRNSFRDRREGYTDKAVVIRCVREDQSAVTVKLYYLRNGS 184
Query: 171 VRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVK 230
RLGFW+QG+EYLLPVG+VLKAL+DT D EI+ LTCCY EKY+ KGAVG+ LV ERVK
Sbjct: 185 ARLGFWIQGREYLLPVGVVLKALIDTTDHEIYESLTCCYSEKYEGGKGAVGTQLVGERVK 244
Query: 231 IILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKF 290
IIL EV+DLSL TR QCLQHIGEHFQ V+DGL++ESY VA+ V+R+YIFVHL++N DKF
Sbjct: 245 IILDEVRDLSLFTRHQCLQHIGEHFQLVMDGLENESYSIVADAVLREYIFVHLDNNYDKF 304
Query: 291 NLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDE 350
NLLIFM+QKLFSL+D TSV DNPD LQNQE+LLPGHLITIYLKEKL++WL K ++L+QDE
Sbjct: 305 NLLIFMVQKLFSLIDQTSVPDNPDVLQNQEVLLPGHLITIYLKEKLQEWLYKARRLLQDE 364
Query: 351 IENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAE 410
I N K F+F +LA++KKVM+KNPS+QI ++E MLKTGRL TQ+GLDLQQRAG TVQAE
Sbjct: 365 I-NKRKNFEFSSLAHVKKVMDKNPSRQISLAVENMLKTGRLVTQSGLDLQQRAGMTVQAE 423
Query: 411 RLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTC 470
RLNFLRF+S FRAVHRGASFAGLRTTSVRKLLPE+WGFLCPVHTPDGEPCGLLNHM STC
Sbjct: 424 RLNFLRFLSHFRAVHRGASFAGLRTTSVRKLLPEAWGFLCPVHTPDGEPCGLLNHMASTC 483
Query: 471 RVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIP 530
R+ SY+DSRGN RDF K+R SIL VLIG+GM P+LPKLV++GPP VLSV+LDGRVVG IP
Sbjct: 484 RITSYFDSRGNTRDFFKIRMSILSVLIGIGMTPALPKLVQAGPPEVLSVILDGRVVGSIP 543
Query: 531 SSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISL 590
SSE+E V HLRRLKVSA SVIPDDLEVGY+PLS+GGAYPGLYLFTSP +FVRPVRNIS+
Sbjct: 544 SSEVETAVNHLRRLKVSAISVIPDDLEVGYIPLSMGGAYPGLYLFTSPSRFVRPVRNISI 603
Query: 591 PSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDH 650
PSEE +IELIGPFEQV+MEIRCPDG DGGRRN FPATHEEIHPTGMLSVVA+LTP+SDH
Sbjct: 604 PSEEGHDIELIGPFEQVYMEIRCPDGSDGGRRNIFPATHEEIHPTGMLSVVASLTPWSDH 663
Query: 651 NQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGT 710
NQSPRNMYQCQM KQTM FS QA+ RADQKLYHLQTPQTPIVRT+ Y KY +DE+PTGT
Sbjct: 664 NQSPRNMYQCQMGKQTMAFSSQAINCRADQKLYHLQTPQTPIVRTSAYVKYSMDEFPTGT 723
Query: 711 NAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNK 770
NAIVAVLAY+GYDMEDAMILNKSSVDRG+CHGQIYQTETIDLSD+ NK DRGQ++FRR+
Sbjct: 724 NAIVAVLAYSGYDMEDAMILNKSSVDRGLCHGQIYQTETIDLSDENNKSDRGQRMFRRSN 783
Query: 771 DAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKN 830
KS +S+IDSDGLPYVGQMI+P EPYCSIY++ T+S R KGSE V VDYVA+D KN
Sbjct: 784 VDKSANSLIDSDGLPYVGQMINPNEPYCSIYNEVTSSTRATKLKGSEPVIVDYVALDAKN 843
Query: 831 SKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPH 890
K+ PQK NIRFR RNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPH
Sbjct: 844 KKH-PQKVNIRFRRPRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPH 902
Query: 891 AFPSRMTIAMLLESVAAK 908
AFPSRMTIAMLLESVAAK
Sbjct: 903 AFPSRMTIAMLLESVAAK 920
>gi|296087844|emb|CBI35100.3| unnamed protein product [Vitis vinifera]
Length = 1113
Score = 1460 bits (3779), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 689/871 (79%), Positives = 775/871 (88%), Gaps = 4/871 (0%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CRQAKISY+GKL+ADV FQY +RE+FN GQFP+MLK++ CHL+GAD QKLVS K
Sbjct: 47 CRQAKISYSGKLLADVCFQY--GNGVAIREKFNLGQFPIMLKSKLCHLRGADPQKLVSCK 104
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
EE++EMGGYFILNGLERV R +ILPK+NYPMSMVR+SFRDRREGYTDKAVVIRCVR+DQS
Sbjct: 105 EESSEMGGYFILNGLERVVRLLILPKRNYPMSMVRNSFRDRREGYTDKAVVIRCVREDQS 164
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
+VT+KLYYL NGS RLGFW+QG+EYLLPVG+VLKAL+DT D EI+ LTCCY EKY+ K
Sbjct: 165 AVTVKLYYLRNGSARLGFWIQGREYLLPVGVVLKALIDTTDHEIYESLTCCYSEKYEGGK 224
Query: 218 GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRD 277
GAVG+ LV ERVKIIL EV+DLSL TR QCLQHIGEHFQ V+DGL++ESY VA+ V+R+
Sbjct: 225 GAVGTQLVGERVKIILDEVRDLSLFTRHQCLQHIGEHFQLVMDGLENESYSIVADAVLRE 284
Query: 278 YIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLE 337
YIFVHL++N DKFNLLIFM+QKLFSL+D TSV DNPD LQNQE+LLPGHLITIYLKEKL+
Sbjct: 285 YIFVHLDNNYDKFNLLIFMVQKLFSLIDQTSVPDNPDVLQNQEVLLPGHLITIYLKEKLQ 344
Query: 338 DWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGL 397
+WL K ++L+QDEI N K F+F +LA++KKVM+KNPS+QI ++E MLKTGRL TQ+GL
Sbjct: 345 EWLYKARRLLQDEI-NKRKNFEFSSLAHVKKVMDKNPSRQISLAVENMLKTGRLVTQSGL 403
Query: 398 DLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDG 457
DLQQRAG TVQAERLNFLRF+S FRAVHRGASFAGLRTTSVRKLLPE+WGFLCPVHTPDG
Sbjct: 404 DLQQRAGMTVQAERLNFLRFLSHFRAVHRGASFAGLRTTSVRKLLPEAWGFLCPVHTPDG 463
Query: 458 EPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVL 517
EPCGLLNHM STCR+ SY+DSRGN RDF K+R SIL VLIG+GM P+LPKLV++GPP VL
Sbjct: 464 EPCGLLNHMASTCRITSYFDSRGNTRDFFKIRMSILSVLIGIGMTPALPKLVQAGPPEVL 523
Query: 518 SVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTS 577
SV+LDGRVVG IPSSE+E V HLRRLKVSA SVIPDDLEVGY+PLS+GGAYPGLYLFTS
Sbjct: 524 SVILDGRVVGSIPSSEVETAVNHLRRLKVSAISVIPDDLEVGYIPLSMGGAYPGLYLFTS 583
Query: 578 PPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIHPTGM 637
P +FVRPVRNIS+PSEE +IELIGPFEQV+MEIRCPDG DGGRRN FPATHEEIHPTGM
Sbjct: 584 PSRFVRPVRNISIPSEEGHDIELIGPFEQVYMEIRCPDGSDGGRRNIFPATHEEIHPTGM 643
Query: 638 LSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNT 697
LSVVA+LTP+SDHNQSPRNMYQCQM KQTM FS QA+ RADQKLYHLQTPQTPIVRT+
Sbjct: 644 LSVVASLTPWSDHNQSPRNMYQCQMGKQTMAFSSQAINCRADQKLYHLQTPQTPIVRTSA 703
Query: 698 YTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGN 757
Y KY +DE+PTGTNAIVAVLAY+GYDMEDAMILNKSSVDRG+CHGQIYQTETIDLSD+ N
Sbjct: 704 YVKYSMDEFPTGTNAIVAVLAYSGYDMEDAMILNKSSVDRGLCHGQIYQTETIDLSDENN 763
Query: 758 KVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSE 817
K DRGQ++FRR+ KS +S+IDSDGLPYVGQMI+P EPYCSIY++ T+S R KGSE
Sbjct: 764 KSDRGQRMFRRSNVDKSANSLIDSDGLPYVGQMINPNEPYCSIYNEVTSSTRATKLKGSE 823
Query: 818 SVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSG 877
V VDYVA+D KN K+ PQK NIRFR RNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSG
Sbjct: 824 PVIVDYVALDAKNKKH-PQKVNIRFRRPRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSG 882
Query: 878 VTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
VTGMRPDLIINPHAFPSRMTIAMLLESVAAK
Sbjct: 883 VTGMRPDLIINPHAFPSRMTIAMLLESVAAK 913
>gi|449458081|ref|XP_004146776.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2-like [Cucumis
sativus]
Length = 1173
Score = 1439 bits (3726), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 685/948 (72%), Positives = 792/948 (83%), Gaps = 47/948 (4%)
Query: 5 KSADFEPLRELVRHHIESFDYMLDEGLS---------EMFD------------------- 36
++ D+E LREL RHHIESFD+++D GL E++D
Sbjct: 7 ENEDYEALRELFRHHIESFDHLVDAGLETLMNSIKPVEIYDSFTNKKLRIWLGKPELYPP 66
Query: 37 ----------------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKT 80
CRQAKISYTGK MADV FQY + V+RE+FNFGQFP+MLK+
Sbjct: 67 QKERNLRTIREALLPYECRQAKISYTGKFMADVCFQYDEKA--VIREKFNFGQFPIMLKS 124
Query: 81 RRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRRE 140
+ CHL+G D +KLVS EEA+EMGGYF++NGLERV R +I PK+NYP SMVR+SF DRRE
Sbjct: 125 KLCHLRGLDPKKLVSYNEEASEMGGYFVMNGLERVVRLLIAPKRNYPTSMVRNSFSDRRE 184
Query: 141 GYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLE 200
GYTDKAVVIRCVR+DQSSVT+KLYYL NGS RLGFW+QGKEYLLP+G+VLKAL+DT D E
Sbjct: 185 GYTDKAVVIRCVREDQSSVTVKLYYLRNGSARLGFWVQGKEYLLPIGVVLKALIDTTDHE 244
Query: 201 IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
I+ LT CY +K+ K KGAVG+ LV ER KIIL EV+DL+L QCL HIG+HFQPV++
Sbjct: 245 IYASLTSCYSDKHGKSKGAVGTQLVGERAKIILDEVRDLALFDHRQCLDHIGQHFQPVME 304
Query: 261 GLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQE 320
GL E + VA+ V++DYIFVHL++N DKFNLLIFM QKLFSL+D TSV DNPDSLQNQ+
Sbjct: 305 GLGKEKFSTVADAVLKDYIFVHLDNNYDKFNLLIFMAQKLFSLIDQTSVPDNPDSLQNQD 364
Query: 321 ILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGT 380
+LLPG LIT+YLKEKLEDWL+K KKL++DEI N K F+F +LA++KKVM+KNPSKQ+ +
Sbjct: 365 VLLPGQLITLYLKEKLEDWLQKVKKLLEDEISNPSKNFEFCSLAHVKKVMDKNPSKQVSS 424
Query: 381 SIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRK 440
++E MLKTGRL TQTGLDLQQRAG+TVQAERLNFLRF+S FRAVHRGASFAGLRTT+VRK
Sbjct: 425 AVENMLKTGRLVTQTGLDLQQRAGFTVQAERLNFLRFVSHFRAVHRGASFAGLRTTTVRK 484
Query: 441 LLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVG 500
LLPESWGFLCPVHTPDGEPCGLLNH+TSTCR+ S+++S+G +RDF K+RTSIL VLI VG
Sbjct: 485 LLPESWGFLCPVHTPDGEPCGLLNHLTSTCRITSHFNSQGKVRDFYKIRTSILSVLIAVG 544
Query: 501 MIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGY 560
MIPSLPKLV+ G P L+VLLDGR+VG I S+E+EK+VAHLRRLKV + VIPDDLEVGY
Sbjct: 545 MIPSLPKLVQMGLPDFLNVLLDGRIVGYISSNEVEKIVAHLRRLKVLSPHVIPDDLEVGY 604
Query: 561 VPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGG 620
VPLS+ GAYPGLYLFTSP +FVRPV+N+S+ E++ NIELIGPFEQVFMEIRCPDGGDGG
Sbjct: 605 VPLSISGAYPGLYLFTSPSRFVRPVKNLSISPEDNHNIELIGPFEQVFMEIRCPDGGDGG 664
Query: 621 RRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQ 680
R++ FPATHEEIHPTGMLSVVANLTP+SDHNQSPRNMYQCQMAKQTM FS+QA+++RADQ
Sbjct: 665 RKDEFPATHEEIHPTGMLSVVANLTPWSDHNQSPRNMYQCQMAKQTMAFSLQAIRYRADQ 724
Query: 681 KLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMC 740
KLYHLQTPQTPIVRT+TYTKY IDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSV+RGM
Sbjct: 725 KLYHLQTPQTPIVRTSTYTKYNIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVERGMF 784
Query: 741 HGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSI 800
HGQIYQTETIDLSD GN+ R QK+FRR+ S+ S+ID+DGLPYVGQMI P EPYCSI
Sbjct: 785 HGQIYQTETIDLSDQGNRSSRSQKMFRRSNIDTSVRSIIDADGLPYVGQMIQPDEPYCSI 844
Query: 801 YDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQ 860
YD+ + RT KGSE+V VDYV+VD+KN KN PQK NIRFR RNP+IGDKFSSRHGQ
Sbjct: 845 YDEVAGTTRTMKLKGSEAVIVDYVSVDVKN-KNNPQKVNIRFRRPRNPMIGDKFSSRHGQ 903
Query: 861 KGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
KGVCSQLWPD+DMPF G TGMRPDLIINPHAFPSRMTIAML+ESVAAK
Sbjct: 904 KGVCSQLWPDVDMPFCGATGMRPDLIINPHAFPSRMTIAMLMESVAAK 951
>gi|356548837|ref|XP_003542805.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2-like [Glycine
max]
Length = 1175
Score = 1426 bits (3692), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 682/945 (72%), Positives = 789/945 (83%), Gaps = 47/945 (4%)
Query: 8 DFEPLRELVRHHIESFDYMLDEGLSEMFDH------------------------------ 37
DFE LREL +HHIESFDYM+D GL M H
Sbjct: 10 DFEALRELFKHHIESFDYMVDAGLDTMLGHIKPVEVFDDFTSTKLRIWLDNPVLYPPQKE 69
Query: 38 --------------CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRC 83
CRQAKISY+GK+ DV FQY D P++RE NFGQFP+ML+++ C
Sbjct: 70 RISRTMREALLPFECRQAKISYSGKITIDVCFQYNDG--PIIRENVNFGQFPIMLQSKLC 127
Query: 84 HLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYT 143
+L+GAD QKLVS KEEA+EMGGYFILNGLERV R +ILPK+NYPMSMVR+SF DRREGYT
Sbjct: 128 NLRGADPQKLVSYKEEASEMGGYFILNGLERVVRLLILPKRNYPMSMVRNSFSDRREGYT 187
Query: 144 DKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFN 203
DKAVVIRCVR DQSS++++LYYL NGS RLGFWL+G+EYLLPVGI+LKAL+DT D EI+
Sbjct: 188 DKAVVIRCVRADQSSLSVRLYYLRNGSARLGFWLRGREYLLPVGIILKALIDTTDREIYV 247
Query: 204 HLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQ 263
+LT CY+EKY+K KGAVG+ LV ER KIIL E++DLSL TRLQCL++IGEHFQPV++ L+
Sbjct: 248 NLTSCYNEKYEKGKGAVGTQLVGERAKIILDELRDLSLFTRLQCLEYIGEHFQPVMNELK 307
Query: 264 SESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILL 323
++SY VA+ V++D I VHL++N DKFNLLIFMLQKLFSL+D TSV DNPDSLQN E+LL
Sbjct: 308 NDSYPIVADAVLKDCILVHLDNNFDKFNLLIFMLQKLFSLIDQTSVPDNPDSLQNHEVLL 367
Query: 324 PGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIE 383
PGHLIT+YLKEKLEDWL+KG++L+ DEI+ KKFDF ++ +KKVM+KN KQ+ T++E
Sbjct: 368 PGHLITLYLKEKLEDWLQKGRRLLLDEIDKKSKKFDFSDIVQVKKVMDKNSPKQVSTAVE 427
Query: 384 TMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLP 443
MLKTGRL TQTGLDLQQRAGYTVQAERLNFLRF+S FRAVHRGASFAGLRTT+VRKLLP
Sbjct: 428 NMLKTGRLVTQTGLDLQQRAGYTVQAERLNFLRFLSHFRAVHRGASFAGLRTTTVRKLLP 487
Query: 444 ESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIP 503
ESWGFLCPVHTPDGEPCGLLNHMT T R+ S++DS+GNI+D+ K++ SIL VL+ VGM P
Sbjct: 488 ESWGFLCPVHTPDGEPCGLLNHMTCTSRITSFFDSQGNIKDYFKIKMSILNVLLEVGMTP 547
Query: 504 SLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPL 563
SLPK+ GPP L+VLLDG VVG I SSE+EKVVAH+R LKVS+ +VIPDD+EVGYVPL
Sbjct: 548 SLPKIFLPGPPEALTVLLDGCVVGCIASSEVEKVVAHIRELKVSSVAVIPDDMEVGYVPL 607
Query: 564 SLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRN 623
S+GGAYPGLYL TSP +FVRPVRNIS+ S+ S+NIELIGPFEQVFMEIRCPDGGDGGR++
Sbjct: 608 SMGGAYPGLYLCTSPSRFVRPVRNISIASDGSENIELIGPFEQVFMEIRCPDGGDGGRKS 667
Query: 624 AFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLY 683
+FPATHEEIHPT MLSVVANLTP+SDHNQSPRNMYQCQMAKQTM FS Q ++ RADQKLY
Sbjct: 668 SFPATHEEIHPTVMLSVVANLTPWSDHNQSPRNMYQCQMAKQTMAFSSQTIQHRADQKLY 727
Query: 684 HLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQ 743
HLQTPQTPIVRT+TYTKY IDE+PTGTNAIVAVLAYTGYDMEDAMILNKSSV+RGM HGQ
Sbjct: 728 HLQTPQTPIVRTSTYTKYNIDEFPTGTNAIVAVLAYTGYDMEDAMILNKSSVERGMFHGQ 787
Query: 744 IYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDK 803
IYQTETIDL++ G + DR ++FR++ KS IDSDGLP+VGQMI P EPYCSIY++
Sbjct: 788 IYQTETIDLTEQGGRSDRSSRMFRKSNIEKSACPSIDSDGLPHVGQMIRPDEPYCSIYNE 847
Query: 804 TTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGV 863
T+S T RKGSE+V+VDYVA D+KN K+L QK NIRFRH RNP+IGDKFSSRHGQKGV
Sbjct: 848 VTSSIHTLKRKGSEAVYVDYVAADVKNKKHL-QKVNIRFRHPRNPVIGDKFSSRHGQKGV 906
Query: 864 CSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
CSQLWPD+DMPFSG TGMRPDLIINPHAFPSRMTIAMLLESVAAK
Sbjct: 907 CSQLWPDVDMPFSGTTGMRPDLIINPHAFPSRMTIAMLLESVAAK 951
>gi|356563684|ref|XP_003550091.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2-like [Glycine
max]
Length = 1175
Score = 1406 bits (3640), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 683/945 (72%), Positives = 787/945 (83%), Gaps = 47/945 (4%)
Query: 8 DFEPLRELVRHHIESFDYMLDEGLSEMFDH------------------------------ 37
DFE LREL +HHIESFDYM D GL M H
Sbjct: 10 DFEALRELFKHHIESFDYMADAGLETMLRHIKPIEVFDDFTSTKLRIWLDNPVLYPPQKE 69
Query: 38 --------------CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRC 83
CRQAKISY GK+ DV FQY D P++RE NFGQFP+ML+++ C
Sbjct: 70 RISRTMREALLPFECRQAKISYAGKITIDVCFQYNDG--PIIRENINFGQFPIMLQSKLC 127
Query: 84 HLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYT 143
+L+GAD QKLVS +EEA+EMGGYFILNGLERV R +ILPK+N+PMSMVR+SF DRREGYT
Sbjct: 128 NLRGADPQKLVSYREEASEMGGYFILNGLERVIRLLILPKRNHPMSMVRNSFSDRREGYT 187
Query: 144 DKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFN 203
DKA+VIRCVR DQSS++++LYYL NGS RLGFWL+G+EYLLPVGI+LKAL+DT D EI+
Sbjct: 188 DKAIVIRCVRADQSSLSVRLYYLRNGSARLGFWLRGREYLLPVGIILKALIDTTDREIYV 247
Query: 204 HLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQ 263
+LT CY+EKY+K KGAVG+ LV ER KIIL E++DLSL TRLQCL++IGEHFQPVI L+
Sbjct: 248 NLTSCYNEKYEKGKGAVGTQLVGERAKIILDELRDLSLFTRLQCLEYIGEHFQPVITELK 307
Query: 264 SESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILL 323
++SY VAE V++D I VHL++N DKFNLLIFMLQKLFSL+D TSV DNPDSLQN E+LL
Sbjct: 308 NDSYPIVAEAVLKDCILVHLDNNFDKFNLLIFMLQKLFSLIDQTSVPDNPDSLQNHEVLL 367
Query: 324 PGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIE 383
PGHLIT+YLKEKLEDWL+KGK+L+ DEI+ KKFDF ++ +KKVM+KN KQ+ T++E
Sbjct: 368 PGHLITLYLKEKLEDWLQKGKRLLLDEIDKKSKKFDFSDIVQVKKVMDKNSPKQVSTAVE 427
Query: 384 TMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLP 443
MLKTGRL TQTGLDLQQRAGYTVQAERLNFLRF+S FRAVHRGASFAGLRTT+VRKLLP
Sbjct: 428 NMLKTGRLVTQTGLDLQQRAGYTVQAERLNFLRFVSHFRAVHRGASFAGLRTTTVRKLLP 487
Query: 444 ESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIP 503
ESWGFLCPVHTPDGEPCGLLNHMT T R+ S++DS+GN++D+ K++ SIL VL+ VGM P
Sbjct: 488 ESWGFLCPVHTPDGEPCGLLNHMTCTSRITSFFDSQGNVKDYFKIKMSILNVLLEVGMTP 547
Query: 504 SLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPL 563
SLPK+ GPP L+VLLDG VVG I SSE EKVVAH+R LKVS+A+VIPDD+EVGYVPL
Sbjct: 548 SLPKIFLPGPPEALTVLLDGCVVGCIASSEAEKVVAHIRELKVSSAAVIPDDMEVGYVPL 607
Query: 564 SLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRN 623
S+GGAYPGLYL TSP +FVRPVRNIS+PS S+NIE IGPFEQVFMEIRCPDGGDGGR++
Sbjct: 608 SMGGAYPGLYLCTSPSRFVRPVRNISIPSNGSENIEFIGPFEQVFMEIRCPDGGDGGRKS 667
Query: 624 AFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLY 683
+FPATHEEIHPT MLSVVANLTP+SDHNQSPRNMYQCQMAKQTM FS Q ++ RADQKLY
Sbjct: 668 SFPATHEEIHPTVMLSVVANLTPWSDHNQSPRNMYQCQMAKQTMAFSSQTIQHRADQKLY 727
Query: 684 HLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQ 743
HLQTPQTPIVRT+TYTKY IDE+PTGTNAIVAVLAYTGYDMEDAMILNKSSV+RGM HGQ
Sbjct: 728 HLQTPQTPIVRTSTYTKYNIDEFPTGTNAIVAVLAYTGYDMEDAMILNKSSVERGMFHGQ 787
Query: 744 IYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDK 803
IYQTETIDL++ G ++DR ++FR++ KS IDSDGLP+VGQMI P EPYCSIY++
Sbjct: 788 IYQTETIDLTEQGGRLDRSSRMFRKSNLEKSACPSIDSDGLPHVGQMIRPDEPYCSIYNE 847
Query: 804 TTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGV 863
T+S T RKGSE+V+VDYVAVD+KN K+L QK NIRFRH RNP+IGDKFSSRHGQKGV
Sbjct: 848 VTSSIHTLKRKGSEAVYVDYVAVDVKNKKHL-QKVNIRFRHPRNPVIGDKFSSRHGQKGV 906
Query: 864 CSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
CSQLWPD+DMPFSG TGMRPDLIINPHAFPSRMTIAMLLESVAAK
Sbjct: 907 CSQLWPDVDMPFSGNTGMRPDLIINPHAFPSRMTIAMLLESVAAK 951
>gi|297851416|ref|XP_002893589.1| hypothetical protein ARALYDRAFT_313639 [Arabidopsis lyrata subsp.
lyrata]
gi|297339431|gb|EFH69848.1| hypothetical protein ARALYDRAFT_313639 [Arabidopsis lyrata subsp.
lyrata]
Length = 1188
Score = 1369 bits (3543), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 653/953 (68%), Positives = 766/953 (80%), Gaps = 58/953 (6%)
Query: 8 DFEPLRELVRHHIESFDYMLDEGLSEMFD------------------------------- 36
D + L LV HHIESFDYM +GL MF+
Sbjct: 15 DLKELHNLVTHHIESFDYMTQKGLDVMFNRIKPVSVYDPNTENELSNILFFMILWLENPV 74
Query: 37 ---------------------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFP 75
CRQAKISYTG MADV F+Y D VVR+RF+FGQFP
Sbjct: 75 VFAPQKESFRSTSRKEPLLPFECRQAKISYTGTFMADVCFKYNDG--VVVRDRFDFGQFP 132
Query: 76 VMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSF 135
+ML ++ C L+GAD +KL+ KE +EMGGYFILNG+ERVFR VI PK+N+P SM+R+SF
Sbjct: 133 IMLMSKLCSLRGADCRKLLKCKESTSEMGGYFILNGIERVFRCVIAPKRNHPTSMIRNSF 192
Query: 136 RDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVD 195
RDR+EGYT+KAVV RCVR DQSSVT+KLYYL NGS R+GFW+ G+EYLLPVG+VLKAL +
Sbjct: 193 RDRKEGYTEKAVVTRCVRDDQSSVTVKLYYLRNGSARVGFWIVGREYLLPVGLVLKALTN 252
Query: 196 TNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHF 255
T D EI+ L CCY E Y + GA+G+ L+ ER KIIL EV+DL L TR QC +H+G+HF
Sbjct: 253 TCDEEIYESLNCCYSEHYGRGDGAIGTQLIRERAKIILDEVRDLGLFTREQCRKHLGQHF 312
Query: 256 QPVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDS 315
QPV+DGL+ ES+ VAE V+RDY+FVHL++++DKFNLLIF++QKL+SLVD TS+ DNPDS
Sbjct: 313 QPVLDGLEKESHPMVAEAVLRDYLFVHLDNDHDKFNLLIFIIQKLYSLVDQTSLPDNPDS 372
Query: 316 LQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPS 375
LQNQEIL+PGH+ITIYLKEKLEDWLRK K L++DE+ N KF F +LA++KK++ KNP
Sbjct: 373 LQNQEILVPGHVITIYLKEKLEDWLRKCKSLLKDELLNTSSKFSFESLADVKKLINKNPP 432
Query: 376 KQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRT 435
+ IGTSIET+LKTG L TQ+GLDLQQRAGYTVQAERLNFLRF+SFFRAVHRGASFAGLRT
Sbjct: 433 RSIGTSIETLLKTGALKTQSGLDLQQRAGYTVQAERLNFLRFLSFFRAVHRGASFAGLRT 492
Query: 436 TSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRV 495
T+VRKLLPESWGFLCPVHTPDG PCGLLNHMT T R+ S +DS+GNIRDF K+R S++ V
Sbjct: 493 TTVRKLLPESWGFLCPVHTPDGTPCGLLNHMTCTSRITSQFDSKGNIRDFLKIRKSVVEV 552
Query: 496 LIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDD 555
L G GM+ SLPKLV++GPP V+ VLLDG+VVG + S+ + KVV++LRRLKV A SVIP+D
Sbjct: 553 LTGAGMVSSLPKLVRAGPPKVIHVLLDGQVVGTLSSNLVTKVVSYLRRLKVEAPSVIPED 612
Query: 556 LEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPD 615
LEVGYVP+S+GG+YPGLYL + P +F+RPV+NIS+PSE NIELIGPFEQVFMEI CPD
Sbjct: 613 LEVGYVPISMGGSYPGLYLASCPARFIRPVKNISIPSE---NIELIGPFEQVFMEISCPD 669
Query: 616 GGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALK 675
GG+GGR N+ PATHEEIHPTGM+SVVANLTP+SDHNQSPRNMYQCQMAKQTM +S QAL+
Sbjct: 670 GGNGGRNNSSPATHEEIHPTGMISVVANLTPWSDHNQSPRNMYQCQMAKQTMAYSTQALQ 729
Query: 676 FRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSV 735
FRADQK+YHLQTPQ+P+VRT TYT Y IDE PTGTNAIVAVLA+TG+DMEDAMILNKSSV
Sbjct: 730 FRADQKIYHLQTPQSPVVRTKTYTTYSIDENPTGTNAIVAVLAHTGFDMEDAMILNKSSV 789
Query: 736 DRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGE 795
+RGMCHGQIYQTE IDLSD ++ D G K FRR+ KS HS ID+DGLPYVGQ I+P E
Sbjct: 790 ERGMCHGQIYQTENIDLSDQNSRYDSGHKSFRRSTTDKSDHSRIDADGLPYVGQKIYPDE 849
Query: 796 PYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFS 855
PYC IYD+ T R KG++ V VD+V+VDMK SK PQKANIRFRH RNPIIGDKFS
Sbjct: 850 PYCRIYDEVTGKQRLMKGKGTDPVIVDFVSVDMK-SKKHPQKANIRFRHARNPIIGDKFS 908
Query: 856 SRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
SRHGQKGVCSQLWPDI+MPF+GVTGMRPDLIINPHAFPSRMTIAMLLES+AAK
Sbjct: 909 SRHGQKGVCSQLWPDIEMPFNGVTGMRPDLIINPHAFPSRMTIAMLLESIAAK 961
>gi|224053240|ref|XP_002297732.1| predicted protein [Populus trichocarpa]
gi|222844990|gb|EEE82537.1| predicted protein [Populus trichocarpa]
Length = 1109
Score = 1367 bits (3538), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 660/910 (72%), Positives = 763/910 (83%), Gaps = 28/910 (3%)
Query: 8 DFEPLRELVRHHIESFDYMLDEGLSEMFDH---CRQAKISYTGKLMADVEFQYLDAGSPV 64
+F+ L ELVRHHI+SFDYM+D GL M D+ CRQAK+SYTGK ADV FQY G PV
Sbjct: 1 EFKELEELVRHHIDSFDYMVDRGLEIMLDNIKPCRQAKVSYTGKFEADVCFQY--DGRPV 58
Query: 65 VRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQ 124
+RE++NFGQFP+MLK++ C+L+ AD Q+LVSLKEEA+E+GGYFILNG+ERVFR +I+PKQ
Sbjct: 59 IREKYNFGQFPIMLKSKLCYLRSADPQQLVSLKEEASEVGGYFILNGIERVFRCLIMPKQ 118
Query: 125 NYPMSMVRSSFRDRREGYTDKAVVIRCVRK------DQSSVTLKLYYLLNGSVRLGFWLQ 178
NYPMSM R S+R+RREG+TDKAVVIRCVR+ D SSVT++LYYL NGS R+GFW++
Sbjct: 119 NYPMSMTRGSYRERREGHTDKAVVIRCVREYQSSLTDHSSVTVRLYYLRNGSARVGFWVR 178
Query: 179 GKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQD 238
G+EYLLPVGIVLKALV+T D EI+ +LT YDEKY++ KGAVGS L+ ER KIIL EV+
Sbjct: 179 GREYLLPVGIVLKALVETTDREIYENLTSYYDEKYEEVKGAVGSQLLGERAKIILDEVRV 238
Query: 239 LSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQ 298
+L T+ CLQHIG H I VA V++DY+FVHL + +DKF+LLIFMLQ
Sbjct: 239 AALFTQDDCLQHIGTHNCISIS-------ITVAHAVLKDYVFVHLPNFHDKFSLLIFMLQ 291
Query: 299 KLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKF 358
KLFS VDHTS DNPDSLQNQ+ILLPGHL+TIYLKEKLEDWLRK K L+QDE+ N F
Sbjct: 292 KLFSFVDHTSAPDNPDSLQNQDILLPGHLMTIYLKEKLEDWLRKAKSLVQDELTKN-NTF 350
Query: 359 DFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFI 418
+F + +++KVM+KN + T++E+ML++GRLATQTGLDLQQRAGYTVQAERLN+LRF+
Sbjct: 351 NFLAVGDVRKVMDKNSPVTVSTAVESMLRSGRLATQTGLDLQQRAGYTVQAERLNYLRFL 410
Query: 419 SFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDS 478
SFFRAVHRGASFAG RTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMT +CRV SY+DS
Sbjct: 411 SFFRAVHRGASFAGGRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTCSCRVTSYFDS 470
Query: 479 RGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVV 538
+G ++DF +R SIL VL +GMI SLPKLV++GPP LSVLLDGRV+G +PSSEIEKV+
Sbjct: 471 QGVVKDFFDIRKSILGVLTSLGMIASLPKLVQAGPPKALSVLLDGRVIGSLPSSEIEKVI 530
Query: 539 AHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNI 598
AHLRRLKVSA S IPDD+EVGYVPLS+GGAYPGLY+ T P +F+RPVRNIS+P EE Q+I
Sbjct: 531 AHLRRLKVSATSAIPDDMEVGYVPLSIGGAYPGLYISTYPSRFIRPVRNISIPCEERQDI 590
Query: 599 ELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMY 658
ELIGPFEQV E NAFPATHEEIHPT MLSVVANLTP+SDHNQSPRNMY
Sbjct: 591 ELIGPFEQVSTEF--------SFLNAFPATHEEIHPTNMLSVVANLTPWSDHNQSPRNMY 642
Query: 659 QCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLA 718
QCQMAKQTM FS+Q+L+FRADQK+YHLQTPQTPIVRT YTKY IDE+PTGTNAIVAVLA
Sbjct: 643 QCQMAKQTMAFSLQSLRFRADQKIYHLQTPQTPIVRTGAYTKYSIDEHPTGTNAIVAVLA 702
Query: 719 YTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSV 778
YTGYDMEDAMILNKSSVDRGM HGQIYQTETIDLSD+G++ DR + FRR+ +S HS+
Sbjct: 703 YTGYDMEDAMILNKSSVDRGMFHGQIYQTETIDLSDEGSRSDRSHRRFRRSNTDRSSHSL 762
Query: 779 IDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKA 838
IDSDGLPYVGQ+I+P EPYCSIY+ TN+ + RKGSE VDYVAVD K+ K+L QK
Sbjct: 763 IDSDGLPYVGQIINPNEPYCSIYNDITNTSKPKYRKGSEPAIVDYVAVDTKSKKHL-QKV 821
Query: 839 NIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTI 898
NIRFRH RNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTI
Sbjct: 822 NIRFRHPRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTI 881
Query: 899 AMLLESVAAK 908
AMLLES+AAK
Sbjct: 882 AMLLESLAAK 891
>gi|79356046|ref|NP_564341.2| nuclear RNA polymerase A2 [Arabidopsis thaliana]
gi|332193031|gb|AEE31152.1| nuclear RNA polymerase A2 [Arabidopsis thaliana]
Length = 1178
Score = 1359 bits (3518), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 647/946 (68%), Positives = 767/946 (81%), Gaps = 52/946 (5%)
Query: 8 DFEPLRELVRHHIESFDYMLDEGLSEMFD------------------------------- 36
DF+ L LV HHIESFDYM +GL MF+
Sbjct: 15 DFKELHNLVTHHIESFDYMTLKGLDVMFNRIKPVSVYDPNTENELSIWLENPLVFAPQKE 74
Query: 37 --------------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRR 82
CRQAKISYTG MADV F+Y D VVR++F+FGQFP+ML ++
Sbjct: 75 SFKSTSRKEPLLPFECRQAKISYTGTFMADVCFKYNDG--VVVRDKFDFGQFPIMLMSKL 132
Query: 83 CHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGY 142
C L+GAD +KL+ KE +EMGGYFILNG+ERVFR VI PK+N+P SM+R+SFRDR+EGY
Sbjct: 133 CSLKGADCRKLLKCKESTSEMGGYFILNGIERVFRCVIAPKRNHPTSMIRNSFRDRKEGY 192
Query: 143 TDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIF 202
+ KAVV RCVR DQSSVT+KLYYL NGS R+GFW+ G+EYLLPVG+VLKAL ++ D EI+
Sbjct: 193 SSKAVVTRCVRDDQSSVTVKLYYLRNGSARVGFWIVGREYLLPVGLVLKALTNSCDEEIY 252
Query: 203 NHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGL 262
L CCY E Y + GA+G+ LV ER KIIL EV+DL L TR QC +H+G+HFQPV+DG+
Sbjct: 253 ESLNCCYSEHYGRGDGAIGTQLVRERAKIILDEVRDLGLFTREQCRKHLGQHFQPVLDGV 312
Query: 263 QSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEIL 322
+ ES VAE V+RDY+FVHL++++DKFNLLIF++QKL+SLVD TS+ DNPDSLQNQEIL
Sbjct: 313 KKESLSIVAEAVLRDYLFVHLDNDHDKFNLLIFIIQKLYSLVDQTSLPDNPDSLQNQEIL 372
Query: 323 LPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSI 382
+PGH+ITIYLKEKLE+WLRK K L++DE++N KF F +LA++KK++ KNP + IGTSI
Sbjct: 373 VPGHVITIYLKEKLEEWLRKCKSLLKDELDNTNSKFSFESLADVKKLINKNPPRSIGTSI 432
Query: 383 ETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLL 442
ET+LKTG L TQ+GLDLQQRAGYTVQAERLNFLRF+SFFRAVHRGASFAGLRTT+VRKLL
Sbjct: 433 ETLLKTGALKTQSGLDLQQRAGYTVQAERLNFLRFLSFFRAVHRGASFAGLRTTTVRKLL 492
Query: 443 PESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMI 502
PESWGFLCPVHTPDG PCGLLNHMT T R+ S +DS+GNIRDF K+R S++ VL G GM+
Sbjct: 493 PESWGFLCPVHTPDGTPCGLLNHMTRTSRITSQFDSKGNIRDFLKIRKSVVDVLTGAGMV 552
Query: 503 PSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVP 562
PSLPKLV++GPP V+ VLLDG+VVG + S+ + KVV+++RRLKV A SVIP+DLEVGYVP
Sbjct: 553 PSLPKLVRAGPPKVIHVLLDGQVVGTLSSNLVTKVVSYIRRLKVEAPSVIPEDLEVGYVP 612
Query: 563 LSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRR 622
S+GG+YPGLYL + P +F+RPV+NIS+PS+ NIELIGPFEQVFMEI CPDGG+GGR
Sbjct: 613 TSMGGSYPGLYLASCPARFIRPVKNISIPSD---NIELIGPFEQVFMEISCPDGGNGGRN 669
Query: 623 NAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKL 682
N+ ATHEEIHPTGM+SVVANLTP+SDHNQSPRNMYQCQMAKQTM +S QAL+FRADQK+
Sbjct: 670 NSSLATHEEIHPTGMISVVANLTPWSDHNQSPRNMYQCQMAKQTMAYSTQALQFRADQKI 729
Query: 683 YHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHG 742
YHLQTPQ+P+VRT TYT Y IDE PTGTNAIVAVLA+TG+DMEDAMILNKSSV+RGMCHG
Sbjct: 730 YHLQTPQSPVVRTKTYTTYSIDENPTGTNAIVAVLAHTGFDMEDAMILNKSSVERGMCHG 789
Query: 743 QIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYD 802
QIYQTE IDLSD ++ D G K FRR+ + K+ H ID+DGLP VGQ ++P EPYCSIYD
Sbjct: 790 QIYQTENIDLSDQNSRFDSGSKSFRRSTN-KAEHFRIDADGLPSVGQKLYPDEPYCSIYD 848
Query: 803 KTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKG 862
+ TN R RKG++ V VD+V+VDMK SK PQ+ANIRFRH RNPIIGDKFSSRHGQKG
Sbjct: 849 EVTNKTRHMKRKGTDPVIVDFVSVDMK-SKKHPQRANIRFRHARNPIIGDKFSSRHGQKG 907
Query: 863 VCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
VCSQLWPDIDMPF+GVTGMRPDLIINPHAFPSRMTIAMLLES+AAK
Sbjct: 908 VCSQLWPDIDMPFNGVTGMRPDLIINPHAFPSRMTIAMLLESIAAK 953
>gi|12324162|gb|AAG52049.1|AC022455_3 DNA-directed RNA polymerase subunit, putative; 8546-1198
[Arabidopsis thaliana]
Length = 1114
Score = 1325 bits (3428), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 632/901 (70%), Positives = 750/901 (83%), Gaps = 26/901 (2%)
Query: 8 DFEPLRELVRHHIESFDYMLDEGLSEMFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRE 67
DF+ L LV HHIESFDYM +GL CRQAKISYTG MADV F+Y D VVR+
Sbjct: 15 DFKELHNLVTHHIESFDYMTLKGLD-----CRQAKISYTGTFMADVCFKYNDG--VVVRD 67
Query: 68 RFNFGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYP 127
+F+FGQFP+ML ++ C L+GAD +KL+ KE +EMGGYFILNG+ERVFR VI PK+N+P
Sbjct: 68 KFDFGQFPIMLMSKLCSLKGADCRKLLKCKESTSEMGGYFILNGIERVFRCVIAPKRNHP 127
Query: 128 MSMVRSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVG 187
SM+R+SFRDR+EGY+ KAVV RCVR DQSSVT+KLYYL NGS R+GFW+ G+EYLLPVG
Sbjct: 128 TSMIRNSFRDRKEGYSSKAVVTRCVRDDQSSVTVKLYYLRNGSARVGFWIVGREYLLPVG 187
Query: 188 IVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQC 247
+VLKAL ++ D EI+ L CCY E Y + GA+G+ LV ER KIIL EV+DL L TR QC
Sbjct: 188 LVLKALTNSCDEEIYESLNCCYSEHYGRGDGAIGTQLVRERAKIILDEVRDLGLFTREQC 247
Query: 248 LQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHT 307
+H+G+HFQPV+DG VAE V+RDY+FVHL++++DKFNLLIF++QKL+SLVD T
Sbjct: 248 RKHLGQHFQPVLDG--------VAEAVLRDYLFVHLDNDHDKFNLLIFIIQKLYSLVDQT 299
Query: 308 SVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIK 367
S+ DNPDSLQNQEIL+PGH+ITIYLKEKLE+WLRK K L++DE++N KF F +LA++K
Sbjct: 300 SLPDNPDSLQNQEILVPGHVITIYLKEKLEEWLRKCKSLLKDELDNTNSKFSFESLADVK 359
Query: 368 KVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRG 427
K++ KNP + IGTSIET+LKTG L TQ+GLDLQQRAGYTVQAERLNFLRF+SFFRAVHRG
Sbjct: 360 KLINKNPPRSIGTSIETLLKTGALKTQSGLDLQQRAGYTVQAERLNFLRFLSFFRAVHRG 419
Query: 428 ASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSK 487
ASFAGLRTT+VRKLLPESWGFLCPVHTPDG PCGLLNHMT T R+ S +DS+GNIRDF K
Sbjct: 420 ASFAGLRTTTVRKLLPESWGFLCPVHTPDGTPCGLLNHMTRTSRITSQFDSKGNIRDFLK 479
Query: 488 MRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVS 547
+R S++ VL G GM+PSLPKLV++GPP V+ VLLDG+VVG + S+ + KVV+++RRLKV
Sbjct: 480 IRKSVVDVLTGAGMVPSLPKLVRAGPPKVIHVLLDGQVVGTLSSNLVTKVVSYIRRLKVE 539
Query: 548 AASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQV 607
A SVIP+DLEVGYVP S+GG+YPGLYL + P +F+RPV+NIS+PS+ NIELIGPFEQV
Sbjct: 540 APSVIPEDLEVGYVPTSMGGSYPGLYLASCPARFIRPVKNISIPSD---NIELIGPFEQV 596
Query: 608 FMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTM 667
I + FPATHEEIHPTGM+SVVANLTP+SDHNQSPRNMYQCQMAKQTM
Sbjct: 597 ANPINII------FISTFPATHEEIHPTGMISVVANLTPWSDHNQSPRNMYQCQMAKQTM 650
Query: 668 GFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDA 727
+S QAL+FRADQK+YHLQTPQ+P+VRT TYT Y IDE PTGTNAIVAVLA+TG+DMEDA
Sbjct: 651 AYSTQALQFRADQKIYHLQTPQSPVVRTKTYTTYSIDENPTGTNAIVAVLAHTGFDMEDA 710
Query: 728 MILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYV 787
MILNKSSV+RGMCHGQIYQTE IDLSD ++ D G K FRR+ + K+ H ID+DGLP V
Sbjct: 711 MILNKSSVERGMCHGQIYQTENIDLSDQNSRFDSGSKSFRRSTN-KAEHFRIDADGLPSV 769
Query: 788 GQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRN 847
GQ ++P EPYCSIYD+ TN R RKG++ V VD+V+VDMK+ K+ PQ+ANIRFRH RN
Sbjct: 770 GQKLYPDEPYCSIYDEVTNKTRHMKRKGTDPVIVDFVSVDMKSKKH-PQRANIRFRHARN 828
Query: 848 PIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAA 907
PIIGDKFSSRHGQKGVCSQLWPDIDMPF+GVTGMRPDLIINPHAFPSRMTIAMLLES+AA
Sbjct: 829 PIIGDKFSSRHGQKGVCSQLWPDIDMPFNGVTGMRPDLIINPHAFPSRMTIAMLLESIAA 888
Query: 908 K 908
K
Sbjct: 889 K 889
>gi|9972352|gb|AAG10602.1|AC008030_2 Similar to DNA-directed RNA polymerase subunit [Arabidopsis thaliana]
Length = 1233
Score = 1303 bits (3372), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 621/899 (69%), Positives = 738/899 (82%), Gaps = 40/899 (4%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CRQAKISYTG MADV F+Y D VVR++F+FGQFP+ML ++ C L+GAD +KL+ K
Sbjct: 122 CRQAKISYTGTFMADVCFKYNDG--VVVRDKFDFGQFPIMLMSKLCSLKGADCRKLLKCK 179
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
E +EMGGYFILNG+ERVFR VI PK+N+P SM+R+SFRDR+EGY+ KAVV RCVR DQS
Sbjct: 180 ESTSEMGGYFILNGIERVFRCVIAPKRNHPTSMIRNSFRDRKEGYSSKAVVTRCVRDDQS 239
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
SVT+KLYYL NGS R+GFW+ G+EYLLPVG+VLKAL ++ D EI+ L CCY E Y +
Sbjct: 240 SVTVKLYYLRNGSARVGFWIVGREYLLPVGLVLKALTNSCDEEIYESLNCCYSEHYGRGD 299
Query: 218 GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRD 277
GA+G+ LV ER KIIL EV+DL L TR QC +H+G+HFQPV+DG++ ES VAE V+RD
Sbjct: 300 GAIGTQLVRERAKIILDEVRDLGLFTREQCRKHLGQHFQPVLDGVKKESLSIVAEAVLRD 359
Query: 278 YIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLE 337
Y+FVHL++++DKFNLLIF++QKL+SLVD TS+ DNPDSLQNQEIL+PGH+ITIYLKEKLE
Sbjct: 360 YLFVHLDNDHDKFNLLIFIIQKLYSLVDQTSLPDNPDSLQNQEILVPGHVITIYLKEKLE 419
Query: 338 DWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGL 397
+WLRK K L++DE++N KF F + ++ + IGTSIET+LKTG L TQ+GL
Sbjct: 420 EWLRKCKSLLKDELDNTNSKFSFESRKSLLILFS-----LIGTSIETLLKTGALKTQSGL 474
Query: 398 DLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDG 457
DLQQRAGYTVQAERLNFLRF+SFFRAVHRGASFAGLRTT+VRKLLPESWGFLCPVHTPDG
Sbjct: 475 DLQQRAGYTVQAERLNFLRFLSFFRAVHRGASFAGLRTTTVRKLLPESWGFLCPVHTPDG 534
Query: 458 EPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVL 517
PCGLLNHMT T R+ S +DS+GNIRDF K+R S++ VL G GM+PSLPKLV++GPP V+
Sbjct: 535 TPCGLLNHMTRTSRITSQFDSKGNIRDFLKIRKSVVDVLTGAGMVPSLPKLVRAGPPKVI 594
Query: 518 SVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTS 577
VLLDG+VVG + S+ + KVV+++RRLKV A SVIP+DLEVGYVP S+GG+YPGLYL +
Sbjct: 595 HVLLDGQVVGTLSSNLVTKVVSYIRRLKVEAPSVIPEDLEVGYVPTSMGGSYPGLYLASC 654
Query: 578 PPKFVRPVRNISLPSEESQNIELIGPFEQV----------------------------FM 609
P +F+RPV+NIS+PS+ NIELIGPFEQV FM
Sbjct: 655 PARFIRPVKNISIPSD---NIELIGPFEQVANPINIIFISTFPGIQSNEKKKILPNQVFM 711
Query: 610 EIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGF 669
EI CPDGG+GGR N+ ATHEEIHPTGM+SVVANLTP+SDHNQSPRNMYQCQMAKQTM +
Sbjct: 712 EISCPDGGNGGRNNSSLATHEEIHPTGMISVVANLTPWSDHNQSPRNMYQCQMAKQTMAY 771
Query: 670 SVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMI 729
S QAL+FRADQK+YHLQTPQ+P+VRT TYT Y IDE PTGTNAIVAVLA+TG+DMEDAMI
Sbjct: 772 STQALQFRADQKIYHLQTPQSPVVRTKTYTTYSIDENPTGTNAIVAVLAHTGFDMEDAMI 831
Query: 730 LNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQ 789
LNKSSV+RGMCHGQIYQTE IDLSD ++ D G K FRR+ + K+ H ID+DGLP VGQ
Sbjct: 832 LNKSSVERGMCHGQIYQTENIDLSDQNSRFDSGSKSFRRSTN-KAEHFRIDADGLPSVGQ 890
Query: 790 MIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPI 849
++P EPYCSIYD+ TN R RKG++ V VD+V+VDMK+ K+ PQ+ANIRFRH RNPI
Sbjct: 891 KLYPDEPYCSIYDEVTNKTRHMKRKGTDPVIVDFVSVDMKSKKH-PQRANIRFRHARNPI 949
Query: 850 IGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
IGDKFSSRHGQKGVCSQLWPDIDMPF+GVTGMRPDLIINPHAFPSRMTIAMLLES+AAK
Sbjct: 950 IGDKFSSRHGQKGVCSQLWPDIDMPFNGVTGMRPDLIINPHAFPSRMTIAMLLESIAAK 1008
Score = 41.2 bits (95), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 23/36 (63%)
Query: 8 DFEPLRELVRHHIESFDYMLDEGLSEMFDHCRQAKI 43
DF+ L LV HHIESFDYM +GL MF+ + +
Sbjct: 15 DFKELHNLVTHHIESFDYMTLKGLDVMFNRIKPVSV 50
>gi|414870913|tpg|DAA49470.1| TPA: hypothetical protein ZEAMMB73_824600 [Zea mays]
Length = 1162
Score = 1204 bits (3114), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 582/933 (62%), Positives = 711/933 (76%), Gaps = 32/933 (3%)
Query: 2 ARKKSADFEPLRELVRHHIESFDYMLDEGLSEMFD------------------------- 36
A K D+ LREL R H+ESFDY LD+GL EM +
Sbjct: 11 AVAKEGDYSALRELFRPHVESFDYFLDKGLDEMIESIRPMGHVLSPMRGARPGVLPIYPQ 70
Query: 37 -HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVS 95
CRQA+ISY G+ +V FQY + +R FNFG P+ML ++ CHL+GAD KLV
Sbjct: 71 EQCRQARISYHGEFKVEVCFQYNEGAQ--IRHTFNFGHLPIMLMSKLCHLRGADPHKLVF 128
Query: 96 LKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKD 155
EEA EMGGYFI G+ER+ R ++L K+NYPM +VR+SF R GYTDKAVVIRCV++D
Sbjct: 129 HGEEATEMGGYFICGGMERLVRILVLQKRNYPMGLVRNSFLKRGAGYTDKAVVIRCVQRD 188
Query: 156 QSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKK 215
QSSVT+KLYY+LNGS RLGFWL G+E+LLPVGIVLKAL+D +D EIF LTCCY +K+ +
Sbjct: 189 QSSVTIKLYYILNGSARLGFWLGGREFLLPVGIVLKALIDASDREIFTSLTCCYSDKHGR 248
Query: 216 EKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVI 275
KG V + L+ ER +I+L EV++LS+ TR QCL HIG++F+ V++G +++ Y VAE V+
Sbjct: 249 GKGVVSTQLIGERAQIVLDEVRNLSILTRTQCLVHIGQYFRSVMEGFENDDYITVAEAVL 308
Query: 276 RDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEK 335
+DYIFVHL +N+DKFNLLIFMLQKL++LVD T+ DNPD+LQ QE LLPGHL T++LK++
Sbjct: 309 KDYIFVHLENNHDKFNLLIFMLQKLYALVDQTASPDNPDALQYQEALLPGHLFTVFLKDR 368
Query: 336 LEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQT 395
L++WLRK K+LI +E N K FD N I+K + K + +G ++E+M+K G + +++
Sbjct: 369 LQEWLRKSKRLILEEAAKN-KGFDLGNALEIRKFLTKY-TTSVGRAVESMIKVGNVNSRS 426
Query: 396 GLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTP 455
GLDL QR G T+ AERLNF R+IS FR+VHRG++FA +RTTSVRKLLPESWGFLCPVHTP
Sbjct: 427 GLDLPQREGMTIHAERLNFHRYISHFRSVHRGSAFAKMRTTSVRKLLPESWGFLCPVHTP 486
Query: 456 DGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPA 515
DGEPCGLLNHMTSTCRV+S+Y+S G I++F +M+ + L+ VGM P LPK+ ++GPP
Sbjct: 487 DGEPCGLLNHMTSTCRVSSFYNSEGVIKNFGEMKKLLSAELVRVGMNPVLPKIEQTGPPE 546
Query: 516 VLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLF 575
VL V LDG ++G I S+ IEK V +LR LK+ A S IP+DLEVGYVP S GA+PGLYLF
Sbjct: 547 VLHVHLDGCILGTIASAMIEKAVNYLRTLKLLAHSGIPEDLEVGYVPPSFNGAFPGLYLF 606
Query: 576 TSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIHPT 635
T+P +FVRPVRN+ + S+ Q+IELIGPFEQ FMEIRCPDGGDGGR+ FPATHEEIHPT
Sbjct: 607 TNPARFVRPVRNLFILSDGKQSIELIGPFEQAFMEIRCPDGGDGGRQEPFPATHEEIHPT 666
Query: 636 GMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRT 695
+LSVVANLTP+SDHNQSPRNMYQCQMAKQTMGF QALKFR D K +HLQTPQTPIVRT
Sbjct: 667 AILSVVANLTPWSDHNQSPRNMYQCQMAKQTMGFCGQALKFRTDVKAFHLQTPQTPIVRT 726
Query: 696 NTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDD 755
TYTKY +DE+P+GTNAIVAVL+YTGYDMEDAMILNKS+V+RGM G IYQTE IDLS
Sbjct: 727 GTYTKYCMDEFPSGTNAIVAVLSYTGYDMEDAMILNKSAVERGMFRGHIYQTECIDLSTK 786
Query: 756 GNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKG 815
D + F ++ + +VIDSDGLP +GQ +HP E Y S+++ TN R KG
Sbjct: 787 SR--DNVPETFAKSILTRDTSNVIDSDGLPRLGQAVHPNEQYYSVHNSLTNVIRPVKLKG 844
Query: 816 SESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPF 875
+E F+DYVAV+ SK QKANIR R RNPIIGDKFSSRHGQKGVCSQLWPDIDMPF
Sbjct: 845 TEPAFIDYVAVNGTGSKCGLQKANIRLRRVRNPIIGDKFSSRHGQKGVCSQLWPDIDMPF 904
Query: 876 SGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
S TGMRPDLIINPHAFPSRMTIAMLLES+AAK
Sbjct: 905 SANTGMRPDLIINPHAFPSRMTIAMLLESMAAK 937
>gi|326504892|dbj|BAK06737.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 978
Score = 1185 bits (3065), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 585/944 (61%), Positives = 708/944 (75%), Gaps = 50/944 (5%)
Query: 8 DFEPLRELVRHHIESFDYMLDEGLSEMF-------------------------------- 35
D+ LREL R HIESFDY LDEGL +M
Sbjct: 20 DYATLRELYRPHIESFDYFLDEGLDKMLLSIRPMEITHPSSNTTLRMSLEKGHVLPPMKD 79
Query: 36 ---------DHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQ 86
CRQ +ISY+G+ + FQ+ D G+P+ R+ FNFGQ P+ML ++ CHL+
Sbjct: 80 GRLGQPLYPQECRQGRISYSGEFKVEAVFQFND-GAPI-RQTFNFGQLPIMLMSKLCHLR 137
Query: 87 GADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKA 146
GADS+KL+ EEA EMGGYFI GLER+ R +IL K+NYPM MVR +F R GYTDKA
Sbjct: 138 GADSRKLIYHGEEATEMGGYFISGGLERLIRILILQKRNYPMGMVRGAFIKRGAGYTDKA 197
Query: 147 VVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLT 206
VV+RCV DQSSVT+KLYYL NGS RLGFW G+E LLPVGI+LKAL+DT+D EIF LT
Sbjct: 198 VVMRCVHHDQSSVTVKLYYLQNGSARLGFWFGGREILLPVGIILKALIDTSDREIFASLT 257
Query: 207 CCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSES 266
CCY +K ++ KG V + L+ ER +IIL EV+ LSL TR QCL HIG++F+ ++G + +
Sbjct: 258 CCYSDKRERGKGVVSTQLIGERTQIILDEVRALSLFTRTQCLVHIGKYFRSAMEGFEKDD 317
Query: 267 YYAVAETVIRDYIFVHL-NDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPG 325
Y VAE VI+DYI VHL NDN+ KFNLLIFMLQKL++LVD T+ DNPD+LQ QE LLPG
Sbjct: 318 YETVAEAVIKDYILVHLQNDNHAKFNLLIFMLQKLYALVDQTTSPDNPDALQFQEALLPG 377
Query: 326 HLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETM 385
HLIT++LK++++DWL+K K+LI +EI N K F+ + I+K + K + +G +IE +
Sbjct: 378 HLITVFLKDRIQDWLQKSKRLIMEEITKN-KSFELNSSLEIRKFLSKY-TTSVGRAIEAL 435
Query: 386 LKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPES 445
+K GR +Q+ LDL QR G T+QAERLNF R+IS FR+VHRG+SFA +RTT+VRKLLPES
Sbjct: 436 IKVGRANSQSMLDLPQREGMTIQAERLNFHRYISHFRSVHRGSSFAKMRTTTVRKLLPES 495
Query: 446 WGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSL 505
WGFLCPVHTPDGEPCGLLNHMTSTCR++S Y+S G I+DF K++ +L L+ GMIP L
Sbjct: 496 WGFLCPVHTPDGEPCGLLNHMTSTCRISSCYNSEGAIKDFQKIKDKLLVELVRGGMIPLL 555
Query: 506 PKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSL 565
PK+ +GPP ++ V LDG +VG I S++IE+VV +LRRLK+ A P+DLEVGYVPLSL
Sbjct: 556 PKMEHTGPPEIMHVHLDGCIVGSIASAKIEEVVNYLRRLKLLAHPATPEDLEVGYVPLSL 615
Query: 566 GGAYPGLYLFTSPPKFVRPVRN-ISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNA 624
GGAYPGLYLFTSP +FVRPV+N +SLP E +IELIGPFEQ FMEIRCPDGGDGGR+
Sbjct: 616 GGAYPGLYLFTSPARFVRPVKNLVSLPDGEP-HIELIGPFEQAFMEIRCPDGGDGGRKEK 674
Query: 625 FPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYH 684
FPATHEEIHPT +LSVVANLTP+SDHNQSPRNMYQCQMAKQTMGF QALKFR D K +H
Sbjct: 675 FPATHEEIHPTAILSVVANLTPWSDHNQSPRNMYQCQMAKQTMGFCGQALKFRTDVKAFH 734
Query: 685 LQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQI 744
LQTPQ+PIVRT TY KY +DE+P+GTNAIVAVL+YTGYDMEDAMILNKS+VDRGM G I
Sbjct: 735 LQTPQSPIVRTATYKKYHMDEFPSGTNAIVAVLSYTGYDMEDAMILNKSAVDRGMFRGDI 794
Query: 745 YQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKT 804
+QTE IDLS + + ++F ++ +K VIDSDGLP VG+ + P E Y S+Y+
Sbjct: 795 FQTECIDLS--AKRTENVPEIFAKSPLSKGTGDVIDSDGLPRVGETVVPYEQYYSVYNTL 852
Query: 805 TNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVC 864
T + R KG+E +DYVA++ NSK QK NIR R RNPIIGDKFSSRHGQKGVC
Sbjct: 853 TGAIRPVRLKGTEPAAIDYVALNGTNSKGSLQKVNIRLRRKRNPIIGDKFSSRHGQKGVC 912
Query: 865 SQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
SQLWPDIDMPFS TGMRPDLIINPHAFPSRMTIAMLLES+AAK
Sbjct: 913 SQLWPDIDMPFSANTGMRPDLIINPHAFPSRMTIAMLLESIAAK 956
>gi|357146829|ref|XP_003574126.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 [Brachypodium
distachyon]
Length = 1181
Score = 1182 bits (3057), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 581/951 (61%), Positives = 712/951 (74%), Gaps = 53/951 (5%)
Query: 2 ARKKSADFEPLRELVRHHIESFDYMLDEGLSEMF-------------------------- 35
A K ++ LREL R HIESFDY LDEGL +M
Sbjct: 13 AAGKDGEYATLRELYRPHIESFDYFLDEGLDKMLLSIRPMDISHPSSSDTLRISLEKGHL 72
Query: 36 ---------------DHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKT 80
CRQA+ISY+G+ D FQ+ + G+P+ R+ FNFG P+ML +
Sbjct: 73 LPPLRDVRMAKPLYPQECRQARISYSGEFKVDTLFQF-NNGAPM-RQTFNFGHLPIMLMS 130
Query: 81 RRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRRE 140
+ CHL+GADS+KL+ EEA EMGGYFI G+ER+ R ++L K+NYPM MVR +F R
Sbjct: 131 KLCHLRGADSRKLIYHGEEATEMGGYFINGGMERLIRILVLQKRNYPMGMVRGAFEKRGP 190
Query: 141 GYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLE 200
GYTDKAVVIRCV++DQ+SVT+KLYYL NGS RLGFWL +E LLPVGIVLKAL+DT+D E
Sbjct: 191 GYTDKAVVIRCVQQDQTSVTVKLYYLQNGSARLGFWLGAREVLLPVGIVLKALIDTSDRE 250
Query: 201 IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
IF LTCCY +KY++ KG V + L+ ER +IIL EV+ LSL TR QCL+HIG++F+ ++
Sbjct: 251 IFASLTCCYSDKYERGKGVVSNQLIGERAQIILDEVRALSLLTRTQCLEHIGQYFRSAME 310
Query: 261 GLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQE 320
G + + Y VAE V++DY+ VHL +N+ KFNLLIFMLQKL++LVD T+ DNPD+LQ QE
Sbjct: 311 GFEKDDYQTVAEAVLKDYVLVHLQNNHAKFNLLIFMLQKLYALVDQTASPDNPDALQYQE 370
Query: 321 ILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGT 380
LLPG+LIT++LK++++DWLRK K+LI +E N K F+F N I+K + K+ S +G
Sbjct: 371 ALLPGYLITVFLKDRIQDWLRKSKRLIIEEATKN-KSFEFDNSQEIRKFLCKH-STSVGR 428
Query: 381 SIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRK 440
+IE+++K GR +Q+ LDL QR G ++QAERLNF R+IS FR+VHRG++FA +RTT+VRK
Sbjct: 429 AIESLIKIGRANSQSMLDLPQREGMSIQAERLNFHRYISHFRSVHRGSAFAKMRTTTVRK 488
Query: 441 LLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVG 500
LLPESWGFLCPVHTPDGEPCGLLNHMTS CR++S+Y S G ++DF K++ +L L+ G
Sbjct: 489 LLPESWGFLCPVHTPDGEPCGLLNHMTSACRISSFYHSEGAMKDFEKIKDRLLAELVRGG 548
Query: 501 MIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGY 560
MIP PK+ +GPP VL V LDG +VG I S++IE++V ++RRLK+ A P+DLEVGY
Sbjct: 549 MIPLSPKMEHTGPPEVLHVHLDGCIVGSIGSAKIEELVNYIRRLKLLAHPATPEDLEVGY 608
Query: 561 VPLSLGGAYPGLYLFTSPPKFVRPVRN-ISLPSEESQNIELIGPFEQVFMEIRCPDGGDG 619
VPLS+GGAYPGLY FTSP +FVRPV+N +SLP E +IELIG FEQ FMEIRCPDGGDG
Sbjct: 609 VPLSIGGAYPGLYFFTSPARFVRPVKNLVSLPDGEP-HIELIGAFEQAFMEIRCPDGGDG 667
Query: 620 GRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRAD 679
GR+ +FPATHEEIHPT MLSVVANLTP+S+HNQSPRNMYQCQMAKQTMGF QALKFR D
Sbjct: 668 GRKESFPATHEEIHPTAMLSVVANLTPWSEHNQSPRNMYQCQMAKQTMGFCGQALKFRTD 727
Query: 680 QKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGM 739
K +HLQTPQ+PIVRT TY KY +DE+P+GTNAIVAVL+YTGYDMEDAMILNKS+VDRGM
Sbjct: 728 VKAFHLQTPQSPIVRTATYKKYHMDEFPSGTNAIVAVLSYTGYDMEDAMILNKSAVDRGM 787
Query: 740 CHGQIYQTETIDLSDDGNKVDRGQ--KLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPY 797
G IYQTE IDLS RG ++F ++ ++ SVIDSDGLP VG+ I P E Y
Sbjct: 788 FRGDIYQTECIDLS----TTRRGSVAEIFAKSSLSRDSSSVIDSDGLPRVGETIVPNEQY 843
Query: 798 CSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSR 857
S Y+ T + R KG+E +DYVAV+ NSK QK NIR R RNPIIGDKFSSR
Sbjct: 844 YSTYNTLTGAIRPTRLKGTEPAAIDYVAVNGTNSKGSLQKVNIRLRRKRNPIIGDKFSSR 903
Query: 858 HGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
HGQKGVCSQLWPDIDMPFS TGMRPDLIINPHAFPSRMTIAMLLES+AAK
Sbjct: 904 HGQKGVCSQLWPDIDMPFSANTGMRPDLIINPHAFPSRMTIAMLLESIAAK 954
>gi|414870912|tpg|DAA49469.1| TPA: hypothetical protein ZEAMMB73_824600 [Zea mays]
Length = 1128
Score = 1151 bits (2978), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 567/933 (60%), Positives = 685/933 (73%), Gaps = 66/933 (7%)
Query: 2 ARKKSADFEPLRELVRHHIESFDYMLDEGLSEMFD------------------------- 36
A K D+ LREL R H+ESFDY LD+GL EM +
Sbjct: 11 AVAKEGDYSALRELFRPHVESFDYFLDKGLDEMIESIRPMGHVLSPMRGARPGVLPIYPQ 70
Query: 37 -HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVS 95
CRQA+ISY G+ +V FQY + +R FNFG P+ML ++ CHL+GAD KLV
Sbjct: 71 EQCRQARISYHGEFKVEVCFQYNEGAQ--IRHTFNFGHLPIMLMSKLCHLRGADPHKLVF 128
Query: 96 LKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKD 155
EEA EMGGYFI G+ER+ R ++L K+NYPM +VR+SF R GYTDKAVVIRCV++D
Sbjct: 129 HGEEATEMGGYFICGGMERLVRILVLQKRNYPMGLVRNSFLKRGAGYTDKAVVIRCVQRD 188
Query: 156 QSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKK 215
QSSVT+KLYY+LNGS RLGFWL G+E+LLPVGIVLKAL+D +D EIF LTCCY +K+ +
Sbjct: 189 QSSVTIKLYYILNGSARLGFWLGGREFLLPVGIVLKALIDASDREIFTSLTCCYSDKHGR 248
Query: 216 EKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVI 275
KG V + L+ ER +I+L EV AE V+
Sbjct: 249 GKGVVSTQLIGERAQIVLDEV----------------------------------AEAVL 274
Query: 276 RDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEK 335
+DYIFVHL +N+DKFNLLIFMLQKL++LVD T+ DNPD+LQ QE LLPGHL T++LK++
Sbjct: 275 KDYIFVHLENNHDKFNLLIFMLQKLYALVDQTASPDNPDALQYQEALLPGHLFTVFLKDR 334
Query: 336 LEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQT 395
L++WLRK K+LI +E N K FD N I+K + K + +G ++E+M+K G + +++
Sbjct: 335 LQEWLRKSKRLILEEAAKN-KGFDLGNALEIRKFLTKY-TTSVGRAVESMIKVGNVNSRS 392
Query: 396 GLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTP 455
GLDL QR G T+ AERLNF R+IS FR+VHRG++FA +RTTSVRKLLPESWGFLCPVHTP
Sbjct: 393 GLDLPQREGMTIHAERLNFHRYISHFRSVHRGSAFAKMRTTSVRKLLPESWGFLCPVHTP 452
Query: 456 DGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPA 515
DGEPCGLLNHMTSTCRV+S+Y+S G I++F +M+ + L+ VGM P LPK+ ++GPP
Sbjct: 453 DGEPCGLLNHMTSTCRVSSFYNSEGVIKNFGEMKKLLSAELVRVGMNPVLPKIEQTGPPE 512
Query: 516 VLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLF 575
VL V LDG ++G I S+ IEK V +LR LK+ A S IP+DLEVGYVP S GA+PGLYLF
Sbjct: 513 VLHVHLDGCILGTIASAMIEKAVNYLRTLKLLAHSGIPEDLEVGYVPPSFNGAFPGLYLF 572
Query: 576 TSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIHPT 635
T+P +FVRPVRN+ + S+ Q+IELIGPFEQ FMEIRCPDGGDGGR+ FPATHEEIHPT
Sbjct: 573 TNPARFVRPVRNLFILSDGKQSIELIGPFEQAFMEIRCPDGGDGGRQEPFPATHEEIHPT 632
Query: 636 GMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRT 695
+LSVVANLTP+SDHNQSPRNMYQCQMAKQTMGF QALKFR D K +HLQTPQTPIVRT
Sbjct: 633 AILSVVANLTPWSDHNQSPRNMYQCQMAKQTMGFCGQALKFRTDVKAFHLQTPQTPIVRT 692
Query: 696 NTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDD 755
TYTKY +DE+P+GTNAIVAVL+YTGYDMEDAMILNKS+V+RGM G IYQTE IDLS
Sbjct: 693 GTYTKYCMDEFPSGTNAIVAVLSYTGYDMEDAMILNKSAVERGMFRGHIYQTECIDLSTK 752
Query: 756 GNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKG 815
D + F ++ + +VIDSDGLP +GQ +HP E Y S+++ TN R KG
Sbjct: 753 SR--DNVPETFAKSILTRDTSNVIDSDGLPRLGQAVHPNEQYYSVHNSLTNVIRPVKLKG 810
Query: 816 SESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPF 875
+E F+DYVAV+ SK QKANIR R RNPIIGDKFSSRHGQKGVCSQLWPDIDMPF
Sbjct: 811 TEPAFIDYVAVNGTGSKCGLQKANIRLRRVRNPIIGDKFSSRHGQKGVCSQLWPDIDMPF 870
Query: 876 SGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
S TGMRPDLIINPHAFPSRMTIAMLLES+AAK
Sbjct: 871 SANTGMRPDLIINPHAFPSRMTIAMLLESMAAK 903
>gi|218184815|gb|EEC67242.1| hypothetical protein OsI_34174 [Oryza sativa Indica Group]
Length = 1086
Score = 1137 bits (2942), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 550/904 (60%), Positives = 677/904 (74%), Gaps = 53/904 (5%)
Query: 5 KSADFEPLRELVRHHIESFDYMLDEGLSEMFDHCRQAKISYTGKLMADVEFQYLDAGSPV 64
K + LREL R HI+SFDY +DEGL +M R
Sbjct: 11 KEDQYAALRELYRPHIDSFDYFIDEGLDKMLQSIR------------------------- 45
Query: 65 VRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQ 124
PV + ++ CHL+GADS+KL+ EEA EMGGYFI G+ER+ R +IL K+
Sbjct: 46 ----------PVEITSKLCHLRGADSEKLIFHGEEATEMGGYFICGGMERLVRILILQKR 95
Query: 125 NYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLL 184
NYPM ++R SF +R GYTDKAV+IRCV+ DQSSVT+KLYYLLNGS RLGFWL G+E+LL
Sbjct: 96 NYPMGLIRGSFVNRGAGYTDKAVIIRCVQDDQSSVTIKLYYLLNGSARLGFWLGGREFLL 155
Query: 185 PVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTR 244
PVGIVLKAL+DT+D EIF LTCCY + Y++ KG V + L+ ER +IIL EV+DLSL TR
Sbjct: 156 PVGIVLKALIDTSDREIFTSLTCCYSDHYERGKGVVSTQLIGERAQIILDEVRDLSLFTR 215
Query: 245 LQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLV 304
+CL H+G++F+ V++G + + + VAE V++DYIFVHL +N+DKFNLLIFMLQKL+++V
Sbjct: 216 TECLLHLGKYFRSVMEGFEKDDFETVAEAVLKDYIFVHLQNNHDKFNLLIFMLQKLYAIV 275
Query: 305 DHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLA 364
D T+ D D+LQ QE+LLPGHLIT++LK++L+DWLRK K+LI +E N K FD +
Sbjct: 276 DQTASPDKADALQYQEVLLPGHLITVFLKDRLQDWLRKSKRLIVEEATKN-KSFDLNDSQ 334
Query: 365 NIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAV 424
++K + K S +G +I++M+K G++ +Q+GLDL QR G T+ AERLNF R+IS FR+V
Sbjct: 335 EVRKFLSKT-SAYVGKAIQSMIKVGKVNSQSGLDLPQRDGMTIHAERLNFHRYISHFRSV 393
Query: 425 HRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRD 484
HRG+SFA +RTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCR++S+Y+S G +D
Sbjct: 394 HRGSSFAKMRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRISSFYNSEGATKD 453
Query: 485 FSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRL 544
F K++ S++ L+G GM LP++ ++GPP VL V +DG +VG I S++IE+
Sbjct: 454 FQKIKMSLIARLVGAGMAQLLPRIERTGPPEVLHVHVDGCIVGSIASAKIEE-------- 505
Query: 545 KVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPF 604
VIP+DLEVGYVPLS GGAYPGLYLFT+P +F+RPVR++ S NIELIGPF
Sbjct: 506 ------VIPEDLEVGYVPLSHGGAYPGLYLFTNPARFLRPVRSLLGLSNGGPNIELIGPF 559
Query: 605 EQVFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAK 664
EQ FMEIRCPDGGDGGR FPATHEEIHPT +LSVVANLTP+SDHNQSPRNMYQCQMAK
Sbjct: 560 EQAFMEIRCPDGGDGGRNKLFPATHEEIHPTAILSVVANLTPWSDHNQSPRNMYQCQMAK 619
Query: 665 QTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDM 724
QTMGF QALKFR D K +HLQTPQTPIVRT TY+KY +DE+P+GTNAIVAVL+YTGYDM
Sbjct: 620 QTMGFCGQALKFRTDVKAFHLQTPQTPIVRTATYSKYCMDEFPSGTNAIVAVLSYTGYDM 679
Query: 725 EDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGL 784
EDAMILNKS+VDRGM G I+QTE IDLS D + F ++ ++ + I+SDGL
Sbjct: 680 EDAMILNKSAVDRGMFRGHIFQTECIDLS--AKSRDNVTEFFCKSNLSRDTTAAIESDGL 737
Query: 785 PYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRH 844
P +G+ I P E Y S+ + T + R KGSE +DYVAV+ N K+ QKANIR R
Sbjct: 738 PRIGENIFPNEQYYSVCNNLTGTVRPIKLKGSEPAAIDYVAVNGTNFKDRLQKANIRLRR 797
Query: 845 TRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLES 904
RNPIIGDKFSSRHGQKGVCSQLWPDIDMPFS TGMRPDLIINPHAFPSRMTIAMLLES
Sbjct: 798 VRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSANTGMRPDLIINPHAFPSRMTIAMLLES 857
Query: 905 VAAK 908
+AAK
Sbjct: 858 IAAK 861
>gi|222613075|gb|EEE51207.1| hypothetical protein OsJ_32024 [Oryza sativa Japonica Group]
Length = 1150
Score = 1126 bits (2912), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 554/935 (59%), Positives = 687/935 (73%), Gaps = 51/935 (5%)
Query: 5 KSADFEPLRELVRHHIESFDYMLDEGLSEMFDHCRQAKISYTGKLMADVEFQYLDAGSPV 64
K + LREL R HI+SFDY +DEGL +M R +I+ K + + G+P
Sbjct: 11 KEDQYAALRELYRPHIDSFDYFIDEGLDKMLQSIRPVEITVP-KSPTTLRNILPELGTPK 69
Query: 65 VRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQ 124
Q +L ++ CHL+GADS+KL+ EEA EMGGYFI G+ER+ R +IL K+
Sbjct: 70 A-SILKKVQIHHILVSKLCHLRGADSEKLIFHGEEATEMGGYFICGGMERLVRILILQKR 128
Query: 125 NYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLL 184
NYPM ++R SF +R GYTDKAV+IRCV+ DQSSVT+KLYYLLNGS RLGFWL G+E+LL
Sbjct: 129 NYPMGLIRGSFVNRGAGYTDKAVIIRCVQDDQSSVTIKLYYLLNGSARLGFWLGGREFLL 188
Query: 185 PVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTR 244
PVGIVLKAL+DT+D EIF LTCCY + Y++ KG V + L+ ER +IIL EV+DLSL TR
Sbjct: 189 PVGIVLKALIDTSDREIFTSLTCCYSDHYERGKGVVSTQLIGERAQIILDEVRDLSLFTR 248
Query: 245 LQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLV 304
+CL H+G++F+ V++G + + + VAE V++DYIFVHL +N+DKFNLLIFMLQKL+++V
Sbjct: 249 TECLLHLGKYFRSVMEGFEKDDFETVAEAVLKDYIFVHLQNNHDKFNLLIFMLQKLYAIV 308
Query: 305 DHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLA 364
D T+ D D+LQ QE+LLPGHLIT++LK++L+DWLRK K+LI +E N K FD +
Sbjct: 309 DQTASPDKADALQYQEVLLPGHLITVFLKDRLQDWLRKSKRLIVEEATKN-KSFDLNDFR 367
Query: 365 N-------------------------------IKKVMEKNPSKQIGTSIETMLKTGRLAT 393
+ ++K + K S +G +I++M+K G++ +
Sbjct: 368 DFILEGQVKGTSRVIETSSGKPCWLMRIGAQEVRKFLSKT-SAYVGKAIQSMIKVGKVNS 426
Query: 394 QTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVH 453
Q+GLDL QR G T+ AERLNF R+IS FR+VHRG+SFA +RTTSVRKLLPESWGFLCPVH
Sbjct: 427 QSGLDLPQRDGMTIHAERLNFHRYISHFRSVHRGSSFAKMRTTSVRKLLPESWGFLCPVH 486
Query: 454 TPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGP 513
TPDGEPCGLLNHMTSTCR++S+Y+S G +DF K++ S++ L+G GM LP++ ++GP
Sbjct: 487 TPDGEPCGLLNHMTSTCRISSFYNSEGATKDFQKIKMSLIARLVGAGMAQLLPRIERTGP 546
Query: 514 PAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLY 573
P VL V +DG +VG I S++IE+V IP+DLEVGYVPLS GGAYPGLY
Sbjct: 547 PEVLHVHVDGCIVGSIASAKIEEV--------------IPEDLEVGYVPLSHGGAYPGLY 592
Query: 574 LFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIH 633
LFT+P +F+RPVR++ S NIELIGPFEQ FMEIRCPDGGDGGR FPATHEEIH
Sbjct: 593 LFTNPARFLRPVRSLLGLSNGGPNIELIGPFEQAFMEIRCPDGGDGGRNKLFPATHEEIH 652
Query: 634 PTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIV 693
PT +LSVVANLTP+SDHNQSPRNMYQCQMAKQTMGF QALKFR D K +HLQTPQTPIV
Sbjct: 653 PTAILSVVANLTPWSDHNQSPRNMYQCQMAKQTMGFCGQALKFRTDVKAFHLQTPQTPIV 712
Query: 694 RTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLS 753
RT TY+KY +DE+P+GTNAIVAVL+YTGYDMEDAMILNKS+VDRGM G I+QTE IDLS
Sbjct: 713 RTATYSKYCMDEFPSGTNAIVAVLSYTGYDMEDAMILNKSAVDRGMFRGHIFQTECIDLS 772
Query: 754 DDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSR 813
D + F ++ ++ + I+SDGLP +G+ I P E Y S+ + T + R
Sbjct: 773 --AKSRDNVTEFFCKSNLSRDTTAAIESDGLPRIGENIFPNEQYYSVCNNLTGTVRPIKL 830
Query: 814 KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDM 873
KGSE +DYVAV+ N K+ QKANIR R RNPIIGDKFSSRHGQKGVCSQLWPDIDM
Sbjct: 831 KGSEPAAIDYVAVNGTNFKDRLQKANIRLRRVRNPIIGDKFSSRHGQKGVCSQLWPDIDM 890
Query: 874 PFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
PFS TGMRPDLIINPHAFPSRMTIAMLLES+AAK
Sbjct: 891 PFSANTGMRPDLIINPHAFPSRMTIAMLLESIAAK 925
>gi|357479197|ref|XP_003609884.1| DNA-directed RNA polymerase [Medicago truncatula]
gi|355510939|gb|AES92081.1| DNA-directed RNA polymerase [Medicago truncatula]
Length = 1341
Score = 1088 bits (2813), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 526/805 (65%), Positives = 634/805 (78%), Gaps = 67/805 (8%)
Query: 8 DFEPLRELVRHHIESFDYMLDEGLSEMFDH------------------------------ 37
+F+ L+ L + HIESFD++++ G+ +F
Sbjct: 24 NFDALKVLFKPHIESFDHLIEAGMETIFKSIKLVVVHPTTFQKLINILFFFFLFSKDGIA 83
Query: 38 --------------------CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVM 77
CRQAK++Y+G+ ADV F+Y D ++RE FNFGQFP+M
Sbjct: 84 KTTRKTLYPFEASFNFLSFICRQAKLTYSGRFTADVCFKY-DDSEAILRENFNFGQFPIM 142
Query: 78 LKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRD 137
L+++RC+L+ +KLVS KEEA+EMGGYFI+NGLER R +ILPK+NYPMS VRSSF +
Sbjct: 143 LQSKRCNLRDFPPRKLVSYKEEASEMGGYFIVNGLERCIRPIILPKRNYPMSTVRSSFSE 202
Query: 138 RREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTN 197
RREGYTDKAVVIRCVR DQ+S+T+KLY+L NGS RLGFW+ G+EY+LPVGI+LKAL+DT
Sbjct: 203 RREGYTDKAVVIRCVRADQTSLTVKLYHLRNGSARLGFWIHGREYMLPVGILLKALIDTT 262
Query: 198 DLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLT-TRLQCLQHIGEHFQ 256
D EI+ +LT CY EKY+K KG VG+ LV ER KIIL EV ++S TRL+CL++IGEHFQ
Sbjct: 263 DREIYANLTSCYSEKYEKGKGVVGTQLVGERAKIILDEVCEVSKKFTRLECLEYIGEHFQ 322
Query: 257 PVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
P++ L++ES+Y VA+ V+++YIFVHL +N DKFNLLIFMLQKLFSLVD TSV DNPDSL
Sbjct: 323 PIMHELRNESHYTVADDVLKNYIFVHLENNFDKFNLLIFMLQKLFSLVDQTSVPDNPDSL 382
Query: 317 QNQEILLPGHLITIYLKE---------KLEDWLRKGKKLIQDEIENNGK------KFDFF 361
QNQE+LLPGHLITIYLK KLE+WL KGK L+ DEI+ GK KFDF
Sbjct: 383 QNQEVLLPGHLITIYLKAGRHMLTGLAKLEEWLAKGKTLLLDEIKRGGKIGKIGEKFDFR 442
Query: 362 NLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFF 421
++KKV+EKN + +G +IE+ML TGRLAT LDL Q +G T+QAERLNFLRF+S F
Sbjct: 443 KFHHVKKVLEKNHASGVGKAIESMLTTGRLATSIPLDLPQTSGLTLQAERLNFLRFLSHF 502
Query: 422 RAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGN 481
R VHRGA FAGLRTT+VRKLLPESWGFLCPVHTPDG PCGLLNHMT TCR+ S+YDS+G
Sbjct: 503 RHVHRGALFAGLRTTTVRKLLPESWGFLCPVHTPDGGPCGLLNHMTHTCRITSFYDSQGK 562
Query: 482 IRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHL 541
++++ K++ SIL +LI +GM SLPK+ GPP VL+VLLDG +VG IPS+E+EKVVAH+
Sbjct: 563 VKNYYKIKLSILNILIEIGMTQSLPKIFLPGPPEVLTVLLDGCIVGYIPSTEVEKVVAHI 622
Query: 542 RRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELI 601
R LKVS+A+VIPDDLEVGYVPLS+GGAYPGLYLFTSP +F+RPVRN+S+PS ++NIELI
Sbjct: 623 RELKVSSAAVIPDDLEVGYVPLSMGGAYPGLYLFTSPSRFIRPVRNLSIPSNGNENIELI 682
Query: 602 GPFEQVFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQ 661
GPFEQVFMEIRCPDGGDGGR+++FPATHEEIHPTGMLSVVANLTP+SDHNQSPRNMYQCQ
Sbjct: 683 GPFEQVFMEIRCPDGGDGGRKSSFPATHEEIHPTGMLSVVANLTPWSDHNQSPRNMYQCQ 742
Query: 662 MAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTG 721
MAKQTM FS Q ++ RADQKLYHLQTPQTPIVRT+ YT+Y IDE+PTGTNAIVAVLAYTG
Sbjct: 743 MAKQTMAFSSQTIQHRADQKLYHLQTPQTPIVRTSAYTEYNIDEFPTGTNAIVAVLAYTG 802
Query: 722 YDMEDAMILNKSSVDRGMCHGQIYQ 746
YDMEDAMILNKSSV+RGM HGQIYQ
Sbjct: 803 YDMEDAMILNKSSVERGMFHGQIYQ 827
Score = 243 bits (619), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 116/165 (70%), Positives = 135/165 (81%), Gaps = 4/165 (2%)
Query: 744 IYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDK 803
+QTETIDL++ G++ +R +FR++ K HS IDSDGLP+VGQMI P EPYCSIY++
Sbjct: 959 FWQTETIDLTELGSQAERSSTIFRKSNLDKGCHS-IDSDGLPHVGQMIGPDEPYCSIYNE 1017
Query: 804 TTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGV 863
TN R +KG+E ++D VAVD+K + +KANIRFRH RNPIIGDKFSSRHGQKGV
Sbjct: 1018 VTNKTRLIRKKGTEPAYIDCVAVDLKKHR---RKANIRFRHPRNPIIGDKFSSRHGQKGV 1074
Query: 864 CSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
CSQLWPDIDMPFSG TGMRPDLIINPHAFPSRMTIAMLLESVAAK
Sbjct: 1075 CSQLWPDIDMPFSGNTGMRPDLIINPHAFPSRMTIAMLLESVAAK 1119
>gi|110289329|gb|ABB47823.2| DNA-directed RNA polymerase, beta subunit family protein, expressed
[Oryza sativa Japonica Group]
Length = 1044
Score = 1072 bits (2772), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 517/837 (61%), Positives = 635/837 (75%), Gaps = 49/837 (5%)
Query: 103 MGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSSVTLK 162
MGGYFI G+ER+ R +IL K+NYPM ++R SF +R GYTDKAV+IRCV+ DQSSVT+K
Sbjct: 1 MGGYFICGGMERLVRILILQKRNYPMGLIRGSFVNRGAGYTDKAVIIRCVQDDQSSVTIK 60
Query: 163 LYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGS 222
LYYLLNGS RLGFWL G+E+LLPVGIVLKAL+DT+D EIF LTCCY + Y++ KG V +
Sbjct: 61 LYYLLNGSARLGFWLGGREFLLPVGIVLKALIDTSDREIFTSLTCCYSDHYERGKGVVST 120
Query: 223 PLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVH 282
L+ ER +IIL EV+DLSL TR +CL H+G++F+ V++G + + + VAE V++DYIFVH
Sbjct: 121 QLIGERAQIILDEVRDLSLFTRTECLLHLGKYFRSVMEGFEKDDFETVAEAVLKDYIFVH 180
Query: 283 LNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRK 342
L +N+DKFNLLIFMLQKL+++VD T+ D D+LQ QE+LLPGHLIT++LK++L+DWLRK
Sbjct: 181 LQNNHDKFNLLIFMLQKLYAIVDQTASPDKADALQYQEVLLPGHLITVFLKDRLQDWLRK 240
Query: 343 GKKLIQDEIENNGKKFDFFNLAN-------------------------------IKKVME 371
K+LI +E N K FD + + ++K +
Sbjct: 241 SKRLIVEEATKN-KSFDLNDFRDFILEGQVKGTSRVIETSSGKPCWLMRIGAQEVRKFLS 299
Query: 372 KNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFA 431
K S +G +I++M+K G++ +Q+GLDL QR G T+ AERLNF R+IS FR+VHRG+SFA
Sbjct: 300 KT-SAYVGKAIQSMIKVGKVNSQSGLDLPQRDGMTIHAERLNFHRYISHFRSVHRGSSFA 358
Query: 432 GLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTS 491
+RTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCR++S+Y+S G +DF K++ S
Sbjct: 359 KMRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRISSFYNSEGATKDFQKIKMS 418
Query: 492 ILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASV 551
++ L+G GM LP++ ++GPP VL V +DG +VG I S++IE+V
Sbjct: 419 LIARLVGAGMAQLLPRIERTGPPEVLHVHVDGCIVGSIASAKIEEV-------------- 464
Query: 552 IPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEI 611
IP+DLEVGYVPLS GGAYPGLYLFT+P +F+RPVR++ S NIELIGPFEQ FMEI
Sbjct: 465 IPEDLEVGYVPLSHGGAYPGLYLFTNPARFLRPVRSLLGLSNGGPNIELIGPFEQAFMEI 524
Query: 612 RCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSV 671
RCPDGGDGGR FPATHEEIHPT +LSVVANLTP+SDHNQSPRNMYQCQMAKQTMGF
Sbjct: 525 RCPDGGDGGRNKLFPATHEEIHPTAILSVVANLTPWSDHNQSPRNMYQCQMAKQTMGFCG 584
Query: 672 QALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILN 731
QALKFR D K +HLQTPQTPIVRT TY+KY +DE+P+GTNAIVAVL+YTGYDMEDAMILN
Sbjct: 585 QALKFRTDVKAFHLQTPQTPIVRTATYSKYCMDEFPSGTNAIVAVLSYTGYDMEDAMILN 644
Query: 732 KSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMI 791
KS+VDRGM G I+QTE IDLS D + F ++ ++ + I+SDGLP +G+ I
Sbjct: 645 KSAVDRGMFRGHIFQTECIDLS--AKSRDNVTEFFCKSNLSRDTTAAIESDGLPRIGENI 702
Query: 792 HPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIG 851
P E Y S+ + T + R KGSE +DYVAV+ N K+ QKANIR R RNPIIG
Sbjct: 703 FPNEQYYSVCNNLTGTVRPIKLKGSEPAAIDYVAVNGTNFKDRLQKANIRLRRVRNPIIG 762
Query: 852 DKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
DKFSSRHGQKGVCSQLWPDIDMPFS TGMRPDLIINPHAFPSRMTIAMLLES+AAK
Sbjct: 763 DKFSSRHGQKGVCSQLWPDIDMPFSANTGMRPDLIINPHAFPSRMTIAMLLESIAAK 819
>gi|449511582|ref|XP_004163996.1| PREDICTED: probable DNA-directed RNA polymerase I subunit
RPA2-like, partial [Cucumis sativus]
Length = 948
Score = 1066 bits (2756), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 506/726 (69%), Positives = 597/726 (82%), Gaps = 46/726 (6%)
Query: 5 KSADFEPLRELVRHHIESFDYMLDEGLS---------EMFD------------------- 36
++ D+E LREL RHHIESFD+++D GL E++D
Sbjct: 7 ENEDYEALRELFRHHIESFDHLVDAGLETLMNSIKPVEIYDSFTNKKLRIWLGKPELYPP 66
Query: 37 ----------------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKT 80
CRQAKISYTGK MADV FQY + V+RE+ NFGQFP+MLK+
Sbjct: 67 QKERNLRTIREALLPYECRQAKISYTGKFMADVCFQYDEKA--VIREKLNFGQFPIMLKS 124
Query: 81 RRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRRE 140
+ CHL+G D +KLVS EEA+EMGGYF++NGLERV R +I PK+NYP SMVR+SF DRRE
Sbjct: 125 KLCHLRGLDPKKLVSYNEEASEMGGYFVMNGLERVVRLLIAPKRNYPTSMVRNSFSDRRE 184
Query: 141 GYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLE 200
GYTDKAVVIRCVR+DQSSVT+KLYYL NGS RLGFW+QGKEYLLP+G+VLKAL+DT D E
Sbjct: 185 GYTDKAVVIRCVREDQSSVTVKLYYLRNGSARLGFWVQGKEYLLPIGVVLKALIDTTDHE 244
Query: 201 IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
I+ LT CY +K+ K KGAVG+ LV ER KIIL EV+DL+L QCL HIG+HFQPV++
Sbjct: 245 IYASLTSCYSDKHGKSKGAVGTQLVGERAKIILDEVRDLALFDHRQCLDHIGQHFQPVME 304
Query: 261 GLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQE 320
GL E + VA+ V++DYIFVHL++N DKFNLLIFM QKLFSL+D TSV DNPDSLQNQ+
Sbjct: 305 GLGKEKFSTVADAVLKDYIFVHLDNNYDKFNLLIFMAQKLFSLIDQTSVPDNPDSLQNQD 364
Query: 321 ILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGT 380
+LLPG LIT+YLKEKLEDWL+K KKL++DEI N K F+F +LA++KKVM+KNPSKQ+ +
Sbjct: 365 VLLPGQLITLYLKEKLEDWLQKVKKLLEDEISNPSKNFEFCSLAHVKKVMDKNPSKQVSS 424
Query: 381 SIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRK 440
++E MLKTGRL TQTGLDLQQRAG+TVQAERLNFLRF+S FRAVHRGASFAGLRTT+VRK
Sbjct: 425 AVENMLKTGRLVTQTGLDLQQRAGFTVQAERLNFLRFVSHFRAVHRGASFAGLRTTTVRK 484
Query: 441 LLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVG 500
LLPESWGFLCPVHTPDGEPCGLLNH+TSTCR+ S+++S+G +RDF K+RTSIL VLI VG
Sbjct: 485 LLPESWGFLCPVHTPDGEPCGLLNHLTSTCRITSHFNSQGKVRDFYKIRTSILSVLIAVG 544
Query: 501 MIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGY 560
MIPSLPKLV+ G P L+VLLDGR+VG I S+E+EK+VAHLRRLKV + VIPDDLEVGY
Sbjct: 545 MIPSLPKLVQMGLPDFLNVLLDGRIVGYISSNEVEKIVAHLRRLKVLSPHVIPDDLEVGY 604
Query: 561 VPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGG 620
VPLS+ GAYPGLYLFTSP +FVRPV+N+S+ E++ NIELIGPFEQVFMEIRCPDGGDGG
Sbjct: 605 VPLSISGAYPGLYLFTSPSRFVRPVKNLSISPEDNHNIELIGPFEQVFMEIRCPDGGDGG 664
Query: 621 RRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQ 680
R++ FPATHEEIHPTGMLSVVANLTP+SDHNQSPRNMYQCQMAKQTM FS+QA+++RADQ
Sbjct: 665 RKDEFPATHEEIHPTGMLSVVANLTPWSDHNQSPRNMYQCQMAKQTMAFSLQAIRYRADQ 724
Query: 681 KLYHLQ 686
KLYHLQ
Sbjct: 725 KLYHLQ 730
>gi|302825794|ref|XP_002994479.1| hypothetical protein SELMODRAFT_270143 [Selaginella moellendorffii]
gi|300137562|gb|EFJ04457.1| hypothetical protein SELMODRAFT_270143 [Selaginella moellendorffii]
Length = 1172
Score = 963 bits (2489), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 464/872 (53%), Positives = 631/872 (72%), Gaps = 37/872 (4%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CRQ +SYTG L + LD GS + + G+ P+MLK+ CHL+G QKL+SLK
Sbjct: 115 CRQGFLSYTGALNIQL---ILDYGSMTRHHQLSLGKLPIMLKSSLCHLRGLSPQKLISLK 171
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
EE EMGGYFI+ G+ER+ R +I+PK+N+ +++ R++F++R G++D +++RCVR DQ+
Sbjct: 172 EEGTEMGGYFIVKGIERIIRMLIVPKRNHIIAIRRNAFQNRGAGFSDIGLMMRCVRPDQT 231
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
T+KLYYL +G+ RLGF ++ +E+++PVGI+LKA +DT+D EIF L+ + + ++ K
Sbjct: 232 GSTIKLYYLHHGTARLGFVIRRQEFVIPVGIILKAFMDTSDREIFEQLSGIHVQGQEQSK 291
Query: 218 GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRD 277
GAVGS L+S+R +II+ E Q TRL CL++I E V+R
Sbjct: 292 GAVGSQLISQRARIIIEETQRQPCLTRLDCLRYI--------------------EDVLRR 331
Query: 278 YIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLE 337
++FVHL++ DKFNLLI ML KLF++VD ++ D+ D+LQ+QE+LLPGHL+ IYLK++LE
Sbjct: 332 FVFVHLDNFRDKFNLLIHMLHKLFAVVDGSASIDSSDTLQHQELLLPGHLMNIYLKDRLE 391
Query: 338 DWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGL 397
DWL + K+L+Q E++ ++FD + A + K++EKN + IG IE +L TG + +Q+ +
Sbjct: 392 DWLYRCKRLLQREMQLK-EEFDLSDHAKVLKIVEKNNAVDIGKRIEYLLSTGNIQSQSHM 450
Query: 398 DLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDG 457
DLQQ G++V AE+LNF RFIS FR+VHRGA FA RTTSVRKLLPESWGFLCPVHTPDG
Sbjct: 451 DLQQANGFSVVAEKLNFFRFISHFRSVHRGAFFARQRTTSVRKLLPESWGFLCPVHTPDG 510
Query: 458 EPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVL 517
EPCGLL H++S C++++ D + +D + +I VL +GM+ P L SGPP L
Sbjct: 511 EPCGLLTHLSSLCKISTDLDQNNHPKDPKVIHRTIATVLAQLGMVSISPLLALSGPPKYL 570
Query: 518 SVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTS 577
+VLLDG V+G +P I + V+HLR LKV P DLE+GYVP + GAYPGL+L+T+
Sbjct: 571 AVLLDGCVLGYMPVGNIPQTVSHLRSLKV------PIDLEIGYVPCTYAGAYPGLFLYTT 624
Query: 578 PPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRR-NAFPATHEEIHPTG 636
P +F+RPV+ + ++ IELI FEQ +MEI CPDGG+ GR +A PATH E+HPT
Sbjct: 625 PSRFLRPVKQL-----DTGAIELISAFEQAYMEIACPDGGNCGRTPSAPPATHIELHPTA 679
Query: 637 MLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTN 696
MLSVVA+ TP+SDHNQSPRNMYQCQM KQT+GF+ QALKFR D K+Y+LQ PQ+P+ R
Sbjct: 680 MLSVVASSTPWSDHNQSPRNMYQCQMGKQTLGFASQALKFRTDHKMYNLQNPQSPVARNV 739
Query: 697 TYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDG 756
Y KY +DE+P GTNA+VAVLAYTG+DMEDAMI+NKSS++RG+ HGQIY+TE +DLS
Sbjct: 740 NYKKYNMDEFPLGTNAVVAVLAYTGFDMEDAMIMNKSSMERGLAHGQIYKTEHVDLSLLQ 799
Query: 757 NKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGS 816
K D LF R +++H+ +D DGLP++GQ +H G+PYCS+ + T + + K +
Sbjct: 800 KKSDGIVNLFSRPTGKRNIHNFLDVDGLPHIGQTMHNGDPYCSVLNTMTGDAKLHKLKAA 859
Query: 817 ESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFS 876
E+V +D V + + + ++ QK ++FRH RNP+IGDKFSSRHGQKG+ SQLWPDIDMPFS
Sbjct: 860 ENVVIDSV-IAIGHGRDPLQKIAVKFRHDRNPVIGDKFSSRHGQKGILSQLWPDIDMPFS 918
Query: 877 GVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
VTGMRPD+IINPHAFPSRMTI ML+ES+AAK
Sbjct: 919 AVTGMRPDIIINPHAFPSRMTIGMLMESMAAK 950
>gi|168042961|ref|XP_001773955.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162674799|gb|EDQ61303.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1199
Score = 951 bits (2457), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 485/968 (50%), Positives = 648/968 (66%), Gaps = 84/968 (8%)
Query: 3 RKKSADFEPLRELVRHHIESFDYMLDEGLSEMF--------------------------- 35
+++ D L +L + H ESFDY ++ GL E
Sbjct: 33 KEEELDCSSLYDLTKPHTESFDYFVERGLEEAVRRLQPIELKHPISGTSLRLWVEKPNVS 92
Query: 36 -----------------DHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVML 78
CR A ++Y G AD+ Q+ + VVR ++G+ PVM+
Sbjct: 93 PPMKDLGSQALDQRLLPSECRLAGLTYRGIFTADICMQWNNG--VVVRHNISYGKMPVMV 150
Query: 79 KTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDR 138
K+ CHL+G + ++LV+ KEEA EMGGYFI NG ER+ R +I+PK+NY + + R+S+++R
Sbjct: 151 KSSVCHLRGLNQKQLVAAKEEATEMGGYFICNGNERIIRLLIMPKRNYVVGVKRTSYKNR 210
Query: 139 REGYTDKAVVI-RCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTN 197
Y+DK V+I RCVR DQS+VT+++YY+ GS LGF ++ +E+L+PVGI+LKAL+++N
Sbjct: 211 GPSYSDKGVMISRCVRPDQSAVTMRMYYMNYGSASLGFSVRRQEFLIPVGIILKALIESN 270
Query: 198 DLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQP 257
+ EI+ L + K KGA+GS VS+R KIIL EV+ LSL TR CLQ +G
Sbjct: 271 EYEIYEQLMSIQSDS-KAMKGALGSQFVSQRAKIILEEVRQLSLFTRHDCLQFLG----- 324
Query: 258 VIDGLQSESYY----AVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNP 313
GL Y+ +V E V+ DYI VHL++ DKFNLL+FMLQKLF+LVD + DN
Sbjct: 325 ---GL--TCYFLLVKSVGEQVLNDYILVHLDNPLDKFNLLVFMLQKLFALVDGMAAPDNA 379
Query: 314 DSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDF-----FNLANIKK 368
D+LQN EILLPGHL+TI +K++++DWL + + + E++ + D + +++K
Sbjct: 380 DALQNHEILLPGHLLTIVVKDRIQDWLLRVQGQLLKEMKEKPAENDLQQPIDVTVKHVQK 439
Query: 369 VMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGA 428
V EK P+ + +E +L TG L +Q+GLDL Q G+T+ AE+LNFLR++S FR+VHRGA
Sbjct: 440 VFEKVPASDVSKKVEYLLNTGNLVSQSGLDLNQVGGFTLVAEKLNFLRYLSHFRSVHRGA 499
Query: 429 SFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKM 488
FA LRTT+VRKLLPESWGF+CPVHTPDG PCGLLNH+T+ C+++S D+RGN +D +
Sbjct: 500 FFATLRTTTVRKLLPESWGFMCPVHTPDGSPCGLLNHLTAACQISSDLDARGNKKDPLAI 559
Query: 489 RTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSA 548
R S+ +V++ +G++P LPKL PP L+VLLDG V+G + + I ++ HLRRLKV
Sbjct: 560 RKSVTKVMVNLGLVPVLPKLSNMAPPEYLTVLLDGCVIGHLATGAIPSIIEHLRRLKVVD 619
Query: 549 ASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVF 608
S +P D+E+ Y+P + G+YPGLYL T+P +F R V+ + ++ELIGP EQV
Sbjct: 620 GSEVPADMEIAYIPCTSAGSYPGLYLATTPSRFTRTVKQMF----GDGSLELIGPLEQV- 674
Query: 609 MEIRCPDGGDGGRRNAFPA-THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTM 667
+ CP GG P THEEI+ T LSVVA+LTP+SDHNQSPRNMYQCQM KQTM
Sbjct: 675 NQFLCP----GGNEPIGPKPTHEEINATAFLSVVASLTPWSDHNQSPRNMYQCQMGKQTM 730
Query: 668 GFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDA 727
GF QAL+ RAD K+Y +QTPQ PI +TN + KY ++++PTGTNAIVAVLAYTG+DMEDA
Sbjct: 731 GFPAQALQCRADNKMYRIQTPQMPIAQTNAWNKYHMNQFPTGTNAIVAVLAYTGFDMEDA 790
Query: 728 MILNKSSVDRGMCHGQIYQTETIDLSD-----DG--NKVDRGQKLFRRNKDAKSLHSVID 780
MILNKSSV+RG+ +GQ+Y++ETIDL++ DG N R + R + A + ID
Sbjct: 791 MILNKSSVERGLHYGQVYKSETIDLTELRQRGDGVTNVFARSGAMARFKEQADKSANFID 850
Query: 781 SDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANI 840
DGLPYVGQ + G+PYCS+ +K T + + KGSE+ VDYVA SK+ QK I
Sbjct: 851 IDGLPYVGQTLTEGDPYCSVVNKMTGQSKISKLKGSEAAIVDYVAAINTGSKDPLQKVTI 910
Query: 841 RFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAM 900
R RH R P IGDKFSSRHGQKGVCSQLWPD+DMPFS VTGMRPD+IINPHAFPSRMTI M
Sbjct: 911 RTRHPRYPQIGDKFSSRHGQKGVCSQLWPDVDMPFSAVTGMRPDIIINPHAFPSRMTIGM 970
Query: 901 LLESVAAK 908
LLES+AAK
Sbjct: 971 LLESMAAK 978
>gi|302759705|ref|XP_002963275.1| hypothetical protein SELMODRAFT_405033 [Selaginella moellendorffii]
gi|300168543|gb|EFJ35146.1| hypothetical protein SELMODRAFT_405033 [Selaginella moellendorffii]
Length = 1126
Score = 816 bits (2108), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 414/872 (47%), Positives = 577/872 (66%), Gaps = 76/872 (8%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CRQ +SYTG L + LD GS + + G+ P+MLK+ CHL+G QKL+SLK
Sbjct: 108 CRQGFLSYTGALNIQL---ILDYGSMTRYHQLSLGKLPIMLKSSLCHLRGLSPQKLISLK 164
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
EE EMGGYFI+ G+ER+ R +I+PK+N+ +++ R++F++R G++D +++RCVR DQ+
Sbjct: 165 EEGTEMGGYFIVKGIERIIRKLIVPKRNHIIAIRRNAFQNRGAGFSDIGLMMRCVRPDQT 224
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
T+KLYYL +G+ RLGF ++ +E+++PVGI+LKA +DT+D EIF L+ + + ++ K
Sbjct: 225 GSTIKLYYLHHGTARLGFVIRRQEFVIPVGIILKAFMDTSDREIFEQLSGIHVQGQEQSK 284
Query: 218 GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRD 277
GAVGS L+S+R +II+ E Q TRL CL++IGE F+ ++ L S S V E V+R
Sbjct: 285 GAVGSQLISQRARIIIEETQRQPCLTRLDCLRYIGETFRTPLEALSSMSNAEVGEDVLRR 344
Query: 278 YIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLE 337
++FVHL++ DKFNLLI ML KLF++VD ++ D+ D+LQ+QE+LLPGHL+ IYLK++LE
Sbjct: 345 FVFVHLDNFRDKFNLLIHMLHKLFAVVDGSASIDSSDTLQHQELLLPGHLMNIYLKDRLE 404
Query: 338 DWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGL 397
DWL + K+L+Q E++ ++FD + A + K++EKN + IG IE +L TG + +Q+ +
Sbjct: 405 DWLYRCKRLLQREMQLK-EEFDLSDHAKVLKIVEKNNAVDIGKRIEYLLSTGNIQSQSHM 463
Query: 398 DLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDG 457
DLQQ G++V AE+LNF RF
Sbjct: 464 DLQQANGFSVVAEKLNFFRF---------------------------------------- 483
Query: 458 EPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVL 517
++H S R A F++ RT+ +R L+ P G P L
Sbjct: 484 -----ISHFRSVHRGAF----------FARQRTTSVRKLLPESWGFLCPVHTPDGEPCGL 528
Query: 518 SVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTS 577
L S + K+ L + +P DLE+GYVP + GAYPGL+L+T+
Sbjct: 529 LTHL----------SSLCKISTDLDQNNHPKDPKVPIDLEIGYVPCTYAGAYPGLFLYTT 578
Query: 578 PPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRR-NAFPATHEEIHPTG 636
P +F+RPV+ + ++ IELI FEQ +MEI CPDGG+ GR +A PATH E+HPT
Sbjct: 579 PSRFLRPVKQL-----DTGAIELISAFEQAYMEIACPDGGNCGRTPSAPPATHIELHPTA 633
Query: 637 MLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTN 696
MLSVVA+ TP+SDHNQSPRNMYQCQM KQT+GF+ QALKFR D K+Y+LQ PQ+P+ R
Sbjct: 634 MLSVVASSTPWSDHNQSPRNMYQCQMGKQTLGFASQALKFRTDHKMYNLQNPQSPVARNV 693
Query: 697 TYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDG 756
Y KY +DE+P GTNA+VAVLAYTG+DMEDAMI+NKSS++RG+ HGQIY+TE +DLS
Sbjct: 694 NYKKYNMDEFPLGTNAVVAVLAYTGFDMEDAMIMNKSSMERGLAHGQIYKTEHVDLSLLQ 753
Query: 757 NKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGS 816
K D LF R +++H+ +D DGLP++GQ +H G+PYCS+ + T + + K +
Sbjct: 754 KKSDGIVNLFSRPTGKRNIHNFLDVDGLPHIGQTMHNGDPYCSVLNTMTGDAKLHKLKAA 813
Query: 817 ESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFS 876
E+V +D V + + + ++ QK ++FRH RNP+IGDKFSSRHGQKG+ SQLWPDIDMPFS
Sbjct: 814 ENVVIDSV-IAIGHGRDPLQKIAVKFRHDRNPVIGDKFSSRHGQKGILSQLWPDIDMPFS 872
Query: 877 GVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
VTGMRPD+IINPHAFPSRMTI ML+ES+AAK
Sbjct: 873 AVTGMRPDIIINPHAFPSRMTIGMLMESMAAK 904
>gi|22128702|gb|AAM92814.1| putative DNA-directed RNA polymerase I subunit, 5'-partial [Oryza
sativa Japonica Group]
Length = 855
Score = 815 bits (2105), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 402/670 (60%), Positives = 487/670 (72%), Gaps = 71/670 (10%)
Query: 270 VAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
VAE V++DYIFVHL +N+DKFNLLIFMLQKL+++VD T+ D D+LQ QE+LLPGHLIT
Sbjct: 1 VAEAVLKDYIFVHLQNNHDKFNLLIFMLQKLYAIVDQTASPDKADALQYQEVLLPGHLIT 60
Query: 330 IYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLAN------------------------ 365
++LK++L+DWLRK K+LI +E N K FD + +
Sbjct: 61 VFLKDRLQDWLRKSKRLIVEEATKN-KSFDLNDFRDFILEGQVKGTSRVIETSSGKPCWL 119
Query: 366 -------IKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFI 418
++K + K S +G +I++M+K G++ +Q+GLDL QR G T+ AERLNF R+I
Sbjct: 120 MRIGAQEVRKFLSKT-SAYVGKAIQSMIKVGKVNSQSGLDLPQRDGMTIHAERLNFHRYI 178
Query: 419 SFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDS 478
S FR+VHRG+SFA +RTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCR++S+Y+S
Sbjct: 179 SHFRSVHRGSSFAKMRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRISSFYNS 238
Query: 479 RGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVV 538
G +DF K++ S++ L+G GM LP++ ++GPP VL V +DG +VG I S++IE+V
Sbjct: 239 EGATKDFQKIKMSLIARLVGAGMAQLLPRIERTGPPEVLHVHVDGCIVGSIASAKIEEV- 297
Query: 539 AHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNI 598
IP+DLEVGYVPLS GGAYPGLYLFT+P +F+RP
Sbjct: 298 -------------IPEDLEVGYVPLSHGGAYPGLYLFTNPARFLRPA------------- 331
Query: 599 ELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMY 658
FMEIRCPDGGDGGR FPATHEEIHPT +LSVVANLTP+SDHNQSPRNMY
Sbjct: 332 ---------FMEIRCPDGGDGGRNKLFPATHEEIHPTAILSVVANLTPWSDHNQSPRNMY 382
Query: 659 QCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLA 718
QCQMAKQTMGF QALKFR D K +HLQTPQTPIVRT TY+KY +DE+P+GTNAIVAVL+
Sbjct: 383 QCQMAKQTMGFCGQALKFRTDVKAFHLQTPQTPIVRTATYSKYCMDEFPSGTNAIVAVLS 442
Query: 719 YTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSV 778
YTGYDMEDAMILNKS+VDRGM G I+QTE IDLS D + F ++ ++ +
Sbjct: 443 YTGYDMEDAMILNKSAVDRGMFRGHIFQTECIDLS--AKSRDNVTEFFCKSNLSRDTTAA 500
Query: 779 IDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKA 838
I+SDGLP +G+ I P E Y S+ + T + R KGSE +DYVAV+ N K+ QKA
Sbjct: 501 IESDGLPRIGENIFPNEQYYSVCNNLTGTVRPIKLKGSEPAAIDYVAVNGTNFKDRLQKA 560
Query: 839 NIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTI 898
NIR R RNPIIGDKFSSRHGQKGVCSQLWPDIDMPFS TGMRPDLIINPHAFPSRMTI
Sbjct: 561 NIRLRRVRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSANTGMRPDLIINPHAFPSRMTI 620
Query: 899 AMLLESVAAK 908
AMLLES+AAK
Sbjct: 621 AMLLESIAAK 630
>gi|213407890|ref|XP_002174716.1| DNA-directed RNA polymerase I subunit RPA2 [Schizosaccharomyces
japonicus yFS275]
gi|212002763|gb|EEB08423.1| DNA-directed RNA polymerase I subunit RPA2 [Schizosaccharomyces
japonicus yFS275]
Length = 1170
Score = 747 bits (1929), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 397/889 (44%), Positives = 560/889 (62%), Gaps = 61/889 (6%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR+ +Y +++ ++F + P E G P+M+++ RCHL+G +L++ K
Sbjct: 106 CRERLCTYKARMV--LKFSWRVNDGPWQSEMREVGNLPIMVRSNRCHLEGLSPAELIAHK 163
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
EE+ EMGGYF++NG+E++ R +ILPK+N+P++++R SF +R YT + IRCVR DQS
Sbjct: 164 EESEEMGGYFVVNGIEKIVRMLILPKRNHPVALIRPSFGNRGTMYTQYGISIRCVRPDQS 223
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
S+T L+YL NG F + EYL+P ++LKAL++T+D EIF + E
Sbjct: 224 SLTNTLHYLSNGVAMFRFHWRKNEYLIPSMMILKALIETSDKEIFEGIVGQETE------ 277
Query: 218 GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRD 277
+ +++RV+++L + L+T+ Q LQ++G F+ V+ + + V T++R
Sbjct: 278 ----NTFLTDRVELMLRAYKSYGLSTQTQSLQYLGSKFRVVLGLAEDLTDVEVGRTLLRR 333
Query: 278 YIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLE 337
+ V+L DN DKF +L+FM++KL++LV +DNPDS Q+QEILL G L +KEK++
Sbjct: 334 VVLVNLPDNRDKFRMLLFMIRKLYALVAGECCADNPDSPQHQEILLGGFLFAQIIKEKID 393
Query: 338 DWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGL 397
DWL + IQ ++ DF + + +V K S IGT ++ L TG L + TGL
Sbjct: 394 DWLTSIRAQIQQDVRRGAAGIDFSDKKYLSRVFSKVNS-DIGTRLQYFLSTGNLVSNTGL 452
Query: 398 DLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDG 457
DLQQ GYTV AE+LNF RF+S FR VHRGA FA L+TTSVRKLLPE+WGFLCPVHTPDG
Sbjct: 453 DLQQATGYTVVAEKLNFYRFLSHFRMVHRGAFFAELKTTSVRKLLPEAWGFLCPVHTPDG 512
Query: 458 EPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVL 517
PCGLLNH+ S C + + NI +L+ +G+ P P V + P V
Sbjct: 513 SPCGLLNHLASKCEIVTSPIDVSNIP----------ALLLSLGVDP--PTAVVANPDWV- 559
Query: 518 SVLLDGRVVGVIPSSEIEKVVAHLRRLKVSA-------ASVIPDDLEVGYVPLSLGGAYP 570
SV LDG++VG + V A LR++KV ++P LE+G VP S GG +P
Sbjct: 560 SVQLDGKIVGWCTHKLAKHVAAVLRQMKVRGDLASDGKTPLVPLSLEIGLVPPSHGGQFP 619
Query: 571 GLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFP--AT 628
GL+LF+ + VRPV+ ++ + ++ +GPFEQV+M+I C R P T
Sbjct: 620 GLFLFSEQARMVRPVKYLA-----TGKLDNVGPFEQVYMDIACFP------REIVPKITT 668
Query: 629 HEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTP 688
H E PT +LS+VAN+TP+SD NQSPRNMYQCQM KQTMG A+++R D K+Y LQT
Sbjct: 669 HVEYSPTNVLSIVANMTPFSDFNQSPRNMYQCQMGKQTMGTPGTAIRYRTDNKMYRLQTG 728
Query: 689 QTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTE 748
QTPIVR + YG+D YP G NA+VAV++YTGYDMEDAMILNKS+ +RG +G +Y+++
Sbjct: 729 QTPIVRPRLHDSYGLDHYPNGMNAVVAVISYTGYDMEDAMILNKSAHERGFGYGTVYKSQ 788
Query: 749 TIDLSDDGNKVDRGQKLFRR------NKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYD 802
IDLS+ K RG+ + + + +D DGLPY+G + GEP + YD
Sbjct: 789 KIDLSE---KRRRGEPVVHHFGFAPGSTPRREWLEKLDMDGLPYIGTKVEDGEPIAAYYD 845
Query: 803 KTTNSWRTNSRKGSESVFVDYVAV---DMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHG 859
++T + G+E FVD V V D+ +S+ Q +I+FR+TR+PIIGDKFSSRHG
Sbjct: 846 ESTGHNFVQTYHGTEPGFVDEVRVLGNDVGDSEC--QVLHIKFRNTRSPIIGDKFSSRHG 903
Query: 860 QKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
QKG+CSQ WP +DMPF+ +G++PD+IINPHAFPSRMTI M +ES+A K
Sbjct: 904 QKGICSQKWPTVDMPFTE-SGIQPDIIINPHAFPSRMTIGMFIESLAGK 951
>gi|384492834|gb|EIE83325.1| hypothetical protein RO3G_08030 [Rhizopus delemar RA 99-880]
Length = 1150
Score = 743 bits (1919), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 386/878 (43%), Positives = 561/878 (63%), Gaps = 47/878 (5%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR+ +Y G+L + ++ + PV + + G P+M+++ RC+L+ + L++
Sbjct: 115 CRERLCTYRGRLQGKLCWRVNNG--PVQSDIRDLGLVPIMIRSNRCNLKDMYPKDLIAHN 172
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
EE+ EMGGYFI+NG+E++ R +I+P++N+ ++VR+SF++R Y+ IRC R+DQ+
Sbjct: 173 EESEEMGGYFIVNGIEKLIRLLIVPRRNHVTAIVRNSFQNRGPTYSTFGCAIRCARRDQT 232
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
++T ++YL +G+V F + +EYLLP +V K+L+D +D EIF+ L +
Sbjct: 233 TLTNTIHYLTDGNVMFRFAWRKQEYLLPAMLVFKSLIDCSDKEIFDALC----------Q 282
Query: 218 GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRD 277
G + +++R++++L + +L TR QCL +IGE F+ + + + + E +++
Sbjct: 283 GDTSNTFLTDRIELLLRSFKIYNLFTRDQCLNYIGEKFRVTMGLDEDLTNKEIGEALVKK 342
Query: 278 YIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLE 337
IFVHL+ N DKFNLL FM++KL++LV V+DNPD+ Q+QE+LL GHL T+ +KEK+
Sbjct: 343 LIFVHLDSNRDKFNLLAFMIRKLYALVSGECVADNPDAPQHQEVLLGGHLYTMIIKEKIY 402
Query: 338 DWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGL 397
DWL+ K ++ ++ N K DFFN + K S IG+ + L TG L ++TGL
Sbjct: 403 DWLQAVKMQVRTDLRINPAKVDFFNNTYFQNAYRKVNS-DIGSKLSYFLATGNLVSKTGL 461
Query: 398 DLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDG 457
DLQQ +G+T+ AE+LNF R+++ FR +HRGA FA L+TTSVRKLLPE+WGFLCPVHTPDG
Sbjct: 462 DLQQFSGFTIVAEKLNFFRYLAHFRCIHRGAFFAELKTTSVRKLLPEAWGFLCPVHTPDG 521
Query: 458 EPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVL 517
PCGLLNH+ C+V I + ++T I R+L +G+ S + G P
Sbjct: 522 SPCGLLNHLAHKCKV---------INEPLDIKT-IPRLLASLGISQSFLHTI--GRPGDN 569
Query: 518 SVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTS 577
V+LDG++VG EKV L+ +V+ IP DLE+ +VP + GG YPGLYLF+S
Sbjct: 570 VVMLDGKIVGWCTPKTAEKVAQSLKVWRVNGEKGIPLDLEIAHVPNTYGGEYPGLYLFSS 629
Query: 578 PPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPA--THEEIHPT 635
P + +RPV+ + + ++IG FEQV+M+I C D P TH+E PT
Sbjct: 630 PARMMRPVKYLG-----NGKTDMIGTFEQVYMDIACMDD------EVVPGVTTHQEFTPT 678
Query: 636 GMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRT 695
+LS++AN TP+SD NQSPRNMYQCQM KQTMG R D K+Y +Q+ QTP+VRT
Sbjct: 679 NILSIIANQTPFSDFNQSPRNMYQCQMGKQTMGTPSTVFNHRTDNKMYRIQSSQTPVVRT 738
Query: 696 NTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDD 755
Y +YG+D +P G NAIVAV++YTGYDMEDAMILNKS+ +RG +G +Y++E +DL+
Sbjct: 739 ELYNEYGLDGWPQGNNAIVAVISYTGYDMEDAMILNKSAHERGFGYGTVYKSEVVDLN-- 796
Query: 756 GNKVDRGQKL-FRRNKD---AKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTN 811
RG+ + +R D K + + DGLP++G + +P C D++T
Sbjct: 797 -QYRSRGEAITYRFGLDPIKGKKYKNKLGPDGLPHIGAHLVADDPLCCYIDESTGKDVIK 855
Query: 812 SRKGSESVFVDYVAVDMKNSKNLP-QKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPD 870
KG E +VD V V +S N QK +I+ R TR+P+IGDKFSSRHGQKGVCSQ +P
Sbjct: 856 KYKGPEDAYVDEVRVLGDDSGNGELQKVHIKLRITRSPVIGDKFSSRHGQKGVCSQKYPA 915
Query: 871 IDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
IDMPF+ +GM+PD+IINPHAFPSRMTI M +ES+A K
Sbjct: 916 IDMPFTE-SGMQPDVIINPHAFPSRMTIGMFVESIAGK 952
>gi|395329846|gb|EJF62231.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Dichomitus squalens LYAD-421 SS1]
Length = 1230
Score = 742 bits (1916), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 401/885 (45%), Positives = 564/885 (63%), Gaps = 51/885 (5%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
R+ SY G++ A + +Q D PV + + G P+M+++ RC+++G S LV
Sbjct: 132 ARERLTSYRGRMTAKICWQVNDG--PVEVQMRDCGLLPIMVRSARCNVRGMSSADLVKHH 189
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
EE E GGYFI+NG ER+ R +ILP++++ +S+VR SF +R YT AV IRCVR DQ+
Sbjct: 190 EEPEEFGGYFIINGNERLIRYLILPRRHHVISLVRPSFVNRGPSYTPYAVQIRCVRPDQT 249
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
VT L+YL NGS L F + +EY++P+ ++LKALV +D EIF + + Y+
Sbjct: 250 GVTNTLHYLSNGSAMLRFSWRKQEYVIPIMLILKALVSASDKEIFEGVMM---QDYEDT- 305
Query: 218 GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRD 277
+S+RV+++L + SL T QCLQ++G+ F+ V++ + + A+ +I
Sbjct: 306 ------FLSDRVELLLRSFKMYSLYTGDQCLQYLGDKFRVVVNMPEDWTNQAIGVWLINK 359
Query: 278 YIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLE 337
+ VHL + DKF +L+FML+KLF+LV + DNPDS Q+QE+LLPG L + +KE+LE
Sbjct: 360 VVLVHLQNPRDKFRMLLFMLRKLFALVSKSCSVDNPDSPQHQEVLLPGTLYGMIIKERLE 419
Query: 338 DWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGL 397
+ L ++ I ++ N+ DFF+ IKKV+ + S IG + L TG L + TGL
Sbjct: 420 EALNSFREGIALDVRNSNPAVDFFDKRYIKKVLSRT-SYDIGAKMSNFLATGNLVSPTGL 478
Query: 398 DLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDG 457
DLQQ +G+T+ AE+LN++R+IS FR++HRGA FA L+TT+VRKLLPE+WGFLCPVHTPDG
Sbjct: 479 DLQQASGFTIVAEKLNWMRYISHFRSIHRGAFFAELKTTTVRKLLPEAWGFLCPVHTPDG 538
Query: 458 EPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGV-GMIPSLPKLVKSGPPAV 516
PCGLLNH++ TCR+ + S + + L L+ GM + V
Sbjct: 539 SPCGLLNHLSRTCRIVT-----------SPLAVAHLPALLAAHGMTQAFAPSVDG--RRN 585
Query: 517 LSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFT 576
L V LDGR++G PS+ +++ LR K +P DLE+G+VP+S GG YPGLYLF+
Sbjct: 586 LCVQLDGRLIGWAPSAVCKQLATSLRIWKTEGKHSVPLDLEIGFVPVSKGGQYPGLYLFS 645
Query: 577 SPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRNAFPATHEEIHPT 635
S + +RPV+ ++ ++ +G FEQV+M+I C P + G +TH E PT
Sbjct: 646 SRSRMMRPVKYLANGRDDQ-----VGSFEQVYMDIACTPAEIEDGV-----STHVEHAPT 695
Query: 636 GMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRT 695
LS++ANLTP+SD NQSPRN+YQCQM KQTMG AL+ R D KLY LQT QTP+VR
Sbjct: 696 NFLSILANLTPFSDFNQSPRNIYQCQMGKQTMGTPATALQHRTDNKLYRLQTGQTPVVRP 755
Query: 696 NTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSD- 754
+ YG+D +P GTNAIVAV++YTGYDMEDAMILNKS+ +RG +G +Y+ T+DL +
Sbjct: 756 ALHNTYGMDSFPNGTNAIVAVISYTGYDMEDAMILNKSAHERGFGYGTVYKAYTVDLQEL 815
Query: 755 DGNKVDRGQKLFR-------RNKDAKSLHS---VIDSDGLPYVGQMIHPGEPYCSIYDKT 804
G++ G R ++ + H+ ++D+DGLP VG ++PG+P + D T
Sbjct: 816 TGSRRQTGPPTLHFGVGPEIRMEEGPNQHAAAKLVDADGLPIVGSRLNPGDPIAAYVDDT 875
Query: 805 TNSWRTNSRKGSESVFVDYVAVDMKNSKNLP-QKANIRFRHTRNPIIGDKFSSRHGQKGV 863
T + KG E +VD V + ++ + QK NI R TR P+IGDKFSSRHGQKGV
Sbjct: 876 TGRTKFVKYKGDEVAYVDTVRLLGSDAGDQELQKINITLRITRAPVIGDKFSSRHGQKGV 935
Query: 864 CSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
CSQ WP IDMPF+ +GM+PD+IINPHAFPSRMTI ML+ES+A K
Sbjct: 936 CSQKWPAIDMPFT-ESGMQPDVIINPHAFPSRMTIGMLVESMAGK 979
>gi|384499993|gb|EIE90484.1| hypothetical protein RO3G_15195 [Rhizopus delemar RA 99-880]
Length = 1150
Score = 741 bits (1913), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 384/878 (43%), Positives = 561/878 (63%), Gaps = 47/878 (5%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR+ +Y G+L + ++ + PV + + G P+M+++ RC+L+ + L++
Sbjct: 115 CRERLCTYRGRLQGKLCWRVNNG--PVQSDIRDLGLVPIMIRSNRCNLKDMYPKDLIAHN 172
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
EE+ EMGGYFI+NG+E++ R +I+P++N+ +++R+SF++R Y+ IRC R+DQ+
Sbjct: 173 EESEEMGGYFIVNGIEKLIRLLIVPRRNHVTAIIRNSFQNRGPTYSTFGCAIRCARRDQT 232
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
++T ++YL +G+V F + +EYLLP +V K+L+D +D EIF+ L +
Sbjct: 233 TLTNTIHYLTDGNVMFRFAWRKQEYLLPAMLVFKSLIDCSDKEIFDALC----------Q 282
Query: 218 GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRD 277
G + +++R++++L + +L TR QCL +IGE F+ + + + + E +++
Sbjct: 283 GDTSNTFLTDRIELLLRSFKIYNLFTRDQCLNYIGEKFRVTMGLDEDLTNKEIGEALVKK 342
Query: 278 YIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLE 337
IFVHL+ N DKFNLL FM++KL++LV V+DNPD+ Q+QE+LL GHL T+ +KEK+
Sbjct: 343 LIFVHLDSNRDKFNLLAFMIRKLYALVSGECVADNPDAPQHQEVLLGGHLYTMIIKEKIY 402
Query: 338 DWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGL 397
DWL+ K ++ ++ N K DFFN + K S IG+ + L TG L ++TGL
Sbjct: 403 DWLQAVKMQVRTDLRINPAKVDFFNNTYFQNAYRKVNS-DIGSKLSYFLATGNLVSKTGL 461
Query: 398 DLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDG 457
DLQQ +G+T+ AE+LNF R+++ FR +HRGA FA L+TTSVRKLLPE+WGFLCPVHTPDG
Sbjct: 462 DLQQFSGFTIVAEKLNFFRYLAHFRCIHRGAFFAELKTTSVRKLLPEAWGFLCPVHTPDG 521
Query: 458 EPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVL 517
PCGLLNH+ C+V I + ++ +I R+L +G+ S + G P
Sbjct: 522 SPCGLLNHLAHKCKV---------INEPLDVK-AIPRLLASLGISQSFLHTI--GRPGDN 569
Query: 518 SVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTS 577
V+LDG++VG EKV L+ +V+ IP DLE+ +VP + GG YPGLYLF+S
Sbjct: 570 VVMLDGKIVGWCTPKTAEKVAQSLKVWRVNGEKGIPLDLEIAHVPNTYGGEYPGLYLFSS 629
Query: 578 PPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPA--THEEIHPT 635
P + +RPV+ + + ++IG FEQV+M+I C D P TH+E PT
Sbjct: 630 PARMMRPVKYLG-----NGKTDMIGTFEQVYMDIACMDD------EVVPGVTTHQEFTPT 678
Query: 636 GMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRT 695
+LS++AN TP+SD NQSPRNMYQCQM KQTMG R D K+Y +Q+ QTP+VRT
Sbjct: 679 NILSIIANQTPFSDFNQSPRNMYQCQMGKQTMGTPSTVFNHRTDNKMYRIQSSQTPVVRT 738
Query: 696 NTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDD 755
Y +YG+D +P G NAIVAV++YTGYDMEDAMILNKS+ +RG +G +Y++E +DL+
Sbjct: 739 ELYNEYGLDGWPQGNNAIVAVISYTGYDMEDAMILNKSAHERGFGYGTVYKSEVVDLN-- 796
Query: 756 GNKVDRGQKL-FRRNKD---AKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTN 811
RG+ + +R D K + + DGLP++G + +P C D++T
Sbjct: 797 -QYRSRGEAITYRFGLDPIKGKKYKNKLGPDGLPHIGAHLVADDPLCCYIDESTGKDVIK 855
Query: 812 SRKGSESVFVDYVAVDMKNSKNLP-QKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPD 870
KG E +VD V V +S N QK +I+ R TR+P+IGDKFSSRHGQKGVCSQ +P
Sbjct: 856 KYKGPEDAYVDEVRVLGDDSGNGELQKVHIKLRITRSPVIGDKFSSRHGQKGVCSQKYPA 915
Query: 871 IDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
IDMPF+ +GM+PD+IINPHAFPSRMTI M +ES+A K
Sbjct: 916 IDMPFTE-SGMQPDVIINPHAFPSRMTIGMFVESIAGK 952
>gi|385302821|gb|EIF46931.1| dna-directed rna polymerase i [Dekkera bruxellensis AWRI1499]
Length = 1168
Score = 739 bits (1907), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 400/880 (45%), Positives = 558/880 (63%), Gaps = 49/880 (5%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR+ SY G+L+ V + D E + G PVM+++ RC+L+G ++LV +
Sbjct: 107 CRERLSSYRGRLLLKVTWNVNDGEE--TSEVRDAGLLPVMVQSNRCNLEGMSPEELVEHR 164
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
EE+ E GGYFI+NG+E++ R +I+P++NYPM++VRSSF +R Y+ V IRCVR DQ+
Sbjct: 165 EESDEFGGYFIVNGIEKIIRMLIVPRRNYPMAIVRSSFSNRGASYSSYGVQIRCVRPDQT 224
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
++T L+YL +G+V F + EYL+PV ++L+AL+++ND EIF+
Sbjct: 225 ALTNVLHYLNDGNVTFRFSWRKNEYLVPVVMILRALIESNDREIFD-------------- 270
Query: 218 GAVGS----PLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAET 273
G VGS +++R++++L + L ++ + L +IG F+ V + V E
Sbjct: 271 GIVGSDVENSFLTDRLELLLRTYKHYKLNSKKEALAYIGNKFRVVFAATPDRTDVDVGEE 330
Query: 274 VIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLK 333
V+R + VHL+DN DKF +L+FM++KL++LV +NPDS QN EILL G L + +K
Sbjct: 331 VLRRIVLVHLSDNRDKFRMLLFMVRKLYALVAGDCTPENPDSTQNHEILLGGFLYGMIIK 390
Query: 334 EKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLAT 393
EK++++L+ + IQ +I N G +F + + +V+ + ++ IG ++ L TG L +
Sbjct: 391 EKIDEYLQSIRTQIQVDI-NRGVAVNFKDPRYMHRVLMR-VNENIGQKLQYFLSTGNLVS 448
Query: 394 QTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVH 453
Q+GLDLQQ +GYTV AE++NF RF++ FR VHRGA FA L+TT+VRKLLPESWGFLCPVH
Sbjct: 449 QSGLDLQQVSGYTVVAEKINFHRFLAHFRMVHRGAFFASLKTTTVRKLLPESWGFLCPVH 508
Query: 454 TPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTS-ILRVLIGVGMIPSLPKLVKSG 512
TPDG PCGLLNH+ C+V + ++ TS I + +G+ P+L SG
Sbjct: 509 TPDGAPCGLLNHLAYKCQVTT-----------EQLDTSAIPEAVYKLGVSPTLSAAAISG 557
Query: 513 PPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKV-SAASVIPDDLEVGYVPLSLGGAYPG 571
P V V LDGR++G + + V LR KV S+ IP +LE+GYVP S G YPG
Sbjct: 558 P-NVCCVQLDGRIIGWCSHKQGKYVADTLRFWKVESSEHGIPLELEIGYVPESQNGQYPG 616
Query: 572 LYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEE 631
LYLF + +RPV+ + L ++ ++GPFEQV+M I + +N TH E
Sbjct: 617 LYLFGGRSRMIRPVKYLPLNKKD-----IVGPFEQVYMNIAVEP--NEIEKNVH--THVE 667
Query: 632 IHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTP 691
PT +LS +ANLTP+SD NQSPRNMYQCQM KQTMG AL R+D KLY LQ ++P
Sbjct: 668 FSPTYILSTLANLTPFSDFNQSPRNMYQCQMGKQTMGTPGVALCHRSDNKLYRLQCGESP 727
Query: 692 IVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETID 751
IV+ Y +G+D +P GTNA+VAV+AYTGYDM+DAMILNKS+ +RG +G +Y+TE ID
Sbjct: 728 IVKAGLYDDFGMDNFPNGTNAVVAVIAYTGYDMDDAMILNKSTEERGFAYGSMYKTEKID 787
Query: 752 LSDDGNKVDRGQKLFRRNKD--AKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWR 809
L D + D + F +D + +D DG+PY+G I G+P C+ YD R
Sbjct: 788 LGMDRRRGDPITQHFGFGEDHWPEEWRERLDEDGMPYIGSFIKEGDPICAFYDDVLGRTR 847
Query: 810 TNSRKGSESVFVDYVA-VDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLW 868
KGSES F+D V + N+ Q A I+FR R PIIGDKFSSRHGQKGVCS+ W
Sbjct: 848 IKHFKGSESGFIDEVKLLGDDNAAKECQIATIKFRMRRGPIIGDKFSSRHGQKGVCSRKW 907
Query: 869 PDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
P IDMPF+ +GM+PD+IINPHAFPSRMTI ML+ES+A K
Sbjct: 908 PQIDMPFT-ESGMQPDIIINPHAFPSRMTIGMLIESMAGK 946
>gi|409050465|gb|EKM59942.1| hypothetical protein PHACADRAFT_115318 [Phanerochaete carnosa
HHB-10118-sp]
Length = 1224
Score = 738 bits (1905), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 399/883 (45%), Positives = 562/883 (63%), Gaps = 48/883 (5%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
R+ SY G++ + ++ D PV +E + G P+M+++ RC+L+G S +LV
Sbjct: 130 ARERLTSYRGRMTTRLCWRINDG--PVEKENRDCGLLPIMVRSVRCNLRGMSSAELVQHH 187
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
EE E GGYFI+NG ER+ R +ILP++N+ +S++R SF +R YT AV IRCVR DQ+
Sbjct: 188 EEPEEFGGYFIINGNERLIRYLILPRRNHVISLIRPSFTNRGPSYTPHAVQIRCVRPDQT 247
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
SVT L+YL NGS L F + +EY++P+ ++LKALV +D EIF + ++Y+
Sbjct: 248 SVTNTLHYLSNGSATLRFSWRKQEYVIPIMLILKALVGVSDKEIFEGVMM---QEYEDT- 303
Query: 218 GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRD 277
+++RV+++L + SL T QCL+++G F+ V+ + + A+ ++
Sbjct: 304 ------FLTDRVEMLLRSFKAYSLYTGDQCLEYLGNKFRVVLGMPEDWTNKALGTWLVDK 357
Query: 278 YIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLE 337
+ VHL+ DKF +L+FML+KLF++V + DNPDS Q+QE+LLPG L + +KE+LE
Sbjct: 358 LVLVHLDSPRDKFRMLLFMLRKLFAVVSGSCSVDNPDSPQHQEVLLPGALYGMIIKERLE 417
Query: 338 DWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGL 397
+ L + IQ +++ + DFF+ IKK+++K + +IG + L TG L + +GL
Sbjct: 418 EALNNFVRSIQIDVQRDEPSVDFFDKRYIKKMLQK-INYEIGARMSNFLATGNLVSASGL 476
Query: 398 DLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDG 457
DLQQ +G+T+ AE+LN+LR+IS FR++HRGA FA L+TT+VRKLLPE+WGFLCPVHTPDG
Sbjct: 477 DLQQASGFTIVAEKLNWLRYISHFRSIHRGAFFAELKTTTVRKLLPEAWGFLCPVHTPDG 536
Query: 458 EPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVL 517
PCGLLNH++ TCR+ + + +I +L+ GM + LV L
Sbjct: 537 SPCGLLNHLSRTCRIVTQPLAVAHIP----------ALLVSHGMTQAFSTLVDG--RRNL 584
Query: 518 SVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTS 577
+ LDGRV+G P + +++ LR K +P DLE+GYVP S GG YPGLYLF+S
Sbjct: 585 CIQLDGRVIGWAPQNTAQRLATSLRIWKTEGKHNVPLDLEIGYVPTSQGGQYPGLYLFSS 644
Query: 578 PPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRNAFPATHEEIHPTG 636
+ +RPV+ +S +N + IG FEQV+M I C P+ + G F +H E PT
Sbjct: 645 RSRMMRPVKYLS----NGRN-DQIGSFEQVYMNIACTPEEIEKG---VF--SHVEHKPTN 694
Query: 637 MLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTN 696
LS++ANLTP+SD NQSPRN+YQCQM KQ+MG L+ R D KLY LQT Q+P+VR
Sbjct: 695 FLSILANLTPFSDFNQSPRNIYQCQMGKQSMGTPSTTLRHRTDNKLYRLQTGQSPVVRPA 754
Query: 697 TYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSD-D 755
+ YG+D +P GTNAIVAV++YTGYDMEDAMILNKS+ +RG +G +Y+++ IDL D
Sbjct: 755 LHDTYGMDSFPNGTNAIVAVISYTGYDMEDAMILNKSAHERGFGYGTVYKSQIIDLKDLQ 814
Query: 756 GNKVDR---------GQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTN 806
G G + A S +D DGLPYVG ++PG+P + D TT
Sbjct: 815 GRSASSSAPTLHFGFGYDIKTEGDKAHSCCEFLDLDGLPYVGTRLNPGDPIAAYIDDTTG 874
Query: 807 SWRTNSRKGSESVFVDYVAVDMKNSKNLP-QKANIRFRHTRNPIIGDKFSSRHGQKGVCS 865
R KG E+ +VD V + ++ + QK +I R TR P+IGDKFSSRHGQKGVCS
Sbjct: 875 RTRFVKYKGDETAYVDTVRLLGSDAGDQELQKVHITLRITRAPVIGDKFSSRHGQKGVCS 934
Query: 866 QLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
Q WP IDMPF+ +GM+PD+IINPHAFPSRMTI ML+ES+A K
Sbjct: 935 QKWPMIDMPFT-ESGMQPDVIINPHAFPSRMTIGMLVESMAGK 976
>gi|392568224|gb|EIW61398.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Trametes versicolor FP-101664 SS1]
Length = 1231
Score = 738 bits (1905), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 400/891 (44%), Positives = 561/891 (62%), Gaps = 64/891 (7%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
R+ SY G++M + +Q D PV E + G P+M+++ RC+L+G S +LV
Sbjct: 132 ARERLTSYRGRMMVKICWQVNDG--PVEVEMRDCGLLPIMVRSTRCNLRGMSSGELVRHH 189
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
EE E GGYF++NG ER+ R +ILP++++ +S+VR SF +R YT AV IRCVR DQ+
Sbjct: 190 EEPEEFGGYFVINGNERLIRYLILPRRHHVISLVRPSFVNRGPSYTPYAVQIRCVRPDQT 249
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
S T L+YL NGS L F + +EY++P+ ++LKALV +D E+F + + Y
Sbjct: 250 SATNTLHYLSNGSAMLRFSWRKQEYVIPIMLILKALVSASDKEVFEGVMM---QDY---- 302
Query: 218 GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRD 277
G +S+RV+++L + L T QCLQ++G+ F+ V++ + + A+ +I
Sbjct: 303 ---GDTFLSDRVELLLRSFKMYHLYTGDQCLQYLGDKFRIVVNMPEDWTNQAIGVWLINK 359
Query: 278 YIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLE 337
+ VHL + DKF +L+FML+KL++LV + DNPDS Q+QE+LLPG L + +KE+LE
Sbjct: 360 VVLVHLQNARDKFRMLLFMLRKLYALVSKSCSVDNPDSPQHQEVLLPGALYGMIIKERLE 419
Query: 338 DWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGL 397
+ L ++ I ++ N+ DF++ IKKV+++ S IG + L TG L T TGL
Sbjct: 420 EALNGFREGIALDVRNSNPAVDFYDKRYIKKVLQRT-SYDIGAKMSNFLATGNLVTPTGL 478
Query: 398 DLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDG 457
DLQQ +G+T+ AE+LN++R+IS FR++HRGA FA L+TT+VRKLLPE+WGFLCP HTPDG
Sbjct: 479 DLQQASGFTIVAEKLNWMRYISHFRSIHRGAFFAELKTTTVRKLLPEAWGFLCPAHTPDG 538
Query: 458 EPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSL---PKLVKSGPP 514
PCGLLNH++ TCR I+ + V IP+L + ++ P
Sbjct: 539 SPCGLLNHLSRTCR--------------------IVTTPLAVSHIPALLAAHGMTQAFAP 578
Query: 515 AV-----LSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAY 569
+V L V LDGR++G P++ +++ LR K +P DLE+GYVP+S G Y
Sbjct: 579 SVDGRRNLCVQLDGRLIGWAPAAVCQQLATSLRIWKTEGKHSVPLDLEIGYVPVSKAGQY 638
Query: 570 PGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRNAFPAT 628
PGLYLF S + +RPV+ + ++ +G FEQV+M+I C P + G ++
Sbjct: 639 PGLYLFASRSRMMRPVKYVPNGKDDQ-----VGSFEQVYMDIACTPAEIEDGV-----SS 688
Query: 629 HEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTP 688
H E PT LS++ANLTP+SD NQSPRN+YQCQM KQTMG AL+ R D KLY LQT
Sbjct: 689 HVEHSPTNFLSILANLTPFSDFNQSPRNIYQCQMGKQTMGTPATALQHRTDNKLYRLQTG 748
Query: 689 QTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTE 748
QTPIVR + YG+D +P GTNAIVAV++YTGYDMEDAMILNKS+ +RG +G +Y++
Sbjct: 749 QTPIVRPMLHNTYGMDSFPNGTNAIVAVISYTGYDMEDAMILNKSAHERGFGYGTVYKSY 808
Query: 749 TIDLSD-DGNK---------VDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYC 798
T+DL + G++ G ++ + A IDSDGLP VG ++PG+P
Sbjct: 809 TVDLQELTGSRRIATTPTLHFGFGPEIRTDGEKAHPATLHIDSDGLPCVGARLNPGDPIA 868
Query: 799 SIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLP-QKANIRFRHTRNPIIGDKFSSR 857
+ D TT + KG E +VD V + ++ + QK N+ R TR P+IGDKFSSR
Sbjct: 869 AYVDDTTGRTKFAKYKGDEVAYVDTVRLIGSDAGDQELQKINMTLRITRAPVIGDKFSSR 928
Query: 858 HGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
HGQKGVCSQ WP IDMPFS +GM+PD+IINPHAFPSRMTI ML+ES+A K
Sbjct: 929 HGQKGVCSQKWPAIDMPFS-ESGMQPDVIINPHAFPSRMTIGMLVESMAGK 978
>gi|320580927|gb|EFW95149.1| DNA-directed RNA polymerase I [Ogataea parapolymorpha DL-1]
Length = 1166
Score = 736 bits (1900), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 395/876 (45%), Positives = 559/876 (63%), Gaps = 42/876 (4%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR+ +Y +L+ V + D + E GQ P+ML++ RCHL+ +LV L+
Sbjct: 107 CRERMTTYRARLLLKVCWSINDGEE--ISEVREAGQIPIMLQSNRCHLENLSPDQLVKLR 164
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
EE+ E+GGYFI+NG+E++ R +I+ ++N+PM+++R SF +R Y+ V IR VR DQ+
Sbjct: 165 EESDELGGYFIVNGIEKLIRMLIVQRRNHPMAIIRPSFANRGTSYSHFGVQIRSVRPDQT 224
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
S T L+YL +G+V F + EYL+PV ++LKAL++TND EIF+ +
Sbjct: 225 SQTNVLHYLNDGNVTFRFSWRKNEYLIPVVMILKALIETNDREIFDGVV----------- 273
Query: 218 GA-VGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIR 276
GA G+ +++R++++L ++ +L ++ + L ++G+ F+ V S +V E VI+
Sbjct: 274 GADTGNSFLTDRLELLLRTYKNYNLYSQKETLAYLGDKFRVVFGATPDMSDISVGEEVIK 333
Query: 277 DYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKL 336
+ VHL +N DKF +L+FM++KL+SLV DNPD+ Q+QEILL G L + LKEK+
Sbjct: 334 RIVLVHLENNEDKFRMLLFMIRKLYSLVAGDCSPDNPDATQHQEILLGGFLYGMILKEKI 393
Query: 337 EDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTG 396
E++L+ + +Q +I N G +F + + +V + ++ IG ++ L TG L +Q+G
Sbjct: 394 EEYLQNIRLQVQSDI-NRGIAVNFSDRKYMSRVFLR-INENIGQKLQYFLSTGNLVSQSG 451
Query: 397 LDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPD 456
LDLQQ +GYTV AE++NF RFIS FR VHRG+ FA L+TT+VRKLLPESWGFLCPVHTPD
Sbjct: 452 LDLQQVSGYTVVAEKINFHRFISHFRMVHRGSFFAQLKTTAVRKLLPESWGFLCPVHTPD 511
Query: 457 GEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAV 516
G PCGLLNH+ CR+ + D +K + ++L +G+ P+ + SGP V
Sbjct: 512 GSPCGLLNHLAHKCRITT------KASDVTK----VPKLLHKLGVSPTASAINISGP-NV 560
Query: 517 LSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFT 576
V LDGR++G + + V LR KV IP DLE+GYVP S GG YPGLYLF
Sbjct: 561 CCVQLDGRIIGWCSHKQGKIVADTLRFWKVEGHHDIPLDLEIGYVPPSSGGQYPGLYLFA 620
Query: 577 SPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRNAFPATHEEIHPT 635
+ VRPVR + L E+ ++GPFEQVFM + P + TH E PT
Sbjct: 621 GASRMVRPVRYLPLDKED-----IVGPFEQVFMNVAVIPSEIENNIH-----THVEFAPT 670
Query: 636 GMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRT 695
+LS++ANLTP+SD NQSPRNMYQCQM KQTMG AL R+D KLY LQ+ QTPIV+
Sbjct: 671 NILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGVALCHRSDNKLYRLQSGQTPIVKA 730
Query: 696 NTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDD 755
N Y YG+D +P GTNA+VAV++YTGYDM+DAMI+NKS+ +RG +G +Y+ E +DLS +
Sbjct: 731 NLYDDYGMDNFPNGTNAVVAVISYTGYDMDDAMIINKSADERGFGYGVVYKVEKVDLSLN 790
Query: 756 GNKVDRGQKLFRRNKDA--KSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSR 813
+ D + F D +S +D+DGLP++G + G+P C+ YD + +
Sbjct: 791 RKRGDPITQHFGFGSDEWPESWKEKLDNDGLPHIGVHVEEGDPICAYYDDILGKTKVKTY 850
Query: 814 KGSESVFVDYVA-VDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDID 872
SE F++ V + N + Q +I++R TR P+IGDKFSSRHGQKGVCS+ WP ID
Sbjct: 851 HSSEPAFIEEVKLLGDDNGTSEFQTLSIKYRITRQPLIGDKFSSRHGQKGVCSRKWPQID 910
Query: 873 MPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
MPFS TG++PD+IINPHAFPSRMTI M +ES+A K
Sbjct: 911 MPFSE-TGIQPDVIINPHAFPSRMTIGMFVESLAGK 945
>gi|255070151|ref|XP_002507157.1| predicted protein [Micromonas sp. RCC299]
gi|226522432|gb|ACO68415.1| predicted protein [Micromonas sp. RCC299]
Length = 1192
Score = 736 bits (1900), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 404/969 (41%), Positives = 578/969 (59%), Gaps = 91/969 (9%)
Query: 10 EPLRELVRHHIESFDYMLDEGLSEM--------------------------FDH------ 37
E LR + R+H+ SFDY LD GLS++ F++
Sbjct: 20 EALRGVARNHLASFDYFLDHGLSDVVRCLDNISIQPSGAQNTSSSPRFKMWFENISIGRP 79
Query: 38 -------------------CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVML 78
CR++ +Y ++A V + + D G+ + R F FPVM+
Sbjct: 80 IREDTTAVRARDPRVFPRECRESSNTYKAPMLATVAWTFGDVGA-IFRREFRICMFPVMV 138
Query: 79 KTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDR 138
++ C+L G +L+ EE EMGGYFILNG ER+ R ++ +++Y M M R ++ R
Sbjct: 139 ASKVCNLFGFSQDELICRGEEGHEMGGYFILNGNERIIRLLVQQRRHYIMGMKRKAYSSR 198
Query: 139 REGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTND 198
YT A IRC D+ + T++++Y +GS RL F + KEY +P GI+L+AL + +D
Sbjct: 199 GPIYTHYATAIRCSANDEHTSTVRIHYTSDGSARLVFVHRRKEYFVPAGIILRALAEFSD 258
Query: 199 LEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPV 258
+ + + G ER++IIL E + ++Q L ++GEHF+
Sbjct: 259 SVVQAIVA-------RGLTGLGAQVFAIERIRIILGEAATFGIHNKVQALAYLGEHFRAQ 311
Query: 259 IDGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQN 318
+D E+ + V + +I ++IF+HL + DKFNL++ M+QKL++LV +DNPDSL +
Sbjct: 312 LDANPWETNFDVGKRLICEHIFIHLQSDEDKFNLVLLMMQKLYALVAGQCSADNPDSLMH 371
Query: 319 QEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENN-----GKKFDFFNLANIKKVMEKN 373
EILLPG L+ I+++EKL+D L K K + E E N ++ + I+ + + N
Sbjct: 372 HEILLPGILMQIFVREKLQDALHKAKIALNREFEENPNHASADDGEWLSQVAIEAITKTN 431
Query: 374 PSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGL 433
IG E L TG L+++TGL L Q +G+T+ A++LN++R+IS FR+VHRGA FA L
Sbjct: 432 ----IGRLAEYFLATGNLSSRTGLGLTQTSGFTIVADKLNYMRYISHFRSVHRGAYFAEL 487
Query: 434 RTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSIL 493
RTT+VRKLLPESWGFLCPVHTPDG PCGLLNH+ ++C + +S G RD + R+ +L
Sbjct: 488 RTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHLAASCYIHVACESTGEARD--RARSQVL 545
Query: 494 RVLIGVG-MIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVI 552
+VL G +I + S PPA L+V+LDG ++G + S+ + VV+ LR KVS ++ +
Sbjct: 546 KVLSSAGALILHGSTSLGSAPPAHLTVMLDGLILGFVADSDAKVVVSALRAAKVSGSNGV 605
Query: 553 PDDLEVGYVPLS---LGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFM 609
LE+ ++PLS GGA+PGLYLF++ + +RPV ++++ E IG EQ FM
Sbjct: 606 SSHLEIAHIPLSSCGYGGAFPGLYLFSTSSRMMRPVIQ-----QQNRITENIGSLEQAFM 660
Query: 610 EIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGF 669
IRCPDG A A HEE P +LSVVA+LTP+SD NQSPRNMYQCQMAKQTMG
Sbjct: 661 SIRCPDGRQKPTCIAEHA-HEENGPGTILSVVASLTPWSDFNQSPRNMYQCQMAKQTMGM 719
Query: 670 SVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMI 729
+ + +R D K+Y L TPQ P+ T Y KY +D YP GTNA+VAV+A+TGYDMEDAMI
Sbjct: 720 PLHSFCYRPDTKIYRLHTPQRPVAMTGQYDKYQMDNYPLGTNAVVAVIAHTGYDMEDAMI 779
Query: 730 LNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNK--------DAKSLHSVIDS 781
+NK +++RG+ H +Y+TET+ L G+ + GQ + K + ID+
Sbjct: 780 VNKGAMERGLGHATLYKTETVTLV-AGSDENFGQCNVIQQKLGSPIAFTEKHPFDPDIDT 838
Query: 782 DGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDM-KNSKNLPQ-KAN 839
DG P G + G CS+ D++T R + KGS+ V +D V++ K SK + K +
Sbjct: 839 DGAPRPGSIKQAGSTLCSVVDRSTGRVRLHKIKGSDHVIIDRVSISSGKASKGQTETKMS 898
Query: 840 IRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIA 899
+ R RNPIIGDKFSSRHGQKGV S L P+ D+P+ +G RPD++INPHAFPSRMTI
Sbjct: 899 VTVRCDRNPIIGDKFSSRHGQKGVLSFLCPEEDLPYIEKSGSRPDILINPHAFPSRMTIG 958
Query: 900 MLLESVAAK 908
MLLES+A+K
Sbjct: 959 MLLESMASK 967
>gi|295442842|ref|NP_595819.2| DNA-directed RNA polymerase I complex subunit Rpa2
[Schizosaccharomyces pombe 972h-]
gi|259016134|sp|Q9P7X8.2|RPA2_SCHPO RecName: Full=Probable DNA-directed RNA polymerase I subunit RPA2;
AltName: Full=DNA-directed RNA polymerase I polypeptide
2; Short=RNA polymerase I subunit 2
gi|254745588|emb|CAB66435.2| DNA-directed RNA polymerase I complex subunit Rpa2
[Schizosaccharomyces pombe]
Length = 1174
Score = 733 bits (1893), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 393/905 (43%), Positives = 557/905 (61%), Gaps = 89/905 (9%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
R+ +Y +L+ ++F + G P E G P+M+++ RCHL+G +L++ K
Sbjct: 106 ARERLTTYKSRLV--LKFSWSVNGGPRQSEMREVGMIPIMVRSNRCHLEGLSPAELIAHK 163
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
EE+ EMGGYFI+NG+E++ R +ILPK+N+P +++R SF +R Y+ + IRCVR DQS
Sbjct: 164 EESEEMGGYFIVNGIEKLIRMLILPKRNHPTAIIRPSFANRGTSYSQYGLSIRCVRPDQS 223
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
S+T L+YL NG F + EYL+P ++LKAL++T+D EIF +
Sbjct: 224 SLTNTLHYLNNGVTMFRFHWRKNEYLIPSMMILKALLETSDKEIFEGIV----------G 273
Query: 218 GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRD 277
+G+ +++RV+++L + L ++ + LQ++G F+ V+ + + V +++
Sbjct: 274 KDLGNTFLTDRVELMLRAYKSYGLYSQTETLQYLGSKFRVVLGVAEDLTDVEVGRFLLQK 333
Query: 278 YIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLE 337
+ VHL + DKF LL+FM++KL++LV +DNPDS Q+QEILL G L LKEK+E
Sbjct: 334 VVLVHLREAKDKFRLLLFMIRKLYALVAGECCADNPDSPQHQEILLGGFLYGQILKEKIE 393
Query: 338 DWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGL 397
DWL + I ++ + DF + + +V K + IGT ++ L TG L + TGL
Sbjct: 394 DWLNSIRAQINLDVRRSAPGVDFSDRKYLTRVFSK-INNDIGTKLQYFLSTGNLVSNTGL 452
Query: 398 DLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDG 457
DLQQ GYTV AE+LNF RF+S FR VHRGA FA L+TT+VRKLLPE+WGF+CPVHTPDG
Sbjct: 453 DLQQATGYTVVAEKLNFYRFLSHFRMVHRGAFFAELKTTTVRKLLPEAWGFMCPVHTPDG 512
Query: 458 EPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVL 517
PCGLLNH+ C + ++ V IPSL + PP+V+
Sbjct: 513 SPCGLLNHLARKCEIVTHPSD--------------------VSQIPSLLLSLGVDPPSVV 552
Query: 518 S-------VLLDGRVVGVIPSSEIEKVVAHLRRLKVSAA-----------SVIPDDLEVG 559
V LDG++VG + V LR +K+ A + +P DLE+G
Sbjct: 553 GHESGWGCVQLDGKIVGWCTYKLAKHVADVLRLMKIEYAVKLRNGTATEPAKVPLDLEIG 612
Query: 560 YVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDG 619
YVP S G YPGLYLF++P + VRPV++IS + ++++GPFEQV+M+I C
Sbjct: 613 YVPPSHNGQYPGLYLFSNPARMVRPVKHIS-----TGELDMLGPFEQVYMDIAC------ 661
Query: 620 GRRNAFP-------ATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQ 672
FP +TH E PT +LS+VAN+TP+SD NQSPRNMYQCQM KQTMG
Sbjct: 662 -----FPKEIVPKVSTHVEYSPTNVLSIVANMTPFSDFNQSPRNMYQCQMGKQTMGTPGT 716
Query: 673 ALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNK 732
AL++R D KLY LQT QTP+VR + YG+D YP GTNA+VAV++YTGYDMEDAMILNK
Sbjct: 717 ALRYRTDNKLYRLQTGQTPVVRPKLHNTYGLDHYPNGTNAVVAVISYTGYDMEDAMILNK 776
Query: 733 SSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDA------KSLHSVIDSDGLPY 786
S+ +RG +G +Y+ E+ DLS K RG+ + A + +D+DGLP+
Sbjct: 777 SAHERGFGYGTVYKGESFDLS---QKRRRGEPVVHHFGFAPGSTPRREWLQKLDADGLPF 833
Query: 787 VGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAV---DMKNSKNLPQKANIRFR 843
+G + G+P + YD++T + G+E FVD V + D+ +S+ Q+ +++ R
Sbjct: 834 IGIKLEDGDPIVAYYDESTGQNFIETYHGTEPGFVDEVRLLGNDVGDSEC--QQIHVKLR 891
Query: 844 HTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLE 903
TR+PIIGDKFSSRHGQKG+CSQ WP +DMPF+ +GM+PD+IINPHAFPSRMTI M +E
Sbjct: 892 ITRSPIIGDKFSSRHGQKGICSQKWPTVDMPFT-ESGMQPDIIINPHAFPSRMTIGMFIE 950
Query: 904 SVAAK 908
S+A K
Sbjct: 951 SLAGK 955
>gi|303274472|ref|XP_003056556.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226462640|gb|EEH59932.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 1198
Score = 733 bits (1891), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 406/990 (41%), Positives = 570/990 (57%), Gaps = 109/990 (11%)
Query: 4 KKSADFEPLRELVRHHIESFDYMLDEGLSEMFD--------------------------- 36
+ S + + LR +V +H+ SF+Y ++ GL+E+
Sbjct: 10 RGSPERDALRSIVSNHVASFNYFVEHGLAEVIKRMASVSVQAPGTSAQSSRIRLWFSGVS 69
Query: 37 ----------------------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQF 74
CR+A +Y + A++ + +AG V QF
Sbjct: 70 MKTPVRERDGLSLARDPRVFPRECREAGSTYKAPMTANICWSVGEAGE-VYHHELQLCQF 128
Query: 75 PVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNY-------- 126
PVM+ + RCHL A +L++ EE E+GGYFILNG ER+ R +I +++Y
Sbjct: 129 PVMVSSTRCHLASASRAELINRGEEGREIGGYFILNGNERMIRLLIQQRRHYIIRIHDSV 188
Query: 127 ---------------------PMSMVRSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYY 165
+ + R++F R YT A IRCV D+ S T++L+Y
Sbjct: 189 CWISLINEITFYFYFFFECPCSLGLKRAAFTSRGYLYTPFATAIRCVSPDEHSCTVRLHY 248
Query: 166 LLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLV 225
L GS RL F + +EY LP+G+V AL + +D E+ D G
Sbjct: 249 LTGGSARLAFIHRRQEYFLPLGLVFIALCEVSDKEL-------QDVVCSGVPGPGAHVFA 301
Query: 226 SERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLND 285
SERV ++L E+ L + TR Q L ++G F+ ++ E+ + + +IRD++F+HL
Sbjct: 302 SERVAMVLEEIHTLGIQTRSQALSYLGICFRERLNADSWETNIDIGKRIIRDHVFIHLAT 361
Query: 286 NNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKK 345
+DKFNLL+ MLQKL++LV DNPDSL + E+LLPG L+ ++++E+L + L K K
Sbjct: 362 CSDKFNLLVLMLQKLYALVTGQCSQDNPDSLMHHEVLLPGILLQMFMREQLSEALIKVKD 421
Query: 346 LIQDEIENNGKKFDFFNLANIKKVMEKNPSK-QIGTSIETMLKTGRLATQTGLDLQQRAG 404
I E E + D + I ++ + + +G E L TG L ++TGL L Q +G
Sbjct: 422 TILREFEGQPQTMDLNDRERILSLVVGSIGRIDLGRMAEYFLATGNLVSKTGLGLSQTSG 481
Query: 405 YTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLN 464
+T+ A++LN++R++S FR++HRGA +A LRTT+VRKLLP+SWGFLCPVHTPDG PCGLLN
Sbjct: 482 FTIVADKLNYVRYLSHFRSIHRGAYYAELRTTTVRKLLPDSWGFLCPVHTPDGSPCGLLN 541
Query: 465 HMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVL-SVLLDG 523
H+T++C V + S G R +I R+L VG++ + +L + P VL V LDG
Sbjct: 542 HLTASCFV---HISDGQNRGLEM--AAIFRILSSVGVLITTGRLRSTSAPHVLIPVTLDG 596
Query: 524 RVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSL---GGAYPGLYLFTSPPK 580
+VG + +++ KVVA LR KVS +P LEV Y+P + GGA+PGLYLFTS +
Sbjct: 597 VMVGFMRAADSAKVVATLRSAKVSEPPKVPPSLEVVYIPTLVNRSGGAFPGLYLFTSSSR 656
Query: 581 FVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSV 640
+RPVR ++ S IE I EQ FM I+CPDG GG THEE + MLSV
Sbjct: 657 LMRPVRQLA-----SGFIENISSLEQAFMSIKCPDGSSGGSEE-LVFTHEESNAKAMLSV 710
Query: 641 VANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTK 700
+A+ TP+SD+NQSPRNMYQCQMAKQTMG + A +R D KLY LQ+PQ PI T +Y +
Sbjct: 711 IASCTPWSDYNQSPRNMYQCQMAKQTMGLPLHAFCYRPDTKLYRLQSPQRPIAVTESYDE 770
Query: 701 YGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVD 760
Y IDEYP GTNA++AVLAYTGYDMEDAMI++K S++RG H +Y+TET+ L KV
Sbjct: 771 YSIDEYPLGTNAVIAVLAYTGYDMEDAMIVSKGSMERGFSHATLYKTETLSLVTGSGKV- 829
Query: 761 RGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVF 820
+ + SL ++ DG P VG +I PG S+ D+ T + KG++
Sbjct: 830 ----FGHFDLRSHSLEGTLNIDGSPSVGSIIEPGSALASVVDRITGQTHVHKAKGTDQAI 885
Query: 821 VDYVAVDMKN-SKNL-PQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGV 878
VD V+V + S+ + K + R+ RNPIIGDKFSSRHGQKGV S LWP+ +P+
Sbjct: 886 VDRVSVIQTSLSRGIRSTKMALSLRYNRNPIIGDKFSSRHGQKGVLSFLWPEESLPYVER 945
Query: 879 TGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
TG+RPD+IINPHAFPSRMTI ML+ES+A+K
Sbjct: 946 TGIRPDIIINPHAFPSRMTIGMLVESMASK 975
>gi|71005228|ref|XP_757280.1| hypothetical protein UM01133.1 [Ustilago maydis 521]
gi|46096459|gb|EAK81692.1| hypothetical protein UM01133.1 [Ustilago maydis 521]
Length = 1289
Score = 729 bits (1883), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/882 (43%), Positives = 550/882 (62%), Gaps = 35/882 (3%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
R+ +YTGKL A + + G P + G PV++++ RC+L+G S++LV+
Sbjct: 176 ARERLFTYTGKLTARLCWSV--NGDPEQSDIVTLGNCPVLVRSNRCNLRGMSSRELVAHH 233
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQ- 156
EEA E GGYF++NG ER+ R +I+ K N P ++ R SF R Y++KA+VIRC+ KD
Sbjct: 234 EEANEFGGYFLVNGNERLIRYLIVAKANSPQAIERPSFEKRGPSYSNKAIVIRCLHKDDL 293
Query: 157 SSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKE 216
SVT ++YL NG + + F + +EY++PV +VLKALVD D EIF +
Sbjct: 294 ISVTNAVHYLHNGGLTMRFSWRKQEYMVPVVMVLKALVDATDKEIFASIV---------- 343
Query: 217 KGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIR 276
+G + +++RV+++L + SL + QCL+++G F+ V+ + + V +I
Sbjct: 344 QGDFENTFLTDRVELLLRNFKQYSLWSGHQCLEYLGSKFRVVLGCPEDYTDAQVGTELIS 403
Query: 277 DYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKL 336
+ VHL+ DK+ +LIFM+QKL+SLV S +DN DS Q+ EIL+PG L+ +KE++
Sbjct: 404 RILLVHLDSPRDKYKMLIFMIQKLYSLVAGESCADNADSPQHHEILMPGFLVGQIIKERI 463
Query: 337 EDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTG 396
++ + + I ++ K DFF+ IKK + K + IG I + L TG L++ +G
Sbjct: 464 DEAVGNIRAQIARDVRMKVKGLDFFDSKYIKKTVSK-VNIDIGVKIASFLATGNLSSPSG 522
Query: 397 LDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPD 456
LDLQQ +G+T+ AE+LNF R+++ FR+VHRGA FA L+TTSVRKLLPE+WGFLCPVHTPD
Sbjct: 523 LDLQQTSGFTIMAEKLNFARYLAHFRSVHRGAFFAELKTTSVRKLLPEAWGFLCPVHTPD 582
Query: 457 GEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAV 516
G PCGLLNH + TCR+ + +I + +G + + + +
Sbjct: 583 GSPCGLLNHFSHTCRMTTRQPDVSHIHALLS-GLGMTEAAFAIGAVGAASQRDTDARDNM 641
Query: 517 LSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFT 576
+ V LDG ++G + + + LR K +P DLE+G+VP S G YPGLYLF+
Sbjct: 642 VVVQLDGAILGYTTPALAKHMATALRIWKTEGLHHVPLDLEIGFVPTSRAGQYPGLYLFS 701
Query: 577 SPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIHPTG 636
+ + +RPVR + + I+++GPFEQV+++I C D +TH E+ PT
Sbjct: 702 NRARMMRPVRLL-----HNNKIDMVGPFEQVYLDIAC----DPQEVVPGVSTHVELAPTS 752
Query: 637 MLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTN 696
+LSV+ANLTP+SD+NQSPRN YQ QM KQTMG + A+ R D KLY +QTPQTP+VR
Sbjct: 753 ILSVLANLTPFSDYNQSPRNCYQAQMMKQTMGTASTAVSRRTDNKLYRIQTPQTPVVRPE 812
Query: 697 TYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDG 756
Y KYG D+YP GTNAIVAV++YTGYDMEDAMILNKS+ +RG +G +Y++ETIDL D
Sbjct: 813 LYNKYGFDDYPNGTNAIVAVISYTGYDMEDAMILNKSAHERGFGYGTVYKSETIDLRDLK 872
Query: 757 NKVDRGQKLFR-----RNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTN 811
K ++ ++ +++D DGLPY+GQ + GEP C+ +D+ +
Sbjct: 873 GKSSSSVPTLHFGFAPNSRPTEAQRAILDQDGLPYIGQKVMAGEPICAYWDEVSGKTMFK 932
Query: 812 SRKGSESVFVDYVAVDMKNSKNLP-----QKANIRFRHTRNPIIGDKFSSRHGQKGVCSQ 866
KG E +VD V + ++ + QK I R TR+P+IGDKFSSRHGQKGVCSQ
Sbjct: 933 KFKGDEYAYVDTVRLLGSDAGSGGGDSECQKVQIMLRITRSPVIGDKFSSRHGQKGVCSQ 992
Query: 867 LWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
WP +DMPFS +GM+PD+IINPHAFPSRMTI ML+ES+A K
Sbjct: 993 KWPAVDMPFSE-SGMQPDVIINPHAFPSRMTIGMLIESIAGK 1033
>gi|255731632|ref|XP_002550740.1| DNA-directed RNA polymerase I 135 kDa polypeptide [Candida
tropicalis MYA-3404]
gi|240131749|gb|EER31308.1| DNA-directed RNA polymerase I 135 kDa polypeptide [Candida
tropicalis MYA-3404]
Length = 1166
Score = 729 bits (1881), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 388/876 (44%), Positives = 555/876 (63%), Gaps = 42/876 (4%)
Query: 37 HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
CR+ ++Y +LM +V + D V E GQ P+MLK+ RCHL+ +LV
Sbjct: 107 ECRERMVTYRSRLMLNVTWSVNDGEE--VSEVREAGQIPIMLKSNRCHLEKLTPNQLVEA 164
Query: 97 KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQ 156
KEE+ E+GGYFI+NG+E++ R +I+ ++N+PM+++R SF +R YT + IRCVR DQ
Sbjct: 165 KEESDELGGYFIVNGIEKLIRMLIVQRRNHPMALIRPSFGNRGASYTKYGIQIRCVRPDQ 224
Query: 157 SSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKE 216
+S T L+YL +G+V F + EYL+PV ++LKALV+TND EIF+ +
Sbjct: 225 TSQTNVLHYLNDGNVTFRFSWRKNEYLVPVTMILKALVETNDREIFDGIV---------- 274
Query: 217 KGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIR 276
G+ +++R++++L + +L ++ + L ++G+ F+ V S V + V++
Sbjct: 275 GNDTGNSFLTDRLELLLRTYKKYNLNSQQETLAYLGDKFRVVFGATPDMSDIDVGKEVLK 334
Query: 277 DYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKL 336
+ VHL DN DKF +L+FM++KL+SLV DNPD+ Q+QE+LL G L + +KEK+
Sbjct: 335 RIVLVHLPDNTDKFRMLLFMIRKLYSLVAGDCAPDNPDATQHQEVLLGGFLYGMIIKEKI 394
Query: 337 EDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTG 396
E++L+ K IQ +I N G +F + + +V + ++ IG ++ L TG L +Q+G
Sbjct: 395 EEYLQNIKLQIQSDI-NRGVGINFDDRKYMTRVFSR-INENIGQKLQYFLSTGNLVSQSG 452
Query: 397 LDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPD 456
LDLQQ +GYTV AE++NF RFIS FR VHRG+ FA L+TT+VRKLLPESWGFLCPVHTPD
Sbjct: 453 LDLQQVSGYTVVAEKINFYRFISHFRMVHRGSFFAELKTTTVRKLLPESWGFLCPVHTPD 512
Query: 457 GEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAV 516
G PCGLLNH+ C++A+ D S++ ++ + +GV LP + P +
Sbjct: 513 GSPCGLLNHLAHKCKIATV------ASDVSQVPKALTQ--LGV-----LPADSFAAGPDL 559
Query: 517 LSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFT 576
V LDG++VG + + V LR KV + +P DLE+GYVP S G YPGLYLF
Sbjct: 560 CCVQLDGKIVGWTTHKQGKIVADTLRFWKVEGSHGLPLDLEIGYVPPSNKGQYPGLYLFG 619
Query: 577 SPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRNAFPATHEEIHPT 635
+ +RPV+ + L ++ ++GPFEQV+M + P+ + +H E PT
Sbjct: 620 GHSRMMRPVKYLPLDKQD-----ILGPFEQVYMNVAVTPEEIENNVH-----SHVEFSPT 669
Query: 636 GMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRT 695
+LS++ANLTP+SD NQSPRNMYQCQM KQTMG AL R+D KLY LQT QTPIV+
Sbjct: 670 NILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGTALVHRSDNKLYRLQTGQTPIVKA 729
Query: 696 NTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDD 755
N Y YG+D +P G NAIVAV++YTGYDM+DAMI+NKS+ +RG +G +Y+TE IDLS
Sbjct: 730 NLYDDYGMDNFPNGMNAIVAVISYTGYDMDDAMIINKSADERGFGYGTVYKTEKIDLSQS 789
Query: 756 GNKVDRGQKLFRRNKDA--KSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSR 813
+ D + F D ++ +D+DGLP +G + G+P + YD T + +
Sbjct: 790 RRRGDPITQHFGFGTDEWPEAWKEKLDADGLPMIGVKVEAGDPIVAYYDDTLGKTKVKTY 849
Query: 814 KGSESVFVDYVA-VDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDID 872
SE +++ V + + S Q+ I++R TR P+IGDKFSSRHGQKGVCS+ WP ID
Sbjct: 850 HSSEPGYIEEVKLLGDETSDQEGQQLTIKYRITRAPLIGDKFSSRHGQKGVCSRKWPQID 909
Query: 873 MPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
MPF+ +GM+PD+IINPHAFPSRMTI M +ES+A K
Sbjct: 910 MPFT-ESGMQPDVIINPHAFPSRMTIGMFVESLAGK 944
>gi|388851719|emb|CCF54715.1| probable RPA135-DNA-directed RNA polymerase I, 135 KD subunit
[Ustilago hordei]
Length = 1289
Score = 726 bits (1874), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 395/891 (44%), Positives = 552/891 (61%), Gaps = 53/891 (5%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
R+ +YTGKL A + + G P E G PV++++ RC+L+G S++LV+
Sbjct: 176 ARERLFTYTGKLTARLCWSV--NGDPEQSEIVALGNCPVLVRSNRCNLRGMSSRELVAHH 233
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRK-DQ 156
EEA E GGYF++NG ER+ R +I+ K N P ++ R SF R Y++KA+VIRC+ K D
Sbjct: 234 EEANEFGGYFLVNGNERLIRYLIVAKANSPQAIERPSFEKRGPSYSNKAIVIRCLHKEDL 293
Query: 157 SSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKE 216
SVT ++YL NG + L F + +EY++PV +VLKALVD D EIF +
Sbjct: 294 ISVTNAVHYLHNGGLTLRFSWRKQEYMVPVVMVLKALVDATDKEIFASIV---------- 343
Query: 217 KGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIR 276
+G + +++RV+++L + SL + QCL+++G F+ V+ + + V +I
Sbjct: 344 QGDFENTFLTDRVELLLRNFKQYSLWSGHQCLEYLGSKFRVVLGCPEDWTDAQVGSELIH 403
Query: 277 DYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKL 336
VHL+ +K+ +LIFM+QKL+SLV S +DN DS Q+ EIL+PG L+ +KE++
Sbjct: 404 RIFLVHLDSPREKYKMLIFMVQKLYSLVAGESCADNADSPQHHEILMPGFLVGQIIKERI 463
Query: 337 EDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTG 396
++ + + I ++ K DF++ IKK + K + IG I + L TG L++ +G
Sbjct: 464 DEAVGNIRSQIARDVRMKLKGVDFYDSRYIKKTIAK-VNIDIGVKIASFLATGNLSSPSG 522
Query: 397 LDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPD 456
LDLQQ +G+T+ AE+LNF R+++ FR+VHRGA FA L+TTSVRKLLPE+WGFLCPVHTPD
Sbjct: 523 LDLQQTSGFTIMAEKLNFARYLAHFRSVHRGAFFAELKTTSVRKLLPEAWGFLCPVHTPD 582
Query: 457 GEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPA- 515
G PCGLLNH + TCR+ + +I +L G+GM + + G
Sbjct: 583 GSPCGLLNHFSHTCRMTTRQPGVSHIH----------ALLSGLGMTEAAFAVGAVGAVGQ 632
Query: 516 --------VLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGG 567
++ V LDG V+G + + + LR K +P DLE+G+VP S G
Sbjct: 633 KHAGVRDNIVVVQLDGAVLGYTTPALAKHMATALRIWKTEGLHHVPLDLEIGFVPTSRAG 692
Query: 568 AYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPA 627
YPGLYLF+S + +RPVR + + I+++GPFEQV+++I C D +
Sbjct: 693 QYPGLYLFSSRARMMRPVRLL-----HNNKIDMVGPFEQVYLDIAC----DPAEIVPGVS 743
Query: 628 THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
TH E+ PT +LSV+ANLTP+SD+NQSPRN YQ QM KQTMG + A+ R D KLY +QT
Sbjct: 744 THVELAPTSILSVLANLTPFSDYNQSPRNCYQAQMMKQTMGTASTAVGRRTDNKLYRIQT 803
Query: 688 PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
PQTP+VR Y KY D+YP GTNAIVAV++YTGYDMEDAMILNKS+ +RG +G +Y++
Sbjct: 804 PQTPVVRPELYNKYAFDDYPNGTNAIVAVISYTGYDMEDAMILNKSAHERGFGYGTVYKS 863
Query: 748 ETIDLSDDGNKVDRGQKL----FRRN-KDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYD 802
ETIDL D K F N K +++ +++D DGLPYVGQ + GEP C+ +D
Sbjct: 864 ETIDLRDLKGKSSSSVPTLHFGFAPNYKASEAQRNILDQDGLPYVGQKVLAGEPICAYWD 923
Query: 803 KTTNSWRTNSRKGSESVFVDYVAV-----DMKNSKNLPQKANIRFRHTRNPIIGDKFSSR 857
+ + + KG E +VD V + M QK I R TR+P+IGDKFSSR
Sbjct: 924 EVSGKTQFKKFKGDEYAYVDTVRLLGSDAGMGGGDGECQKVQIMLRITRSPVIGDKFSSR 983
Query: 858 HGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
HGQKGVCSQ WP +DMPFS +GM+PD+IINPHAFPSRMTI ML+ES+A K
Sbjct: 984 HGQKGVCSQKWPAVDMPFS-ESGMQPDVIINPHAFPSRMTIGMLIESIAGK 1033
>gi|254566671|ref|XP_002490446.1| RNA polymerase I subunit A135 [Komagataella pastoris GS115]
gi|238030242|emb|CAY68165.1| RNA polymerase I subunit A135 [Komagataella pastoris GS115]
gi|328350840|emb|CCA37240.1| DNA-directed RNA polymerase I subunit A2 [Komagataella pastoris CBS
7435]
Length = 1165
Score = 725 bits (1872), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 399/881 (45%), Positives = 554/881 (62%), Gaps = 54/881 (6%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR+ I+Y + M V + D P E GQ PVMLK+ RCHL+ +LV K
Sbjct: 106 CRERMITYKSRFMLKVCWSVNDG--PEETEIREAGQIPVMLKSNRCHLEKMSPNELVKNK 163
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
EE+ E+GGYFI+NG+E++ R +I+ ++N+PM+++R SF +R + YT + IR VR DQ+
Sbjct: 164 EESDELGGYFIVNGIEKLVRMLIVQRRNHPMALIRPSFGNRGDSYTQFGIQIRAVRPDQT 223
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
S T L+YL +G+V F + EYL+PV ++LKALV+TND EIF+
Sbjct: 224 SQTNVLHYLKDGNVTFRFSWRKNEYLVPVPMILKALVETNDREIFD-------------- 269
Query: 218 GAVGS----PLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAET 273
G VGS +++R++++L + L ++ + L ++G+ F+ V + S V +
Sbjct: 270 GIVGSETSNSFLTDRLELLLRNYKHYKLVSKQETLAYLGDKFRVVFNATPDVSDVDVGKE 329
Query: 274 VIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLK 333
V+R + VHL DN DKF LL+FM++KL++LV DNPD+ Q+QE+LL G L + +K
Sbjct: 330 VLRRIVLVHLPDNRDKFRLLLFMIRKLYALVSGDCCPDNPDATQHQEVLLGGFLYGMIIK 389
Query: 334 EKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLAT 393
EK+E++L + IQ +I N G +F + +V ++ ++ IG ++ L TG L +
Sbjct: 390 EKIEEYLASIRLQIQTDI-NRGYPVNFDEPKYMSRVFQR-INENIGKKLQYFLSTGNLVS 447
Query: 394 QTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVH 453
QTGLDLQQ +GYTV AE++NF RFIS FR VHRG+ FA L+TT+VRKLLPESWGFLCPVH
Sbjct: 448 QTGLDLQQVSGYTVVAEKINFYRFISHFRMVHRGSFFAELKTTTVRKLLPESWGFLCPVH 507
Query: 454 TPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGP 513
TPDG PCGLLNH+ C++++ D SK + +VL +G+ S + +GP
Sbjct: 508 TPDGSPCGLLNHLAHKCKIST------EESDVSK----VPKVLSKLGV--SANHVFAAGP 555
Query: 514 PAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLY 573
+ V LDG++VG + + V LR KV IP DLEVG+VP S G YPGLY
Sbjct: 556 -QMCCVQLDGKIVGWCTHEQAKIVADTLRFWKVEGGHGIPLDLEVGHVPPSSRGQYPGLY 614
Query: 574 LFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRNAFPATHEEI 632
LF + RPVR + L E+ +IGPFEQ ++ I P+ + +H E
Sbjct: 615 LFGGRARMTRPVRYLPLDKED-----IIGPFEQAYINIAVTPEEIESNVH-----SHVEF 664
Query: 633 HPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPI 692
PT +LS++ANLTP+SD NQSPRNMYQCQM KQTMG AL R+D KLY LQT QTPI
Sbjct: 665 SPTNILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGVALVHRSDNKLYRLQTGQTPI 724
Query: 693 VRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDL 752
V+ N Y YG+D +P GTNA+VAV++YTGYDM+DAMI+NKSS +RG +G +Y+ E IDL
Sbjct: 725 VKANLYDDYGMDNFPNGTNAVVAVISYTGYDMDDAMIINKSSDERGFGYGTMYKVEVIDL 784
Query: 753 SDDGNKVDRGQKLFRRNKDA--KSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRT 810
+D K D + F D +S +D DGLP +G +++ G+P + YD T +
Sbjct: 785 ADSRRKGDPITQHFGFGTDEWPESWKQNLDEDGLPAIGTLVNEGDPIVAYYDDTLGKTKV 844
Query: 811 NSRKGSESVFVDYVAV---DMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQL 867
+ SE +++ V + D+ +S+ Q I++R TR P IGDKFSSRHGQKGVCS+
Sbjct: 845 KTYHSSEPAYIEEVKLISDDLGDSE--LQMVTIKYRITRQPQIGDKFSSRHGQKGVCSRK 902
Query: 868 WPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
WP IDMPF+ TG++PD+IINPHAFPSRMTI M +ES+A K
Sbjct: 903 WPQIDMPFT-ETGIQPDVIINPHAFPSRMTIGMFVESLAGK 942
>gi|448083903|ref|XP_004195470.1| Piso0_004858 [Millerozyma farinosa CBS 7064]
gi|359376892|emb|CCE85275.1| Piso0_004858 [Millerozyma farinosa CBS 7064]
Length = 1167
Score = 724 bits (1870), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 392/876 (44%), Positives = 554/876 (63%), Gaps = 44/876 (5%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR+ +Y +LM V ++ D V E GQ P+MLK+ RCHL+ S +LV +
Sbjct: 106 CRERMTTYRSRLMLKVTWKVNDEEE--VSEIREAGQVPIMLKSNRCHLEKLSSHELVEHR 163
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
EE+ E+GGYFI+NG+E++ R +I+ ++N+PM+++R SF +R YT V IRCVR DQ+
Sbjct: 164 EESDELGGYFIVNGIEKLIRMLIVQRRNHPMAIIRPSFANRGAAYTKFGVQIRCVRPDQT 223
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
S T L+YL +G+V F + EYL+PV +VLKALV+TND EIF+ +
Sbjct: 224 SQTNVLHYLNDGNVTFRFSWRKNEYLVPVMMVLKALVETNDREIFDGIV----------- 272
Query: 218 GA-VGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIR 276
GA + + +++R++++L + +L T+ + L ++G F+ S V E VIR
Sbjct: 273 GADISNSFLTDRLELLLKTFKQYNLCTKKETLAYLGNKFRVAFGSTPDVSDIEVGEEVIR 332
Query: 277 DYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKL 336
+ VHL +N DKF +L+FM++KL+SLV DNPD+ Q+QEILL G L + +KEK+
Sbjct: 333 RIVLVHLPNNEDKFRMLLFMIRKLYSLVAGDCCPDNPDATQHQEILLGGFLYGMIIKEKI 392
Query: 337 EDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTG 396
E++L+ + IQ +I N G +F + + +V + ++ IG ++ L TG L +Q+G
Sbjct: 393 EEYLQSIRLQIQSDI-NRGIAVNFKDRKYMSRVFMR-INENIGQKLQYFLSTGNLVSQSG 450
Query: 397 LDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPD 456
LDLQQ +GYTV AE++NF RFIS FR VHRG+ FA L+TT+VRKLLPESWGFLCPVHTPD
Sbjct: 451 LDLQQVSGYTVVAEKINFYRFISHFRMVHRGSFFAELKTTTVRKLLPESWGFLCPVHTPD 510
Query: 457 GEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAV 516
G PCGLLNH+ C+VA+ G + D SK+ ++ +GV P + P++
Sbjct: 511 GSPCGLLNHLAHKCKVAT-----GAV-DVSKVPVALAE--LGVS-----PAHSYAAGPSL 557
Query: 517 LSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFT 576
+ LDGR++G + + V LR KV +P +LE+GYVP + G YPGLYLF
Sbjct: 558 CCIQLDGRIIGWCTHEQGKIVADTLRFWKVEGTHGVPLELEIGYVPPTHKGQYPGLYLFG 617
Query: 577 SPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRNAFPATHEEIHPT 635
+ +RP R + L ++++GPFEQV+++I P+ + +H E PT
Sbjct: 618 GHSRMMRPTRYLPL-----DKVDIVGPFEQVYLDIAVTPEEIENNIH-----SHVEYAPT 667
Query: 636 GMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRT 695
+LS++ANLTP+SD NQSPRNMYQCQMAKQTMG AL R+D KLY LQT QTPIV+
Sbjct: 668 NILSILANLTPFSDFNQSPRNMYQCQMAKQTMGTPGVALCHRSDNKLYRLQTGQTPIVKA 727
Query: 696 NTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDD 755
N Y YG+D +P G NAIVAV++YTGYDM+DAMI+NKS+ +RG +G +Y+ E IDLS
Sbjct: 728 NLYDDYGMDNFPNGMNAIVAVISYTGYDMDDAMIINKSADERGFGYGTVYKVEKIDLSSS 787
Query: 756 GNKVDRGQKLFRRNKDA--KSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSR 813
+ D + F D + +D+DGLP +G + G+P + YD T + +
Sbjct: 788 RRRGDPITQHFGFGTDEWPEGWKEKLDADGLPLIGTRVEEGDPIIAYYDDTLGRTKVKTY 847
Query: 814 KGSESVFVDYVAVDMKNSKNLP-QKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDID 872
SE +++ V + + + Q+A I++R R P+IGDKFSSRHGQKGVCS+ WP ID
Sbjct: 848 HSSEMAYIEEVKLLGDDGGDHECQQATIKYRVPRAPLIGDKFSSRHGQKGVCSRKWPQID 907
Query: 873 MPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
MPFS +GM+PD+IINPHAFPSRMTI M +ES+A K
Sbjct: 908 MPFS-ESGMQPDVIINPHAFPSRMTIGMFVESLAGK 942
>gi|448079309|ref|XP_004194369.1| Piso0_004858 [Millerozyma farinosa CBS 7064]
gi|359375791|emb|CCE86373.1| Piso0_004858 [Millerozyma farinosa CBS 7064]
Length = 1167
Score = 724 bits (1869), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 390/876 (44%), Positives = 554/876 (63%), Gaps = 44/876 (5%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR+ +Y +LM V ++ D V E GQ P+MLK+ RCHL+ S++LV +
Sbjct: 106 CRERMTTYRSRLMLKVTWKVNDEEE--VSEIREAGQVPIMLKSNRCHLEKLTSEELVEHR 163
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
EE+ E+GGYFI+NG+E++ R +I+ ++N+PM+++R SF +R YT V IRCVR DQ+
Sbjct: 164 EESDELGGYFIVNGIEKLIRMLIVQRRNHPMAIIRPSFANRGAAYTKFGVQIRCVRPDQT 223
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
S T L+YL +G+V F + EYL+PV +VLKALV+TND EIF+ +
Sbjct: 224 SQTNVLHYLNDGNVTFRFSWRKNEYLVPVMMVLKALVETNDREIFDGIV----------- 272
Query: 218 GA-VGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIR 276
GA + + +++R++++L + +L T+ + L ++G F+ V S V E VIR
Sbjct: 273 GADISNSFLTDRLELLLKTFKQYNLYTKKETLAYLGNKFRVVFGSTPDVSDIEVGEEVIR 332
Query: 277 DYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKL 336
+ VHL +N DKF +L+FM++KL+SLV DNPD+ Q+QEILL G L + +KEK+
Sbjct: 333 RIVLVHLPNNEDKFRMLLFMIRKLYSLVAGDCCPDNPDATQHQEILLGGFLYGMIIKEKI 392
Query: 337 EDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTG 396
E++L+ + IQ +I N G +F + + +V + ++ IG ++ L TG L +Q+G
Sbjct: 393 EEYLQSIRLQIQSDI-NRGIAVNFKDRKYMSRVFMR-INENIGQKLQYFLSTGNLVSQSG 450
Query: 397 LDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPD 456
LDLQQ +GYTV AE++NF RFIS FR VHRG+ FA L+TT+VRKLLPESWGFLCPVHTPD
Sbjct: 451 LDLQQVSGYTVVAEKINFYRFISHFRMVHRGSFFAELKTTTVRKLLPESWGFLCPVHTPD 510
Query: 457 GEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAV 516
G PCGLLNH+ C+VA+ + D SK+ ++ +GV P + P +
Sbjct: 511 GSPCGLLNHLAHKCKVAT------SAVDVSKVPAALAE--LGVS-----PAHSYAAGPGL 557
Query: 517 LSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFT 576
+ LDGR++G + + V LR KV +P +LE+GYVP + G YPGLYLF
Sbjct: 558 CCIQLDGRIIGWCTHEQGKIVADTLRFWKVEGTHGVPLELEIGYVPPTHKGQYPGLYLFG 617
Query: 577 SPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRNAFPATHEEIHPT 635
+ +RP + + L ++++GPFEQV++++ P+ + +H E PT
Sbjct: 618 GHSRMMRPTKYLPL-----DKVDIVGPFEQVYLDVAVTPEEIENNIH-----SHVEYAPT 667
Query: 636 GMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRT 695
+LS++ANLTP+SD NQSPRNMYQCQMAKQTMG AL R+D KLY LQT QTPIV+
Sbjct: 668 NILSILANLTPFSDFNQSPRNMYQCQMAKQTMGTPGVALCHRSDNKLYRLQTGQTPIVKA 727
Query: 696 NTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDD 755
N Y YG+D +P G NAIVAV++YTGYDM+DAMI+NKS+ +RG +G +Y+ E IDLS
Sbjct: 728 NLYDDYGMDNFPNGMNAIVAVISYTGYDMDDAMIINKSADERGFGYGTVYKVEKIDLSSS 787
Query: 756 GNKVDRGQKLFRRNKDA--KSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSR 813
+ D + F D + +D+DGLP +G + G+P + YD T + +
Sbjct: 788 RRRGDPITQHFGFGTDEWPEGWKEKLDADGLPLIGTRVEEGDPIIAYYDDTLGRTKVKTY 847
Query: 814 KGSESVFVDYVAVDMKNSKNLP-QKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDID 872
SE +++ V + + + Q+A I++R R P+IGDKFSSRHGQKGVCS+ WP ID
Sbjct: 848 HSSEMAYIEEVKLLGDDGGDHECQQATIKYRVPRAPLIGDKFSSRHGQKGVCSRKWPQID 907
Query: 873 MPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
MPFS +GM+PD+IINPHAFPSRMTI M +ES+A K
Sbjct: 908 MPFS-ESGMQPDVIINPHAFPSRMTIGMFVESLAGK 942
>gi|343427009|emb|CBQ70537.1| probable RPA135-DNA-directed RNA polymerase I, 135 KD subunit
[Sporisorium reilianum SRZ2]
Length = 1290
Score = 724 bits (1868), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 388/894 (43%), Positives = 556/894 (62%), Gaps = 56/894 (6%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
R+ +YTGKL A + + G P + + G PV++++ RC+L+G S++LV+
Sbjct: 176 ARERLFTYTGKLTARLCWSV--NGDPEQSDIVSLGNCPVLVRSNRCNLRGMSSRELVAHH 233
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQ- 156
EE+ E GGY+++NG ER+ R +I+ K N P ++ R SF R Y++KA+VIRC+ KD
Sbjct: 234 EESNEFGGYYLVNGNERLIRYLIVAKANSPQAIERPSFEKRGPSYSNKAIVIRCLHKDDL 293
Query: 157 SSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKE 216
SVT ++YL NG + L F + +EY++PV +VLKALVD D EIF +
Sbjct: 294 ISVTNAVHYLHNGGLTLRFSWRKQEYMVPVVMVLKALVDATDKEIFASIV---------- 343
Query: 217 KGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIR 276
+G + +++RV+++L + SL + QCL+++G F+ V+ + + V +I
Sbjct: 344 QGDFENTFLTDRVELLLRNFKQYSLWSGHQCLEYLGSKFRVVLGCPEDWNDAQVGSELIH 403
Query: 277 DYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKL 336
VHL+ +KF +LIFM+QKL+SLV S +DN DS Q+ EIL+PG L+ +KE++
Sbjct: 404 RIFLVHLDSPREKFKMLIFMIQKLYSLVAGESCADNADSPQHHEILMPGFLVGQIIKERI 463
Query: 337 EDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTG 396
++ + + I ++ K DF++ +KK + K + IG I + L TG L++ +G
Sbjct: 464 DEAVGNIRAQIARDVRMKVKGLDFYDTRYVKKTVSK-VNIDIGVKIASFLATGNLSSPSG 522
Query: 397 LDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPD 456
LDLQQ +G+T+ AE+LNF R+++ FR+VHRGA FA L+TTSVRKLLPE+WGFLCPVHTPD
Sbjct: 523 LDLQQTSGFTIMAEKLNFARYLAHFRSVHRGAFFAELKTTSVRKLLPEAWGFLCPVHTPD 582
Query: 457 GEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLV------- 509
G PCGLLNH + TCR+ + +I +L G+GM + +
Sbjct: 583 GSPCGLLNHFSHTCRMTTRQPDVSHIH----------ALLSGLGMTEAAFAVGAVGAAAQ 632
Query: 510 -KSGPPA---VLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSL 565
SG A V+ V LDG ++G + + + LR K +P DLE+G+VP S
Sbjct: 633 KSSGANASDNVVVVQLDGAILGYTTPALAKHMATALRIWKTEGLHHVPLDLEIGFVPTSR 692
Query: 566 GGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAF 625
G YPGLYLF++ + +RPVR + + I+L+GPFEQV+++I C D
Sbjct: 693 AGQYPGLYLFSNRARMLRPVRLL-----HNNRIDLVGPFEQVYLDIAC----DPSEIIPG 743
Query: 626 PATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHL 685
+TH E+ PT +LSV+ANLTP+SD+NQSPRN+YQ QM KQTMG + ++ R D KLY +
Sbjct: 744 ISTHVELAPTSILSVLANLTPFSDYNQSPRNVYQAQMMKQTMGTASTSVSRRTDNKLYRI 803
Query: 686 QTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIY 745
QTPQTP+VR Y KYG D+YP GTNA+VAV++YTGYDMEDAMILNKS+ +RG +G +Y
Sbjct: 804 QTPQTPVVRNELYNKYGFDDYPNGTNAVVAVISYTGYDMEDAMILNKSAHERGFGYGTVY 863
Query: 746 QTETIDLSDDGNKVDRGQ------KLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCS 799
++ET+DL D K ++ ++ +++D DGLPYVGQ + GEP C+
Sbjct: 864 KSETVDLRDLKGKASSSSVPTLHFGFAPNSRPTEAQRAILDQDGLPYVGQKVLAGEPICA 923
Query: 800 IYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLP-----QKANIRFRHTRNPIIGDKF 854
+D+ + KG E +VD V + ++ + QK I R TR+P+IGDKF
Sbjct: 924 YWDEVSGKTMFKKFKGDEYAYVDTVRLLGSDAGSGGGDSECQKVQIMLRITRSPVIGDKF 983
Query: 855 SSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
SSRHGQKGVCSQ WP +DMPFS +GM+PD+IINPHAFPSRMTI ML+ES+A K
Sbjct: 984 SSRHGQKGVCSQKWPAVDMPFSE-SGMQPDVIINPHAFPSRMTIGMLIESIAGK 1036
>gi|328770085|gb|EGF80127.1| hypothetical protein BATDEDRAFT_30022 [Batrachochytrium
dendrobatidis JAM81]
Length = 1147
Score = 723 bits (1867), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 386/888 (43%), Positives = 539/888 (60%), Gaps = 61/888 (6%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR+ ISY K+ + ++ G P+ E G P+M+++ +C+L G ++V+
Sbjct: 98 CRERGISYKSKMQIRINWRV--NGGPIQSEICGLGSLPIMVRSLKCNLDGKSPSEMVAHH 155
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
E+A + GGYF++NG+ER+ R +I+P++N+P +++R SF+ R Y+ +++RCV DQS
Sbjct: 156 EDADDFGGYFVINGIERLIRLLIVPRRNHPTAIIRPSFQKRGPTYSKFGIIMRCVLPDQS 215
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
+ T+ ++Y +G V L F+ + EY++PV +V++AL +T+D EIF +
Sbjct: 216 AQTITMHYCTDGEVTLRFFHKKIEYMVPVVLVMRALCNTSDFEIFERIIM---------- 265
Query: 218 GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRD 277
G + + +RV+++L + ++ Q L +IG F ++D + + +R
Sbjct: 266 GVYTNTFLIDRVELLLRSFRRYAIYNSTQALAYIGSKFAVMLDSPEDQLEVDAGLEFLRR 325
Query: 278 YIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLE 337
I VHL D KF+LLI+MLQKL+SLV + DNPDSLQ QE LL GH+ + +KEKL
Sbjct: 326 MILVHLTDAKSKFDLLIYMLQKLYSLVSGDTAPDNPDSLQFQETLLAGHMFSALIKEKLA 385
Query: 338 DWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPS-KQIGTSIETMLKTGRLATQTG 396
DWL K I +I+ K DF + I+K+ K IG IE L TG L + +
Sbjct: 386 DWLLAIKTTINMDIKKQISKLDFSDKKYIQKLFSKTSGMSDIGKKIEYFLATGNLISSSN 445
Query: 397 LDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPD 456
LDLQQ +GYT+ AE+LNF R+IS FR++HRGA FA L+TT+VRKLLPESWGFLCPVHTPD
Sbjct: 446 LDLQQVSGYTIIAEKLNFYRYISHFRSIHRGAFFAELKTTTVRKLLPESWGFLCPVHTPD 505
Query: 457 GEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVK--SGPP 514
G PCGLLNH++ TC + + D I V IPS+ + S
Sbjct: 506 GSPCGLLNHLSHTCEI--FLDK------------------IDVSHIPSIVAAAEFDSREN 545
Query: 515 AVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYL 574
V+++ LDG+V+G +S + + LR K+ + +P LE+GYVP + GG YPGL+L
Sbjct: 546 IVMTIQLDGKVIGWGRTSVVRNIAQTLRDWKIRGINNVPLKLEIGYVPPTKGGQYPGLFL 605
Query: 575 FTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPA--THEEI 632
F+SP + +RPV+ ++ + + + IGPFEQV+M+I C + + P TH+E
Sbjct: 606 FSSPARMIRPVKYLA-----TGDTDFIGPFEQVYMDIACM------KEDVVPGITTHQEF 654
Query: 633 HPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPI 692
+PT MLSVVANLTP+SD NQSPRNMYQCQM KQ+MG Q+L R D KLY LQT Q+PI
Sbjct: 655 NPTDMLSVVANLTPFSDFNQSPRNMYQCQMGKQSMGTPSQSLHHRTDNKLYRLQTGQSPI 714
Query: 693 VRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDL 752
VR N + YG+D YP G NA+V V++YTGYDMEDA I+ KSS +RG +G +Y+ E +DL
Sbjct: 715 VRPNLHNDYGLDGYPNGMNAVVCVISYTGYDMEDASIIAKSSHERGYGYGTVYKGEWVDL 774
Query: 753 SD---DGNKVDRGQKLFRRNKDAKSLHS--------VIDSDGLPYVGQMIHPGEPYCSIY 801
SD G+ V N+ +L ID DGLP +G + G+P +
Sbjct: 775 SDFHRQGDIVTHYFGFVAWNESEPNLSEKALARALQFIDLDGLPIIGVRLTRGDPMYAFV 834
Query: 802 DKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLP-QKANIRFRHTRNPIIGDKFSSRHGQ 860
D T KG E +VD V + +S P QK +IR R R P+IGDKFSSRHGQ
Sbjct: 835 DDVTGKVTVKEYKGMEDAYVDQVRLIGDDSGKKPLQKIHIRLRIPRPPLIGDKFSSRHGQ 894
Query: 861 KGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
KGV SQ WP IDMPFS +G+ PD+IINPHAFPSRMTI M +ES+A K
Sbjct: 895 KGVISQKWPSIDMPFSE-SGIIPDVIINPHAFPSRMTIGMFIESLAGK 941
>gi|367010772|ref|XP_003679887.1| hypothetical protein TDEL_0B05470 [Torulaspora delbrueckii]
gi|359747545|emb|CCE90676.1| hypothetical protein TDEL_0B05470 [Torulaspora delbrueckii]
Length = 1196
Score = 723 bits (1866), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 395/884 (44%), Positives = 551/884 (62%), Gaps = 51/884 (5%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
RQ SY GKLM +++ D V E + G P+ML++ RCHL +LV K
Sbjct: 118 ARQRLSSYRGKLMLKLKWSVNDGNDEVFTEVRDCGGLPIMLQSNRCHLNKLSPAELVQCK 177
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
EE+ E+GGYFI+NG+E++ R +I+ ++N+PM++VR SF +R Y+ + IRCVR DQ+
Sbjct: 178 EESDEVGGYFIVNGIEKLIRMLIVQRRNHPMAIVRPSFANRGASYSQYGIQIRCVRPDQT 237
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
S T L+YL +G V F + EYL+PV ++LKAL DT+D EIF+
Sbjct: 238 SQTNVLHYLNDGQVTFRFSWRKNEYLVPVIMILKALCDTSDREIFD-------------- 283
Query: 218 GAVGS----PLVSERVKIILAEVQDL--SLTTRLQCLQHIGEHFQPVIDGLQSESYYAVA 271
G +GS +++R++++L + L R Q LQ++G+ F+ V +S Y V
Sbjct: 284 GIIGSDTKNSFLTDRLELLLTGFRKRYPQLKNRRQILQYLGDKFRVVFQASPDKSDYEVG 343
Query: 272 ETVIRDYIFVHLN--DNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
+ V+ + VHLN N DKF +++FM++KL+SLV DNPD+ Q+QE+LL G L
Sbjct: 344 QEVLDRIVLVHLNGESNKDKFFMMLFMIRKLYSLVAGECCPDNPDATQHQEVLLGGFLYG 403
Query: 330 IYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTG 389
+ +KEK+E++L+ I+ +I N G +F + + +V+ + ++ IG+ ++ L TG
Sbjct: 404 MIIKEKIEEYLQNIVAQIRTDI-NRGLSTNFKDRKYVSRVLMR-VNENIGSKLQYFLSTG 461
Query: 390 RLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFL 449
L +Q+GLDLQQ +GYTV AE++NF RFIS FR VHRG+ FA L+TT+VRKLLPESWGFL
Sbjct: 462 NLVSQSGLDLQQVSGYTVVAEKINFYRFISHFRMVHRGSFFAQLKTTTVRKLLPESWGFL 521
Query: 450 CPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLV 509
CPVHTPDG PCGLLNH CR+++ D SK I +L +G+ P+
Sbjct: 522 CPVHTPDGSPCGLLNHFAHKCRIST------KQSDVSK----IPSILFSLGVSPASQTFA 571
Query: 510 KSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASV-IPDDLEVGYVPLSLGGA 568
++ V LDGR++G + + + + LR KV + +P DLE+GYVP S G
Sbjct: 572 AGA--SLCCVQLDGRIIGWVSHEQGKIIADTLRFWKVEGKTAGLPLDLEIGYVPPSTRGQ 629
Query: 569 YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPAT 628
YPGLY+F + +RPVR + L E+ ++GPFEQV+M I + N T
Sbjct: 630 YPGLYIFGGRSRMMRPVRYLPLDKED-----IVGPFEQVYMNIAVTP--QELQNNVH--T 680
Query: 629 HEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTP 688
H E PT +LS++ANLTP+SD NQSPRNMYQCQM KQTMG AL R+D KLY LQT
Sbjct: 681 HVEFTPTNILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGVALCHRSDNKLYRLQTG 740
Query: 689 QTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTE 748
QTPIV+ N Y YG+D +P G NA+VAV++YTGYDM+DAMI+NKS+ +RG +G +Y+ E
Sbjct: 741 QTPIVKANLYDDYGMDNFPNGMNAVVAVISYTGYDMDDAMIINKSADERGFGYGTMYKVE 800
Query: 749 TIDLSDDGNKVDRGQKLFRRNKDA--KSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTN 806
IDLS + ++ D + F D K +D DGLPY+G + G+P C+ +D T N
Sbjct: 801 KIDLSLNRSRGDPISQHFGFGTDEWPKEWMEKLDEDGLPYIGTYVEEGDPICAYFDDTLN 860
Query: 807 SWRTNSRKGSESVFVDYVAVDMKNSKNLP--QKANIRFRHTRNPIIGDKFSSRHGQKGVC 864
+ + SE +++ V + S LP Q +I++R R P IGDKFSSRHGQKGVC
Sbjct: 861 KTKIKTYHSSEPAYIEEVNLIGDESNKLPELQTVSIKYRIRRVPQIGDKFSSRHGQKGVC 920
Query: 865 SQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
S+ WP IDMPFS TG++PD+IINPHAFPSRMTI M +ES+A K
Sbjct: 921 SRKWPTIDMPFS-ETGIQPDVIINPHAFPSRMTIGMFVESLAGK 963
>gi|449549407|gb|EMD40372.1| hypothetical protein CERSUDRAFT_148338 [Ceriporiopsis subvermispora
B]
Length = 1228
Score = 723 bits (1865), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 392/891 (43%), Positives = 560/891 (62%), Gaps = 64/891 (7%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
R+ SY G++M + ++ D PV E + G P+M+++ RC+L+ S +LV
Sbjct: 132 ARERLTSYRGRMMVKLCWRVNDG--PVEVENRDCGLLPIMVRSVRCNLRSMSSAELVKHH 189
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
EE E GGYFI+NG ER+ R +ILP+++ +++VR SF +R YT AV IRCVR DQ+
Sbjct: 190 EEPEEFGGYFIINGNERLIRYLILPRRHSVIALVRPSFVNRGPSYTPYAVQIRCVRPDQT 249
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
+VT L+YL NGS L F + +EY++P+ ++LKALV +D EIF + + Y+
Sbjct: 250 AVTNTLHYLSNGSAMLRFSWRKQEYVIPIMLILKALVSASDKEIFEGVIM---QDYEDT- 305
Query: 218 GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRD 277
+++RV+++L + SL T QCL+++G+ F+ V++ + + A+ +I+
Sbjct: 306 ------FLTDRVELLLRSFKMYSLYTGDQCLEYLGDKFRVVLNMPEDWTNKALGAWIIQK 359
Query: 278 YIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLE 337
+ VHL +KF +L+FML+KL+SLV H+ DNPDS Q+QE+LLPG L + +KE+LE
Sbjct: 360 LVLVHLESPREKFRMLLFMLRKLYSLVSHSCCVDNPDSPQHQEVLLPGSLYGMIIKERLE 419
Query: 338 DWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGL 397
+ L + IQ ++ DFF+ +KK++ + + +G + L TG L + +GL
Sbjct: 420 EALNNFRIAIQQDVNRGEPSVDFFDKRYVKKILART-NFDVGARMSNFLATGNLVSPSGL 478
Query: 398 DLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDG 457
DLQQ +G+T+ AE+LN+ R+IS FR++HRGA FA L+TT+VRKLLPE+WGFLCPVHTPDG
Sbjct: 479 DLQQASGFTIVAEKLNWQRYISHFRSIHRGAFFAELKTTTVRKLLPEAWGFLCPVHTPDG 538
Query: 458 EPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPK---LVKSGPP 514
PCGLLNH++ TCR+ TS L V+ IP+L + + P
Sbjct: 539 SPCGLLNHLSRTCRIV----------------TSPLSVV----HIPALLAAHGMTQVFAP 578
Query: 515 AV-----LSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAY 569
+V L V LDGR++G P + + ++ LR K +P DLE+G+VP+S GG Y
Sbjct: 579 SVDGRRNLCVQLDGRLIGWAPQAVLRQLATSLRIWKTEGKHSVPLDLEIGFVPVSKGGQY 638
Query: 570 PGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRNAFPAT 628
PGLYLF+S + +RPV+ ++ ++ IG FEQV+M+I C P + G ++
Sbjct: 639 PGLYLFSSRARMMRPVKFVANGRDDQ-----IGSFEQVYMDIACTPAEIEDGV-----SS 688
Query: 629 HEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTP 688
H E PT LS++ANLTP+SD NQSPRN+YQCQM KQ+MG A++ R D KLY LQT
Sbjct: 689 HVEHSPTNFLSILANLTPFSDFNQSPRNIYQCQMGKQSMGTPATAIRHRTDNKLYRLQTG 748
Query: 689 QTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTE 748
Q+P+VR + YG+D +P GTNA+VAV++YTGYDMEDAMILNKS+ +RG +G +Y+
Sbjct: 749 QSPVVRPALHNTYGMDSFPNGTNAVVAVISYTGYDMEDAMILNKSAHERGFGYGTVYKAY 808
Query: 749 TIDLSD-DGNKVDR------GQKLFRRNKDAKSLH---SVIDSDGLPYVGQMIHPGEPYC 798
T+DL D G + G R ++ H +D DGLP+VG ++PG+P
Sbjct: 809 TVDLKDMPGVRTHSVPTLHFGLGYEIRTEEGPKQHWCCKFLDRDGLPFVGTRLNPGDPIA 868
Query: 799 SIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLP-QKANIRFRHTRNPIIGDKFSSR 857
+ D TT + KG E +VD V + ++ + QK N+ R TR P+IGDKFSSR
Sbjct: 869 AYIDDTTGRTKFVKYKGDEIAYVDSVRLLGSDAGDSELQKINLTLRITRAPVIGDKFSSR 928
Query: 858 HGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
HGQKGVCSQ WP IDMPFS +GM+PD+IINPHAFPSRMTI ML+ES+A K
Sbjct: 929 HGQKGVCSQKWPAIDMPFS-ESGMQPDVIINPHAFPSRMTIGMLVESMAGK 978
>gi|406607667|emb|CCH40939.1| DNA-directed RNA polymerase I subunit A2 [Wickerhamomyces ciferrii]
Length = 1171
Score = 721 bits (1861), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 387/879 (44%), Positives = 554/879 (63%), Gaps = 50/879 (5%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
R+ +SY GKL+ V + D V E GQ P+MLK+ RCHL+ +LV+ K
Sbjct: 113 ARERMVSYRGKLLIKVCWSVNDEEE--VSEIREVGQIPIMLKSNRCHLEKLSPDQLVAQK 170
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
EE+ E+GGYFI+NG+E++ R +I+ ++N+PM+++R SF +R Y+ + IR VR DQ+
Sbjct: 171 EESDELGGYFIVNGIEKLIRMLIVQRRNHPMAIIRPSFTNRGASYSQFGIQIRSVRPDQT 230
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
S T L+YL +G+V F + EYL+PV ++LKALV+TND EIF+
Sbjct: 231 SQTNVLHYLNDGNVTFRFSWKKNEYLVPVMMILKALVETNDREIFD-------------- 276
Query: 218 GAVGSPL----VSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAET 273
G VGS L +++R++++L + L + + L ++G+ F+ V + S V +
Sbjct: 277 GIVGSDLDNSFLTDRLELLLRSFKTYKLHSNQETLAYLGDKFRVVFNATPDVSDVEVGKE 336
Query: 274 VIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLK 333
V++ + VHL+ N DKF +L+FM++KL++LV DNPD+ Q+QE+LL G L + +K
Sbjct: 337 VLKRIVLVHLDSNRDKFRMLLFMIRKLYTLVAGDCSPDNPDATQHQEVLLGGFLYGMIIK 396
Query: 334 EKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLAT 393
EK+E++L + IQ +I N G +F + + +V + ++ IG ++ L TG L +
Sbjct: 397 EKIEEYLNNIRLQIQSDI-NRGIAINFNDRKYMSRVFMR-INENIGQKLQYFLSTGNLVS 454
Query: 394 QTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVH 453
Q+GLDLQQ +GYTV AE++NF RFIS FR VHRG+ FA L+TT+VRKLLPESWGFLCPVH
Sbjct: 455 QSGLDLQQVSGYTVVAEKINFHRFISHFRMVHRGSFFAQLKTTTVRKLLPESWGFLCPVH 514
Query: 454 TPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGP 513
TPDG PCGLLNH C +++ D SK + L +G+ P+ V +
Sbjct: 515 TPDGSPCGLLNHFAHKCSIST------QASDVSK----VPEALSALGVSPAH---VFAAG 561
Query: 514 PAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLY 573
P V V LDG++VG + + V LR KV +P DLE+GYVP S G YPGLY
Sbjct: 562 PNVACVQLDGKIVGWTTHDQAKIVADTLRFWKVEGKHGLPLDLEIGYVPPSAKGQYPGLY 621
Query: 574 LFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRNAFPATHEEI 632
+F + +RPVR + L ++ ++GPFEQV+M++ P+ + +H E
Sbjct: 622 IFGGHSRMMRPVRYLPLDKQD-----IVGPFEQVYMDVAVTPEEIENNVH-----SHVEF 671
Query: 633 HPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPI 692
PT +LS++ANLTP+SD NQSPRNMYQCQM KQTMG AL R+D KLY LQ+ QTPI
Sbjct: 672 TPTNILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGVALVHRSDNKLYRLQSGQTPI 731
Query: 693 VRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDL 752
V+ N Y +YG+D +P GTNA+VAV++YTGYDM+DAMI+NKS+ +RG +G +Y+ E +DL
Sbjct: 732 VKANLYDEYGMDNFPNGTNAVVAVISYTGYDMDDAMIINKSADERGFGYGTVYKVEKVDL 791
Query: 753 SDDGNKVDRGQKLFRRNKDA--KSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRT 810
S + D + F D K + +D+DGLP +G + G+P + YD+T +
Sbjct: 792 SQSRRRGDPITQHFGFGTDEWPKEWRNFLDTDGLPMIGGRVEEGDPIVAYYDETVGKTKV 851
Query: 811 NSRKGSESVFVDYVA-VDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWP 869
+ SE F++ V + N + Q+ I++R TR+P+IGDKFSSRHGQKGVCS+ WP
Sbjct: 852 KTYHSSEGAFIEEVKLLGDDNGDSEFQQLTIKYRITRSPLIGDKFSSRHGQKGVCSRKWP 911
Query: 870 DIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
+D+PF+ TGM+PD+IINPHAFPSRMTI M +ES+A K
Sbjct: 912 TVDLPFT-ETGMQPDVIINPHAFPSRMTIGMFVESLAGK 949
>gi|354544394|emb|CCE41117.1| hypothetical protein CPAR2_301060 [Candida parapsilosis]
Length = 1166
Score = 720 bits (1858), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 387/880 (43%), Positives = 549/880 (62%), Gaps = 44/880 (5%)
Query: 34 MFDHCRQAKISYTGKLMADVEFQYLDAGSPV-VRERFNFGQFPVMLKTRRCHLQGADSQK 92
M CR+ +Y +LM +V + D +RE GQ P+MLK+ RCHLQ +
Sbjct: 104 MPSECRERMTTYKARLMLNVTWSVNDGEEQSEIREA---GQIPIMLKSNRCHLQKMSPNQ 160
Query: 93 LVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCV 152
LV KEE+ E+GGYFI+NG+E++ R +I+ ++N+PM+++R SF +R YT + IR V
Sbjct: 161 LVEAKEESDELGGYFIVNGIEKLIRMLIVQRRNHPMAIIRPSFANRGASYTKFGIQIRSV 220
Query: 153 RKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEK 212
R DQ+S T L+YL +G+V F + EYL+PV ++LKALV+TND EIF+ + +D
Sbjct: 221 RPDQTSQTNVLHYLNDGNVTFRFSWKKNEYLVPVVMILKALVETNDREIFDGIVG-HD-- 277
Query: 213 YKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAE 272
V + +++R++++L + L ++ + L ++G+ F+ V S V +
Sbjct: 278 -------VENSFLTDRLELLLRTFKSYHLHSQQETLAYLGDKFRVVFGATPDVSDIDVGK 330
Query: 273 TVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYL 332
V++ + VHL DN DKF +L+FM++KL+SLV DNPD+ Q+QE+LL G L + +
Sbjct: 331 EVLQRIVLVHLPDNKDKFRMLLFMIRKLYSLVAGDCAPDNPDATQHQEVLLGGFLYGMII 390
Query: 333 KEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLA 392
KEK++++L+ K +Q +I N G +F + I +V + ++ IG ++ L TG L
Sbjct: 391 KEKIDEYLQNFKLQVQSDI-NRGVGVNFSDRKYITRVFSR-INENIGQKLQYFLSTGNLV 448
Query: 393 TQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPV 452
+Q+GLDLQQ +GYTV AE++NF RFIS FR VHRG+ FA L+TT+VRKLLPESWGFLCPV
Sbjct: 449 SQSGLDLQQVSGYTVVAEKINFHRFISHFRMVHRGSFFAELKTTTVRKLLPESWGFLCPV 508
Query: 453 HTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSG 512
HTPDG PCGLLNH++ C +A+ T + +V + + P +
Sbjct: 509 HTPDGSPCGLLNHLSHKCIIAT-------------SATDVSQVPAALAQLGVSPASAFAA 555
Query: 513 PPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGL 572
P + V LDG++VG + + V LR KV +P DLE+GYVP S G YPGL
Sbjct: 556 GPNLCCVQLDGKIVGWTTHEQGKIVADTLRFWKVEGTHGLPLDLEIGYVPPSSKGQYPGL 615
Query: 573 YLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRNAFPATHEE 631
YLF + +RPV+ + L E+ ++GPFEQV+M + P+ + +H E
Sbjct: 616 YLFGGHSRMMRPVKYLPLGKED-----IVGPFEQVYMNVAVTPEEIENNVH-----SHVE 665
Query: 632 IHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTP 691
PT +LS++ANLTP+SD NQSPRNMYQCQM KQTMG AL R+D KLY LQT QTP
Sbjct: 666 FSPTNILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGTALVHRSDNKLYRLQTGQTP 725
Query: 692 IVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETID 751
IV+ N Y YG+D +P G NAIVAV++YTGYDM+DAMI+NKSS +RG +G +Y+ E ID
Sbjct: 726 IVKANLYDDYGMDNFPNGMNAIVAVISYTGYDMDDAMIINKSSDERGFGYGTVYKVEKID 785
Query: 752 LSDDGNKVDRGQKLFRRNKDA--KSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWR 809
LS + D + F D ++ + +D DG P +G + G+P + YD T +
Sbjct: 786 LSQSRRRGDPITQHFGFGDDEWPEAWKTKLDDDGFPVIGVKVEEGDPILAYYDDTLGKTK 845
Query: 810 TNSRKGSESVFVDYVAVDMKNS-KNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLW 868
+ SE +++ V + ++ N Q+ I++R TR PIIGDKFSSRHGQKGVCS+ W
Sbjct: 846 VKTYHSSEPAYIEEVKLLGDDAGDNEGQQVTIKYRITRQPIIGDKFSSRHGQKGVCSRKW 905
Query: 869 PDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
P IDMPF+ +GM+PD+IINPHAFPSRMTI M +ES+A K
Sbjct: 906 PQIDMPFT-ESGMQPDVIINPHAFPSRMTIGMFVESLAGK 944
>gi|448537526|ref|XP_003871349.1| Rpa135 RNA polymerase I subunit A135 [Candida orthopsilosis Co
90-125]
gi|380355706|emb|CCG25224.1| Rpa135 RNA polymerase I subunit A135 [Candida orthopsilosis]
Length = 1166
Score = 720 bits (1858), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 387/876 (44%), Positives = 554/876 (63%), Gaps = 44/876 (5%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPV-VRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
CR+ +Y +LM +V + D +RE GQ P+MLK+ RCHLQ +LV
Sbjct: 108 CRERMTTYKARLMLNVTWSVNDGEEQSEIREA---GQIPIMLKSNRCHLQKMSPNQLVEA 164
Query: 97 KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQ 156
KEE+ E+GGYFI+NG+E++ R +I+ ++N+PM+++R SF +R YT + IR VR DQ
Sbjct: 165 KEESDELGGYFIVNGIEKLIRMLIVQRRNHPMAIIRPSFANRGASYTKYGIQIRSVRPDQ 224
Query: 157 SSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKE 216
+S T L+YL +G+V F + EYL+PV ++LKALV+TND EIF+ + +D
Sbjct: 225 TSQTNVLHYLNDGNVTFRFSWKKNEYLVPVVMILKALVETNDREIFDGIVG-HD------ 277
Query: 217 KGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIR 276
V + +++R++++L + +L ++ + L ++G+ F+ V S V + V+R
Sbjct: 278 ---VENSFLTDRLELLLRTFKSYNLHSQQETLAYLGDKFRVVFGATPDVSDIDVGKEVLR 334
Query: 277 DYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKL 336
+ VHL +N DKF +L+FM++KL+SLV DNPD+ Q+QE+LL G L + +KEK+
Sbjct: 335 RIVLVHLPNNEDKFRMLLFMIRKLYSLVAGDCAPDNPDATQHQEVLLGGFLYGMIIKEKI 394
Query: 337 EDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTG 396
+++L+ K +Q +I N G +F + I +V + ++ IG ++ L TG L +Q+G
Sbjct: 395 DEYLQNFKLQVQSDI-NRGVGVNFSDRKYITRVFSR-INENIGQKLQYFLSTGNLVSQSG 452
Query: 397 LDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPD 456
LDLQQ +GYTV AE++NF RFIS FR VHRG+ FA L+TT+VRKLLPESWGFLCPVHTPD
Sbjct: 453 LDLQQVSGYTVVAEKINFHRFISHFRMVHRGSFFAELKTTTVRKLLPESWGFLCPVHTPD 512
Query: 457 GEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAV 516
G PCGLLNH++ C +A+ D S++ ++ + +GV P + P +
Sbjct: 513 GSPCGLLNHLSHKCIIAT------TASDVSQVPAALAQ--LGVS-----PANAFAAGPDL 559
Query: 517 LSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFT 576
V LDG++VG + + V LR KV +P DLE+GYVP S G YPGLYLF
Sbjct: 560 CCVQLDGKIVGWTTHEQGKIVADTLRFWKVEGTHGLPLDLEIGYVPPSSKGQYPGLYLFG 619
Query: 577 SPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRNAFPATHEEIHPT 635
+ +RPV+ + L E+ ++GPFEQV+M + P+ + +H E PT
Sbjct: 620 GHSRMMRPVKYLPLGKED-----IVGPFEQVYMNVAVTPEEIENNIH-----SHVEFSPT 669
Query: 636 GMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRT 695
+LS++ANLTP+SD NQSPRNMYQCQM KQTMG AL R+D KLY LQT QTPIV+
Sbjct: 670 NILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGTALVHRSDNKLYRLQTGQTPIVKA 729
Query: 696 NTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDD 755
N Y YG+D +P G NAIVAV++YTGYDM+DAMI+NKS+ +RG +G +Y+ E IDLS
Sbjct: 730 NLYDDYGMDNFPNGMNAIVAVISYTGYDMDDAMIINKSADERGFGYGTVYKVEKIDLSQS 789
Query: 756 GNKVDRGQKLFRRNKDA--KSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSR 813
+ D + F +D ++ + +D DG P +G + G+P + YD T + +
Sbjct: 790 RRRGDPITQHFGFGEDEWPETWKTKLDDDGFPLIGVKVEEGDPILAYYDDTLGKTKVKTY 849
Query: 814 KGSESVFVDYVAVDMKNS-KNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDID 872
SE +++ V + ++ N Q+ I++R TR PIIGDKFSSRHGQKGVCS+ WP ID
Sbjct: 850 HSSEPAYIEEVKLLGDDAGDNEGQQVTIKYRITRQPIIGDKFSSRHGQKGVCSRKWPQID 909
Query: 873 MPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
MPF+ +GM+PD+IINPHAFPSRMTI M +ES+A K
Sbjct: 910 MPFT-ESGMQPDVIINPHAFPSRMTIGMFVESLAGK 944
>gi|70991741|ref|XP_750719.1| DNA-directed RNA polymerase I subunit beta (Rpa2) [Aspergillus
fumigatus Af293]
gi|66848352|gb|EAL88681.1| DNA-directed RNA polymerase I subunit beta (Rpa2), putative
[Aspergillus fumigatus Af293]
Length = 1235
Score = 720 bits (1858), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 402/903 (44%), Positives = 560/903 (62%), Gaps = 68/903 (7%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPV--VRERFNFGQFPVMLKTRRCHLQGADSQKLVS 95
R+ +Y GKL A +E+Q ++ G + +RE GQ P+ML+T RCHL+ A Q+LV
Sbjct: 128 ARERHATYRGKLRARLEYQ-VNNGDWMESIRE---LGQVPIMLRTNRCHLEKATPQELVQ 183
Query: 96 LKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKD 155
KEE+ E+GGYFI+NG E++ R +++ K+N+PM++VRSSF R YT + IR VR D
Sbjct: 184 HKEESEELGGYFIVNGNEKLIRMLVVGKRNFPMAIVRSSFVRRGHTYTKFGIQIRSVRPD 243
Query: 156 QSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKK 215
Q+S T L+YL +G+V F + EYL+PV +++KALV+TND EIF + K
Sbjct: 244 QTSQTNVLHYLSDGNVTFRFSWRKNEYLIPVMMIMKALVETNDREIFEGIVGSATSK--- 300
Query: 216 EKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVI 275
V + V++RV+++L + +L TR C ++GE F+PV+ S +
Sbjct: 301 ---GVNNTFVTDRVELLLRTYKAYNLHTRSSCRAYLGEKFKPVLGVPADMSNEDAGTEFL 357
Query: 276 RDYIFVHLNDNN-------DKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLI 328
R + HL + N DKF L++FM++KL++LV DNPD++ NQEILL G L
Sbjct: 358 RKIVLPHLGNQNVTEIQDYDKFKLIMFMIRKLYALVAGDCAPDNPDAVSNQEILLGGFLY 417
Query: 329 TIYLKEKLEDWLRKGKKLIQD-EIENNGKKFD--FFNLANIKKVMEKNPSKQIGTSIETM 385
+ LKE+LE+W+R +++D N G KF F + K++++ ++ IG +E
Sbjct: 418 GMILKEQLEEWMRSFGPILRDWSNRNGGAKFTDPAFERDFLSKIVKRT-NENIGGKLEYF 476
Query: 386 LKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPES 445
L TG L + TGLDLQQ +GYTV AE++NF RFIS FR +HRG+ FA L+TT+VRKLLPES
Sbjct: 477 LSTGNLVSPTGLDLQQVSGYTVMAEKINFYRFISHFRMIHRGSFFAQLKTTTVRKLLPES 536
Query: 446 WGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSL 505
WGFLCPVHTPDG PCGLLNH+ C +A+ S N+ K L V +GV S+
Sbjct: 537 WGFLCPVHTPDGAPCGLLNHLAHKCLIAT---SDVNVSHLPK-----LLVQLGVRSESSV 588
Query: 506 PKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSL 565
L S ++V LDGR+VG + + +R KVS IP +LE+GYVP S
Sbjct: 589 -ALEDS-----VTVQLDGRIVGYCSPKQARMIADTVRHWKVSGTHNIPRELEIGYVPNSN 642
Query: 566 GGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRNA 624
GG YPG+Y+F+ + RPV+ + L ++ +GPFEQ FMEI C PD G
Sbjct: 643 GGQYPGIYMFSQAARMYRPVKYLPL-----DKLDYVGPFEQPFMEIACLPDDLVAG---- 693
Query: 625 FPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYH 684
+TH E PT +LS+VAN+TP+SD+NQSPRNMYQCQM+KQTMG A+++R D KLY
Sbjct: 694 -VSTHIEYTPTNILSIVANMTPFSDYNQSPRNMYQCQMSKQTMGTPSTAIEYRTDNKLYR 752
Query: 685 LQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQI 744
LQT QTPIVR Y YG+D +P GTNA+VA+++YTGYDM+DAMI+NKSS +RG +G I
Sbjct: 753 LQTGQTPIVRPPLYNAYGLDNFPNGTNAVVAIISYTGYDMDDAMIINKSSHERGFGYGTI 812
Query: 745 YQTETIDLSDDGNKVDRGQ----KLFRRNKDAK---SLHSVIDSDGLPYVGQMIHPGEPY 797
Y+T+ L D ++ + + KLF + + +D DGLP+VG + G
Sbjct: 813 YKTKIHSLDDKDSRRSKSRREITKLFGFAPGGEIRAEWRTTLDEDGLPHVGARVKEGSLI 872
Query: 798 CSI----YDKTTNSW-------RTNSRKGSESVFVDYVAVDMKNSKNLP-QKANIRFRHT 845
+ YD ++S+ K +E ++D + + + P Q ++++R
Sbjct: 873 AAWHTVRYDAASDSYVNVDGITHFVKYKDAEEGYIDSIRIMGAETGLEPCQALSVKYRIP 932
Query: 846 RNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESV 905
R P+IGDKFSSRHGQKGVCSQLWP +DMPFS +G++PDLIINPHAFPSRMTIA ++ES+
Sbjct: 933 RKPVIGDKFSSRHGQKGVCSQLWPAVDMPFS-ESGIQPDLIINPHAFPSRMTIAQMIESM 991
Query: 906 AAK 908
A K
Sbjct: 992 AGK 994
>gi|241957019|ref|XP_002421229.1| DNA-directed RNA polymerase I subunit, putative [Candida
dubliniensis CD36]
gi|223644573|emb|CAX40561.1| DNA-directed RNA polymerase I subunit, putative [Candida
dubliniensis CD36]
Length = 1166
Score = 720 bits (1858), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/876 (43%), Positives = 554/876 (63%), Gaps = 42/876 (4%)
Query: 37 HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
CR+ ++Y +LM +V + D V E GQ P+MLK+ RCHL+ +LV
Sbjct: 107 ECRERMVTYRSRLMLNVTWSVNDGEE--VSEVREAGQIPIMLKSNRCHLEKLSPNQLVEA 164
Query: 97 KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQ 156
KEE+ E+GGYFI+NG+E++ R +I+ ++N+PM+++R SF +R YT + IR VR DQ
Sbjct: 165 KEESDELGGYFIVNGIEKLIRMLIVQRRNHPMAIIRPSFGNRGASYTKFGIQIRSVRPDQ 224
Query: 157 SSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKE 216
+S T L+YL +G+V F + E+L+PV ++LKAL++TND EIF+ + E
Sbjct: 225 TSQTNVLHYLNDGNVTFRFSWRKNEFLVPVVMILKALIETNDREIFDGIVGNDTE----- 279
Query: 217 KGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIR 276
+ +++R++++L + +L ++ + L ++G+ F+ V S V + V++
Sbjct: 280 -----NSFLTDRLELLLRTYKTYNLYSQQETLAYLGDKFRVVFGASPDMSDIEVGKEVLK 334
Query: 277 DYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKL 336
+ VHL +N DKF +L+FM++KL+SLV DNPD+ Q+QE+LL G L + +KEK+
Sbjct: 335 RIVLVHLPNNTDKFRMLLFMIRKLYSLVAGDCAPDNPDATQHQEVLLGGFLYGMIIKEKI 394
Query: 337 EDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTG 396
E++L+ K IQ +I N G +F + + +V + ++ IG ++ L TG L +Q+G
Sbjct: 395 EEYLQNIKLQIQSDI-NRGVGINFDDRKYMTRVFSR-INENIGQKLQYFLSTGNLVSQSG 452
Query: 397 LDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPD 456
LDLQQ +GYTV AE++NF RFIS FR VHRG+ FA L+TT+VRKLLPESWGFLCPVHTPD
Sbjct: 453 LDLQQVSGYTVVAEKINFYRFISHFRMVHRGSFFAELKTTTVRKLLPESWGFLCPVHTPD 512
Query: 457 GEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAV 516
G PCGLLNH++ C++A+ D S++ ++ + +GV LP + P +
Sbjct: 513 GSPCGLLNHLSHKCKIAT------EASDVSQVPKALTQ--LGV-----LPADSFAAGPNL 559
Query: 517 LSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFT 576
V LDGR+VG + V LR KV+ +P DLE+GYVP S G YPGLY+F
Sbjct: 560 CCVQLDGRIVGWTTHEQGRIVADTLRYWKVNGGHGLPLDLEIGYVPPSNKGQYPGLYIFG 619
Query: 577 SPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRNAFPATHEEIHPT 635
+ +RPVR + L E+ ++GPFEQV+M + P+ + +H E PT
Sbjct: 620 GRSRMMRPVRYLPLDKED-----IVGPFEQVYMNVAVTPEEIENNIH-----SHVEFTPT 669
Query: 636 GMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRT 695
+LS++ANLTP+SD NQSPRNMYQCQM KQTMG AL R+D KLY LQT QTPIV+
Sbjct: 670 NILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGTALVHRSDNKLYRLQTGQTPIVKA 729
Query: 696 NTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDD 755
N Y YG+D +P G NAIVAV++YTGYDM+DAMI+NKS+ +RG +G +Y+TE +DLS
Sbjct: 730 NLYDDYGMDNFPNGMNAIVAVISYTGYDMDDAMIINKSADERGFGYGTVYKTEKVDLSQS 789
Query: 756 GNKVDRGQKLFRRNKDA--KSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSR 813
+ D + F D ++ +D+DGLP +G + G+P + YD T + +
Sbjct: 790 RRRGDPITQHFGFGTDEWPEAWKEKLDADGLPLIGVKVEEGDPIVAYYDDTLGKTKVKTY 849
Query: 814 KGSESVFVDYVAVDMKNSKNLP-QKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDID 872
SE +++ V + +S Q+ I++R TR P+IGDKFSSRHGQKGVCS+ WP ID
Sbjct: 850 HSSEPGYIEEVKLLGDDSNEQEGQQITIKYRITRQPLIGDKFSSRHGQKGVCSRKWPQID 909
Query: 873 MPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
MPF+ +GM+PD+IINPHAFPSRMTI M +ES+A K
Sbjct: 910 MPFT-ESGMQPDVIINPHAFPSRMTIGMFVESLAGK 944
>gi|302306565|ref|NP_982975.2| ABR029Wp [Ashbya gossypii ATCC 10895]
gi|442570011|sp|Q75DS1.2|RPA2_ASHGO RecName: Full=DNA-directed RNA polymerase I subunit RPA2; AltName:
Full=DNA-directed RNA polymerase I polypeptide 2;
Short=RNA polymerase I subunit 2
gi|299788577|gb|AAS50799.2| ABR029Wp [Ashbya gossypii ATCC 10895]
Length = 1196
Score = 719 bits (1857), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 395/880 (44%), Positives = 553/880 (62%), Gaps = 45/880 (5%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
R+ +Y GKL+ + + D G E + G PVML++ RCHL Q+LV K
Sbjct: 120 ARKRLTTYRGKLLLKLNWSVND-GEETFSEVRDCGPLPVMLQSNRCHLHKMSPQELVEHK 178
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
EE+ E+GGYFI+NG+E++ R +I+ ++N+PM+++R SF +R Y+ V IRCVR DQ+
Sbjct: 179 EESDELGGYFIVNGIEKLIRMLIVQRRNHPMAIIRPSFANRGTSYSHYGVQIRCVRPDQT 238
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
S T L+YL +G V F + EYL+PV ++LKAL D +D EIF+ +
Sbjct: 239 SQTNVLHYLNDGQVTFRFSWRKNEYLVPVVLILKALTDASDREIFDGIV----------- 287
Query: 218 GA-VGSPLVSERVKIILAEVQDL--SLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETV 274
GA + +++R++++L + L R Q LQ++G+ F+ V+ S Y V + +
Sbjct: 288 GADTSNSFLTDRLELLLRGFKKRFPQLLNRRQVLQYLGDKFRVVLQASPDMSDYLVGQEL 347
Query: 275 IRDYIFVHLND-NNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLK 333
+R + VHL D N DK N+L+FM++KL+SLV DNPD+ Q+QE+LL G L + +K
Sbjct: 348 LRRIVLVHLGDENTDKSNMLMFMIRKLYSLVAGECCPDNPDATQHQEVLLGGFLYGMIVK 407
Query: 334 EKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLAT 393
EK+E++L+ K IQ ++ N G DF + + +V+ + ++ IG+ ++ L TG L +
Sbjct: 408 EKIEEYLQNIKLQIQADV-NRGMPVDFKDRKYMTRVLTR-INENIGSKLQYFLSTGNLVS 465
Query: 394 QTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVH 453
Q+GLDLQQ +GYTV AE++NF RFIS FR VHRG+ FA L+TT+VRKLLPESWGFLCPVH
Sbjct: 466 QSGLDLQQVSGYTVVAEKINFYRFISHFRMVHRGSFFAQLKTTTVRKLLPESWGFLCPVH 525
Query: 454 TPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGP 513
TPDG PCGLLNH C++++ D SK+ T +L +G+ P+ V +
Sbjct: 526 TPDGSPCGLLNHFAHKCKIST------TQSDVSKIPT----LLYSLGVSPA--AHVTAAG 573
Query: 514 PAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAAS-VIPDDLEVGYVPLSLGGAYPGL 572
P++ V LDG++VG + V LR KV + +P DLE+GYVP S G YPGL
Sbjct: 574 PSLCCVQLDGKIVGWCSHEQGRIVADTLRYWKVEGKTDGLPLDLEIGYVPASKRGQYPGL 633
Query: 573 YLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEI 632
YLF + +RPVR + L ++ ++GPFEQV+M+I + + N TH E
Sbjct: 634 YLFGGHSRMMRPVRYLPLDKQD-----IVGPFEQVYMDIAVTP--EEIQNNVH--THVEF 684
Query: 633 HPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPI 692
PT +LS++ANLTP+SD NQSPRNMYQCQM KQTMG AL R+D KLY LQ+ QTPI
Sbjct: 685 SPTNILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGVALCHRSDNKLYRLQSGQTPI 744
Query: 693 VRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDL 752
V+ N Y YG+D +P GTNA+VAV++YTGYDM+DAMI+NKS+ +RG +G +Y+TE IDL
Sbjct: 745 VKANLYDDYGMDNFPNGTNAVVAVISYTGYDMDDAMIINKSADERGFSYGTVYKTEKIDL 804
Query: 753 SDDGNKVDRGQKLFRRNKDA--KSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRT 810
S + D + F D K +D DGLP +G + G+P C+ +D T N +
Sbjct: 805 SLSRGRGDPVTQHFGFGTDEWPKEWLEKLDEDGLPIIGSYVEEGDPICAYFDDTLNKTKI 864
Query: 811 NSRKGSESVFVDYVAV--DMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLW 868
+ SE +++ V + D N Q I++R R P IGDKFSSRHGQKGVCS+ W
Sbjct: 865 KTYHSSEPAYIEEVTLIGDESNKFQELQYITIKYRIRRVPQIGDKFSSRHGQKGVCSRKW 924
Query: 869 PDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
P +DMPFS TG++PD+IINPHAFPSRMTI M +ES+A K
Sbjct: 925 PTVDMPFSE-TGIQPDVIINPHAFPSRMTIGMFVESLAGK 963
>gi|374106178|gb|AEY95088.1| FABR029Wp [Ashbya gossypii FDAG1]
Length = 1196
Score = 719 bits (1856), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 395/880 (44%), Positives = 553/880 (62%), Gaps = 45/880 (5%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
R+ +Y GKL+ + + D G E + G PVML++ RCHL Q+LV K
Sbjct: 120 ARKRLTTYRGKLLLKLNWSVND-GEETFSEVRDCGPLPVMLQSNRCHLHKMSPQELVEHK 178
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
EE+ E+GGYFI+NG+E++ R +I+ ++N+PM+++R SF +R Y+ V IRCVR DQ+
Sbjct: 179 EESDELGGYFIVNGIEKLIRMLIVQRRNHPMAIIRPSFANRGTSYSHYGVQIRCVRPDQT 238
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
S T L+YL +G V F + EYL+PV ++LKAL D +D EIF+ +
Sbjct: 239 SQTNVLHYLNDGQVTFRFSWRKNEYLVPVVLILKALTDASDREIFDGIV----------- 287
Query: 218 GA-VGSPLVSERVKIILAEVQDL--SLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETV 274
GA + +++R++++L + L R Q LQ++G+ F+ V+ S Y V + +
Sbjct: 288 GADTSNSFLTDRLELLLRGFKKRFPQLLNRRQVLQYLGDKFRVVLQASPDMSDYLVGQEL 347
Query: 275 IRDYIFVHLND-NNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLK 333
+R + VHL D N DK N+L+FM++KL+SLV DNPD+ Q+QE+LL G L + +K
Sbjct: 348 LRRIVLVHLGDENTDKSNMLMFMIRKLYSLVAGECCPDNPDATQHQEVLLGGFLYGMIVK 407
Query: 334 EKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLAT 393
EK+E++L+ K IQ ++ N G DF + + +V+ + ++ IG+ ++ L TG L +
Sbjct: 408 EKIEEYLQNIKLQIQADV-NRGMPVDFKDRKYMTRVLTR-INENIGSKLQYFLSTGNLVS 465
Query: 394 QTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVH 453
Q+GLDLQQ +GYTV AE++NF RFIS FR VHRG+ FA L+TT+VRKLLPESWGFLCPVH
Sbjct: 466 QSGLDLQQVSGYTVVAEKINFYRFISHFRMVHRGSFFAQLKTTTVRKLLPESWGFLCPVH 525
Query: 454 TPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGP 513
TPDG PCGLLNH C++++ D SK+ T +L +G+ P+ V +
Sbjct: 526 TPDGSPCGLLNHFAHKCKIST------TQSDVSKIPT----LLYSLGVSPA--AHVTAAG 573
Query: 514 PAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAAS-VIPDDLEVGYVPLSLGGAYPGL 572
P++ V LDG++VG + V LR KV + +P DLE+GYVP S G YPGL
Sbjct: 574 PSLCCVQLDGKIVGWCSHEQGRIVADTLRYWKVEGKTDGLPLDLEIGYVPASKRGQYPGL 633
Query: 573 YLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEI 632
YLF + +RPVR + L ++ ++GPFEQV+M+I + + N TH E
Sbjct: 634 YLFGGHSRMMRPVRYLPLDKQD-----IVGPFEQVYMDIAVTP--EEIQNNVH--THVEF 684
Query: 633 HPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPI 692
PT +LS++ANLTP+SD NQSPRNMYQCQM KQTMG AL R+D KLY LQ+ QTPI
Sbjct: 685 SPTNILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGVALCHRSDNKLYRLQSGQTPI 744
Query: 693 VRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDL 752
V+ N Y YG+D +P GTNA+VAV++YTGYDM+DAMI+NKS+ +RG +G +Y+TE IDL
Sbjct: 745 VKANLYDDYGMDNFPNGTNAVVAVISYTGYDMDDAMIINKSADERGFSYGTVYKTEKIDL 804
Query: 753 SDDGNKVDRGQKLFRRNKDA--KSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRT 810
S + D + F D K +D DGLP +G + G+P C+ +D T N +
Sbjct: 805 SLSRGRGDPVTQHFGFGTDEWPKEWLEKLDEDGLPIIGSYVEEGDPICAYFDDTLNKTKI 864
Query: 811 NSRKGSESVFVDYVAV--DMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLW 868
+ SE +++ V + D N Q I++R R P IGDKFSSRHGQKGVCS+ W
Sbjct: 865 KTYHSSEPAYIEEVTLIGDESNKFQELQYITIKYRIRRVPQIGDKFSSRHGQKGVCSRKW 924
Query: 869 PDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
P +DMPFS TG++PD+IINPHAFPSRMTI M +ES+A K
Sbjct: 925 PTVDMPFSE-TGIQPDVIINPHAFPSRMTIGMFVESLAGK 963
>gi|159124281|gb|EDP49399.1| DNA-directed RNA polymerase I subunit beta (Rpa2), putative
[Aspergillus fumigatus A1163]
Length = 1235
Score = 719 bits (1855), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 402/903 (44%), Positives = 560/903 (62%), Gaps = 68/903 (7%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPV--VRERFNFGQFPVMLKTRRCHLQGADSQKLVS 95
R+ +Y GKL A +E+Q ++ G + +RE GQ P+ML+T RCHL+ A Q+LV
Sbjct: 128 ARERHATYRGKLRARLEYQ-VNNGDWMESIRE---LGQVPIMLRTNRCHLEKATPQELVQ 183
Query: 96 LKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKD 155
KEE+ E+GGYFI+NG E++ R +++ K+N+PM++VRSSF R YT + IR VR D
Sbjct: 184 HKEESEELGGYFIVNGNEKLIRMLVVGKRNFPMAIVRSSFVRRGHTYTKFGIQIRSVRPD 243
Query: 156 QSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKK 215
Q+S T L+YL +G+V F + EYL+PV +++KALV+TND EIF + K
Sbjct: 244 QTSQTNVLHYLSDGNVTFRFSWRKNEYLIPVMMIMKALVETNDREIFEGIVGSATSK--- 300
Query: 216 EKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVI 275
V + V++RV+++L + +L TR C ++GE F+PV+ S +
Sbjct: 301 ---GVNNTFVTDRVELLLRTYKAYNLHTRSSCRAYLGEKFKPVLGVPADMSNEDAGTEFL 357
Query: 276 RDYIFVHLNDNN-------DKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLI 328
R + HL + N DKF L++FM++KL++LV DNPD++ NQEILL G L
Sbjct: 358 RKIVLPHLGNQNVTEIQDYDKFKLIMFMIRKLYALVAGDCAPDNPDAVSNQEILLGGFLY 417
Query: 329 TIYLKEKLEDWLRKGKKLIQD-EIENNGKKFD--FFNLANIKKVMEKNPSKQIGTSIETM 385
+ LKE+LE+W+R +++D N G KF F + K++++ ++ IG +E
Sbjct: 418 GMILKEQLEEWMRSFGPILRDWSNRNGGAKFTDPAFERDFLSKIVKRT-NENIGGKLEYF 476
Query: 386 LKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPES 445
L TG L + TGLDLQQ +GYTV AE++NF RFIS FR +HRG+ FA L+TT+VRKLLPES
Sbjct: 477 LSTGNLVSPTGLDLQQVSGYTVMAEKINFYRFISHFRMIHRGSFFAQLKTTTVRKLLPES 536
Query: 446 WGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSL 505
WGFLCPVHTPDG PCGLLNH+ C +A+ S N+ K L V +GV S+
Sbjct: 537 WGFLCPVHTPDGAPCGLLNHLAHKCLIAT---SDVNVSHLPK-----LLVQLGVRSESSV 588
Query: 506 PKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSL 565
L S ++V LDGR+VG + + +R KVS IP +LE+GYVP S
Sbjct: 589 -ALEDS-----VTVQLDGRIVGYCSPKQARMIADTVRHWKVSGTHNIPRELEIGYVPNSN 642
Query: 566 GGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRNA 624
GG YPG+Y+F+ + RPV+ + L ++ +GPFEQ FMEI C PD G
Sbjct: 643 GGQYPGIYMFSQAARMYRPVKYLPL-----DKLDYVGPFEQPFMEIACLPDDLVAG---- 693
Query: 625 FPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYH 684
+TH E PT +LS+VAN+TP+SD+NQSPRNMYQCQM+KQTMG A+++R D KLY
Sbjct: 694 -VSTHIEYTPTNILSIVANMTPFSDYNQSPRNMYQCQMSKQTMGTPGTAIEYRTDNKLYR 752
Query: 685 LQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQI 744
LQT QTPIVR Y YG+D +P GTNA+VA+++YTGYDM+DAMI+NKSS +RG +G I
Sbjct: 753 LQTGQTPIVRPPLYNAYGLDNFPNGTNAVVAIISYTGYDMDDAMIINKSSHERGFGYGTI 812
Query: 745 YQTETIDLSDDGNKVDRGQ----KLFRRNKDAK---SLHSVIDSDGLPYVGQMIHPGEPY 797
Y+T+ L D ++ + + KLF + + +D DGLP+VG + G
Sbjct: 813 YKTKIHSLDDKDSRRSKSRREITKLFGFAPGGEIRAEWRTTLDEDGLPHVGARVKEGSLI 872
Query: 798 CSI----YDKTTNSW-------RTNSRKGSESVFVDYVAVDMKNSKNLP-QKANIRFRHT 845
+ YD ++S+ K +E ++D + + + P Q ++++R
Sbjct: 873 AAWHTVRYDAASDSYVNVDGITHFVKYKDAEEGYIDSIRIMGAETGLEPCQALSVKYRIP 932
Query: 846 RNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESV 905
R P+IGDKFSSRHGQKGVCSQLWP +DMPFS +G++PDLIINPHAFPSRMTIA ++ES+
Sbjct: 933 RKPVIGDKFSSRHGQKGVCSQLWPAVDMPFS-ESGIQPDLIINPHAFPSRMTIAQMIESM 991
Query: 906 AAK 908
A K
Sbjct: 992 AGK 994
>gi|119469451|ref|XP_001257945.1| DNA-directed RNA polymerase I subunit beta (Rpa2), putative
[Neosartorya fischeri NRRL 181]
gi|119406097|gb|EAW16048.1| DNA-directed RNA polymerase I subunit beta (Rpa2), putative
[Neosartorya fischeri NRRL 181]
Length = 1232
Score = 718 bits (1853), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 401/903 (44%), Positives = 558/903 (61%), Gaps = 68/903 (7%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPV--VRERFNFGQFPVMLKTRRCHLQGADSQKLVS 95
R+ +Y GKL A +E+Q ++ G + +RE GQ P+ML+T RCHL+ A Q+LV
Sbjct: 128 ARERHATYRGKLRARLEYQ-VNNGDWMESIRE---LGQVPIMLRTNRCHLEKATPQELVQ 183
Query: 96 LKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKD 155
KEE+ E+GGYFI+NG E++ R +++ K+NYPM++VR SF R YT + IR VR D
Sbjct: 184 HKEESEELGGYFIVNGNEKLIRMLVVGKRNYPMAIVRGSFVRRGHTYTKFGIQIRSVRPD 243
Query: 156 QSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKK 215
Q+S T L+YL +G+V F + EYL+PV +++K LV+TND EIF + K
Sbjct: 244 QTSQTNVLHYLSDGNVTFRFSWRKNEYLIPVMMIMKGLVETNDREIFEGIVGSATSK--- 300
Query: 216 EKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVI 275
V + V++RV+++L + +L TR C ++GE F+PV+ S +
Sbjct: 301 ---GVNNTFVTDRVELLLRTYKAYNLHTRSSCRAYLGEKFKPVLGVPADMSNEDAGTEFL 357
Query: 276 RDYIFVHLNDNN-------DKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLI 328
R + HL + N DKF L++FM++KL++LV DNPD++ NQEILL G L
Sbjct: 358 RKIVLPHLGNQNVTETQDYDKFKLIMFMIRKLYALVAGDCAPDNPDAVSNQEILLGGFLY 417
Query: 329 TIYLKEKLEDWLRKGKKLIQD-EIENNGKKFD--FFNLANIKKVMEKNPSKQIGTSIETM 385
+ LKE+LE+W+R +++D N G KF F + K++++ ++ IG +E
Sbjct: 418 GMILKEQLEEWMRSFGPILRDWSNRNGGAKFTDPAFERDFLSKIVKRT-NENIGGKLEYF 476
Query: 386 LKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPES 445
L TG L + TGLDLQQ +GYTV AE++NF RFIS FR +HRG+ FA L+TT+VRKLLPES
Sbjct: 477 LSTGNLVSPTGLDLQQVSGYTVMAEKINFYRFISHFRMIHRGSFFAQLKTTTVRKLLPES 536
Query: 446 WGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSL 505
WGFLCPVHTPDG PCGLLNH+ C +A+ S N+ K L V +GV S+
Sbjct: 537 WGFLCPVHTPDGAPCGLLNHLAHKCLIAT---SDVNVSHLPK-----LLVQLGVRSESSV 588
Query: 506 PKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSL 565
L S ++V LDGR+VG + + +R KVS IP +LE+GYVP S
Sbjct: 589 -ALEDS-----VTVQLDGRIVGYCSPKQARMIADTVRHWKVSGTHNIPRELEIGYVPNSN 642
Query: 566 GGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRNA 624
GG YPG+Y+F+ + RPV+ + L ++ +GPFEQ FMEI C PD G
Sbjct: 643 GGQYPGVYMFSQAARMYRPVKYLPL-----DKLDYVGPFEQPFMEIACLPDDLVAG---- 693
Query: 625 FPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYH 684
+TH E PT +LS+VAN+TP+SD+NQSPRNMYQCQM+KQTMG A+++R D KLY
Sbjct: 694 -VSTHIEFTPTNILSIVANMTPFSDYNQSPRNMYQCQMSKQTMGTPGTAIEYRTDNKLYR 752
Query: 685 LQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQI 744
LQT QTPIVR Y YG+D +P GTNA+VA+++YTGYDM+DAMI+NKSS +RG +G I
Sbjct: 753 LQTGQTPIVRPPLYNAYGLDNFPNGTNAVVAIISYTGYDMDDAMIINKSSHERGFGYGTI 812
Query: 745 YQTETIDLSDDGNKVDRGQ----KLFRRNKDAK---SLHSVIDSDGLPYVGQMIHPGEPY 797
Y+T+ L D ++ + + KLF + + +D DGLP+VG + G
Sbjct: 813 YKTKIHSLDDKDSRRSKSRREITKLFGFAPGGEIRAEWRTTLDEDGLPHVGARVKEGSLI 872
Query: 798 CSI----YDKTTNSW-------RTNSRKGSESVFVDYVAVDMKNSKNLP-QKANIRFRHT 845
+ YD ++S+ K +E ++D + + + P Q ++++R
Sbjct: 873 AAWHTVRYDAASDSYVNVDGITHFVKYKDAEEGYIDSIRIMGAETGLEPCQALSVKYRIP 932
Query: 846 RNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESV 905
R P+IGDKFSSRHGQKGVCSQLWP +DMPFS +G++PDLIINPHAFPSRMTIA ++ES+
Sbjct: 933 RKPVIGDKFSSRHGQKGVCSQLWPAVDMPFS-ESGIQPDLIINPHAFPSRMTIAQMIESM 991
Query: 906 AAK 908
A K
Sbjct: 992 AGK 994
>gi|238883229|gb|EEQ46867.1| DNA-directed RNA polymerase I 135 kDa polypeptide [Candida albicans
WO-1]
Length = 1166
Score = 718 bits (1853), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 383/875 (43%), Positives = 554/875 (63%), Gaps = 42/875 (4%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR+ ++Y +LM +V + D V E GQ P+MLK+ RCHL+ +LV K
Sbjct: 108 CRERMVTYRSRLMLNVTWSVNDGEE--VSEVREAGQIPIMLKSNRCHLEKLSPNQLVEAK 165
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
EE+ E+GGYFI+NG+E++ R +I+ ++N+PM+++R SF +R YT + IR VR DQ+
Sbjct: 166 EESDELGGYFIVNGIEKLIRMLIVQRRNHPMAIIRPSFGNRGASYTKFGIQIRSVRPDQT 225
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
S T L+YL +G+V F + E+L+PV ++LKAL++TND EIF+ + E
Sbjct: 226 SQTNVLHYLNDGNVTFRFSWRKNEFLVPVVMILKALIETNDREIFDGIVGNDTE------ 279
Query: 218 GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRD 277
+ +++R++++L + +L ++ + L ++G+ F+ V S V + V++
Sbjct: 280 ----NSFLTDRLELLLRTYKTYNLYSQQETLAYLGDKFRVVFGASPDMSDIEVGKEVLKR 335
Query: 278 YIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLE 337
+ VHL +N DKF +L+FM++KL+SLV DNPD+ Q+QE+LL G L + +KEK+E
Sbjct: 336 IVLVHLPNNADKFRMLLFMIRKLYSLVAGDCAPDNPDATQHQEVLLGGFLYGMIIKEKIE 395
Query: 338 DWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGL 397
++L+ K IQ +I N G +F + + +V + ++ IG ++ L TG L +Q+GL
Sbjct: 396 EYLQNIKLQIQSDI-NRGVGINFDDRKYMTRVFSR-INENIGQKLQYFLSTGNLVSQSGL 453
Query: 398 DLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDG 457
DLQQ +GYTV AE++NF RFIS FR VHRG+ FA L+TT+VRKLLPESWGFLCPVHTPDG
Sbjct: 454 DLQQVSGYTVVAEKINFYRFISHFRMVHRGSFFAELKTTTVRKLLPESWGFLCPVHTPDG 513
Query: 458 EPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVL 517
PCGLLNH++ C++A+ D S++ ++ + +GV LP + P +
Sbjct: 514 SPCGLLNHLSHKCKIAT------EASDVSQVPKALTQ--LGV-----LPADSFAAGPNLC 560
Query: 518 SVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTS 577
V LDG++VG + V LR KV+ +P DLE+GYVP S G YPGLY+F
Sbjct: 561 CVQLDGKIVGWTTHEQGRIVADTLRYWKVNGGHGLPLDLEIGYVPPSNKGQYPGLYIFGG 620
Query: 578 PPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRNAFPATHEEIHPTG 636
+ +RPV+ + L E+ ++GPFEQV+M + P+ + +H E PT
Sbjct: 621 HSRMMRPVKYLPLDKED-----IVGPFEQVYMNVAVTPEEIENNIH-----SHVEFTPTN 670
Query: 637 MLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTN 696
+LS++ANLTP+SD NQSPRNMYQCQM KQTMG AL R+D KLY LQT QTPIV+ N
Sbjct: 671 ILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGTALVHRSDNKLYRLQTGQTPIVKAN 730
Query: 697 TYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDG 756
Y YG+D +P G NAIVAV++YTGYDM+DAMI+NKS+ +RG +G +Y+TE +DLS
Sbjct: 731 LYDDYGMDNFPNGMNAIVAVISYTGYDMDDAMIINKSADERGFGYGTVYKTEKVDLSQSR 790
Query: 757 NKVDRGQKLFRRNKDA--KSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRK 814
+ D + F D ++ +D+DGLP +G + G+P + YD T + +
Sbjct: 791 RRGDPITQHFGFGSDEWPEAWKEKLDADGLPLIGVKVEEGDPIVAYYDDTLGKTKVKTYH 850
Query: 815 GSESVFVDYVAVDMKNSKNLP-QKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDM 873
SE +++ V + +S Q+ I++R TR P+IGDKFSSRHGQKGVCS+ WP IDM
Sbjct: 851 SSEPAYIEEVKLLGDDSNEQEGQQITIKYRITRQPLIGDKFSSRHGQKGVCSRKWPQIDM 910
Query: 874 PFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
PF+ +GM+PD+IINPHAFPSRMTI M +ES+A K
Sbjct: 911 PFT-ESGMQPDVIINPHAFPSRMTIGMFVESLAGK 944
>gi|68471155|ref|XP_720354.1| hypothetical protein CaO19.7062 [Candida albicans SC5314]
gi|77022490|ref|XP_888689.1| hypothetical protein CaO19_7062 [Candida albicans SC5314]
gi|46442218|gb|EAL01509.1| hypothetical protein CaO19.7062 [Candida albicans SC5314]
gi|76573502|dbj|BAE44586.1| hypothetical protein [Candida albicans]
Length = 1166
Score = 718 bits (1853), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 383/875 (43%), Positives = 554/875 (63%), Gaps = 42/875 (4%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR+ ++Y +LM +V + D V E GQ P+MLK+ RCHL+ +LV K
Sbjct: 108 CRERMVTYRSRLMLNVTWSVNDEEE--VSEVREAGQIPIMLKSNRCHLEKLSPNQLVEAK 165
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
EE+ E+GGYFI+NG+E++ R +I+ ++N+PM+++R SF +R YT + IR VR DQ+
Sbjct: 166 EESDELGGYFIVNGIEKLIRMLIVQRRNHPMAIIRPSFGNRGASYTKFGIQIRSVRPDQT 225
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
S T L+YL +G+V F + E+L+PV ++LKAL++TND EIF+ + E
Sbjct: 226 SQTNVLHYLNDGNVTFRFSWRKNEFLVPVVMILKALIETNDREIFDGIVGNDTE------ 279
Query: 218 GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRD 277
+ +++R++++L + +L ++ + L ++G+ F+ V S V + V++
Sbjct: 280 ----NSFLTDRLELLLRTYKTYNLYSQQETLAYLGDKFRVVFGASPDMSDIEVGKEVLKR 335
Query: 278 YIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLE 337
+ VHL +N DKF +L+FM++KL+SLV DNPD+ Q+QE+LL G L + +KEK+E
Sbjct: 336 IVLVHLPNNADKFRMLLFMIRKLYSLVAGDCAPDNPDATQHQEVLLGGFLYGMIIKEKIE 395
Query: 338 DWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGL 397
++L+ K IQ +I N G +F + + +V + ++ IG ++ L TG L +Q+GL
Sbjct: 396 EYLQNIKLQIQSDI-NRGVGINFDDRKYMTRVFSR-INENIGQKLQYFLSTGNLVSQSGL 453
Query: 398 DLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDG 457
DLQQ +GYTV AE++NF RFIS FR VHRG+ FA L+TT+VRKLLPESWGFLCPVHTPDG
Sbjct: 454 DLQQVSGYTVVAEKINFYRFISHFRMVHRGSFFAELKTTTVRKLLPESWGFLCPVHTPDG 513
Query: 458 EPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVL 517
PCGLLNH++ C++A+ D S++ ++ + +GV LP + P +
Sbjct: 514 SPCGLLNHLSHKCKIAT------EASDVSQVPKALTQ--LGV-----LPADSFAAGPNLC 560
Query: 518 SVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTS 577
V LDG++VG + V LR KV+ +P DLE+GYVP S G YPGLY+F
Sbjct: 561 CVQLDGKIVGWTTHEQGRIVADTLRYWKVNGGHGLPLDLEIGYVPPSNKGQYPGLYIFGG 620
Query: 578 PPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRNAFPATHEEIHPTG 636
+ +RPV+ + L E+ ++GPFEQV+M + P+ + +H E PT
Sbjct: 621 HSRMMRPVKYLPLDKED-----IVGPFEQVYMNVAVTPEEIENNIH-----SHVEFTPTN 670
Query: 637 MLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTN 696
+LS++ANLTP+SD NQSPRNMYQCQM KQTMG AL R+D KLY LQT QTPIV+ N
Sbjct: 671 ILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGTALVHRSDNKLYRLQTGQTPIVKAN 730
Query: 697 TYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDG 756
Y YG+D +P G NAIVAV++YTGYDM+DAMI+NKS+ +RG +G +Y+TE +DLS
Sbjct: 731 LYDDYGMDNFPNGMNAIVAVISYTGYDMDDAMIINKSADERGFGYGTVYKTEKVDLSQSR 790
Query: 757 NKVDRGQKLFRRNKDA--KSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRK 814
+ D + F D ++ +D+DGLP +G + G+P + YD T + +
Sbjct: 791 RRGDPITQHFGFGSDEWPEAWKEKLDADGLPLIGVKVEEGDPIVAYYDDTLGKTKVKTYH 850
Query: 815 GSESVFVDYVAVDMKNSKNLP-QKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDM 873
SE +++ V + +S Q+ I++R TR P+IGDKFSSRHGQKGVCS+ WP IDM
Sbjct: 851 SSEPAYIEEVKLLGDDSNEQEGQQITIKYRITRQPLIGDKFSSRHGQKGVCSRKWPQIDM 910
Query: 874 PFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
PF+ +GM+PD+IINPHAFPSRMTI M +ES+A K
Sbjct: 911 PFT-ESGMQPDVIINPHAFPSRMTIGMFVESLAGK 944
>gi|150865654|ref|XP_001384965.2| DNA-directed RNA polymerase I [Scheffersomyces stipitis CBS 6054]
gi|149386910|gb|ABN66936.2| DNA-directed RNA polymerase I [Scheffersomyces stipitis CBS 6054]
Length = 1167
Score = 717 bits (1852), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/878 (43%), Positives = 549/878 (62%), Gaps = 48/878 (5%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR+ +Y +LM V + D V E GQ P+MLKT RCHL+ Q+LV +
Sbjct: 106 CRERMSTYRSRLMLKVAWSVNDGDE--VSEIREAGQVPIMLKTNRCHLEKLSPQELVEQR 163
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
EE+ E+GGYFI+NG+E++ R +I+ ++N+PM+++R SF +R YT + IR VR DQ+
Sbjct: 164 EESDELGGYFIVNGIEKLIRMLIVQRRNHPMAIIRPSFGNRGAAYTKFGIQIRSVRPDQT 223
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
S T L+YL +G+V F + EYL+PV ++LKAL++TND EIF+
Sbjct: 224 SQTNVLHYLNDGNVTFRFSWRKNEYLVPVMMILKALIETNDREIFD-------------- 269
Query: 218 GAVGS----PLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAET 273
G VG+ +++R++++L + +L ++ + L ++G+ F+ V S V +
Sbjct: 270 GIVGADSANSFLTDRLELLLRTYKQYNLYSKQETLAYLGDKFRVVFGATPDVSDIEVGKE 329
Query: 274 VIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLK 333
V+R + VHL DN DKF +L+FM++KL+SLV DNPD+ Q+QE+LL G L + +K
Sbjct: 330 VLRRIVLVHLPDNADKFRMLLFMIRKLYSLVAGDCSPDNPDATQHQEVLLGGFLYGMIIK 389
Query: 334 EKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLAT 393
EK+E++L+ IQ +I N G +F + + +V + ++ IG ++ L TG L +
Sbjct: 390 EKIEEYLQNINLQIQSDI-NRGVAINFNDRKYMSRVFMR-INENIGQKLQYFLSTGNLVS 447
Query: 394 QTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVH 453
Q+GLDLQQ +GYTV AE++NF RFIS FR VHRG+ FA L+TT+VRKLLPESWGFLCPVH
Sbjct: 448 QSGLDLQQVSGYTVVAEKINFYRFISHFRMVHRGSFFAELKTTTVRKLLPESWGFLCPVH 507
Query: 454 TPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGP 513
TPDG PCGLLNH+ CR+A+ D S++ ++ + +GV P +
Sbjct: 508 TPDGSPCGLLNHLAHKCRIAT------EASDVSQVPKTLAQ--LGVS-----PAHTFAAG 554
Query: 514 PAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLY 573
P + V LDG++VG + + V LR KV +P DLE+GYVP S G YPGLY
Sbjct: 555 PNLCCVQLDGKIVGWTTHEQGKIVADTLRFWKVEGGHGLPLDLEIGYVPPSAKGQYPGLY 614
Query: 574 LFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIH 633
+F + +RP + + L + ++GPFEQV+M + G + TH E
Sbjct: 615 IFGGHSRMMRPAKYLPLDKPD-----VLGPFEQVYMNVAVTPAEIEGNVH----THVEFS 665
Query: 634 PTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIV 693
PT +LS++ANLTP+SD NQSPRNMYQCQM KQTMG AL R+D KLY LQT QTPIV
Sbjct: 666 PTNILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGVALMHRSDNKLYRLQTGQTPIV 725
Query: 694 RTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLS 753
+ N Y YG+D +P G NA+VAV++YTGYDM+DAMI+NKS+ +RG +G +Y+ E +DLS
Sbjct: 726 KANLYDDYGMDNFPNGMNAVVAVISYTGYDMDDAMIINKSADERGFGYGTVYKVEKVDLS 785
Query: 754 DDGNKVDRGQKLFRRNKDA--KSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTN 811
+ D + F D ++ +D+DGLP +G + G+P + +D+T+ +
Sbjct: 786 QSRRRGDPITQHFGFGDDEWPETWREKLDADGLPLIGVKVEEGDPIVAFFDETSGKTKVK 845
Query: 812 SRKGSESVFVDYVAVDMKNSKNLP-QKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPD 870
+ SE +++ V + +S + Q+ I++R TR P IGDKFSSRHGQKGVCS+ WP
Sbjct: 846 TYHSSEPAYIEEVKLLGDDSGDQEGQQITIKYRITRQPNIGDKFSSRHGQKGVCSRKWPQ 905
Query: 871 IDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
IDMPFS TG++PD+IINPHAFPSRMTI M +ES+A K
Sbjct: 906 IDMPFS-ETGIQPDVIINPHAFPSRMTIGMFVESLAGK 942
>gi|443895297|dbj|GAC72643.1| RNA polymerase I, second largest subunit [Pseudozyma antarctica T-34]
Length = 1282
Score = 717 bits (1852), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/887 (43%), Positives = 552/887 (62%), Gaps = 49/887 (5%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
R+ +YTGKL A + + G P E G PV++++ RC+L+G S++LV+
Sbjct: 175 ARERLFTYTGKLTARLCWSV--NGDPEQSEIVALGNCPVLVRSNRCNLRGMSSRELVAHH 232
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCV-RKDQ 156
EEA E GGY+++NG ER+ R +I+ K N P ++ R SF R Y++KA+VIRC+ R D
Sbjct: 233 EEANEFGGYYLVNGNERLIRYLIVAKANSPQAIERPSFEKRGPSYSNKAIVIRCLHRDDL 292
Query: 157 SSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKE 216
SVT ++YL NG + L F + +EY++PV +VLKALVD D EIF +
Sbjct: 293 ISVTNAVHYLHNGGLTLRFSWRKQEYMVPVVMVLKALVDATDKEIFASIV---------- 342
Query: 217 KGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIR 276
+G + +++RV+++L + +L + QCL+++G F+ V+ + + V +I
Sbjct: 343 QGDFDNTFLTDRVELLLRNFKQYTLWSGHQCLEYLGSKFRVVLGCPEDWTDAQVGSELIH 402
Query: 277 DYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKL 336
VHL+ +K+ +LIFM+QKL+SLV S +DN DS Q+ EIL+PG L+ +KE++
Sbjct: 403 RIFLVHLDSPREKYKMLIFMIQKLYSLVAGESCADNADSPQHHEILMPGFLVGQIVKERI 462
Query: 337 EDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTG 396
++ + + I ++ K DF++ IKK + K + IG I + L TG L++ +G
Sbjct: 463 DEAVGNIRAQIARDVRMKLKGVDFYDARYIKKSVAK-VNIDIGVKIASFLATGNLSSPSG 521
Query: 397 LDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPD 456
LDLQQ +G+T+ AE+LNF R+++ FR+VHRGA FA L+TTSVRKLLPE+WGFLCPVHTPD
Sbjct: 522 LDLQQTSGFTIMAEKLNFARYLAHFRSVHRGAFFAELKTTSVRKLLPEAWGFLCPVHTPD 581
Query: 457 GEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAV 516
G PCGLLNH + TCR+ + D S + +L +GM + +
Sbjct: 582 GSPCGLLNHFSHTCRMTTRQP------DVSHLHA----LLTSLGMTEAAFSVGGGSAHGA 631
Query: 517 ----LSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGL 572
+ V LDG ++G + + + LR K +P DLE+G+VP S G YPGL
Sbjct: 632 NKNNIVVQLDGAILGYTTPALAKHIATALRIWKTEGLHNVPLDLEIGFVPTSKSGQYPGL 691
Query: 573 YLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEI 632
YLF++ + +RPVR + + I+L+GP+EQV+++I C D ++H E+
Sbjct: 692 YLFSNRSRMIRPVRLL-----HNNKIDLVGPYEQVYLDIAC----DPSEIIQGVSSHVEL 742
Query: 633 HPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPI 692
PT +LSV+ANLTP+SD+NQSPRN+YQ QM KQTMG + A+ R D KLY +Q+PQTP+
Sbjct: 743 APTSILSVLANLTPFSDYNQSPRNVYQTQMMKQTMGTASTAISRRTDNKLYRIQSPQTPV 802
Query: 693 VRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDL 752
VR Y KYG D+YP GTNAIVAV++YTGYDMEDAMILNKS+ +RG +G +Y++ET+DL
Sbjct: 803 VRPELYNKYGFDDYPNGTNAIVAVISYTGYDMEDAMILNKSAHERGFGYGTVYKSETVDL 862
Query: 753 SDDGNKVDRGQKL-----FRRN-KDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTN 806
D K F N + +++ +++D DGLPY+GQ + GEP C+ +D+ +
Sbjct: 863 RDLRGKAASASVPTLHFGFAPNYRASEAQRAILDQDGLPYIGQKVMAGEPICAYWDEVSG 922
Query: 807 SWRTNSRKGSESVFVDYVAVDMKNSKNLP-----QKANIRFRHTRNPIIGDKFSSRHGQK 861
KG E +VD V + + + QK I R TR+P+IGDKFSSRHGQK
Sbjct: 923 KTSFKKFKGDEYAYVDTVRLLGADGGSGGGDSECQKVQIMLRITRSPVIGDKFSSRHGQK 982
Query: 862 GVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
GVCSQ WP +DMPFS +GM+PD+IINPHAFPSRMTI ML+ES+A K
Sbjct: 983 GVCSQKWPAVDMPFS-ESGMQPDVIINPHAFPSRMTIGMLIESIAGK 1028
>gi|67526951|ref|XP_661537.1| hypothetical protein AN3933.2 [Aspergillus nidulans FGSC A4]
gi|40740052|gb|EAA59242.1| hypothetical protein AN3933.2 [Aspergillus nidulans FGSC A4]
gi|259481492|tpe|CBF75062.1| TPA: DNA-directed RNA polymerase I subunit beta (Rpa2), putative
(AFU_orthologue; AFUA_6G08300) [Aspergillus nidulans
FGSC A4]
Length = 1231
Score = 717 bits (1852), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 397/903 (43%), Positives = 570/903 (63%), Gaps = 68/903 (7%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAG-SPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
CR+ +Y GKL A +E++ + + VRE GQ P+ML+T RC+L+ A +LV
Sbjct: 128 CRERHATYRGKLRAKIEYRVNNGDWTEQVRE---LGQVPIMLRTNRCYLEKATPAELVQH 184
Query: 97 KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQ 156
KEE+ E+GGYFI+NG E++ R +I+ ++NYPM++VR++F +R Y+ + IR VR DQ
Sbjct: 185 KEESEELGGYFIVNGNEKLIRMLIVGRRNYPMAIVRNTFTNRGHAYSKFGIQIRSVRPDQ 244
Query: 157 SSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKE 216
+S T L+YL +G+V F + EY++PV ++LKALV+TND EIF + +
Sbjct: 245 TSQTNVLHYLNDGNVTFRFSWRKNEYIIPVVMILKALVETNDREIFEGIVGSASSE---- 300
Query: 217 KGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAET-VI 275
+ + V++RV+++L + L +R +C IGE F+PV+ G+ +++ A T +
Sbjct: 301 --GINNTFVTDRVELLLRTYKAYKLHSRSECRAFIGEKFKPVL-GVPADTPNEEAGTEFL 357
Query: 276 RDYIFVHLNDNN-------DKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLI 328
R + HL + N DKF +L+FM++KL++LV DNPD++ NQEILL G L
Sbjct: 358 RKVVLPHLGNQNVTETQDYDKFKMLMFMIRKLYALVAGDCAPDNPDAVSNQEILLGGFLY 417
Query: 329 TIYLKEKLEDWLRKGKKLIQD-EIENNGKKFD--FFNLANIKKVMEKNPSKQIGTSIETM 385
+ LKE+L++W+R +++D N+G +F F + KV+ ++ ++ IG ++E
Sbjct: 418 GMLLKERLDEWVRSFGPILRDWSNRNHGARFTDPAFERDFVSKVIRRS-NENIGGAMEYF 476
Query: 386 LKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPES 445
L TG L + TGLDLQQ +GYTV AE++NF RFIS FR +HRG+ FA L+TT+VRKLLPES
Sbjct: 477 LSTGNLVSPTGLDLQQTSGYTVMAEKINFYRFISHFRMIHRGSFFAQLKTTTVRKLLPES 536
Query: 446 WGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSL 505
WGFLCPVHTPDG PCGLLNH+ C VA+ S ++ K L V +GV S+
Sbjct: 537 WGFLCPVHTPDGSPCGLLNHLAHKCLVAT---SDTDVSHLPK-----LLVQLGVRNESSV 588
Query: 506 PKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSL 565
L +S ++V LDGR++G + + + LR KVS + +P LE+GYVP S
Sbjct: 589 -SLDES-----VTVQLDGRIIGYCSPKQARVIASTLRHWKVSGTNNVPLGLEIGYVPNSN 642
Query: 566 GGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRNA 624
GG YPG+Y+F+ + RPV+ + L ++ +GPFEQ FMEI C P G
Sbjct: 643 GGQYPGIYMFSQAARMYRPVKYLPL-----DKLDYVGPFEQPFMEIACLPSDLVKGL--- 694
Query: 625 FPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYH 684
+TH E PT +LS+VAN+TP+SD+NQSPRNMYQCQM+KQTMG A+ +R D KLY
Sbjct: 695 --STHIEFTPTNILSIVANMTPFSDYNQSPRNMYQCQMSKQTMGTPGTAIDYRTDNKLYR 752
Query: 685 LQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQI 744
LQT QTPIVR Y YG+D +P GTNA+VA+++YTGYDM+DAMI+NKSS +RG +G +
Sbjct: 753 LQTGQTPIVRPPLYNAYGLDNFPNGTNAVVAIISYTGYDMDDAMIINKSSHERGFGYGTV 812
Query: 745 YQTETIDLSDDGNKVDRG----QKLFRRNKDAK---SLHSVIDSDGLPYVGQMIHPGE-- 795
Y+T+ L + ++ + QKLF ++ + +D DG P++G I G
Sbjct: 813 YKTKVHSLDEKDSRRTKSKQAVQKLFGFAPGSEIRAEWRATLDEDGFPHIGAEIKEGSIV 872
Query: 796 -PYCSI-YDKTTNSW-------RTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHT 845
Y ++ YD T++S+ K SE ++D + + + P +A ++++R
Sbjct: 873 AAYHTVRYDATSDSYINVDGITHFVKYKDSERAYIDSIRIMGSETGTEPAQAISVKYRIP 932
Query: 846 RNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESV 905
R PIIGDKFSSRHGQKGVCSQLWP +DMPFS +G++PDLIINPHAFPSRMTIA ++ES+
Sbjct: 933 RKPIIGDKFSSRHGQKGVCSQLWPAVDMPFS-ESGIQPDLIINPHAFPSRMTIAQMIESM 991
Query: 906 AAK 908
A K
Sbjct: 992 AGK 994
>gi|121699292|ref|XP_001267972.1| DNA-directed RNA polymerase I subunit beta (Rpa2), putative
[Aspergillus clavatus NRRL 1]
gi|119396114|gb|EAW06546.1| DNA-directed RNA polymerase I subunit beta (Rpa2), putative
[Aspergillus clavatus NRRL 1]
Length = 1234
Score = 715 bits (1846), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 395/903 (43%), Positives = 558/903 (61%), Gaps = 68/903 (7%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPV--VRERFNFGQFPVMLKTRRCHLQGADSQKLVS 95
R+ +Y GKL A +E+Q ++ G + +RE GQ P+ML+T RCHL+ A ++LV
Sbjct: 128 ARERHATYRGKLRARLEYQ-VNNGDWMESIRE---LGQVPIMLRTNRCHLEKATPEELVQ 183
Query: 96 LKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKD 155
KEE+ E+GGYFI+NG E++ R +++ K+N+PM++VR+SF R YT + IR VR D
Sbjct: 184 HKEESEELGGYFIVNGNEKLIRMLVVGKRNFPMAIVRNSFVRRGHTYTKYGIQIRSVRPD 243
Query: 156 QSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKK 215
Q+S T L+YL +G+V F + EYL+P ++LKALV+TND EIF + K
Sbjct: 244 QTSQTNVLHYLSDGNVTFRFSWRKSEYLVPAMMILKALVETNDREIFEGIVGSASSK--- 300
Query: 216 EKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVI 275
V + V++RV+++L + +L +R C ++GE F+PV+ S +
Sbjct: 301 ---GVSNTFVTDRVELLLRTYKGYNLHSRSSCRAYLGEKFKPVLGVPADMSNEDAGTEFL 357
Query: 276 RDYIFVHLNDNN-------DKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLI 328
R + HL + N DKF L++FM++KL++LV DNPD++ NQEILL G L
Sbjct: 358 RKVVLPHLGNQNVTGTQDYDKFKLVMFMIRKLYALVAGDCAPDNPDAVSNQEILLGGFLY 417
Query: 329 TIYLKEKLEDWLRKGKKLIQD-EIENNGKKFD--FFNLANIKKVMEKNPSKQIGTSIETM 385
+ LKE+LE+W+R +++D N+G KF F + +V+ + ++ IG ++E
Sbjct: 418 GMILKERLEEWVRSFGPILRDWSNRNSGAKFTDPAFERDFLSRVVRRT-NENIGGALEYF 476
Query: 386 LKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPES 445
L TG L + TGLDLQQ +GYTV AE++NF RFIS FR +HRG+ FA L+TT+VRKLLPES
Sbjct: 477 LSTGNLVSPTGLDLQQTSGYTVMAEKINFYRFISHFRMIHRGSFFAQLKTTTVRKLLPES 536
Query: 446 WGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSL 505
WGF CPVHTPDG PCGLLNH+ C +++ S N+ K L V +GV S+
Sbjct: 537 WGFFCPVHTPDGAPCGLLNHLAHKCFIST---SDVNVSQLPK-----LLVQLGVRSESSV 588
Query: 506 PKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSL 565
+V LDGR++G + ++ +R KV + IP +LE+GYVP S
Sbjct: 589 SLEESV------TVQLDGRIIGYCSPKQARQIADTVRHWKVQGTNNIPRELEIGYVPNSN 642
Query: 566 GGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRNA 624
GG YPG+Y+F+ + RPV+ + L ++ +GPFEQ FMEI C PD G
Sbjct: 643 GGQYPGVYMFSQAARMYRPVKYLPL-----DKLDYVGPFEQPFMEIACLPDDLVAG---- 693
Query: 625 FPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYH 684
+TH E PT +LS+VAN+TP+SD+NQSPRNMYQCQM+KQTMG A+++R D KLY
Sbjct: 694 -VSTHIEFTPTNILSIVANMTPFSDYNQSPRNMYQCQMSKQTMGTPGTAIQYRTDNKLYR 752
Query: 685 LQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQI 744
LQT QTPIVR Y YG+D +P GTNA+VA+++YTGYDM+DAMI+NKSS +RG HG I
Sbjct: 753 LQTGQTPIVRPPLYNAYGLDNFPNGTNAVVAIISYTGYDMDDAMIINKSSHERGFGHGTI 812
Query: 745 YQTETIDLSDDGNKVDRGQ----KLFRRNKDAK---SLHSVIDSDGLPYVGQMIHPGEPY 797
Y+T+ L D ++ + + KLF + + +D DGLP+VG + G
Sbjct: 813 YKTKIHSLDDKDSRRSKSRREITKLFGFAPGGEIRAEWRTTLDEDGLPHVGARVKEGSLV 872
Query: 798 CSI----YDKTTNSW-------RTNSRKGSESVFVDYVAVDMKNSKNLP-QKANIRFRHT 845
+ YD +++S+ K +E ++D + + + P Q ++++R
Sbjct: 873 AAWHTVRYDASSDSYVNVDGITHFVKYKDAEEGYIDSIRIMGAETGLEPCQALSVKYRVP 932
Query: 846 RNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESV 905
R PIIGDKFSSRHGQKGVCSQLWP +DMPFS +G++PDLIINPHAFPSRMTIA ++ES+
Sbjct: 933 RKPIIGDKFSSRHGQKGVCSQLWPAVDMPFS-ESGIQPDLIINPHAFPSRMTIAQMIESM 991
Query: 906 AAK 908
A K
Sbjct: 992 AGK 994
>gi|331233519|ref|XP_003329420.1| DNA-directed RNA polymerase I subunit A2 [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
gi|309308410|gb|EFP85001.1| DNA-directed RNA polymerase I subunit A2 [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
Length = 1224
Score = 715 bits (1846), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 390/882 (44%), Positives = 544/882 (61%), Gaps = 51/882 (5%)
Query: 39 RQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKE 98
R+ ++Y GK+ A V + L+ G P R +FG P+M+K+ +C+L+ KLVS E
Sbjct: 135 RERLVTYAGKISAKVTWS-LNNGPPQNEYR-DFGLLPIMVKSEKCNLKQMSPAKLVSHHE 192
Query: 99 EAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSS 158
E+ EMGGYF++NG E++ R +I+P++N+ +S++R SF +R YT A IRCVR DQ+S
Sbjct: 193 ESEEMGGYFVVNGNEKIIRCLIVPRRNHVISLIRPSFVNRGNFYTTYATQIRCVRPDQTS 252
Query: 159 VTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKG 218
T L+YL NG++ F + E+++PV ++LKAL+ +D EIF +L +
Sbjct: 253 QTNTLHYLSNGTITFRFSWRKSEFMVPVVMLLKALIGASDQEIFTNLA----------QN 302
Query: 219 AVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDY 278
A ++R++++L Q SL T CL +G F+ V+ + +++
Sbjct: 303 AFEDTFRTDRIELMLRNFQYYSLPTASACLDFLGSKFKVVLGCPDDWGSEQIGRYLLQRI 362
Query: 279 IFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLED 338
+ VHL D K+ LL+FM+QKL++LV +DNPDS Q+QEILLPGHL++ LKE+ E+
Sbjct: 363 VLVHLKDPISKYRLLLFMIQKLYALVAGECCADNPDSPQHQEILLPGHLLSSILKERFEE 422
Query: 339 WLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLD 398
+L + I E+ + F + + K + K S IG + L TG L + TGLD
Sbjct: 423 YLGGIQAQITSEVRKSTTGVTFSDNKFVTKAIGKVYS-DIGRRVTFFLATGNLVSPTGLD 481
Query: 399 LQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGE 458
LQQ +G+T+ AE+LNF R+IS FR VHRGA FA L+TT+VRKLLPE+WGFLCPVHTPDG
Sbjct: 482 LQQTSGFTIIAEKLNFYRYISHFRCVHRGAFFAELKTTTVRKLLPEAWGFLCPVHTPDGS 541
Query: 459 PCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLS 518
PCGLLNH C++ + S NI +L+ +GM S P P +S
Sbjct: 542 PCGLLNHFAHKCKILTSAPSVKNIPS----------LLLSLGM--SQPFDTTIHPSKFVS 589
Query: 519 VLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSP 578
V LDG ++G SS ++ LR K IP +LE+G VP S GG YPGL+LF++P
Sbjct: 590 VQLDGEIIGWASSSLCSRMATALRTWKTEGLENIPLELEIGLVPRSKGGQYPGLFLFSTP 649
Query: 579 PKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCP-DGGDGGRRNAFPATHEEIHPTGM 637
+ +RPV+ +S ++ +L+G FEQV+M+I C + D G +TH EI PT +
Sbjct: 650 ARMMRPVQLLS-----NKKTDLVGSFEQVYMDIACSQEEIDPGF-----STHVEISPTHV 699
Query: 638 LSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNT 697
LS++ANLTP+SD NQSPRNMYQCQM+KQTMG + R D KLY LQT QTPIVR
Sbjct: 700 LSLLANLTPFSDFNQSPRNMYQCQMSKQTMGTPSGVIHHRTDNKLYRLQTGQTPIVRPAL 759
Query: 698 YTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGN 757
+ Y +D +P GTNA+VAV++YTGYDMEDAMILNKS+ +RG HG +Y++ +DLS +G+
Sbjct: 760 HDVYQMDHFPNGTNAVVAVISYTGYDMEDAMILNKSAHERGFAHGMVYKSMIVDLSPEGS 819
Query: 758 KVDRGQKLFRRNKDAKSLHSV--------IDSDGLPYVGQMIHPGEPYCSIYDKTTNSWR 809
+ +K F K S +DSDG+ VG + G+P C+ D+TT
Sbjct: 820 RTS-SEKHFGIGKSFGGSESSAFNRMCDKLDSDGVALVGSRVRSGDPLCAYVDRTTGKTS 878
Query: 810 TNSRKGSESVFVDYVAV---DMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQ 866
KG E FV+ V + D+ + + K + + R R+P+IGDKFSSRHGQKGVCSQ
Sbjct: 879 FEKYKGDEEAFVEEVRMIGGDVPSKEC--TKIHFKLRVPRSPVIGDKFSSRHGQKGVCSQ 936
Query: 867 LWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
WP IDMPFS +G++PD+IINPHAFPSRMTI M +ES+A K
Sbjct: 937 KWPSIDMPFS-ESGIQPDVIINPHAFPSRMTIGMFVESLAGK 977
>gi|190344605|gb|EDK36311.2| conserved hypothetical protein [Meyerozyma guilliermondii ATCC
6260]
Length = 1166
Score = 715 bits (1846), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/877 (43%), Positives = 552/877 (62%), Gaps = 46/877 (5%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR+ SY +LM V + D V E GQ P+MLK+ RCHL+ +LV K
Sbjct: 106 CRERMTSYRSRLMLKVTWSVNDGEE--VSEVREAGQIPIMLKSNRCHLEKLSPDELVKQK 163
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
EE+ E+GGYFI+NG+E++ R +I+ ++N+PM+++R SF +R YT + IRCVR DQ+
Sbjct: 164 EESDELGGYFIVNGIEKLIRMLIVQRRNHPMAIIRPSFGNRGASYTKFGIQIRCVRPDQT 223
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
S T L+YL +G+V F + EYL+PV +++KALV+T+D EIF+ +
Sbjct: 224 SQTNVLHYLNDGNVTFRFSWRKNEYLVPVMMIMKALVETSDREIFDGIV----------- 272
Query: 218 GA-VGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIR 276
GA + +++R++++L + +L ++ + L ++G+ F+ V S V + V++
Sbjct: 273 GADTSNSFLTDRLELLLRSYKKYNLYSKQETLAYLGDKFRVVFGATPDVSDIEVGQEVLK 332
Query: 277 DYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKL 336
+ VHL D DKF +L+FM++KL++LV DNPD+ Q+QE+LL G L + +KEK+
Sbjct: 333 RIVLVHLEDPKDKFRMLLFMIRKLYTLVAGDCSPDNPDATQHQEVLLGGFLYGMIIKEKI 392
Query: 337 EDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTG 396
E++L+ + I +I N G +F + + +V + ++ IG ++ L TG L +Q+G
Sbjct: 393 EEYLQSIRLQISSDI-NRGVAVNFNDRRYMSRVFLR-INENIGQKLQYFLSTGNLVSQSG 450
Query: 397 LDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPD 456
LDLQQ +GYTV AE++NF RFIS FR VHRG+ FA L+TT+VRKLLPESWGFLCPVHTPD
Sbjct: 451 LDLQQVSGYTVVAEKINFHRFISHFRMVHRGSFFAELKTTTVRKLLPESWGFLCPVHTPD 510
Query: 457 GEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAV 516
G PCGLLNH+ C++A+ D S + ++ + +GV P + P +
Sbjct: 511 GSPCGLLNHLAHKCKIAT------EASDVSTVPAALAQ--LGVS-----PAHAFAAGPNL 557
Query: 517 LSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFT 576
+ LDG+VVG + + V LR KV +P DLE+GYVP S G YPGLY+F
Sbjct: 558 CCIQLDGKVVGWVTHEHGKIVADTLRFWKVEGTHGLPLDLEIGYVPPSNQGQYPGLYIFG 617
Query: 577 SPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC--PDGGDGGRRNAFPATHEEIHP 634
+ +RP + + L ++ ++GPFEQV+M+I P+ + TH E P
Sbjct: 618 GHSRMMRPTKYLPLDKQD-----IVGPFEQVYMDIAVTPPEIENNVH------THVEFSP 666
Query: 635 TGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVR 694
T +LS++ANLTP+SD NQSPRNMYQCQM KQTMG AL R+D KLY LQT QTPIV+
Sbjct: 667 TNVLSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGVALAHRSDNKLYRLQTGQTPIVK 726
Query: 695 TNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSD 754
N Y YG+D +P GTNA+VAV++YTGYDM+DAMI+NKS+ +RG +G +Y+ E +DLS
Sbjct: 727 ANLYDDYGMDNFPNGTNAVVAVISYTGYDMDDAMIINKSADERGFGYGTVYKVEKVDLSQ 786
Query: 755 DGNKVDRGQKLFRRNKDA--KSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNS 812
+ D + F +D+ +S +DSDGLP +G + G+P + +D T + +
Sbjct: 787 SRRRGDPITQHFGFGEDSWPESWKEKLDSDGLPIIGVKVEEGDPIVAYFDDTLGKTKVKT 846
Query: 813 RKGSESVFVDYVAVDMKNSKNLP-QKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDI 871
SE +++ V + +S N Q+ I++R TR P+IGDKFSSRHGQKGVCS+ WP +
Sbjct: 847 YHSSEPAYIEEVKLLGDDSGNQEGQQITIKYRVTRQPLIGDKFSSRHGQKGVCSRKWPQV 906
Query: 872 DMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
DMPFS +G++PD+IINPHAFPSRMTI M +ES+A K
Sbjct: 907 DMPFS-ESGIQPDVIINPHAFPSRMTIGMFVESLAGK 942
>gi|169769719|ref|XP_001819329.1| DNA-directed RNA polymerase I subunit RPA135 [Aspergillus oryzae
RIB40]
gi|238487962|ref|XP_002375219.1| DNA-directed RNA polymerase I subunit beta (Rpa2), putative
[Aspergillus flavus NRRL3357]
gi|83767188|dbj|BAE57327.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|220700098|gb|EED56437.1| DNA-directed RNA polymerase I subunit beta (Rpa2), putative
[Aspergillus flavus NRRL3357]
Length = 1237
Score = 714 bits (1844), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 394/903 (43%), Positives = 560/903 (62%), Gaps = 68/903 (7%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAG-SPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
CR+ +Y GKL A +E++ + VRE GQ P+M++T RCHL+ A +LV
Sbjct: 128 CRERHATYRGKLRARIEYRVNNGDWMEAVRE---LGQVPIMMRTNRCHLEKATPAELVEH 184
Query: 97 KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQ 156
KEE+ E+GGYFI+NG E++ R +I+ K+N+PM++VR SF R YT V IR VR DQ
Sbjct: 185 KEESEELGGYFIVNGNEKLIRMLIVGKRNFPMAIVRGSFVKRGHTYTKFGVQIRSVRPDQ 244
Query: 157 SSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKE 216
+S T L+YL +G+V F + EYL+PV ++LKALV+TND EIF L +
Sbjct: 245 TSQTNVLHYLSDGNVTFRFSWRKNEYLVPVMMILKALVETNDREIFEGLVGSASSE---- 300
Query: 217 KGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIR 276
+ + V++RV+++L + +L +R C ++GE F+PV+ S +R
Sbjct: 301 --GINNTFVTDRVELLLRTYKGYNLHSRSACRAYLGEKFKPVLGVPMDMSNEEAGTEFLR 358
Query: 277 DYIFVHLNDNN-------DKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
+ HL + N DKF L++FM++KL++LV DNPD++ NQEILL G L
Sbjct: 359 KVVLPHLGNQNVTETQDYDKFKLIMFMIRKLYALVAGDCAPDNPDAVSNQEILLGGFLYG 418
Query: 330 IYLKEKLEDWLRKGKKLIQD-EIENNGKKFD--FFNLANIKKVMEKNPSKQIGTSIETML 386
+ LKE+LE+W+R +++D + N+G KF F + KV++++ ++ IG ++E L
Sbjct: 419 MILKERLEEWVRSFGPILRDWSMRNHGAKFTDPSFERDFLSKVVKRS-NENIGGALEYFL 477
Query: 387 KTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESW 446
TG L + TGLDLQQ +GYTV AE++NF RFIS FR +HRG+ FA L+TT+VRKLLPESW
Sbjct: 478 STGNLVSPTGLDLQQTSGYTVMAEKINFYRFISHFRMIHRGSFFAQLKTTTVRKLLPESW 537
Query: 447 GFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSIL-RVLIGVGMIPSL 505
GFLCPVHTPDG PCGLLNH+ C +++ S + S L R+L+ +G+
Sbjct: 538 GFLCPVHTPDGSPCGLLNHLAHKCLIST-----------SDIDVSHLPRLLVQLGVRSES 586
Query: 506 PKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSL 565
++ ++V LDGR+VG + + LR KV + +P +LE+GYVP S
Sbjct: 587 SVSLEE----SVTVQLDGRIVGFCSPKQARMIADTLRHWKVEGSHNVPRELEIGYVPNSN 642
Query: 566 GGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRNA 624
GG YPG+Y+F+ + R V+ + L ++ +GPFEQ FMEI C P G
Sbjct: 643 GGQYPGIYMFSQAARMYREVKYLPL-----DKLDYVGPFEQPFMEIACLPSDLVAG---- 693
Query: 625 FPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYH 684
+TH E PT +LS+VAN+TP+SD+NQSPRNMYQCQM+KQTMG A+ +R D KLY
Sbjct: 694 -ISTHIEFTPTNILSIVANMTPFSDYNQSPRNMYQCQMSKQTMGTPGTAIDYRTDNKLYR 752
Query: 685 LQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQI 744
LQT QTPIVR Y YG+D +P GTNA+VA+++YTGYDM+DAMI+NKSS +RG HG I
Sbjct: 753 LQTGQTPIVRPPLYNAYGLDNFPNGTNAVVAIISYTGYDMDDAMIINKSSHERGFGHGTI 812
Query: 745 YQTETIDLSDDGNKVDRGQ----KLFRRNKDAK---SLHSVIDSDGLPYVGQMIHPGE-- 795
Y+T+ L + ++ ++ + KLF + + ID DGLP++G + G
Sbjct: 813 YKTKVHSLDEKESRRNKSRREITKLFGFAPGGEIRAEWRNTIDEDGLPHIGARVKEGSLV 872
Query: 796 -PYCSI-YDKTTNSW-------RTNSRKGSESVFVDYVAVDMKNSKNLP-QKANIRFRHT 845
Y ++ YD ++S+ K +E ++D + + + P Q ++++R
Sbjct: 873 AAYHNVRYDAASDSYVNVDGITHFVKYKDAEEGYIDSIRIMGAETGIEPCQSLSVKYRIP 932
Query: 846 RNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESV 905
R P+IGDKFSSRHGQKGVCSQLWP +DMPFS +G++PDLIINPHAFPSRMTIA ++ES+
Sbjct: 933 RKPVIGDKFSSRHGQKGVCSQLWPAVDMPFS-ESGIQPDLIINPHAFPSRMTIAQMIESM 991
Query: 906 AAK 908
A K
Sbjct: 992 AGK 994
>gi|255948070|ref|XP_002564802.1| Pc22g07860 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211591819|emb|CAP98074.1| Pc22g07860 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 1249
Score = 714 bits (1842), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 390/908 (42%), Positives = 563/908 (62%), Gaps = 78/908 (8%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPV--VRERFNFGQFPVMLKTRRCHLQGADSQKLVS 95
CR+ +Y GKL A +E+Q ++ G + VRE G P+M++T RCHL+ A +LV
Sbjct: 128 CRERHATYRGKLRARLEYQ-VNNGDWMESVRE---LGNVPIMVRTNRCHLEKATPDELVR 183
Query: 96 LKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKD 155
KEE+ E+GG++I+NG E++ R +I+ K+NYPMS++R SF R + YT V IR VR D
Sbjct: 184 HKEESEELGGFYIVNGNEKLIRMLIVGKRNYPMSIIRGSFVKRGQTYTKFGVQIRSVRPD 243
Query: 156 QSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKK 215
Q+S T L+YL +G+V F + EYL+PV ++LKAL +TND EIF + K
Sbjct: 244 QTSQTNVLHYLSDGNVTFRFSWRKNEYLIPVMMILKALAETNDREIFEAIVGAASSK--- 300
Query: 216 EKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVI 275
+ + V++RV+++L ++ C H+G+ F+PV+ V +
Sbjct: 301 ---GMSNTFVTDRVELLLRTYHAYQKHSQYDCRSHLGKAFRPVLGVPADMPDEEVGTEFL 357
Query: 276 RDYIFVHLNDNN-------DKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLI 328
R + HL + N DKF L+ FM++KL+S V DNPD++ NQEILL G L
Sbjct: 358 RKVVLPHLGNENVTESQDWDKFKLITFMIRKLYSTVAGDCAPDNPDAVSNQEILLGGFLY 417
Query: 329 TIYLKEKLEDWLRKGKKLIQD-EIENNGKKF--DFFNLANIKKVMEKNPSKQIGTSIETM 385
+ LKE++E+WLR + +D I NNG KF + F + K+++++ ++ IG ++E
Sbjct: 418 GMILKERIEEWLRSFGPIARDWSIRNNGAKFTDEAFERDFLSKIVKRS-NENIGNALEYF 476
Query: 386 LKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPES 445
L TG L + TGLDLQQ +GYTV AE++NF RFIS FR +HRG+ FA L+TT+VRKLLPES
Sbjct: 477 LSTGNLVSPTGLDLQQTSGYTVIAEKINFYRFISHFRMIHRGSFFAQLKTTTVRKLLPES 536
Query: 446 WGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSL 505
WGFLCPVHTPDG PCGLLNH++ C +A+ + D S + R L+ +G
Sbjct: 537 WGFLCPVHTPDGSPCGLLNHLSHKCLIAT------DNLDVSHLP----RTLVQLG----- 581
Query: 506 PKLVKSGPPAVLS----VLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYV 561
V+S L V LDGR++G + +++ +R KV + IP +LEVGY+
Sbjct: 582 ---VRSESSVALDESVVVQLDGRIIGYCSPKQAQRIADTIRYWKVEGKNNIPRELEVGYI 638
Query: 562 PLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGR 621
P S GG YPG+Y+F+ + RPV+ ++L ++ +GPFEQ FMEI C +
Sbjct: 639 PNSSGGQYPGVYMFSQSARMYRPVKYLAL-----DKLDYVGPFEQPFMEIACVES----- 688
Query: 622 RNAFP--ATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRAD 679
+ P +TH E PT +LS+VAN+TP+SD+NQSPRNMYQCQM+KQTMG ++ R D
Sbjct: 689 -DLIPGLSTHIEFTPTNILSIVANMTPFSDYNQSPRNMYQCQMSKQTMGTPGTSIAHRTD 747
Query: 680 QKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGM 739
KLY +QT QTPIVR Y YG+D +P G NA+VA+++YTGYDM+DAMI+NKS+ +RG
Sbjct: 748 NKLYRIQTGQTPIVRPPLYNAYGLDNFPNGMNAVVAIISYTGYDMDDAMIINKSAHERGF 807
Query: 740 CHGQIYQTETIDLSDDGNKVDRGQ----KLFR---RNKDAKSLHSVIDSDGLPYVGQMIH 792
HG +Y+T+ + L+++ ++ ++ + KLF ++ + + ID DG+P++G +
Sbjct: 808 GHGTVYKTKVVTLAENDSRRNKSKREVTKLFGFAPGDEIKDQVRNTIDEDGMPHLGARVK 867
Query: 793 PGEPYCSI----YDKTTNSW-------RTNSRKGSESVFVDYVAVDMKNSKNLP-QKANI 840
G+ + +D ++S+ K +E +VD + + S N P Q +I
Sbjct: 868 EGDKIAAWHNVRFDPASDSYVNVDGVTHYMKYKDAEEGYVDSIRIMGSESGNEPAQSLSI 927
Query: 841 RFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAM 900
++R R P+IGDKFSSRHGQKGV SQLWP +DMPFS +GM+PDLIINPHAFPSRMTIA
Sbjct: 928 KYRIPRKPVIGDKFSSRHGQKGVLSQLWPAVDMPFS-ESGMQPDLIINPHAFPSRMTIAQ 986
Query: 901 LLESVAAK 908
++ES+A K
Sbjct: 987 MIESMAGK 994
>gi|146422181|ref|XP_001487032.1| conserved hypothetical protein [Meyerozyma guilliermondii ATCC
6260]
Length = 1166
Score = 714 bits (1842), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/877 (43%), Positives = 552/877 (62%), Gaps = 46/877 (5%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR+ SY +LM V + D V E GQ P+MLK+ RCHL+ +LV K
Sbjct: 106 CRERMTSYRSRLMLKVTWSVNDGEE--VSEVREAGQIPIMLKSNRCHLEKLSPDELVKQK 163
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
EE+ E+GGYFI+NG+E++ R +I+ ++N+PM+++R SF +R YT + IRCVR DQ+
Sbjct: 164 EESDELGGYFIVNGIEKLIRMLIVQRRNHPMAIIRPSFGNRGASYTKFGIQIRCVRPDQT 223
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
S T L+YL +G+V F + EYL+PV +++KALV+T+D EIF+ +
Sbjct: 224 SQTNVLHYLNDGNVTFRFSWRKNEYLVPVMMIMKALVETSDREIFDGIV----------- 272
Query: 218 GA-VGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIR 276
GA + +++R++++L + +L ++ + L ++G+ F+ V S V + V++
Sbjct: 273 GADTSNSFLTDRLELLLRSYKKYNLYSKQETLAYLGDKFRVVFGATPDVSDIEVGQEVLK 332
Query: 277 DYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKL 336
+ VHL D DKF +L+FM++KL++LV DNPD+ Q+QE+LL G L + +KEK+
Sbjct: 333 RIVLVHLEDPKDKFRMLLFMIRKLYTLVAGDCSPDNPDATQHQEVLLGGFLYGMIIKEKI 392
Query: 337 EDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTG 396
E++L+ + I +I N G +F + + +V + ++ IG ++ L TG L +Q+G
Sbjct: 393 EEYLQSIRLQILSDI-NRGVAVNFNDRRYMSRVFLR-INENIGQKLQYFLSTGNLVSQSG 450
Query: 397 LDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPD 456
LDLQQ +GYTV AE++NF RFIS FR VHRG+ FA L+TT+VRKLLPESWGFLCPVHTPD
Sbjct: 451 LDLQQVSGYTVVAEKINFHRFISHFRMVHRGSFFAELKTTTVRKLLPESWGFLCPVHTPD 510
Query: 457 GEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAV 516
G PCGLLNH+ C++A+ D S + ++ + +GV P + P +
Sbjct: 511 GSPCGLLNHLAHKCKIAT------EASDVSTVPAALAQ--LGVS-----PAHAFAAGPNL 557
Query: 517 LSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFT 576
+ LDG+VVG + + V LR KV +P DLE+GYVP S G YPGLY+F
Sbjct: 558 CCIQLDGKVVGWVTHEHGKIVADTLRFWKVEGTHGLPLDLEIGYVPPSNQGQYPGLYIFG 617
Query: 577 SPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC--PDGGDGGRRNAFPATHEEIHP 634
+ +RP + + L ++ ++GPFEQV+M+I P+ + TH E P
Sbjct: 618 GHSRMMRPTKYLPLDKQD-----IVGPFEQVYMDIAVTPPEIENNVH------THVEFSP 666
Query: 635 TGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVR 694
T +LS++ANLTP+SD NQSPRNMYQCQM KQTMG AL R+D KLY LQT QTPIV+
Sbjct: 667 TNVLSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGVALAHRSDNKLYRLQTGQTPIVK 726
Query: 695 TNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSD 754
N Y YG+D +P GTNA+VAV++YTGYDM+DAMI+NKS+ +RG +G +Y+ E +DLS
Sbjct: 727 ANLYDDYGMDNFPNGTNAVVAVISYTGYDMDDAMIINKSADERGFGYGTVYKVEKVDLSQ 786
Query: 755 DGNKVDRGQKLFRRNKDA--KSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNS 812
+ D + F +D+ +S +DSDGLP +G + G+P + +D T + +
Sbjct: 787 SRRRGDPITQHFGFGEDSWPESWKEKLDSDGLPIIGVKVEEGDPIVAYFDDTLGKTKVKT 846
Query: 813 RKGSESVFVDYVAVDMKNSKNLP-QKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDI 871
SE +++ V + +S N Q+ I++R TR P+IGDKFSSRHGQKGVCS+ WP +
Sbjct: 847 YHSSEPAYIEEVKLLGDDSGNQEGQQITIKYRVTRQPLIGDKFSSRHGQKGVCSRKWPQV 906
Query: 872 DMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
DMPFS +G++PD+IINPHAFPSRMTI M +ES+A K
Sbjct: 907 DMPFS-ESGIQPDVIINPHAFPSRMTIGMFVESLAGK 942
>gi|410077755|ref|XP_003956459.1| hypothetical protein KAFR_0C03320 [Kazachstania africana CBS 2517]
gi|372463043|emb|CCF57324.1| hypothetical protein KAFR_0C03320 [Kazachstania africana CBS 2517]
Length = 1206
Score = 713 bits (1841), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 388/884 (43%), Positives = 553/884 (62%), Gaps = 54/884 (6%)
Query: 39 RQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKE 98
RQ +Y GKLM +++ D G E + G PVML++ RCHL +LV +E
Sbjct: 130 RQRLATYKGKLMLKLKWSVND-GEETYSEIRDCGGLPVMLQSNRCHLNKLSPHELVRERE 188
Query: 99 EAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSS 158
E+ EMGGYFI+NG+E++ R +I+ ++N+PM+++R SF +R Y+ + IR VR DQ+S
Sbjct: 189 ESDEMGGYFIINGIEKLIRMLIVQRRNHPMAIIRPSFVNRGASYSQYGIQIRSVRPDQTS 248
Query: 159 VTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKG 218
T L+YL +G V F + EYL+PV ++LKAL D +D EIF+ G
Sbjct: 249 QTNVLHYLNDGQVTFRFSWRKNEYLIPVVMILKALYDISDREIFD--------------G 294
Query: 219 AVGS----PLVSERVKIILAEVQDL--SLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAE 272
VGS +++R++++L + +L R Q LQ++G+ F+ V +S Y V +
Sbjct: 295 IVGSDTANSFLTDRLELLLRGFKKRYPTLQNRTQILQYLGDKFRFVFQASPDKSDYEVGQ 354
Query: 273 TVIRDYIFVHL--NDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITI 330
VI + VHL N+N DK +L+FM++KL+SLV DNPD+ Q+QE+LL G L +
Sbjct: 355 EVINRIVLVHLGQNNNQDKLRMLLFMIRKLYSLVAGECAPDNPDATQHQEVLLGGFLYGM 414
Query: 331 YLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGR 390
+KEK++++L+ ++ ++ N G +F + + +V+ + ++ IG+ ++ L TG
Sbjct: 415 IIKEKIDEYLQGIMAQVRTDV-NRGMAINFKDRKYMSRVLMR-VNENIGSKLQYFLSTGN 472
Query: 391 LATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLC 450
L +Q+GLDLQQ +GY V AE++NF RFIS FR VHRG+ FA L+TT+VRKLLPESWGFLC
Sbjct: 473 LVSQSGLDLQQVSGYVVVAEKINFHRFISHFRMVHRGSFFAQLKTTAVRKLLPESWGFLC 532
Query: 451 PVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVK 510
PVHTPDG PCGLLNH CR+++ D S+ + +L +G+ P+
Sbjct: 533 PVHTPDGSPCGLLNHFAHKCRIST------KQSDVSQ----VAPLLYSLGVAPASHTFAA 582
Query: 511 SGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASV-IPDDLEVGYVPLSLGGAY 569
P++ V LDG+++G + + + + LR LKV + +P DLE+GYVP S G Y
Sbjct: 583 G--PSLCCVQLDGKIIGCVSHEQGKIIADTLRFLKVEGKTPGLPLDLEIGYVPPSTKGQY 640
Query: 570 PGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRNAFPAT 628
PGLYLF + +RPVR + L E+ ++GPFEQV+M I P + +
Sbjct: 641 PGLYLFAGHSRMMRPVRYLPLDKED-----IVGPFEQVYMNIAVTPQEIENNIH-----S 690
Query: 629 HEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTP 688
H E PT +LS++ANLTP+SD NQSPRNMYQCQM KQTMG AL R+D KLY LQ+
Sbjct: 691 HVEFTPTNILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGVALCHRSDNKLYRLQSG 750
Query: 689 QTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTE 748
QTPIV+ N Y +YG+D +P GTNA+VAV++YTGYDM+DAMI+NKS+ +RG +G +Y+ E
Sbjct: 751 QTPIVKANLYDEYGMDNFPNGTNAVVAVISYTGYDMDDAMIINKSADERGFAYGTMYKVE 810
Query: 749 TIDLSDDGNKVDRGQKLFRRNKDA--KSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTN 806
+DL+ + N+ D + F D K +D DGLPY+G + G+P C+ +D T N
Sbjct: 811 KVDLALNRNRGDPITQHFGFGNDEWPKEWLDKLDDDGLPYIGTYVEEGDPICAYFDDTLN 870
Query: 807 SWRTNSRKGSESVFVDYVAV--DMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVC 864
+T + SE +++ V + D N Q +I++R R P IGDKFSSRHGQKGVC
Sbjct: 871 KTKTKTYHSSEPAYIEEVNLIGDDSNKFQELQTVSIKYRIRRTPQIGDKFSSRHGQKGVC 930
Query: 865 SQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
S+ WP IDMPFS TG++PD+IINPHAFPSRMTI M +ES+A K
Sbjct: 931 SRKWPTIDMPFS-ETGIQPDVIINPHAFPSRMTIGMFVESLAGK 973
>gi|344299740|gb|EGW30093.1| hypothetical protein SPAPADRAFT_144076 [Spathaspora passalidarum
NRRL Y-27907]
Length = 1165
Score = 713 bits (1841), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/876 (43%), Positives = 551/876 (62%), Gaps = 42/876 (4%)
Query: 37 HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
CR+ +Y +LM V + D V E GQ P+ML+T RCHL+ ++LV
Sbjct: 106 ECRERMSTYRSRLMLKVSWSVNDGEE--VSEIREAGQIPIMLQTNRCHLEKLSPKQLVEA 163
Query: 97 KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQ 156
KEE+ E+GGYFI+NG+E++ R +I+ ++N+PM+++R SF +R YT + IRCVR DQ
Sbjct: 164 KEESDELGGYFIVNGIEKLIRMLIVQRRNHPMALIRPSFGNRGASYTKYGIQIRCVRPDQ 223
Query: 157 SSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKE 216
+S T L+YL +G+V F + EYL+PV ++LKALV+TND EIF+ +
Sbjct: 224 TSQTNVLHYLNDGNVTFRFSWRKNEYLVPVTMILKALVETNDREIFDGIV---------- 273
Query: 217 KGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIR 276
V + +++R++++L + +L ++ + L ++G+ F+ V S V + V++
Sbjct: 274 GNDVDNSFLTDRLELLLRTYKSYNLYSKQETLAYLGDKFRVVFGATPDVSDIDVGKEVLK 333
Query: 277 DYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKL 336
+ VHL +N DKF +L+FM++KL+SLV DNPD+ Q+QE+LL G L + +KEK+
Sbjct: 334 RIVLVHLPNNTDKFRMLLFMIRKLYSLVAGDCSPDNPDATQHQEVLLGGFLYGMIIKEKI 393
Query: 337 EDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTG 396
E++L+ K I +I N G +F + + +V + ++ IG ++ L TG L +Q+G
Sbjct: 394 EEYLQNIKLQITSDI-NRGVAINFNDRKYMTRVFSR-INENIGQKLQYFLSTGNLVSQSG 451
Query: 397 LDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPD 456
LDLQQ +GYTV AE++NF RFIS FR VHRG+ FA L+TT+VRKLLPESWGFLCPVHTPD
Sbjct: 452 LDLQQVSGYTVVAEKINFYRFISHFRMVHRGSFFAELKTTTVRKLLPESWGFLCPVHTPD 511
Query: 457 GEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAV 516
G PCGLLNH+ C++A+ DS D S++ +++ ++ I P + P +
Sbjct: 512 GSPCGLLNHLAHKCKIATE-DS-----DVSQVTSALAQLGIS-------PADSFAAGPNL 558
Query: 517 LSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFT 576
V LDG++VG + + V LR KV + +P DLE+GYVP S G YPGL++F
Sbjct: 559 CCVQLDGKIVGWTTHEQGKIVADTLRFWKVEGSHGLPLDLEIGYVPPSTKGQYPGLFIFG 618
Query: 577 SPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRNAFPATHEEIHPT 635
+ +RPV+ + L ++ ++GPFEQV+M + P+ + +H E PT
Sbjct: 619 GRSRMMRPVKYLPLNKQD-----ILGPFEQVYMNVAVTPEEIENNIH-----SHVEFTPT 668
Query: 636 GMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRT 695
+LS++ANLTP+SD NQSPRNMYQCQM KQTMG AL R+D KLY LQT QTPIV+
Sbjct: 669 NILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGTALVHRSDNKLYRLQTGQTPIVKA 728
Query: 696 NTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDD 755
N Y YG+D +P G NA+VAV++YTGYDM+DAMI+NKS+ +RG +G +Y+ E +DL
Sbjct: 729 NLYDDYGMDNFPNGMNAVVAVISYTGYDMDDAMIINKSADERGFGYGTVYKVEKVDLGQS 788
Query: 756 GNKVDRGQKLFRRNKDA--KSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSR 813
+ D + F D ++ +D DGLP +G + G+P + YD T + +
Sbjct: 789 RRRGDPITQHFGFGDDEWPETWKEKLDDDGLPLIGVKVEEGDPIVAYYDDTLGKTKVKTY 848
Query: 814 KGSESVFVDYVAVDMKNSKNLP-QKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDID 872
SE +++ V + ++ + Q I++R TR P+IGDKFSSRHGQKGVCS+ WP ID
Sbjct: 849 HSSEPAYIEEVKLLGDDTGDQEGQMLTIKYRITRAPLIGDKFSSRHGQKGVCSRKWPQID 908
Query: 873 MPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
MPFS TG++PD+IINPHAFPSRMTI M +ES+A K
Sbjct: 909 MPFS-ETGIQPDVIINPHAFPSRMTIGMFVESLAGK 943
>gi|317032172|ref|XP_001394181.2| DNA-directed RNA polymerase I subunit RPA135 [Aspergillus niger CBS
513.88]
gi|350631029|gb|EHA19400.1| hypothetical protein ASPNIDRAFT_55936 [Aspergillus niger ATCC 1015]
Length = 1236
Score = 713 bits (1841), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 391/904 (43%), Positives = 559/904 (61%), Gaps = 70/904 (7%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPV--VRERFNFGQFPVMLKTRRCHLQGADSQKLVS 95
CR+ +Y GKL A +E++ ++ G + VRE GQ P+ML+T RCHL+ A +LV
Sbjct: 128 CRERHATYRGKLRARIEWR-VNNGDWMESVRE---LGQVPIMLRTNRCHLEKATPSELVE 183
Query: 96 LKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKD 155
KEE+ E+GGYFI+NG E++ R +++ K+NYPM+++R SF R YT V IR VR D
Sbjct: 184 HKEESEELGGYFIVNGNEKLIRMLVVGKRNYPMAIIRGSFVRRGHTYTKYGVQIRSVRPD 243
Query: 156 QSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKK 215
Q+S T L+YL +G++ F + EYL+PV ++LKALV+TND EIF + +
Sbjct: 244 QTSQTNVLHYLTDGNLTFRFSWRKAEYLVPVMMILKALVETNDREIFEGIVGSASSE--- 300
Query: 216 EKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVI 275
+ + V++RV+++L + + +R C ++GE F+PV+ S +
Sbjct: 301 ---GIKNTFVTDRVELLLRVYKAYNTHSRAACRAYLGEKFRPVLGVPADMSNEDAGTEFL 357
Query: 276 RDYIFVHLNDNN-------DKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLI 328
R + HL + N DKF +++FM++KL++LV DNPD++ NQEILL G L
Sbjct: 358 RKVVLPHLGNQNVTENQDYDKFKMILFMIRKLYALVAGDCAPDNPDAVSNQEILLGGFLY 417
Query: 329 TIYLKEKLEDWLRKGKKLIQD-EIENNGKKFD--FFNLANIKKVMEKNPSKQIGTSIETM 385
+ LKE+LE+W+R + +++D N G KF F + KV++++ ++ +G ++E
Sbjct: 418 GMILKERLEEWVRSFQPILRDWSNRNGGAKFTDPAFERDFLAKVVKRS-NENLGGALEYF 476
Query: 386 LKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPES 445
L TG L + TGLDLQQ +GYTV AE++NF RFIS FR +HRG+ FA L+TT+VRKLLPES
Sbjct: 477 LSTGNLVSPTGLDLQQPSGYTVMAEKINFYRFISHFRMIHRGSFFAQLKTTTVRKLLPES 536
Query: 446 WGFLCPVHTPDGEPCGLLNHMTSTCRVA-SYYDSRGNIRDFSKMRTSILRVLIGVGMIPS 504
WGF CPVHTPDG PCGLLNH+ C +A S D+ T I + L+ +G+
Sbjct: 537 WGFFCPVHTPDGSPCGLLNHLAHKCLIATSDVDT-----------THIPKALVQLGVRSD 585
Query: 505 LPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLS 564
V ++V LDGR++G + + LRR KV + IP +LE+GY+P +
Sbjct: 586 SSVSVTES----VTVQLDGRIIGYCSPKQASAIANTLRRWKVMGSDKIPRELEIGYIPNT 641
Query: 565 LGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRN 623
GG YPG+Y+F+ + RPV+++ L ++ +GPFEQ FMEI C P G
Sbjct: 642 NGGQYPGIYMFSQAARMYRPVKHLGL-----DKLDYVGPFEQPFMEIACLPQDLISG--- 693
Query: 624 AFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLY 683
+TH E PT +LS+VAN+TP+SD NQSPRNMYQCQM+KQTMG A+++R D KLY
Sbjct: 694 --VSTHIEFTPTNILSIVANMTPFSDQNQSPRNMYQCQMSKQTMGTPGTAIQYRTDNKLY 751
Query: 684 HLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQ 743
LQT QTPIVR Y YG+D +P GTNA+VA+++YTGYDM+DAMI+NKSS +RG +G
Sbjct: 752 RLQTGQTPIVRPPLYNAYGLDNFPNGTNAVVAIISYTGYDMDDAMIINKSSHERGFGYGT 811
Query: 744 IYQTETIDLSDDGNKVDRGQ----KLFRRNKDAK---SLHSVIDSDGLPYVGQMIHPGEP 796
IY+T+ L + ++ + + KLF + + +D DGLP++G + G
Sbjct: 812 IYKTKIHSLDEKDSRRGKSRREVTKLFGFAPGGEIRADWRATLDEDGLPHIGARVKEGSL 871
Query: 797 YCSI----YDKTTNSW-------RTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRH 844
+ YD ++S+ K +E ++D V + S P +A ++++R
Sbjct: 872 VAAWHTVRYDAASDSYVNVDGITHFVKYKDAEEGYIDSVRILGAESGVEPGQALSVKYRI 931
Query: 845 TRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLES 904
R PIIGDKFSSRHGQKGVCSQLWP +DMPFS +G++PDLIINPHAFPSRMTIA ++ES
Sbjct: 932 PRKPIIGDKFSSRHGQKGVCSQLWPAVDMPFS-ESGIQPDLIINPHAFPSRMTIAQMIES 990
Query: 905 VAAK 908
+A K
Sbjct: 991 MAGK 994
>gi|134078852|emb|CAK45911.1| unnamed protein product [Aspergillus niger]
Length = 1213
Score = 712 bits (1839), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 391/904 (43%), Positives = 559/904 (61%), Gaps = 70/904 (7%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPV--VRERFNFGQFPVMLKTRRCHLQGADSQKLVS 95
CR+ +Y GKL A +E++ ++ G + VRE GQ P+ML+T RCHL+ A +LV
Sbjct: 128 CRERHATYRGKLRARIEWR-VNNGDWMESVRE---LGQVPIMLRTNRCHLEKATPSELVE 183
Query: 96 LKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKD 155
KEE+ E+GGYFI+NG E++ R +++ K+NYPM+++R SF R YT V IR VR D
Sbjct: 184 HKEESEELGGYFIVNGNEKLIRMLVVGKRNYPMAIIRGSFVRRGHTYTKYGVQIRSVRPD 243
Query: 156 QSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKK 215
Q+S T L+YL +G++ F + EYL+PV ++LKALV+TND EIF + +
Sbjct: 244 QTSQTNVLHYLTDGNLTFRFSWRKAEYLVPVMMILKALVETNDREIFEGIVGSASSE--- 300
Query: 216 EKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVI 275
+ + V++RV+++L + + +R C ++GE F+PV+ S +
Sbjct: 301 ---GIKNTFVTDRVELLLRVYKAYNTHSRAACRAYLGEKFRPVLGVPADMSNEDAGTEFL 357
Query: 276 RDYIFVHLNDNN-------DKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLI 328
R + HL + N DKF +++FM++KL++LV DNPD++ NQEILL G L
Sbjct: 358 RKVVLPHLGNQNVTENQDYDKFKMILFMIRKLYALVAGDCAPDNPDAVSNQEILLGGFLY 417
Query: 329 TIYLKEKLEDWLRKGKKLIQD-EIENNGKKFD--FFNLANIKKVMEKNPSKQIGTSIETM 385
+ LKE+LE+W+R + +++D N G KF F + KV++++ ++ +G ++E
Sbjct: 418 GMILKERLEEWVRSFQPILRDWSNRNGGAKFTDPAFERDFLAKVVKRS-NENLGGALEYF 476
Query: 386 LKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPES 445
L TG L + TGLDLQQ +GYTV AE++NF RFIS FR +HRG+ FA L+TT+VRKLLPES
Sbjct: 477 LSTGNLVSPTGLDLQQPSGYTVMAEKINFYRFISHFRMIHRGSFFAQLKTTTVRKLLPES 536
Query: 446 WGFLCPVHTPDGEPCGLLNHMTSTCRVA-SYYDSRGNIRDFSKMRTSILRVLIGVGMIPS 504
WGF CPVHTPDG PCGLLNH+ C +A S D+ T I + L+ +G+
Sbjct: 537 WGFFCPVHTPDGSPCGLLNHLAHKCLIATSDVDT-----------THIPKALVQLGVRSD 585
Query: 505 LPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLS 564
V ++V LDGR++G + + LRR KV + IP +LE+GY+P +
Sbjct: 586 SSVSVTES----VTVQLDGRIIGYCSPKQASAIANTLRRWKVMGSDKIPRELEIGYIPNT 641
Query: 565 LGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRN 623
GG YPG+Y+F+ + RPV+++ L ++ +GPFEQ FMEI C P G
Sbjct: 642 NGGQYPGIYMFSQAARMYRPVKHLGL-----DKLDYVGPFEQPFMEIACLPQDLISG--- 693
Query: 624 AFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLY 683
+TH E PT +LS+VAN+TP+SD NQSPRNMYQCQM+KQTMG A+++R D KLY
Sbjct: 694 --VSTHIEFTPTNILSIVANMTPFSDQNQSPRNMYQCQMSKQTMGTPGTAIQYRTDNKLY 751
Query: 684 HLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQ 743
LQT QTPIVR Y YG+D +P GTNA+VA+++YTGYDM+DAMI+NKSS +RG +G
Sbjct: 752 RLQTGQTPIVRPPLYNAYGLDNFPNGTNAVVAIISYTGYDMDDAMIINKSSHERGFGYGT 811
Query: 744 IYQTETIDLSDDGNKVDRGQ----KLFRRNKDAK---SLHSVIDSDGLPYVGQMIHPGEP 796
IY+T+ L + ++ + + KLF + + +D DGLP++G + G
Sbjct: 812 IYKTKIHSLDEKDSRRGKSRREVTKLFGFAPGGEIRADWRATLDEDGLPHIGARVKEGSL 871
Query: 797 YCSI----YDKTTNSW-------RTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRH 844
+ YD ++S+ K +E ++D V + S P +A ++++R
Sbjct: 872 VAAWHTVRYDAASDSYVNVDGITHFVKYKDAEEGYIDSVRILGAESGVEPGQALSVKYRI 931
Query: 845 TRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLES 904
R PIIGDKFSSRHGQKGVCSQLWP +DMPFS +G++PDLIINPHAFPSRMTIA ++ES
Sbjct: 932 PRKPIIGDKFSSRHGQKGVCSQLWPAVDMPFS-ESGIQPDLIINPHAFPSRMTIAQMIES 990
Query: 905 VAAK 908
+A K
Sbjct: 991 MAGK 994
>gi|358367426|dbj|GAA84045.1| DNA-directed RNA polymerase I subunit beta [Aspergillus kawachii
IFO 4308]
Length = 1236
Score = 712 bits (1839), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 393/904 (43%), Positives = 558/904 (61%), Gaps = 70/904 (7%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPV--VRERFNFGQFPVMLKTRRCHLQGADSQKLVS 95
CR+ +Y GKL A +E++ ++ G + VRE GQ P+ML+T RCHL+ A +LV
Sbjct: 128 CRERHATYRGKLRARLEWR-VNNGDWMESVRE---LGQVPIMLRTNRCHLEKATPNELVE 183
Query: 96 LKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKD 155
KEE+ E+GGYFI+NG E++ R +++ K+NYPM++VR SF R YT V IR VR D
Sbjct: 184 HKEESEELGGYFIVNGNEKLIRMLVVGKRNYPMAIVRGSFVRRGHTYTKYGVQIRSVRPD 243
Query: 156 QSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKK 215
Q+S T L+YL +G++ F + EYL+PV ++LKALV+TND EIF + +
Sbjct: 244 QTSQTNVLHYLTDGNLTFRFSWRKAEYLVPVMMILKALVETNDREIFEGIVGSASSE--- 300
Query: 216 EKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVI 275
+ + V++RV+++L + + +R C ++GE F+PV+ S +
Sbjct: 301 ---GIKNTFVTDRVELLLRVYKAYNTHSRAACRAYLGEKFRPVLGVPADMSNEDAGTEFL 357
Query: 276 RDYIFVHLNDNN-------DKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLI 328
R + HL + N DKF +L+FM++KL++LV DNPD++ NQEILL G L
Sbjct: 358 RKVVLPHLGNQNVTENQDYDKFKMLLFMIRKLYALVAGDCAPDNPDAVSNQEILLGGFLY 417
Query: 329 TIYLKEKLEDWLRKGKKLIQD-EIENNGKKFD--FFNLANIKKVMEKNPSKQIGTSIETM 385
+ LKE+LE+W+R + +++D N G F F + KV++++ ++ IG ++E
Sbjct: 418 GMILKERLEEWVRSFQPILRDWSNRNAGATFTDPAFERDFLAKVVKRS-NENIGGALEYF 476
Query: 386 LKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPES 445
L TG L + TGLDLQQ +GYTV AE++NF RFIS FR +HRG+ FA L+TT+VRKLLPES
Sbjct: 477 LSTGNLVSPTGLDLQQPSGYTVMAEKINFYRFISHFRMIHRGSFFAQLKTTTVRKLLPES 536
Query: 446 WGFLCPVHTPDGEPCGLLNHMTSTCRVA-SYYDSRGNIRDFSKMRTSILRVLIGVGMIPS 504
WGF CPVHTPDG PCGLLNH+ C +A S D+ T I + L+ +G+
Sbjct: 537 WGFFCPVHTPDGSPCGLLNHLAHKCLIATSDVDT-----------THIPKALVQLGVRSD 585
Query: 505 LPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLS 564
V ++V LDGR++G + + LRR KV + IP +LE+GY+P +
Sbjct: 586 SSVSVTES----VTVQLDGRIIGYCSPKQASAIANTLRRWKVMGSDKIPRELEIGYIPNT 641
Query: 565 LGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRN 623
GG YPG+Y+F+ + RPV+++ L ++ +GPFEQ FMEI C P G
Sbjct: 642 NGGQYPGIYMFSQAARMYRPVKHLGL-----DKLDYVGPFEQPFMEIACLPQDLISG--- 693
Query: 624 AFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLY 683
+TH E PT +LS+VAN+TP+SD NQSPRNMYQCQM+KQTMG A+++R D KLY
Sbjct: 694 --VSTHIEFTPTNILSIVANMTPFSDQNQSPRNMYQCQMSKQTMGTPGTAIQYRTDNKLY 751
Query: 684 HLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQ 743
LQT QTPIVR Y YG+D +P GTNA+VA+++YTGYDM+DAMI+NKSS +RG +G
Sbjct: 752 RLQTGQTPIVRPPLYNAYGLDNFPNGTNAVVAIISYTGYDMDDAMIINKSSHERGFGYGT 811
Query: 744 IYQTETIDLSDDGNKVDRGQ----KLFRRNKDAK---SLHSVIDSDGLPYVGQMIHPGEP 796
IY+T+ L + ++ + + KLF + + +D DGLP++G + G
Sbjct: 812 IYKTKIHSLDEKDSRRGKSRREVTKLFGFAPGGEIRADWRATLDEDGLPHIGARVKEGSL 871
Query: 797 YCSI----YDKTTNSW-------RTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRH 844
+ YD ++S+ K +E ++D V + S P +A ++++R
Sbjct: 872 VAAWHTVRYDAASDSYVNVDGITHFVKYKDAEEGYIDSVRILGAESGVEPGQALSVKYRI 931
Query: 845 TRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLES 904
R PIIGDKFSSRHGQKGVCSQLWP +DMPFS +G++PDLIINPHAFPSRMTIA ++ES
Sbjct: 932 PRKPIIGDKFSSRHGQKGVCSQLWPAVDMPFS-ESGIQPDLIINPHAFPSRMTIAQMIES 990
Query: 905 VAAK 908
+A K
Sbjct: 991 MAGK 994
>gi|156845523|ref|XP_001645652.1| hypothetical protein Kpol_541p37 [Vanderwaltozyma polyspora DSM
70294]
gi|156116318|gb|EDO17794.1| hypothetical protein Kpol_541p37 [Vanderwaltozyma polyspora DSM
70294]
Length = 1204
Score = 712 bits (1838), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 394/886 (44%), Positives = 555/886 (62%), Gaps = 54/886 (6%)
Query: 37 HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
RQ SY GKL+ +++ D G V+ + + G P+ML++ RCHL LV
Sbjct: 125 EARQRLTSYRGKLLMKLKWSVND-GEEVLTDMRDGGGLPIMLQSNRCHLNKLSPYDLVQR 183
Query: 97 KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQ 156
KEE+ E+GGYFI+NG+E++ R +I+ ++N+PM+++R SF +R YT + IR VR DQ
Sbjct: 184 KEESDELGGYFIVNGIEKLIRMLIVQRRNHPMAIIRPSFANRGASYTQYGIQIRSVRNDQ 243
Query: 157 SSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKE 216
+S T L+YL +G V F + EYL+P ++LKAL DT+D EIF+
Sbjct: 244 TSQTNVLHYLNDGQVTFRFSWRKNEYLIPAVMILKALCDTSDREIFD------------- 290
Query: 217 KGAVGSPL----VSERVKIILAEVQDL--SLTTRLQCLQHIGEHFQPVIDGLQSESYYAV 270
G +GS + +++R++++L + L R Q LQ+IG+ F+ V +S Y V
Sbjct: 291 -GIIGSDIKNSFLTDRLELLLRGFKKRYPQLQNRTQVLQYIGDKFRVVFQASPDKSDYDV 349
Query: 271 AETVIRDYIFVHLN--DNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLI 328
+ V+ + VHL +N DK +L+FM++KL+SLV DNPD+ Q+QE+LL G L
Sbjct: 350 GQEVLNRIVLVHLGTGNNEDKSRMLMFMIRKLYSLVAGECCPDNPDATQHQEVLLGGFLY 409
Query: 329 TIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKT 388
+ LKEK++++L+ I+ +I N G +F + + +V+ + ++ IG+ ++ L T
Sbjct: 410 GMILKEKMDEYLQSIIAQIRADI-NRGMAINFKDRKYMSRVLMR-VNENIGSKLQYFLST 467
Query: 389 GRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGF 448
G L +Q+GLDLQQ +GYTV AE++NF RFIS FR VHRG+ FA L+TT+VRKLLPESWGF
Sbjct: 468 GNLVSQSGLDLQQVSGYTVVAEKINFYRFISHFRMVHRGSFFAQLKTTTVRKLLPESWGF 527
Query: 449 LCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKL 508
LCPVHTPDG PCGLLNH CR+++ D SK I +L +G+ P+ +
Sbjct: 528 LCPVHTPDGSPCGLLNHFAHKCRISTIQS------DVSK----IPELLYSLGVTPA-SQT 576
Query: 509 VKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASV-IPDDLEVGYVPLSLGG 567
V +GP ++ V LDG++VG + E + V LR KV + +P DLE+GYVP S G
Sbjct: 577 VAAGP-SLCCVQLDGKIVGWVSHDEGKIVADTLRFWKVEGKTPGLPLDLEIGYVPPSSSG 635
Query: 568 AYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRNAFP 626
YPGLY+F + +RPVR + L E+ ++GPFEQV+M I P +
Sbjct: 636 QYPGLYIFGGHSRMMRPVRYLPLGKED-----IVGPFEQVYMNIAVTPQEIENNIH---- 686
Query: 627 ATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQ 686
+H E PT +LS++ANLTP+SD NQSPRNMYQCQM KQTMG AL R+D KLY LQ
Sbjct: 687 -SHVEFTPTNILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGVALCHRSDNKLYRLQ 745
Query: 687 TPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQ 746
+ QTPIV+ N Y YG+D +P GTNA+VAV++YTGYDM+DAMI+NKS+ +RG +G +Y+
Sbjct: 746 SGQTPIVKANLYDDYGMDNFPNGTNAVVAVISYTGYDMDDAMIINKSADERGFGYGTMYK 805
Query: 747 TETIDLSDDGNKVDRGQKLFRRNKDA--KSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKT 804
E +DLS + ++ D + F D K +D DGLPY+G + G+P C+ +D T
Sbjct: 806 VEKVDLSMNRSRGDPITQHFGFGPDEWPKEWLEKLDEDGLPYIGTYVEEGDPICAYFDDT 865
Query: 805 TNSWRTNSRKGSESVFVDYVAV--DMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKG 862
N + + SE +++ V + D N Q +I++R R P IGDKFSSRHGQKG
Sbjct: 866 LNKTKIKTYHSSEPAYIEEVNLIGDESNKFQELQTVSIKYRIRRTPQIGDKFSSRHGQKG 925
Query: 863 VCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
VCS+ WP IDMPFS TG++PD+IINPHAFPSRMTI M +ES+A K
Sbjct: 926 VCSRKWPTIDMPFS-ETGIQPDVIINPHAFPSRMTIGMFVESLAGK 970
>gi|50303741|ref|XP_451816.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49640948|emb|CAH02209.1| KLLA0B06303p [Kluyveromyces lactis]
Length = 1203
Score = 712 bits (1837), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 391/880 (44%), Positives = 557/880 (63%), Gaps = 47/880 (5%)
Query: 39 RQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKE 98
RQ SY GK++ +++ D G E + G P+ML++ RCHL +LV +E
Sbjct: 127 RQRLTSYRGKILLKLKWSVND-GEETFTEVRDCGGLPIMLQSNRCHLNKMSPYELVEHRE 185
Query: 99 EAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSS 158
E+ E GGYFI+NG+E++ R +I+ ++N+PM+++R SF +R Y+ + IR VR DQ+S
Sbjct: 186 ESDEFGGYFIVNGIEKLIRMLIVQRRNHPMAIIRPSFANRGASYSQYGIQIRSVRPDQTS 245
Query: 159 VTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKG 218
T L+YL +G V F + EYL+PV ++L+AL DTND EIF+H+ G
Sbjct: 246 QTNVLHYLNDGQVTFRFSWRKNEYLIPVVMILRALCDTNDREIFDHVV----------GG 295
Query: 219 AVGSPLVSERVKIILAEVQDL--SLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIR 276
+ +++R++++L + +L R Q LQ++G+ F+ V + V + ++
Sbjct: 296 DTSNSFLTDRLELLLRGFKKRYPTLQNRKQTLQYLGDKFRVVFQASPDMTDLQVGQELLN 355
Query: 277 DYIFVHLNDNN-DKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEK 335
+ VHL +NN DKFN+L+FM++KL+SLV DNPD+ Q+QEILL G L + +KEK
Sbjct: 356 RIVLVHLGENNKDKFNMLLFMIRKLYSLVAGECSPDNPDAAQHQEILLGGFLYGMIVKEK 415
Query: 336 LEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQT 395
+E++L+ + IQ +I N G +F + + KV+ + ++ IG+ ++ L TG L +Q+
Sbjct: 416 IEEYLQNIRLQIQTDI-NRGLAINFKDQKYMNKVLMR-VNENIGSKLQYFLSTGNLVSQS 473
Query: 396 GLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTP 455
GLDLQQ +GYTV AE++NF RFIS FR VHRG+ FA L+TT+VRKLLPESWGF CPVHTP
Sbjct: 474 GLDLQQVSGYTVVAEKINFYRFISHFRMVHRGSFFAQLKTTTVRKLLPESWGFFCPVHTP 533
Query: 456 DGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPA 515
DG PCGLLNH++ C++++ D SK I +L +G+ P+ ++ +GP +
Sbjct: 534 DGSPCGLLNHLSHKCKIST------EQSDVSK----IPSILYSLGVTPA-AHVIAAGP-S 581
Query: 516 VLSVLLDGRVVGVIPSSEIEKVVAH-LRRLKVSAASV-IPDDLEVGYVPLSLGGAYPGLY 573
+ V LDG+++G S E KVVA LR KV + +P DLEVGYVP + G YPGL+
Sbjct: 582 MCCVQLDGKIIGWC-SHEQGKVVADTLRFWKVEGKTPGLPVDLEVGYVPPTTSGQYPGLF 640
Query: 574 LFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRNAFPATHEEI 632
LF + +RPVR + L E+ ++GPFEQV+M I P+ + +H E
Sbjct: 641 LFGGHSRMMRPVRYLPLDKED-----IVGPFEQVYMNIAVTPEEIENNVH-----SHVEF 690
Query: 633 HPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPI 692
PT +LS++ANLTP+SD NQSPRNMYQCQM KQTMG AL R+D KLY LQT QTPI
Sbjct: 691 SPTNILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGVALCHRSDNKLYRLQTGQTPI 750
Query: 693 VRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDL 752
V+ N Y YG+D +P GTNA+VAV++YTGYDM+DAMI+NKS+ +RG +G +Y+ E ++L
Sbjct: 751 VKANLYDDYGMDNFPNGTNAVVAVISYTGYDMDDAMIINKSADERGFGYGTMYKVEKVNL 810
Query: 753 SDDGNKVDRGQKLFRRNKDA--KSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRT 810
S + ++ D + F D K +D DGLP +G + G+P C+ +D T N +
Sbjct: 811 SMNRSRGDPITQHFGFGTDEWPKEWLEKLDDDGLPLIGTYVEEGDPICAYFDDTLNKTKI 870
Query: 811 NSRKGSESVFVDYVAVDMKNSKNLP--QKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLW 868
+ SE +++ V + S Q I++R R P IGDKFSSRHGQKGVCS+ W
Sbjct: 871 KTYHSSEPAYIEEVKLIGDESSKFQELQAITIKYRIRRTPQIGDKFSSRHGQKGVCSRKW 930
Query: 869 PDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
P IDMPFS TG++PD+IINPHAFPSRMTI M +ES+A K
Sbjct: 931 PTIDMPFS-ETGIQPDVIINPHAFPSRMTIGMFVESLAGK 969
>gi|391863557|gb|EIT72865.1| RNA polymerase I, second largest subunit [Aspergillus oryzae 3.042]
Length = 1237
Score = 712 bits (1837), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 393/903 (43%), Positives = 559/903 (61%), Gaps = 68/903 (7%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAG-SPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
CR+ +Y GKL A +E++ + VRE GQ P+M++T RCHL+ A +LV
Sbjct: 128 CRERHATYRGKLRARIEYRVNNGDWMEAVRE---LGQVPIMMRTNRCHLEKATPAELVEH 184
Query: 97 KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQ 156
KEE+ E+GGYFI+NG E++ R +I+ K+N+PM++VR SF R YT V IR VR DQ
Sbjct: 185 KEESEELGGYFIVNGNEKLIRMLIVGKRNFPMAIVRGSFVKRGHTYTKFGVQIRSVRPDQ 244
Query: 157 SSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKE 216
+S T L+YL +G+V F + EYL+PV ++LKALV+TND EIF L +
Sbjct: 245 TSQTNVLHYLSDGNVTFRFSWRKNEYLVPVMMILKALVETNDREIFEGLVGSASSE---- 300
Query: 217 KGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIR 276
+ + V++RV+++L + +L +R C ++GE F+PV+ S +R
Sbjct: 301 --GINNTFVTDRVELLLRTYKGYNLHSRSACRAYLGEKFKPVLGVPMDMSNEEAGTEFLR 358
Query: 277 DYIFVHLNDNN-------DKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
+ HL + N DKF L++FM++KL++LV DNPD++ NQEILL G L
Sbjct: 359 KVVLPHLGNQNVTETQDYDKFKLIMFMIRKLYALVAGDCAPDNPDAVSNQEILLGGFLYG 418
Query: 330 IYLKEKLEDWLRKGKKLIQD-EIENNGKKFD--FFNLANIKKVMEKNPSKQIGTSIETML 386
+ LKE+LE+W+R +++D + N+G KF F + KV++++ ++ IG ++E L
Sbjct: 419 MILKERLEEWVRSFGPILRDWSMRNHGAKFTDPSFERDFLSKVVKRS-NENIGGALEYFL 477
Query: 387 KTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESW 446
TG L + TGLDLQQ +GYTV AE++NF RFIS FR +HRG+ FA L+TT+VRKLLPESW
Sbjct: 478 STGNLVSPTGLDLQQTSGYTVMAEKINFYRFISHFRMIHRGSFFAQLKTTTVRKLLPESW 537
Query: 447 GFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSIL-RVLIGVGMIPSL 505
GFLCPVHTPDG PCGLLNH+ C +++ S + S L R+L+ +G+
Sbjct: 538 GFLCPVHTPDGSPCGLLNHLAHKCLIST-----------SDIDVSHLPRLLVQLGVRSES 586
Query: 506 PKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSL 565
++ ++V LDGR+VG + + LR KV + +P +LE+GYVP S
Sbjct: 587 SVSLEE----SVTVQLDGRIVGFCSPKQARMIADTLRHWKVEGSHNVPRELEIGYVPNSN 642
Query: 566 GGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRNA 624
GG YPG+Y+F+ + R V+ + L ++ +GPFEQ FMEI C P G
Sbjct: 643 GGQYPGIYMFSQAARMYREVKYLPL-----DKLDYVGPFEQPFMEIACLPSDLVAG---- 693
Query: 625 FPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYH 684
+TH E PT +LS+VAN+TP+SD+NQSPRNMYQCQM+KQTMG A+ +R D KLY
Sbjct: 694 -ISTHIEFTPTNILSIVANMTPFSDYNQSPRNMYQCQMSKQTMGTPGTAIDYRTDNKLYR 752
Query: 685 LQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQI 744
LQT QTPIVR Y YG+D +P GTNA+VA+++YTGYDM+DAMI+NKSS +RG HG I
Sbjct: 753 LQTGQTPIVRPPLYNAYGLDNFPNGTNAVVAIISYTGYDMDDAMIINKSSHERGFGHGTI 812
Query: 745 YQTETIDLSDDGNKVDRGQ----KLFRRNKDAK---SLHSVIDSDGLPYVGQMIHPGE-- 795
Y+T+ L + ++ ++ + KLF + + ID DGLP++G + G
Sbjct: 813 YKTKVHSLDEKESRRNKSRREITKLFGFAPGGEIRAEWRNTIDEDGLPHIGARVKEGSLV 872
Query: 796 -PYCSI-YDKTTNSW-------RTNSRKGSESVFVDYVAVDMKNSKNLP-QKANIRFRHT 845
Y ++ YD ++S+ K +E ++D + + + P Q ++++R
Sbjct: 873 AAYHNVRYDAASDSYVNVDGITHFVKYKDAEEGYIDSIRIMGAETGIEPCQSLSVKYRIP 932
Query: 846 RNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESV 905
R P+IGDKFSSRHGQKGVCSQLWP +DMPFS +G++PDLIINPHAFPSRMTI ++ES+
Sbjct: 933 RKPVIGDKFSSRHGQKGVCSQLWPAVDMPFS-ESGIQPDLIINPHAFPSRMTIDQMIESM 991
Query: 906 AAK 908
A K
Sbjct: 992 AGK 994
>gi|260946741|ref|XP_002617668.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
gi|238849522|gb|EEQ38986.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
Length = 1232
Score = 712 bits (1837), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/883 (43%), Positives = 545/883 (61%), Gaps = 58/883 (6%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR+ +Y GKL+ V + D V E + GQ P+MLK+ RCHL+ +LV+ K
Sbjct: 171 CRERMSTYRGKLLMKVVWSVNDGEE--VSEVRDGGQVPIMLKSNRCHLEKLSPDELVAQK 228
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
EE+ E+GGYFI+NG+E++ R +I+ ++N+PM+++R SF +R YT V IRCVR DQ+
Sbjct: 229 EESDELGGYFIVNGIEKLVRMLIVQRRNHPMALIRPSFGNRGASYTKFGVQIRCVRPDQT 288
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
S T L+YL +G+V F + EYL+PV +VLKALV+TND EIF+ +
Sbjct: 289 SQTNVLHYLKDGNVTFRFSWRKNEYLVPVVMVLKALVETNDREIFDGIVAA--------- 339
Query: 218 GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRD 277
+ +++R++++L + +L ++ L ++G+ F+ S V V++
Sbjct: 340 -DTSNSFLTDRLELLLRTYKQYNLHSQKSTLAYLGDKFRVAFGATPDVSDIDVGREVLKR 398
Query: 278 YIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLE 337
+ VHL DN DKF LL+F ++KL++LV DNPD+ Q+QE+LL G L + +KEK+E
Sbjct: 399 IVLVHLPDNADKFRLLLFSIRKLYTLVAGDCAPDNPDATQHQEVLLGGFLYGMIIKEKIE 458
Query: 338 DWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGL 397
++L+ K I +I G + +F + + +V + ++ IG ++ L TG L +Q+GL
Sbjct: 459 EYLQNIKMQISSDI-GRGVRVNFNDRKYMSRVFMRT-NENIGQKLQYFLSTGNLVSQSGL 516
Query: 398 DLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDG 457
DLQQ +GYTV AE++NF RFIS FR VHRG+ FA L+TT+VRKLLPESWGFLCPVHTPDG
Sbjct: 517 DLQQVSGYTVVAEKINFYRFISHFRMVHRGSFFAELKTTTVRKLLPESWGFLCPVHTPDG 576
Query: 458 EPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVL 517
PCGLLNH+ C++A+ D S + ++ R +GV P + P +
Sbjct: 577 SPCGLLNHLAHKCQIAT------KASDVSAVPAALAR--LGVS-----PAHTFAAGPGLC 623
Query: 518 SVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTS 577
V LDG++VG + V LR KV +P DLE+GYVP S G YPGLYLF
Sbjct: 624 CVHLDGKIVGWTSHEQGRIVADSLRLWKVQGLHNLPKDLEIGYVPPSSKGQYPGLYLFGG 683
Query: 578 PPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPA-------THE 630
+ +RP + + L E+ ++GPFEQV+M I PA TH
Sbjct: 684 HSRMMRPAKYLPLDKED-----ILGPFEQVYMNIAVT-----------PAEIEENVHTHV 727
Query: 631 EIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQT 690
E PT +LS++ANLTP+SD NQSPRNMYQCQM KQTMG AL R+D KLY LQT QT
Sbjct: 728 EFAPTNILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGVALVHRSDNKLYRLQTGQT 787
Query: 691 PIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETI 750
PIV+ N Y YG+D +P G NA+VAV++YTGYDM+DAMI+NKS+ +RG +G +Y+ E +
Sbjct: 788 PIVKANLYDDYGMDNFPNGMNAVVAVISYTGYDMDDAMIINKSADERGFGYGTVYKVEKV 847
Query: 751 DLSDDGNKVDRGQKLFRRNKDA--KSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSW 808
DLS + D + F D ++ +D DGLP +G + G+P + +D+T
Sbjct: 848 DLSLSRRRGDPITQHFGFGSDEWPETWKEKLDDDGLPLIGVKVEEGDPIVAYFDETLGKT 907
Query: 809 RTNSRKGSESVFVDYV---AVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCS 865
+ + SE +++ V A D +S+ Q+ I++R TR P+IGDKFSSRHGQKGVCS
Sbjct: 908 KIKTYHSSEPAYIEEVKLLADDTGDSEC--QQITIKYRVTRAPLIGDKFSSRHGQKGVCS 965
Query: 866 QLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
+ WP +DMP+S +G++PD+IINPHAFPSRMTI M +ES+A K
Sbjct: 966 RKWPTVDMPYSE-SGIQPDVIINPHAFPSRMTIGMFVESLAGK 1007
>gi|50425489|ref|XP_461338.1| DEHA2F22902p [Debaryomyces hansenii CBS767]
gi|49657007|emb|CAG89744.1| DEHA2F22902p [Debaryomyces hansenii CBS767]
Length = 1167
Score = 711 bits (1836), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/882 (43%), Positives = 546/882 (61%), Gaps = 56/882 (6%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR+ +Y +LM V + D V E GQ PVMLKT RCHL+ +LV K
Sbjct: 106 CRERMSTYRSRLMLKVTWSVNDGDE--VSEIREAGQVPVMLKTNRCHLEKLSPSELVDQK 163
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
EE+ EMGGYFI+NG+E++ R +I+ ++N+PM+++R SF +R YT + IRCVR DQ+
Sbjct: 164 EESDEMGGYFIVNGIEKLIRMLIVQRRNHPMAIIRPSFGNRGASYTKFGIQIRCVRPDQT 223
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
S T L+YL +G+V F + EYL+P ++LKAL++TND EIF+ +
Sbjct: 224 SQTNVLHYLNDGNVTFRFSWKKNEYLVPAMMILKALIETNDREIFDGII----------- 272
Query: 218 GA-VGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIR 276
GA + +++R++++L + +L ++ + L ++G+ F+ V S V + V++
Sbjct: 273 GADTSNSFLTDRLELLLRTYKQYNLYSKQETLAYLGDKFRIVFGSAPDVSDIEVGKEVLQ 332
Query: 277 DYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKL 336
+ VHL +N DKF +L+FM++KL+SLV DNPD+ Q+QE+LL G L + +KEK+
Sbjct: 333 RIVLVHLPNNLDKFRMLLFMIRKLYSLVAGDCCPDNPDATQHQEVLLGGFLYGMIIKEKI 392
Query: 337 EDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTG 396
+++L+ K IQ +I N G +F + + +V + ++ IG ++ L TG L +Q+G
Sbjct: 393 DEYLQNIKLQIQSDI-NRGIAINFNDRKYMSRVFLR-INENIGQKLQYFLSTGNLVSQSG 450
Query: 397 LDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPD 456
LDLQQ +GYTV AE++NF RFIS FR VHRG+ FA L+TT+VRKLLPESWGFLCPVHTPD
Sbjct: 451 LDLQQVSGYTVVAEKINFYRFISHFRMVHRGSFFAELKTTTVRKLLPESWGFLCPVHTPD 510
Query: 457 GEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAV 516
G PCGLLNH++ C++A+ + + +V + + + P + P +
Sbjct: 511 GSPCGLLNHLSHKCQIAT-------------EASDVSQVPVALAQLGVSPAHSFAAGPNL 557
Query: 517 LSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFT 576
V LDG+V+G + V LR KV +P DLEVGYVP S G YPGLYLF
Sbjct: 558 CCVQLDGKVMGWTTHEHGKIVADTLRYWKVEGNHGLPLDLEVGYVPPSTKGQYPGLYLFG 617
Query: 577 SPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPA-------TH 629
+ +RP + + L +++GPFEQV+M++ PA TH
Sbjct: 618 GHSRMMRPTKYLPL-----NKTDILGPFEQVYMDVAVT-----------PAEIENNIHTH 661
Query: 630 EEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQ 689
E PT +LS++ANLTP+SD NQSPRNMYQCQM KQTMG AL R+D KLY LQT Q
Sbjct: 662 VEFSPTNILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGVALNHRSDNKLYRLQTGQ 721
Query: 690 TPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTET 749
TPIV+ + Y YG+D +P G NA+VAV++YTGYDM+DAMI+NKS+ +RG +G +Y+ E
Sbjct: 722 TPIVKASLYDDYGMDNFPNGMNAVVAVISYTGYDMDDAMIINKSADERGFGYGTVYKVEK 781
Query: 750 IDLSDDGNKVDRGQKLFRRNKDA--KSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNS 807
+DLS + D + F D +S +D+DGLP +G + G+P + YD T
Sbjct: 782 VDLSQSRRRGDPITQHFGFGTDEWPESWREKLDADGLPLIGVKVDEGDPIVAYYDDTLGR 841
Query: 808 WRTNSRKGSESVFVDYVAVDMKNSKNLP-QKANIRFRHTRNPIIGDKFSSRHGQKGVCSQ 866
+ + +E +++ V + +S + Q+ I++R TR P+IGDKFSSRHGQKGVCS+
Sbjct: 842 TKVKTYHSTEPAYIEEVKLLGDDSGDQEGQQITIKYRITRQPLIGDKFSSRHGQKGVCSR 901
Query: 867 LWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
WP +DMPFS TG++PD+IINPHAFPSRMTI M +ES+A K
Sbjct: 902 KWPQVDMPFS-ETGIQPDVIINPHAFPSRMTIGMFVESLAGK 942
>gi|390601556|gb|EIN10950.1| DNA-directed RNA polymerase I polypeptide 2 [Punctularia
strigosozonata HHB-11173 SS5]
Length = 1227
Score = 711 bits (1834), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 393/887 (44%), Positives = 550/887 (62%), Gaps = 53/887 (5%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
R+ SY G++ + F D +PV + + G P+M+++ RC+L+ S +LV+
Sbjct: 128 ARERLTSYRGRMYIKLNFTLND--NPVRTIQKDCGLLPIMVRSVRCNLRSMSSAELVARH 185
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
EE E GGYFI+NG ER+ R +ILP++N+ +S+ R S+ +R YT AV IRCVR DQ+
Sbjct: 186 EEPEEFGGYFIINGNERLIRLLILPRRNHAISLFRPSWANRGPSYTPYAVQIRCVRPDQT 245
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
+ T L+YL NG+ L F + EY++PV ++LKALV +D EIF L C E
Sbjct: 246 AATNTLHYLQNGNAVLRFTWRKNEYVIPVMLILKALVGASDKEIFEGLAMCDYE------ 299
Query: 218 GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRD 277
+ +++R++++L + SL T QCL+++G+ F+ V+ + + + + +++
Sbjct: 300 ----NTFLTDRIEMLLRGFKTYSLYTGTQCLEYLGDKFRVVLGCPEDWTNSEIGDWLLKK 355
Query: 278 YIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLE 337
+ HL D DK+ +LIFML+KL+SLV + DNPDS Q+QE+LLPGHL + +KE+LE
Sbjct: 356 MVLAHLQDPRDKYRMLIFMLRKLYSLVSGSCAPDNPDSPQHQEVLLPGHLYGMIIKERLE 415
Query: 338 DWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGL 397
+ L + + I ++ DF + I KV+ + + IG + L TG L + TGL
Sbjct: 416 EVLAQIRSQIYADVRREDPSIDFTDDRYINKVLSR-VNFDIGAKMSNFLATGNLISPTGL 474
Query: 398 DLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDG 457
DLQQ +G+T+ AE+LN+ R+IS FR++HRGA FA L+TT+VRKLLPE+WGFLCPVHTPDG
Sbjct: 475 DLQQTSGFTIVAEKLNWQRYISHFRSIHRGAFFAELKTTTVRKLLPEAWGFLCPVHTPDG 534
Query: 458 EPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGV-GMI-PSLPKLVKSGPPA 515
PCGLLNH++ TCR+ + + + + L L+ GM P P L G A
Sbjct: 535 TPCGLLNHLSRTCRIVT-----------TPLPVAHLPALLAEHGMSHPFAPSLDGRGH-A 582
Query: 516 VLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLF 575
L V LDGRV+G + ++ LR K +P DLEVGYVP+S GG YPGLYLF
Sbjct: 583 NLCVQLDGRVIGWARPAVALQLAERLRIWKTEGLHNVPLDLEVGYVPISEGGQYPGLYLF 642
Query: 576 TSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRNAFPATHEEIHP 634
++ + +RPVR ++ + ++IG FEQV+M+I P+ + G ++H E P
Sbjct: 643 STRARMMRPVRYLA-----NGRDDMIGSFEQVYMDIAIKPEEIELG-----VSSHVEHAP 692
Query: 635 TGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVR 694
T LS++ANLTP+SD NQSPRN+YQCQM KQTMG A++ R D KLY LQ+ Q+P+VR
Sbjct: 693 TNFLSILANLTPFSDFNQSPRNIYQCQMGKQTMGTPSTAIRHRTDNKLYRLQSGQSPVVR 752
Query: 695 TNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSD 754
+ YG+D +P GTNA+VAV++YTGYDMEDAMILNKS+ +RG +G IY+++T+DL +
Sbjct: 753 PKLHNTYGMDSFPNGTNAVVAVISYTGYDMEDAMILNKSAHERGFAYGTIYKSQTVDLQE 812
Query: 755 D-GNKVDRGQKLFR--------RNKDAKSLHSV--IDSDGLPYVGQMIHPGEPYCSIYDK 803
G R K H V +D DGLP +G + G+P + D
Sbjct: 813 QHGASKSRTSPTLHFGIGDDVIVEAGTKQHHCVEFLDMDGLPRIGTRLSTGDPIAAYIDD 872
Query: 804 TTNSWRTNSRKGSESVFVDYVAV--DMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQK 861
TT+ R KG E +VD V + D L QK +I R R P+IGDKFSSRHGQK
Sbjct: 873 TTHRTRFVKYKGDEVAYVDEVRLLGDDAGDSEL-QKIHITLRIARAPVIGDKFSSRHGQK 931
Query: 862 GVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
GVCSQ WP IDMPFS +GM+PD+IINPHAFPSRMTI ML+ES+A K
Sbjct: 932 GVCSQKWPAIDMPFS-ESGMQPDVIINPHAFPSRMTIGMLVESMAGK 977
>gi|336374043|gb|EGO02381.1| hypothetical protein SERLA73DRAFT_86669 [Serpula lacrymans var.
lacrymans S7.3]
gi|336386962|gb|EGO28108.1| hypothetical protein SERLADRAFT_447311 [Serpula lacrymans var.
lacrymans S7.9]
Length = 1229
Score = 710 bits (1833), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 388/886 (43%), Positives = 550/886 (62%), Gaps = 51/886 (5%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
R+ SY G++ A V ++ + P + G PVM+++ RC+L+ S +LV
Sbjct: 130 ARERLTSYRGRMQAKVCWKLNNDTHPNQHVMRDCGLVPVMVRSVRCNLRSLSSAELVQHN 189
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
EE E GGYFI+NG ER+ R +ILP++N+ +S++R SF +R YT AV IRCVR DQS
Sbjct: 190 EEPEEFGGYFIINGNERLIRYLILPRRNHVISLIRPSFSNRGPSYTQYAVQIRCVRPDQS 249
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCC-YDEKYKKE 216
S T L+YL NGS L F + +EY++P+ ++LKALV +D EIF + YD +
Sbjct: 250 SATNSLHYLSNGSATLRFSWRKQEYVIPIMLILKALVGASDKEIFEGVMMQDYDNTF--- 306
Query: 217 KGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIR 276
+++RV+++L + +L T QCL+++G+ F+ V+ + + A+ +I+
Sbjct: 307 --------LTDRVELLLRSFKMYNLYTGDQCLEYLGDKFRVVLGMPEDWTNQALGVWLIQ 358
Query: 277 DYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKL 336
I VHL +KF +L+FML+KL+++V + SDNPDS Q+QE+LLPG L + +KE+L
Sbjct: 359 KMILVHLETPREKFRMLLFMLRKLYAVVSSSCCSDNPDSPQHQEVLLPGSLYGMIIKERL 418
Query: 337 EDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTG 396
E+ L + + I ++ DF + I K++ + + IG + L TG L + +G
Sbjct: 419 EEALNQVRNQIATDVRRAEPPPDFLDKRYITKIINR-VNWDIGAKMSNFLATGNLTSPSG 477
Query: 397 LDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPD 456
LDLQQ +G+T+ AE+LN+ R+IS FR +HRGA FA L+TT+VRKLLPE+WGFLCPVHTPD
Sbjct: 478 LDLQQASGFTIVAEKLNWQRYISHFRCIHRGAFFAELKTTTVRKLLPEAWGFLCPVHTPD 537
Query: 457 GEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTS-ILRVLIGVGMIPSLPKLVKSGPPA 515
G PCGLLNH++ TCR+ + S + + I +L+G GM + +
Sbjct: 538 GSPCGLLNHLSRTCRIVT-----------SPLAVAHIPALLVGHGMTRAFSSSIDG--RR 584
Query: 516 VLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLF 575
L V LDGRV+G + ++ HLR K +P DLE+GYVP S GG YPGL+LF
Sbjct: 585 NLCVQLDGRVIGWAKPAVARQLANHLRTWKTEGRHKVPLDLEIGYVPESKGGQYPGLFLF 644
Query: 576 TSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRNAFPATHEEIHP 634
+S + +RPV+ ++ ++ IGPFEQV+M I P+ + G ++H E P
Sbjct: 645 SSRARMMRPVKYLANGKDDQ-----IGPFEQVYMNIAVKPEEIEEG-----VSSHVEHAP 694
Query: 635 TGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVR 694
T LS++ANLTP+SD NQSPRN+YQCQM KQTMG ALK R D KLY LQT Q+P+VR
Sbjct: 695 TNFLSILANLTPFSDFNQSPRNIYQCQMGKQTMGTPSTALKHRTDNKLYKLQTGQSPVVR 754
Query: 695 TNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSD 754
+ Y +D +P GTNAIVAV++YTGYDMEDAMILNKS+ +RG +G +Y+++ +DL D
Sbjct: 755 PRLHNTYAMDSFPNGTNAIVAVISYTGYDMEDAMILNKSAHERGFGYGTVYKSQIVDLKD 814
Query: 755 --DGNKVDRGQKLFR------RNKDAKSLHSV---IDSDGLPYVGQMIHPGEPYCSIYDK 803
+K L R ++ H+ +D DGLPY+G + G+P + D
Sbjct: 815 MRGASKSTTAPTLHFGLGDDIRTEEGSRQHACCHFLDRDGLPYIGTKLDSGDPIAAYVDD 874
Query: 804 TTNSWRTNSRKGSESVFVDYVAVDMKNSKNLP-QKANIRFRHTRNPIIGDKFSSRHGQKG 862
TT + KG E VD V + ++ + QK +I R TR+P+IGDKFSSRHGQKG
Sbjct: 875 TTGRTKFVKYKGDEQALVDEVRLLGGDAGDTELQKLHITLRITRSPVIGDKFSSRHGQKG 934
Query: 863 VCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
VCSQ WP +DMPF+ +GM+PD+IINPHAFPSRMTI ML+ES+A K
Sbjct: 935 VCSQKWPAVDMPFT-ESGMQPDVIINPHAFPSRMTIGMLVESMAGK 979
>gi|50290705|ref|XP_447785.1| hypothetical protein [Candida glabrata CBS 138]
gi|49527096|emb|CAG60734.1| unnamed protein product [Candida glabrata]
Length = 1202
Score = 710 bits (1832), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 391/887 (44%), Positives = 547/887 (61%), Gaps = 58/887 (6%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
RQ SY GK++ +++ D G V E + G P+ML++ RCHL +LV K
Sbjct: 123 ARQRLTSYRGKILLKLKWSVND-GENVFSEVRDCGGLPIMLQSNRCHLNKMSPHELVQHK 181
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
EE+ E+GGYFI+NG+E++ R +I+ ++N+PM+++R SF +R Y+ + IR VR DQ+
Sbjct: 182 EESDELGGYFIINGIEKLIRMLIVQRRNHPMAIIRPSFANRGASYSQYGIQIRSVRPDQT 241
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
S T L+YL +G V F + EYL+PV +++KALVDT+D EIF+
Sbjct: 242 SQTNVLHYLNDGQVTFRFSWRKNEYLIPVVMIMKALVDTSDREIFD-------------- 287
Query: 218 GAVGS----PLVSERVKIILAEVQDL--SLTTRLQCLQHIGEHFQPVIDGLQSESYYAVA 271
G +GS +++R++++L + L R Q LQ++G+ F+ V +S Y V
Sbjct: 288 GIIGSNTNNSFLTDRLELLLRGFKKRYPQLKNRTQVLQYLGDKFRLVFQASPDKSDYEVG 347
Query: 272 ETVIRDYIFVHL--NDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
+ V+ + VHL N N DKF +L+FM++KL+SLV DNPD+ Q+QE+LL G L
Sbjct: 348 QEVLNRIVLVHLGSNGNMDKFRMLLFMVRKLYSLVAGECCPDNPDATQHQEVLLGGFLYG 407
Query: 330 IYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEK---NPSKQIGTSIETML 386
+ LKEK++++L+ ++ +I N G +F N KK M + + IG+ ++ L
Sbjct: 408 MILKEKIDEYLQGIVAQVRTDI-NRGVAINF----NEKKYMSRVLMRVNDNIGSKMQYFL 462
Query: 387 KTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESW 446
TG L +Q+GLDLQQ +GYTV AE++NF RFIS FR VHRG+ FA L+TT+VRKLLPESW
Sbjct: 463 STGNLVSQSGLDLQQVSGYTVVAEKINFYRFISHFRMVHRGSFFAQLKTTTVRKLLPESW 522
Query: 447 GFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLP 506
GFLCPVHTPDG PCGLLNH CR+++ D SK + +L +G+ P+
Sbjct: 523 GFLCPVHTPDGSPCGLLNHFAHKCRIST------TQSDVSK----VPELLYSLGVTPASH 572
Query: 507 KLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASV-IPDDLEVGYVPLSL 565
P++ V LDG+++G + + LR KV + +P DLE+GYVP S
Sbjct: 573 TFAAG--PSLCCVQLDGKIIGWTSHEQGRVIADTLRFWKVEGETPGLPKDLEIGYVPPSS 630
Query: 566 GGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAF 625
G YPGLY+F + +RPVR + L E+ ++GPFEQV+M I +
Sbjct: 631 KGQYPGLYIFGGHSRMMRPVRYLPLDKED-----IVGPFEQVYMNIAVTPQEIQNNIH-- 683
Query: 626 PATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHL 685
TH E PT +LS++ANLTP+SD NQSPRNMYQCQM KQTMG AL R+D KLY L
Sbjct: 684 --THVEFSPTNILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGVALCHRSDNKLYRL 741
Query: 686 QTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIY 745
QT QTPIV+ N Y YG+D +P GTNA+VAV++YTGYDM+DAMI+NKS+ +RG +G +Y
Sbjct: 742 QTGQTPIVKANLYDDYGMDNFPNGTNAVVAVISYTGYDMDDAMIINKSADERGFGYGTMY 801
Query: 746 QTETIDLSDDGNKVDRGQKLFRRNKDA--KSLHSVIDSDGLPYVGQMIHPGEPYCSIYDK 803
+ E +DLS + ++ D + F D K +D DGLPY+G + G+P C+ +D
Sbjct: 802 KVEKVDLSLNRSRGDPVTQHFGFGTDEWPKEWLDKLDEDGLPYIGTYVEEGDPICAYFDD 861
Query: 804 TTNSWRTNSRKGSESVFVDYVAV--DMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQK 861
T + + SE +++ V + D N Q +I++R R P IGDKFSSRHGQK
Sbjct: 862 TIGKTKIKTYHSSEPAYIEEVNLIGDESNKFQELQTVSIKYRIRRTPQIGDKFSSRHGQK 921
Query: 862 GVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
GVCS+ WP IDMPFS TG++PD+IINPHAFPSRMTI M +ES+A K
Sbjct: 922 GVCSRKWPTIDMPFS-ETGIQPDVIINPHAFPSRMTIGMFVESLAGK 967
>gi|344233049|gb|EGV64922.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Candida tenuis ATCC 10573]
Length = 1166
Score = 709 bits (1831), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 383/882 (43%), Positives = 549/882 (62%), Gaps = 56/882 (6%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR+ ISY KL V + D + E + G PVML++ RCHLQ +LV K
Sbjct: 107 CRERMISYRSKLRLKVTWSVNDGEE--MSEIRDCGLLPVMLRSSRCHLQNLSPDELVKHK 164
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
EE+ E GGYFI+NG+E++ R +I+ ++N+PM+++R SF R YT + IRCVR DQ+
Sbjct: 165 EESDEFGGYFIVNGIEKLIRMLIVQRRNHPMALIRPSFASRGNSYTKYGIQIRCVRPDQT 224
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
S T L+YL +G+V F + EYL+PV ++LKAL++T+D EIF+
Sbjct: 225 SQTNVLHYLSDGNVTFRFSWKKNEYLVPVQMILKALMETSDREIFD-------------- 270
Query: 218 GAVGSPL----VSERVKIILAEV-QDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAE 272
G +G+ L +++R++++L + +L + + L ++G+ F+ V DG S V +
Sbjct: 271 GIIGTDLSNSFLTDRLELLLRTYNKSYNLYSNQETLAYLGDKFRVVFDGTPDMSDIEVGK 330
Query: 273 TVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYL 332
V++ + VHL+ N DKF +L+FM++KL+SLV DNPD+ Q+QE+LL G L + +
Sbjct: 331 LVLKRIVLVHLDSNQDKFRMLLFMIRKLYSLVAGDCCPDNPDATQHQEVLLGGFLYGMIV 390
Query: 333 KEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLA 392
KEK+E++L K + ++ N G K +F I +V ++ ++ IG ++ L TG L
Sbjct: 391 KEKIEEYLNNFKLQVSSDL-NRGLKVNFHERKYISRVFQR-INENIGQKLQYFLSTGNLV 448
Query: 393 TQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPV 452
+Q+GLDLQQ +GYTV AE++NF RFIS FR VHRG+ FA L+TT+VRKLLPESWGFLCPV
Sbjct: 449 SQSGLDLQQVSGYTVVAEKINFHRFISHFRMVHRGSFFAELKTTTVRKLLPESWGFLCPV 508
Query: 453 HTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSG 512
HTPDG PCGLLNH+ C++ + D S + ++ + +G+ + S +
Sbjct: 509 HTPDGSPCGLLNHLAHKCKITT------KQSDVSGVPGALSQ--LGISSVNSF-----AA 555
Query: 513 PPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGL 572
P V V LDG+++G + + V LR K+ + IP DLEVGYVP S G YPGL
Sbjct: 556 GPGVCCVQLDGKILGWTSHEKAKIVADTLRYWKIEGSHNIPLDLEVGYVPPSNKGQYPGL 615
Query: 573 YLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRNAFPATHEE 631
YLF + VRPV+ + L +++GPFEQV+M I P+ +H E
Sbjct: 616 YLFGGHARMVRPVKYLPL-----GKTDIVGPFEQVYMNIAVTPE-----EITNNIHSHVE 665
Query: 632 IHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTP 691
PT +LS++ANLTP+SD NQSPRNMYQCQM KQTMG L R+D KLY LQ+ QTP
Sbjct: 666 FSPTNILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGVGLVHRSDNKLYRLQSGQTP 725
Query: 692 IVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETID 751
IV+ N Y YG+D +P GTNA+VAV++YTGYDM+DAMI+NKS+ +RG +G +Y+ E +D
Sbjct: 726 IVKANLYDDYGMDNFPNGTNAVVAVISYTGYDMDDAMIINKSADERGFGYGTVYKVEKVD 785
Query: 752 LSDDGNKVDRGQKL-----FRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTN 806
L G RG + F + + + +D+DGLP +G + G+P + +D T
Sbjct: 786 L---GMSRRRGDPITQHIGFGDDDWPEIWQNKLDADGLPQIGVKVEEGDPIIAYFDDTLG 842
Query: 807 SWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQ 866
+ + SE +++ V + ++ + Q+ +I++R TR P+IGDKFSSRHGQKGVCS+
Sbjct: 843 KTKVKTYHSSEPAYIEEVKLLADDTNSECQQLSIKYRITRQPLIGDKFSSRHGQKGVCSR 902
Query: 867 LWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
WP DMPFS TG++PD+IINPHAFPSRMTI M +ES+A K
Sbjct: 903 KWPQTDMPFS-ETGIQPDVIINPHAFPSRMTIGMFVESLAGK 943
>gi|380495062|emb|CCF32685.1| DNA-directed RNA polymerase I subunit RPA2 [Colletotrichum
higginsianum]
Length = 1225
Score = 709 bits (1830), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 388/901 (43%), Positives = 551/901 (61%), Gaps = 66/901 (7%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSP--VVRERFNFGQFPVMLKTRRCHLQGADSQKLVS 95
CR+ +Y G+L A E++ ++ G P VRE GQ P+M+K+ RCHL+G +LV
Sbjct: 117 CRERHCTYRGRLSATFEYR-INNGDPKEFVRE---LGQVPIMVKSNRCHLEGNSPAQLVQ 172
Query: 96 LKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKD 155
KEE+ E+GGYFI+NG+E++ R + + ++N+PM++ R SF++R +GYT +++R VR D
Sbjct: 173 RKEESEELGGYFIVNGIEKIIRMLQVNRRNFPMAINRPSFQNRGQGYTPYGIILRSVRPD 232
Query: 156 QSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKK 215
++S T L+YL +G++ F + EYL+PV ++LKALV+TND EIF L K K
Sbjct: 233 ETSQTNVLHYLSDGNMTFRFSWRKNEYLVPVMMILKALVETNDREIFEGLIGLSGSKSAK 292
Query: 216 EKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVI 275
+ +++RV+++L + L ++ + ++GE F+ V+ + S Y V +
Sbjct: 293 ------NTFLTDRVELLLRTYKSYGLYSKTETRAYLGEKFRVVLGVPDTMSNYDVGTEFL 346
Query: 276 RDYIFVHLN-------DNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLI 328
R + VHL ++NDKF +L+FM++KL++LV DNPD++QNQE+LL G L
Sbjct: 347 RKIVLVHLGNINVTEKEDNDKFRMLLFMIRKLYALVAGDCSVDNPDAVQNQEVLLGGFLY 406
Query: 329 TIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKV---MEKNPSKQIGTSIETM 385
+ LKE+LE++L +L E F + K+ + ++ ++ IG +E
Sbjct: 407 GMILKERLEEFLTTAVRLSLREWTRKHPATPFTSQDFAKEFPANIFRHANENIGNGLEYF 466
Query: 386 LKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPES 445
L TG L + +GLDLQQ AG+TV AE+LNFLRF+S FR +HRGA FA L+TT+VRKLLPES
Sbjct: 467 LSTGNLTSPSGLDLQQTAGFTVVAEKLNFLRFLSHFRMIHRGAFFAELKTTTVRKLLPES 526
Query: 446 WGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSL 505
WGF+CPVHTPDG PCGLLNH+ C++ + D SK+ G++ L
Sbjct: 527 WGFMCPVHTPDGSPCGLLNHLAHKCKIMT------EAVDASKI----------PGLVAEL 570
Query: 506 PKLVKSGPPAVLSV--LLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPL 563
+ S SV +LDGR+VG E ++ LR KV +P LEVGYVP
Sbjct: 571 GAVETSSAATDESVVVMLDGRIVGFCTPRESLRIADTLRYWKVEGTHGVPLQLEVGYVPP 630
Query: 564 SLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRN 623
S GG+YPG+YL ++P + VRPV+ + L E+ +GP EQ +M I +
Sbjct: 631 SNGGSYPGIYLASAPARMVRPVKYLPLDKED-----FVGPHEQPYMSIAVVEN----EIV 681
Query: 624 AFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLY 683
+ +TH E+ PT MLS++AN+TP+SD NQSPRNMYQCQM KQTMG AL++R D K+Y
Sbjct: 682 SGESTHVEVTPTNMLSILANMTPFSDFNQSPRNMYQCQMGKQTMGTPATALRYRTDNKMY 741
Query: 684 HLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQ 743
LQ+ QTP+VR+ + YG D +P G NA+VAV++YTGYDM+DAMILNKS+ +RG HG
Sbjct: 742 RLQSGQTPVVRSPLHNTYGFDNFPNGFNAVVAVISYTGYDMDDAMILNKSAHERGFGHGT 801
Query: 744 IYQTETIDLSDDG--NKVDRGQKLFRRNKDA---KSLHSVIDSDGLPYVGQMIHPGEPYC 798
IY+T+ I L D+ V KLF +D DGLPYVG+++ G+ C
Sbjct: 802 IYKTKKITLKDESRTRAVKNISKLFGFAPGGFVKGHYRGQLDEDGLPYVGRLVQEGDVLC 861
Query: 799 SIYDKTTN----------SWRTNSRKGSESVFVDYVAVDMKNSKNLP-QKANIRFRHTRN 847
+ + + + K SE+ FV+ V V + N P Q +I+ R R+
Sbjct: 862 AWHTVSADYSGKLINLDGQTHYEKYKESETAFVEEVRVIGSETGNEPAQTISIKLRVPRS 921
Query: 848 PIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAA 907
P+IGDKFSSRHGQKGV SQ WP +DMPFS +GM+PD+IINPHAFPSRMTI M +ES+A
Sbjct: 922 PVIGDKFSSRHGQKGVASQKWPAVDMPFS-ESGMQPDVIINPHAFPSRMTIGMFVESLAG 980
Query: 908 K 908
K
Sbjct: 981 K 981
>gi|367052829|ref|XP_003656793.1| hypothetical protein THITE_2121926 [Thielavia terrestris NRRL 8126]
gi|347004058|gb|AEO70457.1| hypothetical protein THITE_2121926 [Thielavia terrestris NRRL 8126]
Length = 1236
Score = 708 bits (1828), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 391/908 (43%), Positives = 550/908 (60%), Gaps = 79/908 (8%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR+ ++Y GKL A E++ D G P+ R GQ P+M+K+ +CHL+ LV K
Sbjct: 119 CRERHVTYRGKLTAVFEYRIND-GEPMEFSR-ELGQMPIMVKSNKCHLENNPPALLVQRK 176
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
EE+ E+GGYFI+NG+E++ R +++ K+N+P+++ R SF +R YT +++R VR D++
Sbjct: 177 EESEELGGYFIVNGIEKIIRLLLVNKRNFPLAITRPSFTNRGPSYTPYGIIVRSVRPDET 236
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
S T L+YL +G+V F + EYL+PV ++LKALV+TND EIF L + K
Sbjct: 237 SQTNVLHYLNDGNVTFRFSWRKNEYLVPVMMILKALVETNDREIFEGLVGPPNSK----- 291
Query: 218 GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRD 277
+ + +++RV+++L + L T+ Q ++GE F+ V+ + S Y V +R
Sbjct: 292 -GIENTFLTDRVELLLRTYKTYGLYTKTQTRAYLGEKFRVVLGVPDTMSDYEVGTEFLRK 350
Query: 278 YIFVHLN-------DNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITI 330
+ VHL + DKF +L+FM +KL++LV DNPD++QNQEILL G L +
Sbjct: 351 IVLVHLGCVDVTEEQDLDKFKMLLFMCRKLYALVAGDCAIDNPDAVQNQEILLGGFLYGM 410
Query: 331 YLKEKLEDWLRKGKKLIQDEIENNGKKFDF--------FNLANIKKVMEKNPSKQIGTSI 382
LKEKL+++L + + N F F +A +K E IG ++
Sbjct: 411 ILKEKLDEFLSVSVRGALRDYLRNHATVSFTSPTFQRDFPVAIFRKANE-----NIGNAL 465
Query: 383 ETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLL 442
E L TG L + +GLDLQQ +G+TV AE+LNFLRFIS FR VHRG+ FA L+TT+VR+LL
Sbjct: 466 EYFLSTGNLQSPSGLDLQQTSGFTVVAEKLNFLRFISHFRMVHRGSFFAQLKTTTVRRLL 525
Query: 443 PESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSI-LRVLIGVGM 501
PESWGFLCPVHTPDG PCGLLNH+ C++ M S+ + + GV M
Sbjct: 526 PESWGFLCPVHTPDGAPCGLLNHLAHKCKI---------------MTDSLDVSAVPGVAM 570
Query: 502 IPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYV 561
+ + + V+LDGR++G + V LRR KV IP LE+GYV
Sbjct: 571 ELGVNDYSSAATSESVVVMLDGRIIGWCTPRAAKGVADSLRRWKVEGGHGIPVQLEIGYV 630
Query: 562 PLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDG----G 617
P S GG+YPG+Y+ + P + VRPV+ ++L E+ +GP EQ +M I C + G
Sbjct: 631 PPSRGGSYPGIYMSSRPARMVRPVKYLALGKED-----FVGPHEQPYMSIACTEAEVIPG 685
Query: 618 DGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFR 677
D +TH E PT +LS++AN+TP+SD NQSPRNMYQCQM KQTMG AL++R
Sbjct: 686 D--------STHVEFDPTNILSILANMTPFSDFNQSPRNMYQCQMGKQTMGTPGTALRYR 737
Query: 678 ADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDR 737
D K Y LQT QTPIVR+ + YG D +P GTNA+VAV++YTGYDM+DAMI+NKS+ +R
Sbjct: 738 TDNKTYRLQTGQTPIVRSPLHNTYGFDNFPNGTNAVVAVISYTGYDMDDAMIINKSAHER 797
Query: 738 GMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDA------KSLHSVIDSDGLPYVGQMI 791
G HG IY+T+ I L DD + + + + A S ++D DGLPYVG+++
Sbjct: 798 GFGHGTIYKTKKISLKDDDTRARSSKAIVKMFGFAPGSAVRASDREMLDEDGLPYVGRLV 857
Query: 792 HPGEPYCSIYDKTTN-SWRTNSRKG---------SESVFVDYVAVDMKNSKNLP-QKANI 840
G+ + + + + S + +R G SE FV+ V V ++ N P Q +I
Sbjct: 858 RQGDILYAWHTVSADYSGQLINRDGITHWERYKDSEDAFVEEVRVIGSDTGNEPLQTVSI 917
Query: 841 RFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAM 900
+ R R+P+IGDKFSSRHGQKGVCSQ WP IDMPFS +G++PD+IINPHAFPSRMTI M
Sbjct: 918 KLRVPRSPVIGDKFSSRHGQKGVCSQKWPAIDMPFS-ESGIQPDVIINPHAFPSRMTIGM 976
Query: 901 LLESVAAK 908
+ES+A K
Sbjct: 977 FVESLAGK 984
>gi|430813529|emb|CCJ29126.1| unnamed protein product [Pneumocystis jirovecii]
Length = 1198
Score = 708 bits (1828), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/871 (42%), Positives = 551/871 (63%), Gaps = 44/871 (5%)
Query: 44 SYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEM 103
+Y +L+ V + G + + FGQ P+M+K+ RCH++ L+ +EE+ E+
Sbjct: 115 TYKARLLLKVAWSV--NGEQEITDIKEFGQIPIMVKSNRCHIEKLSPADLIKSREESEEL 172
Query: 104 GGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSSVTLKL 163
GGYFI+NG E++ R +I+P++NY M++VRSSF ++ YT IRCVR D++S T L
Sbjct: 173 GGYFIVNGNEKIIRMLIIPRRNYVMALVRSSFLNKGTHYTKFGTQIRCVRPDETSHTNTL 232
Query: 164 YYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSP 223
+YL +G+ F + EYL+PV ++LKAL++TND EIF+ + K KK+
Sbjct: 233 HYLSDGNCIFRFSWRKNEYLVPVVMILKALINTNDKEIFDSIV----GKDKKD------T 282
Query: 224 LVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHL 283
++ + V+I+L ++ L + Q LQ++GE F+ V++ + ++ V + +++ + VHL
Sbjct: 283 ILVDHVEILLRTYKNYELYNQKQTLQYLGEKFRVVLNVDEDLTHERVGQELLKKIVLVHL 342
Query: 284 NDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKG 343
++N DKF +LIFM++KL+SLV DNPDS QNQEILL G L + +KEK+ED+L
Sbjct: 343 DNNYDKFRMLIFMIRKLYSLVFGQCCPDNPDSAQNQEILLGGFLYGMIIKEKIEDYLLSL 402
Query: 344 KKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRA 403
+ + ++ +FF+ I K+ ++ P+ IG+ ++ L TG L + TGLDLQQ
Sbjct: 403 RNTVIQDLRKPNNSVNFFDKKYISKLFQRVPN-DIGSKLQYFLSTGNLVSSTGLDLQQTT 461
Query: 404 GYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLL 463
G+T+ AE+LNF R++S FR VHRGA FA +++ +VRKLLPE+WGF+CPVHTPDG PCGLL
Sbjct: 462 GFTIIAEKLNFYRYLSHFRTVHRGAFFADVKSVTVRKLLPEAWGFICPVHTPDGAPCGLL 521
Query: 464 NHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDG 523
NH+TS C++ + S N+ SI +L+ +G+ P+ L +V L+G
Sbjct: 522 NHLTSKCKIVT---SNINV-------DSIPYLLVKLGVDPTSNML----GTEYSTVQLNG 567
Query: 524 RVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVR 583
+++G ++ LR K + IP +LE+G +P S GG Y GLY+F+S + +R
Sbjct: 568 KIIGYCMHEVASRIAHLLRYWKTEKSHNIPLELEIGLIPKSEGGQYHGLYIFSSKSRMIR 627
Query: 584 PVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVAN 643
PV+ + L E+ +G FEQV++ I G + +H EI+ + M S++A+
Sbjct: 628 PVKYLPLNKED-----FVGSFEQVYLNISLGSHFSKGVDTQY--SHSEINTSNMFSILAS 680
Query: 644 LTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGI 703
LTP+SD NQSPRNMYQCQMAKQTMG +L++R D KLY LQT QTPIVR+ TY YG+
Sbjct: 681 LTPFSDFNQSPRNMYQCQMAKQTMGTPASSLRYRTDNKLYLLQTGQTPIVRSKTYDLYGL 740
Query: 704 DEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQ 763
D +P GTNAIVAV++YTGYDMEDA+++NKSS +RG + IY++E +DL G K +G+
Sbjct: 741 DNFPNGTNAIVAVISYTGYDMEDALVINKSSYERGFAYATIYKSEKVDL---GQKRKKGE 797
Query: 764 KL-----FRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSES 818
++ F +K +D+DGLP +G + G+P + +++TT G+E
Sbjct: 798 QIIYHFGFGNDKLHPKWLEKLDADGLPMIGVKLEEGDPLAAYFNETTGKTIIQEYHGTED 857
Query: 819 VFVDYVAVDMKNSKNLP-QKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSG 877
VFV+ V + +S ++ Q +I+ R R IGDKFSSRHGQKGVCSQ WP DMPFS
Sbjct: 858 VFVEEVRLLGNDSGDMECQCIHIKLRIARPITIGDKFSSRHGQKGVCSQKWPAADMPFSE 917
Query: 878 VTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
+G++PD+IINPHAFPSRMTI M +ES+A K
Sbjct: 918 -SGIQPDIIINPHAFPSRMTIGMFIESMAGK 947
>gi|242777481|ref|XP_002479042.1| DNA-directed RNA polymerase I subunit beta (Rpa2), putative
[Talaromyces stipitatus ATCC 10500]
gi|218722661|gb|EED22079.1| DNA-directed RNA polymerase I subunit beta (Rpa2), putative
[Talaromyces stipitatus ATCC 10500]
Length = 1264
Score = 707 bits (1824), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 389/902 (43%), Positives = 556/902 (61%), Gaps = 66/902 (7%)
Query: 38 CRQAKISYTGKLMADVEFQYLDA-GSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
CR+ +Y G+L A +++Q + VRE GQ P+ML++ RCHL+ Q+LV
Sbjct: 135 CRERHATYRGRLRARLQYQVNNGEWHESVRE---LGQVPLMLRSNRCHLESFSPQQLVDH 191
Query: 97 KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQ 156
KEE+ E+GGYFI+NG E++ R +I+PK+N+PM++ R SF+ R G+T V IR R DQ
Sbjct: 192 KEESEELGGYFIVNGNEKLIRMLIMPKRNFPMAINRPSFQKRGAGFTTFGVQIRSARPDQ 251
Query: 157 SSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKE 216
++ T L+YL +G+V F + +EYL+PV ++LKALV+TND EIF + K
Sbjct: 252 TTQTNVLHYLSDGNVTFRFSWRKQEYLVPVMMILKALVETNDREIFEGIVGNASTK---- 307
Query: 217 KGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIR 276
+ V++RV+++L + + +R ++G+ F+PV+ + ++ +R
Sbjct: 308 --GPANTFVTDRVELLLRTFKGYKIYSRSDARAYLGKKFRPVLFAPATWTHEECGAEFLR 365
Query: 277 DYIFVHLNDNN-------DKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
+ HL + N DKF L++FM++KL++ V +DNPD++ NQE++L G++
Sbjct: 366 KIVLPHLGNQNVTTTQDYDKFKLMLFMIRKLYAFVAGDCAADNPDAISNQEVMLGGYVYG 425
Query: 330 IYLKEKLEDWLRKGKKLIQDEIENNGK-KFD--FFNLANIKKVMEKNPSKQIGTSIETML 386
+ LKE+LE+WL +L++D G KF F I KV+++ ++ IG ++E L
Sbjct: 426 MLLKERLEEWLLSFGRLVRDWSYRGGNLKFTDPSFEKDFIGKVIKRT-NENIGGALEYFL 484
Query: 387 KTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESW 446
TG L + TGLD+QQ +G+TV AE++NF RFI+ FR VHRG FA L+TT+VRKLLPESW
Sbjct: 485 STGNLVSPTGLDMQQASGFTVVAEKINFYRFIAHFRMVHRGTFFAQLKTTAVRKLLPESW 544
Query: 447 GFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTS-ILRVLIGVGMIPSL 505
GF+CPVHTPDG PCGLLNH+ C +A+ S + S I RVL +G+
Sbjct: 545 GFMCPVHTPDGSPCGLLNHLAHKCLIAT-----------SDLDVSHIPRVLAQLGIKSEA 593
Query: 506 PKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSL 565
V + V L+GRVVG + + + LR KV + IP +LE+GYVP S
Sbjct: 594 SAEVTES----VCVQLNGRVVGYCSPKQAKMIHDTLRFWKVEGSHDIPKELEIGYVPTSN 649
Query: 566 GGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAF 625
GG YPG+Y+ + P + RPV+ ++L ++ +GPFEQ FMEI C + R+
Sbjct: 650 GGQYPGIYMSSQPARMYRPVKYLAL-----DKLDYVGPFEQPFMEIACLEEDI---RSGL 701
Query: 626 PATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHL 685
+TH E PT +LS++AN+TP+SD+NQSPRNMYQCQM+KQTMG + +R D KLY L
Sbjct: 702 -STHIEFTPTNILSIIANMTPFSDNNQSPRNMYQCQMSKQTMGTPGTSFAYRTDNKLYRL 760
Query: 686 QTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIY 745
QT QTPIVR Y YG+D +P G NA+VA+LAYTGYDM+DAM++NKSS +RG HG IY
Sbjct: 761 QTGQTPIVRPPLYNAYGLDNFPNGANAVVAILAYTGYDMDDAMVINKSSHERGFGHGTIY 820
Query: 746 QTETIDLSDDGNKVDRGQ----KLFRRNKDAK---SLHSVIDSDGLPYVGQMIHPGE--- 795
+T+ +L D ++ ++ + KLF ++ + +D DGLP+ G I G
Sbjct: 821 KTKFYNLDDKDSRRNKSKREISKLFGFAPGSEIKAEYRATLDEDGLPHPGAKIKEGSYVA 880
Query: 796 -PYCSIYDKTTNSW-------RTNSRKGSESVFVDYVAVDMKNSKNLP-QKANIRFRHTR 846
Y YD ++S+ K +E ++D V + + N P Q +++FR R
Sbjct: 881 AWYTVRYDAGSDSYINVDGITHFLKYKDAEEGYIDTVRLVGNENGNEPLQAISVKFRVPR 940
Query: 847 NPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVA 906
PIIGDKFSSRHGQKGVCSQLWP IDMPFS +G++PDLIINPHAFPSRMTIA ++ES+A
Sbjct: 941 RPIIGDKFSSRHGQKGVCSQLWPQIDMPFS-ESGIQPDLIINPHAFPSRMTIAQIIESMA 999
Query: 907 AK 908
K
Sbjct: 1000 GK 1001
>gi|426192462|gb|EKV42398.1| hypothetical protein AGABI2DRAFT_188567 [Agaricus bisporus var.
bisporus H97]
Length = 1219
Score = 707 bits (1824), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 387/883 (43%), Positives = 551/883 (62%), Gaps = 52/883 (5%)
Query: 39 RQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKE 98
R+ SY G++ ++ + DA + G P+M+++ RC+L+G S LV+ E
Sbjct: 125 RERLTSYRGRMT--LKICWTDAHGQKNETIKDCGLLPIMVRSVRCNLKGLSSAALVAKHE 182
Query: 99 EAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSS 158
E E GGYFI+NG ER+ R +ILP++N+ +S++R SF +R YT AV IRCVR DQ+S
Sbjct: 183 EPEEFGGYFIINGNERLIRYLILPRRNHVISLIRPSFANRGLSYTQYAVQIRCVRPDQTS 242
Query: 159 VTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKG 218
T L+YL NGS L F + +EY++P+ ++LKA+V +D EIF + Y+
Sbjct: 243 ATNTLHYLSNGSAMLRFSWRKQEYVIPIMLILKAMVGASDKEIFEGVIM---RDYENT-- 297
Query: 219 AVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDY 278
+++RV+++L + +L T QCL ++G+ F+ V++ + + A+ + +++
Sbjct: 298 -----FLTDRVELLLRSFKVFTLNTGEQCLDYLGDKFRVVLNLPEDWTNTAIGKWLVQKM 352
Query: 279 IFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLED 338
I VHL+ DKF +L+FML+KLF+LV + +DNPDS Q+QE+LLPG L + +KE++E+
Sbjct: 353 ILVHLDSPRDKFRMLLFMLRKLFALVSSSCCADNPDSPQHQEVLLPGTLYGMIIKERMEE 412
Query: 339 WLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLD 398
L + ++ N G DF + KV K + IG + L TG L + TGLD
Sbjct: 413 ILNNICNTVMLDVRN-GATVDFHDKRYFTKVTSK-VNFDIGARLANFLATGNLISPTGLD 470
Query: 399 LQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGE 458
LQQ +G+T+ AE+LN+ R+IS FR +HRGA FA L+TT+VRKLLPE+WGFLCPVHTPDG
Sbjct: 471 LQQASGFTIVAEKLNWQRYISHFRCIHRGAFFAELKTTTVRKLLPEAWGFLCPVHTPDGS 530
Query: 459 PCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIG-VGMIPSLPKLVKSGPPAVL 517
PCGLLNH++ TCR+ + S + + L L+G GM + +
Sbjct: 531 PCGLLNHLSRTCRIVT-----------SPLAVAHLPSLLGSCGMTQVFTPSING--QKNI 577
Query: 518 SVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTS 577
SV LDGR++G S ++ +LR K + +P DLE+G+VP S GG YPGL+LF +
Sbjct: 578 SVQLDGRIIGWAQPSVASQLAKNLRVWKTEGKNGVPLDLEIGFVPESDGGQYPGLFLFAN 637
Query: 578 PPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRNAFPATHEEIHPTG 636
+ +RPV+ LP+ + + IG FEQV+M + C P+ D +TH E +PT
Sbjct: 638 RSRMMRPVK--YLPNGKD---DQIGSFEQVYMNVACLPEEIDAN------STHVEHNPTN 686
Query: 637 MLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTN 696
LS++ANLTP+SD NQSPRN+YQCQM KQ+MG ALK R D KLY LQT Q+P+VR
Sbjct: 687 FLSILANLTPFSDFNQSPRNIYQCQMGKQSMGTPSTALKHRTDNKLYRLQTGQSPVVRPM 746
Query: 697 TYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSD-- 754
+ Y +D YP GTNAIVAV++YTGYDMEDAMILNKS+ +RG +G +Y+++ +DL D
Sbjct: 747 LHNTYAMDSYPNGTNAIVAVISYTGYDMEDAMILNKSAHERGFAYGTVYKSQIVDLKDMR 806
Query: 755 DGNKVDRGQKLF------RRNKDAKSLHSV--IDSDGLPYVGQMIHPGEPYCSIYDKTTN 806
NK L R + ++ H V +D DGLPY+G + G+P + D+T
Sbjct: 807 GANKSVTAPSLHFGLGPDVRLEGDRAHHCVDFLDLDGLPYIGTRLKAGDPIAAYIDETAG 866
Query: 807 SWRTNSRKGSESVFVDYVAVDMKNSKNLP-QKANIRFRHTRNPIIGDKFSSRHGQKGVCS 865
+ KG E +VD V + +S + QK ++ R TR+P+IGDKFSSRHGQKGVCS
Sbjct: 867 RTKFVKYKGDEMAYVDEVRLLASDSGDTELQKMHVTLRITRSPVIGDKFSSRHGQKGVCS 926
Query: 866 QLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
Q WP +DMPF+ +GM+PD+IINPHAFPSRMTI ML+ES+A K
Sbjct: 927 QKWPAVDMPFT-ESGMQPDVIINPHAFPSRMTIGMLVESMAGK 968
>gi|3668171|dbj|BAA33445.1| RNA polymerase I second-largest subunit [Neurospora crassa]
Length = 1234
Score = 706 bits (1823), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 391/906 (43%), Positives = 557/906 (61%), Gaps = 74/906 (8%)
Query: 37 HCRQAKISYTGKLMADVEFQYLDAGSP--VVRERFNFGQFPVMLKTRRCHLQGADSQKLV 94
CR+ +SY GKL A E++ D G P VRE GQ P+M+K+ +CHLQ +LV
Sbjct: 120 ECRERHVSYRGKLSATFEYRIND-GEPHEFVRE---LGQMPIMVKSNKCHLQNNSPAQLV 175
Query: 95 SLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRK 154
+ KEE+ E+GGYFI+NG+E++ R +++ ++N+P+++VR SF++R YT +++R VR
Sbjct: 176 ARKEESEELGGYFIVNGIEKLIRMLLVNRRNFPLAIVRPSFQNRGASYTPYGIIMRSVRP 235
Query: 155 DQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYK 214
D++S T L+YL +G+V F + EYL+PV +++KALV+TND EIF L K
Sbjct: 236 DETSQTNVLHYLSDGNVTFRFSWRKNEYLIPVMMIMKALVETNDREIFEGLVGPPQSK-- 293
Query: 215 KEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETV 274
A +P +++RV+++L + L ++ Q ++G+ F+ V+ + S Y V
Sbjct: 294 ----ASPTPSLTDRVELLLRTYKKYGLYSKTQTRAYLGQKFRVVLGVPDTMSDYEVGTEF 349
Query: 275 IRDYIFVHLNDNN-------DKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHL 327
+R + VHL + DKFN+L+FM +KL++LV DNPD++QNQEILL G L
Sbjct: 350 LRKIVLVHLGSQDVTEQQDADKFNMLLFMCRKLYALVAGDCAVDNPDAVQNQEILLGGFL 409
Query: 328 ITIYLKEKLEDWLRKG-KKLIQDEIENNGK---KFDFFNLANIKKVMEKNPSKQIGTSIE 383
+KE+LE+ L + ++D + N + D F L + + + ++ IG S+E
Sbjct: 410 YGQIIKERLEELLTVSFRASLRDYLRRNPTVSFQSDTF-LKDFPIAIFRRANENIGQSLE 468
Query: 384 TMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLP 443
L TG L + +GLDLQQ +G+TV AE+LNFLRFIS FR VHRG+ FA L+TT+VRKLLP
Sbjct: 469 YFLSTGNLVSPSGLDLQQVSGFTVVAEKLNFLRFISHFRMVHRGSFFAQLKTTTVRKLLP 528
Query: 444 ESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIP 503
ESWGFLCPVHTPDG PCGLLNH+ C++ + S ++I R+ +G++
Sbjct: 529 ESWGFLCPVHTPDGSPCGLLNHLAHKCKIMTE----------SVDASTISRLAFELGVV- 577
Query: 504 SLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPL 563
+ + + V+LDGR+VG E + + LR KV+ + +P LE+GYVP
Sbjct: 578 ---NISSAATSESVVVMLDGRIVGWCTPEECKSIAETLRYWKVNGENGVPLQLEIGYVPP 634
Query: 564 SLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRN 623
S GG+YPGLY+ + P + VRPV+ + L E+ +GP EQ +M I C + +
Sbjct: 635 SNGGSYPGLYMSSQPARMVRPVKYLPLQKED-----FVGPQEQPYMSIACTE------QE 683
Query: 624 AFP--ATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQK 681
P +TH E PT +LS++AN+TP+SD NQSPRNMYQCQM KQTMG AL R D K
Sbjct: 684 VIPGDSTHVEFDPTNILSILANMTPFSDFNQSPRNMYQCQMGKQTMGTPATALAHRTDNK 743
Query: 682 LYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCH 741
+Y LQT QTP+VR + YG D +P G NA+VAV++YTGYDM+DAMILNKS+ +RG H
Sbjct: 744 MYRLQTGQTPVVRAPLHNTYGFDNFPNGMNAVVAVISYTGYDMDDAMILNKSAHERGFGH 803
Query: 742 GQIYQTETIDLSDDGNKVDRGQ--KLFRRNKDA---KSLHSVIDSDGLPYVGQMIHPGEP 796
G IY+T+ + L DD K+F ++ +S ++D+DGLP VG+++ G+
Sbjct: 804 GSIYKTKKVSLKDDSRTRSAKSIVKMFGFAPNSTIRESTRDMLDNDGLPRVGRLLREGDV 863
Query: 797 YCSIY-------------DKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLP-QKANIRF 842
C+ + D T+ R K SE FV+ V V ++ P Q +I+
Sbjct: 864 ICAWHTVSADYNGQLVNRDGVTHYERY---KDSEDAFVEEVRVIGADNGTEPLQTVSIKL 920
Query: 843 RHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLL 902
R R+P+IGDKFSSRHGQKGV SQ WP DMPFS TG++PD+IINPHAFPSRMTI M +
Sbjct: 921 RIPRSPVIGDKFSSRHGQKGVLSQKWPATDMPFSE-TGIQPDVIINPHAFPSRMTIGMFV 979
Query: 903 ESVAAK 908
ES+A K
Sbjct: 980 ESLAGK 985
>gi|336465559|gb|EGO53799.1| DNA-directed RNA polymerase I subunit RPA2 [Neurospora tetrasperma
FGSC 2508]
gi|350295141|gb|EGZ76118.1| DNA-directed RNA polymerase I subunit RPA2 [Neurospora tetrasperma
FGSC 2509]
Length = 1234
Score = 706 bits (1823), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 390/906 (43%), Positives = 557/906 (61%), Gaps = 74/906 (8%)
Query: 37 HCRQAKISYTGKLMADVEFQYLDAGSP--VVRERFNFGQFPVMLKTRRCHLQGADSQKLV 94
CR+ +SY GKL A E++ ++ G P VRE GQ P+M+K+ +CHLQ +LV
Sbjct: 120 ECRERHVSYRGKLSATFEYR-INDGEPHEFVRE---LGQMPIMVKSNKCHLQNNSPAQLV 175
Query: 95 SLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRK 154
+ KEE+ E+GGYFI+NG+E++ R ++L ++N+P+++VR SF++R YT +++R VR
Sbjct: 176 ARKEESEELGGYFIVNGIEKLIRMLLLNRRNFPLAIVRPSFQNRGASYTPYGIIMRSVRP 235
Query: 155 DQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYK 214
D++S T L+YL +G+V F + EYL+PV +++KALV+TND EIF L K
Sbjct: 236 DETSQTNVLHYLSDGNVTFRFSWRKNEYLIPVMMIMKALVETNDREIFEGLVGPPQSK-- 293
Query: 215 KEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETV 274
V + +++RV+++L + L ++ Q ++G+ F+ V+ + S Y V
Sbjct: 294 ----GVANTFLTDRVELLLRTYKKYGLYSKTQTRAYLGQKFRVVLGVPDTMSDYEVGTEF 349
Query: 275 IRDYIFVHL-------NDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHL 327
+R + VHL + DKFN+L+FM +KL++LV DNPD++QNQEILL G L
Sbjct: 350 LRKIVLVHLGCQDVTEQQDADKFNMLLFMCRKLYALVAGDCAVDNPDAVQNQEILLGGFL 409
Query: 328 ITIYLKEKLEDWLRKG-KKLIQDEIENNGK---KFDFFNLANIKKVMEKNPSKQIGTSIE 383
+KE+LE+ L + ++D + N + D F L + + + ++ IG S+E
Sbjct: 410 YGQIIKERLEELLTVSFRASLRDYLRRNPTVSFQSDTF-LKDFPIAIFRRANENIGQSLE 468
Query: 384 TMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLP 443
L TG L + +GLDLQQ +G+TV AE+LNFLRFIS FR VHRG+ FA L+TT+VRKLLP
Sbjct: 469 YFLSTGNLVSPSGLDLQQVSGFTVVAEKLNFLRFISHFRMVHRGSFFAQLKTTTVRKLLP 528
Query: 444 ESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIP 503
ESWGFLCPVHTPDG PCGLLNH+ C++ + S ++I R+ +G++
Sbjct: 529 ESWGFLCPVHTPDGSPCGLLNHLAHKCKIMTE----------SVDASTIPRLAFELGVV- 577
Query: 504 SLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPL 563
+ + + V+LDGR+VG E + + LR KV+ + +P LE+GYVP
Sbjct: 578 ---NISSAATSESVVVMLDGRIVGWCTPEECKSIAETLRYWKVNGENGVPLQLEIGYVPP 634
Query: 564 SLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRN 623
S GG+YPGLY+ + P + VRPV+ + L E+ +GP EQ +M I C + +
Sbjct: 635 SNGGSYPGLYMSSQPARMVRPVKYLPLQKED-----FVGPQEQPYMSIACTE------QE 683
Query: 624 AFP--ATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQK 681
P +TH E PT +LS++AN+TP+SD NQSPRNMYQCQM KQTMG AL R D K
Sbjct: 684 VIPGDSTHVEFDPTNILSILANMTPFSDFNQSPRNMYQCQMGKQTMGTPATALAHRTDNK 743
Query: 682 LYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCH 741
+Y LQT QTP+VR + YG D +P G NA+VAV++YTGYDM+DAMILNKS+ +RG H
Sbjct: 744 MYRLQTGQTPVVRAPLHNTYGFDNFPNGMNAVVAVISYTGYDMDDAMILNKSAHERGFGH 803
Query: 742 GQIYQTETIDLSDDGNKVDRGQ--KLFRRNKDA---KSLHSVIDSDGLPYVGQMIHPGEP 796
G IY+T+ + L DD K+F ++ +S ++D+DGLP VG+++ G+
Sbjct: 804 GSIYKTKKVSLKDDSRTRSAKSIVKMFGFAPNSTIRESTRDMLDNDGLPRVGRLLREGDV 863
Query: 797 YCSIY-------------DKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLP-QKANIRF 842
C+ + D T+ R K SE FV+ V V ++ P Q +I+
Sbjct: 864 ICAWHTVSADYNGQLVNRDGVTHYERY---KDSEDAFVEEVRVIGADNGTEPLQTVSIKL 920
Query: 843 RHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLL 902
R R+P+IGDKFSSRHGQKGV SQ WP DMPFS TG++PD+IINPHAFPSRMTI M +
Sbjct: 921 RIPRSPVIGDKFSSRHGQKGVLSQKWPATDMPFSE-TGIQPDVIINPHAFPSRMTIGMFV 979
Query: 903 ESVAAK 908
ES+A K
Sbjct: 980 ESLAGK 985
>gi|409079585|gb|EKM79946.1| hypothetical protein AGABI1DRAFT_119994 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 1219
Score = 706 bits (1822), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 387/883 (43%), Positives = 550/883 (62%), Gaps = 52/883 (5%)
Query: 39 RQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKE 98
R+ SY G++ ++ + DA + G P+M+++ RC+L+G S LV+ E
Sbjct: 125 RERLTSYRGRMT--LKICWTDAHGQKNETIKDCGLLPIMVRSVRCNLKGLSSAALVAKHE 182
Query: 99 EAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSS 158
E E GGYFI+NG ER+ R +ILP++N+ +S++R SF +R YT AV IRCVR DQ+S
Sbjct: 183 EPEEFGGYFIINGNERLIRYLILPRRNHVISLIRPSFANRGLSYTQYAVQIRCVRPDQTS 242
Query: 159 VTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKG 218
T L+YL NGS L F + +EY++P+ ++LKA+V +D EIF + Y+
Sbjct: 243 ATNTLHYLSNGSAMLRFSWRKQEYVIPIMLILKAMVGASDKEIFEGVIM---RDYENT-- 297
Query: 219 AVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDY 278
+++RV+++L + +L T QCL ++G+ F+ V++ + + A+ + +++
Sbjct: 298 -----FLTDRVELLLRSFKVFTLNTGEQCLDYLGDKFRVVLNLPEDWTNTAIGKWLVQKM 352
Query: 279 IFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLED 338
I VHL+ DKF +L+FML+KLF+LV + +DNPDS Q+QE+LLPG L + +KE++E+
Sbjct: 353 ILVHLDSPRDKFRMLLFMLRKLFALVSSSCCADNPDSPQHQEVLLPGTLYGMIIKERMEE 412
Query: 339 WLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLD 398
L + ++ N G DF + KV K + IG + L TG L + TGLD
Sbjct: 413 ILNNICNTVMLDVRN-GATVDFHDKRYFTKVTSK-VNFDIGARLANFLATGNLISPTGLD 470
Query: 399 LQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGE 458
LQQ +G+T+ AE+LN+ R+IS FR +HRGA FA L+TT+VRKLLPE+WGFLCPVHTPDG
Sbjct: 471 LQQASGFTIVAEKLNWQRYISHFRCIHRGAFFAELKTTTVRKLLPEAWGFLCPVHTPDGS 530
Query: 459 PCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIG-VGMIPSLPKLVKSGPPAVL 517
PCGLLNH++ TCR+ + S + + L L+G GM + +
Sbjct: 531 PCGLLNHLSRTCRIVT-----------SPLAVAHLPSLLGSCGMTQVFTPSING--QKNI 577
Query: 518 SVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTS 577
SV LDGR++G S ++ +LR K + +P DLE+G+VP S GG YPGL+LF +
Sbjct: 578 SVQLDGRIIGWAQPSVASQLAKNLRVWKTEGKNGVPLDLEIGFVPESDGGQYPGLFLFAN 637
Query: 578 PPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRNAFPATHEEIHPTG 636
+ +RPV+ LP+ + I G FEQV+M + C P+ D +TH E +PT
Sbjct: 638 RSRMMRPVK--YLPNGKDDQI---GSFEQVYMNVACLPEEIDTN------STHVEHNPTN 686
Query: 637 MLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTN 696
LS++ANLTP+SD NQSPRN+YQCQM KQ+MG ALK R D KLY LQT Q+P+VR
Sbjct: 687 FLSILANLTPFSDFNQSPRNIYQCQMGKQSMGTPSTALKHRTDNKLYRLQTGQSPVVRPM 746
Query: 697 TYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSD-- 754
+ Y +D YP GTNAIVAV++YTGYDMEDAMILNKS+ +RG +G +Y+++ +DL D
Sbjct: 747 LHNTYAMDSYPNGTNAIVAVISYTGYDMEDAMILNKSAHERGFAYGTVYKSQIVDLKDMR 806
Query: 755 DGNKVDRGQKLF------RRNKDAKSLHSV--IDSDGLPYVGQMIHPGEPYCSIYDKTTN 806
NK L R + ++ H V +D DGLPY+G + G+P + D+T
Sbjct: 807 GANKSVTAPSLHFGLGPDVRLEGDRAHHCVDFLDLDGLPYIGTRLKAGDPIAAYIDETAG 866
Query: 807 SWRTNSRKGSESVFVDYVAVDMKNSKNLP-QKANIRFRHTRNPIIGDKFSSRHGQKGVCS 865
+ KG E +VD V + +S + QK ++ R TR+P+IGDKFSSRHGQKGVCS
Sbjct: 867 RTKFVKYKGDEMAYVDEVRLLASDSGDTELQKMHVTLRITRSPVIGDKFSSRHGQKGVCS 926
Query: 866 QLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
Q WP +DMPF+ +GM+PD+IINPHAFPSRMTI ML+ES+A K
Sbjct: 927 QKWPAVDMPFT-ESGMQPDVIINPHAFPSRMTIGMLVESMAGK 968
>gi|85115172|ref|XP_964824.1| DNA-directed RNA polymerase I 135 kDa polypeptide [Neurospora
crassa OR74A]
gi|51704242|sp|O74633.2|RPA2_NEUCR RecName: Full=DNA-directed RNA polymerase I subunit RPA2; AltName:
Full=DNA-directed RNA polymerase I polypeptide 2;
Short=RNA polymerase I subunit 2
gi|28926619|gb|EAA35588.1| DNA-directed RNA polymerase I 135 kDa polypeptide [Neurospora
crassa OR74A]
Length = 1234
Score = 706 bits (1821), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 390/906 (43%), Positives = 556/906 (61%), Gaps = 74/906 (8%)
Query: 37 HCRQAKISYTGKLMADVEFQYLDAGSP--VVRERFNFGQFPVMLKTRRCHLQGADSQKLV 94
CR+ +SY GKL A E++ D G P VRE GQ P+M+K+ +CHLQ +LV
Sbjct: 120 ECRERHVSYRGKLSATFEYRIND-GEPHEFVRE---LGQMPIMVKSNKCHLQNNSPAQLV 175
Query: 95 SLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRK 154
+ KEE+ E+GGYFI+NG+E++ R +++ ++N+P+++VR SF++R YT +++R VR
Sbjct: 176 ARKEESEELGGYFIVNGIEKLIRMLLVNRRNFPLAIVRPSFQNRGASYTPYGIIMRSVRP 235
Query: 155 DQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYK 214
D++S T L+YL +G+V F + EYL+PV +++KALV+TND EIF L K
Sbjct: 236 DETSQTNVLHYLSDGNVTFRFSWRKNEYLIPVMMIMKALVETNDREIFEGLVGPPQSK-- 293
Query: 215 KEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETV 274
V + +++RV+++L + L ++ Q ++G+ F+ V+ + S Y V
Sbjct: 294 ----GVANTFLTDRVELLLRTYKKYGLYSKTQTRAYLGQKFRVVLGVPDTMSDYEVGTEF 349
Query: 275 IRDYIFVHLNDNN-------DKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHL 327
+R + VHL + DKFN+L+FM +KL++LV DNPD++QNQEILL G L
Sbjct: 350 LRKIVLVHLGSQDVTEQQDADKFNMLLFMCRKLYALVAGDCAVDNPDAVQNQEILLGGFL 409
Query: 328 ITIYLKEKLEDWLRKG-KKLIQDEIENNGK---KFDFFNLANIKKVMEKNPSKQIGTSIE 383
+KE+LE+ L + ++D + N + D F L + + + ++ IG S+E
Sbjct: 410 YGQIIKERLEELLTVSFRASLRDYLRRNPTVSFQSDTF-LKDFPIAIFRRANENIGQSLE 468
Query: 384 TMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLP 443
L TG L + +GLDLQQ +G+TV AE+LNFLRFIS FR VHRG+ FA L+TT+VRKLLP
Sbjct: 469 YFLSTGNLVSPSGLDLQQVSGFTVVAEKLNFLRFISHFRMVHRGSFFAQLKTTTVRKLLP 528
Query: 444 ESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIP 503
ESWGFLCPVHTPDG PCGLLNH+ C++ + S ++I R+ +G++
Sbjct: 529 ESWGFLCPVHTPDGSPCGLLNHLAHKCKIMTE----------SVDASTISRLAFELGVV- 577
Query: 504 SLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPL 563
+ + + V+LDGR+VG E + + LR KV+ + +P LE+GYVP
Sbjct: 578 ---NISSAATSESVVVMLDGRIVGWCTPEECKSIAETLRYWKVNGENGVPLQLEIGYVPP 634
Query: 564 SLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRN 623
S GG+YPGLY+ + P + VRPV+ + L E+ +GP EQ +M I C + +
Sbjct: 635 SNGGSYPGLYMSSQPARMVRPVKYLPLQKED-----FVGPQEQPYMSIACTE------QE 683
Query: 624 AFP--ATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQK 681
P +TH E PT +LS++AN+TP+SD NQSPRNMYQCQM KQTMG AL R D K
Sbjct: 684 VIPGDSTHVEFDPTNILSILANMTPFSDFNQSPRNMYQCQMGKQTMGTPATALAHRTDNK 743
Query: 682 LYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCH 741
+Y LQT QTP+VR + YG D +P G NA+VAV++YTGYDM+DAMILNKS+ +RG H
Sbjct: 744 MYRLQTGQTPVVRAPLHNTYGFDNFPNGMNAVVAVISYTGYDMDDAMILNKSAHERGFGH 803
Query: 742 GQIYQTETIDLSDDGNKVDRGQ--KLFRRNKDA---KSLHSVIDSDGLPYVGQMIHPGEP 796
G IY+T+ + L DD K+F ++ +S ++D+DGLP VG+++ G+
Sbjct: 804 GSIYKTKKVSLKDDSRTRSAKSIVKMFGFAPNSTIRESTRDMLDNDGLPRVGRLLREGDV 863
Query: 797 YCSIY-------------DKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLP-QKANIRF 842
C+ + D T+ R K SE FV+ V V ++ P Q +I+
Sbjct: 864 ICAWHTVSADYNGQLVNRDGVTHYERY---KDSEDAFVEEVRVIGADNGTEPLQTVSIKL 920
Query: 843 RHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLL 902
R R+P+IGDKFSSRHGQKGV SQ WP DMPFS TG++PD+IINPHAFPSRMTI M +
Sbjct: 921 RIPRSPVIGDKFSSRHGQKGVLSQKWPATDMPFSE-TGIQPDVIINPHAFPSRMTIGMFV 979
Query: 903 ESVAAK 908
ES+A K
Sbjct: 980 ESLAGK 985
>gi|440640399|gb|ELR10318.1| DNA-directed RNA polymerase I subunit RPA2 [Geomyces destructans
20631-21]
Length = 1193
Score = 705 bits (1819), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 391/905 (43%), Positives = 554/905 (61%), Gaps = 66/905 (7%)
Query: 34 MFDHCRQAKISYTGKLMADVEFQYLDAGSPV--VRERFNFGQFPVMLKTRRCHLQGADSQ 91
M CR+ ++Y GK+ A +E++ ++ G PV +RE GQ P+MLK+ +CHL+
Sbjct: 103 MPAECRERHVTYRGKMSARLEYR-INGGDPVEFIRE---LGQIPLMLKSNKCHLENNSPA 158
Query: 92 KLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRC 151
LV KEE+ E+GGYF++NG+E++ R +I+ ++N+PM+++R SF R YT A +IR
Sbjct: 159 LLVERKEESEELGGYFVVNGIEKLIRLLIVNRRNFPMAIIRPSFEGRGPTYTKFATLIRS 218
Query: 152 VRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDE 211
VR DQ+S T L+YL +G+V F + E+L+PV +++KALV+TND EIF L
Sbjct: 219 VRPDQTSQTNVLHYLDDGNVTFRFSWRKNEFLVPVMMIMKALVETNDREIFEDLVGGAGS 278
Query: 212 KYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVA 271
K + +++RV+++L + L T+ + ++GE F+ V+ + S Y V
Sbjct: 279 K------GANNTFLTDRVELLLRTYKAYGLYTKSKTRAYLGEKFRIVLQVPDNMSDYDVG 332
Query: 272 ETVIRDYIFVHLND-------NNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLP 324
+R + HL + + DKF +L+FM++KL+SLV DNPD++QNQEILL
Sbjct: 333 TEFLRKIVMPHLGNVDVTEVQDADKFQMLLFMIRKLYSLVAGDCSLDNPDAVQNQEILLG 392
Query: 325 GHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEK---NPSKQIGTS 381
G L + +KE+L+DWL +L E +F + +K K ++ +G +
Sbjct: 393 GFLYGMIIKERLDDWLSTALRLGLREYTRRNPANNFASPEFLKDFPTKIFGRTNEAVGQA 452
Query: 382 IETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKL 441
+E + TG L + TGLDLQQ +G+TV AE++NFLRFIS FR VHRG+ FA L+TT+VRKL
Sbjct: 453 LEYFMSTGNLISPTGLDLQQTSGFTVVAEKINFLRFISHFRMVHRGSFFAQLKTTTVRKL 512
Query: 442 LPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGM 501
LPESWGFLCPVHTPDG PCGLLNH++ C++ ++ G + L V +GV
Sbjct: 513 LPESWGFLCPVHTPDGSPCGLLNHLSHKCKILTHGVDAGALPS--------LAVDLGVVG 564
Query: 502 IPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYV 561
S + + V+LDG+++G + ++ LR KV +P +LE+ YV
Sbjct: 565 FSS------ASTDESVVVMLDGKILGWCTPKQSLRIADTLRFWKVEGTHNVPVELEIAYV 618
Query: 562 PLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGG-DGG 620
P S GG YPG+YL+T P + VRPV+ + L E+ +GP EQ FM I + D G
Sbjct: 619 PASHGGQYPGVYLYTGPSRMVRPVKYLPLDKED-----WVGPLEQPFMSIAVTEQEIDSG 673
Query: 621 RRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQ 680
TH E PT +LS++AN+TP+SD NQSPRNMYQCQM KQTMG AL++R D
Sbjct: 674 E-----TTHVEFDPTNILSILANMTPFSDFNQSPRNMYQCQMGKQTMGTPGTALRYRTDN 728
Query: 681 KLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMC 740
K Y LQT QTPIVR + YG D +P G NA+VAV++YTGYDM+DAMI+NKS+ +RG
Sbjct: 729 KSYRLQTGQTPIVRAPLHNDYGFDNFPNGFNAVVAVISYTGYDMDDAMIINKSAHERGFG 788
Query: 741 HGQIYQTETIDLSDDGNKVDRGQKL-----FRRNKDAKS-LHSVIDSDGLPYVGQMIHPG 794
HG IY+ + +L D+G K +K+ F KS ++ID DGLP+VG+++ G
Sbjct: 789 HGTIYKVKKYEL-DEGQKSRSAKKVSKLFGFAPGGLVKSEWKALIDEDGLPFVGRLVKEG 847
Query: 795 EPYCSIYDKTTNS-WRTNSRKG---------SESVFVDYVAVDMKNSKNLP-QKANIRFR 843
+P C+ + TT++ + +R G E FV+ V V + N P Q +++FR
Sbjct: 848 DPVCAWHTVTTDANGKLVNRDGITHFEKYKEGEMTFVEEVRVIGSENGNEPAQMISVKFR 907
Query: 844 HTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLE 903
R+P IGDKFSSRHGQKGVCSQ WP DMPFS +GM+PD+IINPHAFPSRMTI M +E
Sbjct: 908 VPRSPTIGDKFSSRHGQKGVCSQKWPAGDMPFS-ESGMQPDIIINPHAFPSRMTIGMFVE 966
Query: 904 SVAAK 908
S+A K
Sbjct: 967 SLAGK 971
>gi|310793783|gb|EFQ29244.1| RNA polymerase Rpb2 [Glomerella graminicola M1.001]
Length = 1225
Score = 705 bits (1819), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 386/901 (42%), Positives = 550/901 (61%), Gaps = 66/901 (7%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSP--VVRERFNFGQFPVMLKTRRCHLQGADSQKLVS 95
CR+ +Y G+L A E++ ++ G P VRE GQ P+M+K+ RCHL+G +LV
Sbjct: 117 CRERHCTYRGRLSATFEYR-INDGDPKEFVRE---LGQVPIMVKSNRCHLEGNSPAQLVQ 172
Query: 96 LKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKD 155
KEE+ E+GGYFI+NG+E++ R + + ++N+PM++ R SF++R +GYT +++R VR D
Sbjct: 173 RKEESEELGGYFIVNGIEKIIRMLQVNRRNFPMAINRPSFQNRGQGYTPYGIILRSVRPD 232
Query: 156 QSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKK 215
++S T L+YL +G++ F + EYL+PV ++LK+LV+TND EIF L K K
Sbjct: 233 ETSQTNVLHYLSDGNMTFRFSWRKNEYLVPVMMILKSLVETNDREIFEGLIGLSGSKSSK 292
Query: 216 EKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVI 275
+ +++RV+++L + L ++ + ++GE F+ V+ + S Y V +
Sbjct: 293 ------NTFLTDRVELLLRTYKSYCLYSKTETRAYLGEKFRVVLGVPDTMSNYDVGTEFL 346
Query: 276 RDYIFVHLN-------DNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLI 328
R + VHL ++NDKF +L+FM++KL++LV DNPD++QNQE+LL G L
Sbjct: 347 RKIVLVHLGNINVTEKEDNDKFRMLLFMIRKLYALVAGDCSVDNPDAVQNQEVLLGGFLY 406
Query: 329 TIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKV---MEKNPSKQIGTSIETM 385
+ LKE+LE++L +L E F + K+ + ++ ++ +G +E
Sbjct: 407 GMILKERLEEFLTTAVRLSLREWTRKHPATPFTSQDFAKEFPANIFRHANENLGNGLEYF 466
Query: 386 LKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPES 445
L TG L + +GLDLQQ AG+TV AE+LNFLRF+S FR +HRGA FA L+TT+VRKLLPES
Sbjct: 467 LSTGNLTSPSGLDLQQTAGFTVVAEKLNFLRFLSHFRMIHRGAFFAELKTTTVRKLLPES 526
Query: 446 WGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSL 505
WGF+CPVHTPDG PCGLLNH+ C++ + D SK+ G++ L
Sbjct: 527 WGFMCPVHTPDGAPCGLLNHLAHKCKIMT------EAVDASKI----------PGLVAEL 570
Query: 506 PKLVKSGPPAVLSV--LLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPL 563
+ S SV +LDGR+VG E ++ LR KV +P LEVGYVP
Sbjct: 571 GAVETSSAATDESVVIMLDGRIVGFCTPRESLRIADTLRYWKVEGTHGVPLQLEVGYVPP 630
Query: 564 SLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRN 623
S GG+YPG+YL ++P + VRPV+ + L E+ +GP EQ +M I +
Sbjct: 631 SNGGSYPGIYLASAPARMVRPVKYLPLDKED-----FVGPHEQPYMSIAVVED----EIV 681
Query: 624 AFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLY 683
+ +TH E PT MLS++AN+TP+SD NQSPRNMYQCQM KQTMG AL++R D K+Y
Sbjct: 682 SGESTHVEFTPTNMLSILANMTPFSDFNQSPRNMYQCQMGKQTMGTPATALRYRTDNKMY 741
Query: 684 HLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQ 743
LQ+ QTP+VR+ + YG D +P G NA+VAV++YTGYDM+DAMILNKS+ +RG HG
Sbjct: 742 RLQSGQTPVVRSPLHNAYGFDNFPNGFNAVVAVISYTGYDMDDAMILNKSAHERGFGHGT 801
Query: 744 IYQTETIDLSDDG--NKVDRGQKLFRRNKDA---KSLHSVIDSDGLPYVGQMIHPGEPYC 798
IY+T+ I L D+ V KLF +D DGLPYVG+++ G+ C
Sbjct: 802 IYKTKKITLKDESRTRSVKNISKLFGFAPGGFVKGHYRGQLDEDGLPYVGRLVQEGDVLC 861
Query: 799 SIYDKTTN----------SWRTNSRKGSESVFVDYVAVDMKNSKNLP-QKANIRFRHTRN 847
+ + + + K SE+ FV+ V V + N P Q +I+ R R+
Sbjct: 862 AWHTVSADYSGKLVNLDGQTHYEKYKDSETAFVEEVRVIGSETGNEPAQTISIKLRVPRS 921
Query: 848 PIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAA 907
P+IGDKFSSRHGQKGV SQ WP +DMPFS +GM+PD+IINPHAFPSRMTI M +ES+A
Sbjct: 922 PVIGDKFSSRHGQKGVASQKWPAVDMPFS-ESGMQPDVIINPHAFPSRMTIGMFVESLAG 980
Query: 908 K 908
K
Sbjct: 981 K 981
>gi|336265681|ref|XP_003347611.1| hypothetical protein SMAC_04919 [Sordaria macrospora k-hell]
gi|380096478|emb|CCC06526.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 1239
Score = 704 bits (1818), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 391/913 (42%), Positives = 552/913 (60%), Gaps = 88/913 (9%)
Query: 37 HCRQAKISYTGKLMADVEFQYLDAGSP--VVRERFNFGQFPVMLKTRRCHLQGADSQKLV 94
CR+ +SY GKL A E++ D G P VRE GQ P+M+K+ +CHLQ +LV
Sbjct: 121 ECRERHVSYRGKLSATFEYRIND-GEPHEFVRE---LGQMPIMVKSNKCHLQNNSPAQLV 176
Query: 95 SLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRK 154
+ EE+ E+GGYF++NG+E++ R +++ ++N+P+++VR SF++R YT +++R VR
Sbjct: 177 ARGEESEELGGYFVVNGIEKLIRMLLMNRRNFPLAIVRPSFQNRGATYTPYGIIMRSVRP 236
Query: 155 DQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYK 214
D++S T L+YL +G+V F + EYL+PV +++KALV+TND EIF L K
Sbjct: 237 DETSQTNVLHYLSDGNVTFRFSWRKNEYLIPVMMIMKALVETNDREIFEGLVGPPQSK-- 294
Query: 215 KEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETV 274
V + +++RV+++L + L ++ Q ++G+ F+ V+ + S Y V
Sbjct: 295 ----GVANTFLTDRVELLLRTYKKYGLYSKTQTRAYLGQKFRVVLGVADTMSDYEVGTEF 350
Query: 275 IRDYIFVHL-------NDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHL 327
+R + VHL + DKFN+L+FM +KL++LV DNPD++QNQEILL G L
Sbjct: 351 LRKIVLVHLGCQDVTEQQDADKFNMLLFMCRKLYALVAGDCAVDNPDAVQNQEILLGGFL 410
Query: 328 ITIYLKEKLE------------DWLRKGKKL-IQDEIENNGKKFDFFNLANIKKVMEKNP 374
+KE+LE D+LR+ + Q E F AN
Sbjct: 411 YGQIIKERLEELLTVSFRASLRDYLRRNPTVSFQSETFTKDFPIAIFRRAN--------- 461
Query: 375 SKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLR 434
+ IG S+E L TG L + +GLDLQQ +G+TV AE+LNFLRFIS FR VHRG+ FA L+
Sbjct: 462 -ENIGQSLEYFLSTGNLVSPSGLDLQQVSGFTVVAEKLNFLRFISHFRMVHRGSFFAQLK 520
Query: 435 TTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVAS-YYDSRGNIRDFSKMRTSIL 493
TT+VRKLLPESWGFLCPVHTPDG PCGLLNH+ C++ + + D+ ++I
Sbjct: 521 TTTVRKLLPESWGFLCPVHTPDGSPCGLLNHLAHKCKIMTDHVDA-----------STIP 569
Query: 494 RVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIP 553
R+ +G++ + + + V+LDGR+VG E + + LR KV+ + +P
Sbjct: 570 RLAFELGVV----NISSAATSESVVVMLDGRIVGWCTPDECKSIAETLRYWKVNGENGVP 625
Query: 554 DDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC 613
LE+GYVP S GG+YPGLY+ + P + VRPV+ + L E+ +GP EQ +M I C
Sbjct: 626 LQLEIGYVPPSNGGSYPGLYMSSQPARMVRPVKYLPLAKED-----FVGPQEQPYMSIAC 680
Query: 614 PDGGDGGRRNAFP--ATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSV 671
+ + P +TH E PT +LS++AN+TP+SD NQSPRNMYQCQM KQTMG
Sbjct: 681 TE------QEVIPGDSTHVEFDPTNILSILANMTPFSDFNQSPRNMYQCQMGKQTMGTPG 734
Query: 672 QALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILN 731
AL R D K+Y LQT QTPIVR + YG D +P GTNA+VAV++YTGYDM+DAMI+N
Sbjct: 735 TALSRRTDNKMYRLQTGQTPIVRAPLHNTYGFDNFPNGTNAVVAVISYTGYDMDDAMIIN 794
Query: 732 KSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQ--KLFRRNKDA---KSLHSVIDSDGLPY 786
KS+ +RG HG IY+T+ + L DD K+F ++ +S +D+DGLP
Sbjct: 795 KSAHERGFGHGSIYKTKKVSLKDDSRTRSAKSIVKMFGFAPNSTIRESTRDTLDNDGLPR 854
Query: 787 VGQMIHPGEPYCSIYDKTT--NSWRTNSR--------KGSESVFVDYVAVDMKNSKNLP- 835
VG+++ G+ C+ + + N N K SE FV+ V V ++ P
Sbjct: 855 VGRLLREGDVLCAWHTVSADYNGQLVNRDGITHYERYKDSEDAFVEEVRVIGADNGTEPL 914
Query: 836 QKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSR 895
Q +I+ R R+P+IGDKFSSRHGQKGVCSQ WP DMPFS TG++PD+IINPHAFPSR
Sbjct: 915 QTVSIKLRIPRSPVIGDKFSSRHGQKGVCSQKWPATDMPFS-ETGIQPDVIINPHAFPSR 973
Query: 896 MTIAMLLESVAAK 908
MTI M +ES+A K
Sbjct: 974 MTIGMFVESLAGK 986
>gi|429859867|gb|ELA34625.1| DNA-directed RNA polymerase i subunit beta [Colletotrichum
gloeosporioides Nara gc5]
Length = 1225
Score = 704 bits (1816), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 384/899 (42%), Positives = 548/899 (60%), Gaps = 62/899 (6%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSP--VVRERFNFGQFPVMLKTRRCHLQGADSQKLVS 95
CR+ +Y G+L A E++ D G P VRE GQ P+M+K+ RCHL+G +LV
Sbjct: 117 CRERHCTYRGRLSATFEYRIND-GDPKEFVRE---LGQVPIMVKSNRCHLEGNSPAQLVQ 172
Query: 96 LKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKD 155
KEE+ E+GGYFI+NG E++ R + + ++N+PM++ R SF++R +GYT +++R VR D
Sbjct: 173 KKEESEELGGYFIVNGNEKIIRMLQVNRRNFPMAINRPSFQNRGQGYTPYGIILRSVRPD 232
Query: 156 QSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKK 215
++S T L+YL +G++ F + EYL+PV ++LKALV+TND EIF L K K
Sbjct: 233 ETSQTNVLHYLSDGNMTFRFSWKKNEYLIPVMMILKALVETNDREIFEGLIGLSHSKSAK 292
Query: 216 EKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVI 275
+ +++RV+++L + L ++ + ++GE F+ V+ + S Y V +
Sbjct: 293 ------NTFLTDRVELLLRTYKSYGLYSKTETRAYLGEKFRVVMGVPDTMSNYDVGTEFL 346
Query: 276 RDYIFVHLN-------DNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLI 328
R + VHL ++NDKF L+FM++KL++LV DNPD+LQNQE+LL G L
Sbjct: 347 RKIVLVHLGNVNVTEKEDNDKFRTLLFMIRKLYALVAGDCAVDNPDALQNQEVLLGGFLY 406
Query: 329 TIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKV---MEKNPSKQIGTSIETM 385
+ +KE+LE++L +L E F + K+ + ++ ++ +G +E
Sbjct: 407 GMIIKERLEEFLTTAVRLSLREWCRKHPATPFTSQEFAKEFPGNIFRHANENVGNGLEYF 466
Query: 386 LKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPES 445
L TG L + +GLDLQQ AG+TV AE+LNFLRFIS FR +HRGA FA L+TT+VRKLLPES
Sbjct: 467 LSTGNLTSPSGLDLQQTAGFTVVAEKLNFLRFISHFRMIHRGAFFAELKTTTVRKLLPES 526
Query: 446 WGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSL 505
WGF+CPVHTPDG PCGLLNH+ C++ + D SK I ++ +G +
Sbjct: 527 WGFMCPVHTPDGAPCGLLNHLAHKCKIMT------ESVDASK----IPALVTELGAV--- 573
Query: 506 PKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSL 565
+ + + ++LDGR++G E ++ LR KV +P LE+GYVP S
Sbjct: 574 -QTSSAATDESVVIMLDGRIIGFCTPRESLRIADTLRHWKVEGTHGVPLQLEIGYVPPSH 632
Query: 566 GGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAF 625
GG+YPG+YL ++P + VRPV+ + L E+ +GP EQ +M I + +
Sbjct: 633 GGSYPGVYLASAPARMVRPVKYLPLDKED-----FVGPHEQPYMSIAVVEN----EIVSG 683
Query: 626 PATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHL 685
TH E PT MLS++AN+TP+SD NQSPRNMYQCQM KQTMG AL+ R D K+Y L
Sbjct: 684 ETTHVEFSPTNMLSILANMTPFSDFNQSPRNMYQCQMGKQTMGTPGAALRHRTDNKMYRL 743
Query: 686 QTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIY 745
Q+ QTP+VR+ + YG D +P GTNA+VAV++YTGYDM+DAMILNKS+ +RG HG IY
Sbjct: 744 QSGQTPVVRSPLHNAYGFDNFPNGTNAVVAVISYTGYDMDDAMILNKSAHERGFGHGTIY 803
Query: 746 QTETIDLSDDG--NKVDRGQKLFRRNKDA---KSLHSVIDSDGLPYVGQMIHPGEPYCSI 800
+T+ + L D+ V KLF + +D DGLP+VG+M+ G+ C+
Sbjct: 804 KTKKVSLKDESRTRSVKNITKLFGFAPGGFVKGHYRAALDEDGLPFVGRMVQEGDVLCAW 863
Query: 801 YDKTTN----------SWRTNSRKGSESVFVDYVAVDMKNSKNLP-QKANIRFRHTRNPI 849
+ + + K SE+ F++ V V + N P Q +I+ R R+P+
Sbjct: 864 HTVSADYSGKLINLDGQTHYEKYKESETAFIEEVRVIGSETGNEPAQTVSIKLRIPRSPV 923
Query: 850 IGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
IGDKFSSRHGQKGV SQ WP IDMPFS +GM+PD+IINPHAFPSRMTI M +ES+A K
Sbjct: 924 IGDKFSSRHGQKGVASQKWPAIDMPFS-ESGMQPDVIINPHAFPSRMTIGMFVESLAGK 981
>gi|410730401|ref|XP_003671380.2| hypothetical protein NDAI_0G03600 [Naumovozyma dairenensis CBS 421]
gi|401780198|emb|CCD26137.2| hypothetical protein NDAI_0G03600 [Naumovozyma dairenensis CBS 421]
Length = 1204
Score = 704 bits (1816), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 386/884 (43%), Positives = 554/884 (62%), Gaps = 54/884 (6%)
Query: 39 RQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKE 98
RQ SY GKLM +++ ++ G V E + G P+ML++ RCHL LV KE
Sbjct: 128 RQRLSSYKGKLMLKLKWS-VNNGEEVYSEVRDCGGLPIMLQSNRCHLNKLSPYDLVQHKE 186
Query: 99 EAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSS 158
E+ EMGGYFI+NG+E++ R +I+ ++N+PM+++R SF +R Y+ + +R VR DQ+S
Sbjct: 187 ESDEMGGYFIINGIEKLIRMLIVQRRNHPMAIIRPSFANRGASYSQYGIQLRSVRPDQTS 246
Query: 159 VTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKG 218
T L+YL +G V F + EYL+PV ++LKAL DT+D EIF+ G
Sbjct: 247 QTNVLHYLNDGQVTFRFSWRKNEYLVPVVMILKALCDTSDREIFD--------------G 292
Query: 219 AVGSPL----VSERVKIILAEVQDL--SLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAE 272
+GS L +++R++++L + +L R Q LQ++G+ F+ +S Y V +
Sbjct: 293 IIGSDLKDSFLTDRLELLLRGFKKRYPTLQNRTQVLQYLGDKFRVAFQASPDKSDYEVGQ 352
Query: 273 TVIRDYIFVHLN--DNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITI 330
+I + VHL +N DKFN+L+FM++KL+SLV DNPD+ Q+QE+LL G L +
Sbjct: 353 ELIDRIVLVHLGKGNNQDKFNMLLFMIRKLYSLVAGECSPDNPDATQHQEVLLGGFLYGM 412
Query: 331 YLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGR 390
+KEK++++L+ I+ + N G +F + + +V+ + + IG+ ++ L TG
Sbjct: 413 IIKEKIDEYLQNIVAQIRTD-SNRGLAINFKDRKYMARVLMR-VNDNIGSKLQYFLSTGN 470
Query: 391 LATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLC 450
L +Q+GLDLQQ +GYTV AE++NF RFIS FR VHRG+ FA L+TT+VRKLLPESWGFLC
Sbjct: 471 LVSQSGLDLQQVSGYTVVAEKINFYRFISHFRMVHRGSFFAQLKTTTVRKLLPESWGFLC 530
Query: 451 PVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVK 510
PVHTPDG PCGLLNH C++++ D S+ + +L +G+ P + +
Sbjct: 531 PVHTPDGSPCGLLNHFAHKCKISTQQS------DVSQ----VPALLYSLGVSP-VSHIFA 579
Query: 511 SGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSA-ASVIPDDLEVGYVPLSLGGAY 569
+GP ++ V +DG+++G + + + + LR KV +P DLE+GYVP S G Y
Sbjct: 580 AGP-SLCCVQIDGKIIGWVSHEQGKIIADTLRFWKVEGKVPGLPLDLEIGYVPPSNSGQY 638
Query: 570 PGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRNAFPAT 628
PGLY+F + +RPV+ + L E+ ++GPFEQV+M I P + T
Sbjct: 639 PGLYIFGGHSRMMRPVKYLPLDKED-----IVGPFEQVYMNIAVTPQEIENNTH-----T 688
Query: 629 HEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTP 688
H E PT +LS++ANLTP+SD NQSPRNMYQCQM KQTMG AL R+D KLY LQ+
Sbjct: 689 HVEFTPTNILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGVALCHRSDNKLYRLQSG 748
Query: 689 QTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTE 748
QTPIV+ N Y YG+D +P GTNA+VAV++YTGYDM+DAMI+NKS+ +RG +G +Y+ E
Sbjct: 749 QTPIVKANLYDDYGMDNFPNGTNAVVAVISYTGYDMDDAMIINKSADERGFGYGTMYKVE 808
Query: 749 TIDLSDDGNKVDRGQKLFRRNKDA--KSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTN 806
+DLS + ++ D + F D K +D DGLPY+G + G+P C+ +D T N
Sbjct: 809 KVDLSLNRSRGDPITQHFGFGNDEWPKEWLDKLDDDGLPYIGTYVEEGDPICAYFDDTLN 868
Query: 807 SWRTNSRKGSESVFVDYVAV--DMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVC 864
+ + SE +++ V + D N Q +I++R R P IGDKFSSRHGQKGVC
Sbjct: 869 KTKIKTYHSSEPAYIEEVNLIGDESNKFQELQTVSIKYRIRRTPQIGDKFSSRHGQKGVC 928
Query: 865 SQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
S+ WP IDMPFS TG++PD+IINPHAFPSRMTI M +ES+A K
Sbjct: 929 SRKWPTIDMPFS-ETGIQPDVIINPHAFPSRMTIGMFVESLAGK 971
>gi|366992025|ref|XP_003675778.1| hypothetical protein NCAS_0C04240 [Naumovozyma castellii CBS 4309]
gi|342301643|emb|CCC69414.1| hypothetical protein NCAS_0C04240 [Naumovozyma castellii CBS 4309]
Length = 1201
Score = 704 bits (1816), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 386/884 (43%), Positives = 552/884 (62%), Gaps = 54/884 (6%)
Query: 39 RQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKE 98
RQ +SY GKLM +++ D G E + G PVML++ RCHL +LV KE
Sbjct: 125 RQRLVSYKGKLMLKLKWSVND-GEETFTEVRDCGGLPVMLQSNRCHLNKLSPYELVQHKE 183
Query: 99 EAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSS 158
E+ E+GGYFI+NG+E++ R +I+ ++N+PM+++R SF +R YT + +R VR DQ+S
Sbjct: 184 ESDELGGYFIINGIEKLIRMLIVQRRNHPMAIIRPSFTNRGAAYTQFGIQLRSVRPDQTS 243
Query: 159 VTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKG 218
T L+YL +G V F + EYL+PV ++LKAL DT+D EIF+ G
Sbjct: 244 QTNVLHYLNDGQVTFRFSWRKNEYLVPVVMILKALCDTSDREIFD--------------G 289
Query: 219 AVGSPL----VSERVKIILAEVQDL--SLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAE 272
+GS L +++R++++L + +L R Q LQ +G+ F+ V +S Y V +
Sbjct: 290 IIGSDLHDSFLTDRLELLLRGFKKRYPTLQNRTQVLQFLGDKFRVVFQASPDKSDYEVGQ 349
Query: 273 TVIRDYIFVHLN--DNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITI 330
V+ + VHL +N DKF +L+FM++KL+SLV DNPD+ Q+QE+LL G L +
Sbjct: 350 EVLDRIVLVHLGKGNNEDKFRMLLFMIRKLYSLVAGECSPDNPDATQHQEVLLGGFLYGM 409
Query: 331 YLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGR 390
+KEK++++L+ + I+ + N G +F + + +V+ + ++ IG+ ++ L TG
Sbjct: 410 IIKEKIDEYLQNIIQQIRTD-SNRGLAINFKDRKYMSRVLMR-VNENIGSKLQYFLSTGN 467
Query: 391 LATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLC 450
L +Q+GLDLQQ +GYTV AE++NF RFIS FR VHRG+ FA L+TT+VRKLLPESWGFLC
Sbjct: 468 LVSQSGLDLQQVSGYTVVAEKINFYRFISHFRMVHRGSFFAQLKTTTVRKLLPESWGFLC 527
Query: 451 PVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVK 510
PVHTPDG PCGLLNH C++++ D S+ I +L +G+ P+ +
Sbjct: 528 PVHTPDGSPCGLLNHFAHKCKISTQQS------DVSQ----IPGLLYQLGVSPASHTIAA 577
Query: 511 SGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAA-SVIPDDLEVGYVPLSLGGAY 569
P+ V +DG+++G + + + + LR KV +P DLE+GYVP S G Y
Sbjct: 578 G--PSQCCVQIDGKIIGWVSHEQGKIIADTLRFWKVEGKIPGLPLDLEIGYVPPSTRGQY 635
Query: 570 PGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRNAFPAT 628
PGLY+F + +RPVR + L E+ ++GPFEQV+M + P + T
Sbjct: 636 PGLYIFGGHSRMMRPVRYLPLDKED-----IVGPFEQVYMNVAVTPQEIENNVH-----T 685
Query: 629 HEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTP 688
H E PT +LS++ANLTP+SD NQSPRNMYQCQM KQTMG AL R+D KLY LQ+
Sbjct: 686 HVEFTPTNILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGVALCHRSDNKLYRLQSG 745
Query: 689 QTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTE 748
QTPIV+ N Y YG+D +P GTNA+VAV++YTGYDM+DAMI+NKS+ +RG +G +Y+ E
Sbjct: 746 QTPIVKANLYDDYGMDNFPNGTNAVVAVISYTGYDMDDAMIINKSADERGFGYGTMYKVE 805
Query: 749 TIDLSDDGNKVDRGQKLFRRNKDA--KSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTN 806
+DLS + ++ D + F D K +D DGLPY+G + G+P C+ +D T N
Sbjct: 806 KVDLSLNRSRGDPITQHFGFGNDEWPKEWLDKLDDDGLPYIGTYVEEGDPICAYFDDTLN 865
Query: 807 SWRTNSRKGSESVFVDYVAV--DMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVC 864
+ + SE +++ V + D N Q +I++R R P IGDKFSSRHGQKGVC
Sbjct: 866 KTKIKTYHSSEPAYIEEVNLIGDESNKFQELQTVSIKYRIRRTPQIGDKFSSRHGQKGVC 925
Query: 865 SQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
S+ WP +DMPFS TG++PD+IINPHAFPSRMTI M +ES+A K
Sbjct: 926 SRKWPTVDMPFS-ETGIQPDVIINPHAFPSRMTIGMFVESLAGK 968
>gi|325192359|emb|CCA26801.1| DNAdirected RNA polymerase I complex subunit Rpa2 p [Albugo
laibachii Nc14]
Length = 1198
Score = 703 bits (1815), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 390/966 (40%), Positives = 567/966 (58%), Gaps = 101/966 (10%)
Query: 12 LRELVRHHIESFDYMLDEGLSEMFD----------------------------------- 36
L LV HI SF+Y+L EGL
Sbjct: 55 LENLVSPHINSFNYLLTEGLHLAIADIARVSIQLPGQNKLSIWIEDAQVGLPFSTNAVKG 114
Query: 37 -------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGAD 89
CRQ ISYT L+ + + + + V R + G P+M++++RCHL
Sbjct: 115 EQKLLPAECRQRGISYTAPLVLTLA-RAFNGSNTVERLQRVVGDIPIMVRSKRCHLHHLS 173
Query: 90 SQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVI 149
Q+LV KEEA E+GGYFI NG ER R + +P++++ M++ R +F +R E YTD AV +
Sbjct: 174 PQRLVQAKEEAYEVGGYFICNGNERCIRLLQMPRRHHVMAVRRGAFTNRGELYTDMAVFM 233
Query: 150 RCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY 209
+CVR+DQSSVT+ L+YL +GS + F ++ +E+++PV +VLKA+ D EI++ +
Sbjct: 234 KCVRRDQSSVTVTLHYLEDGSATVRFSVRKQEFMIPVVLVLKAMYSLTDREIYDRVL--- 290
Query: 210 DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYA 269
+G + ++ R+++++ + + + T+ + L ++G+HF+ V+ S+
Sbjct: 291 -------RGEHTNTFLALRMEVVIQQAKAFGVYTKEEALTYLGKHFRYVLQNSDDASHLQ 343
Query: 270 VAETVIRDYIFVHL----NDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPG 325
V ++I +++FVHL + K LL ML+KL++ DN DS+ NQE+LLPG
Sbjct: 344 VGMSLIDEFVFVHLPKGEKGGSQKAELLCLMLRKLYAFAKGDICEDNSDSVMNQELLLPG 403
Query: 326 HLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETM 385
HL LKEK+++ L+ + I E KK + A ++++ ++ P+ IG ++
Sbjct: 404 HLYLNILKEKIQEGLQSLRIQILKEC---AKKTGVMDDAFMRRLWDRTPN--IGQAMMYF 458
Query: 386 LKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPES 445
L TG L + +GLDL Q AGYT+ AE+LNF R++S FR+VHRG F ++TT+VRKLLP+S
Sbjct: 459 LNTGNLKSSSGLDLMQVAGYTIVAEKLNFYRYLSHFRSVHRGQFFTEMKTTAVRKLLPDS 518
Query: 446 WGFLCPVHTPDGEPCGLLNHMTSTCRVAS--YYDSRGNIRDFSKMRTSILRVLIGVGMIP 503
WGFLCPVHTPDG PCGLLNH+ + C+V +++ +++ K+ R L +GMIP
Sbjct: 519 WGFLCPVHTPDGSPCGLLNHLATECQVVCEPAFEATTILQNELKL----ARFLSSLGMIP 574
Query: 504 S--LPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASV-------IPD 554
S P + L +L +G+V+G PS + LR +K + + I
Sbjct: 575 SNGFSDGALIMPSSYLPILFNGKVIGCAPSDLCVTIQRALRSIKSTRSQADKRCEHGIIA 634
Query: 555 DLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCP 614
+LE+ + +LGG +PGL+L + RP++ + +++ IE IGP EQVFM I C
Sbjct: 635 NLEICLILSTLGGPFPGLFLSADAARLTRPIKQL-----DTEEIEWIGPMEQVFMNIACT 689
Query: 615 DGGDGGRRNAFPAT-HEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQA 673
+ ++ PAT H EI PT MLS+VA+LTP+SD+NQSPRNMYQCQMAKQTMG +
Sbjct: 690 E------KDIRPATTHIEIKPTNMLSLVASLTPFSDYNQSPRNMYQCQMAKQTMGTPCHS 743
Query: 674 LKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKS 733
L R D K+Y +QTPQ+PIV+ +Y +DEYP GTNA+VAV++YTGYDMEDAMILNKS
Sbjct: 744 LSHRGDSKMYRIQTPQSPIVQNERLREYQLDEYPLGTNAVVAVISYTGYDMEDAMILNKS 803
Query: 734 SVDRGMCHGQIYQTETIDLSDDG-----NKVDRGQKLFRR-----NKDAKSLHSVIDSDG 783
S +RG H +Y+ T+D+ DG K D + F + D + +D DG
Sbjct: 804 SYERGFAHASVYKHVTVDIGSDGKQQRTQKQDSSKAYFTNVISDSDSDLQFYSPELDYDG 863
Query: 784 LPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLP-QKANIRF 842
P+VG+ ++ G+P D+TT K SE V+ V + K+++ KAN++
Sbjct: 864 FPHVGKTVYQGDPLACWVDETTGKQSYQKHKESEPAVVEQVTLLGKSTQTCDFTKANLKL 923
Query: 843 RHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLL 902
R RNP+IGDKFSSRHGQKGV S LWP DMPF+ +GM PD+IINPHAFPSRMTI MLL
Sbjct: 924 RFCRNPVIGDKFSSRHGQKGVLSILWPQTDMPFTE-SGMSPDIIINPHAFPSRMTIGMLL 982
Query: 903 ESVAAK 908
ES+AAK
Sbjct: 983 ESMAAK 988
>gi|365757915|gb|EHM99785.1| Rpa135p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii
VIN7]
Length = 1203
Score = 703 bits (1814), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 387/879 (44%), Positives = 548/879 (62%), Gaps = 44/879 (5%)
Query: 39 RQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKE 98
RQ SY GKL+ +++ ++ G + E + G PVML++ RCHL +LV KE
Sbjct: 127 RQRLTSYRGKLLLKLKWS-INNGEENLFEVRDCGGLPVMLQSNRCHLNKMSPYELVQHKE 185
Query: 99 EAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSS 158
E+ E+GGYFI+NG+E++ R +I+ ++N+PM+++R SF +R Y+ + IR VR+DQ+S
Sbjct: 186 ESDEIGGYFIVNGIEKLIRMLIVQRRNHPMAIIRPSFANRGASYSHYGIQIRSVRQDQTS 245
Query: 159 VTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKG 218
T L+YL +G V F + EYL+P ++LKAL T+D EIF+ +
Sbjct: 246 QTNVLHYLNDGQVTFRFSWRKNEYLVPAVMILKALCHTSDREIFDGII----------GN 295
Query: 219 AVGSPLVSERVKIILAEVQDL--SLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIR 276
V +++R++++L + L R Q LQ++G+ F+ V S V + V+
Sbjct: 296 DVKDSFLTDRLELLLRGFKKRYPQLQNRTQVLQYLGDKFRVVFQASPDHSDLEVGQEVLD 355
Query: 277 DYIFVHL--NDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKE 334
+ VHL N N DKF +L+FM++KL+SLV DNPD+ Q+QE+LL G L + LKE
Sbjct: 356 RIVLVHLGKNGNQDKFRMLLFMIRKLYSLVAGECSPDNPDATQHQEVLLGGFLYGMILKE 415
Query: 335 KLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQ 394
K++++L+ ++ +I N G +F + + KV+ + ++ IG+ ++ L TG L +Q
Sbjct: 416 KIDEYLQNIIAQVRMDI-NRGMAINFKDKRYMSKVLMR-VNENIGSKMQYFLSTGNLVSQ 473
Query: 395 TGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHT 454
+GLDLQQ +GYTV AE++NF RFIS FR VHRG+ FA L+TT+VRKLLPESWGFLCPVHT
Sbjct: 474 SGLDLQQVSGYTVVAEKINFYRFISHFRMVHRGSFFAQLKTTTVRKLLPESWGFLCPVHT 533
Query: 455 PDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPP 514
PDG PCGLLNH CR+++ D SK I +L +G+ P+ P
Sbjct: 534 PDGSPCGLLNHFAHKCRIST------EQLDVSK----IPSILYSLGVAPASHTFAAG--P 581
Query: 515 AVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASV-IPDDLEVGYVPLSLGGAYPGLY 573
++ V +DG+++G I + + + LR KV + +P DLE+GYVP S G YPGLY
Sbjct: 582 SLCCVQIDGKIIGWISHEQGKIIADTLRYWKVEGKTPGLPVDLEIGYVPPSTRGQYPGLY 641
Query: 574 LFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIH 633
LF + +RPVR + L E+ ++GPFEQV+M I + N TH E
Sbjct: 642 LFGGHSRMLRPVRYLPLDKED-----IVGPFEQVYMNIAVTP--QEIQNNVH--THVEFT 692
Query: 634 PTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIV 693
PT +LS++ANLTP+SD NQSPRNMYQCQM KQTMG AL R+D KLY LQT QTPIV
Sbjct: 693 PTNILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGVALCHRSDNKLYRLQTGQTPIV 752
Query: 694 RTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLS 753
+ N Y YG+D +P G NA+VAV++YTGYDM+DAMI+NKS+ +RG +G +Y+TE +DL+
Sbjct: 753 KANLYDDYGMDNFPNGFNAVVAVISYTGYDMDDAMIINKSADERGFGYGTMYKTEKVDLA 812
Query: 754 DDGNKVDRGQKLFRRNKDA--KSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTN 811
+ ++ D + F D K +D DGLPY+G + G+P C+ +D T N +
Sbjct: 813 LNRSRGDPITQHFGFGNDEWPKEWLEKLDEDGLPYIGTYVEEGDPICAYFDDTLNKTKIK 872
Query: 812 SRKGSESVFVDYVAV--DMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWP 869
+ SE +++ V + D N Q +I++R R P IGDKFSSRHGQKGVCS+ WP
Sbjct: 873 TYHSSEPAYIEEVNLIGDESNKFQELQTVSIKYRIRRTPQIGDKFSSRHGQKGVCSRKWP 932
Query: 870 DIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
IDMPFS TG++PD+IINPHAFPSRMTI M +ES+A K
Sbjct: 933 TIDMPFS-ETGIQPDIIINPHAFPSRMTIGMFVESLAGK 970
>gi|291244544|ref|XP_002742157.1| PREDICTED: RNA polymerase I polypeptide B-like [Saccoglossus
kowalevskii]
Length = 1133
Score = 703 bits (1814), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 395/946 (41%), Positives = 554/946 (58%), Gaps = 88/946 (9%)
Query: 12 LRELVRHHIESFDYMLDEGLSEMFD----------------------------------- 36
L+ELV+ HIESF++ML EGL+
Sbjct: 25 LQELVKPHIESFNFMLSEGLNLAIQDMQPVEFALPSGEKVSLSFTDASIGVPTVAQGNIH 84
Query: 37 ---------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQG 87
CRQ +Y K+ A + ++ L+ ++E G+ P+++K+ C+L
Sbjct: 85 ALSLKVYPTECRQGGTTYKAKIRAHLCWK-LNNEVKAIKEIL-LGEVPILVKSNSCNLNK 142
Query: 88 ADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAV 147
+L+ EE EMGGYFI+NG+E+V R ++LP++N+PM++ R S+++R + YT+ V
Sbjct: 143 LSPSELIKKNEEVEEMGGYFIINGIEKVIRMIVLPRRNFPMALNRGSWKNRGKLYTEYGV 202
Query: 148 VIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTC 207
+RCV+ DQ++V + L+YL NG+ L F +++ +PV ++LKALVDT D I++ L
Sbjct: 203 SMRCVKPDQTAVNIILHYLTNGTAMLCFSYSKEQFFVPVVLILKALVDTTDQFIYDELMR 262
Query: 208 CYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESY 267
D K KG V +L ++Q LT++ + L+++GE F+ + +
Sbjct: 263 GKD-KNTYYKGCV---------TYMLRQIQTQGLTSQRKILEYLGEMFRVKLGLADWYTD 312
Query: 268 YAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHL 327
E +I+ I VHL +N DKFN L++M++KLF+ + ++N DS NQE+L+ GHL
Sbjct: 313 RQNGEFLIKQCICVHLTNNMDKFNTLVYMVRKLFAFANGECAAENADSTMNQEVLMGGHL 372
Query: 328 ITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLK 387
+YLKEK+ DWL + I+ + + G+ F N + + + + ++E +LK
Sbjct: 373 YLMYLKEKMVDWLVSVRYSIEKQAKVKGQSF-VLNSTTLNSAVGRT---NLSHAVEYLLK 428
Query: 388 TGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWG 447
TG L ++TGL L Q G TV A++LN++R++S FR +HRGA F+ +RTTSVR+LLPE+WG
Sbjct: 429 TGNLNSKTGLGLMQATGLTVVADKLNYVRYLSHFRCIHRGAFFSEMRTTSVRRLLPEAWG 488
Query: 448 FLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPK 507
FLCPVHTPDG PCGLLNHM + C+V + D ++ + + R+L +GM P+
Sbjct: 489 FLCPVHTPDGAPCGLLNHMAALCQV---------VNDQPQV-SHLSRLLCNLGMTPT-DG 537
Query: 508 LVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLS-LG 566
P VLLDGRV+G + ++ LR LKV +P+ LEV VP++
Sbjct: 538 PSPGEPSECYDVLLDGRVLGKVDKEMAGELGNKLRILKVRKEHRVPEMLEVVLVPMTGKC 597
Query: 567 GAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFP 626
YPGLYLF+S + +RPV N++ + E+IG FEQV+M I +
Sbjct: 598 SQYPGLYLFSSVARLMRPVLNLA-----TNTTEMIGTFEQVYMNIAV----TASEAHEGL 648
Query: 627 ATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQ 686
TH E+ +G+LS VA+LTP+SD NQSPRNMYQCQM KQTMG V R D KLY LQ
Sbjct: 649 TTHLELSESGLLSAVASLTPFSDFNQSPRNMYQCQMGKQTMGTPVHTYLHRTDNKLYRLQ 708
Query: 687 TPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQ 746
TPQ+PIVR +Y Y ID YP GTNA+VAV++YTGYDMEDAMILNKSS +RG HG IY+
Sbjct: 709 TPQSPIVRPCSYDTYNIDNYPLGTNAVVAVISYTGYDMEDAMILNKSSYERGFAHGTIYK 768
Query: 747 TETIDLSD-DGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTT 805
TE IDL G K +F D + +D DGLP +G +I PG+P C + T
Sbjct: 769 TEVIDLKKISGEKGKSISLMFGCLPDDRRTEGHLDLDGLPPIGAIIEPGDPLCGYINVET 828
Query: 806 NSWRTNSRKGSESVFVDYVAV---DMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKG 862
N T S K E VD V + D+ ++ QK I R RNP IGDKFSSRHGQKG
Sbjct: 829 NVANTLSFKHHERAVVDNVKLCGNDLGTAEC--QKVYISLRIQRNPTIGDKFSSRHGQKG 886
Query: 863 VCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
VCSQLWP +MPFS +GM PD+I NPH FPSRMTI M++ES+A K
Sbjct: 887 VCSQLWPVENMPFSE-SGMTPDIIFNPHGFPSRMTIGMMIESMAGK 931
>gi|171696212|ref|XP_001913030.1| hypothetical protein [Podospora anserina S mat+]
gi|170948348|emb|CAP60512.1| unnamed protein product [Podospora anserina S mat+]
Length = 1234
Score = 703 bits (1814), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 383/904 (42%), Positives = 556/904 (61%), Gaps = 72/904 (7%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGS-PVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
CR+ +SY GKL A +E++ + + VRE GQ P+M+K+ +CHL+ +LV
Sbjct: 118 CRERHVSYRGKLTAVLEYRINNGDAHEFVRE---LGQMPIMVKSNKCHLENNSPAQLVER 174
Query: 97 KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQ 156
KEE+ E+GGYF++NG+E++ R +++ K+N+P+++ R SF +R YT +++R VR D+
Sbjct: 175 KEESEELGGYFVINGIEKIIRLLLMNKRNFPLAITRPSFTNRGPSYTPHGIIVRSVRPDE 234
Query: 157 SSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKE 216
+S T L+YL +G+V F + EYL+PV ++LKALV+TND EIF L K
Sbjct: 235 TSQTNVLHYLNDGNVTFRFSWRKNEYLVPVMMILKALVETNDREIFESLVGPPTSK---- 290
Query: 217 KGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIR 276
V + +++RV+++L + +L T+ Q ++G+ F+ V+ + + Y V +R
Sbjct: 291 --GVENTFLTDRVELLLRTYKTYNLYTKKQTRAYLGQKFRVVLGVPDTMTDYEVGTEFLR 348
Query: 277 DYIFVHLNDNN-------DKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
+ VHL N+ DKF +L+FM +KL++LV DNPD++QNQEILL G L
Sbjct: 349 KVVLVHLGCNDVTEEQDTDKFKMLLFMCRKLYALVAGDCAVDNPDAVQNQEILLGGFLYG 408
Query: 330 IYLKEKLEDWLRKG-KKLIQDEIENNGKKFDFFNLANIKKVME----KNPSKQIGTSIET 384
+ LKE+LED L + ++D + N D F + +K + ++ IG ++E
Sbjct: 409 MILKERLEDLLSTALRGALRDHLRRN--PTDSFVSESFRKQFPGHIFRKTNENIGNALEY 466
Query: 385 MLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPE 444
L TG L + +GLDLQQ +G+TV AE+LNFLRFIS FR VHRG+ FA L+TT+VRKLLPE
Sbjct: 467 FLSTGNLQSPSGLDLQQVSGFTVVAEKLNFLRFISHFRMVHRGSFFAQLKTTTVRKLLPE 526
Query: 445 SWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPS 504
SWGFLCPVHTPDG PCGLLNH C++ + + + + + GV +
Sbjct: 527 SWGFLCPVHTPDGSPCGLLNHFAHKCKITT--------------KAADVSAVPGVLLELG 572
Query: 505 LPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLS 564
+ + + V+LDG+VVG + + LR+LKV IP +LE+GYVP S
Sbjct: 573 VNNYSSAATTESVVVMLDGKVVGWCAPQNAKPLADTLRQLKVEGGHGIPLELEIGYVPTS 632
Query: 565 LGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDG----GDGG 620
GG+YPG+Y+ ++ + VRPV+ ++L E+ ++GP+EQ +M I C + GD
Sbjct: 633 NGGSYPGIYMASNTSRMVRPVKYLALNKED-----MVGPYEQPYMSIACVEQEIVPGD-- 685
Query: 621 RRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQ 680
+TH E PT +LS++AN+TP+SD NQSPRNMYQCQM KQTMG AL R D
Sbjct: 686 ------STHVEFDPTNILSILANMTPFSDFNQSPRNMYQCQMGKQTMGTPGAALAHRTDN 739
Query: 681 KLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMC 740
K+Y +QT QTP+VR+ + YG D +P G NA+VAV++YTGYDM+DAMI+NKS+ +RG
Sbjct: 740 KMYRIQTGQTPVVRSPLHNTYGFDNFPNGFNAVVAVISYTGYDMDDAMIINKSAHERGFG 799
Query: 741 HGQIYQTETIDLSDDG--NKVDRGQKLFRRNKDA---KSLHSVIDSDGLPYVGQMIHPGE 795
HG IY+T+ I L DD K+F + S ++D DGLPYVG+++ G+
Sbjct: 800 HGSIYKTKKISLKDDSRTRSSKTTTKMFGFAPGSPIRASDREMLDEDGLPYVGRLVREGD 859
Query: 796 PYCSIYDKTTN-SWRTNSRKG---------SESVFVDYVAVDMKNSKNLP-QKANIRFRH 844
+ + + + S + +R G +E F++ V V ++ N P Q +I+ R
Sbjct: 860 IIAAWHTVSADYSGKLVNRDGITHWERYKEAEDAFIEEVRVIGSDTGNEPLQTLSIKLRV 919
Query: 845 TRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLES 904
R+P+IGDKFSSRHGQKGVCSQ WP +DMPFS TG++PD+IINPHAFPSRMTI M +ES
Sbjct: 920 PRSPVIGDKFSSRHGQKGVCSQKWPAVDMPFS-ETGIQPDVIINPHAFPSRMTIGMFVES 978
Query: 905 VAAK 908
+A K
Sbjct: 979 LAGK 982
>gi|392592938|gb|EIW82264.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Coniophora puteana RWD-64-598 SS2]
Length = 1224
Score = 702 bits (1813), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 387/899 (43%), Positives = 547/899 (60%), Gaps = 78/899 (8%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
R+ +SY G++ A + ++ ++ P + G P+M+++ RC+L+ S +LV
Sbjct: 130 ARERLVSYRGRMQAKICWR-INGEEPTQSIMRDCGLVPIMVRSVRCNLRSLPSSELVRRH 188
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
EE E GGYFI+NG ER+ R +ILP++N+ +S++R SF +R YT AV IRCVR DQ+
Sbjct: 189 EEPEEFGGYFIINGNERLIRYLILPRRNHVISLIRPSFTNRGPSYTQHAVQIRCVRPDQT 248
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCC-YDEKYKKE 216
S T L+YL NGS L F + +EY++PV ++LKAL+ +D EIF HL +D +
Sbjct: 249 SATNTLHYLANGSAMLRFSWRKQEYVIPVMLILKALIGASDKEIFEHLMMQDFDNTF--- 305
Query: 217 KGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIR 276
+S+RV+++L + +L T QCL+++G+ F+ V+ + + A+ +++
Sbjct: 306 --------LSDRVELLLRSFKRFALYTGEQCLEYLGDKFRVVLGLPEDWTNKALGVWLLQ 357
Query: 277 DYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKL 336
+ VH + DKF +LIFML+KL++LV DNPDS Q+QE+LLPG+L + +KE+L
Sbjct: 358 KMVLVHADSARDKFRMLIFMLRKLYALVSGACCGDNPDSPQHQEVLLPGYLYGMIIKERL 417
Query: 337 EDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTG 396
E+ L + I ++ + DF + I KV+ K + IG + L TG L + +G
Sbjct: 418 EEGLNAVRNQINIDVRRSEPPVDFIDKRYITKVINK-VNWDIGAKMANFLATGNLISPSG 476
Query: 397 LDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPD 456
LDLQQ +G+T+ AE+LN+LR+IS FR++HRGA FA L+TT+VRKLLPE+WGFLCPVHTPD
Sbjct: 477 LDLQQASGFTIVAEKLNWLRYISHFRSIHRGAFFAELKTTTVRKLLPEAWGFLCPVHTPD 536
Query: 457 GEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTS-ILRVLIGVGMIPSLPKLVKSGPPA 515
G PCGLLNH++ TCR+ + S + + I +L+ GM + +
Sbjct: 537 GSPCGLLNHLSRTCRIVT-----------SPLAVAHIPALLVAHGMTQAFSASIDG--RK 583
Query: 516 VLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLF 575
L V LDGRV+G S ++ +LR K +P DLE+G+VP S GG YPGL+LF
Sbjct: 584 NLCVQLDGRVIGWARPSVARQLAGNLRFWKTEGQHQVPMDLEIGFVPESRGGQYPGLFLF 643
Query: 576 TSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC------PDGGDGGRRNAFPATH 629
++ + +RPV+ + L + Q IG FEQV+M+I PD +TH
Sbjct: 644 STRARMMRPVKYL-LNGKADQ----IGSFEQVYMDIAIQPSEIEPD----------VSTH 688
Query: 630 EEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQ 689
E PT LS++ANLTP+SD NQSPRN+YQCQM KQTMG ++ R D KLY LQT Q
Sbjct: 689 VEHAPTNFLSILANLTPFSDFNQSPRNIYQCQMGKQTMGTPSTVMQHRTDNKLYRLQTGQ 748
Query: 690 TPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTET 749
TPIVR + Y +D YP GTNAIVAV++YTGYDMEDAMILNKS+ +RG +G +Y++
Sbjct: 749 TPIVRPRLHNTYAMDAYPNGTNAIVAVISYTGYDMEDAMILNKSAHERGFGYGTVYKSSI 808
Query: 750 IDLSDDGNKVDRGQKLFRRNKDAKSLH-------------------SVIDSDGLPYVGQM 790
+DL D RG + A +LH + +D DGLP +G
Sbjct: 809 VDLKD-----MRGAS---KATSAPTLHFGLGYEINTTLGDKQHACCNFVDQDGLPIIGAK 860
Query: 791 IHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLP-QKANIRFRHTRNPI 849
++ G+P + D T + KG E VD V V ++ + QK + R TR+P+
Sbjct: 861 LNAGDPLAAYVDDNTGRTKFVKYKGDEQAIVDTVRVIGADAGDSELQKIQVTLRITRSPV 920
Query: 850 IGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
IGDKFSSRHGQKGVCSQ WP +DMPF+ +GM+PD+IINPHAFPSRMTI ML+ES+A K
Sbjct: 921 IGDKFSSRHGQKGVCSQKWPAVDMPFT-ESGMQPDVIINPHAFPSRMTIGMLVESMAGK 978
>gi|346978143|gb|EGY21595.1| DNA-directed RNA polymerase I subunit RPA2 [Verticillium dahliae
VdLs.17]
Length = 1231
Score = 702 bits (1811), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 383/901 (42%), Positives = 548/901 (60%), Gaps = 66/901 (7%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR+ ++Y GKL A EF+ D + + GQ P+M+K+ RCHL+G LV K
Sbjct: 118 CRERHVTYRGKLSATFEFRINDGDAKEFTR--DLGQMPIMVKSNRCHLEGNSPDLLVKRK 175
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
EE+ E+GGYFI+NG+E++ R + + ++N+PM++ R SF +R GY+ +++R VR D++
Sbjct: 176 EESEELGGYFIVNGIEKIIRLLQVNRRNFPMAIYRPSFANRGAGYSPHGIILRSVRPDET 235
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
S T L+YL +G++ F + EYL+PV ++LKALV+TND EIF L K
Sbjct: 236 SQTNVLHYLTDGNMTFRFSWRKNEYLVPVMMILKALVETNDREIFEGLIGSKGSK----- 290
Query: 218 GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRD 277
+ + +++RV+++L L T+ + ++GE F+ V+ + S+Y V ++
Sbjct: 291 -SAQNTFLTDRVELLLRTYTSYGLYTKTETRAYLGEKFRVVLGVPDTMSHYDVGTEFLKR 349
Query: 278 YIFVHLND-------NNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITI 330
+ VHL + ++DKF +L+FM++KL++LV DNPD++QNQE+LL G L +
Sbjct: 350 IVLVHLGNVDVTEQQDSDKFKMLLFMIRKLYALVAGECSVDNPDAIQNQEVLLGGFLYGM 409
Query: 331 YLKEKLEDWLRKGKKLIQDEIENNGKKF--DFFNLANIKK----VMEKNPSKQIGTSIET 384
LKE+L+++L ++ + + +KF F + +K + + ++ +G+ +E
Sbjct: 410 ILKERLDEFLSTA---VRASLRDYHRKFPAKTFTSQDFQKDFPATIFRLANESLGSGLEY 466
Query: 385 MLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPE 444
+ TG L + +GLDLQQ AGYTV AE+LNFLRFIS FR +HRGA FA L+TT+VRKLLPE
Sbjct: 467 FMSTGNLTSPSGLDLQQTAGYTVVAEKLNFLRFISHFRMIHRGAFFAELKTTTVRKLLPE 526
Query: 445 SWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIG-VGMIP 503
SWGFLCPVHTPDG PCGLLNH+ CR+ + + TS L L+ +G +
Sbjct: 527 SWGFLCPVHTPDGSPCGLLNHLAHKCRIMT-----------DPVDTSTLPALVAEMGAVS 575
Query: 504 SLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPL 563
+ + + V+LDGRV+G E ++ LR KV +P +LE+GYVP
Sbjct: 576 T----SSAATDESVVVMLDGRVLGFSTPQESIRIADTLRYWKVEGTHGVPLELEIGYVPP 631
Query: 564 SLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRN 623
S GG+YPGLY+ + + VRPV+ + L Q + +GP EQ +M I +
Sbjct: 632 SNGGSYPGLYIASKAARMVRPVKYLPL-----QKQDYVGPHEQPYMSIAVVEN----EII 682
Query: 624 AFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLY 683
+ +TH E PT MLS++AN+TP+SD NQSPRNMYQCQM KQTMG AL R D KLY
Sbjct: 683 SGESTHVEFDPTNMLSILANMTPFSDFNQSPRNMYQCQMGKQTMGTPATALAHRTDNKLY 742
Query: 684 HLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQ 743
+QT QTP+VR+ + +YG D +P G N++VAV++YTGYDM+DAMILNKSS +RG HG
Sbjct: 743 RIQTGQTPVVRSPLHNEYGFDNFPNGMNSVVAVISYTGYDMDDAMILNKSSHERGFGHGT 802
Query: 744 IYQTETIDLSDDGNKVDRGQ--KLFRRNKDA---KSLHSVIDSDGLPYVGQMIHPGEPYC 798
IY+ + + L DD Q KLF ++ S++D DGLPYVG+M+ G+ C
Sbjct: 803 IYKVKKVSLKDDSRSRTAKQVTKLFGFAPNSFVKGEYRSMLDEDGLPYVGRMVQEGDILC 862
Query: 799 SIYDKTT--NSWRTN--------SRKGSESVFVDYVAVDMKNSKNLP-QKANIRFRHTRN 847
+ + T N TN K SE F++ V + + N P Q +I+ R R
Sbjct: 863 AYHTVTADFNGNLTNLDGQTQYEKYKESEQAFIEEVRIIGSENGNEPAQTVSIKLRVPRA 922
Query: 848 PIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAA 907
P+IGDKFSSRHGQKGV SQ WP DMPF+ +GM+PD IINPHAFPSRMTI M +ES+A
Sbjct: 923 PVIGDKFSSRHGQKGVASQKWPATDMPFT-ESGMQPDTIINPHAFPSRMTIGMFVESLAG 981
Query: 908 K 908
K
Sbjct: 982 K 982
>gi|322694313|gb|EFY86146.1| DNA-directed RNA polymerase I 135 kDa polypeptide [Metarhizium
acridum CQMa 102]
Length = 1231
Score = 702 bits (1811), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/903 (42%), Positives = 558/903 (61%), Gaps = 70/903 (7%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPV--VRERFNFGQFPVMLKTRRCHLQGADSQKLVS 95
CR+ +SY G+L A E+ ++ G P+ VRE GQ P+M+K+ RCHL+ +LV
Sbjct: 118 CRERHVSYRGRLSATFEYS-INGGDPIEFVRE---LGQVPIMIKSNRCHLENNSPAQLVE 173
Query: 96 LKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKD 155
KEE+ E+GGYFI+NG+E++ R + + K+N+PM++ R SF++R GYT +++R VR D
Sbjct: 174 RKEESEELGGYFIVNGIEKIIRLLQVNKRNFPMAINRPSFQNRGAGYTSYGIIVRSVRPD 233
Query: 156 QSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKK 215
++S T L+YL +G++ F + EYL+PV ++LKALV+TND EIF L K
Sbjct: 234 ETSQTNVLHYLNDGNITFRFSWRKNEYLIPVIMILKALVETNDREIFEGLIGPMGSK--- 290
Query: 216 EKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVI 275
A + +++RV+++L + L ++ Q ++GE F+ V+ ++ S Y V +
Sbjct: 291 ---ATENTFLTDRVELLLRTYKRYGLYSKSQTRAYLGEKFRVVLGVPETMSDYEVGTEFL 347
Query: 276 RDYIFVHLNDNN-------DKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLI 328
R + VHL + N DKF +L+FM++KL++L DNPD+LQNQEILL G L
Sbjct: 348 RRIVLVHLGNVNVAEEQDLDKFRMLLFMVRKLYALAAGECAVDNPDALQNQEILLGGFLY 407
Query: 329 TIYLKEKLEDWLRKG-KKLIQDEIENNGKKFDFFNLANIKK----VMEKNPSKQIGTSIE 383
+ LKE+L++++ G + ++D + + + F + +K + + ++ +G ++E
Sbjct: 408 SQILKERLDEFVSVGVRSSLRDFLRRHPQVS--FTSEDFRKEFPGTIFRKANENLGNALE 465
Query: 384 TMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLP 443
L TG L + +GLDLQQ AG+TV AE+LNFLRFIS FR VHRGA FA L+TT+VRKLLP
Sbjct: 466 YFLSTGNLQSPSGLDLQQTAGFTVVAEKLNFLRFISHFRMVHRGAFFAQLKTTAVRKLLP 525
Query: 444 ESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIP 503
ESWGF+CPVHTPDG PCGLLNH+ C++ + + D SK+ ++ R L G++
Sbjct: 526 ESWGFMCPVHTPDGSPCGLLNHLAHKCKIVTDH------VDVSKL-PALAREL---GVVD 575
Query: 504 SLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPL 563
+ L + V++DG+++G E ++ LR KV +P LE+GYVP
Sbjct: 576 TSSALTSEN----VVVMMDGKILGWCSPKESLRIADCLRYWKVEGTHGVPLQLEIGYVPA 631
Query: 564 SLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRR 622
S GG+YPG+Y+ ++P + VRPV+ + L E+ +GP+EQ +M I P + G
Sbjct: 632 SNGGSYPGVYITSTPARMVRPVKYLPLQKED-----FVGPYEQPYMSIAVVPQETESGV- 685
Query: 623 NAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKL 682
+TH E PT MLS++AN+TP+SD NQSPRNMYQCQM KQTMG A+++R D K
Sbjct: 686 ----STHVEFDPTNMLSILANMTPFSDFNQSPRNMYQCQMGKQTMGTPGTAIRYRTDNKS 741
Query: 683 YHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHG 742
Y +QT QTPIVR + YG D +P G NA+VAV++YTGYDM+DAMILNKS+ +RG HG
Sbjct: 742 YRIQTGQTPIVRAPLHNDYGFDNFPNGMNAVVAVISYTGYDMDDAMILNKSAHERGFGHG 801
Query: 743 QIYQTETIDLSDD-----GNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPY 797
IY+T+ I L DD V + + + S ++D DGLP+VG+++ G+
Sbjct: 802 TIYKTKKITLKDDSRTRAAKSVTKAFGFAPHSYVSASYQGMLDDDGLPHVGRLVQEGDVI 861
Query: 798 CSIYDKTTNSWRTN-----------SRKGSESVFVDYVA-VDMKNSKNLPQKANIRFRHT 845
C+ + T + N K E+ FV+ V + + Q +I+FR
Sbjct: 862 CA-WHTVTPDYNGNLVNLDGITHYEKYKDGETGFVEEVRLIGAETGSETLQTVSIKFRIP 920
Query: 846 RNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESV 905
R+PIIGDKFSSRHGQKGV SQ WP IDMPFS +G++PD+IINPHAFPSRMTI M +ES+
Sbjct: 921 RSPIIGDKFSSRHGQKGVASQKWPAIDMPFS-ESGIQPDVIINPHAFPSRMTIGMFVESL 979
Query: 906 AAK 908
A K
Sbjct: 980 AGK 982
>gi|401882641|gb|EJT46891.1| DNA-directed RNA polymerase i polypeptide 2 [Trichosporon asahii
var. asahii CBS 2479]
Length = 1197
Score = 701 bits (1809), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 387/883 (43%), Positives = 546/883 (61%), Gaps = 53/883 (6%)
Query: 39 RQAKISYTGKLMADVEFQYLDAG-----SPVVRERFNFGQFPVMLKTRRCHLQGADSQKL 93
R+ +Y +L ++++ A S VRE G P+M+K+ RC+++G + +L
Sbjct: 128 RERLTTYRSRLTVTIKWKVTTADGTTRESEEVRE---CGMLPIMVKSARCNIRGMPAAEL 184
Query: 94 VSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVR 153
V EE++ GGYFI+NG E++ R +ILP++++P+++ R SF R YT IRCVR
Sbjct: 185 VKHGEESSSWGGYFIINGNEKLVRYLILPRRHHPINLYRPSFAKRGVSYTPYGCQIRCVR 244
Query: 154 KDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKY 213
DQS+ T ++YL NG L F + EY++P+ ++LKALVD +DLEIF L
Sbjct: 245 PDQSACTNTIHYLSNGGATLRFAWRKVEYMIPLVLILKALVDASDLEIFEGLV------- 297
Query: 214 KKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAET 273
+G + +++RV+++L + +L T QCL ++G+ F+ V++ + V
Sbjct: 298 ---QGEYDNTFLTDRVELLLRGQKSWNLQTGTQCLDYLGDKFRVVMNCPDDWTNVQVGSY 354
Query: 274 VIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLK 333
+++ + VHL +KF +L+FML+KL+S+V TS DNPDS Q+ E+LLPG L I +K
Sbjct: 355 LLKKVVLVHLPQPREKFRMLLFMLRKLYSMVAGTSCPDNPDSPQHHEVLLPGFLYAIIIK 414
Query: 334 EKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLAT 393
E+ ++ L K I ++ G+ F + V+ K + +G+ + L TG L +
Sbjct: 415 ERFDESLNAVKAQINMDMRQ-GRAKSFDDPKYFPSVLTKV-NFDVGSKLSYFLATGNLVS 472
Query: 394 QTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVH 453
TGLDLQQ +G+TV AE+LNF R++S FR +HRGA FA L+TT+VRKLLPESWGFLCPVH
Sbjct: 473 PTGLDLQQTSGFTVVAEKLNFYRYLSHFRCIHRGAFFAELKTTAVRKLLPESWGFLCPVH 532
Query: 454 TPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGP 513
TPDG PCGLLNH++ TC++ D SK I ++L GM +
Sbjct: 533 TPDGSPCGLLNHLSHTCQIVV------KPLDTSK----IPQLLSAHGMTQVFATGIDGRT 582
Query: 514 PAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLY 573
V V LDGRV+G ++ +++ LR+LK + +P DLEVGYVP++ GG YPGLY
Sbjct: 583 NVV--VQLDGRVIGWASPTKAKELADLLRKLKTEGDARVPLDLEVGYVPVTKGGQYPGLY 640
Query: 574 LFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRNAFPATHEEI 632
LF S + +RPV + E+ ++ +G FEQV+M+I P+ + G +TH E+
Sbjct: 641 LFGSRSRMMRPVTYL-----ENDKMDHVGTFEQVYMDIAIKPEEVEKGV-----STHVEL 690
Query: 633 HPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPI 692
PT MLSV+ANLTP+SD NQSPRNMYQCQM KQTMG AL+ R D K Y +Q PQTPI
Sbjct: 691 DPTSMLSVLANLTPFSDFNQSPRNMYQCQMGKQTMGTPSTALQHRTDNKFYRIQNPQTPI 750
Query: 693 VRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDL 752
VR + + YG D++P TNAI+AV++YTGYDMEDAMILNKSS +RG +G +Y+ + DL
Sbjct: 751 VRPSLHNDYGFDDFPNATNAILAVISYTGYDMEDAMILNKSSHERGFGYGTVYKADIFDL 810
Query: 753 SDDGNKVDRGQKL-FRRNKDAK---SLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSW 808
D L F +D K +D DGLP +G + G+P C+ D TT
Sbjct: 811 KDAARSRTAAPTLHFGLGRDVKPDSPWRQFLDQDGLPQLGTRVKSGDPLCAYIDDTTGRT 870
Query: 809 RTNSRKGSESVFVDYVAV---DMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCS 865
+ + KG E+ ++D V V D+ +S+ QK +I+ R R+P+IGDKFSSRHGQKGVCS
Sbjct: 871 KVHKYKGDETAYIDEVRVLGSDLGDSEL--QKIHIKLRIPRSPVIGDKFSSRHGQKGVCS 928
Query: 866 QLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
+ DIDMPFS +GMRPD+IINPHAFPSRMTI M +E +AAK
Sbjct: 929 VKFKDIDMPFS-ESGMRPDVIINPHAFPSRMTIGMFVEMLAAK 970
>gi|151942801|gb|EDN61147.1| RNA polymerase A [Saccharomyces cerevisiae YJM789]
gi|349581826|dbj|GAA26983.1| K7_Rpa135p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 1203
Score = 701 bits (1808), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 384/879 (43%), Positives = 549/879 (62%), Gaps = 44/879 (5%)
Query: 39 RQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKE 98
RQ SY GKL+ +++ ++ G + E + G PVML++ RCHL +LV KE
Sbjct: 127 RQRLTSYRGKLLLKLKWS-VNNGEENLFEVRDCGGLPVMLQSNRCHLNKMSPYELVQHKE 185
Query: 99 EAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSS 158
E+ E+GGYFI+NG+E++ R +I+ ++N+PM+++R SF +R Y+ + IR VR DQ+S
Sbjct: 186 ESDEIGGYFIVNGIEKLIRMLIVQRRNHPMAIIRPSFANRGASYSHYGIQIRSVRPDQTS 245
Query: 159 VTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKG 218
T L+YL +G V F + EYL+PV ++LKAL T+D EIF+ +
Sbjct: 246 QTNVLHYLNDGQVTFRFSWRKNEYLVPVVMILKALCHTSDREIFDGII----------GN 295
Query: 219 AVGSPLVSERVKIILAEVQDL--SLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIR 276
V +++R++++L + L R Q LQ++G+ F+ V +S V + V+
Sbjct: 296 DVKDSFLTDRLELLLRGFKKRYPQLQNRTQVLQYLGDKFRVVFQASPDQSDLEVGQEVLD 355
Query: 277 DYIFVHL--NDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKE 334
+ VHL + + DKF +L+FM++KL+SLV DNPD+ Q+QE+LL G L + LKE
Sbjct: 356 RIVLVHLGKDGSQDKFRMLLFMIRKLYSLVAGECSPDNPDATQHQEVLLGGFLYGMILKE 415
Query: 335 KLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQ 394
K++++L+ ++ +I N G +F + + +V+ + ++ IG+ ++ L TG L +Q
Sbjct: 416 KIDEYLQNIIAQVRMDI-NRGMAINFKDKRYMSRVLMR-VNENIGSKMQYFLSTGNLVSQ 473
Query: 395 TGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHT 454
+GLDLQQ +GYTV AE++NF RFIS FR VHRG+ FA L+TT+VRKLLPESWGFLCPVHT
Sbjct: 474 SGLDLQQVSGYTVVAEKINFYRFISHFRMVHRGSFFAQLKTTTVRKLLPESWGFLCPVHT 533
Query: 455 PDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPP 514
PDG PCGLLNH CR+++ D S+ I +L +G+ P+ P
Sbjct: 534 PDGSPCGLLNHFAHKCRISTQQS------DVSR----IPSILYSLGVAPASHTFAAG--P 581
Query: 515 AVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASV-IPDDLEVGYVPLSLGGAYPGLY 573
++ V +DG+++G + + + + LR KV + +P DLE+GYVP S G YPGLY
Sbjct: 582 SLCCVQIDGKIIGWVSHEQGKIIADTLRYWKVEGKTPGLPIDLEIGYVPPSTRGQYPGLY 641
Query: 574 LFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIH 633
LF + +RPVR + L E+ ++GPFEQV+M I + N TH E
Sbjct: 642 LFGGHSRMLRPVRYLPLDKED-----IVGPFEQVYMNIAVTP--QEIQNNVH--THVEFT 692
Query: 634 PTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIV 693
PT +LS++ANLTP+SD NQSPRNMYQCQM KQTMG AL R+D KLY LQT QTPIV
Sbjct: 693 PTNILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGVALCHRSDNKLYRLQTGQTPIV 752
Query: 694 RTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLS 753
+ N Y YG+D +P G NA+VAV++YTGYDM+DAMI+NKS+ +RG +G +Y+TE +DL+
Sbjct: 753 KANLYDDYGMDNFPNGFNAVVAVISYTGYDMDDAMIINKSADERGFGYGTMYKTEKVDLA 812
Query: 754 DDGNKVDRGQKLFRRNKDA--KSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTN 811
+ N+ D + F D K +D DGLPY+G + G+P C+ +D T N +
Sbjct: 813 LNRNRGDPITQHFGFGNDEWPKEWLEKLDEDGLPYIGTYVEEGDPICAYFDDTLNKTKIK 872
Query: 812 SRKGSESVFVDYVAV--DMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWP 869
+ SE +++ V + D N Q +I++R R P IGDKFSSRHGQKGVCS+ WP
Sbjct: 873 TYHSSEPAYIEEVNLIGDESNKFQELQTVSIKYRIRRTPQIGDKFSSRHGQKGVCSRKWP 932
Query: 870 DIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
IDMPFS TG++PD+IINPHAFPSRMTI M +ES+A K
Sbjct: 933 TIDMPFS-ETGIQPDIIINPHAFPSRMTIGMFVESLAGK 970
>gi|6325267|ref|NP_015335.1| Rpa135p [Saccharomyces cerevisiae S288c]
gi|133320|sp|P22138.1|RPA2_YEAST RecName: Full=DNA-directed RNA polymerase I subunit RPA135;
AltName: Full=DNA-directed RNA polymerase I 135 kDa
polypeptide; Short=A135; AltName: Full=DNA-directed RNA
polymerase I polypeptide 2; Short=RNA polymerase I
subunit 2
gi|172464|gb|AAA34993.1| RNA polymerase I (second largest subunit) [Saccharomyces
cerevisiae]
gi|887587|emb|CAA90154.1| Rpa2p [Saccharomyces cerevisiae]
gi|939744|gb|AAA97589.1| Rpa135p [Saccharomyces cerevisiae]
gi|1314085|emb|CAA95050.1| Rpa2p [Saccharomyces cerevisiae]
gi|190407954|gb|EDV11219.1| RNA polymerase I subunit [Saccharomyces cerevisiae RM11-1a]
gi|259150163|emb|CAY86966.1| Rpa135p [Saccharomyces cerevisiae EC1118]
gi|285815545|tpg|DAA11437.1| TPA: Rpa135p [Saccharomyces cerevisiae S288c]
gi|323350179|gb|EGA84326.1| Rpa135p [Saccharomyces cerevisiae VL3]
Length = 1203
Score = 701 bits (1808), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 384/879 (43%), Positives = 549/879 (62%), Gaps = 44/879 (5%)
Query: 39 RQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKE 98
RQ SY GKL+ +++ ++ G + E + G PVML++ RCHL +LV KE
Sbjct: 127 RQRLTSYRGKLLLKLKWS-VNNGEENLFEVRDCGGLPVMLQSNRCHLNKMSPYELVQHKE 185
Query: 99 EAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSS 158
E+ E+GGYFI+NG+E++ R +I+ ++N+PM+++R SF +R Y+ + IR VR DQ+S
Sbjct: 186 ESDEIGGYFIVNGIEKLIRMLIVQRRNHPMAIIRPSFANRGASYSHYGIQIRSVRPDQTS 245
Query: 159 VTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKG 218
T L+YL +G V F + EYL+PV ++LKAL T+D EIF+ +
Sbjct: 246 QTNVLHYLNDGQVTFRFSWRKNEYLVPVVMILKALCHTSDREIFDGII----------GN 295
Query: 219 AVGSPLVSERVKIILAEVQDL--SLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIR 276
V +++R++++L + L R Q LQ++G+ F+ V +S V + V+
Sbjct: 296 DVKDSFLTDRLELLLRGFKKRYPHLQNRTQVLQYLGDKFRVVFQASPDQSDLEVGQEVLD 355
Query: 277 DYIFVHL--NDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKE 334
+ VHL + + DKF +L+FM++KL+SLV DNPD+ Q+QE+LL G L + LKE
Sbjct: 356 RIVLVHLGKDGSQDKFRMLLFMIRKLYSLVAGECSPDNPDATQHQEVLLGGFLYGMILKE 415
Query: 335 KLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQ 394
K++++L+ ++ +I N G +F + + +V+ + ++ IG+ ++ L TG L +Q
Sbjct: 416 KIDEYLQNIIAQVRMDI-NRGMAINFKDKRYMSRVLMR-VNENIGSKMQYFLSTGNLVSQ 473
Query: 395 TGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHT 454
+GLDLQQ +GYTV AE++NF RFIS FR VHRG+ FA L+TT+VRKLLPESWGFLCPVHT
Sbjct: 474 SGLDLQQVSGYTVVAEKINFYRFISHFRMVHRGSFFAQLKTTTVRKLLPESWGFLCPVHT 533
Query: 455 PDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPP 514
PDG PCGLLNH CR+++ D S+ I +L +G+ P+ P
Sbjct: 534 PDGSPCGLLNHFAHKCRISTQQS------DVSR----IPSILYSLGVAPASHTFAAG--P 581
Query: 515 AVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASV-IPDDLEVGYVPLSLGGAYPGLY 573
++ V +DG+++G + + + + LR KV + +P DLE+GYVP S G YPGLY
Sbjct: 582 SLCCVQIDGKIIGWVSHEQGKIIADTLRYWKVEGKTPGLPIDLEIGYVPPSTRGQYPGLY 641
Query: 574 LFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIH 633
LF + +RPVR + L E+ ++GPFEQV+M I + N TH E
Sbjct: 642 LFGGHSRMLRPVRYLPLDKED-----IVGPFEQVYMNIAVTP--QEIQNNVH--THVEFT 692
Query: 634 PTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIV 693
PT +LS++ANLTP+SD NQSPRNMYQCQM KQTMG AL R+D KLY LQT QTPIV
Sbjct: 693 PTNILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGVALCHRSDNKLYRLQTGQTPIV 752
Query: 694 RTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLS 753
+ N Y YG+D +P G NA+VAV++YTGYDM+DAMI+NKS+ +RG +G +Y+TE +DL+
Sbjct: 753 KANLYDDYGMDNFPNGFNAVVAVISYTGYDMDDAMIINKSADERGFGYGTMYKTEKVDLA 812
Query: 754 DDGNKVDRGQKLFRRNKDA--KSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTN 811
+ N+ D + F D K +D DGLPY+G + G+P C+ +D T N +
Sbjct: 813 LNRNRGDPITQHFGFGNDEWPKEWLEKLDEDGLPYIGTYVEEGDPICAYFDDTLNKTKIK 872
Query: 812 SRKGSESVFVDYVAV--DMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWP 869
+ SE +++ V + D N Q +I++R R P IGDKFSSRHGQKGVCS+ WP
Sbjct: 873 TYHSSEPAYIEEVNLIGDESNKFQELQTVSIKYRIRRTPQIGDKFSSRHGQKGVCSRKWP 932
Query: 870 DIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
IDMPFS TG++PD+IINPHAFPSRMTI M +ES+A K
Sbjct: 933 TIDMPFS-ETGIQPDIIINPHAFPSRMTIGMFVESLAGK 970
>gi|323335118|gb|EGA76408.1| Rpa135p [Saccharomyces cerevisiae Vin13]
Length = 1046
Score = 700 bits (1806), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 384/879 (43%), Positives = 549/879 (62%), Gaps = 44/879 (5%)
Query: 39 RQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKE 98
RQ SY GKL+ +++ ++ G + E + G PVML++ RCHL +LV KE
Sbjct: 20 RQRLTSYRGKLLLKLKWS-VNNGEENLFEVRDCGGLPVMLQSNRCHLNKMSPYELVQHKE 78
Query: 99 EAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSS 158
E+ E+GGYFI+NG+E++ R +I+ ++N+PM+++R SF +R Y+ + IR VR DQ+S
Sbjct: 79 ESDEIGGYFIVNGIEKLIRMLIVQRRNHPMAIIRPSFANRGASYSHYGIQIRSVRPDQTS 138
Query: 159 VTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKG 218
T L+YL +G V F + EYL+PV ++LKAL T+D EIF+ +
Sbjct: 139 QTNVLHYLNDGQVTFRFSWRKNEYLVPVVMILKALCHTSDREIFDGII----------GN 188
Query: 219 AVGSPLVSERVKIILAEVQDL--SLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIR 276
V +++R++++L + L R Q LQ++G+ F+ V +S V + V+
Sbjct: 189 DVKDSFLTDRLELLLRGFKKRYPHLQNRTQVLQYLGDKFRVVFQASPDQSDLEVGQEVLD 248
Query: 277 DYIFVHL--NDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKE 334
+ VHL + + DKF +L+FM++KL+SLV DNPD+ Q+QE+LL G L + LKE
Sbjct: 249 RIVLVHLGKDGSQDKFRMLLFMIRKLYSLVAGECSPDNPDATQHQEVLLGGFLYGMILKE 308
Query: 335 KLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQ 394
K++++L+ ++ +I N G +F + + +V+ + ++ IG+ ++ L TG L +Q
Sbjct: 309 KIDEYLQNIIAQVRMDI-NRGMAINFKDKRYMSRVLMR-VNENIGSKMQYFLSTGNLVSQ 366
Query: 395 TGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHT 454
+GLDLQQ +GYTV AE++NF RFIS FR VHRG+ FA L+TT+VRKLLPESWGFLCPVHT
Sbjct: 367 SGLDLQQVSGYTVVAEKINFYRFISHFRMVHRGSFFAQLKTTTVRKLLPESWGFLCPVHT 426
Query: 455 PDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPP 514
PDG PCGLLNH CR+++ D S+ I +L +G+ P+ P
Sbjct: 427 PDGSPCGLLNHFAHKCRIST------QQSDVSR----IPSILYSLGVAPASHTFAAG--P 474
Query: 515 AVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASV-IPDDLEVGYVPLSLGGAYPGLY 573
++ V +DG+++G + + + + LR KV + +P DLE+GYVP S G YPGLY
Sbjct: 475 SLCCVQIDGKIIGWVSHEQGKIIADTLRYWKVEGKTPGLPIDLEIGYVPPSTRGQYPGLY 534
Query: 574 LFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIH 633
LF + +RPVR + L E+ ++GPFEQV+M I + N TH E
Sbjct: 535 LFGGHSRMLRPVRYLPLDKED-----IVGPFEQVYMNIAVTP--QEIQNNVH--THVEFT 585
Query: 634 PTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIV 693
PT +LS++ANLTP+SD NQSPRNMYQCQM KQTMG AL R+D KLY LQT QTPIV
Sbjct: 586 PTNILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGVALCHRSDNKLYRLQTGQTPIV 645
Query: 694 RTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLS 753
+ N Y YG+D +P G NA+VAV++YTGYDM+DAMI+NKS+ +RG +G +Y+TE +DL+
Sbjct: 646 KANLYDDYGMDNFPNGFNAVVAVISYTGYDMDDAMIINKSADERGFGYGTMYKTEKVDLA 705
Query: 754 DDGNKVDRGQKLFRRNKDA--KSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTN 811
+ N+ D + F D K +D DGLPY+G + G+P C+ +D T N +
Sbjct: 706 LNRNRGDPITQHFGFGNDEWPKEWLEKLDEDGLPYIGTYVEEGDPICAYFDDTLNKTKIK 765
Query: 812 SRKGSESVFVDYVAV--DMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWP 869
+ SE +++ V + D N Q +I++R R P IGDKFSSRHGQKGVCS+ WP
Sbjct: 766 TYHSSEPAYIEEVNLIGDESNKFQELQTVSIKYRIRRTPQIGDKFSSRHGQKGVCSRKWP 825
Query: 870 DIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
IDMPFS TG++PD+IINPHAFPSRMTI M +ES+A K
Sbjct: 826 TIDMPFS-ETGIQPDIIINPHAFPSRMTIGMFVESLAGK 863
>gi|406700694|gb|EKD03859.1| DNA-directed RNA polymerase i polypeptide 2 [Trichosporon asahii
var. asahii CBS 8904]
Length = 1212
Score = 700 bits (1806), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 386/884 (43%), Positives = 546/884 (61%), Gaps = 53/884 (5%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAG-----SPVVRERFNFGQFPVMLKTRRCHLQGADSQK 92
R+ +Y +L ++++ A S VRE G P+M+K+ RC+++G + +
Sbjct: 127 ARERLTTYRSRLTVTIKWKVTTADGTTRESEEVRE---CGMLPIMVKSARCNIRGMPAAE 183
Query: 93 LVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCV 152
LV EE++ GGYFI+NG E++ R +ILP++++P+++ R SF R YT IRCV
Sbjct: 184 LVKHGEESSSWGGYFIINGNEKLVRYLILPRRHHPINLYRPSFAKRGVSYTPYGCQIRCV 243
Query: 153 RKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEK 212
R DQS+ T ++YL NG L F + EY++P+ ++LKALVD +DLEIF L
Sbjct: 244 RPDQSACTNTIHYLSNGGAMLRFAWRKVEYMIPLVLILKALVDASDLEIFEGLV------ 297
Query: 213 YKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAE 272
+G + +++RV+++L + +L T QCL ++G+ F+ V++ + V
Sbjct: 298 ----QGEYDNTFLTDRVELLLRGQKSWNLQTGTQCLDYLGDKFRVVMNCPDDWTNVQVGS 353
Query: 273 TVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYL 332
+++ + VHL +KF +L+FML+KL+S+V TS DNPDS Q+ E+LLPG L + +
Sbjct: 354 YLLKKVVLVHLPQPREKFRMLLFMLRKLYSMVAGTSCPDNPDSPQHHEVLLPGFLYAMII 413
Query: 333 KEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLA 392
KE+ ++ L K I ++ G+ F + V+ K + +G+ + L TG L
Sbjct: 414 KERFDESLNAVKAQINMDMRQ-GRAKSFDDPKYFPSVLTKV-NFDVGSKLSYFLATGNLV 471
Query: 393 TQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPV 452
+ TGLDLQQ +G+TV AE+LNF R++S FR +HRGA FA L+TT+VRKLLPESWGFLCPV
Sbjct: 472 SPTGLDLQQTSGFTVVAEKLNFYRYLSHFRCIHRGAFFAELKTTAVRKLLPESWGFLCPV 531
Query: 453 HTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSG 512
HTPDG PCGLLNH++ TC++ D SK I ++L GM +
Sbjct: 532 HTPDGSPCGLLNHLSHTCQIVV------KPLDTSK----IPQLLSAHGMTQVFATGIDGR 581
Query: 513 PPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGL 572
V V LDGRV+G ++ +++ LR+LK + +P DLEVGYVP++ GG YPGL
Sbjct: 582 TNVV--VQLDGRVIGWASPTKAKELADLLRKLKTEGDARVPLDLEVGYVPVTKGGQYPGL 639
Query: 573 YLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRNAFPATHEE 631
YLF S + +RPV + E+ ++ +G FEQV+M+I P+ + G +TH E
Sbjct: 640 YLFGSRSRMMRPVTYL-----ENDKMDHVGTFEQVYMDIAIKPEEVEKGV-----STHVE 689
Query: 632 IHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTP 691
+ PT MLSV+ANLTP+SD NQSPRNMYQCQM KQTMG AL+ R D K Y +Q PQTP
Sbjct: 690 LDPTSMLSVLANLTPFSDFNQSPRNMYQCQMGKQTMGTPSTALQHRTDNKFYRIQNPQTP 749
Query: 692 IVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETID 751
IVR + + YG D++P TNAI+AV++YTGYDMEDAMILNKSS +RG +G +Y+ + D
Sbjct: 750 IVRPSLHNDYGFDDFPNATNAILAVISYTGYDMEDAMILNKSSHERGFGYGTVYKADIFD 809
Query: 752 LSDDGNKVDRGQKL-FRRNKDAK---SLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNS 807
L D L F +D K +D DGLP +G + G+P C+ D TT
Sbjct: 810 LKDAARSRTAAPTLHFGLGRDVKPDSPWRQFLDQDGLPQLGTRVKSGDPLCAYIDDTTGR 869
Query: 808 WRTNSRKGSESVFVDYVAV---DMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVC 864
+ + KG E+ ++D V V D+ +S+ QK +I+ R R+P+IGDKFSSRHGQKGVC
Sbjct: 870 TKVHKYKGDETAYIDEVRVLGSDLGDSEL--QKIHIKLRIPRSPVIGDKFSSRHGQKGVC 927
Query: 865 SQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
S + DIDMPFS +GMRPD+IINPHAFPSRMTI M +E +AAK
Sbjct: 928 SVKFKDIDMPFS-ESGMRPDVIINPHAFPSRMTIGMFVEMLAAK 970
>gi|256270098|gb|EEU05336.1| Rpa135p [Saccharomyces cerevisiae JAY291]
Length = 1203
Score = 700 bits (1806), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 384/879 (43%), Positives = 549/879 (62%), Gaps = 44/879 (5%)
Query: 39 RQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKE 98
RQ SY GKL+ +++ ++ G + E + G PVML++ RCHL +LV KE
Sbjct: 127 RQRLTSYRGKLLLKLKWS-VNNGEENLFEVRDCGGLPVMLQSNRCHLNKMSPYELVQHKE 185
Query: 99 EAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSS 158
E+ E+GGYFI+NG+E++ R +I+ ++N+PM+++R SF +R Y+ + IR VR DQ+S
Sbjct: 186 ESDEIGGYFIVNGIEKLIRMLIVQRRNHPMAIIRPSFANRGASYSHYGIQIRSVRPDQTS 245
Query: 159 VTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKG 218
T L+YL +G V F + EYL+PV ++LKAL T+D EIF+ +
Sbjct: 246 QTNVLHYLNDGQVTFRFSWRKNEYLVPVVMILKALCHTSDREIFDGII----------GN 295
Query: 219 AVGSPLVSERVKIILAEVQDL--SLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIR 276
V +++R++++L + L R Q LQ++G+ F+ V +S V + V+
Sbjct: 296 DVKDSFLTDRLELLLRGFKKRYPHLQNRTQVLQYLGDKFRVVFQASPDQSDLEVGQEVLD 355
Query: 277 DYIFVHL--NDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKE 334
+ VHL + + DKF +L+FM++KL+SLV DNPD+ Q+QE+LL G L + LKE
Sbjct: 356 RIVLVHLGKDGSQDKFRMLLFMIRKLYSLVAGECSPDNPDATQHQEVLLGGFLYGMILKE 415
Query: 335 KLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQ 394
K++++L+ ++ +I N G +F + + +V+ + ++ IG+ ++ L TG L +Q
Sbjct: 416 KIDEYLQNIIAQVRMDI-NRGMAINFKDKRYMSRVLMR-VNENIGSKMQYFLSTGNLVSQ 473
Query: 395 TGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHT 454
+GLDLQQ +GYTV AE++NF RFIS FR VHRG+ FA L+TT+VRKLLPESWGFLCPVHT
Sbjct: 474 SGLDLQQVSGYTVVAEKINFYRFISHFRMVHRGSFFAQLKTTTVRKLLPESWGFLCPVHT 533
Query: 455 PDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPP 514
PDG PCGLLNH CR+++ D S+ I +L +G+ P+ P
Sbjct: 534 PDGSPCGLLNHFAHKCRISTQQS------DVSR----IPSILYSLGVAPASHTFAAG--P 581
Query: 515 AVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASV-IPDDLEVGYVPLSLGGAYPGLY 573
++ V +DG+++G + + + + LR KV + +P DLE+GYVP S G YPGLY
Sbjct: 582 SLCCVQIDGKIIGWVSHEQGKIIADTLRYWKVEGKTPGLPIDLEIGYVPPSTRGQYPGLY 641
Query: 574 LFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIH 633
LF + +RPVR + L E+ ++GPFEQV+M I + N TH E
Sbjct: 642 LFGGHSRMLRPVRYLPLDKED-----IVGPFEQVYMNIAVTP--QEIQNNVH--THVEFT 692
Query: 634 PTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIV 693
PT +LS++ANLTP+SD NQSPRNMYQCQM KQTMG AL R+D KLY LQT QTPIV
Sbjct: 693 PTNILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGVALCHRSDNKLYRLQTGQTPIV 752
Query: 694 RTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLS 753
+ N Y YG+D +P G NA+VAV++YTGYDM+DAMI+NKS+ +RG +G +Y+TE +DL+
Sbjct: 753 KANLYDDYGMDNFPNGFNAVVAVISYTGYDMDDAMIINKSADERGFGYGTMYKTEKVDLA 812
Query: 754 DDGNKVDRGQKLFRRNKDA--KSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTN 811
+ N+ D + F D K +D DGLPY+G + G+P C+ +D T N +
Sbjct: 813 LNRNRGDPITQHFGFGNDEWPKEWLEKLDEDGLPYIGTYVEEGDPICAYFDDTLNKTKIK 872
Query: 812 SRKGSESVFVDYVAV--DMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWP 869
+ SE +++ V + D N Q +I++R R P IGDKFSSRHGQKGVCS+ WP
Sbjct: 873 TYHSSEPAYIEEVNLIGDESNKFQELQTVSIKYRIRRTPQIGDKFSSRHGQKGVCSRKWP 932
Query: 870 DIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
IDMPFS TG++PD+IINPHAFPSRMTI M +ES+A K
Sbjct: 933 TIDMPFS-ETGIQPDIIINPHAFPSRMTIGMFVESLAGK 970
>gi|50552684|ref|XP_503752.1| YALI0E09845p [Yarrowia lipolytica]
gi|49649621|emb|CAG79343.1| YALI0E09845p [Yarrowia lipolytica CLIB122]
Length = 1165
Score = 700 bits (1806), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/876 (42%), Positives = 541/876 (61%), Gaps = 46/876 (5%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR+ +Y +++ + Y G P E + G P+M+ + RCHL+G + +V+ K
Sbjct: 108 CRERMATYRARMV--LTLGYSVNGGPEKFESRDVGMIPIMMGSNRCHLEGMGPKDMVAHK 165
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
EE+ E GGYF++NGLE++ R +I+ ++N+P++++R SF R YT V IR VR DQS
Sbjct: 166 EESEEQGGYFVINGLEKLIRLLIVQRRNHPLAIIRKSFTKRGSNYTTFGVQIRSVRPDQS 225
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
S T L+YL +G + + F + EYL+PV ++LKALV+TND EIF+ + +
Sbjct: 226 SQTNVLHYLSDGGITMRFSWRKNEYLVPVMMILKALVETNDREIFDGIVA--------SE 277
Query: 218 GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRD 277
G+ + +++R++++L + LT++ + L +GE F+ V+D + S V +++
Sbjct: 278 GS--NSFLTDRLELLLRNYKSYKLTSKQENLAFLGEKFRIVMDAPKDMSNEDVGRLMLKR 335
Query: 278 YIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLE 337
I VHL DN DKF +L+FM++KL++LV DNPD++Q+QE+LL G L + +KE++E
Sbjct: 336 VILVHLQDNTDKFRMLLFMIRKLYALVASECSPDNPDAVQHQEVLLGGFLYGMIIKERME 395
Query: 338 DWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNP--SKQIGTSIETMLKTGRLATQT 395
++L ++ E++ KK +L + K + P ++ IG + L TG L + T
Sbjct: 396 EYLSNFCATVRTELQ---KKKQSLHLDDPKIMQRICPRINEDIGRKLHYFLSTGNLVSHT 452
Query: 396 GLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTP 455
GLDLQQ GYTV E++NF RFI+ FR +HRG+ FA L+TT VRKLLPESWGFLCPVHTP
Sbjct: 453 GLDLQQTTGYTVIVEKINFHRFIAHFRMIHRGSFFAELKTTDVRKLLPESWGFLCPVHTP 512
Query: 456 DGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPA 515
DG PCGLLNH+ C ++ G+I S+L L G+ P + P
Sbjct: 513 DGSPCGLLNHLAHKCLISVKKSDVGDI-------DSVLNQL-GIS-----PAGALANTPQ 559
Query: 516 VLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLF 575
V+LDG+++G ++ +R+ KV+ + +P DLEVG VP S GG YPGLYLF
Sbjct: 560 KSVVMLDGKIIGWCTHEIAQQAANTIRQWKVTGDARLPQDLEVGLVPPSRGGQYPGLYLF 619
Query: 576 TSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRNAFPATHEEIHP 634
+F+RPV++++ E +++GPFEQV++ + PD +H E P
Sbjct: 620 AEASRFMRPVKHLATEKE-----DIVGPFEQVYLNVAVTPD------EITNVHSHVEYSP 668
Query: 635 TGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVR 694
T +LS++AN+TP+SD NQSPRNMYQCQM KQ MG + L R+D K+Y LQT Q+PIVR
Sbjct: 669 TNILSILANMTPFSDFNQSPRNMYQCQMGKQAMG-TPGVLTHRSDNKMYRLQTGQSPIVR 727
Query: 695 TNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSD 754
+ +YG+D +P G NA+VAV++YTGYDM+DAMI+NKS+ +RG HG IY+TE +DL++
Sbjct: 728 AGLFDEYGLDNFPNGMNAVVAVISYTGYDMDDAMIINKSAHERGFGHGTIYKTEKVDLTE 787
Query: 755 DGNKVDRGQKLFRRNKD--AKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNS 812
D F D + +D DGLP VG + G+P + YD +N
Sbjct: 788 KQKPGDPTLLHFGFGPDNWPREWTQTLDVDGLPLVGAKLSNGDPIAAYYDSNSNKTMCLK 847
Query: 813 RKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDID 872
K E+ FV+ V + +S QK ++ R R+P+IGDKFSSRHGQKGVCSQ WP D
Sbjct: 848 YKSGETGFVEEVKLLGDDSLGELQKITVKLRIPRSPVIGDKFSSRHGQKGVCSQKWPTYD 907
Query: 873 MPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
MPFS +G++PD+IINPHAFPSRMTI M +ES+AAK
Sbjct: 908 MPFS-ESGIQPDVIINPHAFPSRMTIGMFVESLAAK 942
>gi|299748143|ref|XP_001837493.2| DNA-directed RNA polymerase I polypeptide 2 [Coprinopsis cinerea
okayama7#130]
gi|298407835|gb|EAU84409.2| DNA-directed RNA polymerase I polypeptide 2 [Coprinopsis cinerea
okayama7#130]
Length = 1203
Score = 700 bits (1806), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/884 (43%), Positives = 547/884 (61%), Gaps = 51/884 (5%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
R+ SY G++ V+ + D + G P+M+++ RC+L+ S +LV
Sbjct: 125 ARERLTSYRGRMT--VKLCWTDPSGQKHEMPKDCGLIPIMVRSVRCNLRTLSSAELVQRH 182
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
EE E GGYF++NG ER+ R +ILP++N+ +S++R SF +R YT AV IRCVR DQ+
Sbjct: 183 EEPEEFGGYFVINGNERLIRYLILPRRNHVISLIRPSFSNRGPSYTQYAVQIRCVRPDQT 242
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCC-YDEKYKKE 216
SVT L+YL NGS F + +EY++P+ ++LKALV+ +D EIF + YD +
Sbjct: 243 SVTNTLHYLANGSAMFRFTWRKQEYVIPIMLILKALVNASDKEIFEGVVMQDYDNTF--- 299
Query: 217 KGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIR 276
+++RV+++L + ++ T QCL+++G+ F+ V++ + + A+ +I+
Sbjct: 300 --------LTDRVELLLRSFKMYTMHTGEQCLEYLGDKFRVVLNLPEDWTNAAIGAWLIQ 351
Query: 277 DYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKL 336
+ VHL DKF +L++ML+K++SL+ +DNPDS Q+QE+LLPG L + +KE++
Sbjct: 352 KLVLVHLETPRDKFRMLLYMLRKMYSLISGECCADNPDSPQHQEVLLPGSLYGMIIKERM 411
Query: 337 EDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTG 396
E+ L + I ++ G DF + KV+ K + IG+ + L TG L + TG
Sbjct: 412 EEILNAIRATIAMDVRT-GANVDFHDKKYFAKVLTK-VNFDIGSKMSNFLATGNLVSPTG 469
Query: 397 LDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPD 456
LDLQQ +G+T+ AE+LN+ R+IS FR +HRGA FA L+TT+VRKLLPE+WGFLCPVHTPD
Sbjct: 470 LDLQQASGFTIVAEKLNWQRYISHFRCIHRGAFFAELKTTTVRKLLPEAWGFLCPVHTPD 529
Query: 457 GEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAV 516
G PCGLLNH++ TCR+ + + +I + +L GM S +
Sbjct: 530 GSPCGLLNHLSRTCRIITSPLTVAHIPN----------LLAAHGMTQSFATSIDG--RKN 577
Query: 517 LSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFT 576
L V LDGRV+G ++ +LR K +P DLE+G+VP S GG YPGL+LF+
Sbjct: 578 LCVQLDGRVIGWARPVVAAQLATNLRIWKTEGKYEVPLDLEIGFVPESHGGQYPGLFLFS 637
Query: 577 SPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRNAFPATHEEIHPT 635
+ +F+RPV+ ++ ++ IG FEQV+M I C P+ + G +TH E PT
Sbjct: 638 TKARFMRPVKYLANGKDDQ-----IGSFEQVYMNIACTPEEIEEGV-----STHVEHDPT 687
Query: 636 GMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRT 695
LS++AN+TP+SD NQSPRN+YQCQM KQTMG A++ R D KLY LQT Q+PIVR
Sbjct: 688 NFLSILANMTPFSDFNQSPRNIYQCQMGKQTMGTPATAIQHRTDNKLYRLQTGQSPIVRP 747
Query: 696 NTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSD- 754
+ + YG+D +P GTNA+VAV++YTGYDMEDAMILNKS+ +RG +G IY+++ IDL +
Sbjct: 748 SLHNTYGMDAFPNGTNAVVAVISYTGYDMEDAMILNKSAHERGFTYGTIYKSQIIDLKEV 807
Query: 755 -DGNKVDRGQKL-------FRRNKD-AKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTT 805
+K L R D A +D DGLP+ G + PG+P + D TT
Sbjct: 808 RGASKSSSTPTLHFGIAGDIRLTGDNAHPCAEFVDKDGLPFPGVRVKPGDPLAAYIDDTT 867
Query: 806 NSWRTNSRKGSESVFVDYVAVDMKNSKNLP-QKANIRFRHTRNPIIGDKFSSRHGQKGVC 864
R KG E+ +VD V + ++ + QK ++ R R P+IGDKFSSRHGQKGVC
Sbjct: 868 GRTRFVKYKGDETAYVDQVRLLGSDAGDSELQKVHVTLRIPRAPVIGDKFSSRHGQKGVC 927
Query: 865 SQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
SQ WP IDMPFS +G++PD+IINPHAFPSRMTI ML+ES+A K
Sbjct: 928 SQKWPAIDMPFS-ESGIQPDVIINPHAFPSRMTIGMLVESMAGK 970
>gi|367019086|ref|XP_003658828.1| hypothetical protein MYCTH_2295109 [Myceliophthora thermophila ATCC
42464]
gi|347006095|gb|AEO53583.1| hypothetical protein MYCTH_2295109 [Myceliophthora thermophila ATCC
42464]
Length = 1234
Score = 699 bits (1805), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 387/905 (42%), Positives = 551/905 (60%), Gaps = 74/905 (8%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSP--VVRERFNFGQFPVMLKTRRCHLQGADSQKLVS 95
CR+ +SY GKL A E++ D G P VRE GQ P+M+K+ +CHL+ LV
Sbjct: 118 CRERHVSYRGKLTAVFEYRIND-GEPQEFVRE---LGQMPIMVKSNKCHLENNPPALLVQ 173
Query: 96 LKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKD 155
KEE+ E+GGYFI+NG+E++ R +++ ++N+P++++R SF +R YT +++R VR D
Sbjct: 174 RKEESEELGGYFIINGIEKIIRLLLVNRRNFPLAIIRPSFANRGSSYTQYGIIVRSVRPD 233
Query: 156 QSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKK 215
++S T L+YL +G+V F + EYL+PV ++LKAL++TND EIF L + K
Sbjct: 234 ETSQTNVLHYLNDGNVTFRFSWRKNEYLVPVMMILKALIETNDREIFEGLVGPPNSK--- 290
Query: 216 EKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVI 275
+ + +++RV+++L + L T+ Q ++G+ F+ V+ + S Y V +
Sbjct: 291 ---GIENTFLTDRVELLLRTYKSYGLYTKTQTRAYLGQKFRVVLGVPDTMSDYEVGTEFL 347
Query: 276 RDYIFVHLN-------DNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLI 328
R + VHL + DKF +L+FM +KL++LV DNPD++QNQEILL G L
Sbjct: 348 RKVVLVHLGCVDVTEEQDLDKFKMLLFMCRKLYALVAGDCAVDNPDAVQNQEILLGGFLY 407
Query: 329 TIYLKEKLEDWLRKG-KKLIQDEIENNGKKFDFFNLANIKKV---MEKNPSKQIGTSIET 384
+ LKE+L++ L K ++D + N F + + K + + ++ +G ++E
Sbjct: 408 GMILKERLDELLSVSLKAALRDYLRRN-PTLSFTSSSFAKDFPISIFRRTNENLGNALEY 466
Query: 385 MLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPE 444
L TG L + +GLDLQQ +G+TV AE+LNFLRFIS FR VHRG+ FA L+TT+VRKLLPE
Sbjct: 467 FLSTGNLQSPSGLDLQQTSGFTVVAEKLNFLRFISHFRMVHRGSFFAQLKTTTVRKLLPE 526
Query: 445 SWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSI-LRVLIGVGMIP 503
SWGFLCPVHTPDG PCGLLNH+ C++ M S+ + + GV M
Sbjct: 527 SWGFLCPVHTPDGAPCGLLNHLAHKCKI---------------MTESVDVSAVPGVAMEL 571
Query: 504 SLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPL 563
+ + + V+LDGR++G + V LRR KV IP LE+GYVP
Sbjct: 572 GVNDYSSAATSESVVVMLDGRIIGWCTPKAAKAVADTLRRWKVEGGHGIPVLLEIGYVPP 631
Query: 564 SLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRN 623
S GG+YPG+Y+ + P + VRPV+ + L E+ +GP EQ +M I C +
Sbjct: 632 SRGGSYPGIYMASQPSRMVRPVKYLPLGKED-----FVGPHEQPYMSIACTE------EE 680
Query: 624 AFP--ATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQK 681
P +TH E PT +LS++AN+TP+SD NQSPRNMYQCQM KQ+MG A+++R D K
Sbjct: 681 VIPGDSTHVEFDPTNILSILANMTPFSDFNQSPRNMYQCQMGKQSMGTPGAAIRYRTDNK 740
Query: 682 LYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCH 741
+Y LQT QTPIVR + YG D +P G NA+VAV++YTGYDM+DAMILNKS+ +RG H
Sbjct: 741 MYRLQTGQTPIVRAPLHNTYGFDNFPNGMNAVVAVISYTGYDMDDAMILNKSAHERGFGH 800
Query: 742 GQIYQTETIDLSDDGNKVDRGQKLFRR-------NKDAKSLHSVIDSDGLPYVGQMIHPG 794
G IY+T+ I L DD R K R + S ++D DGLPYVG+++ G
Sbjct: 801 GTIYKTKKISLKDDTRT--RTSKTITRMFGFAPGSPVRASDREMLDEDGLPYVGRLVREG 858
Query: 795 EPYCSIYDKTTN-SWRTNSRKG---------SESVFVDYVAVDMKNSKNLP-QKANIRFR 843
+ C+ + + + S + +R G +E F++ V V +S N P Q +I+ R
Sbjct: 859 DILCAWHTVSADYSGQLINRDGITHWERYKEAEDAFIEEVRVIGSDSGNEPLQTISIKLR 918
Query: 844 HTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLE 903
R+P+IGDKFSSRHGQKGV SQ WP IDMPFS +G++PD+IINPHAFPSRMTI M +E
Sbjct: 919 IPRSPVIGDKFSSRHGQKGVASQKWPAIDMPFS-ESGIQPDVIINPHAFPSRMTIGMFVE 977
Query: 904 SVAAK 908
S+A K
Sbjct: 978 SLAGK 982
>gi|212533185|ref|XP_002146749.1| DNA-directed RNA polymerase I subunit beta (Rpa2), putative
[Talaromyces marneffei ATCC 18224]
gi|210072113|gb|EEA26202.1| DNA-directed RNA polymerase I subunit beta (Rpa2), putative
[Talaromyces marneffei ATCC 18224]
Length = 1261
Score = 699 bits (1804), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 388/903 (42%), Positives = 562/903 (62%), Gaps = 68/903 (7%)
Query: 38 CRQAKISYTGKLMADVEFQYLDA-GSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
CR+ +Y G+L A +++Q + VRE GQ P+ML++ RCHL+ Q+LV
Sbjct: 135 CRERHATYRGRLRARLQYQVNNGEWRESVRE---LGQVPLMLRSNRCHLESFSPQELVDH 191
Query: 97 KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQ 156
KEE+ E+GGYFI+NG E++ R +I+PK+N+PM++ R SF+ R G+T V IR R DQ
Sbjct: 192 KEESEELGGYFIVNGNEKLIRMLIMPKRNFPMAINRPSFQKRGVGFTTFGVQIRSARPDQ 251
Query: 157 SSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKE 216
++ T L+YL +G+V F + +EYL+PV ++LKALV+TND EIF +
Sbjct: 252 TTQTNVLHYLSDGNVTFRFSWRKQEYLVPVMMILKALVETNDREIFEGIV-----GNASS 306
Query: 217 KGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIR 276
KG+ + V++RV+++L + +R ++G+ F+PV+ + ++ +R
Sbjct: 307 KGSANT-FVTDRVELLLRTFHGYKIWSRSDARAYLGKKFRPVLFAPATWTHEECGTEFLR 365
Query: 277 DYIFVHLNDNN-------DKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
+ HL + N DKF L++FM++KL+S V SDNPD++ NQEI+L G++
Sbjct: 366 KIVLPHLGNQNVTTTQDYDKFKLILFMIRKLYSFVAGDCASDNPDAVSNQEIMLGGYVYG 425
Query: 330 IYLKEKLEDWLRKGKKLIQDEIENNGK-KFD--FFNLANIKKVMEKNPSKQIGTSIETML 386
+ LKE+LE+WL +L++D G KF F I KV+++ ++ +G ++E L
Sbjct: 426 MLLKERLEEWLLSFGRLLRDWSYKGGNLKFTDPMFEKDFISKVIKRT-NENLGGALEYFL 484
Query: 387 KTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESW 446
TG L + TGLD+QQ +G+TV AE++NF RFIS FR VHRG FA L+TT+VRKLLPESW
Sbjct: 485 STGNLVSPTGLDMQQASGFTVVAEKINFYRFISHFRMVHRGTFFAQLKTTTVRKLLPESW 544
Query: 447 GFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTS-ILRVLIGVGM-IPS 504
GF+CPVHTPDG PCGLLNH+ C V++ S + + I RVL +G+ S
Sbjct: 545 GFMCPVHTPDGSPCGLLNHLAHKCLVST-----------SDLDVAHIPRVLAQLGIKTES 593
Query: 505 LPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLS 564
++ +S + V L+GRV+G + + + LR KV IP +LE+GY+P
Sbjct: 594 SAEVTES-----VCVQLNGRVIGYCSPKQAKMIHDTLRFWKVEGTHGIPKELEIGYIPNM 648
Query: 565 LGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNA 624
GG YPG+Y+ + P + RPV+ ++L ++ +GPFEQ FMEI C + R+
Sbjct: 649 QGGQYPGIYMSSQPARMYRPVKYLAL-----DKLDYVGPFEQPFMEIACLEEDI---RSG 700
Query: 625 FPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYH 684
+TH E PT M S++AN+TP+SD+NQSPRNMYQCQM+KQTMG ++ FR D K+Y
Sbjct: 701 L-STHIEFTPTNMFSIIANMTPFSDNNQSPRNMYQCQMSKQTMGTPGTSIAFRTDNKMYR 759
Query: 685 LQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQI 744
LQT QTPIVR+ Y +YG+D +P G NAIVA+L+Y+ YDM+DAMI+NKSS +RG HG +
Sbjct: 760 LQTGQTPIVRSPLYNEYGLDNFPNGCNAIVAILSYSAYDMDDAMIINKSSHERGFGHGTV 819
Query: 745 YQTETIDLSDDGNKVDRGQ----KLFRRNKDAK---SLHSVIDSDGLPYVGQMIHPGE-- 795
Y+T+ +L D ++ ++ + KLF A+ + +D DGLP+ G + G
Sbjct: 820 YKTKFYNLDDKDSRRNKSKREISKLFGFAPGAEIKAEWRTTLDEDGLPHPGVKVKEGSYV 879
Query: 796 --PYCSIYDKTTNSW-----RTN--SRKGSESVFVDYVAVDMKNSKNLP-QKANIRFRHT 845
Y YD ++S+ +T+ K +E ++D V + + N P Q ++++R
Sbjct: 880 AAWYNVRYDAGSDSYVNVDGQTHFLKYKDAEEGYIDTVRLVGNENGNEPLQAISVKYRVP 939
Query: 846 RNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESV 905
R PIIGDKFSSRHGQKGVCSQLWP IDMPFS +G+ PDLIINPHAFPSRMTIA ++ES+
Sbjct: 940 RKPIIGDKFSSRHGQKGVCSQLWPAIDMPFS-ESGIMPDLIINPHAFPSRMTIAQIIESM 998
Query: 906 AAK 908
A K
Sbjct: 999 AGK 1001
>gi|315039663|ref|XP_003169207.1| DNA-directed RNA polymerase I subunit RPA2 [Arthroderma gypseum CBS
118893]
gi|311337628|gb|EFQ96830.1| DNA-directed RNA polymerase I subunit RPA2 [Arthroderma gypseum CBS
118893]
Length = 1243
Score = 699 bits (1803), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 392/908 (43%), Positives = 555/908 (61%), Gaps = 77/908 (8%)
Query: 38 CRQAKISYTGKLMADVEFQYLDA-GSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
CR+ +Y GKL A +E++ + VRE GQ P+ML++ RCHL+ A +LV
Sbjct: 127 CRERHATYRGKLRARLEYRVNNGEWKESVRE---LGQVPIMLRSNRCHLEKATPAQLVDR 183
Query: 97 KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQ 156
KEE+ E+GGYF++NG E++ R +I+ K+N+P +++R+SF+ R YT V IR VR DQ
Sbjct: 184 KEESEELGGYFVVNGNEKLIRMLIVGKRNFPTAIIRNSFQKRGSAYTKFGVQIRSVRPDQ 243
Query: 157 SSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKE 216
+S T L+YL +G+V F + EYL+PV ++LKAL++TND EIF L
Sbjct: 244 TSQTNVLHYLNDGNVTFRFSWRKNEYLVPVMMILKALIETNDREIFERLV--------GG 295
Query: 217 KGAVG--SPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETV 274
+G++G + V++RV+++L + + +R +C ++G F+ V+ + V
Sbjct: 296 EGSLGIENTFVTDRVELLLRTYKAYGVHSRSKCRAYLGSKFRFVLGMPEDVPDEDVGTEF 355
Query: 275 IRDYIFVHLND-------NNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHL 327
+R + HL + NNDKFN+++FM++KL++LV DNPD++ NQE+LL G+L
Sbjct: 356 LRKIVLPHLGNQNVTETQNNDKFNMILFMIRKLYNLVAGDCAPDNPDAVSNQEVLLGGYL 415
Query: 328 ITIYLKEKLEDWLRKGKKLIQD-EIENNGKKFD--FFNLANIKKVMEKNPSKQIGTSIET 384
+ LKE+LE+WL+ +++D ++N+ KF F + +V+ + ++ IG ++E
Sbjct: 416 YGMLLKERLEEWLKSVGPIVRDWRLKNDDAKFTDPSFERDFLARVIGRT-NENIGGAMEY 474
Query: 385 MLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPE 444
L TG L + TGLDLQQ +GYTV AE++NF RFIS FR +HRG+ FA L+TT+VRKLLPE
Sbjct: 475 FLSTGNLVSPTGLDLQQPSGYTVMAEKINFYRFISHFRMIHRGSFFAQLKTTTVRKLLPE 534
Query: 445 SWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTS-ILRVLIGVGMIP 503
SWGFLCPVHTPDG PCGLLNH+ C +++ S + S + VL G+G+
Sbjct: 535 SWGFLCPVHTPDGSPCGLLNHLAHKCLIST-----------SNLDVSGVPGVLAGLGVTS 583
Query: 504 SLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPL 563
+ P VLLDG+++G + + LR KV IP +LE+GYVP
Sbjct: 584 ESSCSTEESIP----VLLDGKILGYCTPKQSRVIADTLRYWKVQGHKHIPVELEIGYVPS 639
Query: 564 SLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC--PDGGDGGR 621
S GG YPG+Y+F+ + RPVR + L ++ +GPFEQ +MEI C D +G
Sbjct: 640 SNGGQYPGVYMFSEAARMYRPVRYLPL-----DRLDYVGPFEQPYMEIACVASDIKNG-- 692
Query: 622 RNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQK 681
+TH E PT +LS++AN+TP+SD NQSPRNMYQCQM KQ MG A+++R D K
Sbjct: 693 ----VSTHIEFDPTHILSILANMTPFSDFNQSPRNMYQCQMGKQAMGTPGTAIEYRTDNK 748
Query: 682 LYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCH 741
LY LQT QTP+VR Y YG+D +P G NA+VAV++YTGYDM+DAMI+NKSS +RG +
Sbjct: 749 LYRLQTGQTPVVRPPLYNAYGLDNFPNGMNAVVAVISYTGYDMDDAMIINKSSHERGFGY 808
Query: 742 GQIYQTETIDLSDDGNKVDRGQ------KLFRRNKDA---KSLHSVIDSDGLPYVGQMIH 792
G IY+T+ L DD RG+ KLF S +D DGLP++G +
Sbjct: 809 GTIYKTKIYAL-DDKESRGRGKSKRAITKLFGFAPGGLIKAEWKSQLDEDGLPHIGAKVS 867
Query: 793 PGEPYCSI----YDKTTNSWRTNSR-------KGSESVFVDYVAVDMKNSKN-LPQKANI 840
G C+ YD T+++ + K E FVD V V + N + Q +I
Sbjct: 868 EGSLVCAWYTVQYDPATDTYINVDKQTHFLKYKDGEEGFVDSVRVLGSETGNEVCQAVSI 927
Query: 841 RFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAM 900
++R R P+IGDKFSSRHGQKGV SQLWP DMPFS +G++PD+IINPHAFPSRMTI M
Sbjct: 928 KYRVPRRPVIGDKFSSRHGQKGVLSQLWPSADMPFS-ESGIQPDVIINPHAFPSRMTIGM 986
Query: 901 LLESVAAK 908
+ES+A K
Sbjct: 987 FVESLAGK 994
>gi|425766233|gb|EKV04857.1| DNA-directed RNA polymerase [Penicillium digitatum PHI26]
gi|425779048|gb|EKV17139.1| DNA-directed RNA polymerase [Penicillium digitatum Pd1]
Length = 1268
Score = 699 bits (1803), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 388/927 (41%), Positives = 563/927 (60%), Gaps = 97/927 (10%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPV--VRERFNFGQFPVMLKTRRCHLQGADSQKLVS 95
CR+ +Y GKL A +E+Q ++ G + VRE G P+M++T RCHL+ A +LV
Sbjct: 128 CRERHSTYRGKLRARLEYQ-VNNGDWMESVRE---LGNVPIMVRTNRCHLEKATPDELVR 183
Query: 96 LKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKD 155
EE+ E+GG++I+NG E++ R +++ K+NYPMS++R SF R + YT V IR VR D
Sbjct: 184 HNEESEELGGFYIVNGNEKLIRMLVVGKRNYPMSIIRGSFVKRGQTYTKFGVQIRSVRPD 243
Query: 156 QSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKK 215
Q+S T L+YL +G+V F + EYL+PV ++LKAL +TND EIF + K K
Sbjct: 244 QTSQTNVLHYLSDGNVTFRFSWRKNEYLIPVMMILKALAETNDREIFEAIVGGASSKGMK 303
Query: 216 EKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVI 275
+ V++RV+++L ++ C H+G+ F+PV+ V +
Sbjct: 304 ------NTFVTDRVELLLRTYHAYQKHSQYDCRSHLGKAFRPVLGVPADMPDEEVGTEFL 357
Query: 276 RDYIFVHLNDNN-------DKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLI 328
R + HL + N DKF L+ FM++KL+S V DNPD++ NQEILL G L
Sbjct: 358 RKVVLPHLGNENVTEAQDWDKFKLITFMIRKLYSTVAGDCAPDNPDAVSNQEILLGGFLY 417
Query: 329 TIYLKEKLEDWLRKGKKLIQD-EIENNGKKF--DFFNLANIKKVMEKNPSKQIGTSIETM 385
+ LKE++E+WLR + +D I NNG KF + F + K+++++ ++ IG ++E
Sbjct: 418 GMILKERIEEWLRSFGPIARDWSIRNNGAKFTDEAFERDFLSKIVKRS-NENIGNALEYF 476
Query: 386 LKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPES 445
L TG L + TGLDLQQ +GYTV AE++NF RFIS FR +HRG+ FA L+TT+VRKLLPES
Sbjct: 477 LSTGNLVSPTGLDLQQTSGYTVIAEKINFYRFISHFRMIHRGSFFAQLKTTTVRKLLPES 536
Query: 446 WGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSL 505
WGFLCPVHTPDG PCGLLNH+ C +++ + D S++ R L+ +G
Sbjct: 537 WGFLCPVHTPDGSPCGLLNHLAHKCFIST------DNLDVSQLP----RTLVQLG----- 581
Query: 506 PKLVKSGPPAVLS----VLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYV 561
V+S L V LDGR++G + +++ +R KV + IP +LE+GY+
Sbjct: 582 ---VRSESSVALDESVVVQLDGRIIGYCSPKQAQRIADTIRYWKVEGKNNIPRELEIGYI 638
Query: 562 PLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGR 621
P S GG YPG+Y+F+ + RPV+ ++L ++ +GPFEQ FMEI C +
Sbjct: 639 PNSSGGQYPGVYMFSQSARMYRPVKYLAL-----DKLDYVGPFEQPFMEIACVES----- 688
Query: 622 RNAFP--ATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRAD 679
+ P +TH E PT +LS+VAN+TP+SD+NQSPRNMYQCQM+KQTMG ++ R D
Sbjct: 689 -DLIPGLSTHIEFTPTNILSIVANMTPFSDYNQSPRNMYQCQMSKQTMGTPGTSIAHRTD 747
Query: 680 QKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGM 739
KLY +QT QTPIVR Y YG+D +P G NA+VA+++YTGYDM+DAMI+NKS+ +RG
Sbjct: 748 NKLYRIQTGQTPIVRPPLYNAYGLDNFPNGMNAVVAIISYTGYDMDDAMIINKSAHERGF 807
Query: 740 CHGQIYQTETIDLSDDGNKVDRGQ----KLFR---RNKDAKSLHSVIDSDGLPYVGQMIH 792
HG +Y+T+ + L+D+ ++ + + KLF ++ + + ++ID DG+P++G +
Sbjct: 808 GHGTVYKTKVVTLADNDSRRTKSKREVTKLFGFAPGDEVKEQVRNIIDEDGMPHLGARVK 867
Query: 793 PGEPYCSI----YDKTTNSW-------RTNSRKGSESVFVDYVAVDMKNSKNLP-QKANI 840
G+ + +D ++S+ K +E +VD + + S N P Q +I
Sbjct: 868 EGDKIAAWHNVRFDPASDSYVNVDGVTHYMKYKDAEEGYVDSIRLMGSESGNEPAQSLSI 927
Query: 841 RFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSR----- 895
++R R P+IGDKFSSRHGQKGV SQLWP +DMPFS +GM+PDLIINPHAFPSR
Sbjct: 928 KYRIPRKPVIGDKFSSRHGQKGVLSQLWPAVDMPFS-ESGMQPDLIINPHAFPSRKAPLL 986
Query: 896 --------------MTIAMLLESVAAK 908
MTIA ++ES+A K
Sbjct: 987 LRSKKTHSSNAFPGMTIAQMIESMAGK 1013
>gi|328853401|gb|EGG02540.1| hypothetical protein MELLADRAFT_49804 [Melampsora larici-populina
98AG31]
Length = 1214
Score = 698 bits (1802), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/874 (43%), Positives = 532/874 (60%), Gaps = 41/874 (4%)
Query: 39 RQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKE 98
R+ +Y GK+ A V + L+ G P R FGQ P+MLK+ +C+L+ ++L+ E
Sbjct: 136 RERMATYAGKISAKVSWS-LNNGPPNHEHR-EFGQLPIMLKSEKCNLKQMTPRQLIDHHE 193
Query: 99 EAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSS 158
E+ EMGGYF++NG ER+ R +I+P++N+ ++++R SF +R YT A +RCVR DQSS
Sbjct: 194 ESEEMGGYFLVNGNERLIRFLIVPRRNHAIALIRPSFCNRGNFYTPFACQMRCVRPDQSS 253
Query: 159 VTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLT-CCYDEKYKKEK 217
T+ L+YL NG+V F + EYL+PV ++LKAL+ +D EIF L +D+ ++
Sbjct: 254 QTVTLHYLSNGNVTFRFSWRKNEYLIPVVMLLKALIGASDQEIFAGLAQNAFDDTFR--- 310
Query: 218 GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRD 277
++R++++L ++ L T CL +G F+ V++ S V ++
Sbjct: 311 --------TDRIELLLRSFKNYHLPTSALCLHFLGSKFRIVLNCPDDWSDERVGRFLLDR 362
Query: 278 YIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLE 337
+ VHLN+ K+ LL+FM+QKL++LV +DNPDS Q+QEIL+PGHL++ LKE+ E
Sbjct: 363 VVLVHLNNATSKYRLLLFMIQKLYALVGGECCADNPDSPQHQEILMPGHLLSSILKERFE 422
Query: 338 DWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGL 397
+++ + + ++ +F + ++K M + G I L TG L + TGL
Sbjct: 423 EYIGGIRNQMASDVRRGVASANFRDPKYVQKTMARVDC-DAGKRITYFLATGNLVSPTGL 481
Query: 398 DLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDG 457
DLQQ +G+T+ AE+LNF R+IS FR VHRGA FA L+TT+VRKLLPE+WGFLCPVHTPDG
Sbjct: 482 DLQQMSGFTLIAEKLNFYRYISHFRCVHRGAFFAELKTTTVRKLLPEAWGFLCPVHTPDG 541
Query: 458 EPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVL 517
PCGLLNH C++ S ++ +L +GM V +
Sbjct: 542 SPCGLLNHFAHQCQILSSPSPSSHVP----------ALLTSLGMSQPFDSAVDV--KNYV 589
Query: 518 SVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTS 577
V LDG V+G S K+ LR K IP LEVG+VP GG YPGL+LF++
Sbjct: 590 CVQLDGEVIGWASLSLCFKMATALRLWKTEGLEKIPPGLEVGFVPRVTGGQYPGLFLFST 649
Query: 578 PPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIHPTGM 637
P + +RPV+ IS + ELIGPFEQV+++I C + +TH EI PT +
Sbjct: 650 PARMMRPVQLIS-----NGKTELIGPFEQVYLDIACTES----EIEKGISTHVEISPTHI 700
Query: 638 LSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNT 697
LS++ANLTP+SD NQSPRNMYQCQM+KQTMG A R D KLY LQT QTPIVR
Sbjct: 701 LSLLANLTPFSDFNQSPRNMYQCQMSKQTMGTPSSAFNHRTDNKLYRLQTGQTPIVRPAL 760
Query: 698 YTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGN 757
+ Y +D +P GTNA+VAV++YTGYDMEDAMILNKS +RG HG IY+++ +DL D
Sbjct: 761 HDHYHMDHFPNGTNAVVAVISYTGYDMEDAMILNKSGHERGFGHGTIYKSQIVDLQPDRG 820
Query: 758 KVDRGQKLFRRNKD--AKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKG 815
+ ++ F D K + + +DG+ +G + G+P C+ D+ T KG
Sbjct: 821 R-GSSERHFGLGDDHKLKDMAQHLGADGIAMIGSRLKRGDPLCAYVDRVTGKGGWEKYKG 879
Query: 816 SESVFVDYVAVDMKNSKNLP-QKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMP 874
E FV+ + + +S K + + R R+P+IGDKFSSRHGQKGVCSQ WP +DMP
Sbjct: 880 DEEAFVEEIRLIGNDSSTTECTKIHFKLRIPRSPVIGDKFSSRHGQKGVCSQKWPAVDMP 939
Query: 875 FSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
F+ +GM+PD+IINPHAFPSRMTI M +ES+A K
Sbjct: 940 FT-ESGMQPDVIINPHAFPSRMTIGMFVESLAGK 972
>gi|345564896|gb|EGX47854.1| hypothetical protein AOL_s00083g9 [Arthrobotrys oligospora ATCC
24927]
Length = 1189
Score = 698 bits (1802), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/899 (42%), Positives = 550/899 (61%), Gaps = 76/899 (8%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR+ SY G+L +E QY +E + G P+M+ RCHL+ + LV K
Sbjct: 121 CRERHSSYRGQL--QLELQYKVNNGDWQKEYRDCGLLPLMVMGNRCHLESMSPRSLVDHK 178
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
EE+ E+GGYFI++G E++ R +I+ ++NY M+++RSS+ R YT+ V IRCVR DQS
Sbjct: 179 EESEEIGGYFIVSGNEKLVRMLIVNRRNYAMAVIRSSYAKRGPSYTNMGVQIRCVRPDQS 238
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
+T ++YL +G++ F + +EYL+PV ++LKALVDTND EI+ +
Sbjct: 239 CMTNVIHYLSDGNITFRFSWRKREYLVPVMMILKALVDTNDREIY--------------E 284
Query: 218 GAVG-----SPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAE 272
G VG +++RV+++L + +L +R + L ++G+ F+ V+ S V +
Sbjct: 285 GIVGLDQREDTFLTDRVELLLRTYKAYNLYSRHETLAYLGDKFRIVMQVSPDVSDVEVGK 344
Query: 273 TVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYL 332
++ + V+LND+ DK L+FM++KL+SLV T +DN D+ Q+ E+LL G L L
Sbjct: 345 LFLKRIVLVYLNDDGDKQRQLLFMIKKLYSLVAGTCAADNVDAAQHHEVLLGGFLYGQIL 404
Query: 333 KEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLA 392
KEK E++L + ++ ++ G K +F + I+K++ K +++IG S+ L TG L+
Sbjct: 405 KEKFEEYLLNIRSQVRSDLMG-GAKVEFGSPQYIRKMLGK-VNERIGESLHYFLSTGNLS 462
Query: 393 TQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPV 452
+ +GLDLQQ G+TV AE+LNF R+IS FR VHRG+ FA L+TT+VRKLLPESWGFLCPV
Sbjct: 463 SPSGLDLQQTTGFTVVAEKLNFYRYISHFRMVHRGSFFAQLKTTTVRKLLPESWGFLCPV 522
Query: 453 HTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSG 512
HTPDG PCGLLNH+ CR+A+ D S++ +L + + + +P
Sbjct: 523 HTPDGSPCGLLNHLAHKCRIATI------TSDTSQVGPLVLTLGVHSAKVLPVPT----- 571
Query: 513 PPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGL 572
A LSV LDGR++G + +V LR KVS +P DLE+GYVP S GG YPG+
Sbjct: 572 -DATLSVQLDGRILGWCSPRDARRVAESLRFYKVSGTHNVPLDLEIGYVPTSNGGQYPGV 630
Query: 573 YLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPD----GGDGGRRNAFPAT 628
YLF+ + +RPV+ + L E+ +GPFEQ F+ I D GD +
Sbjct: 631 YLFSQEARMIRPVKYLPLDKED-----FVGPFEQPFLNIAVTDPEIKSGD---------S 676
Query: 629 HEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTP 688
H E PT +LS+VAN+TP+SD NQSPRNMYQCQM KQTMG A++ R D K+Y LQT
Sbjct: 677 HVEFDPTNILSIVANMTPFSDFNQSPRNMYQCQMGKQTMGTPGTAIRHRTDNKMYRLQTG 736
Query: 689 QTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTE 748
Q+P+VR Y YG+D +P G NA+VAV+AYTGYDM+DAMI+NKS+ +RG +G +Y+TE
Sbjct: 737 QSPVVRAPLYNTYGLDNFPNGMNAVVAVIAYTGYDMDDAMIINKSAHERGFGYGTVYKTE 796
Query: 749 TIDLSDDGNK----------------VDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIH 792
DL++ ++ KD S ++ D DGLP VGQ I
Sbjct: 797 KYDLAEKSKSKSPVLAFGWGWAAIGADAAALAKYKAMKDKYS-ETLDDMDGLPMVGQKIV 855
Query: 793 PGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAV---DMKNSKNLPQKANIRFRHTRNPI 849
G+P ++ T KGSE +++ V + D+ +S + Q +++FR TR+P+
Sbjct: 856 EGQPVAVYHNMGTGETFFFKYKGSEDAYIEEVRLLGNDVGDS--ICQAISVKFRITRSPL 913
Query: 850 IGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
IGDKFSSRHGQKGVCSQ WP +DMPFS +G++PD+IINPHAFPSRMTI M +ES+A K
Sbjct: 914 IGDKFSSRHGQKGVCSQKWPAVDMPFS-ESGIQPDVIINPHAFPSRMTIGMFVESMAGK 971
>gi|255718993|ref|XP_002555777.1| KLTH0G17160p [Lachancea thermotolerans]
gi|238937161|emb|CAR25340.1| KLTH0G17160p [Lachancea thermotolerans CBS 6340]
Length = 1197
Score = 698 bits (1801), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/882 (43%), Positives = 551/882 (62%), Gaps = 51/882 (5%)
Query: 39 RQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKE 98
RQ SY GKL+ + + ++ G E + G PVML++ RCHL +LV KE
Sbjct: 122 RQRLSSYRGKLLLKLRWA-INDGEESFTEIRDCGGLPVMLQSNRCHLNKLSPNELVKHKE 180
Query: 99 EAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSS 158
E+ E+GGYFI+NG+E++ R +I+ ++N+PM+++R SF +R Y+ + IR VR DQ+S
Sbjct: 181 ESDELGGYFIINGIEKLIRMLIVQRRNHPMAIIRPSFANRGASYSQYGIQIRSVRPDQTS 240
Query: 159 VTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKG 218
T L+YL +G V F + EYL+PV ++LKAL + ND EIF+ G
Sbjct: 241 QTNVLHYLNDGEVTFRFSWRKNEYLIPVVMILKALCELNDREIFD--------------G 286
Query: 219 AVGS----PLVSERVKIILA--EVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAE 272
VGS +++R++++L + + L R Q LQ++G+ F+ V+ + + V E
Sbjct: 287 IVGSDTSNSFLTDRLELLLRGHKKKYGELHNRRQVLQYLGDKFRVVLQASPDATDFQVGE 346
Query: 273 TVIRDYIFVHLNDNN-DKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIY 331
+++ + VHL D+N DK +L+FM++KL+SLV DNPD+ Q+QE+LL G L +
Sbjct: 347 ELLKRIVLVHLGDSNEDKSRMLLFMIRKLYSLVAGECSPDNPDATQHQEVLLGGFLYGMI 406
Query: 332 LKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRL 391
+KEK+E++L+ K IQ ++ N G +F + +V+ + ++ IG+ ++ L TG L
Sbjct: 407 IKEKIEEYLQNIKLQIQSDV-NRGLAVNFKERKYMTRVLMR-VNENIGSKLQYFLSTGNL 464
Query: 392 ATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCP 451
+Q+GLDLQQ +GYTV AE++NF RFIS FR VHRG+ FA L+TT+VRKLLPESWGFLCP
Sbjct: 465 VSQSGLDLQQVSGYTVVAEKINFYRFISHFRMVHRGSFFAQLKTTTVRKLLPESWGFLCP 524
Query: 452 VHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKS 511
VHTPDG PCGLLNH C++++ S+ ++ + I +L +G+ P+
Sbjct: 525 VHTPDGSPCGLLNHFAHKCKIST---SQSDV-------SRIPSLLYSLGVAPASHTFTAG 574
Query: 512 GPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASV-IPDDLEVGYVPLSLGGAYP 570
P + V LDG++VG + + + LR KV + +P DLE+GYVP S G YP
Sbjct: 575 --PTMCCVQLDGKIVGWCSHEQGKIIADTLRFWKVEGETPGLPLDLEIGYVPPSSRGQYP 632
Query: 571 GLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHE 630
GLYLF + +RPV+ + L E+ ++GPFEQV+M I + TH
Sbjct: 633 GLYLFGGHSRMMRPVKYLPLGKED-----IVGPFEQVYMNIAVTPKEIQNNTH----THV 683
Query: 631 EIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQT 690
E PT +LS++ANLTP+SD NQSPRNMYQCQM KQTMG AL R+D KLY LQT QT
Sbjct: 684 EFTPTNILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGVALCHRSDNKLYRLQTGQT 743
Query: 691 PIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETI 750
PIV+ N Y +YG+D +P G NA+VAV++YTGYDM+DAMI+NKS+ +RG+ +G +Y+ E +
Sbjct: 744 PIVKANLYDEYGMDNFPNGFNAVVAVISYTGYDMDDAMIINKSADERGLGYGTMYKVEKV 803
Query: 751 DLSDDGNKVDRGQKLFRRNKDA--KSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSW 808
DL+ + ++ D + F D K+ +D DGLP +G + G+P C+ +D T N
Sbjct: 804 DLALNRSRGDPITQHFGFGDDEWPKNWLDKLDDDGLPMIGTYVEEGDPICAFFDDTLNKT 863
Query: 809 RTNSRKGSESVFVDYVAVDMKNSKNLP--QKANIRFRHTRNPIIGDKFSSRHGQKGVCSQ 866
+ + SE +++ V + S Q +I++R R P IGDKFSSRHGQKGVCS+
Sbjct: 864 KIKTYHSSEPAYIEEVNLIGDESSKFQELQTVSIKYRIRRTPQIGDKFSSRHGQKGVCSR 923
Query: 867 LWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
WP +DMPFS +GM+PD+IINPHAFPSRMTI M +ES+A K
Sbjct: 924 KWPTVDMPFS-ESGMQPDIIINPHAFPSRMTIGMFVESLAGK 964
>gi|400595618|gb|EJP63410.1| RNA polymerase Rpb2 [Beauveria bassiana ARSEF 2860]
Length = 1229
Score = 698 bits (1801), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 388/902 (43%), Positives = 550/902 (60%), Gaps = 68/902 (7%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGS-PVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
CR+ ++Y G+L A E+ S VR+ GQ P+MLK+ RCHL+ LV
Sbjct: 118 CRERHVTYRGRLSATFEYNINGGDSHEFVRD---LGQIPIMLKSNRCHLENNSPALLVQR 174
Query: 97 KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQ 156
KEE+ E+GGYF++NG+E++ R + L K+N+PM++ R SF++R GY+ ++IR VR D+
Sbjct: 175 KEESEELGGYFVVNGIEKIIRMLQLNKRNFPMAINRPSFQNRGPGYSPYGIIIRSVRPDE 234
Query: 157 SSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKE 216
+S T L+YL +G+V F + EYL+PV +++KALV+TND EIF L K
Sbjct: 235 TSQTNVLHYLNDGNVTFRFSWRKNEYLVPVIMIMKALVETNDREIFEGLIGPMGSK---- 290
Query: 217 KGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIR 276
A G+ +++RV+++L + L ++ + ++G+ F+ V+ ++ S Y V +R
Sbjct: 291 --ATGNTFLTDRVELLLRTYKSYGLYSKSETRAYLGQKFRVVLGVPETMSDYDVGTEFLR 348
Query: 277 DYIFVHLND-------NNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
VHL + ++DKF +L+FM++KL++LV DNPD++QNQEILL G L
Sbjct: 349 RIALVHLGNVKVTEKQDDDKFKMLLFMVRKLYALVAGECAVDNPDAIQNQEILLGGFLYG 408
Query: 330 IYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKK---VMEKNPSKQIGTSIETML 386
LKE+L+++L G +L E F + K+ + + ++ +GTSIE L
Sbjct: 409 QILKERLDEFLGVGVRLSLREYFRRHPSVTFHSEEFRKEFPTAIFRKANENLGTSIEYFL 468
Query: 387 KTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESW 446
TG L + +GLDLQQ AG+TV AE+LNFLRFI+ FR VHRGA FA L+TT+VRKLLPESW
Sbjct: 469 STGNLVSPSGLDLQQVAGFTVVAEKLNFLRFIAHFRMVHRGAFFAQLKTTTVRKLLPESW 528
Query: 447 GFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLP 506
GF+CPVHTPDG PCGLLNH+ C++ + + D SK+ G++ L
Sbjct: 529 GFMCPVHTPDGAPCGLLNHLAHKCKIMTDHI------DVSKV----------PGLVAELG 572
Query: 507 KLVKSGPPAVLSV--LLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLS 564
+ S SV +LDG+V+G E ++ LR KV +P LE+GYVP S
Sbjct: 573 AVDTSTASTAESVVIMLDGKVLGWCKPKESLRMADCLRHWKVEGNRGVPLHLEIGYVPPS 632
Query: 565 LGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRN 623
GG+YPG+Y+ ++P + +RPV+ + L E+ ++GP+EQ +M I P+ + G
Sbjct: 633 TGGSYPGIYMTSTPSRMIRPVKYLPLQKED-----MVGPYEQPYMSIAVVPEEIESGL-- 685
Query: 624 AFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLY 683
+TH E PT +LS++AN+TP+SD NQSPRNMYQCQM KQTMG AL R D K Y
Sbjct: 686 ---STHVEFDPTNILSILANMTPFSDFNQSPRNMYQCQMGKQTMGTPGTALVHRTDNKSY 742
Query: 684 HLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQ 743
LQT QTPIVR + YG D +P GTN IVAV++YTGYDM+DAMI+NKS+ +RG HG
Sbjct: 743 RLQTGQTPIVRAPLHNAYGFDNFPNGTNVIVAVISYTGYDMDDAMIINKSAHERGFGHGT 802
Query: 744 IYQTETIDLSDD-----GNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYC 798
+Y+T+ I L DD V + + + S ++D DGLP+VG+++ G+ C
Sbjct: 803 VYKTKKISLKDDSRTRASKSVTKAFGFAPHSYVSASYQGMLDDDGLPHVGRLVQEGDVIC 862
Query: 799 SIYDKTTNSWRTN-----------SRKGSESVFVDYV-AVDMKNSKNLPQKANIRFRHTR 846
+ + T +R + K E+ FV+ V + + L Q +I+FR R
Sbjct: 863 A-WHTVTPDYRGDLVNLDGITHYEKYKDGETGFVEEVRLIGADSGSELLQTISIKFRIPR 921
Query: 847 NPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVA 906
P+IGDKFSSRHGQKGVCSQ WP IDMPFS +GM+PD+IINPHAFPSRMTI M +ES+A
Sbjct: 922 APLIGDKFSSRHGQKGVCSQKWPAIDMPFS-ESGMQPDVIINPHAFPSRMTIGMFVESLA 980
Query: 907 AK 908
K
Sbjct: 981 GK 982
>gi|322709186|gb|EFZ00762.1| DNA-directed RNA polymerase I 135 kDa polypeptide [Metarhizium
anisopliae ARSEF 23]
Length = 1231
Score = 698 bits (1801), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 389/906 (42%), Positives = 549/906 (60%), Gaps = 76/906 (8%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPV--VRERFNFGQFPVMLKTRRCHLQGADSQKLVS 95
CR+ +SY G+L A E+ ++ G P+ VRE GQ P+M+K+ RCHL+ +LV
Sbjct: 118 CRERHVSYRGRLSATFEYS-INGGEPIEFVRE---LGQVPIMIKSNRCHLENNSPAQLVQ 173
Query: 96 LKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKD 155
KEE+ E+GGYFI+NG+E++ R + + K+N+PM++ R SF+ R GYT V++R VR D
Sbjct: 174 RKEESEELGGYFIVNGIEKIIRLLQVNKRNFPMAINRPSFQSRGAGYTSYGVIVRSVRPD 233
Query: 156 QSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKK 215
++S T L+YL +G++ + EYL+PV ++LKALV+TND EIF L K +
Sbjct: 234 ETSQTNVLHYLNDGNITFRISWRKNEYLIPVIMILKALVETNDREIFEGLIGPMGSKVTE 293
Query: 216 EKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVI 275
+ +++RV+++L + L ++ Q ++GE F+ V+ ++ S Y V +
Sbjct: 294 ------NTFLTDRVELLLRTYKSYGLYSKSQTRAYLGEKFRVVLGVPETMSDYEVGTEFL 347
Query: 276 RDYIFVHLNDNN-------DKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLI 328
R + VHL + N DKF +L+FM++KL++L DNPD+LQNQEILL G L
Sbjct: 348 RRIVLVHLGNVNVTEEQDLDKFRMLLFMVRKLYALAAGECAVDNPDALQNQEILLGGFLY 407
Query: 329 TIYLKEKLEDWLRKG-----KKLIQDEIENNGKKFDF---FNLANIKKVMEKNPSKQIGT 380
LKE+L+++L G + ++ E DF F A KK E +G
Sbjct: 408 GQILKERLDEFLSVGVRSSLRDFLRRHPEVPFTSEDFRKEFPGAIFKKANE-----NLGN 462
Query: 381 SIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRK 440
++E L TG L + +GLDLQQ AG+TV AE+LNFLRFIS FR VHRGA FA LRTT+VRK
Sbjct: 463 ALEYFLSTGNLQSPSGLDLQQTAGFTVVAEKLNFLRFISHFRMVHRGAFFAQLRTTAVRK 522
Query: 441 LLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVG 500
LLPESWGF+CPVHTPDG PCGLLNH+ C++ + + D SK+ + + G
Sbjct: 523 LLPESWGFMCPVHTPDGSPCGLLNHLAHKCKIVTDH------VDASKLPALVKEL----G 572
Query: 501 MIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGY 560
++ + L + V++DG+++G E ++ LR KV +P LE+GY
Sbjct: 573 VVDTSSALTSDN----VVVMMDGKILGWCTPKESLRIADCLRYWKVEGTHGVPLQLEIGY 628
Query: 561 VPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDG 619
VP+S GG+YPG+Y+ ++P + VRPV+ + L E+ +GP+EQ +M I P +
Sbjct: 629 VPVSNGGSYPGVYITSTPARMVRPVKYLPLQKED-----FVGPYEQPYMSIAVLPQEIES 683
Query: 620 GRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRAD 679
G +TH E PT MLS++AN+TP+SD NQSPRNMYQCQM KQTMG A+++R D
Sbjct: 684 GV-----STHVEFDPTNMLSILANMTPFSDFNQSPRNMYQCQMGKQTMGTPGAAIRYRTD 738
Query: 680 QKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGM 739
K Y +QT QTPIVR + YG D +P G NA+VAV++YTGYDM+DAMILNKS+ +RG
Sbjct: 739 NKSYRIQTGQTPIVRAPLHNDYGFDNFPNGMNAVVAVISYTGYDMDDAMILNKSAHERGF 798
Query: 740 CHGQIYQTETIDLSDD-----GNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPG 794
HG IY+T+ I L DD V + + + S ++D DGLP+VG+++ G
Sbjct: 799 GHGTIYKTKKITLKDDSRTRAAKSVTKAFGFAPHSYVSASYQGMLDDDGLPHVGRLVQEG 858
Query: 795 EPYCSIYDKTTNSWRTN-----------SRKGSESVFVDYV-AVDMKNSKNLPQKANIRF 842
+ C+ + T + N K E+ FV+ V + Q +I+F
Sbjct: 859 DVICA-WHTVTPDYNGNLVNLDGITHYEKYKDGETGFVEEVRLIGADTGGETLQTVSIKF 917
Query: 843 RHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLL 902
R R+PIIGDKFSSRHGQKGV SQ WP IDMPFS +G++PD+IINPHAFPSRMTI M +
Sbjct: 918 RIPRSPIIGDKFSSRHGQKGVASQKWPAIDMPFS-ESGIQPDVIINPHAFPSRMTIGMFV 976
Query: 903 ESVAAK 908
ES+A K
Sbjct: 977 ESLAGK 982
>gi|340378888|ref|XP_003387959.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 [Amphimedon
queenslandica]
Length = 1143
Score = 698 bits (1801), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 386/948 (40%), Positives = 554/948 (58%), Gaps = 92/948 (9%)
Query: 10 EPLRELVRHHIESFDYMLDEGLS---------EMFD------------------------ 36
E L+ L RHHIE+FD+ +DEGL E+ D
Sbjct: 35 ESLQALTRHHIEAFDFAVDEGLKYAVEDLRSRELLDPRGQKVEIFIENAEIGYPTLPESN 94
Query: 37 -----------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHL 85
CR+ +SY LM V F + S V GQ P+M+K+ RC L
Sbjct: 95 IHVKSVNIYPSECRERGVSYKAPLMLTVTF--MIEKSIVNTVNVPMGQVPIMVKSNRCRL 152
Query: 86 QGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDK 145
G ++LV EE+ EMGGYFI+NG E++ R +I+P++NYP++++R S+ + T+
Sbjct: 153 YGMSPEELVKHHEESEEMGGYFIINGNEKLLRMLIMPRRNYPIAIIRPSWIGKVPFSTEY 212
Query: 146 AVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHL 205
+RCV+KDQ+ + L+Y NGS+ L F +++ + + +LKAL+ +DL IF +
Sbjct: 213 GCTMRCVKKDQTQCNMTLHYCSNGSLTLAFSRNKEQFYMSIIYILKALISVSDLFIFTEM 272
Query: 206 TCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSE 265
T KG + V +L + Q LT R L+++G+ F+ +
Sbjct: 273 T----------KGKEDDAFLKGCVAAMLHDCQTEVLT-RADALRYLGDRFRFKFNLPPWV 321
Query: 266 SYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPG 325
+ + +IR++I VHL+ N DKFN+LIFM +K ++L + +++ DS NQEILL G
Sbjct: 322 TAEEICHELIRNHICVHLDKNTDKFNMLIFMARKTYALANGQCMAETADSPMNQEILLGG 381
Query: 326 HLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFN-LANIKKVMEKNPSKQIGTSIET 384
HL +YLK +L L ++ GK FF + +K+++E + I T +ET
Sbjct: 382 HLYLMYLKVQLLLSLVSLLLFVK------GKDGGFFEETSALKRILEPKKTVPIATIMET 435
Query: 385 MLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPE 444
L TG L T TGL+LQQ +G+++ A++LNF R+IS FRAVHRGA FA +++T VRKLLPE
Sbjct: 436 FLATGYLRTNTGLNLQQMSGFSIVADKLNFFRYISHFRAVHRGAFFAQMKSTEVRKLLPE 495
Query: 445 SWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPS 504
+WGF+CPVH+PDG PCGLLNH++S C+V + + N+R K+ +S+ GMIP
Sbjct: 496 AWGFICPVHSPDGAPCGLLNHLSSKCQVVT---TIPNVRKLPKLLSSL-------GMIPL 545
Query: 505 LPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLS 564
+ L + L V+L+GRV+GV+ SS+ + V LR LK + +P LE+GYVPLS
Sbjct: 546 VSPLEVPSSSSALDVILNGRVLGVVKSSDTPRFVRQLRHLKATRTQEVPSTLEIGYVPLS 605
Query: 565 LGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNA 624
GG +PG++LFT+P + +RPV N++ + +ELIG FEQV+M+I + +
Sbjct: 606 KGGQFPGIFLFTTPSRMMRPVINLA-----TNTMELIGSFEQVYMDIAVSES------DI 654
Query: 625 FP--ATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKL 682
P TH+E+ +LS VA+LTP++D N SPRN+YQCQMAKQTMG + R D KL
Sbjct: 655 HPNVTTHKEVSDDSILSAVASLTPFTDFNPSPRNIYQCQMAKQTMGTPTHSFGHRGDNKL 714
Query: 683 YHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHG 742
Y LQTPQTP+VRT Y + +D YP GTNAIVAV+AYTGYDMEDA+++N++S++RG H
Sbjct: 715 YRLQTPQTPLVRTKFYDECDLDNYPLGTNAIVAVIAYTGYDMEDAIVINRASLERGFTHA 774
Query: 743 QIYQTETIDLSDDGNKVDRGQKL-FRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIY 801
+Y+ E IDLS N DR F K + +D DGLP+VG ++ +P S
Sbjct: 775 TVYKNEFIDLSKKAN--DRNTMYQFGTLPSNKIAYERLDEDGLPHVGSLLEEDDPLYSYI 832
Query: 802 DKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLP-QKANIRFRHTRNPIIGDKFSSRHGQ 860
D +N K E +V+ V + + P ++ +I+ R RNP IGDKF+SRHGQ
Sbjct: 833 DLASNRVHVERYKSREPAYVEEVKLLGSEKGDRPLERVSIKLRLNRNPAIGDKFASRHGQ 892
Query: 861 KGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
KGV S WP D+PF +GM PD+I NPH FPSRMT+ M +ES+A K
Sbjct: 893 KGVLSWQWPVEDLPFCE-SGMVPDIIFNPHGFPSRMTVGMWVESMAGK 939
>gi|240278168|gb|EER41675.1| DNA-directed RNA polymerase I [Ajellomyces capsulatus H143]
Length = 1242
Score = 697 bits (1800), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 389/908 (42%), Positives = 548/908 (60%), Gaps = 75/908 (8%)
Query: 37 HCRQAKISYTGKLMADVEFQYLDA-GSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVS 95
CR+ +Y G+L A +E++ + VRE GQ P+ML++ RCHL+ ++LV
Sbjct: 126 ECRERHATYRGRLRARLEYRVNNGEWKESVRE---LGQVPIMLRSNRCHLEKCSPEQLVQ 182
Query: 96 LKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKD 155
KEE+ E+GGYFI+NG E++ R +I+ ++N+PM+++RSSF R + YT + IR VR D
Sbjct: 183 RKEESEELGGYFIVNGNEKLIRMLIVGRRNFPMAIIRSSFTKRGQTYTKYGIQIRSVRTD 242
Query: 156 QSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKK 215
Q+S T L+YL +G+V F + EYL+PV ++LKALV+TND EIF L ++
Sbjct: 243 QTSQTNVLHYLSDGNVTFRFSWRKNEYLVPVVMILKALVETNDREIFERLVG------RE 296
Query: 216 EKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVI 275
+ + V++RV+++L + L R ++GE F+PV+ V +
Sbjct: 297 GSEGIKNSFVTDRVELLLRTYKGYKLYGRDDTRAYLGEKFRPVLGMPADIPDDMVGAEFL 356
Query: 276 RDYIFVHLND-------NNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLI 328
R + HL + +NDKFN+++FM++KL++LV DNPD++ NQE+LL G L
Sbjct: 357 RKVVLPHLGNQNVTESQDNDKFNMILFMIRKLYTLVAGECAPDNPDAVSNQEVLLGGSLY 416
Query: 329 TIYLKEKLEDWLRKGKKLIQD-EIENNGKKFD--FFNLANIKKVMEKNPSKQIGTSIETM 385
+ LKE+LE+WLR + +D N +F F + +++ + ++ IG ++E
Sbjct: 417 GMLLKERLEEWLRAFGPIARDWSFRNQNARFSDPRFEKEFLSRIVSRT-NENIGGALEYF 475
Query: 386 LKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPES 445
L TG L + TGLDLQQ +GYTV AE++NF RFIS FR +HRG+ FA L+TT+VRKLLPES
Sbjct: 476 LSTGNLVSPTGLDLQQPSGYTVIAEKINFYRFISHFRMIHRGSFFAQLKTTTVRKLLPES 535
Query: 446 WGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSL 505
WGFLCPVHTPDG PCGLLNH+ C++A+ N+ D S + I + + SL
Sbjct: 536 WGFLCPVHTPDGSPCGLLNHLAHECKIAT-----SNL-DVSGVPQVISDLGVTYESSVSL 589
Query: 506 PKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSL 565
+ V V LDGR++G + + LR KV+ +P +LE+GY+P S
Sbjct: 590 DESV--------VVQLDGRILGYCSPKQARMISDTLRYWKVAGNKSLPVELEIGYIPNSN 641
Query: 566 GGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRNA 624
G YPG+Y+F+ + +RPV+ + L ++ +GPFEQ FMEI C P G
Sbjct: 642 RGQYPGIYIFSQCARMMRPVKYLPL-----DKLDYVGPFEQPFMEIACVPSDIMSG---- 692
Query: 625 FPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYH 684
+TH E PT +LS+VAN+TP+SD NQSPRNMYQCQM+KQ MG ++++R D KLY
Sbjct: 693 -ISTHVEFDPTHILSIVANMTPFSDFNQSPRNMYQCQMSKQAMGTPGASIEYRTDNKLYR 751
Query: 685 LQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQI 744
LQT QTP+VRT Y YG+D +P G NA+VAVL+YTGYDM+DAMI+NKS+ DRG G I
Sbjct: 752 LQTGQTPVVRTPLYNSYGLDNFPNGMNAVVAVLSYTGYDMDDAMIINKSAHDRGFGWGTI 811
Query: 745 YQTETIDLSDDGNKVDRGQKLFRRNKD-----------AKSLHSVIDSDGLPYVGQMIHP 793
Y+T+ L D K RG+ RR +D DGLP++G +
Sbjct: 812 YKTKIYSLDD---KESRGRGKARREVSKLFGFAPGSLIKGEWRHALDEDGLPHIGARVTE 868
Query: 794 GEPYCSI----YDKTTNSWRTN--------SRKGSESVFVDYVAVDMKNSKNLP-QKANI 840
G + +D +NS+ TN K +E ++D V + + P Q ++
Sbjct: 869 GSIVAAWHTVRFDPVSNSY-TNIDGQTHLLKYKDTEEGYIDNVRIFGSETGGDPCQAISV 927
Query: 841 RFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAM 900
+FR R P+IGDKFSSRHGQKGVCSQLWP IDMPFS TG++PD+IINPHAFPSRMTI M
Sbjct: 928 KFRVPRKPVIGDKFSSRHGQKGVCSQLWPAIDMPFS-ETGIQPDIIINPHAFPSRMTIGM 986
Query: 901 LLESVAAK 908
+ES+A K
Sbjct: 987 FIESLAGK 994
>gi|325096233|gb|EGC49543.1| DNA-directed RNA polymerase I [Ajellomyces capsulatus H88]
Length = 1242
Score = 697 bits (1799), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 388/908 (42%), Positives = 548/908 (60%), Gaps = 75/908 (8%)
Query: 37 HCRQAKISYTGKLMADVEFQYLDA-GSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVS 95
CR+ +Y G+L A +E++ + VRE GQ P+ML++ RCHL+ ++LV
Sbjct: 126 ECRERHATYRGRLRARLEYRVNNGEWKESVRE---LGQVPIMLRSNRCHLEKCSPEQLVQ 182
Query: 96 LKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKD 155
KEE+ E+GGYFI+NG E++ R +I+ ++N+PM+++RSSF R + YT + IR VR D
Sbjct: 183 RKEESEELGGYFIVNGNEKLIRMLIVGRRNFPMAIIRSSFTKRGQTYTKYGIQIRSVRTD 242
Query: 156 QSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKK 215
Q+S T L+YL +G+V F + EYL+PV ++LKALV+TND EIF L ++
Sbjct: 243 QTSQTNVLHYLSDGNVTFRFSWRKNEYLVPVVMILKALVETNDREIFERLVG------RE 296
Query: 216 EKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVI 275
+ + V++RV+++L + L R ++GE F+PV+ V +
Sbjct: 297 GSEGIKNSFVTDRVELLLRTYKGYKLYGRDDTRAYLGEKFRPVLGMPADIPDDMVGAEFL 356
Query: 276 RDYIFVHLND-------NNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLI 328
R + HL + +NDKFN+++FM++KL++LV DNPD++ NQE+LL G L
Sbjct: 357 RKVVLPHLGNQNVTESQDNDKFNMILFMIRKLYTLVAGECAPDNPDAVSNQEVLLGGSLY 416
Query: 329 TIYLKEKLEDWLRKGKKLIQD-EIENNGKKFD--FFNLANIKKVMEKNPSKQIGTSIETM 385
+ LKE+LE+WLR + +D N +F F + +++ + ++ IG ++E
Sbjct: 417 GMLLKERLEEWLRAFGPIARDWSFRNQNARFSDPRFEKEFLSRIVSRT-NENIGGALEYF 475
Query: 386 LKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPES 445
L TG L + TGLDLQQ +GYT+ AE++NF RFIS FR +HRG+ FA L+TT+VRKLLPES
Sbjct: 476 LSTGNLVSPTGLDLQQPSGYTIIAEKINFYRFISHFRMIHRGSFFAQLKTTTVRKLLPES 535
Query: 446 WGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSL 505
WGFLCPVHTPDG PCGLLNH+ C++A+ N+ D S + I + + SL
Sbjct: 536 WGFLCPVHTPDGSPCGLLNHLAHECKIAT-----SNL-DVSGVPQVISDLGVTYESSVSL 589
Query: 506 PKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSL 565
+ V V LDGR++G + + LR KV+ +P +LE+GY+P S
Sbjct: 590 DESV--------VVQLDGRILGYCSPKQARMISDTLRYWKVAGNKSLPVELEIGYIPNSN 641
Query: 566 GGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRNA 624
G YPG+Y+F+ + +RPV+ + L ++ +GPFEQ FMEI C P G
Sbjct: 642 RGQYPGIYIFSQCARMMRPVKYLPL-----DKLDYVGPFEQPFMEIACVPSDIMSG---- 692
Query: 625 FPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYH 684
+TH E PT +LS+VAN+TP+SD NQSPRNMYQCQM+KQ MG ++++R D KLY
Sbjct: 693 -ISTHVEFDPTHILSIVANMTPFSDFNQSPRNMYQCQMSKQAMGTPGASIEYRTDNKLYR 751
Query: 685 LQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQI 744
LQT QTP+VRT Y YG+D +P G NA+VAVL+YTGYDM+DAMI+NKS+ DRG G I
Sbjct: 752 LQTGQTPVVRTPLYNSYGLDNFPNGMNAVVAVLSYTGYDMDDAMIINKSAHDRGFGWGTI 811
Query: 745 YQTETIDLSDDGNKVDRGQKLFRRNKD-----------AKSLHSVIDSDGLPYVGQMIHP 793
Y+T+ L D K RG+ RR +D DGLP++G +
Sbjct: 812 YKTKIYSLDD---KESRGRGKARREVSKLFGFAPGSLIKGEWRHALDEDGLPHIGARVTE 868
Query: 794 GEPYCSI----YDKTTNSWRTN--------SRKGSESVFVDYVAVDMKNSKNLP-QKANI 840
G + +D +NS+ TN K +E ++D V + + P Q ++
Sbjct: 869 GSIVAAWHTVRFDPVSNSY-TNIDGQTHLLKYKDTEEGYIDNVRIFGSETGGDPCQAISV 927
Query: 841 RFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAM 900
+FR R P+IGDKFSSRHGQKGVCSQLWP IDMPFS TG++PD+IINPHAFPSRMTI M
Sbjct: 928 KFRVPRKPVIGDKFSSRHGQKGVCSQLWPAIDMPFS-ETGIQPDIIINPHAFPSRMTIGM 986
Query: 901 LLESVAAK 908
+ES+A K
Sbjct: 987 FIESLAGK 994
>gi|58268448|ref|XP_571380.1| DNA-directed RNA polymerase i polypeptide 2 [Cryptococcus
neoformans var. neoformans JEC21]
gi|134112740|ref|XP_774913.1| hypothetical protein CNBF0780 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50257561|gb|EAL20266.1| hypothetical protein CNBF0780 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57227615|gb|AAW44073.1| DNA-directed RNA polymerase i polypeptide 2, putative [Cryptococcus
neoformans var. neoformans JEC21]
Length = 1193
Score = 697 bits (1798), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 371/879 (42%), Positives = 539/879 (61%), Gaps = 44/879 (5%)
Query: 39 RQAKISYTGKLMADVEFQYLD--AGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
R+ +Y KL ++++ D E G PVM+++ RC+LQG + +L+
Sbjct: 131 RERLATYRSKLTVNIKWTVTDEDGNRKEFEEIKECGLLPVMVRSIRCNLQGLPATELIKH 190
Query: 97 KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQ 156
EE+ GGYFI+NG E++ R +++P+++ P+++ R SF R YT IRCVR D+
Sbjct: 191 SEESTSFGGYFIVNGNEKIIRYLVVPRRHNPINLYRPSFAKRGASYTPYGCQIRCVRPDE 250
Query: 157 SSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKE 216
++ T ++YL NG L F + EY++P+ ++LKALVD +D EIF L
Sbjct: 251 TACTNTIHYLSNGGATLRFAWRKVEYMIPLMLILKALVDASDKEIFEGLI---------- 300
Query: 217 KGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIR 276
+G + +++RV+++L + L T QCL ++GE F+ V++ S V ++R
Sbjct: 301 QGEYDNTFLTDRVELLLRGQKSWGLHTGAQCLDYLGEKFRVVLNVPDDWSNVQVGGYLLR 360
Query: 277 DYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKL 336
+ VHL DKF +L+FML+KL+S V + DNPDS Q+ E+LLPG L + +KE+
Sbjct: 361 KVVLVHLPAPRDKFRMLLFMLRKLYSQVSGATCPDNPDSPQHHEVLLPGFLYGMIIKERF 420
Query: 337 EDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTG 396
+D L K IQ ++ + GK F + V+ K + IG+ + L TG L + TG
Sbjct: 421 DDCLNAVKSQIQLDLRD-GKARSFMDPKYFTSVLSKT-NWDIGSKLSYFLATGNLVSPTG 478
Query: 397 LDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPD 456
LDLQQ +G+T+ AE+LNF R++S FR +HRGA FA L+TT+VRKL+PESWGFLCPVHTPD
Sbjct: 479 LDLQQTSGFTIVAEKLNFYRYLSHFRCIHRGAFFAELKTTTVRKLMPESWGFLCPVHTPD 538
Query: 457 GEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGV-GMIPSLPKLVKSGPPA 515
G PCGLLNH++ TC++ + S + S + L+ GM +
Sbjct: 539 GSPCGLLNHLSHTCQIVT-----------SSLDVSHIPALLSAQGMTQVFASSIDG--RR 585
Query: 516 VLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLF 575
++ + LDG+V+G + +++ LR+LK A S +P DLE+GYVP++ GG YPGLYLF
Sbjct: 586 MVCIQLDGKVIGYASPMKAKQLANRLRKLKTEADSKVPLDLEIGYVPVTKGGQYPGLYLF 645
Query: 576 TSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIHPT 635
S + +RPV + E+ ++ +G FEQV+M++ ++H E+ PT
Sbjct: 646 ASRSRMMRPVTYL-----ENGKLDHLGSFEQVYMDVAITKE----EIEKGVSSHVELDPT 696
Query: 636 GMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRT 695
MLSV+AN+TP+SD NQSPRNMYQCQM KQ+MG A+ R D K+Y LQ+ QTP+VR
Sbjct: 697 SMLSVIANMTPFSDFNQSPRNMYQCQMGKQSMGTPSTAISKRTDNKMYRLQSGQTPVVRP 756
Query: 696 NTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSD- 754
+ + +YG D +P GTNAIVAV++YTGYDMEDAMILNKS+ +RG +G +Y+ + DL
Sbjct: 757 DLHNQYGFDNFPNGTNAIVAVISYTGYDMEDAMILNKSAHERGFGYGTVYKADIFDLKGV 816
Query: 755 -DGNKVDRGQKLFRRNKDAKSLH---SVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRT 810
++ + F +D K H ++I DGLP +G + G+P C+ D TT +
Sbjct: 817 PGASRSAKPTLHFGLGRDVKEDHDARNIISQDGLPIIGTRVKAGDPLCAYIDDTTGRTKF 876
Query: 811 NSRKGSESVFVDYVAVDMKNSKNLP-QKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWP 869
+ KG E+ F+D V V ++ + QK +I+ R R+P+IGDKFSSRHGQKGVCSQ +P
Sbjct: 877 HKYKGDETAFIDEVRVLGSDAGDAELQKIHIKLRIPRSPVIGDKFSSRHGQKGVCSQKFP 936
Query: 870 DIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
IDMPFS +GM+PD+IINPHAFPSRMTI M +ES+A K
Sbjct: 937 AIDMPFS-ESGMQPDVIINPHAFPSRMTIGMFVESMAGK 974
>gi|398396774|ref|XP_003851845.1| DNA-directed RNA polymerase I subunit RPA135 [Zymoseptoria tritici
IPO323]
gi|339471725|gb|EGP86821.1| hypothetical protein MYCGRDRAFT_73125 [Zymoseptoria tritici IPO323]
Length = 1213
Score = 696 bits (1797), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 389/918 (42%), Positives = 558/918 (60%), Gaps = 76/918 (8%)
Query: 29 EGLSEMFD-HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQG 87
EG E+ CR+ ++Y G+ F++ G +FG PVML++ RCHL+G
Sbjct: 110 EGRREILPVECRERHVTYRGRFRG--RFEHRVNGGEWKETVRDFGNLPVMLRSNRCHLEG 167
Query: 88 ADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAV 147
+ LV+ +EE E+GGYFI+NG+E++ R +I+ ++NYPM+++R SF R YT +
Sbjct: 168 LSPRDLVNKREETEELGGYFIVNGIEKLVRMLIVNRRNYPMAIIRPSFEGRGATYTKYGI 227
Query: 148 VIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTC 207
IR VR DQ+S T L+YL +G+V F + E+L+PV +VLKAL +TND EIF +
Sbjct: 228 QIRSVRPDQTSQTNVLHYLSDGNVTFRFSWRKNEFLVPVLMVLKALTETNDREIFEGIVG 287
Query: 208 CYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESY 267
KG V++RV+++L + +L R + ++G F+ V+ + S
Sbjct: 288 P-----ASSKGLDSKQFVTDRVELLLRTYKAYNLHGRSKTRAYLGSKFRVVLGVPEDLSD 342
Query: 268 YAVAETVIRDYIFVHLN-------DNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQE 320
A +R + HL +++DKF +LIFM++KL+SLV+ DNPD++QNQE
Sbjct: 343 EAAGTEFLRKIVMPHLGSYEVTEANDSDKFRMLIFMIRKLYSLVEGECTIDNPDAVQNQE 402
Query: 321 ILLPGHLITIYLKEKLEDWLRK-GKKLIQDEIENNGKKFDF--FNLANIKKVMEKNPSKQ 377
ILLPG L + +KE++E+WL G L + NN F+ F+ + K++ K ++
Sbjct: 403 ILLPGALYGMIIKERIEEWLTSIGLSLREWGRSNNWPSFNSRDFDKDFMPKIIRKT-NEN 461
Query: 378 IGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS 437
+G +++ L TG L + TGLDLQQ +G+TV AE++NF RFI+ FR VHRG+ FA L+TT+
Sbjct: 462 LGQALDYFLSTGNLVSPTGLDLQQVSGFTVVAEKINFFRFIAHFRMVHRGSFFAQLKTTT 521
Query: 438 VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVAS-YYDSRGNIRDFSKMRTSILRVL 496
VRKLLPESWGFLCPVHTPDG PCGLLNH+ C++A+ D+ G S+M
Sbjct: 522 VRKLLPESWGFLCPVHTPDGSPCGLLNHLAHKCKIATESIDASGVPGLISQM-------- 573
Query: 497 IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDL 556
GV + S L S +S+ LDGR++G + + + LR KV +P +L
Sbjct: 574 -GVASV-SDATLEDS-----VSIQLDGRILGFCSPKQAKLIADTLRYWKVEGNQGVPTEL 626
Query: 557 EVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPD- 615
E+GYVPLS+GG YPG+Y+F+ + RPV+ + L + ++ +GPFEQ FM I C +
Sbjct: 627 EIGYVPLSIGGQYPGVYMFSQAARMYRPVKYLPL-----EKLDYVGPFEQPFMSIACTEP 681
Query: 616 ---GGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQ 672
GD +TH E T +LS++AN TP+S+ NQSPRNMYQCQM KQTMG
Sbjct: 682 EVTSGD--------STHVEFDVTNILSIIANQTPFSNQNQSPRNMYQCQMGKQTMGTPGT 733
Query: 673 ALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNK 732
ALK+R D K Y LQT QTP+VRT + +YG+D +P GTNA+VAV++YTGYDM+DAMI+NK
Sbjct: 734 ALKYRTDNKSYRLQTGQTPVVRTPKHNEYGLDNFPNGTNAVVAVISYTGYDMDDAMIINK 793
Query: 733 SSVDRGMCHGQIYQTETIDLSDDGNKVDRGQK------LFRRNKDA---KSLHSVIDSDG 783
S+ +RG +G IY+ + IDL+ + +K RG + +F A S +D DG
Sbjct: 794 SAHERGFGYGTIYKAKKIDLAAE-SKATRGGRGGAITNMFGFAPGAVVKSSWRETLDDDG 852
Query: 784 LPYVGQMIHPGEPYCSIY----DKTTNSW-------RTNSRKGSESVFVDYVAV--DMKN 830
L VG + G+P S Y D T + + K +E+ +++ + + +
Sbjct: 853 LGRVGVKLQEGDPVASTYSVVKDPLTGEYVNKDGISHIHRYKDTEAGYIEEIKMIGNEAG 912
Query: 831 SKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPH 890
+ + Q +IR+R R+P+IGDKFSSRHGQKGVCSQ WP IDMPF+ +GM+PD+IINPH
Sbjct: 913 TSDPCQAISIRYRIPRSPVIGDKFSSRHGQKGVCSQKWPTIDMPFT-ESGMQPDVIINPH 971
Query: 891 AFPSRMTIAMLLESVAAK 908
AFPSRMTI M +ES+A K
Sbjct: 972 AFPSRMTIGMFVESLAGK 989
>gi|342873602|gb|EGU75766.1| hypothetical protein FOXB_13785 [Fusarium oxysporum Fo5176]
Length = 1232
Score = 696 bits (1795), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/900 (42%), Positives = 551/900 (61%), Gaps = 64/900 (7%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR+ ++Y G+L A +E++ ++ G PV R FGQ PVM+K+ RCHL+ LV K
Sbjct: 118 CRERHVTYRGRLSATLEYR-INGGDPVEFTR-EFGQVPVMIKSNRCHLENNSPALLVERK 175
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
EE+ E+GGYFI+NG+E++ R + L K+N+PM++ R SF++R GYT +++R VR D++
Sbjct: 176 EESEELGGYFIVNGIEKIIRMLQLNKRNFPMAINRPSFQNRGPGYTPYGIILRAVRPDET 235
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
S T L+YL +G++ F + EYL+PV ++LKALV+TND EIF L K
Sbjct: 236 SQTNVLHYLSDGNMTFRFSWRKNEYLVPVMMILKALVETNDREIFEGLVGPAGSK----- 290
Query: 218 GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRD 277
+ + ++ R++++L + +L ++ ++GE F+ V+ + + V +R
Sbjct: 291 -STENTFLTHRIELLLRTYKSYNLYSKSDTRAYLGEKFRVVLGVPDTMTNLEVGTEFLRR 349
Query: 278 YIFVHLND-------NNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITI 330
+ VHL + + +KF LL+FM++KL++LV DNPD++QNQEILL G L
Sbjct: 350 IVLVHLGNVDVTEEQDKEKFKLLLFMIRKLYALVAGDCAVDNPDAVQNQEILLGGFLYGQ 409
Query: 331 YLKEKLEDWLRKG-KKLIQDEIENNGKKFDFFNLANIKKVMEKN----PSKQIGTSIETM 385
LKE+L+++L + ++D + N F + +K N ++ +G ++E
Sbjct: 410 ILKERLDEFLSVNVRASLRDYLRRNPGVA--FTSEDFRKEFPNNIFRKANENLGNALEYF 467
Query: 386 LKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPES 445
L TG L + +GLDLQQ AG+TV AE+LNFLRFIS FR VHRGA FA L+TT+VRKLLPES
Sbjct: 468 LSTGNLQSASGLDLQQTAGFTVVAEKLNFLRFISHFRMVHRGAFFAQLKTTAVRKLLPES 527
Query: 446 WGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSL 505
WGF+CPVHTPDG PCGLLNH+ C++ + Y +I ++ +G++
Sbjct: 528 WGFMCPVHTPDGAPCGLLNHLAHKCKIMTDYVDVSHIASLAQE----------LGIV--- 574
Query: 506 PKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSL 565
+ + + V+LDG+++G E ++ R KV +P LE+GYVP S
Sbjct: 575 -DVSSASTEENVVVMLDGKILGFCTPKESVRIADCFRYWKVEGTHGVPLQLEIGYVPPSR 633
Query: 566 GGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRNA 624
GG+YPG+Y+ ++P + VRPV+ + L E+ +GP+EQ +M I P + G+
Sbjct: 634 GGSYPGIYMTSTPARMVRPVKYLPLQKED-----WVGPYEQPYMSIAVVPQEVESGK--- 685
Query: 625 FPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYH 684
+TH E PT MLS++AN+TP+SD NQSPRNMYQCQM KQTMG A+++R D K Y
Sbjct: 686 --STHVEFDPTNMLSILANMTPFSDFNQSPRNMYQCQMGKQTMGTPGAAIRYRTDNKSYR 743
Query: 685 LQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQI 744
+QT QTPIVR + YG D +P G NA+VAV++YTGYDM+DAMILNKS+ +RG HG I
Sbjct: 744 IQTGQTPIVRAPLHNTYGFDNFPNGMNAVVAVISYTGYDMDDAMILNKSAHERGFGHGTI 803
Query: 745 YQTETIDLSDDG-----NKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCS 799
Y+T+ I L DD V + + + ++D DGLP+VG++I G+ C+
Sbjct: 804 YKTKKISLKDDSRTKATKSVTKAFGFAPHSYVSAQYQGMLDDDGLPHVGRLIQEGDVICA 863
Query: 800 IYDKTT--NSWRTN--------SRKGSESVFVDYVAVDMKNSKNLP-QKANIRFRHTRNP 848
+ T N N K SE+ FV+ V + +S N P Q +++FR R+P
Sbjct: 864 WHTVTPDYNGKLVNLDGITHYEKYKDSENGFVEEVRLIGADSGNEPLQTISVKFRIPRSP 923
Query: 849 IIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
IIGDKFSSRHGQKGV SQ WP +D+PFS TG+ PD+IINPHAFPSRMTI M +ES+A K
Sbjct: 924 IIGDKFSSRHGQKGVASQKWPTMDLPFS-ETGISPDIIINPHAFPSRMTIGMFVESLAGK 982
>gi|340923939|gb|EGS18842.1| RNA polymerase-like protein [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 1235
Score = 696 bits (1795), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 387/908 (42%), Positives = 551/908 (60%), Gaps = 80/908 (8%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSP--VVRERFNFGQFPVMLKTRRCHLQGADSQKLVS 95
CR+ ++Y GKL A E++ ++ G P VRE GQ P+M+K+ +CHL+ LV
Sbjct: 118 CRERHVTYRGKLTATFEYR-INDGEPQEFVRE---LGQMPIMVKSNKCHLENNPPALLVQ 173
Query: 96 LKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKD 155
KEE+ E+GGYFI+NG+E++ R +++ ++N+P++++R SF +R YT +++R VR D
Sbjct: 174 RKEESEELGGYFIINGIEKIIRMLLVNRRNFPLAIIRPSFTNRGPSYTQYGIIVRSVRPD 233
Query: 156 QSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKK 215
++S T L+YL +G+V F + EYL+PV ++LKALV+TND EIF L + K
Sbjct: 234 ETSQTNVLHYLSDGNVTFRFSWRKNEYLVPVMMILKALVETNDREIFEGLVGPPNSK--- 290
Query: 216 EKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVI 275
+ + +++RV+++L + L T+ Q ++G F+ V+ + S Y V +
Sbjct: 291 ---GIENTFLTDRVELLLRTYKKYGLYTKSQTRAYLGSKFRVVLGVPDTMSDYEVGTEFL 347
Query: 276 RDYIFVHLNDNN-------DKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLI 328
R + VHL N DKF +L+FM +KL++LV DNPD++QNQEILL G L
Sbjct: 348 RKIVLVHLGCVNVTEEQDLDKFKMLLFMCRKLYALVAGDCAVDNPDAVQNQEILLGGFLY 407
Query: 329 TIYLKEKLEDWLRKG-KKLIQDEIENN------GKKFDF-FNLANIKKVMEKNPSKQIGT 380
+ LKE+LE+ L + ++D + N + F F +A ++ E IG
Sbjct: 408 GMILKERLEELLSVSLRAALRDYLRRNPTISFTSQTFQKDFPIAIFRRTNE-----NIGN 462
Query: 381 SIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRK 440
++E L TG L + +GLDLQQ +G+TV AE+LNF RFIS FR VHRG+ FA L+TT+VRK
Sbjct: 463 ALEYFLSTGNLQSPSGLDLQQVSGFTVVAEKLNFWRFISHFRMVHRGSFFAQLKTTTVRK 522
Query: 441 LLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVG 500
LLPESWGFLCPVHTPDG PCGLLNH+ C++ + + D S + +++ +GV
Sbjct: 523 LLPESWGFLCPVHTPDGAPCGLLNHLAHKCKIMT------DTLDTSAVPGAVME--LGVN 574
Query: 501 MIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGY 560
S + + V+LDGR++G + LRR KV IP LE+GY
Sbjct: 575 DYSS------AATSESVVVMLDGRIIGWCTPKASRIIAETLRRWKVEGNHGIPLQLEIGY 628
Query: 561 VPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGG 620
VP S GG+YPG+Y+ + P + VRPV+ ++L E+ +GP EQ +M I C
Sbjct: 629 VPPSKGGSYPGIYMASKPARMVRPVKYLALAKED-----FVGPHEQPYMSIACTP----- 678
Query: 621 RRNAFPA--THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRA 678
P TH E PT +LS++AN+TP+SD NQSPRNMYQCQM KQTMG A+K+R
Sbjct: 679 -EEIIPGDHTHVEYDPTNILSILANMTPFSDFNQSPRNMYQCQMGKQTMGTPGAAIKYRT 737
Query: 679 DQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRG 738
D K+Y LQT QTPIVR+ + YG D +P GTNA+VAV++YTGYDM+DAMI+NKS+ +RG
Sbjct: 738 DNKMYRLQTGQTPIVRSPLHNVYGFDNFPNGTNAVVAVISYTGYDMDDAMIINKSAHERG 797
Query: 739 MCHGQIYQTETIDLSDDGNKVDRGQKLFRR-------NKDAKSLHSVIDSDGLPYVGQMI 791
HG IY+T+ I L DD R K + ++D DGLP+VG+++
Sbjct: 798 FGHGTIYKTKKISLKDDTRT--RTSKTITKMFGFAPGTPIRPEYREMLDEDGLPHVGRLV 855
Query: 792 HPGEPYCSIYDKTTN-SWRTNSRKG---------SESVFVDYVAVDMKNSKNLP-QKANI 840
G+ C+ + + + S + ++ G +E FV+ V V + N P Q +I
Sbjct: 856 REGDILCAWHTVSADYSGKLVNKDGITHWERYKDAEDAFVEEVRVIGSETGNEPLQTVSI 915
Query: 841 RFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAM 900
+ R R+P+IGDKFSSRHGQKGVCSQ WP IDMPFS +G++PD+IINPHAFPSRMTI M
Sbjct: 916 KLRIPRSPVIGDKFSSRHGQKGVCSQKWPAIDMPFSE-SGIQPDVIINPHAFPSRMTIGM 974
Query: 901 LLESVAAK 908
+ES+A K
Sbjct: 975 FVESLAGK 982
>gi|225557526|gb|EEH05812.1| DNA-directed RNA polymerase I [Ajellomyces capsulatus G186AR]
Length = 1242
Score = 696 bits (1795), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 388/908 (42%), Positives = 547/908 (60%), Gaps = 75/908 (8%)
Query: 37 HCRQAKISYTGKLMADVEFQYLDA-GSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVS 95
CR+ +Y G+L A +E++ + VRE GQ P+ML++ RCHL+ ++LV
Sbjct: 126 ECRERHATYRGRLRARLEYRVNNGEWKESVRE---LGQVPIMLRSNRCHLEKCSPEQLVQ 182
Query: 96 LKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKD 155
KEE+ E+GGYFI+NG E++ R +I+ ++N+PM+++RSSF R + YT + IR VR D
Sbjct: 183 RKEESEELGGYFIVNGNEKLIRMLIVGRRNFPMAIIRSSFTKRGQTYTKYGIQIRSVRID 242
Query: 156 QSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKK 215
Q+S T L+YL +G+V F + EYL+PV ++LKALV+TND EIF L ++
Sbjct: 243 QTSQTNVLHYLSDGNVTFRFSWRKNEYLVPVVMILKALVETNDREIFERLVG------RE 296
Query: 216 EKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVI 275
+ + V++RV+++L + L R ++GE F+PV+ V +
Sbjct: 297 GSEGIKNSFVTDRVELLLRTYKGYKLYGRDDTRAYLGEKFRPVLGMPADIPDDMVGAEFL 356
Query: 276 RDYIFVHLND-------NNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLI 328
R + HL + +NDKFN+++FM++KL++LV DNPD++ NQE+LL G L
Sbjct: 357 RKVVLPHLGNQNVTESQDNDKFNMILFMIRKLYTLVAGECAPDNPDAVSNQEVLLGGSLY 416
Query: 329 TIYLKEKLEDWLRKGKKLIQD-EIENNGKKFD--FFNLANIKKVMEKNPSKQIGTSIETM 385
+ LKE+LE+WLR + +D N +F F + +++ + ++ IG ++E
Sbjct: 417 GMLLKERLEEWLRAFGPIARDWSFRNQNARFSDPRFEKEFLSRIVSRT-NENIGGALEYF 475
Query: 386 LKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPES 445
L TG L + TGLDLQQ +GYTV AE++NF RFIS FR +HRG+ FA L+TT+VRKLLPES
Sbjct: 476 LSTGNLVSPTGLDLQQPSGYTVIAEKINFYRFISHFRMIHRGSFFAQLKTTTVRKLLPES 535
Query: 446 WGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSL 505
WGFLCPVHTPDG PCGLLNH+ C +A+ N+ D S + I + + SL
Sbjct: 536 WGFLCPVHTPDGSPCGLLNHLAHKCEIAT-----SNL-DVSGVPQVISDLGVTYESSVSL 589
Query: 506 PKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSL 565
+ V +V LDGR++G + + LR KV+ +P +LE+GY+P S
Sbjct: 590 DESV--------AVQLDGRILGYCSPKQARMISDTLRYWKVAGNKSLPVELEIGYIPNSN 641
Query: 566 GGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRNA 624
G YPG+Y+F+ + +RPV+ + L ++ +GPFEQ FMEI C P G
Sbjct: 642 RGQYPGIYIFSQCARMMRPVKYLPL-----DKLDYVGPFEQPFMEIACVPSDIMSG---- 692
Query: 625 FPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYH 684
+TH E PT +LS+VAN+TP+SD NQSPRNMYQCQM+KQ MG ++++R D KLY
Sbjct: 693 -ISTHVEFDPTHILSIVANMTPFSDFNQSPRNMYQCQMSKQAMGTPGASIEYRTDNKLYR 751
Query: 685 LQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQI 744
LQT QTP+VRT Y YG+D +P G NA+VAVL+YTGYDM+DAMI+NKS+ DRG G I
Sbjct: 752 LQTGQTPVVRTPLYNSYGLDNFPNGMNAVVAVLSYTGYDMDDAMIINKSAHDRGFGWGTI 811
Query: 745 YQTETIDLSDDGNKVDRGQKLFRRNKD-----------AKSLHSVIDSDGLPYVGQMIHP 793
Y+T+ L D K RG+ RR +D DGLP++G +
Sbjct: 812 YKTKIYSLDD---KESRGRGKARREVSKLFGFAPGSLIKGEWRHALDEDGLPHIGARVTE 868
Query: 794 GEPYCSI----YDKTTNSWRTN--------SRKGSESVFVDYVAVDMKNSKNLP-QKANI 840
G + +D +NS+ TN K +E ++D V + + P Q ++
Sbjct: 869 GSIVAAWHTVRFDPVSNSY-TNIDGQTHLLKYKDTEEGYIDNVRIFGSETGGDPCQAISV 927
Query: 841 RFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAM 900
+FR R P+IGDKFSSRHGQKGVCSQLWP DMPFS TG++PD+IINPHAFPSRMTI M
Sbjct: 928 KFRVPRKPVIGDKFSSRHGQKGVCSQLWPATDMPFS-ETGIQPDIIINPHAFPSRMTIGM 986
Query: 901 LLESVAAK 908
+ES+A K
Sbjct: 987 FIESLAGK 994
>gi|321259894|ref|XP_003194667.1| DNA-directed RNA polymerase I polypeptide 2 [Cryptococcus gattii
WM276]
gi|317461139|gb|ADV22880.1| DNA-directed RNA polymerase I polypeptide 2, putative [Cryptococcus
gattii WM276]
Length = 1192
Score = 695 bits (1793), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 371/879 (42%), Positives = 538/879 (61%), Gaps = 44/879 (5%)
Query: 39 RQAKISYTGKLMADVEFQYLD--AGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
R+ +Y KL ++++ D E G PVM+++ RC+LQG + +L+
Sbjct: 131 RERLATYRSKLTVNIKWTVTDEDGNRKEFEEIKECGLLPVMVRSIRCNLQGLPATELIKH 190
Query: 97 KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQ 156
EE+ GGYFI+NG E++ R +++P+++ P+++ R SF R YT IRCVR D+
Sbjct: 191 SEESTSFGGYFIVNGNEKIIRYLVVPRRHNPINLYRPSFAKRGASYTPYGCQIRCVRPDE 250
Query: 157 SSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKE 216
++ T ++YL NG L F + EY++P+ ++LKALVD +D EIF L
Sbjct: 251 TACTNTIHYLSNGGATLRFAWRKVEYMIPLMLILKALVDASDKEIFEGLI---------- 300
Query: 217 KGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIR 276
+G + +++RV+++L + L T QCL ++GE F+ V++ S V ++R
Sbjct: 301 QGEYDNTFLTDRVELLLRGQKSWGLHTGAQCLDYLGEKFRVVLNVPDDWSNVQVGGYLLR 360
Query: 277 DYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKL 336
+ VHL DKF +L+FML+KL+S V + DNPDS Q+ E+LLPG L + +KE+
Sbjct: 361 KVVLVHLPAPRDKFRMLLFMLRKLYSQVSGATCPDNPDSPQHHEVLLPGFLYGMIIKERF 420
Query: 337 EDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTG 396
+D L K IQ ++ + GK F + V+ K + IG+ + L TG L + TG
Sbjct: 421 DDCLNAVKSQIQLDLRD-GKARSFMDPKYFTSVLSKT-NWDIGSKLSYFLATGNLVSPTG 478
Query: 397 LDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPD 456
LDLQQ +G+T+ AE+LNF R++S FR +HRGA FA L+TT+VRKL+PESWGFLCPVHTPD
Sbjct: 479 LDLQQTSGFTIVAEKLNFYRYLSHFRCIHRGAFFAELKTTTVRKLMPESWGFLCPVHTPD 538
Query: 457 GEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGV-GMIPSLPKLVKSGPPA 515
G PCGLLNH++ TC++ + S + S + L+ GM +
Sbjct: 539 GSPCGLLNHLSHTCQIVT-----------SSLDVSHIPALLSAQGMTQVFASSIDG--RR 585
Query: 516 VLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLF 575
++ + LDG+V+G + +++ LR+LK A +P DLE+GYVP++ GG YPGLYLF
Sbjct: 586 MVCIQLDGKVIGYASPMKAKQLANRLRKLKTEADPKVPLDLEIGYVPVTKGGQYPGLYLF 645
Query: 576 TSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIHPT 635
+S + +RPV + E+ ++ +G FEQV+M++ ++H E+ PT
Sbjct: 646 SSRSRMMRPVTYL-----ENGKLDHLGSFEQVYMDVAITKE----EIEKGVSSHLELDPT 696
Query: 636 GMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRT 695
MLSV+ANLTP+SD NQSPRNMYQCQM KQ+MG A+ R D K+Y LQ+ QTP+VR
Sbjct: 697 SMLSVIANLTPFSDFNQSPRNMYQCQMGKQSMGTPSTAISKRTDNKMYRLQSGQTPVVRP 756
Query: 696 NTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSD- 754
+ + YG D +P GTNAIVAV++YTGYDMEDAMILNKS+ +RG +G +Y+ + DL
Sbjct: 757 DLHNHYGFDNFPNGTNAIVAVISYTGYDMEDAMILNKSAHERGFGYGTVYKADIFDLKGV 816
Query: 755 -DGNKVDRGQKLFRRNKDAKSLH---SVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRT 810
++ + F +D K H ++I DGLP +G + G+P C+ D TT +
Sbjct: 817 PGASRSAKPTLHFGLGRDVKEDHDARNIISQDGLPIIGTKVKTGDPLCAYIDDTTGRTKF 876
Query: 811 NSRKGSESVFVDYVAVDMKNSKNLP-QKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWP 869
+ KG E+ F+D V V ++ + QK +I+ R R+P+IGDKFSSRHGQKGVCSQ +P
Sbjct: 877 HKYKGDETAFIDEVRVLGSDAGDAELQKIHIKLRIPRSPVIGDKFSSRHGQKGVCSQKFP 936
Query: 870 DIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
IDMPFS +GM+PD+IINPHAFPSRMTI M +ES+A K
Sbjct: 937 AIDMPFS-ESGMQPDVIINPHAFPSRMTIGMFVESMAGK 974
>gi|401623208|gb|EJS41314.1| rpa135p [Saccharomyces arboricola H-6]
Length = 1203
Score = 695 bits (1793), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 383/879 (43%), Positives = 547/879 (62%), Gaps = 44/879 (5%)
Query: 39 RQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKE 98
RQ SY GKL+ +++ ++ G + E + G PVML++ RCHL +LV KE
Sbjct: 127 RQRLTSYRGKLLLKLKWS-VNNGEENLFEVRDCGGLPVMLQSNRCHLNKMSPYELVQHKE 185
Query: 99 EAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSS 158
E+ E+GGYFI+NG+E++ R +I+ ++N+PM+++R SF +R Y+ + IR VR DQ+S
Sbjct: 186 ESDEIGGYFIVNGIEKLIRMLIVQRRNHPMAIIRPSFANRGASYSHYGIQIRSVRPDQTS 245
Query: 159 VTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKG 218
+ L+YL +G V F + EYL+PV ++LKAL T+D EIF+ +
Sbjct: 246 QSNVLHYLNDGQVTFRFSWRKNEYLVPVVMILKALCHTSDREIFDGII----------GN 295
Query: 219 AVGSPLVSERVKIILAEVQDL--SLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIR 276
V +++R++++L + L R Q LQ++G+ F+ V +S V + V+
Sbjct: 296 DVKDSFLTDRLELLLRGFKKRYPQLQNRTQVLQYLGDKFRVVFQASPDQSDLEVGQEVLD 355
Query: 277 DYIFVHL--NDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKE 334
+ VHL + N DKF +++FM++KL+SLV DNPD+ Q+QE+LL G L + LKE
Sbjct: 356 RIVLVHLGKDGNQDKFRMMLFMIRKLYSLVAGECSPDNPDATQHQEVLLGGFLYGMILKE 415
Query: 335 KLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQ 394
K++++L+ ++ +I G +F + + +V+ + ++ IG+ ++ L TG L +Q
Sbjct: 416 KIDEYLQNIIAQVRMDI-TRGMAINFKDKRYMSRVLMR-VNENIGSKMQYFLSTGNLVSQ 473
Query: 395 TGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHT 454
+GLDLQQ +GYTV AE++NF RFIS FR VHRG+ FA L+TT+VRKLLPESWGFLCPVHT
Sbjct: 474 SGLDLQQVSGYTVVAEKINFYRFISHFRMVHRGSFFAQLKTTTVRKLLPESWGFLCPVHT 533
Query: 455 PDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPP 514
PDG PCGLLNH CR+++ D SK I +L +G+ P+ P
Sbjct: 534 PDGSPCGLLNHFAHKCRISTQQS------DVSK----IPSILYSLGVAPASHTFAAG--P 581
Query: 515 AVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASV-IPDDLEVGYVPLSLGGAYPGLY 573
++ V +DG+V+G + + + LR KV + +P DLE+GYVP S G YPGLY
Sbjct: 582 SLCCVQIDGKVIGWVSHEQGMIIADTLRYWKVEGKTPGLPVDLEIGYVPPSTRGQYPGLY 641
Query: 574 LFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIH 633
LF + +RPVR + L E+ ++GPFEQV+M I + N TH E
Sbjct: 642 LFGGHSRMLRPVRYLPLDKED-----IVGPFEQVYMNIAVTP--QEIQNNVH--THVEFT 692
Query: 634 PTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIV 693
PT +LS++ANLTP+SD NQSPRNMYQCQM KQTMG AL R+D KLY LQT QTPIV
Sbjct: 693 PTNILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGVALCHRSDNKLYRLQTGQTPIV 752
Query: 694 RTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLS 753
+ N Y YG+D +P G NA+VAV++YTGYDM+DAMI+NKS+ +RG +G +Y+TE +DL+
Sbjct: 753 KANLYDDYGMDNFPNGFNAVVAVISYTGYDMDDAMIINKSADERGFGYGTMYKTEKVDLA 812
Query: 754 DDGNKVDRGQKLFRRNKDA--KSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTN 811
+ ++ D + F D K +D DGLPY+G + G+P C+ +D T N +
Sbjct: 813 LNRSRGDPITQHFGFGNDEWPKEWLEKLDEDGLPYIGTYVEEGDPICAYFDDTLNKTKIK 872
Query: 812 SRKGSESVFVDYVAV--DMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWP 869
+ SE +++ V + D N Q +I++R R P IGDKFSSRHGQKGVCS+ WP
Sbjct: 873 TYHSSEPAYIEEVNLIGDESNKFQELQTVSIKYRIRRLPQIGDKFSSRHGQKGVCSRKWP 932
Query: 870 DIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
IDMPFS TG++PD+IINPHAFPSRMTI M +ES+A K
Sbjct: 933 TIDMPFS-ETGIQPDIIINPHAFPSRMTIGMFVESLAGK 970
>gi|367003930|ref|XP_003686698.1| hypothetical protein TPHA_0H00540 [Tetrapisispora phaffii CBS 4417]
gi|357525000|emb|CCE64264.1| hypothetical protein TPHA_0H00540 [Tetrapisispora phaffii CBS 4417]
Length = 1203
Score = 695 bits (1793), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 384/884 (43%), Positives = 546/884 (61%), Gaps = 52/884 (5%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
RQ SY GKL+ +++ D G + + G PVML++ RCHL +LV K
Sbjct: 126 ARQRLTSYKGKLLVKLKWSVND-GDDTFTDMRDCGGLPVMLQSNRCHLNNLSPYELVKQK 184
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
EE+ E+GGYFI+NG+E++ R +I+ ++N+PM+++R SF +R Y+ V +R VR DQ+
Sbjct: 185 EESDELGGYFIINGIEKLIRMLIVQRRNHPMAIIRPSFSNRGASYSQYGVQLRSVRPDQT 244
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
S T L+YL +G V F + EYL+P ++LKAL+DT+D EIF+
Sbjct: 245 SQTNVLHYLNDGQVTFRFSWRKNEYLIPAVMILKALIDTSDREIFD-------------- 290
Query: 218 GAVGSPL----VSERVKIILAEVQDLS--LTTRLQCLQHIGEHFQPVIDGLQSESYYAVA 271
G +GS + +++R++++L + L R Q LQ+IG+ F+ V +S V
Sbjct: 291 GIIGSDIKNSFLTDRLELLLRGFKKRFPLLQNRTQVLQYIGDKFRVVFQASPDKSDLEVG 350
Query: 272 ETVIRDYIFVHLN--DNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
+ VI + VHL +N DK +L+FM++KL+SLV DNPD+ Q+QE+LL G L
Sbjct: 351 QEVIDRIVLVHLGKGNNEDKSRMLLFMIRKLYSLVAGECCPDNPDATQHQEVLLGGFLYG 410
Query: 330 IYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTG 389
+ +KEK++++L+ I+ +I N G +F + + +V+ + ++ IG+ ++ L TG
Sbjct: 411 MIIKEKIDEYLQNIVAQIRTDI-NRGIAINFKDRKYMSRVLMR-VNENIGSKLQYFLSTG 468
Query: 390 RLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFL 449
L +Q+GLDLQQ +GYTV AE++NF RFIS FR VHRG+ FA L+TT+VRKLLPESWGFL
Sbjct: 469 NLVSQSGLDLQQVSGYTVVAEKINFYRFISHFRMVHRGSFFAQLKTTTVRKLLPESWGFL 528
Query: 450 CPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLV 509
CPVHTPDG PCGLLNH C++++ D SK I +L +G+ P+
Sbjct: 529 CPVHTPDGSPCGLLNHFAHKCQISTVQS------DVSK----IPSLLYSLGVTPASQAFA 578
Query: 510 KSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASV-IPDDLEVGYVPLSLGGA 568
P++ V +DG++VG + + + LR KV + +P DLE+GYVP S G
Sbjct: 579 AG--PSLCCVQIDGKIVGWTTHEQGKIIADTLRLWKVEGKTAGLPLDLEIGYVPPSTRGQ 636
Query: 569 YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPAT 628
YPGLY+F + +RPVR + L E+ ++GPFEQV+M I + N +
Sbjct: 637 YPGLYIFGGHSRMMRPVRYLPLDKED-----IVGPFEQVYMNIAVTP--QEIQNNVH--S 687
Query: 629 HEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTP 688
H E PT +LS++ANLTP+SD NQSPRNMYQCQM KQTMG AL R+D KLY LQ+
Sbjct: 688 HVEFTPTNILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGVALVHRSDNKLYRLQSG 747
Query: 689 QTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTE 748
QTPIV+ N Y YG+D +P G NA+VAV++YTGYDM+DAMI+NKS+ +RG +G +Y+ E
Sbjct: 748 QTPIVKANLYDDYGMDNFPNGMNAVVAVISYTGYDMDDAMIINKSADERGFGYGTMYKVE 807
Query: 749 TIDLSDDGNKVDRGQKLFRRNKDA--KSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTN 806
DLS + ++ D + F D K +D DGLP +G + G+P C+ +D T N
Sbjct: 808 KHDLSMNRSRGDPITQHFGFGPDEWPKEWLEKLDDDGLPMIGTYVEEGDPVCAYFDDTLN 867
Query: 807 SWRTNSRKGSESVFVDYVAV--DMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVC 864
+ + SE +++ V + D N Q +I++R R P IGDKFSSRHGQKGVC
Sbjct: 868 KTKIKTYHSSEPAYIEEVNLIGDESNKFQELQTVSIKYRIRRTPQIGDKFSSRHGQKGVC 927
Query: 865 SQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
S+ WP IDMPFS TG++PD+IINPHAFPSRMTI M +ES+A K
Sbjct: 928 SRKWPTIDMPFS-ETGIQPDIIINPHAFPSRMTIGMFVESLAGK 970
>gi|170091560|ref|XP_001877002.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164648495|gb|EDR12738.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 1179
Score = 695 bits (1793), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 386/893 (43%), Positives = 553/893 (61%), Gaps = 69/893 (7%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
R+ SY G++ V+ + D + G P+M+++ RC+L+ S +LV
Sbjct: 120 ARERLTSYRGRMT--VKLCWTDISGQRHEMPKDCGLLPIMVRSVRCNLRSMSSAELVKHH 177
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
EE E GGYF++NG ER+ R +ILP++N+ +S++R SF +R YT AV +RCVR DQ+
Sbjct: 178 EEPEEFGGYFVINGNERLIRYLILPRRNHVISLLRPSFSNRGPSYTQYAVQMRCVRPDQT 237
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
SVT L+YL NGS L F + +EY++P+ +VLKALV +D EIF + + Y+
Sbjct: 238 SVTNTLHYLSNGSAMLRFSWRKQEYVIPIMLVLKALVGASDKEIFEGVIM---QDYE--- 291
Query: 218 GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRD 277
+ +++RV+++L + ++ T QCL+++G+ F+ V++ + + A ++R
Sbjct: 292 ----NTFLTDRVELLLRSFKMFTMQTGEQCLEYLGDKFRVVLNLPEDWTNAAQGAWLLRK 347
Query: 278 YIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLE 337
I VHL +KF +L+FML+KL+SLV + +DNPDS Q+QE+LLPG L + +KE+LE
Sbjct: 348 MILVHLETPREKFRMLLFMLRKLYSLVSGSCCADNPDSPQHQEVLLPGSLYGMIIKERLE 407
Query: 338 DWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGL 397
+ L + I ++ N G DF + +KV+ K + IG+ + L TG L + TGL
Sbjct: 408 EILNGIRMGISMDVRN-GVAVDFNDKRYFQKVVSK-VNFDIGSKLSNFLATGNLVSPTGL 465
Query: 398 DLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDG 457
DLQQ +G+T+ AE+LN+ R+IS FR +HRGA FA L+TT+VRKLLPE+WGFLCPVHTPDG
Sbjct: 466 DLQQASGFTIVAEKLNWQRYISHFRCIHRGAFFAELKTTTVRKLLPEAWGFLCPVHTPDG 525
Query: 458 EPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAV- 516
PCGLLNH++ +CR+ + + V IP+L L G V
Sbjct: 526 SPCGLLNHLSRSCRITT--------------------TPLAVAHIPAL--LAAHGMTQVF 563
Query: 517 ---------LSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGG 567
LSV LDGRV+G S ++ +LR K +P DLE+G VP+S GG
Sbjct: 564 TPTIDGRKNLSVQLDGRVIGWARPSVAAQLATNLRIWKTEGKHEVPLDLEIGLVPVSNGG 623
Query: 568 AYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRNAFP 626
YPGL+LF++ + +RPV+ + ++ +GPFEQV+M I C P+
Sbjct: 624 QYPGLFLFSTTARMMRPVKYLGNGRDDQ-----VGPFEQVYMNIACIPE-----EIEEAV 673
Query: 627 ATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQ 686
+TH E PT LS++ANLTP+SD NQSPRN+YQCQM KQ+MG AL+ R D KLY LQ
Sbjct: 674 STHVEHEPTNFLSILANLTPFSDFNQSPRNIYQCQMGKQSMGTPATALQHRTDNKLYRLQ 733
Query: 687 TPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQ 746
T Q+P+VR + Y +D +P GTNAIVAV++YTGYDMEDAMILNKS+ +RG +G +Y+
Sbjct: 734 TGQSPVVRPALHNTYAMDSFPNGTNAIVAVISYTGYDMEDAMILNKSAHERGFGYGTVYK 793
Query: 747 TETIDLSD--DGNKVDRGQKL-FRRNKDAKS----LHSV---IDSDGLPYVGQMIHPGEP 796
++ IDL + +K++ L F D ++ LH+ +D DGLP++G + G+P
Sbjct: 794 SQIIDLKEMRGASKLNSVPTLHFGLGNDIRTTGDKLHACLEFLDLDGLPFIGARLSSGDP 853
Query: 797 YCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLP-QKANIRFRHTRNPIIGDKFS 855
+ D TT + KG E ++D V + ++ + QK +I R TR+P+IGDKFS
Sbjct: 854 IAAYVDDTTGRTKFVRYKGDELGYIDEVRLLGFDAGDTELQKIHITLRITRSPVIGDKFS 913
Query: 856 SRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
SRHGQKGVCSQ WP +DMPFS +GM+PD+IINPHAFPSRMTI ML+ES+A K
Sbjct: 914 SRHGQKGVCSQKWPAVDMPFS-ESGMQPDVIINPHAFPSRMTIGMLVESMAGK 965
>gi|440793499|gb|ELR14681.1| DNAdirected RNA polymerase, beta subunit [Acanthamoeba castellanii
str. Neff]
Length = 1139
Score = 695 bits (1793), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/905 (42%), Positives = 545/905 (60%), Gaps = 66/905 (7%)
Query: 27 LDEGLSEMFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQ 86
LDE L + CR+ +Y G +A + ++ G V R + G+ P+M+K+ +CHL
Sbjct: 88 LDEKLYP--NECREGGFTYNGLCVATIGYK---VGEKVGRLQRTMGKIPLMVKSNKCHLD 142
Query: 87 GADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKA 146
G +LV +EE E+GGYFI+NGLE++ R + +PK+N+ R S+ + YT
Sbjct: 143 GMSPAELVKAREEGTELGGYFIINGLEKLIRLICMPKRNF-----RPSWAGKGNYYTQHG 197
Query: 147 VVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLT 206
V IR VRKDQS+ + L+YL NGS L + +EY +P ++LKAL+ T D EI+N L
Sbjct: 198 VQIRSVRKDQSNQNMTLHYLSNGSCSLRISVFKQEYFIPGILILKALISTTDREIYNSLV 257
Query: 207 CCYDEKYKKEKGAVGSPLVSERVKIILAEVQDL-SLTTRLQCLQHIGEHFQPVIDGLQSE 265
+G V + +++RV++IL E + ++ T+ QCL ++G F+ + +
Sbjct: 258 ----------RGDVENTFLTDRVEVILREAKSYENMETKEQCLAYLGSSFRIALRVPERM 307
Query: 266 SYYAVAETVIRDYIFVHLN--DNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILL 323
+ V + ++ YIFVHLN N KF+LL FM++KL+SL DN DS N E+LL
Sbjct: 308 TDIEVGQFLLDRYIFVHLNPQKNKQKFDLLAFMIRKLYSLASGEIGPDNADSPMNFELLL 367
Query: 324 PGHLITIYLKEKLEDWLRKGKKLIQDEIE-----NNGKKFDFFNLANIKKVMEKNPSKQI 378
PGH+ ++LKEK+++WL G KLI +++ G ++ ++K MEKN +
Sbjct: 368 PGHVYLMFLKEKMQEWL-VGVKLILNKLHAMPSAKAGLTWESDPEGYLRKAMEKN--FDL 424
Query: 379 GTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSV 438
G ++ L TG L + TG+ L Q GY V AE+LN+LR+ S FR VHRGA FA ++TT+V
Sbjct: 425 GKKVDYFLATGNLISSTGMGLMQLNGYVVVAEKLNWLRYFSHFRCVHRGAFFATMKTTAV 484
Query: 439 RKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIG 498
RKL+PESWGF CPVHTPDG PCGL+NH+T+ CR+ ++ + + R + + L+
Sbjct: 485 RKLMPESWGFFCPVHTPDGAPCGLINHLTAVCRLITH---QADTRRMASL-------LVS 534
Query: 499 VGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEV 558
+G+ P+ ++ L V LDG ++G IP + ++V LR LKV IP LE+
Sbjct: 535 LGVSPASQSILFPSD-QYLDVFLDGELMGFIPHAAAPQLVEKLRYLKVKKLEDIPWTLEL 593
Query: 559 GYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGD 618
G VP + YPGLY++T+P + +RPV+ ++ + +IE IG FEQV+M I D
Sbjct: 594 GLVPAGVSKQYPGLYMWTTPSRMMRPVKYLA-----TGDIEYIGSFEQVYMNIAVLDED- 647
Query: 619 GGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRA 678
R++ TH+EI P MLSVVA LTP+ D NQSPRNMYQCQMAKQ++ + + R
Sbjct: 648 --RKDKDIFTHQEIRPMNMLSVVAGLTPFCDMNQSPRNMYQCQMAKQSIATPCHSFQHRT 705
Query: 679 DQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRG 738
D K+Y +Q PQ P+ RTN Y +Y +D+YP G NAIVAVL+YTGYDMEDAMI+NK++ RG
Sbjct: 706 DNKIYRIQNPQAPVSRTNVYDEYELDDYPIGANAIVAVLSYTGYDMEDAMIINKAAYQRG 765
Query: 739 MCHGQIYQTETIDLSDDGNKVDRGQKL---FRRNKDAKSLH------------SVIDSDG 783
H +Y+ E +D + K D + + +KD +++ ++ DG
Sbjct: 766 FGHASVYKNELVDFARKEKKGDAPKYIANPLVEDKDQQAMDEDGMQPAKKRFCEELEEDG 825
Query: 784 LPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFR 843
LP G + G P+ D T + K E VD V V +SK L Q+ +I+ R
Sbjct: 826 LPAPGTRLEAGSPFYVTVDGGTGKPHLHRYKSKEEAVVDEVRVVGTSSKGLIQRVSIKLR 885
Query: 844 HTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLE 903
RNP+IGDKF+SRHGQKGV SQLWP +MPFS +GM PD+IINPHAFPSRMTIAML+E
Sbjct: 886 LNRNPVIGDKFASRHGQKGVMSQLWPQENMPFSE-SGMSPDVIINPHAFPSRMTIAMLIE 944
Query: 904 SVAAK 908
S+A+K
Sbjct: 945 SMASK 949
>gi|453084975|gb|EMF13019.1| DNA-directed RNA polymerase I subunit beta [Mycosphaerella
populorum SO2202]
Length = 1204
Score = 694 bits (1792), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/907 (41%), Positives = 553/907 (60%), Gaps = 76/907 (8%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR+ ++Y G+ +E++ D P +FG P+ML++ RCHL+G +KLV+ +
Sbjct: 114 CRERHVTYRGRFRGRLEWRINDG--PWKESPRDFGMLPIMLRSNRCHLEGLSPKKLVNAR 171
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
EE E+GGYFI+NG+E++ R +I+ ++NYPM+++R SF +R Y+ V IR VR DQ+
Sbjct: 172 EETEELGGYFIVNGIEKLIRMLIVNRRNYPMAIIRPSFVNRGTAYSKFGVQIRSVRPDQT 231
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
S T L+YL +G++ F + EYL+P +V+KAL +TND EIF + K K
Sbjct: 232 SQTNVLHYLNDGTLTFRFSWRKNEYLIPAVMVMKALAETNDREIFEGIVGPAGGKDMDTK 291
Query: 218 GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRD 277
V +RV+++L + ++ T+ +C ++GE F+PV+ S V ++R
Sbjct: 292 -----QFVIDRVELLLRTFKPYNMHTKAKCRAYLGEKFRPVLGLPDDISNEDVGTELLRR 346
Query: 278 YIFVHLN-------DNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITI 330
+ HL ++ DKF +L+FM +KL++LV+ DNPD++QNQEILLPGHL +
Sbjct: 347 IVLPHLGSYDVTEANDMDKFRMLLFMTRKLYALVEGECAVDNPDAVQNQEILLPGHLYGM 406
Query: 331 YLKEKLEDWLRKGKKLIQDEIENNGKKFDF-------FNLANIKKVMEKNPSKQIGTSIE 383
+KE++E+WL ++ ++ G + + F + KV+ K ++ +G ++
Sbjct: 407 IVKERIEEWLTTA---VRTQLSIWGAQNQYPSFLSKEFERDFMTKVIRKT-NENLGQGLD 462
Query: 384 TMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLP 443
+ TG L + +GLDLQQ +G+TV AE++NF RFIS FR VHRG+ FA L+TT+VRKLLP
Sbjct: 463 YFMSTGNLVSPSGLDLQQVSGFTVVAEKINFYRFISHFRMVHRGSFFAQLKTTTVRKLLP 522
Query: 444 ESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIP 503
ESWGFLCPVHTPDG PCGLLNH+ C++A+ S T + V+ +G+
Sbjct: 523 ESWGFLCPVHTPDGSPCGLLNHLAHKCKIATS----------SADTTHLPDVIAQLGVTS 572
Query: 504 SLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPL 563
+ + ++V L+GR++G + + + LR KV +P DLE+GYVPL
Sbjct: 573 TSEASLNDS----VTVQLNGRILGYCSPKQAKVIHDTLRYWKVEGTHNVPLDLEIGYVPL 628
Query: 564 SLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC--PDGGDGGR 621
S GG YPG+Y+F+ + +RPV+ + L + ++ IGPFEQ +M I C P+ G
Sbjct: 629 SAGGQYPGVYMFSEAARMIRPVKYLPL-----EKLDHIGPFEQPYMSIACTEPEIASGD- 682
Query: 622 RNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQK 681
++H E T +LS+VAN TP+S+ NQSPRNMYQCQM KQTMG ALK+R D K
Sbjct: 683 -----SSHVEFDVTNILSIVANQTPFSNFNQSPRNMYQCQMGKQTMGTPGTALKYRTDNK 737
Query: 682 LYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCH 741
Y LQT QTP+VRT + +YG+D +P GTNA+VAV++YTGYDM+DAMILNKS+ +RG +
Sbjct: 738 SYRLQTGQTPVVRTPKHNEYGLDNFPNGTNAVVAVISYTGYDMDDAMILNKSAHERGFGY 797
Query: 742 GQIYQTETIDLSDDGNKVDRGQKL-----FRRNKDAKS-LHSVIDSDGLPYVGQMIHPG- 794
G IY+ + +DL++D K RG ++ F K+ + +D DGLP VG + G
Sbjct: 798 GTIYKAKKVDLNED--KGRRGAQVTSVFGFAPGGLIKAQWRATLDDDGLPAVGTKVREGD 855
Query: 795 ----------EPYCSIYDKTTNSWRTNSRKGSESVFVDYVAV---DMKNSKNLPQKANIR 841
+P+ Y+ + K +E +V+ V + ++ N + Q +IR
Sbjct: 856 AIAAHYSVTKDPHTGEYENKDGVTHIHRYKDAEEAYVEEVKIIGNELGNGEPF-QAVSIR 914
Query: 842 FRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAML 901
FR R+P+IGDKFSSRHGQKGV SQ WP DMPFS +GM+PD+IINPHAFPSRMTI M
Sbjct: 915 FRIPRSPVIGDKFSSRHGQKGVMSQKWPTTDMPFS-ESGMQPDVIINPHAFPSRMTIGMF 973
Query: 902 LESVAAK 908
+ES+A K
Sbjct: 974 VESLAGK 980
>gi|444320617|ref|XP_004180965.1| hypothetical protein TBLA_0E03910 [Tetrapisispora blattae CBS 6284]
gi|387514008|emb|CCH61446.1| hypothetical protein TBLA_0E03910 [Tetrapisispora blattae CBS 6284]
Length = 1204
Score = 694 bits (1791), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/865 (43%), Positives = 540/865 (62%), Gaps = 48/865 (5%)
Query: 58 LDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFR 117
++ G E + G P+ML++ RCHL +LV KEE+ E GGYFI+NG+E++ R
Sbjct: 142 VNDGEETFSELKDCGGLPIMLQSNRCHLNNLSPYELVEKKEESDEFGGYFIVNGIEKLIR 201
Query: 118 SVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWL 177
+I+ ++N+PM+++R SF +R Y+ + +R VR DQ+S T L+YL +G V F
Sbjct: 202 MLIVQRRNHPMAIIRPSFANRGASYSPYGIQLRSVRPDQTSQTNVLHYLNDGQVTFRFSW 261
Query: 178 QGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQ 237
+ EYL+PV ++LKALVD +D EIF+ + V + +++R++++L +
Sbjct: 262 RKNEYLVPVIMILKALVDISDREIFDGIV----------GDDVKNSFLTDRLELLLRGFK 311
Query: 238 DL--SLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLND-------NND 288
+ L R Q LQ++G+ F+ V +S Y V + V+ + VHL + N+D
Sbjct: 312 NRYPQLHNRTQVLQYLGDKFRVVFQSSPDKSDYEVGKEVLNRIVLVHLGNSSIENESNSD 371
Query: 289 KFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQ 348
K LL+FM++KL+SLV DNPD+ Q+QE+LL G L + +KEK++++L+ ++
Sbjct: 372 KVRLLLFMIRKLYSLVAGECCPDNPDATQHQEVLLGGFLYGMIIKEKIDEYLQNILAQVR 431
Query: 349 DEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQ 408
+I N G +F + + +V+ + + IG+ ++ L TG L +Q+GLDLQQ +GYTV
Sbjct: 432 ADI-NRGLAINFSDRKYMTRVLMR-VNDNIGSKLQYFLSTGNLVSQSGLDLQQVSGYTVV 489
Query: 409 AERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTS 468
AE++NF RF++ FR VHRG+ FA L+TT+VRKLLPESWGFLCPVHTPDG PCGLLNH
Sbjct: 490 AEKINFHRFLAHFRMVHRGSFFAQLKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHFAH 549
Query: 469 TCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGV 528
CR+++ D SK I +L +G+ P+ + P++ V LDG++VG
Sbjct: 550 KCRISTTQS------DVSK----IPAILYSLGVSPA--SQTYAAGPSLCCVQLDGKIVGW 597
Query: 529 IPSSEIEKVVAHLRRLKVSAAS-VIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRN 587
+ + + V LR KV + +P DLE+GYVP S G YPGL+LF + +RPVR
Sbjct: 598 VSHEQGKIVADTLRFWKVEGKTDGLPLDLEIGYVPPSSKGQYPGLFLFAGHSRMMRPVRY 657
Query: 588 ISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPY 647
+ L E+ ++GPFEQ +M I + TH E PT +LS++ANLTP+
Sbjct: 658 LPLDKED-----IVGPFEQTYMNIAVTPQEIQNNIH----THVEFTPTNILSILANLTPF 708
Query: 648 SDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYP 707
SD NQSPRNMYQCQM KQTMG AL R+D KLY LQ+ QTPIV+ N Y +YG+D +P
Sbjct: 709 SDFNQSPRNMYQCQMGKQTMGTPGVALCHRSDNKLYRLQSGQTPIVKANLYDEYGMDNFP 768
Query: 708 TGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVD--RGQKL 765
GTNA+VAV++YTGYDM+DAMI+NKS+ +RG +G +Y+ E +DLS + ++ D
Sbjct: 769 NGTNAVVAVISYTGYDMDDAMIINKSADERGFGYGTMYKVEKVDLSLNRSRGDPITQHSG 828
Query: 766 FRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVA 825
F ++ K +D DGLPY+G + G+P C+ +D+TTN + + SE +++ V
Sbjct: 829 FGNDEWPKEWLEKLDEDGLPYIGTYVEEGDPICAYFDETTNRTKIKTYHSSEPGYIEEVN 888
Query: 826 V--DMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRP 883
+ D N Q I+FR R P IGDKFSSRHGQKGVCS+ WP IDMPFS TG++P
Sbjct: 889 LIGDESNKSQEIQNITIKFRIRRTPQIGDKFSSRHGQKGVCSRKWPTIDMPFSE-TGIQP 947
Query: 884 DLIINPHAFPSRMTIAMLLESVAAK 908
D+IINPHAFPSRMTI M +ES+A K
Sbjct: 948 DIIINPHAFPSRMTIGMFVESLAGK 972
>gi|402226318|gb|EJU06378.1| DNA-directed RNA polymerase I polypeptide 2 [Dacryopinax sp.
DJM-731 SS1]
Length = 1209
Score = 694 bits (1790), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/880 (43%), Positives = 539/880 (61%), Gaps = 47/880 (5%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
R+ SY G++ + + +D G R + G P+M+++ RC+L+G S +LV+
Sbjct: 118 ARERLTSYRGRMSIKLAWS-VDGGQEEDDTR-DCGLLPIMVRSDRCNLKGMSSAELVAHH 175
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
EEA E GGYF++NG ER+ R +ILP++N+ MS++R S+ +R YT AV +RCVR DQ+
Sbjct: 176 EEAEEFGGYFLINGNERLIRYLILPRRNHVMSLIRPSYTNRGASYTQYAVTMRCVRPDQT 235
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
S+T L+YL+NG+ L F + +EY +P+ ++LK L+ +D E+F +
Sbjct: 236 SLTNSLHYLVNGTAMLRFSWRKQEYTIPIMLILKCLMGASDKEVFEGIVM---------- 285
Query: 218 GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRD 277
G + + +RV+++L ++ SL T QCL+++G F+ V++ V +I
Sbjct: 286 GDYQNTFLLDRVELLLRSFKNYSLPTSQQCLEYLGHKFRVVLNLPDDWEDVHVGSWLINK 345
Query: 278 YIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLE 337
I VHL +KF +L+FML+KL+SLV S +DNPDS QNQEILLPG L + +KE+LE
Sbjct: 346 VILVHLPAAREKFRMLLFMLRKLYSLVSGASCADNPDSPQNQEILLPGSLYAMAIKERLE 405
Query: 338 DWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGL 397
D L + + ++ + + G DF N + ++ +K + +G + L TG L + TGL
Sbjct: 406 DALNQIRNMVTLD-QRQGVPIDFHNKKYLNRLFKK-INFDVGARMANFLATGNLISPTGL 463
Query: 398 DLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDG 457
DLQQ AG+TV AE+LN+ R+IS FR VHRGA FA L+TT+VRKLLPESWGF+CPVHTPDG
Sbjct: 464 DLQQAAGFTVVAEKLNWYRYISHFRCVHRGAFFAELKTTTVRKLLPESWGFVCPVHTPDG 523
Query: 458 EPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVL 517
PCGLLNH++ +C + + S +I +L +GM + V L
Sbjct: 524 APCGLLNHLSRSCLIVTSTPSVSHIP----------ALLSSLGMTEAFSTHVDG--RQNL 571
Query: 518 SVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTS 577
V LDGRV+G + ++ LR K A +P DLE+G VP S GG YPGL+LF+
Sbjct: 572 CVQLDGRVIGWASPTIAGQLAIALRLWKTEAKHNVPLDLEIGLVPESKGGQYPGLFLFSQ 631
Query: 578 PPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFP--ATHEEIHPT 635
+ +RPV+ LP++ I+ IG FEQV+M+I + P +TH E+ PT
Sbjct: 632 KARMMRPVK--YLPNDR---IDHIGSFEQVYMDIAIEP------QEIIPNVSTHVELSPT 680
Query: 636 GMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRT 695
LS++ANLTP+S+ NQSPRN+YQCQM KQ+MG AL R D KLY LQT Q+P+VR
Sbjct: 681 NFLSILANLTPFSNFNQSPRNIYQCQMGKQSMGTPSTALSRRTDNKLYRLQTGQSPVVRP 740
Query: 696 NTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDD 755
+ YG+D +P GTNAIVAV++YTGYDMEDAMI+NKS+ +RG HG IY+T +DL++
Sbjct: 741 ELHNTYGMDHFPNGTNAIVAVISYTGYDMEDAMIINKSAHERGFGHGTIYKTHVLDLTEV 800
Query: 756 GNKVDRGQK---LFRRNKDAK---SLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWR 809
R F D + +D DGLP+VG + G+P + D TT
Sbjct: 801 RGSQKRSATPNIHFGIGTDIRPDDKRREFVDWDGLPFVGTRLLEGDPMGAHIDDTTGRTV 860
Query: 810 TNSRKGSESVFVDYVAVDMKNSKNL-PQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLW 868
+ KG E +VD V + ++ + QK + R R P+IGDKFSSRHGQKGVCSQ W
Sbjct: 861 FDKYKGIEVAYVDTVRLLGGDAGDTEAQKMQVTLRIPRPPVIGDKFSSRHGQKGVCSQKW 920
Query: 869 PDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
P IDMPFS +GM+PD+IINPHAFPSRMTI M +ES+A K
Sbjct: 921 PAIDMPFSE-SGMQPDVIINPHAFPSRMTIGMFVESMAGK 959
>gi|261199570|ref|XP_002626186.1| DNA-directed RNA polymerase I polypeptide 2 [Ajellomyces
dermatitidis SLH14081]
gi|239594394|gb|EEQ76975.1| DNA-directed RNA polymerase I polypeptide 2 [Ajellomyces
dermatitidis SLH14081]
gi|239615559|gb|EEQ92546.1| DNA-directed RNA polymerase I polypeptide 2 [Ajellomyces
dermatitidis ER-3]
gi|327354710|gb|EGE83567.1| DNA-directed RNA polymerase [Ajellomyces dermatitidis ATCC 18188]
Length = 1243
Score = 694 bits (1790), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/908 (42%), Positives = 543/908 (59%), Gaps = 75/908 (8%)
Query: 37 HCRQAKISYTGKLMADVEFQYLDA-GSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVS 95
CR+ +Y G+L A +E++ + VRE GQ P+ML++ RCHL+ A ++LV
Sbjct: 126 ECRERHATYRGRLRARLEYKVNNGEWKESVRE---LGQVPIMLRSNRCHLEKASPEQLVQ 182
Query: 96 LKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKD 155
KEE+ E+GGYFI+NG E++ R +I+ ++N+PM++VR+SF R YT + IR VR D
Sbjct: 183 RKEESEELGGYFIVNGNEKLIRMLIVGRRNFPMAIVRNSFTKRGPTYTKYGIQIRSVRPD 242
Query: 156 QSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKK 215
Q+S T L+YL +G+V F + E+L+PV ++LKALV+TND +IF L ++
Sbjct: 243 QTSQTNVLHYLSDGNVTFRFSWRKNEFLVPVAMILKALVETNDRDIFERLVG------RE 296
Query: 216 EKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVI 275
+ + V++RV+++L + L R ++GE F+PV+ AV +
Sbjct: 297 GSKGIQNSFVTDRVELLLRTYKGYGLHGRDDTRAYLGEKFRPVLGMPADMPDEAVGTEFL 356
Query: 276 RDYIFVHLND-------NNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLI 328
R + HL + +NDKFN+++FM++KL++LV DNPD++ NQE+LL G L
Sbjct: 357 RKVVLPHLGNQNVTESQDNDKFNMILFMIRKLYTLVAGDCAPDNPDAISNQEVLLGGFLY 416
Query: 329 TIYLKEKLEDWLRKGKKLIQD-EIENNGKKFD--FFNLANIKKVMEKNPSKQIGTSIETM 385
+ LKE+LE+WLR + +D N F F + +++ + ++ IG ++E
Sbjct: 417 GMLLKERLEEWLRSFGPVARDWAFRNQNAPFSDPRFEKEFLSRIVTRT-NENIGGALEYF 475
Query: 386 LKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPES 445
L TG L + TGLDLQQ +GYTV AE++NF RFIS FR +HRG+ FA L+TT+VRKLLPES
Sbjct: 476 LSTGNLVSPTGLDLQQPSGYTVIAEKINFYRFISHFRMIHRGSFFAQLKTTTVRKLLPES 535
Query: 446 WGFLCPVHTPDGEPCGLLNHMTSTCRVA-SYYDSRGNIRDFSKMRTSILRVLIGVGMIPS 504
WGFLCPVHTPDG PCGLLNH+ C +A S D G + +V+ +G+
Sbjct: 536 WGFLCPVHTPDGSPCGLLNHLAHKCEIATSNLDVSG-----------VPQVISNLGVTSE 584
Query: 505 LPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLS 564
+ + V LDGR++G + + LR KV +P +LE+GYVP S
Sbjct: 585 SSVALDES----VVVQLDGRILGYCSPKQARMISDTLRYWKVEGHRSLPVELEIGYVPNS 640
Query: 565 LGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRN 623
G YPG+YLF+ + +RPV+ + L ++ +GP EQ +MEI C P G
Sbjct: 641 NRGQYPGIYLFSQCARMLRPVKYLPL-----DKLDYVGPLEQPYMEIACLPSDITSG--- 692
Query: 624 AFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLY 683
+TH E PT +LS+VAN+TP+SD NQSPRNMYQCQM+KQ MG ++++R D KLY
Sbjct: 693 --VSTHVEFDPTHILSIVANMTPFSDFNQSPRNMYQCQMSKQAMGTPGSSMEYRTDNKLY 750
Query: 684 HLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQ 743
LQT Q+P+VR+ Y YG+D +P G NA+VAVL+YTGYDM+DAMI+NKS+ DRG G
Sbjct: 751 RLQTGQSPVVRSPLYNSYGLDNFPNGMNAVVAVLSYTGYDMDDAMIINKSAHDRGFGWGT 810
Query: 744 IYQTETIDLSDDGNKVDRGQKLFRRNKD-----------AKSLHSVIDSDGLPYVGQMIH 792
IY+T+ L D K RG+ RR +D DGLP++G +
Sbjct: 811 IYKTKIYSLDD---KESRGRGKARREVSKLFGFAPGGLVKGEWRDALDEDGLPHIGARVT 867
Query: 793 PGEPYCSI----YDKTTNSWRTNSR-------KGSESVFVDYVAVDMKNSKNLP-QKANI 840
G + +D +NS+ R K +E +VD V + + P Q ++
Sbjct: 868 EGSLVAAWHTVRFDPVSNSYVNIDRQTHFLKYKDTEEGYVDSVRILGSETGGDPCQALSV 927
Query: 841 RFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAM 900
+FR R P+IGDKFSSRHGQKGVCSQLWP IDMPFS TG++PD+IINPHAFPSRMTI M
Sbjct: 928 KFRIPRKPLIGDKFSSRHGQKGVCSQLWPAIDMPFS-ETGIQPDIIINPHAFPSRMTIGM 986
Query: 901 LLESVAAK 908
+ES+A K
Sbjct: 987 FIESLAGK 994
>gi|320165771|gb|EFW42670.1| DNA-directed RNA polymerase I complex subunit Rpa2 [Capsaspora
owczarzaki ATCC 30864]
Length = 1126
Score = 693 bits (1788), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/884 (42%), Positives = 538/884 (60%), Gaps = 55/884 (6%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR+ +Y L ++++ D PV + GQ P+M+K++RC+L+ +LV+ +
Sbjct: 89 CRERASTYKSDLHVTLKWKVDDG--PVNQTERKLGQIPIMVKSQRCNLRDLSPTELVANQ 146
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
EEA EMGGYFI+NG+ER+ R ++LP++NY M++ R SFR R YT +IRC R DQ+
Sbjct: 147 EEAEEMGGYFIINGIERIMRMLLLPRRNYVMALDRPSFRKRGPEYTTFGTMIRCTRLDQT 206
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
S T+ +++L +G+ + F + EYL+P ++LKALV T D EIF +
Sbjct: 207 SQTITVHFLQDGNCMVRFSYRKNEYLVPAVLILKALVTTTDQEIFERI------------ 254
Query: 218 GAVGSP----LVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAET 273
VGS +++RV+++L D+ + Q +GE F+ +D + S V
Sbjct: 255 --VGSSKLDSFLTDRVELMLRSATDMHVHNSKQARVFLGERFRIALDVPEDMSDEDVGRL 312
Query: 274 VIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLK 333
++R + +HL+++ DKF+LL+FM+QKL+ +V ++N DS N EIL G L ++LK
Sbjct: 313 LLRKLMLIHLDNDQDKFDLLVFMIQKLYKVVSGDCCTENADSPMNHEILTSGQLYLMFLK 372
Query: 334 EKLEDWLRKGKKLIQDEIENNGKKFDFFNLAN-IKKVMEKNPSKQIGTSIETMLKTGRLA 392
EK+E++L K ++ ++ N ++ F + K + KNP IG +E ++ TG LA
Sbjct: 373 EKMEEYLTACKAVVAQDLRRNPEQVSFSAGSQYFTKSLSKNPV-DIGRRLEYLMATGNLA 431
Query: 393 TQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPV 452
+ TGLDLQQ +G+TV A++LNFLR++S FR +HRGA FA ++TT+VRKLLPE+WGF+CPV
Sbjct: 432 SATGLDLQQVSGFTVVADKLNFLRYLSHFRCIHRGAFFAEMKTTTVRKLLPEAWGFVCPV 491
Query: 453 HTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSG 512
HTPDG PCGLLNH+ + C V + D S+ + +LI +GM P K+
Sbjct: 492 HTPDGAPCGLLNHLAAKCLVVD------EVADASR----VPAMLIELGMAPIDHKI--HY 539
Query: 513 PPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGL 572
P L+VLLDGR++G + ++ AH R K +P +E V S G +PGL
Sbjct: 540 PSDYLNVLLDGRIIGKLAPENAAQITAHFRYRKAQGHKDLPRYMESALVLPSERGQFPGL 599
Query: 573 YLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPA--THE 630
++FTS + VRPV+N+ + +E IG FEQV+M+I + + P TH
Sbjct: 600 FIFTSLCRMVRPVQNLI-----ANTVEYIGSFEQVYMDIAVLEA------DIVPGVTTHH 648
Query: 631 EIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQT 690
E+ PT MLSV A +TPYSDHNQSPRNMYQCQM KQTMG AL+ R+D KLY + PQ
Sbjct: 649 ELSPTAMLSVNALMTPYSDHNQSPRNMYQCQMGKQTMGTPAHALQHRSDNKLYRVMNPQA 708
Query: 691 PIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETI 750
+VR Y Y D YP+GTNA++A ++YTGYDMEDAMI+NK S DRG + IY+T+ +
Sbjct: 709 SLVRPQGYEDYKCDNYPSGTNAVIAFVSYTGYDMEDAMIINKGSYDRGFGYATIYKTQIV 768
Query: 751 DLS--DDGNKVDRGQKLF---RRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTT 805
DL+ GN+ + L+ RN+ + +++DG P + ++ G P CS D+TT
Sbjct: 769 DLAKLKPGNRENSKPTLYFGTVRNQREVT-EKQVEADGFPPLETVLKNGAPICSYVDETT 827
Query: 806 NSWRTNSRKGSESVFVDYVA-VDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVC 864
N + K SE ++ + + + S Q+A IRFR RNP+IGDKF+SRHGQKGVC
Sbjct: 828 NMAQVVKYKSSEEGYLHEIKLIAGEGSDQRAQRAIIRFRLRRNPVIGDKFASRHGQKGVC 887
Query: 865 SQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
SQLWP MPF +GM PD++ NPH FPSRMTI M +E++A K
Sbjct: 888 SQLWPSEGMPFCE-SGMVPDILFNPHGFPSRMTIGMWIETMAGK 930
>gi|389746920|gb|EIM88099.1| DNA-directed RNA polymerase I polypeptide 2 [Stereum hirsutum
FP-91666 SS1]
Length = 1233
Score = 693 bits (1788), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/886 (43%), Positives = 542/886 (61%), Gaps = 52/886 (5%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
R+ SY G++ + ++ P R + G P+M+++ RC+L+ S +LV
Sbjct: 129 ARERLTSYRGRMTIKICWKLDSDPQPRTLTR-DCGLVPIMVRSVRCNLRSMSSAELVKHH 187
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
EE E GGYF++NG ER+ R +ILP++N+ +++ R SF R YT AV IRCVR DQ+
Sbjct: 188 EEPEEFGGYFVINGNERLIRYLILPRRNHVVALSRPSFVGRGPSYTPYAVQIRCVRPDQT 247
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCC-YDEKYKKE 216
+VT L+YL NGS F + +EY++P+ ++LKALV +D+EIF + YD +
Sbjct: 248 AVTNTLHYLSNGSAMFRFSWRKQEYVIPIMLILKALVSASDMEIFEGVMMQDYDNTF--- 304
Query: 217 KGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIR 276
+++RV+++L + SL T QCL ++G+ F+ V+ + + A+ +I
Sbjct: 305 --------LTDRVELLLRSFKMYSLYTGDQCLDYLGDKFRVVLGLPEDWNNQAIGAWIIH 356
Query: 277 DYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKL 336
+ VHL+D +KF +L+FML+KL+S+V + DNPDS Q+QE+LLPG L + +KEKL
Sbjct: 357 KLVLVHLDDVREKFRMLLFMLRKLYSIVSKSCCVDNPDSPQHQEVLLPGQLYGMIIKEKL 416
Query: 337 EDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTG 396
ED L + + + ++ DF N I K++ K + IG + L TG L + TG
Sbjct: 417 EDALNQIRTQVALDVRRGDSSVDFQNDRYITKIINKV-NFDIGAKMSNFLATGNLVSPTG 475
Query: 397 LDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPD 456
LDLQQ +G+T+ AE+LN+ R+IS FR +HRGA FA L+TT+VRKLLPE+WGFLCPVHTPD
Sbjct: 476 LDLQQASGFTIVAEKLNWHRYISHFRCIHRGAFFAELKTTTVRKLLPEAWGFLCPVHTPD 535
Query: 457 GEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAV 516
G PCGLLNH++ TCR+ + + ++ +LI GM + V
Sbjct: 536 GSPCGLLNHLSRTCRIVTAPLAVAHLPS----------LLIEHGMTQAFSTSVDGS--KN 583
Query: 517 LSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFT 576
L V LDGRV+G + + +LR K +P DLE+G+VP S GG YPGL+LF+
Sbjct: 584 LCVQLDGRVIGWARPFVAKTLATNLRIWKTEGKHNVPLDLEIGFVPASEGGQYPGLFLFS 643
Query: 577 SPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRNAFPATHEEIHPT 635
S + +RPV+ LP+ + G FEQV+M+I P+ ++H E PT
Sbjct: 644 SRARMMRPVK--YLPNGRDDQV---GSFEQVYMDIAVTPE-----EIEPSVSSHVEHSPT 693
Query: 636 GMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRT 695
LS++AN+TP+SD NQSPRN+YQCQM KQTMG AL+ R D KLY LQ+ Q+P+VR
Sbjct: 694 NFLSILANMTPFSDFNQSPRNIYQCQMGKQTMGTPATALRHRTDNKLYRLQSGQSPVVRP 753
Query: 696 NTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDD 755
+ YG+D +P GTNAIVAV++YTGYDMEDAMILNKS+ +RG +G +Y+++ IDL +
Sbjct: 754 ALHNTYGMDSFPNGTNAIVAVISYTGYDMEDAMILNKSAHERGFAYGTVYKSQIIDLKEQ 813
Query: 756 GNKVDR----------GQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTT 805
+ G ++ S +D DGLP +G ++PG+P + D TT
Sbjct: 814 KGAIKATSAPTLHFGLGYEIKTEGDKKHSCVEFLDLDGLPNIGARLNPGDPIAAYTDDTT 873
Query: 806 NSWRTN--SRKGSESVFVDYVAVDMKNSKNLP-QKANIRFRHTRNPIIGDKFSSRHGQKG 862
RT KG E +++ V + ++ + QK +I R TR+P+IGDKFSSRHGQKG
Sbjct: 874 GG-RTKFVKYKGDEVAYIEEVRLLGSDAGDAELQKIHITLRITRSPVIGDKFSSRHGQKG 932
Query: 863 VCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
VCSQ WP IDMPFS +GM+PD+IINPHAFPSRMTI ML+ES+A K
Sbjct: 933 VCSQKWPAIDMPFSE-SGMQPDVIINPHAFPSRMTIGMLVESMAGK 977
>gi|348690653|gb|EGZ30467.1| hypothetical protein PHYSODRAFT_538440 [Phytophthora sojae]
Length = 1179
Score = 693 bits (1788), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 375/896 (41%), Positives = 549/896 (61%), Gaps = 59/896 (6%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CRQ ISYT L+ + + V R + G P+M++++RCHL G +LV +
Sbjct: 109 CRQRGISYTAPLVVTLARSF-GGSQNVERIQRVVGDIPIMVRSKRCHLNGMSPTELVKAR 167
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
EEA EMGGYFI NG ER R + +P++++ M++ R +F +R + YT+ AV ++CV++DQS
Sbjct: 168 EEANEMGGYFICNGNERCVRLLQMPRRHHIMAVRRGAFANRGDLYTELAVTMKCVKRDQS 227
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
+VT+ L+YL +G+ + F ++ +E+++P G+VLKAL D EI+ + +
Sbjct: 228 AVTVTLHYLQDGNATVRFGVKKQEFMIPAGLVLKALYPLTDREIYERVL----------R 277
Query: 218 GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGL-QSESYYAVAETVIR 276
G + +S RV++IL E + SL TR + L ++G+HF+ + + ++ S V ++
Sbjct: 278 GDHENTYLSARVELILREAKKFSLYTRDEALAYLGKHFRFAMPYVYENMSNVEVGSKLLD 337
Query: 277 DYIFVHL----NDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYL 332
DY+FVH+ K LL ML+KL+ DN DS+ N E+LLPGHL + L
Sbjct: 338 DYLFVHIPKGEKGRTQKVELLCLMLRKLYGFAKGDVPEDNSDSVMNHELLLPGHLYLMLL 397
Query: 333 KEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLA 392
KEKL+D L + I E +N K + ++K+ ++ P+ IG ++ L TG L
Sbjct: 398 KEKLQDSLVAMRMNILKETQNKEKSV-VMDQVFLRKMWDRTPN--IGNAMTYFLNTGNLR 454
Query: 393 TQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPV 452
+ +GLDL Q AGYT+ AE+LN+ R+ S FR+VHRG F ++TT+VRKLLP+SWGFLCPV
Sbjct: 455 SSSGLDLLQIAGYTIVAEKLNYYRYFSHFRSVHRGQFFTEMKTTAVRKLLPDSWGFLCPV 514
Query: 453 HTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSG 512
HTPDG PCGLLNH+ C + Y + + D+ + + R L +GMIP+ SG
Sbjct: 515 HTPDGSPCGLLNHLAVECELVCYPAHKAD--DYLQQEVKLARFLTSLGMIPT------SG 566
Query: 513 --------PPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASV------IPDDLEV 558
P + L V+++G+V+G P+ +++ + LR++K + +S I +LEV
Sbjct: 567 YADGALVVPYSYLPVMMNGKVLGGAPAEVCKRIASVLRKVKSADSSEERDANGIVKNLEV 626
Query: 559 GYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGD 618
+ + GG +PGL+L + RPV + +++ IE IGP EQVFM+I C
Sbjct: 627 CLILPTRGGPFPGLFLSADAARMSRPVMQM-----DTKRIEYIGPMEQVFMDIACT---- 677
Query: 619 GGRRNAFPAT-HEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFR 677
+ + PAT H EI PT MLS+VA+LTP+SD+NQSPRNMYQCQMAKQTMG ++ R
Sbjct: 678 --KDDIRPATTHMEIKPTNMLSLVASLTPFSDYNQSPRNMYQCQMAKQTMGTPAHSIVHR 735
Query: 678 ADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDR 737
D K+Y +Q+PQ PIV+ +Y +DEYP GTNA+VAV++YTG+DMEDAMILNKSS +R
Sbjct: 736 TDNKMYRIQSPQIPIVQNERLREYQLDEYPLGTNAVVAVISYTGFDMEDAMILNKSSYER 795
Query: 738 GMCHGQIYQTETIDLSDDGNKVDRGQKLF----RRNKDAKSLHSVIDSDGLPYVGQMIHP 793
G H +Y+ T+D+S +G + K + + + + + +D DG P++GQ+++
Sbjct: 796 GFAHASVYKQLTVDISSNGKQGSTTSKKYFSNIKTDGSGEQCSTKLDRDGFPHIGQVVNY 855
Query: 794 GEPYCSIYDKTTNSWRTNSRKGSESVFVDYV-AVDMKNSKNLPQKANIRFRHTRNPIIGD 852
G+P S D+TT K SE ++ V + + + KA+I+ R RNP IGD
Sbjct: 856 GDPIASWIDETTGQPSFQKHKESEPAIIEQVNMIGSASQASEFTKASIKLRFCRNPTIGD 915
Query: 853 KFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
KFSSRHGQKGV S LWP DMPFS +G+ PD+IINPHAFPSRMTI ML+ES+AAK
Sbjct: 916 KFSSRHGQKGVMSILWPQADMPFSE-SGISPDVIINPHAFPSRMTIGMLIESMAAK 970
>gi|302693869|ref|XP_003036613.1| hypothetical protein SCHCODRAFT_80314 [Schizophyllum commune H4-8]
gi|300110310|gb|EFJ01711.1| hypothetical protein SCHCODRAFT_80314 [Schizophyllum commune H4-8]
Length = 1226
Score = 692 bits (1787), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 375/849 (44%), Positives = 527/849 (62%), Gaps = 47/849 (5%)
Query: 72 GQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMV 131
G P+M+++ RC+L+G S +LV+ +EEA E GGYF++NG ER+ R +ILP++N+ +S++
Sbjct: 162 GLVPIMVRSVRCNLRGMSSAQLVAHREEAEEFGGYFVINGNERLIRYLILPRRNHVISLL 221
Query: 132 RSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLK 191
R SF +R YT AV IRCVR DQ+SVT L+YL NG L F + +EY++P+ ++LK
Sbjct: 222 RPSFANRGPSYTPHAVQIRCVRPDQTSVTNTLHYLSNGMAMLRFSWRKQEYVIPIMLILK 281
Query: 192 ALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHI 251
ALV +D EIF + E + +++RV+++L + ++ T QCL+++
Sbjct: 282 ALVGASDKEIFEGVVMQDFE----------NTFLTDRVELLLRSFKAYTMRTGNQCLEYL 331
Query: 252 GEHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSD 311
G+ F+ V++ + + AV ++ + VHL +K+N+L+FML+KL++LV +D
Sbjct: 332 GDRFRVVLNLPEDWTNLAVGTWLVNKMVLVHLPTPREKYNMLLFMLRKLYALVSGECCAD 391
Query: 312 NPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVME 371
NPDS Q+QE+LLPG L + +KE+ E+ L + I ++ N G DF + + KVM
Sbjct: 392 NPDSPQHQEVLLPGTLYGMIIKERCEEVLNGIRAGIMSDVRN-GVVVDFNDKRYMTKVMS 450
Query: 372 KNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFA 431
K S IG + L TG L + TGLDLQQ +G+T+ AE+LN+ R+IS FR +HRGA FA
Sbjct: 451 K-VSFDIGAKLSNFLATGNLVSPTGLDLQQASGFTIVAEKLNWQRYISHFRCIHRGAFFA 509
Query: 432 GLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTS 491
L+TT+VRKLLPE+WGFLCPVHTPDG PCGLLNH++ TCR+ + +
Sbjct: 510 ELKTTTVRKLLPEAWGFLCPVHTPDGSPCGLLNHLSRTCRITTT----------PLIVAH 559
Query: 492 ILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASV 551
I +L GM + P + + V LDGRV+G + +++ +LR K
Sbjct: 560 IPALLAAHGM--TQPFAGRINGRTNICVQLDGRVIGWARPAVAQQLANNLRIWKTEGMHE 617
Query: 552 IPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEI 611
+P DLE+G V S GG YPGL+LF+S +F+RPV+ LP+ + G FEQV+M I
Sbjct: 618 VPMDLEIGLVLESKGGQYPGLFLFSSRSRFMRPVK--YLPNGRDDQV---GSFEQVYMNI 672
Query: 612 RC-PDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFS 670
C P+ + G +H E +PT LS++AN+TP+SD NQSPRN+YQCQM KQTMG
Sbjct: 673 ACLPEEIEPGV-----TSHVEHNPTNFLSILANMTPFSDFNQSPRNIYQCQMGKQTMGTP 727
Query: 671 VQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMIL 730
A+ R D KLY LQT Q+PIVR + Y +D +P GTNAIVAV++YTGYDMEDAMIL
Sbjct: 728 STAINHRTDNKLYRLQTGQSPIVRPALHNTYAMDAFPNGTNAIVAVISYTGYDMEDAMIL 787
Query: 731 NKSSVDRGMCHGQIYQTETIDLSDDGNKVDR----------GQKLFRRNKDAKSLHSVID 780
NKS+ +RG +G +Y++ IDL D G+ + R A + +
Sbjct: 788 NKSAHERGFGYGTVYKSAIIDLKDQKGATKSSSAPTLHFGLGKDIRRTGDKAHACTEFVG 847
Query: 781 SDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYV-AVDMKNSKNLPQKAN 839
DGLP VG + G+P + + T + KG E+ +VD V + N QK
Sbjct: 848 EDGLPLVGVKLTAGDPMAAFINDVTGRTQFQKYKGDETAYVDQVRLLGGDNGDTELQKIQ 907
Query: 840 IRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIA 899
+ R TR+P+IGDKFSSRHGQKGVCSQ WP +DMPFS +GM+PD+IINPHAFPSRMTI
Sbjct: 908 VTLRITRSPVIGDKFSSRHGQKGVCSQKWPAVDMPFS-ESGMQPDVIINPHAFPSRMTIG 966
Query: 900 MLLESVAAK 908
ML+ES+A K
Sbjct: 967 MLVESMAGK 975
>gi|363749505|ref|XP_003644970.1| hypothetical protein Ecym_2421 [Eremothecium cymbalariae
DBVPG#7215]
gi|356888603|gb|AET38153.1| Hypothetical protein Ecym_2421 [Eremothecium cymbalariae
DBVPG#7215]
Length = 1195
Score = 692 bits (1787), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 384/880 (43%), Positives = 544/880 (61%), Gaps = 45/880 (5%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CRQ SY GKL+ + + ++ G E + G P+ML++ RCHL +LV K
Sbjct: 120 CRQRLASYKGKLLLKLNW-VVNDGEETYTEVRDCGSLPIMLQSNRCHLDKLSPYELVEHK 178
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
EE+ EMGGYFI+NG+E++ R +I+ ++N+PM+++R SF +R Y+ V IR VR DQ+
Sbjct: 179 EESDEMGGYFIVNGIEKLIRMLIVQRRNHPMAIIRPSFANRGASYSPYGVQIRSVRPDQT 238
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
S T L+YL +G V F + EYL+PV ++LKAL D +D EIF+ +
Sbjct: 239 SQTNVLHYLNDGQVTFRFSWRKNEYLVPVVMILKALNDMSDREIFDGIV----------- 287
Query: 218 GA-VGSPLVSERVKIILAEVQDL--SLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETV 274
GA + +++R++++L + L Q LQ++G+ F+ V + Y V +
Sbjct: 288 GADTSNSFLTDRLELLLRSFKKRYPHLQNCRQVLQYLGDKFRVVFQASLDMTDYEVGKEF 347
Query: 275 IRDYIFVHLN-DNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLK 333
++ + VHL DN DK +L+FM++KL+ LV DNPD+ Q+QE+LL G L + +K
Sbjct: 348 LKRIVLVHLGKDNIDKSRMLMFMIRKLYCLVAGECSPDNPDATQHQEVLLGGFLYGMIIK 407
Query: 334 EKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLAT 393
EK+E++L+ + IQ ++ N G +F + + +V+ + ++ IG ++ L TG L +
Sbjct: 408 EKIEEYLQNIRLQIQSDV-NRGIAVNFKDRKYMSRVLMR-VNENIGAKLQYFLSTGNLVS 465
Query: 394 QTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVH 453
Q+GLDLQQ +GYTV AE++NF RFIS FR VHRG+ FA L+TT+VRKLLPESWGFLCPVH
Sbjct: 466 QSGLDLQQVSGYTVVAEKINFYRFISHFRMVHRGSFFAQLKTTTVRKLLPESWGFLCPVH 525
Query: 454 TPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGP 513
TPDG PCGLLNH C++++ D SK I +L +G+ P+ V +
Sbjct: 526 TPDGSPCGLLNHFAHKCKIST------TQTDVSK----IPSILYALGVSPA--SNVSAAG 573
Query: 514 PAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASV-IPDDLEVGYVPLSLGGAYPGL 572
P++ + LDG+++G + V LR KV + + DLEVGYVP S G YPGL
Sbjct: 574 PSMCCIQLDGKIIGWCSHEQGRIVADTLRFWKVEGKTPGLSVDLEVGYVPPSSRGQYPGL 633
Query: 573 YLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEI 632
Y+F + +RPVR + L E+ ++GPFEQV+M I + N TH E
Sbjct: 634 YIFGGHSRMMRPVRYLPLDKED-----IVGPFEQVYMNIAVTP--QEIQNNVH--THVEF 684
Query: 633 HPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPI 692
PT +LS++ANLTP+SD NQSPRNMYQCQM KQTMG L R+D KLY LQT QTPI
Sbjct: 685 SPTNILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGVPLCHRSDNKLYRLQTGQTPI 744
Query: 693 VRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDL 752
V+ Y YG+D++P GTNA+VAV++YTGYDM+DAMI+NKS+ +RG +G +Y+TE +DL
Sbjct: 745 VKAKLYDDYGMDDFPNGTNAVVAVISYTGYDMDDAMIINKSADERGFAYGTVYKTEKVDL 804
Query: 753 SDDGNKVDRGQKLFRRNKDA--KSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRT 810
S + ++ D + F D K +D DG+P +G + G+P C+ +D T N +
Sbjct: 805 SMNRSRGDPITQHFGFGNDEWPKEWLEKLDDDGMPILGTYVEEGDPICAYFDDTLNKTKI 864
Query: 811 NSRKGSESVFVDYVAV--DMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLW 868
+ SE +++ V + D N Q I++R R P IGDKFSSRHGQKGVCS+ W
Sbjct: 865 KTYHSSEPAYIEEVNLIGDESNKFQELQCVTIKYRVRRIPQIGDKFSSRHGQKGVCSRKW 924
Query: 869 PDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
P IDMPF+ TGM+PD+IINPHAFPSRMTI M +ES+A K
Sbjct: 925 PTIDMPFTE-TGMQPDVIINPHAFPSRMTIGMFVESLAGK 963
>gi|403215483|emb|CCK69982.1| hypothetical protein KNAG_0D02320 [Kazachstania naganishii CBS
8797]
Length = 1202
Score = 692 bits (1787), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 377/850 (44%), Positives = 537/850 (63%), Gaps = 51/850 (6%)
Query: 72 GQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMV 131
G PVML++ RCHL LV KEE+ E+GGYFI+NG+E++ R +I+ ++N+PM+++
Sbjct: 158 GGLPVMLQSNRCHLNKLSPYDLVQQKEESDEVGGYFIVNGIEKLIRMLIVQRRNHPMAII 217
Query: 132 RSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLK 191
R SF +R Y+ + IR VR DQ+S T L+YL +G V F + EYL+P ++LK
Sbjct: 218 RPSFTNRGASYSAFGIQIRAVRPDQTSQTNVLHYLNDGQVTFRFSWRKNEYLIPAVMILK 277
Query: 192 ALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPL----VSERVKIILAEVQDL--SLTTRL 245
AL DT+D EIF+ G VGS L +++R++++L + +L R
Sbjct: 278 ALCDTSDREIFD--------------GIVGSDLSNSFLTDRLELLLRGFKKRYPTLQNRT 323
Query: 246 QCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDNN--DKFNLLIFMLQKLFSL 303
Q LQ++G+ F+ V ++ Y V + V+ + VHL + N DK LL+FM++KL+SL
Sbjct: 324 QVLQYLGDKFRFVFQASADKTDYEVGQEVLNRIVLVHLGNGNNEDKSKLLLFMIRKLYSL 383
Query: 304 VDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNL 363
V DNPD+ Q+QE+LL G L + +KEK++++L+ I+ +I N G +F +
Sbjct: 384 VAGECSPDNPDATQHQEVLLGGFLYGMIIKEKIDEYLQNIISQIRADI-NRGMAINFKDR 442
Query: 364 ANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRA 423
+ +V+ + ++ IG+ ++ L TG L +Q+GLDLQQ +GYTV AE++NF RFIS FR
Sbjct: 443 KYMSRVLMR-VNENIGSKLQYFLSTGNLVSQSGLDLQQVSGYTVVAEKINFYRFISHFRM 501
Query: 424 VHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIR 483
VHRG+ FA L+TT+VRKLLPESWGFLCPVHTPDG PCGLLNH C +++ ++ ++
Sbjct: 502 VHRGSFFAQLKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHFAHKCSIST---TQSDV- 557
Query: 484 DFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRR 543
T + +L +G + S +GP ++ V LDGR++G ++ + + LR
Sbjct: 558 ------TKVPSLLYSLG-VSSASHTFAAGP-SLCCVQLDGRIIGWTSHAQGKIIADTLRF 609
Query: 544 LKVSAAS-VIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIG 602
LKV + +P DLE+GYVP S G YPGLYLF + +RPVR + L E+ ++G
Sbjct: 610 LKVEGKTDGLPLDLEIGYVPPSTKGQYPGLYLFAGHSRMMRPVRYLPLDKED-----IVG 664
Query: 603 PFEQVFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQM 662
PFEQV+M I + +H E PT +LS++ANLTP+SD NQSPRNMYQCQM
Sbjct: 665 PFEQVYMNIAVTQQEIQNNIH----SHVEFTPTNILSILANLTPFSDFNQSPRNMYQCQM 720
Query: 663 AKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGY 722
KQTMG AL R+D KLY LQ+ QTPIV+ N Y YG+D +P GTNA+VAV++YTGY
Sbjct: 721 GKQTMGTPGVALCHRSDNKLYRLQSGQTPIVKANLYDDYGMDNFPNGTNAVVAVISYTGY 780
Query: 723 DMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKD--AKSLHSVID 780
DM+DAMI+NKS+ +RG +G +Y+ E IDLS + N+ D + F D K + +D
Sbjct: 781 DMDDAMIINKSADERGFGYGTMYKVEKIDLSLNRNRGDPVSQHFGFGSDDWPKEWLNKLD 840
Query: 781 SDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAV--DMKNSKNLPQKA 838
DGLP++G + G+P C+ +D N + + SE +++ V + D N Q
Sbjct: 841 DDGLPHIGTYVEEGDPICAYFDDVVNKTKIKTYHSSEPGYIEEVNLIGDESNKFQELQTV 900
Query: 839 NIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTI 898
+I++R R P IGDKFSSRHGQKGVCS+ WP +DMPFS TG++PD+IINPHAFPSRMTI
Sbjct: 901 SIKYRIRRTPQIGDKFSSRHGQKGVCSRKWPTVDMPFS-ETGIQPDVIINPHAFPSRMTI 959
Query: 899 AMLLESVAAK 908
M +ES+A K
Sbjct: 960 GMFVESLAGK 969
>gi|432901774|ref|XP_004076940.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2-like [Oryzias
latipes]
Length = 1135
Score = 692 bits (1785), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/881 (42%), Positives = 538/881 (61%), Gaps = 57/881 (6%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR + SY GKL+AD+ + ++++ + GQ P+M+K+R C+L G ++LV
Sbjct: 103 CRGRRCSYKGKLVADISWAINGVPKGIIKQ--SLGQVPIMVKSRLCNLHGMSPKELVKHH 160
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
EEA EMGGYFI+NG+E+V R +I+P++NYP++M R ++ R +GYT V +RCV+ D +
Sbjct: 161 EEAEEMGGYFIVNGIEKVVRMLIMPRRNYPIAMSRPKWKSRGQGYTQYGVSMRCVKDDHT 220
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
++ L L+YL NG+V L F Q + + LP+G LKALVD D +I+ L +E
Sbjct: 221 AINLNLHYLENGTVMLNFIYQKELFFLPLGFALKALVDFTDFQIYQELI------KGRED 274
Query: 218 GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRD 277
+ VSE +++++ E TTR + L ++GE F+ ++ + + A ++ +
Sbjct: 275 NSFYKTCVSEMLRVVMEE----GCTTRSKVLTYLGERFRVKLNLPEWYTNEQCANILLNE 330
Query: 278 YIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLE 337
I +HL + +KF LL M +KLFS + +NPDS+ QE+L PG L ++LKE++
Sbjct: 331 CICIHLKSDTEKFYLLCLMSRKLFSHAKQECMEENPDSIMCQEVLTPGQLYLMFLKERMT 390
Query: 338 DWLRKGKKLIQDEIENNGKKF--DFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQT 395
WL ++ + G K ++ N+ K++ N + E +L TG L ++T
Sbjct: 391 AWLVS----VKLSFDKRGSKVFARGWSTENVIKML--NMGSDVTKPFEYLLATGNLNSKT 444
Query: 396 GLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTP 455
GL + Q +G V A++LNF+R++S FR VHRGA+FA +RTTSVRKLLPESWGFLCPVHTP
Sbjct: 445 GLGMLQNSGLCVVADKLNFIRYLSHFRCVHRGAAFAKMRTTSVRKLLPESWGFLCPVHTP 504
Query: 456 DGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPA 515
DGEPCGL+NHMT++C V + S TS+ +L +G+ P V P
Sbjct: 505 DGEPCGLMNHMTASCEVVAA----------SSPTTSLPALLCSLGVTP-----VDGTPAQ 549
Query: 516 VLS----VLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGA-YP 570
S V+LDG VVG + + VV +RR KV +P E+ VP + + YP
Sbjct: 550 AFSDCYPVVLDGSVVGWVETDLAPAVVDAMRRFKVLRERKVPPWTEIVLVPKTGKASLYP 609
Query: 571 GLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHE 630
GL+LFT+P + +RPV+N++L +E IG FEQ++ + G A TH+
Sbjct: 610 GLFLFTTPCRMMRPVQNLALGKQE-----FIGTFEQLYTNV----GILEEEIEAGVTTHQ 660
Query: 631 EIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQT 690
E+ P MLSVVAN P+SDHNQSPRNMYQCQM KQTMGF + + R+D KLY LQTPQ+
Sbjct: 661 ELFPHSMLSVVANFIPFSDHNQSPRNMYQCQMGKQTMGFPLHSFMDRSDNKLYRLQTPQS 720
Query: 691 PIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETI 750
+VR Y Y +D YP+GTNAIVAV++YTGYDMEDAMI+NKSS +RG HG IY+TE +
Sbjct: 721 ALVRPYMYDHYNLDNYPSGTNAIVAVISYTGYDMEDAMIVNKSSWERGFAHGSIYKTELV 780
Query: 751 DLSDDGNKVDRGQK--LFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSW 808
DL+D KV RG+ +F ++ +D+DGLP VG ++ G+P+ S + T
Sbjct: 781 DLAD---KV-RGEDAVVFGTKPGDPKVNDKLDADGLPRVGSVLQYGDPFYSYINLNTGQS 836
Query: 809 RTNSRKGSESVFVDYVAVDMKNSKNLP-QKANIRFRHTRNPIIGDKFSSRHGQKGVCSQL 867
+ K E+ VD + + +S + ++ I R RNP IGDKF+SRHGQKG+ S+L
Sbjct: 837 CVHFYKSQEACVVDNIKICSNDSGSGQFKRICITTRVPRNPTIGDKFASRHGQKGILSRL 896
Query: 868 WPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
WP DMPF+ +GM PD++ NPH FPSRMTI ML+ES+A K
Sbjct: 897 WPAEDMPFTE-SGMTPDILFNPHGFPSRMTIGMLIESMAGK 936
>gi|296803847|ref|XP_002842776.1| DNA-directed RNA polymerase I subunit RPA2 [Arthroderma otae CBS
113480]
gi|238846126|gb|EEQ35788.1| DNA-directed RNA polymerase I subunit RPA2 [Arthroderma otae CBS
113480]
Length = 1243
Score = 692 bits (1785), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 384/906 (42%), Positives = 548/906 (60%), Gaps = 73/906 (8%)
Query: 38 CRQAKISYTGKLMADVEFQYLDA-GSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
CR+ +Y GKL A +E++ + VRE GQ P+ML++ RCHL+ A +LV
Sbjct: 127 CRERHATYRGKLRARLEYRVNNGEWKESVRE---LGQVPIMLRSNRCHLEKATPSQLVER 183
Query: 97 KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQ 156
KEE+ E+GGYF++NG E++ R +I+ K+N+P +++R+SF+ R YT + IR VR DQ
Sbjct: 184 KEESEELGGYFVVNGNEKLIRMLIVGKRNFPTAIIRNSFQKRGSAYTKFGIQIRSVRPDQ 243
Query: 157 SSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKE 216
+S T L+YL +G+V L F + EYL+PV +VLKAL++TND EIF L +++
Sbjct: 244 TSQTNVLHYLSDGNVTLRFSWRKNEYLVPVMMVLKALIETNDREIFERLVG------RED 297
Query: 217 KGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIR 276
+ + V++RV+++L + + +R +C ++G F+ V+ + V +R
Sbjct: 298 SLGIENTFVTDRVELLLRTYKAYGVHSRSKCRAYLGSKFRFVLGMPEDVPDEDVGTEFLR 357
Query: 277 DYIFVHLND-------NNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
+ HL + +NDKFN+++FM++KL++LV DNPD++ NQE+LL G+L
Sbjct: 358 KIVLPHLGNQNVTESQDNDKFNMILFMIRKLYTLVAGDCAPDNPDAISNQEVLLGGYLYG 417
Query: 330 IYLKEKLEDWLRKGKKLIQD-EIENNGKKFD--FFNLANIKKVMEKNPSKQIGTSIETML 386
+ LKE+LE+WL+ +++D + N KF F + KV+ + ++ IG ++E L
Sbjct: 418 MLLKERLEEWLKSVGPIVRDWRMRNQDTKFTDPKFEREFLAKVIGRT-NENIGGALEYFL 476
Query: 387 KTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESW 446
TG L + TGLDLQQ +GYTV AE++NF RFIS FR +HRG+ FA L+TT+VRKLLPESW
Sbjct: 477 STGNLVSPTGLDLQQPSGYTVMAEKINFYRFISHFRMIHRGSFFAQLKTTTVRKLLPESW 536
Query: 447 GFLCPVHTPDGEPCGLLNHMTSTCRVA-SYYDSRGNIRDFSKMRTSILRVLIGVGMIPSL 505
GFLCPVHTPDG PCGLLNH+ C ++ S D G + VL G+G+
Sbjct: 537 GFLCPVHTPDGSPCGLLNHLAHKCLISTSNLDVSG-----------VPGVLAGLGVTSES 585
Query: 506 PKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSL 565
+ P V L+G+++G + + LR KV IP +LE+GYVP S
Sbjct: 586 SCSTEESIP----VQLNGKILGYCTPKQSRAIADTLRYWKVQGHKHIPVELEIGYVPSSS 641
Query: 566 GGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAF 625
GG YPG+Y+F+ + RPVR + L ++ +GPFEQ +MEI C RN
Sbjct: 642 GGQYPGVYMFSEAARMYRPVRYLPL-----DKLDYVGPFEQPYMEIACIASDI---RNGI 693
Query: 626 PATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHL 685
+TH E PT +LS++AN+TP+SD NQSPRNMYQCQM KQ MG A+ +R D KLY L
Sbjct: 694 -STHIEFDPTHILSILANMTPFSDFNQSPRNMYQCQMGKQAMGTPGTAIDYRTDNKLYRL 752
Query: 686 QTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIY 745
QT QTP+VR Y YG+D +P G NA+VAV++YTGYDM+DAMI+NKSS +RG +G IY
Sbjct: 753 QTGQTPVVRPPLYNAYGLDNFPNGMNAVVAVISYTGYDMDDAMIINKSSHERGFGYGTIY 812
Query: 746 QTETIDLSDDGNKVDRGQKLFRRNKD-----------AKSLHSVIDSDGLPYVGQMIHPG 794
+T+ L D K RG+ +R+ + +D DGLP++G + G
Sbjct: 813 KTKVYALDD---KESRGRGASKRSITKLFGFAPGGLIKAEWKAQLDEDGLPHIGAKVSEG 869
Query: 795 E----PYCSIYDKTTNSWRTNSR-------KGSESVFVDYVAVDMKNSKN-LPQKANIRF 842
+ YD T+++ + K E +VD V + + N + Q +I++
Sbjct: 870 SLVGAWHTVQYDPATDTYVNVDKQTHFLKYKDGEEGYVDSVRILGAETGNEVCQAVSIKY 929
Query: 843 RHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLL 902
R R P+IGDKFSSRHGQKGV SQLWP DMPFS +G++PD+IINPHAFPSRMTI M +
Sbjct: 930 RVPRRPVIGDKFSSRHGQKGVLSQLWPSTDMPFS-ESGIQPDVIINPHAFPSRMTIGMFV 988
Query: 903 ESVAAK 908
ES+A K
Sbjct: 989 ESLAGK 994
>gi|254582667|ref|XP_002499065.1| ZYRO0E02838p [Zygosaccharomyces rouxii]
gi|238942639|emb|CAR30810.1| ZYRO0E02838p [Zygosaccharomyces rouxii]
Length = 1196
Score = 691 bits (1783), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 383/884 (43%), Positives = 546/884 (61%), Gaps = 52/884 (5%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
RQ SY GKL+ + ++ ++ G E + G P+ML++ RCHL +LV K
Sbjct: 119 ARQRLSSYKGKLVIKLRWE-VNNGEETFTEVRDCGAVPIMLQSNRCHLYNMPPSELVKHK 177
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
EE+ E GGYFI+NG+E++ R +I+ ++N+PM+++R SF +R Y+ V IR VR DQ+
Sbjct: 178 EESDEFGGYFIINGIEKLIRMLIVQRRNHPMAIIRPSFANRGAAYSQFGVQIRSVRPDQT 237
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
S T L+YL +G V F + EYL+PV +++KAL D +D EIF+
Sbjct: 238 SQTNVLHYLHDGQVTFRFSWRKNEYLIPVVMIIKALCDISDREIFD-------------- 283
Query: 218 GAVGSPL----VSERVKIILAEVQDL--SLTTRLQCLQHIGEHFQPVIDGLQSESYYAVA 271
G +G L +++R++++L + L R Q LQ++G+ F+ V +S V
Sbjct: 284 GIIGPDLSNSFLTDRLELLLRGFKKRYPQLRNRTQVLQYLGDKFRIVFQAPPDKSDLDVG 343
Query: 272 ETVIRDYIFVHLND--NNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
+ V+ + VHLN N DK LL+FM++KL+SLV DNPD+ Q+QE+LL G L
Sbjct: 344 KEVLHRIVLVHLNGDTNEDKCRLLLFMIRKLYSLVAGACSPDNPDATQHQEVLLGGFLYG 403
Query: 330 IYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTG 389
+ LKEK++++++ I+ +I N G +F + + +V+ + + IG+ ++ L TG
Sbjct: 404 MILKEKVDEYMQSIIAQIRTDI-NRGIPANFKDRKYMTRVLMR-VNDNIGSKMQYFLSTG 461
Query: 390 RLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFL 449
L +Q+GLDLQQ +GYTV AE++NF RFIS FR VHRG+ FA L+TT+VRKLLPESWGFL
Sbjct: 462 NLVSQSGLDLQQVSGYTVVAEKINFYRFISHFRMVHRGSFFAQLKTTTVRKLLPESWGFL 521
Query: 450 CPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLV 509
CPVHTPDG PCGLLNH CR+++ D S+ I +L +G+ P+
Sbjct: 522 CPVHTPDGAPCGLLNHFAHKCRISTKQS------DVSQ----IPSILYSLGVSPASQAFA 571
Query: 510 KSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASV-IPDDLEVGYVPLSLGGA 568
P++ V +DG++VG + + LR KV + +P DLE+GYVPLS G
Sbjct: 572 AG--PSLCCVQIDGKIVGWTSHEQGRIIADTLRLWKVEGKTPGLPLDLEIGYVPLSSRGQ 629
Query: 569 YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPAT 628
YPGLY+F + +RPVR + L E+ ++GPFEQV+M I + N T
Sbjct: 630 YPGLYIFGGHSRMMRPVRYLPLDKED-----IVGPFEQVYMNIAVTP--QELQNNVH--T 680
Query: 629 HEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTP 688
H E PT +LS++ANLTP+SD NQSPRNMYQCQMAKQTMG AL R+D KLY LQ+
Sbjct: 681 HVEFTPTNILSILANLTPFSDFNQSPRNMYQCQMAKQTMGTPGVALCHRSDNKLYRLQSG 740
Query: 689 QTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTE 748
QTP+V+ N Y YG+D +P G NA+VAV++YTGYDM+DAMI+NKS+ +RG +G +Y+TE
Sbjct: 741 QTPVVKANLYDDYGMDNFPNGINAVVAVISYTGYDMDDAMIINKSADERGFAYGTMYKTE 800
Query: 749 TIDLSDDGNKVDRGQKLFRRNKDA--KSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTN 806
+DLS + ++ D + F D K +D DGLP++G + G+P + +D T N
Sbjct: 801 KVDLSLNRSRGDPISQHFGFGNDEWPKEWLEKLDEDGLPFIGTYVEEGDPIVAYFDDTLN 860
Query: 807 SWRTNSRKGSESVFVDYVAV--DMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVC 864
+ + +E +++ V + D N Q +I++R R P IGDKFSSRHGQKGVC
Sbjct: 861 RTKVKTYHSTEPAYIEEVNLIGDESNKLQELQTVSIKYRIRRTPQIGDKFSSRHGQKGVC 920
Query: 865 SQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
S+ WP +DMPFS TG++PD+IINPHAFPSRMTI M +ES+A K
Sbjct: 921 SRKWPTVDMPFS-ETGIQPDVIINPHAFPSRMTIGMFVESLAGK 963
>gi|300120856|emb|CBK21098.2| unnamed protein product [Blastocystis hominis]
gi|300175006|emb|CBK20317.2| unnamed protein product [Blastocystis hominis]
Length = 1151
Score = 691 bits (1783), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 388/948 (40%), Positives = 556/948 (58%), Gaps = 84/948 (8%)
Query: 8 DFEPLRELVRHHIESFDYMLDEGLS----------------------------------- 32
D E L++LVR HIES+++MLD+GLS
Sbjct: 31 DSERLKDLVRFHIESYNFMLDKGLSLAVRDIFPLEVENPDNKQVLRIWIQDVKIGYPIKE 90
Query: 33 ------EMFDH-CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHL 85
+ H CR+ ISYT L+A V Q D G VV ER N GQ P+M+ + RCHL
Sbjct: 91 DGSSETRLLPHECRERGISYTSPLIAYVAHQVND-GQIVVTER-NLGQLPIMVGSNRCHL 148
Query: 86 QGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDK 145
+ V+ EE E+GGYFI NGLER+ R + + +++ +++ R SF R YT
Sbjct: 149 SRMTPAERVNCGEEVYELGGYFICNGLERMIRLLQVTRRHIIVALDRPSFTKRGPEYTSL 208
Query: 146 AVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHL 205
++CVR+D SS+T+ L+YL +G L ++++ +E+L+PV ++LKAL D +D EI+ L
Sbjct: 209 GCQMKCVREDMSSMTVTLHYLRDGRCTLRWFIRKQEFLVPVVLILKALKDCSDREIYEQL 268
Query: 206 TCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSE 265
+G + +S+R++++L E +++ LTTR +CL ++G F+ ++
Sbjct: 269 M----------RGDSNNTFLSDRLELLLRESKNMHLTTRRECLAYLGSRFRILLYMSSRY 318
Query: 266 SYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPG 325
S V E +++ YI VHL N KF LL+ M+ KL+ L + DN DSL N E+LL G
Sbjct: 319 SDVEVGEELLKRYILVHLKSNEAKFALLLEMISKLYKLANKEIPPDNADSLMNHELLLGG 378
Query: 326 HLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETM 385
HL+ ++LKEKLE++L ++ I E++ + +K D ++ A IKK +++ IG +
Sbjct: 379 HLMCMFLKEKLEEFLIGVRQNIAREVDRHKEKIDLYDTAWIKKALDRQ--SDIGKKAYYL 436
Query: 386 LKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPES 445
L TG + + TGLDLQQ AGYT+ AE+LN R++S FR+VHRG F ++TT RKLLP+S
Sbjct: 437 LATGNIISSTGLDLQQAAGYTIVAEKLNHWRYLSHFRSVHRGQFFTEMKTTQPRKLLPDS 496
Query: 446 WGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSL 505
WGFLC VHTPDG PCGLLNH+T+TC + + D + R+ +G++P+
Sbjct: 497 WGFLCCVHTPDGAPCGLLNHLTATCSITT---------DVVPA-PQLARLCQALGLVPAD 546
Query: 506 PKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLS- 564
LV + V +G+++G + +++ LR LK+ A +P LE+ VP
Sbjct: 547 SPLVYGN--HYVPVFFNGQLLGRVLAAQAAAFCDQLRLLKLDGAK-LPACLEIVCVPAGE 603
Query: 565 LGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNA 624
GG +P +YL T + RPVR++ + E IGP EQV++EI C + + R+
Sbjct: 604 QGGPWPCVYLSTDAARMQRPVRHLG-----TGKTEWIGPLEQVYLEIACVE--EDIRKGV 656
Query: 625 FPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYH 684
TH E+ P MLS++A+LTP+SD NQSPRNMYQCQM KQTMG + R D K+Y
Sbjct: 657 --TTHIEVSPANMLSLIASLTPFSDFNQSPRNMYQCQMGKQTMGTPGLSWTHRTDTKMYR 714
Query: 685 LQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQI 744
LQTPQ PIV Y ++ D YP G N++VAV++YTGYD+EDAMILNKSS +RG H +
Sbjct: 715 LQTPQAPIVHNALYREFLFDSYPQGMNSVVAVISYTGYDLEDAMILNKSSFERGFAHASV 774
Query: 745 YQTETIDLSDDGNKVDRGQKLFR--RNKDAKSLHSV--IDSDGLPYVGQMIHPGEPYCSI 800
Y++ IDL D + + R R A S S +D DGLP +G + G+ C++
Sbjct: 775 YKSHDIDLVDPKDPATKSLIFKRPPREAIASSNPSALRLDPDGLPPIGLFVQKGDAICAV 834
Query: 801 YDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQ 860
Y+ T SE +VD V + + Q+ NI+FR+ RNP++GDKFSSRHGQ
Sbjct: 835 YNTETGKTSLRFHDSSEPAYVDEVRILDGDPALGVQRVNIKFRYNRNPVVGDKFSSRHGQ 894
Query: 861 KGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
KGV S LWP IDMPF+ +G+ PD IINP+AFPSRMTI ML+ES+A K
Sbjct: 895 KGVLSVLWPQIDMPFTA-SGITPDCIINPNAFPSRMTIGMLIESMAGK 941
>gi|348507167|ref|XP_003441128.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 1
[Oreochromis niloticus]
Length = 1134
Score = 691 bits (1782), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 371/877 (42%), Positives = 535/877 (61%), Gaps = 50/877 (5%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR + SY GK++ADV + ++++ + G P+M+K++ C+L G ++LV
Sbjct: 103 CRGRRCSYKGKIVADVSWSINGVPKGIIKQ--SLGHVPIMVKSKLCNLHGMSPKELVEHH 160
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
EEA EMGGYFI+NG+E+V R +I+P++NYP++M R +++R +GYT + +RCVR++ +
Sbjct: 161 EEAEEMGGYFIVNGIEKVIRMLIMPRRNYPIAMSRPKWKNRGQGYTQYGISMRCVREEHT 220
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
++ + L+YL NG+V L F Q + + LP+G LKALVD D +I+ L +E
Sbjct: 221 AINMNLHYLENGTVMLNFIYQKELFFLPLGFALKALVDFTDFQIYQELI------KGRED 274
Query: 218 GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRD 277
+ VSE ++I+ E + TTR + L ++GE F+ ++ + + A ++ +
Sbjct: 275 NSFYKTCVSEMLRIVTEE----NCTTRSKVLNYLGERFRVKMNLPEWYTNEQCANFLLNE 330
Query: 278 YIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLE 337
I +HL + +KF LL M +KLF+ + +NPDS+ QE+L PG L ++LKE+L
Sbjct: 331 CICIHLKSDVEKFYLLCLMTRKLFTFAKQECMEENPDSIVCQEVLTPGQLYLMFLKERLT 390
Query: 338 DWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGL 397
WL ++ + G K ++ + N + S E +L TG L ++TGL
Sbjct: 391 AWLVS----VKLSFDKRGSKVTG-GWSSEMMIKMLNMGTDLTRSFEYLLATGNLQSKTGL 445
Query: 398 DLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDG 457
+ Q G V A++LNF+R++S FR VHRGA+FA +RTTSVRKLLPESWGFLCPVHTPDG
Sbjct: 446 GMLQNTGLCVVADKLNFIRYLSHFRCVHRGAAFAKMRTTSVRKLLPESWGFLCPVHTPDG 505
Query: 458 EPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVL 517
EPCGL+NHMT++C + + + TS+ +L +G+ P V P
Sbjct: 506 EPCGLMNHMTASCEIVA----------LTLSTTSLPGLLCSLGVTP-----VDGTPGRAF 550
Query: 518 S----VLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGA-YPGL 572
+ V+LDG VVG + + VV LRR KV IP E+ VP + + YPGL
Sbjct: 551 ADCYPVVLDGAVVGWVEADLAPVVVESLRRFKVLREKKIPPWTEIVLVPKTGKASLYPGL 610
Query: 573 YLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEI 632
+LFT+P + VRPV+N++ +E LIG FEQ+++ + + R TH+E+
Sbjct: 611 FLFTTPCRMVRPVQNLAFGKQE-----LIGTFEQLYINVGILENEIEPRV----TTHQEL 661
Query: 633 HPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPI 692
P MLSVVAN PYSDHNQSPRNMYQCQM KQTMGF + + R+D KLY LQTPQ+P+
Sbjct: 662 FPHSMLSVVANFIPYSDHNQSPRNMYQCQMGKQTMGFPLHSFMDRSDNKLYRLQTPQSPL 721
Query: 693 VRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDL 752
VR Y YG+D YP+GTNAIVAV++YTGYDMEDAMI+NKSS +RG HG IY+TE +DL
Sbjct: 722 VRPYMYDHYGLDNYPSGTNAIVAVISYTGYDMEDAMIVNKSSWERGFAHGSIYKTELVDL 781
Query: 753 SDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNS 812
++ K + G + D K + +D+DGLP++G ++ G+P+ S + T +
Sbjct: 782 AEK-VKGEDGVVFGTKPGDPK-VKEKLDADGLPFIGSVLQYGDPFYSYINLNTGQTFISY 839
Query: 813 RKGSESVFVDYVAVDMKN-SKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDI 871
K E+ VD + V + ++ I R RNP IGDKF+SRHGQKG+ S+LWP
Sbjct: 840 YKSQEACIVDNIKVCSNDGGSGRFKRVCITVRVPRNPTIGDKFASRHGQKGILSRLWPAE 899
Query: 872 DMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
DMPF+ +GM PD++ NPH FPSRMTI ML+ES+A K
Sbjct: 900 DMPFTE-SGMTPDILFNPHGFPSRMTIGMLIESMAGK 935
>gi|452840518|gb|EME42456.1| hypothetical protein DOTSEDRAFT_155234 [Dothistroma septosporum
NZE10]
Length = 1207
Score = 690 bits (1781), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 387/905 (42%), Positives = 552/905 (60%), Gaps = 71/905 (7%)
Query: 38 CRQAKISYTGKLMADVEFQYLDA-GSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
CR+ +Y G+ +E++ D + VR+ FG P+ML++ RCHL+G ++LV+
Sbjct: 116 CRERHCTYRGRFRGRLEYRINDGEWAETVRD---FGHLPIMLRSNRCHLEGLSPKELVNR 172
Query: 97 KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQ 156
+EE E+GGYFI+NG+E++ R +I+ ++N+P++++R SF +R YT AV IR VRKDQ
Sbjct: 173 REETEELGGYFIVNGIEKLIRMLIVNRRNFPLALIRPSFENRGATYTKFAVQIRSVRKDQ 232
Query: 157 SSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKE 216
+S + L+YL +G+V F + EYL+PV +VLKALV+TND EIF +
Sbjct: 233 TSQSNTLHYLNDGNVIFRFSWRKNEYLVPVMLVLKALVETNDREIFEGIVGP-----AGG 287
Query: 217 KGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIR 276
KG V++RV+ +L + L + + +IG F+PV++ ++ S +R
Sbjct: 288 KGLESRQFVTDRVEHLLRTFKAFPLHGKAKARAYIGAKFRPVLNVPEALSDQEAGTEFVR 347
Query: 277 DYIFVHLND-------NNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
+ HL +NDKF +L+FM +KL+SL + DNPD++QNQEILLPG L
Sbjct: 348 KIVLPHLGSYDVTEAQDNDKFRMLVFMTRKLYSLAEGECTLDNPDAVQNQEILLPGFLFG 407
Query: 330 IYLKEKLEDWLRKGKKLIQDEIENNGK--KFDFFNLANIKK----VMEKNPSKQIGTSIE 383
+ +KE++E+WL I D + G+ ++ F +K + + ++ +G ++
Sbjct: 408 MIIKEQVEEWLNS----IGDTLRIYGRVNQYPLFTSKEFEKDFMAKVVRRTNENLGQKLD 463
Query: 384 TMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLP 443
+ TG L + +GLDLQQ +G+TV AE++NF RFIS FR VHRG+ FA L+TT+VRKLLP
Sbjct: 464 YFMSTGNLLSPSGLDLQQVSGFTVVAEKINFYRFISHFRMVHRGSFFAQLKTTTVRKLLP 523
Query: 444 ESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIP 503
ESWGFLCPVHTPDG PCGLLNH+ C V++ + D S + I + +GV +
Sbjct: 524 ESWGFLCPVHTPDGSPCGLLNHLAHKCLVST------DNTDASHVPALIAQ--LGVSSMA 575
Query: 504 SLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPL 563
KL S + V LDGR++G + + + LR KV +P DLE+G +PL
Sbjct: 576 D-AKLEDS-----VVVQLDGRILGFCSPKQAKVISDTLRYWKVEGTHHVPVDLELGLIPL 629
Query: 564 SLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRN 623
S GG YPGL++F+ + +RPV+ + L ++ ++GPFEQ FM I C D
Sbjct: 630 SNGGQYPGLFMFSEAARMLRPVKYLPLGKQD-----IVGPFEQPFMSIACTDP----EIA 680
Query: 624 AFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLY 683
+ +TH E T +LS+VAN TP+S+ NQSPRNMYQCQM KQTMG ALK+R D K Y
Sbjct: 681 SNDSTHVEYDVTNILSIVANQTPFSNFNQSPRNMYQCQMGKQTMGTPGTALKYRTDNKSY 740
Query: 684 HLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQ 743
LQT QTP+VR + +YG+D +P GTNA+VAV++YTGYDM+DAMILNKS+ +RG HG
Sbjct: 741 RLQTGQTPVVRAPKHNEYGLDNFPNGTNAVVAVISYTGYDMDDAMILNKSAHERGFGHGT 800
Query: 744 IYQTETIDLSDDGNKVDRGQK------LFRRNKDAK-SLHSVIDSDGLPYVGQMIHPGEP 796
IY+ + IDL+++ NK RG+ F N K S +D DGL +G + G+
Sbjct: 801 IYKAKKIDLAEE-NKQGRGRSGITHVFGFAPNSIIKASWRETLDDDGLGRIGWKVKEGDA 859
Query: 797 ----YCSIYDKTTNSW-------RTNSRKGSESVFVDYVA-VDMKNSKNLP-QKANIRFR 843
Y + D T + + K SE F++ + + ++ N P Q +IRFR
Sbjct: 860 IAASYSVVKDPLTGDYVNQDGITHIHKYKESEEAFIEEIKLIGNESGNNDPCQAVSIRFR 919
Query: 844 HTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLE 903
R+P+IGDKFSSRHGQKGVCSQ WP IDMPF+ +GM+PD+IINPHAFPSRMTI M +E
Sbjct: 920 IPRSPVIGDKFSSRHGQKGVCSQKWPMIDMPFT-ESGMQPDVIINPHAFPSRMTIGMFVE 978
Query: 904 SVAAK 908
S+A K
Sbjct: 979 SLAGK 983
>gi|350581976|ref|XP_003481167.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 [Sus scrofa]
Length = 1079
Score = 689 bits (1779), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 390/903 (43%), Positives = 534/903 (59%), Gaps = 63/903 (6%)
Query: 12 LRELVRHHIESFDYMLDEGLSEMFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNF 71
L+EL R H+ESF+Y + EGLS H QA IS+ ++ S V ++F
Sbjct: 35 LQELTRAHVESFNYAVREGLS----HAVQADISWA-----------VNGISKGVIKQF-L 78
Query: 72 GQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMV 131
G P+M+K++ C+L + L+ EEA EMGGYFI+NG+E+V R +I+P++N+P++MV
Sbjct: 79 GYVPIMVKSKLCNLYSLSPRALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMV 138
Query: 132 RSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLK 191
R ++ R GYT V + CVR++ S+V + L+YL NG+V L F + + + LP+G LK
Sbjct: 139 RPKWKSRGPGYTQYGVSMHCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALK 198
Query: 192 ALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHI 251
ALV +D +IF L KE + VS+ ++I++ E T+ Q L ++
Sbjct: 199 ALVSFSDYQIFQELI------KGKEDDSFLRNSVSQMLRIVMEE----GCATQKQVLNYL 248
Query: 252 GEHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSD 311
GE F+ ++ AE + + I +HL N +KF +L M +KLF+L + +
Sbjct: 249 GERFRVKVNLPDWYPNEQAAEFLFNECICIHLKSNTEKFYMLCLMTRKLFALAKGECMEE 308
Query: 312 NPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVME 371
NPDSL NQE+L PG L ++LKEKLE WL K I + + N N+ K++
Sbjct: 309 NPDSLVNQEVLTPGQLFLMFLKEKLEAWLVSIKIAIDKKAQKTSVSL---NTENLMKIL- 364
Query: 372 KNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFA 431
N + E +L TG L ++TGL Q +G V A++LNF+R++S FR VHRGA FA
Sbjct: 365 -NLGIDLTKPFEYLLATGNLRSKTGLGFLQDSGLCVVADKLNFIRYLSHFRCVHRGADFA 423
Query: 432 GLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTS 491
+RTT+VR+LLPESWGFLCPVHTPDGEPCGL+NH+T+TC V + + S
Sbjct: 424 KMRTTTVRRLLPESWGFLCPVHTPDGEPCGLMNHLTATCEVVTQF----------VYTAS 473
Query: 492 ILRVLIGVGMIPSLPKLVKSGPPAVLS----VLLDGRVVGVIPSSEIEKVVAHLRRLKVS 547
I +L +G+ P V S P S VLLDG +VG + LR KV
Sbjct: 474 IPALLCSLGVTP-----VDSAPHRRYSECYPVLLDGVMVGWADKELAPSIADSLRHFKVL 528
Query: 548 AASVIPDDLEVGYVPLSLGGA-YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQ 606
IP +EV +P++ + YPGLYLFT+P + VRPV+N+ L EE LIG EQ
Sbjct: 529 REKRIPPWMEVVLIPMTGKPSLYPGLYLFTTPCRLVRPVQNLGLGREE-----LIGTMEQ 583
Query: 607 VFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQT 666
+FM + + A TH+E+ P +LSV+AN P+SDHNQSPRNMYQCQM KQT
Sbjct: 584 IFMNVAIFED----EVLAGVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQT 639
Query: 667 MGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMED 726
MGF + K R+D KLY LQTPQ+P+VR Y Y +D YP GTNAIVAV++YTGYDMED
Sbjct: 640 MGFPLLTFKDRSDNKLYRLQTPQSPLVRPYMYDYYDMDNYPIGTNAIVAVISYTGYDMED 699
Query: 727 AMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPY 786
AMILNK+S +RG HG +Y++E IDLS+ + D R D + +D DGLP+
Sbjct: 700 AMILNKASWERGFAHGSVYKSEFIDLSEKIKQGDDSLVFGVRPGDPRVAQK-LDDDGLPF 758
Query: 787 VGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHT 845
VG + G+PY S + T K E+ VD + V ++ + K I R
Sbjct: 759 VGAQLQYGDPYYSYLNLNTGESFVVYYKSKENCIVDNIKVCGNDTGSGRFKCVCITMRVP 818
Query: 846 RNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESV 905
RNP IGDKF+SRHGQKG+ S+LWP DMPF+ +GM PD++ NPH FPSRMTI ML+ES+
Sbjct: 819 RNPTIGDKFASRHGQKGILSRLWPVEDMPFTE-SGMVPDILFNPHGFPSRMTIGMLIESM 877
Query: 906 AAK 908
A K
Sbjct: 878 AGK 880
>gi|301119239|ref|XP_002907347.1| DNA-directed RNA polymerase I subunit RPA2, putative [Phytophthora
infestans T30-4]
gi|262105859|gb|EEY63911.1| DNA-directed RNA polymerase I subunit RPA2, putative [Phytophthora
infestans T30-4]
Length = 1179
Score = 689 bits (1779), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/969 (39%), Positives = 572/969 (59%), Gaps = 107/969 (11%)
Query: 10 EPLRELVRHHIESFDYMLDEGL----SEMF------------------------------ 35
E L++LV H++SF++ L EGL ++M
Sbjct: 39 EKLQKLVSPHLDSFNFFLTEGLDLAVADMCKVPVELPNQHRMDIWIENAQIGYPTTENQI 98
Query: 36 --------DHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQG 87
CRQ +SYT L+ + + V R + G+ P+M++++RCHL G
Sbjct: 99 TGEQKLLPSECRQRGVSYTAPLVVTLARSF-GGSQNVERLQRVVGEIPIMVRSKRCHLNG 157
Query: 88 ADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAV 147
LV +EEA EMGGYFI NG ER R + +P++++ M++ R +F +R + YT+ AV
Sbjct: 158 MAPTDLVKAREEANEMGGYFICNGNERCVRLLQMPRRHHIMAVRRGAFANRGDLYTELAV 217
Query: 148 VIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTC 207
++CV++DQS+VT+ ++YL +G+ + F ++ +E+++PVG+VLKAL D EI+ +
Sbjct: 218 FMKCVKRDQSAVTVTVHYLQDGNATVRFGVKKQEFMIPVGLVLKALYPLTDREIYERVL- 276
Query: 208 CYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQ----PVIDGLQ 263
+G + +S RV++IL E + SL TR + L ++G+HF+ V D +
Sbjct: 277 ---------RGDHENTYLSARVELILREAKKFSLYTRDEALAYLGKHFRFAMPYVYDNMN 327
Query: 264 SESYYAVAETVIRDYIFVHL----NDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQ 319
+ V ++ D++FVH+ K LL ML+KL++ DN DS+ N
Sbjct: 328 N---VEVGSKLLDDFLFVHIPKGEKGRTQKVELLCLMLRKLYAFAKGDVPEDNADSVMNH 384
Query: 320 EILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIG 379
E+LLPGHL + +KEKL++ L + I E +N K+ + ++K+ E+ P+ IG
Sbjct: 385 ELLLPGHLYLMIMKEKLQESLVAMRANILKETQNK-KRAVVMDQVFLRKMWERTPN--IG 441
Query: 380 TSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVR 439
++ L TG L + +GLDL Q AGYT+ AE+LN+ R+ S FR+VHRG F ++TT+VR
Sbjct: 442 NAMTYFLNTGNLRSSSGLDLLQIAGYTIVAEKLNYYRYFSHFRSVHRGQFFTEMKTTAVR 501
Query: 440 KLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGV 499
KLLP+SWGFLCPVHTPDG PCGLLNH+ C + + + + D+ + + R L +
Sbjct: 502 KLLPDSWGFLCPVHTPDGSPCGLLNHLAVECELVCHPAFKAD--DYLQQEVKLARFLASL 559
Query: 500 GMIPSLPKLVKSG--------PPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASV 551
GMIP+ SG P + L V+++G+V+G P+ +++ LR++K + +S
Sbjct: 560 GMIPT------SGYADGALIVPYSYLPVMMNGKVLGGAPAEVCKRIAEVLRKVKSAKSSE 613
Query: 552 ------IPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFE 605
I +LEV + + GG +PGLYL + RPV+ + +++ IE IGP E
Sbjct: 614 ERDANGIVSNLEVCLILPTRGGPFPGLYLSADAARMSRPVKQM-----DTKRIEYIGPME 668
Query: 606 QVFMEIRCPDGGDGGRRNAFPAT-HEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAK 664
QVFM+I C + + PAT H EI PT MLS+VA+LTP+SD+NQSPRNMYQCQMAK
Sbjct: 669 QVFMDIACT------KDDIRPATTHMEIKPTNMLSLVASLTPFSDYNQSPRNMYQCQMAK 722
Query: 665 QTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDM 724
QTMG ++ R+D K+Y +Q+PQ PIV+ +Y +DEYP GTNA+VAV++YTG+DM
Sbjct: 723 QTMGTPAHSIVHRSDNKMYRIQSPQIPIVQNERLREYQLDEYPLGTNAVVAVISYTGFDM 782
Query: 725 EDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLF----RRNKDAKSLHSVID 780
EDAMILNKSS +RG H +Y+ T+D+S +G + K + + + + +D
Sbjct: 783 EDAMILNKSSYERGFGHASVYKQLTVDISSNGKQGSATSKKYFSNIKTDGSGDYCSTKLD 842
Query: 781 SDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYV-AVDMKNSKNLPQKAN 839
DG P++GQ+++ G+P S D+TT K SE ++ V + +S + KA+
Sbjct: 843 RDGFPHIGQVVNHGDPVASWIDETTGLPSVQKHKESEPAIIEQVNMIGNSSSSSEFTKAS 902
Query: 840 IRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIA 899
I+ R RNP IGDKFSSRHGQKGV S LWP DMPFS +G+ PD+IINPHAFPSRMT+
Sbjct: 903 IKLRFCRNPTIGDKFSSRHGQKGVMSILWPQADMPFSE-SGISPDIIINPHAFPSRMTVG 961
Query: 900 MLLESVAAK 908
ML+ES+AAK
Sbjct: 962 MLIESMAAK 970
>gi|320592799|gb|EFX05208.1| DNA-directed RNA polymerase 1 subunit beta [Grosmannia clavigera
kw1407]
Length = 1290
Score = 689 bits (1778), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/898 (42%), Positives = 545/898 (60%), Gaps = 60/898 (6%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR+ +Y GKLMA E++ ++ G PV R + GQ P+M+K+ RCHL+G LV K
Sbjct: 135 CRERHSTYRGKLMATFEYR-INNGDPVEVVR-DLGQVPIMVKSNRCHLEGLSPAALVERK 192
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
EE+ E+GGYFI+NG+E++ R + + ++N+P ++ R SF++R YT ++ R VR D++
Sbjct: 193 EESEELGGYFIVNGIEKIIRLLQVGRRNFPHAINRPSFQNRGAAYTPYGIITRSVRPDET 252
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
S T L+YL +G++ F + E+L+PV ++LKALV+TND EIF + + K
Sbjct: 253 SQTNVLHYLKDGNITFRFSWRKNEFLIPVMMILKALVETNDREIFEAIVGPANSK----- 307
Query: 218 GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRD 277
GA + L ++RV+++L + L ++ ++GE F+ V+ + S Y V +R
Sbjct: 308 GAENTYL-TDRVELLLRTYEFYGLYSKSATRAYLGEKFRVVLGVPTTMSNYDVGTEFLRK 366
Query: 278 YIFVHLND-------NNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITI 330
+ VHL + + DKF +LIFM++KL++LV DNPD++QNQE+LL G L
Sbjct: 367 IVLVHLGNMDVTEAQDADKFRMLIFMIRKLYALVAGDCAVDNPDAVQNQEVLLGGFLYGQ 426
Query: 331 YLKEKLEDWL----RKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETML 386
LKEKL+++L R + N + F + + + + ++ IG ++E L
Sbjct: 427 ILKEKLDEFLSVSLRGALRDYWRRYPTNTMTTEAF-ARDFQAAVFRRSNENIGNALEYFL 485
Query: 387 KTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESW 446
TG L + +GLDLQQ +G+TV AE+LNFLRF+S FR +HRG+ FA L+TT+VRKLLPESW
Sbjct: 486 STGNLISASGLDLQQVSGFTVVAEKLNFLRFLSHFRMIHRGSFFAQLKTTTVRKLLPESW 545
Query: 447 GFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLP 506
GFLCPVHTPDG PCGLLNH+ CR+ + G I +++ ++ +G +
Sbjct: 546 GFLCPVHTPDGSPCGLLNHLAHKCRIIT-----GTID-----ASAVDAIVTELGAV---- 591
Query: 507 KLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLG 566
L + + V+LDGRVVG E +++ LR KV + IP +LE+GYVP S G
Sbjct: 592 SLSSASTEESVVVMLDGRVVGWCSPKEAKRIADTLRHWKVEGSHNIPAELEIGYVPQSNG 651
Query: 567 GAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFP 626
G+YPG+Y+ ++P + VRPV+ ++L E+ +GP EQ +M I + +
Sbjct: 652 GSYPGVYMASAPSRMVRPVKYLALDKED-----FVGPQEQPYMSIAVREQ----EVISGQ 702
Query: 627 ATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQ 686
TH E+ PT MLS++AN+TP+SD NQSPRNMYQCQM KQTMG AL R D K Y LQ
Sbjct: 703 TTHVELDPTNMLSILANMTPFSDFNQSPRNMYQCQMGKQTMGTPGTALAHRTDNKTYRLQ 762
Query: 687 TPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQ 746
T QTPIVR + YG D +P GTN +VAV++YTGYDM+DAMI+NKS+ +RG HG +Y+
Sbjct: 763 TGQTPIVRAPLHNAYGFDNFPNGTNVVVAVISYTGYDMDDAMIINKSAHERGFGHGSVYK 822
Query: 747 TETIDLSDDG--NKVDRGQKLFRRNKDA---KSLHSVIDSDGLPYVGQMIHPGEPYCSI- 800
T+ I L DD K+F A + ++D DGLPY+G + G+P +
Sbjct: 823 TKKITLKDDSRTRSAKHVGKMFGFAPGAFVSGQVRGLLDDDGLPYIGMRVKMGDPLVAWH 882
Query: 801 -----YDKT----TNSWRTNSRKGSESVFVDYV-AVDMKNSKNLPQKANIRFRHTRNPII 850
YD T K E +V+ V + +N L Q +++ R R+P I
Sbjct: 883 TVSADYDGTLVNRDGQTHYEKYKDGEDAYVEEVRLIGNENGNELLQTISVKLRIPRSPTI 942
Query: 851 GDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
GDKFSSRHGQKGVCSQ WP +DMPF+ +G++P++IINPHAFPSRMTI M +ES+A K
Sbjct: 943 GDKFSSRHGQKGVCSQKWPTVDMPFT-ESGLQPEVIINPHAFPSRMTIGMFIESLAGK 999
>gi|393235983|gb|EJD43534.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Auricularia delicata TFB-10046 SS5]
Length = 1221
Score = 689 bits (1777), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 383/890 (43%), Positives = 540/890 (60%), Gaps = 63/890 (7%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
R+ SY G++ A + + + VV + G PVM+++ RCHL+ A S +LV
Sbjct: 126 ARERLTSYRGRMTAKLTWSFNGGPEHVVTR--DCGLVPVMVRSVRCHLRNASSAELVRHH 183
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRK-DQ 156
EEA E GGYFI+NG ER+ R +ILP++N+ +S++R SF +R YT+ AV IRCVRK DQ
Sbjct: 184 EEAEEFGGYFIINGNERIVRYLILPRRNHVISLIRPSFTNRGASYTEYAVQIRCVRKGDQ 243
Query: 157 SSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCC-YDEKYKK 215
SSVT L+YL NGS L F + EY++P+ ++LKA V +D EIF + YD Y
Sbjct: 244 SSVTNTLHYLSNGSAMLRFSWRKNEYVVPIMLLLKAAVGASDREIFEGVIMKDYDNTY-- 301
Query: 216 EKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVI 275
+++RV+++L + SL T+ QCL ++G+ F+ V+ + S V ++
Sbjct: 302 ---------LTDRVELLLRSFKTYSLYTKEQCLDYLGKKFRVVLGLREDISNEEVGAWLL 352
Query: 276 RDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEK 335
+ VHL+D +K +LI+ML+KL+SLV DNPDS Q+QEILLPG L + +KE+
Sbjct: 353 NKVLLVHLDDLREKSRMLIYMLRKLYSLVSGDCAIDNPDSPQHQEILLPGSLYGMIVKER 412
Query: 336 LEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQT 395
LE+ L + L+ ++ N DF + + K+++K + +G + + TG L + +
Sbjct: 413 LEEALNAIRALVMMDVRNGAPTVDFQDGRYLGKILQK-VNFDVGARLSNFMATGNLVSPS 471
Query: 396 GLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTP 455
GLDLQQ +G+T+ AE+LN+ R+IS FR VHRGA FA L+TT+VRKLLPESWGFLCPVHTP
Sbjct: 472 GLDLQQASGFTIVAEKLNWHRYISHFRCVHRGAFFAELKTTTVRKLLPESWGFLCPVHTP 531
Query: 456 DGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSL--------PK 507
DG PCGLLNH+T +CR I+ + V +PSL P
Sbjct: 532 DGSPCGLLNHLTRSCR--------------------IICEPLSVSHLPSLLYSRGLTQPF 571
Query: 508 LVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLS--L 565
A L V LDGR++G + +++ LR K +P DLE+G+VP S
Sbjct: 572 ASSIDGRANLCVQLDGRIIGWARPTLAKQLADDLRVWKTEGQHGVPLDLEIGWVPPSDGA 631
Query: 566 GGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAF 625
GG YPGL+LF+ + +RPV+ ++ + ++IG FEQV+M+I +
Sbjct: 632 GGQYPGLFLFSGRSRMMRPVKFLA-----NGKTDMIGSFEQVYMDIAVKEE----EIEKG 682
Query: 626 PATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHL 685
TH E + +S++AN+TP+SD NQSPRN+YQCQM KQ+MG AL+ R D KLY L
Sbjct: 683 IETHVEFSTSNFMSILANMTPFSDFNQSPRNIYQCQMGKQSMGTPATALRHRTDNKLYRL 742
Query: 686 QTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIY 745
QT QTP+VR + Y +D +P G NA+VAV++YTGYDMEDAMILNKS+ +RG +G +Y
Sbjct: 743 QTGQTPVVRPALHNTYAMDSFPNGMNAVVAVISYTGYDMEDAMILNKSAHERGFGYGTVY 802
Query: 746 QTETIDLSDDGNKVDRGQK------LFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCS 799
+++ +DL+D V + L R + +D DGLP VGQ PG+P +
Sbjct: 803 KSQIVDLTDLHGPVKSTSQTPLFFGLARDVRRDDKRREKVDEDGLPIVGQQYLPGDPIAA 862
Query: 800 IYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLP-QKANIRFRHTRNPIIGDKFSSRH 858
D+T+ + KG E + D V + ++ + QK +I R R P+IGDKFSSRH
Sbjct: 863 YVDETSGRTKFVKYKGDEVAYTDCVRLIGGDAGDTELQKIHIMLRIPRAPVIGDKFSSRH 922
Query: 859 GQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
GQKGVCSQ WP +DMPFS +G++PD+IINPHAFPSRMTI ML+ES+AAK
Sbjct: 923 GQKGVCSQKWPAVDMPFS-ESGIQPDVIINPHAFPSRMTIGMLVESMAAK 971
>gi|326474430|gb|EGD98439.1| DNA-directed RNA polymerase I [Trichophyton tonsurans CBS 112818]
Length = 1244
Score = 689 bits (1777), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 386/907 (42%), Positives = 549/907 (60%), Gaps = 73/907 (8%)
Query: 37 HCRQAKISYTGKLMADVEFQYLDA-GSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVS 95
CR+ +Y GKL A +E++ + VRE GQ P+M+++ RCHL+ A +LV
Sbjct: 127 ECRERHATYRGKLRARLEYRVNNGEWKESVRE---LGQVPIMIRSNRCHLEKATPSQLVD 183
Query: 96 LKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKD 155
KEE+ E+GGYFI+NG E++ R +I+ K+N+P +++R+SF+ R YT V +R VR D
Sbjct: 184 HKEESEELGGYFIVNGNEKLIRMLIVGKRNFPTAIIRNSFQKRGSAYTKFGVQLRSVRPD 243
Query: 156 QSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKK 215
Q+S T L+YL +G+V F + EYL+PV ++LKAL++TND EIF L
Sbjct: 244 QTSQTNVLHYLNDGNVTFRFSWRKNEYLVPVMMILKALIETNDREIFERLV--------G 295
Query: 216 EKGAVG--SPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAET 273
+G++G + V++RV+++L + + +R +C ++G F+ V+ + V
Sbjct: 296 REGSLGIENTFVTDRVELLLRTYKAYGVHSRSKCRAYLGSKFRFVLGMPEDIPEEDVGTE 355
Query: 274 VIRDYIFVHLND-------NNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGH 326
+R + HL + +NDKFN+++FM++KL++LV DNPD++ NQE+LL G+
Sbjct: 356 FLRKIVLPHLGNQNVTETQDNDKFNMILFMIRKLYNLVAGDCAPDNPDAVSNQEVLLGGY 415
Query: 327 LITIYLKEKLEDWLRKGKKLIQD-EIENNGKKFD--FFNLANIKKVMEKNPSKQIGTSIE 383
L + LKE+LE+WL+ +++D + N KF F + +++ + ++ IG ++E
Sbjct: 416 LYGMLLKERLEEWLKSVGPMVRDWRMRNQDAKFTDPKFEREFLTRIIGRT-NENIGGAME 474
Query: 384 TMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLP 443
L TG L + TGLDLQQ +GYTV AE++NF RFIS FR +HRG+ FA L+TT+VRKLLP
Sbjct: 475 YFLSTGNLVSPTGLDLQQPSGYTVMAEKINFYRFISHFRMIHRGSFFAQLKTTTVRKLLP 534
Query: 444 ESWGFLCPVHTPDGEPCGLLNHMTSTCRVA-SYYDSRGNIRDFSKMRTSILRVLIGVGMI 502
ESWGFLCPVHTPDG PCGLLNH+ C ++ S D G I VL G+G+
Sbjct: 535 ESWGFLCPVHTPDGSPCGLLNHLAHKCLISTSNLDVSG-----------IPGVLAGLGVT 583
Query: 503 PSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVP 562
++ P V LDG+++G + + LR KV IP +LE+GYVP
Sbjct: 584 SESSCSIEESIP----VQLDGKILGYCTPKQSRAIADTLRYWKVQGHKQIPVELEIGYVP 639
Query: 563 LSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRR 622
S GG YPG+Y+F+ + RPV+ + L ++ +GPFEQ +MEI C R
Sbjct: 640 CSNGGQYPGVYMFSEAARMYRPVKYLPL-----DKLDYVGPFEQPYMEIACVASDI---R 691
Query: 623 NAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKL 682
N +TH E PT +LS++AN+TP+SD NQSPRNMYQCQM KQ MG A+ +R D KL
Sbjct: 692 NGV-STHIEFDPTHILSILANMTPFSDFNQSPRNMYQCQMGKQAMGTPGTAIDYRTDNKL 750
Query: 683 YHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHG 742
Y LQT QTP+VR Y YG+D +P G NA+VAV++YTGYDM+DAMI+NKSS +RG +G
Sbjct: 751 YRLQTGQTPVVRPPLYNAYGLDNFPNGMNAVVAVISYTGYDMDDAMIINKSSHERGFGYG 810
Query: 743 QIYQTETIDLSDDGNKVDRGQ------KLFRRNKDA---KSLHSVIDSDGLPYVGQMIHP 793
IY+T+ L DD RG+ KLF + +D DGLP++G +
Sbjct: 811 TIYKTKIYAL-DDKESRGRGKSKRAITKLFGFAPGGLVKAEWKAQLDEDGLPHIGAKVSE 869
Query: 794 GE----PYCSIYDKTTNSWRTNSR-------KGSESVFVDYVAVDMKNSKN-LPQKANIR 841
G + YD T+++ + K E F+D V V + N + Q +I+
Sbjct: 870 GSLVGAWHTVQYDPATDTYINVDKQTHFLKYKDGEEGFIDSVRVLGSETGNEVCQAVSIK 929
Query: 842 FRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAML 901
+R R P+IGDKFSSRHGQKGV SQLWP DMPFS +G++PD+IINPHAFPSRMTI M
Sbjct: 930 YRVPRRPVIGDKFSSRHGQKGVLSQLWPATDMPFS-ESGIQPDVIINPHAFPSRMTIGMF 988
Query: 902 LESVAAK 908
+ES+A K
Sbjct: 989 VESLAGK 995
>gi|258574737|ref|XP_002541550.1| DNA-directed RNA polymerase I polypeptide 2 [Uncinocarpus reesii
1704]
gi|237901816|gb|EEP76217.1| DNA-directed RNA polymerase I polypeptide 2 [Uncinocarpus reesii
1704]
Length = 1243
Score = 688 bits (1776), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 388/906 (42%), Positives = 549/906 (60%), Gaps = 73/906 (8%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAG-SPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
CR+ +Y G+L A VE++ + VRE GQ P+ML+T RCHL+ +LV
Sbjct: 127 CRERHATYRGRLRARVEYKVNNGDWKESVRE---LGQVPIMLRTNRCHLEKLSPSQLVER 183
Query: 97 KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQ 156
KEE+ E+GGYFI+NG E++ R +I+ ++N+PM+++R+SF R YT V IR VR DQ
Sbjct: 184 KEESEELGGYFIVNGNEKLIRMLIVSRRNFPMAIIRNSFTKRGATYTKYGVQIRSVRPDQ 243
Query: 157 SSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKE 216
+S T L+YL +G+V F + EYL+PV ++LKAL++TND EIF L
Sbjct: 244 TSQTNVLHYLSDGNVTFRFSWRKNEYLVPVVMILKALIETNDREIFERLV--------GR 295
Query: 217 KGAVG--SPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETV 274
+G++G + V++R++++L + + +R +C ++GE F+ V+ ++ V
Sbjct: 296 EGSLGMKNTFVTDRMELLLRTYKAYGVHSRSKCRAYLGEKFRYVLGMSENVPDEDVGTEF 355
Query: 275 IRDYIFVHLND-------NNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHL 327
+R + HL + +NDKFN+++F+++KL++LV DNPD++ NQE+LL G L
Sbjct: 356 LRKIVLPHLGNQNVTESQDNDKFNMILFIIRKLYTLVAGDCAPDNPDAVSNQEVLLGGFL 415
Query: 328 ITIYLKEKLEDWLRKGKKLIQDEIENN-GKKFD--FFNLANIKKVMEKNPSKQIGTSIET 384
+ LKE+LE+WLR + +D N G F F I +++ + ++ IG ++E
Sbjct: 416 YGMILKERLEEWLRSIGPIARDWSNKNLGLPFTDARFEKDFISRIVART-NENIGGALEY 474
Query: 385 MLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPE 444
L TG L + TGLDLQQ +GYT+ AE++NF RFIS FR +HRG+ FA L+TT+VRKLLPE
Sbjct: 475 FLSTGNLVSPTGLDLQQPSGYTIMAEKINFYRFISHFRMIHRGSFFAQLKTTTVRKLLPE 534
Query: 445 SWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPS 504
SWGFLCPVHTPDG PCGLLNH+ C +A+ S N+ ++ + ++GVG S
Sbjct: 535 SWGFLCPVHTPDGSPCGLLNHLAHKCLIAT---SNLNVAGVPEVLS-----ILGVGSESS 586
Query: 505 LPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLS 564
++V LDGR+VG + + LR KV IP +LEVGYVP S
Sbjct: 587 SSTE------ESVAVSLDGRIVGYCSPKQARVISDTLRHWKVEGHPKIPVELEVGYVPNS 640
Query: 565 LGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRN 623
GG YPG+YLF+ + RPV+ + L ++ +GPFEQ FMEI C P G
Sbjct: 641 NGGQYPGVYLFSQCARMYRPVKYLPL-----DKLDYVGPFEQPFMEIACVPSDIMSG--- 692
Query: 624 AFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLY 683
+TH E PT +LS++AN+TP+SD NQSPRNMYQCQM KQ MG ++ +R D KLY
Sbjct: 693 --ISTHVEFDPTHILSILANMTPFSDFNQSPRNMYQCQMGKQAMGTPGTSIDYRTDNKLY 750
Query: 684 HLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQ 743
LQT QTPI R Y YG+D +P G NA+VAV++YTGYDM+DAMI+NKS+ +RG +G
Sbjct: 751 KLQTGQTPIARPPLYNAYGLDNFPNGMNAVVAVISYTGYDMDDAMIINKSAHERGFGYGT 810
Query: 744 IYQTETIDLSDDGNKVDRG------QKLFRRNKDA---KSLHSVIDSDGLPYVGQMIHPG 794
IY+T+ L DD RG +KLF + + DGLP+VG + G
Sbjct: 811 IYKTKIYPL-DDKEARGRGKSKREIKKLFGFAPGGLVKAEWRNQLGEDGLPHVGGRVKDG 869
Query: 795 EPYCSI----YDKTTNSWRTNSR-------KGSESVFVDYVAVDMKNSKNLP-QKANIRF 842
+ + YD ++ + K +E ++D + + + N P Q +I++
Sbjct: 870 DLVAAWHTVQYDPAAETYLNVDKETHFLKYKDAEEGYIDSIRILGSETGNEPCQAISIKY 929
Query: 843 RHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLL 902
R R PIIGDKFSSRHGQKGVCSQLWP +DMPFS +G++PD+IINPHAFPSRMTI M +
Sbjct: 930 RIPRKPIIGDKFSSRHGQKGVCSQLWPAVDMPFS-ESGIQPDIIINPHAFPSRMTIGMFV 988
Query: 903 ESVAAK 908
ES+A K
Sbjct: 989 ESLAGK 994
>gi|393216038|gb|EJD01529.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Fomitiporia mediterranea MF3/22]
Length = 1230
Score = 688 bits (1776), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/849 (43%), Positives = 537/849 (63%), Gaps = 44/849 (5%)
Query: 72 GQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMV 131
G P+M+++ RC+++ S +LV+ EE E GGYFI+NG ER+ R +I+ ++++ +++
Sbjct: 156 GLVPIMVRSVRCNIRNLSSSELVAKHEEPEEFGGYFIINGNERLIRYLIVSRRHHVIALS 215
Query: 132 RSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLK 191
R SF+ R YT AV IRCVR DQ++VT L+YL NG+ F + +EY++PV ++LK
Sbjct: 216 RPSFQKRGPSYTPYAVQIRCVRPDQTAVTNSLHYLSNGNAMFRFSWRKQEYVIPVMLILK 275
Query: 192 ALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHI 251
ALV +D EIF + + Y+ + +++RV+++L ++ L T QCL+ +
Sbjct: 276 ALVGASDKEIFEGIIM---QDYE-------NTFLTDRVELLLRSFKNYKLYTGEQCLEFL 325
Query: 252 GEHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSD 311
G+ F+ V+ + + A+ ++R +I VHL D DKF +L+FML+KL+S V+ +S SD
Sbjct: 326 GDKFRVVLGQPEDWNNTALGVWLVRKFILVHLEDPRDKFRMLLFMLRKLYSSVNSSSCSD 385
Query: 312 NPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVME 371
NPDS Q+QE+LLPG L + +KE++E+ L + I ++ K DFF+ K +
Sbjct: 386 NPDSPQHQEVLLPGFLYGMIIKERMEECLNALRAQIAHDVRRGDKAVDFFDEKYFMKAVS 445
Query: 372 KNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFA 431
+ + IG + L TG L + TGLDLQQ AG+T+ AE+LN+ R+IS FR +HRGA FA
Sbjct: 446 R-VNFDIGARLANFLATGNLVSPTGLDLQQAAGFTIVAEKLNWYRYISHFRCIHRGAFFA 504
Query: 432 GLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTS 491
L+TT+VRKLLPE+WGFLCPVHTPDG PCGLLNH++ +CR+ + + ++ +
Sbjct: 505 ELKTTTVRKLLPEAWGFLCPVHTPDGSPCGLLNHLSRSCRIVTAPLAVAHLTN------- 557
Query: 492 ILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASV 551
+L+ GM + ++V LDGR++G + ++++ LR K
Sbjct: 558 ---LLLSNGMTSVHAPSINGKRHRNVAVQLDGRMIGWASPALVKQLATSLRVWKTEGRYN 614
Query: 552 IPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEI 611
+P DLE+G VP+S GG YPGLYLF+S + +RPV+ + L ++ Q IG FEQV+M+I
Sbjct: 615 VPLDLEIGLVPISQGGQYPGLYLFSSRSRMMRPVKYV-LNGKDDQ----IGSFEQVYMDI 669
Query: 612 RC-PDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFS 670
P+ + G +TH E PT LS++ANLTP+SD NQSPRN+YQCQM KQTMG
Sbjct: 670 AVKPEEIESG-----VSTHVEHSPTNFLSILANLTPFSDFNQSPRNIYQCQMGKQTMGTP 724
Query: 671 VQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMIL 730
A+K R D KLY LQT QTPIVR + Y +D +P GTNA+VAV++YTGYDMEDAMIL
Sbjct: 725 STAIKHRTDNKLYRLQTGQTPIVRPALHNTYSMDSFPNGTNAVVAVISYTGYDMEDAMIL 784
Query: 731 NKSSVDRGMCHGQIYQTETIDLSDDGNKVDR----------GQKLFRRNKDAKSLHSVID 780
NKS+ +RG +G +Y+++TIDL D G+ + R + ++D
Sbjct: 785 NKSAHERGFAYGTVYKSQTIDLKDMHGASKSTTAPTLHFGFGRDIRTRGNNPHPCLEILD 844
Query: 781 SDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLP-QKAN 839
DGLP+VG+ + + + D TT R K E+ +D V + ++ + QK N
Sbjct: 845 FDGLPHVGKKVKFNDFIAAYVDDTTGRTRFVKYKNDEAGIIDEVRLLGSDAGDTELQKIN 904
Query: 840 IRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIA 899
I FR TR+P+IGDKFSSRHGQKGVCSQ WP IDMPFS +G++PD+IINPHAFPSRMTI
Sbjct: 905 ITFRITRSPVIGDKFSSRHGQKGVCSQKWPMIDMPFS-ESGIQPDVIINPHAFPSRMTIG 963
Query: 900 MLLESVAAK 908
ML+ES+A K
Sbjct: 964 MLVESMAGK 972
>gi|358057691|dbj|GAA96456.1| hypothetical protein E5Q_03123 [Mixia osmundae IAM 14324]
Length = 1236
Score = 688 bits (1775), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/885 (42%), Positives = 535/885 (60%), Gaps = 50/885 (5%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
R+ +Y G++ + + G PV E G P+M+++ RCHL+G LV +
Sbjct: 147 ARERMETYAGEM--SCKLIWAVNGEPVHSELKKLGMLPIMVRSERCHLKGMAPAALVKHR 204
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
EEA E+GGYFI+NG E++ R +I+P++N+ +++ R SF +R + YT V IR VR DQS
Sbjct: 205 EEAEELGGYFIINGNEKIIRFLIVPRRNHVIALNRPSFGNRGKLYTAYGVQIRSVRPDQS 264
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVD--TNDLEIFNHLTCCYDEKYKK 215
+T L+YL NG + L F + EY++P+ ++LKAL+D +D I+ +
Sbjct: 265 GLTSTLHYLKNGCLHLRFSWRKNEYMIPLMMILKALLDDEASDKNIYAGIM--------- 315
Query: 216 EKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVI 275
+ + S+R +++L +D L + QC ++G+ F+ V+ + S V ++
Sbjct: 316 -QNDFANTYYSDRAELLLRTFKDYGLRSGRQCRAYLGKSFRIVLGCPEDWSNERVGRFLL 374
Query: 276 RDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEK 335
+ VHL++ DKF +L+FM++KL++LV +DNPDS Q+QEIL+PG L +KEK
Sbjct: 375 ERIVLVHLDEPADKFRMLLFMVRKLYALVAGDCCADNPDSPQHQEILMPGFLYATIIKEK 434
Query: 336 LEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQT 395
L ++L + ++ F + ++ + K S IGT I T L TG L + +
Sbjct: 435 LSEYLDAIATQFRIDMRRQAVGATFEDTKWVRSIFAK-VSPNIGTKISTFLATGNLVSSS 493
Query: 396 GLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTP 455
GLDLQQ +G+T+ AE+LNFLRFIS FR VHRGA FA L+TT+VRKLLPE+WGFLCPVHTP
Sbjct: 494 GLDLQQASGFTIVAEKLNFLRFISHFRCVHRGAFFAELKTTTVRKLLPEAWGFLCPVHTP 553
Query: 456 DGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIG-VGMIPSLPKLVKSGPP 514
DG PCGLLNH C + S S +T L L+ +GM + + SG
Sbjct: 554 DGSPCGLLNHFAHKCLLVS-----------SAAKTDHLAGLLSSMGMTQPFERRI-SGKT 601
Query: 515 AVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYL 574
V V LDGR++G E++ LRR K +P DLEVG VP S GG YPGL+L
Sbjct: 602 NV-CVQLDGRIIGWATPDTCERIAIALRRFKTEGRHKVPRDLEVGLVPPSSGGQYPGLFL 660
Query: 575 FTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIHP 634
F++ + +RPVR ++ EE IGPFEQV++ I C A +H E
Sbjct: 661 FSTRARMMRPVRLLANGQEEH-----IGPFEQVYLNIAC----TADEIEAGVHSHVEFAA 711
Query: 635 TGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVR 694
T +LSV+ANLTP+SD+NQSPRNMYQCQM KQTMG AL R D KLY +QT QTPIVR
Sbjct: 712 TNVLSVLANLTPFSDYNQSPRNMYQCQMGKQTMGTPSTALTHRTDNKLYRIQTGQTPIVR 771
Query: 695 TNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSD 754
+ YG D YP G NA+VAV++YTGYDMEDAMI+NKS+ +RG HG +Y++ T++L+
Sbjct: 772 PALHDTYGFDGYPNGFNAVVAVISYTGYDMEDAMIINKSAYERGFGHGSVYKSHTLELAS 831
Query: 755 ----DGNKVDRGQKL-FRRNKDAKSLHSV---IDSDGLPYVGQMIHPGEPYCSIYDKTTN 806
+G+ +RGQ L F D + H+ +D G+P+ G ++ G+ Y + Y+ TT
Sbjct: 832 AKGAEGSAPNRGQNLIFGFGADVPASHTARQRLDGRGIPHPGMLVRRGDIYAAYYNTTTK 891
Query: 807 SWRTNSRKGSESVFVDYV---AVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGV 863
+ + E ++D V A ++ +++ K ++ R R P IGDKFSSRHGQKGV
Sbjct: 892 RTHYDKYESDEEAYIDTVRLIAGNIASNEGKLIKLHLMLRIVRRPEIGDKFSSRHGQKGV 951
Query: 864 CSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
CSQ +P ID+PFS +GM+PD+IINPHAFPSRMTI ML+ES+A K
Sbjct: 952 CSQRFPAIDLPFS-ESGMQPDVIINPHAFPSRMTIGMLIESLAGK 995
>gi|302660181|ref|XP_003021772.1| hypothetical protein TRV_04103 [Trichophyton verrucosum HKI 0517]
gi|291185687|gb|EFE41154.1| hypothetical protein TRV_04103 [Trichophyton verrucosum HKI 0517]
Length = 1243
Score = 687 bits (1774), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/907 (42%), Positives = 550/907 (60%), Gaps = 73/907 (8%)
Query: 37 HCRQAKISYTGKLMADVEFQYLDA-GSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVS 95
CR+ +Y G+L A +E++ + VRE GQ P+M+++ RCHL+ A +LV
Sbjct: 126 ECRERHATYRGRLRARLEYRINNGEWKESVRE---LGQVPIMIRSNRCHLEKATPSQLVD 182
Query: 96 LKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKD 155
KEE+ E+GGYFI+NG E++ R +I+ K+N+P +++R+SF+ R YT V +R VR D
Sbjct: 183 HKEESEELGGYFIVNGNEKLIRMLIVGKRNFPTAIIRNSFQKRGSAYTKFGVQLRSVRPD 242
Query: 156 QSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKK 215
Q+S T L+YL +G+V F + EYL+PV ++LKAL++TND EIF L
Sbjct: 243 QTSQTNVLHYLNDGNVTFRFSWRKNEYLVPVVMILKALIETNDREIFERLV--------G 294
Query: 216 EKGAVG--SPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAET 273
+G++G + V++RV+++L + + +R +C ++G F+ V+ + V
Sbjct: 295 REGSLGIENTFVTDRVELLLRTYKAYGVHSRSKCRAYLGSKFRFVLGMPEDIPEEDVGTE 354
Query: 274 VIRDYIFVHLND-------NNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGH 326
++R + HL + +NDKFN+++FM++KL++LV DNPD++ NQE+LL G+
Sbjct: 355 LLRKIVLPHLGNQNVTETQDNDKFNMILFMIRKLYNLVAGDCAPDNPDAVSNQEVLLGGY 414
Query: 327 LITIYLKEKLEDWLRKGKKLIQD-EIENNGKKFD--FFNLANIKKVMEKNPSKQIGTSIE 383
L + LKE+LE+WL+ +++D + N KF F + +++ + ++ IG ++E
Sbjct: 415 LYGMLLKERLEEWLKSVGPMVRDWRMRNQDAKFTDPKFEREFLTRIIGRT-NENIGGAME 473
Query: 384 TMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLP 443
L TG L + TGLDLQQ +GYTV AE++NF RFIS FR +HRG+ FA L+TT+VRKLLP
Sbjct: 474 YFLSTGNLVSPTGLDLQQPSGYTVMAEKINFYRFISHFRMIHRGSFFAQLKTTTVRKLLP 533
Query: 444 ESWGFLCPVHTPDGEPCGLLNHMTSTCRVA-SYYDSRGNIRDFSKMRTSILRVLIGVGMI 502
ESWGFLCPVHTPDG PCGLLNH+ C ++ S D G I VL G+G+
Sbjct: 534 ESWGFLCPVHTPDGSPCGLLNHLAHKCLISTSNLDVSG-----------IPGVLAGLGVT 582
Query: 503 PSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVP 562
++ P V LDG+++G + + LR KV IP +LE+GYVP
Sbjct: 583 SESSCSIEESIP----VQLDGKILGYCTPKQSRAIADTLRYWKVQGHKQIPVELEIGYVP 638
Query: 563 LSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRR 622
S GG YPG+Y+F+ + RPV+ + L ++ +GPFEQ +MEI C R
Sbjct: 639 SSNGGQYPGVYMFSEAARMYRPVKYLPL-----DKLDYVGPFEQPYMEIACVASDI---R 690
Query: 623 NAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKL 682
N +TH E PT +LS++AN+TP+SD NQSPRNMYQCQM KQ MG A+ +R D KL
Sbjct: 691 NGV-STHIEFDPTHILSILANMTPFSDFNQSPRNMYQCQMGKQAMGTPGTAIDYRTDNKL 749
Query: 683 YHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHG 742
Y LQT QTP+VR Y YG+D +P G NA+VAV++YTGYDM+DAMI+NKSS +RG +G
Sbjct: 750 YRLQTGQTPVVRPPLYNAYGLDNFPNGMNAVVAVISYTGYDMDDAMIINKSSHERGFGYG 809
Query: 743 QIYQTETIDLSDDGNKVDRGQ------KLFRRNKDA---KSLHSVIDSDGLPYVGQMIHP 793
IY+T+ L DD RG+ KLF + +D DGLP++G +
Sbjct: 810 TIYKTKIYAL-DDKESRGRGKSKRATTKLFGFAPGGLVKAEWKAQLDEDGLPHIGAKVSE 868
Query: 794 GE----PYCSIYDKTTNSWRTNSR-------KGSESVFVDYVAVDMKNSKN-LPQKANIR 841
G + YD T+++ + K E F+D V V + N + Q +I+
Sbjct: 869 GSLVGAWHTVQYDPATDTYINVDKQTHFLKYKDGEEGFIDSVRVLGSETGNEVCQAVSIK 928
Query: 842 FRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAML 901
+R R P+IGDKFSSRHGQKGV SQLWP DMPFS +G++PD+IINPHAFPSRMTI M
Sbjct: 929 YRVPRRPVIGDKFSSRHGQKGVLSQLWPATDMPFS-ESGIQPDVIINPHAFPSRMTIGMF 987
Query: 902 LESVAAK 908
+ES+A K
Sbjct: 988 VESLAGK 994
>gi|348507169|ref|XP_003441129.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 2
[Oreochromis niloticus]
Length = 1078
Score = 687 bits (1773), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 375/910 (41%), Positives = 545/910 (59%), Gaps = 64/910 (7%)
Query: 5 KSADFEPLRELVRHHIESFDYMLDEGLSEMFDHCRQAKISYTGKLMADVEFQYLDAGSPV 64
K +++L + HIESFD + +GL+ + + ADV + +
Sbjct: 28 KDTQHAAIQDLTKAHIESFDQAVIDGLNRV--------------VQADVSWSINGVPKGI 73
Query: 65 VRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQ 124
+++ + G P+M+K++ C+L G ++LV EEA EMGGYFI+NG+E+V R +I+P++
Sbjct: 74 IKQ--SLGHVPIMVKSKLCNLHGMSPKELVEHHEEAEEMGGYFIVNGIEKVIRMLIMPRR 131
Query: 125 NYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLL 184
NYP++M R +++R +GYT + +RCVR++ +++ + L+YL NG+V L F Q + + L
Sbjct: 132 NYPIAMSRPKWKNRGQGYTQYGISMRCVREEHTAINMNLHYLENGTVMLNFIYQKELFFL 191
Query: 185 PVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTR 244
P+G LKALVD D +I+ L +E + VSE ++I+ E + TTR
Sbjct: 192 PLGFALKALVDFTDFQIYQELI------KGREDNSFYKTCVSEMLRIVTEE----NCTTR 241
Query: 245 LQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLV 304
+ L ++GE F+ ++ + + A ++ + I +HL + +KF LL M +KLF+
Sbjct: 242 SKVLNYLGERFRVKMNLPEWYTNEQCANFLLNECICIHLKSDVEKFYLLCLMTRKLFTFA 301
Query: 305 DHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLA 364
+ +NPDS+ QE+L PG L ++LKE+L WL ++ + G K +
Sbjct: 302 KQECMEENPDSIVCQEVLTPGQLYLMFLKERLTAWLVS----VKLSFDKRGSKVTG-GWS 356
Query: 365 NIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAV 424
+ + N + S E +L TG L ++TGL + Q G V A++LNF+R++S FR V
Sbjct: 357 SEMMIKMLNMGTDLTRSFEYLLATGNLQSKTGLGMLQNTGLCVVADKLNFIRYLSHFRCV 416
Query: 425 HRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRD 484
HRGA+FA +RTTSVRKLLPESWGFLCPVHTPDGEPCGL+NHMT++C + +
Sbjct: 417 HRGAAFAKMRTTSVRKLLPESWGFLCPVHTPDGEPCGLMNHMTASCEIVA---------- 466
Query: 485 FSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLS----VLLDGRVVGVIPSSEIEKVVAH 540
+ TS+ +L +G+ P V P + V+LDG VVG + + VV
Sbjct: 467 LTLSTTSLPGLLCSLGVTP-----VDGTPGRAFADCYPVVLDGAVVGWVEADLAPVVVES 521
Query: 541 LRRLKVSAASVIPDDLEVGYVPLSLGGA-YPGLYLFTSPPKFVRPVRNISLPSEESQNIE 599
LRR KV IP E+ VP + + YPGL+LFT+P + VRPV+N++ +E
Sbjct: 522 LRRFKVLREKKIPPWTEIVLVPKTGKASLYPGLFLFTTPCRMVRPVQNLAFGKQE----- 576
Query: 600 LIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQ 659
LIG FEQ+++ + + R TH+E+ P MLSVVAN PYSDHNQSPRNMYQ
Sbjct: 577 LIGTFEQLYINVGILENEIEPRV----TTHQELFPHSMLSVVANFIPYSDHNQSPRNMYQ 632
Query: 660 CQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAY 719
CQM KQTMGF + + R+D KLY LQTPQ+P+VR Y YG+D YP+GTNAIVAV++Y
Sbjct: 633 CQMGKQTMGFPLHSFMDRSDNKLYRLQTPQSPLVRPYMYDHYGLDNYPSGTNAIVAVISY 692
Query: 720 TGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVI 779
TGYDMEDAMI+NKSS +RG HG IY+TE +DL++ K + G + D K + +
Sbjct: 693 TGYDMEDAMIVNKSSWERGFAHGSIYKTELVDLAEK-VKGEDGVVFGTKPGDPK-VKEKL 750
Query: 780 DSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKN-SKNLPQKA 838
D+DGLP++G ++ G+P+ S + T + K E+ VD + V + ++
Sbjct: 751 DADGLPFIGSVLQYGDPFYSYINLNTGQTFISYYKSQEACIVDNIKVCSNDGGSGRFKRV 810
Query: 839 NIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTI 898
I R RNP IGDKF+SRHGQKG+ S+LWP DMPF+ +GM PD++ NPH FPSRMTI
Sbjct: 811 CITVRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTE-SGMTPDILFNPHGFPSRMTI 869
Query: 899 AMLLESVAAK 908
ML+ES+A K
Sbjct: 870 GMLIESMAGK 879
>gi|116181610|ref|XP_001220654.1| hypothetical protein CHGG_01433 [Chaetomium globosum CBS 148.51]
gi|88185730|gb|EAQ93198.1| hypothetical protein CHGG_01433 [Chaetomium globosum CBS 148.51]
Length = 1188
Score = 687 bits (1773), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 397/948 (41%), Positives = 566/948 (59%), Gaps = 92/948 (9%)
Query: 9 FEPLRELVRHHIESFDYM---------LDEGLSEM-----FDHCRQAKISYTGKLMADVE 54
+ L+ V HIESF+ + LD L+E+ D +A + KL +
Sbjct: 33 YPALQLAVDPHIESFNALFRTDGKPGLLDHALAEIGTKTFLDGDDRAAPANKNKLTIRI- 91
Query: 55 FQYLDAGSP--VVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGL 112
+ G P VRE GQ P+M+K+ +CHL+ LV KEE+ E+GGYFI+NG+
Sbjct: 92 ----NGGEPQEFVRE---LGQMPIMIKSNKCHLENNSPALLVQRKEESEELGGYFIVNGI 144
Query: 113 ERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVR 172
E++ R +++ ++N+P++++R SF +R YT +++R VR D++S T L+YL +G+V
Sbjct: 145 EKIIRLLLVNRRNFPLAIIRPSFTNRGPSYTPYGIIVRSVRPDETSQTNVLHYLNDGNVT 204
Query: 173 LGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKII 232
F + EYL+PV ++LKAL++TND EIF L + K + + +++RV+++
Sbjct: 205 FRFSWRKNEYLVPVMMILKALIETNDREIFEGLVGPPNSK------GIENTFLTDRVELL 258
Query: 233 LAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLN-------D 285
L + L T+ Q ++GE F+ V+ ++ S Y V +R + V+L
Sbjct: 259 LRTYKTYGLYTKTQTRAYLGEKFRVVLGVPETMSDYEVGTEFLRRIVLVNLGCVDVTEEQ 318
Query: 286 NNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKK 345
+ DKF +L+FM +KL++LV DNPD++QNQEILL G L + LKE+L++ L +
Sbjct: 319 DLDKFKMLLFMCRKLYALVAGDCAVDNPDAVQNQEILLGGFLYGMVLKERLDELLSVSLR 378
Query: 346 L-IQDEIENNGKKFDFFNLANIKK----VMEKNPSKQIGTSIETMLKTGRLATQTGLDLQ 400
L ++D + N + F + K + + ++ +G ++E L TG L + +GLDLQ
Sbjct: 379 LALRDYLRRNPSQS--FTSSGFTKDFPIAIFRRTNENLGNALEYFLSTGNLQSPSGLDLQ 436
Query: 401 QRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPC 460
Q +G+TV AE+LNFLRFIS FR VHRG+ FA L+TT+VRKLLPESWGFLCPVHTPDG PC
Sbjct: 437 QTSGFTVVAEKLNFLRFISHFRMVHRGSFFAQLKTTTVRKLLPESWGFLCPVHTPDGSPC 496
Query: 461 GLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVL 520
GLLNHM C++ + DS D S + GV M + + + V+
Sbjct: 497 GLLNHMAHKCKIIT--DSV----DVS--------AVPGVAMELGVNDYSSAATSESVVVM 542
Query: 521 LDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPK 580
LDGR++G + + V +LRR KV IP LE+GYVP S GG+YPG+Y+ + +
Sbjct: 543 LDGRIIGWCTPNAAKAVADNLRRWKVEGGHGIPILLEIGYVPPSKGGSYPGIYMSSQSSR 602
Query: 581 FVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDG----GDGGRRNAFPATHEEIHPTG 636
VRPV+ + L E+ +GP EQ +M I C DG GD +TH E PT
Sbjct: 603 MVRPVKYLPLGKED-----FVGPHEQPYMSIACTDGEVLPGD--------STHVEFDPTH 649
Query: 637 MLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTN 696
+LS++AN+TP+SD NQSPRNMYQCQM KQTMG AL+ R D K+Y LQT QTPIVR
Sbjct: 650 ILSILANMTPFSDFNQSPRNMYQCQMGKQTMGTPGTALRHRTDNKMYRLQTGQTPIVRAP 709
Query: 697 TYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDG 756
+ YG D +P G NA+VAV++YTGYDM+DAMI+NKS+ +RG HG IY+T+ + L DD
Sbjct: 710 LHNTYGFDNFPNGMNAVVAVISYTGYDMDDAMIINKSAHERGFGHGTIYKTKKVSLKDDS 769
Query: 757 NKVDRG--QKLFRRNKDA---KSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTN-SWRT 810
K+F + S ++D DGLPYVG+++ G+ C+ + + + S +
Sbjct: 770 RTRTSKTISKMFGFAPGSPVRASDREMLDEDGLPYVGRLVREGDILCAWHTVSADYSGQL 829
Query: 811 NSRKG---------SESVFVDYVAVDMKNSKNLP-QKANIRFRHTRNPIIGDKFSSRHGQ 860
+R G +E F++ V V +S P Q +I+ R R+PIIGDKFSSRHGQ
Sbjct: 830 INRDGITHWERYKEAEDAFIEEVRVIGSDSGTEPLQTVSIKLRIPRSPIIGDKFSSRHGQ 889
Query: 861 KGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
KGV SQ WP IDMPFS TG++PD+IINPHAFPSRMTI M +ES+A K
Sbjct: 890 KGVASQKWPAIDMPFS-ETGIQPDVIINPHAFPSRMTIGMFVESLAGK 936
>gi|402086731|gb|EJT81629.1| DNA-directed RNA polymerase I subunit RPA2 [Gaeumannomyces graminis
var. tritici R3-111a-1]
Length = 1240
Score = 687 bits (1773), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 384/900 (42%), Positives = 551/900 (61%), Gaps = 64/900 (7%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAG-SPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
CR+ +Y GKL A EFQ D VRE GQ P+M+K+ RCHL+ +LV
Sbjct: 118 CRERHATYRGKLSATFEFQINDEEPQEFVRE---IGQMPIMVKSNRCHLEENSPAQLVER 174
Query: 97 KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQ 156
KEE+ E+GGYFI+NG E++ R ++L ++N+P+++ R SF++R YT +++RCVR D+
Sbjct: 175 KEESEELGGYFIVNGNEKIIRLLLLNRRNFPLAINRPSFQNRGPSYTPYGIIMRCVRPDE 234
Query: 157 SSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKE 216
+S T L+YL +G+V F + EYL+PV ++LKALV+TND EIF L K
Sbjct: 235 TSQTNVLHYLNDGNVTFRFSWRKNEYLVPVMMILKALVETNDREIFEGLCGPPGSK---- 290
Query: 217 KGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIR 276
V + +++RV+++L + L ++ + ++GE F+ V+ ++ S+Y V +R
Sbjct: 291 --GVENSFLTDRVELLLRTYKAYGLYSKSKTRAYLGEKFRVVLGVPETMSHYEVGTEFLR 348
Query: 277 DYIFVHLND-------NNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
+ VH+ ++DKF +L+ M++KL++LV DNPD++QNQEILL G L
Sbjct: 349 KIVLVHIGSVAVTEQQDSDKFRMLLVMMRKLYALVAGECAVDNPDAIQNQEILLGGFLYG 408
Query: 330 IYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKV---MEKNPSKQIGTSIETML 386
+ L+E+LE+ L +L+ + F + A K+ + + ++ IG S+E L
Sbjct: 409 MILRERLEELLNTHLRLVLRDFHRRSPANTFTSAAFAKEFPANIFRRTNENIGNSLEYFL 468
Query: 387 KTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESW 446
TG L + +GLDLQQ +G+ V AE+LNFLRFIS FR VHRG+ FA L+TT+VRKLLPESW
Sbjct: 469 STGNLLSPSGLDLQQTSGFVVVAEKLNFLRFISHFRMVHRGSFFAQLKTTTVRKLLPESW 528
Query: 447 GFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLP 506
GFLCPVHTPDG PCGLLNH+ TC++ + DS D S +I R+ +G++ +
Sbjct: 529 GFLCPVHTPDGSPCGLLNHLAHTCKIMT--DSV----DVS----AIPRLAAELGVVNTSS 578
Query: 507 KLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLG 566
+ + V+LDG+++G + ++ LR KV + +P +LE+G VP S G
Sbjct: 579 AATEES----VVVMLDGKILGWCSPGQSRRIADTLRYWKVEKSHGVPVELEIGLVPPSNG 634
Query: 567 GAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC--PDGGDGGRRNA 624
G YPG+Y+ + + VRPV+ + L E+ +G EQ +M I C P+ G
Sbjct: 635 GTYPGIYMASQASRMVRPVKYLPLEKED-----FVGTQEQPYMSIACTEPEIVSG----- 684
Query: 625 FPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYH 684
+TH E PT MLS++AN+TP+SD NQSPRNMYQCQM KQTMG AL+ R D K+Y
Sbjct: 685 -ESTHVEFDPTNMLSILANMTPFSDFNQSPRNMYQCQMGKQTMGTPGAALRHRTDNKMYR 743
Query: 685 LQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQI 744
LQT QTPIVR + +YG D +P GTNA+VAV++YTGYDM+DAMI+NKS+ +RG HG I
Sbjct: 744 LQTGQTPIVRAPLHNEYGFDNFPNGTNAVVAVISYTGYDMDDAMIINKSAHERGFGHGTI 803
Query: 745 YQTETIDLSDDG--NKVDRGQKLFRRNKDAKS---LHSVIDSDGLPYVGQMIHPGEPYCS 799
Y+T+ I L DD KLF ++D DGLP++G+ + G+ +
Sbjct: 804 YKTKKITLKDDSRTRSAKNVTKLFGFAPSGAVKGWQREMLDEDGLPWIGREVKEGDVIAA 863
Query: 800 IYDKTTN-SWRTNSRKG---------SESVFVDYV-AVDMKNSKNLPQKANIRFRHTRNP 848
+ + + S + +R G SE+ +++ V + +N Q +I+FR R+P
Sbjct: 864 WHTVSADYSDQLMNRDGITHFEKYKDSETAYIEEVRLIGNENGVEPLQTVSIKFRIPRSP 923
Query: 849 IIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
IIGDKFSSRHGQKGV SQ WP IDMPFS +GM+PD+IINPHAFPSRMTI M +ES+A K
Sbjct: 924 IIGDKFSSRHGQKGVASQKWPMIDMPFS-ESGMQPDVIINPHAFPSRMTIGMFVESLAGK 982
>gi|302503725|ref|XP_003013822.1| hypothetical protein ARB_07934 [Arthroderma benhamiae CBS 112371]
gi|291177388|gb|EFE33182.1| hypothetical protein ARB_07934 [Arthroderma benhamiae CBS 112371]
Length = 1243
Score = 686 bits (1771), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/906 (42%), Positives = 549/906 (60%), Gaps = 73/906 (8%)
Query: 38 CRQAKISYTGKLMADVEFQYLDA-GSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
CR+ +Y G+L A +E++ + VRE GQ P+M+++ RCHL+ A +LV
Sbjct: 127 CRERHATYRGRLRARLEYRINNGEWKESVRE---LGQVPIMIRSNRCHLEKATPSQLVDH 183
Query: 97 KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQ 156
KEE+ E+GGYFI+NG E++ R +I+ K+N+P +++R+SF+ R YT V +R VR DQ
Sbjct: 184 KEESEELGGYFIVNGNEKLIRMLIVGKRNFPTAIIRNSFQKRGSAYTKFGVQLRSVRPDQ 243
Query: 157 SSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKE 216
+S T L+YL +G+V F + EYL+PV ++LKAL++TND EIF L
Sbjct: 244 TSQTNVLHYLNDGNVTFRFSWRKNEYLVPVVMILKALIETNDREIFERLV--------GR 295
Query: 217 KGAVG--SPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETV 274
+G++G + V++RV+++L + + +R +C ++G F+ V+ + V
Sbjct: 296 EGSLGIENTFVTDRVELLLRTYKAYGVHSRSKCRAYLGSKFRFVLGMPEDIPEEDVGTEF 355
Query: 275 IRDYIFVHLND-------NNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHL 327
+R + HL + +NDKFN+++FM++KL++LV DNPD++ NQE+LL G+L
Sbjct: 356 LRKIVLPHLGNQNVTETQDNDKFNMILFMIRKLYNLVAGDCAPDNPDAVSNQEVLLGGYL 415
Query: 328 ITIYLKEKLEDWLRKGKKLIQD-EIENNGKKFD--FFNLANIKKVMEKNPSKQIGTSIET 384
+ LKE+LE+WL+ +++D + N KF F + +++ + ++ IG ++E
Sbjct: 416 YGMLLKERLEEWLKSVGPMVRDWRMRNQDAKFTDPKFEREFLTRIIGRT-NENIGGAMEY 474
Query: 385 MLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPE 444
L TG L + TGLDLQQ +GYTV AE++NF RFIS FR +HRG+ FA L+TT+VRKLLPE
Sbjct: 475 FLSTGNLVSPTGLDLQQPSGYTVMAEKINFYRFISHFRMIHRGSFFAQLKTTTVRKLLPE 534
Query: 445 SWGFLCPVHTPDGEPCGLLNHMTSTCRVA-SYYDSRGNIRDFSKMRTSILRVLIGVGMIP 503
SWGFLCPVHTPDG PCGLLNH+ C ++ S D G I VL G+G+
Sbjct: 535 SWGFLCPVHTPDGSPCGLLNHLAHKCLISTSNLDVSG-----------IPGVLAGLGVTS 583
Query: 504 SLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPL 563
++ P V LDG+++G + + LR KV IP +LE+GYVP
Sbjct: 584 ESSCSIEESIP----VQLDGKILGYCTPKQSRAIADTLRYWKVQGHKQIPVELEIGYVPS 639
Query: 564 SLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRN 623
S GG YPG+Y+F+ + RPV+ + L ++ +GPFEQ +MEI C RN
Sbjct: 640 SNGGQYPGVYMFSEAARMYRPVKYLPL-----DKLDYVGPFEQPYMEIACVASDI---RN 691
Query: 624 AFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLY 683
+TH E PT +LS++AN+TP+SD NQSPRNMYQCQM KQ MG A+ +R D KLY
Sbjct: 692 GV-STHIEFDPTHILSILANMTPFSDFNQSPRNMYQCQMGKQAMGTPGTAIDYRTDNKLY 750
Query: 684 HLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQ 743
LQT QTP+VR Y YG+D +P G NA+VAV++YTGYDM+DAMI+NKSS +RG +G
Sbjct: 751 RLQTGQTPVVRPPLYNAYGLDNFPNGMNAVVAVISYTGYDMDDAMIINKSSHERGFGYGT 810
Query: 744 IYQTETIDLSDDGNKVDRGQ------KLFRRNKDA---KSLHSVIDSDGLPYVGQMIHPG 794
IY+T+ L DD RG+ KLF + +D DGLP++G + G
Sbjct: 811 IYKTKIYAL-DDKESRGRGKSKRAITKLFGFAPGGLVKAEWKAQLDEDGLPHIGAKVSEG 869
Query: 795 E----PYCSIYDKTTNSWRTNSR-------KGSESVFVDYVAVDMKNSKN-LPQKANIRF 842
+ YD T+++ + K E F+D V V + N + Q +I++
Sbjct: 870 SLVGAWHTVQYDPATDTYINVDKQTHFLKYKDGEEGFIDSVRVLGSETGNEVCQAISIKY 929
Query: 843 RHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLL 902
R R P+IGDKFSSRHGQKGV SQLWP DMPFS +G++PD+IINPHAFPSRMTI M +
Sbjct: 930 RVPRRPVIGDKFSSRHGQKGVLSQLWPATDMPFS-ESGIQPDVIINPHAFPSRMTIGMFV 988
Query: 903 ESVAAK 908
ES+A K
Sbjct: 989 ESLAGK 994
>gi|395853612|ref|XP_003799298.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 [Otolemur
garnettii]
Length = 1078
Score = 686 bits (1770), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/903 (42%), Positives = 532/903 (58%), Gaps = 63/903 (6%)
Query: 12 LRELVRHHIESFDYMLDEGLSEMFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNF 71
L+EL R H+ESF+Y + EGLS H QA IS+ ++ ++++ +F
Sbjct: 35 LQELTRAHVESFNYAVREGLS----HAVQADISWAVNGIS----------KGIIKQ--SF 78
Query: 72 GQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMV 131
G P+M+K++ C+L G Q L+ EEA EMGGYFI+NG+E+V R +I+P++N+P++M+
Sbjct: 79 GYVPIMVKSKLCNLDGLPPQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMI 138
Query: 132 RSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLK 191
R ++ R GYT + + CVR++ S+V + L+YL NG+V L F + + + LP+G LK
Sbjct: 139 RPKWKSRGPGYTQYGISMHCVREEHSAVNMNLHYLENGTVTLNFIYRKELFFLPLGFALK 198
Query: 192 ALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHI 251
ALV +D +IF L KE + VS+ ++I+ E +T+ Q L ++
Sbjct: 199 ALVSFSDYQIFQELI------KGKEDDSFFRNSVSQMLRIVTEE----GCSTQKQVLNYL 248
Query: 252 GEHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSD 311
GE F+ ++ AE ++ I +HL N +KF +L M +KLF+L + D
Sbjct: 249 GECFRVKLNLPDWYPNEQAAEFLVNQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMED 308
Query: 312 NPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVME 371
NPDSL NQE+L PG L ++LKEK+E WL K + + + NL I +
Sbjct: 309 NPDSLVNQEVLTPGQLFLMFLKEKMEAWLVSIKIAFDKKAQKTNVSMNTDNLMKIFTL-- 366
Query: 372 KNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFA 431
+ E + TG L ++TGL Q +G V A++LNF+R++S FR VHRGA FA
Sbjct: 367 ---GSDLTRPFEYLFATGNLRSKTGLGFLQDSGLCVVADKLNFIRYLSHFRCVHRGADFA 423
Query: 432 GLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTS 491
+RTT+VR+LLPESWGFLCPVHTPDGEPCGL+NH+T+ C V + + TS
Sbjct: 424 KMRTTTVRRLLPESWGFLCPVHTPDGEPCGLMNHLTAVCEVVTQF----------VYTTS 473
Query: 492 ILRVLIGVGMIPSLPKLVKSGPPAVLS----VLLDGRVVGVIPSSEIEKVVAHLRRLKVS 547
I +L +G+ P V P S VLLDG +VG + + LR KV
Sbjct: 474 IPVLLCSLGVTP-----VDGAPHRPYSECYPVLLDGVMVGWVDKDLAPGIAHSLRHFKVL 528
Query: 548 AASVIPDDLEVGYVPLSLGGA-YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQ 606
IP +EV +P++ + YPGLYLFT+P + VRPV+N+ L EE LIG EQ
Sbjct: 529 REKRIPPWMEVALIPMTGKASLYPGLYLFTTPCRLVRPVQNLELGKEE-----LIGTMEQ 583
Query: 607 VFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQT 666
+FM I + A TH+E+ P +LSV+AN P+SDHNQSPRNMYQCQM KQT
Sbjct: 584 IFMNIAIFED----EVIAGVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQT 639
Query: 667 MGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMED 726
MGF + + R+D KLY LQTPQ+P+VR Y Y +D YP GTNAIVAV++YTGYDMED
Sbjct: 640 MGFPLLTYQDRSDNKLYRLQTPQSPLVRPCMYDYYDMDNYPIGTNAIVAVISYTGYDMED 699
Query: 727 AMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPY 786
AMI+NK+S +RG HG +Y++E IDLS+ + D + D + L +D DGLP+
Sbjct: 700 AMIVNKASWERGFAHGSVYKSEFIDLSEKIKQGDDSLVFGVKPGDPRILQK-LDDDGLPF 758
Query: 787 VGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHT 845
+G + G+PY + T K E+ VD + V ++ + K I R
Sbjct: 759 IGAKLQYGDPYYGYLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGRFKCICITMRVP 818
Query: 846 RNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESV 905
RNP IGDKF+SRHGQKG+ S+LWP DMPF+ +GM PD++ NPH FPSRMTI ML+ES+
Sbjct: 819 RNPTIGDKFASRHGQKGILSRLWPTEDMPFTE-SGMVPDILFNPHGFPSRMTIGMLIESM 877
Query: 906 AAK 908
A K
Sbjct: 878 AGK 880
>gi|334312104|ref|XP_003339712.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2-like isoform
2 [Monodelphis domestica]
Length = 1079
Score = 686 bits (1770), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/913 (41%), Positives = 534/913 (58%), Gaps = 69/913 (7%)
Query: 5 KSADFEPLRELVRHHIESFDYMLDEGLSEMFDHCRQAKISYTGKLMADVEFQYLDAGSPV 64
K L+EL R HIESF+Y + EGLS H QA IS++ G+P
Sbjct: 28 KEQQLPALQELTRAHIESFNYAMREGLS----HAVQADISWSVN------------GNPK 71
Query: 65 VRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQ 124
+ + G P+M+K+R C+L + L+ EEA EMGGYFI+NG+E++ R +I+P++
Sbjct: 72 GIIKQSLGYIPIMVKSRLCNLYNLPPKSLIEHHEEAEEMGGYFIINGIEKIIRMLIMPRR 131
Query: 125 NYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLL 184
N+P++M+R ++ R GYT + + CVR + +++ + L+YL NGSV + F + + L
Sbjct: 132 NFPIAMIRPKWKTRGPGYTHYGISMHCVRDEHTAINMNLHYLENGSVMVNFIYHKELFFL 191
Query: 185 PVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTR 244
P+G VLKALV +D +IF L +E+ + VS+ +++++ E T+
Sbjct: 192 PLGFVLKALVAFSDYQIFQELI------KGREENSFFRNCVSQMLRVVMEE----GCITQ 241
Query: 245 LQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLV 304
Q L ++GE F+ + + AE ++ + +HL N +KF +L M +KLF+
Sbjct: 242 KQVLNYLGERFRVKLSLPDWYTNVQAAEFLLNQCVCIHLKSNEEKFYVLCLMTRKLFTFA 301
Query: 305 DHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLA 364
+ +NPDSL NQE+L PG LI ++LKEK+E WL K + + + NL
Sbjct: 302 KEECMEENPDSLMNQEVLTPGRLILMFLKEKMEAWLVSVKIALDKRAQKTNVSMNTENLM 361
Query: 365 NIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAV 424
I + + E L TG L ++TGL + Q +G V A++LNF+R++S FR V
Sbjct: 362 KIFSM-----GLDLTRPFEYFLATGNLRSKTGLGMLQDSGLCVVADKLNFIRYLSHFRCV 416
Query: 425 HRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRD 484
HRGA+FA +RTT+VRKLLPESWGFLCPVHTPDGEPCGL+NHMT+ C V +
Sbjct: 417 HRGAAFAKMRTTTVRKLLPESWGFLCPVHTPDGEPCGLMNHMTAICEVVTQ--------- 467
Query: 485 FSKMRTSILRVLIGVGMIPSLPKLVKSGPPA-----VLSVLLDGRVVGVIPSSEIEKVVA 539
+ +SI +L +G+ P G P+ V+L+G +VG + +
Sbjct: 468 -AVYTSSIAPLLCSLGVTPF------DGTPSQPYSECYPVMLNGIMVGWVEKDLAPAITD 520
Query: 540 HLRRLKVSAASVIPDDLEVGYVPLSLGGA-YPGLYLFTSPPKFVRPVRNISLPSEESQNI 598
LR KV IP E+ +P + + YPGL+LFT+P + +RPV+N+ L EE
Sbjct: 521 SLRNFKVLGKKQIPPWTEIVLIPKTGKPSLYPGLFLFTTPCRMIRPVQNLELGKEE---- 576
Query: 599 ELIGPFEQVFMEIRCPDGGDGGRRNAFPA--THEEIHPTGMLSVVANLTPYSDHNQSPRN 656
LIG EQ+FM I + P TH+E+ P +LSVVAN P+SDHNQSPRN
Sbjct: 577 -LIGTLEQIFMNIAIFE------NEIVPGITTHQELFPHSLLSVVANFIPFSDHNQSPRN 629
Query: 657 MYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAV 716
MYQCQM KQTMGF + + R+D KLY LQTPQ+P+VR Y Y +D YP GTNAIVAV
Sbjct: 630 MYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPYMYDYYDMDNYPIGTNAIVAV 689
Query: 717 LAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLH 776
++YTGYDMEDAMI+NK+S +RG HG +Y+TE IDLS+ + D + D + L
Sbjct: 690 ISYTGYDMEDAMIVNKASWERGFAHGSVYKTELIDLSEKIKQGDDSLVFGVKPGDLRVLQ 749
Query: 777 SVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQ 836
+DSDGLP++G ++ G+P+ S + T K E+ VD + V +S N
Sbjct: 750 K-LDSDGLPHIGSLLKYGDPFYSYLNINTGESFVTYYKNKENCLVDNIKVCSNDSGNGKF 808
Query: 837 KA-NIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSR 895
K+ I R RNP IGDKF+SRHGQKG+ S+LWP DMPF+ +GM PD++ NPH FPSR
Sbjct: 809 KSICITMRIPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTE-SGMVPDILFNPHGFPSR 867
Query: 896 MTIAMLLESVAAK 908
MTI ML+ES+A K
Sbjct: 868 MTIGMLIESMAGK 880
>gi|350581974|ref|XP_003124849.3| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 1
[Sus scrofa]
Length = 1135
Score = 685 bits (1768), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 390/945 (41%), Positives = 537/945 (56%), Gaps = 91/945 (9%)
Query: 12 LRELVRHHIESFDYMLDEGLSEMFD----------------------------------- 36
L+EL R H+ESF+Y + EGLS
Sbjct: 35 LQELTRAHVESFNYAVREGLSHAVQAIPPFEFTFKDERISLTIVDAAISPPTVPKGSICK 94
Query: 37 -------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGAD 89
CR + +Y G+L AD+ + V+++ G P+M+K++ C+L
Sbjct: 95 ELNIYPAECRGRRSTYRGRLTADISWAVNGISKGVIKQFL--GYVPIMVKSKLCNLYSLS 152
Query: 90 SQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVI 149
+ L+ EEA EMGGYFI+NG+E+V R +I+P++N+P++MVR ++ R GYT V +
Sbjct: 153 PRALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMVRPKWKSRGPGYTQYGVSM 212
Query: 150 RCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY 209
CVR++ S+V + L+YL NG+V L F + + + LP+G LKALV +D +IF L
Sbjct: 213 HCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELI--- 269
Query: 210 DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYA 269
KE + VS+ ++I++ E T+ Q L ++GE F+ ++
Sbjct: 270 ---KGKEDDSFLRNSVSQMLRIVMEE----GCATQKQVLNYLGERFRVKVNLPDWYPNEQ 322
Query: 270 VAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
AE + + I +HL N +KF +L M +KLF+L + +NPDSL NQE+L PG L
Sbjct: 323 AAEFLFNECICIHLKSNTEKFYMLCLMTRKLFALAKGECMEENPDSLVNQEVLTPGQLFL 382
Query: 330 IYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTG 389
++LKEKLE WL K I + + N N+ K++ N + E +L TG
Sbjct: 383 MFLKEKLEAWLVSIKIAIDKKAQKTSVSL---NTENLMKIL--NLGIDLTKPFEYLLATG 437
Query: 390 RLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFL 449
L ++TGL Q +G V A++LNF+R++S FR VHRGA FA +RTT+VR+LLPESWGFL
Sbjct: 438 NLRSKTGLGFLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVRRLLPESWGFL 497
Query: 450 CPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLV 509
CPVHTPDGEPCGL+NH+T+TC V + + SI +L +G+ P V
Sbjct: 498 CPVHTPDGEPCGLMNHLTATCEVVTQF----------VYTASIPALLCSLGVTP-----V 542
Query: 510 KSGPPAVLS----VLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSL 565
S P S VLLDG +VG + LR KV IP +EV +P++
Sbjct: 543 DSAPHRRYSECYPVLLDGVMVGWADKELAPSIADSLRHFKVLREKRIPPWMEVVLIPMTG 602
Query: 566 GGA-YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNA 624
+ YPGLYLFT+P + VRPV+N+ L EE LIG EQ+FM + + A
Sbjct: 603 KPSLYPGLYLFTTPCRLVRPVQNLGLGREE-----LIGTMEQIFMNVAIFED----EVLA 653
Query: 625 FPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYH 684
TH+E+ P +LSV+AN P+SDHNQSPRNMYQCQM KQTMGF + K R+D KLY
Sbjct: 654 GVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTFKDRSDNKLYR 713
Query: 685 LQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQI 744
LQTPQ+P+VR Y Y +D YP GTNAIVAV++YTGYDMEDAMILNK+S +RG HG +
Sbjct: 714 LQTPQSPLVRPYMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMILNKASWERGFAHGSV 773
Query: 745 YQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKT 804
Y++E IDLS+ + D R D + +D DGLP+VG + G+PY S +
Sbjct: 774 YKSEFIDLSEKIKQGDDSLVFGVRPGDPRVAQK-LDDDGLPFVGAQLQYGDPYYSYLNLN 832
Query: 805 TNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHTRNPIIGDKFSSRHGQKGV 863
T K E+ VD + V ++ + K I R RNP IGDKF+SRHGQKG+
Sbjct: 833 TGESFVVYYKSKENCIVDNIKVCGNDTGSGRFKCVCITMRVPRNPTIGDKFASRHGQKGI 892
Query: 864 CSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
S+LWP DMPF+ +GM PD++ NPH FPSRMTI ML+ES+A K
Sbjct: 893 LSRLWPVEDMPFTE-SGMVPDILFNPHGFPSRMTIGMLIESMAGK 936
>gi|428164204|gb|EKX33238.1| hypothetical protein GUITHDRAFT_158927 [Guillardia theta CCMP2712]
Length = 1090
Score = 685 bits (1767), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 377/883 (42%), Positives = 539/883 (61%), Gaps = 50/883 (5%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR+ +++Y L A + + L+ P+ +R G+ P+M +++RCHLQG ++L+
Sbjct: 82 CRELRLTYKAPLYATIAVR-LEGAEPIEIDR-KLGELPIMTRSQRCHLQGMSQKQLMQHG 139
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
EE E GGYFI NG E+V R + L ++NYPM+++R SF R YT ++RCVR+DQS
Sbjct: 140 EEPFEFGGYFIANGNEKVIRLLSLMRRNYPMALIRPSFTKRGSSYTKFGCMMRCVREDQS 199
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
TL L+YL G+ L ++ +EYL+P ++LKA+ ++D +IF ++ +
Sbjct: 200 GSTLTLHYLSTGNCTLSVKIRKQEYLIPAVMILKAMTGSSDEQIFTNVV----------Q 249
Query: 218 GAVGSPLVSERVKIILAE-VQDLSLTTRLQCLQHIGEHFQPV-IDGL---QSESYYAVAE 272
G + VS+R+++ L + + + L T+ L ++G+ F+ V I L S + +
Sbjct: 250 GDATNTFVSDRIEVALRDSTKYIGLRTKEDFLGYLGQRFRVVLIRSLYLPDDVSDVEIGQ 309
Query: 273 TVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYL 332
++ +Y F+HL+ + DK+N L+ M+QKL++LV D+PDSL QE+LLPGHL+T+ +
Sbjct: 310 KLLDNYFFIHLDSDEDKWNCLVVMMQKLYALVSGAIQPDSPDSLHCQEVLLPGHLMTMMV 369
Query: 333 KEKLEDWLRKGKKLIQDEIENNGKKFDFF----NLAN---IKKVMEKNPSKQIGTSIETM 385
KEKL+D+L IQD + + F NLA+ I+ ++ +NP IG IE
Sbjct: 370 KEKLQDYLAG----IQDVFLKDQRPGSSFASQVNLADQSYIESLLMRNPV-DIGRKIEYF 424
Query: 386 LKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPES 445
+ TG L +QTGLDL Q +GYT+ AERLNFLR++S FR++HRG F +++T+VRKLLPES
Sbjct: 425 MSTGNLVSQTGLDLSQVSGYTIVAERLNFLRYLSHFRSIHRGQFFTTMKSTAVRKLLPES 484
Query: 446 WGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSL 505
WGF+CPVHTPDG PCGLLNH+TS C + S++ ++ ++ + G +P
Sbjct: 485 WGFVCPVHTPDGGPCGLLNHLTSVCTLHSHFVPPAALKAVEDAVLTLGASPVSAGGLP-- 542
Query: 506 PKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSL 565
V G A L ++LDGR++G + + E ++V +R LK IP+ LE+ +VP
Sbjct: 543 ---VVMGREA-LPIMLDGRMIGRVGAQEAVQLVGRMRLLKAEGLRGIPEFLEIAHVPPRT 598
Query: 566 GGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAF 625
G +PG++LFT+P + +RPVR +S S E IG FEQ+ MEI R++
Sbjct: 599 NGLWPGVFLFTTPARMMRPVRQLS-----SGQHEWIGTFEQIHMEIAVMGKEVRPRQH-- 651
Query: 626 PATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHL 685
TH E+ P MLSVVA TP+SD NQSPRNMYQCQM KQTMG + A R D K+Y +
Sbjct: 652 --THMELSPMNMLSVVAQCTPFSDMNQSPRNMYQCQMGKQTMGTPMYAYNERVDNKVYRI 709
Query: 686 QTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIY 745
TPQ P+VR +D+YPTGTNA+VAV++YTG+DMEDAMI+NK + DRG +G +Y
Sbjct: 710 LTPQVPLVRNQAQDNLRMDDYPTGTNAVVAVISYTGFDMEDAMIINKGAYDRGFGNGHVY 769
Query: 746 QTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTT 805
T +DL+ R F KD S +D DGLP VG ++ G+ D T
Sbjct: 770 TTTIVDLTKSAPPGSR----FDNPKD-DSYVDHLDGDGLPQVGSILQQGQELYRSVDPAT 824
Query: 806 NSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCS 865
+ K +E+V VD V + QK +I+ R+ R P+IGDKFSSRHGQKGV S
Sbjct: 825 GRSKCVMHKSAEAVQVDAVRLLGDGPTKPLQKISIKLRYDRRPVIGDKFSSRHGQKGVLS 884
Query: 866 QLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
LWP +MPFS TGM PD+IINP+AFPSRMTI ML+ES+A K
Sbjct: 885 TLWPQENMPFSE-TGMTPDVIINPNAFPSRMTIGMLVESMAGK 926
>gi|119193490|ref|XP_001247351.1| DNA-directed RNA polymerase I [Coccidioides immitis RS]
gi|392863403|gb|EAS35848.2| DNA-directed RNA polymerase I [Coccidioides immitis RS]
Length = 1243
Score = 685 bits (1767), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/911 (42%), Positives = 541/911 (59%), Gaps = 83/911 (9%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAG-SPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
CR+ +Y G+L A +EF+ + VRE GQ P+ML+T RCHL+ +LV
Sbjct: 127 CRERHATYRGRLRARLEFRVNNGDWKESVRE---LGQVPIMLRTNRCHLEKLTPYQLVER 183
Query: 97 KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQ 156
KEE+ E+GGYFI+NG E++ R +I+ ++N+PM+++R+SF R YT V IR VR DQ
Sbjct: 184 KEESEELGGYFIVNGNEKLIRMLIVSRRNFPMAIIRTSFTKRGASYTKFGVQIRSVRPDQ 243
Query: 157 SSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKE 216
+S T L+YL +G+V F + EYL+PV ++LKAL++TND EIF E+
Sbjct: 244 TSQTNVLHYLSDGNVTFRFSWRKNEYLVPVVMILKALIETNDREIF--------ERLVGR 295
Query: 217 KGAVG--SPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETV 274
+G++G + V++R++++L + + ++ +C ++GE F+ V+ + S V
Sbjct: 296 EGSLGINNTFVTDRMELLLRTYKAYGVHSKSKCRAYLGEKFRYVLGMADNVSDEDVGTEF 355
Query: 275 IRDYIFVHLND-------NNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHL 327
+R + HL + +NDKFN+++FM++KL++LV DNPD++ NQE+LL G L
Sbjct: 356 LRKIVLPHLGNQNVTEPQDNDKFNMILFMIRKLYTLVAGDCAPDNPDAVSNQEVLLGGFL 415
Query: 328 ITIYLKEKLEDWLRKGKKLIQDEIENN------GKKFDFFNLANIKKVMEKNPSKQIGTS 381
+ LKE+LE+WLR L +D N KF+ L I +N +G +
Sbjct: 416 YGMILKERLEEWLRSIGPLARDWSNRNLGALFTDPKFEKDFLGRIVARTNEN----LGGA 471
Query: 382 IETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKL 441
+E L TG L + TGLDLQQ +GYT+ AE++NF RFIS FR +HRG+ FA L+TT+VRKL
Sbjct: 472 LEYFLSTGNLVSPTGLDLQQPSGYTIIAEKINFYRFISHFRMIHRGSFFAQLKTTTVRKL 531
Query: 442 LPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGM 501
LPESWGFLCPVHTPDG PCGLLNH+ C +A+ S + S + ++
Sbjct: 532 LPESWGFLCPVHTPDGSPCGLLNHLAHKCLIAT-----------SNLDVSGIPEILSTLG 580
Query: 502 IPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYV 561
+ S AVL LDGR+VG + + LR KV IP +LE+GYV
Sbjct: 581 VGSESSSSLEESVAVL---LDGRIVGYCAPKQARVIADTLRHWKVEGHPKIPTELEIGYV 637
Query: 562 PLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGG 620
P S GG YPG+Y+F+ + RPV+ + L ++ +GPFEQ FMEI C P G
Sbjct: 638 PNSNGGQYPGVYIFSQCARMYRPVKYLPL-----DKLDYVGPFEQPFMEIACVPSEITSG 692
Query: 621 RRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQ 680
+TH E PT +LS++AN+TP+SD NQSPRNMYQCQM KQ MG ++ +R D
Sbjct: 693 L-----STHVEFDPTHILSILANMTPFSDFNQSPRNMYQCQMGKQAMGTPGTSIAYRTDN 747
Query: 681 KLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMC 740
KLY LQT QTPI R Y YG+D +P G NA+VAV++YTGYDM+DAMI+NKS+ +RG
Sbjct: 748 KLYRLQTGQTPIARPPLYNAYGLDNFPNGMNAVVAVISYTGYDMDDAMIINKSAHERGFG 807
Query: 741 HGQIYQTETIDLSDDGNKVDRGQKLFRRNKD-----------AKSLHSVIDSDGLPYVGQ 789
+G IY+T+ L D K RG+ RR + + DGLP+VG
Sbjct: 808 YGTIYKTKIYALDD---KEARGRGKSRREITKLFGFAPGGLVKAEWRNHLGEDGLPHVGA 864
Query: 790 MIHPGEPYCSI----YDKTTNSWRTNSR-------KGSESVFVDYVAVDMKNSKNLP-QK 837
+ G+ + YD ++ + K SE ++D + + + N Q
Sbjct: 865 KVAEGDIIAAWHTVQYDPAAETYLNVDKETHFLKYKDSEEGYIDSIRILGAETGNEACQA 924
Query: 838 ANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMT 897
+I++R R P+IGDKFSSRHGQKGVCSQLWP +DMPFS +G++PD+IINPHAFPSRMT
Sbjct: 925 VSIKYRIPRKPVIGDKFSSRHGQKGVCSQLWPAVDMPFS-ESGIQPDVIINPHAFPSRMT 983
Query: 898 IAMLLESVAAK 908
I M +ES+A K
Sbjct: 984 IGMFVESLAGK 994
>gi|320040000|gb|EFW21934.1| DNA-directed RNA polymerase 1 [Coccidioides posadasii str.
Silveira]
Length = 1243
Score = 684 bits (1766), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/911 (42%), Positives = 541/911 (59%), Gaps = 83/911 (9%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAG-SPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
CR+ +Y G+L A +EF+ + VRE GQ P+ML+T RCHL+ +LV
Sbjct: 127 CRERHATYRGRLRARLEFRVNNGDWKESVRE---LGQVPIMLRTNRCHLEKLTPYQLVER 183
Query: 97 KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQ 156
KEE+ E+GGYFI+NG E++ R +I+ ++N+PM+++R+SF R YT V IR VR DQ
Sbjct: 184 KEESEELGGYFIVNGNEKLIRMLIVSRRNFPMAIIRTSFTKRGASYTKFGVQIRSVRPDQ 243
Query: 157 SSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKE 216
+S T L+YL +G+V F + EYL+PV ++LKAL++TND EIF E+
Sbjct: 244 TSQTNVLHYLSDGNVTFRFSWRKNEYLVPVVMILKALIETNDREIF--------ERLIGR 295
Query: 217 KGAVG--SPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETV 274
+G++G + V++R++++L + + ++ +C ++GE F+ V+ + S V
Sbjct: 296 EGSLGINNTFVTDRMELLLRTYKAYGVHSKSKCRAYLGEKFRYVLGMADNVSDEDVGTEF 355
Query: 275 IRDYIFVHLND-------NNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHL 327
+R + HL + +NDKFN+++FM++KL++LV DNPD++ NQE+LL G L
Sbjct: 356 LRKIVLPHLGNQNVTEPQDNDKFNMILFMIRKLYTLVAGDCAPDNPDAVSNQEVLLGGFL 415
Query: 328 ITIYLKEKLEDWLRKGKKLIQDEIENN------GKKFDFFNLANIKKVMEKNPSKQIGTS 381
+ LKE+LE+WLR L +D N KF+ L I +N +G +
Sbjct: 416 YGMILKERLEEWLRSIGPLARDWSNRNLGALFTDPKFEKDFLGRIVARTNEN----LGGA 471
Query: 382 IETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKL 441
+E L TG L + TGLDLQQ +GYT+ AE++NF RFIS FR +HRG+ FA L+TT+VRKL
Sbjct: 472 LEYFLSTGNLVSPTGLDLQQPSGYTIIAEKINFYRFISHFRMIHRGSFFAQLKTTTVRKL 531
Query: 442 LPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGM 501
LPESWGFLCPVHTPDG PCGLLNH+ C +A+ S + S + ++
Sbjct: 532 LPESWGFLCPVHTPDGSPCGLLNHLAHKCLIAT-----------SNLDVSGIPEILSTLG 580
Query: 502 IPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYV 561
+ S AVL LDGR+VG + + LR KV IP +LE+GYV
Sbjct: 581 VGSESSSSLEESVAVL---LDGRIVGYCAPKQARVIADTLRHWKVEGHPKIPTELEIGYV 637
Query: 562 PLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGG 620
P S GG YPG+Y+F+ + RPV+ + L ++ +GPFEQ FMEI C P G
Sbjct: 638 PNSNGGQYPGVYIFSQCARMYRPVKYLPL-----DKLDYVGPFEQPFMEIACVPSEITSG 692
Query: 621 RRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQ 680
+TH E PT +LS++AN+TP+SD NQSPRNMYQCQM KQ MG ++ +R D
Sbjct: 693 L-----STHVEFDPTHILSILANMTPFSDFNQSPRNMYQCQMGKQAMGTPGTSIAYRTDN 747
Query: 681 KLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMC 740
KLY LQT QTPI R Y YG+D +P G NA+VAV++YTGYDM+DAMI+NKS+ +RG
Sbjct: 748 KLYRLQTGQTPIARPPLYNAYGLDNFPNGMNAVVAVISYTGYDMDDAMIINKSAHERGFG 807
Query: 741 HGQIYQTETIDLSDDGNKVDRGQKLFRRNKD-----------AKSLHSVIDSDGLPYVGQ 789
+G IY+T+ L D K RG+ RR + + DGLP+VG
Sbjct: 808 YGTIYKTKIYALDD---KEARGRGKSRREITKLFGFAPGGLVKAEWRNHLGEDGLPHVGA 864
Query: 790 MIHPGEPYCSI----YDKTTNSWRTNSR-------KGSESVFVDYVAVDMKNSKNLP-QK 837
+ G+ + YD ++ + K SE ++D + + + N Q
Sbjct: 865 KVAEGDIIAAWHTVQYDPAAETYLNVDKETHFLKYKDSEEGYIDSIRILGAETGNEACQA 924
Query: 838 ANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMT 897
+I++R R P+IGDKFSSRHGQKGVCSQLWP +DMPFS +G++PD+IINPHAFPSRMT
Sbjct: 925 VSIKYRIPRKPVIGDKFSSRHGQKGVCSQLWPAVDMPFS-ESGIQPDVIINPHAFPSRMT 983
Query: 898 IAMLLESVAAK 908
I M +ES+A K
Sbjct: 984 IGMFVESLAGK 994
>gi|406867542|gb|EKD20580.1| RNA polymerase Rpb2 [Marssonina brunnea f. sp. 'multigermtubi'
MB_m1]
Length = 1209
Score = 684 bits (1765), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/915 (41%), Positives = 550/915 (60%), Gaps = 94/915 (10%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR+ ++Y + EF+ ++ G P R FG+ P+M+ RCHL+ +LV K
Sbjct: 122 CRERHVTYRADMAVQFEFR-INNGDPQTFVR-GFGKLPLMVMGTRCHLENNTPAQLVERK 179
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
EEA E+GGYF++NG+E++ R +++ ++N+PM++ R SFR+R + YT +++R VR DQ+
Sbjct: 180 EEAEELGGYFVVNGIEKIIRLLLVNRRNFPMAIERPSFRNRGKEYTKYGMLMRSVRPDQT 239
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
S T L+YL +G+V F + EYL+PV I+LKAL +TND EIF L
Sbjct: 240 SQTNVLHYLNDGNVIFRFSWRKAEYLIPVMILLKALTETNDREIFEGLV----------- 288
Query: 218 GAVGS-----PLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAE 272
GA GS +++RV+++L + L T+ + ++G F+PV+ + S Y
Sbjct: 289 GAAGSEGANNSFLTDRVEVLLRTHKASGLHTKSKTRAYLGGLFRPVLGVPDNMSNYDCGT 348
Query: 273 TVIRDYIFVHLNDNN-------DKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPG 325
+R + VHL + N DKF +L+FM +KL++LV DNPD++Q+QEILL G
Sbjct: 349 EFLRKIVLVHLGNVNVTHVQDSDKFKMLLFMTRKLYALVAGDCAVDNPDAVQHQEILLGG 408
Query: 326 HLITIYLKEKLEDWLRKGKKL-----IQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGT 380
L + +KE+L+DW+ + +L ++ ENN +F +K + N + +G
Sbjct: 409 FLYGMIIKERLDDWMTRQLRLAIRQYVRKSPENNFTTPEFLKQFPVKLCGKTN--ENLGG 466
Query: 381 SIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRK 440
++E L TG L + TGLDLQQ +G+TV AE++NFLRFIS FR VHRG+ FA L+TT+VRK
Sbjct: 467 ALEYFLSTGNLVSPTGLDLQQVSGFTVVAEKINFLRFISHFRMVHRGSFFAQLKTTTVRK 526
Query: 441 LLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRV-LIGV 499
LLPESWGFLCPVHTPDG PCGLLNH++ CR+ + + D S + ++ + ++G
Sbjct: 527 LLPESWGFLCPVHTPDGSPCGLLNHLSHKCRILT------SASDVSALPALVVELGIVGA 580
Query: 500 GMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVG 559
G + +V V LDGR++G + + LR KV +P DLE+
Sbjct: 581 GSASTKEAVV---------VTLDGRILGWCTPKQAIMIADTLRFWKVEGRRNVPKDLEIC 631
Query: 560 YVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC--PDGG 617
+VP S GG YPG+Y+ +P + VRPV+ + L +E+ LIGP EQ FM I P+
Sbjct: 632 WVPNSHGGQYPGIYMSATPSRMVRPVKYLPLDAED-----LIGPQEQPFMSIAVTEPEII 686
Query: 618 DGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFR 677
G +TH E PT +LS++AN+TP+SD NQSPRNMYQCQMAKQ+MG A ++R
Sbjct: 687 SG------ESTHVEFDPTNILSILANMTPFSDFNQSPRNMYQCQMAKQSMGTPGTATRYR 740
Query: 678 ADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDR 737
+D K Y LQT QTPIVR + +YG D +P G N++VAV++YTGYDM+DAMI+NK S +R
Sbjct: 741 SDNKTYRLQTGQTPIVRAPLHNEYGFDNFPNGMNSVVAVISYTGYDMDDAMIINKGSHER 800
Query: 738 GMCHGQIYQTETIDLSDDGNKVDRG--QKLFRRNKDAK---SLHSVIDSDGLPYVGQMIH 792
G HG +Y+ + +++ + N +KLF ++ + ++ID DGLP +G+++
Sbjct: 801 GFGHGTVYKVKKVNIREGNNSRSSKNVEKLFGFAPGSEVKARVKAMIDEDGLPRIGRLVR 860
Query: 793 PGEPYCSIYDKTTNSWRTNSR------------------KGSESVFVDYV-AVDMKNSKN 833
G+ C +W T SR K E F+D V + +N
Sbjct: 861 EGDMLC--------AWHTVSRDAEGKLVNKDGITHFEKYKDGEMAFIDEVRLIGNENGAE 912
Query: 834 LPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFP 893
Q +I+FR R+P++GDKFSSRHGQKGV SQ WP +DMPF+ +GM+PD+IINPHAFP
Sbjct: 913 PLQVCSIKFRIPRSPVVGDKFSSRHGQKGVVSQKWPSVDMPFT-ESGMQPDVIINPHAFP 971
Query: 894 SRMTIAMLLESVAAK 908
SRMTI M +ES+A K
Sbjct: 972 SRMTIGMFIESLAGK 986
>gi|426223599|ref|XP_004005962.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 2
[Ovis aries]
Length = 1079
Score = 684 bits (1765), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/903 (42%), Positives = 532/903 (58%), Gaps = 63/903 (6%)
Query: 12 LRELVRHHIESFDYMLDEGLSEMFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNF 71
L+EL R H+ESF+Y + EGLS H QA IS++ ++ S V ++F
Sbjct: 35 LQELTRAHVESFNYAVSEGLS----HAVQADISWS-----------VNGISKGVIKQF-L 78
Query: 72 GQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMV 131
G P+M+K++ C+L + L+ EEA EMGGYFI+NG+E+V R +I+P++N+P++MV
Sbjct: 79 GYVPIMVKSKLCNLYSLPPKALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMV 138
Query: 132 RSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLK 191
R ++ R GYT V + CVR++ S+V + L+YL NG+V L F + + + LP+G LK
Sbjct: 139 RPKWKSRGPGYTQYGVSMHCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALK 198
Query: 192 ALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHI 251
ALV +D +IF L KE + VS+ ++I++ E +T+ Q L ++
Sbjct: 199 ALVSFSDYQIFQELI------KGKEDDSFFRNSVSQMLRIVMEE----GCSTQKQVLNYL 248
Query: 252 GEHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSD 311
GE F+ ++ AE + I +HL N +KF +L M +KLF+L + +
Sbjct: 249 GERFRVKLNLPDWYPNEQAAEFLFNQCICIHLKSNTEKFYVLCLMTRKLFALAKGECMEE 308
Query: 312 NPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVME 371
NPDSL NQE+L PG L ++LKEKLE WL K I + + + NL I +
Sbjct: 309 NPDSLMNQEVLTPGQLFLMFLKEKLEAWLVSIKIAIDKKSQKTNVSLNSENLMKIFSL-- 366
Query: 372 KNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFA 431
+ E +L TG L ++TGL Q +G V A++LNF+R++S FR VHRGA FA
Sbjct: 367 ---GIDLTKPFEYLLATGNLRSKTGLGFLQDSGLCVVADKLNFIRYLSHFRCVHRGADFA 423
Query: 432 GLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTS 491
+RTT+VR+LLPESWGFLCPVHTPDGEPCGL+NH+T+ C V + S S
Sbjct: 424 KMRTTTVRRLLPESWGFLCPVHTPDGEPCGLMNHLTAICEVVTQ----------SVYTAS 473
Query: 492 ILRVLIGVGMIPSLPKLVKSGPPAVLS----VLLDGRVVGVIPSSEIEKVVAHLRRLKVS 547
I +L +G+ P V P S VLLDG ++G + LR KV
Sbjct: 474 IPALLCSLGVTP-----VDGTPHRPYSECYPVLLDGVMIGWADKEIAPGIADSLRHFKVL 528
Query: 548 AASVIPDDLEVGYVPLSLGGA-YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQ 606
IP +EV +P++ + YPGLYLFT+P + VRPV+N+ L EE LIG EQ
Sbjct: 529 REKRIPPWMEVVLIPMTGKPSLYPGLYLFTTPCRLVRPVQNLELGKEE-----LIGTMEQ 583
Query: 607 VFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQT 666
+FM + + A TH+E+ P MLSV+AN P+SDHNQSPRNMYQCQM KQT
Sbjct: 584 IFMNVAIFED----EVLAGVTTHQELFPHSMLSVIANFIPFSDHNQSPRNMYQCQMGKQT 639
Query: 667 MGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMED 726
MGF + + R+D KLY LQTPQ+P+VR Y Y +D YP GTNAIVAV++YTGYDMED
Sbjct: 640 MGFPLLTFQDRSDNKLYRLQTPQSPLVRPYMYDYYDMDNYPIGTNAIVAVISYTGYDMED 699
Query: 727 AMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPY 786
AMI+NK+S +RG HG +Y++E IDLS+ + D + D + + +D DGLP+
Sbjct: 700 AMIVNKASWERGFAHGSVYKSEFIDLSEKIKQGDDSLVFGVKAGDPRVMQK-LDDDGLPF 758
Query: 787 VGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHT 845
+G + G+PY S + T K E+ VD + V ++ N K I R
Sbjct: 759 IGAQLKYGDPYYSYLNLNTGEGFVMYYKSKENCIVDNIKVCSNDTGNGKFKCVCITMRVP 818
Query: 846 RNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESV 905
RNP IGDKF+SRHGQKG+ S+LWP DMPF+ +GM PD++ NPH FPSRMTI ML+ES+
Sbjct: 819 RNPTIGDKFASRHGQKGILSRLWPVEDMPFTE-SGMVPDILFNPHGFPSRMTIGMLIESM 877
Query: 906 AAK 908
A K
Sbjct: 878 AGK 880
>gi|260809401|ref|XP_002599494.1| hypothetical protein BRAFLDRAFT_223894 [Branchiostoma floridae]
gi|229284773|gb|EEN55506.1| hypothetical protein BRAFLDRAFT_223894 [Branchiostoma floridae]
Length = 1140
Score = 684 bits (1765), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 394/961 (40%), Positives = 543/961 (56%), Gaps = 97/961 (10%)
Query: 2 ARKKSADFEPLRELVRHHIESFDYMLDEGLSEMFD------------------------- 36
R + PL++LVR H+ESF++ L EGLS
Sbjct: 21 GRPEKTQHRPLQDLVRPHVESFNWFLREGLSLAVQAIPKLDFSLSNGRRISLSYVDASVG 80
Query: 37 -------------------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVM 77
CR+ +Y L A + + +D + ER G+ P+M
Sbjct: 81 VPTVAQGNTFSRTLKVYPAECRERGTTYRAGLQARIAWS-VDGVNQGSVERM-LGEIPLM 138
Query: 78 LKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRD 137
+K+ C++ +L+ EEA EMGGYFI NG+E+V R +++P++NYPM++VR S++
Sbjct: 139 VKSAHCNITKLTPAELIQRHEEAEEMGGYFINNGIEKVVRMLVMPRRNYPMAIVRPSWKG 198
Query: 138 RREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTN 197
R + YT+ V +RCV KDQ++ T+ L+YL NG+V L F + +++ +P+ I+LKALV+T
Sbjct: 199 RGKLYTEYGVSMRCVTKDQTAATIVLHYLTNGTVTLCFVYKKEQFFVPLIIILKALVETT 258
Query: 198 DLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQ- 256
D I++ L KG + V +L + Q+ L T+ L++IGE F+
Sbjct: 259 DQHIYSELI----------KGKEDNSFFKGCVASMLRQAQNEGLMTQAGILKYIGERFRV 308
Query: 257 --PVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPD 314
PV D E V + ++R + +HL+ + DKFN L+ M QKLF+L +N D
Sbjct: 309 KLPVPDWYTDEE---VGQFLLRQCVCIHLDSDWDKFNTLVLMTQKLFALAKGECSVENQD 365
Query: 315 SLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNP 374
S QE+LL GHL LK+KLE WL + + I ++ G + L ++ +
Sbjct: 366 SPMMQEMLLAGHLYLTILKDKLELWLTQLRYGIDKRSQDKGPSY---KLDTVEMMSAMRL 422
Query: 375 SKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLR 434
+ +E + TG + +++ L L Q AG TV A++LNF+R++S FR VHRGA FA +R
Sbjct: 423 CSDVTRGMEHFMATGSVVSKSNLGLMQTAGLTVVADKLNFMRYLSHFRCVHRGAFFAEMR 482
Query: 435 TTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILR 494
TTSVRKLLPE+WGFLCPVHTPDG PCGLLNHMT++C + I +
Sbjct: 483 TTSVRKLLPEAWGFLCPVHTPDGAPCGLLNHMTASCEAVT----------LQPTTVHIPK 532
Query: 495 VLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPD 554
+L +GM P L + P +VLLDGRVVG + ++ + LR LKV+ IP
Sbjct: 533 LLCSLGMAP-LDSPAPAPPVDCYTVLLDGRVVGRVAANMAPDMARKLRMLKVTREGKIPV 591
Query: 555 DLEVGYVPLS-LGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC 613
E+ VP + +PGL+LFT+P + +RPVRN+ + +E+IG FEQV+M I C
Sbjct: 592 MTEIVLVPKTGKASQFPGLFLFTTPARMMRPVRNLF-----TGTVEMIGSFEQVYMNI-C 645
Query: 614 --PDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSV 671
P+ G TH+E+ T +LSV A+ TP+SD NQSPRNMYQCQM KQTMG +
Sbjct: 646 VRPEEAHPGV-----TTHQELRETSILSVAASFTPFSDFNQSPRNMYQCQMGKQTMGTPL 700
Query: 672 QALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILN 731
A R D KLY +Q PQ+P VR Y Y +D+YP GTNA+VAV++YTGYDMEDAMILN
Sbjct: 701 HAFGHRTDNKLYRIQNPQSPTVRPYAYDHYHMDDYPLGTNAVVAVISYTGYDMEDAMILN 760
Query: 732 KSSVDRGMCHGQIYQTETIDLSDDGNKVDRG--QKLFRRNKDAKSLHSVIDSDGLPYVGQ 789
KSS++RG HG IY+TE I L D RG +F + K + +D DGLP +G
Sbjct: 761 KSSLERGFGHGTIYKTEIISLRDLAQSA-RGPVTLVFGCAEGDKRVEGRLDDDGLPPIGS 819
Query: 790 MIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLP--QKANIRFRHTRN 847
+ G+P+ S DK T R K E VD + V + N + K I R RN
Sbjct: 820 KLETGDPFYSYVDKQTGEARVVLYKNQEKAIVDNIKV-LGNDQGTSDMNKVAIVMRINRN 878
Query: 848 PIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAA 907
PIIGDKFSSRHGQKGVCSQ WP DMPF+ GM PD+I NPH FPSRMTI M++ES+A
Sbjct: 879 PIIGDKFSSRHGQKGVCSQQWPVEDMPFTE-GGMTPDIIFNPHGFPSRMTIGMMIESMAG 937
Query: 908 K 908
K
Sbjct: 938 K 938
>gi|303312029|ref|XP_003066026.1| DNA-directed RNA polymerase I polypeptide 2 , putative
[Coccidioides posadasii C735 delta SOWgp]
gi|240105688|gb|EER23881.1| DNA-directed RNA polymerase I polypeptide 2 , putative
[Coccidioides posadasii C735 delta SOWgp]
Length = 1243
Score = 684 bits (1764), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 383/910 (42%), Positives = 540/910 (59%), Gaps = 81/910 (8%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAG-SPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
CR+ +Y G+L A +EF+ + VRE GQ P+ML+T RCHL+ +LV
Sbjct: 127 CRERHATYRGRLRARLEFRVNNGDWKESVRE---LGQVPIMLRTNRCHLEKLTPYQLVER 183
Query: 97 KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQ 156
KEE+ E+GGYFI+NG E++ R +I+ ++N+PM+++R+SF R YT V IR VR DQ
Sbjct: 184 KEESEELGGYFIVNGNEKLIRMLIVSRRNFPMAIIRTSFTKRGASYTKFGVQIRSVRPDQ 243
Query: 157 SSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKE 216
+S T L+YL +G+V F + EYL+PV ++LKAL++TND EIF E+
Sbjct: 244 TSQTNVLHYLSDGNVTFRFSWRKNEYLVPVVMILKALIETNDREIF--------ERLVGR 295
Query: 217 KGAVG--SPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETV 274
+G++G + V++R++++L + + ++ +C ++GE F+ V+ + S V
Sbjct: 296 EGSLGINNTFVTDRMELLLRTYKAYGVHSKSKCRAYLGEKFRYVLGMADNVSDEDVGTEF 355
Query: 275 IRDYIFVHLND-------NNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHL 327
+R + HL + +NDKFN+++FM++KL++LV DNPD++ NQE+LL G L
Sbjct: 356 LRKIVLPHLGNQNVTEPQDNDKFNMILFMIRKLYTLVAGDCAPDNPDAVSNQEVLLGGFL 415
Query: 328 ITIYLKEKLEDWLRKGKKLIQDEIENN------GKKFDFFNLANIKKVMEKNPSKQIGTS 381
+ LKE+LE+WLR L +D N KF+ L I +N +G +
Sbjct: 416 YGMILKERLEEWLRSIGPLARDWSNRNLGALFTDPKFEKDFLGRIVARTNEN----LGGA 471
Query: 382 IETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKL 441
+E L TG L + TGLDLQQ +GYT+ AE++NF RFIS FR +HRG+ FA L+TT+VRKL
Sbjct: 472 LEYFLSTGNLVSPTGLDLQQPSGYTIIAEKINFYRFISHFRMIHRGSFFAQLKTTTVRKL 531
Query: 442 LPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGM 501
LPESWGFLCPVHTPDG PCGLLNH+ C +A+ S + S + ++
Sbjct: 532 LPESWGFLCPVHTPDGSPCGLLNHLAHKCLIAT-----------SNLDVSGIPEILSTLG 580
Query: 502 IPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYV 561
+ S AVL LDGR+VG + + LR KV IP +LE+GYV
Sbjct: 581 VGSESSSSLEESVAVL---LDGRIVGYCAPKQARVIADTLRHWKVEGHPKIPTELEIGYV 637
Query: 562 PLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGR 621
P S GG YPG+Y+F+ + RPV+ + L ++ +GPFEQ FMEI C
Sbjct: 638 PNSNGGQYPGVYIFSQCARMYRPVKYLPL-----DKLDYVGPFEQPFMEIACVQS----E 688
Query: 622 RNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQK 681
+ +TH E PT +LS++AN+TP+SD NQSPRNMYQCQM KQ MG ++ +R D K
Sbjct: 689 ITSGLSTHVEFDPTHILSILANMTPFSDFNQSPRNMYQCQMGKQAMGTPGTSIAYRTDNK 748
Query: 682 LYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCH 741
LY LQT QTPI R Y YG+D +P G NA+VAV++YTGYDM+DAMI+NKS+ +RG +
Sbjct: 749 LYRLQTGQTPIARPPLYNAYGLDNFPNGMNAVVAVISYTGYDMDDAMIINKSAHERGFGY 808
Query: 742 GQIYQTETIDLSDDGNKVDRGQKLFRRNKD-----------AKSLHSVIDSDGLPYVGQM 790
G IY+T+ L D K RG+ RR + + DGLP+VG
Sbjct: 809 GTIYKTKIYALDD---KEARGRGKSRREITKLFGFAPGGLVKAEWRNHLGEDGLPHVGAK 865
Query: 791 IHPGEPYCSI----YDKTTNSWRTNSR-------KGSESVFVDYVAVDMKNSKNLP-QKA 838
+ G+ + YD ++ + K SE ++D + + + N Q
Sbjct: 866 VAEGDIIAAWHTVQYDPAAETYLNVDKETHFLKYKDSEEGYIDSIRILGAETGNEACQAV 925
Query: 839 NIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTI 898
+I++R R P+IGDKFSSRHGQKGVCSQLWP +DMPFS +G++PD+IINPHAFPSRMTI
Sbjct: 926 SIKYRIPRKPVIGDKFSSRHGQKGVCSQLWPAVDMPFS-ESGIQPDVIINPHAFPSRMTI 984
Query: 899 AMLLESVAAK 908
M +ES+A K
Sbjct: 985 GMFVESLAGK 994
>gi|359321639|ref|XP_003639649.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2-like isoform
2 [Canis lupus familiaris]
Length = 1079
Score = 684 bits (1764), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/904 (42%), Positives = 534/904 (59%), Gaps = 65/904 (7%)
Query: 12 LRELVRHHIESFDYMLDEGLSEMFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNF 71
L+EL R H+ESF+Y + EGLS H QA IS+ ++ S + ++F
Sbjct: 35 LQELTRAHVESFNYAVREGLS----HAVQADISWA-----------VNGISKGIIKQF-L 78
Query: 72 GQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMV 131
G P+M+K++ C+L + L+ EE EMGGYFI+NG+E+V R +I+P++N+P++M+
Sbjct: 79 GYIPIMVKSKLCNLHSLPPKALIEHHEEVEEMGGYFIINGIEKVIRMLIMPRRNFPIAMI 138
Query: 132 RSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLK 191
R ++ R GYT V + CVR++ S+V + L+YL NG+V L F + + + LP+G LK
Sbjct: 139 RPKWKTRGPGYTQYGVSMHCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALK 198
Query: 192 ALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHI 251
ALV +D +IF L KE+ + VS+ ++I++ E +T+ Q L ++
Sbjct: 199 ALVSFSDYQIFQELI------KGKEEDSFFRNSVSQMLRIVMEE----GCSTQKQVLNYL 248
Query: 252 GEHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSD 311
GE F+ + AE + I +HL N +KF +L M +KLF+L + D
Sbjct: 249 GERFRVKLSLPDWYPNEQAAEFLFNQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMED 308
Query: 312 NPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDF-FNLANIKKVM 370
NPDSL NQE+L PG L ++LKEK+E WL I+ ++ +K + N N+ ++
Sbjct: 309 NPDSLVNQEVLTPGQLFLMFLKEKMESWLVS----IKIALDKRSQKTNVSINTENLMRIF 364
Query: 371 EKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASF 430
N + E +L TG L ++TGL Q +G V A++LNF+R++S FR VHRGA F
Sbjct: 365 --NLGTDLTKPFEYLLATGNLRSKTGLGFLQDSGLCVVADKLNFIRYLSHFRCVHRGADF 422
Query: 431 AGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRT 490
A +RTT+VR+LLPESWGFLCPVHTPDGEPCGL+NH+T+ C V +
Sbjct: 423 AKMRTTTVRRLLPESWGFLCPVHTPDGEPCGLMNHLTAVCEVVTQ----------CVYTA 472
Query: 491 SILRVLIGVGMIPSLPKLVKSGPPAVLS----VLLDGRVVGVIPSSEIEKVVAHLRRLKV 546
S+ +L +G+ P V P S VLLDG +VG + + LR KV
Sbjct: 473 SVPTLLCSLGVTP-----VDGAPHRPYSECYPVLLDGVMVGWVDKELAPSIAESLRHFKV 527
Query: 547 SAASVIPDDLEVGYVPLSLGGA-YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFE 605
IP +EV +P++ + YPGL+LFT+P + VRPV+N+ L EE LIG E
Sbjct: 528 LKEKRIPPWMEVALIPMTGKPSLYPGLFLFTTPCRLVRPVQNLELGKEE-----LIGTME 582
Query: 606 QVFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQ 665
Q+FM I + A TH+E+ P +LSV+AN P+SDHNQSPRNMYQCQM KQ
Sbjct: 583 QIFMNIAIFED----EVLAGVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQ 638
Query: 666 TMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDME 725
TMGF + + R+D KLY LQTPQ+P+VR Y Y +D YP GTNAIVAV++YTGYDME
Sbjct: 639 TMGFPLLTYQARSDNKLYRLQTPQSPLVRPYMYDYYDMDNYPIGTNAIVAVISYTGYDME 698
Query: 726 DAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLP 785
DAMI+NK+S +RG HG +Y++E IDLS+ + D + D + L +D DGLP
Sbjct: 699 DAMIVNKASWERGFAHGSVYKSEFIDLSEKIKQGDDSLVFGVKPGDPRILQK-LDDDGLP 757
Query: 786 YVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRH 844
++G + G+PY S + T K E+ VD + V ++ N K I R
Sbjct: 758 FIGARLQYGDPYYSYLNLNTGESFVTYYKSKENCIVDNIKVCSNDTGNGRFKCVCITMRV 817
Query: 845 TRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLES 904
RNP IGDKF+SRHGQKG+ S+LWP DMPF+ +GM PD++ NPH FPSRMTI ML+ES
Sbjct: 818 PRNPTIGDKFASRHGQKGILSRLWPVEDMPFTE-SGMVPDILFNPHGFPSRMTIGMLIES 876
Query: 905 VAAK 908
+A K
Sbjct: 877 MAGK 880
>gi|410929909|ref|XP_003978341.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2-like
[Takifugu rubripes]
Length = 1134
Score = 684 bits (1764), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 366/878 (41%), Positives = 526/878 (59%), Gaps = 52/878 (5%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR + SY GKL+AD+ + ++++ + G P+M+K++ C+L G ++LV
Sbjct: 103 CRGRRCSYKGKLVADISWSINGIPKGIIKQ--SLGHLPIMVKSQLCNLHGLTPRELVEHH 160
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
EEA EMGGYFI+NG+E+V R +I+P++NYP++M R ++ R +GYT + +RCV+ D +
Sbjct: 161 EEAEEMGGYFIVNGIEKVIRMLIMPRRNYPIAMSRPKWKSRGQGYTQYGMAMRCVKDDHT 220
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
++ + L+YL NG+V L F Q + + LP+G LKALVD +D I+ L +E
Sbjct: 221 AINMTLHYLDNGTVMLNFIYQKELFFLPLGFALKALVDFSDFHIYQELV------KGRED 274
Query: 218 GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRD 277
+ V+E +++++ E T+ + L +GE F+ ++ + + A ++ +
Sbjct: 275 NSFYKKCVTEMLRLVMEE----GCITQSKVLNFLGERFRVKMNLPEWYTNEQCAHILLDE 330
Query: 278 YIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLE 337
+ +HL N +KF +L M +KLF+ + +NPDS+ QE+L PG L ++LKE++
Sbjct: 331 CVCIHLKTNVEKFYMLCLMTRKLFTFAKQECMEENPDSITFQEVLTPGQLYLMFLKERMA 390
Query: 338 DWLRKGKKLIQDEIENNGKKFDF-FNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTG 396
WL ++ E + + +N N+ K+ N I S E +L TG L++++G
Sbjct: 391 AWLVS----VKLAFEKKAARLNLSWNAENVMKIF--NMGADISKSFEYLLATGNLSSKSG 444
Query: 397 LDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPD 456
L + Q G V A++LNF+R++S FR VHRGA+FA +RTTSVRKLLPESWGFLCPVHTPD
Sbjct: 445 LGMLQATGLCVVADKLNFIRYLSHFRCVHRGAAFAKMRTTSVRKLLPESWGFLCPVHTPD 504
Query: 457 GEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAV 516
GEPCGL+NHMT+ C + + S TS+ +L +G+ P V P
Sbjct: 505 GEPCGLMNHMTANCEIVAQAVST----------TSLPALLCSLGVTP-----VDGAPGQA 549
Query: 517 LS----VLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGA-YPG 571
S VLLDG VVG + S VV LRR KV IP E+ VP + + YP
Sbjct: 550 YSDCYPVLLDGAVVGWVESELAPAVVDSLRRFKVLKEKKIPAWTEIVLVPKTGKPSLYPA 609
Query: 572 LYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEE 631
L LFT+P + +RPV+N+S+ +E LIG FEQ++M + G TH+E
Sbjct: 610 LLLFTTPCRLMRPVQNLSVGRQE-----LIGTFEQLYMNV----GIFEDEVTPGVTTHQE 660
Query: 632 IHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTP 691
+ P MLSVVAN PYSDHNQSPRNMYQCQM KQTMGF + R+D KLY LQTPQ+P
Sbjct: 661 LFPHSMLSVVANFIPYSDHNQSPRNMYQCQMGKQTMGFPLHTFLDRSDNKLYRLQTPQSP 720
Query: 692 IVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETID 751
+VR + Y Y +D YP+GTNAIVAV++YTGYDMEDAMI+NK+S +RG HG IY+TE +D
Sbjct: 721 LVRPSMYDHYDLDNYPSGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSIYKTEVVD 780
Query: 752 LSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTN 811
L++ D +F + +D+DGLP++G ++ G+P S + T
Sbjct: 781 LAERVKGDD--SVVFGTGPGGPGVEDKLDADGLPHIGSVLRHGDPLYSYINLNTGQSVIC 838
Query: 812 SRKGSESVFVDYVAV-DMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPD 870
+ E+ VD + + N ++ I R RNP IGDKF+SRHGQKG+ S+LWP
Sbjct: 839 YYRSQEACVVDNIKICSNDNGSGRFKRVCITTRVPRNPTIGDKFASRHGQKGILSRLWPA 898
Query: 871 IDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
DMPF+ +GM PD++ NPH FPSRMTI ML+ES+A K
Sbjct: 899 EDMPFTE-SGMCPDILFNPHGFPSRMTIGMLIESMAGK 935
>gi|444710488|gb|ELW51468.1| DNA-directed RNA polymerase I subunit RPA2 [Tupaia chinensis]
Length = 1135
Score = 683 bits (1763), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 389/955 (40%), Positives = 545/955 (57%), Gaps = 95/955 (9%)
Query: 2 ARKKSADFEPLRELVRHHIESFDYMLDEGLSEMFD------------------------- 36
A++K+A L+EL R H+ESF+Y + EGLS
Sbjct: 29 AQQKAA----LQELTRAHVESFNYAVREGLSHAVQAIPPFEFAFNNERISLTIVDAVISP 84
Query: 37 -----------------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLK 79
CR + +Y GKL AD+ + ++++ G P+M+K
Sbjct: 85 PTVPKGTICKELNVYPAECRGRRSTYRGKLTADINWAVNGISKGIIKQFL--GYVPIMVK 142
Query: 80 TRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRR 139
++ C+L Q L+ EEA EMGGYFI+NG+E+V R +I+P++N+P++MVR ++ R
Sbjct: 143 SQLCNLYNLPPQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMVRPKWKTRG 202
Query: 140 EGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDL 199
GYT V + CVR++ S+V + L+YL NG+V L F + + + LP+G LKALV+ +D
Sbjct: 203 PGYTQYGVSMHCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALKALVNFSDY 262
Query: 200 EIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVI 259
+IF L KE+ + VS+ ++I++ E +T+ Q L ++GE F+ +
Sbjct: 263 QIFQELI------KGKEEDSFFRNSVSQMLRIVVEE----GCSTQKQVLNYLGECFRVKL 312
Query: 260 DGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQ 319
+ S AE + I +HL + +KF +L M +KLF+L + +NPDSL NQ
Sbjct: 313 NLTDWYSNEQAAEFLFDQCICIHLKSSTEKFYVLCLMTRKLFALAKGECMEENPDSLVNQ 372
Query: 320 EILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIG 379
E+L PG L ++LKEK+E WL K + + + NL I N +
Sbjct: 373 EVLTPGQLFLMFLKEKMEAWLVSIKIALDKRAQKTNVSINTENLMRIF-----NLGTDLT 427
Query: 380 TSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVR 439
E +L TG L ++TGL Q +G V A++LNF+R++S FR VHRGA FA +RTT+VR
Sbjct: 428 RPFEYLLATGNLRSKTGLGFLQDSGLCVVADKLNFVRYLSHFRCVHRGADFAKMRTTTVR 487
Query: 440 KLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGV 499
+LLPESWGFLCPVHTPDGEPCGL+NH+T+ C V + + TSI +L +
Sbjct: 488 RLLPESWGFLCPVHTPDGEPCGLMNHLTAICEVVTQF----------VYTTSIPALLCNL 537
Query: 500 GMIPSLPKLVKSGPPAVLS----VLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDD 555
G+ P V P S VLLDG +VG + V LR KV IP
Sbjct: 538 GVTP-----VDGAPHRPYSECYPVLLDGVMVGWVDKELAPGVADSLRHFKVLREKRIPPW 592
Query: 556 LEVGYVPLSLGGA-YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCP 614
+EV +P++ + YPGL+LFT+P + VRPV+N+ L EE LIG EQ+FM I
Sbjct: 593 MEVALIPMTGKPSLYPGLFLFTTPCRLVRPVQNLELGKEE-----LIGTMEQIFMNIAIF 647
Query: 615 DGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQAL 674
+ A TH+E+ P +LSV+AN P+SDHNQSPRNMYQCQM KQTMGF +
Sbjct: 648 ED----EVAAGVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTY 703
Query: 675 KFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSS 734
+ R+D KLY LQTPQ+P+VR Y Y +D YP GTNAIVAV++YTGYDMEDAMI+NK+S
Sbjct: 704 QDRSDNKLYRLQTPQSPLVRPYMYDYYEMDNYPIGTNAIVAVISYTGYDMEDAMIVNKAS 763
Query: 735 VDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPG 794
+RG HG +Y++E IDLS+ + D + D ++L +D DGLP++G + G
Sbjct: 764 WERGFAHGSVYKSEFIDLSEKIKQGDDSLVFGVKPGDPRTLQK-LDDDGLPFIGTKLQYG 822
Query: 795 EPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHTRNPIIGDK 853
+PY S + T K E+ VD + V ++ + K I R RNP IGDK
Sbjct: 823 DPYYSYLNLNTGESFVTYYKSKENCIVDNIKVCSNDTGSGKFKCVCITMRVPRNPTIGDK 882
Query: 854 FSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
F+SRHGQKG+ S+LWP DMPF+ +GM PD++ NPH FPSRMTI ML+ES+A K
Sbjct: 883 FASRHGQKGILSRLWPVEDMPFTE-SGMVPDILFNPHGFPSRMTIGMLIESMAGK 936
>gi|154291829|ref|XP_001546494.1| hypothetical protein BC1G_14991 [Botryotinia fuckeliana B05.10]
Length = 1207
Score = 683 bits (1762), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/903 (41%), Positives = 547/903 (60%), Gaps = 70/903 (7%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR+ ++Y GK+ A +E+ ++ G P R + GQ P+ML + +CHLQ +LV K
Sbjct: 121 CRERHVTYRGKMSARMEYS-INNGDPKEFIR-DLGQLPLMLMSNKCHLQNNSPAQLVQKK 178
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
EE+ E+GGYF++NG+E++ R +++ ++N+PM+++R SF+ R YT+ ++IR VR DQ+
Sbjct: 179 EESEELGGYFVVNGIEKIIRLLVVNRRNFPMAIIRPSFKGRGPTYTEFGMLIRSVRPDQT 238
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
S T L+YL +G+V F + E+L+P ++LKALV+TND EIF L K
Sbjct: 239 SQTNVLHYLNDGNVTFRFSWRKNEFLVPAMMILKALVETNDKEIFEGLVGA-----AGSK 293
Query: 218 GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRD 277
GA + +++RV+++L + L T+ + ++GE F+ V+ + S Y V +R
Sbjct: 294 GAENT-FLTDRVELLLRTYKAYGLYTKSKTRAYLGEKFRIVLGVPDTMSNYDVGTEFLRK 352
Query: 278 YIFVHLNDNN-------DKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITI 330
+ VHL + + DKF +L+FM +KL+SLV DNPD++QNQEILL G L +
Sbjct: 353 IVLVHLGNTDVTEAQDKDKFKMLLFMTRKLYSLVAGDCAGDNPDAVQNQEILLGGFLFGM 412
Query: 331 YLKEKLEDWLRKGKKL-----IQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETM 385
+KE+LEDWL ++ ++ ENN +F +K N +Q+G ++E
Sbjct: 413 IIKERLEDWLHTSLRMALRDYVRRSPENNFATPEFLKDFPVKICSRTN--EQVGGALEYF 470
Query: 386 LKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPES 445
+ TG L + TGLDLQQ +G+TV AE++NFLRFI+ FR +HRG+ FA L+TT+VRKLLPES
Sbjct: 471 MSTGNLVSPTGLDLQQTSGFTVVAEKINFLRFIAHFRMIHRGSFFAQLKTTTVRKLLPES 530
Query: 446 WGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSL 505
WGF+CPVHTPDG PCGLLNH++ C + ++ ++ K+ + + V G
Sbjct: 531 WGFMCPVHTPDGSPCGLLNHLSHKCIILTHAS---DVSALPKLLSELGVVSTG------- 580
Query: 506 PKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSL 565
S + V LDG+++G + + LR KV +P +LE+GY+P S
Sbjct: 581 ----SSSTDESVVVQLDGKIMGWCSPKQSLVIADTLRYWKVEKTHGVPTNLEIGYIPNSH 636
Query: 566 GGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAF 625
GG YPG+YL +P + VRPV+ + L E+ +GP EQ FM I + +
Sbjct: 637 GGQYPGIYLSAAPARMVRPVKYLPLDKED-----FVGPLEQPFMSIAVTEQ----EIESG 687
Query: 626 PATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHL 685
TH E PT +LS++AN+TP+SD NQSPRNMYQCQM KQ+MG A+++R D K Y L
Sbjct: 688 EHTHVEFDPTHILSILANMTPFSDFNQSPRNMYQCQMGKQSMGTPGTAIRYRTDNKAYRL 747
Query: 686 QTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIY 745
QT QTPIVR + +YG D +P G N++VAV++YTGYDM+DAMI+NKS+ +RG HG IY
Sbjct: 748 QTGQTPIVRAPLHNEYGFDNFPNGMNSVVAVISYTGYDMDDAMIINKSAHERGFGHGTIY 807
Query: 746 QTETIDLSDDGNKVDRG---QKLFRRNKDA---KSLHSVIDSDGLPYVGQMIHPGEPYCS 799
+T+ +L ++G+K +KLF + ID DGLP++G+M+ G+ +
Sbjct: 808 KTKKYEL-EEGHKSRSAKNIKKLFGFAPGGLVKAEWKAAIDEDGLPFIGRMVQNGDLIAA 866
Query: 800 IYDKTTNSWRTNSR-------------KGSESVFVDYV-AVDMKNSKNLPQKANIRFRHT 845
+ T S N + K +E F++ V + +N Q +++ R
Sbjct: 867 WH---TVSMDENGKYVNRDGQTHFEKYKETEIAFIEEVRLIGNENGIEPCQAISVKLRIP 923
Query: 846 RNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESV 905
R+P+IGDKFSSRHGQKGVCSQ WP +DMPF+ +G++PD IINPHAFPSRMTI M +ES+
Sbjct: 924 RSPVIGDKFSSRHGQKGVCSQKWPAVDMPFT-ESGIQPDTIINPHAFPSRMTIGMFVESL 982
Query: 906 AAK 908
A K
Sbjct: 983 AGK 985
>gi|412990492|emb|CCO19810.1| RNA Polymerase subunit 2 [Bathycoccus prasinos]
Length = 1149
Score = 682 bits (1761), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 371/887 (41%), Positives = 530/887 (59%), Gaps = 56/887 (6%)
Query: 38 CRQAKISYTGKLMADVEFQYLDA--GSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVS 95
CR+ +Y G LM+ V + + + PV + FP+M+ + CHL+ D L+
Sbjct: 105 CRETGETYCGNLMSTVCHKIVGSCRDHPVHKNIIKICSFPIMVASHACHLESLDKIGLIK 164
Query: 96 LKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKD 155
EE E GGYFI+NG+ER+ R +I +++Y + +VRSSF R ++ A IRCV K
Sbjct: 165 HGEEDTESGGYFIVNGIERIIRLLIQQRRHYVLGLVRSSFLRRGALFSKFATSIRCVDKT 224
Query: 156 QSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIF-NHLTCCYDEKYK 214
+ S T++L+Y+ GS RLG ++ +E+ +PVGI+++A+ D+++ EIF N C E
Sbjct: 225 EISSTIRLHYMKTGSARLGLTIERQEFYIPVGIIIRAITDSSEKEIFMNSDYRCNSE--- 281
Query: 215 KEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETV 274
+ L+++ + L E D + +++ L++IG++F+ ++ G + S + E
Sbjct: 282 -------NCLINDCIINCLHEATDADILSKMDALRYIGKYFRNLLRGQKFVSDVELGEFF 334
Query: 275 IRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKE 334
I YIF HL ++K NLL+FMLQKL +LV DNPD+L +QEI+LPG L+ L E
Sbjct: 335 IARYIFTHLKRQSEKANLLLFMLQKLTALVQGLCKPDNPDTLAHQEIMLPGSLLQGLLYE 394
Query: 335 KLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK------------QIGTSI 382
K+E L + + Q F+++ KV P+ IG
Sbjct: 395 KMEHVLEQIRLKFQA----------LFDVSYTDKVEALEPNSIQNSILQVIQKYDIGRHF 444
Query: 383 ETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLL 442
E L TG L +++GL L Q +G+T+ A++LN+LRF+S FR+VHRGA F LRTT++RKLL
Sbjct: 445 EYFLATGNLVSKSGLGLSQSSGFTIVADKLNYLRFLSHFRSVHRGAYFTELRTTTIRKLL 504
Query: 443 PESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMI 502
PESWGFLCP+HTPDG PCGLLNH+ C++ ++ DF +R ++ + L G+
Sbjct: 505 PESWGFLCPIHTPDGSPCGLLNHLAGECKIVV---AKTRDTDFDLVRKTVKKSL-GLNF- 559
Query: 503 PSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVP 562
+ ++L VLLDG ++G + + V LRR KV ++S IP DLE+ +V
Sbjct: 560 EFTNDSNRENLESLLPVLLDGLLIGSLHERDAANAVRVLRRAKVDSSSYIPRDLEIAHVT 619
Query: 563 LSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRR 622
GG YPG+Y+F+S + VRPV S N+ELIG EQ FM I+ DG +
Sbjct: 620 FRKGGVYPGIYIFSSSSRLVRPVLQTS-----GGNVELIGTLEQSFMSIKTQDGENRDFC 674
Query: 623 NAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKL 682
+F +HEEI+P LS VA+LTP+SD+NQSPRNMYQCQM KQTMG + + FR+D KL
Sbjct: 675 KSFKYSHEEIYPDSFLSAVASLTPWSDYNQSPRNMYQCQMGKQTMGVPMHSFPFRSDSKL 734
Query: 683 YHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHG 742
Y L TPQ PI T TY KYGID YP GTNA+VAVL+YTGYDMEDAMI+NK S++RG+ H
Sbjct: 735 YRLHTPQRPIALTKTYDKYGIDNYPLGTNAVVAVLSYTGYDMEDAMIMNKFSMERGLAHA 794
Query: 743 QIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYD 802
+Y+TE + L D + L + DA P G ++ G+ + S+ +
Sbjct: 795 TLYKTEGLTLKDKNDTFTVSGPLNQTKFDAS-----------PLPGSILQKGDSFISVSN 843
Query: 803 KTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKG 862
+ + + KG + VD V + ++ +K ++ R RNPIIGDKFSSRHGQKG
Sbjct: 844 RISGKLKKTMLKGEDKGIVDRVKISASQEQSSYEKLDVTLRFNRNPIIGDKFSSRHGQKG 903
Query: 863 VCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKE 909
V S LWP+ D+PF G++PD+IINPHAFPSRMTI ML+ES+A+KE
Sbjct: 904 VLSYLWPEEDLPFIERNGIKPDIIINPHAFPSRMTIGMLMESLASKE 950
>gi|417405959|gb|JAA49665.1| Putative rna polymerase ii second largest subunit [Desmodus
rotundus]
Length = 1135
Score = 682 bits (1761), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/942 (40%), Positives = 536/942 (56%), Gaps = 85/942 (9%)
Query: 12 LRELVRHHIESFDYMLDEGLSEMFD----------------------------------- 36
L+EL + H+ESF+Y + EGLS
Sbjct: 35 LQELTQAHVESFNYAVREGLSHAVQAIPPFEFAFKDERISLTIVDAVISPPTVPKGSICK 94
Query: 37 -------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGAD 89
CR + +Y GKL AD+ + +++ G P+M+K++ C+L G
Sbjct: 95 ELNVYPAECRGRRSTYRGKLTADISWAVNGISKGTIKQFL--GYVPIMVKSKLCNLYGLS 152
Query: 90 SQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVI 149
+ L+ EE EMGGYFI+NG+E+V R +I+P++N+P++M+R ++ R GYT V +
Sbjct: 153 PKALIEHHEEPEEMGGYFIVNGIEKVIRMLIMPRRNFPIAMIRPKWKARGPGYTQYGVSM 212
Query: 150 RCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY 209
CVR++ S+V + L+YL NG+V L F Q + + LP+G LKALV +D +IF L
Sbjct: 213 HCVREEHSAVNMNLHYLENGTVMLNFIYQKELFFLPLGFALKALVSFSDYQIFQELI--- 269
Query: 210 DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYA 269
KG + V +L V D +T+ Q L ++GE F+ + S
Sbjct: 270 -------KGKEDNSFFRNSVSQMLRIVMDEGCSTQKQVLDYLGERFRVKLGLPDWYSDEQ 322
Query: 270 VAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
A+ + I +HL N +KF +L M +KLF+L + DNPDSL NQE+L PG L
Sbjct: 323 AAKCLFDQCICIHLKSNTEKFYILCLMTRKLFALAKGECMEDNPDSLVNQEVLTPGQLFL 382
Query: 330 IYLKEKLEDWLRKGKKLIQDEIENNGKKFDF-FNLANIKKVMEKNPSKQIGTSIETMLKT 388
++LKEK+E WL I+ ++ +K + N N+ K++ N + E +L T
Sbjct: 383 MFLKEKMEAWLVS----IKIGLDKKAQKTNMSINTENLMKIL--NLGTDLTKPFEYLLAT 436
Query: 389 GRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGF 448
G L ++TGL Q +G V A++LNF+R++S FR VHRGA FA +RTT+VR+LLPESWGF
Sbjct: 437 GNLRSKTGLGFLQDSGLCVVADKLNFVRYLSHFRCVHRGADFAKMRTTTVRRLLPESWGF 496
Query: 449 LCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKL 508
LCPVHTPDGEPCGL+NH+T+TC V + + + + L +GV + P
Sbjct: 497 LCPVHTPDGEPCGLMNHLTATCEVVTQFVYTAS--------SPALLCNLGVTPVDGTPHR 548
Query: 509 VKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGA 568
+ VLLDG ++G + V A LR KV IP +EV VP++ +
Sbjct: 549 PHA---ECYPVLLDGVMIGWVDKELAPSVAASLRHFKVLREKRIPPWMEVALVPITGKPS 605
Query: 569 -YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPA 627
YPGL+LFT+P + VRPV+N+ L EE LIG EQ+FM I + A
Sbjct: 606 LYPGLFLFTTPCRLVRPVQNLELGKEE-----LIGTMEQLFMNIAVFED----EVFAGVT 656
Query: 628 THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
TH+E+ P +LSV+AN P+SDHNQSPRNMYQCQM KQTMGF + + R+D KLY LQT
Sbjct: 657 THQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQT 716
Query: 688 PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
PQ+P+VR Y Y +D YP GTNA+VAV++YTGYDMEDAMI+NK+S +RG HG +Y++
Sbjct: 717 PQSPLVRPCMYDHYDMDNYPIGTNAVVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKS 776
Query: 748 ETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNS 807
E IDLS+ + D + D +++ +D DGLP++G + G+PY S + T
Sbjct: 777 EFIDLSEKIKQGDDSLVFGVKPGDPRTVQK-LDGDGLPFIGAQLQYGDPYYSYVNLNTGE 835
Query: 808 WRTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHTRNPIIGDKFSSRHGQKGVCSQ 866
K E+ VD + V ++ + K I R RNP IGDKF+SRHGQKG+ S+
Sbjct: 836 SSVMFYKSKENCIVDNIKVCSNDTGSGKFKCVCITVRIPRNPTIGDKFASRHGQKGILSR 895
Query: 867 LWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
LWP DMPF+ +GM PD++ NPH FPSRMTI ML+ES+A K
Sbjct: 896 LWPAEDMPFTE-SGMAPDILFNPHGFPSRMTIGMLIESMAGK 936
>gi|126303601|ref|XP_001373893.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2-like isoform
1 [Monodelphis domestica]
Length = 1135
Score = 682 bits (1760), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/955 (39%), Positives = 539/955 (56%), Gaps = 97/955 (10%)
Query: 5 KSADFEPLRELVRHHIESFDYMLDEGLSEMFD---------------------------- 36
K L+EL R HIESF+Y + EGLS
Sbjct: 28 KEQQLPALQELTRAHIESFNYAMREGLSHAVQAIPPLEFAFKDERITLAIVDAVVSPPMV 87
Query: 37 --------------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRR 82
CR + +Y GKL AD+ + G+P + + G P+M+K+R
Sbjct: 88 PKGSICKELKVYPAECRGRRSTYRGKLTADISWSV--NGNPKGIIKQSLGYIPIMVKSRL 145
Query: 83 CHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGY 142
C+L + L+ EEA EMGGYFI+NG+E++ R +I+P++N+P++M+R ++ R GY
Sbjct: 146 CNLYNLPPKSLIEHHEEAEEMGGYFIINGIEKIIRMLIMPRRNFPIAMIRPKWKTRGPGY 205
Query: 143 TDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIF 202
T + + CVR + +++ + L+YL NGSV + F + + LP+G VLKALV +D +IF
Sbjct: 206 THYGISMHCVRDEHTAINMNLHYLENGSVMVNFIYHKELFFLPLGFVLKALVAFSDYQIF 265
Query: 203 NHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGL 262
L +E+ + VS+ +++++ E T+ Q L ++GE F+ +
Sbjct: 266 QELI------KGREENSFFRNCVSQMLRVVMEE----GCITQKQVLNYLGERFRVKLSLP 315
Query: 263 QSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEIL 322
+ AE ++ + +HL N +KF +L M +KLF+ + +NPDSL NQE+L
Sbjct: 316 DWYTNVQAAEFLLNQCVCIHLKSNEEKFYVLCLMTRKLFTFAKEECMEENPDSLMNQEVL 375
Query: 323 LPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSI 382
PG LI ++LKEK+E WL K + + + NL I + +
Sbjct: 376 TPGRLILMFLKEKMEAWLVSVKIALDKRAQKTNVSMNTENLMKIFSM-----GLDLTRPF 430
Query: 383 ETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLL 442
E L TG L ++TGL + Q +G V A++LNF+R++S FR VHRGA+FA +RTT+VRKLL
Sbjct: 431 EYFLATGNLRSKTGLGMLQDSGLCVVADKLNFIRYLSHFRCVHRGAAFAKMRTTTVRKLL 490
Query: 443 PESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMI 502
PESWGFLCPVHTPDGEPCGL+NHMT+ C V + + +SI +L +G+
Sbjct: 491 PESWGFLCPVHTPDGEPCGLMNHMTAICEVVTQ----------AVYTSSIAPLLCSLGVT 540
Query: 503 PSLPKLVKSGPPA-----VLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLE 557
P G P+ V+L+G +VG + + LR KV IP E
Sbjct: 541 PF------DGTPSQPYSECYPVMLNGIMVGWVEKDLAPAITDSLRNFKVLGKKQIPPWTE 594
Query: 558 VGYVPLSLGGA-YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDG 616
+ +P + + YPGL+LFT+P + +RPV+N+ L EE LIG EQ+FM I +
Sbjct: 595 IVLIPKTGKPSLYPGLFLFTTPCRMIRPVQNLELGKEE-----LIGTLEQIFMNIAIFEN 649
Query: 617 GDGGRRNAFPA--THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQAL 674
P TH+E+ P +LSVVAN P+SDHNQSPRNMYQCQM KQTMGF +
Sbjct: 650 ------EIVPGITTHQELFPHSLLSVVANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTY 703
Query: 675 KFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSS 734
+ R+D KLY LQTPQ+P+VR Y Y +D YP GTNAIVAV++YTGYDMEDAMI+NK+S
Sbjct: 704 QDRSDNKLYRLQTPQSPLVRPYMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKAS 763
Query: 735 VDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPG 794
+RG HG +Y+TE IDLS+ + D + D + L +DSDGLP++G ++ G
Sbjct: 764 WERGFAHGSVYKTELIDLSEKIKQGDDSLVFGVKPGDLRVLQK-LDSDGLPHIGSLLKYG 822
Query: 795 EPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHTRNPIIGDK 853
+P+ S + T K E+ VD + V +S N K+ I R RNP IGDK
Sbjct: 823 DPFYSYLNINTGESFVTYYKNKENCLVDNIKVCSNDSGNGKFKSICITMRIPRNPTIGDK 882
Query: 854 FSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
F+SRHGQKG+ S+LWP DMPF+ +GM PD++ NPH FPSRMTI ML+ES+A K
Sbjct: 883 FASRHGQKGILSRLWPAEDMPFTE-SGMVPDILFNPHGFPSRMTIGMLIESMAGK 936
>gi|149023254|gb|EDL80148.1| RNA polymerase 1-2 [Rattus norvegicus]
Length = 1135
Score = 682 bits (1760), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 384/946 (40%), Positives = 540/946 (57%), Gaps = 93/946 (9%)
Query: 12 LRELVRHHIESFDYMLDEGLSEMFD----------------------------------- 36
L++L R H++SF+Y + EGLS
Sbjct: 35 LQDLTRAHVDSFNYAVLEGLSHAVQAIPPFEFAFKDERISLTIVDAAISPPAVPKGTICK 94
Query: 37 -------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGAD 89
CR + +Y GKL AD+ + ++++ G P+M+K++ C+L
Sbjct: 95 ELNIYPAECRGRRSTYRGKLTADISWAVNGVPKGIIKQFL--GYVPIMVKSKLCNLYNLP 152
Query: 90 SQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVI 149
Q L+ EEA EMGGYFI+NG+E+V R +I+P++N+P++M+R ++ R GYT V I
Sbjct: 153 PQVLIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWKSRGLGYTQFGVSI 212
Query: 150 RCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY 209
CVR++ S+V + L+Y+ NG+V L F + + + LP+G LKALV +D +IF L
Sbjct: 213 HCVREEHSAVNMNLHYVENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELI--- 269
Query: 210 DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYA 269
KE+ + VS+ ++I++ E T+ Q L ++GE F+ +
Sbjct: 270 ---KGKEEDSFFKNSVSQMLRIVMEE----GCHTQKQVLDYLGERFRVKLSLPDWYPNAE 322
Query: 270 VAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
AE + I +HL N DKF LL M +KLF+L + DNPDSL NQE+L PG L
Sbjct: 323 AAEFLFNQCICIHLKSNTDKFYLLCLMTRKLFALARGECMEDNPDSLVNQEVLTPGQLFL 382
Query: 330 IYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTG 389
++LKEK+E+WL K + + + NL I + ++ E +L TG
Sbjct: 383 MFLKEKMENWLLSIKIALDKRAQKTNVSINNENLMKIFSM-----GTELTRPFEYLLATG 437
Query: 390 RLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFL 449
L ++TGL Q +G V A++LNF+R++S FR VHRGA FA +RTT+VRKLLPESWGFL
Sbjct: 438 NLRSKTGLGFMQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVRKLLPESWGFL 497
Query: 450 CPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLV 509
CPVHTPDG PCGLLNH+T+ C V + + SI +L G+G+ P V
Sbjct: 498 CPVHTPDGAPCGLLNHLTAVCEVVTKF----------VYTASIPALLCGLGVTP-----V 542
Query: 510 KSGPPAVLS----VLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSL 565
+ P S VLLDG +VG + +V LRR KV +P +EV +P++
Sbjct: 543 DAAPCRPYSDCYPVLLDGVMVGWVDKELAPEVADTLRRFKVLRERRVPPWMEVALIPMTG 602
Query: 566 GGA-YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRN 623
+ YPGL+LFT+P + VRPV+N+ L EE L+G EQ+FM I D GG
Sbjct: 603 KPSLYPGLFLFTTPCRLVRPVQNLELGKEE-----LVGTMEQLFMNIAIFEDEVFGGV-- 655
Query: 624 AFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLY 683
+TH+E+ P +LSV+AN P+SDHNQSPRNMYQCQM KQTMGF + + R+D KLY
Sbjct: 656 ---STHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLY 712
Query: 684 HLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQ 743
LQTPQ+P+VR Y Y +D YP GTNAIVAV++YTGYDMEDAMI+NK+S +RG HG
Sbjct: 713 RLQTPQSPLVRPCMYDHYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGS 772
Query: 744 IYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDK 803
+Y++E IDLS+ + D + D + + +D+DGLP++G + G+PY +
Sbjct: 773 VYKSEFIDLSEKFKQGDDSLVFGVKPGDPRVMQK-LDNDGLPFIGAKLEFGDPYYGYLNL 831
Query: 804 TTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHTRNPIIGDKFSSRHGQKG 862
T K E+ VD + V ++ + K + R RNP IGDKF+SRHGQKG
Sbjct: 832 NTGEGFVVYYKSKENCVVDNIKVCSNDTGSGKFKCVCVTVRVPRNPTIGDKFASRHGQKG 891
Query: 863 VCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
+ S+LWP DMPF+ +GM PD++ NPH FPSRMTI ML+ES+A K
Sbjct: 892 ILSRLWPAEDMPFTE-SGMMPDILFNPHGFPSRMTIGMLIESMAGK 936
>gi|330819047|ref|XP_003291577.1| RNA polymerase I, second largest subunit [Dictyostelium purpureum]
gi|325078245|gb|EGC31907.1| RNA polymerase I, second largest subunit [Dictyostelium purpureum]
Length = 1117
Score = 682 bits (1759), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 391/951 (41%), Positives = 562/951 (59%), Gaps = 82/951 (8%)
Query: 10 EPLRELVRHHIESFDYMLDEGLSEM--------FDH------------------------ 37
E L+ L++ HI+SFD+ D G+ + F+H
Sbjct: 3 EELKSLIQPHIDSFDFFTDHGIDLILKSNEPLYFEHKERQYKIKFTQLKLGKPVHNFKEK 62
Query: 38 --------CRQAKISYTGKLMADVE-FQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGA 88
R+A ++Y +V ++ +D+ P+ + + G+ P+M+K+R CHL G
Sbjct: 63 EVRFYPNEAREAGVTYDAPFKGEVSLYEGVDSDEPIHKVDVDLGRMPIMVKSRFCHLNGL 122
Query: 89 DSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVV 148
S++L+ +EE E GGYFI+NG E+V R +++ K N+P+++ R ++ +R GYT +
Sbjct: 123 SSEELIEKREEELEQGGYFIVNGNEKVVRMLVMTKANHPVALHRKAWTNRGPGYTKFGIT 182
Query: 149 IRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCC 208
IRCVR D++S+T L+Y+ +G + L F + +E+ LP ++LKAL DT + EI+ +L
Sbjct: 183 IRCVRPDRTSITNNLHYISDGQITLRFLYRRQEFFLPATLLLKALKDTTEREIYENLV-- 240
Query: 209 YDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYY 268
+G + +++RV++ L E + ++ T+ + L +IG F+ S S
Sbjct: 241 --------QGDNENTFLTDRVELSLREQKINNINTQEEVLDYIGSRFRARSQLPSSFSNT 292
Query: 269 AVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLI 328
+ + I Y+FVHL + DK+NLL+ M+QKL+S+V S +DN DS E+LL G +
Sbjct: 293 QIGQWFIDSYVFVHLPNYKDKYNLLVLMIQKLYSMVAGKSGTDNIDSAAFHEVLLAGQIF 352
Query: 329 TIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANI-KKVMEKNPSKQIGTSIETMLK 387
L EKL ++L + E+ K+ D L N+ KK +EKN +IG L
Sbjct: 353 GSILGEKLTEYLESTRSFTLKHFEDKKKEND--KLENVFKKTVEKN--FKIGDRFNYFLA 408
Query: 388 TGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWG 447
TG L + +GLDLQQ +G+ V A++LNFLRFIS FR++HRGA FA ++TTS+RKL+PESWG
Sbjct: 409 TGNLRSNSGLDLQQTSGFVVIADKLNFLRFISHFRSIHRGAFFATMKTTSIRKLMPESWG 468
Query: 448 FLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPK 507
FLCPVHTPDG PCGLLNH+TS C V D + + K R I L GM+P
Sbjct: 469 FLCPVHTPDGAPCGLLNHLTSACLVT--VDPLQD-QKVLKARPLIPSFLATHGMLPIDMT 525
Query: 508 LVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK-VSAASVIPDDLEVGYVPLSL- 565
V S L++ LDG V+G I E++V LR L+ V IP +E+ Y P S
Sbjct: 526 TVFSH--QYLTITLDGCVIGKIEQKAGEELVTMLRYLRSVGTEPAIPKTIEISYSPPSSV 583
Query: 566 -GGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRN 623
YPG+ LFTS +F+RPV N++ EE LIGP EQ++MEI P+ G
Sbjct: 584 ENSQYPGISLFTSGARFMRPVINLTSGKEE-----LIGPQEQLYMEIAVVPNEVIKG--- 635
Query: 624 AFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLY 683
TH E PT M S++ANLTP+SD+NQSPRNMYQCQMAKQTMG + + FR D KLY
Sbjct: 636 --VTTHIETSPTAMFSLLANLTPFSDYNQSPRNMYQCQMAKQTMGTPLHSYPFRTDNKLY 693
Query: 684 HLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQ 743
+Q Q PIV T KY +++Y G NA++AV++ TGYDMEDAMI+NKS+ +RG HG
Sbjct: 694 KIQNIQKPIVHTKNQFKYRVNDYAHGCNAVIAVISNTGYDMEDAMIINKSAYERGFGHGS 753
Query: 744 IYQTETIDLSDDGNKVDRGQKLFRR-NKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYD 802
+Y+ E IDL + ++ + + F R N +L ID DGLP+VG++I PGEPY +
Sbjct: 754 VYKNEYIDLDEGLSRFESKKTFFGRPNSSVDNLGDFIDVDGLPFVGRLIKPGEPYYTYIR 813
Query: 803 KTTNSWRTNSRKGSESVFVDYVAVDMKN--SKNLPQKAN---IRFRHTRNPIIGDKFSSR 857
+ KG E +++ V + + + P K N ++ R+ RNP+IGDKFSSR
Sbjct: 814 PSDGKQVVKDYKGKEEAYIEEVRILFASGGTGREPSKINNICVKLRYNRNPVIGDKFSSR 873
Query: 858 HGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
HGQKGV SQLWP+++MPF+ +GM+PD+IINP+AFPSRMTI ML+E +A K
Sbjct: 874 HGQKGVLSQLWPEVNMPFTE-SGMKPDVIINPNAFPSRMTIGMLVEILAGK 923
>gi|291386321|ref|XP_002709638.1| PREDICTED: RNA polymerase I polypeptide B isoform 2 [Oryctolagus
cuniculus]
Length = 1079
Score = 682 bits (1759), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 386/904 (42%), Positives = 527/904 (58%), Gaps = 65/904 (7%)
Query: 12 LRELVRHHIESFDYMLDEGLSEMFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNF 71
L+EL R H+ESF+Y + EGL H QA IS+ ++ S V ++F
Sbjct: 35 LQELTRAHVESFNYAVREGLG----HAVQADISWA-----------VNGTSKGVIKQF-L 78
Query: 72 GQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMV 131
G P+M+K++ C+L Q L+ EEA EMGGYFI+NG+E+V R +I+P++N+P++MV
Sbjct: 79 GHVPIMVKSKLCNLYNLSPQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMV 138
Query: 132 RSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLK 191
R +R R GYT V + CVR++ S+V + L+YL NG+V L F + + + LP+G LK
Sbjct: 139 RPKWRSRGPGYTQYGVSMHCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALK 198
Query: 192 ALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHI 251
ALV +D +IF L KG V +L V + T+ Q L ++
Sbjct: 199 ALVSFSDYQIFQELI----------KGKEADSFFRNSVSQMLRIVAEEGCFTQKQVLNYL 248
Query: 252 GEHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSD 311
GE F+ ++ AE + I +HL N +KF LL M +KLF+L + +
Sbjct: 249 GECFRVKLNLPDWYPNEQAAEFLFNQCICIHLKSNTEKFYLLCLMTRKLFALAKGECMEE 308
Query: 312 NPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDF-FNLANIKKVM 370
NPDSL NQE+L PG L ++LKEK+E WL I+ ++ +K + N N+ KV
Sbjct: 309 NPDSLVNQEVLTPGQLFLMFLKEKMEAWLTS----IKIALDKKAQKTNISINTENLLKVF 364
Query: 371 EKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASF 430
+ E +L TG L ++TGL Q +G V A++LNF+R++S FR VHRGA F
Sbjct: 365 SM--GADLTRPFEYLLATGNLRSKTGLGFLQDSGLCVVADKLNFIRYLSHFRCVHRGADF 422
Query: 431 AGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRT 490
A +RTT+VR+LLPESWGFLCPVHTPDGEPCGL+NH+T+ C V + + T
Sbjct: 423 AKMRTTTVRRLLPESWGFLCPVHTPDGEPCGLMNHLTAICEVVTQF----------VYTT 472
Query: 491 SILRVLIGVGMIPSLPKLVKSGPPAVLS----VLLDGRVVGVIPSSEIEKVVAHLRRLKV 546
SI +L +G+ P + P S VLLDG +VG + + LR KV
Sbjct: 473 SIPPLLCSLGVTP-----IDGAPHRPYSECYPVLLDGVMVGWVDKELAPGIADSLRLFKV 527
Query: 547 SAASVIPDDLEVGYVPLSLGGA-YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFE 605
IP +EV VP++ + YPGLYLFT+P + VRPV+N+ L EE LIG E
Sbjct: 528 LREKRIPPWMEVALVPMTGKPSLYPGLYLFTTPCRLVRPVQNLELGKEE-----LIGTME 582
Query: 606 QVFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQ 665
Q+F+ + + A TH+E+ P MLSV+AN P+SDHNQSPRNMYQCQM KQ
Sbjct: 583 QLFLNVAIFED----EVLAGVTTHQELFPHSMLSVIANFIPFSDHNQSPRNMYQCQMGKQ 638
Query: 666 TMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDME 725
TMGF + + R+D KLY LQTPQ+P+VR Y Y +D YP GTNAIVAV +YTGYDME
Sbjct: 639 TMGFPLLTYQDRSDNKLYRLQTPQSPLVRPYMYDYYDMDNYPIGTNAIVAVTSYTGYDME 698
Query: 726 DAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLP 785
DAMI+NK+S +RG HG +Y+TE IDLS+ + D + D + L +D DGLP
Sbjct: 699 DAMIVNKASWERGFAHGSVYKTEFIDLSEKIKQGDDSLVFGVKPGDPRILQR-LDDDGLP 757
Query: 786 YVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRH 844
++G + G+PY + T K E+ VD + V ++ + K I R
Sbjct: 758 FIGTKLQYGDPYYGYLNLNTGESFVVYYKSKENCIVDNIKVCSNDTGSGKFKCICITMRV 817
Query: 845 TRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLES 904
RNP IGDKF+SRHGQKG+ S+LWP DMPF+ +GM PD++ NPH FPSRMTI ML+ES
Sbjct: 818 PRNPTIGDKFASRHGQKGILSRLWPVEDMPFTE-SGMVPDILFNPHGFPSRMTIGMLIES 876
Query: 905 VAAK 908
+A K
Sbjct: 877 MAGK 880
>gi|66800165|ref|XP_629008.1| RNA polymerase I, second largest subunit [Dictyostelium discoideum
AX4]
gi|74896752|sp|Q54BM1.1|RPA2_DICDI RecName: Full=DNA-directed RNA polymerase I subunit rpa2; AltName:
Full=DNA-directed RNA polymerase I polypeptide 2;
Short=RNA polymerase I subunit 2
gi|60462371|gb|EAL60592.1| RNA polymerase I, second largest subunit [Dictyostelium discoideum
AX4]
Length = 1130
Score = 682 bits (1759), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 386/963 (40%), Positives = 557/963 (57%), Gaps = 93/963 (9%)
Query: 10 EPLRELVRHHIESFDYMLDEGLSEM--------FDH------------------------ 37
E L+ L++ HI+SFD+ D G+ + F+H
Sbjct: 3 EELKSLIQPHIDSFDFFTDHGIDLVLKDSEPLYFEHNSTQYKIRFTDLKLSRPTRNIVEK 62
Query: 38 --------CRQAKISYTGKLMADV------EFQYLDAGSPVVRER--------FNFGQFP 75
R+ +Y + E +D G+ V + + G+ P
Sbjct: 63 EIKLYPNESRETGTTYNAPFKGAIGLYEVNEMDEMDDGTEVDYNKQEPTHTFEVDLGRLP 122
Query: 76 VMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSF 135
+M+K+R CHL G +KL+ +EE E GGYFI+NG E+V R +++ K N+P+++ R ++
Sbjct: 123 IMVKSRYCHLNGMSPEKLIESREEELEQGGYFIVNGNEKVVRMLVMTKANHPVALHRKAW 182
Query: 136 RDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVD 195
+R GYT + IRCVR D+SS+T L+Y+ +G L F + +E+ LP ++LKAL D
Sbjct: 183 TNRGPGYTKNGITIRCVRPDRSSITNNLHYINDGQTTLRFLYRRQEFFLPATLLLKALKD 242
Query: 196 TNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHF 255
T + EI+ ++ +G + +++RV++ L E + ++ T+ + L +IG F
Sbjct: 243 TTEKEIYENIV----------QGDNENTFLTDRVELSLREQKINNINTQEEVLDYIGSRF 292
Query: 256 QPVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDS 315
+ S S + I ++FVHL + NDK+NLLI M+QKL+++V +DN DS
Sbjct: 293 RARTQFPPSFSNIKIGRWFINQFVFVHLPNYNDKYNLLILMIQKLYAMVGGKCGTDNIDS 352
Query: 316 LQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPS 375
QE+LL GH+ + LKEKL ++L K + E+ K D A +KKV++KN
Sbjct: 353 PAFQEVLLAGHIYGMILKEKLTEYLESTKSFVLKSFEDKKKSGDKLPDA-LKKVLDKN-- 409
Query: 376 KQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRT 435
+I L TG L + +G+DLQQ +G+ V A++LNFLRFIS FR++HRGA FA ++T
Sbjct: 410 FKIADRFSYFLATGNLRSSSGIDLQQTSGFCVIADKLNFLRFISHFRSIHRGAFFATMKT 469
Query: 436 TSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRV 495
T++RKL+PESWGF CPVHTPDG PCGLLNH++S C V ++ K +T +
Sbjct: 470 TAIRKLMPESWGFFCPVHTPDGAPCGLLNHLSSNCLVTVDAAQDPTVQ---KAQTLLPSF 526
Query: 496 LIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK-VSAASVIPD 554
L GM+P +V L++ LDGRV+G I E++V LR L+ + IP
Sbjct: 527 LAAHGMLPI--DMVSVYQHQYLTITLDGRVLGKIEPKAGEEMVKMLRYLRSMGNEPSIPK 584
Query: 555 DLEVGYVPLS--LGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIR 612
+E+ Y P + G Y G+ LFT+ +F+RPV N++ QN ELIGP EQ++MEI
Sbjct: 585 TMEISYAPPTNVENGQYSGISLFTTGARFMRPVVNLT----SGQN-ELIGPQEQLYMEIA 639
Query: 613 C-PDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSV 671
P G TH E PT M S++ANLTP+SD+NQSPRNMYQCQMAKQTMG +
Sbjct: 640 VVPHEVIKG-----VTTHIETSPTAMFSLLANLTPFSDYNQSPRNMYQCQMAKQTMGTPL 694
Query: 672 QALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILN 731
+ FR D KLY +Q Q PIV T K+ ++YP G NA++AV++ TGYDMEDAMI+N
Sbjct: 695 HSYPFRTDNKLYKVQNVQKPIVHTKNQFKFRCNDYPHGCNAVIAVISNTGYDMEDAMIIN 754
Query: 732 KSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRR-NKDAKSLHSVIDSDGLPYVGQM 790
KS+ +RG HG +Y+ E IDL ++ ++ + F R N L ID+DGLP+VG++
Sbjct: 755 KSAYERGFGHGSVYKNEYIDLDQGLSRFEQKKTFFGRPNTVVDELDKFIDTDGLPFVGRL 814
Query: 791 IHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDM--KNSKNLPQKAN---IRFRHT 845
I PGEPY + + T KG E +++ V + + P K N ++ R
Sbjct: 815 IKPGEPYYTYIRPSDGRQVTKDYKGKEEAYIEDVRIIFGPNGATRDPSKINNICVKLRFN 874
Query: 846 RNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESV 905
RNP+IGDKFSSRHGQKGV SQLWP+I+MPF+ +GM+PD+IINP+AFPSRMTI ML+E +
Sbjct: 875 RNPVIGDKFSSRHGQKGVLSQLWPEINMPFTE-SGMKPDVIINPNAFPSRMTIGMLVEIL 933
Query: 906 AAK 908
A K
Sbjct: 934 AGK 936
>gi|301781943|ref|XP_002926383.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2-like isoform
2 [Ailuropoda melanoleuca]
Length = 1079
Score = 682 bits (1759), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/903 (41%), Positives = 530/903 (58%), Gaps = 63/903 (6%)
Query: 12 LRELVRHHIESFDYMLDEGLSEMFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNF 71
L+EL R H+ESF+Y + EGLS H QA IS+ ++ S + ++F
Sbjct: 35 LQELTRAHVESFNYAVREGLS----HAVQADISWA-----------VNGISRGIIKQF-L 78
Query: 72 GQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMV 131
G P+M+K++ C+L + L+ EEA EMGGYFI+NG+E+V R +I+P++N+P++M+
Sbjct: 79 GYVPIMVKSKLCNLHSLPPRALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPVAMI 138
Query: 132 RSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLK 191
R ++ R GYT V + CVR++ S+V + L+YL NG+V L F + + + LP+G LK
Sbjct: 139 RPKWKTRGPGYTQYGVSMHCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALK 198
Query: 192 ALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHI 251
ALV +D +IF L KE+ + VS+ ++I++ E +T+ Q L ++
Sbjct: 199 ALVSFSDYQIFQELI------KGKEEDSFFRNSVSQMLRIVMEE----GCSTQKQVLNYL 248
Query: 252 GEHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSD 311
GE F+ + AE + I +HL N +KF +L M +KLF+L + D
Sbjct: 249 GECFRVKLSLPDWYPNEQAAEFLFDQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMED 308
Query: 312 NPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVME 371
NPDSL NQE+L PG L ++LKEK+E WL K + + + NL I +
Sbjct: 309 NPDSLVNQEVLTPGQLFLMFLKEKMESWLVSIKIALDKRSQKTNVSINTENLMKIFSL-- 366
Query: 372 KNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFA 431
+ E +L TG L ++TGL Q +G V A++LNF+R++S FR VHRGA FA
Sbjct: 367 ---GTDLTKPFEYLLATGNLRSKTGLGFLQDSGLCVVADKLNFIRYLSHFRCVHRGADFA 423
Query: 432 GLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTS 491
+RTT+VR+LLPESWGFLCPVHTPDGEPCGL+NH+T+ C V + + S
Sbjct: 424 KMRTTTVRRLLPESWGFLCPVHTPDGEPCGLMNHLTAVCEVVTQF----------VYTAS 473
Query: 492 ILRVLIGVGMIPSLPKLVKSGP----PAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVS 547
+ +L +G+ P V P VLLDG +VG + + LR KV
Sbjct: 474 VPALLCSLGVTP-----VDGAPHRPYAECYPVLLDGVMVGWVDKELAPSIADSLRHFKVL 528
Query: 548 AASVIPDDLEVGYVPLSLGGA-YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQ 606
IP +EV +P++ + YPGL+LFT+P + VRPV+N+ L EE LIG EQ
Sbjct: 529 REKRIPPWMEVALIPMTGKPSLYPGLFLFTTPCRLVRPVQNLELGKEE-----LIGTMEQ 583
Query: 607 VFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQT 666
+FM I + A TH+E+ P +LSV+AN P+SDHNQSPRNMYQCQM KQT
Sbjct: 584 IFMNIAIFED----EVLAGVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQT 639
Query: 667 MGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMED 726
MGF + + R+D KLY LQTPQ+P+VR Y Y +D YP GTNAIVAV++YTGYDMED
Sbjct: 640 MGFPLLTYQARSDNKLYRLQTPQSPLVRPYMYDYYDMDNYPIGTNAIVAVISYTGYDMED 699
Query: 727 AMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPY 786
AMI+NK+S +RG HG +Y++E IDLS+ + D + D + L +D DGLP+
Sbjct: 700 AMIVNKASWERGFAHGSVYKSEFIDLSEKIKQGDDSLVFGVKPGDPRILQK-LDDDGLPF 758
Query: 787 VGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHT 845
+G + G+PY S + T K E+ VD + V ++ + K I R
Sbjct: 759 IGAQLQYGDPYYSYLNLNTGESFVMYYKSKENCIVDNIKVCSNDTGSGKFKCICITMRVP 818
Query: 846 RNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESV 905
RNP IGDKF+SRHGQKG+ S+LWP DMPF+ +GM PD++ NPH FPSRMTI ML+ES+
Sbjct: 819 RNPTIGDKFASRHGQKGILSRLWPAEDMPFTE-SGMVPDILFNPHGFPSRMTIGMLIESM 877
Query: 906 AAK 908
A K
Sbjct: 878 AGK 880
>gi|327302082|ref|XP_003235733.1| DNA-directed RNA polymerase I [Trichophyton rubrum CBS 118892]
gi|326461075|gb|EGD86528.1| DNA-directed RNA polymerase I [Trichophyton rubrum CBS 118892]
Length = 1243
Score = 682 bits (1759), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 384/906 (42%), Positives = 545/906 (60%), Gaps = 73/906 (8%)
Query: 38 CRQAKISYTGKLMADVEFQYLDA-GSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
CR+ +Y GKL A +E++ + VRE GQ P+M+++ RCHL+ A +LV
Sbjct: 127 CRERHATYRGKLRARLEYRINNGEWKESVRE---LGQVPIMIRSNRCHLEKATPSQLVDH 183
Query: 97 KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQ 156
KEE+ E+GGYFI+NG E++ R +I+ K+N+P ++R+SF+ R YT V +R VR DQ
Sbjct: 184 KEESEELGGYFIVNGNEKLIRMLIVGKRNFPTGIIRNSFQKRGSAYTKFGVQLRSVRPDQ 243
Query: 157 SSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKE 216
+S T L+YL +G+V F + EYL+PV ++LKAL++TND EIF L
Sbjct: 244 TSQTNVLHYLNDGNVTFRFSWRKNEYLVPVMMILKALIETNDREIFERLV--------GR 295
Query: 217 KGAVG--SPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETV 274
+G++G + +++RV+++L + +R +C ++G F+ V+ + V
Sbjct: 296 EGSLGIENTFITDRVELLLRTYKAYGAHSRSRCRAYLGSKFRFVLGMPEDTPEEDVGTEF 355
Query: 275 IRDYIFVHLND-------NNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHL 327
+R + HL + +NDKFN+++FM++KL++LV DNPD++ NQE+LL G+L
Sbjct: 356 LRKIVLPHLGNQNVTETQDNDKFNMILFMIRKLYNLVAGDCAPDNPDAVSNQEVLLGGYL 415
Query: 328 ITIYLKEKLEDWLRKGKKLIQD-EIENNGKKFD--FFNLANIKKVMEKNPSKQIGTSIET 384
+ LKE+LE+WL+ +++D + N KF F + K++ + ++ IG ++E
Sbjct: 416 YGMLLKERLEEWLKSVGPMVRDWRMRNQDAKFTDPKFEREFLTKIIGRT-NENIGGAMEY 474
Query: 385 MLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPE 444
L TG L + TGLDLQQ +GYTV AE++NF RFIS FR +HRG+ FA L+TT+VRKLLPE
Sbjct: 475 FLSTGNLVSPTGLDLQQPSGYTVMAEKINFYRFISHFRMIHRGSFFAQLKTTTVRKLLPE 534
Query: 445 SWGFLCPVHTPDGEPCGLLNHMTSTCRVA-SYYDSRGNIRDFSKMRTSILRVLIGVGMIP 503
SWGFLCPVHTPDG PCGLLNH+ C ++ S D G I VL +G+
Sbjct: 535 SWGFLCPVHTPDGSPCGLLNHLAHKCLISTSNLDVSG-----------IPGVLAELGVTS 583
Query: 504 SLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPL 563
++ P V LDG+++G + + LR KV IP +LE+GYVP
Sbjct: 584 ESSCSIEESIP----VQLDGKILGYCTPKQSRTIADTLRYWKVQGHKKIPVELEIGYVPS 639
Query: 564 SLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRN 623
S GG YPG+Y+F+ + RPV+ + L ++ +G FEQ +MEI C RN
Sbjct: 640 SNGGQYPGVYMFSEAARMYRPVKYLPL-----DKLDYVGSFEQPYMEIACVASDI---RN 691
Query: 624 AFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLY 683
+TH E PT +LS++AN+TP+SD NQSPRNMYQCQM KQ MG A+ +R D KLY
Sbjct: 692 GV-STHIEFDPTHILSILANMTPFSDFNQSPRNMYQCQMGKQAMGTPGTAIDYRTDNKLY 750
Query: 684 HLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQ 743
LQT QTP+VR Y YG+D +P G NA+VAV++YTGYDM+DAMI+NKSS +RG +G
Sbjct: 751 RLQTGQTPVVRPPLYNAYGLDNFPNGMNAVVAVISYTGYDMDDAMIINKSSHERGFGYGT 810
Query: 744 IYQTETIDLSDDGNKVDRGQ------KLFRRNKDA---KSLHSVIDSDGLPYVGQMIHPG 794
IY+T+ L DD RG+ KLF + +D DGLP++G + G
Sbjct: 811 IYKTKIYAL-DDKESRGRGKSKRAITKLFGFAPGGLVKAEWKAQLDEDGLPHIGAKVSEG 869
Query: 795 E----PYCSIYDKTTNSWRTNSR-------KGSESVFVDYVAVDMKNSKN-LPQKANIRF 842
+ YD T+++ + K E F+D V V + N + Q +I++
Sbjct: 870 SLVGAWHTVQYDPATDTYINVDKQTHFLKYKDGEEGFIDSVRVLGSETGNEVCQAVSIKY 929
Query: 843 RHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLL 902
R R P+IGDKFSSRHGQKGV SQLWP DMPFS +G++PD+IINPHAFPSRMTI M +
Sbjct: 930 RVPRRPVIGDKFSSRHGQKGVLSQLWPATDMPFS-ESGIQPDVIINPHAFPSRMTIGMFV 988
Query: 903 ESVAAK 908
ES+A K
Sbjct: 989 ESLAGK 994
>gi|432103058|gb|ELK30392.1| DNA-directed RNA polymerase I subunit RPA2 [Myotis davidii]
Length = 1137
Score = 681 bits (1758), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 384/947 (40%), Positives = 531/947 (56%), Gaps = 93/947 (9%)
Query: 12 LRELVRHHIESFDYMLDEGLSEMFD----------------------------------- 36
L+EL + H+ESF+Y + EGLS
Sbjct: 35 LQELTQAHVESFNYAVREGLSHAVGRRAIPPFEFAFKDERISLTIVDAVISPPTVPKGSI 94
Query: 37 ---------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQG 87
CR + +Y GKL AD+ + +++ G P+M+K++ C+L
Sbjct: 95 CKELNVYPAECRGRRSTYRGKLTADISWAVNGISKGTIKQFL--GYVPIMVKSKLCNLYN 152
Query: 88 ADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAV 147
+ L+ EE EMGGYFI+NG+E+V R +I+P++N+P++M+R ++ R GYT V
Sbjct: 153 LPPKALIEHHEEPEEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWKARGPGYTQYGV 212
Query: 148 VIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTC 207
+ CVR++ S+V + L+YL NG+V L F Q + + LP+G LKALV +D +IF L
Sbjct: 213 SMHCVREEHSAVNMNLHYLENGTVMLNFIYQKELFFLPLGFALKALVSFSDYQIFQELI- 271
Query: 208 CYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESY 267
KG + + V +L V + +T+ Q L ++GE F+ + S
Sbjct: 272 ---------KGKEDNSFLRNSVTQMLRMVMEEGCSTQKQVLNYLGERFRVKLSLPDWYSN 322
Query: 268 YAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHL 327
AE + I +HL N +KF +L M +KLF+L + +NPDSL NQE+L PG L
Sbjct: 323 EQAAEFLFNQCICIHLKSNTEKFYVLCLMTRKLFALAKGECMEENPDSLVNQEVLTPGQL 382
Query: 328 ITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLK 387
++LKEK+E WL K + + + + NL I + + E +L
Sbjct: 383 FLMFLKEKMEAWLVSVKIGMDKKAQKTNMSINSENLMKILSL-----GIDLTKPFEYLLA 437
Query: 388 TGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWG 447
TG L ++TGL Q +G V A++LNF+R++S FR VHRGA FA +RTT+VR+LLPESWG
Sbjct: 438 TGNLRSKTGLGFLQNSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVRRLLPESWG 497
Query: 448 FLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPK 507
FLCPVHTPDGEPCGL+NH+T+ C V + + SI +L +G+ P
Sbjct: 498 FLCPVHTPDGEPCGLMNHLTAICEVVTQF----------VYTASIPALLCNLGVTP---- 543
Query: 508 LVKSGP----PAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPL 563
V P VLLDG +VG + V A LR KV IP +EV VP+
Sbjct: 544 -VDGTPHRPYAECYPVLLDGVMVGWVDKELAAGVAASLRHFKVLREKRIPPWMEVALVPM 602
Query: 564 SLGGA-YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRR 622
+ + YPGLYLFT+P + VRPVRN+ L EE LIG EQ+FM I +
Sbjct: 603 TGKPSLYPGLYLFTTPCRLVRPVRNLELGKEE-----LIGTMEQLFMNIAIFED----EV 653
Query: 623 NAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKL 682
A TH+E+ P +LSV+AN P+SDHNQSPRNMYQCQM KQTMGF + + R+D KL
Sbjct: 654 FAGLTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKL 713
Query: 683 YHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHG 742
Y LQTPQ+P+VR Y Y +D YP GTNAIVAV++YTGYDMEDAMI+NK+S +RG HG
Sbjct: 714 YRLQTPQSPLVRPCMYDHYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHG 773
Query: 743 QIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYD 802
+Y++E IDLS+ + D + D +++ +D DGLP++G + G+PY S +
Sbjct: 774 SVYKSEFIDLSEKIKQGDDSLVFGVKPGDPRTVQK-LDEDGLPFIGAQLQYGDPYYSYVN 832
Query: 803 KTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHTRNPIIGDKFSSRHGQK 861
T K E+ VD + V +S + K I R RNP IGDKF+SRHGQK
Sbjct: 833 LNTGESSVMFYKSKENCIVDNIKVCSNDSGSGKFKCVCITMRIPRNPTIGDKFASRHGQK 892
Query: 862 GVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
G+ S+LWP DMPF+ +GM PD++ NPH FPSRMTI ML+ES+A K
Sbjct: 893 GILSRLWPTEDMPFTE-SGMVPDILFNPHGFPSRMTIGMLIESMAGK 938
>gi|426223597|ref|XP_004005961.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 1
[Ovis aries]
Length = 1135
Score = 681 bits (1757), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 386/945 (40%), Positives = 534/945 (56%), Gaps = 91/945 (9%)
Query: 12 LRELVRHHIESFDYMLDEGLSEMFD----------------------------------- 36
L+EL R H+ESF+Y + EGLS
Sbjct: 35 LQELTRAHVESFNYAVSEGLSHAVQAVPPFEFAFKDERISLTIVDAVISPPAVPKGSICK 94
Query: 37 -------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGAD 89
CR + +Y GKL AD+ + V+++ G P+M+K++ C+L
Sbjct: 95 ELNVYPAECRGRRSTYRGKLTADISWSVNGISKGVIKQFL--GYVPIMVKSKLCNLYSLP 152
Query: 90 SQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVI 149
+ L+ EEA EMGGYFI+NG+E+V R +I+P++N+P++MVR ++ R GYT V +
Sbjct: 153 PKALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMVRPKWKSRGPGYTQYGVSM 212
Query: 150 RCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY 209
CVR++ S+V + L+YL NG+V L F + + + LP+G LKALV +D +IF L
Sbjct: 213 HCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELI--- 269
Query: 210 DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYA 269
KE + VS+ ++I++ E +T+ Q L ++GE F+ ++
Sbjct: 270 ---KGKEDDSFFRNSVSQMLRIVMEE----GCSTQKQVLNYLGERFRVKLNLPDWYPNEQ 322
Query: 270 VAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
AE + I +HL N +KF +L M +KLF+L + +NPDSL NQE+L PG L
Sbjct: 323 AAEFLFNQCICIHLKSNTEKFYVLCLMTRKLFALAKGECMEENPDSLMNQEVLTPGQLFL 382
Query: 330 IYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTG 389
++LKEKLE WL K I + + + NL I + + E +L TG
Sbjct: 383 MFLKEKLEAWLVSIKIAIDKKSQKTNVSLNSENLMKIFSL-----GIDLTKPFEYLLATG 437
Query: 390 RLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFL 449
L ++TGL Q +G V A++LNF+R++S FR VHRGA FA +RTT+VR+LLPESWGFL
Sbjct: 438 NLRSKTGLGFLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVRRLLPESWGFL 497
Query: 450 CPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLV 509
CPVHTPDGEPCGL+NH+T+ C V + S SI +L +G+ P V
Sbjct: 498 CPVHTPDGEPCGLMNHLTAICEVVTQ----------SVYTASIPALLCSLGVTP-----V 542
Query: 510 KSGPPAVLS----VLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSL 565
P S VLLDG ++G + LR KV IP +EV +P++
Sbjct: 543 DGTPHRPYSECYPVLLDGVMIGWADKEIAPGIADSLRHFKVLREKRIPPWMEVVLIPMTG 602
Query: 566 GGA-YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNA 624
+ YPGLYLFT+P + VRPV+N+ L EE LIG EQ+FM + + A
Sbjct: 603 KPSLYPGLYLFTTPCRLVRPVQNLELGKEE-----LIGTMEQIFMNVAIFED----EVLA 653
Query: 625 FPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYH 684
TH+E+ P MLSV+AN P+SDHNQSPRNMYQCQM KQTMGF + + R+D KLY
Sbjct: 654 GVTTHQELFPHSMLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTFQDRSDNKLYR 713
Query: 685 LQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQI 744
LQTPQ+P+VR Y Y +D YP GTNAIVAV++YTGYDMEDAMI+NK+S +RG HG +
Sbjct: 714 LQTPQSPLVRPYMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSV 773
Query: 745 YQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKT 804
Y++E IDLS+ + D + D + + +D DGLP++G + G+PY S +
Sbjct: 774 YKSEFIDLSEKIKQGDDSLVFGVKAGDPRVMQK-LDDDGLPFIGAQLKYGDPYYSYLNLN 832
Query: 805 TNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHTRNPIIGDKFSSRHGQKGV 863
T K E+ VD + V ++ N K I R RNP IGDKF+SRHGQKG+
Sbjct: 833 TGEGFVMYYKSKENCIVDNIKVCSNDTGNGKFKCVCITMRVPRNPTIGDKFASRHGQKGI 892
Query: 864 CSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
S+LWP DMPF+ +GM PD++ NPH FPSRMTI ML+ES+A K
Sbjct: 893 LSRLWPVEDMPFTE-SGMVPDILFNPHGFPSRMTIGMLIESMAGK 936
>gi|403303871|ref|XP_003942542.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 1
[Saimiri boliviensis boliviensis]
Length = 1135
Score = 681 bits (1757), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 384/945 (40%), Positives = 540/945 (57%), Gaps = 91/945 (9%)
Query: 12 LRELVRHHIESFDYMLDEGLS--------------------EMFD--------------- 36
L+EL R H+ESF+Y + EGL + D
Sbjct: 35 LQELTRAHVESFNYAVHEGLGLAVQAIPPFEFAFKDQRISFTILDAVISPPTVPKGTICK 94
Query: 37 -------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGAD 89
CR + +Y GKL AD+ + ++++ + G P+M+K++ C+L
Sbjct: 95 EASVYPAECRGRRSTYRGKLTADINWAVNGISKGIIKQ--SLGYVPIMVKSKLCNLYNLP 152
Query: 90 SQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVI 149
Q L+ EEA EMGGYFI+NG+E+V R +I+P++N+P++M+R ++ R GYT V +
Sbjct: 153 PQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWKTRGPGYTQYGVSM 212
Query: 150 RCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY 209
CVR++ S+V + L+YL NG+V L F + + + LP+G LKALV +D +IF L
Sbjct: 213 HCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELI--- 269
Query: 210 DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYA 269
KE + VS+ ++I++ E +T+ Q L ++GE F+ ++
Sbjct: 270 ---KGKEDDSFFRNSVSQMLRIVMEE----GCSTQKQVLNYLGECFRVKLNVPDWYPNEQ 322
Query: 270 VAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
AE ++ I +HL N +KF +L M +KLF+L + DNPDSL NQE+L PG L
Sbjct: 323 AAEFLLNQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMEDNPDSLVNQEVLTPGQLFL 382
Query: 330 IYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTG 389
++LKEKLE WL K + + + NL I + + E +L TG
Sbjct: 383 MFLKEKLEGWLVSIKIAFDKKAQKTNVSMNTDNLMKIFTM-----GLDLTKPFEYLLATG 437
Query: 390 RLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFL 449
L ++TGL L Q +G V A++LNF+R++S FR VHRG+ FA +RTT+VR+LLPESWGFL
Sbjct: 438 NLRSKTGLGLLQESGLCVVADKLNFIRYLSHFRCVHRGSDFAKMRTTTVRRLLPESWGFL 497
Query: 450 CPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLV 509
CPVHTPDGEPCGL+NH+T+ C V + + TSI +L +G+ P V
Sbjct: 498 CPVHTPDGEPCGLMNHLTAVCEVVTQF----------VYTTSIPALLCNLGVTP-----V 542
Query: 510 KSGPPAVLS----VLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSL 565
P S VLLDG +VG + + LR KV IP +EV +P++
Sbjct: 543 DGAPHRPYSECYPVLLDGVMVGWVDKELASGIADSLRHFKVLREKRIPPWMEVVLIPMTG 602
Query: 566 GGA-YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNA 624
+ YPGL+LFT+P + VRPV+N+ L EE LIG EQ+FM + + A
Sbjct: 603 KPSLYPGLFLFTTPCRLVRPVQNLELGKEE-----LIGTMEQIFMNVAIYED----EVFA 653
Query: 625 FPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYH 684
TH+E+ P +LSV+AN P+SDHNQSPRNMYQCQM KQTMGF + + R+D KLY
Sbjct: 654 GVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYR 713
Query: 685 LQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQI 744
LQTPQ+P+VR + Y Y +D YP GTNAIVAV++YTGYDMEDAMI+NK+S +RG HG +
Sbjct: 714 LQTPQSPLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSV 773
Query: 745 YQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKT 804
Y++E IDLS+ + D + D + L +D DGLP++G + G+PY S +
Sbjct: 774 YKSEFIDLSEKIKQGDSSLVFGIKLGDPRVLQK-LDDDGLPFIGAKLQYGDPYYSYLNLN 832
Query: 805 TNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHTRNPIIGDKFSSRHGQKGV 863
T K E+ VD + V ++ + K I R RNP IGDKF+SRHGQKG+
Sbjct: 833 TGESFVMYYKSKENCVVDNIKVCSNDTGSGKFKCVCITMRVPRNPTIGDKFASRHGQKGI 892
Query: 864 CSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
S+LWP DMPF+ +GM PD++ NPH FPSRMTI ML+ES+A K
Sbjct: 893 LSRLWPVEDMPFTE-SGMVPDILFNPHGFPSRMTIGMLIESMAGK 936
>gi|359321637|ref|XP_003639648.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2-like isoform
1 [Canis lupus familiaris]
Length = 1135
Score = 680 bits (1755), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/946 (40%), Positives = 537/946 (56%), Gaps = 93/946 (9%)
Query: 12 LRELVRHHIESFDYMLDEGLSEMFD----------------------------------- 36
L+EL R H+ESF+Y + EGLS
Sbjct: 35 LQELTRAHVESFNYAVREGLSHAVQAIPPFEFAFKDERISLTIVDAVISPPMVPKGNICK 94
Query: 37 -------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGAD 89
CR + +Y GKL AD+ + ++++ G P+M+K++ C+L
Sbjct: 95 ELNIYPAECRGRRSTYRGKLTADISWAVNGISKGIIKQFL--GYIPIMVKSKLCNLHSLP 152
Query: 90 SQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVI 149
+ L+ EE EMGGYFI+NG+E+V R +I+P++N+P++M+R ++ R GYT V +
Sbjct: 153 PKALIEHHEEVEEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWKTRGPGYTQYGVSM 212
Query: 150 RCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY 209
CVR++ S+V + L+YL NG+V L F + + + LP+G LKALV +D +IF L
Sbjct: 213 HCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELI--- 269
Query: 210 DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYA 269
KE+ + VS+ ++I++ E +T+ Q L ++GE F+ +
Sbjct: 270 ---KGKEEDSFFRNSVSQMLRIVMEE----GCSTQKQVLNYLGERFRVKLSLPDWYPNEQ 322
Query: 270 VAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
AE + I +HL N +KF +L M +KLF+L + DNPDSL NQE+L PG L
Sbjct: 323 AAEFLFNQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMEDNPDSLVNQEVLTPGQLFL 382
Query: 330 IYLKEKLEDWLRKGKKLIQDEIENNGKKFDF-FNLANIKKVMEKNPSKQIGTSIETMLKT 388
++LKEK+E WL I+ ++ +K + N N+ ++ N + E +L T
Sbjct: 383 MFLKEKMESWLVS----IKIALDKRSQKTNVSINTENLMRIF--NLGTDLTKPFEYLLAT 436
Query: 389 GRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGF 448
G L ++TGL Q +G V A++LNF+R++S FR VHRGA FA +RTT+VR+LLPESWGF
Sbjct: 437 GNLRSKTGLGFLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVRRLLPESWGF 496
Query: 449 LCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKL 508
LCPVHTPDGEPCGL+NH+T+ C V + S+ +L +G+ P
Sbjct: 497 LCPVHTPDGEPCGLMNHLTAVCEVVTQ----------CVYTASVPTLLCSLGVTP----- 541
Query: 509 VKSGPPAVLS----VLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLS 564
V P S VLLDG +VG + + LR KV IP +EV +P++
Sbjct: 542 VDGAPHRPYSECYPVLLDGVMVGWVDKELAPSIAESLRHFKVLKEKRIPPWMEVALIPMT 601
Query: 565 LGGA-YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRN 623
+ YPGL+LFT+P + VRPV+N+ L EE LIG EQ+FM I +
Sbjct: 602 GKPSLYPGLFLFTTPCRLVRPVQNLELGKEE-----LIGTMEQIFMNIAIFED----EVL 652
Query: 624 AFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLY 683
A TH+E+ P +LSV+AN P+SDHNQSPRNMYQCQM KQTMGF + + R+D KLY
Sbjct: 653 AGVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQARSDNKLY 712
Query: 684 HLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQ 743
LQTPQ+P+VR Y Y +D YP GTNAIVAV++YTGYDMEDAMI+NK+S +RG HG
Sbjct: 713 RLQTPQSPLVRPYMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGS 772
Query: 744 IYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDK 803
+Y++E IDLS+ + D + D + L +D DGLP++G + G+PY S +
Sbjct: 773 VYKSEFIDLSEKIKQGDDSLVFGVKPGDPRILQK-LDDDGLPFIGARLQYGDPYYSYLNL 831
Query: 804 TTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHTRNPIIGDKFSSRHGQKG 862
T K E+ VD + V ++ N K I R RNP IGDKF+SRHGQKG
Sbjct: 832 NTGESFVTYYKSKENCIVDNIKVCSNDTGNGRFKCVCITMRVPRNPTIGDKFASRHGQKG 891
Query: 863 VCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
+ S+LWP DMPF+ +GM PD++ NPH FPSRMTI ML+ES+A K
Sbjct: 892 ILSRLWPVEDMPFTE-SGMVPDILFNPHGFPSRMTIGMLIESMAGK 936
>gi|326481496|gb|EGE05506.1| DNA-directed RNA polymerase I subunit beta rpa2 [Trichophyton
equinum CBS 127.97]
Length = 1090
Score = 680 bits (1754), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/900 (42%), Positives = 543/900 (60%), Gaps = 73/900 (8%)
Query: 37 HCRQAKISYTGKLMADVEFQYLDA-GSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVS 95
CR+ +Y GKL A +E++ + VRE GQ P+M+++ RCHL+ A +LV
Sbjct: 127 ECRERHATYRGKLRARLEYRVNNGEWKESVRE---LGQVPIMIRSNRCHLEKATPSQLVD 183
Query: 96 LKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKD 155
KEE+ E+GGYFI+NG E++ R +I+ K+N+P +++R+SF+ R YT V +R VR D
Sbjct: 184 HKEESEELGGYFIVNGNEKLIRMLIVGKRNFPTAIIRNSFQKRGSAYTKFGVQLRSVRPD 243
Query: 156 QSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKK 215
Q+S T L+YL +G+V F + EYL+PV ++LKAL++TND EIF L
Sbjct: 244 QTSQTNVLHYLNDGNVTFRFSWRKNEYLVPVMMILKALIETNDREIFERLV--------G 295
Query: 216 EKGAVG--SPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAET 273
+G++G + V++RV+++L + + +R +C H+G F+ V+ + V
Sbjct: 296 REGSLGIENTFVTDRVELLLRTYKAYGVHSRSKCRAHLGSKFRFVLGMPEDIPEEDVGTE 355
Query: 274 VIRDYIFVHLND-------NNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGH 326
+R + HL + +NDKFN+++FM++KL++LV DNPD++ NQE+LL G+
Sbjct: 356 FLRKIVLPHLGNQNVTETQDNDKFNMILFMIRKLYNLVAGDCAPDNPDAVSNQEVLLGGY 415
Query: 327 LITIYLKEKLEDWLRKGKKLIQD-EIENNGKKFD--FFNLANIKKVMEKNPSKQIGTSIE 383
L + LKE+LE+WL+ +++D + N KF F + +++ + ++ IG ++E
Sbjct: 416 LYGMLLKERLEEWLKSVGPMVRDWRMRNQDAKFTDPKFEREFLTRIIGRT-NENIGGAME 474
Query: 384 TMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLP 443
L TG L + TGLDLQQ +GYTV AE++NF RFIS FR +HRG+ FA L+TT+VRKLLP
Sbjct: 475 YFLSTGNLVSPTGLDLQQPSGYTVMAEKINFYRFISHFRMIHRGSFFAQLKTTTVRKLLP 534
Query: 444 ESWGFLCPVHTPDGEPCGLLNHMTSTCRVA-SYYDSRGNIRDFSKMRTSILRVLIGVGMI 502
ESWGFLCPVHTPDG PCGLLNH+ C ++ S D G I VL G+G+
Sbjct: 535 ESWGFLCPVHTPDGSPCGLLNHLAHKCLISTSNLDVSG-----------IPGVLAGLGVT 583
Query: 503 PSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVP 562
++ P V LDG+++G + + LR KV IP +LE+GYVP
Sbjct: 584 SESSCSIEESIP----VQLDGKILGYCTPKQSRAIADTLRYWKVQGHKQIPVELEIGYVP 639
Query: 563 LSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRR 622
S GG YPG+Y+F+ + RPV+ + L ++ +GPFEQ +MEI C R
Sbjct: 640 CSNGGQYPGVYMFSEAARMYRPVKYLPL-----DKLDYVGPFEQPYMEIACVASDI---R 691
Query: 623 NAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKL 682
N +TH E PT +LS++AN+TP+SD NQSPRNMYQCQM KQ MG A+ +R D KL
Sbjct: 692 NGV-STHIEFDPTHILSILANMTPFSDFNQSPRNMYQCQMGKQAMGTPGTAIDYRTDNKL 750
Query: 683 YHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHG 742
Y LQT QTP+VR Y YG+D +P G NA+VAV++YTGYDM+DAMI+NKSS +RG +G
Sbjct: 751 YRLQTGQTPVVRPPLYNAYGLDNFPNGMNAVVAVISYTGYDMDDAMIINKSSHERGFGYG 810
Query: 743 QIYQTETIDLSDDGNKVDRGQ------KLFRRNKDA---KSLHSVIDSDGLPYVGQMIHP 793
IY+T+ L DD RG+ KLF + +D DGLP++G +
Sbjct: 811 TIYKTKIYAL-DDKESRGRGKSKRAITKLFGFAPGGLVKAEWKAQLDEDGLPHIGAKVSE 869
Query: 794 GE----PYCSIYDKTTNSWRTNSR-------KGSESVFVDYVAVDMKNSKN-LPQKANIR 841
G + YD T+++ + K E F+D V V + N + Q +I+
Sbjct: 870 GSLVGAWHTVQYDPATDTYINVDKQTHFLKYKDGEEGFIDSVRVLGSETGNEVCQAVSIK 929
Query: 842 FRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAML 901
+R R P+IGDKFSSRHGQKGV SQLWP DMPFS +G++PD+IINPHAFPSRMTI +
Sbjct: 930 YRVPRRPVIGDKFSSRHGQKGVLSQLWPATDMPFS-ESGIQPDVIINPHAFPSRMTIVAV 988
>gi|224967092|ref|NP_033112.2| DNA-directed RNA polymerase I subunit RPA2 [Mus musculus]
gi|341941989|sp|P70700.2|RPA2_MOUSE RecName: Full=DNA-directed RNA polymerase I subunit RPA2; Short=RNA
polymerase I subunit 2; AltName: Full=DNA-directed RNA
polymerase I 135 kDa polypeptide; Short=RPA135
gi|74137985|dbj|BAE25401.1| unnamed protein product [Mus musculus]
gi|74194733|dbj|BAE25971.1| unnamed protein product [Mus musculus]
gi|148696280|gb|EDL28227.1| RNA polymerase 1-2 [Mus musculus]
Length = 1135
Score = 680 bits (1754), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 387/948 (40%), Positives = 544/948 (57%), Gaps = 97/948 (10%)
Query: 12 LRELVRHHIESFDYMLDEGLSEMFD----------------------------------- 36
L++L R H++SF+Y EGLS
Sbjct: 35 LQDLTRAHVDSFNYAALEGLSHAVQAIPPFEFAFKDERISLTIVDAVISPPSVPKGTICK 94
Query: 37 -------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGAD 89
CR K +Y G+L AD+ + ++++ G P+M+K++ C+L
Sbjct: 95 DLNVYPAECRGRKSTYRGRLTADISWAVNGVPKGIIKQFL--GYVPIMVKSKLCNLYNLP 152
Query: 90 SQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVI 149
+ L+ EEA EMGGYFI+NG+E+V R +I+P++N+P++MVR ++ R GYT V +
Sbjct: 153 PRVLIEHHEEAEEMGGYFIINGIEKVIRMLIVPRRNFPIAMVRPKWKSRGLGYTQFGVSM 212
Query: 150 RCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY 209
RCVR++ S+V + L+Y+ NG+V L F + + + LP+G LKALV +D +IF L
Sbjct: 213 RCVREEHSAVNMNLHYVENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELI--- 269
Query: 210 DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYA 269
KE+ + VS+ ++I++ E ++ Q L ++GE F+ +
Sbjct: 270 ---KGKEEDSFFRNSVSQMLRIVIEE----GCHSQKQVLNYLGECFRVKLSLPDWYPNVE 322
Query: 270 VAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
AE ++ I +HL N DKF LL M +KLF+L + DNPDSL NQE+L PG L
Sbjct: 323 AAEFLLNQCICIHLQSNTDKFYLLCLMTRKLFALARGECMDDNPDSLVNQEVLSPGQLFL 382
Query: 330 IYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTG 389
++LKEK+E+WL K ++ + + NL I + ++ E +L TG
Sbjct: 383 MFLKEKMENWLVSIKIVLDKRAQKANVSINNENLMKIFSM-----GTELTRPFEYLLATG 437
Query: 390 RLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFL 449
L ++TGL Q +G V A++LNFLR++S FR VHRGA+FA +RTT+VR+LLPESWGFL
Sbjct: 438 NLRSKTGLGFLQDSGLCVVADKLNFLRYLSHFRCVHRGAAFAKMRTTTVRRLLPESWGFL 497
Query: 450 CPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLV 509
CPVHTPDG PCGLLNH+T+ C V + + SI +L G+G+ P V
Sbjct: 498 CPVHTPDGAPCGLLNHLTAVCEVVTKF----------VYTASIPALLCGLGVTP-----V 542
Query: 510 KSGPPAVLS----VLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSL 565
+ P S VLLDG +VG + +V LRR KV IP +EV +P++
Sbjct: 543 DTAPCRPYSDCYPVLLDGVMVGWVDKDLAPEVADTLRRFKVLREKRIPPWMEVALIPMTG 602
Query: 566 GGA-YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRN 623
+ YPGL+LFT+P + VRPV+N+ L EE LIG EQ+FM + D GG
Sbjct: 603 KPSLYPGLFLFTTPCRLVRPVQNLELGREE-----LIGTMEQLFMNVAIFEDEVFGGI-- 655
Query: 624 AFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLY 683
+TH+E+ P +LSV+AN P+SDHNQSPRNMYQCQM KQTMGF + + R+D KLY
Sbjct: 656 ---STHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQNRSDNKLY 712
Query: 684 HLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQ 743
LQTPQ+P+VR Y Y +D YP GTNAIVAV++YTGYDMEDAMI+NK+S +RG HG
Sbjct: 713 RLQTPQSPLVRPCMYDFYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGS 772
Query: 744 IYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDK 803
+Y++E IDLS+ + + + D + + +D DGLP++G + G+PY S +
Sbjct: 773 VYKSEFIDLSEKFKQGEDNLVFGVKPGDPRVMQK-LDDDGLPFIGAKLEYGDPYYSYLNL 831
Query: 804 TTNSWRTNSRKGSESVFVDYVAV---DMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQ 860
T K E+ VD + V DM + K + I R RNP IGDKF+SRHGQ
Sbjct: 832 NTGEGFVVYYKSKENCVVDNIKVCSNDMGSGKF--KCICITVRIPRNPTIGDKFASRHGQ 889
Query: 861 KGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
KG+ S+LWP DMPF+ +GM PD++ NPH FPSRMTI ML+ES+A K
Sbjct: 890 KGILSRLWPAEDMPFTE-SGMMPDILFNPHGFPSRMTIGMLIESMAGK 936
>gi|332257256|ref|XP_003277725.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 1
[Nomascus leucogenys]
Length = 1135
Score = 680 bits (1754), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 383/945 (40%), Positives = 537/945 (56%), Gaps = 91/945 (9%)
Query: 12 LRELVRHHIESFDYMLDEGLS--------------------EMFD--------------- 36
L+EL R H+ESF+Y + EGL + D
Sbjct: 35 LQELTRAHVESFNYAVHEGLGLAVQAIPPFEFTFKDERISFTILDAVISPPTVPKGTICK 94
Query: 37 -------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGAD 89
CR + +Y GKL AD+ + ++++ G P+M+K++ C+L
Sbjct: 95 EVNIYPAECRGRRSTYRGKLTADINWAVNGISKGIIKQFL--GYVPIMVKSKLCNLHNLP 152
Query: 90 SQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVI 149
Q L+ EEA EMGGYFI+NG+E+V R +I+P++N+P++M+R ++ R GYT V +
Sbjct: 153 PQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWKTRGPGYTQYGVSV 212
Query: 150 RCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY 209
CVR++ S+V + L+YL NG+V L F + + + LP+G LKALV +D +IF L
Sbjct: 213 HCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELI--- 269
Query: 210 DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYA 269
KE + VS+ ++I++ E +T+ Q L ++GE F+ ++
Sbjct: 270 ---KGKEDDSFLRNSVSQMLRIVMEE----GCSTQKQVLNYLGECFRVKLNVPDWYPNEQ 322
Query: 270 VAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
AE + I +HL N +KF +L M +KLF+L + DNPDSL NQE+L PG L
Sbjct: 323 AAEFLFNQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMEDNPDSLVNQEVLTPGQLFL 382
Query: 330 IYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTG 389
++LKEKLE WL K + + + NL I + + E + TG
Sbjct: 383 MFLKEKLEGWLVSIKIAFDKKAQKTNVSMNTDNLMRIFTM-----GIDLTKPFEYLFATG 437
Query: 390 RLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFL 449
L ++TGL L Q +G V A++LNF+R++S FR VHRGA FA +RTT+VR+LLPESWGFL
Sbjct: 438 NLRSKTGLGLLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVRRLLPESWGFL 497
Query: 450 CPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLV 509
CPVHTPDGEPCGL+NH+T+ C V + + SI +L +G+ P V
Sbjct: 498 CPVHTPDGEPCGLMNHLTAVCEVVTQF----------VYTASIPALLCNLGVTP-----V 542
Query: 510 KSGPPAVLS----VLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSL 565
P S VLLDG +VG + + LRR KV IP +EV +P++
Sbjct: 543 DGAPHRPYSECYPVLLDGVMVGWVDKEIAPGIADSLRRFKVLREKRIPPWMEVVLIPMTG 602
Query: 566 GGA-YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNA 624
+ YPGL+LFT+P + VRPV+N+ + EE LIG EQ+FM + + A
Sbjct: 603 KPSLYPGLFLFTTPCRLVRPVQNLEMGKEE-----LIGTMEQIFMNVAIFED----EVFA 653
Query: 625 FPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYH 684
TH+E+ P +LSV+AN P+SDHNQSPRNMYQCQM KQTMGF + + R+D KLY
Sbjct: 654 GVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYR 713
Query: 685 LQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQI 744
LQTPQ+P+VR + Y Y +D YP GTNAIVAV++YTGYDMEDAMI+NK+S +RG HG +
Sbjct: 714 LQTPQSPLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSV 773
Query: 745 YQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKT 804
Y++E IDLS+ + D + D + L +D DGLP++G + G+PY S +
Sbjct: 774 YKSEFIDLSEKIKQGDSSLVFGIKPGDPRVLQK-LDDDGLPFIGAKLQYGDPYYSYLNLN 832
Query: 805 TNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHTRNPIIGDKFSSRHGQKGV 863
T K E+ VD + V ++ + K I R RNP IGDKF+SRHGQKG+
Sbjct: 833 TGESFVMYYKSKENCVVDNIKVCSNDTGSGKFKCVCITMRVPRNPTIGDKFASRHGQKGI 892
Query: 864 CSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
S+LWP DMPF+ +GM PD++ NPH FPSRMTI ML+ES+A K
Sbjct: 893 LSRLWPAEDMPFTE-SGMVPDILFNPHGFPSRMTIGMLIESMAGK 936
>gi|403303873|ref|XP_003942543.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 2
[Saimiri boliviensis boliviensis]
Length = 1079
Score = 680 bits (1754), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 377/903 (41%), Positives = 531/903 (58%), Gaps = 63/903 (6%)
Query: 12 LRELVRHHIESFDYMLDEGLSEMFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNF 71
L+EL R H+ESF+Y + EGL + AD+ + ++++ +
Sbjct: 35 LQELTRAHVESFNYAVHEGLGL--------------AVQADINWAVNGISKGIIKQ--SL 78
Query: 72 GQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMV 131
G P+M+K++ C+L Q L+ EEA EMGGYFI+NG+E+V R +I+P++N+P++M+
Sbjct: 79 GYVPIMVKSKLCNLYNLPPQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMI 138
Query: 132 RSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLK 191
R ++ R GYT V + CVR++ S+V + L+YL NG+V L F + + + LP+G LK
Sbjct: 139 RPKWKTRGPGYTQYGVSMHCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALK 198
Query: 192 ALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHI 251
ALV +D +IF L KE + VS+ ++I++ E +T+ Q L ++
Sbjct: 199 ALVSFSDYQIFQELI------KGKEDDSFFRNSVSQMLRIVMEE----GCSTQKQVLNYL 248
Query: 252 GEHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSD 311
GE F+ ++ AE ++ I +HL N +KF +L M +KLF+L + D
Sbjct: 249 GECFRVKLNVPDWYPNEQAAEFLLNQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMED 308
Query: 312 NPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVME 371
NPDSL NQE+L PG L ++LKEKLE WL K + + + NL I +
Sbjct: 309 NPDSLVNQEVLTPGQLFLMFLKEKLEGWLVSIKIAFDKKAQKTNVSMNTDNLMKIFTM-- 366
Query: 372 KNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFA 431
+ E +L TG L ++TGL L Q +G V A++LNF+R++S FR VHRG+ FA
Sbjct: 367 ---GLDLTKPFEYLLATGNLRSKTGLGLLQESGLCVVADKLNFIRYLSHFRCVHRGSDFA 423
Query: 432 GLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTS 491
+RTT+VR+LLPESWGFLCPVHTPDGEPCGL+NH+T+ C V + + TS
Sbjct: 424 KMRTTTVRRLLPESWGFLCPVHTPDGEPCGLMNHLTAVCEVVTQF----------VYTTS 473
Query: 492 ILRVLIGVGMIPSLPKLVKSGPPAVLS----VLLDGRVVGVIPSSEIEKVVAHLRRLKVS 547
I +L +G+ P V P S VLLDG +VG + + LR KV
Sbjct: 474 IPALLCNLGVTP-----VDGAPHRPYSECYPVLLDGVMVGWVDKELASGIADSLRHFKVL 528
Query: 548 AASVIPDDLEVGYVPLSLGGA-YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQ 606
IP +EV +P++ + YPGL+LFT+P + VRPV+N+ L EE LIG EQ
Sbjct: 529 REKRIPPWMEVVLIPMTGKPSLYPGLFLFTTPCRLVRPVQNLELGKEE-----LIGTMEQ 583
Query: 607 VFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQT 666
+FM + + A TH+E+ P +LSV+AN P+SDHNQSPRNMYQCQM KQT
Sbjct: 584 IFMNVAIYED----EVFAGVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQT 639
Query: 667 MGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMED 726
MGF + + R+D KLY LQTPQ+P+VR + Y Y +D YP GTNAIVAV++YTGYDMED
Sbjct: 640 MGFPLLTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMED 699
Query: 727 AMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPY 786
AMI+NK+S +RG HG +Y++E IDLS+ + D + D + L +D DGLP+
Sbjct: 700 AMIVNKASWERGFAHGSVYKSEFIDLSEKIKQGDSSLVFGIKLGDPRVLQK-LDDDGLPF 758
Query: 787 VGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHT 845
+G + G+PY S + T K E+ VD + V ++ + K I R
Sbjct: 759 IGAKLQYGDPYYSYLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGKFKCVCITMRVP 818
Query: 846 RNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESV 905
RNP IGDKF+SRHGQKG+ S+LWP DMPF+ +GM PD++ NPH FPSRMTI ML+ES+
Sbjct: 819 RNPTIGDKFASRHGQKGILSRLWPVEDMPFTE-SGMVPDILFNPHGFPSRMTIGMLIESM 877
Query: 906 AAK 908
A K
Sbjct: 878 AGK 880
>gi|225681121|gb|EEH19405.1| DNA-directed RNA polymerase I polypeptide 2 [Paracoccidioides
brasiliensis Pb03]
Length = 1242
Score = 679 bits (1753), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 383/905 (42%), Positives = 546/905 (60%), Gaps = 71/905 (7%)
Query: 38 CRQAKISYTGKLMADVEFQYLDA-GSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
CR+ +Y G+L A +E++ + VRE GQ P+ML++ RC+L+ ++LV
Sbjct: 127 CRERHATYRGRLRARLEYRINNGEWKESVRE---LGQVPIMLRSNRCYLEKCSPEQLVQH 183
Query: 97 KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQ 156
KEE+ E+GGYF++NG E++ R +I+ ++N+PM+++RSSF R YT + IR VR DQ
Sbjct: 184 KEESEELGGYFVVNGNEKLIRMLIVGRRNFPMAIIRSSFMKRGPTYTKFGIQIRSVRPDQ 243
Query: 157 SSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKE 216
+S T L+YL +G+V F + EYL+PV ++LK LV TND +IF L ++
Sbjct: 244 TSQTNFLHYLSDGNVTFRFTWRKNEYLVPVVMILKGLVQTNDRDIFERLV-----GHEGS 298
Query: 217 KGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIR 276
+G + + V++RV+++L + + R ++GE F+PV+ AV +R
Sbjct: 299 EG-IKNSFVTDRVELLLRTYKGYGIHGRDDIRAYLGEKFRPVLGMPTDIPDEAVGVEFLR 357
Query: 277 DYIFVHLND-------NNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
+ HL + +NDKFN+++FM++KL++LV DNPD++ NQE+LL G L
Sbjct: 358 KVVLPHLGNHNVTDSQDNDKFNMILFMIRKLYTLVAGDCAPDNPDAVSNQEVLLGGFLYG 417
Query: 330 IYLKEKLEDWLRKGKKLIQD-EIENNGKKF--DFFNLANIKKVMEKNPSKQIGTSIETML 386
+ LKE+LE+WLR + QD ++N +F F + +++ + ++ IG ++E L
Sbjct: 418 MLLKERLEEWLRSFGPIAQDWSVKNQNARFIDPKFEKEFLSRIVART-NENIGGALEYFL 476
Query: 387 KTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESW 446
TG L + TGLDLQQ +GYTV AE++NF RFIS FR +HRG+ FA L+TT+VRKLLPESW
Sbjct: 477 STGNLVSPTGLDLQQPSGYTVMAEKINFYRFISHFRMIHRGSFFAQLKTTTVRKLLPESW 536
Query: 447 GFLCPVHTPDGEPCGLLNHMTSTCRV-ASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSL 505
GFLCPVHTPDG PCGLLNH+ C++ S D G + +++ +G+
Sbjct: 537 GFLCPVHTPDGSPCGLLNHLAHKCKIETSNLDVSG-----------VPQIISNLGVTSES 585
Query: 506 PKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSL 565
++ + V +DGR++G + + LR KV +P +LE+GYVP S
Sbjct: 586 SVSLE----ESVVVQMDGRILGYCSPKQARIISDTLRYWKVEGNKSLPVELEIGYVPNSN 641
Query: 566 GGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRNA 624
G YPG+YLF+ + VRPV+ + L ++ +GPFEQ FMEI C P G
Sbjct: 642 RGQYPGIYLFSQCARMVRPVKYLPL-----DKLDYVGPFEQPFMEIACVPSDIISG---- 692
Query: 625 FPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYH 684
+TH E PT +LS+VAN+TP+SD NQSPRNMYQCQM KQ MG ++++R D KLY
Sbjct: 693 -VSTHVEFDPTYILSIVANMTPFSDFNQSPRNMYQCQMGKQAMGTPGTSIQYRTDNKLYR 751
Query: 685 LQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQI 744
LQT QTPIVR Y YG+D +P G NA+VAVL+YTGYDM+DAMI+N+S+ DRG G I
Sbjct: 752 LQTGQTPIVRPPLYNCYGLDNFPNGMNAVVAVLSYTGYDMDDAMIINRSAHDRGFGWGTI 811
Query: 745 YQTETIDLSDDGNKVDRGQ------KLFRRNKDA---KSLHSVIDSDGLPYVGQMIHPGE 795
Y+T+ L DD RG+ KLF +D DGLP++G + G
Sbjct: 812 YKTKVYSL-DDKESRGRGKAKREIAKLFGFAPGGLIKGEWRQTLDEDGLPHIGVRVTEGS 870
Query: 796 PYCSI----YDKTTNSWRTNSR-------KGSESVFVDYVAVDMKNSKNLP-QKANIRFR 843
+ +D +NS+ R K +E ++D V + + P Q +I++R
Sbjct: 871 IVAAWHTVRFDAVSNSYINIDRQTHFLKYKDTEEGYIDSVRILGSETGGDPCQAISIKYR 930
Query: 844 HTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLE 903
R P+IGDKFSSRHGQKGVCSQLWP IDMPFS +G++PD+IINPHAFPSRMTI M +E
Sbjct: 931 IPRKPVIGDKFSSRHGQKGVCSQLWPAIDMPFS-ESGIQPDVIINPHAFPSRMTIGMFVE 989
Query: 904 SVAAK 908
S+A K
Sbjct: 990 SLAGK 994
>gi|440910777|gb|ELR60535.1| DNA-directed RNA polymerase I subunit RPA2 [Bos grunniens mutus]
Length = 1135
Score = 679 bits (1752), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 386/945 (40%), Positives = 533/945 (56%), Gaps = 91/945 (9%)
Query: 12 LRELVRHHIESFDYMLDEGLSEMFD----------------------------------- 36
L+EL R H+ESF+Y + EGLS
Sbjct: 35 LQELTRAHVESFNYAVREGLSHAVQAVPPFEFAFKDERICLTIVDAVISPPAVPKGSICK 94
Query: 37 -------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGAD 89
CR + +Y GKL AD+ + V+++ G P+M+K++ C+L
Sbjct: 95 ELNVYPAECRGRRSTYRGKLTADISWSVNGISKGVIKQFL--GYVPIMVKSKLCNLYNLP 152
Query: 90 SQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVI 149
+ L+ EEA EMGGYFI+NG+E+V R +I+P++N+P++MVR ++ R GYT V +
Sbjct: 153 PKALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMVRPKWKSRGPGYTQYGVSM 212
Query: 150 RCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY 209
CVR++ S+V + L+YL NG+V L F + + + LP+G LKALV +D +IF L
Sbjct: 213 HCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELI--- 269
Query: 210 DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYA 269
KE + VS+ ++I++ E +T+ Q L ++GE F+ +
Sbjct: 270 ---KGKEDDSFFRNSVSQMLRIVMEE----GCSTQKQVLNYLGERFRVKLSLPDWYPNEQ 322
Query: 270 VAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
AE + I +HL N +KF +L M +KLF+L + +NPDSL NQE+L PG L
Sbjct: 323 AAEFLFNQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMEENPDSLMNQEVLTPGQLFL 382
Query: 330 IYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTG 389
++LKEKLE WL K I + + + NL I + + E +L TG
Sbjct: 383 MFLKEKLEAWLVSIKIAIDKKSQKTNVSLNNENLMKIFSL-----GIDLTKPFEYLLATG 437
Query: 390 RLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFL 449
L ++TGL Q +G V A++LNF+R++S FR VHRGA FA +RTT+VR+LLPESWGFL
Sbjct: 438 NLRSKTGLGFLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVRRLLPESWGFL 497
Query: 450 CPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLV 509
CPVHTPDGEPCGL+NH+T+ C V + S SI +L +G+ P V
Sbjct: 498 CPVHTPDGEPCGLMNHLTAICEVVTQ----------SVYTASIPALLCNLGVTP-----V 542
Query: 510 KSGPPAVLS----VLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSL 565
P S VLLDG ++G + LR KV IP +EV +P++
Sbjct: 543 DGTPHRPYSECYPVLLDGVMIGWADKEIAPGIADSLRHFKVLREKRIPPWMEVALIPMTG 602
Query: 566 GGA-YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNA 624
+ YPGLYLFT+P + VRPV+N+ L EE LIG EQ+FM + + A
Sbjct: 603 KPSLYPGLYLFTTPCRLVRPVQNLELGKEE-----LIGTMEQIFMNVAIFED----EVLA 653
Query: 625 FPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYH 684
TH+E+ P +LSV+AN P+SDHNQSPRNMYQCQM KQTMGF + + R+D KLY
Sbjct: 654 GVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTFQDRSDNKLYR 713
Query: 685 LQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQI 744
LQTPQ+P+VR Y Y +D YP GTNAIVAV++YTGYDMEDAMI+NK+S +RG HG +
Sbjct: 714 LQTPQSPLVRPYMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSV 773
Query: 745 YQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKT 804
Y++E IDLS+ + D + D + L +D DGLP++G + G+PY S +
Sbjct: 774 YKSEFIDLSERIKQGDDSLVFGVKPGDPRVLQK-LDDDGLPFIGAQLKYGDPYYSYLNLN 832
Query: 805 TNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHTRNPIIGDKFSSRHGQKGV 863
T K E+ VD + V ++ N K I R RNP IGDKF+SRHGQKG+
Sbjct: 833 TGEGFVMYYKSKENCIVDNIKVCSNDTGNGKFKCVCITMRVPRNPTIGDKFASRHGQKGI 892
Query: 864 CSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
S+LWP DMPF+ +GM PD++ NPH FPSRMTI ML+ES+A K
Sbjct: 893 LSRLWPVEDMPFTE-SGMVPDILFNPHGFPSRMTIGMLIESMAGK 936
>gi|348558605|ref|XP_003465108.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2-like isoform
2 [Cavia porcellus]
Length = 1079
Score = 679 bits (1752), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 386/913 (42%), Positives = 538/913 (58%), Gaps = 67/913 (7%)
Query: 2 ARKKSADFEPLRELVRHHIESFDYMLDEGLSEMFDHCRQAKISYTGKLMADVEFQYLDAG 61
A++K+A L+EL R H++SF+Y + EGLS+ Q IS++ ++
Sbjct: 29 AQQKAA----LQELTRAHVDSFNYAVCEGLSQAV----QVDISWS-----------VNGI 69
Query: 62 SPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVIL 121
S V ++F G P+M+K++ C+L + L+ EEA EMGGYFI+NG+E+V R +I+
Sbjct: 70 SRGVIKQF-LGYVPIMVKSKLCNLHNLPPKALIEHHEEAEEMGGYFIINGIEKVIRMLIM 128
Query: 122 PKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKE 181
P++N+P+++VR ++ R GYT V I CVR D S+V + L+YL NG+V L F + +
Sbjct: 129 PRRNFPIALVRPKWKSRGPGYTQFGVSIHCVRGDHSAVNMNLHYLENGTVMLNFIYRKEL 188
Query: 182 YLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSL 241
+ LP+G LKALV +D +IF L KE+ + VS+ ++I++ E
Sbjct: 189 FFLPLGFALKALVSFSDYQIFQELI------KGKEEDSFFRNSVSQMLRIVMEE----GG 238
Query: 242 TTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLF 301
+T+ Q L ++GE F+ + S AE + I +HL N +KF+LL FM +KLF
Sbjct: 239 STQKQVLNYLGECFRIKLSLPDWYSNEQAAEFLFNQCICIHLKSNTEKFHLLCFMTRKLF 298
Query: 302 SLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFF 361
+L + +NPDSL NQEIL PG L ++LKEK+E WL K + + +
Sbjct: 299 ALAKGECLEENPDSLVNQEILTPGQLFLMFLKEKMEAWLVSVKIALDKRAQKTNVSINTE 358
Query: 362 NLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFF 421
NL I + + E +L TG L ++TGL Q +G V A++LNF+R++S F
Sbjct: 359 NLMKIFSM-----GGDLTRPFEYLLATGNLRSKTGLGFMQDSGLCVVADKLNFIRYLSHF 413
Query: 422 RAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGN 481
R VHRG FA +RTT+VR+LLPESWGFLCPV+TPDG PCGL+NH+T+ C V + +
Sbjct: 414 RCVHRGGDFAKMRTTTVRRLLPESWGFLCPVNTPDGAPCGLMNHLTAICEVVTQF----- 468
Query: 482 IRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLS----VLLDGRVVGVIPSSEIEKV 537
TSI +L +G+ P V P S VLLDG +VG + V
Sbjct: 469 -----AYTTSIPALLCSLGVTP-----VDGAPHRPYSECYPVLLDGVMVGWVDKELAPGV 518
Query: 538 VAHLRRLKVSAASVIPDDLEVGYVPLSLGGA-YPGLYLFTSPPKFVRPVRNISLPSEESQ 596
LRR KV IP +EV +P++ + YPGL+LFT+P + VRPV+N+ L EE
Sbjct: 519 ADSLRRFKVLREKRIPPWMEVALIPITGKPSLYPGLFLFTTPCRLVRPVQNLELGREE-- 576
Query: 597 NIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRN 656
LIG EQ+FM I + A TH+E+ P +LSV+AN P+SDHNQSPRN
Sbjct: 577 ---LIGTMEQLFMNIAILED----EVCAGITTHQELFPHSLLSVIANFIPFSDHNQSPRN 629
Query: 657 MYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAV 716
MYQCQM+KQTMGF + + R+D KLY LQTPQ+P+VR Y Y +D YP GTNAIVAV
Sbjct: 630 MYQCQMSKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPYMYDYYDMDNYPIGTNAIVAV 689
Query: 717 LAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLH 776
++YTGYDMEDAMI+NK+S +RG HG +Y+TE I+LS+ + D + D + +
Sbjct: 690 ISYTGYDMEDAMIVNKASWERGFAHGSVYKTEFINLSEKIKQGDDSLVFGVKPGDPRVMQ 749
Query: 777 SVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQ 836
+D DGLP++G + G+PY + T K E+ VD + V S +
Sbjct: 750 K-LDDDGLPFIGAKLQYGDPYYGYLNLNTGESYVMYYKSKENCIVDNIKVCSNESGSGKF 808
Query: 837 KA-NIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSR 895
K I R RNP IGDKF+SRHGQKG+ S+LWP DMPF+ +GM PD++ NPH FPSR
Sbjct: 809 KCICITMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTE-SGMMPDILFNPHGFPSR 867
Query: 896 MTIAMLLESVAAK 908
MTI ML+ES+A K
Sbjct: 868 MTIGMLIESMAGK 880
>gi|348558603|ref|XP_003465107.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2-like isoform
1 [Cavia porcellus]
Length = 1135
Score = 679 bits (1752), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 388/955 (40%), Positives = 541/955 (56%), Gaps = 95/955 (9%)
Query: 2 ARKKSADFEPLRELVRHHIESFDYMLDEGLSEMFD------------------------- 36
A++K+A L+EL R H++SF+Y + EGLS+
Sbjct: 29 AQQKAA----LQELTRAHVDSFNYAVCEGLSQAVQAIPSFEFAFKDERISLTIVDAVISP 84
Query: 37 -----------------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLK 79
CR K +Y G+L D+ + V+++ G P+M+K
Sbjct: 85 PTVPKGTICREPNVYPAECRGRKSTYRGRLTVDISWSVNGISRGVIKQFL--GYVPIMVK 142
Query: 80 TRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRR 139
++ C+L + L+ EEA EMGGYFI+NG+E+V R +I+P++N+P+++VR ++ R
Sbjct: 143 SKLCNLHNLPPKALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIALVRPKWKSRG 202
Query: 140 EGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDL 199
GYT V I CVR D S+V + L+YL NG+V L F + + + LP+G LKALV +D
Sbjct: 203 PGYTQFGVSIHCVRGDHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALKALVSFSDY 262
Query: 200 EIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVI 259
+IF L KE+ + VS+ ++I++ E +T+ Q L ++GE F+ +
Sbjct: 263 QIFQELI------KGKEEDSFFRNSVSQMLRIVMEE----GGSTQKQVLNYLGECFRIKL 312
Query: 260 DGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQ 319
S AE + I +HL N +KF+LL FM +KLF+L + +NPDSL NQ
Sbjct: 313 SLPDWYSNEQAAEFLFNQCICIHLKSNTEKFHLLCFMTRKLFALAKGECLEENPDSLVNQ 372
Query: 320 EILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIG 379
EIL PG L ++LKEK+E WL K + + + NL I + +
Sbjct: 373 EILTPGQLFLMFLKEKMEAWLVSVKIALDKRAQKTNVSINTENLMKIFSM-----GGDLT 427
Query: 380 TSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVR 439
E +L TG L ++TGL Q +G V A++LNF+R++S FR VHRG FA +RTT+VR
Sbjct: 428 RPFEYLLATGNLRSKTGLGFMQDSGLCVVADKLNFIRYLSHFRCVHRGGDFAKMRTTTVR 487
Query: 440 KLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGV 499
+LLPESWGFLCPV+TPDG PCGL+NH+T+ C V + + TSI +L +
Sbjct: 488 RLLPESWGFLCPVNTPDGAPCGLMNHLTAICEVVTQF----------AYTTSIPALLCSL 537
Query: 500 GMIPSLPKLVKSGPPAVLS----VLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDD 555
G+ P V P S VLLDG +VG + V LRR KV IP
Sbjct: 538 GVTP-----VDGAPHRPYSECYPVLLDGVMVGWVDKELAPGVADSLRRFKVLREKRIPPW 592
Query: 556 LEVGYVPLSLGGA-YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCP 614
+EV +P++ + YPGL+LFT+P + VRPV+N+ L EE LIG EQ+FM I
Sbjct: 593 MEVALIPITGKPSLYPGLFLFTTPCRLVRPVQNLELGREE-----LIGTMEQLFMNIAIL 647
Query: 615 DGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQAL 674
+ A TH+E+ P +LSV+AN P+SDHNQSPRNMYQCQM+KQTMGF +
Sbjct: 648 ED----EVCAGITTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMSKQTMGFPLLTY 703
Query: 675 KFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSS 734
+ R+D KLY LQTPQ+P+VR Y Y +D YP GTNAIVAV++YTGYDMEDAMI+NK+S
Sbjct: 704 QDRSDNKLYRLQTPQSPLVRPYMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKAS 763
Query: 735 VDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPG 794
+RG HG +Y+TE I+LS+ + D + D + + +D DGLP++G + G
Sbjct: 764 WERGFAHGSVYKTEFINLSEKIKQGDDSLVFGVKPGDPRVMQK-LDDDGLPFIGAKLQYG 822
Query: 795 EPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHTRNPIIGDK 853
+PY + T K E+ VD + V S + K I R RNP IGDK
Sbjct: 823 DPYYGYLNLNTGESYVMYYKSKENCIVDNIKVCSNESGSGKFKCICITMRVPRNPTIGDK 882
Query: 854 FSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
F+SRHGQKG+ S+LWP DMPF+ +GM PD++ NPH FPSRMTI ML+ES+A K
Sbjct: 883 FASRHGQKGILSRLWPAEDMPFTE-SGMMPDILFNPHGFPSRMTIGMLIESMAGK 936
>gi|344291448|ref|XP_003417447.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase I
subunit RPA2-like [Loxodonta africana]
Length = 1135
Score = 679 bits (1751), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/878 (42%), Positives = 523/878 (59%), Gaps = 51/878 (5%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR + +Y GKL AD+ + ++++ G P+M+K++ C+L + L+
Sbjct: 103 CRGRRSTYRGKLTADISWAVNGISKGIIKQFL--GYVPIMVKSKVCNLHSLPPKALIEHH 160
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
EEA EMGGYFI+NG+E+V R +I+P++N+P++M+R ++ R GYT V + CVR++ S
Sbjct: 161 EEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWKSRGLGYTQYGVSMHCVREEHS 220
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
+V + L+YL NG+V L F + + + LP+G LKALV +D +IF L KE
Sbjct: 221 AVNMNLHYLENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELI------RGKED 274
Query: 218 GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRD 277
+ VS+ ++I+ E +T+ Q L ++GE F+ ++ + AE +
Sbjct: 275 DSFFRNSVSQMLRIVTEE----GCSTQKQVLNYLGECFRVKLNLPEWYPNEQAAEFLFDQ 330
Query: 278 YIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLE 337
I +HLN N +KF +L M +KLF+L + +NPDSL NQE+L PG L ++LKEK+E
Sbjct: 331 CICIHLNSNTEKFYVLCLMTRKLFALAKGECMEENPDSLMNQEVLTPGQLFLMFLKEKME 390
Query: 338 DWLRKGKKLIQDEIENNGKKFDF-FNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTG 396
WL I+ I+ +K + N N+ K+ N + E +L TG L ++TG
Sbjct: 391 AWLVS----IKIAIDKKAQKINLSINTENLMKIF--NMGTDLTRPFEYLLATGNLRSKTG 444
Query: 397 LDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPD 456
L Q +G V A++LNF+R++S FR VHRGA FA +RTT+VR+LLPESWGFLCPVHTPD
Sbjct: 445 LGFLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVRRLLPESWGFLCPVHTPD 504
Query: 457 GEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGP--- 513
GEPCGL+NH+T+ C V + + TSI +L +G+ P V P
Sbjct: 505 GEPCGLMNHLTAVCEVVTQF----------VYTTSIPALLCNLGVTP-----VDGAPHRP 549
Query: 514 -PAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLS-LGGAYPG 571
VLLDG +VG + + LRR KV IP +EV +P++ YPG
Sbjct: 550 HSECYPVLLDGVMVGWVEKDLAPGIAESLRRFKVLREKRIPPWMEVALIPMTGKPNLYPG 609
Query: 572 LYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEE 631
L+LFT+P + VRPV+N+ L EE LIG EQVFM I + A TH+E
Sbjct: 610 LFLFTTPCRLVRPVQNLELGKEE-----LIGTMEQVFMNIAIFED----EVFAGVTTHQE 660
Query: 632 IHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTP 691
+ P +LSV+A+ P+SDHNQSPRNMYQCQM KQTMGF + + R+D KLY LQTPQ+P
Sbjct: 661 LFPHSLLSVIASFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTPQSP 720
Query: 692 IVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETID 751
+VR Y Y +D YP GTNAIVAV++YTGYDMEDAMI+NK+S +RG HG +Y++E ID
Sbjct: 721 LVRPYMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFID 780
Query: 752 LSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTN 811
LS+ + D + D + L +D DGLP++G + G+PY S + T
Sbjct: 781 LSEKIKQGDDSLVFGVKPGDPRILQK-LDDDGLPFIGAQLQYGDPYYSYLNLNTGENFVV 839
Query: 812 SRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPD 870
K E+ VD + V ++ + K I R RNP IGDKF+SRHGQKG+ S+LWP
Sbjct: 840 YYKSKENCVVDNIKVCSNDTGSGKFKCVCITMRVPRNPTIGDKFASRHGQKGILSRLWPV 899
Query: 871 IDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
DMPF+ +GM PD++ NPH FPSRMTI ML+ES+A K
Sbjct: 900 EDMPFTE-SGMVPDILFNPHGFPSRMTIGMLIESMAGK 936
>gi|33469941|ref|NP_061887.2| DNA-directed RNA polymerase I subunit RPA2 isoform 1 [Homo sapiens]
gi|92090637|sp|Q9H9Y6.2|RPA2_HUMAN RecName: Full=DNA-directed RNA polymerase I subunit RPA2; Short=RNA
polymerase I subunit 2; AltName: Full=DNA-directed RNA
polymerase I 135 kDa polypeptide; Short=RPA135
gi|62420281|gb|AAX81999.1| unknown [Homo sapiens]
gi|119593998|gb|EAW73592.1| polymerase (RNA) I polypeptide B, 128kDa, isoform CRA_c [Homo
sapiens]
Length = 1135
Score = 679 bits (1751), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/941 (40%), Positives = 536/941 (56%), Gaps = 83/941 (8%)
Query: 12 LRELVRHHIESFDYMLDEGLS--------------------EMFD--------------- 36
L+EL R H+ESF+Y + EGL + D
Sbjct: 35 LQELTRAHVESFNYAVHEGLGLAVQAIPPFEFAFKDERISFTILDAVISPPTVPKGTICK 94
Query: 37 -------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGAD 89
CR + +Y GKL AD+ + ++++ G P+M+K++ C+L+
Sbjct: 95 EANVYPAECRGRRSTYRGKLTADINWAVNGISKGIIKQFL--GYVPIMVKSKLCNLRNLP 152
Query: 90 SQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVI 149
Q L+ EEA EMGGYFI+NG+E+V R +I+P++N+P++M+R ++ R GYT V +
Sbjct: 153 PQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWKTRGPGYTQYGVSM 212
Query: 150 RCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY 209
CVR++ S+V + L+YL NG+V L F + + + LP+G LKALV +D +IF L
Sbjct: 213 HCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELI--- 269
Query: 210 DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYA 269
KE + VS+ ++I++ E +T+ Q L ++GE F+ ++
Sbjct: 270 ---KGKEDDSFLRNSVSQMLRIVMEE----GCSTQKQVLNYLGECFRVKLNVPDWYPNEQ 322
Query: 270 VAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
AE + I +HL N +KF +L M +KLF+L + DNPDSL NQE+L PG L
Sbjct: 323 AAEFLFNQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMEDNPDSLVNQEVLTPGQLFL 382
Query: 330 IYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTG 389
++LKEKLE WL K + + + NL I + + E + TG
Sbjct: 383 MFLKEKLEGWLVSIKIAFDKKAQKTSVSMNTDNLMRIFTM-----GIDLTKPFEYLFATG 437
Query: 390 RLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFL 449
L ++TGL L Q +G V A++LNF+R++S FR VHRGA FA +RTT+VR+LLPESWGFL
Sbjct: 438 NLRSKTGLGLLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVRRLLPESWGFL 497
Query: 450 CPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLV 509
CPVHTPDGEPCGL+NH+T+ C V + + +I L +GV I P
Sbjct: 498 CPVHTPDGEPCGLMNHLTAVCEVVTQFVYTASI--------PALLCNLGVTPIDGAPHRS 549
Query: 510 KSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGA- 568
S VLLDG +VG + + LR KV IP +EV +P++ +
Sbjct: 550 YS---ECYPVLLDGVMVGWVDKDLAPGIADSLRHFKVLREKRIPPWMEVVLIPMTGKPSL 606
Query: 569 YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPAT 628
YPGL+LFT+P + VRPV+N++L EE LIG EQ+FM + + A T
Sbjct: 607 YPGLFLFTTPCRLVRPVQNLALGKEE-----LIGTMEQIFMNVAIFED----EVFAGVTT 657
Query: 629 HEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTP 688
H+E+ P +LSV+AN P+SDHNQSPRNMYQCQM KQTMGF + + R+D KLY LQTP
Sbjct: 658 HQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTP 717
Query: 689 QTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTE 748
Q+P+VR + Y Y +D YP GTNAIVAV++YTGYDMEDAMI+NK+S +RG HG +Y++E
Sbjct: 718 QSPLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSE 777
Query: 749 TIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSW 808
IDLS+ + D + D + L +D DGLP++G + G+PY S + T
Sbjct: 778 FIDLSEKIKQGDSSLVFGIKPGDPRVLQK-LDDDGLPFIGAKLQYGDPYYSYLNLNTGES 836
Query: 809 RTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHTRNPIIGDKFSSRHGQKGVCSQL 867
K E+ VD + V ++ + K I R RNP IGDKF+SRHGQKG+ S+L
Sbjct: 837 FVMYYKSKENCVVDNIKVCSNDTGSGKFKCVCITMRVPRNPTIGDKFASRHGQKGILSRL 896
Query: 868 WPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
WP DMPF+ +GM PD++ NPH FPSRMTI ML+ES+A K
Sbjct: 897 WPAEDMPFTE-SGMVPDILFNPHGFPSRMTIGMLIESMAGK 936
>gi|301781941|ref|XP_002926382.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2-like isoform
1 [Ailuropoda melanoleuca]
gi|281347779|gb|EFB23363.1| hypothetical protein PANDA_016030 [Ailuropoda melanoleuca]
Length = 1135
Score = 678 bits (1750), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/945 (40%), Positives = 533/945 (56%), Gaps = 91/945 (9%)
Query: 12 LRELVRHHIESFDYMLDEGLSEMFD----------------------------------- 36
L+EL R H+ESF+Y + EGLS
Sbjct: 35 LQELTRAHVESFNYAVREGLSHAVQAIPPFEFAFKDERISLTIVDAVISPPMVPKGNICK 94
Query: 37 -------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGAD 89
CR + +Y GKL AD+ + ++++ G P+M+K++ C+L
Sbjct: 95 ELNIYPAECRGRRSTYRGKLTADISWAVNGISRGIIKQFL--GYVPIMVKSKLCNLHSLP 152
Query: 90 SQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVI 149
+ L+ EEA EMGGYFI+NG+E+V R +I+P++N+P++M+R ++ R GYT V +
Sbjct: 153 PRALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPVAMIRPKWKTRGPGYTQYGVSM 212
Query: 150 RCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY 209
CVR++ S+V + L+YL NG+V L F + + + LP+G LKALV +D +IF L
Sbjct: 213 HCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELI--- 269
Query: 210 DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYA 269
KE+ + VS+ ++I++ E +T+ Q L ++GE F+ +
Sbjct: 270 ---KGKEEDSFFRNSVSQMLRIVMEE----GCSTQKQVLNYLGECFRVKLSLPDWYPNEQ 322
Query: 270 VAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
AE + I +HL N +KF +L M +KLF+L + DNPDSL NQE+L PG L
Sbjct: 323 AAEFLFDQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMEDNPDSLVNQEVLTPGQLFL 382
Query: 330 IYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTG 389
++LKEK+E WL K + + + NL I + + E +L TG
Sbjct: 383 MFLKEKMESWLVSIKIALDKRSQKTNVSINTENLMKIFSL-----GTDLTKPFEYLLATG 437
Query: 390 RLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFL 449
L ++TGL Q +G V A++LNF+R++S FR VHRGA FA +RTT+VR+LLPESWGFL
Sbjct: 438 NLRSKTGLGFLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVRRLLPESWGFL 497
Query: 450 CPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLV 509
CPVHTPDGEPCGL+NH+T+ C V + + S+ +L +G+ P V
Sbjct: 498 CPVHTPDGEPCGLMNHLTAVCEVVTQF----------VYTASVPALLCSLGVTP-----V 542
Query: 510 KSGP----PAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSL 565
P VLLDG +VG + + LR KV IP +EV +P++
Sbjct: 543 DGAPHRPYAECYPVLLDGVMVGWVDKELAPSIADSLRHFKVLREKRIPPWMEVALIPMTG 602
Query: 566 GGA-YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNA 624
+ YPGL+LFT+P + VRPV+N+ L EE LIG EQ+FM I + A
Sbjct: 603 KPSLYPGLFLFTTPCRLVRPVQNLELGKEE-----LIGTMEQIFMNIAIFED----EVLA 653
Query: 625 FPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYH 684
TH+E+ P +LSV+AN P+SDHNQSPRNMYQCQM KQTMGF + + R+D KLY
Sbjct: 654 GVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQARSDNKLYR 713
Query: 685 LQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQI 744
LQTPQ+P+VR Y Y +D YP GTNAIVAV++YTGYDMEDAMI+NK+S +RG HG +
Sbjct: 714 LQTPQSPLVRPYMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSV 773
Query: 745 YQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKT 804
Y++E IDLS+ + D + D + L +D DGLP++G + G+PY S +
Sbjct: 774 YKSEFIDLSEKIKQGDDSLVFGVKPGDPRILQK-LDDDGLPFIGAQLQYGDPYYSYLNLN 832
Query: 805 TNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHTRNPIIGDKFSSRHGQKGV 863
T K E+ VD + V ++ + K I R RNP IGDKF+SRHGQKG+
Sbjct: 833 TGESFVMYYKSKENCIVDNIKVCSNDTGSGKFKCICITMRVPRNPTIGDKFASRHGQKGI 892
Query: 864 CSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
S+LWP DMPF+ +GM PD++ NPH FPSRMTI ML+ES+A K
Sbjct: 893 LSRLWPAEDMPFTE-SGMVPDILFNPHGFPSRMTIGMLIESMAGK 936
>gi|296223273|ref|XP_002807565.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase I
subunit RPA2 [Callithrix jacchus]
Length = 1165
Score = 678 bits (1750), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/945 (40%), Positives = 539/945 (57%), Gaps = 91/945 (9%)
Query: 12 LRELVRHHIESFDYMLDEGLS--------------------EMFD--------------- 36
L+EL R H+ESF+Y + EGL + D
Sbjct: 65 LQELTRAHVESFNYAVHEGLGLAVQAIPPFEFAFKDQRISFTILDAVISPPTVPKGTICK 124
Query: 37 -------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGAD 89
CR + +Y GKL DV + ++++ + G P+M+K++ C+L
Sbjct: 125 EASVYPAECRGRRSTYRGKLTVDVNWAVNGISKGIIKQ--SLGYVPIMVKSKLCNLHNLP 182
Query: 90 SQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVI 149
Q L+ EEA EMGGYFI+NG+E+V R +I+P++N+P++M+R ++ R GYT V +
Sbjct: 183 PQALIQHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWKTRGPGYTQYGVSM 242
Query: 150 RCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY 209
CV+++ S+V + L+YL NG+V L F + + + LP+G LKALV +D +IF L
Sbjct: 243 HCVKEEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELI--- 299
Query: 210 DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYA 269
KE + VS+ ++I++ E +T+ Q L ++GE F+ ++
Sbjct: 300 ---KGKEDDSFFRNSVSQMLRIVMEE----GCSTQKQVLNYLGECFRVKLNVPDWYPNEQ 352
Query: 270 VAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
AE + I +HL N +KF +L M +KLF+L + DNPDSL NQE+L PG L
Sbjct: 353 AAEFLFNQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMEDNPDSLVNQEVLTPGQLFL 412
Query: 330 IYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTG 389
++LKEKLE WL K + + + + NL I + + E +L TG
Sbjct: 413 MFLKEKLEGWLVSIKIVFDKKAQKTNLSMNTDNLMKIFTM-----GLDLTKPFEYLLATG 467
Query: 390 RLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFL 449
L ++TGL L Q +G V A++LNF+R++S FR VHRG+ FA +RTT+VR+LLPESWGFL
Sbjct: 468 NLRSKTGLGLLQASGLCVVADKLNFIRYLSHFRCVHRGSDFAKMRTTTVRRLLPESWGFL 527
Query: 450 CPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLV 509
CPVHTPDGEPCGL+NH+T+ C V + + TSI +L +G+ P V
Sbjct: 528 CPVHTPDGEPCGLMNHLTAVCEVVTQF----------VYTTSIPALLCNLGVTP-----V 572
Query: 510 KSGPPAVLS----VLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSL 565
P S VLLDG +VG + + LR KV IP +EV +P++
Sbjct: 573 DGAPHQPYSECYPVLLDGVMVGWVDKELALGIADSLRHFKVLREKRIPPWMEVVLIPMTG 632
Query: 566 GGA-YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNA 624
+ YPGL+LFT+P + +RPV+N+ L EE LIG EQ+FM + + A
Sbjct: 633 KPSLYPGLFLFTTPCRLIRPVQNLELGKEE-----LIGTMEQIFMNVAIYED----EVFA 683
Query: 625 FPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYH 684
TH+E+ P +LSV+AN P+SDHNQSPRNMYQCQM KQTMGF + + R+D KLY
Sbjct: 684 GVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYR 743
Query: 685 LQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQI 744
LQTPQ+P+VR + Y Y +D YP GTNAIVAV++YTGYDMEDAMI+NK+S +RG HG +
Sbjct: 744 LQTPQSPLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSV 803
Query: 745 YQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKT 804
Y++E IDLS+ + D + D + L +D DGLP++G + G+PY S +
Sbjct: 804 YKSEFIDLSEKIKQGDSSLVFGIKPGDPRVLQK-LDDDGLPFIGAKLQYGDPYYSYLNLN 862
Query: 805 TNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHTRNPIIGDKFSSRHGQKGV 863
T K E+ VD + V ++ + K I R RNP IGDKF+SRHGQKG+
Sbjct: 863 TGESFVMYYKSKENCVVDNIKVCSNDTGSGKFKCVCITMRVPRNPTIGDKFASRHGQKGI 922
Query: 864 CSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
S+LWP DMPF+ +GM PD++ NPH FPSRMTI ML+ES+A K
Sbjct: 923 LSRLWPVEDMPFTE-SGMVPDILFNPHGFPSRMTIGMLIESMAGK 966
>gi|410955302|ref|XP_003984295.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 2
[Felis catus]
Length = 1079
Score = 678 bits (1750), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/904 (42%), Positives = 535/904 (59%), Gaps = 65/904 (7%)
Query: 12 LRELVRHHIESFDYMLDEGLSEMFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNF 71
L+EL R H+ESF+Y + EGLS H QA IS+ ++ S V ++F
Sbjct: 35 LQELTRAHVESFNYAVREGLS----HAVQADISWA-----------VNGISKGVIKQF-L 78
Query: 72 GQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMV 131
G P+M+K++ C+L + L+ EEA EMGGYFI+NG+E+V R +I+P++N+P++MV
Sbjct: 79 GYVPIMVKSKLCNLYNLPPKALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMV 138
Query: 132 RSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLK 191
R ++ R GYT V + CVR++ S+V + L+YL NG+V L F + + + LP+G LK
Sbjct: 139 RPKWKTRGPGYTQYGVSMHCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALK 198
Query: 192 ALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHI 251
ALV+ +D +IF L KE+ + +S+ ++I++ E +T+ Q L ++
Sbjct: 199 ALVNFSDYQIFQELI------KGKEEDSFFRNSISQMLRIVMEE----GCSTQKQVLNYL 248
Query: 252 GEHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSD 311
GE F+ + AE + I +HL + +KF +L M +KLF+L + +
Sbjct: 249 GECFRVKLSLPDWYPNEQAAEFLFNQCICIHLKSSTEKFYMLCLMTRKLFALAKGECMEE 308
Query: 312 NPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDF-FNLANIKKVM 370
NPDSL NQE+L PG L ++LKEK+E WL I+ ++ +K + N N+ K+
Sbjct: 309 NPDSLVNQEVLTPGQLFLMFLKEKMEAWLVS----IKIALDKRAQKANVSINTENLMKIF 364
Query: 371 EKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASF 430
+ E +L TG L ++TGL Q +G V A++LNF+R++S FR VHRGA F
Sbjct: 365 SM--GTDLTKPFEYLLATGNLRSKTGLGFLQDSGLCVVADKLNFIRYLSHFRCVHRGADF 422
Query: 431 AGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRT 490
A +RTT+VR+LLPESWGFLCPVHTPDGEPCGL+NH+T+ C V + +
Sbjct: 423 AKMRTTTVRRLLPESWGFLCPVHTPDGEPCGLMNHLTAVCEVVTQF----------VYTA 472
Query: 491 SILRVLIGVGMIPSLPKLVKSGPPAVLS----VLLDGRVVGVIPSSEIEKVVAHLRRLKV 546
SI +L +G+ P V P S VLLDG +VG + V LR KV
Sbjct: 473 SIPALLCSLGVTP-----VDGAPHRPYSECYPVLLDGVMVGWVDKDLAPGVADSLRHFKV 527
Query: 547 SAASVIPDDLEVGYVPLSLGGA-YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFE 605
IP +EV +P++ + YPGL+LFT+P + VRPV+N+ L EE LIG E
Sbjct: 528 LREKRIPPWMEVALIPMTGKPSLYPGLFLFTTPCRLVRPVQNLELGKEE-----LIGTME 582
Query: 606 QVFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQ 665
Q+FM I + A TH+E+ P +LSV+AN P+SDHNQSPRNMYQCQM KQ
Sbjct: 583 QIFMNIAIFED----EVLAGVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQ 638
Query: 666 TMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDME 725
TMGF + + R+D KLY LQTPQ+P+VR Y Y +D YP GTNAIVAV++YTGYDME
Sbjct: 639 TMGFPLLTYQARSDNKLYRLQTPQSPLVRPYMYDYYDMDNYPIGTNAIVAVISYTGYDME 698
Query: 726 DAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLP 785
DAMI+NK+S +RG HG +Y++E IDLS+ + D + D + L +D DGLP
Sbjct: 699 DAMIVNKASWERGFAHGSVYKSEFIDLSEKIKQGDDSLVFGVKPGDPRVLQK-LDDDGLP 757
Query: 786 YVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRH 844
++G + G+PY + T K E+ VD + V ++ + K I R
Sbjct: 758 FIGAQLKYGDPYYGYLNLNTGENFVIYYKSKENCIVDNIKVCSNDTGSGKFKCICITMRV 817
Query: 845 TRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLES 904
RNP IGDKF+SRHGQKG+ S+LWP DMPFS +GM PD++ NPH FPSRMTI ML+ES
Sbjct: 818 PRNPTIGDKFASRHGQKGILSRLWPAEDMPFSE-SGMVPDILFNPHGFPSRMTIGMLIES 876
Query: 905 VAAK 908
+A K
Sbjct: 877 MAGK 880
>gi|38614338|gb|AAH60656.1| Polymerase (RNA) I polypeptide B [Mus musculus]
Length = 1135
Score = 678 bits (1749), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 386/948 (40%), Positives = 543/948 (57%), Gaps = 97/948 (10%)
Query: 12 LRELVRHHIESFDYMLDEGLSEMFD----------------------------------- 36
L++L R H++SF+Y EGLS
Sbjct: 35 LQDLTRAHVDSFNYAALEGLSHAVQAIPPFEFAFKDERISLTIVDAVISPPSVPKGTICK 94
Query: 37 -------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGAD 89
CR K +Y G+L AD+ + ++++ G P+M+K++ C+L
Sbjct: 95 DLNVYPAECRGRKSTYRGRLTADISWAVNGVPKGIIKQFL--GYVPIMVKSKLCNLYNLP 152
Query: 90 SQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVI 149
+ L+ EEA EMGGYFI+NG+E+V R +I+P++N+P++MVR ++ R GYT V +
Sbjct: 153 PRVLIEHHEEAEEMGGYFIINGIEKVIRMLIVPRRNFPIAMVRPKWKSRGLGYTQFGVSM 212
Query: 150 RCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY 209
RCVR++ S+V + L+Y+ NG+V L F + + + LP+G LKALV +D +IF L
Sbjct: 213 RCVREEHSAVNMNLHYVENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELI--- 269
Query: 210 DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYA 269
KE+ + VS+ ++I++ E ++ Q L ++GE F+ +
Sbjct: 270 ---KGKEEDSFFRNSVSQMLRIVIEE----GCHSQKQVLNYLGECFRVKLSLPDWYPNVE 322
Query: 270 VAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
AE ++ I +HL N DKF LL M +KLF+L + DNPDSL NQE+ PG L
Sbjct: 323 AAEFLLNQCICIHLQSNTDKFYLLCLMTRKLFALARGECMDDNPDSLVNQEVFSPGQLFL 382
Query: 330 IYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTG 389
++LKEK+E+WL K ++ + + NL I + ++ E +L TG
Sbjct: 383 MFLKEKMENWLVSIKIVLDKRAQKANVSINNENLMKIFSM-----GTELTRPFEYLLATG 437
Query: 390 RLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFL 449
L ++TGL Q +G V A++LNFLR++S FR VHRGA+FA +RTT+VR+LLPESWGFL
Sbjct: 438 NLRSKTGLGFLQDSGLCVVADKLNFLRYLSHFRCVHRGAAFAKMRTTTVRRLLPESWGFL 497
Query: 450 CPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLV 509
CPVHTPDG PCGLLNH+T+ C V + + SI +L G+G+ P V
Sbjct: 498 CPVHTPDGAPCGLLNHLTAVCEVVTKF----------VYTASIPALLCGLGVTP-----V 542
Query: 510 KSGPPAVLS----VLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSL 565
+ P S VLLDG +VG + +V LRR KV IP +EV +P++
Sbjct: 543 DTAPCRPYSDCYPVLLDGVMVGWVDKDLAPEVADTLRRFKVLREKRIPPWMEVALIPMTG 602
Query: 566 GGA-YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRN 623
+ YPGL+LFT+P + VRPV+N+ L EE LIG EQ+FM + D GG
Sbjct: 603 KPSLYPGLFLFTTPCRLVRPVQNLELGREE-----LIGTMEQLFMNVAIFEDEVFGGI-- 655
Query: 624 AFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLY 683
+TH+E+ P +LSV+AN P+SDHNQSPRNMYQCQM KQTMGF + + R+D KLY
Sbjct: 656 ---STHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQNRSDNKLY 712
Query: 684 HLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQ 743
LQTPQ+P+VR Y Y +D YP GTNAIVAV++YTGYDMEDAMI+NK+S +RG HG
Sbjct: 713 RLQTPQSPLVRPCMYDFYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGS 772
Query: 744 IYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDK 803
+Y++E IDLS+ + + + D + + +D DGLP++G + G+PY S +
Sbjct: 773 VYKSEFIDLSEKFKQGEDNLVFGVKPGDPRVMQK-LDDDGLPFIGAKLEYGDPYYSYLNL 831
Query: 804 TTNSWRTNSRKGSESVFVDYVAV---DMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQ 860
T K E+ VD + V DM + K + I R RNP IGDKF+SRHGQ
Sbjct: 832 NTGEGFVVYYKSKENCVVDNIKVCSNDMGSGKF--KCICITVRIPRNPTIGDKFASRHGQ 889
Query: 861 KGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
KG+ S+LWP DMPF+ +GM PD++ NPH FPSRMTI ML+ES+A K
Sbjct: 890 KGILSRLWPAEDMPFTE-SGMMPDILFNPHGFPSRMTIGMLIESMAGK 936
>gi|226292175|gb|EEH47595.1| DNA-directed RNA polymerase I subunit RPA2 [Paracoccidioides
brasiliensis Pb18]
Length = 1242
Score = 678 bits (1749), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/905 (42%), Positives = 546/905 (60%), Gaps = 71/905 (7%)
Query: 38 CRQAKISYTGKLMADVEFQYLDA-GSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
CR+ +Y G+L A +E++ + VRE GQ P+ML++ RC+L+ ++LV
Sbjct: 127 CRERHATYRGRLRARLEYRINNGEWKESVRE---LGQVPIMLRSNRCYLEKCSPEQLVQH 183
Query: 97 KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQ 156
KEE+ E+GGYF++NG E++ R +I+ ++N+PM+++RSSF R YT + IR VR DQ
Sbjct: 184 KEESEELGGYFVVNGNEKLIRMLIVGRRNFPMAIIRSSFMKRGPTYTKFGIQIRSVRPDQ 243
Query: 157 SSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKE 216
+S T L+YL +G+V F + EYL+PV ++LK LV TND +IF L ++
Sbjct: 244 TSQTNFLHYLSDGNVTFRFTWRKNEYLVPVVMILKGLVQTNDRDIFERLV-----GHEGS 298
Query: 217 KGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIR 276
+G + + V++RV+++L + + R ++GE F+PV+ AV +R
Sbjct: 299 EG-IKNSFVTDRVELLLRTYKGYGIHGRDDIRAYLGEKFRPVLGMPTDIPDEAVGVEFLR 357
Query: 277 DYIFVHLND-------NNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
+ HL + +NDKFN+++FM++KL++LV DNPD++ NQE+LL G L
Sbjct: 358 KVVLPHLGNHNVTDSQDNDKFNMILFMIRKLYTLVAGDCAPDNPDAVSNQEVLLGGFLYG 417
Query: 330 IYLKEKLEDWLRKGKKLIQD-EIENNGKKF--DFFNLANIKKVMEKNPSKQIGTSIETML 386
+ LKE+LE+WLR + Q+ ++N +F F + +++ + ++ IG ++E L
Sbjct: 418 MLLKERLEEWLRSFGPIAQEWSVKNQNARFIDPKFEKEFLSRIVART-NENIGGALEYFL 476
Query: 387 KTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESW 446
TG L + TGLDLQQ +GYTV AE++NF RFIS FR +HRG+ FA L+TT+VRKLLPESW
Sbjct: 477 STGNLVSPTGLDLQQPSGYTVMAEKINFYRFISHFRMIHRGSFFAQLKTTTVRKLLPESW 536
Query: 447 GFLCPVHTPDGEPCGLLNHMTSTCRV-ASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSL 505
GFLCPVHTPDG PCGLLNH+ C++ S D G + +++ +G+
Sbjct: 537 GFLCPVHTPDGSPCGLLNHLAHKCKIETSNLDVSG-----------VPQIISNLGVTSES 585
Query: 506 PKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSL 565
++ + V +DGR++G + + LR KV +P +LE+GYVP S
Sbjct: 586 SVSLE----ESVVVQMDGRILGYCSPKQARIISDTLRYWKVEGNKSLPVELEIGYVPNSN 641
Query: 566 GGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRNA 624
G YPG+YLF+ + VRPV+ + L ++ +GPFEQ FMEI C P G
Sbjct: 642 RGQYPGIYLFSQCARMVRPVKYLPL-----DKLDYVGPFEQPFMEIACVPSDIISG---- 692
Query: 625 FPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYH 684
+TH E PT +LS+VAN+TP+SD NQSPRNMYQCQM KQ MG ++++R D KLY
Sbjct: 693 -VSTHVEFDPTYILSIVANMTPFSDFNQSPRNMYQCQMGKQAMGTPGTSIQYRTDNKLYR 751
Query: 685 LQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQI 744
LQT QTPIVR Y YG+D +P G NA+VAVL+YTGYDM+DAMI+N+S+ DRG G I
Sbjct: 752 LQTGQTPIVRPPLYNCYGLDNFPNGMNAVVAVLSYTGYDMDDAMIINRSAHDRGFGWGTI 811
Query: 745 YQTETIDLSDDGNKVDRGQ------KLFRRNKDA---KSLHSVIDSDGLPYVGQMIHPGE 795
Y+T+ L DD RG+ KLF +D DGLP++G + G
Sbjct: 812 YKTKVYSL-DDKESRGRGKAKREIAKLFGFAPGGLIKGEWRQTLDEDGLPHIGVRVTEGS 870
Query: 796 PYCSI----YDKTTNSWRTNSR-------KGSESVFVDYVAVDMKNSKNLP-QKANIRFR 843
+ +D +NS+ R K +E ++D V + + P Q +I++R
Sbjct: 871 IVAAWHTVRFDAVSNSYINIDRQTHFLKYKDTEEGYIDSVRILGSETGGDPCQAISIKYR 930
Query: 844 HTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLE 903
R P+IGDKFSSRHGQKGVCSQLWP IDMPFS +G++PD+IINPHAFPSRMTI M +E
Sbjct: 931 IPRKPVIGDKFSSRHGQKGVCSQLWPAIDMPFS-ESGIQPDVIINPHAFPSRMTIGMFVE 989
Query: 904 SVAAK 908
S+A K
Sbjct: 990 SLAGK 994
>gi|354471218|ref|XP_003497840.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 2
[Cricetulus griseus]
Length = 1079
Score = 678 bits (1749), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/905 (41%), Positives = 529/905 (58%), Gaps = 67/905 (7%)
Query: 12 LRELVRHHIESFDYMLDEGLSEMFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNF 71
L++L R H++SF+Y + EGLS H QA IS+ G P +
Sbjct: 35 LQDLTRAHVDSFNYAVLEGLS----HAVQADISWAVN------------GVPKGVIKQFL 78
Query: 72 GQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMV 131
G P+M+K++ C+L Q L+ EEA EMGGYFI+NG+E+V R +I+P++N+P++M+
Sbjct: 79 GYVPIMVKSKLCNLYNLPPQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMI 138
Query: 132 RSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLK 191
R ++ R GYT V + CVR++ S+V + L+Y+ NG+V L F + + + LP+G VLK
Sbjct: 139 RPKWKSRGLGYTHFGVSMHCVREEHSAVNMNLHYVENGTVMLNFIYRKELFFLPLGFVLK 198
Query: 192 ALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHI 251
ALV +D +IF L KG V +L V + +T+ Q L ++
Sbjct: 199 ALVSFSDYQIFQELI----------KGKEEDSFFKNSVSQMLRTVMEEGCSTQKQVLNYL 248
Query: 252 GEHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSD 311
GE F+ + + A+ + + I +HL + +KF LL M +KLF+L + D
Sbjct: 249 GERFRVKLSLPEWYPNEEAAKFLFNECICIHLKSDTEKFYLLCLMTRKLFALARGECMED 308
Query: 312 NPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVME 371
NPDSL NQE+L PG L ++LKEK+E+WL K + + + NL I +
Sbjct: 309 NPDSLVNQEVLTPGQLFLMFLKEKMENWLASIKIALDKRAQKTNVSINNENLLKIFSM-- 366
Query: 372 KNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFA 431
++ E +L TG L ++TGL Q +G V A++LNF+R++S FR VHRGA FA
Sbjct: 367 ---GTELTRPFEYLLATGNLRSKTGLGFLQDSGLCVVADKLNFIRYLSHFRCVHRGADFA 423
Query: 432 GLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTS 491
+RTT+VR+LLPESWGFLCPVHTPDG PCGLLNH+T+ C V + + S
Sbjct: 424 KMRTTTVRRLLPESWGFLCPVHTPDGAPCGLLNHLTAICEVVTKF----------VYTAS 473
Query: 492 ILRVLIGVGMIPSLPKLVKSGPPAVLS----VLLDGRVVGVIPSSEIEKVVAHLRRLKVS 547
+ +L G+G+ P V + P S VLLDG +VG + V LRR KV
Sbjct: 474 VPALLCGLGVTP-----VDATPCRPYSDCYPVLLDGVMVGWVDKELAPDVADTLRRFKVL 528
Query: 548 AASVIPDDLEVGYVPLSLGGA-YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQ 606
IP +EV VP++ + YPGL+LFT+P + VRPV+N+ L EE LIG EQ
Sbjct: 529 REKRIPPWMEVALVPMTGKPSLYPGLFLFTTPCRLVRPVQNLELGKEE-----LIGTMEQ 583
Query: 607 VFMEIRCPDGGDGGRRNAFP--ATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAK 664
+FM + + F +TH+E+ P +LSV+AN P+SDHNQSPRNMYQCQM K
Sbjct: 584 LFMNVAIFED------EVFSGISTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGK 637
Query: 665 QTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDM 724
QTMGF + + R+D KLY LQTPQ+P+VR Y Y +D YP GTNAIVAV++YTGYDM
Sbjct: 638 QTMGFPLLTFQDRSDNKLYRLQTPQSPLVRPCMYDYYSMDNYPIGTNAIVAVISYTGYDM 697
Query: 725 EDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGL 784
EDAMI+NK+S +RG HG +Y++E IDLS+ + + + D + + +D DGL
Sbjct: 698 EDAMIVNKASWERGFAHGSVYKSEFIDLSEKFKQGNDNLVFGIKPGDPRVMQK-LDDDGL 756
Query: 785 PYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFR 843
P++G + G+PY S + T K E+ VD + V ++ + K I R
Sbjct: 757 PFIGAKLQFGDPYYSYLNLNTGEGFVVYYKSKENCIVDNIKVCSNDTGSGKFKCICITIR 816
Query: 844 HTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLE 903
RNP IGDKF+SRHGQKG+ S+LWP DMPF+ +GM PD++ NPH FPSRMTI ML+E
Sbjct: 817 VPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTE-SGMVPDILFNPHGFPSRMTIGMLIE 875
Query: 904 SVAAK 908
S+A K
Sbjct: 876 SMAGK 880
>gi|389633795|ref|XP_003714550.1| DNA-directed RNA polymerase I subunit RPA2 [Magnaporthe oryzae
70-15]
gi|351646883|gb|EHA54743.1| DNA-directed RNA polymerase I subunit RPA2 [Magnaporthe oryzae
70-15]
Length = 1240
Score = 678 bits (1749), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/909 (42%), Positives = 553/909 (60%), Gaps = 71/909 (7%)
Query: 33 EMF-DHCRQAKISYTGKLMADVEFQYLDAG-SPVVRERFNFGQFPVMLKTRRCHLQGADS 90
E+F CR+ +SY GKL A E+Q + VR+ GQ P+M+K+ RCHL+G
Sbjct: 112 EIFPSECRERHVSYRGKLSATFEYQINNGELKECVRD---IGQMPIMVKSNRCHLEGNSP 168
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
LV KEE+ E+GGYFI+NG E++ R ++L ++N+P+++ R SF++R YT +++R
Sbjct: 169 ALLVQRKEESEELGGYFIVNGNEKIIRLLLLNRRNFPLAINRPSFQNRGPAYTPYGIILR 228
Query: 151 CVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYD 210
VR D++S T L+YL +G+V F + EYL+PV ++LKALV+TND EIF L
Sbjct: 229 SVRPDETSQTNVLHYLNDGNVTFRFSWRKNEYLVPVMMILKALVETNDSEIFEGLCGPPG 288
Query: 211 EKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAV 270
K VG+ +++RV+++L + L ++ + ++GE F+ V+ S S+Y V
Sbjct: 289 SK------GVGNSFLTDRVELLLRTYKSYGLYSKTKTRAYLGEKFRVVLGVQDSMSHYDV 342
Query: 271 AETVIRDYIFVHLNDNN-------DKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILL 323
++ + VHL ++ DKF +++ M++KL++LV DNPD++QNQEILL
Sbjct: 343 GTEFLKKIVLVHLGSHDVTEQEDADKFRMILVMMRKLYALVAGECAVDNPDAVQNQEILL 402
Query: 324 PGHLITIYLKEKLEDWLRKG-KKLIQDEIENNGKKFDFFNLANIKKVMEKN----PSKQI 378
G+L + LKE+LE+++ + ++D + + + F A +K N ++ +
Sbjct: 403 GGYLYGMILKERLEEFVAVSLRAALRDYLRRS--PANTFTSAAFEKDFPANIFRRTNENL 460
Query: 379 GTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSV 438
G S+E L TG L + +GLDLQQ +G+ V AE+LNFLRFIS FR VHRG+ FA L+TT+V
Sbjct: 461 GNSLEYFLSTGNLQSPSGLDLQQTSGFVVVAEKLNFLRFISHFRMVHRGSFFAQLKTTTV 520
Query: 439 RKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIG 498
RKLLPESWGFLCPVHTPDG PCGLLNH+ C++ + + D S +I R+
Sbjct: 521 RKLLPESWGFLCPVHTPDGSPCGLLNHLAHKCKIMT------DAVDVS----AIPRLATE 570
Query: 499 VGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEV 558
+G++ + + P V+LDG+++G + + LR KV + +P +E+
Sbjct: 571 LGVVDTSSADTEESVP----VMLDGKILGWCSPKQSRTIADTLRYWKVEGSHGVPVHMEI 626
Query: 559 GYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC--PDG 616
G VP S GG+YPG+Y+ + P + VRPV+ + L E+ +G EQ +M I C P+
Sbjct: 627 GLVPPSNGGSYPGIYMASQPSRMVRPVKYLPLEKED-----YVGTHEQPYMSIACTEPEI 681
Query: 617 GDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKF 676
G +TH E PT MLS++AN+TP+SD NQSPRNMYQCQM KQTMG A+
Sbjct: 682 VSG------ESTHVEFDPTNMLSILANMTPFSDFNQSPRNMYQCQMGKQTMGTPGAAISR 735
Query: 677 RADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVD 736
R D K+Y +QT QTPIVR + +YG D +P G NA+VAV++YTGYDM+DAMI+NKS+ +
Sbjct: 736 RTDNKMYRIQTGQTPIVRAPLHNEYGFDNFPNGMNAVVAVISYTGYDMDDAMIINKSAHE 795
Query: 737 RGMCHGQIYQTETIDLSDDG--NKVDRGQKLF----RRNKDAKSLHSVIDSDGLPYVGQM 790
RG HG IY+T+ I L DD K+F A+ L +D DGLP +G
Sbjct: 796 RGFGHGTIYKTKKITLKDDSRTRSTKHITKMFGFAPNTTVKARDLEK-LDLDGLPRIGSK 854
Query: 791 IHPGEPYCSIYDKTTN-SWRTNSRKG---------SESVFVDYV-AVDMKNSKNLPQKAN 839
+ G+ + + + + S + +R G SE+ FV+ + V +N Q +
Sbjct: 855 VEQGDIIAAWHTVSADYSDQLVNRDGLTHYEKYKDSETAFVEEIRLVGNENGTEPLQTVS 914
Query: 840 IRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIA 899
I+FR R+P+IGDKFSSRHGQKGV SQ WP IDMPFS +GM+PD+IINPHAFPSRMTI
Sbjct: 915 IKFRIPRSPVIGDKFSSRHGQKGVASQKWPMIDMPFS-ESGMQPDVIINPHAFPSRMTIG 973
Query: 900 MLLESVAAK 908
M +ES+A K
Sbjct: 974 MFVESLAGK 982
>gi|291386319|ref|XP_002709637.1| PREDICTED: RNA polymerase I polypeptide B isoform 1 [Oryctolagus
cuniculus]
Length = 1135
Score = 678 bits (1749), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 387/946 (40%), Positives = 530/946 (56%), Gaps = 93/946 (9%)
Query: 12 LRELVRHHIESFDYMLDEGLSEMFD----------------------------------- 36
L+EL R H+ESF+Y + EGL
Sbjct: 35 LQELTRAHVESFNYAVREGLGHAVQAIAPFEFAFKDERITLTIVDAVISPPTVPKGTICR 94
Query: 37 -------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGAD 89
CR + +Y GKL AD+ + V+++ G P+M+K++ C+L
Sbjct: 95 EFNVYPAECRGRRSTYRGKLTADISWAVNGTSKGVIKQFL--GHVPIMVKSKLCNLYNLS 152
Query: 90 SQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVI 149
Q L+ EEA EMGGYFI+NG+E+V R +I+P++N+P++MVR +R R GYT V +
Sbjct: 153 PQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMVRPKWRSRGPGYTQYGVSM 212
Query: 150 RCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY 209
CVR++ S+V + L+YL NG+V L F + + + LP+G LKALV +D +IF L
Sbjct: 213 HCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELI--- 269
Query: 210 DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYA 269
KG V +L V + T+ Q L ++GE F+ ++
Sbjct: 270 -------KGKEADSFFRNSVSQMLRIVAEEGCFTQKQVLNYLGECFRVKLNLPDWYPNEQ 322
Query: 270 VAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
AE + I +HL N +KF LL M +KLF+L + +NPDSL NQE+L PG L
Sbjct: 323 AAEFLFNQCICIHLKSNTEKFYLLCLMTRKLFALAKGECMEENPDSLVNQEVLTPGQLFL 382
Query: 330 IYLKEKLEDWLRKGKKLIQDEIENNGKKFDF-FNLANIKKVMEKNPSKQIGTSIETMLKT 388
++LKEK+E WL I+ ++ +K + N N+ KV + E +L T
Sbjct: 383 MFLKEKMEAWLTS----IKIALDKKAQKTNISINTENLLKVFSM--GADLTRPFEYLLAT 436
Query: 389 GRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGF 448
G L ++TGL Q +G V A++LNF+R++S FR VHRGA FA +RTT+VR+LLPESWGF
Sbjct: 437 GNLRSKTGLGFLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVRRLLPESWGF 496
Query: 449 LCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKL 508
LCPVHTPDGEPCGL+NH+T+ C V + + TSI +L +G+ P
Sbjct: 497 LCPVHTPDGEPCGLMNHLTAICEVVTQF----------VYTTSIPPLLCSLGVTP----- 541
Query: 509 VKSGPPAVLS----VLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLS 564
+ P S VLLDG +VG + + LR KV IP +EV VP++
Sbjct: 542 IDGAPHRPYSECYPVLLDGVMVGWVDKELAPGIADSLRLFKVLREKRIPPWMEVALVPMT 601
Query: 565 LGGA-YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRN 623
+ YPGLYLFT+P + VRPV+N+ L EE LIG EQ+F+ + +
Sbjct: 602 GKPSLYPGLYLFTTPCRLVRPVQNLELGKEE-----LIGTMEQLFLNVAIFED----EVL 652
Query: 624 AFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLY 683
A TH+E+ P MLSV+AN P+SDHNQSPRNMYQCQM KQTMGF + + R+D KLY
Sbjct: 653 AGVTTHQELFPHSMLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLY 712
Query: 684 HLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQ 743
LQTPQ+P+VR Y Y +D YP GTNAIVAV +YTGYDMEDAMI+NK+S +RG HG
Sbjct: 713 RLQTPQSPLVRPYMYDYYDMDNYPIGTNAIVAVTSYTGYDMEDAMIVNKASWERGFAHGS 772
Query: 744 IYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDK 803
+Y+TE IDLS+ + D + D + L +D DGLP++G + G+PY +
Sbjct: 773 VYKTEFIDLSEKIKQGDDSLVFGVKPGDPRILQR-LDDDGLPFIGTKLQYGDPYYGYLNL 831
Query: 804 TTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHTRNPIIGDKFSSRHGQKG 862
T K E+ VD + V ++ + K I R RNP IGDKF+SRHGQKG
Sbjct: 832 NTGESFVVYYKSKENCIVDNIKVCSNDTGSGKFKCICITMRVPRNPTIGDKFASRHGQKG 891
Query: 863 VCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
+ S+LWP DMPF+ +GM PD++ NPH FPSRMTI ML+ES+A K
Sbjct: 892 ILSRLWPVEDMPFTE-SGMVPDILFNPHGFPSRMTIGMLIESMAGK 936
>gi|403303875|ref|XP_003942544.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 3
[Saimiri boliviensis boliviensis]
Length = 1070
Score = 677 bits (1748), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 371/877 (42%), Positives = 522/877 (59%), Gaps = 49/877 (5%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR + +Y GKL AD+ + ++++ + G P+M+K++ C+L Q L+
Sbjct: 38 CRGRRSTYRGKLTADINWAVNGISKGIIKQ--SLGYVPIMVKSKLCNLYNLPPQALIEHH 95
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
EEA EMGGYFI+NG+E+V R +I+P++N+P++M+R ++ R GYT V + CVR++ S
Sbjct: 96 EEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWKTRGPGYTQYGVSMHCVREEHS 155
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
+V + L+YL NG+V L F + + + LP+G LKALV +D +IF L KE
Sbjct: 156 AVNMNLHYLENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELI------KGKED 209
Query: 218 GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRD 277
+ VS+ ++I++ E +T+ Q L ++GE F+ ++ AE ++
Sbjct: 210 DSFFRNSVSQMLRIVMEE----GCSTQKQVLNYLGECFRVKLNVPDWYPNEQAAEFLLNQ 265
Query: 278 YIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLE 337
I +HL N +KF +L M +KLF+L + DNPDSL NQE+L PG L ++LKEKLE
Sbjct: 266 CICIHLKSNTEKFYMLCLMTRKLFALAKGECMEDNPDSLVNQEVLTPGQLFLMFLKEKLE 325
Query: 338 DWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGL 397
WL K + + + NL I + + E +L TG L ++TGL
Sbjct: 326 GWLVSIKIAFDKKAQKTNVSMNTDNLMKIFTM-----GLDLTKPFEYLLATGNLRSKTGL 380
Query: 398 DLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDG 457
L Q +G V A++LNF+R++S FR VHRG+ FA +RTT+VR+LLPESWGFLCPVHTPDG
Sbjct: 381 GLLQESGLCVVADKLNFIRYLSHFRCVHRGSDFAKMRTTTVRRLLPESWGFLCPVHTPDG 440
Query: 458 EPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVL 517
EPCGL+NH+T+ C V + + TSI +L +G+ P V P
Sbjct: 441 EPCGLMNHLTAVCEVVTQF----------VYTTSIPALLCNLGVTP-----VDGAPHRPY 485
Query: 518 S----VLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGA-YPGL 572
S VLLDG +VG + + LR KV IP +EV +P++ + YPGL
Sbjct: 486 SECYPVLLDGVMVGWVDKELASGIADSLRHFKVLREKRIPPWMEVVLIPMTGKPSLYPGL 545
Query: 573 YLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEI 632
+LFT+P + VRPV+N+ L EE LIG EQ+FM + + A TH+E+
Sbjct: 546 FLFTTPCRLVRPVQNLELGKEE-----LIGTMEQIFMNVAIYED----EVFAGVTTHQEL 596
Query: 633 HPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPI 692
P +LSV+AN P+SDHNQSPRNMYQCQM KQTMGF + + R+D KLY LQTPQ+P+
Sbjct: 597 FPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTPQSPL 656
Query: 693 VRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDL 752
VR + Y Y +D YP GTNAIVAV++YTGYDMEDAMI+NK+S +RG HG +Y++E IDL
Sbjct: 657 VRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDL 716
Query: 753 SDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNS 812
S+ + D + D + L +D DGLP++G + G+PY S + T
Sbjct: 717 SEKIKQGDSSLVFGIKLGDPRVLQK-LDDDGLPFIGAKLQYGDPYYSYLNLNTGESFVMY 775
Query: 813 RKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDI 871
K E+ VD + V ++ + K I R RNP IGDKF+SRHGQKG+ S+LWP
Sbjct: 776 YKSKENCVVDNIKVCSNDTGSGKFKCVCITMRVPRNPTIGDKFASRHGQKGILSRLWPVE 835
Query: 872 DMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
DMPF+ +GM PD++ NPH FPSRMTI ML+ES+A K
Sbjct: 836 DMPFTE-SGMVPDILFNPHGFPSRMTIGMLIESMAGK 871
>gi|426336843|ref|XP_004031664.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 1
[Gorilla gorilla gorilla]
Length = 1135
Score = 677 bits (1748), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/941 (40%), Positives = 535/941 (56%), Gaps = 83/941 (8%)
Query: 12 LRELVRHHIESFDYMLDEGLS--------------------EMFD--------------- 36
L+EL R H+ESF+Y + EGL + D
Sbjct: 35 LQELTRAHVESFNYAVHEGLGLAVQAIPPFEFAFKDERISFTILDAVISPPTVPKGTICK 94
Query: 37 -------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGAD 89
CR + +Y GKL AD+ + ++++ G P+M+K++ C+L+
Sbjct: 95 EANVYPAECRGRRSTYRGKLTADINWAVNGISKGIIKQFL--GYVPIMVKSKLCNLRNLP 152
Query: 90 SQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVI 149
Q L+ EEA EMGGYFI+NG+E+V R +I+P++N+P++M+R ++ R GYT V +
Sbjct: 153 PQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWKTRGPGYTQYGVSM 212
Query: 150 RCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY 209
CVR++ S+V + L+YL NG+V L F + + + LP+G LKALV +D +IF L
Sbjct: 213 HCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELI--- 269
Query: 210 DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYA 269
KE + VS+ ++I++ E +T+ Q L ++GE F+ ++
Sbjct: 270 ---KGKEDDSFLRNSVSQMLRIVMEE----GCSTQKQVLNYLGECFRVKLNVPDWYPNEQ 322
Query: 270 VAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
AE + I +HL N +KF +L M +KLF+L + DNPDSL NQE+L PG L
Sbjct: 323 AAEFLFNQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMEDNPDSLVNQEVLTPGQLFL 382
Query: 330 IYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTG 389
++LKEKLE WL K + + + NL I + + E + TG
Sbjct: 383 MFLKEKLEGWLVSIKIAFDKKAQKTNVSMNTDNLMRIFAM-----GIDLTKPFEYLFATG 437
Query: 390 RLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFL 449
L ++TGL L Q +G V A++LNF+R++S FR VHRGA FA +RTT+VR+LLPESWGFL
Sbjct: 438 NLRSKTGLGLLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVRRLLPESWGFL 497
Query: 450 CPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLV 509
CPVHTPDGEPCGL+NH+T+ C V + + +I L +GV I P
Sbjct: 498 CPVHTPDGEPCGLMNHLTAVCEVVTQFVYTASI--------PALLCNLGVTPIDGAPHRS 549
Query: 510 KSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGA- 568
S VLLDG +VG + + LR KV IP +EV +P++ +
Sbjct: 550 YS---ECYPVLLDGVMVGWVDKDLAPGIADSLRHFKVLREKRIPPWMEVVLIPMTGKPSL 606
Query: 569 YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPAT 628
YPGL+LFT+P + VRPV+N+ L EE LIG EQ+FM + + A T
Sbjct: 607 YPGLFLFTTPCRLVRPVQNLELGKEE-----LIGTMEQIFMNVAIFED----EVFAGVTT 657
Query: 629 HEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTP 688
H+E+ P +LSV+AN P+SDHNQSPRNMYQCQM KQTMGF + + R+D KLY LQTP
Sbjct: 658 HQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTP 717
Query: 689 QTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTE 748
Q+P+VR + Y Y +D YP GTNAIVAV++YTGYDMEDAMI+NK+S +RG HG +Y++E
Sbjct: 718 QSPLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSE 777
Query: 749 TIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSW 808
IDLS+ + D + D + L +D DGLP++G + G+PY S + T
Sbjct: 778 FIDLSEKIKQGDTSLVFGIKPGDPRVLQK-LDDDGLPFIGAKLQYGDPYYSYLNLNTGES 836
Query: 809 RTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHTRNPIIGDKFSSRHGQKGVCSQL 867
K E+ VD + V ++ + K I R RNP IGDKF+SRHGQKG+ S+L
Sbjct: 837 FVMYYKSKENCVVDNIKVCSNDTGSGKFKCVCITMRVPRNPTIGDKFASRHGQKGILSRL 896
Query: 868 WPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
WP DMPF+ +GM PD++ NPH FPSRMTI ML+ES+A K
Sbjct: 897 WPAEDMPFTE-SGMVPDILFNPHGFPSRMTIGMLIESMAGK 936
>gi|332257258|ref|XP_003277726.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 2
[Nomascus leucogenys]
Length = 1079
Score = 677 bits (1748), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/903 (41%), Positives = 531/903 (58%), Gaps = 63/903 (6%)
Query: 12 LRELVRHHIESFDYMLDEGLSEMFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNF 71
L+EL R H+ESF+Y + EGL QA I++ ++ S + ++F
Sbjct: 35 LQELTRAHVESFNYAVHEGLGLAV----QADINWA-----------VNGISKGIIKQF-L 78
Query: 72 GQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMV 131
G P+M+K++ C+L Q L+ EEA EMGGYFI+NG+E+V R +I+P++N+P++M+
Sbjct: 79 GYVPIMVKSKLCNLHNLPPQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMI 138
Query: 132 RSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLK 191
R ++ R GYT V + CVR++ S+V + L+YL NG+V L F + + + LP+G LK
Sbjct: 139 RPKWKTRGPGYTQYGVSVHCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALK 198
Query: 192 ALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHI 251
ALV +D +IF L KE + VS+ ++I++ E +T+ Q L ++
Sbjct: 199 ALVSFSDYQIFQELI------KGKEDDSFLRNSVSQMLRIVMEE----GCSTQKQVLNYL 248
Query: 252 GEHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSD 311
GE F+ ++ AE + I +HL N +KF +L M +KLF+L + D
Sbjct: 249 GECFRVKLNVPDWYPNEQAAEFLFNQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMED 308
Query: 312 NPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVME 371
NPDSL NQE+L PG L ++LKEKLE WL K + + + NL I +
Sbjct: 309 NPDSLVNQEVLTPGQLFLMFLKEKLEGWLVSIKIAFDKKAQKTNVSMNTDNLMRIFTM-- 366
Query: 372 KNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFA 431
+ E + TG L ++TGL L Q +G V A++LNF+R++S FR VHRGA FA
Sbjct: 367 ---GIDLTKPFEYLFATGNLRSKTGLGLLQDSGLCVVADKLNFIRYLSHFRCVHRGADFA 423
Query: 432 GLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTS 491
+RTT+VR+LLPESWGFLCPVHTPDGEPCGL+NH+T+ C V + + S
Sbjct: 424 KMRTTTVRRLLPESWGFLCPVHTPDGEPCGLMNHLTAVCEVVTQF----------VYTAS 473
Query: 492 ILRVLIGVGMIPSLPKLVKSGPPAVLS----VLLDGRVVGVIPSSEIEKVVAHLRRLKVS 547
I +L +G+ P V P S VLLDG +VG + + LRR KV
Sbjct: 474 IPALLCNLGVTP-----VDGAPHRPYSECYPVLLDGVMVGWVDKEIAPGIADSLRRFKVL 528
Query: 548 AASVIPDDLEVGYVPLSLGGA-YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQ 606
IP +EV +P++ + YPGL+LFT+P + VRPV+N+ + EE LIG EQ
Sbjct: 529 REKRIPPWMEVVLIPMTGKPSLYPGLFLFTTPCRLVRPVQNLEMGKEE-----LIGTMEQ 583
Query: 607 VFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQT 666
+FM + + A TH+E+ P +LSV+AN P+SDHNQSPRNMYQCQM KQT
Sbjct: 584 IFMNVAIFED----EVFAGVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQT 639
Query: 667 MGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMED 726
MGF + + R+D KLY LQTPQ+P+VR + Y Y +D YP GTNAIVAV++YTGYDMED
Sbjct: 640 MGFPLLTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMED 699
Query: 727 AMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPY 786
AMI+NK+S +RG HG +Y++E IDLS+ + D + D + L +D DGLP+
Sbjct: 700 AMIVNKASWERGFAHGSVYKSEFIDLSEKIKQGDSSLVFGIKPGDPRVLQK-LDDDGLPF 758
Query: 787 VGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHT 845
+G + G+PY S + T K E+ VD + V ++ + K I R
Sbjct: 759 IGAKLQYGDPYYSYLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGKFKCVCITMRVP 818
Query: 846 RNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESV 905
RNP IGDKF+SRHGQKG+ S+LWP DMPF+ +GM PD++ NPH FPSRMTI ML+ES+
Sbjct: 819 RNPTIGDKFASRHGQKGILSRLWPAEDMPFTE-SGMVPDILFNPHGFPSRMTIGMLIESM 877
Query: 906 AAK 908
A K
Sbjct: 878 AGK 880
>gi|221044264|dbj|BAH13809.1| unnamed protein product [Homo sapiens]
Length = 1173
Score = 677 bits (1748), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/941 (40%), Positives = 536/941 (56%), Gaps = 83/941 (8%)
Query: 12 LRELVRHHIESFDYMLDEGLS--------------------EMFD--------------- 36
L+EL R H+ESF+Y + EGL + D
Sbjct: 73 LQELTRAHVESFNYAVHEGLGLAVQAIPPFEFAFKDERISFTILDAVISPPTVPKGTICK 132
Query: 37 -------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGAD 89
CR + +Y GKL AD+ + ++++ G P+M+K++ C+L+
Sbjct: 133 EANVYPAECRGRRSTYRGKLTADINWAVNGISKGIIKQFL--GYVPIMVKSKLCNLRNLP 190
Query: 90 SQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVI 149
Q L+ EEA EMGGYFI+NG+E+V R +I+P++N+P++M+R ++ R GYT V +
Sbjct: 191 PQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWKTRGPGYTQYGVSM 250
Query: 150 RCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY 209
CVR++ S+V + L+YL NG+V L F + + + LP+G LKALV +D +IF L
Sbjct: 251 HCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELI--- 307
Query: 210 DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYA 269
KE + VS+ ++I++ E +T+ Q L ++GE F+ ++
Sbjct: 308 ---KGKEDDSFLRNSVSQMLRIVMEE----GCSTQKQVLNYLGECFRVKLNVPDWYPNEQ 360
Query: 270 VAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
AE + I +HL N +KF +L M +KLF+L + DNPDSL NQE+L PG L
Sbjct: 361 AAEFLFNQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMEDNPDSLVNQEVLTPGQLFL 420
Query: 330 IYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTG 389
++LKEKLE WL K + + + NL I + + E + TG
Sbjct: 421 MFLKEKLEGWLVSIKIAFDKKAQKTSVSMNTDNLMRIFTM-----GIDLTKPFEYLFATG 475
Query: 390 RLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFL 449
L ++TGL L Q +G V A++LNF+R++S FR VHRGA FA +RTT+VR+LLPESWGFL
Sbjct: 476 NLRSKTGLGLLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVRRLLPESWGFL 535
Query: 450 CPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLV 509
CPVHTPDGEPCGL+NH+T+ C V + + +I L +GV I P
Sbjct: 536 CPVHTPDGEPCGLMNHLTAVCEVVTQFVYTASI--------PALLCNLGVTPIDGAPHRS 587
Query: 510 KSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGA- 568
S VLLDG +VG + + LR KV IP +EV +P++ +
Sbjct: 588 YS---ECYPVLLDGVMVGWVDKDLAPGIADSLRHFKVLREKRIPPWMEVVLIPMTGKPSL 644
Query: 569 YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPAT 628
YPGL+LFT+P + VRPV+N++L EE LIG EQ+FM + + A T
Sbjct: 645 YPGLFLFTTPCRLVRPVQNLALGKEE-----LIGTMEQIFMNVAIFED----EVFAGVTT 695
Query: 629 HEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTP 688
H+E+ P +LSV+AN P+SDHNQSPRNMYQCQM KQTMGF + + R+D KLY LQTP
Sbjct: 696 HQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTP 755
Query: 689 QTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTE 748
Q+P+VR + Y Y +D YP GTNAIVAV++YTGYDMEDAMI+NK+S +RG HG +Y++E
Sbjct: 756 QSPLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSE 815
Query: 749 TIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSW 808
IDLS+ + D + D + L +D DGLP++G + G+PY S + T
Sbjct: 816 FIDLSEKIKQGDSSLVFGIKPGDPRVLQK-LDDDGLPFIGAKLQYGDPYYSYLNLNTGES 874
Query: 809 RTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHTRNPIIGDKFSSRHGQKGVCSQL 867
K E+ VD + V ++ + K I R RNP IGDKF+SRHGQKG+ S+L
Sbjct: 875 FVMYYKSKENCVVDNIKVCSNDTGSGKFKCVCITMRVPRNPTIGDKFASRHGQKGILSRL 934
Query: 868 WPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
WP DMPF+ +GM PD++ NPH FPSRMTI ML+ES+A K
Sbjct: 935 WPAEDMPFTE-SGMVPDILFNPHGFPSRMTIGMLIESMAGK 974
>gi|114579600|ref|XP_001145399.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 8
[Pan troglodytes]
gi|410228170|gb|JAA11304.1| polymerase (RNA) I polypeptide B, 128kDa [Pan troglodytes]
gi|410261860|gb|JAA18896.1| polymerase (RNA) I polypeptide B, 128kDa [Pan troglodytes]
gi|410261862|gb|JAA18897.1| polymerase (RNA) I polypeptide B, 128kDa [Pan troglodytes]
gi|410303046|gb|JAA30123.1| polymerase (RNA) I polypeptide B, 128kDa [Pan troglodytes]
gi|410303048|gb|JAA30124.1| polymerase (RNA) I polypeptide B, 128kDa [Pan troglodytes]
Length = 1135
Score = 677 bits (1748), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/941 (40%), Positives = 534/941 (56%), Gaps = 83/941 (8%)
Query: 12 LRELVRHHIESFDYMLDEGLS--------------------EMFD--------------- 36
L+EL R H+ESF+Y + EGL + D
Sbjct: 35 LQELTRAHVESFNYAVHEGLGLAVQAIPPFEFAFKDERISFTILDAVISPPTVPKGTICK 94
Query: 37 -------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGAD 89
CR + +Y GKL AD+ + ++++ G P+M+K++ C+L+
Sbjct: 95 EANVYPAECRGRRSTYRGKLTADINWAVNGISKGIIKQFL--GYVPIMVKSKLCNLRNLP 152
Query: 90 SQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVI 149
Q L+ EEA EMGGYFI+NG+E+V R +I+P++N+P++M+R ++ R GYT V +
Sbjct: 153 PQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWKTRGPGYTQYGVSM 212
Query: 150 RCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY 209
CVR++ S+V + L+YL NG+V L F + + + LP+G LKALV +D +IF L
Sbjct: 213 HCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELI--- 269
Query: 210 DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYA 269
KE + VS+ ++I++ E T+ Q L ++GE F+ ++
Sbjct: 270 ---KGKEDDSFLRNSVSQMLRIVMEE----GCLTQKQVLNYLGECFRVKLNVPDWYPNEQ 322
Query: 270 VAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
AE + I +HL N +KF +L M +KLF+L + DNPDSL NQE+L PG L
Sbjct: 323 AAEFLFNQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMEDNPDSLVNQEVLTPGQLFL 382
Query: 330 IYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTG 389
++LKEKLE WL K + + + NL I + + E + TG
Sbjct: 383 MFLKEKLEGWLVSIKIAFDKKAQKTSVSMNTDNLMKIFTM-----GIDLTKPFEYLFATG 437
Query: 390 RLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFL 449
L ++TGL L Q +G V A++LNF+R++S FR VHRGA FA +RTT+VR+LLPESWGFL
Sbjct: 438 NLRSKTGLGLLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVRRLLPESWGFL 497
Query: 450 CPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLV 509
CPVHTPDGEPCGL+NH+T+ C V + + +I L +GV I P
Sbjct: 498 CPVHTPDGEPCGLMNHLTAVCEVVTQFVYTASI--------PALLCNLGVTPIDGAPHRS 549
Query: 510 KSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGA- 568
S VLLDG +VG + + LR KV IP +EV +P++ +
Sbjct: 550 YS---ECYPVLLDGVMVGWVDKDLAPGIADSLRHFKVLREKRIPPWMEVVLIPMTGKPSL 606
Query: 569 YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPAT 628
YPGL+LFT+P + VRPV+N+ L EE LIG EQ+FM + + A T
Sbjct: 607 YPGLFLFTTPCRLVRPVQNLELGKEE-----LIGTMEQIFMNVAIFED----EVFAGVTT 657
Query: 629 HEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTP 688
H+E+ P +LSV+AN P+SDHNQSPRNMYQCQM KQTMGF + + R+D KLY LQTP
Sbjct: 658 HQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPILTYQDRSDNKLYRLQTP 717
Query: 689 QTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTE 748
Q+P+VR + Y Y +D YP GTNAIVAV++YTGYDMEDAMI+NK+S +RG HG +Y++E
Sbjct: 718 QSPLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSE 777
Query: 749 TIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSW 808
IDLS+ + D + D + L +D DGLP++G + G+PY S + T
Sbjct: 778 FIDLSEKIKQGDSSLVFGIKPGDPRVLQK-LDDDGLPFIGAKLQYGDPYYSYLNLNTGES 836
Query: 809 RTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHTRNPIIGDKFSSRHGQKGVCSQL 867
K E+ VD + V ++ + K I R RNP IGDKF+SRHGQKG+ S+L
Sbjct: 837 FVMYYKSKENCVVDNIKVCSNDTGSGKFKCVCITMRVPRNPTIGDKFASRHGQKGILSRL 896
Query: 868 WPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
WP DMPF+ +GM PD++ NPH FPSRMTI ML+ES+A K
Sbjct: 897 WPAEDMPFTE-SGMVPDILFNPHGFPSRMTIGMLIESMAGK 936
>gi|75062001|sp|Q5REE8.1|RPA2_PONAB RecName: Full=DNA-directed RNA polymerase I subunit RPA2; Short=RNA
polymerase I subunit 2; AltName: Full=RPA135
gi|55726171|emb|CAH89859.1| hypothetical protein [Pongo abelii]
Length = 1136
Score = 677 bits (1747), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 383/941 (40%), Positives = 533/941 (56%), Gaps = 83/941 (8%)
Query: 12 LRELVRHHIESFDYMLDEGLS--------------------EMFD--------------- 36
L+EL R H+ESF+Y + EGL + D
Sbjct: 35 LQELTRAHVESFNYAVHEGLGLAVQAIPPFEFAFKDERISFTILDAVISPPTVPKGTICK 94
Query: 37 -------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGAD 89
CR + +Y GKL AD+ + ++++ G P+M+K++ C+L
Sbjct: 95 EVSVYPAECRGRRCTYRGKLTADISWAVNGISKGIIKQFL--GYVPIMVKSKLCNLYNLP 152
Query: 90 SQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVI 149
Q L+ EEA EMGGYFI+NG+E+V R +I+P++N+P++MVR ++ R GYT V +
Sbjct: 153 PQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMVRPKWKTRGPGYTHYGVSM 212
Query: 150 RCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY 209
CVR++ S+V + L+YL NG+V L F + + + LP+G LKALV +D +IF L
Sbjct: 213 HCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELI--- 269
Query: 210 DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYA 269
KE + VS+ ++I++ E +T+ Q L ++GE F+ ++
Sbjct: 270 ---KGKEDDSFLRNSVSQMLRIVMEE----GCSTQKQVLNYLGECFRVKLNVPDWYPNEQ 322
Query: 270 VAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
AE + I +HL N +KF +L M +KLF+L + DNPDSL NQE+L PG L
Sbjct: 323 AAEFLFNQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMEDNPDSLVNQEVLTPGQLFL 382
Query: 330 IYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTG 389
++LKEKLE WL K + + + NL I + + E + TG
Sbjct: 383 MFLKEKLEGWLVSIKIAFDKKAQKTNVSMNTDNLMRIFTM-----GIDLTKPFEYLFATG 437
Query: 390 RLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFL 449
L ++TGL L Q +G V A++LNF+R++S FR VHRGA FA +RTT+VR+LLPESWGFL
Sbjct: 438 NLRSKTGLGLLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVRRLLPESWGFL 497
Query: 450 CPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLV 509
CPVHTPDGEPCGL+NH+T+ C V + + +I L +GV I P
Sbjct: 498 CPVHTPDGEPCGLMNHLTAVCEVVTQFVYTASI--------PALLCNLGVTPIDGAPHRS 549
Query: 510 KSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGA- 568
S VLLDG +VG + + LR KV IP EV +P++ +
Sbjct: 550 YS---ECYPVLLDGVMVGWVDKELAPGIADSLRHFKVLREKRIPPWTEVVLIPMTGKPSL 606
Query: 569 YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPAT 628
YPGL+LFT+P + VRPV+N+ L EE LIG EQ+FM + + A T
Sbjct: 607 YPGLFLFTTPCRLVRPVQNLELGKEE-----LIGTMEQIFMNVAIFED----EVFAGVTT 657
Query: 629 HEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTP 688
H+E+ P +LSV+AN P+SDHNQSPRNMYQCQM KQTMGF + + R+D KLY LQTP
Sbjct: 658 HQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTP 717
Query: 689 QTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTE 748
Q+P+VR + Y Y +D YP GTNAIVAV++YTGYDMEDAMI+NK+S +RG HG +Y++E
Sbjct: 718 QSPLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSE 777
Query: 749 TIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSW 808
IDLS+ + D + D + L +D DGLP++G + G+PY S + T
Sbjct: 778 FIDLSEKIKQGDSSLVFGMKPGDPRILQK-LDDDGLPFIGAKLQYGDPYYSYLNLNTGES 836
Query: 809 RTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHTRNPIIGDKFSSRHGQKGVCSQL 867
K E+ VD + V ++ + K I R RNP IGDKF+SRHGQKG+ S+L
Sbjct: 837 FVMYYKSKENCVVDNIKVCSNDTGSGKFKCVCITMRVPRNPTIGDKFASRHGQKGILSRL 896
Query: 868 WPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
WP DMPF+ +GM PD++ NPH FPSRMTI ML+ES+A K
Sbjct: 897 WPAEDMPFTE-SGMVPDILFNPHGFPSRMTIGMLIESMAGK 936
>gi|207457737|ref|NP_001128800.1| DNA-directed RNA polymerase I subunit RPA2 [Pongo abelii]
Length = 1135
Score = 677 bits (1747), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 383/941 (40%), Positives = 533/941 (56%), Gaps = 83/941 (8%)
Query: 12 LRELVRHHIESFDYMLDEGLS--------------------EMFD--------------- 36
L+EL R H+ESF+Y + EGL + D
Sbjct: 35 LQELTRAHVESFNYAVHEGLGLAVQAIPPFEFAFKDERISFTILDAVISPPTVPKGTICK 94
Query: 37 -------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGAD 89
CR + +Y GKL AD+ + ++++ G P+M+K++ C+L
Sbjct: 95 EVSVYPAECRGRRCTYRGKLTADISWAVNGISKGIIKQFL--GYVPIMVKSKLCNLYNLP 152
Query: 90 SQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVI 149
Q L+ EEA EMGGYFI+NG+E+V R +I+P++N+P++MVR ++ R GYT V +
Sbjct: 153 PQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMVRPKWKTRGPGYTHYGVSM 212
Query: 150 RCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY 209
CVR++ S+V + L+YL NG+V L F + + + LP+G LKALV +D +IF L
Sbjct: 213 HCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELI--- 269
Query: 210 DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYA 269
KE + VS+ ++I++ E +T+ Q L ++GE F+ ++
Sbjct: 270 ---KGKEDDSFLRNSVSQMLRIVMEE----GCSTQKQVLNYLGECFRVKLNVPDWYPNEQ 322
Query: 270 VAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
AE + I +HL N +KF +L M +KLF+L + DNPDSL NQE+L PG L
Sbjct: 323 AAEFLFNQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMEDNPDSLVNQEVLTPGQLFL 382
Query: 330 IYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTG 389
++LKEKLE WL K + + + NL I + + E + TG
Sbjct: 383 MFLKEKLEGWLVSIKIAFDKKAQKTNVSMNTDNLMRIFTM-----GIDLTKPFEYLFATG 437
Query: 390 RLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFL 449
L ++TGL L Q +G V A++LNF+R++S FR VHRGA FA +RTT+VR+LLPESWGFL
Sbjct: 438 NLRSKTGLGLLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVRRLLPESWGFL 497
Query: 450 CPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLV 509
CPVHTPDGEPCGL+NH+T+ C V + + +I L +GV I P
Sbjct: 498 CPVHTPDGEPCGLMNHLTAVCEVVTQFVYTASI--------PALLCNLGVTPIDGAPHRS 549
Query: 510 KSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGA- 568
S VLLDG +VG + + LR KV IP EV +P++ +
Sbjct: 550 YS---ECYPVLLDGVMVGWVDKELAPGIADSLRHFKVLREKRIPPWTEVVLIPMTGKPSL 606
Query: 569 YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPAT 628
YPGL+LFT+P + VRPV+N+ L EE LIG EQ+FM + + A T
Sbjct: 607 YPGLFLFTTPCRLVRPVQNLELGKEE-----LIGTMEQIFMNVAIFED----EVFAGVTT 657
Query: 629 HEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTP 688
H+E+ P +LSV+AN P+SDHNQSPRNMYQCQM KQTMGF + + R+D KLY LQTP
Sbjct: 658 HQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTP 717
Query: 689 QTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTE 748
Q+P+VR + Y Y +D YP GTNAIVAV++YTGYDMEDAMI+NK+S +RG HG +Y++E
Sbjct: 718 QSPLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSE 777
Query: 749 TIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSW 808
IDLS+ + D + D + L +D DGLP++G + G+PY S + T
Sbjct: 778 FIDLSEKIKQGDSSLVFGMKPGDPRILQK-LDDDGLPFIGAKLQYGDPYYSYLNLNTGES 836
Query: 809 RTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHTRNPIIGDKFSSRHGQKGVCSQL 867
K E+ VD + V ++ + K I R RNP IGDKF+SRHGQKG+ S+L
Sbjct: 837 FVMYYKSKENCVVDNIKVCSNDTGSGKFKCVCITMRVPRNPTIGDKFASRHGQKGILSRL 896
Query: 868 WPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
WP DMPF+ +GM PD++ NPH FPSRMTI ML+ES+A K
Sbjct: 897 WPAEDMPFTE-SGMVPDILFNPHGFPSRMTIGMLIESMAGK 936
>gi|154152065|ref|NP_001093762.1| DNA-directed RNA polymerase I subunit RPA2 [Bos taurus]
gi|151553633|gb|AAI48065.1| POLR1B protein [Bos taurus]
gi|296482453|tpg|DAA24568.1| TPA: DNA-directed RNA polymerase I subunit RPA2 [Bos taurus]
Length = 1135
Score = 677 bits (1747), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 384/946 (40%), Positives = 532/946 (56%), Gaps = 93/946 (9%)
Query: 12 LRELVRHHIESFDYMLDEGLSEMFD----------------------------------- 36
L+EL R H+ESF+Y + EGLS
Sbjct: 35 LQELTRAHVESFNYAVREGLSHAVQAVPPFEFAFKDERICLTIVDAVISPPAVPKGSICK 94
Query: 37 -------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGAD 89
CR + +Y GKL AD+ + V+++ G P+M+K++ C+L
Sbjct: 95 ELNVYPAECRGRRSTYRGKLTADISWSVNGISKGVIKQFL--GYVPIMVKSKLCNLYNLP 152
Query: 90 SQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVI 149
+ L+ EEA EMGGYFI+NG+E+V R +I+P++N+P++MVR ++ R GYT V +
Sbjct: 153 PKALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMVRPKWKSRGPGYTQYGVSM 212
Query: 150 RCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY 209
CVR++ S+V + L+YL NG+V L F + + + LP+G LKALV +D +IF L
Sbjct: 213 HCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELI--- 269
Query: 210 DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYA 269
KE + VS+ ++I++ E +T+ Q L ++GE F+ +
Sbjct: 270 ---KGKEDDSFFRNSVSQMLRIVMEE----GCSTQKQVLNYLGERFRVKLSLPDWYPNEQ 322
Query: 270 VAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
AE + I +HL N +KF +L M +KLF+L + +NPDSL NQE+L PG L
Sbjct: 323 AAEFLFNQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMEENPDSLMNQEVLTPGQLFL 382
Query: 330 IYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTG 389
++LKEKLE WL K I + + + NL I + + E +L TG
Sbjct: 383 MFLKEKLEAWLVSIKIAIDKKSQKTNVSLNSENLMKIFSL-----GIDLTKPFEYLLATG 437
Query: 390 RLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFL 449
L ++TGL Q +G V A++LNF+R++S FR VHRGA FA +RTT+VR+LLPESWGFL
Sbjct: 438 NLRSKTGLGFLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVRRLLPESWGFL 497
Query: 450 CPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLV 509
CPVHTPDGEPCGL+NH+T+ C V + S SI +L +G+ P
Sbjct: 498 CPVHTPDGEPCGLMNHLTAICEVVTQ----------SVYTASIPALLCNLGVTPV----- 542
Query: 510 KSGPP-----AVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLS 564
G P VLLDG ++G + LR KV IP +EV +P++
Sbjct: 543 -DGTPHRPYSECYPVLLDGVMIGWADKEIAPGIADSLRHFKVLREKRIPPWMEVALIPMT 601
Query: 565 LGGA-YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRN 623
+ YPGLYLFT+P + VRPV+N+ L EE LIG EQ+FM + +
Sbjct: 602 GKPSLYPGLYLFTTPCRLVRPVQNLELGKEE-----LIGTMEQIFMNVAIFED----EVL 652
Query: 624 AFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLY 683
A TH+E+ P +LSV+AN P+SDHNQSPRNMYQCQM KQTMGF + + R+D KLY
Sbjct: 653 AGVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTFQDRSDNKLY 712
Query: 684 HLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQ 743
LQTPQ+P+VR Y Y +D YP GTNAIVAV++YTGYDMEDAMI+NK+S +RG HG
Sbjct: 713 RLQTPQSPLVRPYMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGS 772
Query: 744 IYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDK 803
+Y++E IDLS+ + D + D + L +D+DGLP++G + G+PY S +
Sbjct: 773 VYKSEFIDLSERIKQGDDSLVFGVKPGDPRVLQK-LDNDGLPFIGAQLKYGDPYYSYLNL 831
Query: 804 TTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHTRNPIIGDKFSSRHGQKG 862
T K E+ VD + V ++ K I R RNP IGDKF+SRHGQKG
Sbjct: 832 NTGEGFVMYYKSKENCIVDNIKVCSNDTGTGKFKCVCITMRVPRNPTIGDKFASRHGQKG 891
Query: 863 VCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
+ S+LWP DMPF+ +GM PD++ NPH FPSRMTI ML+ES+A K
Sbjct: 892 ILSRLWPVEDMPFTE-SGMVPDILFNPHGFPSRMTIGMLIESMAGK 936
>gi|212286172|ref|NP_001131076.1| DNA-directed RNA polymerase I subunit RPA2 isoform 2 [Homo sapiens]
gi|119593996|gb|EAW73590.1| polymerase (RNA) I polypeptide B, 128kDa, isoform CRA_a [Homo
sapiens]
Length = 1079
Score = 677 bits (1746), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/903 (41%), Positives = 532/903 (58%), Gaps = 63/903 (6%)
Query: 12 LRELVRHHIESFDYMLDEGLSEMFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNF 71
L+EL R H+ESF+Y + EGL QA I++ ++ S + ++F
Sbjct: 35 LQELTRAHVESFNYAVHEGLGLAV----QADINWA-----------VNGISKGIIKQF-L 78
Query: 72 GQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMV 131
G P+M+K++ C+L+ Q L+ EEA EMGGYFI+NG+E+V R +I+P++N+P++M+
Sbjct: 79 GYVPIMVKSKLCNLRNLPPQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMI 138
Query: 132 RSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLK 191
R ++ R GYT V + CVR++ S+V + L+YL NG+V L F + + + LP+G LK
Sbjct: 139 RPKWKTRGPGYTQYGVSMHCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALK 198
Query: 192 ALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHI 251
ALV +D +IF L KE + VS+ ++I++ E +T+ Q L ++
Sbjct: 199 ALVSFSDYQIFQELI------KGKEDDSFLRNSVSQMLRIVMEE----GCSTQKQVLNYL 248
Query: 252 GEHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSD 311
GE F+ ++ AE + I +HL N +KF +L M +KLF+L + D
Sbjct: 249 GECFRVKLNVPDWYPNEQAAEFLFNQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMED 308
Query: 312 NPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVME 371
NPDSL NQE+L PG L ++LKEKLE WL K + + + NL I +
Sbjct: 309 NPDSLVNQEVLTPGQLFLMFLKEKLEGWLVSIKIAFDKKAQKTSVSMNTDNLMRIFTM-- 366
Query: 372 KNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFA 431
+ E + TG L ++TGL L Q +G V A++LNF+R++S FR VHRGA FA
Sbjct: 367 ---GIDLTKPFEYLFATGNLRSKTGLGLLQDSGLCVVADKLNFIRYLSHFRCVHRGADFA 423
Query: 432 GLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTS 491
+RTT+VR+LLPESWGFLCPVHTPDGEPCGL+NH+T+ C V + + S
Sbjct: 424 KMRTTTVRRLLPESWGFLCPVHTPDGEPCGLMNHLTAVCEVVTQF----------VYTAS 473
Query: 492 ILRVLIGVGMIPSLPKLVKSGPPAVLS----VLLDGRVVGVIPSSEIEKVVAHLRRLKVS 547
I +L +G+ P + P S VLLDG +VG + + LR KV
Sbjct: 474 IPALLCNLGVTP-----IDGAPHRSYSECYPVLLDGVMVGWVDKDLAPGIADSLRHFKVL 528
Query: 548 AASVIPDDLEVGYVPLSLGGA-YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQ 606
IP +EV +P++ + YPGL+LFT+P + VRPV+N++L EE LIG EQ
Sbjct: 529 REKRIPPWMEVVLIPMTGKPSLYPGLFLFTTPCRLVRPVQNLALGKEE-----LIGTMEQ 583
Query: 607 VFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQT 666
+FM + + A TH+E+ P +LSV+AN P+SDHNQSPRNMYQCQM KQT
Sbjct: 584 IFMNVAIFED----EVFAGVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQT 639
Query: 667 MGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMED 726
MGF + + R+D KLY LQTPQ+P+VR + Y Y +D YP GTNAIVAV++YTGYDMED
Sbjct: 640 MGFPLLTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMED 699
Query: 727 AMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPY 786
AMI+NK+S +RG HG +Y++E IDLS+ + D + D + L +D DGLP+
Sbjct: 700 AMIVNKASWERGFAHGSVYKSEFIDLSEKIKQGDSSLVFGIKPGDPRVLQK-LDDDGLPF 758
Query: 787 VGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHT 845
+G + G+PY S + T K E+ VD + V ++ + K I R
Sbjct: 759 IGAKLQYGDPYYSYLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGKFKCVCITMRVP 818
Query: 846 RNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESV 905
RNP IGDKF+SRHGQKG+ S+LWP DMPF+ +GM PD++ NPH FPSRMTI ML+ES+
Sbjct: 819 RNPTIGDKFASRHGQKGILSRLWPAEDMPFTE-SGMVPDILFNPHGFPSRMTIGMLIESM 877
Query: 906 AAK 908
A K
Sbjct: 878 AGK 880
>gi|402891932|ref|XP_003909182.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 1
[Papio anubis]
Length = 1135
Score = 676 bits (1745), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/945 (40%), Positives = 536/945 (56%), Gaps = 91/945 (9%)
Query: 12 LRELVRHHIESFDYMLDEGLS--------------------EMFD--------------- 36
L+EL R H+ESF+Y + EGL + D
Sbjct: 35 LQELTRAHVESFNYAVHEGLGLAVQAIPPFEFAFKDERISFTILDAVISPPTVPKGTICK 94
Query: 37 -------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGAD 89
CR + +Y GKL AD+ + ++++ G P+M+K++ C+L
Sbjct: 95 EVSVYPAECRGRRSTYRGKLTADINWAVNGISKGIIKQ--CLGYVPIMVKSKLCNLHSLP 152
Query: 90 SQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVI 149
Q L+ EEA EMGGYFI+NG+E+V R +I+P++N+P++M+R ++ R GYT V +
Sbjct: 153 PQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWKTRGPGYTQYGVSM 212
Query: 150 RCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY 209
CVR++ S+V + L+YL NG+V L F + + + LP+G LKALV +D +IF L
Sbjct: 213 HCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELI--- 269
Query: 210 DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYA 269
KE + VS+ ++I++ E +T+ Q L ++GE F+ ++
Sbjct: 270 ---KGKEDDSFLRNSVSQMLRIVMEE----GCSTQKQVLNYLGECFRVKLNVPDWYPNEQ 322
Query: 270 VAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
AE + I +HL + +KF +L M +KLF+L + DNPDSL NQE+L PG L
Sbjct: 323 AAEFLFNQCICIHLKSSTEKFYMLCLMTRKLFALAKGECMEDNPDSLVNQEVLTPGQLFL 382
Query: 330 IYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTG 389
++LKEKLE WL K + + + NL I + + E + TG
Sbjct: 383 MFLKEKLEGWLVSIKIAFDKKAQKTNVSMNTDNLMRIFTM-----GIDLTKPFEYLFATG 437
Query: 390 RLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFL 449
L ++TGL L Q +G V A++LNF+R++S FR VHRGA FA +RTT+VR+LLPESWGFL
Sbjct: 438 NLRSKTGLGLLQNSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVRRLLPESWGFL 497
Query: 450 CPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLV 509
CPVHTPDGEPCGL+NH+T+ C V + + SI +L +G+ P V
Sbjct: 498 CPVHTPDGEPCGLMNHLTAVCEVVTQF----------VYTASIPALLCNLGVTP-----V 542
Query: 510 KSGPPAVLS----VLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSL 565
P S VLLDG +VG + + LR KV IP +EV +P++
Sbjct: 543 DGAPHRPYSECYPVLLDGVMVGWVDKELAPGIADSLRHFKVLREKRIPPWMEVVLIPMTG 602
Query: 566 GGA-YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNA 624
+ YPGL+LFT+P + VRPV+N+ L EE LIG EQ+FM + + A
Sbjct: 603 KPSLYPGLFLFTTPCRLVRPVQNLELGKEE-----LIGTMEQIFMNVAIFED----EVFA 653
Query: 625 FPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYH 684
TH+E+ P +LSV+AN P+SDHNQSPRNMYQCQM KQTMGF + + R+D KLY
Sbjct: 654 GVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYR 713
Query: 685 LQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQI 744
LQTPQ+P+VR + Y Y +D YP GTNAIVAV++YTGYDMEDAMI+NK+S +RG HG +
Sbjct: 714 LQTPQSPLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSV 773
Query: 745 YQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKT 804
Y++E IDLS+ + D + D + L +D DGLP++G + G+PY S +
Sbjct: 774 YKSEFIDLSEKIKQGDSSLVFGIKPGDPRVLQK-LDDDGLPFIGAKLQYGDPYYSYLNLN 832
Query: 805 TNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHTRNPIIGDKFSSRHGQKGV 863
T K E+ VD + V ++ + K I R RNP IGDKF+SRHGQKG+
Sbjct: 833 TGESFVMYYKSKENCVVDNIKVCSNDTGSGKFKCVCITMRVPRNPTIGDKFASRHGQKGI 892
Query: 864 CSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
S+LWP DMPF+ +GM PD++ NPH FPSRMTI ML+ES+A K
Sbjct: 893 LSRLWPAEDMPFTE-SGMVPDILFNPHGFPSRMTIGMLIESMAGK 936
>gi|338713979|ref|XP_003362991.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 [Equus
caballus]
Length = 1079
Score = 676 bits (1745), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/904 (42%), Positives = 531/904 (58%), Gaps = 65/904 (7%)
Query: 12 LRELVRHHIESFDYMLDEGLSEMFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNF 71
L+EL R H+ESF+Y + EGLS H QA IS++ G P +
Sbjct: 35 LQELTRAHVESFNYAVREGLS----HAVQADISWSVN------------GIPKGIIKQFL 78
Query: 72 GQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMV 131
G P+M+K++ C+L + L+ EEA EMGGYFI+NG+E+V R +I+P++N+P+++
Sbjct: 79 GYVPIMVKSKLCNLYNLPPRALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIALT 138
Query: 132 RSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLK 191
R ++ R GYT V + CVR++ S+V + L+YL NG+V L F + + + LP+G LK
Sbjct: 139 RPKWKTRGPGYTQYGVSMHCVREEHSAVNMNLHYLENGTVMLNFVYRKELFFLPLGFALK 198
Query: 192 ALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHI 251
ALV +D +IF L KE + VS+ ++I+ E +T+ Q L ++
Sbjct: 199 ALVSFSDYQIFQELI------KGKEDDSFFRNSVSQMLRIVTEE----GCSTQKQVLNYL 248
Query: 252 GEHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSD 311
GE F+ ++ AE + I +HL N +KF +L M +KLF+L + +
Sbjct: 249 GERFRVKLNLPDWYPDAQAAEFLFNQCICIHLKSNTEKFYVLCLMTRKLFALAKGECMEE 308
Query: 312 NPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDF-FNLANIKKVM 370
NPDSL NQE+L PG L ++LKEK+E WL I+ ++ +K D N N+ K+
Sbjct: 309 NPDSLVNQEVLTPGQLFLMFLKEKMEAWLVS----IKIALDKKAQKTDVSINTDNLMKIF 364
Query: 371 EKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASF 430
N + E +L TG L ++TGL Q +G V A++LNF+R++S FR VHRGA F
Sbjct: 365 --NLGTDLTKPFEYLLATGNLRSKTGLGFLQDSGLCVVADKLNFIRYLSHFRCVHRGADF 422
Query: 431 AGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRT 490
A +RTT+VR+LLPESWGFLCPVHTPDGEPCGL+NH+T+ C V + +
Sbjct: 423 AKMRTTTVRRLLPESWGFLCPVHTPDGEPCGLMNHLTAICEVVTQF----------AYTA 472
Query: 491 SILRVLIGVGMIPSLPKLVKSGPPAVLS----VLLDGRVVGVIPSSEIEKVVAHLRRLKV 546
S+ +L +G+ P V P S VLLDG +VG + + LR KV
Sbjct: 473 SVPALLCSLGVTP-----VDGAPHRPYSECYPVLLDGVMVGWVDKELAPSIADSLRHFKV 527
Query: 547 SAASVIPDDLEVGYVPLSLGGA-YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFE 605
IP +EV +P++ + YPGL+LFT+P + VRPV+N+ L EE LIG E
Sbjct: 528 LREKRIPPWMEVALIPMTGKPSLYPGLFLFTTPCRLVRPVQNLELGREE-----LIGTME 582
Query: 606 QVFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQ 665
Q+FM I + A TH+E+ P +LSV+AN P+SDHNQSPRNMYQCQM KQ
Sbjct: 583 QIFMNIAIFED----EVFAGVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQ 638
Query: 666 TMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDME 725
TMGF + + R+D KLY LQTPQ+P+VR Y Y +D YP GTNAIVAV++YTGYDME
Sbjct: 639 TMGFPLLTYRDRSDNKLYRLQTPQSPLVRPYMYDYYDMDNYPIGTNAIVAVISYTGYDME 698
Query: 726 DAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLP 785
DAMI+NK+S +RG HG +Y++E IDLS+ + D + D + + +D DGLP
Sbjct: 699 DAMIVNKASWERGFAHGSVYKSEFIDLSEKIKQGDDSLVFGVKPGDPRIVQK-LDDDGLP 757
Query: 786 YVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRH 844
++G + G+PY S + T K E+ VD + V ++ + K I R
Sbjct: 758 FIGAQLQYGDPYYSYLNLNTGESFVMYYKSKENCIVDNIKVCSNDTGSGKFKCICITMRV 817
Query: 845 TRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLES 904
RNP IGDKF+SRHGQKG+ S+LWP DMPF+ +GM PD++ NPH FPSRMTI ML+ES
Sbjct: 818 PRNPTIGDKFASRHGQKGILSRLWPAEDMPFTE-SGMVPDILFNPHGFPSRMTIGMLIES 876
Query: 905 VAAK 908
+A K
Sbjct: 877 MAGK 880
>gi|410337759|gb|JAA37826.1| polymerase (RNA) I polypeptide B, 128kDa [Pan troglodytes]
gi|410337761|gb|JAA37827.1| polymerase (RNA) I polypeptide B, 128kDa [Pan troglodytes]
Length = 1135
Score = 676 bits (1745), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/941 (40%), Positives = 533/941 (56%), Gaps = 83/941 (8%)
Query: 12 LRELVRHHIESFDYMLDEGLS--------------------EMFD--------------- 36
L+EL R H+ESF+Y + EGL + D
Sbjct: 35 LQELTRAHVESFNYAVHEGLGLAVQAIPPFEFAFKDERISFTILDAVISPPTVPKGTICK 94
Query: 37 -------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGAD 89
CR + +Y GKL AD+ + ++++ G P+M+K++ C+L+
Sbjct: 95 EANVYPAECRGRRSTYRGKLTADINWAVNGISKGIIKQFL--GYVPIMVKSKLCNLRNLP 152
Query: 90 SQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVI 149
Q L+ EEA EMGGYFI+NG+E+V R +I+P++N+P++M+R ++ R GYT V +
Sbjct: 153 PQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWKTRGPGYTQYGVSM 212
Query: 150 RCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY 209
CVR++ S+V + L+YL NG+V L F + + + LP+G LKALV +D +IF L
Sbjct: 213 HCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELI--- 269
Query: 210 DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYA 269
KE + VS+ ++I++ E T+ Q L ++GE F+ ++
Sbjct: 270 ---KGKEDDSFLRNSVSQMLRIVMEE----GCLTQKQVLNYLGECFRVKLNVPDWYPNEQ 322
Query: 270 VAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
AE + I +HL N +KF +L M +KLF+L + DNPDSL NQE+L PG L
Sbjct: 323 AAEFLFNQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMEDNPDSLVNQEVLTPGQLFL 382
Query: 330 IYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTG 389
++LKEKLE WL K + + + NL I + + E + TG
Sbjct: 383 MFLKEKLEGWLVSIKIAFDKKAQKTSVSMNTDNLMKIFTM-----GIDLTKPFEYLFATG 437
Query: 390 RLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFL 449
L ++TGL L Q +G V A++LNF+R++S FR VHRGA FA +RTT+VR+LLPESWGFL
Sbjct: 438 NLRSKTGLGLLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVRRLLPESWGFL 497
Query: 450 CPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLV 509
CPVHTPDGEPCGL+NH+T+ C V + + +I L +GV I P
Sbjct: 498 CPVHTPDGEPCGLMNHLTAVCEVVTQFVYTASI--------PALLCNLGVTPIDGAPHRS 549
Query: 510 KSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGA- 568
S VLLDG +VG + + LR KV IP EV +P++ +
Sbjct: 550 YS---ECYPVLLDGVMVGWVDKDLAPGIADSLRHFKVLREKRIPSREEVVLIPMTGKPSL 606
Query: 569 YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPAT 628
YPGL+LFT+P + VRPV+N+ L EE LIG EQ+FM + + A T
Sbjct: 607 YPGLFLFTTPCRLVRPVQNLELGKEE-----LIGTMEQIFMNVAIFED----EVFAGVTT 657
Query: 629 HEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTP 688
H+E+ P +LSV+AN P+SDHNQSPRNMYQCQM KQTMGF + + R+D KLY LQTP
Sbjct: 658 HQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPILTYQDRSDNKLYRLQTP 717
Query: 689 QTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTE 748
Q+P+VR + Y Y +D YP GTNAIVAV++YTGYDMEDAMI+NK+S +RG HG +Y++E
Sbjct: 718 QSPLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSE 777
Query: 749 TIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSW 808
IDLS+ + D + D + L +D DGLP++G + G+PY S + T
Sbjct: 778 FIDLSEKIKQGDSSLVFGIKPGDPRVLQK-LDDDGLPFIGAKLQYGDPYYSYLNLNTGES 836
Query: 809 RTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHTRNPIIGDKFSSRHGQKGVCSQL 867
K E+ VD + V ++ + K I R RNP IGDKF+SRHGQKG+ S+L
Sbjct: 837 FVMYYKSKENCVVDNIKVCSNDTGSGKFKCVCITMRVPRNPTIGDKFASRHGQKGILSRL 896
Query: 868 WPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
WP DMPF+ +GM PD++ NPH FPSRMTI ML+ES+A K
Sbjct: 897 WPAEDMPFTE-SGMVPDILFNPHGFPSRMTIGMLIESMAGK 936
>gi|397465556|ref|XP_003804557.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 1
[Pan paniscus]
Length = 1135
Score = 676 bits (1745), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/941 (40%), Positives = 534/941 (56%), Gaps = 83/941 (8%)
Query: 12 LRELVRHHIESFDYMLDEGLS--------------------EMFD--------------- 36
L+EL R H+ESF+Y + EGL + D
Sbjct: 35 LQELTRAHVESFNYAVHEGLGLAVQAIPPFEFAFKDERISFTILDAVISPPTVPKGTICK 94
Query: 37 -------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGAD 89
CR + +Y GKL AD+ + ++++ G P+M+K++ C+L+
Sbjct: 95 EANVYPAECRGRRSTYRGKLTADINWAVNGISKGIIKQFL--GYVPIMVKSKLCNLRNLP 152
Query: 90 SQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVI 149
Q L+ EEA EMGGYFI+NG+E+V R +I+P++N+P++M+R ++ R GYT V +
Sbjct: 153 PQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWKTRGPGYTQYGVSM 212
Query: 150 RCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY 209
CVR++ S+V + L+YL NG+V L F + + + LP+G LKALV +D +IF L
Sbjct: 213 HCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELI--- 269
Query: 210 DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYA 269
KE + VS+ ++I++ E T+ Q L ++GE F+ ++
Sbjct: 270 ---KGKEDDSFLRNSVSQMLRIVMEE----GCLTQKQVLNYLGECFRVKLNVPDWYPNEQ 322
Query: 270 VAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
AE + I +HL N +KF +L M +KLF+L + DNPDSL NQE+L PG L
Sbjct: 323 AAEFLFNQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMEDNPDSLVNQEVLTPGQLFL 382
Query: 330 IYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTG 389
++LKEKLE WL K + + + NL I + + E + TG
Sbjct: 383 MFLKEKLEGWLVSIKIAFDKKAQKTSVSMNTDNLMKIFTM-----GIDLTKPFEYLFATG 437
Query: 390 RLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFL 449
L ++TGL L Q +G V A++LNF+R++S FR VHRGA FA +RTT+VR+LLPESWGFL
Sbjct: 438 NLRSKTGLGLLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVRRLLPESWGFL 497
Query: 450 CPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLV 509
CPVHTPDGEPCGL+NH+T+ C V + + +I L +GV I P
Sbjct: 498 CPVHTPDGEPCGLMNHLTAVCEVVTQFVYTASI--------PALLCNLGVTPIDGAPHRS 549
Query: 510 KSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGA- 568
S VLLDG +VG + + LR KV IP +EV +P++ +
Sbjct: 550 YS---ECYPVLLDGVMVGWVDKDLAPGITDSLRHFKVLREKRIPPWMEVVLIPMTGKPSL 606
Query: 569 YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPAT 628
YPGL+LFT+P + VRPV+N+ L EE LIG EQ+FM + + A T
Sbjct: 607 YPGLFLFTTPCRLVRPVQNLELGKEE-----LIGTMEQIFMNVAIFED----EVFAGVTT 657
Query: 629 HEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTP 688
H+E+ P +LSV+AN P+SDHNQSPRNMYQCQM KQTMGF + + R+D KLY LQTP
Sbjct: 658 HQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTP 717
Query: 689 QTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTE 748
Q+P+VR + Y Y +D YP GTNAIVAV++YTGYDMEDAMI+NK+S +RG HG +Y++E
Sbjct: 718 QSPLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSE 777
Query: 749 TIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSW 808
IDLS+ + D + D + L +D DGLP++G + G+PY S + T
Sbjct: 778 FIDLSEKIKQGDSSLVFGIKPGDPRVLQK-LDDDGLPFIGAKLQYGDPYYSYLNLNTGES 836
Query: 809 RTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHTRNPIIGDKFSSRHGQKGVCSQL 867
K E+ VD + V ++ + K I R RNP IGDKF+SRHGQKG+ S+L
Sbjct: 837 FVMYYKSKENCVVDNIKVCSNDTGSGKFKCVCITMRVPRNPTIGDKFASRHGQKGILSRL 896
Query: 868 WPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
WP DMPF+ +GM PD++ NPH FPSRMTI ML+ES+A K
Sbjct: 897 WPAEDMPFTE-SGMVPDILFNPHGFPSRMTIGMLIESMAGK 936
>gi|332257260|ref|XP_003277727.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 3
[Nomascus leucogenys]
Length = 1070
Score = 676 bits (1744), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 370/877 (42%), Positives = 519/877 (59%), Gaps = 49/877 (5%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR + +Y GKL AD+ + ++++ G P+M+K++ C+L Q L+
Sbjct: 38 CRGRRSTYRGKLTADINWAVNGISKGIIKQFL--GYVPIMVKSKLCNLHNLPPQALIEHH 95
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
EEA EMGGYFI+NG+E+V R +I+P++N+P++M+R ++ R GYT V + CVR++ S
Sbjct: 96 EEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWKTRGPGYTQYGVSVHCVREEHS 155
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
+V + L+YL NG+V L F + + + LP+G LKALV +D +IF L KE
Sbjct: 156 AVNMNLHYLENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELI------KGKED 209
Query: 218 GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRD 277
+ VS+ ++I++ E +T+ Q L ++GE F+ ++ AE +
Sbjct: 210 DSFLRNSVSQMLRIVMEE----GCSTQKQVLNYLGECFRVKLNVPDWYPNEQAAEFLFNQ 265
Query: 278 YIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLE 337
I +HL N +KF +L M +KLF+L + DNPDSL NQE+L PG L ++LKEKLE
Sbjct: 266 CICIHLKSNTEKFYMLCLMTRKLFALAKGECMEDNPDSLVNQEVLTPGQLFLMFLKEKLE 325
Query: 338 DWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGL 397
WL K + + + NL I + + E + TG L ++TGL
Sbjct: 326 GWLVSIKIAFDKKAQKTNVSMNTDNLMRIFTM-----GIDLTKPFEYLFATGNLRSKTGL 380
Query: 398 DLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDG 457
L Q +G V A++LNF+R++S FR VHRGA FA +RTT+VR+LLPESWGFLCPVHTPDG
Sbjct: 381 GLLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVRRLLPESWGFLCPVHTPDG 440
Query: 458 EPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVL 517
EPCGL+NH+T+ C V + + SI +L +G+ P V P
Sbjct: 441 EPCGLMNHLTAVCEVVTQF----------VYTASIPALLCNLGVTP-----VDGAPHRPY 485
Query: 518 S----VLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGA-YPGL 572
S VLLDG +VG + + LRR KV IP +EV +P++ + YPGL
Sbjct: 486 SECYPVLLDGVMVGWVDKEIAPGIADSLRRFKVLREKRIPPWMEVVLIPMTGKPSLYPGL 545
Query: 573 YLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEI 632
+LFT+P + VRPV+N+ + EE LIG EQ+FM + + A TH+E+
Sbjct: 546 FLFTTPCRLVRPVQNLEMGKEE-----LIGTMEQIFMNVAIFED----EVFAGVTTHQEL 596
Query: 633 HPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPI 692
P +LSV+AN P+SDHNQSPRNMYQCQM KQTMGF + + R+D KLY LQTPQ+P+
Sbjct: 597 FPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTPQSPL 656
Query: 693 VRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDL 752
VR + Y Y +D YP GTNAIVAV++YTGYDMEDAMI+NK+S +RG HG +Y++E IDL
Sbjct: 657 VRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDL 716
Query: 753 SDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNS 812
S+ + D + D + L +D DGLP++G + G+PY S + T
Sbjct: 717 SEKIKQGDSSLVFGIKPGDPRVLQK-LDDDGLPFIGAKLQYGDPYYSYLNLNTGESFVMY 775
Query: 813 RKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDI 871
K E+ VD + V ++ + K I R RNP IGDKF+SRHGQKG+ S+LWP
Sbjct: 776 YKSKENCVVDNIKVCSNDTGSGKFKCVCITMRVPRNPTIGDKFASRHGQKGILSRLWPAE 835
Query: 872 DMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
DMPF+ +GM PD++ NPH FPSRMTI ML+ES+A K
Sbjct: 836 DMPFTE-SGMVPDILFNPHGFPSRMTIGMLIESMAGK 871
>gi|410955300|ref|XP_003984294.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 1
[Felis catus]
Length = 1135
Score = 676 bits (1744), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 383/946 (40%), Positives = 538/946 (56%), Gaps = 93/946 (9%)
Query: 12 LRELVRHHIESFDYMLDEGLSEMFD----------------------------------- 36
L+EL R H+ESF+Y + EGLS
Sbjct: 35 LQELTRAHVESFNYAVREGLSHAVQAIPPFEFAFKDERISLTIVDAVISPPMVPKGNICK 94
Query: 37 -------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGAD 89
CR + +Y GKL AD+ + V+++ G P+M+K++ C+L
Sbjct: 95 ELNIYPAECRGRRSTYRGKLTADISWAVNGISKGVIKQFL--GYVPIMVKSKLCNLYNLP 152
Query: 90 SQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVI 149
+ L+ EEA EMGGYFI+NG+E+V R +I+P++N+P++MVR ++ R GYT V +
Sbjct: 153 PKALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMVRPKWKTRGPGYTQYGVSM 212
Query: 150 RCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY 209
CVR++ S+V + L+YL NG+V L F + + + LP+G LKALV+ +D +IF L
Sbjct: 213 HCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALKALVNFSDYQIFQELI--- 269
Query: 210 DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYA 269
KE+ + +S+ ++I++ E +T+ Q L ++GE F+ +
Sbjct: 270 ---KGKEEDSFFRNSISQMLRIVMEE----GCSTQKQVLNYLGECFRVKLSLPDWYPNEQ 322
Query: 270 VAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
AE + I +HL + +KF +L M +KLF+L + +NPDSL NQE+L PG L
Sbjct: 323 AAEFLFNQCICIHLKSSTEKFYMLCLMTRKLFALAKGECMEENPDSLVNQEVLTPGQLFL 382
Query: 330 IYLKEKLEDWLRKGKKLIQDEIENNGKKFDF-FNLANIKKVMEKNPSKQIGTSIETMLKT 388
++LKEK+E WL I+ ++ +K + N N+ K+ + E +L T
Sbjct: 383 MFLKEKMEAWLVS----IKIALDKRAQKANVSINTENLMKIFSM--GTDLTKPFEYLLAT 436
Query: 389 GRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGF 448
G L ++TGL Q +G V A++LNF+R++S FR VHRGA FA +RTT+VR+LLPESWGF
Sbjct: 437 GNLRSKTGLGFLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVRRLLPESWGF 496
Query: 449 LCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKL 508
LCPVHTPDGEPCGL+NH+T+ C V + + SI +L +G+ P
Sbjct: 497 LCPVHTPDGEPCGLMNHLTAVCEVVTQF----------VYTASIPALLCSLGVTP----- 541
Query: 509 VKSGPPAVLS----VLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLS 564
V P S VLLDG +VG + V LR KV IP +EV +P++
Sbjct: 542 VDGAPHRPYSECYPVLLDGVMVGWVDKDLAPGVADSLRHFKVLREKRIPPWMEVALIPMT 601
Query: 565 LGGA-YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRN 623
+ YPGL+LFT+P + VRPV+N+ L EE LIG EQ+FM I +
Sbjct: 602 GKPSLYPGLFLFTTPCRLVRPVQNLELGKEE-----LIGTMEQIFMNIAIFED----EVL 652
Query: 624 AFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLY 683
A TH+E+ P +LSV+AN P+SDHNQSPRNMYQCQM KQTMGF + + R+D KLY
Sbjct: 653 AGVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQARSDNKLY 712
Query: 684 HLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQ 743
LQTPQ+P+VR Y Y +D YP GTNAIVAV++YTGYDMEDAMI+NK+S +RG HG
Sbjct: 713 RLQTPQSPLVRPYMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGS 772
Query: 744 IYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDK 803
+Y++E IDLS+ + D + D + L +D DGLP++G + G+PY +
Sbjct: 773 VYKSEFIDLSEKIKQGDDSLVFGVKPGDPRVLQK-LDDDGLPFIGAQLKYGDPYYGYLNL 831
Query: 804 TTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHTRNPIIGDKFSSRHGQKG 862
T K E+ VD + V ++ + K I R RNP IGDKF+SRHGQKG
Sbjct: 832 NTGENFVIYYKSKENCIVDNIKVCSNDTGSGKFKCICITMRVPRNPTIGDKFASRHGQKG 891
Query: 863 VCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
+ S+LWP DMPFS +GM PD++ NPH FPSRMTI ML+ES+A K
Sbjct: 892 ILSRLWPAEDMPFSE-SGMVPDILFNPHGFPSRMTIGMLIESMAGK 936
>gi|332814147|ref|XP_001144997.2| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 4
[Pan troglodytes]
Length = 1079
Score = 676 bits (1743), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/899 (42%), Positives = 528/899 (58%), Gaps = 55/899 (6%)
Query: 12 LRELVRHHIESFDYMLDEGLSEMFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNF 71
L+EL R H+ESF+Y + EGL QA I++ ++ S + ++F
Sbjct: 35 LQELTRAHVESFNYAVHEGLGLAV----QADINWA-----------VNGISKGIIKQF-L 78
Query: 72 GQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMV 131
G P+M+K++ C+L+ Q L+ EEA EMGGYFI+NG+E+V R +I+P++N+P++M+
Sbjct: 79 GYVPIMVKSKLCNLRNLPPQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMI 138
Query: 132 RSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLK 191
R ++ R GYT V + CVR++ S+V + L+YL NG+V L F + + + LP+G LK
Sbjct: 139 RPKWKTRGPGYTQYGVSMHCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALK 198
Query: 192 ALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHI 251
ALV +D +IF L KE + VS+ ++I++ E T+ Q L ++
Sbjct: 199 ALVSFSDYQIFQELI------KGKEDDSFLRNSVSQMLRIVMEE----GCLTQKQVLNYL 248
Query: 252 GEHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSD 311
GE F+ ++ AE + I +HL N +KF +L M +KLF+L + D
Sbjct: 249 GECFRVKLNVPDWYPNEQAAEFLFNQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMED 308
Query: 312 NPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVME 371
NPDSL NQE+L PG L ++LKEKLE WL K + + + NL I +
Sbjct: 309 NPDSLVNQEVLTPGQLFLMFLKEKLEGWLVSIKIAFDKKAQKTSVSMNTDNLMKIFTM-- 366
Query: 372 KNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFA 431
+ E + TG L ++TGL L Q +G V A++LNF+R++S FR VHRGA FA
Sbjct: 367 ---GIDLTKPFEYLFATGNLRSKTGLGLLQDSGLCVVADKLNFIRYLSHFRCVHRGADFA 423
Query: 432 GLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTS 491
+RTT+VR+LLPESWGFLCPVHTPDGEPCGL+NH+T+ C V + + +I
Sbjct: 424 KMRTTTVRRLLPESWGFLCPVHTPDGEPCGLMNHLTAVCEVVTQFVYTASI--------P 475
Query: 492 ILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASV 551
L +GV I P S VLLDG +VG + + LR KV
Sbjct: 476 ALLCNLGVTPIDGAPHRSYS---ECYPVLLDGVMVGWVDKDLAPGIADSLRHFKVLREKR 532
Query: 552 IPDDLEVGYVPLSLGGA-YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFME 610
IP +EV +P++ + YPGL+LFT+P + VRPV+N+ L EE LIG EQ+FM
Sbjct: 533 IPPWMEVVLIPMTGKPSLYPGLFLFTTPCRLVRPVQNLELGKEE-----LIGTMEQIFMN 587
Query: 611 IRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFS 670
+ + A TH+E+ P +LSV+AN P+SDHNQSPRNMYQCQM KQTMGF
Sbjct: 588 VAIFED----EVFAGVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFP 643
Query: 671 VQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMIL 730
+ + R+D KLY LQTPQ+P+VR + Y Y +D YP GTNAIVAV++YTGYDMEDAMI+
Sbjct: 644 ILTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIV 703
Query: 731 NKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQM 790
NK+S +RG HG +Y++E IDLS+ + D + D + L +D DGLP++G
Sbjct: 704 NKASWERGFAHGSVYKSEFIDLSEKIKQGDSSLVFGIKPGDPRVLQK-LDDDGLPFIGAK 762
Query: 791 IHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHTRNPI 849
+ G+PY S + T K E+ VD + V ++ + K I R RNP
Sbjct: 763 LQYGDPYYSYLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGKFKCVCITMRVPRNPT 822
Query: 850 IGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
IGDKF+SRHGQKG+ S+LWP DMPF+ +GM PD++ NPH FPSRMTI ML+ES+A K
Sbjct: 823 IGDKFASRHGQKGILSRLWPAEDMPFTE-SGMVPDILFNPHGFPSRMTIGMLIESMAGK 880
>gi|402891934|ref|XP_003909183.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 2
[Papio anubis]
Length = 1079
Score = 676 bits (1743), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 375/903 (41%), Positives = 527/903 (58%), Gaps = 63/903 (6%)
Query: 12 LRELVRHHIESFDYMLDEGLSEMFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNF 71
L+EL R H+ESF+Y + EGL + AD+ + ++++
Sbjct: 35 LQELTRAHVESFNYAVHEGLGL--------------AVQADINWAVNGISKGIIKQ--CL 78
Query: 72 GQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMV 131
G P+M+K++ C+L Q L+ EEA EMGGYFI+NG+E+V R +I+P++N+P++M+
Sbjct: 79 GYVPIMVKSKLCNLHSLPPQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMI 138
Query: 132 RSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLK 191
R ++ R GYT V + CVR++ S+V + L+YL NG+V L F + + + LP+G LK
Sbjct: 139 RPKWKTRGPGYTQYGVSMHCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALK 198
Query: 192 ALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHI 251
ALV +D +IF L KE + VS+ ++I++ E +T+ Q L ++
Sbjct: 199 ALVSFSDYQIFQELI------KGKEDDSFLRNSVSQMLRIVMEE----GCSTQKQVLNYL 248
Query: 252 GEHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSD 311
GE F+ ++ AE + I +HL + +KF +L M +KLF+L + D
Sbjct: 249 GECFRVKLNVPDWYPNEQAAEFLFNQCICIHLKSSTEKFYMLCLMTRKLFALAKGECMED 308
Query: 312 NPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVME 371
NPDSL NQE+L PG L ++LKEKLE WL K + + + NL I +
Sbjct: 309 NPDSLVNQEVLTPGQLFLMFLKEKLEGWLVSIKIAFDKKAQKTNVSMNTDNLMRIFTM-- 366
Query: 372 KNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFA 431
+ E + TG L ++TGL L Q +G V A++LNF+R++S FR VHRGA FA
Sbjct: 367 ---GIDLTKPFEYLFATGNLRSKTGLGLLQNSGLCVVADKLNFIRYLSHFRCVHRGADFA 423
Query: 432 GLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTS 491
+RTT+VR+LLPESWGFLCPVHTPDGEPCGL+NH+T+ C V + + S
Sbjct: 424 KMRTTTVRRLLPESWGFLCPVHTPDGEPCGLMNHLTAVCEVVTQF----------VYTAS 473
Query: 492 ILRVLIGVGMIPSLPKLVKSGPPAVLS----VLLDGRVVGVIPSSEIEKVVAHLRRLKVS 547
I +L +G+ P V P S VLLDG +VG + + LR KV
Sbjct: 474 IPALLCNLGVTP-----VDGAPHRPYSECYPVLLDGVMVGWVDKELAPGIADSLRHFKVL 528
Query: 548 AASVIPDDLEVGYVPLSLGGA-YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQ 606
IP +EV +P++ + YPGL+LFT+P + VRPV+N+ L EE LIG EQ
Sbjct: 529 REKRIPPWMEVVLIPMTGKPSLYPGLFLFTTPCRLVRPVQNLELGKEE-----LIGTMEQ 583
Query: 607 VFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQT 666
+FM + + A TH+E+ P +LSV+AN P+SDHNQSPRNMYQCQM KQT
Sbjct: 584 IFMNVAIFED----EVFAGVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQT 639
Query: 667 MGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMED 726
MGF + + R+D KLY LQTPQ+P+VR + Y Y +D YP GTNAIVAV++YTGYDMED
Sbjct: 640 MGFPLLTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMED 699
Query: 727 AMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPY 786
AMI+NK+S +RG HG +Y++E IDLS+ + D + D + L +D DGLP+
Sbjct: 700 AMIVNKASWERGFAHGSVYKSEFIDLSEKIKQGDSSLVFGIKPGDPRVLQK-LDDDGLPF 758
Query: 787 VGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHT 845
+G + G+PY S + T K E+ VD + V ++ + K I R
Sbjct: 759 IGAKLQYGDPYYSYLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGKFKCVCITMRVP 818
Query: 846 RNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESV 905
RNP IGDKF+SRHGQKG+ S+LWP DMPF+ +GM PD++ NPH FPSRMTI ML+ES+
Sbjct: 819 RNPTIGDKFASRHGQKGILSRLWPAEDMPFTE-SGMVPDILFNPHGFPSRMTIGMLIESM 877
Query: 906 AAK 908
A K
Sbjct: 878 AGK 880
>gi|426336845|ref|XP_004031665.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 2
[Gorilla gorilla gorilla]
Length = 1079
Score = 675 bits (1742), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/899 (42%), Positives = 529/899 (58%), Gaps = 55/899 (6%)
Query: 12 LRELVRHHIESFDYMLDEGLSEMFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNF 71
L+EL R H+ESF+Y + EGL QA I++ ++ S + ++F
Sbjct: 35 LQELTRAHVESFNYAVHEGLGLAV----QADINWA-----------VNGISKGIIKQF-L 78
Query: 72 GQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMV 131
G P+M+K++ C+L+ Q L+ EEA EMGGYFI+NG+E+V R +I+P++N+P++M+
Sbjct: 79 GYVPIMVKSKLCNLRNLPPQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMI 138
Query: 132 RSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLK 191
R ++ R GYT V + CVR++ S+V + L+YL NG+V L F + + + LP+G LK
Sbjct: 139 RPKWKTRGPGYTQYGVSMHCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALK 198
Query: 192 ALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHI 251
ALV +D +IF L KE + VS+ ++I++ E +T+ Q L ++
Sbjct: 199 ALVSFSDYQIFQELI------KGKEDDSFLRNSVSQMLRIVMEE----GCSTQKQVLNYL 248
Query: 252 GEHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSD 311
GE F+ ++ AE + I +HL N +KF +L M +KLF+L + D
Sbjct: 249 GECFRVKLNVPDWYPNEQAAEFLFNQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMED 308
Query: 312 NPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVME 371
NPDSL NQE+L PG L ++LKEKLE WL K + + + NL I +
Sbjct: 309 NPDSLVNQEVLTPGQLFLMFLKEKLEGWLVSIKIAFDKKAQKTNVSMNTDNLMRIFAM-- 366
Query: 372 KNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFA 431
+ E + TG L ++TGL L Q +G V A++LNF+R++S FR VHRGA FA
Sbjct: 367 ---GIDLTKPFEYLFATGNLRSKTGLGLLQDSGLCVVADKLNFIRYLSHFRCVHRGADFA 423
Query: 432 GLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTS 491
+RTT+VR+LLPESWGFLCPVHTPDGEPCGL+NH+T+ C V + + +I
Sbjct: 424 KMRTTTVRRLLPESWGFLCPVHTPDGEPCGLMNHLTAVCEVVTQFVYTASI--------P 475
Query: 492 ILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASV 551
L +GV I P S VLLDG +VG + + LR KV
Sbjct: 476 ALLCNLGVTPIDGAPHRSYS---ECYPVLLDGVMVGWVDKDLAPGIADSLRHFKVLREKR 532
Query: 552 IPDDLEVGYVPLSLGGA-YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFME 610
IP +EV +P++ + YPGL+LFT+P + VRPV+N+ L EE LIG EQ+FM
Sbjct: 533 IPPWMEVVLIPMTGKPSLYPGLFLFTTPCRLVRPVQNLELGKEE-----LIGTMEQIFMN 587
Query: 611 IRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFS 670
+ + A TH+E+ P +LSV+AN P+SDHNQSPRNMYQCQM KQTMGF
Sbjct: 588 VAIFED----EVFAGVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFP 643
Query: 671 VQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMIL 730
+ + R+D KLY LQTPQ+P+VR + Y Y +D YP GTNAIVAV++YTGYDMEDAMI+
Sbjct: 644 LLTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIV 703
Query: 731 NKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQM 790
NK+S +RG HG +Y++E IDLS+ + D + D + L +D DGLP++G
Sbjct: 704 NKASWERGFAHGSVYKSEFIDLSEKIKQGDTSLVFGIKPGDPRVLQK-LDDDGLPFIGAK 762
Query: 791 IHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHTRNPI 849
+ G+PY S + T K E+ VD + V ++ + K I R RNP
Sbjct: 763 LQYGDPYYSYLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGKFKCVCITMRVPRNPT 822
Query: 850 IGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
IGDKF+SRHGQKG+ S+LWP DMPF+ +GM PD++ NPH FPSRMTI ML+ES+A K
Sbjct: 823 IGDKFASRHGQKGILSRLWPAEDMPFTE-SGMVPDILFNPHGFPSRMTIGMLIESMAGK 880
>gi|397465558|ref|XP_003804558.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 2
[Pan paniscus]
Length = 1079
Score = 675 bits (1742), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/903 (41%), Positives = 530/903 (58%), Gaps = 63/903 (6%)
Query: 12 LRELVRHHIESFDYMLDEGLSEMFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNF 71
L+EL R H+ESF+Y + EGL QA I++ ++ S + ++F
Sbjct: 35 LQELTRAHVESFNYAVHEGLGLAV----QADINWA-----------VNGISKGIIKQF-L 78
Query: 72 GQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMV 131
G P+M+K++ C+L+ Q L+ EEA EMGGYFI+NG+E+V R +I+P++N+P++M+
Sbjct: 79 GYVPIMVKSKLCNLRNLPPQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMI 138
Query: 132 RSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLK 191
R ++ R GYT V + CVR++ S+V + L+YL NG+V L F + + + LP+G LK
Sbjct: 139 RPKWKTRGPGYTQYGVSMHCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALK 198
Query: 192 ALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHI 251
ALV +D +IF L KE + VS+ ++I++ E T+ Q L ++
Sbjct: 199 ALVSFSDYQIFQELI------KGKEDDSFLRNSVSQMLRIVMEE----GCLTQKQVLNYL 248
Query: 252 GEHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSD 311
GE F+ ++ AE + I +HL N +KF +L M +KLF+L + D
Sbjct: 249 GECFRVKLNVPDWYPNEQAAEFLFNQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMED 308
Query: 312 NPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVME 371
NPDSL NQE+L PG L ++LKEKLE WL K + + + NL I +
Sbjct: 309 NPDSLVNQEVLTPGQLFLMFLKEKLEGWLVSIKIAFDKKAQKTSVSMNTDNLMKIFTM-- 366
Query: 372 KNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFA 431
+ E + TG L ++TGL L Q +G V A++LNF+R++S FR VHRGA FA
Sbjct: 367 ---GIDLTKPFEYLFATGNLRSKTGLGLLQDSGLCVVADKLNFIRYLSHFRCVHRGADFA 423
Query: 432 GLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTS 491
+RTT+VR+LLPESWGFLCPVHTPDGEPCGL+NH+T+ C V + + S
Sbjct: 424 KMRTTTVRRLLPESWGFLCPVHTPDGEPCGLMNHLTAVCEVVTQF----------VYTAS 473
Query: 492 ILRVLIGVGMIPSLPKLVKSGPPAVLS----VLLDGRVVGVIPSSEIEKVVAHLRRLKVS 547
I +L +G+ P + P S VLLDG +VG + + LR KV
Sbjct: 474 IPALLCNLGVTP-----IDGAPHRSYSECYPVLLDGVMVGWVDKDLAPGITDSLRHFKVL 528
Query: 548 AASVIPDDLEVGYVPLSLGGA-YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQ 606
IP +EV +P++ + YPGL+LFT+P + VRPV+N+ L EE LIG EQ
Sbjct: 529 REKRIPPWMEVVLIPMTGKPSLYPGLFLFTTPCRLVRPVQNLELGKEE-----LIGTMEQ 583
Query: 607 VFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQT 666
+FM + + A TH+E+ P +LSV+AN P+SDHNQSPRNMYQCQM KQT
Sbjct: 584 IFMNVAIFED----EVFAGVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQT 639
Query: 667 MGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMED 726
MGF + + R+D KLY LQTPQ+P+VR + Y Y +D YP GTNAIVAV++YTGYDMED
Sbjct: 640 MGFPLLTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMED 699
Query: 727 AMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPY 786
AMI+NK+S +RG HG +Y++E IDLS+ + D + D + L +D DGLP+
Sbjct: 700 AMIVNKASWERGFAHGSVYKSEFIDLSEKIKQGDSSLVFGIKPGDPRVLQK-LDDDGLPF 758
Query: 787 VGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHT 845
+G + G+PY S + T K E+ VD + V ++ + K I R
Sbjct: 759 IGAKLQYGDPYYSYLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGKFKCVCITMRVP 818
Query: 846 RNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESV 905
RNP IGDKF+SRHGQKG+ S+LWP DMPF+ +GM PD++ NPH FPSRMTI ML+ES+
Sbjct: 819 RNPTIGDKFASRHGQKGILSRLWPAEDMPFTE-SGMVPDILFNPHGFPSRMTIGMLIESM 877
Query: 906 AAK 908
A K
Sbjct: 878 AGK 880
>gi|386780981|ref|NP_001247552.1| DNA-directed RNA polymerase I subunit RPA2 [Macaca mulatta]
gi|355751581|gb|EHH55836.1| hypothetical protein EGM_05119 [Macaca fascicularis]
gi|380817102|gb|AFE80425.1| DNA-directed RNA polymerase I subunit RPA2 isoform 1 [Macaca
mulatta]
gi|383422125|gb|AFH34276.1| DNA-directed RNA polymerase I subunit RPA2 isoform 1 [Macaca
mulatta]
gi|384949774|gb|AFI38492.1| DNA-directed RNA polymerase I subunit RPA2 isoform 1 [Macaca
mulatta]
Length = 1135
Score = 674 bits (1740), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/945 (40%), Positives = 535/945 (56%), Gaps = 91/945 (9%)
Query: 12 LRELVRHHIESFDYMLDEGLS--------------------EMFD--------------- 36
L+EL R H+ESF+Y + EGL + D
Sbjct: 35 LQELTRAHVESFNYAVHEGLGLAVQAIPPFEFAFKDERISFTILDAVISPPTVPKGTICK 94
Query: 37 -------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGAD 89
CR + +Y GKL AD+ + ++++ G P+M+K++ C+L
Sbjct: 95 EVSVYPAECRGRRSTYRGKLTADINWAVNGISKGIIKQFL--GYVPIMVKSKLCNLHSLP 152
Query: 90 SQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVI 149
Q L+ EEA EMGGYFI+NG+E+V R +I+P++N+P++M+R ++ R GYT + +
Sbjct: 153 PQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWKTRGPGYTQYGISM 212
Query: 150 RCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY 209
CVR++ S+V + L+YL NG+V L F + + + LP+G LKALV +D +IF L
Sbjct: 213 HCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELI--- 269
Query: 210 DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYA 269
KE + VS+ ++I++ E +T+ Q L ++G F+ ++
Sbjct: 270 ---KGKEDDSFLRNSVSQMLRIVMEE----GCSTQKQVLNYLGGCFRVKLNVPDWYPNEQ 322
Query: 270 VAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
AE + I +HL N +KF +L M +KLF+L + DNPDSL NQE+L PG L
Sbjct: 323 AAEFLFNQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMEDNPDSLVNQEVLTPGQLFL 382
Query: 330 IYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTG 389
++LKEKLE WL K + + + NL I + + E + TG
Sbjct: 383 MFLKEKLEGWLVSIKIAFDKKAQKTNVSMNTDNLMRIFTM-----GIDLTKPFEYLFATG 437
Query: 390 RLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFL 449
L ++TGL L Q +G V A++LNF+R++S FR VHRGA FA +RTT+VR+LLPESWGFL
Sbjct: 438 NLRSKTGLGLLQNSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVRRLLPESWGFL 497
Query: 450 CPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLV 509
CPVHTPDGEPCGL+NH+T+ C V + + SI +L +G+ P V
Sbjct: 498 CPVHTPDGEPCGLMNHLTAVCEVVTQF----------VYTASIPALLCNLGVTP-----V 542
Query: 510 KSGPPAVLS----VLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSL 565
P S VLLDG +VG + + LR KV IP +EV +P++
Sbjct: 543 DGAPHRPYSECYPVLLDGVMVGWVDKELAPGIADSLRHFKVLREKRIPPWMEVVLIPMTG 602
Query: 566 GGA-YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNA 624
+ YPGL+LFT+P + VRPV+N+ L EE LIG EQ+FM + + A
Sbjct: 603 KPSLYPGLFLFTTPCRLVRPVQNLELGKEE-----LIGTMEQIFMNVAIFED----EVFA 653
Query: 625 FPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYH 684
TH+E+ P +LSV+AN P+SDHNQSPRNMYQCQM KQTMGF + + R+D KLY
Sbjct: 654 GVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYR 713
Query: 685 LQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQI 744
LQTPQ+P+VR + Y Y +D YP GTNAIVAV++YTGYDMEDAMI+NK+S +RG HG +
Sbjct: 714 LQTPQSPLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSV 773
Query: 745 YQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKT 804
Y++E IDLS+ + D + D + L +D DGLP++G + G+PY S +
Sbjct: 774 YKSEFIDLSEKIKQGDSSLVFGIKPGDPRILQK-LDDDGLPFIGAKLQYGDPYYSYLNLN 832
Query: 805 TNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHTRNPIIGDKFSSRHGQKGV 863
T K E+ VD + V ++ + K I R RNP IGDKF+SRHGQKG+
Sbjct: 833 TGESFVMYYKSKENCVVDNIKVCSNDTGSGKFKCVCITMRVPRNPTIGDKFASRHGQKGI 892
Query: 864 CSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
S+LWP DMPF+ +GM PD++ NPH FPSRMTI ML+ES+A K
Sbjct: 893 LSRLWPAEDMPFTE-SGMVPDILFNPHGFPSRMTIGMLIESMAGK 936
>gi|149727186|ref|XP_001495511.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 1
[Equus caballus]
Length = 1135
Score = 674 bits (1740), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/946 (40%), Positives = 537/946 (56%), Gaps = 93/946 (9%)
Query: 12 LRELVRHHIESFDYMLDEGLSEMFD----------------------------------- 36
L+EL R H+ESF+Y + EGLS
Sbjct: 35 LQELTRAHVESFNYAVREGLSHAVQAIPPFEFAFKDERISLTIVDAVISPPTVPKGSICK 94
Query: 37 -------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGAD 89
CR + +Y GKL AD+ + ++++ G P+M+K++ C+L
Sbjct: 95 DLSIYPAECRGRRSTYRGKLTADISWSVNGIPKGIIKQFL--GYVPIMVKSKLCNLYNLP 152
Query: 90 SQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVI 149
+ L+ EEA EMGGYFI+NG+E+V R +I+P++N+P+++ R ++ R GYT V +
Sbjct: 153 PRALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIALTRPKWKTRGPGYTQYGVSM 212
Query: 150 RCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY 209
CVR++ S+V + L+YL NG+V L F + + + LP+G LKALV +D +IF L
Sbjct: 213 HCVREEHSAVNMNLHYLENGTVMLNFVYRKELFFLPLGFALKALVSFSDYQIFQELI--- 269
Query: 210 DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYA 269
KE + VS+ ++I+ E +T+ Q L ++GE F+ ++
Sbjct: 270 ---KGKEDDSFFRNSVSQMLRIVTEE----GCSTQKQVLNYLGERFRVKLNLPDWYPDAQ 322
Query: 270 VAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
AE + I +HL N +KF +L M +KLF+L + +NPDSL NQE+L PG L
Sbjct: 323 AAEFLFNQCICIHLKSNTEKFYVLCLMTRKLFALAKGECMEENPDSLVNQEVLTPGQLFL 382
Query: 330 IYLKEKLEDWLRKGKKLIQDEIENNGKKFDF-FNLANIKKVMEKNPSKQIGTSIETMLKT 388
++LKEK+E WL I+ ++ +K D N N+ K+ N + E +L T
Sbjct: 383 MFLKEKMEAWLVS----IKIALDKKAQKTDVSINTDNLMKIF--NLGTDLTKPFEYLLAT 436
Query: 389 GRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGF 448
G L ++TGL Q +G V A++LNF+R++S FR VHRGA FA +RTT+VR+LLPESWGF
Sbjct: 437 GNLRSKTGLGFLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVRRLLPESWGF 496
Query: 449 LCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKL 508
LCPVHTPDGEPCGL+NH+T+ C V + + S+ +L +G+ P
Sbjct: 497 LCPVHTPDGEPCGLMNHLTAICEVVTQF----------AYTASVPALLCSLGVTP----- 541
Query: 509 VKSGPPAVLS----VLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLS 564
V P S VLLDG +VG + + LR KV IP +EV +P++
Sbjct: 542 VDGAPHRPYSECYPVLLDGVMVGWVDKELAPSIADSLRHFKVLREKRIPPWMEVALIPMT 601
Query: 565 LGGA-YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRN 623
+ YPGL+LFT+P + VRPV+N+ L EE LIG EQ+FM I +
Sbjct: 602 GKPSLYPGLFLFTTPCRLVRPVQNLELGREE-----LIGTMEQIFMNIAIFED----EVF 652
Query: 624 AFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLY 683
A TH+E+ P +LSV+AN P+SDHNQSPRNMYQCQM KQTMGF + + R+D KLY
Sbjct: 653 AGVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYRDRSDNKLY 712
Query: 684 HLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQ 743
LQTPQ+P+VR Y Y +D YP GTNAIVAV++YTGYDMEDAMI+NK+S +RG HG
Sbjct: 713 RLQTPQSPLVRPYMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGS 772
Query: 744 IYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDK 803
+Y++E IDLS+ + D + D + + +D DGLP++G + G+PY S +
Sbjct: 773 VYKSEFIDLSEKIKQGDDSLVFGVKPGDPRIVQK-LDDDGLPFIGAQLQYGDPYYSYLNL 831
Query: 804 TTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHTRNPIIGDKFSSRHGQKG 862
T K E+ VD + V ++ + K I R RNP IGDKF+SRHGQKG
Sbjct: 832 NTGESFVMYYKSKENCIVDNIKVCSNDTGSGKFKCICITMRVPRNPTIGDKFASRHGQKG 891
Query: 863 VCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
+ S+LWP DMPF+ +GM PD++ NPH FPSRMTI ML+ES+A K
Sbjct: 892 ILSRLWPAEDMPFTE-SGMVPDILFNPHGFPSRMTIGMLIESMAGK 936
>gi|452981615|gb|EME81375.1| hypothetical protein MYCFIDRAFT_58897 [Pseudocercospora fijiensis
CIRAD86]
Length = 1209
Score = 674 bits (1739), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/904 (41%), Positives = 544/904 (60%), Gaps = 70/904 (7%)
Query: 39 RQAKISYTGKLMADVEFQYLD-AGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
R++ SY G+ +E++ D A VR+ FG+ P+ML++ RCHL+ ++LV+ +
Sbjct: 119 RESHKSYRGRFRGRLEYRVNDGAWKQTVRD---FGELPIMLRSNRCHLEALSPKELVNRR 175
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
EE+ E+GGYFI+NG+E++ R +I+ ++N+PM++ R SF +R YT V IR VR DQ+
Sbjct: 176 EESDELGGYFIINGVEKLIRMLIVNRRNFPMAIERPSFVNRGAAYTKYGVQIRSVRPDQT 235
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
S T L+YL +G+V F + EYL+PV ++LKAL +TND +IF L K + K
Sbjct: 236 SQTNVLHYLSDGNVTFRFSWRKNEYLVPVLMILKALTETNDRQIFEGLVGPAGGKDLESK 295
Query: 218 GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRD 277
VS+RV+++L + ++ ++ + ++G F+ V+ + A ++R
Sbjct: 296 -----QFVSDRVELLLRTYKAYNIHSKAKTRAYLGSKFRVVLGMPDDATDEACGTELLRK 350
Query: 278 YIFVHLN-------DNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITI 330
+ HL ++ DK +L+FM++KL++LV+ DNPD++QNQEILLPG L +
Sbjct: 351 IVLPHLGCYDVTEANDADKARMLLFMIRKLYALVEGECAVDNPDAVQNQEILLPGALYGM 410
Query: 331 YLKEKLEDWLRK-GKKLIQDEIENNGKKFDF--FNLANIKKVMEKNPSKQIGTSIETMLK 387
+KE++E+WL G + + NN F F+ KV+ K ++ IG ++ +
Sbjct: 411 IVKERIEEWLNSIGAQSREYGRTNNWPSFTSAEFDRDFAPKVIRKT-NENIGQGLDYFMA 469
Query: 388 TGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWG 447
TG L + +GLDLQQ +G+TV AE++NF RFIS FR VHRG+ FA L+TT+VRKLLPESWG
Sbjct: 470 TGNLVSPSGLDLQQVSGFTVVAEKINFYRFISHFRMVHRGSFFAQLKTTTVRKLLPESWG 529
Query: 448 FLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPK 507
FLCPVHTPDG PCGLLNH+ C+V + + D S + + ++ + P+L
Sbjct: 530 FLCPVHTPDGSPCGLLNHLAHKCKVET------SSTDVSHVPALVAQIGVSSTSEPTLHD 583
Query: 508 LVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGG 567
V V LDGRV+G + + + LR KV +P +LEVGYVPLS GG
Sbjct: 584 SV--------VVQLDGRVLGYCSPKQAKTIADTLRYWKVEGTHNVPKELEVGYVPLSNGG 635
Query: 568 AYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC--PDGGDGGRRNAF 625
YPG+Y+F+ + +RPV+ + L E+ +GPFEQ +M I C P+ G
Sbjct: 636 QYPGVYMFSQAARMLRPVKYLPLDKED-----FVGPFEQPYMSIACTEPEISSGD----- 685
Query: 626 PATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHL 685
TH E T +LS+VAN TP+S+ NQSPRNMYQCQM KQTMG ALK+R D K Y L
Sbjct: 686 -TTHVEYDVTNILSIVANQTPFSNFNQSPRNMYQCQMGKQTMGTPGTALKYRTDNKSYRL 744
Query: 686 QTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIY 745
QT QTP+VRT + +YG+D +P GTNA+VAV++YTGYDM+DAMILNKS+ +RG +G IY
Sbjct: 745 QTGQTPVVRTPKHNEYGLDNFPNGTNAVVAVISYTGYDMDDAMILNKSAHERGFGYGTIY 804
Query: 746 QTETIDLSDDGNKVDRGQKL-------FRRNKDAKS-LHSVIDSDGLPYVGQMIHPGEPY 797
+ + IDL+++ NK RG+ F K+ + +D DG VG + G+
Sbjct: 805 KAKKIDLAEE-NKAARGRSTVVTHMFGFAPTGIIKAQWRNTLDDDGFAQVGVKVKEGDAI 863
Query: 798 CSIYDKTTNSW-----------RTNSRKGSESVFVDYVA-VDMKNSKNLP-QKANIRFRH 844
+ Y N K +E +V+ + + + N P Q ++RFR
Sbjct: 864 AAFYTVVKNPLTGEYENKDGVTHIQKYKEAEEGYVEEIKLIGNETGSNEPCQAISMRFRI 923
Query: 845 TRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLES 904
R P+IGDKFSSRHGQKGV SQ WP +DMPF+ +GM+PD+IINPHAFPSRMTI M +ES
Sbjct: 924 PRPPVIGDKFSSRHGQKGVMSQKWPTVDMPFT-ESGMQPDVIINPHAFPSRMTIGMFVES 982
Query: 905 VAAK 908
+A K
Sbjct: 983 LAGK 986
>gi|426336847|ref|XP_004031666.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 3
[Gorilla gorilla gorilla]
Length = 1070
Score = 674 bits (1739), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/873 (42%), Positives = 517/873 (59%), Gaps = 41/873 (4%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR + +Y GKL AD+ + ++++ G P+M+K++ C+L+ Q L+
Sbjct: 38 CRGRRSTYRGKLTADINWAVNGISKGIIKQFL--GYVPIMVKSKLCNLRNLPPQALIEHH 95
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
EEA EMGGYFI+NG+E+V R +I+P++N+P++M+R ++ R GYT V + CVR++ S
Sbjct: 96 EEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWKTRGPGYTQYGVSMHCVREEHS 155
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
+V + L+YL NG+V L F + + + LP+G LKALV +D +IF L KE
Sbjct: 156 AVNMNLHYLENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELI------KGKED 209
Query: 218 GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRD 277
+ VS+ ++I++ E +T+ Q L ++GE F+ ++ AE +
Sbjct: 210 DSFLRNSVSQMLRIVMEE----GCSTQKQVLNYLGECFRVKLNVPDWYPNEQAAEFLFNQ 265
Query: 278 YIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLE 337
I +HL N +KF +L M +KLF+L + DNPDSL NQE+L PG L ++LKEKLE
Sbjct: 266 CICIHLKSNTEKFYMLCLMTRKLFALAKGECMEDNPDSLVNQEVLTPGQLFLMFLKEKLE 325
Query: 338 DWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGL 397
WL K + + + NL I + + E + TG L ++TGL
Sbjct: 326 GWLVSIKIAFDKKAQKTNVSMNTDNLMRIFAM-----GIDLTKPFEYLFATGNLRSKTGL 380
Query: 398 DLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDG 457
L Q +G V A++LNF+R++S FR VHRGA FA +RTT+VR+LLPESWGFLCPVHTPDG
Sbjct: 381 GLLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVRRLLPESWGFLCPVHTPDG 440
Query: 458 EPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVL 517
EPCGL+NH+T+ C V + + +I L +GV I P S
Sbjct: 441 EPCGLMNHLTAVCEVVTQFVYTASI--------PALLCNLGVTPIDGAPHRSYS---ECY 489
Query: 518 SVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGA-YPGLYLFT 576
VLLDG +VG + + LR KV IP +EV +P++ + YPGL+LFT
Sbjct: 490 PVLLDGVMVGWVDKDLAPGIADSLRHFKVLREKRIPPWMEVVLIPMTGKPSLYPGLFLFT 549
Query: 577 SPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIHPTG 636
+P + VRPV+N+ L EE LIG EQ+FM + + A TH+E+ P
Sbjct: 550 TPCRLVRPVQNLELGKEE-----LIGTMEQIFMNVAIFED----EVFAGVTTHQELFPHS 600
Query: 637 MLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTN 696
+LSV+AN P+SDHNQSPRNMYQCQM KQTMGF + + R+D KLY LQTPQ+P+VR +
Sbjct: 601 LLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPS 660
Query: 697 TYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDG 756
Y Y +D YP GTNAIVAV++YTGYDMEDAMI+NK+S +RG HG +Y++E IDLS+
Sbjct: 661 MYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKI 720
Query: 757 NKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGS 816
+ D + D + L +D DGLP++G + G+PY S + T K
Sbjct: 721 KQGDTSLVFGIKPGDPRVLQK-LDDDGLPFIGAKLQYGDPYYSYLNLNTGESFVMYYKSK 779
Query: 817 ESVFVDYVAVDMKNSKNLPQKA-NIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPF 875
E+ VD + V ++ + K I R RNP IGDKF+SRHGQKG+ S+LWP DMPF
Sbjct: 780 ENCVVDNIKVCSNDTGSGKFKCVCITMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPF 839
Query: 876 SGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
+ +GM PD++ NPH FPSRMTI ML+ES+A K
Sbjct: 840 TE-SGMVPDILFNPHGFPSRMTIGMLIESMAGK 871
>gi|354471216|ref|XP_003497839.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 1
[Cricetulus griseus]
Length = 1135
Score = 674 bits (1739), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/947 (40%), Positives = 536/947 (56%), Gaps = 95/947 (10%)
Query: 12 LRELVRHHIESFDYMLDEGLSEMFD----------------------------------- 36
L++L R H++SF+Y + EGLS
Sbjct: 35 LQDLTRAHVDSFNYAVLEGLSHAVQAIPPFEFAFKDERISLTIVDAVISPPSVPKGTICK 94
Query: 37 -------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGAD 89
CR + +Y G+L AD+ + V+++ G P+M+K++ C+L
Sbjct: 95 ELNVYPAECRGRRSTYRGRLTADISWAVNGVPKGVIKQFL--GYVPIMVKSKLCNLYNLP 152
Query: 90 SQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVI 149
Q L+ EEA EMGGYFI+NG+E+V R +I+P++N+P++M+R ++ R GYT V +
Sbjct: 153 PQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWKSRGLGYTHFGVSM 212
Query: 150 RCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY 209
CVR++ S+V + L+Y+ NG+V L F + + + LP+G VLKALV +D +IF L
Sbjct: 213 HCVREEHSAVNMNLHYVENGTVMLNFIYRKELFFLPLGFVLKALVSFSDYQIFQELI--- 269
Query: 210 DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYA 269
KG V +L V + +T+ Q L ++GE F+ + +
Sbjct: 270 -------KGKEEDSFFKNSVSQMLRTVMEEGCSTQKQVLNYLGERFRVKLSLPEWYPNEE 322
Query: 270 VAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
A+ + + I +HL + +KF LL M +KLF+L + DNPDSL NQE+L PG L
Sbjct: 323 AAKFLFNECICIHLKSDTEKFYLLCLMTRKLFALARGECMEDNPDSLVNQEVLTPGQLFL 382
Query: 330 IYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTG 389
++LKEK+E+WL K + + + NL I + ++ E +L TG
Sbjct: 383 MFLKEKMENWLASIKIALDKRAQKTNVSINNENLLKIFSM-----GTELTRPFEYLLATG 437
Query: 390 RLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFL 449
L ++TGL Q +G V A++LNF+R++S FR VHRGA FA +RTT+VR+LLPESWGFL
Sbjct: 438 NLRSKTGLGFLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVRRLLPESWGFL 497
Query: 450 CPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLV 509
CPVHTPDG PCGLLNH+T+ C V + + S+ +L G+G+ P V
Sbjct: 498 CPVHTPDGAPCGLLNHLTAICEVVTKF----------VYTASVPALLCGLGVTP-----V 542
Query: 510 KSGPPAVLS----VLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSL 565
+ P S VLLDG +VG + V LRR KV IP +EV VP++
Sbjct: 543 DATPCRPYSDCYPVLLDGVMVGWVDKELAPDVADTLRRFKVLREKRIPPWMEVALVPMTG 602
Query: 566 GGA-YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNA 624
+ YPGL+LFT+P + VRPV+N+ L EE LIG EQ+FM + +
Sbjct: 603 KPSLYPGLFLFTTPCRLVRPVQNLELGKEE-----LIGTMEQLFMNVAIFED------EV 651
Query: 625 FP--ATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKL 682
F +TH+E+ P +LSV+AN P+SDHNQSPRNMYQCQM KQTMGF + + R+D KL
Sbjct: 652 FSGISTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTFQDRSDNKL 711
Query: 683 YHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHG 742
Y LQTPQ+P+VR Y Y +D YP GTNAIVAV++YTGYDMEDAMI+NK+S +RG HG
Sbjct: 712 YRLQTPQSPLVRPCMYDYYSMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHG 771
Query: 743 QIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYD 802
+Y++E IDLS+ + + + D + + +D DGLP++G + G+PY S +
Sbjct: 772 SVYKSEFIDLSEKFKQGNDNLVFGIKPGDPRVMQK-LDDDGLPFIGAKLQFGDPYYSYLN 830
Query: 803 KTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHTRNPIIGDKFSSRHGQK 861
T K E+ VD + V ++ + K I R RNP IGDKF+SRHGQK
Sbjct: 831 LNTGEGFVVYYKSKENCIVDNIKVCSNDTGSGKFKCICITIRVPRNPTIGDKFASRHGQK 890
Query: 862 GVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
G+ S+LWP DMPF+ +GM PD++ NPH FPSRMTI ML+ES+A K
Sbjct: 891 GILSRLWPAEDMPFTE-SGMVPDILFNPHGFPSRMTIGMLIESMAGK 936
>gi|114579608|ref|XP_001145162.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 6
[Pan troglodytes]
Length = 1070
Score = 674 bits (1739), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/873 (42%), Positives = 516/873 (59%), Gaps = 41/873 (4%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR + +Y GKL AD+ + ++++ G P+M+K++ C+L+ Q L+
Sbjct: 38 CRGRRSTYRGKLTADINWAVNGISKGIIKQFL--GYVPIMVKSKLCNLRNLPPQALIEHH 95
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
EEA EMGGYFI+NG+E+V R +I+P++N+P++M+R ++ R GYT V + CVR++ S
Sbjct: 96 EEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWKTRGPGYTQYGVSMHCVREEHS 155
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
+V + L+YL NG+V L F + + + LP+G LKALV +D +IF L KE
Sbjct: 156 AVNMNLHYLENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELI------KGKED 209
Query: 218 GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRD 277
+ VS+ ++I++ E T+ Q L ++GE F+ ++ AE +
Sbjct: 210 DSFLRNSVSQMLRIVMEE----GCLTQKQVLNYLGECFRVKLNVPDWYPNEQAAEFLFNQ 265
Query: 278 YIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLE 337
I +HL N +KF +L M +KLF+L + DNPDSL NQE+L PG L ++LKEKLE
Sbjct: 266 CICIHLKSNTEKFYMLCLMTRKLFALAKGECMEDNPDSLVNQEVLTPGQLFLMFLKEKLE 325
Query: 338 DWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGL 397
WL K + + + NL I + + E + TG L ++TGL
Sbjct: 326 GWLVSIKIAFDKKAQKTSVSMNTDNLMKIFTM-----GIDLTKPFEYLFATGNLRSKTGL 380
Query: 398 DLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDG 457
L Q +G V A++LNF+R++S FR VHRGA FA +RTT+VR+LLPESWGFLCPVHTPDG
Sbjct: 381 GLLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVRRLLPESWGFLCPVHTPDG 440
Query: 458 EPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVL 517
EPCGL+NH+T+ C V + + +I L +GV I P S
Sbjct: 441 EPCGLMNHLTAVCEVVTQFVYTASI--------PALLCNLGVTPIDGAPHRSYS---ECY 489
Query: 518 SVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGA-YPGLYLFT 576
VLLDG +VG + + LR KV IP +EV +P++ + YPGL+LFT
Sbjct: 490 PVLLDGVMVGWVDKDLAPGIADSLRHFKVLREKRIPPWMEVVLIPMTGKPSLYPGLFLFT 549
Query: 577 SPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIHPTG 636
+P + VRPV+N+ L EE LIG EQ+FM + + A TH+E+ P
Sbjct: 550 TPCRLVRPVQNLELGKEE-----LIGTMEQIFMNVAIFED----EVFAGVTTHQELFPHS 600
Query: 637 MLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTN 696
+LSV+AN P+SDHNQSPRNMYQCQM KQTMGF + + R+D KLY LQTPQ+P+VR +
Sbjct: 601 LLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPILTYQDRSDNKLYRLQTPQSPLVRPS 660
Query: 697 TYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDG 756
Y Y +D YP GTNAIVAV++YTGYDMEDAMI+NK+S +RG HG +Y++E IDLS+
Sbjct: 661 MYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKI 720
Query: 757 NKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGS 816
+ D + D + L +D DGLP++G + G+PY S + T K
Sbjct: 721 KQGDSSLVFGIKPGDPRVLQK-LDDDGLPFIGAKLQYGDPYYSYLNLNTGESFVMYYKSK 779
Query: 817 ESVFVDYVAVDMKNSKNLPQKA-NIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPF 875
E+ VD + V ++ + K I R RNP IGDKF+SRHGQKG+ S+LWP DMPF
Sbjct: 780 ENCVVDNIKVCSNDTGSGKFKCVCITMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPF 839
Query: 876 SGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
+ +GM PD++ NPH FPSRMTI ML+ES+A K
Sbjct: 840 TE-SGMVPDILFNPHGFPSRMTIGMLIESMAGK 871
>gi|405121128|gb|AFR95897.1| DNA-directed RNA polymerase I polypeptide 2 [Cryptococcus
neoformans var. grubii H99]
Length = 1176
Score = 674 bits (1739), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/928 (40%), Positives = 551/928 (59%), Gaps = 61/928 (6%)
Query: 6 SADFEPLRELVRHHIESFDYMLDE-------GLSEMFDHCRQAKISYTGK-----LMADV 53
++D L ELV HI+SF+ ++++ GL +M K+ + GK L +
Sbjct: 66 ASDVPALDELVAPHIKSFNALIEDEGNPGAKGLLQMGVEDIGEKVVFDGKGSEGGLGTKL 125
Query: 54 EFQY--LDAGSPVVRERFNFGQ----FPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYF 107
++ + P+V E+ FP + R L+ EE+ GGYF
Sbjct: 126 SYRIDRVALSKPLVPEKDKLAVERRVFPTEAE-RSLRKSRNVVCCLLWFDEESTSFGGYF 184
Query: 108 ILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLL 167
I+NG E++ R +++P+++ P+++ R SF R YT IRCVR D+++ T ++YL
Sbjct: 185 IVNGNEKIIRYLVVPRRHNPINLYRPSFAKRGASYTPYGCQIRCVRPDETACTNTIHYLS 244
Query: 168 NGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSE 227
NG L F + EY++P+ ++LKALVD +D EIF L +G + +++
Sbjct: 245 NGGATLRFAWRKVEYMIPLMLILKALVDASDKEIFEGLI----------QGEYDNTFLTD 294
Query: 228 RVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDNN 287
RV+++L + L T QCL ++GE F+ V++ S V ++R + VHL
Sbjct: 295 RVELLLRGQKSWGLHTGAQCLDYLGEKFRVVLNVPDDWSNVQVGGHLLRKVVLVHLPAPR 354
Query: 288 DKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLI 347
DKF +L+FML+KL+S V + DNPDS Q+ E+LLPG L + +KE+ +D L K I
Sbjct: 355 DKFRMLLFMLRKLYSQVSGATCPDNPDSPQHHEVLLPGFLYGMIIKERFDDCLNAVKSQI 414
Query: 348 QDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTV 407
Q ++ + GK F + V+ K + IG+ + L TG L + TGLDLQQ +G+T+
Sbjct: 415 QLDLRD-GKARSFMDPKYFTSVLSKT-NWDIGSKLSYFLATGNLVSPTGLDLQQTSGFTI 472
Query: 408 QAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMT 467
AE+LNF R++S FR +HRGA FA L+TT+VRKL+PESWGFLCPVHTPDG PCGLLNH++
Sbjct: 473 VAEKLNFYRYLSHFRCIHRGAFFAELKTTTVRKLMPESWGFLCPVHTPDGSPCGLLNHLS 532
Query: 468 STCRVASYYDSRGNIRDFSKMRTSILRVLIGV-GMIPSLPKLVKSGPPAVLSVLLDGRVV 526
TC++ + S + S + L+ GM + ++ + LDG+V+
Sbjct: 533 HTCQIVT-----------SSLDVSHIPALLSAQGMTQVFASSIDG--RRMVCIQLDGKVI 579
Query: 527 GVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVR 586
G + +++ LR+LK S +P DLE+GYVP++ GG YPGLYLF+S + +RPV
Sbjct: 580 GYASPMKAKQLANRLRKLKTEVDSKVPLDLEIGYVPVTKGGQYPGLYLFSSRSRMMRPVT 639
Query: 587 NISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTP 646
+ E+ ++ +G FEQV+M++ ++H E+ PT MLSV+ANLTP
Sbjct: 640 YL-----ENGKLDHLGSFEQVYMDVAITKE----EIEKGVSSHVELDPTSMLSVIANLTP 690
Query: 647 YSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEY 706
+SD NQSPRNMYQCQM KQ+MG A+ R D K+Y LQ+ QTP+VR + + YG D +
Sbjct: 691 FSDFNQSPRNMYQCQMGKQSMGTPSTAISKRTDNKMYRLQSGQTPVVRPDLHNHYGFDNF 750
Query: 707 PTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSD--DGNKVDRGQK 764
P GTNAIVAV++YTGYDMEDAMILNKS+ +RG +G +Y+ + DL ++ +
Sbjct: 751 PNGTNAIVAVISYTGYDMEDAMILNKSAHERGFGYGTVYKADIFDLKGVPGASRSAKPTL 810
Query: 765 LFRRNKDAKSLH---SVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFV 821
F +D K H ++I DGLP +G + G+P C+ D TT + + KG E+ F+
Sbjct: 811 HFGLGRDVKEDHDARNIISQDGLPIIGTKVKTGDPLCAYIDDTTGRTKFHKYKGDETAFI 870
Query: 822 DYVAVDMKNSKNLP-QKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTG 880
D V V ++ + QK +I+ R R+P+IGDKFSSRHGQKGVCSQ +P IDMPFS +G
Sbjct: 871 DEVRVLGSDAGDAELQKIHIKLRIPRSPVIGDKFSSRHGQKGVCSQKFPAIDMPFS-ESG 929
Query: 881 MRPDLIINPHAFPSRMTIAMLLESVAAK 908
M+PD+IINPHAFPSRMTI M +ES+A K
Sbjct: 930 MQPDVIINPHAFPSRMTIGMFVESMAGK 957
>gi|358398287|gb|EHK47645.1| hypothetical protein TRIATDRAFT_132650 [Trichoderma atroviride IMI
206040]
Length = 1230
Score = 673 bits (1737), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 384/913 (42%), Positives = 540/913 (59%), Gaps = 90/913 (9%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR+ +Y GKL A F+Y G + GQ P+M+K+ RCHL+ LV K
Sbjct: 118 CRERHATYRGKLSA--TFEYDINGGDTIEFTRELGQVPIMIKSNRCHLENNSPDLLVRRK 175
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
EE+ E+GGYFI+NG E++ R + + K+N+PM++ R SF +R GYT +++R VR D++
Sbjct: 176 EESEELGGYFIVNGNEKIIRLLQMNKRNFPMAINRPSFTNRGAGYTTYGIILRSVRPDET 235
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
S T L+YL +G+V F + EYL+PV ++LKALV+TND EIF L K
Sbjct: 236 SQTNVLHYLKDGNVTFRFSWRKNEYLIPVIMILKALVETNDREIFEGLIGPMGSK----- 290
Query: 218 GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRD 277
A + +++RV+++L + L ++ + ++G+ F+ V+ ++ S Y V +R
Sbjct: 291 -AAKNTFLTDRVELLLRTYKAYRLYSKSETRAYLGQKFRVVLGVPETMSDYEVGTEFLRR 349
Query: 278 YIFVHLNDNN-------DKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITI 330
+ VHL + + DKF +++FM++KL++L DNPD++QNQEILL G L
Sbjct: 350 IVCVHLGNVDVTEKQDLDKFQMVLFMIRKLYALAAGECAVDNPDAIQNQEILLGGFLYGQ 409
Query: 331 YLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVME------KNPSKQIGTSIET 384
LKE+L+D+L ++ I + ++ N + + E + ++ I +E
Sbjct: 410 ILKERLDDFLGTS---VRGAIRDYLRRHPAVNFTSEEFKKEFPGGIFRKSNENIANGLEY 466
Query: 385 MLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPE 444
L TG L + +GLDLQQ AG+TV AE+LNFLRFIS FR VHRGA FA L+TT+VRKLLPE
Sbjct: 467 FLSTGNLVSPSGLDLQQTAGFTVVAEKLNFLRFISHFRMVHRGAFFAQLKTTAVRKLLPE 526
Query: 445 SWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPS 504
SWGF+CPVHTPDG PCGLLNHMT C++ + + N+ V + +
Sbjct: 527 SWGFMCPVHTPDGSPCGLLNHMTHKCKIMTDHLDVSNVPAL-------------VAELGA 573
Query: 505 LPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLS 564
+ S +V+ ++LDG+V+G E ++ LR KV +P LE+GYVP S
Sbjct: 574 VETSSASTDESVV-IMLDGKVIGWSTPKESLRIADCLRYWKVEGTHRVPLQLEIGYVPPS 632
Query: 565 LGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRN 623
GG+YPGLYL ++P + VRPV+ + L E+ +GP EQ +M I P + G
Sbjct: 633 NGGSYPGLYLSSTPARMVRPVKYLPLQKED-----FVGPHEQPYMSIAVVPQEIESGV-- 685
Query: 624 AFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLY 683
+TH E PT MLS++AN+TP+SD NQSPRNMYQCQM KQTMG A++ R D K Y
Sbjct: 686 ---STHVEYDPTNMLSILANMTPFSDFNQSPRNMYQCQMGKQTMGTPGTAIRHRTDNKSY 742
Query: 684 HLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQ 743
+QT QTPIVR + YG D +P G NA+VAV++YTGYDM+DAMI+NKS+ +RG HG
Sbjct: 743 RIQTGQTPIVRAPLHNTYGFDNFPNGMNAVVAVISYTGYDMDDAMIINKSAHERGFGHGT 802
Query: 744 IYQTETIDLSDDGNKVDRGQKLFRRNKDAKSL--------HS--------VIDSDGLPYV 787
+Y+T+ I L DD R + AKS+ HS ++D DGLP+V
Sbjct: 803 VYKTKKITLKDDS-----------RTRAAKSVVKMFGFAPHSYVSAAYQGMLDDDGLPHV 851
Query: 788 GQMIHPGEPYCSIYDKTTNSWRTN-----------SRKGSESVFVDYVAVDMKNSKNLP- 835
G+M+ + C+ Y T + N K SE F++ V + S + P
Sbjct: 852 GRMVKEDDVLCA-YHTVTPDYNGNLVNLDGITHYEKYKDSEVGFIEEVRLIGAESGSEPL 910
Query: 836 QKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSR 895
Q +I+ R R+P+IGDKFSSRHGQKGV SQ WP DMPFS TG++PD+IINPHAFPSR
Sbjct: 911 QTISIKIRIPRSPVIGDKFSSRHGQKGVLSQKWPATDMPFS-ETGIQPDVIINPHAFPSR 969
Query: 896 MTIAMLLESVAAK 908
MTI M +ES+A K
Sbjct: 970 MTIGMFVESLAGK 982
>gi|397465560|ref|XP_003804559.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 3
[Pan paniscus]
Length = 1070
Score = 672 bits (1735), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/873 (42%), Positives = 516/873 (59%), Gaps = 41/873 (4%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR + +Y GKL AD+ + ++++ G P+M+K++ C+L+ Q L+
Sbjct: 38 CRGRRSTYRGKLTADINWAVNGISKGIIKQFL--GYVPIMVKSKLCNLRNLPPQALIEHH 95
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
EEA EMGGYFI+NG+E+V R +I+P++N+P++M+R ++ R GYT V + CVR++ S
Sbjct: 96 EEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWKTRGPGYTQYGVSMHCVREEHS 155
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
+V + L+YL NG+V L F + + + LP+G LKALV +D +IF L KE
Sbjct: 156 AVNMNLHYLENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELI------KGKED 209
Query: 218 GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRD 277
+ VS+ ++I++ E T+ Q L ++GE F+ ++ AE +
Sbjct: 210 DSFLRNSVSQMLRIVMEE----GCLTQKQVLNYLGECFRVKLNVPDWYPNEQAAEFLFNQ 265
Query: 278 YIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLE 337
I +HL N +KF +L M +KLF+L + DNPDSL NQE+L PG L ++LKEKLE
Sbjct: 266 CICIHLKSNTEKFYMLCLMTRKLFALAKGECMEDNPDSLVNQEVLTPGQLFLMFLKEKLE 325
Query: 338 DWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGL 397
WL K + + + NL I + + E + TG L ++TGL
Sbjct: 326 GWLVSIKIAFDKKAQKTSVSMNTDNLMKIFTM-----GIDLTKPFEYLFATGNLRSKTGL 380
Query: 398 DLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDG 457
L Q +G V A++LNF+R++S FR VHRGA FA +RTT+VR+LLPESWGFLCPVHTPDG
Sbjct: 381 GLLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVRRLLPESWGFLCPVHTPDG 440
Query: 458 EPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVL 517
EPCGL+NH+T+ C V + + +I L +GV I P S
Sbjct: 441 EPCGLMNHLTAVCEVVTQFVYTASI--------PALLCNLGVTPIDGAPHRSYS---ECY 489
Query: 518 SVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGA-YPGLYLFT 576
VLLDG +VG + + LR KV IP +EV +P++ + YPGL+LFT
Sbjct: 490 PVLLDGVMVGWVDKDLAPGITDSLRHFKVLREKRIPPWMEVVLIPMTGKPSLYPGLFLFT 549
Query: 577 SPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIHPTG 636
+P + VRPV+N+ L EE LIG EQ+FM + + A TH+E+ P
Sbjct: 550 TPCRLVRPVQNLELGKEE-----LIGTMEQIFMNVAIFED----EVFAGVTTHQELFPHS 600
Query: 637 MLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTN 696
+LSV+AN P+SDHNQSPRNMYQCQM KQTMGF + + R+D KLY LQTPQ+P+VR +
Sbjct: 601 LLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPS 660
Query: 697 TYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDG 756
Y Y +D YP GTNAIVAV++YTGYDMEDAMI+NK+S +RG HG +Y++E IDLS+
Sbjct: 661 MYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKI 720
Query: 757 NKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGS 816
+ D + D + L +D DGLP++G + G+PY S + T K
Sbjct: 721 KQGDSSLVFGIKPGDPRVLQK-LDDDGLPFIGAKLQYGDPYYSYLNLNTGESFVMYYKSK 779
Query: 817 ESVFVDYVAVDMKNSKNLPQKA-NIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPF 875
E+ VD + V ++ + K I R RNP IGDKF+SRHGQKG+ S+LWP DMPF
Sbjct: 780 ENCVVDNIKVCSNDTGSGKFKCVCITMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPF 839
Query: 876 SGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
+ +GM PD++ NPH FPSRMTI ML+ES+A K
Sbjct: 840 TE-SGMVPDILFNPHGFPSRMTIGMLIESMAGK 871
>gi|34535223|dbj|BAC87247.1| unnamed protein product [Homo sapiens]
Length = 1135
Score = 672 bits (1735), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/943 (40%), Positives = 536/943 (56%), Gaps = 87/943 (9%)
Query: 12 LRELVRHHIESFDYMLDEGLS--------------------EMFD--------------- 36
L+EL R H+ESF+Y + EGL + D
Sbjct: 35 LQELTRAHVESFNYAVHEGLGLAVQAIPPFEFAFKDERISFTILDAVISPPTVPKGTICK 94
Query: 37 -------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGAD 89
CR + +Y GKL AD+ + ++++ G P+M+K++ C+L+
Sbjct: 95 EANVYPAECRGRRSTYRGKLTADINWAVNGISKGIIKQFL--GYVPIMVKSKLCNLRNLP 152
Query: 90 SQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVI 149
Q L+ EEA EMGGYFI+NG+E+V R +I+P++N+P++M+R ++ R GYT V +
Sbjct: 153 PQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWKTRGPGYTQYGVSM 212
Query: 150 RCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY 209
CVR++ S+V + L+YL NG+V L F + + + LP+G LKALV +D +IF L
Sbjct: 213 HCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELI--- 269
Query: 210 DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYA 269
KE + VS+ ++I++ E +T+ Q L ++GE F+ ++
Sbjct: 270 ---KGKEDDSFLRNSVSQMLRIVMEE----GCSTQKQVLNYLGECFRVKLNVPDWYPNEQ 322
Query: 270 VAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
AE + I +HL N +KF +L M +KLF+L + DNPDSL NQE+L PG L
Sbjct: 323 AAEFLFNQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMEDNPDSLVNQEVLTPGQLFL 382
Query: 330 IYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTG 389
++LKEKLE WL K + + + NL I + + E + TG
Sbjct: 383 MFLKEKLEGWLVSIKIAFDKKAQKTSVSMNTDNLMRIFTM-----GIDLTKPFEYLFATG 437
Query: 390 RLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFL 449
L ++TGL L Q +G V A++LNF+R++S FR VHRGA FA +RTT+VR+LLPESWGFL
Sbjct: 438 NLRSKTGLGLLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVRRLLPESWGFL 497
Query: 450 CPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLV 509
CPVHTPDGEPCGL+NH+T+ C V + + +I L +GV I P
Sbjct: 498 CPVHTPDGEPCGLMNHLTAVCEVVTQFVYTASI--------PALLCNLGVTPIDGAPHRS 549
Query: 510 KSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGA- 568
S VLLDG +VG + + LR KV IP +EV +P++ +
Sbjct: 550 YS---ECYPVLLDGVMVGWVDKDLAPGIADSLRHFKVLREKRIPPWMEVVLIPMTGKPSL 606
Query: 569 YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPAT 628
YPGL+LFT+P + VRPV+N++L EE LIG EQ+FM + + A T
Sbjct: 607 YPGLFLFTTPCRLVRPVQNLALGKEE-----LIGTMEQIFMNVAIFED----EVFAGVTT 657
Query: 629 HEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTP 688
H+E+ P +LSV+AN P+SDHNQSPRNMYQCQM KQTMGF + + R+D KLY LQTP
Sbjct: 658 HQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTP 717
Query: 689 QTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTE 748
Q+P+VR + Y Y +D YP GTNAIVAV++YTGYDMEDAMI+NK+S +RG HG +Y++E
Sbjct: 718 QSPLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSE 777
Query: 749 TIDLSDDGNKVDRGQK--LFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTN 806
IDLS+ K+ +G +F + +D DGLP++G + G+PY S + T
Sbjct: 778 FIDLSE---KIKQGDSSLVFGIKPGGPRVLQKLDDDGLPFIGAKLQYGDPYYSYLNLNTG 834
Query: 807 SWRTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHTRNPIIGDKFSSRHGQKGVCS 865
K E+ VD + V ++ + K I R RNP IGDKF+SR GQKG+ S
Sbjct: 835 ESFVMYYKSKENCVVDNIKVCSNDTGSGKFKCVCITMRVPRNPTIGDKFASRRGQKGILS 894
Query: 866 QLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
+LWP DMPF+ +GM PD++ NPH FPSRMTI ML+ES+A K
Sbjct: 895 RLWPAEDMPFTE-SGMVPDILFNPHGFPSRMTIGMLIESMAGK 936
>gi|402891936|ref|XP_003909184.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 3
[Papio anubis]
Length = 1070
Score = 672 bits (1734), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/877 (42%), Positives = 518/877 (59%), Gaps = 49/877 (5%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR + +Y GKL AD+ + ++++ G P+M+K++ C+L Q L+
Sbjct: 38 CRGRRSTYRGKLTADINWAVNGISKGIIKQ--CLGYVPIMVKSKLCNLHSLPPQALIEHH 95
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
EEA EMGGYFI+NG+E+V R +I+P++N+P++M+R ++ R GYT V + CVR++ S
Sbjct: 96 EEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWKTRGPGYTQYGVSMHCVREEHS 155
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
+V + L+YL NG+V L F + + + LP+G LKALV +D +IF L KE
Sbjct: 156 AVNMNLHYLENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELI------KGKED 209
Query: 218 GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRD 277
+ VS+ ++I++ E +T+ Q L ++GE F+ ++ AE +
Sbjct: 210 DSFLRNSVSQMLRIVMEE----GCSTQKQVLNYLGECFRVKLNVPDWYPNEQAAEFLFNQ 265
Query: 278 YIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLE 337
I +HL + +KF +L M +KLF+L + DNPDSL NQE+L PG L ++LKEKLE
Sbjct: 266 CICIHLKSSTEKFYMLCLMTRKLFALAKGECMEDNPDSLVNQEVLTPGQLFLMFLKEKLE 325
Query: 338 DWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGL 397
WL K + + + NL I + + E + TG L ++TGL
Sbjct: 326 GWLVSIKIAFDKKAQKTNVSMNTDNLMRIFTM-----GIDLTKPFEYLFATGNLRSKTGL 380
Query: 398 DLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDG 457
L Q +G V A++LNF+R++S FR VHRGA FA +RTT+VR+LLPESWGFLCPVHTPDG
Sbjct: 381 GLLQNSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVRRLLPESWGFLCPVHTPDG 440
Query: 458 EPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVL 517
EPCGL+NH+T+ C V + + SI +L +G+ P V P
Sbjct: 441 EPCGLMNHLTAVCEVVTQF----------VYTASIPALLCNLGVTP-----VDGAPHRPY 485
Query: 518 S----VLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGA-YPGL 572
S VLLDG +VG + + LR KV IP +EV +P++ + YPGL
Sbjct: 486 SECYPVLLDGVMVGWVDKELAPGIADSLRHFKVLREKRIPPWMEVVLIPMTGKPSLYPGL 545
Query: 573 YLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEI 632
+LFT+P + VRPV+N+ L EE LIG EQ+FM + + A TH+E+
Sbjct: 546 FLFTTPCRLVRPVQNLELGKEE-----LIGTMEQIFMNVAIFED----EVFAGVTTHQEL 596
Query: 633 HPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPI 692
P +LSV+AN P+SDHNQSPRNMYQCQM KQTMGF + + R+D KLY LQTPQ+P+
Sbjct: 597 FPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTPQSPL 656
Query: 693 VRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDL 752
VR + Y Y +D YP GTNAIVAV++YTGYDMEDAMI+NK+S +RG HG +Y++E IDL
Sbjct: 657 VRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDL 716
Query: 753 SDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNS 812
S+ + D + D + L +D DGLP++G + G+PY S + T
Sbjct: 717 SEKIKQGDSSLVFGIKPGDPRVLQK-LDDDGLPFIGAKLQYGDPYYSYLNLNTGESFVMY 775
Query: 813 RKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDI 871
K E+ VD + V ++ + K I R RNP IGDKF+SRHGQKG+ S+LWP
Sbjct: 776 YKSKENCVVDNIKVCSNDTGSGKFKCVCITMRVPRNPTIGDKFASRHGQKGILSRLWPAE 835
Query: 872 DMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
DMPF+ +GM PD++ NPH FPSRMTI ML+ES+A K
Sbjct: 836 DMPFTE-SGMVPDILFNPHGFPSRMTIGMLIESMAGK 871
>gi|10433976|dbj|BAB14082.1| unnamed protein product [Homo sapiens]
Length = 1079
Score = 672 bits (1733), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/899 (41%), Positives = 528/899 (58%), Gaps = 55/899 (6%)
Query: 12 LRELVRHHIESFDYMLDEGLSEMFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNF 71
L+EL R H+ESF+Y + EGL QA I++ ++ S + ++F
Sbjct: 35 LQELTRAHVESFNYAVHEGLGLAV----QADINWA-----------VNGISKGIIKQF-L 78
Query: 72 GQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMV 131
G P+M+K++ C+L+ Q L+ EEA EMGGYFI+NG+E+V R +I+P++N+P++M+
Sbjct: 79 GYVPIMVKSKLCNLRNLPPQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMI 138
Query: 132 RSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLK 191
R ++ R GYT V + CVR++ S+V + L+YL NG+V L F + + + P+G LK
Sbjct: 139 RPKWKTRGPGYTQYGVSMHCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFRPLGFALK 198
Query: 192 ALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHI 251
ALV +D +IF L KE + VS+ ++I++ E T+ Q L ++
Sbjct: 199 ALVSFSDYQIFQELI------KGKEDDSFLRNSVSQMLRIVMEE----GCLTQKQVLNYL 248
Query: 252 GEHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSD 311
GE F+ ++ AE + I +HL N +KF +L M +KLF+L + D
Sbjct: 249 GECFRVKLNVPDWYPNEQAAEFLFNQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMED 308
Query: 312 NPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVME 371
NPDSL NQE+L PG L ++LKEKLE WL K + + + NL I +
Sbjct: 309 NPDSLVNQEVLTPGQLFLMFLKEKLEGWLVSIKIAFDKKAQKTSVSMNTDNLMRIFTM-- 366
Query: 372 KNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFA 431
+ E + TG L ++TGL L Q +G V A++LNF+R++S FR VHRGA FA
Sbjct: 367 ---GIDLTKPFEYLFATGNLRSKTGLGLLQDSGLCVVADKLNFIRYLSHFRCVHRGADFA 423
Query: 432 GLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTS 491
+RTT+VR+LLPESWGFLCPVHTPDGEPCGL+NH+T+ C V + + +I
Sbjct: 424 KMRTTTVRRLLPESWGFLCPVHTPDGEPCGLMNHLTAVCEVVTQFVYTASI--------P 475
Query: 492 ILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASV 551
L +GV I P S VLLDG +VG + + LR KV
Sbjct: 476 ALLCNLGVTPIDGAPHRSYS---ECYPVLLDGVMVGWVDKDLAPGIADSLRHFKVLREKR 532
Query: 552 IPDDLEVGYVPLSLGGA-YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFME 610
IP +EV +P++ + YPGL+LFT+P + VRPV+N++L EE LIG EQ+FM
Sbjct: 533 IPPWMEVVLIPMTGKPSLYPGLFLFTTPCRLVRPVQNLALGKEE-----LIGTMEQIFMN 587
Query: 611 IRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFS 670
+ + A TH+E+ P +LSV+AN P+SDHNQSPRNMYQCQM KQTMGF
Sbjct: 588 VAIFED----EVFAGVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFP 643
Query: 671 VQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMIL 730
+ + R+D KLY LQTPQ+P+VR + Y Y +D YP GTNAIVAV++YTGYDMEDAMI+
Sbjct: 644 LLTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIV 703
Query: 731 NKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQM 790
NK+S +RG HG +Y++E IDLS+ + D + D + L +D DGLP++G
Sbjct: 704 NKASWERGFAHGSVYKSEFIDLSEKIKQGDSSLVFGIKPGDPRVLQK-LDDDGLPFIGAK 762
Query: 791 IHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHTRNPI 849
+ G+PY S + T K E+ VD + V ++ + K I R RNP
Sbjct: 763 LQYGDPYYSYLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGKFKCVRITMRVPRNPT 822
Query: 850 IGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
IGDKF+SRHG+KG+ S+LWP DMPF+ +GM PD++ NPH FPSRMTI ML+ES+A K
Sbjct: 823 IGDKFASRHGRKGILSRLWPAEDMPFTE-SGMVPDILFNPHGFPSRMTIGMLIESMAGK 880
>gi|427782465|gb|JAA56684.1| Putative rna polymerase ii second largest subunit [Rhipicephalus
pulchellus]
Length = 1059
Score = 671 bits (1730), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 371/879 (42%), Positives = 531/879 (60%), Gaps = 50/879 (5%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR +Y GKL V + V++ G+ P+M+K++ C++ +LV
Sbjct: 28 CRNRGTTYRGKLDVTVVWSVNGVHQDTVKK--TVGEVPIMVKSQVCNIAKMSPAELVKRG 85
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
EEA E GGYF++NG E++ R +I+ ++NYP++MVR S+++R + +++ V +R V+ DQ+
Sbjct: 86 EEAGEFGGYFVVNGNEKIIRMLIMTRRNYPIAMVRPSWKNRGKMFSEYGVSLRSVKPDQT 145
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
+ L+YL NG+V++ F + + +PV ++LKAL D +D I++ L +E K
Sbjct: 146 GTNMVLHYLTNGTVQVMFSYMKELFFMPVMMLLKALCDVSDHHIYSELIAGKEED-SFFK 204
Query: 218 GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRD 277
G + + +L +VQ+ L TR Q +IGE F+ + + S VA ++R
Sbjct: 205 GCIIN---------MLRQVQNEGLLTRDQVRAYIGEKFRICMRLPEWYSDEEVAVFLLRH 255
Query: 278 YIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLE 337
I VH N DKFNL++ M++KLF++ ++ D+ N EILL GHL + LKEKL
Sbjct: 256 CICVHTESNIDKFNLILLMIRKLFAVAKGECAIESTDNPMNHEILLAGHLYLMVLKEKLS 315
Query: 338 DWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGL 397
+L ++ I+ + ++ G F ++AN + + S + +++ L TG + T+TGL
Sbjct: 316 GFLYSIRQNIEKKAKSTGSAFKL-SMANFSRALAT--SWDLTSAMNYFLATGNVVTKTGL 372
Query: 398 DLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDG 457
L Q G TV AE+LN+ R++S FR VHRGA FA +RTT+VRKLLPE+WGFLCPVHTPDG
Sbjct: 373 GLMQFTGTTVIAEKLNYWRYLSHFRCVHRGAFFAEMRTTTVRKLLPEAWGFLCPVHTPDG 432
Query: 458 EPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIP---SLPKLVKSGPP 514
PCGLLNHMT+ V ++ G++ +L G+GM P P + +S
Sbjct: 433 APCGLLNHMTALVEVVNHQFPTGHLPS----------LLAGLGMAPLDGIRPNVAES--- 479
Query: 515 AVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVP-LSLGGAYPGLY 573
V+LDGRV+G + S +E +V LR +K +P LE+G+VP S YPG++
Sbjct: 480 --YVVVLDGRVLGYVEDSSVENMVTSLRTMKACGLEKVPQTLEIGFVPKTSQASQYPGVF 537
Query: 574 LFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPA--THEE 631
LFTS + +RPV N+ + IE IG FEQV + I R A+ TH+E
Sbjct: 538 LFTSVARMMRPVLNM-----RTDTIEWIGTFEQVHLSICVV------RDEAYEGITTHQE 586
Query: 632 IHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTP 691
+ T MLS++AN+ PYSD NQSPRNMYQCQM KQTMG QAL++R+D KLY +QTPQTP
Sbjct: 587 LRQTSMLSLLANMIPYSDFNQSPRNMYQCQMGKQTMGTPCQALRYRSDNKLYRIQTPQTP 646
Query: 692 IVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETID 751
+VR Y Y +DEYPTGTNAIVAV++YTGYDMEDAM+LNKSSV+RG HG IY++E ++
Sbjct: 647 LVRPTAYDHYDMDEYPTGTNAIVAVISYTGYDMEDAMVLNKSSVERGFKHGSIYKSEVVN 706
Query: 752 LSDDGNKVDRGQKL-FRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRT 810
L V R L F R + L ID DGLPY+G + +P CS + T +
Sbjct: 707 LRVLAGDVGRQVSLVFGRKMTDRHLEGHIDLDGLPYIGTKVEHNQPVCSFINIVTGETKV 766
Query: 811 NSRKGSESVFVDYVAVDMKNS-KNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWP 869
+ K E+ +V V + ++ ++ Q I + RNP+IGDKF+SRHGQKGVCS L P
Sbjct: 767 HKYKNMEAGYVHEVKLLGNDTGTDVLQAVCITYWIQRNPMIGDKFASRHGQKGVCSLLLP 826
Query: 870 DIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
+MPF+ +GM PD+I NPH FPSRMTI M++ES+A K
Sbjct: 827 VENMPFTE-SGMTPDIIFNPHGFPSRMTIGMMIESMAGK 864
>gi|378731691|gb|EHY58150.1| DNA-directed RNA polymerase I subunit RPA2 [Exophiala dermatitidis
NIH/UT8656]
Length = 1219
Score = 671 bits (1730), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/911 (41%), Positives = 541/911 (59%), Gaps = 82/911 (9%)
Query: 37 HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
CR+ +Y GKL ++++ ++ G R + GQ P+ML++ RCHL+ ++V
Sbjct: 118 ECRERHATYRGKLRLRLQYR-INNGDWKESVR-DVGQMPIMLRSNRCHLEKFSPAEMVRH 175
Query: 97 KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQ 156
KEE+ E+GGYFI+NG E++ R +I ++NYPM++ R++F R ++ + IR VR DQ
Sbjct: 176 KEESEELGGYFIVNGNEKLIRMLIASRRNYPMAIARNAFTARGPTFSKFGIQIRSVRPDQ 235
Query: 157 SSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKE 216
+S T L+YL +G+V F + EYL+PV ++LKALV+TND EI +
Sbjct: 236 TSQTNVLHYLTDGNVTFRFSWRKNEYLVPVVMILKALVETNDREIAEGIIGT------AS 289
Query: 217 KGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIR 276
S VS+R +++L + +L TR Q L ++G+ F+PV+ + V E +R
Sbjct: 290 GSTTPSSFVSDRTELLLRTYKAYNLKTRAQTLAYLGDKFRPVLGNPITMPDEKVGEDFLR 349
Query: 277 DYIFVHLND-------NNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
+ HL + NNDKF L+++M++KL++L DNPD++ NQEILL G L
Sbjct: 350 KIVLPHLGNVDVTPAQNNDKFQLILYMIRKLYALAAGDCTLDNPDAVSNQEILLGGFLYG 409
Query: 330 IYLKEKLEDWLRKGKKLIQDEIE-NNGKKFD--FFNLANIKKVMEKNPSKQIGTSIETML 386
+ LKE + DWL ++ I NG F F+ + KV+ + ++ + +E L
Sbjct: 410 MILKESIYDWLVSIGGAAREWIRMKNGATFADPSFDTDFLPKVVRRT-NENLAGRLEYFL 468
Query: 387 KTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESW 446
TG L +QTGLDL Q +G+T+ AE++NF RFIS FR +HRG FA L+TT+VRKLLPESW
Sbjct: 469 STGNLVSQTGLDLSQTSGFTIVAEKINFYRFISHFRCIHRGTFFAQLKTTTVRKLLPESW 528
Query: 447 GFLCPVHTPDGEPCGLLNHMTSTCRVA-SYYDSRGNIRDFSKMRTSILRVLIGVGMIPSL 505
GFLCPVHTPDG PCGLLNH+ C V D+ G + S+ G+ +P++
Sbjct: 529 GFLCPVHTPDGSPCGLLNHLAHQCMVQIKRIDTTGVEKAISQF---------GLSPVPAM 579
Query: 506 PKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSL 565
VK+ LSV LDGR++G P +++ LR KV+ IP +LE+G+VP S
Sbjct: 580 D--VKNS----LSVQLDGRILGYCPVKRAQEISQLLRHWKVNGEHGIPTELEIGFVPTSN 633
Query: 566 GGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAF 625
GG YPGLYLFT P + +RPV+ I+ S ++ +GPFEQ +M I C D +
Sbjct: 634 GGLYPGLYLFTDPSRMLRPVKYIA-----SDKLDYVGPFEQQYMNIACVDA------DII 682
Query: 626 P--ATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLY 683
P TH E PT +LS++AN+TP+SD NQSPRNMYQCQM+KQ MG + R D K Y
Sbjct: 683 PNLTTHIEYKPTNILSILANMTPFSDFNQSPRNMYQCQMSKQAMGTPSSNMMCRTDNKAY 742
Query: 684 HLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQ 743
LQT QTP+VR Y +YG+D +P G NA+VAV++YTGYDM+DAMI+NKS+ +RG G
Sbjct: 743 LLQTGQTPVVRPPLYNEYGLDNFPNGMNAVVAVISYTGYDMDDAMIINKSAHERGFGDGV 802
Query: 744 IYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHS--------------VIDSDGLPYVGQ 789
IY+T+ +L++ + R + KSL +D DGLP VG
Sbjct: 803 IYKTKVYELNEK-------SRSSRSKTEIKSLFGFAEGDPNISETVLQTLDPDGLPAVGT 855
Query: 790 MIHPGE---PYCSI-YDKTTNSWRT---NSR----KGSESVFVDYVAVDMKNSKNLP-QK 837
+ G Y S+ +D + + N++ K +E ++D + + + + P Q
Sbjct: 856 KVSEGSVVLAYHSVMFDPSEGKLKNLDGNTKYFKYKDAEEAYIDQIRLIGTETGDQPCQA 915
Query: 838 ANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMT 897
+I++R R PIIGDKFSSRHGQKGVCS LWP DMPFS +G++PD+IINPHAFPSRMT
Sbjct: 916 ISIKYRIPRRPIIGDKFSSRHGQKGVCSMLWPSQDMPFS-ESGIQPDVIINPHAFPSRMT 974
Query: 898 IAMLLESVAAK 908
I M +ES+A K
Sbjct: 975 IGMFVESLAGK 985
>gi|440473458|gb|ELQ42252.1| DNA-directed RNA polymerase I subunit RPA2 [Magnaporthe oryzae Y34]
gi|440488870|gb|ELQ68559.1| DNA-directed RNA polymerase I subunit RPA2 [Magnaporthe oryzae
P131]
Length = 1192
Score = 671 bits (1730), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/937 (41%), Positives = 560/937 (59%), Gaps = 72/937 (7%)
Query: 9 FEPLRELVRHHIESFDYML-DEGLSEMFDHC-RQAKISY---TGKLMADVEFQYLDAGSP 63
+ L+ V HIESF+ + D+G + DH R Y M E L +
Sbjct: 33 YPALQTAVNPHIESFNALFRDDGKPGLIDHAIRDIGTKYFLDGDASMPSSERNRLSINNG 92
Query: 64 VVRERF-NFGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILP 122
++E + GQ P+M+K+ RCHL+G LV KEE+ E+GGYFI+NG E++ R ++L
Sbjct: 93 ELKECVRDIGQMPIMVKSNRCHLEGNSPALLVQRKEESEELGGYFIVNGNEKIIRLLLLN 152
Query: 123 KQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEY 182
++N+P+++ R SF++R YT +++R VR D++S T L+YL +G+V F + EY
Sbjct: 153 RRNFPLAINRPSFQNRGPAYTPYGIILRSVRPDETSQTNVLHYLNDGNVTFRFSWRKNEY 212
Query: 183 LLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLT 242
L+PV ++LKALV+TND EIF L K VG+ +++RV+++L + L
Sbjct: 213 LVPVMMILKALVETNDSEIFEGLCGPPGSK------GVGNSFLTDRVELLLRTYKSYGLY 266
Query: 243 TRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDNN-------DKFNLLIF 295
++ + ++GE F+ V+ S S+Y V ++ + VHL ++ DKF +++
Sbjct: 267 SKTKTRAYLGEKFRVVLGVQDSMSHYDVGTEFLKKIVLVHLGSHDVTEQEDADKFRMILV 326
Query: 296 MLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKG-KKLIQDEIENN 354
M++KL++LV DNPD++QNQEILL G+L + LKE+LE+++ + ++D + +
Sbjct: 327 MMRKLYALVAGECAVDNPDAVQNQEILLGGYLYGMILKERLEEFVAVSLRAALRDYLRRS 386
Query: 355 GKKFDFFNLANIKKVMEKN----PSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAE 410
+ F A +K N ++ +G S+E L TG L + +GLDLQQ +G+ V AE
Sbjct: 387 --PANTFTSAAFEKDFPANIFRRTNENLGNSLEYFLSTGNLQSPSGLDLQQTSGFVVVAE 444
Query: 411 RLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTC 470
+LNFLRFIS FR VHRG+ FA L+TT+VRKLLPESWGFLCPVHTPDG PCGLLNH+ C
Sbjct: 445 KLNFLRFISHFRMVHRGSFFAQLKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHLAHKC 504
Query: 471 RVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIP 530
++ + + D S +I R+ +G++ + + P V+LDG+++G
Sbjct: 505 KIMT------DAVDVS----AIPRLATELGVVDTSSADTEESVP----VMLDGKILGWCS 550
Query: 531 SSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISL 590
+ + LR KV + +P +E+G VP S GG+YPG+Y+ + P + VRPV+ + L
Sbjct: 551 PKQSRTIADTLRYWKVEGSHGVPVHMEIGLVPPSNGGSYPGIYMASQPSRMVRPVKYLPL 610
Query: 591 PSEESQNIELIGPFEQVFMEIRC--PDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYS 648
E+ +G EQ +M I C P+ G +TH E PT MLS++AN+TP+S
Sbjct: 611 EKED-----YVGTHEQPYMSIACTEPEIVSG------ESTHVEFDPTNMLSILANMTPFS 659
Query: 649 DHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPT 708
D NQSPRNMYQCQM KQTMG A+ R D K+Y +QT QTPIVR + +YG D +P
Sbjct: 660 DFNQSPRNMYQCQMGKQTMGTPGAAISRRTDNKMYRIQTGQTPIVRAPLHNEYGFDNFPN 719
Query: 709 GTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDG--NKVDRGQKLF 766
G NA+VAV++YTGYDM+DAMI+NKS+ +RG HG IY+T+ I L DD K+F
Sbjct: 720 GMNAVVAVISYTGYDMDDAMIINKSAHERGFGHGTIYKTKKITLKDDSRTRSTKHITKMF 779
Query: 767 ----RRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTN-SWRTNSRKG------ 815
A+ L +D DGLP +G + G+ + + + + S + +R G
Sbjct: 780 GFAPNTTVKARDLEK-LDLDGLPRIGSKVEQGDIIAAWHTVSADYSDQLVNRDGLTHYEK 838
Query: 816 ---SESVFVDYV-AVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDI 871
SE+ FV+ + V +N Q +I+FR R+P+IGDKFSSRHGQKGV SQ WP I
Sbjct: 839 YKDSETAFVEEIRLVGNENGTEPLQTVSIKFRIPRSPVIGDKFSSRHGQKGVASQKWPMI 898
Query: 872 DMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
DMPFS +GM+PD+IINPHAFPSRMTI M +ES+A K
Sbjct: 899 DMPFS-ESGMQPDVIINPHAFPSRMTIGMFVESLAGK 934
>gi|118396434|ref|XP_001030557.1| DNA-directed RNA polymerase, beta subunit family protein
[Tetrahymena thermophila]
gi|89284864|gb|EAR82894.1| DNA-directed RNA polymerase, beta subunit family protein
[Tetrahymena thermophila SB210]
Length = 1178
Score = 670 bits (1728), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/914 (40%), Positives = 550/914 (60%), Gaps = 67/914 (7%)
Query: 28 DEGLSE----MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFN--FGQFPVMLKTR 81
D G++E M + CR + +Y L A V + +D G P E N G P+++++
Sbjct: 91 DSGVAEDNKLMPEECRIGRKTYGAPLFAKVA-RSIDGGKP---ESINIRLGDIPIIVRSD 146
Query: 82 RCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREG 141
CHL ++LV E+ E GGYFI+NG E++ R +IL K+NYP++ +R+ + +R
Sbjct: 147 HCHLAKMTPKELVKAHEDCNEFGGYFIVNGNEKIVRMLILQKRNYPIAFIRAGYVNRGPN 206
Query: 142 YTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEI 201
YT AV ++CVR+D S T+ L+Y+ +GSV L + +E+L+P ++LKAL D +DL+I
Sbjct: 207 YTPFAVQMKCVREDLYSKTITLHYVSDGSVFLRILHRKQEFLIPAIVILKALADISDLQI 266
Query: 202 FNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDG 261
+N L KG +S+RV++++ + +SL T+ +CL H+G++F+ V++
Sbjct: 267 YNKLV----------KGQSSKSAISDRVEVLIRGSKAMSLNTKEECLAHLGKNFRVVLNI 316
Query: 262 LQSE-SYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQE 320
E + V E + + I VHLN+N DK N + M+ KL++LV DN DSLQNQE
Sbjct: 317 TNPEITDKQVGEIFMNENICVHLNNNIDKLNTICVMISKLYALVSDEICPDNLDSLQNQE 376
Query: 321 ILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGT 380
+LLPGHL + L+EKLE+ L + + + + ++A +KK +E S IG
Sbjct: 377 VLLPGHLYMMILREKLEEMLLGIRAKVFKDGSRPEEAIRIPHIAYLKKAIEFQGS--IGN 434
Query: 381 SIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRK 440
IE L TG L +QTGLDL Q G+T+ A++LN +RF+S FR+VHRGA F ++TT+VRK
Sbjct: 435 KIEYFLSTGNLKSQTGLDLMQAKGFTIIADKLNNMRFLSHFRSVHRGAYFTEMKTTTVRK 494
Query: 441 LLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVG 500
LLPE+WGF+CPVHTPDG PCGLLNH++ +C+ + GNI +++ + +G
Sbjct: 495 LLPENWGFICPVHTPDGGPCGLLNHISQSCKPLTRPGYDGNIH------FNLVTLCTEIG 548
Query: 501 MIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKV--SAASVIPDDLEV 558
M P + L PP ++++LDGRV+G I S + L+ LK+ +IP DLE+
Sbjct: 549 MNPIVNDLSIVFPPTSVTIMLDGRVIGYIESKNAQTFCQSLKYLKIMQDPTRLIPADLEI 608
Query: 559 GYVP---LSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPD 615
GYVP L +PG++L T+ +FVRPV+++ L + +E I PFEQV + I C +
Sbjct: 609 GYVPKLNLEKQNIFPGIFLHTNEARFVRPVKHLKLNA-----LEWITPFEQVHLSIACIE 663
Query: 616 GGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALK 675
RN ++E+ P+ +LS++ + P+ ++NQSPRNMYQCQMAKQTMG S+
Sbjct: 664 ED---IRN--DTEYQELSPSYILSILPSQIPFLNYNQSPRNMYQCQMAKQTMGTSMHNFP 718
Query: 676 FRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSV 735
+R D ++Y L Q P+V+ YG+ +YP+GTNAIVAV++YTGYDMEDAMILNKSS
Sbjct: 719 YRFDNRIYRLLNGQIPMVKGMDPESYGLSDYPSGTNAIVAVISYTGYDMEDAMILNKSSY 778
Query: 736 DRGMCHGQIYQTETIDLSDDGNKVDRGQKLFR--RNKDAKSLHSVIDSDGLPYVGQMIHP 793
+RG HG +Y+ + D+++ + + K+ +N D + ++ DG+P +G +I
Sbjct: 779 ERGFGHGCVYKNYSYDVAELNKEKNSKFKMLNEVKNIDKSQIAEGLEGDGIPAIGSVIKK 838
Query: 794 GEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDK 853
G IYD N+ +T K SE +D +A+ + + K + R R RNPIIGDK
Sbjct: 839 GTAVFQIYDTQKNAMKTFYHKDSELGRLDGIAL-VHDEKTKEPRVEYRIRIPRNPIIGDK 897
Query: 854 FSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTI--------------- 898
FSSRHGQKGV S LWP IDMPF+ +G+ PD+IINPHAFPSRMTI
Sbjct: 898 FSSRHGQKGVLSVLWPHIDMPFTE-SGITPDVIINPHAFPSRMTIGKFTLYSRRLTNQLN 956
Query: 899 ----AMLLESVAAK 908
ML+ES+A K
Sbjct: 957 FNKKGMLIESMAGK 970
>gi|410955304|ref|XP_003984296.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 3
[Felis catus]
Length = 1070
Score = 669 bits (1726), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 370/878 (42%), Positives = 521/878 (59%), Gaps = 51/878 (5%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR + +Y GKL AD+ + V+++ G P+M+K++ C+L + L+
Sbjct: 38 CRGRRSTYRGKLTADISWAVNGISKGVIKQFL--GYVPIMVKSKLCNLYNLPPKALIEHH 95
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
EEA EMGGYFI+NG+E+V R +I+P++N+P++MVR ++ R GYT V + CVR++ S
Sbjct: 96 EEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMVRPKWKTRGPGYTQYGVSMHCVREEHS 155
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
+V + L+YL NG+V L F + + + LP+G LKALV+ +D +IF L KE+
Sbjct: 156 AVNMNLHYLENGTVMLNFIYRKELFFLPLGFALKALVNFSDYQIFQELI------KGKEE 209
Query: 218 GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRD 277
+ +S+ ++I++ E +T+ Q L ++GE F+ + AE +
Sbjct: 210 DSFFRNSISQMLRIVMEE----GCSTQKQVLNYLGECFRVKLSLPDWYPNEQAAEFLFNQ 265
Query: 278 YIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLE 337
I +HL + +KF +L M +KLF+L + +NPDSL NQE+L PG L ++LKEK+E
Sbjct: 266 CICIHLKSSTEKFYMLCLMTRKLFALAKGECMEENPDSLVNQEVLTPGQLFLMFLKEKME 325
Query: 338 DWLRKGKKLIQDEIENNGKKFDF-FNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTG 396
WL I+ ++ +K + N N+ K+ + E +L TG L ++TG
Sbjct: 326 AWLVS----IKIALDKRAQKANVSINTENLMKIFSM--GTDLTKPFEYLLATGNLRSKTG 379
Query: 397 LDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPD 456
L Q +G V A++LNF+R++S FR VHRGA FA +RTT+VR+LLPESWGFLCPVHTPD
Sbjct: 380 LGFLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVRRLLPESWGFLCPVHTPD 439
Query: 457 GEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAV 516
GEPCGL+NH+T+ C V + + SI +L +G+ P V P
Sbjct: 440 GEPCGLMNHLTAVCEVVTQF----------VYTASIPALLCSLGVTP-----VDGAPHRP 484
Query: 517 LS----VLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGA-YPG 571
S VLLDG +VG + V LR KV IP +EV +P++ + YPG
Sbjct: 485 YSECYPVLLDGVMVGWVDKDLAPGVADSLRHFKVLREKRIPPWMEVALIPMTGKPSLYPG 544
Query: 572 LYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEE 631
L+LFT+P + VRPV+N+ L EE LIG EQ+FM I + A TH+E
Sbjct: 545 LFLFTTPCRLVRPVQNLELGKEE-----LIGTMEQIFMNIAIFED----EVLAGVTTHQE 595
Query: 632 IHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTP 691
+ P +LSV+AN P+SDHNQSPRNMYQCQM KQTMGF + + R+D KLY LQTPQ+P
Sbjct: 596 LFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQARSDNKLYRLQTPQSP 655
Query: 692 IVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETID 751
+VR Y Y +D YP GTNAIVAV++YTGYDMEDAMI+NK+S +RG HG +Y++E ID
Sbjct: 656 LVRPYMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFID 715
Query: 752 LSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTN 811
LS+ + D + D + L +D DGLP++G + G+PY + T
Sbjct: 716 LSEKIKQGDDSLVFGVKPGDPRVLQK-LDDDGLPFIGAQLKYGDPYYGYLNLNTGENFVI 774
Query: 812 SRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPD 870
K E+ VD + V ++ + K I R RNP IGDKF+SRHGQKG+ S+LWP
Sbjct: 775 YYKSKENCIVDNIKVCSNDTGSGKFKCICITMRVPRNPTIGDKFASRHGQKGILSRLWPA 834
Query: 871 IDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
DMPFS +GM PD++ NPH FPSRMTI ML+ES+A K
Sbjct: 835 EDMPFSE-SGMVPDILFNPHGFPSRMTIGMLIESMAGK 871
>gi|388582560|gb|EIM22864.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Wallemia sebi CBS 633.66]
Length = 1179
Score = 668 bits (1724), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/844 (42%), Positives = 519/844 (61%), Gaps = 40/844 (4%)
Query: 72 GQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMV 131
G PVM+++ RC+LQ S +LV EE+ EMGGYFI+NG E++ R +++P+++Y S++
Sbjct: 132 GSVPVMVRSERCNLQKMTSAELVQKHEESDEMGGYFIINGNEKLMRLLVVPRRHYVTSII 191
Query: 132 RSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLK 191
R SF +R YT+ V IRCVR DQ++ T ++YL NG L F + EY++PV +VLK
Sbjct: 192 RPSFANRGPTYTEYGVQIRCVRPDQTAATNTMHYLSNGGATLRFAWRKNEYMIPVVMVLK 251
Query: 192 ALVDTNDLEIFNHLTCC-YDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQH 250
AL +D +IF + YD + +++RV+++L + L TR QCL
Sbjct: 252 ALSSASDRDIFEGIIQKDYDNTF-----------LTDRVELLLRGFKPFKLYTREQCLHF 300
Query: 251 IGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVS 310
+G F+ V+ + + V + +I I VHL DK+ +L++MLQKL+SLV S
Sbjct: 301 LGSKFRVVLGCPEDWTDIQVGQYLIDRCILVHLQSPQDKYRMLLYMLQKLYSLVSGESCP 360
Query: 311 DNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVM 370
DNPDS Q E+L+PG L +KEKL++ L I+ ++ + + + KV+
Sbjct: 361 DNPDSPQLHEVLMPGFLYGQIIKEKLDECLIAATAQIRQDLRRQVSSANVSDDKYVNKVI 420
Query: 371 EKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASF 430
++ + IG + L TG L + +GLDLQQ G+T+ AE+LNF R+++ FR +HRGA F
Sbjct: 421 QRT-NFDIGQKLNYFLATGNLVSPSGLDLQQATGFTIMAEKLNFYRYLAHFRCIHRGAFF 479
Query: 431 AGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRT 490
A L+TT+VRKLLPE+WGFLCPVHTPDG PCGLLNH++ +C+V + + + +
Sbjct: 480 AELKTTAVRKLLPEAWGFLCPVHTPDGAPCGLLNHLSRSCKVTT--------ENLEESAS 531
Query: 491 SILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAAS 550
+I +L +GMI V +++ LDGR++G + +++ + LR K
Sbjct: 532 NIPSLLSSLGMIQPFVNTVDR--RNSVAIQLDGRIIGWASTEDVKHMAEALRIWKTEKLH 589
Query: 551 VIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFME 610
+P +LE+G VP S GG YPGLYLFTS + +RPV+ ++ + ++ +G FEQV+M+
Sbjct: 590 DVPLNLEIGLVPSSKGGQYPGLYLFTSRARMMRPVKYLA-----NGKLDHLGSFEQVYMD 644
Query: 611 IRC-PDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGF 669
+ C P + G +TH E PT +LSVVAN+TP+SD NQSPRNMYQCQMAKQTMG
Sbjct: 645 VACVPKEIEKG-----ISTHVEYTPTNVLSVVANMTPFSDFNQSPRNMYQCQMAKQTMGT 699
Query: 670 SVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMI 729
A+ R D KLY +Q QTPIVR + YG+D +P G NAIVAVL+YTGYDMEDAMI
Sbjct: 700 PSTAIMRRTDNKLYRIQNGQTPIVRPKLHAHYGMDNFPQGANAIVAVLSYTGYDMEDAMI 759
Query: 730 LNKSSVDRGMCHGQIYQTETIDLSD--DGNKVDRGQKL-FRRNKDAK-SLHSVIDSDGLP 785
+NKS+ +RG +G +Y+++ +DL + +K L F DAK +D DG+
Sbjct: 760 INKSAHERGFGYGTVYKSQIVDLREMRGASKSRSAPTLHFGLGVDAKQEWRETLDDDGII 819
Query: 786 YVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLP-QKANIRFRH 844
G + G+P C+ D+TT KG E ++D + + + + QK + + R
Sbjct: 820 PSGVKVTSGDPICAYIDETTGRTMVEKYKGDEDAYIDEIRLLGSDGGDTELQKIHFKIRI 879
Query: 845 TRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLES 904
R+P++GDKFSSRHGQKGV SQ W ID+PFS +G++PD+IINPHAFPSRMTI M +ES
Sbjct: 880 PRSPVVGDKFSSRHGQKGVMSQRWKKIDLPFSE-SGLQPDVIINPHAFPSRMTIGMFVES 938
Query: 905 VAAK 908
+A K
Sbjct: 939 IAGK 942
>gi|147899772|ref|NP_001080005.1| polymerase (RNA) I polypeptide B, 128kDa [Xenopus laevis]
gi|37589362|gb|AAH59304.1| MGC68946 protein [Xenopus laevis]
Length = 1134
Score = 668 bits (1723), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/948 (39%), Positives = 551/948 (58%), Gaps = 96/948 (10%)
Query: 11 PLRELVRHHIESFDYMLDEGLS------------------------EMFDH--------- 37
PL+E+ R HI+SF+ + EGLS + H
Sbjct: 34 PLQEITRAHIDSFNQAMTEGLSLAVQAMKPLEFTYRNDKVALQIVDAVLSHPLVPKGSIC 93
Query: 38 ---------CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGA 88
CR + +Y GKL ADV + ++++ GQFP+M+K++ C+L
Sbjct: 94 KEQKIYPAECRGRRSTYRGKLTADVSWSLNGMQKGIIKQ--TLGQFPIMVKSKFCNLYDL 151
Query: 89 DSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVV 148
+ ++L+ EE EMGGYFI+NG+E+V R +I+P++N+P++M+R +++R GYT +
Sbjct: 152 NPKQLLEHHEEEQEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWKNRGPGYTQYGIS 211
Query: 149 IRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCC 208
IRCV+ + ++V + L+YL NGSV + F Q + + +P+G LKALV+ +D +IF L
Sbjct: 212 IRCVQDEHTAVNMNLHYLENGSVMVNFIYQKELFFIPLGFALKALVEFSDYQIFTELI-- 269
Query: 209 YDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYY 268
KE + +++ +++++ E + L+++GE F+ + +
Sbjct: 270 ----KGKEDNSFYRDCMTQMLRVVVEE----GCHNQKNVLKYLGERFRVKFYLPEWYTDE 321
Query: 269 AVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLI 328
AE +I I +HL N +KF +L M QKLF+ + +NPDSL QE+L PG L+
Sbjct: 322 QAAEFLISHCICIHLKTNVEKFYMLCMMTQKLFTFAKDGCMEENPDSLMYQEVLTPGQLL 381
Query: 329 TIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKT 388
++LKEK+E WL G KL ++ K + K++ + + E +L T
Sbjct: 382 LMFLKEKMESWLL-GVKL---NLDKRAHKLVDLTTETMGKILTS--TSDLTKLCEYLLAT 435
Query: 389 GRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGF 448
G L ++TGL + Q +G V A++LNF+R++S FR VHRGA+FA +RTTSVR+LLPESWGF
Sbjct: 436 GNLRSKTGLGMLQSSGLVVVADKLNFIRYLSHFRCVHRGAAFAKMRTTSVRRLLPESWGF 495
Query: 449 LCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKL 508
LCPVHTPDGEPCGL+NHMT+ C + + + TS+ +L +GM P
Sbjct: 496 LCPVHTPDGEPCGLMNHMTAACEIVTQ----------TSYNTSLPLLLCSLGMTPVDGAA 545
Query: 509 VKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGA 568
KS V+LDG +VG + ++ +V LR KV +P E+ +P++ +
Sbjct: 546 GKSFADC-YPVMLDGAMVGWVENNVAPGLVNALRIYKVKHDKNVPPWTEIVLIPMTGKAS 604
Query: 569 -YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPA 627
YPGL++FT+P + VRP+RN++L EE L+G EQVF+ + +G P
Sbjct: 605 LYPGLFVFTTPCRLVRPIRNLALGKEE-----LLGTLEQVFLNVAIYEG------EIVPG 653
Query: 628 --THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHL 685
TH+E+ P MLSVVAN P+SDHNQSPRNMYQCQM KQTMGF + + R+D KLY L
Sbjct: 654 ETTHQELFPHSMLSVVANFIPFSDHNQSPRNMYQCQMGKQTMGFPLMTYQDRSDNKLYRL 713
Query: 686 QTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIY 745
QTPQ+P+VR + Y Y +D YP GTNAIVAV++YTGYDMEDAM+LNKSS +RG HG +Y
Sbjct: 714 QTPQSPLVRPSMYDYYEMDNYPVGTNAIVAVISYTGYDMEDAMVLNKSSWERGFAHGSVY 773
Query: 746 QTETIDLSDDGNKVDRGQK--LFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDK 803
+T+ +DLS K+ G+ +F D + + +D+DGLP VG ++ G+PY +
Sbjct: 774 KTDHVDLS---KKLKDGEDNIVFGIKPDDERVKGRLDNDGLPPVGAVLQFGDPYYGYLNF 830
Query: 804 TTNSWRTNSRKGSESVFVDYVAV---DMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQ 860
T K E+ VD + + D+ K + I R RNP IGDKF+SRHGQ
Sbjct: 831 NTGESFVAYYKSKENCVVDNIKICSNDIGFGKF--KSVCITMRIPRNPTIGDKFASRHGQ 888
Query: 861 KGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
KG+ S+LWP DMPF+ +GM PD++ NPH FPSRMTI ML+ES+A K
Sbjct: 889 KGILSRLWPSEDMPFTE-SGMVPDILFNPHGFPSRMTIGMLIESMAGK 935
>gi|55728623|emb|CAH91052.1| hypothetical protein [Pongo abelii]
Length = 1135
Score = 668 bits (1723), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/941 (40%), Positives = 530/941 (56%), Gaps = 83/941 (8%)
Query: 12 LRELVRHHIESFDYMLDEGLS--------------------EMFD--------------- 36
L+EL R H+ESF+Y + EGL + D
Sbjct: 35 LQELTRAHVESFNYAVHEGLGLAVQAIPPFEFAFKDERISFTILDAVISPPTVPKGTICK 94
Query: 37 -------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGAD 89
CR + +Y GKL AD+ + ++++ G P+M+K++ C+L
Sbjct: 95 EVSVYPAECRGRRCTYRGKLTADISWAVNGISKGIIKQFL--GYVPIMVKSKLCNLYNLP 152
Query: 90 SQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVI 149
Q L+ EEA EMGGYFI+NG+E+V R +I+P++N+P++MVR ++ R GYT V +
Sbjct: 153 PQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMVRPKWKTRGPGYTHFGVSM 212
Query: 150 RCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY 209
CVR++ S+V + L+YL NG+V L F + + + LP+G LKALV +D +IF L
Sbjct: 213 HCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELI--- 269
Query: 210 DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYA 269
KE + VS+ ++I++ E +T+ Q L ++GE F+ ++
Sbjct: 270 ---KGKEDDSFLRNSVSQMLRIVMEE----GCSTQKQVLNYLGECFRVKLNVPDWYPNEQ 322
Query: 270 VAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
AE + I +HL N +KF +L M +KLF+L + DNPDSL NQE+L PG L
Sbjct: 323 AAEFLFNQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMEDNPDSLVNQEVLTPGQLFL 382
Query: 330 IYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTG 389
++LKEKLE L K + + + NL I + + E + TG
Sbjct: 383 MFLKEKLEGLLVSIKIAFDKKAQKTNVSMNTDNLMRIFTM-----GIDLTKPFEYLFATG 437
Query: 390 RLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFL 449
L ++TGL L Q +G V A++LNF+R++S FR VHRGA FA +RTT+VR+LLPESWGFL
Sbjct: 438 NLRSKTGLGLLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVRRLLPESWGFL 497
Query: 450 CPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLV 509
CPVHTPDGEPCGL+NH+T+ C V + + +I L +GV I P
Sbjct: 498 CPVHTPDGEPCGLMNHLTAVCEVVTQFVYTASI--------PALLCNLGVTPIDGAPHRS 549
Query: 510 KSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGA- 568
S VLLDG +VG + + LR KV IP EV +P++ +
Sbjct: 550 YS---ECYPVLLDGVMVGWVDKELAPGIADSLRHFKVLREKRIPPWTEVVLIPMTGKPSL 606
Query: 569 YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPAT 628
YPGL+LFT+P + VRPV+N+ L EE LIG EQ+FM + + A T
Sbjct: 607 YPGLFLFTTPCRLVRPVQNLELGKEE-----LIGTMEQIFMNVAIFED----EVFAGVTT 657
Query: 629 HEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTP 688
H+E+ P +LSV+AN P+SDHNQSPRNMYQCQM KQTMGF + + R+D KLY LQTP
Sbjct: 658 HQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTP 717
Query: 689 QTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTE 748
Q+P+VR + Y Y +D YP GTNAIVAV++YTGYDMEDAMI+NK+S +RG HG Y++E
Sbjct: 718 QSPLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSAYKSE 777
Query: 749 TIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSW 808
IDLS+ + D + D + L +D DGLP++G + G+PY S + T
Sbjct: 778 FIDLSEKIKQGDSSLVFGMKPGDPRILQK-LDDDGLPFIGAKLQYGDPYYSYLNLNTGES 836
Query: 809 RTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHTRNPIIGDKFSSRHGQKGVCSQL 867
K E+ VD + ++ + K I R RNP IGDKF+SRHGQKG+ S+L
Sbjct: 837 FVMYYKSKENCVVDNIKACSNDTGSGKFKCVCITMRVPRNPTIGDKFASRHGQKGILSRL 896
Query: 868 WPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
WP DMPF+ +GM PD++ NPH FPSRMTI ML+ES+A K
Sbjct: 897 WPAEDMPFTE-SGMVPDILFNPHGFPSRMTIGMLIESMAGK 936
>gi|124504400|gb|AAI28811.1| Zgc:66298 [Danio rerio]
Length = 1132
Score = 667 bits (1722), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/953 (39%), Positives = 549/953 (57%), Gaps = 107/953 (11%)
Query: 11 PLRELVRHHIESFDYMLDEGLSEMFD---------------------------------- 36
P++ELV+ HIESFD + +GL + +
Sbjct: 33 PVQELVKAHIESFDQAVTDGLCRVVEAIPPMEFLYKGDRISLSFVEAIIHTPSVSKGGIS 92
Query: 37 --------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGA 88
CR + +Y KL+ADV + ++++ + GQ P+M+K++ C+L G
Sbjct: 93 RDLRVFPAECRGRRCTYRAKLVADVSWSVNGVPKGIIKQ--SLGQMPIMVKSKLCNLHGL 150
Query: 89 DSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVV 148
++L+ EEA EMGGYFI+NG+E+V R +I+P++NYP+++ R F+ R +GYT A+
Sbjct: 151 SPKELLEHHEEAEEMGGYFIVNGIEKVIRLLIMPRRNYPIAVSRPKFKSRGQGYTQYAIS 210
Query: 149 IRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCC 208
+RCV+++ +++ + L+YL NG+V + F + + + LP+G LKALVD +D +I+ L
Sbjct: 211 MRCVKEEHTAINMNLHYLDNGTVMVNFIYRKELFFLPLGFALKALVDYSDYQIYQELI-- 268
Query: 209 YDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYY 268
+E + VSE ++I++ D TT+++ L ++GE F+ ++ + ++
Sbjct: 269 ----KGREDNSFYKSCVSEMLRIVM----DQGCTTKIKVLNYLGERFRVKLNLPEWFTHE 320
Query: 269 AVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLI 328
A ++ + + +HL + +KF +L M +KLFS + +NPDS E+L PG L
Sbjct: 321 QCAHFLLDECLCIHLKTDVEKFYMLCLMTRKLFSFAKQECMEENPDSPMFHEVLTPGQLY 380
Query: 329 TIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKT 388
++LKEK+E WL ++ +E ++ ++ K+ N + + E +L T
Sbjct: 381 LMFLKEKMEGWLVS----VKLALEKKPQRVGGLTPDSMTKLF--NMGTDLTKAFEYLLAT 434
Query: 389 GRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGF 448
G L ++TGL + Q +G V A++LNF+R++S FR VHRGA+FA +RTT+VRKLLPESWGF
Sbjct: 435 GNLMSKTGLGMLQNSGLCVVADKLNFIRYLSHFRCVHRGAAFAKMRTTTVRKLLPESWGF 494
Query: 449 LCPVHTPDGEPCGLLNHMTSTCR-VASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPK 507
LCPVHTPDGEPCGL+NHMT+ C VA Y TS L G++ SL
Sbjct: 495 LCPVHTPDGEPCGLMNHMTAHCEIVAPVYP------------TSTLP-----GLLCSLGV 537
Query: 508 LVKSGPPA-----VLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVP 562
G P V+LDG ++G + V+ LRR KV +P E+ VP
Sbjct: 538 NAADGNPGQAYSDCYPVILDGAMIGWVEKEVAPSVIESLRRFKVLGEKKVPPWTEIVLVP 597
Query: 563 LSLGGA-YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEI-----RCPDG 616
+ + YPGLYLFT+P + VR VRN+SL +E LIG FEQV++ + DG
Sbjct: 598 QTGKASLYPGLYLFTTPCRMVRTVRNLSLGKQE-----LIGIFEQVYLNVGIFEKEIEDG 652
Query: 617 GDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKF 676
TH+E+ P MLSVVA P+SDHNQSPRNMYQCQM+KQTMGF + + ++
Sbjct: 653 ---------VTTHQELFPHSMLSVVAEFIPFSDHNQSPRNMYQCQMSKQTMGFPLHSYQY 703
Query: 677 RADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVD 736
R+D KLY LQTPQ+P+VR Y Y +D YP GTNAIVAV++YTGYDMEDAMI+NKSS +
Sbjct: 704 RSDNKLYRLQTPQSPLVRPAMYDHYDVDNYPIGTNAIVAVISYTGYDMEDAMIVNKSSWE 763
Query: 737 RGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEP 796
RG HG +Y+TE IDLS+ D +F + +D+DGLP++G ++ G+P
Sbjct: 764 RGFAHGSVYKTEIIDLSEKVKGDD--SIVFGVKPGDPKVMGKLDADGLPFIGSVLKYGDP 821
Query: 797 YCSIYDKTTNSWRTNSRKGSESVFVDYVAV-DMKNSKNLPQKANIRFRHTRNPIIGDKFS 855
+ T K ES VD + V + ++ + R RNP IGDKF+
Sbjct: 822 FYGYISLNTGQSHVYFYKYQESCVVDNIKVCSNETGTGRFKRICVTSRVPRNPTIGDKFA 881
Query: 856 SRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
SRHGQKG+ S+LWP DMPF+ +GM PD++ NPH FPSRMTI ML+ES+A K
Sbjct: 882 SRHGQKGILSRLWPAEDMPFTE-SGMSPDILFNPHGFPSRMTIGMLIESMAGK 933
>gi|76253769|ref|NP_956812.2| DNA-directed RNA polymerase I subunit RPA2 [Danio rerio]
gi|66911319|gb|AAH97040.1| Zgc:66298 [Danio rerio]
gi|182890886|gb|AAI65683.1| Zgc:66298 protein [Danio rerio]
Length = 1132
Score = 667 bits (1722), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/953 (39%), Positives = 549/953 (57%), Gaps = 107/953 (11%)
Query: 11 PLRELVRHHIESFDYMLDEGLSEMFD---------------------------------- 36
P++ELV+ HIESFD + +GL + +
Sbjct: 33 PVQELVKAHIESFDQAVTDGLCRVVEAIPPMEFLYKGDRISLSFVEAIIHTPSVSKGGIS 92
Query: 37 --------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGA 88
CR + +Y KL+ADV + ++++ + GQ P+M+K++ C+L G
Sbjct: 93 RDLRVFPAECRGRRCTYRAKLVADVSWSVNGVPKGIIKQ--SLGQMPIMVKSKLCNLHGL 150
Query: 89 DSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVV 148
++L+ EEA EMGGYFI+NG+E+V R +I+P++NYP+++ R F+ R +GYT A+
Sbjct: 151 SPKELLEHHEEAEEMGGYFIVNGIEKVIRLLIMPRRNYPIAVSRPKFKSRGQGYTQYAIS 210
Query: 149 IRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCC 208
+RCV+++ +++ + L+YL NG+V + F + + + LP+G LKALVD +D +I+ L
Sbjct: 211 MRCVKEEHTAINMNLHYLDNGTVMVNFIYRKELFFLPLGFALKALVDYSDYQIYQELI-- 268
Query: 209 YDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYY 268
+E + VSE ++I++ D TT+++ L ++GE F+ ++ + ++
Sbjct: 269 ----KGREDNSFYKSCVSEMLRIVM----DQGCTTKIKVLNYLGERFRVKLNLPEWFTHE 320
Query: 269 AVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLI 328
A ++ + + +HL + +KF +L M +KLFS + +NPDS E+L PG L
Sbjct: 321 QCAHFLLDECLCIHLKTDVEKFYMLCLMTRKLFSFAKQECMEENPDSPMFHEVLTPGQLY 380
Query: 329 TIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKT 388
++LKEK+E WL ++ +E ++ ++ K+ N + + E +L T
Sbjct: 381 LMFLKEKMEGWLVS----VKLALEKKPQRVGGLTPDSMTKLF--NMGTDLTKAFEYLLAT 434
Query: 389 GRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGF 448
G L ++TGL + Q +G V A++LNF+R++S FR VHRGA+FA +RTT+VRKLLPESWGF
Sbjct: 435 GNLMSKTGLGMLQNSGLCVVADKLNFIRYLSHFRCVHRGAAFAKMRTTTVRKLLPESWGF 494
Query: 449 LCPVHTPDGEPCGLLNHMTSTCR-VASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPK 507
LCPVHTPDGEPCGL+NHMT+ C VA Y TS L G++ SL
Sbjct: 495 LCPVHTPDGEPCGLMNHMTAHCEIVAPVYP------------TSTLP-----GLLCSLGV 537
Query: 508 LVKSGPPA-----VLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVP 562
G P V+LDG ++G + V+ LRR KV +P E+ VP
Sbjct: 538 NAADGNPGQAYSDCYPVILDGAMIGWVEKEVAPSVIESLRRFKVLGEKKVPPWTEIVLVP 597
Query: 563 LSLGGA-YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEI-----RCPDG 616
+ + YPGLYLFT+P + VR VRN+SL +E LIG FEQV++ + DG
Sbjct: 598 QTGKASLYPGLYLFTTPCRMVRTVRNLSLGKQE-----LIGIFEQVYLNVGIFEKEIEDG 652
Query: 617 GDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKF 676
TH+E+ P MLSVVA P+SDHNQSPRNMYQCQM+KQTMGF + + ++
Sbjct: 653 ---------VTTHQELFPHSMLSVVAEFIPFSDHNQSPRNMYQCQMSKQTMGFPLHSYQY 703
Query: 677 RADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVD 736
R+D KLY LQTPQ+P+VR Y Y +D YP GTNAIVAV++YTGYDMEDAMI+NKSS +
Sbjct: 704 RSDNKLYRLQTPQSPLVRPAMYDHYDVDNYPIGTNAIVAVISYTGYDMEDAMIVNKSSWE 763
Query: 737 RGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEP 796
RG HG +Y+TE IDLS+ D +F + +D+DGLP++G ++ G+P
Sbjct: 764 RGFAHGSVYKTEIIDLSEKVKGDD--SIVFGVKPGDPKVMGKLDADGLPFIGSVLKYGDP 821
Query: 797 YCSIYDKTTNSWRTNSRKGSESVFVDYVAV-DMKNSKNLPQKANIRFRHTRNPIIGDKFS 855
+ T K ES VD + V + ++ + R RNP IGDKF+
Sbjct: 822 FYGYISLNTGQSHVYFYKYQESCVVDNIKVCSNETGTGRFKRICVTSRVPRNPTIGDKFA 881
Query: 856 SRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
SRHGQKG+ S+LWP DMPF+ +GM PD++ NPH FPSRMTI ML+ES+A K
Sbjct: 882 SRHGQKGILSRLWPAEDMPFTE-SGMSPDILFNPHGFPSRMTIGMLIESMAGK 933
>gi|345328017|ref|XP_001515678.2| PREDICTED: DNA-directed RNA polymerase I subunit RPA2
[Ornithorhynchus anatinus]
Length = 1262
Score = 666 bits (1719), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 377/966 (39%), Positives = 539/966 (55%), Gaps = 117/966 (12%)
Query: 2 ARKKSADFEPLRELVRHHIESFDYMLDEGLSEMFD------------------------- 36
AR+ +A L+EL R H+ SFD+ + EGLS+
Sbjct: 156 ARQAAA----LQELSRAHVRSFDHAVREGLSQAVQAILPFEFAFRDERITLAIVDAVISP 211
Query: 37 -----------------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLK 79
CR + +Y GKL AD+ + ++++ + G P+M+K
Sbjct: 212 PMVPKGSICKELKVFPAECRGRRSTYRGKLTADISWAVNGIPKGIIKQ--SLGYVPIMVK 269
Query: 80 TRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRR 139
++ C+L + L+ EE EMGGYFI+NG+E++ R +I+P++N+P++++R ++ R
Sbjct: 270 SKLCNLYDLPPKALIEHHEEPEEMGGYFIVNGIEKIIRMLIMPRRNFPIALIRPKWKSRG 329
Query: 140 EGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDL 199
GYT V + CVR + +++ + L+YL NG+V + F Q + + LP+G LKALV +D
Sbjct: 330 PGYTHFGVSMHCVRDEHTAINMNLHYLENGTVMVNFIYQKELFFLPLGFALKALVGFSDH 389
Query: 200 EIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVI 259
+IF L +E + VS+ +++++ E TT+ Q L ++GE F+ +
Sbjct: 390 QIFQELI------KGREDNSFYKNCVSQMLRMVMEE----GCTTQKQVLNYLGERFRIKL 439
Query: 260 DGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQ 319
+ + AE ++ I +HL N +KF +L M +KLF+ + ++ DSL NQ
Sbjct: 440 NLPEWYRNEQAAEFLLNQCICIHLKSNTEKFYMLCLMTRKLFAFAKGECMEESSDSLMNQ 499
Query: 320 EILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDF-FNLANIKKVMEKNPSKQI 378
E+L PG L ++LKEKLE WL ++ + +K + N N+ KV +
Sbjct: 500 EVLTPGQLFLMFLKEKLEAWLVS----VKIAFDKRAQKTNISLNSENLMKVFSM--GLDL 553
Query: 379 GTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSV 438
E +L TG L ++TGL + Q G V A++LNF+R++S FR VHRGA+FA +RTTSV
Sbjct: 554 TRPFEYLLATGSLRSKTGLGMLQDVGLCVVADKLNFIRYLSHFRCVHRGAAFAKMRTTSV 613
Query: 439 RKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIG 498
R+LLPESWGFLCPVHTPDGEPCGL+NHMT+ C + +
Sbjct: 614 RRLLPESWGFLCPVHTPDGEPCGLMNHMTAVCEIVTQ----------------------- 650
Query: 499 VGMIPSLPKLVKS-------GPPA-----VLSVLLDGRVVGVIPSSEIEKVVAHLRRLKV 546
V P+LP L+ S G P+ V+LDG V+G + + LR KV
Sbjct: 651 VAYTPTLPALLCSLGITPVDGAPSQPYRDCYPVVLDGVVMGWVEKDLAPGIADSLRNFKV 710
Query: 547 SAASVIPDDLEVGYVPLSLGGA-YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFE 605
IP +EV +P++ + YPGL+LFT+P + +RPVRN+ L EE IG E
Sbjct: 711 LGEKKIPPWMEVVLIPMTGKPSLYPGLFLFTTPCRMIRPVRNLDLGKEE-----FIGTLE 765
Query: 606 QVFMEIRCPDGGDGGRRNAFPA--THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMA 663
Q FM I + P TH+E+ P MLSVVAN P+SDHNQSPRNMYQCQM
Sbjct: 766 QTFMNIAIFED------EIVPGITTHQELFPHSMLSVVANFIPFSDHNQSPRNMYQCQMG 819
Query: 664 KQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYD 723
KQTMGF + + R+D KLY L +PQ+P+VR Y Y +D YP GTNA+VAV++YTGYD
Sbjct: 820 KQTMGFPLNTYRERSDNKLYRLHSPQSPLVRPYMYDYYEMDNYPIGTNAVVAVISYTGYD 879
Query: 724 MEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDG 783
MEDAMI+NKSS +RG HG +Y+TE +DLSD + D + D++ H +D DG
Sbjct: 880 MEDAMIVNKSSWERGFAHGTVYKTERVDLSDKIKQGDDCLVFGVKPGDSRVAHK-LDDDG 938
Query: 784 LPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRF 842
LPY+G ++ G+P+ S + T K E VD + V ++ N K I
Sbjct: 939 LPYIGAVLQYGDPFYSYVNLNTGESFVTYYKSKEDCVVDNIKVCGNDTGNGKFKCICITM 998
Query: 843 RHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLL 902
R RNP IGDKF+SRHGQKG+ S+LWP DMPF+ +GM PD++ NPH FPSRMTI ML+
Sbjct: 999 RIPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTE-SGMMPDILFNPHGFPSRMTIGMLI 1057
Query: 903 ESVAAK 908
ES+A K
Sbjct: 1058 ESMAGK 1063
>gi|1621594|gb|AAC52850.1| second largest subunit of RNA polymerase I [Mus musculus]
Length = 1135
Score = 666 bits (1718), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 383/948 (40%), Positives = 540/948 (56%), Gaps = 97/948 (10%)
Query: 12 LRELVRHHIESFDYMLDEGLSEMFD----------------------------------- 36
L++L R H++SF+Y EGLS
Sbjct: 35 LQDLTRAHVDSFNYAALEGLSHAVQAIPPFEFAFKDERISLTIVDAVISPPSVPKGTICK 94
Query: 37 -------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGAD 89
CR K +Y G+L AD+ + ++++ G P+M+K++ C+L
Sbjct: 95 DLNVYPAECRGRKSTYRGRLTADISWAVNGVPKGIIKQFL--GYVPIMVKSKLCNLYNLP 152
Query: 90 SQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVI 149
+ L+ EEA EMGGYFI+NG+E+V R +I P++N+P++MVR ++ R GYT V +
Sbjct: 153 PRVLIEHHEEAEEMGGYFIINGIEKVIRMLIEPRRNFPVAMVRPKWKSRGLGYTQFGVSM 212
Query: 150 RCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY 209
RCVR++ S+V + L+Y+ NG+V L F + + + LP+G LKALV +D +IF L
Sbjct: 213 RCVREEHSAVNMNLHYVENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELI--- 269
Query: 210 DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYA 269
KE+ + VS+ ++I++ E ++ Q L ++GE F+ +
Sbjct: 270 ---KGKEEDSFFRNSVSQMLRIVIEE----GCHSQKQVLNYLGECFRVKLSLPDWYPNVE 322
Query: 270 VAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
AE ++ I +HL N DKF L M +KLF+L + DNPDSL NQE+L PG L
Sbjct: 323 AAEFLLNQGICIHLQSNTDKFYLRCLMTRKLFALARGECMDDNPDSLVNQEVLSPGQLFL 382
Query: 330 IYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTG 389
++LKEK+E+WL K ++ + + NL I + ++ E +L TG
Sbjct: 383 MFLKEKMENWLVSIKIVLDKRAQKANVSINNENLMKIFSM-----GTELTRPFEYLLATG 437
Query: 390 RLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFL 449
L ++TGL + +G V A++LNFLR++S FR VHRGA+FA +RTT+VR+LLPESWGFL
Sbjct: 438 NLRSKTGLGFLEDSGLCVVADKLNFLRYLSHFRCVHRGAAFAKMRTTTVRRLLPESWGFL 497
Query: 450 CPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLV 509
CPVHTPDG PCGLLNH+T+ C V + + SI +L G+G+ +
Sbjct: 498 CPVHTPDGAPCGLLNHLTAVCEVVTKFGDTA----------SIPALLCGLGVTGA----- 542
Query: 510 KSGPPAVLS----VLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSL 565
+ P S VLLDG +VG + +V LRR KV IP +EV +P++
Sbjct: 543 DTAPCRPYSDCYPVLLDGVMVGWVDKDLAPEVADTLRRFKVLREKRIPPWMEVALIPMTG 602
Query: 566 GGA-YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRN 623
+ YPGL+LFT+P + VRPV+N+ L EE LIG EQ+FM + D GG
Sbjct: 603 KPSLYPGLFLFTTPCRLVRPVQNLELGREE-----LIGTMEQLFMNVAIFEDEVFGGI-- 655
Query: 624 AFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLY 683
+TH+E+ P +LSV+AN P+SDHNQSPRNMYQCQM KQTMGF + + R+D KLY
Sbjct: 656 ---STHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQNRSDNKLY 712
Query: 684 HLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQ 743
LQTPQ+P+VR Y Y +D YP GTNAIVAV++YTGYDMEDAMI+NK+S +RG HG
Sbjct: 713 RLQTPQSPLVRPCMYDFYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGS 772
Query: 744 IYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDK 803
+Y++E IDLS+ + + + D + + +D DGLP +G + G+PY S +
Sbjct: 773 VYKSEFIDLSEKFKQGEDNLVFGVKPGDPRVMQK-LDDDGLPSIGAKLEYGDPYYSYLNL 831
Query: 804 TTNSWRTNSRKGSESVFVDYVAV---DMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQ 860
T K E+ VD + V DM + K + I R RNP IGDKF+SRHGQ
Sbjct: 832 NTGEGFVVYYKSKENCVVDNIKVCSNDMGSGKF--KCICITVRIPRNPTIGDKFASRHGQ 889
Query: 861 KGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
KG+ S+LWP DMPF+ +GM PD++ NPH FPSRMTI ML+ES+A K
Sbjct: 890 KGILSRLWPAEDMPFTE-SGMMPDILFNPHGFPSRMTIGMLIESMAGK 936
>gi|351699694|gb|EHB02613.1| DNA-directed RNA polymerase I subunit RPA2 [Heterocephalus glaber]
Length = 1129
Score = 666 bits (1718), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 384/940 (40%), Positives = 541/940 (57%), Gaps = 87/940 (9%)
Query: 12 LRELVRHHIESFDYMLDEGLSEMFDHC-------RQAKISYT-------------GKLMA 51
L+EL R H++SF+Y + EGLS+ + +IS+T G +
Sbjct: 35 LQELTRAHVDSFNYAVCEGLSQAVQAIPSFEFAFKDERISFTIVDAVISPPTVPKGTICK 94
Query: 52 DV-----EFQYLDAGSPV----------VRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
++ E L AG+ + V ++F G P+M+K++ C+L + L+
Sbjct: 95 ELSVYPAEEGVLSAGADISWSVNGISRGVIKQF-LGHVPIMVKSKLCNLHNLPPKALIEH 153
Query: 97 KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQ 156
EEA EMGGYFI+NG+E+V R +I+P++N+P++++R ++ R GYT V + CVR D
Sbjct: 154 HEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIALIRPKWKSRGPGYTQFGVSMHCVRGDH 213
Query: 157 SSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKE 216
S+V + L+YL NG+V L F + + + LP+G LKALV +D +IF L KE
Sbjct: 214 SAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELV------KGKE 267
Query: 217 KGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIR 276
+ VS+ ++I++ E +T+ Q L ++GE F+ ++ S E +
Sbjct: 268 DDSFFRNSVSQMLRIVMEE----GCSTQKQVLNYLGECFRVKLNLPDWYSNEQATEFLFD 323
Query: 277 DYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKL 336
I +HL N +K +LL FM +KLF+L + +NPDSL NQEIL PG L ++LKEK+
Sbjct: 324 QCICIHLKSNIEKLHLLCFMTRKLFALAKGECMEENPDSLVNQEILTPGQLFLMFLKEKM 383
Query: 337 EDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTG 396
E WL K + + + NL I + + E +L TG L ++TG
Sbjct: 384 EAWLMSIKIALDKRAQKTNVSINTENLMKIFSM-----GGDLTRPFEYLLATGNLRSKTG 438
Query: 397 LDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPD 456
L Q +G V A++LNF+R++S FR VHRG FA +RTT+VR+LLPESWGFLCPV+TPD
Sbjct: 439 LGFMQDSGLCVVADKLNFIRYLSHFRCVHRGGDFAKMRTTTVRRLLPESWGFLCPVNTPD 498
Query: 457 GEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAV 516
G PCGL+NH+T+ C V + + TSI +L +G++P V P
Sbjct: 499 GAPCGLMNHLTAICEVVTQF----------AYTTSIPALLCTLGVMP-----VDGTPHCP 543
Query: 517 LS----VLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGA-YPG 571
S VLLDG +VG + + LRR KV IP +EV VP++ + YPG
Sbjct: 544 YSECYPVLLDGVMVGWVDKELAPGIADSLRRFKVLREKRIPPWMEVALVPITGKSSLYPG 603
Query: 572 LYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEE 631
L+LFT+P + VRPV+N+ L EE LIG EQ+FM I + N TH+E
Sbjct: 604 LFLFTTPCRLVRPVQNLELGKEE-----LIGTMEQLFMNIAIFEDEVCAGVN----THQE 654
Query: 632 IHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTP 691
+ P +LSV+AN P+SDHNQSPRNMYQCQM+KQTMGF + + R+D KLY LQTPQ+P
Sbjct: 655 LFPHSLLSVIANFIPFSDHNQSPRNMYQCQMSKQTMGFPLLTYQDRSDNKLYRLQTPQSP 714
Query: 692 IVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETID 751
+VR Y Y +D YP GTNAIVAV++YTGYDMEDAMI+NKSS +RG HG +Y+TE I+
Sbjct: 715 LVRPYMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKSSWERGFAHGSVYKTEFIN 774
Query: 752 LSDDGNKVDRGQK--LFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWR 809
LS+ K +G +F + +D DGLP++G + G+P+ + +T
Sbjct: 775 LSE---KFKQGADSLVFGVKPGDPRIMQKLDDDGLPFIGAKLQYGDPHYGYLNLSTGESY 831
Query: 810 TNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHTRNPIIGDKFSSRHGQKGVCSQLW 868
K E+ VD + V +S + K I R RNP IGDKF+SRHGQKG+ S+LW
Sbjct: 832 VVYYKSKENCIVDNIKVCSNDSGSGKFKCICITMRVPRNPTIGDKFASRHGQKGILSRLW 891
Query: 869 PDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
P DMPF+ +GM PD++ NPH FPSRMTI ML+ES+A K
Sbjct: 892 PAEDMPFTE-SGMVPDILFNPHGFPSRMTIGMLIESMAGK 930
>gi|346319101|gb|EGX88703.1| DNA-directed RNA polymerase I 135 kDa polypeptide [Cordyceps
militaris CM01]
Length = 1214
Score = 664 bits (1713), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/900 (41%), Positives = 541/900 (60%), Gaps = 80/900 (8%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGS-PVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
CR+ ++Y G+L A E+ S VR+ GQ P+MLK
Sbjct: 118 CRERHVTYRGRLSATFEYNINGGDSHEFVRD---LGQIPIMLKR---------------- 158
Query: 97 KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQ 156
KEEA E+GGYF++NG+E++ R + L K+N+PM++ R SF++R GY+ +++R VR D+
Sbjct: 159 KEEAEELGGYFVVNGIEKIIRMLQLNKRNFPMAINRPSFQNRGPGYSPFGIILRSVRPDE 218
Query: 157 SSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKE 216
+S T L+YL +G+V F + EYL+PV +++KALV+TND EIF + K
Sbjct: 219 TSQTNVLHYLTDGNVTFRFSWRKNEYLVPVVMIMKALVETNDREIFEGVIGPMGSK---- 274
Query: 217 KGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIR 276
A + +++RV+++L + L ++ Q ++G+ F+ V+ ++ S Y V +R
Sbjct: 275 --ATENTFLTDRVELLLRTYKSYGLYSKSQTRAYLGQKFRVVLGVPETMSDYDVGTEFLR 332
Query: 277 DYIFVHLNDNN-------DKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
VHL + N +KF +L+FM++KL++LV DNPD++QNQEILL G L
Sbjct: 333 RITLVHLGNVNVKDKQDIEKFKMLLFMIRKLYALVAGECAVDNPDAIQNQEILLGGFLYG 392
Query: 330 IYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKK---VMEKNPSKQIGTSIETML 386
LKEK +++L +L E F + K+ + + ++ +G S+E L
Sbjct: 393 QILKEKFDEFLGVNVRLSLREYFRRHPSVAFTSEEFRKEFPAAIFRKANENLGNSLEYFL 452
Query: 387 KTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESW 446
TG L + +GLDLQQ AG+TV AE+LNFLRFI+ FR VHRGA FA L+TT+VRKLLPESW
Sbjct: 453 STGNLVSPSGLDLQQVAGFTVVAEKLNFLRFIAHFRMVHRGAFFAQLKTTAVRKLLPESW 512
Query: 447 GFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLP 506
GF+CPVHTPDG PCGLLNH+ C++ + + D SK+ L V +G ++
Sbjct: 513 GFMCPVHTPDGAPCGLLNHLAHKCKIMTDH------IDVSKV--PALVVTLG-----AVD 559
Query: 507 KLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLG 566
S +V+ ++LDG+++G E ++ LR KV +P LE+GYVP S G
Sbjct: 560 TSTASTAESVV-IMLDGQILGWCKPKESLRIADCLRYWKVEGNHGVPLHLEIGYVPPSTG 618
Query: 567 GAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRNAF 625
G+YPG+Y+ ++P + +RPV+ + L E+ ++GP+EQ +M I P+ + G
Sbjct: 619 GSYPGIYMTSTPSRMIRPVKYLPLQKED-----MVGPYEQPYMSIAVVPEEIESGL---- 669
Query: 626 PATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHL 685
+TH E PT +LS++AN+TP+SD NQSPRNMYQCQM KQTMG AL R D K Y L
Sbjct: 670 -STHVEFDPTNILSILANMTPFSDFNQSPRNMYQCQMGKQTMGTPGTALVHRTDNKSYRL 728
Query: 686 QTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIY 745
QT QTPIVR + YG D +P GTN +VAV++YTGYDM+DAMI+NKS+ +RG HG +Y
Sbjct: 729 QTGQTPIVRAPLHNAYGFDNFPNGTNVVVAVISYTGYDMDDAMIINKSAHERGFGHGTVY 788
Query: 746 QTETIDLSDD-----GNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSI 800
+T+ I L DD V + + + S ++D DGLP+VG+++ G+ C+
Sbjct: 789 KTKKISLKDDSRTKASKSVIKAFGFAPHSFVSASYQGMLDDDGLPHVGRLVQDGDVICA- 847
Query: 801 YDKTTNSWRTN-----------SRKGSESVFVDYVAVDMKNSKNLP-QKANIRFRHTRNP 848
+ T +R + K E+ F++ V + + + P Q +I+FR R P
Sbjct: 848 WHTVTPDYRGDLVNLDGITHYEKYKDGETGFIEEVRLIGAETGSEPLQTISIKFRIPRAP 907
Query: 849 IIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
IIGDKFSSRHGQKGVCSQ WP IDMPFS +GM+PD+IINPHAFPSRMTI M +ES+A K
Sbjct: 908 IIGDKFSSRHGQKGVCSQKWPAIDMPFS-ESGMQPDVIINPHAFPSRMTIGMFVESLAGK 966
>gi|452002554|gb|EMD95012.1| hypothetical protein COCHEDRAFT_1191766 [Cochliobolus
heterostrophus C5]
Length = 1213
Score = 663 bits (1711), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/907 (41%), Positives = 536/907 (59%), Gaps = 78/907 (8%)
Query: 39 RQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKE 98
R+ +Y GK+ A +E++ + E + G P+MLK+ RCHL+G LV KE
Sbjct: 125 RERHATYRGKMRARLEWRVNNGDWQ--EEVVDLGSIPIMLKSNRCHLEGLPPAALVKAKE 182
Query: 99 EAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSS 158
E+ E+GGYFI+NG E++ R + + +NYPM++ R +F +R GYT + +R +R DQ+S
Sbjct: 183 ESDELGGYFIINGNEKIIRMLQVNHRNYPMAIKRGAFTNRGPGYTQFGIQLRSMRPDQTS 242
Query: 159 VTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKG 218
T L+YL +G+V F + EYL+P+ ++LKALV+TND EIF L + ++K
Sbjct: 243 QTNALHYLSDGNVNFRFSWRKAEYLVPICMILKALVETNDREIFEGLVGAAGSEGLEQK- 301
Query: 219 AVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDY 278
V++RV+++L + L ++ + ++GE F+ V+ + +R
Sbjct: 302 ----QFVTDRVELLLRTYKVYGLHSKAKTRAYLGEKFKVVMQLPADVTDEEAGTEFLRKI 357
Query: 279 IFVHLNDNN-------DKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIY 331
+ HL N DKF +L+FM +KL++LV+ DNPD++QNQEILL G L +
Sbjct: 358 VLPHLGCVNVTPAQDADKFRMLLFMTRKLYALVEGDCAVDNPDAVQNQEILLGGQLYGMI 417
Query: 332 LKEKLEDWLRKGKKLIQDEIENNGKKFDF-------FNLANIKKVMEKNPSKQIGTSIET 384
LKE+LE+WL + ++++ G++ ++ F+ K++ + IG ++E
Sbjct: 418 LKERLEEWLNSFQLVLREW----GRRTEYRPFTSQEFHKDWSSKILRRT-QLAIGQAMEY 472
Query: 385 MLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPE 444
L TG L + TGLDLQQ +G+ V AE+LNF RFIS FR VHRGA FA L+TT+VRKLLPE
Sbjct: 473 FLSTGNLVSPTGLDLQQTSGFVVVAEKLNFPRFISHFRMVHRGAFFATLKTTTVRKLLPE 532
Query: 445 SWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPS 504
SWGF+CPVHTPDG PCGLLNH + TC++A+ N+ D S + + + + S
Sbjct: 533 SWGFMCPVHTPDGSPCGLLNHFSHTCKIATT-----NL-DVSAVPKLVAELGVSSKSSAS 586
Query: 505 LPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLS 564
L A + V LDGRV+G + + + LR KV + +P ++E+GY+P S
Sbjct: 587 LD--------ASVVVQLDGRVLGFCSPKQAKIISDTLRYWKVEGSHGVPVEMEIGYIPNS 638
Query: 565 LGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDG----GDGG 620
G YPG+Y+F+ + RPV+ + L ++ +GPFEQ +M I D GD
Sbjct: 639 NNGQYPGVYMFSQCSRMYRPVKYLPL-----NKLDYVGPFEQPYMSISVTDAEIVSGD-- 691
Query: 621 RRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQ 680
+TH E PT + S++AN TP+SD NQSPRNMYQCQM KQ+MG A+++R D
Sbjct: 692 ------STHVEFEPTNIFSIIANQTPFSDFNQSPRNMYQCQMGKQSMGTPGTAMRYRTDN 745
Query: 681 KLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMC 740
K Y LQT QTPI R Y +YG+D +P G NA+VAV++YTGYDM+DAMILNKSS +RG
Sbjct: 746 KTYRLQTGQTPIARPPLYNEYGMDNFPNGMNAVVAVISYTGYDMDDAMILNKSSHERGFG 805
Query: 741 HGQIYQTETIDLSDDGNKVDRGQ----KLFRRNKDA---KSLHSVIDSDGLPYVGQMIHP 793
HG +Y+T+ ++L ++GN+ R KLF + +D DGLP +G M+
Sbjct: 806 HGTVYKTKILNL-EEGNRKSRSNKSIAKLFGFAPEGLIKAESKETLDIDGLPRIGTMLRS 864
Query: 794 GEPYCSI----YDKTTNSWRTN-------SRKGSESVFVDYVAVDMKNSKNLP-QKANIR 841
G+P + YD T + K E FV+ V V P QK +++
Sbjct: 865 GDPIAAFHTVSYDAATGDYVNRDGQTQFLKYKEDEIAFVEEVRVIGSEDGTQPCQKVSVK 924
Query: 842 FRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAML 901
R R+P++GDKFSSRHGQKGV SQ +P DMPFS +G++PD+IINPHAFPSRMTI M
Sbjct: 925 LRTPRSPVVGDKFSSRHGQKGVVSQKFPTTDMPFS-ESGIQPDVIINPHAFPSRMTIGMF 983
Query: 902 LESVAAK 908
+ES+A K
Sbjct: 984 IESLAGK 990
>gi|281210835|gb|EFA85001.1| RNA polymerase I [Polysphondylium pallidum PN500]
Length = 1109
Score = 663 bits (1711), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/954 (39%), Positives = 560/954 (58%), Gaps = 97/954 (10%)
Query: 10 EPLRELVRHHIESFDYMLDEGLS------------------------------------- 32
E LR+LV HI+S+D+ ++ LS
Sbjct: 3 EELRQLVTPHIDSYDFFAEKALSIIVAGLPPVYINNRAENADSTQKHWRLKFKDVTISKP 62
Query: 33 ------EMF-DHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFN--FGQFPVMLKTRRC 83
++F RQ+ SY+ ++ V S E +N G PVM+ + RC
Sbjct: 63 IKSDNRQLFPTESRQSGTSYSAPMVGTVAL-LKSPTSDEEHETYNVQLGNIPVMVNSSRC 121
Query: 84 HLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYT 143
HL+G S +LV EE E+GGYFI+NG E+V R ++ K N+P+++ R + +R GYT
Sbjct: 122 HLRGLTSAQLVKNHEEELEVGGYFIINGNEKVMRMLVANKANHPIALTRQGWTNRGPGYT 181
Query: 144 DKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFN 203
V +R VR D+SS+T L+Y+ +G + F+ + +EY +PV ++LKALVDT D EIF
Sbjct: 182 KFGVTLRSVRPDRSSLTNNLHYISDGQITFRFYFRRQEYFIPVTLLLKALVDTTDKEIFT 241
Query: 204 HLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQ 263
+ +G + +++RV++ L E + L T+ + L +IG ++ +
Sbjct: 242 QIV----------QGDFENTFLTDRVELTLREQKVKGLNTKDEILDYIGSRYRHKANLPD 291
Query: 264 SESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILL 323
S + +AE +I ++ VHL D DKFN+LI M+QKL+++V + DN D+ E+LL
Sbjct: 292 SFTNQQIAEYMIDNFFLVHLPDYRDKFNILIVMIQKLYAVVQGKNGCDNIDATSFHEVLL 351
Query: 324 PGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIE 383
P E+L ++L + + I N +K +LA KK ++ S IG
Sbjct: 352 P---------ERLTEYLEVSRAMYLKAI--NAQKTINEDLA-FKKAFDR--SLNIGEKFN 397
Query: 384 TMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLP 443
L TG L + +GLDLQQ +G+ + A++LNF+R+IS FR++HRGA FA ++TTS+RKL+P
Sbjct: 398 YFLATGNLVSSSGLDLQQTSGFAIIADKLNFIRYISHFRSIHRGAFFATMKTTSIRKLMP 457
Query: 444 ESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIP 503
ES+GFLCPVHTPDG PCGLLNH+++ C + ++ ++ S L + GV I
Sbjct: 458 ESFGFLCPVHTPDGAPCGLLNHLSANCIITKDPSQDEKSKEGVRLLPSFL-MAHGVTSI- 515
Query: 504 SLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSA-ASVIPDDLEVGYVP 562
+ + P L V+L+G+++G I + +V LR LK + +P +EV Y P
Sbjct: 516 ---DVTTNFQPNSLPVMLNGKLIGRINDGLAQDLVDLLRYLKSTGDEKAVPQTMEVAYAP 572
Query: 563 --LSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDG 619
S GG YPG++LFT+ +F+R V N+ +S ELIGP EQ++M I P+
Sbjct: 573 KEQSKGGQYPGIFLFTTGARFMRTVINL-----KSGKNELIGPQEQLYMNISIMPEE--- 624
Query: 620 GRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRAD 679
R++ TH E+ PT M SV ANLTP+SD+NQSPRNMYQCQMAKQTMG + + +R D
Sbjct: 625 -VRDS--TTHCELSPTAMFSVEANLTPFSDYNQSPRNMYQCQMAKQTMGTPLHSYAYRTD 681
Query: 680 QKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGM 739
KLY +Q Q PIV T +KY I++YP G NA++AV++ TGYDMEDAMI+NKS+ +RG
Sbjct: 682 NKLYKVQNIQRPIVATENQSKYRINDYPHGCNAVIAVVSNTGYDMEDAMIINKSAFERGF 741
Query: 740 CHGQIYQTETIDLSDDGNKVDRGQ-KLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYC 798
HG +Y+ E +D+ + ++++ G+ + R N + +L ID DGLPY+G++I PGEPY
Sbjct: 742 GHGSVYKNEFVDIDEGKSRLEMGKTSISRPNYTSDNLDQWIDRDGLPYIGRLIKPGEPYY 801
Query: 799 SIYDKTTNSWRTNSRKGSESVFVDYVAV----DMKNSKNLPQKANIRFRHTRNPIIGDKF 854
+++ N T + KG E +++ + + + + K ++ R RNP+IGDKF
Sbjct: 802 TVFSTIENKQVTKNYKGKEDAWIEEIMILGGSTQVRASTMITKFVVKLRFDRNPVIGDKF 861
Query: 855 SSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
SSRHGQKGV SQLWP+I+MPF+ +G++PD+IINP+AFPSRMTI ML+E +AAK
Sbjct: 862 SSRHGQKGVLSQLWPEINMPFTE-SGLKPDVIINPNAFPSRMTIGMLVEILAAK 914
>gi|451852990|gb|EMD66284.1| hypothetical protein COCSADRAFT_179601 [Cochliobolus sativus
ND90Pr]
Length = 1213
Score = 662 bits (1709), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/907 (41%), Positives = 536/907 (59%), Gaps = 78/907 (8%)
Query: 39 RQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKE 98
R+ +Y GK+ A +E++ + E + G P+MLK+ RCHL+G LV KE
Sbjct: 125 RERHATYRGKMRARLEWRVNNGD--WQEEVVDLGSIPIMLKSNRCHLEGLPPAALVKAKE 182
Query: 99 EAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSS 158
E+ E+GGYFI+NG E++ R + + +NYPM++ R +F +R GYT + +R +R DQ+S
Sbjct: 183 ESDELGGYFIINGNEKIIRMLQVNHRNYPMAIKRGAFTNRGPGYTQFGIQLRSMRPDQTS 242
Query: 159 VTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKG 218
T L+YL +G+V F + EYL+P+ ++LKALV+TND EIF L + ++K
Sbjct: 243 QTNALHYLSDGNVNFRFSWRKAEYLVPICMILKALVETNDREIFEGLVGAAGSEGLEQK- 301
Query: 219 AVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDY 278
V++RV+++L + L ++ + ++GE F+ V+ + +R
Sbjct: 302 ----QFVTDRVELLLRTYKVYGLHSKAKTRAYLGEKFKVVMQLPADVTDEEAGTEFLRKI 357
Query: 279 IFVHLNDNN-------DKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIY 331
+ HL N DKF +L+FM +KL++LV+ DNPD++QNQEILL G L +
Sbjct: 358 VLPHLGCVNVTPAQDADKFRMLLFMTRKLYALVEGDCAVDNPDAVQNQEILLGGQLYGMI 417
Query: 332 LKEKLEDWLRKGKKLIQDEIENNGKKFDF-------FNLANIKKVMEKNPSKQIGTSIET 384
LKE+LE+WL + ++++ G++ ++ F+ K++ + IG ++E
Sbjct: 418 LKERLEEWLNSFQIVLREW----GRRTEYRPFTSQEFHKDWSSKILRRT-QLAIGQAMEY 472
Query: 385 MLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPE 444
L TG L + TGLDLQQ +G+ V AE+LNF RFIS FR VHRGA FA L+TT+VRKLLPE
Sbjct: 473 FLSTGNLVSPTGLDLQQTSGFVVVAEKLNFPRFISHFRMVHRGAFFATLKTTTVRKLLPE 532
Query: 445 SWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPS 504
SWGF+CPVHTPDG PCGLLNH + TC++A+ N+ D S + + + + S
Sbjct: 533 SWGFMCPVHTPDGSPCGLLNHFSHTCKIATT-----NL-DVSAVPKLVAELGVSSKSSAS 586
Query: 505 LPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLS 564
L A + V LDGRV+G + + + LR KV + +P ++E+GY+P S
Sbjct: 587 LD--------ASVVVQLDGRVLGFCSPKQAKIISDTLRYWKVEGSHGVPVEMEIGYIPNS 638
Query: 565 LGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDG----GDGG 620
G YPG+Y+F+ + RPV+ + L ++ +GPFEQ +M I D GD
Sbjct: 639 NNGQYPGVYMFSQCSRMYRPVKYLPL-----SKLDYVGPFEQPYMSISVTDAEIVSGD-- 691
Query: 621 RRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQ 680
+TH E PT + S++AN TP+SD NQSPRNMYQCQM KQ+MG A+++R D
Sbjct: 692 ------STHVEFEPTNIFSIIANQTPFSDFNQSPRNMYQCQMGKQSMGTPGTAMRYRTDN 745
Query: 681 KLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMC 740
K Y LQT QTPI R Y +YG+D +P G NA+VAV++YTGYDM+DAMILNKSS +RG
Sbjct: 746 KTYRLQTGQTPIARPPLYNEYGMDNFPNGMNAVVAVISYTGYDMDDAMILNKSSHERGFG 805
Query: 741 HGQIYQTETIDLSDDGNKVDRGQ----KLFRRNKDA---KSLHSVIDSDGLPYVGQMIHP 793
HG +Y+T+ ++L ++GN+ R KLF + +D DGLP +G M+
Sbjct: 806 HGTVYKTKILNL-EEGNRKSRSNKSIAKLFGFAPEGLVKAESKETLDIDGLPRIGTMLRS 864
Query: 794 GEPYCSI----YDKTTNSWRTN-------SRKGSESVFVDYVAVDMKNSKNLP-QKANIR 841
G+P + YD T + K E FV+ V V P QK +++
Sbjct: 865 GDPIAAFHTVSYDAATGDYVNRDGQTQFLKYKEDEIAFVEEVRVIGSEDGTQPCQKVSVK 924
Query: 842 FRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAML 901
R R+P++GDKFSSRHGQKGV SQ +P DMPFS +G++PD+IINPHAFPSRMTI M
Sbjct: 925 LRTPRSPVVGDKFSSRHGQKGVVSQKFPTTDMPFS-ESGIQPDVIINPHAFPSRMTIGMF 983
Query: 902 LESVAAK 908
+ES+A K
Sbjct: 984 VESLAGK 990
>gi|301622234|ref|XP_002940442.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2-like isoform
1 [Xenopus (Silurana) tropicalis]
Length = 1135
Score = 662 bits (1707), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/954 (39%), Positives = 551/954 (57%), Gaps = 107/954 (11%)
Query: 11 PLRELVRHHIESFDYMLDEGLS--------------------EMFD-------------- 36
PL+++ R HI+SF+ + EGLS ++ D
Sbjct: 34 PLQDITRAHIDSFNQAMTEGLSLAVQAMKPLEFTYKNDKVALQIVDAVITPPLVPKGSIC 93
Query: 37 --------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGA 88
CR + +Y GKL ADV + ++++ G P+M+K++ C+L
Sbjct: 94 KEQKIYPAECRGRRSTYRGKLTADVSWSLNGLQKGIIKQ--TLGHIPIMVKSKFCNLYDL 151
Query: 89 DSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVV 148
+ ++L+ EE EMGGYFI+NG+E+V R +I+P++N+P++M+R +++R GYT +
Sbjct: 152 NPKQLLEHHEEEQEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWKNRGPGYTQYGIS 211
Query: 149 IRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCC 208
+RCVR + ++V + L+YL NGSV + F Q + + +P+G LKALVD +D +IF L
Sbjct: 212 LRCVRDEHTAVNMNLHYLENGSVMVNFIYQKELFFIPLGFALKALVDYSDYQIFTELI-- 269
Query: 209 YDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQP---VIDGLQSE 265
KG + + + +L V + ++ L+++GE F+ + D E
Sbjct: 270 --------KGKEENSFYRDCMTQMLRAVVEEGCHSQKNVLKYLGERFRVKFYLPDWFTDE 321
Query: 266 SYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPG 325
AE +I I +HL N +KF +L M QKLF+ + +NPDSL QE++ PG
Sbjct: 322 Q---AAEFLISQCICIHLKTNVEKFYMLCMMTQKLFTFAKDGCMEENPDSLMYQEVMTPG 378
Query: 326 HLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETM 385
L+ ++LKEK+E WL ++ ++ K+ +L+ + + + + E +
Sbjct: 379 QLLLMFLKEKMESWLLG----VKVNLDKRAHKYTV-DLSTETMMKVFTSTSDLTKTCEYL 433
Query: 386 LKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPES 445
L TG L ++TGL + Q +G V A++LNF+R++S FR VHRGA+FA +RTTSVR+LLPES
Sbjct: 434 LATGNLRSKTGLGMLQSSGLVVVADKLNFIRYLSHFRCVHRGAAFAKMRTTSVRRLLPES 493
Query: 446 WGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIP-- 503
WGFLCPVHTPDGEPCGL+NHMT+ C + + + T + +L +GM P
Sbjct: 494 WGFLCPVHTPDGEPCGLMNHMTAACEIVTQ----------TSYNTLLPLLLCSLGMTPVD 543
Query: 504 -SLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVP 562
+ KL P V+LDG +VG + + +V+ LR KV +P E+ +P
Sbjct: 544 GTAGKLFADCYP----VMLDGAMVGWVEKTIAPGLVSALRNYKVKHEKNVPPWTEIVLIP 599
Query: 563 LSLGGA-YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGR 621
++ + YPGL+LFT+P + VRPVRN++L EE L+G EQVF+ + +G
Sbjct: 600 MTGKASLYPGLFLFTTPCRMVRPVRNLALGKEE-----LLGTLEQVFLNVAVYEG----- 649
Query: 622 RNAFPA--THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRAD 679
+ P TH+E P MLSVVAN P+SDHNQSPRNMYQCQM KQTMGF + + R+D
Sbjct: 650 -DIVPGETTHQEFFPHSMLSVVANFIPFSDHNQSPRNMYQCQMGKQTMGFPLMTYQDRSD 708
Query: 680 QKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGM 739
KLY LQTPQ+P+VR + Y Y +D YP GTNAIVAV++YTGYDMEDAM+LNKSS +RG
Sbjct: 709 NKLYRLQTPQSPLVRPSMYDYYEMDNYPIGTNAIVAVISYTGYDMEDAMVLNKSSWERGF 768
Query: 740 CHGQIYQTETIDLSDDGNKVDRGQK--LFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPY 797
HG +Y+T+ +DLS K+ G+ +F D + + +DSDGLP VG ++ G+PY
Sbjct: 769 AHGSVYKTDHVDLS---KKLKDGEDNLVFGIKPDDERVKGRLDSDGLPAVGAVLQFGDPY 825
Query: 798 CSIYDKTTNSWRTNSRKGSESVFVDYVAV---DMKNSKNLPQKANIRFRHTRNPIIGDKF 854
+ T K E+ +D + + D+ K + + R RNP IGDKF
Sbjct: 826 YGYLNLNTGESFVAYYKSKENCVIDNIKICSNDIGFGKF--KSVCVTMRIPRNPTIGDKF 883
Query: 855 SSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
+SRHGQKG+ S+LWP DMPF+ +GM PD++ NPH FPSRMTI ML+ES+A K
Sbjct: 884 ASRHGQKGILSRLWPSEDMPFTE-SGMVPDILFNPHGFPSRMTIGMLIESMAGK 936
>gi|301622236|ref|XP_002940443.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2-like isoform
2 [Xenopus (Silurana) tropicalis]
Length = 1079
Score = 660 bits (1704), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/912 (40%), Positives = 541/912 (59%), Gaps = 79/912 (8%)
Query: 11 PLRELVRHHIESFDYMLDEGLSEMFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFN 70
PL+++ R HI+SF+ + EGLS + ADV + ++++
Sbjct: 34 PLQDITRAHIDSFNQAMTEGLSL--------------AVQADVSWSLNGLQKGIIKQ--T 77
Query: 71 FGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSM 130
G P+M+K++ C+L + ++L+ EE EMGGYFI+NG+E+V R +I+P++N+P++M
Sbjct: 78 LGHIPIMVKSKFCNLYDLNPKQLLEHHEEEQEMGGYFIINGIEKVIRMLIMPRRNFPIAM 137
Query: 131 VRSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVL 190
+R +++R GYT + +RCVR + ++V + L+YL NGSV + F Q + + +P+G L
Sbjct: 138 IRPKWKNRGPGYTQYGISLRCVRDEHTAVNMNLHYLENGSVMVNFIYQKELFFIPLGFAL 197
Query: 191 KALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQH 250
KALVD +D +IF L KG + + + +L V + ++ L++
Sbjct: 198 KALVDYSDYQIFTELI----------KGKEENSFYRDCMTQMLRAVVEEGCHSQKNVLKY 247
Query: 251 IGEHFQP---VIDGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHT 307
+GE F+ + D E AE +I I +HL N +KF +L M QKLF+
Sbjct: 248 LGERFRVKFYLPDWFTDEQ---AAEFLISQCICIHLKTNVEKFYMLCMMTQKLFTFAKDG 304
Query: 308 SVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIK 367
+ +NPDSL QE++ PG L+ ++LKEK+E WL ++ ++ K+ +L+
Sbjct: 305 CMEENPDSLMYQEVMTPGQLLLMFLKEKMESWLLG----VKVNLDKRAHKYTV-DLSTET 359
Query: 368 KVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRG 427
+ + + + E +L TG L ++TGL + Q +G V A++LNF+R++S FR VHRG
Sbjct: 360 MMKVFTSTSDLTKTCEYLLATGNLRSKTGLGMLQSSGLVVVADKLNFIRYLSHFRCVHRG 419
Query: 428 ASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSK 487
A+FA +RTTSVR+LLPESWGFLCPVHTPDGEPCGL+NHMT+ C + + +
Sbjct: 420 AAFAKMRTTSVRRLLPESWGFLCPVHTPDGEPCGLMNHMTAACEIVTQ----------TS 469
Query: 488 MRTSILRVLIGVGMIP---SLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRL 544
T + +L +GM P + KL P V+LDG +VG + + +V+ LR
Sbjct: 470 YNTLLPLLLCSLGMTPVDGTAGKLFADCYP----VMLDGAMVGWVEKTIAPGLVSALRNY 525
Query: 545 KVSAASVIPDDLEVGYVPLSLGGA-YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGP 603
KV +P E+ +P++ + YPGL+LFT+P + VRPVRN++L EE L+G
Sbjct: 526 KVKHEKNVPPWTEIVLIPMTGKASLYPGLFLFTTPCRMVRPVRNLALGKEE-----LLGT 580
Query: 604 FEQVFMEIRCPDGGDGGRRNAFPA--THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQ 661
EQVF+ + +G + P TH+E P MLSVVAN P+SDHNQSPRNMYQCQ
Sbjct: 581 LEQVFLNVAVYEG------DIVPGETTHQEFFPHSMLSVVANFIPFSDHNQSPRNMYQCQ 634
Query: 662 MAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTG 721
M KQTMGF + + R+D KLY LQTPQ+P+VR + Y Y +D YP GTNAIVAV++YTG
Sbjct: 635 MGKQTMGFPLMTYQDRSDNKLYRLQTPQSPLVRPSMYDYYEMDNYPIGTNAIVAVISYTG 694
Query: 722 YDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQK--LFRRNKDAKSLHSVI 779
YDMEDAM+LNKSS +RG HG +Y+T+ +DLS K+ G+ +F D + + +
Sbjct: 695 YDMEDAMVLNKSSWERGFAHGSVYKTDHVDLS---KKLKDGEDNLVFGIKPDDERVKGRL 751
Query: 780 DSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAV---DMKNSKNLPQ 836
DSDGLP VG ++ G+PY + T K E+ +D + + D+ K +
Sbjct: 752 DSDGLPAVGAVLQFGDPYYGYLNLNTGESFVAYYKSKENCVIDNIKICSNDIGFGKF--K 809
Query: 837 KANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRM 896
+ R RNP IGDKF+SRHGQKG+ S+LWP DMPF+ +GM PD++ NPH FPSRM
Sbjct: 810 SVCVTMRIPRNPTIGDKFASRHGQKGILSRLWPSEDMPFTE-SGMVPDILFNPHGFPSRM 868
Query: 897 TIAMLLESVAAK 908
TI ML+ES+A K
Sbjct: 869 TIGMLIESMAGK 880
>gi|219111265|ref|XP_002177384.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217411919|gb|EEC51847.1| predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1]
Length = 1147
Score = 660 bits (1703), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/962 (39%), Positives = 541/962 (56%), Gaps = 88/962 (9%)
Query: 12 LRELVRHHIESFDYMLDEGLSE-------------------------------------M 34
LR L H++SFDY ++GL+ +
Sbjct: 3 LRTLTAPHVDSFDYFWEQGLARGVQDIEPAEFNIVDPQKLRDNPIAKPAKAPGERSQKLL 62
Query: 35 FDHCRQAKISYTGKLMADVEFQYL------DAGSPVVRERFNFGQFPVMLKTRRCHLQGA 88
CR+ K+ Y G++ A ++ + D S VR FG P+M+ ++ CHL+G
Sbjct: 63 PRECRERKLVYAGEISATFCYRMIQRRNGVDFPSRPVRLNKTFGDMPIMVMSKGCHLEGT 122
Query: 89 DSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVV 148
++LV LKEE E GGYFI+ G+ER R + +P++N+ ++ RSS+++R YTD V
Sbjct: 123 TPKQLVKLKEEDNEFGGYFIVGGIERCVRLLQVPRRNHATAIQRSSYKNRGNTYTDLGVA 182
Query: 149 IRCVRK--DQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDT-NDLEIFNHL 205
+RC R D S++T ++YL G L F + +E+L+P ++L+AL + + E++ +
Sbjct: 183 MRCARHNGDMSAITNTVHYLTTGGANLKFVAKKQEFLIPAILILRALSGSESQTELYERI 242
Query: 206 TCCYDEKYKKEKGAVGSPLVSERVKIIL--AEVQDLSLTTRLQCLQHIGEHFQPVIDGLQ 263
+G + + R ++L A + SL T +CL IG F+ + +
Sbjct: 243 V----------QGDQSNTFLVARAGLLLQDARARFGSLNTPDECLAFIGTRFRRLSQKAE 292
Query: 264 SESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILL 323
+ S + +IR ++ +HL DK L+ ML+KL++ DN DSLQNQEILL
Sbjct: 293 TTSDVEIGHHIIRRFVLIHLPTYRDKLECLLLMLRKLYAFAAGDCGVDNADSLQNQEILL 352
Query: 324 PGHLITIYLKEKLEDWLRKGKKLI-----QDEIENNGKKFDFFNLANIKKVMEKNPSKQI 378
PGHL+ ++KEK E++L + + +D + K D + S I
Sbjct: 353 PGHLMCTFIKEKFEEFLSSLRLALLSDLRKDFARTSAKLTDAKYWGKMVDRHAGKASGGI 412
Query: 379 GTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSV 438
G ++ L TG + + +GLDL Q +GYT+ AERLNFLR+ + FR+VHRG F ++TT+V
Sbjct: 413 GKKVQHFLSTGNIVSTSGLDLMQVSGYTIVAERLNFLRYCAHFRSVHRGQFFMEMKTTAV 472
Query: 439 RKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASY---YDSRGNIRDFSKMRTSILRV 495
RKLLP+ WGFLCPVHTPDG PCGLL+H+ +V +Y D++G I + + +
Sbjct: 473 RKLLPDQWGFLCPVHTPDGGPCGLLSHLALKSKVMAYPSRLDAKGMIDLDDLLLSLGV-T 531
Query: 496 LIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDD 555
G G ++ + L V +DGR+VG S ++ + AHLR+LKV V+P
Sbjct: 532 PCGAGSRNGDGRIGSTH--LHLPVSIDGRIVGGASPSVLKIIAAHLRKLKVDNPPVVPPT 589
Query: 556 LEVGYVPLSLGGA-YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCP 614
LEVG VP GA YPGLYLFT + VRPV N S + E IGP EQ +M+I C
Sbjct: 590 LEVGLVPPGNPGAPYPGLYLFTCAARLVRPVLN-----RASGHTEFIGPLEQGYMDIACL 644
Query: 615 DGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQAL 674
D + R TH+E+ PT MLS++ANLTP+SD NQSPRNMYQCQM KQTMG +L
Sbjct: 645 D--EDIREGI--TTHQELDPTNMLSLIANLTPFSDQNQSPRNMYQCQMGKQTMGTPAHSL 700
Query: 675 KFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSS 734
+R D KLY LQTPQ P+V+T+ + +Y +DEYP GTNA+VAVL+YTG+DMED++ILNKSS
Sbjct: 701 PYRPDNKLYRLQTPQAPVVQTSIHGEYKMDEYPNGTNAVVAVLSYTGFDMEDSVILNKSS 760
Query: 735 VDRGMCHGQIYQTETIDLSDDGNKV-------DRGQKLFRRNKDAKSLHSVIDSDGLPYV 787
V+RG H +Y+T + L ++ D K + K K ++ + DGLP V
Sbjct: 761 VERGFAHASVYKTIDVSLQEEAKMTGASSSGEDVRMKFSNKVKFDKVMYPSLQDDGLPQV 820
Query: 788 GQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYV-AVDMKNSKNLPQKANIRFRHTR 846
G + G+P + D + R K E +V V A+ + K K +I R R
Sbjct: 821 GDCMTEGDPLYCVVDSISGMDRAAKHKEREIAYVQSVRALGNDSGKGADNKVSITLRFPR 880
Query: 847 NPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVA 906
NP++GDKFSSRHGQKGV S LWP DMPFS +G+ PD+IINPHAFPSRMTI M++ES+A
Sbjct: 881 NPVLGDKFSSRHGQKGVLSILWPQEDMPFS-ESGISPDVIINPHAFPSRMTIGMMVESMA 939
Query: 907 AK 908
K
Sbjct: 940 GK 941
>gi|407924585|gb|EKG17618.1| DNA-directed RNA polymerase subunit 2 domain 6 [Macrophomina
phaseolina MS6]
Length = 823
Score = 659 bits (1700), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 363/853 (42%), Positives = 521/853 (61%), Gaps = 68/853 (7%)
Query: 79 KTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDR 138
++ +CHL+G +LV+ KEE E+GGYF++NG+E++ R +I+ K+N+PM+++R SF++R
Sbjct: 6 QSNKCHLEGMTPAELVNAKEETEELGGYFVVNGIEKLIRMLIVGKRNFPMAIIRPSFQNR 65
Query: 139 REGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTND 198
+ YT + IR VR DQ+S T L+YL +G+V F + EYL+PV ++LKALV+TND
Sbjct: 66 GQSYTKFGIQIRSVRPDQTSQTNVLHYLSDGNVTFRFSWRKNEYLVPVMMILKALVETND 125
Query: 199 LEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPV 258
EIF L KG V++RV+++L + + ++ + ++G F+ V
Sbjct: 126 REIFEGLVGA-----AGSKGLADKQFVTDRVELLLRTYKVYGIHSKAKTRAYLGSKFKVV 180
Query: 259 I---DGLQSESYYAVAETVIRDYIFVHLNDNN-------DKFNLLIFMLQKLFSLVDHTS 308
+ D + E A AE +R + HL ++ DKF +L+FM++KL+SLV+
Sbjct: 181 LGVPDDMPDED--AGAE-FLRRIVLPHLGSSDVTESQDIDKFKMLLFMIKKLYSLVEGEC 237
Query: 309 VSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFD--FFNLANI 366
DNPD++QNQEILL G L + LKEK+EDWL + L + N +F F +
Sbjct: 238 TVDNPDAVQNQEILLGGFLYGMILKEKIEDWLMSIRALASEWCRNTQHRFTDPEFEKDFL 297
Query: 367 KKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHR 426
+++ + ++ +G ++E L TG L + +GLDLQQ +GYTV AE++NF RFIS FR VHR
Sbjct: 298 GRIVRRT-NENLGNAMEYFLSTGNLVSSSGLDLQQTSGYTVVAEKINFYRFISHFRMVHR 356
Query: 427 GASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFS 486
G+ FA L+TT+VRKLLPESWGFLCPVHTPDG PCGLLNH+ C++A+ D
Sbjct: 357 GSFFAELKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHLAHKCKIAT--------SDVD 408
Query: 487 KMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKV 546
L +G+ + S L++ + V LDGR++G + + + LR KV
Sbjct: 409 SSAIPGLVAQLGISNVSS--ALLEDS----VVVQLDGRILGFCSLKQAKVISDTLRYWKV 462
Query: 547 SAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQ 606
+P +LE+GY+P+S GG YPG+Y+FT + RPV+ + L ++ +GPFEQ
Sbjct: 463 EGTHNVPRELEIGYIPMSNGGQYPGVYMFTQSARLYRPVKYLPL-----DGLDYVGPFEQ 517
Query: 607 VFMEIRC--PDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAK 664
+M I C P+ G +TH E PT +LS+VAN TP+SD NQSPRNMYQCQM K
Sbjct: 518 PYMTIACTEPEIVSG------ESTHVEYDPTNILSIVANQTPFSDFNQSPRNMYQCQMGK 571
Query: 665 QTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDM 724
Q+MG A +R D K Y LQT QTP+VR + +YG+D +P G NA+VAV++YTGYDM
Sbjct: 572 QSMGTPGTATAYRTDNKSYRLQTGQTPVVRAPLHNEYGLDNFPNGMNAVVAVISYTGYDM 631
Query: 725 EDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKV---DRGQKLFRRNKDA---KSLHSV 778
+DA I+NKS+ +RG HG IY+T+ ++L +DG++ R KLF D
Sbjct: 632 DDAFIMNKSAHERGFGHGTIYKTKKVEL-NDGSRTKGSKRVTKLFGFAPDGIVKADWRLK 690
Query: 779 IDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRT-----------NSRKGSESVFVDYVAVD 827
+D DGLP+VG M+ G+ C+ + T ++ + K E F++ V +
Sbjct: 691 LDDDGLPHVGTMMQKGDILCAYHTVTYDASKQEYVNKDGQTSFEKYKDDEVGFIEEVRII 750
Query: 828 MKNSKNLP-QKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLI 886
++ P Q +I+ R R+P+IGDKFSSRHGQKGV SQ WP IDMPFS +GM+PD+I
Sbjct: 751 GSDTGAEPLQAVSIKIRVPRSPVIGDKFSSRHGQKGVMSQKWPCIDMPFS-ESGMQPDII 809
Query: 887 INPHAFPSRMTIA 899
INPHAFPSRMTI
Sbjct: 810 INPHAFPSRMTIG 822
>gi|221039778|dbj|BAH11652.1| unnamed protein product [Homo sapiens]
Length = 996
Score = 657 bits (1696), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/838 (42%), Positives = 501/838 (59%), Gaps = 47/838 (5%)
Query: 77 MLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFR 136
M+K++ C+L+ Q L+ EEA EMGGYFI+NG+E+V R +I+P++N+P++M+R ++
Sbjct: 1 MVKSKLCNLRNLPPQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWK 60
Query: 137 DRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDT 196
R GYT V + CVR++ S+V + L+YL NG+V L F + + + LP+G LKALV
Sbjct: 61 TRGPGYTQYGVSMHCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALKALVSF 120
Query: 197 NDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQ 256
+D +IF L KE + VS+ ++I++ E +T+ Q L ++GE F+
Sbjct: 121 SDYQIFQELI------KGKEDDSFLRNSVSQMLRIVMEE----GCSTQKQVLNYLGECFR 170
Query: 257 PVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
++ AE + I +HL N +KF +L M +KLF+L + DNPDSL
Sbjct: 171 VKLNVPDWYPNEQAAEFLFNQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMEDNPDSL 230
Query: 317 QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
NQE+L PG L ++LKEKLE WL K + + + NL I +
Sbjct: 231 VNQEVLTPGQLFLMFLKEKLEGWLVSIKIAFDKKAQKTSVSMNTDNLMRIFTM-----GI 285
Query: 377 QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
+ E + TG L ++TGL L Q +G V A++LNF+R++S FR VHRGA FA +RTT
Sbjct: 286 DLTKPFEYLFATGNLRSKTGLGLLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTT 345
Query: 437 SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
+VR+LLPESWGFLCPVHTPDGEPCGL+NH+T+ C V + + SI +L
Sbjct: 346 TVRRLLPESWGFLCPVHTPDGEPCGLMNHLTAVCEVVTQF----------VYTASIPALL 395
Query: 497 IGVGMIPSLPKLVKSGPPAVLS----VLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVI 552
+G+ P + P S VLLDG +VG + + LR KV I
Sbjct: 396 CNLGVTP-----IDGAPHRSYSECYPVLLDGVMVGWVDKDLAPGIADSLRHFKVLREKRI 450
Query: 553 PDDLEVGYVPLSLGGA-YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEI 611
P +EV +P++ + YPGL+LFT+P + VRPV+N++L EE LIG EQ+FM +
Sbjct: 451 PPWMEVVLIPMTGKPSLYPGLFLFTTPCRLVRPVQNLALGKEE-----LIGTMEQIFMNV 505
Query: 612 RCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSV 671
+ A TH+E+ P +LSV+AN P+SDHNQSPRNMYQCQM KQTMGF +
Sbjct: 506 AIFED----EVFAGVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPL 561
Query: 672 QALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILN 731
+ R+D KLY LQTPQ+P+VR + Y Y +D YP GTNAIVAV++YTGYDMEDAMI+N
Sbjct: 562 LTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVN 621
Query: 732 KSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMI 791
K+S +RG HG +Y++E IDLS+ + D + D + L +D DGLP++G +
Sbjct: 622 KASWERGFAHGSVYKSEFIDLSEKIKQGDSSLVFGIKPGDPRVLQK-LDDDGLPFIGAKL 680
Query: 792 HPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHTRNPII 850
G+PY S + T K E+ VD + V ++ + K I R RNP I
Sbjct: 681 QYGDPYYSYLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGKFKCVCITMRVPRNPTI 740
Query: 851 GDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
GDKF+SRHGQKG+ S+LWP DMPF+ +GM PD++ NPH FPSRMTI ML+ES+A K
Sbjct: 741 GDKFASRHGQKGILSRLWPAEDMPFTE-SGMVPDILFNPHGFPSRMTIGMLIESMAGK 797
>gi|403416652|emb|CCM03352.1| predicted protein [Fibroporia radiculosa]
Length = 1192
Score = 657 bits (1696), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 371/891 (41%), Positives = 533/891 (59%), Gaps = 100/891 (11%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
R+ SY G+++ + ++ D P+ E + G P+M+++ RC+L+G S +LVS
Sbjct: 132 ARERLTSYRGRMVVKLCWRVNDG--PIEIETKDCGLLPLMVRSVRCNLRGMSSAELVSKH 189
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
EE+ E GGYFI+NG ER+ R +ILP++++ +S+VR SF +R YT AV IRCVR DQ+
Sbjct: 190 EESEEFGGYFIINGNERLIRYLILPRRHHVISLVRPSFANRGPSYTAYAVQIRCVRPDQT 249
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
SVT L+YL NGS L F + +EY++P+ ++LKALV +D EIF + + Y+
Sbjct: 250 SVTNTLHYLSNGSAMLRFNWRKQEYVIPIMLILKALVSASDKEIFEGVMM---QDYEDT- 305
Query: 218 GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRD 277
+++RV+++L + SL T QCL+ +G F+ V++ + + A+
Sbjct: 306 ------FLTDRVELLLRSFKMYSLVTGDQCLEFLGNKFRVVLNMPEDWTNKAIG------ 353
Query: 278 YIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLE 337
++++QK+ H S E+LLPG L + +KE+LE
Sbjct: 354 ----------------VWLVQKI-----HAS---------EAEVLLPGTLYGMIIKERLE 383
Query: 338 DWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGL 397
+ L I+ ++ + DFF+ I+KV+ + + IG+ + L TG L + TGL
Sbjct: 384 EALNGFANGIRQDVNRSEASVDFFDKRYIRKVLGRT-NFDIGSRMANFLATGNLISPTGL 442
Query: 398 DLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDG 457
DLQQ +G+T+ AE+LN+ R+IS FR++HRGA FA L+TT+VRKLLPE+WGFLCPVHTPDG
Sbjct: 443 DLQQASGFTIVAEKLNWQRYISHFRSIHRGAFFAELKTTTVRKLLPEAWGFLCPVHTPDG 502
Query: 458 EPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVL 517
PCGLLNH++ TCR+ + I +L GM + + L
Sbjct: 503 SPCGLLNHLSRTCRIVTE----------PATVIHIPALLAAHGMTQAFAPSIDG--RRNL 550
Query: 518 SVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTS 577
V LDG+++G P+ ++++ +LR K IP DLE+G+VP+S G YPGLY+F+S
Sbjct: 551 CVQLDGKLIGWAPAPVLQQLATNLRIWKTEHKHEIPLDLEIGFVPVSKAGQYPGLYIFSS 610
Query: 578 PPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRNAFPATHEEIHPTG 636
+ +RPV+ ++ ++ IG FEQV+M+I C P+ + G +TH E PT
Sbjct: 611 RARMMRPVKYLANGRDDQ-----IGSFEQVYMDIACTPEEIEEGV-----STHVEHSPTN 660
Query: 637 MLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTN 696
LS++ANLTP+SD NQSPRN+YQCQM KQTMG AL+ R D KLY LQ+ Q+P+VR
Sbjct: 661 FLSILANLTPFSDFNQSPRNIYQCQMGKQTMGTPATALRHRTDNKLYRLQSGQSPVVRPA 720
Query: 697 TYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDG 756
+ YG+D +P GTNAIVAV++YTGYDMEDAMILNKS+ +RG +G +Y+++T+DL D
Sbjct: 721 LHNTYGMDSFPNGTNAIVAVISYTGYDMEDAMILNKSAHERGFGYGTVYKSQTVDLKDMP 780
Query: 757 NKVDRGQKLFRRNKDAKSLH------------------SVIDSDGLPYVGQMIHPGEPYC 798
RN +LH + DGLP+VG + G+P
Sbjct: 781 GT--------SRNSSTPTLHFGFGYDIRTFGDKQHPCCDFLGDDGLPFVGVRLSAGDPLA 832
Query: 799 SIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLP-QKANIRFRHTRNPIIGDKFSSR 857
+ D TT + KG E +VD V + ++ + QK +I R TR+P+IGDKFSSR
Sbjct: 833 AYVDDTTGRTKFVKYKGDEVAYVDTVRLLGSDAGDSELQKVHISLRITRSPVIGDKFSSR 892
Query: 858 HGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
HGQKGVCSQ WP IDMPFS +GM+PD+IINPHAFPSRMTI ML+ES+A K
Sbjct: 893 HGQKGVCSQKWPAIDMPFS-ESGMQPDVIINPHAFPSRMTIGMLVESMAGK 942
>gi|167537729|ref|XP_001750532.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163770953|gb|EDQ84628.1| predicted protein [Monosiga brevicollis MX1]
Length = 1136
Score = 657 bits (1696), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/877 (40%), Positives = 522/877 (59%), Gaps = 59/877 (6%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CRQ +++Y G V + + ER+ GQ P+M+ + C L G ++LV K
Sbjct: 113 CRQRRVTYKGDFYLTVNIEVEGQPNAWQVERY-VGQLPIMIMSNACRLNGLSPRELVMKK 171
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
EEA EMGGYFI+NG E++ R +++P++N+P+ + R S+ +R GY+ V +RCVR DQS
Sbjct: 172 EEAQEMGGYFIINGNEKIVRMLLMPRRNHPICLDRPSYVNRGPGYSSYGVQMRCVRPDQS 231
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
+ T+ ++Y +G+ LGF + ++YL+P ++L+AL +D +IF + +
Sbjct: 232 AQTVVVHYKNDGTCTLGFSYRKQQYLIPAILLLRALSGVSDRQIFMDIV----------R 281
Query: 218 GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRD 277
G + + + ERV+I+L + L ++ CL ++G F+ +++ S A + +
Sbjct: 282 GDMSNSFLVERVEIMLRQYTRERLFSQQACLAYLGNLFKVILNLHPETSDVEAAHILFKR 341
Query: 278 YIFVHL--NDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEK 335
+ VH+ ND K+ +L+ ++++++SL ++ DN DS QE+LLPGH+ ++KE+
Sbjct: 342 VLLVHIAPNDFQAKYRVLVGLIRRVYSLAAGSTQPDNADSQMLQELLLPGHIYCAFVKEQ 401
Query: 336 LEDWLRKGKKLIQDEIENNGKKFDFFNLANIKK-VMEKNPSKQIGTSIETMLKTGRLATQ 394
+ ++L +KL+Q ++ GK D N ++ VM + P IG+ +E + TG L +
Sbjct: 402 MSEYLVAMQKLVQTDLRM-GKTVDVSNTNYLQTDVMRRCPD--IGSKLEYFMSTGNLNSP 458
Query: 395 TGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHT 454
T LD Q G+T+ A++LNFLR++S FR VHRGA F+ ++TT+VRKLLPE+WGFLCPVHT
Sbjct: 459 TALDQMQVTGFTIVADKLNFLRYLSHFRCVHRGAYFSQMKTTAVRKLLPEAWGFLCPVHT 518
Query: 455 PDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPP 514
PDG PCGLLNH+ C + D S S+ L+G+GMI V P
Sbjct: 519 PDGAPCGLLNHLARHCLPPT------EPVDIS----SLPPTLLGLGMIA-----VSEQPH 563
Query: 515 -AVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLY 573
L VLLDG +VG + + K LR LK+ +P+ LE+ YV G +PGLY
Sbjct: 564 FHCLDVLLDGHLVGFLALEQAPKFAEQLRILKIRDDERVPNTLEIAYVAPRAAGQFPGLY 623
Query: 574 LFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIH 633
LF++P + +RPVRN+ + S E +G FEQV++ + D + TH E+
Sbjct: 624 LFSTPARLLRPVRNLRMKS-----TEFVGSFEQVYLNVAV----DPKEFVSGETTHMELT 674
Query: 634 PTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIV 693
G LS+VA+ TP+SD NQSPRNMYQCQM KQTMG QA+K+RAD KLY L + QTP+V
Sbjct: 675 KHGFLSIVASFTPFSDFNQSPRNMYQCQMGKQTMGVPGQAIKYRADNKLYSLNSGQTPLV 734
Query: 694 RTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLS 753
R Y +YG+D +P G NAIV V+AYTGYDMEDAMILNK SV+RG H ++ T+ IDL+
Sbjct: 735 RPRAYNEYGVDNFPVGNNAIVCVIAYTGYDMEDAMILNKGSVERGFMHARVLATKVIDLT 794
Query: 754 DDGNK--VDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTN 811
+ + +++ A +D+DGLP VG I G+ S D +TN RT
Sbjct: 795 EKTKSRVCHYYFGVLPKDRSANLKMEKLDADGLPRVGAHIKEGDALYSYIDGSTNESRTE 854
Query: 812 SRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDI 871
+G ++ + +K IR RNPIIGDKF+SRHGQKG+ SQLWP
Sbjct: 855 IYRGEPAI--------------IDRKVTIRLSINRNPIIGDKFASRHGQKGILSQLWPTA 900
Query: 872 DMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
DMPFS +G+ PD++ NPH FPSRMTI ML+ES+A K
Sbjct: 901 DMPFSE-SGIIPDILFNPHGFPSRMTIGMLIESMAGK 936
>gi|426223601|ref|XP_004005963.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 3
[Ovis aries]
Length = 996
Score = 656 bits (1693), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/839 (43%), Positives = 497/839 (59%), Gaps = 49/839 (5%)
Query: 77 MLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFR 136
M+K++ C+L + L+ EEA EMGGYFI+NG+E+V R +I+P++N+P++MVR ++
Sbjct: 1 MVKSKLCNLYSLPPKALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMVRPKWK 60
Query: 137 DRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDT 196
R GYT V + CVR++ S+V + L+YL NG+V L F + + + LP+G LKALV
Sbjct: 61 SRGPGYTQYGVSMHCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALKALVSF 120
Query: 197 NDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQ 256
+D +IF L KE + VS+ ++I++ E +T+ Q L ++GE F+
Sbjct: 121 SDYQIFQELI------KGKEDDSFFRNSVSQMLRIVMEE----GCSTQKQVLNYLGERFR 170
Query: 257 PVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
++ AE + I +HL N +KF +L M +KLF+L + +NPDSL
Sbjct: 171 VKLNLPDWYPNEQAAEFLFNQCICIHLKSNTEKFYVLCLMTRKLFALAKGECMEENPDSL 230
Query: 317 QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
NQE+L PG L ++LKEKLE WL K I + + + NL I +
Sbjct: 231 MNQEVLTPGQLFLMFLKEKLEAWLVSIKIAIDKKSQKTNVSLNSENLMKIFSL-----GI 285
Query: 377 QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
+ E +L TG L ++TGL Q +G V A++LNF+R++S FR VHRGA FA +RTT
Sbjct: 286 DLTKPFEYLLATGNLRSKTGLGFLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTT 345
Query: 437 SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
+VR+LLPESWGFLCPVHTPDGEPCGL+NH+T+ C V + S SI +L
Sbjct: 346 TVRRLLPESWGFLCPVHTPDGEPCGLMNHLTAICEVVTQ----------SVYTASIPALL 395
Query: 497 IGVGMIPSLPKLVKSGPP-----AVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASV 551
+G+ P G P VLLDG ++G + LR KV
Sbjct: 396 CSLGVTPV------DGTPHRPYSECYPVLLDGVMIGWADKEIAPGIADSLRHFKVLREKR 449
Query: 552 IPDDLEVGYVPLSLGGA-YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFME 610
IP +EV +P++ + YPGLYLFT+P + VRPV+N+ L EE LIG EQ+FM
Sbjct: 450 IPPWMEVVLIPMTGKPSLYPGLYLFTTPCRLVRPVQNLELGKEE-----LIGTMEQIFMN 504
Query: 611 IRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFS 670
+ + A TH+E+ P MLSV+AN P+SDHNQSPRNMYQCQM KQTMGF
Sbjct: 505 VAIFED----EVLAGVTTHQELFPHSMLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFP 560
Query: 671 VQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMIL 730
+ + R+D KLY LQTPQ+P+VR Y Y +D YP GTNAIVAV++YTGYDMEDAMI+
Sbjct: 561 LLTFQDRSDNKLYRLQTPQSPLVRPYMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIV 620
Query: 731 NKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQM 790
NK+S +RG HG +Y++E IDLS+ + D + D + + +D DGLP++G
Sbjct: 621 NKASWERGFAHGSVYKSEFIDLSEKIKQGDDSLVFGVKAGDPRVMQK-LDDDGLPFIGAQ 679
Query: 791 IHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHTRNPI 849
+ G+PY S + T K E+ VD + V ++ N K I R RNP
Sbjct: 680 LKYGDPYYSYLNLNTGEGFVMYYKSKENCIVDNIKVCSNDTGNGKFKCVCITMRVPRNPT 739
Query: 850 IGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
IGDKF+SRHGQKG+ S+LWP DMPF+ +GM PD++ NPH FPSRMTI ML+ES+A K
Sbjct: 740 IGDKFASRHGQKGILSRLWPVEDMPFTE-SGMVPDILFNPHGFPSRMTIGMLIESMAGK 797
>gi|449496428|ref|XP_004175182.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase I
subunit RPA2 [Taeniopygia guttata]
Length = 1059
Score = 656 bits (1693), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/878 (41%), Positives = 516/878 (58%), Gaps = 51/878 (5%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR + +Y G++ AD+ + D ++ G P+M+K++ C+L G Q L+
Sbjct: 28 CRGVRSTYRGRITADISWSLNDMPQGTIKH--PLGYIPIMVKSKLCNLYGFSPQDLMQHH 85
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
EE EMGGYFI+NGLE+V R +I+P++N+P++M R +++R G+T+ VV+ CV+ + +
Sbjct: 86 EEEEEMGGYFIINGLEKVVRMLIMPRRNFPLAMTRQKWKNRGPGFTEYGVVMHCVKDEHT 145
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
++ + L+YL NG V + F + + + LP+G LKALV+ D +IF L K
Sbjct: 146 AINMNLHYLENGCVMVNFIFRKELFFLPLGFALKALVNFPDYQIFEELV----------K 195
Query: 218 GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRD 277
G + V +L V D T+ L ++G+ F+ ++ + S A+ ++ +
Sbjct: 196 GREDDTFYANCVTEMLRAVVDAGCLTQQNVLDYLGKSFRVKLNLPEWYSNEQAADFLLSN 255
Query: 278 YIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLE 337
I +HL + +KF LL M QKL++ + DNPDSL N E+L PG L ++LKE+LE
Sbjct: 256 CICIHLTNRTEKFYLLCMMTQKLYAFAKGECMEDNPDSLMNHEVLTPGQLFLMFLKERLE 315
Query: 338 DWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGL 397
WL+ + +++ E K N ++ K P E +L TG L ++TGL
Sbjct: 316 TWLQSVRFVLEKRAE---KANTTLNTDSLVKAFSLAP--DFTRPFEYLLATGNLRSKTGL 370
Query: 398 DLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDG 457
+ Q +G V ++LNF+R++S FR +HRGA+F+ +RTT+VRKLLPESWGFLCPV TPDG
Sbjct: 371 GMLQASGLCVVGDKLNFIRYLSHFRCIHRGAAFSQMRTTTVRKLLPESWGFLCPVDTPDG 430
Query: 458 EPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVL 517
EPCGL+NHMT+ C + + +RD + S+ GV I + P S
Sbjct: 431 EPCGLMNHMTALCEIVT---EMVPVRDIPPLLCSL-----GVTPIDAAPSRPYS---ECY 479
Query: 518 SVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGA-YPGLYLFT 576
V+LDG +VG + ++ LRR K++ P EV +P++ + YPGL++FT
Sbjct: 480 RVVLDGSMVGWVEQELAPEIAETLRRFKITQEKRFPARAEVVLIPMTGKPSLYPGLFIFT 539
Query: 577 SPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPA--THEEIHP 634
+P + VRPVRN+S E IG EQ+FM + + P TH+E+ P
Sbjct: 540 NPCRMVRPVRNLSYGRNE-----WIGTLEQIFMNVATLES------EVVPGVTTHQELFP 588
Query: 635 TGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVR 694
+LSVVANL P+SDHNQSPRNMYQCQM KQTMGF V K R+D KLYHL TPQ+P+VR
Sbjct: 589 HSILSVVANLIPFSDHNQSPRNMYQCQMGKQTMGFPVYNYKDRSDNKLYHLHTPQSPLVR 648
Query: 695 TNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSD 754
+ Y YG+D YP GTN+IVAV++Y+GYDMEDAMI+NKSS RG +G + + E+IDLS
Sbjct: 649 PSMYDYYGMDSYPVGTNSIVAVISYSGYDMEDAMIVNKSSWQRGFAYGSVIKAESIDLSL 708
Query: 755 DGNKVDRGQKL-FRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSR 813
++ G L F ++ +D+DGLP+VG ++ PG+P+ S + T T
Sbjct: 709 KASRA--GDNLVFGIKPGDPNIGEKLDADGLPFVGSILQPGDPFYSFMNLNTGETFTVYY 766
Query: 814 KGSESVFVDYVAV---DMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPD 870
E VD V + D K +K I R RNP IGDKF+SRHGQKG+ SQLWP
Sbjct: 767 PSKEVGIVDNVRLCSNDRGTGKF--KKVCITVRVPRNPTIGDKFASRHGQKGILSQLWPV 824
Query: 871 IDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
DMPF+ GM PD++ NPH FPSRMTI ML+ES+A K
Sbjct: 825 EDMPFTE-NGMVPDILFNPHGFPSRMTIGMLIESMAGK 861
>gi|344248836|gb|EGW04940.1| DNA-directed RNA polymerase I subunit RPA2 [Cricetulus griseus]
Length = 996
Score = 656 bits (1692), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/840 (42%), Positives = 500/840 (59%), Gaps = 51/840 (6%)
Query: 77 MLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFR 136
M+K++ C+L Q L+ EEA EMGGYFI+NG+E+V R +I+P++N+P++M+R ++
Sbjct: 1 MVKSKLCNLYNLPPQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWK 60
Query: 137 DRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDT 196
R GYT V + CVR++ S+V + L+Y+ NG+V L F + + + LP+G VLKALV
Sbjct: 61 SRGLGYTHFGVSMHCVREEHSAVNMNLHYVENGTVMLNFIYRKELFFLPLGFVLKALVSF 120
Query: 197 NDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQ 256
+D +IF L KG V +L V + +T+ Q L ++GE F+
Sbjct: 121 SDYQIFQELI----------KGKEEDSFFKNSVSQMLRTVMEEGCSTQKQVLNYLGERFR 170
Query: 257 PVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
+ + A+ + + I +HL + +KF LL M +KLF+L + DNPDSL
Sbjct: 171 VKLSLPEWYPNEEAAKFLFNECICIHLKSDTEKFYLLCLMTRKLFALARGECMEDNPDSL 230
Query: 317 QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
NQE+L PG L ++LKEK+E+WL K + + + NL I +
Sbjct: 231 VNQEVLTPGQLFLMFLKEKMENWLASIKIALDKRAQKTNVSINNENLLKIFSM-----GT 285
Query: 377 QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
++ E +L TG L ++TGL Q +G V A++LNF+R++S FR VHRGA FA +RTT
Sbjct: 286 ELTRPFEYLLATGNLRSKTGLGFLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTT 345
Query: 437 SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
+VR+LLPESWGFLCPVHTPDG PCGLLNH+T+ C V + + S+ +L
Sbjct: 346 TVRRLLPESWGFLCPVHTPDGAPCGLLNHLTAICEVVTKF----------VYTASVPALL 395
Query: 497 IGVGMIPSLPKLVKSGPPAVLS----VLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVI 552
G+G+ P V + P S VLLDG +VG + V LRR KV I
Sbjct: 396 CGLGVTP-----VDATPCRPYSDCYPVLLDGVMVGWVDKELAPDVADTLRRFKVLREKRI 450
Query: 553 PDDLEVGYVPLSLGGA-YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEI 611
P +EV VP++ + YPGL+LFT+P + VRPV+N+ L EE LIG EQ+FM +
Sbjct: 451 PPWMEVALVPMTGKPSLYPGLFLFTTPCRLVRPVQNLELGKEE-----LIGTMEQLFMNV 505
Query: 612 RCPDGGDGGRRNAFP--ATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGF 669
+ F +TH+E+ P +LSV+AN P+SDHNQSPRNMYQCQM KQTMGF
Sbjct: 506 AIFED------EVFSGISTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGF 559
Query: 670 SVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMI 729
+ + R+D KLY LQTPQ+P+VR Y Y +D YP GTNAIVAV++YTGYDMEDAMI
Sbjct: 560 PLLTFQDRSDNKLYRLQTPQSPLVRPCMYDYYSMDNYPIGTNAIVAVISYTGYDMEDAMI 619
Query: 730 LNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQ 789
+NK+S +RG HG +Y++E IDLS+ + + + D + + +D DGLP++G
Sbjct: 620 VNKASWERGFAHGSVYKSEFIDLSEKFKQGNDNLVFGIKPGDPRVMQK-LDDDGLPFIGA 678
Query: 790 MIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHTRNP 848
+ G+PY S + T K E+ VD + V ++ + K I R RNP
Sbjct: 679 KLQFGDPYYSYLNLNTGEGFVVYYKSKENCIVDNIKVCSNDTGSGKFKCICITIRVPRNP 738
Query: 849 IIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
IGDKF+SRHGQKG+ S+LWP DMPF+ +GM PD++ NPH FPSRMTI ML+ES+A K
Sbjct: 739 TIGDKFASRHGQKGILSRLWPAEDMPFTE-SGMVPDILFNPHGFPSRMTIGMLIESMAGK 797
>gi|326915056|ref|XP_003203837.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase I
subunit RPA2-like [Meleagris gallopavo]
Length = 1048
Score = 649 bits (1675), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/881 (40%), Positives = 518/881 (58%), Gaps = 55/881 (6%)
Query: 37 HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
CR + +Y G+L D+ + G P + G P+M+K++ C+L Q+L+
Sbjct: 15 ECRGXRSTYRGRLTVDISWSL--NGIPQGSIKQPVGYIPIMVKSKLCNLYNLSPQELIQH 72
Query: 97 KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQ 156
EE EMGGYFI+NGLE+V R +I+P++N+P++M R +++R G+T+ VV+ CV+ +
Sbjct: 73 HEEEEEMGGYFIINGLEKVIRMLIMPRRNFPLAMTRHKWKNRGPGFTEYGVVLHCVKDEH 132
Query: 157 SSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKE 216
S++ + L+YL NG V + F Q + + LP+G LKALV+ D +IF L
Sbjct: 133 SAINMNLHYLENGCVMMNFIFQKELFFLPLGFALKALVNFTDYQIFEELV---------- 182
Query: 217 KGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIR 276
K V +L V + T+ L+++G+ F+ ++ + S A+ +
Sbjct: 183 KDKKNDTFYVNCVTEMLRAVAEAGCYTQQNVLEYLGKSFRVKLNLPEWYSNEQAADFIFN 242
Query: 277 DYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKL 336
I +HL D +KF LL M +KL++ + DNPDSL NQE+L G L ++LKE+L
Sbjct: 243 KCICIHLTDRTEKFYLLCMMTRKLYAFAKGECMEDNPDSLMNQEVLTAGQLFLMFLKERL 302
Query: 337 EDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTG 396
E+WL+ K +++ E K D N+ + + + + S E +L TG L ++TG
Sbjct: 303 ENWLQSVKFILEKRTE----KADI-NINTDSLMKAFSLTTDVTKSFEYLLATGNLRSKTG 357
Query: 397 LDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPD 456
L + Q +G V ++LNF+R++S FR +HRG++FA +RTT+VRKLLPESWGFLCPV TPD
Sbjct: 358 LGMLQDSGLCVVGDKLNFVRYLSHFRCIHRGSAFAQMRTTTVRKLLPESWGFLCPVDTPD 417
Query: 457 GEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPA- 515
GEPCGL+NHMT+ C + + T + +L +G++P S P A
Sbjct: 418 GEPCGLMNHMTAVCEIVTEMVPV----------TDLPPLLCALGVVPI--DATPSKPYAE 465
Query: 516 VLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGA-YPGLYL 574
V+LDG VVG + +V LRR K++ P EV +P++ + YPGL++
Sbjct: 466 CYRVVLDGAVVGWVEWDLAPQVAEALRRFKITQEKRFPARAEVVLIPMTGKPSLYPGLFI 525
Query: 575 FTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPA--THEEI 632
FT+P + VRPV+N+ +E IG EQVFM + + + P TH+E+
Sbjct: 526 FTTPCRMVRPVKNLLYGRKE-----WIGTLEQVFMNVATMES------DVVPGVTTHQEL 574
Query: 633 HPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPI 692
P +LSVVANL P+SDHNQSPRNMYQCQM KQTMGF V K R+D KLY L TPQ+P+
Sbjct: 575 FPHSILSVVANLIPFSDHNQSPRNMYQCQMGKQTMGFPVYNYKDRSDNKLYLLHTPQSPL 634
Query: 693 VRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDL 752
VR Y YG+D YP GTN++VAV++Y+GYDMEDAMI+NKSS +RG +G + + E+IDL
Sbjct: 635 VRPRMYDYYGMDSYPVGTNSVVAVISYSGYDMEDAMIVNKSSWERGFAYGSVIKMESIDL 694
Query: 753 SDDGNKVDRG--QKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRT 810
S K RG +F ++ +D+DGLP+VG ++ PG+P+ S + T T
Sbjct: 695 SL---KASRGGDNLVFGIRPGDPNIKEKLDADGLPFVGSILQPGDPFYSYMNLNTGETFT 751
Query: 811 NSRKGSESVFVDYVAV---DMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQL 867
+ E VD + + D K +KA I R RNP +GDKF+SRHGQKG+ SQL
Sbjct: 752 VYYQNKEVGIVDNIKLCSNDRGTGKF--KKACITVRVPRNPTVGDKFASRHGQKGILSQL 809
Query: 868 WPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
WP DMPF+ GM PD++ NPH FPSRMTI ML+ES+A K
Sbjct: 810 WPVEDMPFTE-NGMVPDILFNPHGFPSRMTIGMLIESMAGK 849
>gi|443686693|gb|ELT89887.1| hypothetical protein CAPTEDRAFT_116144, partial [Capitella teleta]
Length = 1114
Score = 649 bits (1674), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 379/958 (39%), Positives = 553/958 (57%), Gaps = 111/958 (11%)
Query: 12 LRELVRHHIESFDYMLDEGLSEMFD----------------------------------- 36
L++L + HI+SF+Y+L EGL+
Sbjct: 1 LQDLTKPHIDSFNYVLKEGLNTAVKRIEPLEFALPSGQRISLSIQNASILNPMVPQSNIY 60
Query: 37 ---------HCRQAKISYTGKLMADVEFQYLDAG--SPVVRERFNFGQFPVMLKTRRCHL 85
CR+ I+Y GKL ++ + +D PV R G P+M+K+ C++
Sbjct: 61 ATTLRVFPAECRERGITYKGKLTLELNWS-VDGRKFGPVERA---IGDVPIMVKSNACNI 116
Query: 86 QGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDK 145
+ +LV EE EMGGYFI+NG E+V R +I+P++NYPM++ R S++ R YT+
Sbjct: 117 VKMNPAELVQHGEEIQEMGGYFIVNGNEKVLRMLIMPRRNYPMALSRGSWKSRGPQYTEF 176
Query: 146 AVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHL 205
V +R V DQ+S L L+YL +G+ L F L+ +++ +P+ ++L+ALVD D I++ L
Sbjct: 177 GVQMRTVADDQTSTNLVLHYLNDGNAMLCFVLERQQFFVPLAVMLRALVDQPDHFIYSEL 236
Query: 206 TCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSE 265
++ KG + S +L ++Q+ L+TR + LQ++G+ F+ +
Sbjct: 237 VKGREDN-SYYKGCIAS---------MLRQMQEEGLSTRAKTLQYLGKTFRVKLGLPDWY 286
Query: 266 SYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPG 325
+ V E +IR I +HL DN DKFN L+FM QKL++L H +++ D+ QE L+ G
Sbjct: 287 TDLQVGEFLIRSCICIHLKDNVDKFNTLVFMTQKLYALTKHGCAAESADNPMFQEALVAG 346
Query: 326 HLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFF-NLANIKKVMEKNPSKQIGTSIET 384
HL + LK++L+ WL+ K +I ++ + GK D N + + M ++ + ++E
Sbjct: 347 HLYLMVLKDRLKTWLQSLKSVILKKV-SMGKGVDMLTNPTSFCECMRM--TQDVTKAMEF 403
Query: 385 MLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPE 444
+L TG LAT++ L L Q G V A++LNF R+IS FR +HRGA F+ +RTT+VR+LLPE
Sbjct: 404 LLATGNLATKSTLGLMQMKGLAVLADKLNFYRYISHFRCIHRGAFFSEMRTTAVRRLLPE 463
Query: 445 SWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPS 504
++GF+CPVHTPDG PCGLLNH+T+ C+V+ S + + + ++L +GM+P
Sbjct: 464 AYGFICPVHTPDGSPCGLLNHLTAECQVSC--------APPSNLSSQLPQLLSSLGMLPM 515
Query: 505 LPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAAS--VIPDDLEVGYVP 562
L + +VLLDG+V+G I + V LR LKV+ + + LE+G V
Sbjct: 516 DAPLTAAS--EYYNVLLDGKVLGRIHQDSVSNVADRLRALKVTGGNPPQVSPLLEIGLVM 573
Query: 563 LS-LGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGR 621
+ YPGL+LF+S +F+RPV N+ E++G FEQV+M+I C +
Sbjct: 574 RTPQASQYPGLFLFSSCARFIRPVTNLL-----HDKREMVGSFEQVYMDI-CVTASE--- 624
Query: 622 RNAFPA--THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRAD 679
A P TH+++ T MLS +AN TP+SD NQSPRNMYQCQM KQTMG + AL RAD
Sbjct: 625 --AIPGVTTHQDLCETSMLSTLANFTPFSDFNQSPRNMYQCQMGKQTMGTPLHALVHRAD 682
Query: 680 QKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGM 739
KLY +QTPQ+P+VR Y Y +DEYP GTNAIVAV++YTGYDMEDAMI+NKSS +RG
Sbjct: 683 NKLYRIQTPQSPMVRPKVYDDYDVDEYPNGTNAIVAVISYTGYDMEDAMIINKSSYERGF 742
Query: 740 CHGQIYQTETIDL------SDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHP 793
HG +Y++E L + V G L ++ +D+DGLP++G+ +
Sbjct: 743 AHGSVYKSEVFILLLQFFTLSCHSGVKPGDTLAEQH---------LDADGLPFIGRYLTS 793
Query: 794 GEPYCSIYDKTTNSWRTNSRKGSESVFVDYV---AVDMKNSKNLPQKANIRFRHTRNPII 850
G PY S + T R K E +V + A D+ N++ QK I R RNPII
Sbjct: 794 GSPYYSYINVQTGESRVVKYKYDEPAYVQQIKLLAHDLSNTE--LQKVCIVLRIRRNPII 851
Query: 851 GDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
GDKFSSRHGQKG+CSQ WP +MPF+ G+ PD++ NPH FPSRMTI M++ES+A K
Sbjct: 852 GDKFSSRHGQKGICSQKWPVENMPFTE-GGITPDILFNPHGFPSRMTIGMMIESMAGK 908
>gi|431913096|gb|ELK14846.1| DNA-directed RNA polymerase I subunit RPA2 [Pteropus alecto]
Length = 1105
Score = 647 bits (1668), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/948 (39%), Positives = 519/948 (54%), Gaps = 127/948 (13%)
Query: 12 LRELVRHHIESFDYMLDEGLSEMFD----------------------------------- 36
L++L + H+ESF+Y + EGL
Sbjct: 35 LQKLTQAHVESFNYAVREGLGHAVQAIPPFEFAFKDERISLTIVDAVISPPTVPKGSICK 94
Query: 37 -------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGAD 89
CR + +Y GKL AD+ + V+++ G P+M+K+ C+L G
Sbjct: 95 ELSVYPAECRGRRSTYRGKLTADISWAVNGVSKGVIKQ--FLGYVPIMVKSTLCNLHGLP 152
Query: 90 SQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVI 149
+ L+ EE EMGGYFI+NG+E+V R +I+P++N+P++M+R ++ R GYT V +
Sbjct: 153 PKALIEHHEEPEEMGGYFIINGIEKVIRLLIMPRRNFPIAMIRPKWKARGPGYTQYGVSM 212
Query: 150 RCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY 209
CVR + S+ + L+YL NG+V L F + + + LP+G LK L
Sbjct: 213 HCVRGEHSATNMNLHYLENGTVMLNFIYRKELFFLPLGFALKML---------------- 256
Query: 210 DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQ---PVIDGLQSES 266
RV V D +T+ Q L ++GE F+ + D SE
Sbjct: 257 ------------------RV------VMDEGCSTQKQVLGYLGERFRVKLSLPDWYPSEQ 292
Query: 267 YYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGH 326
AE + I +HL N +KF +L FM +KLF+L + +NPDSL NQE+L PG
Sbjct: 293 ---AAEFLFNQCICIHLKSNTEKFYVLCFMTRKLFALARGECMEENPDSLVNQEVLTPGQ 349
Query: 327 LITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETML 386
L ++LKEK+E WL K I + + N ++ KV N + E +L
Sbjct: 350 LFLMFLKEKMEAWLVSIKLAIDKKAQKTNVSL---NTESLMKVF--NLGTDLTKPFEYLL 404
Query: 387 KTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESW 446
TG L ++TGL Q +G V A++LNF+R++S FR VHRGA FA +RTT+VR+LLPESW
Sbjct: 405 ATGNLRSKTGLGFLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVRRLLPESW 464
Query: 447 GFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLP 506
GFLCPVHTPDGEPCGL+NH+T+ C V + + SI +L +G+ P
Sbjct: 465 GFLCPVHTPDGEPCGLMNHLTAVCEVVTQF----------VYTASIPALLCSLGVTP--- 511
Query: 507 KLVKSGPPAVLS----VLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVP 562
V P + + VLLDG +VG + V A LRR KV IP +EV +P
Sbjct: 512 --VDGAPHRLYTECYPVLLDGIMVGWVDKDLAPSVAASLRRFKVLREKRIPPWMEVVLIP 569
Query: 563 LSLGGA-YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGR 621
++ + YPGL+LFT+P + VRPV+N+ L EE L+G EQVF+ I +
Sbjct: 570 MTGKPSLYPGLFLFTNPCRLVRPVQNVELGHEE-----LVGTMEQVFLNIAVFEA----E 620
Query: 622 RNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQK 681
TH+E+ P +LSV+AN P+SDHNQSPRNMYQCQM KQTMGF + + R+D K
Sbjct: 621 VVVGVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYRDRSDNK 680
Query: 682 LYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCH 741
LY LQTPQ+P+VR Y Y +D YP GTNAIVAV++YTGYDMEDAM++NK+S +RG H
Sbjct: 681 LYRLQTPQSPLVRPRMYDHYDMDNYPIGTNAIVAVISYTGYDMEDAMVVNKASWERGFAH 740
Query: 742 GQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIY 801
G +Y++E IDL++ + D + D ++ +DSDGLP+VG + G+PY S
Sbjct: 741 GSVYKSEFIDLTEKVKQGDDSLVFGVKPGDPRTAQK-LDSDGLPFVGAWLRYGDPYFSYV 799
Query: 802 DKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHTRNPIIGDKFSSRHGQ 860
+ ES VD + V ++ K I R RNP IGDKF+SRHGQ
Sbjct: 800 SLHSGDGAVVLYTSKESCIVDNIKVCSNDAGTGKFKCVCITVRVPRNPTIGDKFASRHGQ 859
Query: 861 KGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
KG+ S+LWP DMPF+ +GM PD++ NPH FPSRMTI ML+ES+A K
Sbjct: 860 KGILSRLWPAEDMPFTE-SGMVPDILFNPHGFPSRMTIGMLIESMAGK 906
>gi|302411196|ref|XP_003003431.1| DNA-directed RNA polymerase I subunit RPA2 [Verticillium albo-atrum
VaMs.102]
gi|261357336|gb|EEY19764.1| DNA-directed RNA polymerase I subunit RPA2 [Verticillium albo-atrum
VaMs.102]
Length = 1208
Score = 647 bits (1668), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/901 (40%), Positives = 524/901 (58%), Gaps = 89/901 (9%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR+ ++Y GKL A EF+ D + + GQ P+M+K+ RCHL+G LV K
Sbjct: 118 CRERHVTYRGKLSATFEFRINDGDAKEFTR--DLGQMPIMVKSNRCHLEGNSPDLLVKRK 175
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
EE+ E+GGYFI+NG+E++ R + + ++N+PM + R GY+ +
Sbjct: 176 EESEELGGYFIVNGIEKIIRLLQVNRRNFPMPSTDPASPTRGAGYSPHGI---------- 225
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
+ +LG K + V ++LKALV+TND EIF L K
Sbjct: 226 ----------HSFAQLG---PTKPFSTNVMMILKALVETNDREIFEGLIGSKGSK----- 267
Query: 218 GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRD 277
+ + +++RV+++L L T+ + ++GE F+ V+ + S+Y V ++
Sbjct: 268 -SAQNTFLTDRVELLLRTYTSYGLYTKTETRAYLGEKFRVVLGVPDTMSHYDVGTEFLKR 326
Query: 278 YIFVHLND-------NNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITI 330
+ VHL + ++DKF +L+FM++KL++LV DNPD++QNQE+LL G L +
Sbjct: 327 IVLVHLGNVDVTEQQDSDKFKMLLFMIRKLYALVAGECSVDNPDAIQNQEVLLGGFLYGM 386
Query: 331 YLKEKLEDWLRKGKKLIQDEIENNGKKF--DFFNLANIKK----VMEKNPSKQIGTSIET 384
LKE+L+++L ++ + + +KF F + +K + + ++ +G+ +E
Sbjct: 387 ILKERLDEFLSTA---VRASLRDYHRKFPAKTFTSQDFQKDFPATIFRLANESLGSGLEY 443
Query: 385 MLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPE 444
+ TG L + +GLDLQQ AGYTV AE+LNFLRFIS FR +HRGA FA L+TT+VRKLLPE
Sbjct: 444 FMSTGNLTSPSGLDLQQTAGYTVVAEKLNFLRFISHFRMIHRGAFFAELKTTTVRKLLPE 503
Query: 445 SWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIG-VGMIP 503
SWGFLCPVHTPDG PCGLLNH+ CR+ + + TS L L+ +G +
Sbjct: 504 SWGFLCPVHTPDGSPCGLLNHLAHKCRIMT-----------DPVDTSTLPALVAEMGAVS 552
Query: 504 SLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPL 563
+ + + V+LDGRV+G E ++ LR KV +P +LE+GYVP
Sbjct: 553 T----SSAATDESVVVMLDGRVLGFSTPQESIRIADTLRYWKVEGTHGVPLELEIGYVPP 608
Query: 564 SLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRN 623
S GG+YPGLY+ + + VRPV+ + L Q + +GP EQ +M I +
Sbjct: 609 SNGGSYPGLYIASKAARMVRPVKYLPL-----QKQDYVGPHEQPYMSIAVVEK----EII 659
Query: 624 AFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLY 683
+ +TH E PT MLS++AN+TP+SD NQSPRNMYQCQM KQTMG AL R D KLY
Sbjct: 660 SGESTHVEFDPTNMLSILANMTPFSDFNQSPRNMYQCQMGKQTMGTPATALAHRTDNKLY 719
Query: 684 HLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQ 743
+QT QTP+VR+ + +YG D +P G N++VAV++YTGYDM+DAMILNKSS +RG HG
Sbjct: 720 RIQTGQTPVVRSPLHNEYGFDNFPNGMNSVVAVISYTGYDMDDAMILNKSSHERGFGHGT 779
Query: 744 IYQTETIDLSDDGNKVDRGQ--KLFRRNKDA---KSLHSVIDSDGLPYVGQMIHPGEPYC 798
IY+ + + L DD Q KLF ++ S++D DGLPYVG+M+ G+ C
Sbjct: 780 IYKVKKVSLKDDSRSRTAKQVTKLFGFAPNSFVKGEYRSMLDEDGLPYVGRMVQEGDILC 839
Query: 799 SIYDKTT--NSWRTN--------SRKGSESVFVDYVAVDMKNSKNLP-QKANIRFRHTRN 847
+ + T N TN K SE F++ V + + N P Q +I+ R R
Sbjct: 840 AYHTVTADFNGNLTNLDGQTQYEKYKESEQAFIEEVRIIGSENGNEPAQTVSIKLRVPRA 899
Query: 848 PIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAA 907
P+IGDKFSSRHGQKGV SQ WP DMPF+ +GM+PD IINPHAFPSRMTI M +ES+A
Sbjct: 900 PVIGDKFSSRHGQKGVASQKWPATDMPFT-ESGMQPDTIINPHAFPSRMTIGMFVESLAG 958
Query: 908 K 908
K
Sbjct: 959 K 959
>gi|326517304|dbj|BAK00019.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 1194
Score = 646 bits (1666), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 370/955 (38%), Positives = 542/955 (56%), Gaps = 109/955 (11%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR++ SY+G +E + G P+M+ + +C+L+ +KL ++
Sbjct: 54 CRESATSYSGSFKGSIEVTIEGKVNAQYVIPVKLGDLPIMVMSSKCNLRNLAPKKLAEME 113
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
EE+ E+GGYFI+NG+ERV R + + ++NY +++ RS+FR+R Y+DK V ++C +KD +
Sbjct: 114 EESNEVGGYFIVNGIERVIRLLQIQRRNYAVAIERSTFRNRGNNYSDKGVAMKCTKKDLT 173
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
S T+ L+YL NG L F L+ +E+LLPV +V K+L++ +D E+F+ +
Sbjct: 174 SATITLHYLNNGCATLRFVLRKQEFLLPVILVAKSLMNISDKELFDRIV----------G 223
Query: 218 GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRD 277
+ + ++ R++++L + + +L + +CL ++G F+ ++ S +I+
Sbjct: 224 ENLDNTFLTTRIELLLRDYKQYNLHSMNECLAYLGSLFRNLLGVTSKYSDLETGILLIKR 283
Query: 278 YIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLE 337
+F+H+ K + LIFM++KLFS V ++DN D+L N ++LLPGHL+ + +KEKLE
Sbjct: 284 NLFIHVESFGGKLDCLIFMIRKLFSFVQGKCINDNADALMNHDLLLPGHLLNMIIKEKLE 343
Query: 338 DWLRKGKKLIQDEIENNGKKFDFFNLANIK--KVMEKNPSKQIGTSIETMLKTGRLATQT 395
+ L K L+ + KF+ L N K + + IG I T L +G + + +
Sbjct: 344 ESLTASKGLVIRDSRVMKGKFEAECLKNNKYFQRLCDRVCGNIGAKIATFLSSGNVVSSS 403
Query: 396 GLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTP 455
GLDL Q++G+T+ AERLN RF S F++VHRG F ++TT+VRKLLPESWGFLCPVHTP
Sbjct: 404 GLDLMQKSGFTIIAERLNLFRFFSHFQSVHRGQFFTTMKTTTVRKLLPESWGFLCPVHTP 463
Query: 456 DGEPCGLLNHMTSTCRVASYYDSRG---------------NIRDFSKMRTSILRVLIGVG 500
DG PCGLLNH+ + SY S+ N+ D ++ + VL+ +G
Sbjct: 464 DGAPCGLLNHLAKDAVILSYPPSKKPPITTTHPVAQPSAVNL-DLLCSKSYLQEVLVSLG 522
Query: 501 MIPSLPKLVKSGPPAV------LSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPD 554
M + L A+ LSVL+DG G + + VVA LRR+K A
Sbjct: 523 M--QISGLGNYDGQAIFNERESLSVLIDGVFAGFVQKEKAPSVVAQLRRMKSLAKYGRRA 580
Query: 555 DL--------EVGYVP---LSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGP 603
DL E+G++P G YPG+Y+FT + RPV N+ ++ +E IGP
Sbjct: 581 DLPYILEPTTEIGFIPKLEFDNLGPYPGIYIFTQHGRMSRPVLNL-----HTKEVEWIGP 635
Query: 604 FEQVFMEIRCPDGGDGGRRNAFPA---------------THEEIHPTGMLSVVANLTPYS 648
EQVFMEI C + + FP+ +H E+ PT MLS +A+LTPYS
Sbjct: 636 MEQVFMEIACV------KEDIFPSPFKTASSTSVEDEGTSHIELSPTVMLSQIASLTPYS 689
Query: 649 DHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPT 708
D+NQSPRNMYQCQM KQTMG A KFRAD KLY + Q PIV+T T+ +Y +DEYP
Sbjct: 690 DYNQSPRNMYQCQMGKQTMGTPTHAFKFRADNKLYRILNVQAPIVQTKTHGEYFMDEYPQ 749
Query: 709 GTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVD-------- 760
G NA+VAV++YTGYDMEDAMI+NK++ +RG HG +Y+T +DL ++ K
Sbjct: 750 GCNAVVAVISYTGYDMEDAMIINKAAYERGFGHGCVYKTMFVDLEEEEVKAANLTSRPSF 809
Query: 761 -----RGQKLFRRNKDAKSLHSVI---------------DSDGLPYVGQMIHPGEPYCSI 800
+G + SL+S + D DGLP G ++H GEP +
Sbjct: 810 KFSNFKGVAMTNNQTSKISLNSPVKHDAIFGGDLVCESLDYDGLPAEGNLVHYGEPIVCL 869
Query: 801 YDKTTNSWRTNSRKGSESVFVDYVAV-------DMKNSKNLPQKANIRFRHTRNPIIGDK 853
D +T + + S K E ++D V V + K ++ ++ I R+ RNPIIGDK
Sbjct: 870 IDVSTGNHKIISHKDHEPAYIDAVRVIGLGSSTNTKVERSNFRRVAITLRYRRNPIIGDK 929
Query: 854 FSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
FSSRHGQKG S LWP +MPFS +GM PD++INPHAFPSRMTI ML+ES+A K
Sbjct: 930 FSSRHGQKGTLSVLWPQENMPFSE-SGMSPDVLINPHAFPSRMTIGMLIESMAGK 983
>gi|340515986|gb|EGR46237.1| predicted protein [Trichoderma reesei QM6a]
Length = 1206
Score = 645 bits (1664), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/875 (42%), Positives = 523/875 (59%), Gaps = 62/875 (7%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR+ +Y GKL A F+Y G + GQ P+M+K+ RCHL+G LVS K
Sbjct: 118 CRERHATYRGKLSA--TFEYSINGGDAIEFTRELGQVPIMIKSNRCHLEGNSPALLVSRK 175
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
EE+ E+GGYFI+NG E++ R + + K+N+PM++ R SF +R GYT +++R VR D++
Sbjct: 176 EESEELGGYFIVNGNEKIIRLLQVNKRNFPMAINRPSFTNRGAGYTTYGIILRSVRPDET 235
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
S T L+YL +G+V F + EYL+PV ++LKALV+TND EIF L K
Sbjct: 236 SQTNVLHYLKDGNVTFRFSWRKNEYLIPVIMILKALVETNDREIFEGLIGPMGSK----- 290
Query: 218 GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRD 277
A + +++RV+++L + L ++ + ++G+ F+ V+ ++ S Y V +R
Sbjct: 291 -AASNTFLTDRVELLLRTYKAYRLYSKSETRAYLGQKFRVVLGVPETMSDYEVGTEFLRR 349
Query: 278 YIFVHLNDNN-------DKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITI 330
+ VHL + N DKF+L++FM++KL++L DNPD++QNQEILL G L
Sbjct: 350 IVCVHLGNVNVTEKQDLDKFHLVLFMIRKLYALAAGECAVDNPDAIQNQEILLGGFLYAQ 409
Query: 331 YLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKV---MEKNPSKQIGTSIETMLK 387
LKE+L+++L + + +F + K+ + + ++ I +E L
Sbjct: 410 ILKERLDEFLGTSVRAALRDYLRRHPAVNFTSEEFRKEFPGGIFRKSNENIANGLEYFLS 469
Query: 388 TGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWG 447
TG L + +GLDLQQ AG+TV AE+LNFLRFIS FR VHRGA FA L+TT+VRKLLPESWG
Sbjct: 470 TGNLVSASGLDLQQTAGFTVVAEKLNFLRFISHFRMVHRGAFFAQLKTTAVRKLLPESWG 529
Query: 448 FLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPK 507
F+CPVHTPDG PCGLLNH C+V + Y D S SI ++ +G + +
Sbjct: 530 FMCPVHTPDGSPCGLLNHFAHKCKVMTDY------VDVS----SIPALVAELGAV----E 575
Query: 508 LVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGG 567
+ + V+LDG+++G E ++ LR KV + +P +LEVGYVP S GG
Sbjct: 576 TSSASTDESVVVMLDGKILGWCTPKESLRIGDCLRYWKVEGSHNVPLELEVGYVPPSHGG 635
Query: 568 AYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRNAFP 626
+YPGLYL ++P + VRPV+ + L E+ +GP EQ +M I P + G
Sbjct: 636 SYPGLYLTSTPSRMVRPVKYLPLQKED-----YVGPHEQPYMSIAVVPQEIESGV----- 685
Query: 627 ATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQ 686
+TH E PT MLS++AN+TP+SD NQSPRNMYQCQM KQTMG A++ R D K Y +Q
Sbjct: 686 STHVEFDPTNMLSILANMTPFSDFNQSPRNMYQCQMGKQTMGTPGTAIRHRTDNKSYRIQ 745
Query: 687 TPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQ 746
T QTPIVR + YG D +P G NA+VAV++YTGYDM+DAMI+NKS+ +RG HG +Y+
Sbjct: 746 TGQTPIVRAPLHNTYGFDNFPNGMNAVVAVISYTGYDMDDAMIINKSAHERGFGHGTVYK 805
Query: 747 TETIDLSDDG--NKVDRGQKLFR---RNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIY 801
T+ I L DD K+F + + S +++D DGLP+VG+M+ G+ C+ Y
Sbjct: 806 TKKITLKDDSRTRAAKSVVKMFGFAPHSFVSASHQAMLDDDGLPHVGRMVQEGDVLCA-Y 864
Query: 802 DKTTNSWRTN-----------SRKGSESVFVDYVAVDMKNSKNLP-QKANIRFRHTRNPI 849
T + N K SE F++ V + S + P Q +I+ R R+P+
Sbjct: 865 HTVTPDYNGNLVNLDGITHYEKYKDSEIGFIEEVRLIGAESGSEPLQTISIKIRIPRSPV 924
Query: 850 IGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPD 884
IGDKFSSRHGQKGV SQ WP +DMPFS TG++PD
Sbjct: 925 IGDKFSSRHGQKGVLSQKWPAVDMPFS-ETGIQPD 958
>gi|115398832|ref|XP_001215005.1| DNA-directed RNA polymerase I polypeptide 2 [Aspergillus terreus
NIH2624]
gi|114191888|gb|EAU33588.1| DNA-directed RNA polymerase I polypeptide 2 [Aspergillus terreus
NIH2624]
Length = 1205
Score = 645 bits (1663), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/860 (42%), Positives = 520/860 (60%), Gaps = 71/860 (8%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPV--VRERFNFGQFPVMLKTRRCHLQGADSQKLVS 95
CR+ +Y GKL A +E+Q ++ G V VRE GQ P+ML+T RCHL+ A ++LV
Sbjct: 128 CRERHATYRGKLRARLEYQ-VNNGDWVESVRE---LGQVPIMLRTNRCHLEKATPEELVQ 183
Query: 96 LKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKD 155
KEE+ E+GGYFI+NG E++ R +++ K+N+PM+++R SF R YT + IR VR D
Sbjct: 184 HKEESEELGGYFIVNGNEKLIRMLVVGKRNFPMAIIRGSFVKRGHTYTKYGIQIRSVRPD 243
Query: 156 QSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKK 215
Q+S T L+YL +G+V F + EYL+PV ++LKALV+TND EIF L +
Sbjct: 244 QTSQTNVLHYLSDGNVTFRFSWRKNEYLIPVMMILKALVETNDREIFEGLVGNASSE--- 300
Query: 216 EKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVI 275
+ + V++RV+++L + ++ TR C ++GE F+PV+ S +
Sbjct: 301 ---GINNTFVTDRVELLLRTYKGYNVHTRSSCRAYLGEKFKPVLGVPSDMSNEDAGTEFL 357
Query: 276 RDYIFVHLNDNN-------DKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLI 328
R + HL + N DKF +++FM++KL++LV DNPD++ NQEILL G L
Sbjct: 358 RKVVLPHLGNQNVTETQDYDKFKMIMFMIRKLYALVAGDCAPDNPDAVSNQEILLGGFLY 417
Query: 329 TIYLKEKLEDWLRKGKKLIQD-EIENNGKKFD--FFNLANIKKVMEKNPSKQIGTSIETM 385
+ LKE+LE+W+R +++D NNG KF F + K+++++ ++ +G+++E
Sbjct: 418 GMILKERLEEWVRSFGPILRDWSNRNNGAKFTDPAFERDFLSKIVKRS-NENLGSALEYF 476
Query: 386 LKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPES 445
L TG L + TGLDLQQ +GYTV AE++NF RFIS FR +HRG+ FA L+TT+VRKLLPES
Sbjct: 477 LSTGNLVSPTGLDLQQASGYTVMAEKINFYRFISHFRMIHRGSFFAQLKTTTVRKLLPES 536
Query: 446 WGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSL 505
WGFLCPVHTPDG PCGLLNH+ C +++ D L V +GV S+
Sbjct: 537 WGFLCPVHTPDGAPCGLLNHLAHKCLIST--------SDIDVSHLPKLLVQLGVRSESSV 588
Query: 506 PKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSL 565
L +S P V +DGR+VG + V LR KV +P +LE+GYVP S
Sbjct: 589 -SLDESVP-----VQIDGRIVGYCSPKQARVVADTLRYWKVMEMHNVPKELEIGYVPNSN 642
Query: 566 GGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRNA 624
GG YPG+Y+F+ + RPV+ + L ++ +GPFEQ F+EI C P+ +
Sbjct: 643 GGQYPGIYIFSQAARMFRPVKYLLL-----DKLDYVGPFEQPFLEIACLPE-------DL 690
Query: 625 FP--ATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKL 682
P +TH E PT +LS+VAN+TP+SD+NQSPRNMYQCQM+KQTMG A+ +R D KL
Sbjct: 691 IPGVSTHIEFTPTNILSIVANMTPFSDYNQSPRNMYQCQMSKQTMGTPGTAIDYRTDNKL 750
Query: 683 YHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHG 742
Y LQT QTPIVR Y YG+D +P GTNA+VA+++YTGYDM+DAMI+NKSS +RG HG
Sbjct: 751 YRLQTGQTPIVRPPLYNAYGLDNFPNGTNAVVAIISYTGYDMDDAMIINKSSHERGFGHG 810
Query: 743 QIYQTETIDLSDDGNKVDRGQ----KLFRRNKDAK---SLHSVIDSDGLPYVGQMIHPGE 795
IY+T+ L D ++ R + KLF + + +D DGLP++G + G
Sbjct: 811 TIYKTKIHSLDDKDSRRGRSRREITKLFGFAPGGEIKAEWRNSLDEDGLPHIGARVREGS 870
Query: 796 PYCSI----YDKTTNSWRTN-------SRKGSESVFVDYVAVDMKNSKNLP-QKANIRFR 843
+ YD T+S+ K +E ++D + V + P Q ++++R
Sbjct: 871 LVAAWHTVRYDAATDSYVNVDGITHFIKYKDAEEGYIDSIRVMGAETGVEPCQSISVKYR 930
Query: 844 HTRNPIIGDKFSSRHGQKGV 863
R P+IGDKFSSRHGQKG+
Sbjct: 931 VPRKPVIGDKFSSRHGQKGM 950
>gi|328868020|gb|EGG16401.1| RNA polymerase I [Dictyostelium fasciculatum]
Length = 1010
Score = 644 bits (1662), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/854 (41%), Positives = 518/854 (60%), Gaps = 61/854 (7%)
Query: 77 MLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFR 136
M+++R CHL+G +LVS EEA EMGGYF++NG E++ R ++ K N+P+++ R +
Sbjct: 1 MVRSRLCHLEGLTPDELVSNHEEAMEMGGYFVVNGNEKLIRMLVANKGNHPVALQRKGWT 60
Query: 137 DRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDT 196
R GYT + IR V D++S+T L+YL +G V F + EY LPV ++L+ L DT
Sbjct: 61 SRGPGYTKYGITIRSVLPDRTSMTNALHYLADGQVTYRFLYKRHEYFLPVAMLLRILGDT 120
Query: 197 NDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQ 256
D EI+ H+ +G + +++R++++L E + + T+ + L ++G F+
Sbjct: 121 TDKEIYQHVV----------QGDTENTFLTDRIELMLREQRIDHVNTQAEALDYLGSRFR 170
Query: 257 PVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
+ + +AE +I +YI VHL + DKFNL+ M+QKL+S V S DN D+
Sbjct: 171 HKAFLPDNFTNRQIAEYMINNYILVHLPNWRDKFNLICLMVQKLYSSVQGKSDCDNIDAT 230
Query: 317 QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
E+LL GHL LKE+L+++L +F F + I+K KNP+
Sbjct: 231 SFHEVLLGGHLFCSMLKERLQEYLET-------------VRFHFLHGVEIEKKNGKNPNH 277
Query: 377 Q------------IGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAV 424
+ IG E+ L TG LA+ +GLD+QQ +G+T+ AE+LNFLR+IS FR++
Sbjct: 278 EAILKKSFDRAGAIGPKFESFLATGNLASNSGLDVQQTSGFTIIAEKLNFLRYISHFRSI 337
Query: 425 HRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRD 484
HRGA FA ++T+S+RKL+PES+GFLCPVHTPDG PCGLLNH++S C + R
Sbjct: 338 HRGAFFATMKTSSIRKLMPESFGFLCPVHTPDGAPCGLLNHLSSNCLITK---DPLQERK 394
Query: 485 FSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRL 544
+ ++ + L+ G+ + + + P L V +GR++G+ +++V LR L
Sbjct: 395 VLESNLTLTKFLLSNGV--TSIETTSTFRPGSLPVTFNGRLIGMADEDTCDELVNTLRYL 452
Query: 545 KVSAASVIPDDLEVGYVPLS----LGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIEL 600
+ +P LE+ Y P + +GG +PG+ LF++ +F+RPV N+ +S EL
Sbjct: 453 RSVGHENVPSTLEIAYAPKNRPGIVGGQFPGISLFSTGARFMRPVINV-----KSGKQEL 507
Query: 601 IGPFEQVFMEIRC-PDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQ 659
IGP EQ++M I P+ G TH E+ PT MLSVVANLTP+SD+NQSPRNMYQ
Sbjct: 508 IGPQEQLYMNIAIYPEEVKKG-----ITTHVELSPTAMLSVVANLTPFSDYNQSPRNMYQ 562
Query: 660 CQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAY 719
CQMAKQTMG + + +RAD KL+ +Q PQ PIVRT +KY +++YP G NA++AV++
Sbjct: 563 CQMAKQTMGTPMHSYAYRADNKLFKIQNPQKPIVRTINQSKYHVNDYPHGCNAVIAVISN 622
Query: 720 TGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQ-KLFRRNKDAKSLHSV 778
TGYDMEDAMI+NKSS +RG HG +Y+T DL + + G+ + R + L
Sbjct: 623 TGYDMEDAMIINKSSYERGFGHGSVYKTVFYDLDEGKLRAQTGRTSVSRPDYQTDGLDQY 682
Query: 779 IDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMK-NSKNLPQ- 836
+D DGLP+VG+ + EP + ++ K E +++ V + S N P+
Sbjct: 683 LDVDGLPHVGRYVTGHEPLYTFVNELDGKQVVEMIKSKEEAWIEEVKIIGNLTSMNAPRT 742
Query: 837 --KANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPS 894
K +++R RNP+IGDKF+SRHGQKGV SQLWP+I+MPFS +G++PD+IINP+AFPS
Sbjct: 743 VTKFTVKYRFDRNPVIGDKFASRHGQKGVLSQLWPEINMPFSE-SGLKPDVIINPNAFPS 801
Query: 895 RMTIAMLLESVAAK 908
RMTI ML+E +AAK
Sbjct: 802 RMTIGMLIEIMAAK 815
>gi|302903611|ref|XP_003048895.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256729829|gb|EEU43182.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 1195
Score = 644 bits (1662), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 366/872 (41%), Positives = 528/872 (60%), Gaps = 85/872 (9%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPV--VRERFNFGQFPVMLKTRRCHLQGADSQKLVS 95
CR+ ++Y G+L A +E++ ++ G P+ VRE FGQ P+M+K+ RCHL+G LV
Sbjct: 118 CRERHVTYRGRLSATLEYR-INGGDPIEFVRE---FGQVPIMIKSNRCHLEGNSPALLVE 173
Query: 96 LKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKD 155
KEE+ E+GGYFI+NG+E++ R + L K+N+PM++ R SF++R GYT +++R VR D
Sbjct: 174 RKEESEELGGYFIVNGIEKIIRMLQLNKRNFPMAINRPSFQNRGPGYTPYGIILRAVRPD 233
Query: 156 QSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKK 215
++S T L+YL +G++ F + EYL+PV ++LKALV+TND EIF L
Sbjct: 234 ETSQTNVLHYLNDGNMTFRFSWRKNEYLIPVMMILKALVETNDREIFEGLV--------- 284
Query: 216 EKGAVGS-----PLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAV 270
G VGS +++R++++L + +L ++ + ++GE F+ V+ + S V
Sbjct: 285 --GPVGSKSTENTFLTDRIELLLRTYKSYNLYSKSETRAYLGEKFRVVLGVPDTMSNLDV 342
Query: 271 AETVIRDYIFVHLND-------NNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILL 323
+R + VHL + +N+KF LL+FM++KL++LV DNPD++QNQEILL
Sbjct: 343 GTEFLRRIVLVHLGNVDVTEEQDNEKFKLLLFMIRKLYALVAGECAVDNPDAVQNQEILL 402
Query: 324 PGHLITIYLKEKLEDWLRKG-KKLIQDEIENNGK--------KFDFFNLANIKKVMEKNP 374
G L LKE+L+++L + ++D + N + DF N NI + +N
Sbjct: 403 GGFLYGQILKERLDEFLSVNVRASLRDYLRRNPTVPFTSEDFRKDFPN--NIFRKANEN- 459
Query: 375 SKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLR 434
+G ++E L TG + + +GLDLQQ AG+TV AE+LNFLRFIS FR VHRGA FA L+
Sbjct: 460 ---LGNALEYFLSTGNMQSPSGLDLQQTAGFTVVAEKLNFLRFISHFRMVHRGAFFAQLK 516
Query: 435 TTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILR 494
TT+VRKLLPESWGF+CPVHTPDG PCGLLNH+ C++ + DS D S + + L
Sbjct: 517 TTAVRKLLPESWGFMCPVHTPDGAPCGLLNHLAHKCKIMT--DSV----DVSHI--AALA 568
Query: 495 VLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPD 554
+G+ + S + + V+LDG+++G E ++ R KV +P
Sbjct: 569 AELGIVDVSS------ASTEENVVVMLDGKILGFCTPKESVRIADCFRYWKVEGTHGVPL 622
Query: 555 DLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC- 613
LE+GYVP S GG+YPG+Y+ ++P + VRPV+ + L E+ +GP+EQ +M I
Sbjct: 623 QLEIGYVPPSHGGSYPGIYMTSTPARMVRPVKYLPLQKED-----WVGPYEQPYMSIAVV 677
Query: 614 PDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQA 673
P + G+ +TH E PT MLS++AN+TP+SD NQSPRNMYQCQM KQTMG
Sbjct: 678 PQEVESGK-----STHVEFDPTNMLSILANMTPFSDFNQSPRNMYQCQMGKQTMGTPSTN 732
Query: 674 LKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKS 733
L++R D K Y +QT QTP+VR + YG D +P G NA+VAV++YTGYDM+DAMILNKS
Sbjct: 733 LRYRTDNKSYRIQTGQTPVVRAPLHNTYGFDNFPNGMNAVVAVISYTGYDMDDAMILNKS 792
Query: 734 SVDRGMCHGQIYQTETIDLSDDG-----NKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVG 788
+ +RG HG IY+T+ I L DD V + + + S ++D DGLP+VG
Sbjct: 793 AHERGFGHGTIYKTKKISLKDDSRTKATKSVTKAFGFAPHSYVSASYQGMLDDDGLPHVG 852
Query: 789 QMIHPGEPYCSIYDKTT--NSWRTN--------SRKGSESVFVDYVAVDMKNSKNLP-QK 837
+MI G+ C+ + T N N K E+ FV+ V + + N P Q
Sbjct: 853 RMIQEGDVICAWHTVTPDYNGKLVNLDGITHYEKYKDGETGFVEEVRLIGAETGNEPLQT 912
Query: 838 ANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWP 869
+++FR R+PIIGDKFSSRHGQKGV SQ WP
Sbjct: 913 ISVKFRVPRSPIIGDKFSSRHGQKGVASQKWP 944
>gi|47209534|emb|CAF89806.1| unnamed protein product [Tetraodon nigroviridis]
Length = 1071
Score = 644 bits (1661), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/915 (40%), Positives = 518/915 (56%), Gaps = 122/915 (13%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR + SY GKL+AD+ + ++++ G P+M+K++ C+L+G +L
Sbjct: 36 CRGRRCSYKGKLVADISWSVNGVPRGIIKQ--TLGHLPIMVKSQLCNLRGLTPTQL---- 89
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
EMGGYFI+NG+E+V R +I+ ++NYP++M R ++ R +GYT + +RCV++D +
Sbjct: 90 ----EMGGYFIVNGIEKVIRMLIMQRRNYPVAMSRPKWKSRGQGYTQYGISMRCVKEDHT 145
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
+V + L+YL NG+V L F Q + + LP+G LKALVD D +I+ L K
Sbjct: 146 AVNMTLHYLDNGTVMLNFIYQKELFFLPLGFALKALVDFTDFQIYQELI----------K 195
Query: 218 GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRD 277
G +D S Q L +GE F+ ++ + ++ A ++ D
Sbjct: 196 GR-----------------EDNSFYKN-QVLSFLGERFRVKMNLPEWYTHQQCATILLED 237
Query: 278 YIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLE 337
I +HL + +KFNLL M +KLF+ + +NPDS+ QE+L PG L ++LKE++
Sbjct: 238 CICIHLKSDAEKFNLLCLMTRKLFTFAKQECMEENPDSITFQEVLTPGQLYLMFLKERMA 297
Query: 338 DWLRKGKKLIQDEIENNGKKFDFFNLA-NIKKVMEK-NPSKQIGTSIETMLKTGRLATQT 395
WL K + KK NL+ + VM+ N + I S E +L TG L++++
Sbjct: 298 AWLVSVKLACE-------KKATRLNLSWSADSVMKIFNMATDISKSFEYLLATGNLSSKS 350
Query: 396 --------------------GLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRT 435
GL + Q G V A++LNF+R++S FR VHRGA+FA +RT
Sbjct: 351 GMAAAARAAPGRRADRCCLAGLGMLQSTGLCVVADKLNFIRYLSHFRCVHRGAAFAKMRT 410
Query: 436 TSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRV 495
TSVRKLLPESWGFLCPVHTPDGEPCGL+NHMT+ C + + S S+ +
Sbjct: 411 TSVRKLLPESWGFLCPVHTPDGEPCGLMNHMTANCEIVAQTAS----------TVSLPAL 460
Query: 496 LIGVGMIPSLPKLVKSGPPAVLS----VLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASV 551
L +G+ P V P S V+LDG VVG + S VV LRR KV
Sbjct: 461 LCSLGVTP-----VDGSPGQAYSDCYPVVLDGAVVGWVESDLAPAVVDALRRFKVLREKK 515
Query: 552 IPDDLEVGYVPLSLGGA-YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFME 610
IP E+ VP + + YP L LFT+P + +RPV+N++L + ELIG FEQ++M
Sbjct: 516 IPPWTEIVLVPKTGKPSLYPALLLFTTPCRMMRPVQNLTLGKQ-----ELIGTFEQLYMN 570
Query: 611 IRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQM-------- 662
+ G A TH+E+ P MLSVVAN PYSDHNQSPRNMYQCQM
Sbjct: 571 V----GVFAAEVQAGVTTHQELFPHSMLSVVANFIPYSDHNQSPRNMYQCQMGECRDGSV 626
Query: 663 --AKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYT 720
KQTMGF + R+D KLY LQTPQ+P+VR + Y Y +D YP+GTNA+VAV++YT
Sbjct: 627 DGGKQTMGFPLHTFADRSDNKLYRLQTPQSPLVRPSMYDHYSLDNYPSGTNAVVAVISYT 686
Query: 721 GYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVID 780
GYDMEDAMI+NK+S +RG HG IY+TE +DL++ D +F + +D
Sbjct: 687 GYDMEDAMIVNKASWERGFAHGSIYKTEVVDLAERVKGDD--SVVFGTTPGDPRVEDKLD 744
Query: 781 SDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANI 840
+DGLP++G ++ G+P+ S D T + + E+ VD + V +S
Sbjct: 745 ADGLPHIGSVLRYGDPFYSYVDLNTGQSSVSYYRSQEACVVDNIKVCSNDS------GAG 798
Query: 841 RFRHT-------RNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFP 893
RF+H RNP IGDKF+SRHGQKG+ S+LWP DMPF+ +GM PD++ NPH FP
Sbjct: 799 RFKHVCITTRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTE-SGMCPDILFNPHGFP 857
Query: 894 SRMTIAMLLESVAAK 908
SRMTI ML+ES+A K
Sbjct: 858 SRMTIGMLIESMAGK 872
>gi|224008096|ref|XP_002293007.1| DNA directed RNA polymerase i, second largest subunit
[Thalassiosira pseudonana CCMP1335]
gi|220971133|gb|EED89468.1| DNA directed RNA polymerase i, second largest subunit
[Thalassiosira pseudonana CCMP1335]
Length = 1069
Score = 640 bits (1651), Expect = e-180, Method: Compositional matrix adjust.
Identities = 364/880 (41%), Positives = 508/880 (57%), Gaps = 74/880 (8%)
Query: 70 NFGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMS 129
NFG P+M ++ CHL G +LV +KEE E GGYFI+NG+ER R + +P+ N+ S
Sbjct: 6 NFGMMPIMTMSKACHLYGKSPAELVKVKEEQTEFGGYFIVNGIERCVRLLQVPRANHATS 65
Query: 130 MVRSSFRDRREGYTDKAVVIRCVRK--DQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVG 187
+ RS++++R + YTD V IRC R D S++T L+YL G L F + +E+LLP+
Sbjct: 66 IQRSNYKNRGKLYTDLGVAIRCQRHNGDMSTITNTLHYLTTGGATLKFVARKQEFLLPLV 125
Query: 188 IVLKALVDTN---------DLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQD 238
+V++AL + D E++N + +G + V R +++L E +
Sbjct: 126 LVMRALSGGDGSTRGHGITDEELYNRIV----------QGDESNTFVRARAELLLREAKQ 175
Query: 239 LS-LTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFML 297
+ + T +CL +G F+ + S S + +I YI +HL DK +FML
Sbjct: 176 FNGMQTPEECLAFVGSRFRLMSMKANSTSDVEIGHYIINRYILIHLPSYGDKLEYTLFML 235
Query: 298 QKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKK 357
+KL+S DN DSLQNQEILLPGHL+ ++KEK ++ L + + E+ + K
Sbjct: 236 RKLYSFAAGDCGVDNADSLQNQEILLPGHLMCTFVKEKFDETLANIRLGLLKEMRMDYTK 295
Query: 358 FDFFNLANIK---KVMEKN---PSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAER 411
++ +K K +++ S IG ++ L TG + + TGLDL Q +GYT+ AE+
Sbjct: 296 L-LTSVPQVKFWTKCVDRYGMLSSGGIGKKVQHFLSTGNIISSTGLDLMQVSGYTIVAEK 354
Query: 412 LNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCR 471
LNFLRF + FR+VHRG F ++TT+VRKLLP+ WGFLCPVHTPDG PCGLL+HM C+
Sbjct: 355 LNFLRFCAHFRSVHRGQFFMEMKTTAVRKLLPDQWGFLCPVHTPDGGPCGLLSHMALKCQ 414
Query: 472 VASY-YDSR-GNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAV-----LSVLLDGR 524
+Y D++ G ++D ++ LI G+ P+ + L V+++GR
Sbjct: 415 CMAYPADAKDGEMQDLDEL-------LISWGVTPAGTGGEGGDGRTISNFTNLPVMVNGR 467
Query: 525 VVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSL-GGAYPGLYLFTSPPKFVR 583
VVG + + LR LKV +P LEV Y+P + GG YPGL+LFT + VR
Sbjct: 468 VVGGASVKLCKSIAFQLRSLKVQEKPTVPPTLEVAYIPPGMKGGPYPGLFLFTIAARVVR 527
Query: 584 PVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRNAFPATHEEIHPTGMLSVVA 642
PV + E IGP EQ FM+I C P+ G TH+E+ P MLS++A
Sbjct: 528 PVLQ-----RATGRTEYIGPMEQPFMDIACLPEDIREG-----ITTHQELDPANMLSLIA 577
Query: 643 NLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYG 702
+LTP+SD+NQSPRNMYQCQM KQTMG +L +RAD K+Y +QTPQ P+V+T + +Y
Sbjct: 578 SLTPFSDYNQSPRNMYQCQMGKQTMGTPCHSLPYRADNKMYKIQTPQAPLVQTAVHGEYK 637
Query: 703 IDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKV--- 759
+DEYP GTNA+VAVL+YTG+DMEDAMILNKSS +RG H +Y+T I L + +V
Sbjct: 638 MDEYPNGTNAVVAVLSYTGFDMEDAMILNKSSYERGFGHASVYKTIKIRLCNKTKRVKIP 697
Query: 760 --DRGQ-KLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGS 816
+ G FR + ++ +D DGLP VGQ + G+ + D N K
Sbjct: 698 PENEGDLPTFRHD----PVYPHLDEDGLPRVGQWVEEGDALYCLADDDGNKGYPGKHKEK 753
Query: 817 ESVFVDYV--------AVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLW 868
E V + + + SK +I R RNP+IGDKFSSRHGQKGV S LW
Sbjct: 754 EKACVQTIRRLNTGGTSSASRGSKGTDDALSITLRFPRNPVIGDKFSSRHGQKGVLSILW 813
Query: 869 PDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
P DMPFS +G+ PD+IINPHAFPSRMTI ML+ES+A K
Sbjct: 814 PQTDMPFS-ESGISPDVIINPHAFPSRMTIGMLIESMAGK 852
>gi|46122499|ref|XP_385803.1| hypothetical protein FG05627.1 [Gibberella zeae PH-1]
Length = 1201
Score = 637 bits (1644), Expect = e-180, Method: Compositional matrix adjust.
Identities = 359/872 (41%), Positives = 519/872 (59%), Gaps = 68/872 (7%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR+ ++Y G+L A +E++ ++ G PV R FGQ PVM+K+ RCHL+G LV K
Sbjct: 118 CRERHVTYRGRLSATLEYR-INGGDPVEFTR-EFGQVPVMIKSNRCHLEGNSPALLVERK 175
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
EE+ E+GGYF++NG+E++ R + L K+N+PM++ R SF++R GYT +++R VR D++
Sbjct: 176 EESEELGGYFVVNGIEKIIRMLQLNKRNFPMAINRPSFQNRGPGYTPYGIILRAVRPDET 235
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
S T L+YL +G++ F + EYL+PV ++LKALV+TND EIF L K
Sbjct: 236 SQTNVLHYLNDGNMTFRFSWRKNEYLVPVMMILKALVETNDREIFEGLVGPAGSK----- 290
Query: 218 GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRD 277
A G+ +++R++++L + +L ++ +GE F+ V+ + + Y V +R
Sbjct: 291 -AAGNTFLTDRIELLLRTYKSYNLYSKSDTRAFLGEKFRVVLGVPDTMTNYEVGTEFLRK 349
Query: 278 YIFVHLND-------NNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITI 330
+ VHL + +N+K+ L++FM++KL++LV DNPD++QNQEILL G L
Sbjct: 350 IVLVHLGNVDVTEEQDNEKYKLILFMIRKLYALVAGECAVDNPDAVQNQEILLGGFLYGQ 409
Query: 331 YLKEKLEDWLRKG-KKLIQDEIENNGKKFDFFNLANIKKVMEKN----PSKQIGTSIETM 385
LKE+ +++L + ++D N F +K N ++ +G ++E
Sbjct: 410 ILKERFDEFLSVNVRGSMRDYFRRNPGIP--FTSEEFRKEFPNNIFRKANENLGNALEYF 467
Query: 386 LKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPES 445
+ TG L +Q+GLDLQQ AG+TV AE+LNF RFIS FR VHRGA FA L+TT+VRKLLPES
Sbjct: 468 MSTGNLQSQSGLDLQQTAGFTVVAEKLNFTRFISHFRMVHRGAFFAQLKTTAVRKLLPES 527
Query: 446 WGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSL 505
WGF+CPVHTPDG PCGLLNH+ C + + Y D S + T L +GV + S
Sbjct: 528 WGFMCPVHTPDGSPCGLLNHLARKCSITTDY------LDVSHIAT--LAAELGVVDVSS- 578
Query: 506 PKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSL 565
+ + V++DG+++G E ++ R KV +P LE+GYVP S
Sbjct: 579 -----ASTDENVVVMMDGKILGYCTPKESVRIADCFRYWKVEGTHGVPLQLEIGYVPPSR 633
Query: 566 GGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIR-CPDGGDGGRRNA 624
GG+YPG+YL ++P + VRPV+ + L E + +GP+EQ +M I P + G+
Sbjct: 634 GGSYPGVYLTSTPARMVRPVKYLPLQKE-----DWVGPYEQPYMSIAVVPQEIESGK--- 685
Query: 625 FPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYH 684
+TH E PT +LS++AN+TP+SD NQSP CQMAKQTMG A +R D K Y
Sbjct: 686 --STHVEFDPTNILSILANMTPFSDFNQSP-----CQMAKQTMGTPGTASVYRTDNKSYQ 738
Query: 685 LQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQI 744
+QT QTPIVR + YG D +P G NA+VAV++YTGYDM+DAMILNKS+ +RG HG I
Sbjct: 739 IQTGQTPIVRAPLHNTYGFDNFPNGFNAVVAVISYTGYDMDDAMILNKSAHERGFGHGTI 798
Query: 745 YQTETIDLSDDG-----NKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCS 799
Y+T+ I L DD V + + + ++D DGLP+VG++I G+ C+
Sbjct: 799 YKTKKISLKDDSRTKATKSVTKAFGFAPHSHVSAHHQGMLDDDGLPHVGRLIQEGDVICA 858
Query: 800 IYDKTT--NSWRTN--------SRKGSESVFVDYVAVDMKNSKNLP-QKANIRFRHTRNP 848
+ T N N K SE F++ V + S N P Q +I+FR R+P
Sbjct: 859 WHTVTPDYNGKLVNLDGITHYEKYKDSEEGFIETVRLIGAESGNEPLQTVSIKFRIPRSP 918
Query: 849 IIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTG 880
I+GDKFSSRHGQKGV SQ WP +D+PFS G
Sbjct: 919 IVGDKFSSRHGQKGVASQKWPTMDLPFSETAG 950
>gi|326432519|gb|EGD78089.1| RNA polymerase [Salpingoeca sp. ATCC 50818]
Length = 1130
Score = 637 bits (1642), Expect = e-179, Method: Compositional matrix adjust.
Identities = 362/881 (41%), Positives = 524/881 (59%), Gaps = 50/881 (5%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CRQ +SY G + ++E + V R GQ P+M+ + +C L + + ++ +
Sbjct: 93 CRQCHVSYKGNITLEIEINVNGHVTTVPR---YVGQAPIMVMSDKCILSKLTTAQKIAKQ 149
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
EEA E GGYFI+NG E+V R +++ ++N+PM+++R SF +R YT+ V IRCVR D++
Sbjct: 150 EEAREFGGYFIINGNEKVIRMLMMARRNHPMALIRPSFMNRGFKYTEYGVQIRCVRPDET 209
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
S L L+ + G LGF ++ ++YL+P ++L+AL D + +I+ + E
Sbjct: 210 SQRLVLHLIEGGRCTLGFSIRKRQYLIPAILLLRALKDVTERDIYEAIV---------ES 260
Query: 218 GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRD 277
S L E VK +L D + + L+++G F+ + S S A +++
Sbjct: 261 DPTDSTL-KEHVKAMLNAAPDNTYSQHTS-LEYLGAMFRIELGMHPSISNIEAARHLLKQ 318
Query: 278 YIFVHL--NDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEK 335
YIFVH+ +D K++LLI M+++L++L +DNPDS NQE+L G + LKE+
Sbjct: 319 YIFVHIPQHDYTAKYDLLIAMIRRLYALKSGRVRADNPDSPMNQEVLQAGQIYGALLKEQ 378
Query: 336 LEDWLRKGKKLIQDEIENNGKKFDFFNLANIK-KVMEKNPSKQIGTSIETMLKTGRLATQ 394
++++L K+ I ++ N G++ D + + + +V P IG +++ L TG L +
Sbjct: 379 MQEYLLAMKRFITMQV-NMGREVDVGDQSYFRNRVFPTMPD--IGKALDYFLATGNLKST 435
Query: 395 TGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHT 454
TGLD Q AG+ + A++LN LR++S FR VHRGA FA ++TT+VRKLLPE+WGF+CPVHT
Sbjct: 436 TGLDQMQAAGFAIVADKLNILRYMSHFRCVHRGAYFAEMKTTAVRKLLPEAWGFICPVHT 495
Query: 455 PDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPP 514
PDG PCGLLNH+T C S S I+ ++ S+ +G+ I P
Sbjct: 496 PDGAPCGLLNHLTRHCTPQSKAVSPAVIKQLRQVVHSLGVQEVGMHRIE----------P 545
Query: 515 AVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYL 574
VL V LDG VVGV IE V LR KV +P+ LE+ ++P + GG YPGLYL
Sbjct: 546 PVLDVFLDGVVVGVANVKTIEAVALKLREYKVLGLHNVPEVLEIAFIPPAEGGVYPGLYL 605
Query: 575 FTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRN---AFPATHEE 631
FT+P + +RPV ++ + ELI EQV+++I D + R + TH E
Sbjct: 606 FTTPTRMLRPVLHLG-----TNKRELISSLEQVYLDIGV-DIAECHRNHEKFGINYTHME 659
Query: 632 IHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTP 691
I GMLSVV++ TP+SD NQSPRNMYQCQM KQTMG QA+ +RAD KLY L + QTP
Sbjct: 660 ISKHGMLSVVSSFTPFSDFNQSPRNMYQCQMGKQTMGIPSQAIPYRADNKLYVLNSGQTP 719
Query: 692 IVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETID 751
+V Y +Y +D+YP G NA+V V+AYTGYDMEDAMI+NK S+DRG H ++ +TE +D
Sbjct: 720 VVHPRAYNEYNLDDYPLGNNAVVCVIAYTGYDMEDAMIINKGSIDRGFMHARVLKTEIVD 779
Query: 752 LSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTN 811
L D V + L R++ S +D DGLP VG M+ G+P+ ++ D+ S +
Sbjct: 780 LVDRSG-VSKAFGLLPRHRAENS--DFLDDDGLPRVGIMVEKGDPFYAVVDE-EQSNHIH 835
Query: 812 SRKGS----ESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQL 867
KG ESV + +A D + + Q+ I RNPIIGDKF+SRHGQKG+ SQ+
Sbjct: 836 RYKGEPARIESVRL-LLASDTSTKREV-QRIAITVSVNRNPIIGDKFASRHGQKGILSQM 893
Query: 868 WPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
P DMPF+ +G+ PD+I NPH FPSRMTI ML+ES+A K
Sbjct: 894 LPSEDMPFTE-SGITPDIIFNPHGFPSRMTIGMLIESMAGK 933
>gi|408394393|gb|EKJ73601.1| hypothetical protein FPSE_06219 [Fusarium pseudograminearum CS3096]
Length = 1200
Score = 635 bits (1639), Expect = e-179, Method: Compositional matrix adjust.
Identities = 357/857 (41%), Positives = 517/857 (60%), Gaps = 61/857 (7%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR+ ++Y G+L A +E++ ++ G PV R FGQ PVM+K+ RCHL+G LV K
Sbjct: 118 CRERHVTYRGRLSATLEYR-INGGDPVEFTR-EFGQVPVMIKSNRCHLEGNSPALLVERK 175
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
EE+ E+GGYF++NG+E++ R + L K+N+PM++ R SF++R GYT +++R VR D++
Sbjct: 176 EESEELGGYFVVNGIEKIIRLLQLNKRNFPMAINRPSFQNRGPGYTPYGIILRAVRPDET 235
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
S T L+YL +G++ F + EYL+PV ++LKALV+TND EIF L K
Sbjct: 236 SQTNVLHYLNDGNMTFRFSWRKNEYLVPVMMILKALVETNDREIFEGLVGPAGSK----- 290
Query: 218 GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRD 277
A G+ +++R++++L + +L ++ +GE F+ V+ + + Y V +R
Sbjct: 291 -AAGNTFLTDRIELLLRTYKSYNLYSKSDTRAFLGEKFRVVLGVPDTMANYEVGTEFLRK 349
Query: 278 YIFVHLND-------NNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITI 330
+ VHL + +N+K+ L++FM++KL++LV DNPD++QNQEILL G L
Sbjct: 350 IVLVHLGNVDVTEEQDNEKYKLILFMIRKLYALVAGECAVDNPDAVQNQEILLGGFLYGQ 409
Query: 331 YLKEKLEDWLRKG-KKLIQDEIENN-GKKF--DFFNLANIKKVMEKNPSKQIGTSIETML 386
LKE+ +++L + ++D N G F + F + K ++ +G ++E +
Sbjct: 410 ILKERFDEFLSVNVRGSMRDYFRRNPGIPFTSEEFRKEFPNNIFRK-ANENLGNALEYFM 468
Query: 387 KTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESW 446
TG L +Q+GLDLQQ AG+TV AE+LNF RFIS FR VHRGA FA L+TT+VRKLLPESW
Sbjct: 469 STGNLQSQSGLDLQQTAGFTVVAEKLNFTRFISHFRMVHRGAFFAQLKTTAVRKLLPESW 528
Query: 447 GFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLP 506
GF+CPVHTPDG PCGLLNH+ C + + Y D S + T L +GV + S
Sbjct: 529 GFMCPVHTPDGSPCGLLNHLARKCSITTDY------LDVSHIAT--LAAELGVVDVSS-- 578
Query: 507 KLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLG 566
+ + V++DG+++G E ++ R KV +P LE+GYVP S G
Sbjct: 579 ----ASTDENVVVMMDGKILGYCTPKESVRIADCFRYWKVEGTHGVPLQLEIGYVPPSRG 634
Query: 567 GAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRNAF 625
G+YPG+YL ++P + VRPV+ + L E+ +GP+EQ +M I P + G+
Sbjct: 635 GSYPGVYLTSTPARMVRPVKYLPLQKED-----WVGPYEQPYMSIAVVPQEIESGK---- 685
Query: 626 PATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHL 685
+TH E PT +LS++AN+TP+SD NQSPRNMYQCQM+KQTMG A +R D K Y +
Sbjct: 686 -STHVEFDPTNILSILANMTPFSDFNQSPRNMYQCQMSKQTMGTPGTASVYRTDNKSYQI 744
Query: 686 QTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIY 745
QT QTPIVR + YG D +P G NA+VAV++YTGYDM+DAMILNKS+ +RG HG IY
Sbjct: 745 QTGQTPIVRAPLHNTYGFDNFPNGFNAVVAVISYTGYDMDDAMILNKSAHERGFGHGTIY 804
Query: 746 QTETIDLSDDG-----NKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSI 800
+T+ I L DD V + + + ++D DGLP+VG++I G+ C+
Sbjct: 805 KTKKISLKDDSRTKATKSVTKAFGFAPHSHVSAHHQGMLDDDGLPHVGRLIQEGDVVCAW 864
Query: 801 YDKTT--NSWRTN--------SRKGSESVFVDYVAVDMKNSKNLP-QKANIRFRHTRNPI 849
+ T N N K SE F++ V + S N P Q +I+FR R+PI
Sbjct: 865 HTVTPDYNGKLVNLDGITHYEKYKDSEDGFIETVRLIGAESGNEPLQTVSIKFRIPRSPI 924
Query: 850 IGDKFSSRHGQKGVCSQ 866
+GDKFSSRHGQKGV SQ
Sbjct: 925 VGDKFSSRHGQKGVASQ 941
>gi|156361325|ref|XP_001625468.1| predicted protein [Nematostella vectensis]
gi|156212303|gb|EDO33368.1| predicted protein [Nematostella vectensis]
Length = 913
Score = 635 bits (1638), Expect = e-179, Method: Compositional matrix adjust.
Identities = 357/904 (39%), Positives = 512/904 (56%), Gaps = 112/904 (12%)
Query: 10 EPLRELVRHHIESFDYMLDEGLSEMFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRERF 69
+ +++LVR HIESF++ML+EGL + CR+ +Y KL ++++ + V +
Sbjct: 32 QSIQDLVRPHIESFNFMLEEGLP-LAAQCREKGSTYCSKLQVTLQWKIDNVPQGSVTKVI 90
Query: 70 NFGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMS 129
P+M+K+ C L ++LV EE+ E GGYFI+NG+E++ R +ILP++NYP++
Sbjct: 91 --AAIPLMVKSNNCSLANLSPKELVRKNEESQEAGGYFIVNGIEKIIRMLILPRRNYPLA 148
Query: 130 MVRSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIV 189
++R S++ R YT+ V +R V+ DQS+V + L+YL +G+V + + + Y +PV +
Sbjct: 149 IIRPSWKGRGSFYTEYGVQMRSVKGDQSAVNMTLHYLNDGNVMMCIAYRKELYYVPVVFI 208
Query: 190 LKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQ 249
LKAL++ D I+ L K + + V ++L Q+ + L+
Sbjct: 209 LKALMNVTDQHIYRELI----------KAEENNTFWKDCVAMMLRTAQEEGAVNQKSVLE 258
Query: 250 HIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSV 309
+IG F+ + S AVA+ +I+ I +HL+ N DKFNLLI M +KL++L
Sbjct: 259 YIGLRFRVKMRLPDWFSDEAVAQYLIQQCICIHLDTNADKFNLLILMTRKLYALALEKCC 318
Query: 310 SDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKV 369
+++ DS NQE+LL GHL + LK
Sbjct: 319 AESADSPMNQEVLLGGHLYLMVLK------------------------------------ 342
Query: 370 MEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGAS 429
+E L TG L +++GL LQQ +G+TV A+RLN+ RF+S FR +HRGA
Sbjct: 343 ------------MEYFLATGNLISKSGLALQQISGFTVVADRLNYFRFLSHFRCIHRGAF 390
Query: 430 FAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMR 489
F+ +RTTSVRKLLPE+WGFLCPVHTPDG PCGLLNH+ + C+V + +
Sbjct: 391 FSQMRTTSVRKLLPEAWGFLCPVHTPDGAPCGLLNHLAAGCQVV----------NVVPLV 440
Query: 490 TSILRVLIGVGMIP---SLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKV 546
+LR+L +GMIP +P K+ P V++DGRV+G + + LR +KV
Sbjct: 441 AHMLRLLCTMGMIPVDAPVPGDYKNYYP----VVMDGRVLGSVDRDLAPTLANRLRIMKV 496
Query: 547 SAASVIPDDLEVGYVPLS-LGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFE 605
+P LE+ VP++ + YPGL++F+SP + +RPV N+++ IE+IG FE
Sbjct: 497 LGEERVPQFLEICLVPITKVASQYPGLFIFSSPARMMRPVLNLAV-----NKIEMIGSFE 551
Query: 606 QVFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQ 665
QV+M+I + TH E+ PT MLS +A++TPYSD NQSPRNMYQCQM KQ
Sbjct: 552 QVYMDIAIVQE----ELHEGVTTHMELKPTAMLSAIASMTPYSDFNQSPRNMYQCQMGKQ 607
Query: 666 TMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDME 725
TMG V A + R D KLY +QTPQ+P+VR ++ Y +DEYP GTNAIVAV++YTGYDME
Sbjct: 608 TMGTPVHAFQHRTDNKLYRIQTPQSPLVRPASHDFYIMDEYPLGTNAIVAVISYTGYDME 667
Query: 726 DAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKL-FRRNKDAKSLHSVIDSDGL 784
DAM+LNK+S +RG HG IY+ + ++L L F D + +D+DG
Sbjct: 668 DAMVLNKASYERGFAHGSIYKAQFVNLEPKSQDRTSSSNLQFGTLPDDPRIDGRLDADGF 727
Query: 785 PYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRH 844
P +G + G+PY S D T E+ +D
Sbjct: 728 PPLGAHLSTGDPYYSYIDTNTGEAVVKKYSNLEAGIID---------------------- 765
Query: 845 TRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLES 904
RNPIIGDKFSSRHGQKG+CSQ WP +MPFS +GM PD+I NPH FPSRMTI M++ES
Sbjct: 766 DRNPIIGDKFSSRHGQKGICSQKWPVENMPFSE-SGMTPDIIFNPHGFPSRMTIGMMIES 824
Query: 905 VAAK 908
+A K
Sbjct: 825 MAGK 828
>gi|393908209|gb|EJD74955.1| DNA-directed RNA polymerase [Loa loa]
Length = 1128
Score = 634 bits (1636), Expect = e-179, Method: Compositional matrix adjust.
Identities = 360/885 (40%), Positives = 518/885 (58%), Gaps = 56/885 (6%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CRQ ++Y G L ++E G+ + G+ P+MLK+ RCHL+ ++L++
Sbjct: 73 CRQRGLTYRGPLKVNIEICL--NGAKMDFCEVIVGEVPIMLKSNRCHLRWLTREQLIAHG 130
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
EE E GGYFI G E+V R ++ ++NYP+ +VR SFR++ +T V+IRCVR + S
Sbjct: 131 EEGTEKGGYFICKGNEKVIRLLVANRRNYPIGLVRHSFREKGSLFTQYGVMIRCVRGNYS 190
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
+ + L+YL +G++ + + + + LP V+K+L ND I H+ C
Sbjct: 191 AAMMTLHYLESGTIVIALQYRRELFYLPFMYVIKSLTSMNDQCIMEHMIRCRP------- 243
Query: 218 GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQS--ESYYAVAETVI 275
G V +LA D + + L IGE F+ E V ++
Sbjct: 244 ---GDHFWKGCVTTMLALCSDDGIVNQKAALTAIGERFRVATQDRVGPWEVSEDVGRFLL 300
Query: 276 RDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEK 335
R + +HL+++ DKF LL +M QKL +L +++PD+ Q QE + GH++ + ++E+
Sbjct: 301 RVCVAIHLDNDEDKFFLLSYMAQKLIALTKGECAAESPDNPQFQEAAVSGHILLLIIRER 360
Query: 336 LEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQT 395
LE+ L ++ I+ E + + F + + + M S +I +E L TG L ++
Sbjct: 361 LENTLNIARRKIELEAKRKAESF-LLSSHELIRAMGTQRSGEITRGLEYFLATGNLISRG 419
Query: 396 GLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTP 455
GL LQQ G++V AER+N LRF+S FRA+HRGA F +RTT VRKL PE+WGF+CPVHTP
Sbjct: 420 GLTLQQNNGFSVIAERINQLRFVSHFRAIHRGAFFMEMRTTDVRKLRPEAWGFICPVHTP 479
Query: 456 DGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIG-VGMIP-SLPKLVKSGP 513
DG PCGLLNH+ ++ R+ ++Y + TS L L+G +GM+ S L+ + P
Sbjct: 480 DGAPCGLLNHVAASVRIVTHYSN-----------TSELPKLLGELGMVGHSAITLLPAEP 528
Query: 514 PAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYV-----PLSLGGA 568
+ VL+DG+ VG I S+ V LR LKVS +P E+ V P+++
Sbjct: 529 --MYPVLVDGKFVGHISQSQASYVEQQLRVLKVSDDIRVPSCAEIILVEKSIDPINILVQ 586
Query: 569 YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPAT 628
YPGLY+FT P +RPV+ LPS+ +E IG FEQV++ I C D +
Sbjct: 587 YPGLYIFTEPGHLMRPVK--YLPSDR---VEFIGTFEQVYLSI-CIDPEEA---EPNVTM 637
Query: 629 HEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTP 688
H+EIHP+ + S ANL P+ DHNQSPRN+YQCQM KQTMG V A +RAD K+Y LQ P
Sbjct: 638 HQEIHPSCLFSFAANLIPFPDHNQSPRNVYQCQMGKQTMGTPVHAWNYRADNKMYRLQFP 697
Query: 689 QTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTE 748
Q PIV+ Y KYGIDEYP GTNA VAV++YTGYDMEDAM++NKSS +RG HG + + E
Sbjct: 698 QNPIVKPEPYEKYGIDEYPLGTNACVAVISYTGYDMEDAMVINKSSYERGFAHGSVIKVE 757
Query: 749 TIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSW 808
++L++ R + D ++ ID DGLP G++ G+PY S+YD TNS+
Sbjct: 758 RVNLTE-----GRSAECPIFLCDPENPQKTIDLDGLPIPGRLYMEGDPYYSVYDIDTNSY 812
Query: 809 RTNSRKGSESVFVDYVAVDMKNSKNLPQK-----ANIRFRHTRNPIIGDKFSSRHGQKGV 863
+ + K +E+ F V + ++ +N+ A I++R RNPIIGDKF+SRHGQKG+
Sbjct: 813 KIHKYKYAEAAFCGSVRI-VEEGENVGANKGKCHALIQWRTRRNPIIGDKFASRHGQKGI 871
Query: 864 CSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
S LWP MPFS +GM PD+I NPH FPSRMTI M++ES+A K
Sbjct: 872 NSFLWPTESMPFSE-SGMVPDIIFNPHGFPSRMTIGMMIESMAGK 915
>gi|307213328|gb|EFN88780.1| DNA-directed RNA polymerase I subunit RPA2 [Harpegnathos saltator]
Length = 1119
Score = 633 bits (1633), Expect = e-178, Method: Compositional matrix adjust.
Identities = 363/952 (38%), Positives = 540/952 (56%), Gaps = 108/952 (11%)
Query: 12 LRELVRHHIESFDYMLDEGLSEMFD----------------------------------- 36
L+ L HIESF+YML++GL E
Sbjct: 25 LQNLGIPHIESFNYMLEDGLLEGLKDSPPVYLNLPNNDKIALWLDDVCIYQPTVPTGVIG 84
Query: 37 ---------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQG 87
CRQ +Y GK+ + + + + + G+ P+M+K+ RC+L
Sbjct: 85 VKNYKIYPTECRQRGSTYRGKITVKLGWSINGVQQETLEK--DLGEVPIMVKSNRCYLNK 142
Query: 88 ADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAV 147
+ ++LV E E GGYFI+ GLER+ R +++ ++NYP++M RS ++ R ++D +
Sbjct: 143 MNPKQLVEHGEHEQEWGGYFIIKGLERIVRMLLMTRRNYPIAMKRSGWKSRGIQFSDLGI 202
Query: 148 VIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTC 207
++R VR D ++ T L+Y+++GS + F + Y +P+ ++LK L+D D+ I+N L
Sbjct: 203 LLRTVRDDNTATTNVLHYVMDGSAKFMFMYRKVLYYVPLLLMLKCLIDITDVCIYNALIA 262
Query: 208 -CYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQ-PVIDGLQSE 265
C D+ Y K G + + +L V + +L + QC +IG+ F+ +
Sbjct: 263 GCEDDLYYK--GCILN---------MLRAVHEENLHSHEQCKAYIGKIFRVKFFEAPPDA 311
Query: 266 SYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPG 325
+ + + +I+ + +HLN DKF+LL+FM +KLF+ ++ + D + QE LL G
Sbjct: 312 TDIDICDYIIKHCVAIHLNKPADKFHLLVFMTKKLFTFANNKCAVEGADGVMMQECLLGG 371
Query: 326 HLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIET- 384
HL +KEKL WL K I + G ++ I V E + + G+SIE+
Sbjct: 372 HLYLQVIKEKLISWLTSLKITILKRANSAGNRY-------ILTVQEMLNASKFGSSIESQ 424
Query: 385 ---MLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKL 441
L TG L + TGL L Q G T+ AE +N +R++S FRA+HRG+ F +RTT R+L
Sbjct: 425 MENFLSTGNLKSSTGLGLTQSTGLTIVAENINRMRYMSHFRAIHRGSFFQEMRTTETRQL 484
Query: 442 LPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGM 501
LP++WGF+CPVHTPDG PCGLLNH+T C V + D K++ +I R+L+ +GM
Sbjct: 485 LPDAWGFICPVHTPDGTPCGLLNHLTMNCIVTKHPDC--------KLKAAIPRILVDLGM 536
Query: 502 IP-SLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGY 560
IP S+ K+ +V+LDG+V+G+I + I +V LR LKV+ V P+ LE+
Sbjct: 537 IPLSIANNWKNS----YTVMLDGKVIGLIEDNIINRVTCKLRELKVNGEEV-PNTLEIAL 591
Query: 561 VPL-SLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC--PDGG 617
VP ++ YPGLYLFT+ + +RPV N++ +Q IELIG FEQV+++I C P+
Sbjct: 592 VPKKTIPAQYPGLYLFTNAARMMRPVINLA-----TQKIELIGTFEQVYLDI-CVIPEEA 645
Query: 618 DGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFR 677
G +H+E+ T +LS +A L P D NQSPRNMYQCQM KQTMG + +
Sbjct: 646 YDGL-----TSHQELSNTTILSNLACLIPMPDCNQSPRNMYQCQMGKQTMGTPCHNWQLQ 700
Query: 678 ADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDR 737
+ KLY LQTP TP R Y +D++ GTNAI+AV++YTGYDMEDAM++NK++ DR
Sbjct: 701 SQTKLYRLQTPATPFFRPVHYDNINMDDFAMGTNAIIAVISYTGYDMEDAMVINKAAYDR 760
Query: 738 GMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPY 797
G +G IY++E +DL+D + F RN D L +D DGLP +G I G+ Y
Sbjct: 761 GFAYGMIYKSEFVDLNDQ-------RSYFARNPDKTCLGETLDVDGLPMIGTRIKEGDIY 813
Query: 798 CSIYDKTTNSWRTNSRKGSESVFVDYVAV-DMKNSKNLPQKANIRFRHTRNPIIGDKFSS 856
YD +++ T + E +VD V + NSKN+ ++A I FR +RNP +GDKF+S
Sbjct: 814 YCYYDADQSTYVTGTYYSKEDAYVDNVKLCGTLNSKNV-RRACITFRISRNPNVGDKFAS 872
Query: 857 RHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
R GQKG+CSQ WP D+PF+ +G+ PD+I NPH FPSRMTIAM++E +A K
Sbjct: 873 RAGQKGICSQKWPAEDLPFTE-SGLIPDIIFNPHGFPSRMTIAMMIEVMAGK 923
>gi|340712517|ref|XP_003394805.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2-like [Bombus
terrestris]
Length = 1122
Score = 633 bits (1632), Expect = e-178, Method: Compositional matrix adjust.
Identities = 359/946 (37%), Positives = 537/946 (56%), Gaps = 96/946 (10%)
Query: 12 LRELVRHHIESFDYMLDEGLSEMF------------------------------------ 35
L+ L HI+SF+YML++GLSE
Sbjct: 25 LQSLGAPHIDSFNYMLEDGLSEAVRDNPFVYIYLPNEDKIALWIDDVSIHQPNIPSGAIG 84
Query: 36 --------DHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQG 87
CRQ +Y GK+ + + ++ ER + G+ P+M+K+ RCHL
Sbjct: 85 VKNHKIYPTECRQRGCTYKGKITVKLGWS-INNNVQETLER-DLGEIPIMIKSNRCHLNK 142
Query: 88 ADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAV 147
+ LV+ E E GGYFI+ GLER+ R ++L ++NYP+++ RSS++ R ++D +
Sbjct: 143 MSPKDLVAHGEHEQEWGGYFIIKGLERIIRMLLLTRRNYPIAIRRSSWKARGIQFSDLGL 202
Query: 148 VIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTC 207
++R VR D ++ L+Y+ +GS +L F + Y +P+ ++LK LVD +D+ I+N LT
Sbjct: 203 LLRSVRDDNTTANNTLHYVTDGSAKLMFSYRKVLYYVPLILMLKCLVDVSDIFIYNALTA 262
Query: 208 -CYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSES 266
C D+ Y K G + + +L V + L + +C +IG F+ + L ++
Sbjct: 263 GCEDDLYYK--GCILN---------MLRAVHEQGLNSHEECKAYIGRMFRIKLFELPHDA 311
Query: 267 Y-YAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPG 325
V + +I+ I +HL+D DKF LL+FM +KLF+L ++ + D++ QE LL G
Sbjct: 312 TDIDVCDFIIKHCIAIHLHDPLDKFYLLVFMTKKLFALANNKCAVEGADAVMMQECLLGG 371
Query: 326 HLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETM 385
HL LKEKL WL K I + G ++ N+ + VM+ S + + +E
Sbjct: 372 HLYLQVLKEKLYSWLTGLKMGILKRARSAGNRYTL-NVQEMLNVMKHGSS--LESQMENF 428
Query: 386 LKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPES 445
L TG L + TGL L Q G T+ AE +N +R++S FRA+HRG+ F +RTT R+LLP++
Sbjct: 429 LSTGNLRSPTGLGLMQSTGLTIVAENINRMRYMSHFRAIHRGSFFQEMRTTEARQLLPDA 488
Query: 446 WGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSL 505
WGF+CPVHTPDG PCGLLNH+T C + + + K++ ++ +L+ +GMIP
Sbjct: 489 WGFICPVHTPDGAPCGLLNHLTMNCIITKHTNP--------KLKANVPIILMDLGMIPLS 540
Query: 506 PKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPL-S 564
+ V+LDG+++G+I + I +V LR LK+ V P +E+ VP +
Sbjct: 541 ---IADNWKKSYIVILDGKLIGLIDDNIISRVTDKLRLLKIKGQEV-PCTMEIALVPKKN 596
Query: 565 LGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC--PDGGDGGRR 622
+ YPGLYLFT+P + +RPV N++ ++ +E IG FEQ+++ I C P+ G
Sbjct: 597 VPAQYPGLYLFTNPARMMRPVMNLA-----AKKVEYIGTFEQIYLNI-CVTPEEAYEGL- 649
Query: 623 NAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKL 682
+H+E+ T LS +A+L P D NQSPRNMYQCQM KQTMG + +++ KL
Sbjct: 650 ----TSHQELSKTAFLSNLASLIPMPDCNQSPRNMYQCQMGKQTMGTPCHTWQLQSETKL 705
Query: 683 YHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHG 742
Y LQTP TP+ R Y + +D++ GTNAIVAV++YTGYDMEDAMI+NK++ DRG HG
Sbjct: 706 YRLQTPATPLFRPVHYDEIDLDDFAMGTNAIVAVISYTGYDMEDAMIINKAAHDRGFAHG 765
Query: 743 QIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYD 802
IY++E +DL D + F RN D L +D DGLP +G MI G+ Y YD
Sbjct: 766 MIYKSEFVDLKDQ-------KSYFARNPDKSDLAEKLDVDGLPILGTMISEGDVYYCYYD 818
Query: 803 KTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKG 862
+++ T G E ++D V + ++P++A I FR RN +GDKF+SR GQKG
Sbjct: 819 ADQSTYVTGKYHGKEDAYIDTVKLCGTLHNHIPRRACITFRIPRNANVGDKFASRAGQKG 878
Query: 863 VCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
+CSQ WP D+PF+ TG+ PD++ NPH FPSRMTIAM++E +A K
Sbjct: 879 ICSQKWPSEDLPFTE-TGLIPDIVFNPHGFPSRMTIAMMIEVMAGK 923
>gi|328792060|ref|XP_001120416.2| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 [Apis
mellifera]
Length = 1122
Score = 632 bits (1631), Expect = e-178, Method: Compositional matrix adjust.
Identities = 362/948 (38%), Positives = 540/948 (56%), Gaps = 100/948 (10%)
Query: 12 LRELVRHHIESFDYMLDEGLSE-------MFDH--------------------------- 37
L+ L HI+SF+YML++GL + ++ H
Sbjct: 25 LQRLGAPHIDSFNYMLEDGLCKAVKDNPHVYIHLPNKDKVALWIDDVSIDQPSVPSGIIG 84
Query: 38 ----------CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQG 87
CRQ SY GK+ + + D + + G+ P+M+K+ RCHL
Sbjct: 85 IKTHKIYPTECRQRGCSYKGKITVKLGWSINDKLQETLAR--DLGEIPIMIKSNRCHLNK 142
Query: 88 ADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAV 147
+ + L+ E E GGYF++ GLER+ R +++ ++NYP+++ RS ++ R ++D +
Sbjct: 143 MNPKDLILHGEHEQEWGGYFVIKGLERIIRMLLMTRRNYPIAIKRSGWKTRGIQFSDLGL 202
Query: 148 VIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLT- 206
+R VR D ++ L+Y+ +GS +L F + Y +P+ ++LK LVD +D+ I+N LT
Sbjct: 203 FLRSVRDDNTTANNTLHYVTDGSAKLMFSHKKVLYYVPLILILKCLVDVSDIFIYNVLTA 262
Query: 207 -CCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSE 265
C YD YK G + + +L V + L +C +IG+ F+ L +
Sbjct: 263 GCEYDLYYK---GCILN---------MLRAVHEQGLNNHEECKAYIGKMFRIKFFELPED 310
Query: 266 SY-YAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLP 324
+ V + +I+ I +HLN+ DKF LL FM +KLF+L ++ + DS+ QE LL
Sbjct: 311 ATDIDVCDFIIKHCIAIHLNNPLDKFYLLAFMTKKLFALANNKCAVEGADSVMMQECLLG 370
Query: 325 GHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIET 384
GHL LKEKL WL K I + G ++ N+ + +M+ S + + +E
Sbjct: 371 GHLYLQVLKEKLYSWLTNLKMSILKRARSAGNRYTL-NVQEMLNIMKYGNS--LESQMEN 427
Query: 385 MLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPE 444
L TG L + TGL L Q G T+ AE +N +R++S FRA+HRG+ F +RTT R+LLP+
Sbjct: 428 FLSTGNLRSSTGLGLMQNTGLTIVAENINRMRYMSHFRAIHRGSFFQEMRTTEARQLLPD 487
Query: 445 SWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIP- 503
+WGF+CPVHTPDG PCGLLNH+T C + + D+ K++ +I +L+ +GMIP
Sbjct: 488 AWGFICPVHTPDGAPCGLLNHLTMNCIITKHPDA--------KLKANIPIILMDLGMIPL 539
Query: 504 SLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPL 563
S+ K+ V+LDG+++G+I + I +V LR LK+ V P +E+ VP
Sbjct: 540 SIADNWKNS----YIVMLDGKLIGLIDDNIIARVTDKLRLLKIKGQEV-PYMMEIALVPK 594
Query: 564 -SLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC--PDGGDGG 620
++ YPGLYLFTSP + +RP+ N++ ++NIE IG FEQ++++I C P+ G
Sbjct: 595 KTVPAQYPGLYLFTSPARMMRPIMNLA-----AKNIEYIGTFEQIYLDI-CVTPEEAYEG 648
Query: 621 RRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQ 680
+H+E+ T LS +A+L P D+NQSPRNMYQCQM+KQTMG + +++
Sbjct: 649 L-----TSHQELSKTAFLSNLASLIPMPDYNQSPRNMYQCQMSKQTMGTPCHTWQLQSET 703
Query: 681 KLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMC 740
KLY LQTP TP+ R + K +D++ GTNAIVAV++YTGYDMEDAMI+NK++ DRG
Sbjct: 704 KLYRLQTPATPLFRPVHHDKINLDDFAMGTNAIVAVISYTGYDMEDAMIINKAAYDRGFA 763
Query: 741 HGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSI 800
HG IY++E IDL D + F RN D L +D DGLP G +I G+ Y
Sbjct: 764 HGMIYKSEFIDLKDQ-------KSYFARNPDKSELVEKLDIDGLPLPGTIISEGDVYYCY 816
Query: 801 YDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQ 860
YD +++ T G E +VD V + ++P++A I FR RNP +GDKF+SR GQ
Sbjct: 817 YDADQSTYITGKYHGKEDAYVDTVKLCGTLHNHIPRRACITFRIPRNPSVGDKFASRAGQ 876
Query: 861 KGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
KG+CSQ W D+PF+ TG+ PD++ NPH FPSRMTIAM++E +A K
Sbjct: 877 KGICSQKWSAEDLPFTE-TGLIPDIVFNPHGFPSRMTIAMMIELMAGK 923
>gi|198426188|ref|XP_002131003.1| PREDICTED: similar to RNA polymerase I polypeptide B [Ciona
intestinalis]
Length = 1144
Score = 632 bits (1630), Expect = e-178, Method: Compositional matrix adjust.
Identities = 356/963 (36%), Positives = 539/963 (55%), Gaps = 101/963 (10%)
Query: 2 ARKKSADFEPLRELVRHHIESFDYMLDEGLSEMF-------------------------- 35
+ + A P+++L R H++SF++ +++G+ +
Sbjct: 27 GKPEEAQHPPIQDLTRPHVDSFNWFVNDGVKLLAKGLAPLEVLINNDRLALSFTDISVEK 86
Query: 36 -----------------DHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVML 78
CRQ +Y K+ A + F+ + G P+M+
Sbjct: 87 PKIEDGFRNCRTTQVYPSECRQRGATYQAKIQASLSFEINGMKQGTIPR--CLGTIPIMV 144
Query: 79 KTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDR 138
K+ RC+L G ++LV +EE EMGGYF++NG E+V R +I+ ++NYP+ +VR S+++R
Sbjct: 145 KSDRCNLHGLSPKELVEKQEEEQEMGGYFVVNGNEKVVRMLIMQRRNYPVGIVRPSWKNR 204
Query: 139 REGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTND 198
+ YT+ V +R + +DQ++ L+YL NG+V + + + + + LP+ ++LKALV +D
Sbjct: 205 GQNYTEFGVSVRSMTEDQTTAPFVLHYLSNGTVTICVYHRKEMFFLPLVLILKALVPFSD 264
Query: 199 LEIFNHL----------TCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCL 248
+I+ L TCC V+ +L + Q +L + L
Sbjct: 265 RDIYKELIKTKEDDTYFTCC--------------------VQNMLRQAQAYNLFEQKDFL 304
Query: 249 QHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTS 308
+++GE F+ ++ S +A +++ ++ +HL+ N DKF L+ FM +K+F L
Sbjct: 305 RYLGEKFRIKLNRASWYSDTDIAHFMLKHHVLIHLDSNEDKFRLISFMTRKVFDLALGKC 364
Query: 309 VSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKK 368
+ D+ DS+QNQE+LLPGHL + +KEKL WL +++ + K L+++
Sbjct: 365 MPDDADSVQNQEVLLPGHLFQMVIKEKLNLWLLTLSRVVLRKATAAKAKTAIPGLSSVLI 424
Query: 369 VMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGA 428
+ + +++ +L TG L + TGL L Q AG TV A++LN++R+IS FR +HRGA
Sbjct: 425 QNSMSSVPDVTSAMSYLLATGTLVSNTGLGLMQFAGLTVIADKLNYMRYISHFRCIHRGA 484
Query: 429 SFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKM 488
FA +RTT+VRKLLPESWGFLCPVHTPDG PCGL+NHM+ C + ++ S
Sbjct: 485 FFAQMRTTTVRKLLPESWGFLCPVHTPDGSPCGLMNHMSFLCEIVTHPPSN--------- 535
Query: 489 RTSILRVLIGVGMI-PSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVS 547
++L +L +GM+ P+ ++ G V+LDG+++G +P + + V +R K
Sbjct: 536 -DAMLPLLNRLGMLSPTTSEVAGFG--KFYPVILDGKLIGWMPVHQGHQAVNVIRCKKAR 592
Query: 548 AASVIPDDLEVGYVPLS-LGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQ 606
+P LE+ + + YPGLYL + + VRPV N+ + +E+IG FEQ
Sbjct: 593 GQDNVPITLEICLIEYTGKPTQYPGLYLMSQEARMVRPVMNLI-----TGTVEMIGSFEQ 647
Query: 607 VFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQT 666
V+M I C + + TH+E+ +LS VA+LTPYSD NQSPRNMYQCQM KQT
Sbjct: 648 VYMNI-CIIPEEAHKM----TTHQELSQHSILSAVASLTPYSDFNQSPRNMYQCQMGKQT 702
Query: 667 MGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMED 726
MG QA+ +RAD KLY +QTPQ +VR Y Y +D +P G NA+VAV++YTGYDMED
Sbjct: 703 MGTPCQAIAYRADNKLYRIQTPQAALVRPYMYDHYKMDNFPFGQNAVVAVISYTGYDMED 762
Query: 727 AMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPY 786
AMILNK S DRG +G IY+T+ IDLS KD + + +DGLP
Sbjct: 763 AMILNKGSFDRGFAYGTIYKTDLIDLSSKVGDRTVNVTFGTNPKDDRFPDLNLGADGLPA 822
Query: 787 VGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLP-QKANIRFRHT 845
VGQ + G+ Y S D + + + G E+ +VD V V N+ ++ +I R
Sbjct: 823 VGQRLLTGDNYYSYIDHSNSEMKVVKYSGQETGYVDSVRVLSNNAGTGHFKRVSIVLRVQ 882
Query: 846 RNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESV 905
RNPIIGDKF+SRHGQKG+CSQ WP ++PF+ +GM PD++ NPH FPSRMTI M++ES+
Sbjct: 883 RNPIIGDKFASRHGQKGICSQKWPMANLPFTE-SGMFPDIVFNPHGFPSRMTIGMMIESM 941
Query: 906 AAK 908
A K
Sbjct: 942 AGK 944
>gi|145343599|ref|XP_001416405.1| DNA-directed RNA polymerase I polypeptide 2 [Ostreococcus
lucimarinus CCE9901]
gi|144576630|gb|ABO94698.1| DNA-directed RNA polymerase I polypeptide 2 [Ostreococcus
lucimarinus CCE9901]
Length = 1145
Score = 632 bits (1629), Expect = e-178, Method: Compositional matrix adjust.
Identities = 360/878 (41%), Positives = 516/878 (58%), Gaps = 47/878 (5%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR+ SY L V+F + G V R N G PVM+K+ C L +LV+
Sbjct: 107 CREGGESYKAPL--SVQFCWQIDGENVQRRVVNLGDCPVMVKSDVCSLALLSPAQLVARG 164
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
EEA E GGYFI+NG+ER+ R +I ++++ + + R +F R +++ A VIRCV +D+
Sbjct: 165 EEAHEAGGYFIINGIERMIRMIIQQRRHHILGLCRRAFTKRSPLFSEFATVIRCVTEDEH 224
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
S ++L+Y+ G++RL + +E+ +P GIVL+AL +D E++ + C +
Sbjct: 225 SSIVRLHYMRTGALRLALQHRRQEFFIPAGIVLRALAVCSDAEMYRQV-CLH-----LRS 278
Query: 218 GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRD 277
+ +R+ ++ E +L + T++ L ++G+HF+ ++D ES +V E + D
Sbjct: 279 AGTDETFIEDRLALLQRECHELQIRTQMCALSYLGQHFRTLLDLSSDESDISVGERFLED 338
Query: 278 YIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLE 337
+I+VHL N DK +LLI ML KL S+V D+PDSL NQE+L+PG L+ ++EK+
Sbjct: 339 FIYVHLQHNGDKLSLLILMLSKLLSIVTGRCSPDDPDSLVNQEVLVPGLLLQAMIREKVR 398
Query: 338 DWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGL 397
+K++ G ++ I ++ ++ S +G +E L TG L + TGL
Sbjct: 399 IAF---QKVVTHLRRTQGS----WSEETISHLINESGSSDVGKVVEYFLATGNLVSPTGL 451
Query: 398 DLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDG 457
L Q +G+T+ AE+LN+ R+IS FR+VHRGA F LRTT+VRKLLPESWGFLCPVHTPDG
Sbjct: 452 GLSQTSGFTIVAEKLNYFRYISHFRSVHRGAYFMELRTTTVRKLLPESWGFLCPVHTPDG 511
Query: 458 EPCGLLNHMTSTCR-VASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAV 516
PCGLLNH+ C V D + ++ + + R LI V A
Sbjct: 512 SPCGLLNHLAEMCEIVMPDTDHVFQQKRLLQIHSVLDRALISVEQYDC--------GYAH 563
Query: 517 LSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYV-PLSLGGAYPGLYLF 575
+ V+L+G VG I + V++ LR KV+ + + E+ Y+ P G +PGLY+F
Sbjct: 564 VPVVLEGSFVGYISAENASHVISALRAFKVTLTTSVLRMSEISYIHPGGEHGLFPGLYIF 623
Query: 576 TSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIHPT 635
P + +RPV+ + ES +E IG EQ F+ I NA TH EI T
Sbjct: 624 YGPSRLMRPVKQV-----ESMKVEFIGTLEQAFLSI---SAHQVESHNA-SYTHAEIRNT 674
Query: 636 GMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRT 695
LS VA+LTP+SD NQSPRNMYQCQMAKQTMG + + +R+D KLY L TPQ P+ T
Sbjct: 675 SALSCVASLTPWSDFNQSPRNMYQCQMAKQTMGTPMHTICYRSDTKLYRLHTPQRPLALT 734
Query: 696 NTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDD 755
TY KY +D+Y GTNA+VAV+AYTGYDMEDAMI+NK S+ RG H +Y+T +S +
Sbjct: 735 CTYDKYSLDDYALGTNAVVAVIAYTGYDMEDAMIVNKGSLHRGFAHATLYKTLVEGISAN 794
Query: 756 GNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKT-TNSWRTNSRK 814
+ L RR+ S + +D G +G ++ PG+ +++ R+ +
Sbjct: 795 -------ETLSRRDNTYTSENKQLDGTGSVQLGSIVRPGDTLLNLHSSDGVTKGRSIRLR 847
Query: 815 GSESVFVDYV----AVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPD 870
G+++ VD V +V +KN ++A I R+ RNP+IGDKFSSRHGQKGV S LWP+
Sbjct: 848 GTDAAVVDKVVLTQSVKQAATKN-DKRAAITLRYDRNPVIGDKFSSRHGQKGVLSFLWPE 906
Query: 871 IDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
DMPFS TG+RPD+IINPHAFPSRMTI ML+ES+AAK
Sbjct: 907 EDMPFSDRTGLRPDVIINPHAFPSRMTIGMLVESLAAK 944
>gi|383852408|ref|XP_003701720.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2-like
[Megachile rotundata]
Length = 1122
Score = 630 bits (1626), Expect = e-178, Method: Compositional matrix adjust.
Identities = 360/946 (38%), Positives = 544/946 (57%), Gaps = 96/946 (10%)
Query: 12 LRELVRHHIESFDYMLDEGLSE-------MFDH--------------------------- 37
L+ L HI+SF+YML++GLS+ ++ H
Sbjct: 25 LQSLGTPHIDSFNYMLEDGLSQAVQDNPLVYIHLPNENKVALWIDDVSIHQPIVPSGTIG 84
Query: 38 ----------CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQG 87
CRQ +Y GK+ + + ++ ER + G+ P+M+K+ RCHL
Sbjct: 85 VKNHKIYPTECRQRGCTYKGKITVKLGWS-VNGKLQETLER-DLGEIPIMIKSNRCHLHK 142
Query: 88 ADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAV 147
++L++ E E GGYFI+ GLER+ R +++ ++NYP+++ RS ++ R ++D +
Sbjct: 143 MSPKELIAHGEHEQEWGGYFIIKGLERIIRMLLMTRRNYPIAIKRSGWKARGVQFSDLGL 202
Query: 148 VIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTC 207
++R VR D ++ L+Y+++GS +L F + Y +P+ ++LK L+D +D+ I+N LT
Sbjct: 203 LLRSVRDDNTASNNTLHYVIDGSAKLMFTHRKVLYYVPLILILKCLIDASDIFIYNALTA 262
Query: 208 -CYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGL-QSE 265
C D+ Y K G + + +L + + +L + C +IG F+ L Q
Sbjct: 263 GCEDDPYYK--GCILN---------MLRAIHEQNLHSHEDCKTYIGRMFRIKFFELPQDA 311
Query: 266 SYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPG 325
+ V + +I+ I +HL++ DKF LL+FM +KLF+L ++ + D++ QE LL G
Sbjct: 312 TDTDVCDFIIKHCIAIHLDNPMDKFYLLVFMTKKLFALANNKCAVEGADAVMMQECLLGG 371
Query: 326 HLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETM 385
HL LKEKL WL K I + G ++ N+ + VM+ + + +E
Sbjct: 372 HLYLQVLKEKLYSWLNSLKMNILKRARSAGNRYTL-NVQEMLNVMKH--GNFLDSQMENF 428
Query: 386 LKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPES 445
L TG + + TGL L Q +G T+ AE +N +R++S FRA+HRG+ F +RTT R+LLP++
Sbjct: 429 LSTGNIKSSTGLGLMQSSGLTIVAENINRMRYMSHFRAIHRGSFFQEMRTTEARQLLPDA 488
Query: 446 WGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSL 505
WGF+CPVHTPDG PCGLLNH+T C + + D K++ +I +L+ +GMIP
Sbjct: 489 WGFICPVHTPDGAPCGLLNHLTMNCIITKHPDP--------KLKANIPIILMDLGMIPL- 539
Query: 506 PKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPL-S 564
+V + + + V+LDG+++G+I ++ I +V LR LK+ V P +E+ VP +
Sbjct: 540 -SIVDNWQNSYV-VMLDGKLIGLIDNNIISRVTDKLRLLKIKGEEV-PRIMEIVLVPKKN 596
Query: 565 LGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC--PDGGDGGRR 622
+ YPGLYLFT+ + +RPV N++ S+ IE IG FEQV++ I C P+ G
Sbjct: 597 VPAQYPGLYLFTNAARMMRPVMNLA-----SKKIEYIGTFEQVYLNI-CVTPEEAYEGL- 649
Query: 623 NAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKL 682
TH+E+ T LS +A+L P D NQSPRNMYQCQM KQTMG + +++ KL
Sbjct: 650 ----TTHQELSKTAFLSNLASLIPMPDCNQSPRNMYQCQMGKQTMGTPCHTWQLQSETKL 705
Query: 683 YHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHG 742
Y LQTP TP R Y K +D++ GTNAIVAV++YTGYDMEDAMI+NK++ DRG HG
Sbjct: 706 YRLQTPATPFFRPVHYDKINLDDFAMGTNAIVAVISYTGYDMEDAMIINKAAYDRGFAHG 765
Query: 743 QIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYD 802
IY++E +DL D + F RN D L + ID DGLP G +I G+ Y YD
Sbjct: 766 MIYKSEFVDLKDQ-------RSYFARNPDKPELAAKIDVDGLPVPGTIIKEGDIYYCYYD 818
Query: 803 KTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKG 862
+++ T G E +D V + ++P++A I FR +RNP +GDKF+SR GQKG
Sbjct: 819 ADQSTYVTGKYHGKEDAHIDNVKLCGTLHSHIPRRACITFRISRNPSVGDKFASRAGQKG 878
Query: 863 VCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
+CSQ WP D+PF+ TG+ PD++ NPH FPSRMTIAM++E +A K
Sbjct: 879 ICSQKWPAEDLPFTE-TGLIPDIVFNPHGFPSRMTIAMMIEVMAGK 923
>gi|380016936|ref|XP_003692423.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2-like [Apis
florea]
Length = 1122
Score = 629 bits (1621), Expect = e-177, Method: Compositional matrix adjust.
Identities = 360/947 (38%), Positives = 540/947 (57%), Gaps = 98/947 (10%)
Query: 12 LRELVRHHIESFDYMLDEGLSE-------MFDH--------------------------- 37
L+ L HI+SF+YML++GL + ++ H
Sbjct: 25 LQRLGAPHIDSFNYMLEDGLCKAVKDNPHVYIHLPNKDKVALWIDDVSIDQPSVPSGIIG 84
Query: 38 ----------CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQG 87
CRQ SY GK+ + + D ++ + G+ P+M+K+ +CHL
Sbjct: 85 VKTHKIYPTECRQRGCSYKGKITVKLGWSINDKLQEILAR--DLGEIPIMIKSNKCHLNK 142
Query: 88 ADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAV 147
+ + LV E E GGYF++ GLER+ R +++ ++NYP+++ RS ++ R ++D +
Sbjct: 143 MNPKDLVLHGEHEQEWGGYFVIKGLERIIRMLLMTRRNYPIAIKRSGWKTRGIQFSDLGL 202
Query: 148 VIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTC 207
+R VR D ++ L+Y+ +GS +L F + Y +P+ ++LK LVD +D+ I+N LT
Sbjct: 203 FLRSVRDDNTTANNTLHYVTDGSAKLMFSHKKVLYYVPLILILKCLVDVSDIFIYNALTA 262
Query: 208 -CYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGL-QSE 265
C + Y K G + + +L V + L +C +IG+ F+ L +
Sbjct: 263 GCESDLYYK--GCILN---------MLRAVHEQGLNNHEECKAYIGKMFRIKFFELPEDA 311
Query: 266 SYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPG 325
S V + +I+ I +HLN+ DKF LL FM +KLF+L ++ + DS+ QE LL G
Sbjct: 312 SDIDVCDFIIKHCIAIHLNNPLDKFYLLAFMTKKLFALANNKCAVEGADSVMMQECLLGG 371
Query: 326 HLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETM 385
HL LKEKL WL K I + G ++ N+ + VM+ S + + +E
Sbjct: 372 HLYLQVLKEKLYSWLTNLKMGILKRARSAGNRYTL-NVQEMLNVMKYGNS--LESQMENF 428
Query: 386 LKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPES 445
L TG L + TGL L Q G T+ AE +N +R++S FRA+HRG+ F +RTT R+LLP++
Sbjct: 429 LSTGNLRSSTGLGLMQNTGLTIVAENINRMRYMSHFRAIHRGSFFQEMRTTEARQLLPDA 488
Query: 446 WGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIP-S 504
WGF+CPVHTPDG PCGLLNH+T C + + D+ K++ +I +L+ +GMIP S
Sbjct: 489 WGFICPVHTPDGAPCGLLNHLTMNCIITKHPDA--------KLKANIPIILMDLGMIPLS 540
Query: 505 LPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPL- 563
+ K+ V+LDG+++G+I + I +V LR LK+ V P +E+ VP
Sbjct: 541 IADNWKNS----YIVMLDGKLIGLIDDNIITRVTDKLRLLKIKGQEV-PYMMEIALVPKK 595
Query: 564 SLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC--PDGGDGGR 621
++ YPGLYLFTSP + +RP+ N++ ++N+E IG FEQ++++I C P+ G
Sbjct: 596 TVPAQYPGLYLFTSPARMMRPIMNLA-----AKNVEYIGTFEQIYLDI-CVTPEEAYEGL 649
Query: 622 RNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQK 681
+H+E+ T LS +A+L P D+NQSPRNMYQCQM+KQTMG + +++ K
Sbjct: 650 -----TSHQELSKTAFLSNLASLIPMPDYNQSPRNMYQCQMSKQTMGTPCHTWQLQSETK 704
Query: 682 LYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCH 741
LY LQTP TP+ R + K +D++ GTNAIVAV++YTGYDMEDAMI+NK++ DRG H
Sbjct: 705 LYRLQTPATPLFRPVHHDKINLDDFAMGTNAIVAVISYTGYDMEDAMIINKAAYDRGFAH 764
Query: 742 GQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIY 801
G IY++E +DL D + F RN D L +D DGLP G +I G+ Y Y
Sbjct: 765 GLIYKSEFVDLKDQ-------KSYFARNPDKSELVEKLDIDGLPLPGTIISEGDVYYCYY 817
Query: 802 DKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQK 861
D +++ T G E +VD V + ++P++A I FR RNP +GDKF+SR GQK
Sbjct: 818 DADQSTYITGKYHGKEDAYVDTVKLCGTLHNHIPRRACITFRIPRNPSVGDKFASRAGQK 877
Query: 862 GVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
G+CSQ W D+PF+ TG+ PD++ NPH FPSRMTIAM++E +A K
Sbjct: 878 GICSQKWSAEDLPFTE-TGLIPDIVFNPHGFPSRMTIAMMIELMAGK 923
>gi|345484997|ref|XP_001606574.2| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 [Nasonia
vitripennis]
Length = 1122
Score = 626 bits (1615), Expect = e-176, Method: Compositional matrix adjust.
Identities = 360/949 (37%), Positives = 538/949 (56%), Gaps = 103/949 (10%)
Query: 12 LRELVRHHIESFDYMLDEGLSEMFDH---------------------------------- 37
L+ L HI+SF+Y L +GL+E D+
Sbjct: 25 LQRLGAPHIDSFNYALGQGLTEAIDNLLPVYLTLASGDRIELRIEDVTINHPTVPSGTIG 84
Query: 38 ----------CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQG 87
CRQ +Y GK+ A + + ++ ER + G+ P+M+K+ +CHL
Sbjct: 85 VKNHKIYPTECRQRAATYKGKINAKIGWS-INGRKQETVER-SLGEVPIMVKSNKCHLNN 142
Query: 88 ADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAV 147
+LV++KE E GGYFI+ G ER+ R +++ ++NYP+++ RS ++ R + ++D +
Sbjct: 143 MKPAQLVAVKEHEQEWGGYFIIKGHERLIRMLLMTRRNYPIAIKRSGWKQRGDQFSDLGI 202
Query: 148 VIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTC 207
++RCVR D ++ L+Y+ +GS +L F + Y +P+ ++LK L++ +D I+N LT
Sbjct: 203 LLRCVRDDNTATNNSLHYVTDGSAKLMFTHRKVLYYVPLILMLKCLMNVSDKYIYNALTA 262
Query: 208 -CYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQ-SE 265
C D+ Y K V ++ V + L + QC +IG+ F+ L +
Sbjct: 263 GCDDDVYYKNC-----------VLNMMRTVHEKDLHSHEQCKAYIGKMFRIKFYELPVNA 311
Query: 266 SYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPG 325
+ V + +I+ I +HL+D DKF+LL FM +KLF+L D+ + D++ QE LL G
Sbjct: 312 TDIEVCDFIIKYCIAIHLDDPADKFHLLCFMTKKLFALADNKCAVEGADAVMVQECLLGG 371
Query: 326 HLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGT---SI 382
HL +KEKL WL + +I +N G F N+++++ N K GT +
Sbjct: 372 HLYLQVIKEKLYSWLMGLRSVIVRRAKNVGNNFTL----NVQEML--NALKSCGTFDSQM 425
Query: 383 ETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLL 442
E L TG + +QTGL L Q G ++ AE +N +R++S FRA+HRG+ F +RTT R+LL
Sbjct: 426 ENFLATGNVRSQTGLGLMQSTGLSIVAENINRMRYMSHFRAIHRGSFFQEMRTTEARQLL 485
Query: 443 PESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMI 502
P++WGF+CPVHTPDG PCGLLNH+T C V + D K++ +I +L+ +GM
Sbjct: 486 PDAWGFICPVHTPDGAPCGLLNHLTMNCIVTKHPDP--------KLKNAIPTILLDLGM- 536
Query: 503 PSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVP 562
LP + +V+LDGRV+G+I + + +VV LR LK++ +P +E+ VP
Sbjct: 537 --LPMSIADDWKNSYTVVLDGRVIGLIEDNIVGRVVDKLRVLKINEK--VPPTMEIVLVP 592
Query: 563 L-SLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC--PDGGDG 619
++ YPG++LFT P + +RPV+N+S+ ELIG FEQV++ I C + D
Sbjct: 593 KKNVPSQYPGVFLFTGPTRMMRPVKNLSV-----NKTELIGTFEQVYLNI-CVTAEEADE 646
Query: 620 GRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRAD 679
G TH+E+ T LS +A L P D NQSPRNMYQCQM KQTMG + +A+
Sbjct: 647 GL-----TTHQELSKTTFLSNLACLIPMPDCNQSPRNMYQCQMGKQTMGTPCLTWQQQAE 701
Query: 680 QKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGM 739
KLY LQTP TP+ R + +DE+ GTNAIVAV++YTGYDMEDAMI+NKS+ +RG
Sbjct: 702 TKLYRLQTPSTPLFRPVHHDNINLDEFAMGTNAIVAVISYTGYDMEDAMIINKSAYERGF 761
Query: 740 CHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCS 799
HG IY++E I+L + + F R+ + L +DSDGLP G ++ G+PY S
Sbjct: 762 AHGMIYKSEFIELKEQSD-------YFARDPNRADLVDKLDSDGLPNPGTILQEGDPYYS 814
Query: 800 IYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHG 859
Y ++ KG E+ FVD + + + K I R +RNP +GDKF+SR G
Sbjct: 815 YYQVDHKTFLIGKYKGKEAAFVDNIKLCGSLQSSTKGKVCITLRISRNPSVGDKFASRAG 874
Query: 860 QKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
QKG+CSQ WP D+PF+ TG+ PD++ NPH FPSRMTIAM++E +A K
Sbjct: 875 QKGICSQKWPAEDLPFTE-TGLIPDIVFNPHGFPSRMTIAMMIEVMAGK 922
>gi|312074086|ref|XP_003139812.1| DNA-directed RNA polymerase [Loa loa]
Length = 916
Score = 626 bits (1615), Expect = e-176, Method: Compositional matrix adjust.
Identities = 358/881 (40%), Positives = 515/881 (58%), Gaps = 60/881 (6%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CRQ ++Y G L ++E G+ + G+ P+MLK+ RCHL+ ++L++
Sbjct: 73 CRQRGLTYRGPLKVNIEICL--NGAKMDFCEVIVGEVPIMLKSNRCHLRWLTREQLIAHG 130
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
EE E GGYFI G E+V R ++ ++NYP+ +VR SFR++ +T V+IRCVR + S
Sbjct: 131 EEGTEKGGYFICKGNEKVIRLLVANRRNYPIGLVRHSFREKGSLFTQYGVMIRCVRGNYS 190
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
+ + L+YL +G++ + + + + LP V+K+L ND I H+ C
Sbjct: 191 AAMMTLHYLESGTIVIALQYRRELFYLPFMYVIKSLTSMNDQCIMEHMIRCRP------- 243
Query: 218 GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETV--- 274
G V +LA D + + L IGE F+ + + V+E V
Sbjct: 244 ---GDHFWKGCVTTMLALCSDDGIVNQKAALTAIGERFR--VATQDRVGPWEVSEDVGRF 298
Query: 275 -IRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLK 333
+R + +HL+++ DKF LL +M QKL +L +++PD+ Q QE + GH++ + ++
Sbjct: 299 LLRVCVAIHLDNDEDKFFLLSYMAQKLIALTKGECAAESPDNPQFQEAAVSGHILLLIIR 358
Query: 334 EKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLAT 393
E+LE+ L ++ I+ E + + F + + + M S +I +E L TG L +
Sbjct: 359 ERLENTLNIARRKIELEAKRKAESF-LLSSHELIRAMGTQRSGEITRGLEYFLATGNLIS 417
Query: 394 QTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVH 453
+ GL LQQ G++V AER+N LRF+S FRA+HRGA F +RTT VRKL PE+WGF+CPVH
Sbjct: 418 RGGLTLQQNNGFSVIAERINQLRFVSHFRAIHRGAFFMEMRTTDVRKLRPEAWGFICPVH 477
Query: 454 TPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIG-VGMIP-SLPKLVKS 511
TPDG PCGLLNH+ ++ R+ ++Y + TS L L+G +GM+ S L+ +
Sbjct: 478 TPDGAPCGLLNHVAASVRIVTHYSN-----------TSELPKLLGELGMVGHSAITLLPA 526
Query: 512 GPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYV-----PLSLG 566
P + VL+DG+ VG I S+ V LR LKVS +P E+ V P+++
Sbjct: 527 EP--MYPVLVDGKFVGHISQSQASYVEQQLRVLKVSDDIRVPSCAEIILVEKSIDPINIL 584
Query: 567 GAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFP 626
YPGLY+FT P +RPV+ LPS+ +E IG FEQV++ I C D +
Sbjct: 585 VQYPGLYIFTEPGHLMRPVK--YLPSDR---VEFIGTFEQVYLSI-CIDPEEA---EPNV 635
Query: 627 ATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQ 686
H+EIHP+ + S ANL P+ DHNQSPRN+YQCQM KQTMG V A +RAD K+Y LQ
Sbjct: 636 TMHQEIHPSCLFSFAANLIPFPDHNQSPRNVYQCQMGKQTMGTPVHAWNYRADNKMYRLQ 695
Query: 687 TPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQ 746
PQ PIV+ Y KYGIDEYP GTNA VAV++YTGYDMEDAM++NKSS +RG HG + +
Sbjct: 696 FPQNPIVKPEPYEKYGIDEYPLGTNACVAVISYTGYDMEDAMVINKSSYERGFAHGSVIK 755
Query: 747 TETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTN 806
E ++L++ R + D ++ ID DGLP G++ G+PY S+YD TN
Sbjct: 756 VERVNLTE-----GRSAECPIFLCDPENPQKTIDLDGLPIPGRLYMEGDPYYSVYDIDTN 810
Query: 807 SWRTNSRKGSESVFVDYVAVDMKNSKNLPQK-----ANIRFRHTRNPIIGDKFSSRHGQK 861
S++ + K +E+ F V + ++ +N+ A I++R RNPIIGDKF+SRHGQK
Sbjct: 811 SYKIHKYKYAEAAFCGSVRI-VEEGENVGANKGKCHALIQWRTRRNPIIGDKFASRHGQK 869
Query: 862 GVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLL 902
G+ S LWP MPFS +GM PD+I NPH FPSRMTI M L
Sbjct: 870 GINSFLWPTESMPFSE-SGMVPDIIFNPHGFPSRMTIGMFL 909
>gi|358379516|gb|EHK17196.1| hypothetical protein TRIVIDRAFT_183490 [Trichoderma virens Gv29-8]
Length = 1198
Score = 625 bits (1611), Expect = e-176, Method: Compositional matrix adjust.
Identities = 365/884 (41%), Positives = 516/884 (58%), Gaps = 90/884 (10%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR+ +Y GKL A F+Y G VV GQ P+M+K+ RCHL+ LVS K
Sbjct: 118 CRERHATYRGKLSA--TFEYSINGGDVVEFTRELGQVPIMIKSNRCHLENNSPALLVSRK 175
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
EE+ E+GGYFI+NG E++ R + + K+N+PM++ R SF +R GYT +++R VR D++
Sbjct: 176 EESEELGGYFIVNGNEKIIRLLQVNKRNFPMAINRPSFTNRGAGYTTYGIILRSVRPDET 235
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
S T L+YL +G+V F + EYL+PV ++LKALV+TND EIF L K
Sbjct: 236 SQTNVLHYLKDGNVTFRFSWRKNEYLIPVIMILKALVETNDREIFEGLIGPMGSK----- 290
Query: 218 GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRD 277
A + +++RV+++L + L ++ + ++G+ F+ V+ ++ S Y V +R
Sbjct: 291 -AAQNTFLTDRVELLLRTYKAYRLYSKSETRAYLGQKFRVVLGVPETMSDYEVGTEFLRK 349
Query: 278 YIFVHLNDNN-------DKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITI 330
+ VHL + + DKF++++FM++KL++L DNPD++QNQEILL G L +
Sbjct: 350 IVCVHLGNVDVTEKQDLDKFHMVLFMIRKLYALAAGECAVDNPDAIQNQEILLGGFLYSQ 409
Query: 331 YLKEKLEDWLRKG-KKLIQDEIENNGKKFDFFNLANIKKVME----KNPSKQIGTSIETM 385
LKE+L+++L + I+D + + F +K + ++ I +E
Sbjct: 410 ILKERLDEFLSVSVRTAIRDYLRRHPAVS--FTSEEFRKEFPGGIFRKSNENIANGLEYF 467
Query: 386 LKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPES 445
L TG L + +GLDLQQ AG+TV AE+LNFLRFIS FR VHRGA FA L+TT+VRKLLPES
Sbjct: 468 LSTGNLVSASGLDLQQTAGFTVVAEKLNFLRFISHFRMVHRGAFFAQLKTTAVRKLLPES 527
Query: 446 WGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSL 505
WGF+CPVHTPDG PCGLLNHMT C++ + Y NI V + ++
Sbjct: 528 WGFMCPVHTPDGSPCGLLNHMTHKCKIMTDYVDVSNIPAL-------------VAELGAV 574
Query: 506 PKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSL 565
S +V+ V+LDG+++G E ++ LR KV + +P LEVGYVP S
Sbjct: 575 ETSSASTDESVV-VMLDGKIIGWSTPKESLRIGDCLRYWKVEGSHNVPLQLEVGYVPPSN 633
Query: 566 GGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRNA 624
GG+YPGLYL ++P + VRPV+ + L E+ +GP EQ +M I P + G
Sbjct: 634 GGSYPGLYLTSTPSRMVRPVKYLPLQKED-----YVGPHEQPYMSIAVVPQEIESGV--- 685
Query: 625 FPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYH 684
+TH E PT MLS++AN+TP+SD NQSPRNMYQCQM KQTMG A++ R D K Y
Sbjct: 686 --STHVEFDPTNMLSILANMTPFSDFNQSPRNMYQCQMGKQTMGTPGTAIRHRTDNKSYR 743
Query: 685 LQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQI 744
+QT QTPIVR + YG D +P G NA+VAV++YTGYDM+DAMI+NKS+ +RG HG +
Sbjct: 744 IQTGQTPIVRAPLHNTYGFDNFPNGMNAVVAVISYTGYDMDDAMIINKSAHERGFGHGTV 803
Query: 745 YQTETIDLSDDGNKVDRGQKLFRRNKDAKSL--------HS--------VIDSDGLPYVG 788
Y+T+ I L DD R + AKS+ HS ++D DGLP+VG
Sbjct: 804 YKTKKITLKDDS-----------RTRAAKSVVKMFGFAPHSYVSAAYQGMLDDDGLPHVG 852
Query: 789 QMIHPGEPYCSIYDKTTNSWRTN-----------SRKGSESVFVDYVAVDMKNSKNLP-Q 836
+M+ + C+ + T + N K SE F++ V + S + P Q
Sbjct: 853 RMVKEDDVLCA-WHTVTPDYNGNLVNLDGITHYEKYKDSEIGFIEEVRLIGAESGSEPLQ 911
Query: 837 KANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTG 880
+I+ R R+P+IGDKFSSRHGQKGV SQ WP M +G G
Sbjct: 912 TISIKIRIPRSPVIGDKFSSRHGQKGVLSQKWP---MSLAGKAG 952
>gi|321453922|gb|EFX65117.1| hypothetical protein DAPPUDRAFT_333503 [Daphnia pulex]
Length = 1153
Score = 624 bits (1610), Expect = e-176, Method: Compositional matrix adjust.
Identities = 341/880 (38%), Positives = 505/880 (57%), Gaps = 50/880 (5%)
Query: 38 CRQAKISYTGKLMADVEFQYLDA--GSPVVRERFN--FGQFPVMLKTRRCHLQGADSQKL 93
CR +Y GKL V + G + + F G+ PVM+++ C+L G ++L
Sbjct: 104 CRMRNSTYKGKLFVQVGWSISKTPEGPLIAQVPFERCLGEIPVMIQSELCNLSGLSPKEL 163
Query: 94 VSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVR 153
VS E E GGYF++ G ER+ R + ++NYPM++ R ++ R + +TDK V IRCV+
Sbjct: 164 VSKGEHEQEWGGYFVVKGHERILRMISATRKNYPMTVQRDVWKRRGKLFTDKGVFIRCVK 223
Query: 154 KDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKY 213
+D ++ L+YL NG++RL F + Y+ P+ +VLKAL++ D I+ L
Sbjct: 224 EDMTATNNVLHYLSNGTMRLMFNFKKILYVFPLMLVLKALINCTDSYIYEQLV------- 276
Query: 214 KKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYA---V 270
+G G +R+ ++L ++QD L T IG +F+ L +Y V
Sbjct: 277 ---QGLEGDIYYKDRIVLMLRQLQDEGLYTHEHVRNFIGRNFRAKFTDL--PKWYTDEQV 331
Query: 271 AETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITI 330
+ ++ + + HL DN DKFNLL+FM +KLF+ + D + QEI LPGHL
Sbjct: 332 CKFLLENSVLFHLKDNKDKFNLLVFMARKLFAFAYGKCALEGMDPVMMQEISLPGHLYLQ 391
Query: 331 YLKEKLEDWLRKGKKLI--QDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKT 388
+K++L WL K +I ++ + N F L + + + + S +I ++IE + T
Sbjct: 392 LVKDRLASWLTVVKYVILKRERMTKN------FVLTSSEMGIALSKSGKIDSAIENVFAT 445
Query: 389 GRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGF 448
G L L + Q G ++ AE +N +R++S FRAVHRGA F R++ VR+L P++WGF
Sbjct: 446 GNLPGTADLGMNQNTGLSIMAENINHMRYMSHFRAVHRGAVFMDSRSSEVRQLKPDAWGF 505
Query: 449 LCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKL 508
LCPVHTPDG PCGLLNH+++TC V + +D S + T +L+ +GM P +
Sbjct: 506 LCPVHTPDGSPCGLLNHLSATCHVVN------TTQDTSGIPT----LLVALGMTPVEETI 555
Query: 509 VKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGA 568
+ V+L+GRV+G + + V LR LKV A +P LE+ +VP +L G
Sbjct: 556 HNNNYSECYVVMLEGRVLGRVGDRSATRFVDKLRMLKVRGAENVPKTLEIAFVPRTLNGQ 615
Query: 569 YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPAT 628
YPG+YLFT+ + +RPV NI+ + +EL+G FEQV++ I + D F T
Sbjct: 616 YPGIYLFTASARMMRPVYNIA-----AGTVELVGTFEQVYLNICVTE--DENENGIF--T 666
Query: 629 HEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTP 688
H+E+ T LS +A L P D NQSPRNMYQCQM KQTMG V +F+ + KLY LQTP
Sbjct: 667 HQELSETSFLSNLACLIPLPDFNQSPRNMYQCQMGKQTMGTPVHNWRFQTNSKLYRLQTP 726
Query: 689 QTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTE 748
TP+ R + + +D++ GTNAIVAV++YTGYDMEDAM++N++S+ RG HGQ+Y ++
Sbjct: 727 TTPLFRPAHWDRINMDDFAMGTNAIVAVISYTGYDMEDAMVINRASLQRGFAHGQVYTSK 786
Query: 749 TIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSW 808
IDL + G R F+R+ L +D DGLPY G ++ +PY D T +
Sbjct: 787 VIDLKEIGKGNSR---YFKRDPANDDLKEFLDEDGLPYPGILLQERDPYYCYLDVETAKY 843
Query: 809 RTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLW 868
KG+E+++V + + + + K I FR RNP IGDKF+SR GQKG+CSQ W
Sbjct: 844 SVAKYKGTEAMYVANINIIGADWMSGMNKVTITFRIPRNPQIGDKFASRAGQKGICSQQW 903
Query: 869 PDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
D+P++ +GM PD++ NPH FPSRMTIAM++E +A K
Sbjct: 904 LAEDLPWTE-SGMIPDIVFNPHGFPSRMTIAMMIECMAGK 942
>gi|350399850|ref|XP_003485659.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2-like [Bombus
impatiens]
Length = 1122
Score = 623 bits (1606), Expect = e-175, Method: Compositional matrix adjust.
Identities = 356/946 (37%), Positives = 538/946 (56%), Gaps = 96/946 (10%)
Query: 12 LRELVRHHIESFDYMLDEGLSE-------MFDH--------------------------- 37
L+ L HI+SF+YML++GLSE ++ H
Sbjct: 25 LQSLGAPHIDSFNYMLEDGLSEAVRDNPLVYIHLPNEDKIALWIDDVSIHQPSIPSGAIG 84
Query: 38 ----------CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQG 87
CRQ +Y GK++ + + ++ ER + G+ P+M+K+ RCHL
Sbjct: 85 VKNHKIYPTECRQRGCTYKGKIIVKLGWS-INNKVQETLER-DLGEIPIMIKSNRCHLSK 142
Query: 88 ADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAV 147
+ LV+ E E GGYFI+ GLER+ R +++ ++NYP+++ RS ++ R ++D +
Sbjct: 143 MSPKDLVAHGEHEQEWGGYFIIKGLERIIRMLLMTRRNYPIAIRRSGWKARGIQFSDLGL 202
Query: 148 VIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTC 207
++R VR D ++ L+Y+ +GS +L F + Y +P+ ++LK LVD +D+ I++ LT
Sbjct: 203 LLRSVRDDNTTANNTLHYVTDGSAKLMFSYRKVLYYVPLILMLKCLVDVSDIFIYSALTA 262
Query: 208 -CYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSES 266
C D+ Y K G + + +L V + L + +C +IG F+ + L ++
Sbjct: 263 GCEDDLYYK--GCILN---------MLRAVHEQGLNSHEECKAYIGRMFRIKLFELPYDA 311
Query: 267 Y-YAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPG 325
V + +I+ I +HL+D DKF LL FM +KLF+L ++ + D++ QE LL G
Sbjct: 312 TDIDVCDFIIKHCIAIHLHDPLDKFYLLAFMTKKLFALANNKCAVEGADAVMMQECLLGG 371
Query: 326 HLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETM 385
HL LKE+L WL K I + G ++ N+ + M+ S ++ +E
Sbjct: 372 HLYLQVLKERLYSWLTGLKMGILKRARSAGNRYTL-NVQEMLNAMKHGNSLEL--QMENF 428
Query: 386 LKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPES 445
L TG L + TGL L Q G T+ AE +N +R++S FRA+HRG+ F +RTT R+LLP++
Sbjct: 429 LSTGNLRSPTGLGLMQNTGLTIVAENINRMRYMSHFRAIHRGSFFQEMRTTEARQLLPDA 488
Query: 446 WGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSL 505
WGF+CPVHTPDG PCGLLNH+T C + + + K++ ++ +L+ +GMIP
Sbjct: 489 WGFICPVHTPDGAPCGLLNHLTMNCIITKHTNP--------KLKANVPIILMDLGMIPLS 540
Query: 506 PKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPL-S 564
+ V+LDG+++G+I + I +V LR LK+ V P +E+ VP +
Sbjct: 541 ---IADNWKKSYIVILDGKLIGLIDDNIISRVTDKLRLLKIKGQEV-PCTMEIALVPKKN 596
Query: 565 LGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC--PDGGDGGRR 622
+ YPGLYLFT+P + +RPV N++ ++ +E IG FEQ+++ I C P+ G
Sbjct: 597 VPAQYPGLYLFTNPARMMRPVMNLA-----AKKVEYIGTFEQIYLNI-CVTPEEAYEGL- 649
Query: 623 NAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKL 682
+H+E+ T LS +A+L P D NQSPRNMYQCQM KQTMG + +++ KL
Sbjct: 650 ----TSHQELSKTAFLSNLASLIPMPDCNQSPRNMYQCQMGKQTMGTPCHTWQLQSETKL 705
Query: 683 YHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHG 742
Y LQTP TP+ R Y + +D++ GTNAIVAV++YTGYDMEDAMI+NK++ DRG HG
Sbjct: 706 YRLQTPATPLFRPVHYDEINLDDFAMGTNAIVAVISYTGYDMEDAMIINKAAHDRGFAHG 765
Query: 743 QIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYD 802
IY++E +DL D + F RN D L +D DGLP +G MI G+ Y YD
Sbjct: 766 LIYKSEFVDLKDQ-------KSYFARNPDKPDLAEKLDVDGLPILGTMISEGDVYYCYYD 818
Query: 803 KTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKG 862
+++ T G E +VD V + ++P++A I FR RN +GDKF+SR GQKG
Sbjct: 819 ADQSTYVTGKYHGKEDAYVDTVKLCGTLHSHIPRRACITFRIPRNANVGDKFASRAGQKG 878
Query: 863 VCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
+CSQ WP D+PF+ TG+ PD++ NPH FPSRMTIAM++E +A K
Sbjct: 879 ICSQKWPAEDLPFTE-TGLIPDIVFNPHGFPSRMTIAMMIEVMAGK 923
>gi|154274906|ref|XP_001538304.1| DNA-directed RNA polymerase I polypeptide 2 [Ajellomyces capsulatus
NAm1]
gi|150414744|gb|EDN10106.1| DNA-directed RNA polymerase I polypeptide 2 [Ajellomyces capsulatus
NAm1]
Length = 1214
Score = 621 bits (1602), Expect = e-175, Method: Compositional matrix adjust.
Identities = 362/908 (39%), Positives = 522/908 (57%), Gaps = 103/908 (11%)
Query: 37 HCRQAKISYTGKLMADVEFQYLDA-GSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVS 95
CR+ +Y G+L A +E++ + VRE GQ P+ML++ RCHL+ ++LV
Sbjct: 126 ECRERHATYRGRLRARLEYRVNNGEWKESVRE---LGQVPIMLRSNRCHLEKCSPEQLVQ 182
Query: 96 LKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKD 155
KEE+ E+GGYFI+NG E++ R +I+ ++N+PM+++RSSF R + YT + IR VR D
Sbjct: 183 RKEESEELGGYFIVNGNEKLIRMLIVGRRNFPMAIIRSSFTKRGQTYTKYGIQIRSVRAD 242
Query: 156 QSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKK 215
Q+S T L+YL +G+V F + EYL+PV ++LKALV+TND EIF L ++
Sbjct: 243 QTSQTNVLHYLSDGNVTFRFSWRKNEYLVPVVMILKALVETNDREIFERLVG------RE 296
Query: 216 EKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVI 275
+ + V++RV+++L + L R ++GE F+PV+ V +
Sbjct: 297 GSEGIKNSFVTDRVELLLRTYKGYKLYGRDDTRAYLGEKFRPVLGMPADIPDDMVGAEFL 356
Query: 276 RDYIFVHLND-------NNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLI 328
R + HL + +NDKFN+++FM++KL++LV DNPD++ NQE+LL G L
Sbjct: 357 RKVVLPHLGNQNVTESQDNDKFNMILFMIRKLYTLVAGECAPDNPDAVSNQEVLLGGSLY 416
Query: 329 TIYLKEKLEDWLRKGKKLIQD-EIENNGKKFD--FFNLANIKKVMEKNPSKQIGTSIETM 385
+ LKE+LE+WLR + +D N +F F + +++ + ++ IG ++E
Sbjct: 417 GMLLKERLEEWLRAFGPIARDWSFRNQNARFSDPRFEKEFLSRIVSRT-NENIGGALEYF 475
Query: 386 LKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPES 445
L TG L + TGLDLQQ +GYTV AE++NF RFIS FR +HRG+ FA L+TT+V P
Sbjct: 476 LSTGNLVSPTGLDLQQPSGYTVIAEKINFYRFISHFRMIHRGSFFAQLKTTTV----PHK 531
Query: 446 WGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSL 505
C + T + + G+ ++ + Y+S ++ +
Sbjct: 532 ----CEIATSNLDVSGVPQLISD---LGVTYESSVSLDE--------------------- 563
Query: 506 PKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSL 565
+ V LDGR++G + + LR KV+ +P +LE+GY+P S
Sbjct: 564 ----------CVVVQLDGRILGYCSPKQARMISDTLRYWKVAGNKSLPVELEIGYIPNSN 613
Query: 566 GGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRNA 624
G YPG+YLF+ + +RPVR + L ++ +GPFEQ FMEI C P G
Sbjct: 614 RGQYPGIYLFSQCARMMRPVRYLPL-----DKLDYVGPFEQPFMEIACVPSDIMSG---- 664
Query: 625 FPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYH 684
+TH E PT +LS+VAN+TP+SD NQSPRNMYQCQM+KQ MG ++++R D KLY
Sbjct: 665 -ISTHVEFDPTHILSIVANMTPFSDFNQSPRNMYQCQMSKQAMGTPGASIEYRTDNKLYR 723
Query: 685 LQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQI 744
LQT QTP+VRT Y YG+D +P G NA+VAVL+YTGYDM+DAMI+NKS+ DRG G I
Sbjct: 724 LQTGQTPVVRTPLYNSYGLDNFPNGMNAVVAVLSYTGYDMDDAMIINKSAHDRGFGWGTI 783
Query: 745 YQTETIDLSDDGNKVDRGQKLFRRNKD-----------AKSLHSVIDSDGLPYVGQMIHP 793
Y+T+ L D K RG+ RR +D DGLP++G +
Sbjct: 784 YKTKIYSLDD---KESRGRGKARREVSKLFGFAPGSLIKGEWRHALDEDGLPHIGARVTE 840
Query: 794 GEPYCSI----YDKTTNSWRTN--------SRKGSESVFVDYVAVDMKNSKNLP-QKANI 840
G + +D +NS+ TN K +E ++D V + + P Q ++
Sbjct: 841 GSIVAAWHTVRFDPVSNSY-TNIDGQTHLLKYKDTEEGYIDNVRILGSETGGDPCQAISV 899
Query: 841 RFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAM 900
+FR R P+IGDKFSSRHGQKGVCSQLWP IDMPFS TG++PD+IINPHAFPSRMTI M
Sbjct: 900 KFRVPRKPVIGDKFSSRHGQKGVCSQLWPAIDMPFS-ETGIQPDIIINPHAFPSRMTIGM 958
Query: 901 LLESVAAK 908
+ES+A K
Sbjct: 959 FIESLAGK 966
>gi|390339123|ref|XP_790504.3| PREDICTED: DNA-directed RNA polymerase I subunit RPA2-like
[Strongylocentrotus purpuratus]
Length = 1218
Score = 619 bits (1597), Expect = e-174, Method: Compositional matrix adjust.
Identities = 385/1019 (37%), Positives = 547/1019 (53%), Gaps = 161/1019 (15%)
Query: 12 LRELVRHHIESFDYMLDEGLSEMF------------------------------------ 35
L + VR HIESF+YMLD+GL++
Sbjct: 50 LEDAVRPHIESFNYMLDDGLAQAVRNITPLEFLLDDERISLSYEDASVGVPTVARGNLFA 109
Query: 36 -------DHCRQAKISYTGKLMADVEFQYL--DAGSPVVRERFNFGQFPVMLKTRRCHLQ 86
RQ +Y L A V +Q D+GS V+R GQ P+++K + C+L
Sbjct: 110 STLKVYPSESRQRGTTYQAPLQARVHWQSGNGDSGS-VMRP---LGQIPLLVKCKNCNLY 165
Query: 87 GADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKA 146
+LV KEE+ EMGGYFI NG+E+V R +++P++N+PM++ RS ++ R +G+T+
Sbjct: 166 NLSPSELVKRKEESCEMGGYFIANGIEKVIRMLVMPRRNFPMAINRSKWKTRGKGFTEFG 225
Query: 147 VVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLT 206
V +RCVR DQS VT+ L+YL GS+ + F + + LP+ +VL+ALVDT+D +++ L
Sbjct: 226 VQMRCVRNDQSIVTITLHYLTTGSIVVSFAYNKEIFFLPLLLVLRALVDTSDQHVYDELV 285
Query: 207 CCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSES 266
KG + V +L + Q +L+++ Q L+HIGE F+ + +
Sbjct: 286 ----------KGKEKDTFLIGCVTGMLRQTQTQNLSSQEQALEHIGERFRIKLSVPPWHT 335
Query: 267 YYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGH 326
A+ +++ I VHL+ N DKFN L FM +KLF+ ++N DS NQE+LL GH
Sbjct: 336 NVQTAKFLLQQCICVHLDSNQDKFNTLAFMARKLFAFNQGECAAENADSPMNQEVLLAGH 395
Query: 327 LITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIK-KVMEKNPSKQIGTSIETM 385
L + LKEKLE WL ++ IE KK F L ++ + +E +
Sbjct: 396 LYLMVLKEKLEGWLVN----LRYAIEKQAKKSRRFVLNDVSLNTAASTGPGDLTRKMEYL 451
Query: 386 LKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPES 445
+ TG LA++TGL L Q +G TV A++LNF+RF+S FR +HRG+ FA +RTTSVRKLLPE+
Sbjct: 452 IATGNLASKTGLGLMQTSGMTVVADKLNFMRFLSHFRCIHRGSFFAEMRTTSVRKLLPEA 511
Query: 446 WGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIP-- 503
WGFLCPVHTPDG PCGL+NH+T+ C+V + + +++ L +GMIP
Sbjct: 512 WGFLCPVHTPDGAPCGLMNHLTALCQVV----------NTQPLTLPLVKTLYALGMIPLD 561
Query: 504 -SLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVP 562
LP V V+LDGRV+G +P ++ + L+ LKV S + E+ VP
Sbjct: 562 APLPCPVS----GCYEVVLDGRVLGYVPQDIATQLTSRLKILKVKGQSGVTPTTEIVLVP 617
Query: 563 LS-LGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGG 620
++ GG YPGLY+FT+P + RPVRN++L Q E IG FEQV+M+I P
Sbjct: 618 VTGKGGQYPGLYIFTTPTRLYRPVRNLAL-----QETEYIGTFEQVYMDIAVTPSEIHEK 672
Query: 621 RRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQ 680
TH E++ + +LSV A+LTP+SD NQSPRNMYQCQM KQTMGF L FR D
Sbjct: 673 VCRTLITTHLELNESSILSVSASLTPFSDFNQSPRNMYQCQMGKQTMGFPSHTLPFRIDH 732
Query: 681 KLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTG----YDMEDAMILNKSSV- 735
K+Y LQTPQTP+VR + Y KY D+YP GTNA+VAV++YT Y + +++ V
Sbjct: 733 KMYKLQTPQTPMVRPHAYDKYDFDDYPLGTNAVVAVISYTTKIEKYKGSEVAVVDNVKVT 792
Query: 736 ---------------------------------DRGMCHGQIYQTETIDLSDDG------ 756
+G+C Q + TE + ++ G
Sbjct: 793 GNDLGNQVCQRAFIQLRIQRNPIIGDKFSSRHGQKGVC-SQRWPTEDMPFTESGMTPDIL 851
Query: 757 -------NKVDRGQKLFRRNKDAKSLHSVI----------DSDGLPYVGQMIHPG----- 794
+++ G + + SLH + + + Y G+++ G
Sbjct: 852 FNPHGFPSRMTIGMMIESMAGKSASLHGLCHDATPFTFSEEQPAVDYFGKLLTAGYFHHS 911
Query: 795 --EPY--CSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKN-LPQKANIRFRHTRNPI 849
P+ C + + KGSE VD V V + N + Q+A I+ R RNPI
Sbjct: 912 YVNPHFKCRYTRLDSGQTKIEKYKGSEVAVVDNVKVTGNDLGNQVCQRAFIQLRIQRNPI 971
Query: 850 IGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
IGDKFSSRHGQKGVCSQ WP DMPF+ +GM PD++ NPH FPSRMTI M++ES+A K
Sbjct: 972 IGDKFSSRHGQKGVCSQRWPTEDMPFTE-SGMTPDILFNPHGFPSRMTIGMMIESMAGK 1029
>gi|324502024|gb|ADY40894.1| DNA-directed RNA polymerase I subunit RPA2 [Ascaris suum]
Length = 1163
Score = 619 bits (1597), Expect = e-174, Method: Compositional matrix adjust.
Identities = 356/959 (37%), Positives = 535/959 (55%), Gaps = 111/959 (11%)
Query: 14 ELVRHHIESFDYMLDEGL--------SEMF------------------------------ 35
E+ +H+ SFDY+ DEG+ +E F
Sbjct: 39 EIASYHVGSFDYLADEGVHLAAVDVPTEKFRLPNGEAVEMKYTGAQLGYPALETSSGLTS 98
Query: 36 ---------DHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQ 86
CRQ ++Y L A +E + + G+ PVML + RCHL+
Sbjct: 99 SIDAMKIYPSECRQRGMTYRAPLKASIEIRINGVRAECCEA--ILGEVPVMLMSSRCHLK 156
Query: 87 GADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKA 146
G +LV+ EEA E GGYFI+ G E+V R ++ ++N+P+++VR SFRD+ + +T
Sbjct: 157 GLSRSQLVARGEEATEKGGYFIVKGSEKVIRLLVANRRNFPIALVRRSFRDKGKLFTQYG 216
Query: 147 VVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLT 206
V++RC++++ S+ + ++YL G++ + + + + +P+ +LKALV ND I +HL
Sbjct: 217 VMMRCIKENHSAAMITMHYLETGAITVAVQYRRELFYIPLMYILKALVPMNDACIRDHLV 276
Query: 207 CCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQS-- 264
+ + V +LA Q+ +T + L +G F+ ++
Sbjct: 277 ----------RARPNDHFWANCVTSMLALCQEDGITNQEAALTVLGSRFRVALEDRVGPW 326
Query: 265 ESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLP 324
ES V ++R + +HL+DN +KF +L++M QKL +LV + PD+ Q QE L
Sbjct: 327 ESSSDVGRFLLRACVAIHLSDNEEKFFILVYMAQKLIALVKGECAPETPDNPQFQETALS 386
Query: 325 GHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLAN--IKKVMEKNPSKQIGTSI 382
GH++ + ++E++E+ L ++ I+ E + +K D FNL + + + + S +I +
Sbjct: 387 GHILLLIIRERMENILGVVRRKIEFEAK---RKADTFNLTSREVLRAFGSHRSGEISRGL 443
Query: 383 ETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLL 442
E L TG L T+TGL LQQ G++V AER+N LRF+S FRA+HRGA F +RTT VRKL
Sbjct: 444 EYFLATGNLLTRTGLALQQNNGFSVIAERINQLRFVSHFRAIHRGAFFMEMRTTDVRKLR 503
Query: 443 PESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLI----G 498
PE+WGF+CPVHTPDG PCGLLNH+T++ R+ ++Y S +M + + +
Sbjct: 504 PEAWGFICPVHTPDGAPCGLLNHVTASVRIVTHYSS------LKQMPALLAELGVLSHSA 557
Query: 499 VGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASV-IPDDLE 557
V ++P+ + VLLDGR VG +P S+ V LR +KV +P E
Sbjct: 558 VALMPT---------DEMYPVLLDGRFVGYVPRSKAAYVEKQLRAVKVDRNDRRVPYVSE 608
Query: 558 VGYV-----PLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIR 612
+ V P+++ YPGL + T P + +RPV+N++ + E IG FEQV++ I
Sbjct: 609 IALVRHSSDPVNIQTQYPGLCIMTDPARMIRPVKNLA-----ANATEFIGTFEQVYLSI- 662
Query: 613 C--PDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFS 670
C PD + G H+E+HP+ + S NL P+ DHNQSPRN+YQCQM KQTMG
Sbjct: 663 CIEPDEAEPG-----VTMHQELHPSCLFSFAGNLIPFPDHNQSPRNVYQCQMGKQTMGTP 717
Query: 671 VQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMIL 730
V A RAD K+Y LQ PQ+P+++ Y KY +DEYP GTNA VAV++YTGYDMEDAM++
Sbjct: 718 VHAWSHRADNKMYRLQFPQSPLLKPEAYDKYEMDEYPLGTNACVAVISYTGYDMEDAMVI 777
Query: 731 NKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQM 790
NKSS RG HG + + E ++L +G ++ +F + K+ I DGLP G++
Sbjct: 778 NKSSFQRGFAHGTVIKVERVNL-QEGRSIN--SDVFMNDPTKKT--PSIGEDGLPIPGRL 832
Query: 791 IHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQ-KANIRFRHTRNPI 849
G+PY ++ T ++T+ K +E + V + + + A I++R RNPI
Sbjct: 833 YMEGDPYYTVLSLDTGVYKTHHFKYAEPAYCGIVRIVEEGGMTRGKCHALIQWRIQRNPI 892
Query: 850 IGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
IGDKF+SRHGQKG+ S LWP MPFS +GM PD+I NPH FPSRMTI M++ES+A K
Sbjct: 893 IGDKFASRHGQKGINSFLWPAESMPFSE-SGMMPDIIFNPHGFPSRMTIGMMIESMAGK 950
>gi|295673492|ref|XP_002797292.1| DNA-directed RNA polymerase I subunit RPA2 [Paracoccidioides sp.
'lutzii' Pb01]
gi|226282664|gb|EEH38230.1| DNA-directed RNA polymerase I subunit RPA2 [Paracoccidioides sp.
'lutzii' Pb01]
Length = 1220
Score = 619 bits (1596), Expect = e-174, Method: Compositional matrix adjust.
Identities = 364/905 (40%), Positives = 526/905 (58%), Gaps = 91/905 (10%)
Query: 37 HCRQAKISYTGKLMADVEFQYLDA-GSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVS 95
CR+ +Y G+L A +E++ + VRE GQ P+ML++ RC+L+ ++LV
Sbjct: 126 ECRERHATYRGRLRARLEYRINNGEWKESVRE---LGQVPIMLRSNRCYLEKCSPEQLVQ 182
Query: 96 LKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKD 155
KEE+ E+GGYF++NG E++ R +I+ ++N+PM+++RSSF R YT + IR VR D
Sbjct: 183 HKEESEELGGYFVVNGNEKLIRMLIVGRRNFPMAIIRSSFMKRGPTYTKFGIQIRSVRPD 242
Query: 156 QSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKK 215
Q+S T L+YL +G+V F + EYL+PV ++LK LV TND +IF L ++
Sbjct: 243 QTSQTNFLHYLSDGNVTFRFTWRKNEYLVPVVMILKGLVQTNDRDIFERLV-----GHEG 297
Query: 216 EKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVI 275
KG + + V++RV+++L + + R ++GE F+PV+ AV +
Sbjct: 298 SKG-IKNSFVTDRVELLLRTYKGYGIHGRDDIRAYLGEKFRPVLGMPTDIPDEAVGVEFL 356
Query: 276 RDYIFVHLND-------NNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLI 328
R + HL + +NDKFN+++FM++KL++LV DNPD++ NQE+LL G L
Sbjct: 357 RKVVLPHLGNHSVTDSQDNDKFNMILFMIRKLYTLVAGDCAPDNPDAVSNQEVLLGGFLY 416
Query: 329 TIYLKEKLEDWLRKGKKLIQD-EIENNGKKFD--FFNLANIKKVMEKNPSKQIGTSIETM 385
I LKE+LE+WLR + QD ++N +F F + K++ + ++ IG ++E
Sbjct: 417 GILLKERLEEWLRSFGPIAQDWSVKNQNARFTDPKFEKEFLSKIVART-NENIGGALEYF 475
Query: 386 LKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPES 445
L TG L + TGLDLQQ +GYTV AE++NF RFIS FR +HRG+ FA L+TT+VRKLLPE+
Sbjct: 476 LSTGNLVSPTGLDLQQPSGYTVMAEKINFYRFISHFRMIHRGSFFAQLKTTTVRKLLPET 535
Query: 446 WGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSL 505
C + T + + G + +++ +G+
Sbjct: 536 --HKCKIETSNLDVSG------------------------------VPQIISNLGVTSES 563
Query: 506 PKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSL 565
++ + V +DGR++G + + LR KV +P +LE+GYVP S
Sbjct: 564 SVSLE----ESVVVQMDGRILGYCSPKQARIISDTLRYWKVEGNKSLPVELEIGYVPNSN 619
Query: 566 GGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRNA 624
G YPG+YLF+ + VRPV+ + L ++ +GPFEQ FMEI C P G
Sbjct: 620 RGQYPGIYLFSQCARMVRPVKYLPL-----DKLDYVGPFEQPFMEIACVPSDIISG---- 670
Query: 625 FPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYH 684
+TH E PT +LS+VAN+TP+SD NQSPRNMYQCQM KQ MG ++++R D KLY
Sbjct: 671 -VSTHVEFDPTYILSIVANMTPFSDFNQSPRNMYQCQMGKQAMGTPGTSIQYRTDNKLYR 729
Query: 685 LQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQI 744
LQT QTPIVR Y YG+D +P G NA+VAVL+YTGYDM+DAMI+N+S+ DRG G I
Sbjct: 730 LQTGQTPIVRPPLYNCYGLDNFPNGMNAVVAVLSYTGYDMDDAMIINRSAHDRGFGWGTI 789
Query: 745 YQTETIDLSDDGNKVDRGQ------KLFRRNKDA---KSLHSVIDSDGLPYVGQMIHPGE 795
Y+T+ L D+ RG+ KLF +D DGLP++G + G
Sbjct: 790 YKTKVYCL-DEKESRGRGKAKREIAKLFGFAPGGLIKGEWRQTLDEDGLPHIGVRVTEGS 848
Query: 796 PYCSI----YDKTTNSWRTNSR-------KGSESVFVDYVAVDMKNSKNLP-QKANIRFR 843
+ +D +NS+ R K +E ++D V + + P Q +I++R
Sbjct: 849 IVAAWHTVRFDAVSNSYINIDRQTHFFKYKDTEEGYIDSVRILGSETGGDPCQAISIKYR 908
Query: 844 HTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLE 903
R P+IGDKFSSRHGQKGVCSQLWP IDMPFS +G++PD+IINPHAFPSRMTI M +E
Sbjct: 909 IPRKPVIGDKFSSRHGQKGVCSQLWPAIDMPFS-ESGIQPDVIINPHAFPSRMTIGMFVE 967
Query: 904 SVAAK 908
S+A K
Sbjct: 968 SLAGK 972
>gi|391330640|ref|XP_003739764.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 [Metaseiulus
occidentalis]
Length = 1151
Score = 619 bits (1595), Expect = e-174, Method: Compositional matrix adjust.
Identities = 368/956 (38%), Positives = 530/956 (55%), Gaps = 110/956 (11%)
Query: 12 LRELVRHHIESFDYMLDEGL---------------------------------SEMFDHC 38
L+E+ + H+ESFD+ ++EGL S+M +C
Sbjct: 43 LQEVAKAHLESFDWAMEEGLDLTLAEIEPLEFMVGKSRVKIRVSKAEVHPPAVSKMAVNC 102
Query: 39 RQAKI----------SYTGKLMADVEFQYLDAG---SPVVRERFNFGQFPVMLKTRRCHL 85
R +I +Y G+L ++ F + G P+ R + G+ P+M+K+R+C+L
Sbjct: 103 RSLQIFPKECRIRRVTYRGRL--ELRFDWWLNGLKQEPITR---SCGEIPIMVKSRKCNL 157
Query: 86 QGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDK 145
G +L+ EE E GGYF++NG E+V R +I+ ++NYP++M R+ ++ R +++
Sbjct: 158 HGMSPDQLIERGEELEEFGGYFVVNGNEKVLRLLIMQRRNYPIAMARNGWKGRGSMFSEF 217
Query: 146 AVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHL 205
V +R RKD SS + L+YL NG+V++ + + Y +P+ ++LKALVD +D EI+ L
Sbjct: 218 GVSLRSCRKDHSSQNMVLHYLTNGTVQVMITNRKELYFVPIVLLLKALVDKSDYEIYKSL 277
Query: 206 TCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSE 265
KG + +L VQ ++ T + IG+ F+ + +
Sbjct: 278 I----------KGFEDDSFYKGCITNMLRLVQKENILTHQDAKEFIGDKFRIKVYVPEWA 327
Query: 266 SYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPG 325
+ V + ++ + VHL+DN KFNL+ FM++KLF+ + ++ DS NQEILLPG
Sbjct: 328 TNSDVCDKLLDRCVCVHLDDNESKFNLMCFMVRKLFAAAKNKCALESADSTMNQEILLPG 387
Query: 326 HLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETM 385
HL LKEK+E L G KL ++ G NLAN+ N G M
Sbjct: 388 HLYLNVLKEKIEGLLL-GVKLSTEKKLQRGDP----NLANVNYSFMSNALGNAGDLTHAM 442
Query: 386 ---LKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLL 442
L TG L +++GL LQQ +G+T+ AE+LNF R+I FR VHRG+ F +RTTSVRKLL
Sbjct: 443 NYFLSTGNLISKSGLSLQQVSGFTIIAEKLNFWRYIGHFRCVHRGSFFMQMRTTSVRKLL 502
Query: 443 PESWGFLCPVHTPDGEPCGLLNHMTSTCR-VASYYDSRGNIRDFSKMRTSILRVLIGVGM 501
PE+WGFLCPVHTPDG PCGLL H+++ C V Y ++ I+ L +GM
Sbjct: 503 PEAWGFLCPVHTPDGGPCGLLLHLSAMCEIVVKQYPTK-----------PIVETLENLGM 551
Query: 502 IPSLPKLVKSGPPAVL------SVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDD 555
I + P L V LDGR +G I ++EK+ LR LK S I
Sbjct: 552 I-------EENSPTSLDFRDSYQVQLDGRCLGWIHEDDVEKLHVTLRYLKASGK--IAPT 602
Query: 556 LEVGYVPLSLGGA-YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCP 614
LE+ +P + + YPG++LF++P + +RPV N +Q +E IG EQV M+I C
Sbjct: 603 LEICVIPRTEQNSLYPGIFLFSTPARMMRPVLN-----NRTQAVEWIGTLEQVHMDI-CV 656
Query: 615 DGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQAL 674
+ TH+E+ T MLS++AN P+ D NQSPRNMYQCQM KQTMG + +
Sbjct: 657 VPEEAHEL----TTHQELSETAMLSILANQIPWPDFNQSPRNMYQCQMGKQTMGSPMHSY 712
Query: 675 KFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSS 734
+ RAD KLY L PQ+ +VR Y Y +DEYP+GTNAIVAV++YTGYDMEDAM+LNK S
Sbjct: 713 RNRADNKLYRLMNPQSALVRPTAYDHYKMDEYPSGTNAIVAVISYTGYDMEDAMVLNKMS 772
Query: 735 VDRGMCHGQIYQTETIDLSDDGNKVD-RGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHP 793
V+RG G +Y+TET++L V + +F R ++L +D DGLPY+G +
Sbjct: 773 VERGFKAGCVYKTETVNLRKLAGDVGVQTSCVFGRKAGDEALAKFVDYDGLPYIGSRVVH 832
Query: 794 GEPYCSIYDKTTNSWRTNSRKGSE-SVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGD 852
G+P C + TT + SE + V+ + + Q+ + R P+IGD
Sbjct: 833 GDPVCCYINLTTGQLKVVKYHSSEPATIVEVKILGNDCGTDTLQQVQFTYLIDRTPMIGD 892
Query: 853 KFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
KF+SR GQKGVCS LWP +MPF+ +GM PD+I NPH FPSRMTI M++ES+A K
Sbjct: 893 KFASRAGQKGVCSTLWPTENMPFTE-SGMVPDIIFNPHGFPSRMTIGMMVESMAGK 947
>gi|145489775|ref|XP_001430889.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124397990|emb|CAK63491.1| unnamed protein product [Paramecium tetraurelia]
Length = 1115
Score = 617 bits (1591), Expect = e-173, Method: Compositional matrix adjust.
Identities = 361/957 (37%), Positives = 544/957 (56%), Gaps = 112/957 (11%)
Query: 12 LRELVRHHIESFDYMLDEGLSEMFDH---------------------------------- 37
LR +HHIESF+Y+ GL E+ H
Sbjct: 9 LRVAAKHHIESFNYLYTHGLVEICRHLSPIEVCVPGNRDIRLPFKNMKIWIEELQIGMPT 68
Query: 38 --------------CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRC 83
CRQ K SYT ++A + + D +P R + G+ P+++K+++C
Sbjct: 69 QQGMLGDNRVLPTQCRQMKKSYTAPMLATICREIDD--NPKETVRLSLGEIPILVKSQKC 126
Query: 84 HLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYT 143
HL G +++LV +E+ E GGYFI+NG E++ R +I+ K+NYP++ R ++++ ++
Sbjct: 127 HLNGLSAEELVQQQEDCNEFGGYFIINGNEKIIRMLIIQKRNYPIAFKRPGYKNKGFNFS 186
Query: 144 DKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFN 203
AV ++CVR DQ + T+ L+YL++G+V L L+ KE +PV I+L+AL D ND +I+
Sbjct: 187 PYAVQMKCVRSDQYARTITLHYLMDGNVYLRIILKKKELQMPVIILLRALTDMNDYQIYQ 246
Query: 204 HLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQ 263
+ + +S+RV++++A+ + + T+ L++IG + ++
Sbjct: 247 QIV----------RSQADKSDISDRVEVMIADAKSRGINTQKDALEYIGRLLRVELNIFN 296
Query: 264 SESY-YAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEIL 322
E+ V +R++I VHL+++ DK ++L+ ++KL++L DN DSL NQE+L
Sbjct: 297 PETTDLQVGRIFLREHICVHLDNDQDKASILLLCIEKLYALFIDEINPDNLDSLVNQEVL 356
Query: 323 LPGHLITIYLKEKLEDWLRKGK-KLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTS 381
L GHL T YL+EKLED L + K+++D + K D LA K+ + + +G
Sbjct: 357 LSGHLYTAYLREKLEDLLVGVREKILKDATKEQSKLKD---LAYFKRCFDLQTT--VGEK 411
Query: 382 IETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKL 441
+E L TG L +QTGLDL + +G+T+ A++LN +RF+S FR+VHRG+ FA ++TT+VRKL
Sbjct: 412 LENFLATGNLRSQTGLDLMEASGFTIIADKLNNMRFLSHFRSVHRGSYFAQMKTTTVRKL 471
Query: 442 LPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGM 501
LP+ WGF+CPVHTPDG PCGLLNH+T +C ++ D + I +L +G+
Sbjct: 472 LPDVWGFVCPVHTPDGGPCGLLNHITMSCVPLTHPDEQ-----------DIEELLFPLGV 520
Query: 502 IPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYV 561
+L+ S L V+L+G+++G + SS + +R K + I + EV +
Sbjct: 521 QSQ--RLIYSKND--LPVVLNGKLIGYLNSSLLPTFEHTIRVYK--SNGTIKETTEVACL 574
Query: 562 PLSLGGA--YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDG 619
P + +PG+Y+ T+ + +RPV N+ L IE I P EQ+ M I C
Sbjct: 575 PRQENKSPLFPGIYINTTVARLMRPVINLKL-----NTIEWISPLEQINMSIACTQADIR 629
Query: 620 GRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRAD 679
++EI P +LS++A+ P+ ++NQSPRNMYQCQMAKQTMG +R D
Sbjct: 630 T-----DTQYQEIDPAYILSILASNVPFLNYNQSPRNMYQCQMAKQTMGSPCHNYPYRFD 684
Query: 680 QKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGM 739
K+Y + PQ P+VR Y Y +Y +GTNAIVAV++YTGYDMEDAMIL KSS +RG
Sbjct: 685 NKMYRILFPQKPVVRCFGYDDYQFADYASGTNAIVAVISYTGYDMEDAMILCKSSYERGF 744
Query: 740 CHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSD--------GLPYVGQMI 791
HG IY++ L+D D+ K ++ L++ I S GLP Q++
Sbjct: 745 GHGIIYKSSEYSLND-----DKEVKYKLLSQIPVQLYNQIKSQIPVNLLPYGLPEQSQVV 799
Query: 792 HPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIG 851
G ++YD + + K SE+ ++ VAV K+ ++ I++R RNPIIG
Sbjct: 800 TKGTAVLALYDSQLQQVKVHHSKDSETARIEQVAVVNKSENDV--SVMIKYRINRNPIIG 857
Query: 852 DKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
DKFSSRHGQKGV S LWP IDMPFS +GM PD+IINPHAFPSRMTI ML+ES+AAK
Sbjct: 858 DKFSSRHGQKGVMSLLWPQIDMPFSE-SGMVPDIIINPHAFPSRMTIGMLIESMAAK 913
>gi|402593918|gb|EJW87845.1| DNA-directed RNA polymerase [Wuchereria bancrofti]
Length = 1121
Score = 617 bits (1591), Expect = e-173, Method: Compositional matrix adjust.
Identities = 352/883 (39%), Positives = 509/883 (57%), Gaps = 60/883 (6%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CRQ ++Y G L VE + G + G+ P+MLK+ RCHL+ ++LV+
Sbjct: 74 CRQRGLTYRGPLKVSVEIRL--NGVKMDFCEVIIGEVPIMLKSNRCHLRWLTREQLVAHG 131
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
EE E GGYFI G E+V R ++ ++NYP+ ++R SFR++ +T ++IRCVR + S
Sbjct: 132 EEGTEKGGYFICKGTEKVIRLLVANRRNYPIGIIRRSFREKGPLFTQYGMMIRCVRGNYS 191
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
+V + L+YL +G++ + + + + LP V+K+L ND I H+ C
Sbjct: 192 AVMMTLHYLESGTIVIALQYRRELFYLPFMYVIKSLTSMNDHCIMEHMIRCRP------- 244
Query: 218 GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQS--ESYYAVAETVI 275
G V +LA D + + L IG F+ E V ++
Sbjct: 245 ---GDHFWKGCVTAMLALCNDDGVVNQKTALTAIGGRFRVATQDRVGPWEVSEDVGRFLL 301
Query: 276 RDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEK 335
R + +HL+++ DKF LL +M QKL +L +++PD+ Q QE ++ GH++ + ++E+
Sbjct: 302 RVCVAIHLDNDEDKFFLLSYMAQKLIALAKGECAAESPDNPQFQEAVVSGHILLLIIRER 361
Query: 336 LEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQT 395
LE+ L ++ I+ E + + F + + + + S +I +E + TG L T+
Sbjct: 362 LENILSIARRKIELEAKRKAENF-LLSSHELIRAIGTQRSGEITRGLEYFIATGNLITKG 420
Query: 396 GLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTP 455
GL LQQ G++V AER+N LRF+S FRA+HRGA F +RTT VRKL PE+WGF+CPVHTP
Sbjct: 421 GLTLQQNNGFSVIAERINQLRFVSHFRAIHRGAFFMEMRTTDVRKLRPEAWGFICPVHTP 480
Query: 456 DGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPA 515
DG PCGLLNH+T++ R+ ++Y N + K+ + ++G + LP +
Sbjct: 481 DGAPCGLLNHVTASVRIVTHYS---NTNELPKLLGEL--GMVGHSAVTLLPA------ES 529
Query: 516 VLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYV-----PLSLGGAYP 570
+ VL+DG+ VG I S+ + LR LKVS + +P E+ V P+++ YP
Sbjct: 530 MYPVLVDGKFVGHISQSQASHIERQLRFLKVSDDARVPSCAEIILVQKSTDPINILVQYP 589
Query: 571 GLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHE 630
GLY+FT P + +RPVR LPS IE IG FEQV++ I C D + H+
Sbjct: 590 GLYIFTEPARLIRPVR--YLPS---NRIEFIGMFEQVYLSI-CIDPEEA---EPNVTMHQ 640
Query: 631 EIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQT 690
EIHP+ + S ANL P+ DHNQSPRN+YQCQM KQTMG V A +RAD K+Y LQ PQ
Sbjct: 641 EIHPSCLFSFAANLIPFPDHNQSPRNVYQCQMGKQTMGIPVHAWNYRADNKMYRLQFPQD 700
Query: 691 PIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETI 750
PIV+ + Y KYGIDEYP GTNA VAV++YTGYDMEDAM++NKSS +RG HG I + E I
Sbjct: 701 PIVKPDPYEKYGIDEYPLGTNACVAVISYTGYDMEDAMVINKSSYERGFAHGSIVKVERI 760
Query: 751 DLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRT 810
+L++ R + D K+ ID DGLP G++ G+PY S+Y+ TN+++
Sbjct: 761 NLTE-----GRPTESLVFLCDPKNPQKTIDLDGLPIPGRLYMEGDPYYSVYEIDTNNYKV 815
Query: 811 NSRKGSESVFVDYVAV-----DMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCS 865
+ K +E+ F V + + NSK A I++R RNPIIGDKF+SRHGQKG+ S
Sbjct: 816 HKYKYAEAAFCGSVRIVEGGEHIGNSKG-KCHALIQWRTQRNPIIGDKFASRHGQKGINS 874
Query: 866 QLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
LWP MPFS +GM PD+I NPH M++ES+A K
Sbjct: 875 FLWPTESMPFSE-SGMVPDIIFNPH--------GMMIESMAGK 908
>gi|13929088|ref|NP_113961.1| DNA-directed RNA polymerase I subunit RPA2 [Rattus norvegicus]
gi|3914801|sp|O54888.1|RPA2_RAT RecName: Full=DNA-directed RNA polymerase I subunit RPA2; Short=RNA
polymerase I subunit 2; AltName: Full=A127; AltName:
Full=RPA135
gi|2739048|gb|AAB94600.1| RNA polymerase I 127 kDa subunit [Rattus norvegicus]
Length = 1135
Score = 616 bits (1588), Expect = e-173, Method: Compositional matrix adjust.
Identities = 367/963 (38%), Positives = 513/963 (53%), Gaps = 127/963 (13%)
Query: 12 LRELVRHHIESFDYMLDEGLSEMFD----------------------------------- 36
L++L R H++SF+Y + EGLS
Sbjct: 35 LQDLTRAHVDSFNYAVLEGLSHAVQAIPPFEFAFKDERISLTIVDAAISPPAVPKGTICK 94
Query: 37 -------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGAD 89
CR + +Y GKL AD+ + ++++ G P+M+K++ C+L
Sbjct: 95 ELNIYPAECRGRRSTYRGKLTADISWAVNGVPKGIIKQFL--GXVPIMVKSKLCNLYNLP 152
Query: 90 SQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVI 149
Q L+ EEA EMGGYFI+NG+E+V R +I+P++N+P++M+R ++ R GYT V I
Sbjct: 153 PQVLIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWKSRGLGYTQFGVSI 212
Query: 150 RCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY 209
CVR++ S+V + L+Y+ NG+V L F + + + LP+G LKALV +D +IF L
Sbjct: 213 HCVREEHSAVNMNLHYVENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELI--- 269
Query: 210 DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYA 269
KE+ + VS+ ++I++ E T+ Q L ++GE F+ +
Sbjct: 270 ---KGKEEDSFFKNSVSQMLRIVMEE----GCHTQKQVLDYLGERFRVKLSLPDWYPNAE 322
Query: 270 VAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
AE + I +HL N DKF LL M +KLF+L + DNPDSL NQE+L PG L
Sbjct: 323 AAEFLFNQCICIHLKSNTDKFYLLCLMTRKLFALARGECMEDNPDSLVNQEVLTPGQLFL 382
Query: 330 IYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTG 389
++LKEK+E+WL K + + + NL I + ++ E +L TG
Sbjct: 383 MFLKEKMENWLLSIKIALDKRAQKTNVSINNENLMKIFSM-----GTELTRPFEYLLATG 437
Query: 390 RLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFL 449
L ++TGL Q +G V A++LNF+R++S FR VHRGA FA +RTT+VRKLLPESWGFL
Sbjct: 438 NLRSKTGLGFMQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVRKLLPESWGFL 497
Query: 450 CPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLV 509
CPVHTPDG PCGLLNH+T+ C V + + SI +L G+G+ P V
Sbjct: 498 CPVHTPDGAPCGLLNHLTAVCEVVTKF----------VYTASIPALLCGLGVTP-----V 542
Query: 510 KSGPPAVLS----VLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSL 565
+ P S VLLDG +VG + +V LRR KV SL
Sbjct: 543 DAAPCRPYSDCYPVLLDGVMVGWVDKELAPEVADTLRRFKVLRERRCS----------SL 592
Query: 566 GGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRR--- 622
G P + + P + SL + E+ C + G G RR
Sbjct: 593 DGGGPDSHDRKAKPVPRAVPLHHSLQAGEA-----------------CAEPGAGQRRARW 635
Query: 623 NAFPATHEEIH----------------PTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQT 666
N A HE H P+ V+AN P+SDHNQSPRNMYQCQM KQT
Sbjct: 636 NYGAALHEHCHLRGRGFWWSFHTPGALPSQPAEVIANFIPFSDHNQSPRNMYQCQMGKQT 695
Query: 667 MGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMED 726
MGF + + R+D KLY LQTPQ+P+VR Y Y +D YP GTNAIVAV++YTGYDMED
Sbjct: 696 MGFPLLTYQDRSDNKLYRLQTPQSPLVRPCMYDHYDMDNYPIGTNAIVAVISYTGYDMED 755
Query: 727 AMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPY 786
AMI+NK+S +RG HG +Y++E IDLS+ + D + D + + +D+DGLP+
Sbjct: 756 AMIVNKASWERGFAHGSVYKSEFIDLSEKFKQGDDSLVFGVKPGDPRVMQK-LDNDGLPF 814
Query: 787 VGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHT 845
+G + G+PY + T K E+ VD + V ++ + K + R
Sbjct: 815 IGAKLEFGDPYYGYLNLNTGEGFVVYYKSKENCVVDNIKVCSNDTGSGKFKCVCVTVRVP 874
Query: 846 RNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESV 905
RNP IGDKF+SRHGQKG+ S+LWP DMPF+ +GM PD++ NPH FPSRMTI ML+ES+
Sbjct: 875 RNPTIGDKFASRHGQKGILSRLWPAEDMPFTE-SGMMPDILFNPHGFPSRMTIGMLIESM 933
Query: 906 AAK 908
A K
Sbjct: 934 AGK 936
>gi|322801624|gb|EFZ22265.1| hypothetical protein SINV_10883 [Solenopsis invicta]
Length = 1120
Score = 616 bits (1588), Expect = e-173, Method: Compositional matrix adjust.
Identities = 356/956 (37%), Positives = 531/956 (55%), Gaps = 96/956 (10%)
Query: 2 ARKKSADFEPLRELVRHHIESFDYMLDEGLSEMF-------------------------- 35
R E L+ L HIESF+YML++GL +
Sbjct: 15 GRSPDTQNEILQSLGTPHIESFNYMLEDGLYQNLKDNTPVYVTLPNSDKIVLWLDDVHIY 74
Query: 36 ------------------DHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVM 77
CRQ ++Y GK++A + + ++ + E+ + G+ P+M
Sbjct: 75 KPAAPTNTIGLKSYKIYPSECRQRGVTYKGKIIARIGWS-INGKEQEILEK-DLGEVPIM 132
Query: 78 LKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRD 137
LK+ RCHL ++LV+ E E GGYFI+ GLER+ R +I+ ++NYP+++ R ++
Sbjct: 133 LKSNRCHLNKMSPKELVAHGEHEQEWGGYFIIKGLERLVRMLIMTRRNYPIAVKRPIWKG 192
Query: 138 RREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTN 197
R E ++D +++R VR D S+V L+Y+ +GS + F + Y +P+ ++LK L D
Sbjct: 193 RGEQFSDLGILLRSVRDDNSTVNNTLHYVTDGSAKFAFAYKKATYYVPLILMLKCLKDVT 252
Query: 198 DLEIFNHLTC-CYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQ 256
DL I+ L C D+ Y + + +L V + L QC +IG+ F+
Sbjct: 253 DLCIYKALLAGCEDDLY-----------YNNSIMNMLRAVHEEGLHWHEQCKAYIGKMFR 301
Query: 257 PVIDGLQSESY-YAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDS 315
L ++ V + ++++ + +HL++ DKF+LL+FM +KLF+ ++ + DS
Sbjct: 302 VKFSELPEDATDIDVCDYIVKNCVAIHLDEPADKFDLLVFMTKKLFAFSNNKCAVEGVDS 361
Query: 316 LQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFF--NLANIKKVMEKN 373
+ QE L+ GHL L EKL WL K I ++ G ++ + N+ K+
Sbjct: 362 VMMQECLMGGHLYLQVLNEKLCSWLVGVKHHILKRAKSAGNRYTLSVQEMLNVTKL---- 417
Query: 374 PSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGL 433
I +E L TG + + +GL L Q +G T+ E +N +R++S FRA+HRGA F +
Sbjct: 418 -RCNIDAQMEYFLSTGSIRSSSGLGLTQSSGLTIVVENINRMRYMSHFRAIHRGAFFQEM 476
Query: 434 RTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSIL 493
RTT R+LLP++WGF+CP+HTPDG PCGLLNH+T C V + ++ K++ +I
Sbjct: 477 RTTEARQLLPDAWGFICPIHTPDGAPCGLLNHLTMNCIVTKHPNA--------KLKAAIP 528
Query: 494 RVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIP 553
VL+ +GM P LP + +V+LDG+++G+I I KVV LR K+ IP
Sbjct: 529 TVLVDLGMTP-LP--IADDWKNSYNVMLDGKLIGLIEDKIINKVVYELRLRKIKGKE-IP 584
Query: 554 DDLEVGYVPL-SLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIR 612
LE+ VP ++ YPGL+LFTS + +RPV N++ +Q IE IG FEQ++++I
Sbjct: 585 STLEIALVPKKNVPAQYPGLFLFTSAARMMRPVINLA-----AQKIEYIGTFEQIYLDI- 638
Query: 613 CPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQ 672
C + TH+EI T + S +ANL P D NQSPRNMYQCQM KQTMG
Sbjct: 639 CVISQEVYEGMT---THQEISQTTIFSNLANLIPMPDCNQSPRNMYQCQMGKQTMGTPCH 695
Query: 673 ALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNK 732
+ ++ KLY LQTP TP+ R Y +D++ GTNAI+AV++YTGYDMEDAMI+NK
Sbjct: 696 NWQQQSQTKLYRLQTPATPLFRPVHYDNINMDDFAMGTNAIIAVISYTGYDMEDAMIINK 755
Query: 733 SSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIH 792
SS +RG HG IY++E +DL+D + F R+ L ID DGLP +G I
Sbjct: 756 SSYERGFGHGSIYKSEFVDLNDK-------KSYFARDPAKPDLAKTIDVDGLPMIGIAIK 808
Query: 793 PGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGD 852
G+ Y S YD + + K +E+ +VD V + + ++A I FR RNPI+GD
Sbjct: 809 EGDAYYSYYDADSAQYVIGKYKSAETAYVDNVKLCGSLGNHDIRRACITFRIPRNPIVGD 868
Query: 853 KFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
KF+SR GQKG+ S+L+P D+PF+ TGM PD+I NPH FPSRMTIAM++E +A K
Sbjct: 869 KFASRAGQKGILSRLYPIEDLPFTE-TGMVPDIIFNPHGFPSRMTIAMMIEVMAGK 923
>gi|170584696|ref|XP_001897130.1| DNA-directed RNA polymerase, beta subunit family protein [Brugia
malayi]
gi|158595460|gb|EDP34013.1| DNA-directed RNA polymerase, beta subunit family protein [Brugia
malayi]
Length = 1108
Score = 615 bits (1585), Expect = e-173, Method: Compositional matrix adjust.
Identities = 357/888 (40%), Positives = 506/888 (56%), Gaps = 83/888 (9%)
Query: 38 CRQAKISYTGKLMADVEFQY----LDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKL 93
CRQ ++Y G L VE + +D +V G+ P+MLK+ RCHL+ ++L
Sbjct: 74 CRQRGLTYRGPLKVSVEIRLNGVKMDFCEVIV------GEVPIMLKSNRCHLRWLTREQL 127
Query: 94 VSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVR 153
V+ EE E GGYFI G E+V R ++ ++NYP+ +VR SFR++ +T ++IRCVR
Sbjct: 128 VAHGEEGTEKGGYFICKGTEKVIRLLVANRRNYPIGIVRRSFREKGPLFTQYGMMIRCVR 187
Query: 154 KDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKY 213
+ S+V + L+YL +G++ + + + + LP V+K+L ND I H+ C
Sbjct: 188 GNYSAVMMTLHYLESGTIVIALQYRRELFYLPFMYVIKSLTSMNDQCIMEHMIRCRP--- 244
Query: 214 KKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQS--ESYYAVA 271
G V +LA D + + L IG F+ E V
Sbjct: 245 -------GDHFWKGCVTAMLALCNDDGVVNQKTALTAIGARFRVATQDRVGPWEISEDVG 297
Query: 272 ETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIY 331
++R + +HL+++ DKF LL +M QKL +L +++PD+ Q QE + GH++ +
Sbjct: 298 RFLLRVCVAIHLDNDEDKFFLLSYMAQKLIALAKGECAAESPDNPQFQEAAVSGHILLLI 357
Query: 332 LKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRL 391
++E+LE+ L ++ I+ E + + F + + + M S +I +E + TG L
Sbjct: 358 IRERLENTLSIARRKIELEAKRKAESF-LLSSHELIRAMGTQRSGEITRGLEYFIATGNL 416
Query: 392 ATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCP 451
T+ GL LQQ G++V AER+N LRF+S FRA+HRGA F +RTT VRKL PE+WGF+CP
Sbjct: 417 ITKGGLTLQQNNGFSVIAERINQLRFVSHFRAIHRGAFFMEMRTTDVRKLRPEAWGFICP 476
Query: 452 VHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIG-VGMIPSLPKLVK 510
VHTPDG PCGLLNH+T++ R+ ++Y + TS L L+G +GM+
Sbjct: 477 VHTPDGAPCGLLNHVTASVRIVTHYSN-----------TSELPKLLGELGMM-------- 517
Query: 511 SGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYV-----PLSL 565
VL+DG+ VG I SE + LR LKVS +P E+ V P+++
Sbjct: 518 ------YPVLVDGKFVGYISQSEASHIERQLRFLKVSDDVRLPSCAEIILVQKSIDPINI 571
Query: 566 GGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAF 625
YPGLY+FT P + +RPVR LPS IE IG FEQV++ I C D +
Sbjct: 572 LVQYPGLYIFTEPARLIRPVR--YLPS---NRIEFIGTFEQVYLSI-CIDPEEA---EPN 622
Query: 626 PATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHL 685
H+EIHP+ + S ANL P+ DHNQSPRN+YQCQM KQTMG V A +RAD K+Y L
Sbjct: 623 VTMHQEIHPSCLFSFAANLIPFPDHNQSPRNVYQCQMGKQTMGIPVHAWNYRADNKMYRL 682
Query: 686 QTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIY 745
Q PQ PIV+ + Y KYGIDEYP GTNA VAV++YTGYDMEDAM++NKSS +RG HG I
Sbjct: 683 QFPQNPIVKPDPYEKYGIDEYPLGTNACVAVISYTGYDMEDAMVINKSSYERGFAHGSIV 742
Query: 746 QTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTT 805
+ E I+L++ R + D K+ I DGLP G++ G+PY S+Y+ T
Sbjct: 743 KVERINLTE-----GRPTESLVFLCDPKNPQKTIGLDGLPIPGRLYMEGDPYYSVYEIDT 797
Query: 806 NSWRTNSRKGSESVFVDYVAV-----DMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQ 860
N+++ + K +E+ F V + + NSK A I++R RNPIIGDKF+SRHGQ
Sbjct: 798 NNYKVHKYKYAEAAFCGSVRIVEEGEHIGNSKG-KCHALIQWRTQRNPIIGDKFASRHGQ 856
Query: 861 KGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
KG+ S LWP MPFS +GM PD+I NPH M++ES+A K
Sbjct: 857 KGINSFLWPTESMPFSE-SGMVPDIIFNPH--------GMMIESMAGK 895
>gi|145542267|ref|XP_001456821.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124424634|emb|CAK89424.1| unnamed protein product [Paramecium tetraurelia]
Length = 1115
Score = 612 bits (1578), Expect = e-172, Method: Compositional matrix adjust.
Identities = 358/952 (37%), Positives = 540/952 (56%), Gaps = 102/952 (10%)
Query: 12 LRELVRHHIESFDYMLDEGLSEMFDH---------------------------------- 37
LR +HHIESF+Y+ GL E+ H
Sbjct: 9 LRVAAKHHIESFNYLYTHGLIEICRHLSPIEVCVPGNRDIRLPFKNMKIWIEELQIGMPT 68
Query: 38 --------------CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRC 83
CRQ K SYT ++A + + D +P R + G+ P+++K+++C
Sbjct: 69 QQGMLGDNRVLPTQCRQMKKSYTAPMLATICREIDD--NPKETVRLSLGEIPILVKSQKC 126
Query: 84 HLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYT 143
HL G +++LV +E+ E GGYFI+NG E++ R +I+ K+NYP++ R ++++ ++
Sbjct: 127 HLNGLSAEELVQQQEDCNEFGGYFIINGNEKIIRMLIIQKRNYPIAFKRPGYKNKGFNFS 186
Query: 144 DKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFN 203
AV ++CVR DQ + T+ L+YL++G+V L L+ KE +PV I+L+AL D ND +I+
Sbjct: 187 PFAVQMKCVRSDQYARTITLHYLMDGNVYLRIILKKKELQMPVIILLRALTDMNDYQIYQ 246
Query: 204 HLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQ 263
+ + +S+RV++++A+ + + T+ L++IG + ++
Sbjct: 247 QIV----------RSQADKSDISDRVEVMIADAKSRGINTQKDALEYIGRLLRVELNIFN 296
Query: 264 SESY-YAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEIL 322
E+ V +R++I VHL ++ DK ++L+ ++KL++L DN DSL NQE+L
Sbjct: 297 PETTDLQVGRIFLREHICVHLENDQDKASILLLCIEKLYALFIDEINPDNLDSLVNQEVL 356
Query: 323 LPGHLITIYLKEKLEDWLRKGK-KLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTS 381
L GHL T YL+EKLED L + K+++D + K D LA K+ + + +G
Sbjct: 357 LSGHLYTAYLREKLEDLLVGVREKILKDASKEQSKLKD---LAYFKRCFDLQTT--VGEK 411
Query: 382 IETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKL 441
+E L TG L +QTGLDL + +G+T+ A++LN +RF+S FR+VHRG+ FA ++TT+VRKL
Sbjct: 412 LENFLATGNLRSQTGLDLMEASGFTIIADKLNNMRFLSHFRSVHRGSYFAQMKTTTVRKL 471
Query: 442 LPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGM 501
LP+ WGF+CPVHTPDG PCGLLNH+T +C ++ D + + +L +G+
Sbjct: 472 LPDVWGFVCPVHTPDGGPCGLLNHITMSCVPLTHPDEQ-----------DVEELLFPLGV 520
Query: 502 IPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYV 561
+L+ S L V+L+G+++G + SS + LR K + I + EV +
Sbjct: 521 QSQ--RLIYSKND--LPVVLNGKLIGYLNSSLLPTFEHTLRVYK--SNGTIKETTEVACL 574
Query: 562 PLSLGGA--YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDG 619
P + +PG+Y+ T+ + +RPV N+ L IE I P EQ+ M I C
Sbjct: 575 PRQENKSPLFPGIYINTTVARLMRPVINLKL-----NTIEWISPLEQINMSIACTQADIR 629
Query: 620 GRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRAD 679
++EI P +LS++A+ P+ ++NQSPRNMYQCQMAKQTMG +R D
Sbjct: 630 T-----DTQYQEIDPAYILSILASNVPFLNYNQSPRNMYQCQMAKQTMGSPCHNYPYRFD 684
Query: 680 QKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGM 739
K+Y + PQ P+VR Y Y +Y +GTNAIVAV++YTGYDMEDAMIL KSS +RG
Sbjct: 685 NKMYRILFPQKPVVRCFGYDDYQFADYASGTNAIVAVISYTGYDMEDAMILCKSSYERGF 744
Query: 740 CHGQIYQTETIDLSDDGN---KVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEP 796
HG IY++ L++D K+ + N+ + + GLP Q++ G
Sbjct: 745 GHGIIYKSSEYSLNEDKEVKYKLLSQIPIQLYNQIKAQVPVNLLPYGLPEQSQVVTKGSA 804
Query: 797 YCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSS 856
++YD + K SE+ ++ VAV K+ ++ I++R RNPIIGDKFSS
Sbjct: 805 VLALYDSQLQQVKVYHSKDSETARIEQVAVVNKSENDV--SVMIKYRINRNPIIGDKFSS 862
Query: 857 RHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
RHGQKGV S LWP IDMPFS +GM PD+IINPHAFPSRMTI ML+ES+AAK
Sbjct: 863 RHGQKGVMSLLWPQIDMPFSE-SGMVPDIIINPHAFPSRMTIGMLIESMAAK 913
>gi|170032393|ref|XP_001844066.1| DNA-directed RNA polymerase I 135 kDa polypeptide [Culex
quinquefasciatus]
gi|167872352|gb|EDS35735.1| DNA-directed RNA polymerase I 135 kDa polypeptide [Culex
quinquefasciatus]
Length = 1129
Score = 611 bits (1575), Expect = e-172, Method: Compositional matrix adjust.
Identities = 344/949 (36%), Positives = 519/949 (54%), Gaps = 116/949 (12%)
Query: 19 HIESFDYMLDEGLSEMF------------------------------------------- 35
HIESFDY+L EGL+++
Sbjct: 32 HIESFDYVLREGLADVIRQLDPVEFELPNKDRVRLRIGDCSIARPVVPLSQLNVREKRVF 91
Query: 36 -DHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLV 94
CRQ +Y G V+++ P + + G PVML++R C+L G +LV
Sbjct: 92 PSECRQKNETYAGMCTITVDWEVNGQPRPAITR--DIGALPVMLRSRACNLGGMSPAELV 149
Query: 95 SLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRK 154
E E GG+F++ G+E++ R +I+ ++NYP+ + R+S+RDR + ++ ++IRCVR
Sbjct: 150 ERGEHEDEWGGHFVVRGMEKLIRMLIMTRRNYPIVLSRNSWRDRGKEFSSTGIMIRCVRT 209
Query: 155 DQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDE-KY 213
DQ+S L+YL+NG+ +L F ++ +P+ ++LKAL D D EI+ L Y+E +Y
Sbjct: 210 DQTSTNNVLHYLVNGTAKLMFSIRRSLTFIPIMMLLKALSDYTDNEIYKRLIVGYEEDQY 269
Query: 214 KKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAET 273
K ++ +L E+ + + +++C ++G+ F+ + L ++Y A+
Sbjct: 270 YKHC-----------IQNMLRELHEEGIHNQVECKDYMGKVFRTKLYYL--PAWYTDAQR 316
Query: 274 ---VIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITI 330
+++ + +HL+D+ DKFNLL+FM+QKLF+ ++ DS QE+LL GHL
Sbjct: 317 TDHLLKTCVLIHLDDDLDKFNLLVFMMQKLFTAAQGRCKLESVDSTMMQELLLGGHLYQK 376
Query: 331 YLKEKLEDWLRKGKKLIQDEIENNGKKFDFF--------NLANIKKVMEKNPSKQIGTSI 382
L+E +L NG K++ +L + VM + +
Sbjct: 377 LLREHFLTFL-------------NGMKYNMLKLCSDADAHLGQNEAVMACKNASNFDRAF 423
Query: 383 ETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLL 442
TG L + + L Q +G + AE +N +R++S FRA+HRG+ F +RTT R+LL
Sbjct: 424 SNFFATGNLQKASEMGLMQDSGLVIIAENINRMRYMSHFRAIHRGSFFVTMRTTEARQLL 483
Query: 443 PESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMI 502
P++WGF+CPVHTPDG PCGLLNH+T+ CRV++ D G +++ K LI GM
Sbjct: 484 PDAWGFICPVHTPDGTPCGLLNHLTTNCRVSNSPDP-GKVKNIEK-------YLIQYGMT 535
Query: 503 PSLP-KLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYV 561
P+ L G +V+++GR+ G IP + + + V LR LK+ IP+ E+ ++
Sbjct: 536 PANSVALSGGGVGEGYTVMVEGRIAGRIPKAVVGQAVQQLRMLKIGGEE-IPEATEIVFI 594
Query: 562 PLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGR 621
P GG YPGLY+F + +RPV N+ ++ +ELIG FEQV+M+I C
Sbjct: 595 PSKEGGQYPGLYIFVGAARMMRPVINL-----DANKVELIGTFEQVYMDI-CITA----- 643
Query: 622 RNAFP--ATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRAD 679
R A+P TH+E+ T LS +A L P D NQSPRNMYQCQM KQTMG + +
Sbjct: 644 REAYPKVTTHKELSKTSFLSNLAMLIPMPDCNQSPRNMYQCQMGKQTMGTPCHNWQLQCI 703
Query: 680 QKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGM 739
K Y LQTP TP+ R + +D Y GTNAIVAV++YTGYDMEDAMI+NKS+ +RG
Sbjct: 704 AKFYRLQTPATPLFRPVHHDNIDLDNYAMGTNAIVAVISYTGYDMEDAMIINKSAFERGF 763
Query: 740 CHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCS 799
HG +Y+ E I+L +G F R+ + L +D+DGLPY ++ P
Sbjct: 764 AHGTVYKNELIEL--------KGDSFFARDPRDERLKQFLDNDGLPYRSALLQHRNPMYC 815
Query: 800 IYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHG 859
+D +++ E VD + + S + P+KA I +R RNP +GDKF+SR G
Sbjct: 816 YFDTNDHTYHVVKFDHHEDGIVDNIKLCGTTSASAPKKAVITYRIVRNPNVGDKFASRAG 875
Query: 860 QKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
QKG+CSQ WP +D+PF+ +GM PD+I NPH FPSRMTIAM++E++A K
Sbjct: 876 QKGICSQKWPAVDLPFTE-SGMIPDIIFNPHGFPSRMTIAMMIETMAGK 923
>gi|405955197|gb|EKC22403.1| DNA-directed RNA polymerase I subunit RPA2 [Crassostrea gigas]
Length = 1142
Score = 610 bits (1573), Expect = e-171, Method: Compositional matrix adjust.
Identities = 372/958 (38%), Positives = 526/958 (54%), Gaps = 92/958 (9%)
Query: 2 ARKKSADFEPLRELVRHHIESFDYMLDEGLS---------------------EMFD---- 36
R K +PL++L + HI+SF+ ++ GLS +M D
Sbjct: 19 GRLKPHQHQPLQDLTKPHIDSFNALIHGGLSRAVQTIPPVDFALPNGDRIAFKMLDATIS 78
Query: 37 -------------------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVM 77
CR+ SY G L + ++ V + P+M
Sbjct: 79 YPTVDLGNKYAQTLKVYPAECRERGSSYLGSLSISMLWKVNGRIQGTVERKI--ADVPIM 136
Query: 78 LKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRD 137
+K+ C+L G ++LV EEA EMGGYFI NG E+V R +++ ++N+P + R S+++
Sbjct: 137 VKSSVCNLNGLTPKELVRRGEEAEEMGGYFISNGNEKVIRMLVMSRRNFPTCINRPSWKN 196
Query: 138 RREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTN 197
R + YT+ V +R V D V L+YL NGS L F Q + + +PV +LKAL +
Sbjct: 197 RGKQYTEYGVSLRSVGDDNIGVNNVLHYLSNGSASLCFSHQKEMFFVPVVFILKALHNVT 256
Query: 198 DLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQP 257
D I++ L KE + V ++ L+E +LTT+ L ++GE F+
Sbjct: 257 DKFIYDQLI------QGKEDNSFYKGCVIAMLRHALSE----NLTTQKTVLAYMGEIFRV 306
Query: 258 VIDGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQ 317
+ + V E +I+ I VHL++N DKF+LL++M +KLF+ S++ D+
Sbjct: 307 KLSLPPWYTDQDVGEYLIKYCICVHLDNNIDKFHLLVYMTRKLFAFAKGECASESADNPM 366
Query: 318 NQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQ 377
QE+LL G L + LKEKL DW+ K I D N K+ ++ L + +
Sbjct: 367 FQELLLGGQLYGMILKEKLHDWMISVKSSI-DRTAKNYKEQEYV-LTEVTMNDALRHTTN 424
Query: 378 IGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS 437
I S+E + +G + +++GL L Q G TV A++LNF R+IS FR VHRG+ F+ +RTT+
Sbjct: 425 ITKSMEYFMASGSIHSRSGLGLMQVTGLTVVADKLNFFRYISHFRCVHRGSFFSEMRTTA 484
Query: 438 VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLI 497
VRKLLPE+WGFLCPVHTPDG PCGLLNH+T+ + + S ++ +L
Sbjct: 485 VRKLLPEAWGFLCPVHTPDGSPCGLLNHLTALAGAVTSHLSNKHLAS----------LLF 534
Query: 498 GVGMIPS-LPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDL 556
+G P P + +V LDGR++G + + V LR +KV S +P
Sbjct: 535 SMGTTPCDAPAMAPMS--KCFTVFLDGRILGYLHEDIAQSVEKRLRFMKVKGLSKVPPMS 592
Query: 557 EVGYVPLS-LGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-- 613
E+ VP + YPGLY+FTS + +RPV N++ +E IG FEQV+M+I C
Sbjct: 593 EICLVPKTKFASQYPGLYIFTSTARMIRPVWNLTTDCKE-----WIGTFEQVYMDI-CIT 646
Query: 614 PDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQA 673
P+ G TH+E+ MLS VA TP+SD NQSPRNMYQCQM KQTMGF V A
Sbjct: 647 PEEAIQGV-----TTHQELSEVSMLSTVAQFTPFSDFNQSPRNMYQCQMGKQTMGFPVHA 701
Query: 674 LKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKS 733
L RAD KLY LQTPQ+P+VR Y Y +D YP GTNAIVAV++YTGYDMEDAMILNKS
Sbjct: 702 LDRRADNKLYKLQTPQSPVVRPVMYDHYEMDTYPLGTNAIVAVMSYTGYDMEDAMILNKS 761
Query: 734 SVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKD-AKSLHSVIDSDGLPYVGQMIH 792
S +RG H IY+++ IDL+ D + R ++F D + L + +GLP++G +
Sbjct: 762 SFERGFAHASIYKSQIIDLNSDHH--GRILQIFGCLPDNSHFLGDRLTKEGLPHIGTYLQ 819
Query: 793 PGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAV--DMKNSKNLPQKANIRFRHTRNPII 850
G+P+ S + T R S E +V + D + L + I R RNPII
Sbjct: 820 RGDPFYSTINIQTGKSREYSYTSDEPAYVHQIKALGDTTGIQEL-SRVCIVLRVKRNPII 878
Query: 851 GDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
GDKFSSRHGQKGVCS +WP +MPF+ +GM PD++ NPH +PSRMTI M++ES+A K
Sbjct: 879 GDKFSSRHGQKGVCSMMWPVENMPFTE-SGMTPDILFNPHGYPSRMTIGMMIESMAGK 935
>gi|341880642|gb|EGT36577.1| hypothetical protein CAEBREN_11996 [Caenorhabditis brenneri]
Length = 1128
Score = 609 bits (1571), Expect = e-171, Method: Compositional matrix adjust.
Identities = 339/908 (37%), Positives = 522/908 (57%), Gaps = 58/908 (6%)
Query: 14 ELVRHHIESFDYMLDEGLSEMFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQ 73
+L + ++S + + L M CRQ ++Y G L ++ GS + G+
Sbjct: 49 QLFKPSLDSGAKLTVDTLPVMPAECRQRGLTYAGNLKVGIDVHV--NGSRLDMIETILGK 106
Query: 74 FPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRS 133
P+ML++ CHL+G ++LV+ EE E GGYFI+NG E+V R +I ++N+P++++R
Sbjct: 107 VPIMLRSEGCHLRGMSREELVAAGEEPIEKGGYFIVNGSEKVIRLLIANRRNFPIAIIRK 166
Query: 134 SFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKAL 193
+F+++ +++ V++R V+++ ++V + L+YL G+++L + + + +P+ V+KAL
Sbjct: 167 TFKEKGRLFSEFGVMMRSVKENHTAVMMTLHYLDTGTMQLALQFRREIFYVPLMYVVKAL 226
Query: 194 VDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGE 253
D ND I ++G S + +LA+ Q+ + + L+ IG
Sbjct: 227 TDKNDAVIAAGF----------KRGRPQDQFFSSCILNMLAQCQEEGILNQQSALRAIGS 276
Query: 254 HFQPVIDGLQS--ESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSD 311
F+ I + E +IR+ + +HLN + +KF L +M QKL +LV +
Sbjct: 277 RFRVAISDRVAPWEDDLEAGRFIIRECVLIHLNSDEEKFFTLAYMAQKLIALVKGECAPE 336
Query: 312 NPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDF-FNLANIKKVM 370
PD+ Q QE + GH++ + L+E++E+ + +++ ++E K DF A I K +
Sbjct: 337 TPDNPQFQEASVSGHILLLILRERMENII----GMVRRKLEFMSAKSDFILTSAAIIKAL 392
Query: 371 EKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASF 430
+ +I + L TG L T+ GL LQQ +G++V AER+N LRF+S FRA+HRGA F
Sbjct: 393 GNHNGGEITRGMAYFLATGNLVTRVGLALQQESGFSVIAERINQLRFVSHFRAIHRGAFF 452
Query: 431 AGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRT 490
+RTT VRKL PE+WGF+CPVHTPDG PCGLLNH+T++CR+ ++ N+
Sbjct: 453 MEMRTTDVRKLRPEAWGFICPVHTPDGAPCGLLNHVTASCRIVTHLTDNSNVPA------ 506
Query: 491 SILRVLIGVGMIPSLPKLVKSGPPA--VLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSA 548
+L +GM K V PP + VL+DGR +G +P ++ + +LR KV+
Sbjct: 507 ----MLSELGMYTQ--KTVTLAPPGEELYPVLMDGRFIGYVPIAKAASIERYLRCAKVAK 560
Query: 549 ASVIPDDLEVGYVPLS-----LGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGP 603
+ IP E+ V S + YPG+Y+ + P + +RPVRN+++ + +E IG
Sbjct: 561 DARIPYTAEIALVRRSTDIKNIQTQYPGIYILSDPGRLIRPVRNLAMDT-----VEQIGT 615
Query: 604 FEQVFMEIRC-PDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQM 662
FEQV++ + P+ + G H+E+HP+ + S NL P+ DHNQSPRN+YQCQM
Sbjct: 616 FEQVYLSVVIDPEEAEPG-----VTMHQELHPSCLFSFAGNLIPFPDHNQSPRNVYQCQM 670
Query: 663 AKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGY 722
KQTMG +V + RAD K+Y LQ PQ P+++ Y KY +DEYP GTNA VAV++YTGY
Sbjct: 671 GKQTMGTAVHSWHSRADNKMYRLQFPQQPLLKLEAYEKYEMDEYPLGTNACVAVISYTGY 730
Query: 723 DMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSD 782
DMEDAM +NK+S RG HG + + E I+L + K + +F +N + + SD
Sbjct: 731 DMEDAMTINKASYQRGFAHGTVIKVERINLVTEREK----KTIFYKNPREEI--KTVGSD 784
Query: 783 GLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAV--DMKNSKNLPQKANI 840
GLP G+ E Y Y+ T ++T+ +E + V + + S N Q A I
Sbjct: 785 GLPIPGRRYFLDEVYYVTYNVETGDFKTHKFHYAEPAYCGLVRIVEQGEGSSNGSQHALI 844
Query: 841 RFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAM 900
++R RNPIIGDKF+SRHGQKG+ S LWP +PFS TGM PD+I NPH FPSRMTI M
Sbjct: 845 QWRIERNPIIGDKFASRHGQKGINSFLWPVESLPFSE-TGMVPDIIFNPHGFPSRMTIGM 903
Query: 901 LLESVAAK 908
++ES+A K
Sbjct: 904 MIESMAGK 911
>gi|1350832|sp|P28365.2|RPA2_EUPOC RecName: Full=DNA-directed RNA polymerase I subunit RPA2; Short=RNA
polymerase I subunit 2
gi|578407|emb|CAA47067.1| DNA-directed RNA polymerase [Euplotes octocarinatus]
Length = 1166
Score = 607 bits (1564), Expect = e-170, Method: Compositional matrix adjust.
Identities = 364/966 (37%), Positives = 530/966 (54%), Gaps = 105/966 (10%)
Query: 13 RELVRHHIESFDYMLDEGLSEMFDH----------------------------------- 37
+ + RHHI+SFD+ + L+ +H
Sbjct: 17 KNIARHHIDSFDFAMSTCLNRACEHMLPFDYIVPEESASCGFKKLTLWYDSFELGQPSLG 76
Query: 38 -------------CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCH 84
CRQ K++YT L A + ++ D V + G P M + + C+
Sbjct: 77 EIDYDSHILYPSECRQRKMTYTIPLFATIFKKFDD--EMVDNFKVKLGDIPTMGRKKFCN 134
Query: 85 LQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTD 144
L+G ++L E+ E GGYFI+NG E+V R +I+PK+N+P++ RS F +R + +TD
Sbjct: 135 LKGLTKKELAKRGEDMLEFGGYFIVNGNEKVIRMLIVPKRNFPIAFKRSKFLERGKDFTD 194
Query: 145 KAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNH 204
V +RCVR D ++ T+ L YL +GSV L Q +E+L+P+ ++LKAL + D +I+
Sbjct: 195 YGVQMRCVRDDFTAQTITLTYLSDGSVSLRLIYQKQEFLIPIILILKALKNCTDRQIYER 254
Query: 205 LTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQS 264
+ KG +S+RV+ ILA +DL++ Q IG F+ V+ G+ S
Sbjct: 255 IV----------KGNFNQRQISDRVEAILAVGKDLNIYDSDQSKALIGSRFRIVLAGITS 304
Query: 265 E-SYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILL 323
E S + + +I +H + KF+ LI M+ KL++ V + DN DS+ Q++LL
Sbjct: 305 ETSDIDAGDLFLSKHICIHTDSYEAKFDTLILMIDKLYASVANEVELDNLDSVAMQDVLL 364
Query: 324 PGHLITIYLKEKLEDWLRKG-KKLIQDEIENNGKKFDFFNLANIKKVMEKNPS-KQIGTS 381
GHL L EKL D L + + E++ + FD ++ + N IG
Sbjct: 365 GGHLYLQILSEKLFDCLHINLRARLNKELKRHN--FDPMKFRDVLTNQKINCGIGLIGKR 422
Query: 382 IETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKL 441
+E L TG L ++T LDL Q +G+ + ++LN +RF+S FR++HRG FA +TTSVRKL
Sbjct: 423 MENFLATGNLISRTNLDLMQTSGFCIIGDKLNNIRFLSHFRSIHRGQYFAEQKTTSVRKL 482
Query: 442 LPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGM 501
LPESWGF+CPVHTPDG PCGLLNH++ +C + + +I F +L +GM
Sbjct: 483 LPESWGFICPVHTPDGAPCGLLNHISMSCVPIGSEEKQIDIDKFRN-------ILGELGM 535
Query: 502 IPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAAS---VIPDDLEV 558
L + V+ DG +G + E V LR LK + + IP LE+
Sbjct: 536 NSISSDLCLNYHTGYYPVIFDGIHLGYVEKDIGESFVEGLRYLKCTQSQPDYAIPRTLEI 595
Query: 559 GYVPLS---LGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPD 615
++P S +PG++L ++P +F RPV+N+ IE I P EQ+ + I C D
Sbjct: 596 AFIPFSGYSRNLQWPGIFLASTPARFTRPVKNLHYNC-----IEWISPLEQMNLSIACTD 650
Query: 616 GGDGGRRNAFP-ATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQAL 674
+ P TH+E+ P +LS+VA++ ++++NQSPRNMYQCQMAKQTMG
Sbjct: 651 ------EDITPETTHQELDPINILSIVASVGVFAEYNQSPRNMYQCQMAKQTMGTPYHNH 704
Query: 675 KFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSS 734
+FR D K+Y L P PIV+T T + I+EYP+GTNA+VAV++YTGYD+EDAMI+NKSS
Sbjct: 705 QFRTDNKIYRLLFPHRPIVKTRTQVDFDIEEYPSGTNAVVAVISYTGYDLEDAMIINKSS 764
Query: 735 VDRGMCHGQIYQTETIDLSDDGNKVDRGQK-----LFRRNKDAKSLHSV----IDSDGLP 785
+RG HG +Y++ T DL++ ++ RG K F N K + ID DGLP
Sbjct: 765 YERGFGHGVVYKSYTHDLNESNSQSTRGIKSSVRYKFLNNVSQKDKSKIKLENIDPDGLP 824
Query: 786 YVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAV---DMKNSKNLPQKANIRF 842
+G + G+P I+D + + K SE ++ V V D KN NL IR+
Sbjct: 825 KIGSQLTKGKPELCIFDTLKRGAKLSKFKDSEKARIETVRVCGNDDKNPDNLSIGYTIRY 884
Query: 843 RHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLL 902
+R P+IGDKFSSRHGQKGV S LWP +DMPF+ G+ PDLIINPHAFPSRMT+ ML+
Sbjct: 885 --SRIPVIGDKFSSRHGQKGVLSVLWPQVDMPFTE-NGITPDLIINPHAFPSRMTMGMLI 941
Query: 903 ESVAAK 908
+S+AAK
Sbjct: 942 QSMAAK 947
>gi|403182650|gb|EJY57536.1| AAEL017010-PA [Aedes aegypti]
Length = 1129
Score = 603 bits (1554), Expect = e-169, Method: Compositional matrix adjust.
Identities = 352/954 (36%), Positives = 515/954 (53%), Gaps = 108/954 (11%)
Query: 10 EPLRELVRHHIESFDYMLDEGLSEMF---------------------------------- 35
E L L H++SF+YML+EG+ ++
Sbjct: 23 EILANLGTPHVDSFNYMLEEGIEDVIRRLEPVEFELPNKNRVRLRISDCSIAKPSVPLNQ 82
Query: 36 ----------DHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHL 85
CRQ +Y G M + + G P + GQ P+ML+++ C+L
Sbjct: 83 LNAKEKRIFPSECRQKNETYAG--MCTIVIDWDVNGQPKPPITKDIGQLPIMLRSKACNL 140
Query: 86 QGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDK 145
G Q+LV E E GG+FI+ GLE++ R +I+ ++NYP+++ R+S++DR + ++
Sbjct: 141 GGLSPQELVERMEHEDEWGGHFIVRGLEKLIRMIIMTRRNYPIALNRNSWKDRGKEFSST 200
Query: 146 AVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHL 205
V+IRCV+ DQ+S L+YL+NG+ +L F ++ +P+ +++KAL D EI+ L
Sbjct: 201 GVMIRCVKTDQTSTNNVLHYLVNGTAKLMFSIRKSLTFVPIVMLMKALSHYTDNEIYKRL 260
Query: 206 TCCY-DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQS 264
+ D++Y K ++ +L E+ + + +++C +IG F+ + L
Sbjct: 261 IAGFEDDQYYKHC-----------IQNMLRELHEEGIHNQVECKNYIGNVFRQKLYNL-- 307
Query: 265 ESYYAVAET---VIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEI 321
S+Y ET +++ + +HL+D+ DKFNLL+FM+QKLF+ + DS+ QE+
Sbjct: 308 PSWYTNEETADYLLKSCVLIHLDDDLDKFNLLVFMMQKLFTAAQGRCKPEGADSVMMQEL 367
Query: 322 LLPGHLITIYLKEKLEDWLRKGK----KLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQ 377
LL GHL L+E + +L K KL D D +L + +M +
Sbjct: 368 LLGGHLYQKLLREHMISFLTGVKYNILKLCSD---------DDAHLTQNEMLMACKNTAN 418
Query: 378 IGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS 437
S L TG + + + L Q +G + AE +N +R++S FRAVHRG+ F +RTT
Sbjct: 419 FDRSFSNFLATGNMPKASEMGLMQDSGLVIVAENINRMRYMSHFRAVHRGSFFVTMRTTE 478
Query: 438 VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLI 497
R+LLP++WGF+CPVHTPDG PCGLLNHMTS C V+ D K ++I LI
Sbjct: 479 ARQLLPDAWGFICPVHTPDGTPCGLLNHMTSDCMVSKSADR--------KKISNIEACLI 530
Query: 498 GVGMIPSLPKLVKS-GPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDL 556
GM P + SV+L+GR++G IP + V LR LK+ IP+
Sbjct: 531 RFGMTPINSIAFDTFNVGDSYSVMLEGRIIGHIPKNIAGVAVHKLRLLKIEGQE-IPEAT 589
Query: 557 EVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDG 616
E+ VP GG YPGLY+F + +RPV N+ ++ IELIG FEQV+M+I
Sbjct: 590 EIALVPSKEGGQYPGLYIFVGVARMMRPVMNLY-----ARKIELIGTFEQVYMDICITP- 643
Query: 617 GDGGRRNAFP--ATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQAL 674
++P TH E+ T LS +A L P D NQSPRNMYQCQM KQTMG
Sbjct: 644 -----EESYPNVTTHMELSKTSFLSNLAKLIPMPDCNQSPRNMYQCQMGKQTMGTPCHNW 698
Query: 675 KFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSS 734
+ + K Y LQTP TP+ R + +D Y GTNAIVAV++YTGYDMEDAMI+NKS+
Sbjct: 699 QQQCVSKFYRLQTPGTPLFRPVHHDNIDLDNYAMGTNAIVAVVSYTGYDMEDAMIINKSA 758
Query: 735 VDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPG 794
+RG HG IY+ E I+L +G F R+ ++L +D+DGLP+ +
Sbjct: 759 FERGFAHGNIYKNEFIEL--------KGDSFFARDPRNENLRPFLDNDGLPFKSAKLSLK 810
Query: 795 EPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKF 854
P +D +S+ G E VD V + S + P++A I FR RNP +GDKF
Sbjct: 811 TPLYCYFDTNDHSYHIVKFHGHEDAIVDNVKLCGSTSSSAPKRAVITFRIVRNPNVGDKF 870
Query: 855 SSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
+SR GQKG+CSQ WP +D+PF+ +GM PD+I NPH FPSRMTIAM++E++A K
Sbjct: 871 ASRAGQKGICSQKWPAVDLPFTE-SGMIPDIIFNPHGFPSRMTIAMMIETMAGK 923
>gi|308485788|ref|XP_003105092.1| hypothetical protein CRE_20709 [Caenorhabditis remanei]
gi|308257037|gb|EFP00990.1| hypothetical protein CRE_20709 [Caenorhabditis remanei]
Length = 1127
Score = 603 bits (1554), Expect = e-169, Method: Compositional matrix adjust.
Identities = 331/885 (37%), Positives = 518/885 (58%), Gaps = 61/885 (6%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CRQ ++Y G L ++ ++ G+ P+ML++ C+L+G ++LV+
Sbjct: 73 CRQRGLTYAGNLKVGIDVHVNGTRLDIIET--ILGKVPIMLRSEGCNLRGMSRKELVAAG 130
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
EE E GGYFI+NG E+V R +I ++N+P++++R +F+++ + +++ V++R V+++ +
Sbjct: 131 EEPIEKGGYFIVNGSEKVIRLLIANRRNFPIAIIRKTFKEKGKLFSEFGVMMRSVKENHT 190
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
+V + L+YL G+++L + + + +P+ V+KAL + ND I ++
Sbjct: 191 AVMMTLHYLDTGTMQLALQFRREIFYVPLMYVVKALTNKNDAVIMAGF----------KR 240
Query: 218 GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQS--ESYYAVAETVI 275
G S V +LA+ Q+ + + ++ IG F+ I + E + +I
Sbjct: 241 GRNQDQFFSSCVLNMLAQCQEEGILHQESAIRAIGSRFRVAIADRIAPWEDDLEAGKFII 300
Query: 276 RDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEK 335
R+ + VHL+ + +KF +L +M QKL +L+ + PD+ Q QE + GH++ + L+E+
Sbjct: 301 RECVLVHLDSDEEKFYMLAYMAQKLIALIKGECAPETPDNPQFQEASVSGHILLLILRER 360
Query: 336 LEDWLRKGKKLIQDEIENNGKKFDF-FNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQ 394
+E+ + +++ ++E + DF + I K + + +I + L TG L T+
Sbjct: 361 MENII----GVVRRKLEFMSSRKDFILTSSAILKALGNHTGGEITRGMAYFLATGNLVTR 416
Query: 395 TGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHT 454
GL LQQ +G++V AER+N LRF+S FRA+HRGA F +RTT VRKL PE+WGF+CPVHT
Sbjct: 417 VGLALQQESGFSVIAERINQLRFVSHFRAIHRGAFFMEMRTTDVRKLRPEAWGFICPVHT 476
Query: 455 PDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPP 514
PDG PCGLLNH+T++CR+ ++ +SI +L +GM K V PP
Sbjct: 477 PDGAPCGLLNHVTASCRIVTHLSDN----------SSIPSMLAELGMYTQ--KTVSLAPP 524
Query: 515 A--VLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLS-----LGG 567
+ VL+DGR +G +P ++ + +LR KV+ + IP E+ V S +
Sbjct: 525 GEELYPVLMDGRYIGYVPIAKAASIERYLRCAKVANDARIPYTTEIALVRRSTDIKNIQT 584
Query: 568 AYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRNAFP 626
YPG+Y+ T P + +RPVRN+++ S +E IG FEQV++ + P+ + G
Sbjct: 585 QYPGIYILTDPGRLIRPVRNLAMDS-----VEHIGTFEQVYLSVVLDPEEAEPG-----V 634
Query: 627 ATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQ 686
H+E+HP+ + S NL P+ DHNQSPRN+YQCQM KQTMG +V + RAD K+Y LQ
Sbjct: 635 TMHQELHPSCLFSFAGNLIPFPDHNQSPRNVYQCQMGKQTMGTAVHSWHSRADNKMYRLQ 694
Query: 687 TPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQ 746
PQ P+++ Y KY +DEYP GTNA VAV++YTGYDMEDAM +NK+S RG HG + +
Sbjct: 695 FPQQPMLKLEAYEKYEMDEYPLGTNACVAVISYTGYDMEDAMTINKASYQRGFAHGTVIK 754
Query: 747 TETIDLSDDGNKVDRGQKLFRRN--KDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKT 804
E I+L D + + +F +N +D K+ + +DGLP G+ E Y ++
Sbjct: 755 VERINLVTDRER----KTIFYKNPREDMKT----VSADGLPIPGRRYFLDEVYYVTFNME 806
Query: 805 TNSWRTNSRKGSESVFVDYV-AVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGV 863
T +R++ +E + V V+ S + Q A I++R RNPIIGDKF+SRHGQKG+
Sbjct: 807 TGDFRSHKFHYAEPAYCGMVRIVEQSESGSGAQHALIQWRIERNPIIGDKFASRHGQKGI 866
Query: 864 CSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
S LWP +PFS TGM PD+I NPH FPSRMTI M++ES+A K
Sbjct: 867 NSFLWPIESLPFSE-TGMVPDIIFNPHGFPSRMTIGMMIESMAGK 910
>gi|268561614|ref|XP_002646487.1| Hypothetical protein CBG19469 [Caenorhabditis briggsae]
Length = 1131
Score = 599 bits (1545), Expect = e-168, Method: Compositional matrix adjust.
Identities = 329/885 (37%), Positives = 513/885 (57%), Gaps = 60/885 (6%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CRQ ++Y G L +++ + ++ G+ P+ML++ CHL+G ++LV+
Sbjct: 73 CRQRGMTYAGNLKVNIDVHVNETRLDIIET--ILGKVPIMLRSEGCHLRGMSRKQLVAAG 130
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
EE E GGYFI+NG E+V R +I ++N+P++++R +F+++ + +++ V++R V+++ +
Sbjct: 131 EEPIEKGGYFIVNGSEKVIRLLIANRRNFPIAIIRKTFKEKGKLFSEFGVMMRSVKENHT 190
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
+V + ++YL G+++L + + + +P+ ++KAL + ND I +K
Sbjct: 191 AVMMTMHYLDTGTMQLALQFRREIFYIPMMYIVKALTNKNDAVISAEF----------KK 240
Query: 218 GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQS--ESYYAVAETVI 275
G + + +LA+ Q+ + + + IG F+ + E ++
Sbjct: 241 GRPKDQFFASCILNMLAQCQEEGILDQESAITAIGSRFRVAVSDRVGPWEKDIDAGRFIL 300
Query: 276 RDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEK 335
++ + +HL D+ +KF L +M QKL +LV + PD+ Q QE + GH++ + L+E+
Sbjct: 301 KECVLIHLEDDEEKFYTLAYMAQKLIALVKGECAPETPDNPQFQEASVSGHILLLILRER 360
Query: 336 LEDWLRKGKKLIQDEIENNGKKFDF-FNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQ 394
+E+ L +++ +IE + DF A I K + + +I + L TG L T+
Sbjct: 361 MENIL----GMVRRKIEFMSARQDFRLTSAQILKALGNHNGGEITRGMAYFLATGNLVTR 416
Query: 395 TGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHT 454
GL LQQ +G++V AER+N LRF+S FRA+HRGA F +RTT VRKL PE+WGF+CPVHT
Sbjct: 417 VGLALQQESGFSVIAERINQLRFVSHFRAIHRGAFFMEMRTTDVRKLRPEAWGFICPVHT 476
Query: 455 PDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPP 514
PDG PCGLLNH+T++C + ++ N+ TS+L L GM K V P
Sbjct: 477 PDGAPCGLLNHVTASCEIVTHLTDNSNV-------TSMLAEL---GMYTQ--KTVSMAPS 524
Query: 515 A--VLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLS-----LGG 567
+ VL+DG+ +G +P ++ + +LR KV+ + IP E+ V S +
Sbjct: 525 GEELYPVLMDGKFIGYVPIAKAASIERYLRCAKVAKDARIPYTAEIALVRRSTDIKNIQT 584
Query: 568 AYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRNAFP 626
YPG+Y+ + P + +RPVRN++L S +E IG FEQV++ + P+ + G
Sbjct: 585 QYPGIYILSDPGRLIRPVRNLALDS-----VEHIGTFEQVYLSVVLDPEEAEPG-----V 634
Query: 627 ATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQ 686
H+E+HP+ + S NL P+ DHNQSPRN+YQCQM KQTMG +V A RAD K+Y LQ
Sbjct: 635 TMHQELHPSCLFSFAGNLIPFPDHNQSPRNVYQCQMGKQTMGTAVHAWHTRADNKMYRLQ 694
Query: 687 TPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQ 746
PQ P+++ Y KY +DEYP GTNA VAV++YTGYDMEDAM +NK+S RG HG + +
Sbjct: 695 FPQQPMLKLEAYEKYQMDEYPLGTNACVAVISYTGYDMEDAMTINKASYQRGFAHGTVIK 754
Query: 747 TETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTN 806
E I+L + K + +F +N + + DGLP G+ E Y ++ T
Sbjct: 755 VERIELVTEREK----KTIFHKNPREEI--KTVGPDGLPIPGRRYFMDEVYYVTFNMETG 808
Query: 807 SWRTNSRKGSESVFVDYVAVDMKNSK---NLPQKANIRFRHTRNPIIGDKFSSRHGQKGV 863
+RT+ +E + V + ++NS+ Q A I++R RNPIIGDKF+SRHGQKG+
Sbjct: 809 DFRTHKFHYAEPAYCGMVRI-VENSEAPGGGAQHALIQWRIERNPIIGDKFASRHGQKGI 867
Query: 864 CSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
S LWP +PFS TGM PD+I NPH FPSRMTI M++ES+A K
Sbjct: 868 NSFLWPTESLPFSE-TGMVPDIIFNPHGFPSRMTIGMMIESMAGK 911
>gi|302847118|ref|XP_002955094.1| hypothetical protein VOLCADRAFT_95925 [Volvox carteri f.
nagariensis]
gi|300259622|gb|EFJ43848.1| hypothetical protein VOLCADRAFT_95925 [Volvox carteri f.
nagariensis]
Length = 1095
Score = 599 bits (1545), Expect = e-168, Method: Compositional matrix adjust.
Identities = 347/875 (39%), Positives = 490/875 (56%), Gaps = 120/875 (13%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR+ +Y G L+A +Q D V + G P+M+++R C L G +LV+ +
Sbjct: 113 CREGGTTYKGNLVATFNWQSGDGMEYTVERKL--GGMPIMVRSRACWLNGLTRGELVACR 170
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
EEA EMGGYFI NGLER+ R +IL +++Y M + R+++ R D
Sbjct: 171 EEANEMGGYFICNGLERIIRCLILQRRHYIMGLRRAAYHKR----------------DYK 214
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
+T+ ++ ++ ++G+ +D E++ L
Sbjct: 215 MMTMPMWVMV---------VRGQ---------------VSDRELYVKLVAGAAPGSGAAA 250
Query: 218 GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRD 277
++ER +++L + L T+ QC++++G HF+ V++ S + + V + ++R+
Sbjct: 251 ------FLAERAELLLRQADRPELRTKTQCIEYLGRHFRVVLEQPPSATDFEVGQVLLRE 304
Query: 278 YIFVHLNDNN--DKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEK 335
Y+F+HL+ DK LL+ ML KL++LV +V DNPD+L + EILLPGHL+ +LKE+
Sbjct: 305 YVFIHLDPERPADKLALLLAMLHKLYALVSGAAVEDNPDALTHHEILLPGHLLLKFLKER 364
Query: 336 LEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQT 395
LED L + LI ++ + + DF + + + V++K P IG E ++ TG L ++
Sbjct: 365 LEDALGTARGLILRDLASKPESVDFTSESYMHNVIKKLPD--IGQKFEYLINTGNLMSKD 422
Query: 396 GLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTP 455
GLDL Q G+TV AE+LNF R++S FR+VHRGA FA +RTT+VRKLLPESWGF+CPVHTP
Sbjct: 423 GLDLSQSTGFTVVAEKLNFFRYLSHFRSVHRGAYFAEMRTTTVRKLLPESWGFMCPVHTP 482
Query: 456 DGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPA 515
DG PCGLLNH T+ CR+ + + +M SIL+ L PP
Sbjct: 483 DGAPCGLLNHFTALCRIVTQGSDQPE-----RMEISILQA------------LETDTPPE 525
Query: 516 VLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLF 575
L G+ P+ + +P +EV ++P +GG YPG++LF
Sbjct: 526 RL---------GLSPAEQD-----------------VPYHMEVVHIPPLVGGPYPGIFLF 559
Query: 576 TSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIHPT 635
T + +RPV + S E++G EQ FM I+CPDGG GG TH E++ +
Sbjct: 560 TQTARMIRPVVQLG-----SGRREMLGSLEQCFMSIQCPDGGHGG-SPGLAYTHRELNAS 613
Query: 636 GMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRT 695
MLSVVA+LTPYSD NQSPRNMYQCQMAKQTMG QAL R D K+Y LQTPQ PI RT
Sbjct: 614 AMLSVVASLTPYSDFNQSPRNMYQCQMAKQTMGTPAQALAHRTDTKMYRLQTPQAPICRT 673
Query: 696 NTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDD 755
Y +Y +DE+P GTNAIVAVLAYTGYDMEDAMILNKS+V+RG+ H +Y+ ETI+L +
Sbjct: 674 IRYAEYKMDEFPNGTNAIVAVLAYTGYDMEDAMILNKSAVERGLAHASLYKVETINLRE- 732
Query: 756 GNKVDRGQK-LFRRNKDAKSLHSVIDSDGLPYVGQMIHP-GEPYCSIYDKTTNSWRTNSR 813
+RG K +F A H D L + + + G+ + +S +
Sbjct: 733 ----ERGFKGMF-----AAEPHDRRSRDALAHRTRPVGAFGQRFPQNIPAAADSPAVLRK 783
Query: 814 KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDM 873
+G V V N+++ R P +G GQKGV S LWPD+DM
Sbjct: 784 RGEAGGDNGPVLVPEPNNRD-----GDRIEPDGLPAVGSIIWP--GQKGVLSILWPDVDM 836
Query: 874 PFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
PF TG+RPDLIINPHAFPSRMTI ML+ES+ +K
Sbjct: 837 PFCASTGIRPDLIINPHAFPSRMTIGMLVESLVSK 871
>gi|302785610|ref|XP_002974576.1| hypothetical protein SELMODRAFT_101823 [Selaginella moellendorffii]
gi|300157471|gb|EFJ24096.1| hypothetical protein SELMODRAFT_101823 [Selaginella moellendorffii]
Length = 692
Score = 595 bits (1535), Expect = e-167, Method: Compositional matrix adjust.
Identities = 286/506 (56%), Positives = 363/506 (71%), Gaps = 38/506 (7%)
Query: 404 GYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLL 463
G++V AE+LNF RFIS FR+VHRGA FA RTTSVRKLLPESWGFLCPVHTPDGEPCGLL
Sbjct: 2 GFSVVAEKLNFFRFISHFRSVHRGAFFARQRTTSVRKLLPESWGFLCPVHTPDGEPCGLL 61
Query: 464 NHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDG 523
H++S C++++ D + +D + +I VL +GM+ P L SGPP L+VLLDG
Sbjct: 62 THLSSLCKISTDLDQNNHPKDPKVIHRTIATVLAQLGMVSISPLLALSGPPKYLAVLLDG 121
Query: 524 RVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVR 583
V+G +P I + V P DLE+GYVP + GAYPGL+L+T+P +F+R
Sbjct: 122 CVLGYMPVGNIPQTV--------------PIDLEIGYVPCTYAGAYPGLFLYTTPSRFLR 167
Query: 584 PVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRR-NAFPATHEEIHPTGMLSVVA 642
P +MEI CPDGG+ GR +A PATH E+HPT MLSVVA
Sbjct: 168 PA----------------------YMEIACPDGGNCGRTPSAPPATHIELHPTAMLSVVA 205
Query: 643 NLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYG 702
+LTP+SDHNQSPRNMYQCQM KQT+GF+ QALKFR D K+Y+LQ PQ+P+ R Y KY
Sbjct: 206 SLTPWSDHNQSPRNMYQCQMGKQTLGFASQALKFRTDHKMYNLQNPQSPVARNVNYKKYN 265
Query: 703 IDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRG 762
+DE+P GTNA+VAVLAYTG+DMEDAMI+NKSS++RG+ HGQIY+TE +DLS K D
Sbjct: 266 MDEFPLGTNAVVAVLAYTGFDMEDAMIMNKSSMERGLAHGQIYKTEHVDLSLLQKKSDGI 325
Query: 763 QKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVD 822
LF R +++H+ +D DGLP++GQ +H G+PYCS+ + T + + K +E+V +D
Sbjct: 326 VNLFSRPTGKRNIHNFLDVDGLPHIGQTMHNGDPYCSVLNTMTGDAKLHKLKAAENVVID 385
Query: 823 YVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMR 882
V + + + ++ QK ++FRH RNP+IGDKFSSRHGQKG+ SQLWPDIDMPFS VTGMR
Sbjct: 386 SV-IAIGHGRDPLQKIAVKFRHDRNPVIGDKFSSRHGQKGILSQLWPDIDMPFSAVTGMR 444
Query: 883 PDLIINPHAFPSRMTIAMLLESVAAK 908
PD+IINPHAFPSRMTI ML+ES+AAK
Sbjct: 445 PDIIINPHAFPSRMTIGMLMESMAAK 470
>gi|195118276|ref|XP_002003666.1| GI21635 [Drosophila mojavensis]
gi|193914241|gb|EDW13108.1| GI21635 [Drosophila mojavensis]
Length = 1122
Score = 595 bits (1533), Expect = e-167, Method: Compositional matrix adjust.
Identities = 335/879 (38%), Positives = 508/879 (57%), Gaps = 63/879 (7%)
Query: 39 RQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKE 98
RQ SY+G + + D P + + G PVML++ C+L A ++V E
Sbjct: 96 RQLHASYSGVCSVRLGWSVNDLEKPSIN--MDLGDVPVMLRSHACNLGSASPAEMVKHGE 153
Query: 99 EAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSS 158
+E GG F++ G E++ R +I+ ++NYP+ + RSS++DR +++ ++++ VR D+ S
Sbjct: 154 HDSEWGGIFVIRGNEKIVRMLIMTRRNYPICVKRSSWKDRGHNFSELGIMVQTVRDDEMS 213
Query: 159 VTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKG 218
+T L+YL NG+ R F + +PV ++LK L+D D +I+N C + Y+ ++
Sbjct: 214 LTNVLHYLNNGTARFMFSHVKRLSYVPVCLILKCLMDYTDEQIYN----CLVQGYESDQY 269
Query: 219 AVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIG----EHFQPVIDGLQSESYYAVAETV 274
+ V+ +L +VQ+ + T QC IG FQ V + + E AV E +
Sbjct: 270 YLTC------VQSMLRDVQNEGVYTSAQCRSFIGTLFRSRFQEVPEWMPDE---AVTEFI 320
Query: 275 IRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKE 334
IR+ I VHLN N +KF L++FM+QKLF +N DS QE+LLPGHL YL E
Sbjct: 321 IRERIMVHLNTNEEKFQLIVFMVQKLFQCAQGKFKVENVDSAMMQEVLLPGHLYQKYLGE 380
Query: 335 KLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQ 394
+LE WL +K + ++ + + + + M + + +G ++E+ L TG +A++
Sbjct: 381 RLEMWLMHLRKCLLKKLNTPD---SLVSSSIMTQCMRQ--AGGVGRAMESFLATGNVASR 435
Query: 395 TGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHT 454
TGL L Q G + AE +N +R++S FRA+HRG+ F +RTT R+LLP++WGF+CPVHT
Sbjct: 436 TGLGLMQSTGLVIMAENINRMRYMSHFRAIHRGSYFTTMRTTEARQLLPDAWGFICPVHT 495
Query: 455 PDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPP 514
PDG PCGLLNH+T TC ++ D K+ +I +L+ +GMIP L + G P
Sbjct: 496 PDGTPCGLLNHLTLTCEISKRPDP--------KLVQAIPSMLLEMGMIP----LSQQGQP 543
Query: 515 --AVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGL 572
+ V LDG+ +G I +E K+V LR K++ +P+ +E+G++P G +PGL
Sbjct: 544 DAKLYVVFLDGKHLGHIFQTEANKIVEDLRYAKITGK--VPEMMEIGFIPYKKNGQFPGL 601
Query: 573 YLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFP--ATHE 630
+L T P + +RPV N+ + +E IG EQ++MEI + + +P TH
Sbjct: 602 FLCTGPTRMMRPVWNLKW-----RRVEYIGTLEQLYMEIAIDE------KEMYPDFTTHL 650
Query: 631 EIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQT 690
E+ T +S +ANL P D+NQSPRNMYQCQM KQTMG +A KLY LQTP T
Sbjct: 651 ELSKTHFMSNLANLIPMPDYNQSPRNMYQCQMGKQTMGTPCLNWSKQAANKLYRLQTPAT 710
Query: 691 PIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETI 750
P+ R Y +D++ GTNAIVAV++YTGYDMEDAMI+NKS+ +RG +G IY+++ +
Sbjct: 711 PLFRPVHYDNIQLDDFAMGTNAIVAVISYTGYDMEDAMIINKSAYERGFAYGSIYKSKFV 770
Query: 751 DLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRT 810
LS + Q F R+ L +D+DGLP+ G + G P +D ++++
Sbjct: 771 QLS-------KKQSYFARHPHMPELIKHLDTDGLPHPGTKLSYGSPLYCYFDGEVSTYKV 823
Query: 811 NSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHTRNPIIGDKFSSRHGQKGVCSQLWP 869
E VD V + + + +P+K I R R IGDKF+SR GQKG+CSQ +P
Sbjct: 824 VKMDEKEDCIVDSVR-QLGSFEIMPRKTVCITLRVARPATIGDKFASRAGQKGICSQKYP 882
Query: 870 DIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
D+PF+ +G+ PD++ NPH FPSRMTIAM++E++A K
Sbjct: 883 AEDLPFTE-SGLIPDIVFNPHGFPSRMTIAMMIETMAGK 920
>gi|308800510|ref|XP_003075036.1| RNA polymerase III, second largest subunit (ISS) [Ostreococcus
tauri]
gi|116061590|emb|CAL52308.1| RNA polymerase III, second largest subunit (ISS) [Ostreococcus
tauri]
Length = 1128
Score = 594 bits (1531), Expect = e-167, Method: Compositional matrix adjust.
Identities = 357/882 (40%), Positives = 520/882 (58%), Gaps = 71/882 (8%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERF-NFGQFPVMLKTRRCHLQGADSQKLVSL 96
CR+ +Y K V + + G+ ++ R GQ PVM+++ C L +LV+
Sbjct: 105 CREVGETY--KTSMSVSYCWRLQGNDAMQRRVVQLGQCPVMVQSNVCSLARLCPAELVAF 162
Query: 97 KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQ 156
EEA E GGYFI+NG+ER+ R +I+ ++++ + + R +F R +
Sbjct: 163 GEEANEAGGYFIINGIERMIRMIIMQRRHHILGLRRRAFLKRSP-------------LSR 209
Query: 157 SSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKE 216
S T++L+Y+ NGS+++ F + +E+ +P G+VL++LV +D E+ H C +
Sbjct: 210 HSSTIRLHYMRNGSLKVAFQHRREEFFIPAGLVLRSLVACSDAEL--HERACMELLGTSS 267
Query: 217 KGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIR 276
V ER+ II E Q L + T++ L ++G+HF+ +++ SES AV E +R
Sbjct: 268 HEET---FVKERLAIIQEECQSLYIFTQISALSYLGQHFRTLLEASASESDAAVGERFLR 324
Query: 277 DYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKL 336
D IF+HL+ N DK +LL+ M+ KL +LV D+PDSL NQE+LLPG L+ ++EK+
Sbjct: 325 DTIFIHLSRNGDKLSLLLLMMNKLLTLVTGGCGPDDPDSLVNQEVLLPGLLLQKIVREKI 384
Query: 337 EDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTG 396
+ +K + + D +I +V+++ S IG ++E +L TG L + TG
Sbjct: 385 QISFQK--------VLTQIRGLDCRINEDIGRVIDETASLDIGKALEYILATGNLVSPTG 436
Query: 397 LDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPD 456
L L Q +G+T+ AE+LN+ R++S FR+VHRGA F LRTT+VRKLLPESWGFLCPVHTPD
Sbjct: 437 LGLSQASGFTIVAEKLNYFRYLSHFRSVHRGAYFMELRTTAVRKLLPESWGFLCPVHTPD 496
Query: 457 GEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPS--LPKLVKSGPP 514
G PCGLLNH+T C V D +R R +++ + ++ + + S P
Sbjct: 497 GSPCGLLNHLTEMCEVV-VPDKDPLVRS---ERLDLIKSKLAWALVDAEHRSRFHHSVP- 551
Query: 515 AVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPL-SLGGAYPGLY 573
V+++G +G I +++E+ VA LR K + + + E+ ++P+ G +PGLY
Sbjct: 552 ----VIVEGVHMGYISIADVERAVAALREAK-TGSQLSLQMTEICHIPVHGEHGLFPGLY 606
Query: 574 LFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIH 633
+F P + +RPV+ + + IEL+G EQ F+ I C + + F TH E+
Sbjct: 607 IFYGPSRLMRPVQQV-----HTGKIELVGTLEQSFLSI-CSLRKE--MNDIF--THSELK 656
Query: 634 PTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIV 693
T LS +A+LTP+SD NQSPRNMYQCQMAKQTMG + ++ FR+D KLY L TPQ P+
Sbjct: 657 MTSALSCIASLTPWSDFNQSPRNMYQCQMAKQTMGTPMHSICFRSDTKLYRLHTPQRPVA 716
Query: 694 RTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLS 753
T TY KY +D Y GTNA+VAVLAYTGYDMEDAMILNK S+ RG H +Y+T +
Sbjct: 717 LTYTYDKYALDNYALGTNAVVAVLAYTGYDMEDAMILNKGSLTRGFAHATLYKT----IV 772
Query: 754 DDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSR 813
+ +K ++ N + IDS G VG + PG ++ T SR
Sbjct: 773 ETASK----HEVIGMNASQSRTNEHIDSFGTVDVGSVASPGS---TVLRVNNGEGLTKSR 825
Query: 814 ----KGSESVFVDYV---AVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQ 866
KG++ VD V + K ++N+ ++A I FR+ RNP+IGDKFSSRHGQKGV S
Sbjct: 826 QIRIKGTDPAVVDRVVLTSTTQKGNQNV-KRAAITFRYDRNPVIGDKFSSRHGQKGVLSF 884
Query: 867 LWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
LWP+ DMPF TG+RPD+IINPHAFPSRMTI ML+ES+A+K
Sbjct: 885 LWPEEDMPFCERTGVRPDVIINPHAFPSRMTIGMLVESLASK 926
>gi|17506623|ref|NP_492476.1| Protein RPOA-2 [Caenorhabditis elegans]
gi|3875865|emb|CAA99827.1| Protein RPOA-2 [Caenorhabditis elegans]
Length = 1127
Score = 593 bits (1529), Expect = e-166, Method: Compositional matrix adjust.
Identities = 326/883 (36%), Positives = 509/883 (57%), Gaps = 57/883 (6%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CRQ ++Y G L ++ GS + G+ P+ML++ CHL+G ++LV
Sbjct: 73 CRQRGLTYAGNLKVGIDVHV--NGSRLDIIEIILGKVPIMLRSEGCHLRGMSRKELVVAG 130
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
EE E GGYFI+NG E+V R +I ++N+P++++R +F+++ + +++ V++R V+++ +
Sbjct: 131 EEPIEKGGYFIVNGSEKVIRLLIANRRNFPIAIIRKTFKEKGKLFSEFGVMMRSVKENHT 190
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
+V + L+YL G+++L + + + +P+ ++KAL D ND I ++
Sbjct: 191 AVMMTLHYLDTGTMQLALQFRREIFYVPLMYIVKALTDKNDAVISAGF----------KR 240
Query: 218 GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQS--ESYYAVAETVI 275
G S + +LA+ Q+ + + ++ IG F+ + + E +I
Sbjct: 241 GRNQDQFYSSCILNMLAQCQEEEILNQEAAIRAIGSRFRVAVSDRVAPWEDDLEAGRFII 300
Query: 276 RDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEK 335
R+ + +HL+ + +KF+ L +M QKL +LV + PD+ Q QE + GH++ + L+E+
Sbjct: 301 RECVLIHLDSDEEKFHTLAYMTQKLIALVKGECAPETPDNPQFQEASVSGHILLLILRER 360
Query: 336 LEDWLRKGKKLIQDEIENNGKKFDF-FNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQ 394
+E+ + +++ ++E + DF A I K + + +I + L TG L T+
Sbjct: 361 MENII----GMVRRKLEYMSSRKDFILTSAAILKALGNHTGGEITRGMAYFLATGNLVTR 416
Query: 395 TGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHT 454
GL LQQ +G++V AER+N LRF+S FRA+HRGA F +RTT VRKL PE+WGF+CPVHT
Sbjct: 417 VGLALQQESGFSVIAERINQLRFVSHFRAIHRGAFFMEMRTTDVRKLRPEAWGFICPVHT 476
Query: 455 PDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPP 514
PDG PCGLLNH+T++CR+ + N+ +L +GM K V PP
Sbjct: 477 PDGAPCGLLNHVTASCRIVTDLSDNSNVPS----------LLAELGMYTH--KTVALAPP 524
Query: 515 A--VLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLS-----LGG 567
+ VL++GR +G +P ++ + +LR KV+ + IP E+ V S +
Sbjct: 525 GEELYPVLMNGRFLGYVPITKAASIERYLRCAKVAKDARIPYTSEIALVRRSTDIKNIQT 584
Query: 568 AYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRNAFP 626
YPG+Y+ + + +RPVRN+++ + +E IG FEQV++ + P+ + G
Sbjct: 585 QYPGIYILSDAGRLIRPVRNLAMDA-----VEHIGTFEQVYLSVVLDPEEAEPG-----V 634
Query: 627 ATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQ 686
H+E+HP+ + S NL P+ DHNQSPRN+YQCQM KQTMG +V A RAD K+Y LQ
Sbjct: 635 TMHQELHPSCLFSFAGNLIPFPDHNQSPRNVYQCQMGKQTMGTAVHAWHSRADNKMYRLQ 694
Query: 687 TPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQ 746
PQ P+++ Y KY +DEYP GTNA VAV++YTGYDMEDAM +NK+S RG HG + +
Sbjct: 695 FPQQPMLKLEAYEKYEMDEYPLGTNACVAVISYTGYDMEDAMTINKASYQRGFAHGTVIK 754
Query: 747 TETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTN 806
E I+L + + + +F RN + + DGLP G+ E Y ++ T
Sbjct: 755 VERINLVTERER----KTIFYRNPREEI--KTVGPDGLPIPGRRYFLDEVYYVTFNMETG 808
Query: 807 SWRTNSRKGSESVFVDYV-AVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCS 865
+RT+ +E + V V+ + + A I++R RNPIIGDKF+SRHGQKG+ S
Sbjct: 809 DFRTHKFHYAEPAYCGLVRIVEQGEGDSGAKHALIQWRIERNPIIGDKFASRHGQKGINS 868
Query: 866 QLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
LWP +PFS TGM PD+I NPH FPSRMTI M++ES+A K
Sbjct: 869 FLWPVESLPFSE-TGMVPDIIFNPHGFPSRMTIGMMIESMAGK 910
>gi|403339388|gb|EJY68951.1| DNA-directed RNA polymerase I subunit RPA2 [Oxytricha trifallax]
Length = 1189
Score = 593 bits (1528), Expect = e-166, Method: Compositional matrix adjust.
Identities = 351/910 (38%), Positives = 513/910 (56%), Gaps = 89/910 (9%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR ++Y+ L A + + +D P + G PVM+++ CHL G ++LV
Sbjct: 121 CRIRSLTYSAPLYATIA-RKID-NEPEEKVTVPLGDIPVMIRSSNCHLYGLTEEELVKKH 178
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
E+ AE GGYFI+NG ER+ R +I+ K+NYP++ R +F +R + +T AV +RCVR D
Sbjct: 179 EDMAEFGGYFIINGNERIVRMLIMTKRNYPVAFSRPTFINRGKLFTPFAVQMRCVRDDLF 238
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
+ TL L+YL +G+ + Q +E+L+P ++LKAL D D +I+N L K
Sbjct: 239 AQTLTLHYLSDGNCSMRLIYQKQEFLIPAYVILKALADVTDAQIYNKLV----------K 288
Query: 218 GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSE-SYYAVAETVIR 276
G + + +RV+++L + L L ++ QCL ++G F+ + G+QS+ S V I+
Sbjct: 289 GYFKNRQIGDRVEVLLQDGNKLCLYSQNQCLAYLGSRFRMALIGVQSDMSDIDVGNFFIQ 348
Query: 277 DYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKL 336
++FV N+ DKFN L M++KL+++V DN DS NQE+LL GHL L EKL
Sbjct: 349 RHLFVQTNNYKDKFNTLCIMIEKLYAVVAQECELDNLDSPSNQEVLLSGHLYASLLAEKL 408
Query: 337 EDWLRKGK-KLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQT 395
+D L K K+I+D N + N +KK+++ S +G +E L TG L ++T
Sbjct: 409 QDLLIGAKAKIIRDLRNPNFDRQQIRNPIYMKKMIDTQVS--VGKKMEHFLATGNLISRT 466
Query: 396 GLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTP 455
LDL ++HRG FA ++TT+VRKLLPE+WGFLCPVHTP
Sbjct: 467 NLDL----------------------ISIHRGQYFAEMKTTTVRKLLPEAWGFLCPVHTP 504
Query: 456 DGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPA 515
DG PCGLLNH+TS+C + D G + + + +L +GM P P
Sbjct: 505 DGGPCGLLNHITSSCIPLAKED--GLLCRQGEALKNFKSLLAQLGMNPISSDFGLIYPYK 562
Query: 516 VLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASV------IPDDLEVGYV-------- 561
L +LLDG ++G + ++V LR LK+ ++ +P LEV Y+
Sbjct: 563 FLPILLDGVLLGYVDPEVAPQLVKSLRALKIQQSNTNQFYESVPKTLEVSYLAPTFPPEE 622
Query: 562 ----PLSLGGA---------YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVF 608
P + G +PG++L +S +FVRPV+N+ E +E IGP EQV
Sbjct: 623 ASDNPETQGQTNKRGTKNKFFPGIFLASSVSRFVRPVQNL-----EVGGVEWIGPLEQVN 677
Query: 609 MEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMG 668
+ I C + + R + TH+EI P +LS++A+ P++D+NQSPRNMYQCQMAKQTMG
Sbjct: 678 LSIACLE--EDIRSDT---THQEIDPINVLSMIASTIPFADYNQSPRNMYQCQMAKQTMG 732
Query: 669 FSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAM 728
+R D K+Y + PQ P+VRT Y Y +YP+GTNA+VAV++YTGYDMEDAM
Sbjct: 733 TPYHNHPYRMDNKVYRILFPQEPLVRTENYNNYDFRQYPSGTNAVVAVISYTGYDMEDAM 792
Query: 729 ILNKSSVDRGMCHGQIYQTETIDLSDD--GNKVDR------GQKLFRRNKDAKSLHSVID 780
I+NKS+ +RG HG +Y++ ++++ G + Q +R ++ +D
Sbjct: 793 IINKSAYERGFGHGCVYKSYIKEVNEQVMGASSSKQRYRMLNQNKYREDQKIDLKEKNLD 852
Query: 781 SDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANI 840
+DG+P +G + G P YD + S K +E V+ V + M + K NI
Sbjct: 853 TDGIPSIGHQLTHGSPELCTYDTVLGKPKYVSFKDNEPARVENVRL-MGDEKGSANNVNI 911
Query: 841 RF--RHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTI 898
+ R+ RNP+IGDKFSSRHGQKGV S LWP DMPF+ +G+ PD+IINPHAFPSRMTI
Sbjct: 912 GYTIRYERNPVIGDKFSSRHGQKGVLSVLWPQEDMPFTE-SGISPDIIINPHAFPSRMTI 970
Query: 899 AMLLESVAAK 908
ML+ES+A K
Sbjct: 971 GMLVESIAGK 980
>gi|167393760|ref|XP_001740696.1| DNA-directed RNA polymerase I subunit RPA2 [Entamoeba dispar
SAW760]
gi|165895066|gb|EDR22870.1| DNA-directed RNA polymerase I subunit RPA2, putative [Entamoeba
dispar SAW760]
Length = 1106
Score = 592 bits (1525), Expect = e-166, Method: Compositional matrix adjust.
Identities = 342/945 (36%), Positives = 516/945 (54%), Gaps = 92/945 (9%)
Query: 12 LRELVRHHIESFDYMLDEGLSEMFDH---------------------------------- 37
L+EL R H ESF+Y L++G ++ +
Sbjct: 11 LKELTRAHTESFNYFLEKGKEDILKYMKKYKIIKKDSTELMELSCTGISIEKPRYNGLPL 70
Query: 38 ----CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHL--QGADSQ 91
CR A ++Y+GK+ + + + + + G+ P+M+ T +C + + +
Sbjct: 71 FPYMCRSAALTYSGKIRLTITIKENETSKTI---EVDGGEIPIMVGTSKCWIGSEYITPE 127
Query: 92 KLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRC 151
+ ++++E+ E+GGYFI+NG+ER R ++ K N+P++++R S+ ++ +T ++IRC
Sbjct: 128 ERINIREDPHEIGGYFIINGIERYLRMIVYAKANHPLAVIRPSWTNKGAHFTKYGIIIRC 187
Query: 152 VRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDE 211
+R+D +++T L++L NG V L F + +E+ +PV ++L+ +D EIF +T E
Sbjct: 188 MREDITTLTNTLHFLDNGKVTLRFIFKKQEFFIPVVLLLRVYGGMSDREIFELITMNNYE 247
Query: 212 KYKKEKGAV-------GSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQS 264
A GSPL L T Q L +IG F+ ++D +
Sbjct: 248 NSNLVNAAEMLVRRENGSPLNG--------------LNTPEQVLSYIGSKFRLIMDSTEG 293
Query: 265 ESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLP 324
+ + + V+ ++ VHL+ ++K +LLIFMLQKLF+LV + D+ +Q +LLP
Sbjct: 294 VNDIELGKRVLEEFCLVHLSSYSEKSDLLIFMLQKLFALVHGEIDEEGVDTPMSQGVLLP 353
Query: 325 GHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIET 384
GHL +KE++++ L K + I ++++ K +++++ N +K GT I++
Sbjct: 354 GHLYQTVIKEEIQNILSKARLFILKDLKDVKKGSKITERVYLQRIL-SNVAKSFGTRIKS 412
Query: 385 MLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPE 444
+ TG T + DLQQ G+++ AERLN RF S F +VHRGA + ++TTS+RKL+PE
Sbjct: 413 FISTGNFETSSTTDLQQTNGFSITAERLNHSRFTSHFVSVHRGAFYTTMKTTSIRKLVPE 472
Query: 445 SWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPS 504
+WGF+CPVHTPDG PCGLLNH +CR+ N R I+ + +GM+ +
Sbjct: 473 AWGFMCPVHTPDGAPCGLLNHFAVSCRI--------NARKHPLPEQKIIDLCTELGMVST 524
Query: 505 -LPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPL 563
KL P + VLL+G+V+G + EI V LR + IP+ LE+GY
Sbjct: 525 QFMKL----PSIYIPVLLNGKVIGKVSPHEINSFVQQLRYERAIYNPKIPNTLEIGYCDG 580
Query: 564 SLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRN 623
L Y LYL P + +RPV + + NI IGP+EQVF++I+C D +G
Sbjct: 581 YLQDGYHALYLNNLPGQMIRPVIH-----RATGNIVNIGPYEQVFLDIKCGDSIEGMNN- 634
Query: 624 AFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLY 683
A +EEI LS++A LTP+ NQSPRNMYQCQMAKQTMG + K+R+D KL
Sbjct: 635 ---AEYEEISALNSLSLLATLTPFCHMNQSPRNMYQCQMAKQTMGIPALSNKYRSDTKLL 691
Query: 684 HLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQ 743
L PQ I + +G +EYPTG NAIVAV++YTGYDMEDA+I+ KS+++RG HG
Sbjct: 692 WLHYPQRSICQCALMEPFGFNEYPTGANAIVAVISYTGYDMEDALIIKKSAIERGFGHGS 751
Query: 744 IYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDK 803
Y+ +D +G K + + + +D DGLP G+ I P S DK
Sbjct: 752 QYKAYKVDFEKEGEKNEMFSGI---TSSGEIFDEHLDDDGLPRPGE-IFENSPIYSHIDK 807
Query: 804 TTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGV 863
T + G V N + QKA +R R+ R P+IGDKFSSRHGQKG
Sbjct: 808 ITGKIKGKVLMGERGYIESVRIVGGDNIDSGLQKAVVRVRYNRTPVIGDKFSSRHGQKGT 867
Query: 864 CSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
S + + DMPF+ +GM PD+IINPHAFPSRMTIAML+ES+A+K
Sbjct: 868 LSLHYQEKDMPFTE-SGMTPDIIINPHAFPSRMTIAMLVESMASK 911
>gi|328704219|ref|XP_001948731.2| PREDICTED: DNA-directed RNA polymerase I subunit RPA2-like
[Acyrthosiphon pisum]
Length = 1121
Score = 592 bits (1525), Expect = e-166, Method: Compositional matrix adjust.
Identities = 338/948 (35%), Positives = 529/948 (55%), Gaps = 98/948 (10%)
Query: 12 LRELVRHHIESFDYMLDEGLSEM--------FD--------------------------- 36
L+EL HI+SF+YM++EGL+ FD
Sbjct: 25 LQELGTPHIDSFNYMIEEGLNLAISDLLPVEFDTKGKYRVKLTLLEATIHQPRVPTGSLG 84
Query: 37 ---------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQG 87
CRQ +Y+G+L + ++ D ++ + GQ P+MLK++ CHL+
Sbjct: 85 VKSHSIYPLECRQRHGTYSGRLEIKLSWRINDVEQMIIDR--DIGQVPIMLKSKLCHLEK 142
Query: 88 ADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAV 147
++LV L E E GGYFI+ G ER+ R ++ ++N+P ++ R++++++ + ++D +
Sbjct: 143 MSPKQLVKLGEHQDEWGGYFIVKGKERLVRLLLGTRRNFPTAVQRNTWKNKDQFFSDIGI 202
Query: 148 VIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTC 207
+IRCV+ D ++VT L+YL NG+ +L ++ + + P+ ++++ L +++D IF H+
Sbjct: 203 LIRCVKDDLTTVTNNLHYLTNGTAKLMIPIKKRVFYAPIFLIMRCLTNSSDEFIFRHII- 261
Query: 208 CYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGL-QSES 266
KG V ++ + + ++ + ++IG F+P L + ++
Sbjct: 262 ---------KGHEDDLYFIRSVMEMMRSLHESNIHCQEDAKEYIGILFRPRFYELPEWKT 312
Query: 267 YYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGH 326
V + ++R Y+ +HLN + DK LL+FMLQKLFS+ + + + D + QE++L GH
Sbjct: 313 NKEVCDHMLRSYVLIHLNTDFDKLKLLVFMLQKLFSVAQNKCLIEGADGIMMQELMLGGH 372
Query: 327 LITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEK-NPSKQIGTSIETM 385
L LKEKL+ WL + ++ N K D +I +M I ++
Sbjct: 373 LYLKILKEKLQTWL--------NLVKINLLKVDQGGQPSIGDMMTALRRCDLIEHAMTNF 424
Query: 386 LKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPES 445
TG L +Q+GL +QQ G T+ E ++ +R+++ FRAVHRGA F +RTT R+LLP++
Sbjct: 425 FATGNLNSQSGLGMQQDKGLTILVENISRMRYMAHFRAVHRGAIFESMRTTEPRRLLPDA 484
Query: 446 WGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSL 505
WGF+CPVHTPDG PCGLLNH+T +C V SR +RD K VL+ +GM +
Sbjct: 485 WGFICPVHTPDGTPCGLLNHLTKSCIVTKSI-SRKVLRDIPK-------VLVSLGMCEAS 536
Query: 506 PKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPL-- 563
K V +V+LDGR++G +P + + LR LKV IP+ E+ ++
Sbjct: 537 YKPQDINIGFVYNVILDGRIIGYVPETLTALFIRKLRTLKVKGKQ-IPETTEIVWLQKKE 595
Query: 564 -SLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRR 622
++ G +PGL+LFT + +RPV N+ L + IELIG FEQV+++I + D R
Sbjct: 596 ENILGQFPGLFLFTGNARMMRPVFNLDL-----EQIELIGTFEQVYLDISISE--DEIRP 648
Query: 623 NAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKL 682
N ++ E+ T LS +A L P D+NQSPRNMYQCQM KQTMG + +++ KL
Sbjct: 649 NI--TSYREVTKTDFLSHLACLIPLPDYNQSPRNMYQCQMGKQTMGTACHNWHLQSETKL 706
Query: 683 YHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHG 742
Y +Q+P +P+ R Y +D++P GTNA++AV++YTGYDMEDAMI+NK ++DRG HG
Sbjct: 707 YRIQSPASPLFRPVHYDALSMDDFPMGTNAVIAVISYTGYDMEDAMIINKMALDRGFAHG 766
Query: 743 QIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYD 802
I++TE I+ + F R+ + L + + DGLP++G + G PY S +D
Sbjct: 767 SIFKTELIE--------TKPHTYFMRDPFKEDLPNFLGVDGLPHIGLKLSKGTPYYSYFD 818
Query: 803 KTTNSWRTNSRKGSESVFVDYV--AVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQ 860
+ + +E V VD V D + +P KA I R RNP +GDKF+SR GQ
Sbjct: 819 EQIQGFIIAKYLSNEEVIVDSVRQCGDFTTGRKIPNKATITVRVQRNPTVGDKFASRAGQ 878
Query: 861 KGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
KG+ S+ WP D+PF+ +GM PD++ NPH FPSRMTIAM++E +A K
Sbjct: 879 KGIFSKGWPAEDLPFTE-SGMVPDIVFNPHGFPSRMTIAMMIECMAGK 925
>gi|110740195|dbj|BAF01996.1| putative DNA-directed RNA polymerase subunit [Arabidopsis thaliana]
Length = 578
Score = 590 bits (1521), Expect = e-165, Method: Compositional matrix adjust.
Identities = 276/358 (77%), Positives = 314/358 (87%), Gaps = 5/358 (1%)
Query: 551 VIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFME 610
+IP+DLEVGYVP S+GG+YPGLYL + P +F+RPV+NIS+PS+ NIELIGPFEQVFME
Sbjct: 1 LIPEDLEVGYVPTSMGGSYPGLYLASCPARFIRPVKNISIPSD---NIELIGPFEQVFME 57
Query: 611 IRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFS 670
I CPDGG+GGR N+ ATHEEIHPTGM+SVVANLTP+SDHNQSPRNMYQCQMAKQTM +S
Sbjct: 58 ISCPDGGNGGRNNSSLATHEEIHPTGMISVVANLTPWSDHNQSPRNMYQCQMAKQTMAYS 117
Query: 671 VQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMIL 730
QAL+FRADQK+YHLQTPQ+P+VRT TYT Y IDE PTGTNAIVAVLA+TG+DMEDAMIL
Sbjct: 118 TQALQFRADQKIYHLQTPQSPVVRTKTYTTYSIDENPTGTNAIVAVLAHTGFDMEDAMIL 177
Query: 731 NKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQM 790
NKSSV+RGMCHGQIYQTE IDLSD ++ D G K FRR+ + K+ H ID+DGLP VGQ
Sbjct: 178 NKSSVERGMCHGQIYQTENIDLSDQNSRFDSGSKSFRRSTN-KAEHFRIDADGLPSVGQK 236
Query: 791 IHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPII 850
++P EPYCSIYD+ TN R RKG++ V VD+V+VDMK SK PQ+ANIRFRH RNPII
Sbjct: 237 LYPDEPYCSIYDEVTNKTRHMKRKGTDPVIVDFVSVDMK-SKKHPQRANIRFRHARNPII 295
Query: 851 GDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
GDKFSSRHGQKGVCSQLWPDIDMPF+GVTGMRPDLIINPHAFPSRMTIAMLLES+AAK
Sbjct: 296 GDKFSSRHGQKGVCSQLWPDIDMPFNGVTGMRPDLIINPHAFPSRMTIAMLLESIAAK 353
>gi|195437584|ref|XP_002066720.1| GK24411 [Drosophila willistoni]
gi|194162805|gb|EDW77706.1| GK24411 [Drosophila willistoni]
Length = 1122
Score = 590 bits (1521), Expect = e-165, Method: Compositional matrix adjust.
Identities = 334/875 (38%), Positives = 507/875 (57%), Gaps = 55/875 (6%)
Query: 39 RQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKE 98
RQ SY G M + + G + G+ P+ML+++ C+L GA +++V E
Sbjct: 96 RQLHASYMG--MCSIRLAWQVNGLQKTSINMDLGEVPIMLRSKACNLGGASPKEMVQHGE 153
Query: 99 EAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSS 158
+E GG FI+ G E++ R ++L ++N+P+ + RSS++DR ++D V+++ VR D+SS
Sbjct: 154 HDSEWGGIFIIRGNEKIVRMLVLTRRNHPICVKRSSWKDRGHNFSDLGVLVQTVRADESS 213
Query: 159 VTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKG 218
+ L+YL NGS R F + +PV ++LK L+D D EI+N L + Y+ ++
Sbjct: 214 FSNVLHYLNNGSARFMFSHVKRLSYVPVCLILKCLMDYTDEEIYNRLI----QGYETDQY 269
Query: 219 AVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGL-QSESYYAVAETVIRD 277
+ V+ +L +VQ+ + T QC IG F+ I + + E AV + ++R+
Sbjct: 270 YISC------VQTMLRDVQNEGVYTHAQCRNFIGTLFRSRIAEVPEWEPAEAVTDFILRE 323
Query: 278 YIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLE 337
I VHL+ DKF L++FM+QKLF +N DS QE+LLPGHL YL E++E
Sbjct: 324 RIMVHLDSYEDKFQLIVFMVQKLFQCAQGKYKVENVDSAMMQEVLLPGHLYQKYLGERIE 383
Query: 338 DWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGL 397
W+ + +K + ++ + + + + M + + +G SIE+ L TG +A+++GL
Sbjct: 384 MWMFQLRKCLLKKLTTPDA---LLSSSTLTQCMRQ--AGGVGRSIESFLATGNIASRSGL 438
Query: 398 DLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDG 457
L Q +G + AE +N +R++S FRA+HRG+ F +RTT R+LLP++WGF+CPVHTPDG
Sbjct: 439 GLMQNSGLVIMAENINRMRYMSHFRAIHRGSYFTTMRTTEARQLLPDAWGFVCPVHTPDG 498
Query: 458 EPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVL 517
PCGLLNH+T TC ++ D K+ +I LI +GM LP + P + L
Sbjct: 499 TPCGLLNHLTLTCEISKRPDP--------KLVKAIPAKLIEMGM---LPLSHRPQPESKL 547
Query: 518 SVL-LDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFT 576
V+ LDGR +G I S+ K+V LR K+ +P LE+G++P G +PGL+L T
Sbjct: 548 YVVFLDGRHLGHIYQSDATKIVEDLRYGKIMGE--LPKMLEIGFIPFKKNGQFPGLFLAT 605
Query: 577 SPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFP--ATHEEIHP 634
SP + +RPV N+ Q +E IG EQ++MEI + + +P TH E+
Sbjct: 606 SPARMMRPVWNLKW-----QRVEYIGTLEQLYMEIAIDE------KEMYPDFTTHLELAK 654
Query: 635 TGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVR 694
T +S +ANL P D+NQSPRNMYQCQM KQTMG +A KLY LQTP TP+ R
Sbjct: 655 THFMSNLANLIPMPDYNQSPRNMYQCQMGKQTMGTPCLNWPKQAANKLYRLQTPGTPLFR 714
Query: 695 TNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSD 754
+ +D++ GTNAIVAV++YTGYDMEDAMI+NK++ +RG +G IY+++ + L
Sbjct: 715 PVHHDNIQLDDFAMGTNAIVAVISYTGYDMEDAMIINKAAYERGFAYGSIYKSKFVQLP- 773
Query: 755 DGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRK 814
+ F R+ L +D+DGLP+ G + G P +D +++
Sbjct: 774 ------KKSSYFARHPHMPELQKYLDTDGLPHPGTKLSYGCPMYCYFDGEVATYKVMKMD 827
Query: 815 GSESVFVDYVAVDMKNSKNLPQKA-NIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDM 873
E FVD + + + + P+K+ I R R IGDKF+SR GQKG+CSQ +P D+
Sbjct: 828 EKEDCFVDSIR-QLGSFELQPRKSVCITLRVPRPATIGDKFASRAGQKGICSQKYPAEDL 886
Query: 874 PFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
PF+ +G+ PD++ NPH FPSRMTIAM++E++A K
Sbjct: 887 PFTE-SGLIPDIVFNPHGFPSRMTIAMMIETMAGK 920
>gi|195470252|ref|XP_002087422.1| GE16780 [Drosophila yakuba]
gi|194173523|gb|EDW87134.1| GE16780 [Drosophila yakuba]
Length = 1129
Score = 588 bits (1517), Expect = e-165, Method: Compositional matrix adjust.
Identities = 330/879 (37%), Positives = 505/879 (57%), Gaps = 63/879 (7%)
Query: 39 RQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKE 98
RQ ISY+G M V + G + G+ P+ML+++ C+L A +++V E
Sbjct: 103 RQLHISYSG--MCSVRLGWSVNGVEKSPINMDLGEVPIMLRSKACNLGQATPEEMVKHGE 160
Query: 99 EAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSS 158
+E GG F++ G E++ R +I+ ++N+P+ + RSS++DR + ++D ++++ VR+D+SS
Sbjct: 161 HDSEWGGIFVIRGNEKIVRMLIMTRRNHPICVKRSSWKDRGQNFSDLGMLVQTVREDESS 220
Query: 159 VTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKG 218
++ ++YL NG+ + F + +PV ++LK L+D D EI+N L KG
Sbjct: 221 LSNVVHYLNNGTAKFMFSHVKRLSYVPVCLILKCLMDFTDEEIYNRLV----------KG 270
Query: 219 AVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQ---PVIDGLQSESYYAVAETVI 275
V+ +L EVQ+ ++ T QC IG F+ P + Q + V + ++
Sbjct: 271 YESDQYYVSCVQSMLREVQNENVYTHAQCKSFIGNLFRARFPEVPEWQPDE--DVTDFIL 328
Query: 276 RDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEK 335
R+ + +HL++ DKF L++FM+QKLF +N DS QE+LLPGHL YL E+
Sbjct: 329 RERVMIHLDNYEDKFQLIVFMIQKLFQCAQGKYKVENVDSAMMQEVLLPGHLYQKYLGER 388
Query: 336 LEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQT 395
+E W+ + ++ +Q ++ + A + + M + + +G +IE+ L TG +A++T
Sbjct: 389 VESWVSQVRRCLQKKLTSPDA---LLTSAVMTQCMRQ--AGGVGRAIESFLATGNIASRT 443
Query: 396 GLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTP 455
GL L Q +G + AE +N +R++S FRA+HRG+ F +RTT R+LLP++WGF+CPVHTP
Sbjct: 444 GLGLMQNSGLVIMAENINRMRYMSHFRAIHRGSYFTTMRTTEARQLLPDAWGFICPVHTP 503
Query: 456 DGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPA 515
DG PCGLLNH+T TC ++ +R K+ +I LI +GMIP L SG
Sbjct: 504 DGTPCGLLNHLTLTCEIS--------MRPDPKLVKAIPTQLIDMGMIP-LSNRSYSGE-K 553
Query: 516 VLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLF 575
+ V LDG+ +G I SE K+V LR K+ +P +E+G++P G +PGLYL
Sbjct: 554 LYVVFLDGKHLGHIHQSEANKIVDDLRYGKIFGT--LPQMMEIGFIPFKKNGQFPGLYLA 611
Query: 576 TSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFP--ATHEEIH 633
T P + +RPV N+ +E IG EQ++MEI ++ +P TH E+
Sbjct: 612 TGPARMMRPVWNLKW-----NKVEYIGTLEQLYMEIAI------DQKEMYPDFTTHLELA 660
Query: 634 PTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIV 693
T +S +ANL P D+NQSPRNMYQCQM KQTMG +A KLY LQTP TP+
Sbjct: 661 KTHFMSNLANLIPMPDYNQSPRNMYQCQMGKQTMGTPCLNWPKQAANKLYRLQTPATPLF 720
Query: 694 RTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLS 753
R Y +D++ GTNAIVAV++YTGYDMEDAMI+NK++ +RG +G IY+T+ + L
Sbjct: 721 RPVHYDNIQLDDFAMGTNAIVAVISYTGYDMEDAMIINKAAYERGFAYGSIYKTKFLTL- 779
Query: 754 DDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSR 813
D+ F R+ L +D+DGLP+ G + G P +D +++
Sbjct: 780 ------DKKSSYFARHPHMPELVKHLDTDGLPHPGSKLSYGSPLYCYFDGEVATYKVVKM 833
Query: 814 KGSESVFVDYV----AVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWP 869
E V+ + + D+ K + I R R IGDKF+SR GQKG+CSQ +P
Sbjct: 834 DEKEDCIVESIRQLGSFDLSPKKTVA----ITLRVPRPATIGDKFASRAGQKGICSQKYP 889
Query: 870 DIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
D+PF+ +G+ PD++ NPH FPSRMTIAM++E++A K
Sbjct: 890 AEDLPFTE-SGLIPDIVFNPHGFPSRMTIAMMIETMAGK 927
>gi|194853433|ref|XP_001968165.1| GG24715 [Drosophila erecta]
gi|190660032|gb|EDV57224.1| GG24715 [Drosophila erecta]
Length = 1129
Score = 588 bits (1516), Expect = e-165, Method: Compositional matrix adjust.
Identities = 330/879 (37%), Positives = 508/879 (57%), Gaps = 63/879 (7%)
Query: 39 RQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKE 98
RQ ISY+G M V + G + G+ P+ML+++ C+L A +++V E
Sbjct: 103 RQLHISYSG--MCSVRLGWTVNGVEKSAINMDLGEVPIMLRSKACNLGQASPEEMVKHGE 160
Query: 99 EAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSS 158
+E GG F++ G E++ R +I+ ++N+P+ + RSS++DR + ++D ++++ VR+D+SS
Sbjct: 161 HDSEWGGIFVIRGNEKIVRMLIMTRRNHPICVKRSSWKDRGQNFSDLGMLVQTVREDESS 220
Query: 159 VTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKG 218
++ ++YL NG+ + F + +PV ++LK L+D D EI+N L + Y+ ++
Sbjct: 221 LSNVVHYLNNGTAKFMFSHVKRLSYVPVCLILKCLMDYTDEEIYNRLV----QGYESDQY 276
Query: 219 AVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQ---PVIDGLQSESYYAVAETVI 275
V V+ +L EVQ+ ++ T QC IG F+ P + Q + V + ++
Sbjct: 277 YVSC------VQSMLREVQNENVYTHAQCKSFIGNLFRARFPEVPEWQPDE--DVTDFIL 328
Query: 276 RDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEK 335
R+ + +HL+ N DKF L++FM+QKLF +N DS QE+LLPGHL YL E+
Sbjct: 329 RERVMIHLDTNEDKFQLIVFMIQKLFQCAQGKYKVENVDSAMMQEVLLPGHLYQKYLGER 388
Query: 336 LEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQT 395
+E W+ + ++ +Q ++ + A + + M + + +G SIE+ L TG +A++T
Sbjct: 389 VESWVLQVRRCLQKKLTSPD---GLLTSAVMTQCMRQ--AGGVGRSIESFLATGNIASRT 443
Query: 396 GLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTP 455
GL L Q +G + AE +N +R++S FRA+HRG+ F +RTT R+LLP++WGF+CPVHTP
Sbjct: 444 GLGLMQNSGLVIMAENINRMRYMSHFRAIHRGSYFTTMRTTEARQLLPDAWGFICPVHTP 503
Query: 456 DGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPA 515
DG PCGLLNH+T TC ++ +R K+ +I + LI +GM+P L G
Sbjct: 504 DGTPCGLLNHLTLTCEIS--------MRPDPKLVKAIPKQLIDMGMMP-LSNRSYLGD-K 553
Query: 516 VLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLF 575
+ V LDG+ +G I SE K+V LR K+ +P +E+G++P G +PGLYL
Sbjct: 554 LYVVFLDGKHLGHIYQSEATKIVDDLRYGKIFGT--LPQMMEIGFIPFKKNGQFPGLYLA 611
Query: 576 TSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFP--ATHEEIH 633
T P + +RPV N+ +E IG EQ++MEI + +P TH E+
Sbjct: 612 TGPARMMRPVWNLKW-----NRVEYIGTLEQLYMEIAIDS------KEMYPDFTTHLELA 660
Query: 634 PTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIV 693
T +S +ANL P D+NQSPRNMYQCQM KQTMG +A KLY LQTP TP+
Sbjct: 661 KTHFMSNLANLIPMPDYNQSPRNMYQCQMGKQTMGTPCLNWPKQAANKLYRLQTPATPLF 720
Query: 694 RTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLS 753
R Y +D++ GTNAIVAV++YTGYDMEDAMI+NK++ +RG +G IY+T+ + L
Sbjct: 721 RPVHYDNIQLDDFAMGTNAIVAVISYTGYDMEDAMIINKAAYERGFAYGSIYKTKFLTL- 779
Query: 754 DDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSR 813
D+ F R+ L +D+DGLP+ G + G P +D +++
Sbjct: 780 ------DKKSSYFARHPHMPELVKHLDTDGLPHPGSKLSYGSPLYCYFDGEVATYKVVKM 833
Query: 814 KGSESVFVDYV----AVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWP 869
E V+ + + D+ K + I R R IGDKF+SR GQKG+CSQ +P
Sbjct: 834 DEKEDCIVESIRQLGSFDLSPKKTVA----ITLRVPRPATIGDKFASRAGQKGICSQKYP 889
Query: 870 DIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
D+PF+ +G+ PD++ NPH FPSRMTIAM++E++A K
Sbjct: 890 AEDLPFTE-SGLIPDIVFNPHGFPSRMTIAMMIETMAGK 927
>gi|407044307|gb|EKE42503.1| DNA-directed RNA polymerase, beta subunit domain containing protein
[Entamoeba nuttalli P19]
Length = 1106
Score = 588 bits (1515), Expect = e-165, Method: Compositional matrix adjust.
Identities = 340/945 (35%), Positives = 513/945 (54%), Gaps = 92/945 (9%)
Query: 12 LRELVRHHIESFDYMLDEGLSEMFDH---------------------------------- 37
L+EL R H ESF+Y L++G ++ +
Sbjct: 11 LKELTRAHTESFNYFLEKGKEDILKYMKKYKIIKKDSTELMELSCTGISIEKPTYNGLPL 70
Query: 38 ----CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHL--QGADSQ 91
CR A ++Y+G++ + + D+ + + G+ P+M+ + +C + + +
Sbjct: 71 FPYMCRSAALTYSGRIKLTITIKENDSNKTI---EVDGGEIPIMVGSSKCWIGSEYTTPE 127
Query: 92 KLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRC 151
+ ++++E+ E+GGYFI+NG+ER R ++ K N+P+++ R S+ ++ +T ++IRC
Sbjct: 128 ERINIREDPHEIGGYFIINGIERYLRMIVYAKPNHPLAVTRPSWTNKGAHFTKYGIIIRC 187
Query: 152 VRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDE 211
+R D +++T L++L NG V L F + +E+ +PV ++L+ +D EIF +T E
Sbjct: 188 MRDDITTLTNTLHFLDNGKVSLRFIFKKQEFFIPVVLLLRVYGGMSDREIFQLITMNNYE 247
Query: 212 KYKKEKGAV-------GSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQS 264
A GSPL L + Q L +IG F+ ++DG +
Sbjct: 248 NSNLVNAAEMLVRRENGSPLNG--------------LNSPEQVLTYIGSKFRLIMDGTEG 293
Query: 265 ESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLP 324
+ + + V+ ++ VHL+ +K +LLIFMLQKLF+LV + D+ +Q +LLP
Sbjct: 294 VNDTELGKRVLDEFCLVHLSSYAEKSDLLIFMLQKLFALVHGEIDEEGVDTPMSQGVLLP 353
Query: 325 GHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIET 384
GHL +KE++++ L K K I ++++ K +++ + + +K GT I++
Sbjct: 354 GHLYQTVIKEEIQNVLSKAKLFILKDLKDVKKGSKVTEKIYLQRALS-SAAKSFGTRIKS 412
Query: 385 MLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPE 444
+ TG T T DLQQ G+++ AERLN RF S F +VHRGA + ++TTS+RKL+PE
Sbjct: 413 FISTGNFETNTTTDLQQTNGFSITAERLNHSRFTSHFVSVHRGAFYTTMKTTSIRKLVPE 472
Query: 445 SWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPS 504
+WGF+CPVHTPDG PCGLLNH +CR+ N R I+ + +GM+ +
Sbjct: 473 AWGFMCPVHTPDGAPCGLLNHFAVSCRI--------NARKHPLPDQQIIDLCTELGMVST 524
Query: 505 -LPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPL 563
KL P + VLL+G+V+G + EI V LR + IP+ LE+GY
Sbjct: 525 QFMKL----PSIYIPVLLNGKVIGKVSPHEINSFVQQLRYERAVYNPKIPNTLEIGYCDG 580
Query: 564 SLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRN 623
L Y LYL P + +RPV + + NI IGP+EQVF++I+C D +G
Sbjct: 581 YLQDGYHALYLNDLPGQMIRPVIH-----RATGNIVNIGPYEQVFLDIKCGDSIEGMNN- 634
Query: 624 AFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLY 683
A +EEI LS++A LTP+ NQSPRNMYQCQMAKQTMG + K+R+D KL
Sbjct: 635 ---AEYEEISALNSLSLLATLTPFCHMNQSPRNMYQCQMAKQTMGIPALSNKYRSDTKLL 691
Query: 684 HLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQ 743
L PQ I + +G +EYPTG NA+VAV++YTGYDMEDA+I+ KS+++RG HG
Sbjct: 692 WLHYPQRSICQCALMEPFGFNEYPTGANAVVAVISYTGYDMEDALIIKKSAIERGFGHGS 751
Query: 744 IYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDK 803
Y+ +D +G K + + +D DGLP G++ Y I DK
Sbjct: 752 QYKAYKVDFEKEGEK---NEMFSGTTSSGEVFDEHLDDDGLPRPGEVFENSPIYSHI-DK 807
Query: 804 TTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGV 863
T + G V N + QKA +R R+ R P+IGDKFSSRHGQKG
Sbjct: 808 ITGKIKGKVLMGERGYIESVRIVGGDNIDSGLQKAVVRVRYNRTPVIGDKFSSRHGQKGT 867
Query: 864 CSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
S + + DMPF+ +GM PD+IINPHAFPSRMTIAML+ES+A+K
Sbjct: 868 LSVHYQEKDMPFTE-SGMTPDIIINPHAFPSRMTIAMLVESMASK 911
>gi|294876076|ref|XP_002767539.1| DNA-directed RNA polymerase II 135 kDa polypeptide, putative
[Perkinsus marinus ATCC 50983]
gi|239869199|gb|EER00257.1| DNA-directed RNA polymerase II 135 kDa polypeptide, putative
[Perkinsus marinus ATCC 50983]
Length = 1255
Score = 587 bits (1514), Expect = e-165, Method: Compositional matrix adjust.
Identities = 349/934 (37%), Positives = 507/934 (54%), Gaps = 87/934 (9%)
Query: 37 HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
HCRQA I+Y+G+L A V PV R G P+M+++ CHL G K+V
Sbjct: 118 HCRQAHITYSGELSATVNVSLGTGEPPVQMARVPLGLVPIMVRSEACHLHGMPPSKMVQC 177
Query: 97 KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQ 156
E+ E GGYFI+NG E+V R +I+PK N+P+++ R SF +R Y+ AV +R +R D
Sbjct: 178 GEDPDERGGYFIVNGNEKVIRLLIMPKSNFPVALYRPSFSNRGPLYSAYAVQMRSMRPDL 237
Query: 157 SSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALV--DTNDLEIFNHLTCCYDEKYK 214
++ T+ ++Y +G+ + F EYL+P+ ++LK L + N L C
Sbjct: 238 TTQTVTMHYRKDGTCWVRFTYLKNEYLIPLMLLLKCLAPDELNSERSLFELLC------- 290
Query: 215 KEKGAVGSPLVSERVKIILAEVQD----LSLTTRLQCLQHIGEHFQPV----------ID 260
G + V+ERV +L +++ + +R L ++G F+ V +D
Sbjct: 291 --DGLMADTFVAERVTCMLEQMRTHPELKHVHSREDALYYLGSKFEVVFREKRGAGVSLD 348
Query: 261 GLQ----------SESYYAVAETVIRDYIFVHLNDNND----KFNLLIFMLQKLFSLVDH 306
G+ E +VA ++ + VH + K + L+ + +KL +LV
Sbjct: 349 GIALEVDDAAMSPVEKSVSVARRLLDSLMLVHCPKGAEGGKAKVDCLVLIFRKLMALVRG 408
Query: 307 TSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRK-----GKKLIQDEIENNGKKFDFF 361
DN D++ QE+LLPG L LKE L+ L + KK Q ++ G+
Sbjct: 409 DIAPDNADAMDVQELLLPGQLFGALLKEVLQSSLLRLEGALAKKSRQAQV-GKGRAPTVL 467
Query: 362 NLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFF 421
+ I+ + +E+ L TG + +++GLDLQQ G+TV A++LN R++S F
Sbjct: 468 SAELIRNTFMG--VCDVTKRMESFLATGNITSRSGLDLQQTTGFTVVADKLNAYRYLSHF 525
Query: 422 RAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCR-VASYYDSRG 480
RAVHRG+ F ++TTSVRKLLPE+WGFLCPVHTPDG PCGLLNH+ + C+ V G
Sbjct: 526 RAVHRGSFFQEMKTTSVRKLLPETWGFLCPVHTPDGTPCGLLNHLAAPCQPVVRIASPEG 585
Query: 481 NIRDFSKMRTSILRVLIGVGMI-PSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVA 539
I + S+ GV ++ S G V LDGRV+G + S +E V
Sbjct: 586 VIPGLEEELASL-----GVQLVRSSKTSTANYGAGENAYVTLDGRVLGKVARSRLEAVAE 640
Query: 540 HLRRLKVSA-ASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNI 598
LRRLK+ +P DLE+ V ++ GL+LFT P + VRPVR+++ + N
Sbjct: 641 ELRRLKIDKDCPGVPADLEI--VACQTPASFEGLWLFTGPCRMVRPVRDLA-----TGNE 693
Query: 599 ELIGPFEQVFMEIRCP--DGGDGGRRNAFPA------THEEIHPTGMLSVVANLTPYSDH 650
EL+GP EQVF++I D + ++ P TH E+ P MLSV+A LTP+S+H
Sbjct: 694 ELVGPMEQVFLKIAATREDLEASTKTSSVPENIPMKYTHIELSPISMLSVIAGLTPFSNH 753
Query: 651 NQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGT 710
NQSPRNMYQCQM KQTM +R D K+Y + PQ P+VRT ++ D P GT
Sbjct: 754 NQSPRNMYQCQMLKQTMAIPYLNHPYRTDNKVYKITYPQFPMVRTTVLSEANFDVKPAGT 813
Query: 711 NAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNK 770
NAIVAV+A++G+DMEDA+I++K S DRG HG +Y+T+ I+ G R + N
Sbjct: 814 NAIVAVIAHSGFDMEDALIISKGSYDRGFKHGSVYKTKVINCPPKGTVGSRLAQFRADNH 873
Query: 771 DAKSLHSV--IDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAV-- 826
K V +D DG+PY+GQ +H G+P C + +K T + K E +V+ V +
Sbjct: 874 SVKGEKVVKDLDYDGIPYIGQQVHEGDPICRVLNKGTGEAKLEKYKEGEVAWVEQVNMIG 933
Query: 827 ------------DMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMP 874
+ K+ ++ +I+ R RNP++GDKFSSRHGQKGV + LWP DMP
Sbjct: 934 GGGWWGGGAGARNPGGIKDGSERMSIKLRLPRNPVVGDKFSSRHGQKGVMAILWPQADMP 993
Query: 875 FSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
FS +G+ PD++ NPH PSRMTI ML+E +A K
Sbjct: 994 FS-TSGISPDIMFNPHGMPSRMTIGMLIEFMAGK 1026
>gi|67473159|ref|XP_652347.1| DNA-directed RNA polymerase subunit [Entamoeba histolytica
HM-1:IMSS]
gi|56469186|gb|EAL46961.1| DNA-directed RNA polymerase subunit, putative [Entamoeba
histolytica HM-1:IMSS]
gi|449709519|gb|EMD48770.1| DNA-directed RNA polymerase I subunit RPA2, putative [Entamoeba
histolytica KU27]
Length = 1106
Score = 587 bits (1513), Expect = e-164, Method: Compositional matrix adjust.
Identities = 339/945 (35%), Positives = 513/945 (54%), Gaps = 92/945 (9%)
Query: 12 LRELVRHHIESFDYMLDEGLSEMFDH---------------------------------- 37
L+EL R H ESF+Y L++G ++ +
Sbjct: 11 LKELTRAHTESFNYFLEKGKEDILKYMKKYKIIKKDSTELMELSCTGISIEKPTYNGLPL 70
Query: 38 ----CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHL--QGADSQ 91
CR A ++Y+G++ + + D+ + + G+ P+M+ + +C + + +
Sbjct: 71 FPYMCRSAALTYSGRIKLTITIKENDSNKTI---EVDGGEIPIMVGSSKCWIGSEYTTPE 127
Query: 92 KLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRC 151
+ ++++E+ E+GGYFI+NG+ER R ++ K N+P+++ R S+ ++ +T ++IRC
Sbjct: 128 ERINIREDPHEIGGYFIINGIERYLRMIVYAKPNHPLAVTRPSWTNKGAHFTKYGIIIRC 187
Query: 152 VRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDE 211
+R D +++T L++L NG V L F + +E+ +PV ++L+ +D EIF +T E
Sbjct: 188 MRDDITTLTNTLHFLDNGKVSLRFIFKKQEFFIPVVLLLRVYGGMSDREIFQLITMNNYE 247
Query: 212 KYKKEKGAV-------GSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQS 264
A GSPL L + Q L +IG F+ ++DG +
Sbjct: 248 NSNLVNAAEMLVRRENGSPLNG--------------LNSPEQVLTYIGSKFRLIMDGTEG 293
Query: 265 ESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLP 324
+ + + V+ ++ VHL+ +K +LLIFMLQKLF+LV + D+ +Q +LLP
Sbjct: 294 VNDTELGKRVLDEFCLVHLSSYAEKSDLLIFMLQKLFALVHGEIDEEGVDTPMSQGVLLP 353
Query: 325 GHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIET 384
GHL +KE++++ L K + I ++++ K +++ + + +K GT I++
Sbjct: 354 GHLYQTVIKEEIQNVLSKARLFILKDLKDVKKGSKVTEKIYLQRALS-SAAKSFGTRIKS 412
Query: 385 MLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPE 444
+ TG T T DLQQ G+++ AERLN RF S F +VHRGA + ++TTS+RKL+PE
Sbjct: 413 FISTGNFETNTTTDLQQTNGFSITAERLNHSRFTSHFVSVHRGAFYTTMKTTSIRKLVPE 472
Query: 445 SWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPS 504
+WGF+CPVHTPDG PCGLLNH +CR+ N R I+ + +GM+ +
Sbjct: 473 AWGFMCPVHTPDGAPCGLLNHFAVSCRI--------NARKHPLPDQQIIDLCTELGMVST 524
Query: 505 -LPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPL 563
KL P + VLL+G+V+G + EI V LR + IP+ LE+GY
Sbjct: 525 QFMKL----PSIYIPVLLNGKVIGKVSPHEINSFVQQLRYERAVYNPKIPNTLEIGYCDG 580
Query: 564 SLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRN 623
L Y LYL P + +RPV + + NI IGP+EQVF++I+C D +G
Sbjct: 581 YLQDGYHALYLNDLPGQMIRPVIH-----RATGNIVNIGPYEQVFLDIKCGDSIEGMNN- 634
Query: 624 AFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLY 683
A +EEI LS++A LTP+ NQSPRNMYQCQMAKQTMG + K+R+D KL
Sbjct: 635 ---AEYEEISALNSLSLLATLTPFCHMNQSPRNMYQCQMAKQTMGIPALSNKYRSDTKLL 691
Query: 684 HLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQ 743
L PQ I + +G +EYPTG NA+VAV++YTGYDMEDA+I+ KS+++RG HG
Sbjct: 692 WLHYPQRSICQCALMEPFGFNEYPTGANAVVAVISYTGYDMEDALIIKKSAIERGFGHGS 751
Query: 744 IYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDK 803
Y+ +D +G K + + +D DGLP G++ Y I DK
Sbjct: 752 QYKAYKVDFEKEGEK---NEMFSGTTSSGEVFDEHLDDDGLPRPGEVFENSPIYSHI-DK 807
Query: 804 TTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGV 863
T + G V N + QKA +R R+ R P+IGDKFSSRHGQKG
Sbjct: 808 ITGKIKGKVLMGERGYIESVRIVGGDNIDSGLQKAVVRVRYNRTPVIGDKFSSRHGQKGT 867
Query: 864 CSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
S + + DMPF+ +GM PD+IINPHAFPSRMTIAML+ES+A+K
Sbjct: 868 LSVHYQEKDMPFTE-SGMTPDIIINPHAFPSRMTIAMLVESMASK 911
>gi|195575535|ref|XP_002077633.1| GD23021 [Drosophila simulans]
gi|194189642|gb|EDX03218.1| GD23021 [Drosophila simulans]
Length = 1129
Score = 587 bits (1512), Expect = e-164, Method: Compositional matrix adjust.
Identities = 325/879 (36%), Positives = 510/879 (58%), Gaps = 63/879 (7%)
Query: 39 RQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKE 98
RQ +SY+G M V + G + G+ P+ML+++ C+L A +++V E
Sbjct: 103 RQLHVSYSG--MCSVRLGWSVNGVEKTPINMDLGEVPIMLRSKACNLGQATPEEMVKHGE 160
Query: 99 EAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSS 158
+E GG F++ G E++ R +I+ ++N+P+ + RSS++DR + ++D ++++ VR+D+SS
Sbjct: 161 HDSEWGGIFVIRGNEKIVRMLIMTRRNHPICVKRSSWKDRGQNFSDLGMLVQTVREDESS 220
Query: 159 VTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKG 218
++ ++YL NG+ + F + +PV ++LK L+D D EI+N L + Y+ ++
Sbjct: 221 LSNVVHYLNNGTAKFMFSHVKRLSYVPVCLILKCLMDYTDEEIYNRLV----QGYESDQY 276
Query: 219 AVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQ---PVIDGLQSESYYAVAETVI 275
V V+ +L EVQ+ ++ T QC IG F+ P + Q + V + ++
Sbjct: 277 YVSC------VQSMLREVQNENVYTHAQCKSFIGNLFRARFPEVPEWQPDE--DVTDFIL 328
Query: 276 RDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEK 335
R+ + +HL++ DKF L++FM+QKLF +N DS QE+LLPGHL YL E+
Sbjct: 329 RERVMIHLDNYEDKFQLIVFMIQKLFQCAQGKYKVENVDSAMMQEVLLPGHLYQKYLSER 388
Query: 336 LEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQT 395
+E W+ + ++ +Q ++ + A + + M + + +G +IE+ L TG +A++T
Sbjct: 389 VESWVSQVRRCLQKKLTSPDA---LVTSAVMTQCMRQ--AGGVGRAIESFLATGNIASRT 443
Query: 396 GLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTP 455
GL L Q +G + AE +N +R++S FRA+HRG+ F +RTT R+LLP++WGF+CPVHTP
Sbjct: 444 GLGLMQNSGLVIMAENINRMRYMSHFRAIHRGSYFTTMRTTEARQLLPDAWGFICPVHTP 503
Query: 456 DGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPA 515
DG PCGLLNH+T TC ++ +R K+ +I + LI +GM+P + +
Sbjct: 504 DGTPCGLLNHLTLTCEIS--------MRPDPKLVKAIPKHLIDMGMMPLSSR--RYLGEK 553
Query: 516 VLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLF 575
+ V LDG+ +G I SE +K+V LR K+ +P +E+G++P G +PGLYL
Sbjct: 554 LYVVFLDGKHLGHIHQSEADKIVDELRYGKIFGT--LPQMMEIGFIPFKKNGQFPGLYLA 611
Query: 576 TSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFP--ATHEEIH 633
T P + +RPV N+ + +E IG EQ++MEI + +P TH E+
Sbjct: 612 TGPARMMRPVWNLKW-----KRVEYIGTLEQLYMEIAI------DAKEMYPDFTTHLELA 660
Query: 634 PTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIV 693
T +S +ANL P D+NQSPRNMYQCQM KQTMG +A KLY LQTP TP+
Sbjct: 661 KTHFMSNLANLIPMPDYNQSPRNMYQCQMGKQTMGTPCLNWPKQAANKLYRLQTPGTPLF 720
Query: 694 RTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLS 753
R Y +D++ GTNAIVAV++YTGYDMEDAMI+NK++ +RG +G IY+T+ + L
Sbjct: 721 RPVHYDNIQLDDFAMGTNAIVAVISYTGYDMEDAMIINKAAYERGFAYGSIYKTKFLTL- 779
Query: 754 DDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSR 813
D+ F R+ L +D+DGLP+ G + G P +D +++
Sbjct: 780 ------DKKSSYFARHPHMPELIKHLDTDGLPHPGSKLSYGSPLYCYFDGEVATYKVVKM 833
Query: 814 KGSESVFVDYV----AVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWP 869
E V+ + + D+ K + I R R IGDKF+SR GQKG+CSQ +P
Sbjct: 834 DEKEDCIVESIRQLGSFDLSPKKTVA----ITLRVPRPATIGDKFASRAGQKGICSQKYP 889
Query: 870 DIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
D+PF+ +G+ PD++ NPH FPSRMTIAM++E++A K
Sbjct: 890 AEDLPFTE-SGLIPDIVFNPHGFPSRMTIAMMIETMAGK 927
>gi|198473780|ref|XP_001356442.2| GA17896 [Drosophila pseudoobscura pseudoobscura]
gi|198138104|gb|EAL33506.2| GA17896 [Drosophila pseudoobscura pseudoobscura]
Length = 1126
Score = 586 bits (1510), Expect = e-164, Method: Compositional matrix adjust.
Identities = 334/878 (38%), Positives = 503/878 (57%), Gaps = 61/878 (6%)
Query: 39 RQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKE 98
RQ SY+G M V + G + G+ PVML+++ C+L Q++V E
Sbjct: 100 RQLHASYSG--MCSVRLAWSVNGLQKTPINMDLGEVPVMLRSKACNLGKGTPQEMVKHGE 157
Query: 99 EAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSS 158
E GG F++ G E++ R ++L ++N+P+ + RS+++DR + ++D ++++ VR D+ S
Sbjct: 158 HDTEWGGIFVIRGNEKIVRMLVLVRRNHPICVKRSTWKDRGQNFSDLGIMVQTVRDDECS 217
Query: 159 VTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKG 218
+ L+YL NG+ R F + +PV ++LK L+D D EI+N L + Y+K++
Sbjct: 218 FSNVLHYLNNGTARFMFSHIKRLSYVPVCLILKCLMDYTDEEIYNRLV----QGYEKDQY 273
Query: 219 AVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQP---VIDGLQSESYYAVAETVI 275
V S V+ +L +V + + T QC IG F+ V+ Q + V + ++
Sbjct: 274 YVSS------VQTMLRDVHNEGVYTHAQCRSFIGTLFRSRFNVVPEWQPDE--DVTDFIL 325
Query: 276 RDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEK 335
R+ I VHL+ +KF L++FM+QKLF +N DS QE+LLPGHL YL E+
Sbjct: 326 RERILVHLDTYEEKFQLIVFMVQKLFQCAQGKHKVENVDSAMMQEVLLPGHLYQKYLGER 385
Query: 336 LEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQT 395
+E+W+ ++++Q ++ + + + M + + +G SIE+ L TG +A+ T
Sbjct: 386 IENWVAMVRRVLQKKLSTPD---SLLTSSILTQSMRQ--AGGVGKSIESFLATGNIASNT 440
Query: 396 GLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTP 455
GL L Q +G + AE +N +R++S FRA+HRG+ F +RTT R+LLP++WGF+CPVHTP
Sbjct: 441 GLGLMQNSGLVIMAENINRMRYMSHFRAIHRGSYFTTMRTTEARQLLPDAWGFICPVHTP 500
Query: 456 DGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPA 515
DG PCGLLNH+T TC ++ D K+ +I LI +GM LP + P +
Sbjct: 501 DGTPCGLLNHLTLTCEISKRPDP--------KLVQAIPPKLIEMGM---LPLSCQRNPDS 549
Query: 516 VL-SVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYL 574
+ VLLDG+ +G I S+ K+V LR K++ A +P +E+G++P G +PGLYL
Sbjct: 550 KMYVVLLDGKHLGHIFQSDACKIVEDLRYEKITGA--VPQMMEIGFIPFKKNGQFPGLYL 607
Query: 575 FTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFP--ATHEEI 632
T P + +RPV NI + +E IG EQ++MEI + +P TH E+
Sbjct: 608 STGPARMMRPVWNIKW-----KQVEYIGTLEQLYMEIAIDP------KEMYPDFTTHLEL 656
Query: 633 HPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPI 692
T +S +ANL P D+NQSPRNMYQCQM KQTMG +A KLY LQTP TP+
Sbjct: 657 AKTHFMSNLANLIPMPDYNQSPRNMYQCQMGKQTMGTPCLNWPKQAANKLYRLQTPGTPL 716
Query: 693 VRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDL 752
R Y +D++ GTNAIVAV++YTGYDMEDAMI+NKS+ +RG +G IY+++ + L
Sbjct: 717 FRPVHYDNIQLDDFAMGTNAIVAVISYTGYDMEDAMIINKSAYERGFAYGSIYKSKFVQL 776
Query: 753 SDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNS 812
+ F R+ L +D+DGLP+ G + G P +D +++
Sbjct: 777 P-------KKSSYFARHPHMPELAKYLDTDGLPHPGAKLTFGCPLYCYFDGEVATYKVEK 829
Query: 813 RKGSESVFVDYVAVDMKNSKNLPQKAN--IRFRHTRNPIIGDKFSSRHGQKGVCSQLWPD 870
E FVD ++ S +L K I R R IGDKF+SR GQKG+CSQ +P
Sbjct: 830 MDEKEECFVD--SIRQLGSFDLTPKKTVCITLRVPRPATIGDKFASRAGQKGICSQKYPA 887
Query: 871 IDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
D+PF+ +GM PD++ NPH FPSRMTIAM++E++A K
Sbjct: 888 EDLPFTE-SGMIPDIVFNPHGFPSRMTIAMMIETMAGK 924
>gi|426223603|ref|XP_004005964.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 4
[Ovis aries]
Length = 924
Score = 585 bits (1509), Expect = e-164, Method: Compositional matrix adjust.
Identities = 329/767 (42%), Positives = 447/767 (58%), Gaps = 49/767 (6%)
Query: 149 IRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCC 208
+ CVR++ S+V + L+YL NG+V L F + + + LP+G LKALV +D +IF L
Sbjct: 1 MHCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELI-- 58
Query: 209 YDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYY 268
KE + VS+ ++I++ E +T+ Q L ++GE F+ ++
Sbjct: 59 ----KGKEDDSFFRNSVSQMLRIVMEE----GCSTQKQVLNYLGERFRVKLNLPDWYPNE 110
Query: 269 AVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLI 328
AE + I +HL N +KF +L M +KLF+L + +NPDSL NQE+L PG L
Sbjct: 111 QAAEFLFNQCICIHLKSNTEKFYVLCLMTRKLFALAKGECMEENPDSLMNQEVLTPGQLF 170
Query: 329 TIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKT 388
++LKEKLE WL K I + + + NL I + + E +L T
Sbjct: 171 LMFLKEKLEAWLVSIKIAIDKKSQKTNVSLNSENLMKIFSL-----GIDLTKPFEYLLAT 225
Query: 389 GRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGF 448
G L ++TGL Q +G V A++LNF+R++S FR VHRGA FA +RTT+VR+LLPESWGF
Sbjct: 226 GNLRSKTGLGFLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVRRLLPESWGF 285
Query: 449 LCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKL 508
LCPVHTPDGEPCGL+NH+T+ C V + S SI +L +G+ P
Sbjct: 286 LCPVHTPDGEPCGLMNHLTAICEVVTQ----------SVYTASIPALLCSLGVTPV---- 331
Query: 509 VKSGPP-----AVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPL 563
G P VLLDG ++G + LR KV IP +EV +P+
Sbjct: 332 --DGTPHRPYSECYPVLLDGVMIGWADKEIAPGIADSLRHFKVLREKRIPPWMEVVLIPM 389
Query: 564 SLGGA-YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRR 622
+ + YPGLYLFT+P + VRPV+N+ L EE LIG EQ+FM + +
Sbjct: 390 TGKPSLYPGLYLFTTPCRLVRPVQNLELGKEE-----LIGTMEQIFMNVAIFED----EV 440
Query: 623 NAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKL 682
A TH+E+ P MLSV+AN P+SDHNQSPRNMYQCQM KQTMGF + + R+D KL
Sbjct: 441 LAGVTTHQELFPHSMLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTFQDRSDNKL 500
Query: 683 YHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHG 742
Y LQTPQ+P+VR Y Y +D YP GTNAIVAV++YTGYDMEDAMI+NK+S +RG HG
Sbjct: 501 YRLQTPQSPLVRPYMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHG 560
Query: 743 QIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYD 802
+Y++E IDLS+ + D + D + + +D DGLP++G + G+PY S +
Sbjct: 561 SVYKSEFIDLSEKIKQGDDSLVFGVKAGDPRVMQK-LDDDGLPFIGAQLKYGDPYYSYLN 619
Query: 803 KTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHTRNPIIGDKFSSRHGQK 861
T K E+ VD + V ++ N K I R RNP IGDKF+SRHGQK
Sbjct: 620 LNTGEGFVMYYKSKENCIVDNIKVCSNDTGNGKFKCVCITMRVPRNPTIGDKFASRHGQK 679
Query: 862 GVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
G+ S+LWP DMPF+ +GM PD++ NPH FPSRMTI ML+ES+A K
Sbjct: 680 GILSRLWPVEDMPFTE-SGMVPDILFNPHGFPSRMTIGMLIESMAGK 725
>gi|195388314|ref|XP_002052825.1| GJ17773 [Drosophila virilis]
gi|194149282|gb|EDW64980.1| GJ17773 [Drosophila virilis]
Length = 1122
Score = 585 bits (1509), Expect = e-164, Method: Compositional matrix adjust.
Identities = 335/882 (37%), Positives = 510/882 (57%), Gaps = 69/882 (7%)
Query: 39 RQAKISYTGKLMADVEFQYLD-AGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
RQ SY+G + + D +P+ + G+ PVML++R C+L A Q +V
Sbjct: 96 RQLHASYSGVCSVRLGWSVNDLEKTPI---NMDLGEVPVMLRSRACNLGKATPQDMVKHG 152
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
E +E GG F++ G E++ R +I+ ++N+P+ + RSS++DR +++ V+++ VR D+
Sbjct: 153 EHDSEWGGIFVIRGNEKIVRMLIMTRRNHPICVKRSSWKDRGHNFSELGVMVQTVRDDEL 212
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
S+T L+YL NG+ R F + +PV ++LK L+D D +I+N C + Y+ ++
Sbjct: 213 SLTNVLHYLNNGTARFMFSHVKRLSYVPVCLILKCLMDYTDEQIYN----CLVQGYESDQ 268
Query: 218 GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIG----EHFQPVIDGLQSESYYAVAET 273
+ V+ +L +VQ+ + T QC IG F V D L E AV E
Sbjct: 269 YYLTC------VQSMLRDVQNEGVYTSAQCRSFIGTLFRSRFPEVPDWLPDE---AVTEY 319
Query: 274 VIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLK 333
++R+ I VHL N +KF L++FM+QKLF +N DS QE+LLPGHL YL
Sbjct: 320 IMRERIMVHLATNEEKFQLIVFMVQKLFQCAQGKYKVENVDSAMMQEVLLPGHLYQKYLG 379
Query: 334 EKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEK--NPSKQIGTSIETMLKTGRL 391
E++E WL + ++ + KK + + +M + + +G ++E+ L TG +
Sbjct: 380 ERIEMWLLQLRRCLL-------KKLNAPDSLASSSIMTQCMRQAGGVGRAMESFLATGNV 432
Query: 392 ATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCP 451
A++TGL L Q +G + AE +N +R++S FRA+HRG+ F +RTT R+LLP++WGF+CP
Sbjct: 433 ASRTGLGLMQSSGLVIMAENINRMRYMSHFRAIHRGSYFTTMRTTEARQLLPDAWGFICP 492
Query: 452 VHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKS 511
VHTPDG PCGLLNH+T TC ++ D K+ +I +L+ +GM+P L +
Sbjct: 493 VHTPDGTPCGLLNHLTLTCEISKRPDP--------KLVQAIPAMLLEMGMMP----LSQQ 540
Query: 512 GPP--AVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAY 569
G P + V LDG+ +G I +E K+V LR K++ +P+ +E+G++P G +
Sbjct: 541 GQPDAKLYVVFLDGKHLGHIFQTEATKMVEDLRYAKITGQ--VPEMMEIGFIPYKKNGQF 598
Query: 570 PGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFP--A 627
PGL+L T P + +RPV N+ Q +E IG EQ++MEI + + +P
Sbjct: 599 PGLFLSTGPTRMMRPVWNLKW-----QRVEYIGTLEQLYMEIAIDE------KEMYPDFT 647
Query: 628 THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
TH E+ T +S +ANL P D+NQSPRNMYQCQM KQTMG +A KLY LQT
Sbjct: 648 THLELSKTHFMSNLANLIPMPDYNQSPRNMYQCQMGKQTMGTPCLNWPKQAANKLYRLQT 707
Query: 688 PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
P TP+ R Y +D++ GTNAIVAV++YTGYDMEDAMI+NKS+ +RG +G IY++
Sbjct: 708 PATPLFRPVHYDNIQLDDFAMGTNAIVAVISYTGYDMEDAMIINKSAYERGFAYGSIYKS 767
Query: 748 ETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNS 807
+ + L+ + Q F R+ L +D+DGLP+ G + G P +D ++
Sbjct: 768 KFVQLA-------KKQSYFARHPHMPELIKHLDTDGLPHPGTKLSYGSPLYCYFDGEVST 820
Query: 808 WRTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHTRNPIIGDKFSSRHGQKGVCSQ 866
++ E VD V + + + +P+K I R R IGDKF+SR GQKG+CSQ
Sbjct: 821 FKVVKMDEKEDCVVDSVR-QLGSFELMPRKTVCITLRVARPATIGDKFASRAGQKGICSQ 879
Query: 867 LWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
+P D+PF+ +G+ PD++ NPH FPSRMTIAM++E++A K
Sbjct: 880 KYPAEDLPFTE-SGLIPDIVFNPHGFPSRMTIAMMIETMAGK 920
>gi|338713977|ref|XP_003362990.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 [Equus
caballus]
Length = 924
Score = 585 bits (1508), Expect = e-164, Method: Compositional matrix adjust.
Identities = 328/767 (42%), Positives = 452/767 (58%), Gaps = 49/767 (6%)
Query: 149 IRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCC 208
+ CVR++ S+V + L+YL NG+V L F + + + LP+G LKALV +D +IF L
Sbjct: 1 MHCVREEHSAVNMNLHYLENGTVMLNFVYRKELFFLPLGFALKALVSFSDYQIFQELI-- 58
Query: 209 YDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYY 268
KE + VS+ ++I+ E +T+ Q L ++GE F+ ++
Sbjct: 59 ----KGKEDDSFFRNSVSQMLRIVTEE----GCSTQKQVLNYLGERFRVKLNLPDWYPDA 110
Query: 269 AVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLI 328
AE + I +HL N +KF +L M +KLF+L + +NPDSL NQE+L PG L
Sbjct: 111 QAAEFLFNQCICIHLKSNTEKFYVLCLMTRKLFALAKGECMEENPDSLVNQEVLTPGQLF 170
Query: 329 TIYLKEKLEDWLRKGKKLIQDEIENNGKKFDF-FNLANIKKVMEKNPSKQIGTSIETMLK 387
++LKEK+E WL I+ ++ +K D N N+ K+ N + E +L
Sbjct: 171 LMFLKEKMEAWLVS----IKIALDKKAQKTDVSINTDNLMKIF--NLGTDLTKPFEYLLA 224
Query: 388 TGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWG 447
TG L ++TGL Q +G V A++LNF+R++S FR VHRGA FA +RTT+VR+LLPESWG
Sbjct: 225 TGNLRSKTGLGFLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVRRLLPESWG 284
Query: 448 FLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPK 507
FLCPVHTPDGEPCGL+NH+T+ C V + + S+ +L +G+ P
Sbjct: 285 FLCPVHTPDGEPCGLMNHLTAICEVVTQF----------AYTASVPALLCSLGVTP---- 330
Query: 508 LVKSGPPAVLS----VLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPL 563
V P S VLLDG +VG + + LR KV IP +EV +P+
Sbjct: 331 -VDGAPHRPYSECYPVLLDGVMVGWVDKELAPSIADSLRHFKVLREKRIPPWMEVALIPM 389
Query: 564 SLGGA-YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRR 622
+ + YPGL+LFT+P + VRPV+N+ L EE LIG EQ+FM I +
Sbjct: 390 TGKPSLYPGLFLFTTPCRLVRPVQNLELGREE-----LIGTMEQIFMNIAIFED----EV 440
Query: 623 NAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKL 682
A TH+E+ P +LSV+AN P+SDHNQSPRNMYQCQM KQTMGF + + R+D KL
Sbjct: 441 FAGVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYRDRSDNKL 500
Query: 683 YHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHG 742
Y LQTPQ+P+VR Y Y +D YP GTNAIVAV++YTGYDMEDAMI+NK+S +RG HG
Sbjct: 501 YRLQTPQSPLVRPYMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHG 560
Query: 743 QIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYD 802
+Y++E IDLS+ + D + D + + +D DGLP++G + G+PY S +
Sbjct: 561 SVYKSEFIDLSEKIKQGDDSLVFGVKPGDPRIVQK-LDDDGLPFIGAQLQYGDPYYSYLN 619
Query: 803 KTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHTRNPIIGDKFSSRHGQK 861
T K E+ VD + V ++ + K I R RNP IGDKF+SRHGQK
Sbjct: 620 LNTGESFVMYYKSKENCIVDNIKVCSNDTGSGKFKCICITMRVPRNPTIGDKFASRHGQK 679
Query: 862 GVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
G+ S+LWP DMPF+ +GM PD++ NPH FPSRMTI ML+ES+A K
Sbjct: 680 GILSRLWPAEDMPFTE-SGMVPDILFNPHGFPSRMTIGMLIESMAGK 725
>gi|119593999|gb|EAW73593.1| polymerase (RNA) I polypeptide B, 128kDa, isoform CRA_d [Homo
sapiens]
Length = 837
Score = 585 bits (1508), Expect = e-164, Method: Compositional matrix adjust.
Identities = 331/837 (39%), Positives = 471/837 (56%), Gaps = 81/837 (9%)
Query: 12 LRELVRHHIESFDYMLDEGLS--------------------EMFD--------------- 36
L+EL R H+ESF+Y + EGL + D
Sbjct: 35 LQELTRAHVESFNYAVHEGLGLAVQAIPPFEFAFKDERISFTILDAVISPPTVPKGTICK 94
Query: 37 -------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGAD 89
CR + +Y GKL AD+ + ++++ G P+M+K++ C+L+
Sbjct: 95 EANVYPAECRGRRSTYRGKLTADINWAVNGISKGIIKQFL--GYVPIMVKSKLCNLRNLP 152
Query: 90 SQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVI 149
Q L+ EEA EMGGYFI+NG+E+V R +I+P++N+P++M+R ++ R GYT V +
Sbjct: 153 PQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWKTRGPGYTQYGVSM 212
Query: 150 RCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY 209
CVR++ S+V + L+YL NG+V L F + + + LP+G LKALV +D +IF L
Sbjct: 213 HCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELI--- 269
Query: 210 DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYA 269
KE + VS+ ++I++ E +T+ Q L ++GE F+ ++
Sbjct: 270 ---KGKEDDSFLRNSVSQMLRIVMEE----GCSTQKQVLNYLGECFRVKLNVPDWYPNEQ 322
Query: 270 VAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
AE + I +HL N +KF +L M +KLF+L + DNPDSL NQE+L PG L
Sbjct: 323 AAEFLFNQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMEDNPDSLVNQEVLTPGQLFL 382
Query: 330 IYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTG 389
++LKEKLE WL K + + + NL I + + E + TG
Sbjct: 383 MFLKEKLEGWLVSIKIAFDKKAQKTSVSMNTDNLMRIFTM-----GIDLTKPFEYLFATG 437
Query: 390 RLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFL 449
L ++TGL L Q +G V A++LNF+R++S FR VHRGA FA +RTT+VR+LLPESWGFL
Sbjct: 438 NLRSKTGLGLLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVRRLLPESWGFL 497
Query: 450 CPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLV 509
CPVHTPDGEPCGL+NH+T+ C V + + +I L +GV I P
Sbjct: 498 CPVHTPDGEPCGLMNHLTAVCEVVTQFVYTASI--------PALLCNLGVTPIDGAPHRS 549
Query: 510 KSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGA- 568
S VLLDG +VG + + LR KV IP +EV +P++ +
Sbjct: 550 YS---ECYPVLLDGVMVGWVDKDLAPGIADSLRHFKVLREKRIPPWMEVVLIPMTGKPSL 606
Query: 569 YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPAT 628
YPGL+LFT+P + VRPV+N++L EE LIG EQ+FM + + A T
Sbjct: 607 YPGLFLFTTPCRLVRPVQNLALGKEE-----LIGTMEQIFMNVAIFED----EVFAGVTT 657
Query: 629 HEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTP 688
H+E+ P +LSV+AN P+SDHNQSPRNMYQCQM KQTMGF + + R+D KLY LQTP
Sbjct: 658 HQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTP 717
Query: 689 QTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTE 748
Q+P+VR + Y Y +D YP GTNAIVAV++YTGYDMEDAMI+NK+S +RG HG +Y++E
Sbjct: 718 QSPLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSE 777
Query: 749 TIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTT 805
IDLS+ + D + D + L +D DGLP++G + G+PY S + T
Sbjct: 778 FIDLSEKIKQGDSSLVFGIKPGDPRVLQK-LDDDGLPFIGAKLQYGDPYYSYLNLNT 833
>gi|195350089|ref|XP_002041574.1| GM16738 [Drosophila sechellia]
gi|194123347|gb|EDW45390.1| GM16738 [Drosophila sechellia]
Length = 1129
Score = 585 bits (1508), Expect = e-164, Method: Compositional matrix adjust.
Identities = 325/879 (36%), Positives = 508/879 (57%), Gaps = 63/879 (7%)
Query: 39 RQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKE 98
RQ +SY+G M V + G + G+ P+ML+++ C+L A +++V E
Sbjct: 103 RQLHVSYSG--MCSVRLGWSVNGVEKTPINMDLGEVPIMLRSKACNLGQATPEEMVKHGE 160
Query: 99 EAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSS 158
+E GG F++ G E++ R +I+ ++N+P+ + RSS++DR + ++D ++++ VR+D+SS
Sbjct: 161 HDSEWGGIFVIRGNEKIVRMLIMTRRNHPICVKRSSWKDRGQNFSDLGMLVQTVREDESS 220
Query: 159 VTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKG 218
++ ++YL NG+ + F + +PV ++LK L+D D EI+N L + Y+ ++
Sbjct: 221 LSNVVHYLNNGTAKFMFSHVKRLSYVPVCLILKCLMDYTDEEIYNRLV----QGYESDQY 276
Query: 219 AVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQ---PVIDGLQSESYYAVAETVI 275
V V+ +L EVQ+ ++ T QC IG F+ P + Q + V + ++
Sbjct: 277 YVSC------VQSMLREVQNENVYTHAQCKSFIGNLFRARFPEVPEWQPDE--DVTDFIL 328
Query: 276 RDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEK 335
R+ + +HL+ DKF L++FM+QKLF +N DS QE+LLPGHL YL E+
Sbjct: 329 RERVMIHLDTYEDKFQLIVFMIQKLFQCAQGKYKVENVDSAMMQEVLLPGHLYQKYLSER 388
Query: 336 LEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQT 395
+E W+ + ++ +Q ++ + A + + M + + +G +IE+ L TG +A++T
Sbjct: 389 VESWVSQVRRCLQKKLTSPDA---LVTSAVMTQCMRQ--AGGVGRAIESFLATGNIASRT 443
Query: 396 GLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTP 455
GL L Q +G + AE +N +R++S FRA+HRG+ F +RTT R+LLP++WGF+CPVHTP
Sbjct: 444 GLGLMQNSGLVIMAENINRMRYMSHFRAIHRGSYFTTMRTTEARQLLPDAWGFICPVHTP 503
Query: 456 DGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPA 515
DG PCGLLNH+T TC ++ +R + +I + LI +GM+P + +
Sbjct: 504 DGTPCGLLNHLTLTCEIS--------MRPDPNLVKAIPKHLIDMGMMPLSSR--RYLGEK 553
Query: 516 VLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLF 575
+ V LDG+ +G I SE EK+V LR K+ +P +E+G++P G +PGLYL
Sbjct: 554 LYVVFLDGKHLGHIHQSEAEKIVDELRYGKIFGT--LPQMMEIGFIPFKKNGQFPGLYLA 611
Query: 576 TSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFP--ATHEEIH 633
T P + +RPV N+ + +E IG EQ++MEI + +P TH E+
Sbjct: 612 TGPARMMRPVWNLKW-----KRVEYIGTLEQLYMEIAI------DAKEMYPDFTTHLELA 660
Query: 634 PTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIV 693
T +S +ANL P D+NQSPRNMYQCQM KQTMG +A KLY LQTP TP+
Sbjct: 661 KTHFMSNLANLIPMPDYNQSPRNMYQCQMGKQTMGTPCLNWPKQAANKLYRLQTPGTPLF 720
Query: 694 RTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLS 753
R Y +D++ GTNAIVAV++YTGYDMEDAMI+NK++ +RG +G IY+T+ + L
Sbjct: 721 RPVHYDNIQLDDFAMGTNAIVAVISYTGYDMEDAMIINKAAYERGFAYGSIYKTKFLTL- 779
Query: 754 DDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSR 813
D+ F R+ L +D+DGLP+ G + G P +D +++
Sbjct: 780 ------DKKSSYFARHPHMPELIKHLDTDGLPHPGSKLSYGSPLYCYFDGEVATYKVVKM 833
Query: 814 KGSESVFVDYV----AVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWP 869
E V+ + + D+ K + I R R IGDKF+SR GQKG+CSQ +P
Sbjct: 834 DEKEDCIVESIRQLGSFDLSPKKTVA----ITLRVPRPATIGDKFASRAGQKGICSQKYP 889
Query: 870 DIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
D+PF+ +G+ PD++ NPH FPSRMTIAM++E++A K
Sbjct: 890 AEDLPFTE-SGLIPDIVFNPHGFPSRMTIAMMIETMAGK 927
>gi|17136446|ref|NP_476708.1| RNA polymerase I 135kD subunit [Drosophila melanogaster]
gi|78099796|sp|P20028.2|RPA2_DROME RecName: Full=DNA-directed RNA polymerase I subunit RPA2; Short=RNA
polymerase I subunit 2; AltName: Full=RPA135
gi|7296211|gb|AAF51503.1| RNA polymerase I 135kD subunit [Drosophila melanogaster]
gi|18447630|gb|AAL68376.1| SD02110p [Drosophila melanogaster]
gi|220947372|gb|ACL86229.1| RpI135-PA [synthetic construct]
Length = 1129
Score = 585 bits (1507), Expect = e-164, Method: Compositional matrix adjust.
Identities = 327/877 (37%), Positives = 511/877 (58%), Gaps = 59/877 (6%)
Query: 39 RQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKE 98
RQ +SY+G M V + G + G+ P+ML+++ C+L A +++V E
Sbjct: 103 RQLHVSYSG--MCSVRLGWSVNGVQKTPINMDLGEVPIMLRSKACNLGQATPEEMVKHGE 160
Query: 99 EAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSS 158
+E GG F++ G E++ R +I+ ++N+P+ + RSS++DR + ++D ++++ VR+D+SS
Sbjct: 161 HDSEWGGIFVIRGNEKIVRMLIMTRRNHPICVKRSSWKDRGQNFSDLGMLVQTVREDESS 220
Query: 159 VTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKG 218
++ ++YL NG+ + F + +PV ++LK L+D D EI+N L + Y+ ++
Sbjct: 221 LSNVVHYLNNGTAKFMFSHVKRLSYVPVCLILKCLMDYTDEEIYNRLV----QGYESDQY 276
Query: 219 AVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQ---PVIDGLQSESYYAVAETVI 275
V V+ +L EVQ+ ++ T QC IG F+ P + Q + V + ++
Sbjct: 277 YVSC------VQAMLREVQNENVYTHAQCKSFIGNLFRARFPEVPEWQPDD--DVTDFIL 328
Query: 276 RDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEK 335
R+ + +HL+ DKF L++FM+QKLF +N DS QE+LLPGHL YL E+
Sbjct: 329 RERVMIHLDTYEDKFQLIVFMIQKLFQCAQGKYKVENVDSAMMQEVLLPGHLYQKYLSER 388
Query: 336 LEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQT 395
+E W+ + ++ +Q ++ + A + + M + + +G +IE+ L TG +A++T
Sbjct: 389 VESWVSQVRRCLQKKLTSPDA---LVTSAVMTQCMRQ--AGGVGRAIESFLATGNIASRT 443
Query: 396 GLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTP 455
GL L Q +G + AE +N +R++S FRA+HRG+ F +RTT R+LLP++WGF+CPVHTP
Sbjct: 444 GLGLMQNSGLVIMAENINRMRYMSHFRAIHRGSYFTTMRTTEARQLLPDAWGFICPVHTP 503
Query: 456 DGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPA 515
DG PCGLLNH+T TC ++ +R K+ +I + LI +GM+P + +
Sbjct: 504 DGTPCGLLNHLTLTCEIS--------MRPDPKLVKAIPKHLIDMGMMPLSNR--RYLGEK 553
Query: 516 VLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLF 575
+ V LDG+ +G I SE EK+V LR K+ +P +E+G++P G +PGLY+
Sbjct: 554 LYVVFLDGKHLGHIHQSEAEKIVDELRYGKIFGT--LPQMMEIGFIPFKKNGQFPGLYIA 611
Query: 576 TSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFP--ATHEEIH 633
T P + +RPV N+ + +E IG EQ++MEI + +P TH E+
Sbjct: 612 TGPARMMRPVWNLKW-----KRVEYIGTLEQLYMEIAI------DAKEMYPDFTTHLELA 660
Query: 634 PTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIV 693
T +S +ANL P D+NQSPRNMYQCQM KQTMG +A KLY LQTP TP+
Sbjct: 661 KTHFMSNLANLIPMPDYNQSPRNMYQCQMGKQTMGTPCLNWPKQAANKLYRLQTPGTPLF 720
Query: 694 RTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLS 753
R Y +D++ GTNAIVAV++YTGYDMEDAMI+NK++ +RG +G IY+T+ + L
Sbjct: 721 RPVHYDNIQLDDFAMGTNAIVAVISYTGYDMEDAMIINKAAYERGFAYGSIYKTKFLTL- 779
Query: 754 DDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSR 813
D+ F R+ L +D+DGLP+ G + G P +D +++
Sbjct: 780 ------DKKSSYFARHPHMPELIKHLDTDGLPHPGSKLSYGSPLYCYFDGEVATYKVVKM 833
Query: 814 KGSESVFVDYVAVDMKNSKNL-PQK-ANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDI 871
E V+ ++ S +L P+K I R R IGDKF+SR GQKG+CSQ +P
Sbjct: 834 DEKEDCIVE--SIRQLGSFDLSPKKMVAITLRVPRPATIGDKFASRAGQKGICSQKYPAE 891
Query: 872 DMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
D+PF+ +G+ PD++ NPH FPSRMTIAM++E++A K
Sbjct: 892 DLPFTE-SGLIPDIVFNPHGFPSRMTIAMMIETMAGK 927
>gi|194766529|ref|XP_001965377.1| GF20648 [Drosophila ananassae]
gi|190617987|gb|EDV33511.1| GF20648 [Drosophila ananassae]
Length = 1129
Score = 584 bits (1506), Expect = e-164, Method: Compositional matrix adjust.
Identities = 327/876 (37%), Positives = 504/876 (57%), Gaps = 57/876 (6%)
Query: 39 RQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKE 98
RQ SY+G M V Y G P + G+ P+ML+++ C+L A +++V E
Sbjct: 103 RQLHASYSG--MCSVRLGYSVNGVPSAPINADLGEVPIMLRSKACNLGKASPKEMVKHGE 160
Query: 99 EAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSS 158
+E GG F++ G E++ R +I+ ++N+P+ + RSS++DR + ++D V+++ VR+D++S
Sbjct: 161 HDSEWGGIFVIRGNEKIVRMLIMTRRNHPICIKRSSWKDRGQNFSDIGVLVQTVREDETS 220
Query: 159 VTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKG 218
L+YL NG+ + F + +PV ++LK L+D D EI+N L + Y+ ++
Sbjct: 221 FNNVLHYLNNGTAKFMFSHVKRLSYVPVCLILKCLMDYTDEEIYNRLI----QGYESDQY 276
Query: 219 AVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQ---PVIDGLQSESYYAVAETVI 275
+ V+ +L EVQ+ ++ T QC IG F+ P + Q + V + ++
Sbjct: 277 YLSC------VQSMLREVQNENVYTHSQCRSFIGNLFRSRFPEVPEWQPDE--DVTDFIL 328
Query: 276 RDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEK 335
++ I VHL+ DKF L++FM+QKLF +N DS QE+L+PG L Y+ E+
Sbjct: 329 KERIMVHLDSYEDKFQLIVFMVQKLFQCAQGKQKVENVDSAMMQEVLVPGILYQKYIGER 388
Query: 336 LEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQT 395
+E W+ + ++ +Q ++ N A + + M + + +G S+E+ L TG + ++T
Sbjct: 389 IETWMMQVRRCLQKKLTTPD---SLVNSALMTQCMRQ--AGGVGRSMESFLATGNIVSRT 443
Query: 396 GLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTP 455
GL L Q +G + AE +N +R++S FRA+HRG+ F +RTT R+LLP++WGF+CPVHTP
Sbjct: 444 GLGLMQNSGLVIMAENINRMRYMSHFRAIHRGSYFTTMRTTEARQLLPDAWGFICPVHTP 503
Query: 456 DGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPA 515
DG PCGLLNH+T TC ++ D ++ +I LI +GM LP + P A
Sbjct: 504 DGTPCGLLNHLTLTCEISKRPDP--------ELVKAIPSKLIEMGM---LPLSNRRDPDA 552
Query: 516 VLSVL-LDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYL 574
L V+ LDGR +G I S+ K+V LR K+ + +P +E+G++P G +PGL+L
Sbjct: 553 KLYVVFLDGRHLGHIHQSDATKIVEELRHGKIFGS--LPQMMEIGFIPFKKNGQFPGLFL 610
Query: 575 FTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFP--ATHEEI 632
T P + +RPV N+ + +E IG EQ++MEI + +P TH E+
Sbjct: 611 ATGPARMMRPVWNLKW-----KKVEYIGTLEQLYMEIAIDP------KEMYPDFTTHLEL 659
Query: 633 HPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPI 692
T +S +ANL P D+NQSPRNMYQCQM KQTMG +A KLY LQTP TP+
Sbjct: 660 AKTHFMSNLANLIPMPDYNQSPRNMYQCQMGKQTMGTPCLNWPKQAANKLYRLQTPGTPL 719
Query: 693 VRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDL 752
R Y +D++ GTNAIVAV++YTGYDMEDAMI+NK++ +RG +G IY+T+ + L
Sbjct: 720 FRPVHYDNIKLDDFAMGTNAIVAVISYTGYDMEDAMIINKAAYERGFAYGSIYKTKFVSL 779
Query: 753 SDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNS 812
D+ F R+ L +D+DGLP+ G + G P +D +++
Sbjct: 780 -------DKKSSYFCRHPHMPELVKYLDTDGLPHPGSKLSYGNPLYCYFDGEVATYKVVK 832
Query: 813 RKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDID 872
E FVD + ++ + I R R IGDKF+SR GQKG+CSQ +P D
Sbjct: 833 MDEKEDCFVDSIRQLGSFDVSVKKMVAITLRVPRPATIGDKFASRAGQKGICSQKYPAED 892
Query: 873 MPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
+PF+ +G+ PD++ NPH FPSRMTIAM++E++A K
Sbjct: 893 LPFTE-SGLIPDIVFNPHGFPSRMTIAMMIETMAGK 927
>gi|8474|emb|CAA35185.1| RNA polymerase 3, second largest subunit [Drosophila melanogaster]
Length = 1129
Score = 583 bits (1504), Expect = e-163, Method: Compositional matrix adjust.
Identities = 325/879 (36%), Positives = 510/879 (58%), Gaps = 63/879 (7%)
Query: 39 RQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKE 98
RQ +SY+G M V + G + G+ P+ML+++ C+L A +++V E
Sbjct: 103 RQLHVSYSG--MCSVRLGWSVNGVQKTPINMDLGEVPIMLRSKACNLGQATPEEMVKHGE 160
Query: 99 EAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSS 158
+E GG F++ G E++ R +I+ ++N+P+ + RSS++DR + ++D ++++ VR+D+SS
Sbjct: 161 HDSEWGGIFVIRGNEKIVRMLIMTRRNHPICVKRSSWKDRGQNFSDLGMLVQTVREDESS 220
Query: 159 VTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKG 218
++ ++YL NG+ + F + +PV ++LK L+D D EI+N L + Y+ ++
Sbjct: 221 LSNVVHYLNNGTAKFMFSHVKRLSYVPVCLILKCLMDYTDEEIYNRLV----QGYESDQY 276
Query: 219 AVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQ---PVIDGLQSESYYAVAETVI 275
V V+ +L EVQ+ ++ T QC IG F+ P + Q + V + ++
Sbjct: 277 YVSC------VQAMLREVQNENVYTHAQCKSFIGNLFRARFPEVPEWQPDD--DVTDFIL 328
Query: 276 RDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEK 335
R+ + +HL+ DKF L++FM+QKLF +N DS QE+LLPGHL YL E+
Sbjct: 329 RERVMIHLDTYEDKFQLIVFMIQKLFQCAQGKYKVENVDSSMMQEVLLPGHLYQKYLSER 388
Query: 336 LEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQT 395
+E W+ + ++ +Q ++ + A + + M + + +G +IE+ L TG +A++T
Sbjct: 389 VESWVSQVRRCLQKKLTSPDA---LVTSAVMTQCMRQ--AGGVGRAIESFLATGNIASRT 443
Query: 396 GLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTP 455
GL L Q +G + AE +N +R++S FRA+HRG+ F +RTT R+LLP++WGF+CPVHTP
Sbjct: 444 GLGLMQNSGLVIMAENINRMRYMSHFRAIHRGSYFTTMRTTEARQLLPDAWGFICPVHTP 503
Query: 456 DGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPA 515
DG PCGLLNH+T TC ++ +R K+ +I + LI +GM+P + +
Sbjct: 504 DGTPCGLLNHLTLTCEIS--------MRPDPKLVKAIPKHLIDMGMMPLSNR--RYLGEK 553
Query: 516 VLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLF 575
+ V LDG+ +G I SE EK+V LR K+ +P +E+G++P G +PGLY+
Sbjct: 554 LYVVFLDGKHLGHIHQSEAEKIVDELRYGKIFGT--LPQMMEIGFIPFKKNGQFPGLYIA 611
Query: 576 TSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFP--ATHEEIH 633
T P + +RPV N+ + +E IG EQ++MEI + +P TH E+
Sbjct: 612 TGPARLMRPVWNLKW-----KRVEYIGTLEQLYMEIAI------DAKEMYPDFTTHLELA 660
Query: 634 PTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIV 693
T +S +ANL P D+NQSPRNMYQCQM KQTMG +A KLY LQTP TP+
Sbjct: 661 KTHFMSNLANLIPMPDYNQSPRNMYQCQMGKQTMGTPCLNWPKQAANKLYRLQTPGTPLF 720
Query: 694 RTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLS 753
R Y +D++ GTNAIVAV++YTGYDMEDAMI+NK++ +RG +G IY+T+ + L
Sbjct: 721 RPVHYDIIQLDDFAMGTNAIVAVISYTGYDMEDAMIINKAAYERGFAYGSIYKTKFLTL- 779
Query: 754 DDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSR 813
D+ F R+ L +D+DGLP+ G + G P +D +++
Sbjct: 780 ------DKKSSYFARHPHMPELIKHLDTDGLPHPGSKLSYGSPLYCYFDGEVATYKVVKM 833
Query: 814 KGSESVFVDYV----AVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWP 869
E V+ + + D+ +K + I R R IGDKF+SR GQKG+CSQ +P
Sbjct: 834 DEKEDCIVESIRQLGSFDLSPTKMVA----ITLRVPRPATIGDKFASRAGQKGICSQKYP 889
Query: 870 DIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
D+PF+ +G+ PD++ NPH FPSRMTIAM++E++A K
Sbjct: 890 AEDLPFTE-SGLIPDIVFNPHGFPSRMTIAMMIETMAGK 927
>gi|402891940|ref|XP_003909186.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 5
[Papio anubis]
Length = 924
Score = 582 bits (1501), Expect = e-163, Method: Compositional matrix adjust.
Identities = 327/766 (42%), Positives = 449/766 (58%), Gaps = 47/766 (6%)
Query: 149 IRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCC 208
+ CVR++ S+V + L+YL NG+V L F + + + LP+G LKALV +D +IF L
Sbjct: 1 MHCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELI-- 58
Query: 209 YDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYY 268
KE + VS+ ++I++ E +T+ Q L ++GE F+ ++
Sbjct: 59 ----KGKEDDSFLRNSVSQMLRIVMEE----GCSTQKQVLNYLGECFRVKLNVPDWYPNE 110
Query: 269 AVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLI 328
AE + I +HL + +KF +L M +KLF+L + DNPDSL NQE+L PG L
Sbjct: 111 QAAEFLFNQCICIHLKSSTEKFYMLCLMTRKLFALAKGECMEDNPDSLVNQEVLTPGQLF 170
Query: 329 TIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKT 388
++LKEKLE WL K + + + NL I + + E + T
Sbjct: 171 LMFLKEKLEGWLVSIKIAFDKKAQKTNVSMNTDNLMRIFTM-----GIDLTKPFEYLFAT 225
Query: 389 GRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGF 448
G L ++TGL L Q +G V A++LNF+R++S FR VHRGA FA +RTT+VR+LLPESWGF
Sbjct: 226 GNLRSKTGLGLLQNSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVRRLLPESWGF 285
Query: 449 LCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKL 508
LCPVHTPDGEPCGL+NH+T+ C V + + SI +L +G+ P
Sbjct: 286 LCPVHTPDGEPCGLMNHLTAVCEVVTQF----------VYTASIPALLCNLGVTP----- 330
Query: 509 VKSGPPAVLS----VLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLS 564
V P S VLLDG +VG + + LR KV IP +EV +P++
Sbjct: 331 VDGAPHRPYSECYPVLLDGVMVGWVDKELAPGIADSLRHFKVLREKRIPPWMEVVLIPMT 390
Query: 565 LGGA-YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRN 623
+ YPGL+LFT+P + VRPV+N+ L EE LIG EQ+FM + +
Sbjct: 391 GKPSLYPGLFLFTTPCRLVRPVQNLELGKEE-----LIGTMEQIFMNVAIFED----EVF 441
Query: 624 AFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLY 683
A TH+E+ P +LSV+AN P+SDHNQSPRNMYQCQM KQTMGF + + R+D KLY
Sbjct: 442 AGVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLY 501
Query: 684 HLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQ 743
LQTPQ+P+VR + Y Y +D YP GTNAIVAV++YTGYDMEDAMI+NK+S +RG HG
Sbjct: 502 RLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGS 561
Query: 744 IYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDK 803
+Y++E IDLS+ + D + D + L +D DGLP++G + G+PY S +
Sbjct: 562 VYKSEFIDLSEKIKQGDSSLVFGIKPGDPRVLQK-LDDDGLPFIGAKLQYGDPYYSYLNL 620
Query: 804 TTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHTRNPIIGDKFSSRHGQKG 862
T K E+ VD + V ++ + K I R RNP IGDKF+SRHGQKG
Sbjct: 621 NTGESFVMYYKSKENCVVDNIKVCSNDTGSGKFKCVCITMRVPRNPTIGDKFASRHGQKG 680
Query: 863 VCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
+ S+LWP DMPF+ +GM PD++ NPH FPSRMTI ML+ES+A K
Sbjct: 681 ILSRLWPAEDMPFTE-SGMVPDILFNPHGFPSRMTIGMLIESMAGK 725
>gi|195032695|ref|XP_001988542.1| GH11221 [Drosophila grimshawi]
gi|193904542|gb|EDW03409.1| GH11221 [Drosophila grimshawi]
Length = 1125
Score = 582 bits (1501), Expect = e-163, Method: Compositional matrix adjust.
Identities = 329/878 (37%), Positives = 508/878 (57%), Gaps = 61/878 (6%)
Query: 39 RQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKE 98
RQ SY+G+ + + D + + G+ P+ML+++ C+L A ++V E
Sbjct: 99 RQLHASYSGQCSLRLGWSVNDLDKSAIN--VDLGEVPIMLRSQACNLGQASPTEMVKHGE 156
Query: 99 EAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSS 158
+E GG F++ G E++ R +I+ ++N+P+ + RSS++DR +++ V+++ VR D+ S
Sbjct: 157 HDSEWGGIFVIRGNEKIVRMLIMTRRNHPICVKRSSWKDRGHNFSELGVMVQTVRDDELS 216
Query: 159 VTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKG 218
+T L+YL NG+ R F + +PV ++LK L+D D +I+N C + Y+ ++
Sbjct: 217 LTNTLHYLNNGTARFMFSHMKRLSYVPVCLILKCLMDYTDEQIYN----CLVQGYESDQY 272
Query: 219 AVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIG----EHFQPVIDGLQSESYYAVAETV 274
+ V+ +L +VQ+ + T QC IG F V + L E AV E +
Sbjct: 273 YLTC------VQSMLRDVQNEGVYTSAQCRSFIGTLFRSRFPEVPEWLPDE---AVTEFI 323
Query: 275 IRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKE 334
+R+ I VHL N +KF L++FM+QKLF +N DS QE+LLPGHL YL E
Sbjct: 324 LRERIMVHLQTNEEKFQLIVFMVQKLFQCAQGKFKVENVDSAMMQEVLLPGHLYQKYLGE 383
Query: 335 KLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQ 394
++E WL + +K + ++ + + + + M + + +G SIE+ L TG +A++
Sbjct: 384 RIEMWLMQLRKCLLKKLSTAD---SLVSSSIMTQCMRQ--AGGVGRSIESFLATGNVASR 438
Query: 395 TGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHT 454
+GL L Q +G + AE +N +R++S FRA+HRG+ F +RTT R+LLP++WGF+CPVHT
Sbjct: 439 SGLGLMQSSGLVIMAENINRMRYMSHFRAIHRGSYFTTMRTTEARQLLPDAWGFICPVHT 498
Query: 455 PDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPP 514
PDG PCGLLNH+T TC ++ D K+ I +L +GM LP + P
Sbjct: 499 PDGTPCGLLNHLTLTCEISKRPDP--------KLVQGIPALLFEMGM---LPLTQQDHPD 547
Query: 515 AVLSVL-LDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLY 573
A L V+ LDG+ +G I +E +K+V LR K++ +P +E+G++P G +PGL+
Sbjct: 548 AKLYVVFLDGKHLGHIFQTEADKIVEDLRYAKITGQ--VPKMMEIGFIPFKKNGQFPGLF 605
Query: 574 LFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFP--ATHEE 631
L T P + +RPV N+ + +E IG EQ++MEI + + +P TH E
Sbjct: 606 LSTGPARMMRPVWNLKW-----KQVEYIGTLEQLYMEIAIDE------KEMYPDFTTHLE 654
Query: 632 IHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTP 691
+ T +S +ANL P D+NQSPRNMYQCQM KQTMG +A KLY LQTP TP
Sbjct: 655 LSKTHFMSNLANLIPMPDYNQSPRNMYQCQMGKQTMGTPCLNWPKQAANKLYRLQTPATP 714
Query: 692 IVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETID 751
+ R Y +D++ GTNAIVAV++YTGYDMEDAMI+NK++ +RG +G IY+++ +
Sbjct: 715 LFRPVHYDNIQLDDFAMGTNAIVAVISYTGYDMEDAMIINKAAYERGFAYGSIYKSKFVQ 774
Query: 752 LSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTN 811
L+ + Q F R+ + L +D+DGLP G + G P+ +D ++++
Sbjct: 775 LA-------KKQSYFARHPNMPELIKYLDTDGLPQPGAKLSYGCPFYCYFDGEVSTFKVV 827
Query: 812 SRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPD 870
E VD V + + + P+K I R R IGDKF+SR GQKG+CSQ +P
Sbjct: 828 KMDEKEDCIVDSVR-QLGSFELTPRKTVCITLRVARPATIGDKFASRAGQKGICSQKYPA 886
Query: 871 IDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
D+PF+ +G+ PD++ NPH FPSRMTIAM++E++A K
Sbjct: 887 EDLPFTE-SGLIPDIVFNPHGFPSRMTIAMMIETMAGK 923
>gi|221043492|dbj|BAH13423.1| unnamed protein product [Homo sapiens]
Length = 924
Score = 580 bits (1496), Expect = e-163, Method: Compositional matrix adjust.
Identities = 326/766 (42%), Positives = 448/766 (58%), Gaps = 47/766 (6%)
Query: 149 IRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCC 208
+ CVR++ S+V + L+YL NG+V L F + + + LP+G LKALV +D +IF L
Sbjct: 1 MHCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELI-- 58
Query: 209 YDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYY 268
KE + VS+ ++I++ E T+ Q L ++GE F+ ++
Sbjct: 59 ----KGKEDDSFLRNSVSQMLRIVMEE----GCLTQKQVLNYLGECFRVKLNVPDWYPNE 110
Query: 269 AVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLI 328
AE + I +HL N +KF +L M +KLF+L + DNPDSL NQE+L PG L
Sbjct: 111 QAAEFLFNQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMEDNPDSLVNQEVLTPGQLF 170
Query: 329 TIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKT 388
++LKEKLE WL K + + + NL I + + E + T
Sbjct: 171 LMFLKEKLEGWLVSIKIAFDKKAQKTSVSMNTDNLMRIFTM-----GIDLTKPFEYLFAT 225
Query: 389 GRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGF 448
G L ++TGL L Q +G V A++LNF+R++S FR VHRGA FA +RTT+VR+LLPESWGF
Sbjct: 226 GNLRSKTGLGLLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVRRLLPESWGF 285
Query: 449 LCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKL 508
LCPVHTPDGEPCGL+NH+T+ C V + + SI +L +G+ P
Sbjct: 286 LCPVHTPDGEPCGLMNHLTAVCEVVTQF----------VYTASIPALLCNLGVTP----- 330
Query: 509 VKSGPPAVLS----VLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLS 564
+ P S VLLDG +VG + + LR KV IP +EV +P++
Sbjct: 331 IDGAPHRSYSECYPVLLDGVMVGWVDKDLAPGIADSLRHFKVLREKRIPPWMEVVLIPMT 390
Query: 565 LGGA-YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRN 623
+ YPGL+LFT+P + VRPV+N++L EE LIG EQ+FM + +
Sbjct: 391 GKPSLYPGLFLFTTPCRLVRPVQNLALGKEE-----LIGTMEQIFMNVAIFED----EVF 441
Query: 624 AFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLY 683
A TH+E+ P +LSV+AN P+SDHNQSPRNMYQCQM KQTMGF + + R+D KLY
Sbjct: 442 AGVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLY 501
Query: 684 HLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQ 743
LQTPQ+P+VR + Y Y +D YP GTNAIVAV++YTGYDMEDAMI+NK+S +RG HG
Sbjct: 502 RLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGS 561
Query: 744 IYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDK 803
+Y++E IDLS+ + D + D + L +D DGLP++G + G+PY S +
Sbjct: 562 VYKSEFIDLSEKIKQGDSSLVFGIKPGDPRVLQK-LDDDGLPFIGAKLQYGDPYYSYLNL 620
Query: 804 TTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHTRNPIIGDKFSSRHGQKG 862
T K E+ VD + V ++ + K I R RNP IGDKF+SR GQKG
Sbjct: 621 NTGESFVMYYKSKENCVVDNIKVCSNDTGSGKFKCVCITMRVPRNPTIGDKFASRRGQKG 680
Query: 863 VCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
+ S+LWP DMPF+ +GM PD++ NPH FPSRMTI ML+ES+A K
Sbjct: 681 ILSRLWPAEDMPFTE-SGMVPDILFNPHGFPSRMTIGMLIESMAGK 725
>gi|361125151|gb|EHK97205.1| putative DNA-directed RNA polymerase I subunit RPA2 [Glarea
lozoyensis 74030]
Length = 991
Score = 580 bits (1495), Expect = e-162, Method: Compositional matrix adjust.
Identities = 330/789 (41%), Positives = 471/789 (59%), Gaps = 62/789 (7%)
Query: 149 IRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCC 208
+R VR D++S T L+YL +G+V F + EYL+PV +V+KALV+TND EIF+ +
Sbjct: 1 MRSVRPDETSQTNVLHYLDDGNVIFRFSWKKAEYLVPVMMVMKALVETNDREIFDGIVG- 59
Query: 209 YDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYY 268
+ G +R +++L + L T+ Q +GE F+ V+ + S Y
Sbjct: 60 -----NNQSGESKKEFFFDRAELLLRTYKSYGLYTKSQTRAFLGEKFRVVLGVPATMSNY 114
Query: 269 AVAETVIRDYIFVHLNDNN-------DKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEI 321
+R + VHL + N DKF +L+FM++KL++LV DNPD++QNQEI
Sbjct: 115 DCGTEFLRKIVLVHLGNANVTETQDTDKFKMLLFMIRKLYALVSGECAVDNPDAVQNQEI 174
Query: 322 LLPGHLITIYLKEKLEDWLRKG-KKLIQDEIENNGKKFDFFNLANIKKV---MEKNPSKQ 377
LL G L + LKE LED++ + +++D I + ++ F +KK +
Sbjct: 175 LLGGFLYGMILKENLEDFVSSQIQAVLRDHIRKSPEE-TFSTPEFLKKFPVQILSRAGNN 233
Query: 378 IGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS 437
IG +E + TG L + TGLDLQQ +G+TV AE++NFLRFIS FR VHRG+ FA L+TT+
Sbjct: 234 IGGKLEYFMSTGNLVSPTGLDLQQVSGFTVVAEKINFLRFISHFRMVHRGSFFAQLKTTT 293
Query: 438 VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLI 497
VRKLLPESWGFLCPVHTPDG PCGLLNH+ C+ I+ S +SI ++++
Sbjct: 294 VRKLLPESWGFLCPVHTPDGSPCGLLNHLAHKCK----------IQIQSIDVSSIPQLVV 343
Query: 498 GVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLE 557
+G + S K + + LDGR++G + + LR KV +P +LE
Sbjct: 344 DLGAVSSNSSSTKES----VVIQLDGRILGWCTPKQALLIGDTLRYWKVEGTHNVPKELE 399
Query: 558 VGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC--PD 615
+GYVP S GGAYPG+Y+ + P +F+RPV+ + L E+ +GP EQ FM I P+
Sbjct: 400 IGYVPNSRGGAYPGIYMSSGPSRFIRPVKYLPLDKED-----FVGPQEQPFMSIAVTEPE 454
Query: 616 GGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALK 675
G +TH E PT +LS++AN+TP+SDHNQSPRNMYQCQM KQ+MG A++
Sbjct: 455 IISG------ESTHVEFDPTNILSILANMTPFSDHNQSPRNMYQCQMGKQSMGTPGTAIR 508
Query: 676 FRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSV 735
+R D K Y LQT QTPIVR + +YG D +P G NA+VAV++YTGYDM+DAMI+NKS+
Sbjct: 509 YRTDNKSYRLQTGQTPIVRAPLHNEYGFDNFPNGMNAVVAVISYTGYDMDDAMIINKSAH 568
Query: 736 DRGMCHGQIYQTETIDL--SDDGNKVDRGQKLFRRNKDAK---SLHSVIDSDGLPYVGQM 790
+RG HG IY+ + +DL D + +KLF A+ + + +D DGLP++G++
Sbjct: 569 ERGFGHGTIYKVKKLDLEEGDKSRSSKKVKKLFGFAPGAEIKAEVKADLDDDGLPHIGRL 628
Query: 791 IHPGEPYCSIYDKTTNS----------WRTNSRKGSESVFVDYV-AVDMKNSKNLPQKAN 839
++ + + T ++ K E F++ V + +N + + +
Sbjct: 629 LNDNSIIAAWHTVTQDATGDFVNKDGITHYERYKEKELAFIEEVRLIGNENGTDPLRTMS 688
Query: 840 IRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIA 899
I+ R R+P++GDKFSSRHGQKGVCSQ WP DMPF+ +GM+PD IINPHAFPSRMTI
Sbjct: 689 IKLRVPRSPVVGDKFSSRHGQKGVCSQKWPTYDMPFT-ESGMQPDTIINPHAFPSRMTIG 747
Query: 900 MLLESVAAK 908
M +ES+A K
Sbjct: 748 MFVESLAGK 756
>gi|358334878|dbj|GAA28300.2| DNA-directed RNA polymerase I subunit RPA2 [Clonorchis sinensis]
Length = 1153
Score = 575 bits (1483), Expect = e-161, Method: Compositional matrix adjust.
Identities = 341/899 (37%), Positives = 506/899 (56%), Gaps = 61/899 (6%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR+ +Y L +V + V+ G+ P+M+ +R C+L + +
Sbjct: 3 CRRQGTTYGATLRLNVRLSINGTAASVLE--IPCGEVPIMVLSRACNLSKLNRAEFPKHL 60
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
EE E+GGYFI+NG ERV R +I+ ++N+P+++ R SF+ R GY++ A+++RCVR+D++
Sbjct: 61 EEEREIGGYFIVNGKERVLRLLIMTRRNFPLAISRPSFKRRGTGYSEFAIIMRCVREDEA 120
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
T+ L++L+NG L F ++ +++ +P+ I+L+A+V+ + E+F+ + +
Sbjct: 121 VSTMMLHWLMNGEPVLAFIVEREQFFVPISILLRAMVNKTEFEMFDDI----------RR 170
Query: 218 GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRD 277
G+ S + E IL ++D +++ + L ++G F+ + S + +IR
Sbjct: 171 GSGESLSLEETAMRILVRLKDEDYSSQTRALSYMGRLFRGRMRLPTSATDEDAGIFLIRR 230
Query: 278 YIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLE 337
YI +HL+ DK++LL FM++KL + V + D+L QE+LLP L L+EK+
Sbjct: 231 YIGIHLDSFVDKYHLLCFMIRKLHAFVSGQCCEETNDNLMFQEVLLPSTLYLQVLREKIR 290
Query: 338 DWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGL 397
L K I N K + L + ++ + P +IG+++ +L TG L
Sbjct: 291 QLLDNTKDHILARSRKNKVKINSTLLQ--QSLLSRAP--EIGSAMTYLLSTGNLPPTLRS 346
Query: 398 DLQ-----QRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPV 452
DL Q +G +V A+ +NFLR + FRAVHRGA F +RTTSVR+LLPE+WGF+CPV
Sbjct: 347 DLAAQFGGQASGLSVPADNVNFLRLAAQFRAVHRGAMFTDIRTTSVRRLLPEAWGFICPV 406
Query: 453 HTPDGEPCGLLNHMT----STCRVA--SYYDSRGNIRDFSKMRTSIL-RVLIGVGMIPSL 505
HTPDG PCGLLNH+ + C S D+ +K+R+ L R L GV
Sbjct: 407 HTPDGAPCGLLNHLAEPVEAVCETPKHSTNDALAAWLTSNKLRSVELSRQLSGV------ 460
Query: 506 PKLVKSGPPAVLSVLLDGRVVGVIPS-SEIEKVVAHLRRLKVSAASV-IPDDLEVGYVP- 562
+ L VLLDGR+VG + S E E++ LR LK+ S +P LE+ VP
Sbjct: 461 -----TEAQNALPVLLDGRLVGWLSSLIEAEQLADELRDLKLDTQSKHVPYSLEIALVPP 515
Query: 563 LSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN--IELIGPFEQVFMEIRCPDGGDGG 620
+G YPGL+LFT + +RPV+N+ ++ +E IG FEQ +++I +
Sbjct: 516 TDVGSQYPGLFLFTGGSRLLRPVKNVRHGNQPEAGGLVEWIGTFEQPYLDIAVTQE-ELQ 574
Query: 621 RRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQ 680
R +H E+ P G+ S VA LTPY D NQSPRNMYQCQMAKQTMG S + R+D
Sbjct: 575 ERPEGAQSHMELTPEGIFSFVAGLTPYQDFNQSPRNMYQCQMAKQTMGHSCYTWRHRSDV 634
Query: 681 KLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMC 740
K Y L TPQ+P+VRT TY KY ID YP G NAIVAV++YTGYDMEDAM++NK S +RG+
Sbjct: 635 KAYRLLTPQSPLVRTKTYVKYDIDHYPLGFNAIVAVMSYTGYDMEDAMVINKGSYERGLA 694
Query: 741 HGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSV---------IDSDGLPYVGQMI 791
IY++E +DLS + + F R K + H +D DG P VG +
Sbjct: 695 GACIYKSEVLDLSVLNKQAISKSQGFARRKTVAAEHYFGTPNQPPPGLDLDGFPPVGTRL 754
Query: 792 HPGEP--YCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPI 849
PG YC + +T ++ G + +VD ++++ S A I R R P
Sbjct: 755 EPGVSALYCYTHVETQHTTIVKYEGGEQIAYVDAISLNGSWS-----HATITLRLPRPPD 809
Query: 850 IGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
IGDK+SSRHGQKG+ S L P +MP+S +G+ PDLI NPH FP+RMT+ M++E +A K
Sbjct: 810 IGDKYSSRHGQKGINSLLVPSDEMPWSVTSGVVPDLIFNPHGFPTRMTMGMMVEFLAGK 868
>gi|340504398|gb|EGR30844.1| hypothetical protein IMG5_122450 [Ichthyophthirius multifiliis]
Length = 864
Score = 573 bits (1476), Expect = e-160, Method: Compositional matrix adjust.
Identities = 318/803 (39%), Positives = 492/803 (61%), Gaps = 42/803 (5%)
Query: 34 MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKL 93
M + CR ++ +Y+ L+A + + +D GS V + R + G+ P+++ + CHL +S++L
Sbjct: 27 MPEECRISRKTYSAPLLATI-CRTIDEGS-VEKIRLSLGEVPIVVMSDHCHLSKLNSRQL 84
Query: 94 VSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVR 153
V+ E+ E GGYFI+NG E++ R +I+ K+NYP++ +R S+ +R YT AV ++CVR
Sbjct: 85 VNAHEDCNEFGGYFIVNGNEKLVRMLIMQKRNYPIAFLRPSYVNRGPNYTQYAVQMKCVR 144
Query: 154 KDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKY 213
+D + ++ L+Y+ +G V L + +E+L+P+ ++LK L D +DL I+N L
Sbjct: 145 EDLYAKSITLHYISDGQVFLRLLHRKQEFLIPIIVILKCLGDFSDLHIYNKLV------- 197
Query: 214 KKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSE-SYYAVAE 272
KG G +S+RV++++ + ++L ++ +CL ++G+ F+ V++ +E + V E
Sbjct: 198 ---KGQSGKSSLSDRVEVLIRGAKTMNLNSKQECLAYLGKSFRVVLNINNNEVNDKEVGE 254
Query: 273 TVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYL 332
I + I VHL +N DKFN+L FM+ KL+ LV +N DSLQNQE+LLPGHL T+ L
Sbjct: 255 IFINENICVHLKNNMDKFNILCFMVLKLYGLVSDEISPENLDSLQNQEVLLPGHLYTMIL 314
Query: 333 KEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLA 392
KEK+E+ L+ ++ + + + + +++ IKK +E S IGT IE L TG L
Sbjct: 315 KEKIEEMLQGIRQKVFKDGQKPEEAQKTLHVSYIKKAIEIQGS--IGTKIEYFLSTGNLK 372
Query: 393 TQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPV 452
+QTGLDL Q G+ + A++LN +RF+S FR+VHRGA F ++TT+VRKLLPE+WGF+CPV
Sbjct: 373 SQTGLDLMQNKGFAIIADKLNNMRFLSHFRSVHRGAYFTEMKTTTVRKLLPENWGFICPV 432
Query: 453 HTPDGEPCGLLNHMTSTCRVASY--YDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVK 510
HTPDG PCGLLNH+ TC+ + YD +I D K+ + GM P + L
Sbjct: 433 HTPDGAPCGLLNHIAMTCKPLTRPGYDKNKHI-DLQKLCCQL-------GMNPIVNDLSI 484
Query: 511 SGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKV--SAASVIPDDLEVGYVPLSLGGA 568
PP +L+V+LDG+V+G I + E+ L+ LK+ ++ DLE+G + +
Sbjct: 485 IYPPNMLTVILDGKVIGYIENECAEQFCQSLKYLKIVQDQERLVSADLEIGLIRKEIQDK 544
Query: 569 ---YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAF 625
+ G+YL+T+ +FVRPVR++ L +QN E I PFEQV + I C RN
Sbjct: 545 QILFAGVYLYTNEGRFVRPVRHLHL----NQN-EWISPFEQVHLSIACTQED---IRN-- 594
Query: 626 PATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHL 685
++E+ P+ +LS++ + P+ ++NQSPRNMYQCQMAKQTMG + +R D K Y L
Sbjct: 595 DTEYQELSPSYILSILPSQIPFLNYNQSPRNMYQCQMAKQTMGTPMHNFPYRFDNKSYRL 654
Query: 686 QTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIY 745
+PQ P+V+ +YG+ +YP+GTNA+VAV++YTGYDMEDAMILNKSS +RG HG +Y
Sbjct: 655 MSPQLPMVKGQNPEEYGLADYPSGTNAVVAVISYTGYDMEDAMILNKSSYERGFGHGCVY 714
Query: 746 QTETIDLSDDGNKVDRGQKLFR--RNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDK 803
+ T D+ + + K+ RN D + ++ DG+P +G +I G I D
Sbjct: 715 KNYTYDIGEFNKEKSSKFKMLHQVRNVDKSQIQEGLEIDGIPAIGSVIKKGTAVFQIQDT 774
Query: 804 TTNSWRTNSRKGSESVFVDYVAV 826
N+ +T K SE +D VA+
Sbjct: 775 QKNTMKTFYHKESEMGRLDGVAI 797
>gi|158288277|ref|XP_310152.4| AGAP009539-PA [Anopheles gambiae str. PEST]
gi|157019172|gb|EAA05843.4| AGAP009539-PA [Anopheles gambiae str. PEST]
Length = 1152
Score = 572 bits (1475), Expect = e-160, Method: Compositional matrix adjust.
Identities = 348/977 (35%), Positives = 517/977 (52%), Gaps = 138/977 (14%)
Query: 10 EPLRELVRHHIESFDYMLDEGLSEMFD--------------------------------- 36
E L L R HI+SF+YMLDEG+ ++
Sbjct: 30 EILANLGRPHIDSFNYMLDEGIEDVLSRLVPVCFEMANGSRIKLRITDISIAPPTVPMML 89
Query: 37 -----------HCRQAKISYTGKLMADVEFQYLDA--GSPVVRERFNFGQFPVMLKTRRC 83
CRQ +Y G + ++ LD SP+ RE G+ P+ML++ C
Sbjct: 90 VEVAEKRVFPSECRQKSDTYAGMCTITLNWE-LDGMPQSPLTRE---MGRIPIMLRSNAC 145
Query: 84 HLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYT 143
+L A ++LV+ E E GGYF++ G E++ R +I ++NYP+++ R+++RDR + ++
Sbjct: 146 NLANATPEELVARGEHEDEWGGYFVVRGNEKLIRMLISTRRNYPIAVNRNTWRDRGKDFS 205
Query: 144 DKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFN 203
V IRCVR+DQ S L+YL NG+ +L + +PV ++LKAL D +D EI+
Sbjct: 206 ATGVFIRCVREDQYSTRNVLHYLTNGTAKLMISVSRALSFIPVMMILKALGDRSDNEIYK 265
Query: 204 HLTCC--YDEKYKKEKGAVGSPLVSERVKIILAEVQDL---SLTTRLQCLQHIGEHFQPV 258
LT C D+ YK+ I+A ++DL +L + +C ++G +
Sbjct: 266 KLTACDESDQYYKR---------------CIMAMLRDLHAENLHSSQECRSYMGMLLRRR 310
Query: 259 IDGLQSESYYA---VAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDS 315
+ + ++Y+ +++ + +HL+ DKFNLL+ M+ KL+++V ++ D
Sbjct: 311 LMDINLPAWYSDEQAGHFLLQHCVLIHLDSVEDKFNLLVHMVHKLYAVVQGRHAVESLDG 370
Query: 316 LQNQEILLPGHLITIYLKEKLEDWLRKGK----KLIQDEIENNGKKFDFFN-LANIKKVM 370
QEILL GH+ L+E ++ + KL D + L N+
Sbjct: 371 TMMQEILLGGHIYQGLLREMCLSTMQYVRINLMKLCPDRTSPMVTTHELAQALKNVAGF- 429
Query: 371 EKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASF 430
++P L TG LA T + L Q G + AE +N +R++S FRAVHRG+ F
Sbjct: 430 -QHP-------FTMFLATGNLAKATEMGLMQSTGLVIIAENINRMRYMSHFRAVHRGSYF 481
Query: 431 AGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRT 490
+RTT R+LLP++WGF+CPVHTPDGEPCGLLNHMTS C V+ D ++
Sbjct: 482 LTMRTTEARQLLPDAWGFICPVHTPDGEPCGLLNHMTSDCTVSVTQDP--------ELVA 533
Query: 491 SILRVLIGVGMIPSLPKLVKSGPPAVLS------VLLDGRVVGVIPSSEIEKVVAHLRRL 544
+I L+ +GM P +G LS V+L+G+++G++ + +VV LR L
Sbjct: 534 NIPATLVSLGMQPFGGD---AGSFGTLSHDDGYVVMLEGKMLGMLARATASQVVQKLRLL 590
Query: 545 KVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPF 604
K+ + IP+ E+ +VP GG YPGL+LF P + +RPV+N+ ELIG F
Sbjct: 591 KIEGKT-IPNQTEIAFVPAREGGQYPGLFLFVGPARMMRPVKNLL-----CGKTELIGSF 644
Query: 605 EQVFMEIRCPDGGDGGRRNAFP--ATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQM 662
EQV+M+I A+P TH E+ T +S +A L P D NQSPRNMYQCQM
Sbjct: 645 EQVYMDICVTP------EEAYPQLTTHAELAKTSFMSNLAQLIPMPDCNQSPRNMYQCQM 698
Query: 663 AKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGY 722
KQTMG + K+Y LQTP TP+ R + +D Y GTNAIVAV++YTGY
Sbjct: 699 GKQTMGTPCHNWDKQCIAKMYRLQTPATPLFRPVHHDNIALDNYAMGTNAIVAVISYTGY 758
Query: 723 DMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSD 782
DMEDAMI+NK++ +RG G IY+ E ++L+ G F RN +L+ +D+D
Sbjct: 759 DMEDAMIINKAAFERGFAAGNIYKHEYVELT--------GDSFFARNPKDATLNPFLDND 810
Query: 783 GLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYV-----------AVDMKNS 831
GLP+ G + G P +D +++ S +G E VD V +
Sbjct: 811 GLPFKGAQLTKGTPLYCYFDVNDHTYHVVSYQGYEEAIVDNVKLGAPLQDAGRGIGRGGM 870
Query: 832 KNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHA 891
+ ++ + +R RNP +GDKF+SR GQKG+CSQ WP ID+PF+ +GM PD+I NPH
Sbjct: 871 AIVTKQLILTYRVPRNPSVGDKFASRAGQKGICSQHWPAIDLPFTE-SGMIPDIIFNPHG 929
Query: 892 FPSRMTIAMLLESVAAK 908
FPSRMTIAM++E++A K
Sbjct: 930 FPSRMTIAMMIETMAGK 946
>gi|452825715|gb|EME32710.1| DNA-directed RNA polymerase subunit isoform 1 [Galdieria sulphuraria]
Length = 1206
Score = 572 bits (1474), Expect = e-160, Method: Compositional matrix adjust.
Identities = 349/903 (38%), Positives = 505/903 (55%), Gaps = 66/903 (7%)
Query: 37 HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
HCR+ + SY L + + +D R G+ PVM+++ CHL DS +L L
Sbjct: 162 HCRENQTSYKAPLFLTLRCK-IDGKVCHQLVRL-VGEIPVMVRSAVCHLSKMDSGELRKL 219
Query: 97 KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQ 156
EE E GGYFI NG+E+V R +I+ ++N+ M++ R S +R ++ + IRCVR DQ
Sbjct: 220 GEEEFETGGYFICNGVEKVLRMIIVSRRNHIMAIKRDSNSNRGPLFSSFSCYIRCVRPDQ 279
Query: 157 SSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALV-DTNDLEIFNHLTCCYDEKYKK 215
+S T L+YL +G+++ + +EY++PV ++ KAL+ + D I+ +
Sbjct: 280 TSKTFHLHYLTSGAIQARISISKQEYMIPVLLIFKALIPEITDRTIYEVIM--------- 330
Query: 216 EKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSE-SYYAVAETV 274
+G + +RV +L + T L ++G F+ + + + V
Sbjct: 331 -QGNENDIYLRDRVIAMLMDGLSKYEGTAGSELAYLGRTFRIALSIFDDQVTDEQVGRQF 389
Query: 275 IRDYIFVHL-------NDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHL 327
++ ++ +HL +DN K +L M++KL ++ + D+PDSL +QE+LLPGHL
Sbjct: 390 LKHFVLIHLSGDKYTDDDNVAKLEMLALMIRKLIAVARGSICPDSPDSLAHQEVLLPGHL 449
Query: 328 ITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLK 387
+YLKEK+ED+L + +I + N K +++ P IG +E +
Sbjct: 450 YMMYLKEKIEDYLLGIRSVILKDF-NMKKAIHLEEGPYFATCLQRCPI-DIGKRMEHFIA 507
Query: 388 TGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWG 447
TG+L T+TGLDL Q AGY+V AER+++ R+IS FR VHRG F+ L+TTSVRKLLPE+WG
Sbjct: 508 TGQLQTRTGLDLMQTAGYSVVAERISYYRYISHFRCVHRGQFFSELKTTSVRKLLPEAWG 567
Query: 448 FLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTS-ILRVLIGVGMIPSLP 506
FLCPVHTPDG PCGLLNH+ V+ +M T +L L+ GM S
Sbjct: 568 FLCPVHTPDGAPCGLLNHLAHPVIVSQS----------EEMATEPLLSWLVEHGMTLSNK 617
Query: 507 KLVKSGPPAV-LSVLLDGRVVGVIPSSEIEKVVAHLRRLKV-SAASVIPDDLEVGYVPLS 564
P A V+LDG+++G + + + +R LKV + +++P E+ V
Sbjct: 618 YSSLEMPNAWEYPVVLDGKILGYLSVDIMMNISQQMRILKVNNEMNILPKTAEIVTVVRQ 677
Query: 565 LGG--AYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRR 622
+PGL++FT P + +RPV L +S E IGP EQ F+ I P +
Sbjct: 678 TWNDRNFPGLFIFTGPARLLRPVW---LLLSKSPKQEYIGPLEQAFLRIANPKVVSLDWK 734
Query: 623 NA-------FPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALK 675
N PATHEEI LS+VA+LTP+SD NQSPRNMYQCQM+KQ++G +
Sbjct: 735 NMKKDESVFVPATHEEIDCLSFLSLVASLTPFSDMNQSPRNMYQCQMSKQSLGTPYHLFE 794
Query: 676 FRADQKLYHLQTPQTPIVRT-NTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSS 734
R+D K+Y L TPQ PIVR T + +D +P G NA+VAVL+YTGYDMEDAM++NK+S
Sbjct: 795 RRSDSKMYRLVTPQIPIVRNFPTQDSFEMDHFPNGFNAVVAVLSYTGYDMEDAMVINKAS 854
Query: 735 VDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPG 794
+DRG+ HG +Y T+ IDL RG K + S H I DGLP VG + G
Sbjct: 855 LDRGLAHGTMYSTQLIDLDQ-----MRGTK--SKYIGGGSQHETIGEDGLPEVGVRVFKG 907
Query: 795 EPYCSIYDKTTNSWRTNS------RKGSESVFVDYV---AVDMKNSKNLPQKANIRFRHT 845
+P I D+T S + + K ++ VD V V + S ++A+I+ R+
Sbjct: 908 DPLYCIADETVYSLASGTSEKVYFHKQADPAIVDQVRLIPVTSRASAEGIRRASIKLRYP 967
Query: 846 RNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESV 905
R P+IGDKF+SRHGQKGV S LWP DMPF+ G+ PD+I NP+ FPSRMTI M++ES+
Sbjct: 968 RIPVIGDKFASRHGQKGVLSALWPSEDMPFTE-NGIVPDIIFNPNGFPSRMTIGMMMESI 1026
Query: 906 AAK 908
K
Sbjct: 1027 CGK 1029
>gi|449269621|gb|EMC80379.1| DNA-directed RNA polymerase I subunit RPA2, partial [Columba livia]
Length = 1022
Score = 571 bits (1471), Expect = e-160, Method: Compositional matrix adjust.
Identities = 328/847 (38%), Positives = 479/847 (56%), Gaps = 50/847 (5%)
Query: 71 FGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSM 130
G P+M+K++ C+L Q+L+ EE EMGGYFI+NGLE+V R +I+P++N P++M
Sbjct: 18 LGYIPIMVKSKLCNLYNLSPQELIQHHEEEEEMGGYFIINGLEKVVRMLIMPRRNIPLAM 77
Query: 131 VRSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVL 190
R +++R G+T+ VV+ C++ + +++ + L+YL NG V + F Q + + LP+G L
Sbjct: 78 ERHKWKNRGPGFTEYGVVMHCIKDEHTAINMNLHYLENGCVMVNFIFQKELFFLPLGFAL 137
Query: 191 KALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQH 250
KALV+ D +I L KG G V ++ V D T+ L++
Sbjct: 138 KALVNFPDYQIVEELV----------KGKEGDTFYMNCVTEMMRAVVDAGCLTQENVLEY 187
Query: 251 IGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVS 310
+G+ F+ ++ + S A+ ++ I +HL + +KF LL M +KL++ +
Sbjct: 188 LGKSFRIKLNLPEWYSDEQAADFILNKCICIHLTNRTEKFYLLCMMTRKLYAFAKGECME 247
Query: 311 DNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVM 370
DNPDSL NQE+L PG L ++LKE+LE WL+ K +++ E + L +
Sbjct: 248 DNPDSLMNQEVLTPGQLFLMFLKERLESWLQSVKFVLEKRAEKADVSINADGLVKAFSL- 306
Query: 371 EKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASF 430
+ + E +L TG L ++TGL + Q +G V ++LNF+R++S FR +HRGA+F
Sbjct: 307 ----ATDLTKPFEYLLATGNLRSKTGLGMLQDSGLCVVGDKLNFIRYLSHFRCIHRGAAF 362
Query: 431 AGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRT 490
+ +RTT+VRKLLPESWGFLCPV TPDGEPCGL+NHMT+ C + + + M T
Sbjct: 363 SQMRTTTVRKLLPESWGFLCPVDTPDGEPCGLMNHMTAVCEI---------VTEMVPM-T 412
Query: 491 SILRVLIGVGMIPSLPKLVKSGPPA-VLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAA 549
I +L +G+ P + S P A VLLDG VVG + ++ LRR K++
Sbjct: 413 DIPPLLCSLGVTPI--NVTPSKPYAECYRVLLDGSVVGWVEWDLAPEIAETLRRFKITQE 470
Query: 550 SVIPDDLEVGYVPLSLGGA-YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVF 608
P EV +P++ + YPGL++FT+P + VRPVRN+ + E IG EQV
Sbjct: 471 KRFPARAEVVLIPMTGKPSLYPGLFIFTTPCRMVRPVRNLFYGRK-----EWIGTLEQVG 525
Query: 609 MEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYS-DHNQSPR---NMYQCQMAK 664
+ + R+ +H + P DH + + C K
Sbjct: 526 INLV-----RLLRQVLCVLSHVPLSSPDCSWAAKKWIPRKLDHLEKFKWETGRRTCYCRK 580
Query: 665 QTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDM 724
QTMGF V K R+D KLYHL TPQ+P+VR + Y YG+D YP GTN+IVAV++Y+GYDM
Sbjct: 581 QTMGFPVYNYKDRSDNKLYHLHTPQSPLVRPSMYDYYGMDSYPVGTNSIVAVISYSGYDM 640
Query: 725 EDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGL 784
EDAMI+NKSS RG +G + + E+IDLS ++ R D ++ + +D+DGL
Sbjct: 641 EDAMIVNKSSWQRGFAYGSVIKMESIDLSLKASRAGDNLVFGIRPGDL-NITAKLDADGL 699
Query: 785 PYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAV---DMKNSKNLPQKANIR 841
P+VG M+ PG+P+ S + T T E VD + + D K +KA I
Sbjct: 700 PFVGSMLQPGDPFYSFMNLNTGETFTVYYPNKEVGIVDNIRLCSNDRGTGKF--KKACIT 757
Query: 842 FRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAML 901
R RNP +GDKF+SRHGQKG+ SQLWP DMPF+ GM PD++ NPH FPSRMTI ML
Sbjct: 758 VRVPRNPTVGDKFASRHGQKGILSQLWPVEDMPFTE-NGMVPDILFNPHGFPSRMTIGML 816
Query: 902 LESVAAK 908
+ES+A K
Sbjct: 817 IESMAGK 823
>gi|242003016|ref|XP_002422580.1| DNA-directed RNA polymerase I 135 kDa polypeptide, putative
[Pediculus humanus corporis]
gi|212505370|gb|EEB09842.1| DNA-directed RNA polymerase I 135 kDa polypeptide, putative
[Pediculus humanus corporis]
Length = 1114
Score = 571 bits (1471), Expect = e-160, Method: Compositional matrix adjust.
Identities = 322/879 (36%), Positives = 500/879 (56%), Gaps = 62/879 (7%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CRQ +Y+G L + + + + +FG+ P+M+K+ RCHL+ ++LV
Sbjct: 106 CRQRASTYSGNLFGKITWSVNGVNQHPIEK--DFGKIPIMIKSNRCHLKNLTPRELVEKN 163
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
E E GGYFIL G E++ R +I ++NYP+++ R +++ R +++K +++RCV +D++
Sbjct: 164 EHEDEWGGYFILKGHEKLIRMLIATRRNYPIALSRRTWKQRGASFSEKGILLRCVSEDET 223
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
S L+++ +G+V++ Y +P+ ++LK+L++ +DL +F LT D+ +
Sbjct: 224 STNNVLHFVTDGTVKVMLSYGRSLYFIPLCLILKSLINVSDLYVFKRLTEGRDDDF---- 279
Query: 218 GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYY--AVAETVI 275
+K +L +V + T + IG+ F+ QS + + + ++
Sbjct: 280 ------YFKSCIKTMLYDVHVQGIDTHEEAKCFIGKTFRLKFPD-QSPWFTDAQICDLIM 332
Query: 276 RDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEK 335
+ +HLNDN DKFNLLIFM QKLF+ V +N DSL QEIL G + LK++
Sbjct: 333 EKCLAIHLNDNKDKFNLLIFMTQKLFAFVQGQCCEENADSLMVQEILTGGSIYQQVLKDR 392
Query: 336 LEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIG---TSIETMLKTGRLA 392
L+ +L +L+ + + GK L +I ++ + K+ G ++ + TG
Sbjct: 393 LQGFLNN-LRLVASKKLSEGK------LNSISQIQMASFCKRAGGIEKAMNNFVATGNCH 445
Query: 393 TQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPV 452
L Q G + AE +N +R++S F+A+HRGA F +RTT R+LLPE+WGF+CPV
Sbjct: 446 NSLS-GLPQDKGLVIMAENINRMRYMSHFKAIHRGAYFTTMRTTDGRQLLPEAWGFICPV 504
Query: 453 HTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSG 512
HTPDG PCGLLNH++ C V N+ D+ ++ ++ VL +G++P L + K
Sbjct: 505 HTPDGSPCGLLNHLSKDCIVT-------NVPDYEILK-NLSCVLTDLGVMP-LEIVEKKN 555
Query: 513 PPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGA-YPG 571
VLLDG+++G + + + +V LR LK+ +V+P+ LE+ VP + YPG
Sbjct: 556 --NYYDVLLDGKLIGYVADTNAQNLVQSLRVLKIEG-NVVPNTLEIVLVPKKDSESQYPG 612
Query: 572 LYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEI--RCPDGGDGGRRNAFPATH 629
++LFT P + +RPV N++L ELIG FEQV++EI + + +G TH
Sbjct: 613 IFLFTGPNRLMRPVLNLAL-----NKTELIGTFEQVYLEICLKLNEAYEG------LTTH 661
Query: 630 EEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQ 689
+E+ T LS +A L P D NQSPRNMYQCQM KQ+MG V +A+ KLY L P
Sbjct: 662 KELSHTTFLSNLACLIPMPDCNQSPRNMYQCQMGKQSMGTPVHTWDIQAETKLYRLLLPS 721
Query: 690 TPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTET 749
+P+ R Y +D++P G NA+VAV++YTGYDMEDAMI+NKSS +RG HG I ++E
Sbjct: 722 SPLFRPGHYDAIKLDDFPMGVNAVVAVISYTGYDMEDAMIINKSSFERGFGHGTILKSEF 781
Query: 750 IDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWR 809
L+ D F R+ L S +D DGLP+ G ++ +P C ++ + +
Sbjct: 782 FHLNPDS--------YFERDPSKAELISKLDDDGLPFPGTLVEENDPICCYFNGELSKYV 833
Query: 810 TNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWP 869
G E +VD V + + N I FR RNP++GDKF+SR GQKG+CSQ+WP
Sbjct: 834 VEKFHGKEIAYVDNVRLCCGETLN-SASVCITFRVPRNPVVGDKFASRAGQKGICSQMWP 892
Query: 870 DIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
D+PF+ +G+ PD++ NPH FPSRMTIAM++E +A K
Sbjct: 893 CEDLPFTD-SGLVPDVVFNPHGFPSRMTIAMMIELMAGK 930
>gi|189240038|ref|XP_972683.2| PREDICTED: similar to RNA polymerase I 135kD subunit CG4033-PA
[Tribolium castaneum]
Length = 993
Score = 567 bits (1461), Expect = e-158, Method: Compositional matrix adjust.
Identities = 319/840 (37%), Positives = 477/840 (56%), Gaps = 57/840 (6%)
Query: 77 MLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFR 136
M+K+ +CHL +LV E E GGYF++ G ER+ R +++ ++NYP+++ RS ++
Sbjct: 1 MIKSNKCHLSAMSPAELVKHGEHEQEWGGYFVVKGHERLVRMLLMTRRNYPIAIKRSGWK 60
Query: 137 DRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDT 196
R ++D + +RCVR+DQ++ T L+++ +G+ +L F + Y P+ ++LK L D
Sbjct: 61 ARGSIFSDCGISMRCVREDQTATTNVLHFVTDGTAKLMFSYKKVLYYTPLVLILKCLCDY 120
Query: 197 NDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQ 256
D I+ L +G + V+ +L + +L T C ++G+ F+
Sbjct: 121 CDQFIYQKLI----------QGYQHDSYYLDCVQNMLRNLHIENLHTHEDCKVYLGKMFR 170
Query: 257 ----PVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDN 312
D L +A+ +++ I +HL+ DKFN+L+FM QKLF V +
Sbjct: 171 VKFYECPDWLTDSE---IADFILKKCIMIHLDKPEDKFNMLVFMCQKLFVFVQDKCKPEG 227
Query: 313 PDSLQNQEILLPGHLITIYLKEKLEDWLRKGK-KLIQDEIENNGKKFDFFNLANIKKVME 371
D++ QE+LL GHL +KE+L+ WL K +++ G +L+ + +
Sbjct: 228 ADAVMMQELLLGGHLYLQLIKERLQGWLFGLKSNILKRSSTLTG------HLSQTEILQA 281
Query: 372 KNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFA 431
S + + E L TG + + +GL L Q G T+ AE +N +R++S F+AVHRGA F
Sbjct: 282 AKRSGGLENAFEMFLATGNITSSSGLGLMQDKGLTIVAENINRMRYMSHFKAVHRGAFFQ 341
Query: 432 GLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTS 491
+RTT VR+LLP++WGF+CPVHTPDG PCGLLNH+T+ C V D+R +
Sbjct: 342 EMRTTEVRQLLPDAWGFICPVHTPDGAPCGLLNHLTTNCSVTDVPDARK--------VEN 393
Query: 492 ILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASV 551
I +L +GM+ +L + G V+LDGRV+G + K+V LR K+ V
Sbjct: 394 IPIILTRLGMV-ALKYVASVGFDQNYVVVLDGRVLGYVRRDLAPKLVEQLRLCKIKGEEV 452
Query: 552 IPDDLEVGYVPL-SLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFME 610
P+ LE+ VPL + +PGLYLFT P + +RP+ N+ +++ +E +G FEQV+M+
Sbjct: 453 -PNTLEIVLVPLMKVTAQFPGLYLFTGPARMMRPLLNL-----KTKEVEFVGTFEQVYMD 506
Query: 611 IRC--PDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMG 668
I C PD G TH E+ LS +A L P D NQSPRNMYQCQM KQTMG
Sbjct: 507 I-CVSPDEYYKG-----VTTHMELSKLAFLSNLAQLIPMPDCNQSPRNMYQCQMGKQTMG 560
Query: 669 FSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAM 728
+ +++ KLY LQTP TP+ R Y +D++ GTNAIVAV++YTGYDMEDAM
Sbjct: 561 TPCHNWRSQSETKLYRLQTPATPLFRPVHYDNINLDDFAMGTNAIVAVISYTGYDMEDAM 620
Query: 729 ILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVG 788
I+NK++ +RG HG IY+TE + L + + F RN + L +D+DGLP +G
Sbjct: 621 IINKAADERGFAHGSIYKTEFVTLEHESS-------YFCRNPEKPELAEFLDTDGLPIIG 673
Query: 789 QMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNP 848
+ + G+P Y + ++ G E FVD V + + + + A FR RNP
Sbjct: 674 RRMKDGDPLYCYYSVDESVYKVTKFSGKEECFVDMVKL-CASFETTNRTACFTFRVPRNP 732
Query: 849 IIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
+GDKF+SR GQKG+CSQ WP D+PF+ TG+ PD++ NPH FPSRMTIAM++E +A K
Sbjct: 733 NVGDKFASRAGQKGICSQKWPMEDLPFTE-TGLVPDIVFNPHGFPSRMTIAMMIEVMAGK 791
>gi|440296696|gb|ELP89482.1| DNA-directed RNA polymerase I subunit RPA2, putative [Entamoeba
invadens IP1]
Length = 1100
Score = 565 bits (1456), Expect = e-158, Method: Compositional matrix adjust.
Identities = 336/940 (35%), Positives = 507/940 (53%), Gaps = 84/940 (8%)
Query: 12 LRELVRHHIESFDYMLDEGLSE-------------------------------MFD---- 36
L EL R H+ESFDY LDEG + MF+
Sbjct: 10 LLELTRAHVESFDYFLDEGKNAILKTIPPMHIIDPEKNEIMTVSIKTITIDKPMFNGKPL 69
Query: 37 ---HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGAD---S 90
CR A +SY G L + F + G V N G+ P+ML + C L G D
Sbjct: 70 YPFMCRTAGLSYLGAL--HIVFSVIQNGIENVFN-VNAGEIPMMLCSDNCWL-GTDFRTP 125
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
Q + ++E+ E+GGYFI++G+E+ R ++ K N+P+++ R S+ + +T V+IR
Sbjct: 126 QDRIDIREDPHEIGGYFIIHGVEKYLRMILYAKPNHPIAVARPSWEGKGAHFTKYGVMIR 185
Query: 151 CVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYD 210
C+R D +++T ++YL NG V + F + +E+ +P+ ++L+ +D EIF +T
Sbjct: 186 CMRNDITTLTNTMHYLDNGKVCVRFIYRKQEFFIPIILLLRVYTGMSDREIFELVTMGNK 245
Query: 211 EKYKKEKGAVGSPLVSERVKIILAEVQDL--SLTTRLQCLQHIGEHFQPVIDGLQSESYY 268
E S LV+ ++ E + +L T Q L IG+ F+ V+ +
Sbjct: 246 EN---------SNLVNAAELLVRRESGSILNTLNTTEQILAFIGQKFRVVMVTGAELTDA 296
Query: 269 AVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLI 328
+ ++ +++FVHL+ K +L IFMLQKLF+ V+ ++ D+ Q ILL GHL
Sbjct: 297 QAGKYILDEFVFVHLDSYAQKADLSIFMLQKLFAFVNGEIDEESVDTPMTQSILLAGHLY 356
Query: 329 TIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKT 388
K++L L + + ++ + N K+ +++E + + ++T + T
Sbjct: 357 QTVFKDELNSCLMRIRMMVLKDWHNERKRSKLTEKGVQSRIIESG-ANGLSKRMQTFIAT 415
Query: 389 GRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGF 448
G A DLQQ G+++ AERLN RF S F +VHRGA + ++TT++RKL+PESWGF
Sbjct: 416 GNFAPTGTNDLQQENGFSITAERLNHSRFSSHFVSVHRGAFYTTMKTTAIRKLVPESWGF 475
Query: 449 LCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKL 508
+CPVHTPDG PCGLLNH+ +CR+ N R + +R+ +GMI S
Sbjct: 476 MCPVHTPDGAPCGLLNHLACSCRI--------NARFHPLPDETTIRLCTQLGMISSQ--- 524
Query: 509 VKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGA 568
+ P + VL++G+V+G + +I V LR + + ++P+ LE+GY L
Sbjct: 525 FMTLPSIYIPVLMNGKVIGKVAPHDINAFVQKLRYERAMSNPMLPNTLEIGYCDGYLHDG 584
Query: 569 YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPAT 628
Y LYL P + VRP+R+ + IGP+EQVF++I+C + +G ++ +
Sbjct: 585 YHALYLNDMPGQMVRPIRH-----RLTGKTVYIGPYEQVFLDIKCGNAIEGMDKSEY--- 636
Query: 629 HEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTP 688
EEI LS++A P+ NQSPRNMYQCQMAKQTMGF + A K+R+D KL L P
Sbjct: 637 -EEISEMNSLSLLATTIPFCHMNQSPRNMYQCQMAKQTMGFPMMAYKYRSDSKLLLLHYP 695
Query: 689 QTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTE 748
Q + + +G +E PTGTNA+VAV++YTGYDMEDA+I+ K+S++RG HG Y+
Sbjct: 696 QRSLCQCTLMEPFGFNELPTGTNAVVAVISYTGYDMEDALIIKKTSIERGFGHGSQYKAY 755
Query: 749 TIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSW 808
IDL+ + ++ G N + +D DGLP G++ Y I DK T
Sbjct: 756 KIDLTKEQTQMISG-----LNPKGELYDEHLDFDGLPRPGEIFENSPIYSEI-DKITGVV 809
Query: 809 RTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLW 868
+T G + V + Q+A +R R+ R P+IGDKFSSRHGQKG S +
Sbjct: 810 KTKKLMGEKGYIESVTIVGNDKKEAGQQQAVVRVRYNRTPVIGDKFSSRHGQKGTLSVHY 869
Query: 869 PDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
+ DMPF+ +GM PD++INPHAFPSRMTI ML+ES+A+K
Sbjct: 870 AEKDMPFTE-SGMTPDILINPHAFPSRMTIGMLIESMASK 908
>gi|452825716|gb|EME32711.1| DNA-directed RNA polymerase subunit isoform 2 [Galdieria sulphuraria]
Length = 1221
Score = 562 bits (1448), Expect = e-157, Method: Compositional matrix adjust.
Identities = 349/918 (38%), Positives = 505/918 (55%), Gaps = 81/918 (8%)
Query: 37 HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
HCR+ + SY L + + +D R G+ PVM+++ CHL DS +L L
Sbjct: 162 HCRENQTSYKAPLFLTLRCK-IDGKVCHQLVRL-VGEIPVMVRSAVCHLSKMDSGELRKL 219
Query: 97 KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQ 156
EE E GGYFI NG+E+V R +I+ ++N+ M++ R S +R ++ + IRCVR DQ
Sbjct: 220 GEEEFETGGYFICNGVEKVLRMIIVSRRNHIMAIKRDSNSNRGPLFSSFSCYIRCVRPDQ 279
Query: 157 SSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALV-DTNDLEIFNHLTCCYDEKYKK 215
+S T L+YL +G+++ + +EY++PV ++ KAL+ + D I+ +
Sbjct: 280 TSKTFHLHYLTSGAIQARISISKQEYMIPVLLIFKALIPEITDRTIYEVIM--------- 330
Query: 216 EKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSE-SYYAVAETV 274
+G + +RV +L + T L ++G F+ + + + V
Sbjct: 331 -QGNENDIYLRDRVIAMLMDGLSKYEGTAGSELAYLGRTFRIALSIFDDQVTDEQVGRQF 389
Query: 275 IRDYIFVHL-------NDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHL 327
++ ++ +HL +DN K +L M++KL ++ + D+PDSL +QE+LLPGHL
Sbjct: 390 LKHFVLIHLSGDKYTDDDNVAKLEMLALMIRKLIAVARGSICPDSPDSLAHQEVLLPGHL 449
Query: 328 ITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLK 387
+YLKEK+ED+L + +I + N K +++ P IG +E +
Sbjct: 450 YMMYLKEKIEDYLLGIRSVILKDF-NMKKAIHLEEGPYFATCLQRCPI-DIGKRMEHFIA 507
Query: 388 TGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWG 447
TG+L T+TGLDL Q AGY+V AER+++ R+IS FR VHRG F+ L+TTSVRKLLPE+WG
Sbjct: 508 TGQLQTRTGLDLMQTAGYSVVAERISYYRYISHFRCVHRGQFFSELKTTSVRKLLPEAWG 567
Query: 448 FLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTS-ILRVLIGVGMIPSLP 506
FLCPVHTPDG PCGLLNH+ V+ +M T +L L+ GM S
Sbjct: 568 FLCPVHTPDGAPCGLLNHLAHPVIVSQS----------EEMATEPLLSWLVEHGMTLSNK 617
Query: 507 KLVKSGPPAV-LSVLLDGRVVGVIPSSEIEKVVAHLRRLKV-SAASVIPDDLEVGYVPLS 564
P A V+LDG+++G + + + +R LKV + +++P E+ V
Sbjct: 618 YSSLEMPNAWEYPVVLDGKILGYLSVDIMMNISQQMRILKVNNEMNILPKTAEIVTVVRQ 677
Query: 565 LGG--AYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRR 622
+PGL++FT P + +RPV L +S E IGP EQ F+ I P +
Sbjct: 678 TWNDRNFPGLFIFTGPARLLRPVW---LLLSKSPKQEYIGPLEQAFLRIANPKVVSLDWK 734
Query: 623 NA-------FPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALK 675
N PATHEEI LS+VA+LTP+SD NQSPRNMYQCQM+KQ++G +
Sbjct: 735 NMKKDESVFVPATHEEIDCLSFLSLVASLTPFSDMNQSPRNMYQCQMSKQSLGTPYHLFE 794
Query: 676 FRADQKLYHLQTPQT---------------PIVRT-NTYTKYGIDEYPTGTNAIVAVLAY 719
R+D K+Y L TPQ PIVR T + +D +P G NA+VAVL+Y
Sbjct: 795 RRSDSKMYRLVTPQVSFSFHVWTSFDIFQIPIVRNFPTQDSFEMDHFPNGFNAVVAVLSY 854
Query: 720 TGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVI 779
TGYDMEDAM++NK+S+DRG+ HG +Y T+ IDL RG K + S H I
Sbjct: 855 TGYDMEDAMVINKASLDRGLAHGTMYSTQLIDLDQ-----MRGTK--SKYIGGGSQHETI 907
Query: 780 DSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNS------RKGSESVFVDYV---AVDMKN 830
DGLP VG + G+P I D+T S + + K ++ VD V V +
Sbjct: 908 GEDGLPEVGVRVFKGDPLYCIADETVYSLASGTSEKVYFHKQADPAIVDQVRLIPVTSRA 967
Query: 831 SKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPH 890
S ++A+I+ R+ R P+IGDKF+SRHGQKGV S LWP DMPF+ G+ PD+I NP+
Sbjct: 968 SAEGIRRASIKLRYPRIPVIGDKFASRHGQKGVLSALWPSEDMPFTE-NGIVPDIIFNPN 1026
Query: 891 AFPSRMTIAMLLESVAAK 908
FPSRMTI M++ES+ K
Sbjct: 1027 GFPSRMTIGMMMESICGK 1044
>gi|207340417|gb|EDZ68774.1| YPR010Cp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 835
Score = 558 bits (1438), Expect = e-156, Method: Compositional matrix adjust.
Identities = 296/626 (47%), Positives = 405/626 (64%), Gaps = 29/626 (4%)
Query: 288 DKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLI 347
DKF +L+FM++KL+SLV DNPD+ Q+QE+LL G L + LKEK++++L+ +
Sbjct: 1 DKFRMLLFMIRKLYSLVAGECSPDNPDATQHQEVLLGGFLYGMILKEKIDEYLQNIIAQV 60
Query: 348 QDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTV 407
+ +I N G +F + + +V+ + ++ IG+ ++ L T L +Q+GLDLQQ +GYTV
Sbjct: 61 RMDI-NRGMAINFKDKRYMSRVLMR-VNENIGSKMQYFLSTANLVSQSGLDLQQVSGYTV 118
Query: 408 QAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMT 467
AE++NF RFIS FR VHRG+ FA L+TT+VRKLLPESWGFLCPVHTPDG PCGLLNH
Sbjct: 119 VAEKINFYRFISHFRMVHRGSFFAQLKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHFA 178
Query: 468 STCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVG 527
CR+++ D S+ I +L +G+ P+ P++ V +DG+++G
Sbjct: 179 HKCRIST------QQSDVSR----IPSILYSLGVAPASHTFAAG--PSLCCVQIDGKIIG 226
Query: 528 VIPSSEIEKVVAHLRRLKVSAASV-IPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVR 586
+ + + + LR KV + +P DLE+GYVP S G YPGLYLF + +RPVR
Sbjct: 227 WVSHEQGKIIADTLRYWKVEGKTPGLPIDLEIGYVPPSTRGQYPGLYLFGGHSRMLRPVR 286
Query: 587 NISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTP 646
+ L E+ ++GPFEQV+M I + N TH E PT +LS++ANLTP
Sbjct: 287 YLPLDKED-----IVGPFEQVYMNIAVTP--QEIQNNVH--THVEFTPTNILSILANLTP 337
Query: 647 YSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEY 706
+SD NQSPRNMYQCQM KQTMG AL R+D KLY LQT QTPIV+ N Y YG+D +
Sbjct: 338 FSDFNQSPRNMYQCQMGKQTMGTPGVALCHRSDNKLYRLQTGQTPIVKANLYDDYGMDNF 397
Query: 707 PTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLF 766
P G NA+VAV++YTGYDM+DAMI+NKS+ +RG +G +Y+TE +DL+ + N+ D + F
Sbjct: 398 PNGFNAVVAVISYTGYDMDDAMIINKSADERGFGYGTMYKTEKVDLALNRNRGDPITQHF 457
Query: 767 RRNKDA--KSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYV 824
D K +D DGLPY+G + G+P C+ +D T N + + SE +++ V
Sbjct: 458 GFGNDEWPKEWLEKLDEDGLPYIGTYVEEGDPICAYFDDTLNKTKIKTYHSSEPAYIEEV 517
Query: 825 AV--DMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMR 882
+ D N Q +I++R R P IGDKFSSRHGQKGVCS+ WP IDMPFS TG++
Sbjct: 518 NLIGDESNKFQELQTVSIKYRIRRTPQIGDKFSSRHGQKGVCSRKWPTIDMPFS-ETGIQ 576
Query: 883 PDLIINPHAFPSRMTIAMLLESVAAK 908
PD+IINPHAFPSRMTI M +ES+A K
Sbjct: 577 PDIIINPHAFPSRMTIGMFVESLAGK 602
>gi|402467026|gb|EJW02400.1| hypothetical protein EDEG_03169 [Edhazardia aedis USNM 41457]
Length = 1197
Score = 555 bits (1430), Expect = e-155, Method: Compositional matrix adjust.
Identities = 339/963 (35%), Positives = 505/963 (52%), Gaps = 158/963 (16%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLV-SL 96
CR ISY GKL ++ D + + +FG PVM+K+++CHL G ++
Sbjct: 73 CRIRGISYKGKLSGRLKCTINDNQAFEISR--SFGNLPVMVKSKKCHLHGKSGAEIAKEF 130
Query: 97 KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQ 156
E+ E+GGYFI NG E+ R ++ PK+NY ++R S + +T+ AV RCV +D+
Sbjct: 131 GEDPREIGGYFIYNGNEKCVRLLVAPKRNYLFGIIRESNAKKGTNFTEYAVTARCVGEDE 190
Query: 157 SSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFN------------- 203
+ + +YL++G++ + + K + +PV ++LK+L++ D EIF+
Sbjct: 191 TGTMMAFHYLIDGNICIRLYYMQKAFYIPVMLLLKSLMEVTDKEIFDAIIGEDLRFSATP 250
Query: 204 -HLTCCYDEKY-KKEKGAVGSPLVSE----------------------------RVKIIL 233
L+ +E + + E+ GS VSE RV+ ++
Sbjct: 251 RSLSGSEEEDFDRSEQEEDGSIDVSEVKNNGKIKGNKTQSKNLSPDRFHTMDVKRVQNLI 310
Query: 234 AEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLL 293
D++L ++ +C+ +IG F+ +++ + A E VI +I +HLN DKFN L
Sbjct: 311 LSFNDMNLNSQQECINYIGARFKTIVNEREYSDQEAFTE-VINRFIAIHLNKKEDKFNFL 369
Query: 294 IFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIEN 353
I ++KL+ LV++ + DNPD QE+ + LKEK+ + LR K ++ E
Sbjct: 370 IVGIRKLYKLVNN-KIPDNPDLQSTQELFTTCQIFATLLKEKMYEVLRMLKPVLSREKR- 427
Query: 354 NGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLN 413
F++ + K ++K + IG IE ++ TG + + D ++AG T AER+N
Sbjct: 428 -------FSVDVVTKAIKK-ANMDIGVKIEHLITTGNASIKMSSDFTEKAGNTTLAERIN 479
Query: 414 FLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVA 473
F R++S FR+V+RG FA L+TT++RKL PESWGF CPVHTPDG PCG++ H+ T +V
Sbjct: 480 FFRYLSHFRSVNRGNFFAQLKTTTIRKLRPESWGFYCPVHTPDGSPCGIITHLAHTTKVI 539
Query: 474 S---YYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIP 530
S ++D + L +G+IP L +K + + V LDGR++G +
Sbjct: 540 SQPTFFDEK---------------FLFDLGVIPLLRGCIKK--QSFIEVFLDGRLMGYVD 582
Query: 531 SSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSL--GGAYPGLYLFTSPPKFVRPVRNI 588
V LR+ + +E+ +VP AYPG+++F S + +RPV N
Sbjct: 583 DFFSVDFVNKLRKHRADFKLT----MEIVFVPHDSHEKSAYPGIFIFNSRGRLMRPVLN- 637
Query: 589 SLPSEESQNIELIGPFEQVFMEIR------------------------CPDGGDG----- 619
S +E IG EQVF+ I+ C + D
Sbjct: 638 -----SSDQVEFIGIMEQVFLHIKSAQKNSIIKDYTNSLAEKNLEKQSCANSTDNIDKLL 692
Query: 620 -------------GRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQT 666
+ N +++E T LS+VAN TP+SD NQSPRNMYQCQMAKQT
Sbjct: 693 TENNFQININNTIKQSNTLCNSYKETESTDFLSIVANFTPFSDFNQSPRNMYQCQMAKQT 752
Query: 667 MGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMED 726
MG S K R++ K Y L PQ+P++ T Y Y +D YP G NAIVAVL+YT YDMED
Sbjct: 753 MGTSHHNYKSRSENKSYRLIGPQSPLISTKIYKYYKMDNYPMGINAIVAVLSYTAYDMED 812
Query: 727 AMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPY 786
AM++NKSS++RG HG +Y+TE +DL NK +R ID +P
Sbjct: 813 AMVINKSSIERGFFHGTVYKTERVDLQ---NKKER----------------FID---MPN 850
Query: 787 VGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAV-DMKNSKNLPQKANIRFRHT 845
+G + + + + Y K + + +GSES VD V V + K+++ L +R +
Sbjct: 851 IGDKLSLNDKFYT-YLKENGETKIITYQGSESGIVDTVRVFNSKDNEGLSMSVTLRIQ-- 907
Query: 846 RNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESV 905
RNP IGDKF SRHGQKGVCS WP +DMPF+ G+ PD+IINPHAFPSRMTI ML+ES+
Sbjct: 908 RNPNIGDKFCSRHGQKGVCSMHWPLVDMPFTE-DGIVPDIIINPHAFPSRMTIGMLIESM 966
Query: 906 AAK 908
A K
Sbjct: 967 AGK 969
>gi|357622980|gb|EHJ74315.1| hypothetical protein KGM_02320 [Danaus plexippus]
Length = 1130
Score = 555 bits (1429), Expect = e-155, Method: Compositional matrix adjust.
Identities = 340/939 (36%), Positives = 494/939 (52%), Gaps = 96/939 (10%)
Query: 19 HIESFDYMLDEGLSEMFD------------------------------------------ 36
HI+SF+YM+ +GL D
Sbjct: 38 HIDSFNYMIKDGLKAAIDDLIPVEFDVPSGERIKITIDEAAFAKPSVPMEAVGVKNQIVL 97
Query: 37 --HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLV 94
CRQ +Y G V + G + +R + G P+MLK++ CHL ++LV
Sbjct: 98 PTECRQRAATYKGDF--KVRLSFTVDGKTISMDR-SLGSLPIMLKSKVCHLADLSPEELV 154
Query: 95 SLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRK 154
E A E GGYFI+ G ER+ R +++ ++NYP+++ RS +R R +TD V++RCV+
Sbjct: 155 KKNEHADEWGGYFIIKGHERLARMLLVTRRNYPVAIKRSGWRMRGNLFTDYGVLMRCVKP 214
Query: 155 DQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYK 214
DQ+S L++L NG+ +L F + Y P+ ++LK LVD D I+ L
Sbjct: 215 DQTSTNNVLHFLQNGTCKLMFSHRKVMYYAPLVLILKCLVDWPDHYIYRLLL-------- 266
Query: 215 KEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETV 274
G V+ +L E+ + L T ++C ++G F+ +D + A +
Sbjct: 267 --HGKKNDLYYVNCVQNMLRELHEQDLHTSVECRSYMGRMFRARLDLPPDATDLDAANFL 324
Query: 275 IRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKE 334
+ I +HLND DKF L+FM QKLF LV + + D++ QE+ + GHL LKE
Sbjct: 325 LVRCIMIHLNDYKDKFYGLVFMNQKLFDLVQNKCKVEGADAVMVQELQVGGHLYLQVLKE 384
Query: 335 KLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEK--NPSKQIGTSIETMLKTGRLA 392
+L+ L K N KK L+ K +++ + + +ET L TG A
Sbjct: 385 RLQTLLYVLKA-------NIIKKSKTSRLSLTSKELQQIIRSAGGLEQKMETFLATGN-A 436
Query: 393 TQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPV 452
++L Q G T+ AE LN +R++S F+A+HRG+ F +RTT R+LLP++WGF+CPV
Sbjct: 437 PSNNVNLAQYKGLTIVAENLNRMRYMSHFKAIHRGSFFMEMRTTEARQLLPDAWGFVCPV 496
Query: 453 HTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIP--SLPKLVK 510
HTPDG PCGLLNH+T++ +V D K +S+ VL GM P S+
Sbjct: 497 HTPDGAPCGLLNHLTASAQVTQQPDP--------KQVSSLPAVLEKCGMDPISSVAHTPL 548
Query: 511 SGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPL-SLGGAY 569
+ V +DGR+VG K V++LR LKV V P E+ VP + Y
Sbjct: 549 THDVYKYPVFIDGRLVGYFNEDTALKSVSYLRTLKVKGEDV-PISTEIVMVPKKQIPAQY 607
Query: 570 PGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATH 629
G++LFTS + +RPV N+S + +EL+G EQ++++I + TH
Sbjct: 608 AGVFLFTSEARMMRPVINLS-----TGQLELVGTMEQLYLDIAVAQTEIIKGKT----TH 658
Query: 630 EEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQ 689
E+ + +S +A L P D NQSPRNMYQCQM KQTMG + A+ KLY LQT
Sbjct: 659 LELSKSAFMSNLAQLVPMPDCNQSPRNMYQCQMGKQTMGTPIHTWSTNAETKLYRLQTGA 718
Query: 690 TPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTET 749
TP+ R + +D+YP+GTNAI+AV++YTGYDMEDAMI+NKSS +RG G +Y++
Sbjct: 719 TPLFRPVHHDNLSLDDYPSGTNAILAVISYTGYDMEDAMIINKSSYERGFAAGSVYKSNF 778
Query: 750 IDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWR 809
+L + F R+ L + +D DGLP VG I P +P+ YD ++ +
Sbjct: 779 AELKSSSS-------YFCRDPTRTDLAAYMDEDGLPAVGARIQPEDPFYCHYDSDSSKFV 831
Query: 810 TNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWP 869
G E V VD V + + S P+KA I R RNP +GDKF+SR GQKG+CSQ WP
Sbjct: 832 VTKYHGKEEVVVDSVRLCGEFSSKAPKKACIMVRVQRNPTVGDKFASRAGQKGICSQKWP 891
Query: 870 DIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
D+PF+ +G+ PD++ NPH FPSRMTIAM++E +A K
Sbjct: 892 AEDLPFTE-SGLIPDVLFNPHGFPSRMTIAMMIECMAGK 929
>gi|307168561|gb|EFN61619.1| DNA-directed RNA polymerase I subunit RPA2 [Camponotus floridanus]
Length = 1075
Score = 550 bits (1416), Expect = e-153, Method: Compositional matrix adjust.
Identities = 326/877 (37%), Positives = 480/877 (54%), Gaps = 105/877 (11%)
Query: 39 RQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKE 98
RQ +Y GK++ V+ ++ G + G P+MLK+ RCHL ++LV+ E
Sbjct: 100 RQRGTTYKGKII--VKLKWSINGKEQEALESDLGGIPIMLKSNRCHLNKMSPKELVAHGE 157
Query: 99 EAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSS 158
E GGYFI+ G+ER+ R +I+ ++NYP+++ R ++ R E ++D
Sbjct: 158 HEQEWGGYFIVRGIERLIRMLIMTRRNYPIAIKRPIWKTRGEQFSD-------------- 203
Query: 159 VTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTC-CYDEKYKKEK 217
+D D+ I+ L C D+ Y
Sbjct: 204 -----------------------------------LDVTDVYIYKTLIAGCEDDHY---- 224
Query: 218 GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESY-YAVAETVIR 276
+ V +L + + L QC ++G+ F+ L +++ V +I+
Sbjct: 225 -------YNNSVMNMLRNLHEEGLHWHEQCKAYVGKIFKVKFSELPADATDIDVCNYIIK 277
Query: 277 DYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKL 336
+ +HL++ DKF+LL+FM +KLF+L + + DS+ QE LL GHL LKEKL
Sbjct: 278 YCVAIHLDEPIDKFHLLVFMTKKLFTLAGNKCAVEGVDSVMMQECLLGGHLYLQVLKEKL 337
Query: 337 EDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTG 396
WL K I ++ G K+ L + K+ + I +E L TG + + +
Sbjct: 338 WSWLTNVKIHILKLAKSAGNKY-ILTLQEMLKITKFR--SNIDAQMEYFLATGSIRSSSS 394
Query: 397 LDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPD 456
+ L Q +G TV E +N +R++S FRA+HRGA F G+RTT VR+LLP++WGF+CP+HTPD
Sbjct: 395 IGLMQNSGLTVVVENINRMRYMSHFRAIHRGAFFQGMRTTEVRRLLPDAWGFICPIHTPD 454
Query: 457 GEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAV 516
G PCGLLNH+T C V + D ++ +I +LI +GMIP +
Sbjct: 455 GAPCGLLNHLTMNCIVTKHPDP--------NLKAAIPGILIELGMIPLS---IADNWENS 503
Query: 517 LSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVP-LSLGGAYPGLYLF 575
+V+LDG+V+G+I + I KVV LR LK+ IP LE+ VP + YPGL+LF
Sbjct: 504 YTVMLDGKVIGLIENKIINKVVYRLRLLKIKGQE-IPSTLEIALVPKRKVPSQYPGLFLF 562
Query: 576 TSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC--PDGGDGGRRNAFPA--THEE 631
T+ + +RPV N+++ Q IELIG FEQ++M+I C P+ A+P TH+E
Sbjct: 563 TNATRMMRPVINLAV-----QQIELIGTFEQIYMDI-CVLPE-------EAYPGLTTHQE 609
Query: 632 IHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTP 691
+ T + S +A L P D NQSPRNMYQCQM KQTMG + ++ KLY LQTP P
Sbjct: 610 VSQTTIFSNLAKLIPLPDCNQSPRNMYQCQMGKQTMGTPCYNWQQQSQTKLYRLQTPAAP 669
Query: 692 IVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETID 751
+ R Y +D+Y GTNAI+AV++YTGYDMEDAM++NK+S +RG +G +Y++E +D
Sbjct: 670 LFRPVHYDNINMDDYAMGTNAIIAVISYTGYDMEDAMVINKASYERGFGYGTVYKSEFVD 729
Query: 752 LSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTN 811
L D + F + D L +D DGLP +G I G+PY YD ++
Sbjct: 730 LKDK-------KSYFACDPDKPELGKTLDIDGLPIIGASIKEGDPYYCFYDADNANYVVG 782
Query: 812 SRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDI 871
K +E+ ++D V + + P++A I FR RNPI+GDKF+SR GQKG+ S+L+P
Sbjct: 783 RYKSTENTYIDNVKLCGSFNTQDPRRACITFRIPRNPIVGDKFASRAGQKGILSRLYPAE 842
Query: 872 DMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
D+PF+ TGM PD+I NPH FPSRMTIAM++E +A K
Sbjct: 843 DLPFTE-TGMVPDIIFNPHGFPSRMTIAMMIEVMAGK 878
>gi|256077165|ref|XP_002574878.1| DNA-directed RNA polymerase I subunit [Schistosoma mansoni]
gi|353230762|emb|CCD77179.1| putative dna-directed RNA polymerase I subunit [Schistosoma
mansoni]
Length = 1155
Score = 548 bits (1413), Expect = e-153, Method: Compositional matrix adjust.
Identities = 347/965 (35%), Positives = 513/965 (53%), Gaps = 103/965 (10%)
Query: 12 LRELVRHHIESFDYMLDEGLSEMFDH---------------------------------- 37
+ +L R H SFD+ + EGLS + H
Sbjct: 1 MEKLSRVHTGSFDFFVKEGLSRLVKHLQPLEFNSGSDVVEFKIQFIEVAPPVDSDNRSTL 60
Query: 38 -----CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQK 92
CR++ ++Y G+L V GSP+ G P+M+ +R C+L +
Sbjct: 61 LYPSECRRSGLTYGGELKLSVRVSV--NGSPLGVLDVPCGVLPIMVMSRACNLSSLPRSQ 118
Query: 93 LVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCV 152
EE E+GGYFI++G ERV R +I+ ++NYP+++ RS+F+ R GYT+ A+V+RCV
Sbjct: 119 FYLHGEEFKEIGGYFIVHGKERVLRLLIMSRRNYPLAISRSTFKKRGHGYTEHAIVMRCV 178
Query: 153 RKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEK 212
R+D++ L L++L+NG L F ++ +++L+P+ I+L+ + N TC
Sbjct: 179 REDETVSILMLHWLVNGEPALAFIVEREQFLVPISIILRVSFKSLYKTFGNVRTCNISFL 238
Query: 213 YKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAE 272
+ K IL ++D +++ + L ++G F+ ++ S +
Sbjct: 239 FLK--------FHIRNAMRILIRLKDDEYSSQTRALCYLGGLFRKRMNVPDRLSDEEAGK 290
Query: 273 TVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYL 332
++ +YI +HL+ DK++LL FM++KL + V ++ D+ QE+LLP L L
Sbjct: 291 FLLSEYIAIHLSSFLDKYHLLCFMIKKLHAFVSGLCCEESNDNPMFQEVLLPSTLYLQVL 350
Query: 333 KEKLEDWLRKGKK--LIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGR 390
+ K+ L K+ L++ +N F+ A + + E + T++ M+ TG
Sbjct: 351 RAKVLHLLANVKEQVLLKSRKQNVRISLSLFHQALLSRASE------VSTAMVYMVSTGN 404
Query: 391 L--ATQTGLDLQ---QRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPES 445
L + ++ L Q Q G +V A+ +NFLRF + FRAVHRGA F +RTTSVR+LLPE+
Sbjct: 405 LPPSCKSTLSAQLSGQSTGLSVPADNVNFLRFAAQFRAVHRGAFFTEMRTTSVRRLLPEA 464
Query: 446 WGFLCPVHTPDGEPCGLLNHMT----STCRV--ASYYDSRGNIRDFSKMR-TSILRVLIG 498
WGF CPVHTPDG PCGLLNH+ + C S ++ GN K+R + R L G
Sbjct: 465 WGFFCPVHTPDGAPCGLLNHLAEPVEAVCETPKQSVLENIGNWLSTHKLRPIELSRQLFG 524
Query: 499 VGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPS-SEIEKVVAHLRRLKVSA-ASVIPDDL 556
V + L VLLDGR++G + + E +++ LR KV IP +
Sbjct: 525 V-----------AEQQNALPVLLDGRLIGWLSTLDEAKRLALELRNSKVDPNCKNIPHTM 573
Query: 557 EVGYVPLS-LGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN--IELIGPFEQVFMEIRC 613
E+ VP + +G YPGLYLF + +RPV+N+ P + IE IG FEQV++ I
Sbjct: 574 EITLVPSTDVGSQYPGLYLFAGGSRLLRPVKNLQCPKNSAGKDVIEWIGTFEQVYLNISV 633
Query: 614 PDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQA 673
+ + R+ +H EI P + S VA L PY D NQSPRNMYQCQMAKQTMG S
Sbjct: 634 KEE-ELSERSPIDRSHIEIAPENIFSFVAGLIPYPDFNQSPRNMYQCQMAKQTMGHSCYT 692
Query: 674 LKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKS 733
+ R+D K Y L TPQ+P+VRT Y KY +D YP G NAIVAV++YTGYDMEDAM++NK+
Sbjct: 693 WRNRSDAKAYRLFTPQSPLVRTKMYVKYDVDHYPLGFNAIVAVMSYTGYDMEDAMVINKA 752
Query: 734 SVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSV-------IDSDGLPY 786
S DRG+ IY++E IDLS F++ + S + +D DG P
Sbjct: 753 SYDRGLAGACIYKSEVIDLSSLSKSTSSNNP-FQKKRLVTSEYYFGEKPDKGLDLDGFPP 811
Query: 787 VGQMIHPGEPYCSIYDKTTNSWRTNSRK---GSESVFVDYVAVDMKNSKNLPQKANIRFR 843
VG + PG + Y + + +TN K G + +VD ++++ S A I R
Sbjct: 812 VGARLEPGVSWLYAYTH-SETLQTNFIKYEGGEQIAYVDSISLNGSWS-----CATITLR 865
Query: 844 HTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLE 903
R P IGDK+SSRHGQKG+ S L +MP+S G+ PDLI NPH FP+RMT+ M++E
Sbjct: 866 LPRQPDIGDKYSSRHGQKGINSLLIQCEEMPWSTTNGLIPDLIFNPHGFPTRMTMGMMIE 925
Query: 904 SVAAK 908
+A K
Sbjct: 926 FLAGK 930
>gi|149234772|ref|XP_001523265.1| DNA-directed RNA polymerase I 135 kDa polypeptide [Lodderomyces
elongisporus NRRL YB-4239]
gi|146453054|gb|EDK47310.1| DNA-directed RNA polymerase I 135 kDa polypeptide [Lodderomyces
elongisporus NRRL YB-4239]
Length = 817
Score = 545 bits (1405), Expect = e-152, Method: Compositional matrix adjust.
Identities = 288/621 (46%), Positives = 401/621 (64%), Gaps = 30/621 (4%)
Query: 292 LLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEI 351
+L+FM++KL+SLV DNPD+ Q+QE+LL G L + +KEK++++L+ K +Q ++
Sbjct: 1 MLLFMIRKLYSLVARDCAPDNPDATQHQEVLLGGFLYGMIIKEKIDEYLQNFKLQVQSDL 60
Query: 352 ENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAER 411
N G +F N + +V + ++ IG ++ L TG L +Q+GLDLQQ +GYTV AE+
Sbjct: 61 -NRGVGVNFENQKYMTRVFSR-INENIGQKLQYFLSTGNLVSQSGLDLQQVSGYTVVAEK 118
Query: 412 LNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCR 471
+NF RFIS FR VHRGA FA L+TT+VRKLLPESWGFLCPVHTPDG PCGLLNH++ C
Sbjct: 119 INFHRFISHFRMVHRGAFFAELKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHLSHKCV 178
Query: 472 VASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPS 531
+A+ D S++ ++ + +GV LP + P + V LDG++VG
Sbjct: 179 IAT------TASDVSQVPKALTQ--LGV-----LPANAYAAGPDLCVVQLDGKIVGWTTH 225
Query: 532 SEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLP 591
+ + + LR KV + +P DLE+GYVP S+ G YPGLY+F + +RPV+ + L
Sbjct: 226 EQGKIIADTLRFWKVEGSHGLPLDLEIGYVPPSVNGQYPGLYIFGGHSRMMRPVKYLPLG 285
Query: 592 SEESQNIELIGPFEQVFMEIRC-PDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDH 650
E+ ++GPFEQV+M + P+ + +H E PT +LS++ANLTP+SD
Sbjct: 286 KED-----IVGPFEQVYMNVAVTPEEIENNVH-----SHVEFSPTNILSILANLTPFSDF 335
Query: 651 NQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGT 710
NQSPRNMYQCQM KQTMG AL R+D KLY LQT QTPIV+ N Y +YG+D +P G
Sbjct: 336 NQSPRNMYQCQMGKQTMGTPGTALVHRSDNKLYRLQTGQTPIVKANLYDEYGMDNFPNGM 395
Query: 711 NAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNK 770
NAIVAV++YTGYDM+DAMI+NKSS +RG +G +Y+ E +DL K D + F
Sbjct: 396 NAIVAVISYTGYDMDDAMIINKSSDERGFGYGTVYKVEKVDLGQSRRKGDPISQHFGFGD 455
Query: 771 DA--KSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDM 828
D ++ +D DGLP +G + G+P + +D T + + SE +++ V +
Sbjct: 456 DEWPETWKEKLDDDGLPLIGVKVEEGDPIVAYFDDTLGKTKVKTYHSSEPAYIEEVKLLG 515
Query: 829 KNSKNL-PQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLII 887
++ + Q+ I++R TR P IGDKFSSRHGQKGV S+ WP IDMPF+ +GM+PD+II
Sbjct: 516 DDAGDKEAQQITIKYRITRQPQIGDKFSSRHGQKGVLSRKWPQIDMPFT-ESGMQPDVII 574
Query: 888 NPHAFPSRMTIAMLLESVAAK 908
NPHAFPSRMTI M +ES+A K
Sbjct: 575 NPHAFPSRMTIGMFVESLAGK 595
>gi|323448349|gb|EGB04249.1| hypothetical protein AURANDRAFT_55255 [Aureococcus anophagefferens]
Length = 1148
Score = 540 bits (1391), Expect = e-150, Method: Compositional matrix adjust.
Identities = 341/918 (37%), Positives = 507/918 (55%), Gaps = 98/918 (10%)
Query: 39 RQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKE 98
R+ K++Y+ + DV F+ G V + G P+M+ + RCHL G L+S +E
Sbjct: 78 RECKVTYSAPM--DVTFECCVDGRTVEIFTRSIGHLPIMVLSHRCHLWGLKKNGLISSRE 135
Query: 99 EAAEMGGYFILNGLERVFRSV-ILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
E E GGYFI+NGLE++ R + ++P +N +++ R ++R+R +T+ AV++RC R DQS
Sbjct: 136 EDFEYGGYFIVNGLEKILRLLQVVPMRNMALAIKRPAYRNRGTFFTEYAVMMRCARPDQS 195
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
+ T+ L+YL NG++RL ++ +E ++P+ I+LKAL + Y +
Sbjct: 196 TCTITLHYLSNGTLRLRVSIRKQEMMIPLCIILKALQPGISDRVV------YAQIIGDSG 249
Query: 218 GAV---GSPLVSERVK-IILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESY--YAVA 271
GA+ G+P V ++ +A + + + + +G F G E V
Sbjct: 250 GAINALGAPQVERMLRDHAMAPYFEENDHSSKSAISILGSMFLNFFFGYFPEGTDNATVG 309
Query: 272 ETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIY 331
+ IR +I VH++D K ++L+ M +KL + DN DSL QE+LLPGHL++ +
Sbjct: 310 QFFIRRFIAVHVDDFLSKHDVLVLMARKLCCFARNECCEDNIDSLGYQELLLPGHLLSAF 369
Query: 332 LKEKLEDWLRKGKKLIQDE----IENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLK 387
+ EKL + L + +Q E ++ K + LA K + + S I + ++L
Sbjct: 370 VTEKLGESLTQAASHVQREARIDFDDIASKLRYEPLAYCGKTIGRY-SGIICDKVSSLLA 428
Query: 388 TGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWG 447
+G L + +GLDLQQ G+ + AERLN R+ S FR+VHRG F ++TT+VRKLLPE+WG
Sbjct: 429 SGNLVSSSGLDLQQTTGFAIVAERLNKWRYFSHFRSVHRGQFFTTMKTTAVRKLLPEAWG 488
Query: 448 FLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGN-IRDFSKMRTSILRVLIGVGMIPSLP 506
FLCPVHTPDG PCGLL+H+T+ + SR N I S++ L +++ +GM P+
Sbjct: 489 FLCPVHTPDGGPCGLLSHLTARAHIIC---SRSNSIHAHSRL----LDIIVSLGMAPNHT 541
Query: 507 K--------LVKSGP---PAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDD 555
LV S + L++ LDG ++G P K+ LRRLK ++A + D
Sbjct: 542 SSCGIDCTFLVLSRQRICDSTLNICLDGVLLGSAPCLVCAKISDALRRLKANSAFRLGLD 601
Query: 556 --LEVGYV---PLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFME 610
LE+ ++ P + +PGLYLF+ + VRPV S+ IELIGPFEQ+ ++
Sbjct: 602 PTLEIAFIDQGPTN-SSPFPGLYLFSQAARCVRPVIQCGTESK----IELIGPFEQMTLQ 656
Query: 611 IRC------PDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAK 664
I C GD A TH EI P+ MLSV+A+LTP+SD N
Sbjct: 657 IACNFRGLKSGVGDTSPSGASAETHAEIDPSNMLSVLASLTPFSDFN------------- 703
Query: 665 QTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDM 724
KLY + TPQ P+V T+ YT + Y GTN++VAV++YTGYDM
Sbjct: 704 ---------------HKLYRILTPQAPLVCTHDYTTSNFNLYAQGTNSVVAVISYTGYDM 748
Query: 725 EDAMILNKSSVDRGMCHGQIYQTETIDLSDDGN-KVDRGQK------LFRRNK--DAKSL 775
EDAMI+NKS+ RG HG +Y+ +DL + + + D+ Q LF +
Sbjct: 749 EDAMIINKSAYQRGFGHGVVYKNVIVDLDLEADRRRDQSQSEPADFLLFGSPPPISTQKT 808
Query: 776 HSVIDSDGLPYVGQMIHPGEP-YCSIYDKTTNSWRTNSRKGSESVFVD---YVAVDMKNS 831
S I DGLP +GQ I G+ +C+ Y+ + K +E+ +VD ++ K
Sbjct: 809 TSYIGEDGLPEIGQKICHGDSLWCAFYELSCKKV-IGVHKDAETAYVDAVRFIGHANKGQ 867
Query: 832 KNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHA 891
K++ +KA+I R RNP+IGDKFSSRHGQKGV S LWP+ DMPF+ +G+ PD++INPHA
Sbjct: 868 KSIQRKASITLRFPRNPVIGDKFSSRHGQKGVLSVLWPECDMPFTE-SGITPDILINPHA 926
Query: 892 FPSRMTIAMLLESVAAKE 909
FPSRMTI ML+ES+A K
Sbjct: 927 FPSRMTIGMLVESMAGKS 944
>gi|339257860|ref|XP_003369116.1| DNA-directed RNA polymerase I subunit RPA2 [Trichinella spiralis]
gi|316966676|gb|EFV51221.1| DNA-directed RNA polymerase I subunit RPA2 [Trichinella spiralis]
Length = 1177
Score = 539 bits (1389), Expect = e-150, Method: Compositional matrix adjust.
Identities = 335/938 (35%), Positives = 507/938 (54%), Gaps = 91/938 (9%)
Query: 14 ELVRHHIESFDYMLDEGLSEMFDH------------------------CRQAKISYTGKL 49
ELV HI+SF+Y ++G+++ ++ CR + SY+ KL
Sbjct: 38 ELVEPHIKSFNYFAEQGITQAVENPFIGFPAISKDGGDANALKLWPSECRVSCRSYSAKL 97
Query: 50 MADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFIL 109
+A + + V R N G P+ML + RCHL +L+ KEE EMGGYFI+
Sbjct: 98 LATLTIKI--NNQVVDSARRNLGDIPIMLMSNRCHLTKLSPNQLMKEKEEMNEMGGYFIV 155
Query: 110 NGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNG 169
NG E+V R +I ++NY S+ + +++ + +S+ + Y +
Sbjct: 156 NGQEKVVRMLIAQRRNYVGSLY----------FVSLWLLLGRNGSNVASIIPNMAYHCDV 205
Query: 170 SVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERV 229
+ + P+G A D D ++ L ++E + KG V +
Sbjct: 206 FEIIILSAIISSIICPIGACCYATYDCPDQFLYTELMRSFNED-EFWKGCVVN------- 257
Query: 230 KIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDNNDK 289
+L +++ +L ++ L ++G F+ + + S + + +I Y+ VHLN + +K
Sbjct: 258 --MLMDLKSENLNSKADALSYLGRLFRAALPVITSTTNMEAGQILIDRYLCVHLNTDREK 315
Query: 290 FNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQD 349
F+ LI+ QKL SL V ++PDS+ NQE+LLPG ++ + LKE+LE L + + I D
Sbjct: 316 FDFLIYSAQKLCSLAKEEIVPESPDSIANQEVLLPGMILLLILKERLEIMLTRMCRYIVD 375
Query: 350 EI-ENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQ 408
I ++ +F ++ K + + ++E L+TG L + Q++G+ +
Sbjct: 376 SIICDSSHQFQARHITTAVKF-----TSLVTRALEYFLRTGNLPSNVHHAFSQQSGFCII 430
Query: 409 AERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTS 468
AERLN LRF+ FR +HRGA F+ +R+T VRKL E+WGF+CPVHTPDG PCGLLNH+ +
Sbjct: 431 AERLNHLRFVGHFRGIHRGAFFSEVRSTDVRKLSTEAWGFICPVHTPDGSPCGLLNHLAA 490
Query: 469 TCRVASYYDSRG-NIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVG 527
+CRV + SR I SK L L M+ L + V++DG V+G
Sbjct: 491 SCRVTATQGSRDLVIHAISKFG---LLSLTASAML----NLDSATDQYYYRVIVDGSVIG 543
Query: 528 VIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRN 587
VI +++ + LR+ K S + + + YPGL++FT +F+RPV N
Sbjct: 544 VIGEENVQQAIQILRKEKSSGVFLSIFTEICFFSRKTFSMHYPGLFIFTEFGRFMRPVNN 603
Query: 588 ISLPSEESQNIELIGPFEQVFMEIRC--PDGGDGGRRNAFPATHEEIHPTGMLSVVANLT 645
+S+ E N E IG EQ+F+ I C P+ + G TH+EI P +LS A +
Sbjct: 604 LSI--EPPSNREYIGTMEQLFLGI-CIGPEDFEEG-----VTTHQEIDPANILSFNAKMI 655
Query: 646 PYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDE 705
P+ DHNQSPRN+YQCQMAKQTMG V +L R D K+Y L+TPQ+P+V+T +Y Y ID
Sbjct: 656 PFPDHNQSPRNVYQCQMAKQTMGTPVHSLVHRTDNKMYCLRTPQSPLVKTESYDAYAIDN 715
Query: 706 YPTGTNAIVAVLAYT-----GYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSD---DGN 757
YP GTNAIVAV++YT GYDMEDAMI+NK+SV+RG H IY+TE I+L+D DG
Sbjct: 716 YPLGTNAIVAVISYTKLSIQGYDMEDAMIINKASVERGFAHACIYKTERINLNDRLYDGR 775
Query: 758 KVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCS------IYDKTTNSWRTN 811
V FRR+ +L + +D DGLP VG++ +P + +Y + + +R
Sbjct: 776 NV-----FFRRDPADATLSAFVDEDGLPQVGKLYSKNDPLYTGQRNWILYGEKISQFRRC 830
Query: 812 SRKGSESVF-VDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPD 870
R+ ++ + + + + I + RNP +GDKF+SRHGQKG+ S LWP
Sbjct: 831 IRRQYKNYWQCKWCRTVEAYLRYVSCYCKIFGDYHRNPFVGDKFASRHGQKGINSFLWPA 890
Query: 871 IDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
+MPF+ +GM PD+I NPH FPSRMT+ M++ES+A K
Sbjct: 891 ENMPFTE-SGMVPDIIFNPHGFPSRMTVGMMIESMAGK 927
>gi|123469849|ref|XP_001318134.1| DNA-directed RNA polymerase, beta subunit family protein
[Trichomonas vaginalis G3]
gi|121900885|gb|EAY05911.1| DNA-directed RNA polymerase, beta subunit family protein
[Trichomonas vaginalis G3]
Length = 1104
Score = 533 bits (1373), Expect = e-148, Method: Compositional matrix adjust.
Identities = 318/873 (36%), Positives = 468/873 (53%), Gaps = 58/873 (6%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR +Y G L +E D P + PVM+ + CHL+G Q+ +L
Sbjct: 79 CRLGGQTYGGSLNIILEAAINDL--PPKKFSVVANNIPVMVNSDLCHLKGLTPQEKGALM 136
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
EE E GGYFI +G E++ R +IL +QNY ++ R SF R +T+ A R + D S
Sbjct: 137 EEPTEAGGYFIYSGYEKLLRLLILNRQNYVFALNRPSFHSRGPTFTNFATSFRSMAPDCS 196
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
S+T ++Y G++ + +Q + + +P+ I+L+ALV+ +D I+ +
Sbjct: 197 SITTNVHYQNTGNMVVLIPIQRRMFFVPLPILLRALVEVDDRTIYESIC----------- 245
Query: 218 GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRD 277
G S+RV L +L + TR +G HF+ V+ + + E +++
Sbjct: 246 GQNPDSFYSDRVIATLRYASELDIHTRAGARDFLGAHFRTVLQCPRHFTNEECCEVLLKR 305
Query: 278 YIFVHLNDN--NDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEK 335
+F HL+D + KF+LLI+M ++L LV + DN D+ E+L PG L L +
Sbjct: 306 NLFPHLSDEAPSKKFDLLIYMTRRLLQLVKGEILPDNMDANSAHELLTPGTLWLPALSDA 365
Query: 336 LEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQT 395
+ D+L+ + + +N FD ++ +++KN S + + + TG L +
Sbjct: 366 ITDFLKATAANVYKDEKNAIDDFD-----ALQTILKKNASG-VENRMRYLFSTGSLRGNS 419
Query: 396 GLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTP 455
L L Q G ++ AER+N+ R+++ FR+VHRGA F ++TT+VR LLPESWGF+CPVHTP
Sbjct: 420 TLGLSQTEGLSIIAERINYCRYLAHFRSVHRGAFFTTMKTTAVRYLLPESWGFMCPVHTP 479
Query: 456 DGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPA 515
DG CGLL H+ C + + G+ + F + I+++ GM+P L G
Sbjct: 480 DGGLCGLLTHLARFCEIVT-----GDSQGFKE----IVQIFTNYGMVPFL------GSGD 524
Query: 516 VLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLF 575
++ V++DGRVVG I V L+ + +IP E+ +P G +Y+F
Sbjct: 525 MVPVIVDGRVVGSIRERLSSAAVEALKTARRKG--IIPKMAEIADLPA--GSFTRSIYVF 580
Query: 576 TSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIHPT 635
+ + +RPV N+ ++Q E GP EQ+FM+I + + EIH T
Sbjct: 581 LNQQRMMRPVFNV-----KAQEQEYAGPLEQIFMDIASNPKDES-------KAYREIHHT 628
Query: 636 GMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRT 695
MLS++A+LTP+SD+NQSPRNMYQCQMAKQTMG+ + K YH+ PQ PIVRT
Sbjct: 629 AMLSLIASLTPFSDYNQSPRNMYQCQMAKQTMGYPSHREAASTEVKTYHVHYPQRPIVRT 688
Query: 696 NTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDD 755
+ ++++ GTNA VAVL+YTGYDMEDA+++NK SV+RG HG IY+T +
Sbjct: 689 MEQDSHALEDFLLGTNACVAVLSYTGYDMEDALLINKCSVERGFGHGCIYKTHRYTAEE- 747
Query: 756 GNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKG 815
F KD + +D+DGLP+VGQ + G +Y+ N R S K
Sbjct: 748 ----IESNSYFCNTKDGVIVDPDLDADGLPFVGQRVSKGCKLLRVYNPKENKERIMSYKD 803
Query: 816 SESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPF 875
E FVD V + ++FR R P IGDKFSSRHGQKGV S WP +MPF
Sbjct: 804 GEDGFVDKVITTTSDDGKRVLSVVLKFRMVRTPTIGDKFSSRHGQKGVFSFPWPQENMPF 863
Query: 876 SGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
G+ PD+IINPHAFPSRMTI ML+ES+ K
Sbjct: 864 CE-NGITPDVIINPHAFPSRMTIGMLIESMCGK 895
>gi|195147244|ref|XP_002014590.1| GL18874 [Drosophila persimilis]
gi|194106543|gb|EDW28586.1| GL18874 [Drosophila persimilis]
Length = 1127
Score = 531 bits (1369), Expect = e-148, Method: Compositional matrix adjust.
Identities = 315/881 (35%), Positives = 482/881 (54%), Gaps = 66/881 (7%)
Query: 39 RQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKE 98
RQ SY+G M V + G + G+ PVML+++ C+L Q++V E
Sbjct: 100 RQLHASYSG--MCSVRLAWSVNGLQKTPINMDLGEVPVMLRSKACNLGKGTPQEMVKHGE 157
Query: 99 EAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSS 158
E GG F++ G E++ R ++L ++N+P+ + RS+++DR + ++D ++++ VR D+ S
Sbjct: 158 HDTEWGGIFVIRGNEKIVRMLVLVRRNHPICVKRSTWKDRGQNFSDLGIMVQTVRDDECS 217
Query: 159 VTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKG 218
+ L+YL NG+ R F + +PV ++LK L+D D EI+N L + Y+K++
Sbjct: 218 FSNVLHYLNNGTARFMFSHIKRLSYVPVCLILKCLMDYTDEEIYNRLV----QGYEKDQY 273
Query: 219 AVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETV---- 274
V S V+ +L +V + + T QC H+ P+ LQ + A
Sbjct: 274 YVSS------VQTMLRDVHNEGVYTHAQCRV---LHWHPLPVSLQRRARVAARRGRHRLY 324
Query: 275 -IRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLK 333
R ++ + + S ++ QE+LLPGHL YL
Sbjct: 325 SARTHLGSPWTPTKRSSSSSSLWCRSSSSAPRASTRWKTLTRPMMQEVLLPGHLYQKYLG 384
Query: 334 EKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLAT 393
E++E+W+ ++++Q ++ + + + M + + +G SIE+ L TG +A+
Sbjct: 385 ERIENWVAMVRRVLQKKLSTPD---SLLTSSILTQSMRQ--AGGVGKSIESFLATGNIAS 439
Query: 394 QTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVH 453
TGL L Q +G + AE +N +R++S FRA+HRG+ F +RTT R+LLP++WGF+CPVH
Sbjct: 440 NTGLGLMQNSGLVIMAENINRMRYMSHFRAIHRGSYFTTMRTTEARQLLPDAWGFICPVH 499
Query: 454 TPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGP 513
TPDG PCGLLNH+T TC ++ D K+ +I LI +GM+P ++
Sbjct: 500 TPDGTPCGLLNHLTLTCEISKRPDP--------KLVQAIPPKLIEMGMLPL--SCQRNPD 549
Query: 514 PAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLY 573
+ VLLDG+ +G I S+ K+V LR K++ A +P +E+G++P G +PGLY
Sbjct: 550 SKMYVVLLDGKHLGHIFQSDACKIVEDLRYEKITGA--VPQMMEIGFIPFKKNGQFPGLY 607
Query: 574 LFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFP--ATHEE 631
L T P + +RPV NI + +E IG EQ++MEI + +P TH E
Sbjct: 608 LSTGPARMMRPVWNIKW-----KQVEYIGTLEQLYMEIAIDP------KEMYPDFTTHLE 656
Query: 632 IHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTP 691
+ T +S +ANL P D+NQSPRNMYQCQM KQTMG +A KLY LQTP TP
Sbjct: 657 LAKTHFMSNLANLIPMPDYNQSPRNMYQCQMGKQTMGTPCLNWPKQAANKLYRLQTPGTP 716
Query: 692 IVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETID 751
+ R Y +D++ GTNAIVAV++YTGYDMEDAMI+NKS+ +RG +G IY+++ +
Sbjct: 717 LFRPVHYDNIQLDDFAMGTNAIVAVISYTGYDMEDAMIINKSAYERGFAYGSIYKSKFVQ 776
Query: 752 LSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTN 811
L + F R+ L +D+DGLP+ G + G P +D +++
Sbjct: 777 LP-------KKSSYFARHPHMPELAKYLDTDGLPHPGAKLTFGCPLYCYFDGEVATYKVE 829
Query: 812 SRKGSESVFVDYV----AVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQL 867
E FVD + + D+ K + I R R IGDKF+SR GQKG+CSQ
Sbjct: 830 KMDEKEECFVDSIRQLGSFDLTPKKTV----CITLRVPRPATIGDKFASRAGQKGICSQK 885
Query: 868 WPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
+P D+PF+ +GM PD++ NPH FPSRMTIAM++E++A K
Sbjct: 886 YPAEDLPFTE-SGMIPDIVFNPHGFPSRMTIAMMIETMAGK 925
>gi|119593997|gb|EAW73591.1| polymerase (RNA) I polypeptide B, 128kDa, isoform CRA_b [Homo
sapiens]
Length = 824
Score = 530 bits (1364), Expect = e-147, Method: Compositional matrix adjust.
Identities = 313/837 (37%), Positives = 451/837 (53%), Gaps = 103/837 (12%)
Query: 12 LRELVRHHIESFDYMLDEGLS--------------------EMFD--------------- 36
L+EL R H+ESF+Y + EGL + D
Sbjct: 35 LQELTRAHVESFNYAVHEGLGLAVQAIPPFEFAFKDERISFTILDAVISPPTVPKGTICK 94
Query: 37 -------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGAD 89
CR + +Y GKL AD+ + ++++ G P+M+K++ C+L+
Sbjct: 95 EANVYPAECRGRRSTYRGKLTADINWAVNGISKGIIKQFL--GYVPIMVKSKLCNLRNLP 152
Query: 90 SQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVI 149
Q L+ EEA EMGGYFI+NG+E+V R +I+P++N+P++M+R ++ R GYT V +
Sbjct: 153 PQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWKTRGPGYTQYGVSM 212
Query: 150 RCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY 209
CVR++ S+V + L+YL NG+V L F + + + LP+G LKALV +D +IF L
Sbjct: 213 HCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELI--- 269
Query: 210 DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYA 269
KE + VS+ ++I++ E +T+ Q L ++GE F+ ++
Sbjct: 270 ---KGKEDDSFLRNSVSQMLRIVMEE----GCSTQKQVLNYLGECFRVKLNVPDWYPNEQ 322
Query: 270 VAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
AE + I +HL N +KF +L M +KLF+L + DNPDSL NQE+L PG L
Sbjct: 323 AAEFLFNQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMEDNPDSLVNQEVLTPGQLFL 382
Query: 330 IYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTG 389
++LKEKLE WL K + + + NL I + + E + TG
Sbjct: 383 MFLKEKLEGWLVSIKIAFDKKAQKTSVSMNTDNLMRIFTM-----GIDLTKPFEYLFATG 437
Query: 390 RLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFL 449
L ++TGL L Q +G V A++LNF+R++S FR VHRGA FA +RTT+VR+LLPESWGFL
Sbjct: 438 NLRSKTGLGLLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVRRLLPESWGFL 497
Query: 450 CPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLV 509
CPVHTPDGEPCGL+NH+T+ C V + + +I L +GV I P
Sbjct: 498 CPVHTPDGEPCGLMNHLTAVCEVVTQFVYTASI--------PALLCNLGVTPIDGAPHRS 549
Query: 510 KSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGA- 568
S VLLDG +VG + + LR KV IP +EV +P++ +
Sbjct: 550 YS---ECYPVLLDGVMVGWVDKDLAPGIADSLRHFKVLREKRIPPWMEVVLIPMTGKPSL 606
Query: 569 YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPAT 628
YPGL+LFT+P + VRPV+N++L E ELIG EQ+FM + + A T
Sbjct: 607 YPGLFLFTTPCRLVRPVQNLALGKE-----ELIGTMEQIFMNVAIFE----DEVFAGVTT 657
Query: 629 HEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTP 688
H+E+ P +LSV+AN P FSV + R+D KLY LQTP
Sbjct: 658 HQELFPHSLLSVIANFIP----------------------FSVLTYQDRSDNKLYRLQTP 695
Query: 689 QTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTE 748
Q+P+VR + Y Y +D YP GTNAIVAV++YTGYDMEDAMI+NK+S +RG HG +Y++E
Sbjct: 696 QSPLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSE 755
Query: 749 TIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTT 805
IDLS+ + D + D + L +D DGLP++G + G+PY S + T
Sbjct: 756 FIDLSEKIKQGDSSLVFGIKPGDPRVLQK-LDDDGLPFIGAKLQYGDPYYSYLNLNT 811
>gi|392512568|emb|CAD26190.2| DNA-DIRECTED RNA POLYMERASE I, SECOND LARGEST SUBUNIT
[Encephalitozoon cuniculi GB-M1]
Length = 1050
Score = 525 bits (1352), Expect = e-146, Method: Compositional matrix adjust.
Identities = 328/888 (36%), Positives = 484/888 (54%), Gaps = 115/888 (12%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR+ ++Y GK++ V VV E + G FP+M+++ CHL G ++ V
Sbjct: 69 CRERGLTYKGKMVVRVSL--FHDNKHVVTEDKSAGHFPIMVRSTLCHLNGIKNKNEVG-- 124
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
E+ E+GGYFI+NG++R R I+ K+N+ + R + ++D V +RCV +D+
Sbjct: 125 EDEDEIGGYFIINGIDRFIRFNIMQKRNHIFAF---KMRKKTSFFSDYMVSMRCVGRDEI 181
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
L+Y +G+V + + + E+L P+ +VLKALV+T D E+F
Sbjct: 182 GHMNFLHYCTDGNVVIKIFHKKYEFLFPLVLVLKALVNTTDEELF--------------- 226
Query: 218 GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRD 277
GA+G +R +L + ++ +R +CL +IG F + L ES VAE ++
Sbjct: 227 GALGG---GQRAVHLLKCFAEHNVFSRTECLDYIGSRFSAI---LNFESKAEVAEEILSK 280
Query: 278 YIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLE 337
Y+ HL+ N DKFN LI +KLFS VD+ D+PDS N E+ +I+ +L++++E
Sbjct: 281 YVVSHLSSNLDKFNFLILAARKLFSFVDNEITEDDPDSPSNHELGTETQIISSFLRDRIE 340
Query: 338 DWLR---------------KGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSI 382
+++R + +KL D + +G D +++ I+++ K S IG +
Sbjct: 341 EFMRFFSMMCRKTYYKLEGEKRKLEGDSVTESGFCEDELDISKIREIF-KRTSINIGQRM 399
Query: 383 ETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLL 442
E L +G + + D+ Q G+++ AER+NF +++S FR V+RG + TS+RKL
Sbjct: 400 ELFLSSGSITLTSCSDILQTLGFSITAERINFYKYLSHFRGVNRGTHIPSM-VTSIRKLR 458
Query: 443 PESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMI 502
PESWGFLCPVHTPDG PCG+L HM V S D DF+ +L G++
Sbjct: 459 PESWGFLCPVHTPDGAPCGVLLHMAKEAEVVSRDD------DFNT------DILFEFGVV 506
Query: 503 PSLPKLVKSGPPAVLSVLLDGRVVGVIPS-SEIEKVVAHLRRLKVSAASVIPDDLEVGYV 561
PS+ + V+ G P VL++GRVVG S S++ ++V R + L + V
Sbjct: 507 PSI-RGVEMGIP----VLVNGRVVGSTSSPSDLTRMVREYRN---------RNGLMIEVV 552
Query: 562 PLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDG-GDGG 620
S +P + +F+S +F R V N L SEE IG EQVF+ I +G GDG
Sbjct: 553 YTSEPKMFPSVCIFSSVGRFARKVMNRRLGSEE-----WIGIMEQVFLNIDTEEGAGDG- 606
Query: 621 RRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQ 680
+ EI +G+L ++A L PYSDHNQSPRNMYQCQMAKQ +G ++ R D
Sbjct: 607 -------DYYEIDKSGILGIIAGLIPYSDHNQSPRNMYQCQMAKQAIGHPAHNIRTRTDP 659
Query: 681 KLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMC 740
+Y + Q+PIVRT Y + +YP G N +VAVL+YT YDMEDA+++NK+S+DRG+
Sbjct: 660 TMYTVNYLQSPIVRTEGYEM--VKDYPVGINCMVAVLSYTAYDMEDALVINKNSIDRGLF 717
Query: 741 HGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSI 800
G +Y+TE + L D G + +R + +L+ +D DG Y + +
Sbjct: 718 TGYVYKTEKVPL-DKGYFFTYLPSVGQRIQKDDTLYRYVDQDGREYEKRYL--------- 767
Query: 801 YDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQ 860
G+E VD V V +N + A R R+P+IGDKFSSRHGQ
Sbjct: 768 --------------GTEPGIVDIVRV-FENDMG-ERCATFTIRIVRSPMIGDKFSSRHGQ 811
Query: 861 KGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
KGVCS WP IDMPF+ +G PD+IINPHAFPSRMTI ML+ES+A K
Sbjct: 812 KGVCSMHWPGIDMPFTE-SGCVPDIIINPHAFPSRMTIGMLIESIAGK 858
>gi|19173004|ref|NP_597555.1| DNA-DIRECTED RNA POLYMERASE I, SECOND LARGEST SUBUNIT
[Encephalitozoon cuniculi GB-M1]
Length = 1062
Score = 525 bits (1351), Expect = e-146, Method: Compositional matrix adjust.
Identities = 328/888 (36%), Positives = 484/888 (54%), Gaps = 115/888 (12%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR+ ++Y GK++ V VV E + G FP+M+++ CHL G ++ V
Sbjct: 81 CRERGLTYKGKMVVRVSL--FHDNKHVVTEDKSAGHFPIMVRSTLCHLNGIKNKNEVG-- 136
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
E+ E+GGYFI+NG++R R I+ K+N+ + R + ++D V +RCV +D+
Sbjct: 137 EDEDEIGGYFIINGIDRFIRFNIMQKRNHIFAF---KMRKKTSFFSDYMVSMRCVGRDEI 193
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
L+Y +G+V + + + E+L P+ +VLKALV+T D E+F
Sbjct: 194 GHMNFLHYCTDGNVVIKIFHKKYEFLFPLVLVLKALVNTTDEELF--------------- 238
Query: 218 GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRD 277
GA+G +R +L + ++ +R +CL +IG F + L ES VAE ++
Sbjct: 239 GALGG---GQRAVHLLKCFAEHNVFSRTECLDYIGSRFSAI---LNFESKAEVAEEILSK 292
Query: 278 YIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLE 337
Y+ HL+ N DKFN LI +KLFS VD+ D+PDS N E+ +I+ +L++++E
Sbjct: 293 YVVSHLSSNLDKFNFLILAARKLFSFVDNEITEDDPDSPSNHELGTETQIISSFLRDRIE 352
Query: 338 DWLR---------------KGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSI 382
+++R + +KL D + +G D +++ I+++ K S IG +
Sbjct: 353 EFMRFFSMMCRKTYYKLEGEKRKLEGDSVTESGFCEDELDISKIREIF-KRTSINIGQRM 411
Query: 383 ETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLL 442
E L +G + + D+ Q G+++ AER+NF +++S FR V+RG + TS+RKL
Sbjct: 412 ELFLSSGSITLTSCSDILQTLGFSITAERINFYKYLSHFRGVNRGTHIPSM-VTSIRKLR 470
Query: 443 PESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMI 502
PESWGFLCPVHTPDG PCG+L HM V S D DF+ +L G++
Sbjct: 471 PESWGFLCPVHTPDGAPCGVLLHMAKEAEVVSRDD------DFNT------DILFEFGVV 518
Query: 503 PSLPKLVKSGPPAVLSVLLDGRVVGVIPS-SEIEKVVAHLRRLKVSAASVIPDDLEVGYV 561
PS+ + V+ G P VL++GRVVG S S++ ++V R + L + V
Sbjct: 519 PSI-RGVEMGIP----VLVNGRVVGSTSSPSDLTRMVREYRN---------RNGLMIEVV 564
Query: 562 PLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDG-GDGG 620
S +P + +F+S +F R V N L SEE IG EQVF+ I +G GDG
Sbjct: 565 YTSEPKMFPSVCIFSSVGRFARKVMNRRLGSEE-----WIGIMEQVFLNIDTEEGAGDG- 618
Query: 621 RRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQ 680
+ EI +G+L ++A L PYSDHNQSPRNMYQCQMAKQ +G ++ R D
Sbjct: 619 -------DYYEIDKSGILGIIAGLIPYSDHNQSPRNMYQCQMAKQAIGHPAHNIRTRTDP 671
Query: 681 KLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMC 740
+Y + Q+PIVRT Y + +YP G N +VAVL+YT YDMEDA+++NK+S+DRG+
Sbjct: 672 TMYTVNYLQSPIVRTEGYEM--VKDYPVGINCMVAVLSYTAYDMEDALVINKNSIDRGLF 729
Query: 741 HGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSI 800
G +Y+TE + L D G + +R + +L+ +D DG Y + +
Sbjct: 730 TGYVYKTEKVPL-DKGYFFTYLPSVGQRIQKDDTLYRYVDQDGREYEKRYL--------- 779
Query: 801 YDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQ 860
G+E VD V V +N + A R R+P+IGDKFSSRHGQ
Sbjct: 780 --------------GTEPGIVDIVRV-FENDMG-ERCATFTIRIVRSPMIGDKFSSRHGQ 823
Query: 861 KGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
KGVCS WP IDMPF+ +G PD+IINPHAFPSRMTI ML+ES+A K
Sbjct: 824 KGVCSMHWPGIDMPFTE-SGCVPDIIINPHAFPSRMTIGMLIESIAGK 870
>gi|449329645|gb|AGE95915.1| DNA-directed RNA polymerase I second largest subunit
[Encephalitozoon cuniculi]
Length = 1062
Score = 524 bits (1350), Expect = e-146, Method: Compositional matrix adjust.
Identities = 328/888 (36%), Positives = 484/888 (54%), Gaps = 115/888 (12%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR+ ++Y GK++ V VV E + G FP+M+++ CHL G ++ V
Sbjct: 81 CRERGLTYKGKMVVRVSL--FHDNKHVVTEDKSAGHFPIMVRSTLCHLNGIKNKNEVG-- 136
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
E+ E+GGYFI+NG++R R I+ K+N+ + R + ++D V +RCV +D+
Sbjct: 137 EDEDEIGGYFIINGIDRFVRFNIMQKRNHIFAF---KMRKKTSFFSDYMVSMRCVGRDEI 193
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
L+Y +G+V + + + E+L P+ +VLKALV+T D E+F
Sbjct: 194 GHMNFLHYCTDGNVVIKIFHKKYEFLFPLVLVLKALVNTTDEELF--------------- 238
Query: 218 GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRD 277
GA+G +R +L + ++ +R +CL +IG F + L ES VAE ++
Sbjct: 239 GALGG---GQRAVHLLKCFAEHNVFSRTECLDYIGSRFSAI---LNFESKAEVAEEILSK 292
Query: 278 YIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLE 337
Y+ HL+ N DKFN LI +KLFS VD+ D+PDS N E+ +I+ +L++++E
Sbjct: 293 YVVSHLSSNLDKFNFLILAARKLFSFVDNEITEDDPDSPSNHELGTETQIISSFLRDRIE 352
Query: 338 DWLR---------------KGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSI 382
+++R + +KL D + +G D +++ I+++ K S IG +
Sbjct: 353 EFMRFFSMMCRKTYYKLEGEKRKLEGDSVTESGFCEDELDISKIREIF-KRTSINIGQRM 411
Query: 383 ETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLL 442
E L +G + + D+ Q G+++ AER+NF +++S FR V+RG + TS+RKL
Sbjct: 412 ELFLSSGSITLTSCSDILQTLGFSITAERINFYKYLSHFRGVNRGTHIPSM-VTSIRKLR 470
Query: 443 PESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMI 502
PESWGFLCPVHTPDG PCG+L HM V S D DF+ +L G++
Sbjct: 471 PESWGFLCPVHTPDGAPCGVLLHMAKEAEVVSRDD------DFNT------DILFEFGVV 518
Query: 503 PSLPKLVKSGPPAVLSVLLDGRVVGVIPS-SEIEKVVAHLRRLKVSAASVIPDDLEVGYV 561
PS+ + V+ G P VL++GRVVG S S++ ++V R + L + V
Sbjct: 519 PSI-RGVEMGIP----VLVNGRVVGSTSSPSDLTRMVREYRN---------RNGLMIEVV 564
Query: 562 PLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDG-GDGG 620
S +P + +F+S +F R V N L SEE IG EQVF+ I +G GDG
Sbjct: 565 YTSEPKMFPSVCIFSSVGRFARKVMNRRLGSEE-----WIGIMEQVFLNIDTEEGAGDG- 618
Query: 621 RRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQ 680
+ EI +G+L ++A L PYSDHNQSPRNMYQCQMAKQ +G ++ R D
Sbjct: 619 -------DYYEIDKSGILGIIAGLIPYSDHNQSPRNMYQCQMAKQAIGHPAHNIRTRTDP 671
Query: 681 KLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMC 740
+Y + Q+PIVRT Y + +YP G N +VAVL+YT YDMEDA+++NK+S+DRG+
Sbjct: 672 TMYTVNYLQSPIVRTEGYEM--VKDYPVGINCMVAVLSYTAYDMEDALVINKNSIDRGLF 729
Query: 741 HGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSI 800
G +Y+TE + L D G + +R + +L+ +D DG Y + +
Sbjct: 730 TGYVYKTEKVPL-DKGYFFTYLPSVGQRIQKDDTLYRYVDQDGREYEKRYL--------- 779
Query: 801 YDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQ 860
G+E VD V V +N + A R R+P+IGDKFSSRHGQ
Sbjct: 780 --------------GTEPGIVDIVRV-FENDMG-ERCATFTIRIVRSPMIGDKFSSRHGQ 823
Query: 861 KGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
KGVCS WP IDMPF+ +G PD+IINPHAFPSRMTI ML+ES+A K
Sbjct: 824 KGVCSMHWPGIDMPFTE-SGCVPDIIINPHAFPSRMTIGMLIESIAGK 870
>gi|189192000|ref|XP_001932339.1| DNA-directed RNA polymerase I polypeptide 2 [Pyrenophora
tritici-repentis Pt-1C-BFP]
gi|187973945|gb|EDU41444.1| DNA-directed RNA polymerase I polypeptide 2 [Pyrenophora
tritici-repentis Pt-1C-BFP]
Length = 1178
Score = 519 bits (1337), Expect = e-144, Method: Compositional matrix adjust.
Identities = 336/916 (36%), Positives = 489/916 (53%), Gaps = 128/916 (13%)
Query: 37 HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
R+ +Y GK+ A ++++ ++ G E + G P+ML++ RCHL+G LV
Sbjct: 122 EARERHATYRGKMRARLQWR-INQGD-WQEEMADLGSVPIMLRSNRCHLEGLSPAALVKS 179
Query: 97 KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQ 156
KEE+ E GGYFI+NG E++ R + + ++NYPM++ R +F +R GYT + IR +R DQ
Sbjct: 180 KEESEECGGYFIVNGNEKMIRPLQVNRRNYPMAIKRGAFTNRGPGYTQYGIQIRSMRPDQ 239
Query: 157 SSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKE 216
+S T L+YL +G+V F + EYL+P+ +++KALV+TND EIF L K +E
Sbjct: 240 TSQTNALHYLDDGNVNFRFSWRKSEYLVPLVMIMKALVETNDREIFEGLVGAAGSKGLRE 299
Query: 217 KGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIR 276
K VS+RV+++L + L T+ + +G+ F+ V+ S + +R
Sbjct: 300 K-----QFVSDRVELLLRTFKVYGLHTKAKTRAFLGQKFKVVLQLPPDISDFDGGTEFLR 354
Query: 277 DYIFVHLN-------DNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
+ HL + DKF +L+FM +KL+SLV+ DNPD++Q+QEILL G L
Sbjct: 355 KIVLPHLGCVAVTPAQDADKFRMLLFMTRKLYSLVEGECTVDNPDAVQSQEILLGGQLYG 414
Query: 330 IYLKEKLEDWLRKGKKLIQDEIENNGKKFDF-------FNLANIKKVMEKNPSKQIGTSI 382
+ LKE+LE+WL Q + G+K ++ F K++ + IG ++
Sbjct: 415 MILKERLEEWLNS----FQLALREWGRKTEYKPIVSDDFRRDWTSKILRRT-KNNIGDAM 469
Query: 383 ETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLL 442
L +GLD+QQ +GYTV AGL TSV
Sbjct: 470 SYFL--------SGLDMQQTSGYTV----------------------VAGLFPTSV---- 495
Query: 443 PESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMI 502
W P +P R ++Y S G SI + V I
Sbjct: 496 ---WYTEVPSLLSSRQP-----------RSENFYPSLGG---------SIATSNVDVSAI 532
Query: 503 PSL-PKL-VKSGPPAVLS----VLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDL 556
P L KL V A L V LDGRV+G + + V LR KV + +P +L
Sbjct: 533 PKLVAKLGVSRDSSASLDESVVVQLDGRVLGFCSPKQAKVVSDTLRYWKVEGSHGVPLEL 592
Query: 557 EVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDG 616
E+GYVP S G YPG+Y+F+ + RPV+ + L ++ +GPFEQ +M I C D
Sbjct: 593 EIGYVPNSNNGQYPGVYMFSQSARMYRPVKYLPL-----NKLDYVGPFEQPYMSISCTDA 647
Query: 617 ----GDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQ-CQMAKQTMGFSV 671
GD +TH E PT +LS+V+N TP+SD+NQSPRN+Y+ CQM KQ+MG
Sbjct: 648 EIVSGD--------STHVEFDPTNILSIVSNQTPFSDYNQSPRNLYRSCQMGKQSMGTPA 699
Query: 672 QALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILN 731
+L +R D K Y LQT QTPI R + KYG+D +P G NA+VAV++YTGYDM+D +L+
Sbjct: 700 TSLDYRTDNKAYRLQTGQTPIARPPLHNKYGLDNFPNGMNAVVAVISYTGYDMDDGFVLS 759
Query: 732 KSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQ----KLFRRNKDA---KSLHSVIDSDGL 784
+ + +RG HG +Y+T+ +DL ++G++ +R + KLF D+ +D+DGL
Sbjct: 760 RGAHERGFGHGTVYKTKILDL-EEGSRKNRSKRTVTKLFGFAPDSLVESKPKETLDADGL 818
Query: 785 PYVGQMIHPGEPYCSI----YDKTTNSWRTN-------SRKGSESVFVDYVAVDMKNSKN 833
P VG M+ G+ + YD + + K E +V+ V +
Sbjct: 819 PRVGTMLRSGDVIAAWHTVSYDTAMDDYTNKDGQTQFFKYKEDEVAYVEQVRIIGSEDGT 878
Query: 834 LP-QKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAF 892
P QK +I+ R R+PI+GDKFSSRHGQKGV SQ + DMPFS TG++PD+IINPHAF
Sbjct: 879 QPCQKLSIKLRIPRSPIVGDKFSSRHGQKGVVSQKFSVADMPFS-ETGIQPDVIINPHAF 937
Query: 893 PSRMTIAMLLESVAAK 908
PSRMTI M +ES+A K
Sbjct: 938 PSRMTIGMFIESLAGK 953
>gi|341899204|gb|EGT55139.1| hypothetical protein CAEBREN_31579 [Caenorhabditis brenneri]
Length = 1052
Score = 517 bits (1332), Expect = e-143, Method: Compositional matrix adjust.
Identities = 293/757 (38%), Positives = 427/757 (56%), Gaps = 64/757 (8%)
Query: 173 LGFWLQG--------KEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPL 224
G+W K + +P+ V+KAL D ND I ++G
Sbjct: 122 FGYWYDATGTFNSEEKFFYVPLMYVVKALTDKNDAVIAAGF----------KRGRPQDQF 171
Query: 225 VSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQS--ESYYAVAETVIRDYIFVH 282
S + +LA+ Q+ + + L+ IG F+ I + E +IR+ + +H
Sbjct: 172 FSSCILNMLAQCQEEGILNQQSALRAIGSRFRVAISDRVAPWEDDLEAGRFIIRECVLIH 231
Query: 283 LNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRK 342
LN + +KF L +M QKL +LV + PD+ Q QE + GH++ + L+E++E+ +
Sbjct: 232 LNSDEEKFFTLAYMAQKLIALVKGECAPETPDNPQFQEASVSGHILLLILRERMENII-- 289
Query: 343 GKKLIQDEIENNGKKFDF-FNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQ 401
+++ ++E K DF A I K + + +I + L TG L T+ GL LQQ
Sbjct: 290 --GMVRRKLEFMSAKNDFILTSAAIIKALGNHNGGEITRGMAYFLATGNLVTRVGLALQQ 347
Query: 402 RAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCG 461
+G++V AER+N LRF+S FRA+HRGA F +RTT VRKL PE+WGF+CPVHTPDG PCG
Sbjct: 348 ESGFSVIAERINQLRFVSHFRAIHRGAFFMEMRTTDVRKLRPEAWGFICPVHTPDGAPCG 407
Query: 462 LLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPA--VLSV 519
LLNH+T++CR+ ++ N+ +L +GM K V PP + V
Sbjct: 408 LLNHVTASCRIVTHLTDNSNVP----------AMLAELGMYTQ--KTVTLAPPGEELYPV 455
Query: 520 LLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLS-----LGGAYPGLYL 574
L+DGR +G +P ++ + +LR KV+ + IP E+ V S + YPG+Y+
Sbjct: 456 LMDGRFIGYVPIAKAASIERYLRCAKVAKDARIPYTAEIALVRRSTDIKNIQTQYPGIYI 515
Query: 575 FTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRNAFPATHEEIH 633
+ P + +RPVRN+++ + +E IG FEQV++ + P+ + G H+E+H
Sbjct: 516 LSDPGRLIRPVRNLAMDT-----VEQIGTFEQVYLSVVIDPEEAEPG-----VTMHQELH 565
Query: 634 PTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIV 693
P+ + S NL P+ DHNQSPRN+YQCQM KQTMG +V + RAD K+Y LQ PQ P++
Sbjct: 566 PSCLFSFAGNLIPFPDHNQSPRNVYQCQMGKQTMGTAVHSWHSRADNKMYRLQFPQQPLL 625
Query: 694 RTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLS 753
+ Y KY +DEYP GTNA VAV++YTGYDMEDAM +NK+S RG HG + + E I+L
Sbjct: 626 KLEAYEKYEMDEYPLGTNACVAVISYTGYDMEDAMTINKASYQRGFAHGTVIKVERINLV 685
Query: 754 DDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSR 813
+ K + +F +N + + SDGLP G+ E Y Y+ T ++T+
Sbjct: 686 TEREK----KTIFYKN--PREEIKTVGSDGLPIPGRRYFLDEVYYVTYNVETGDFKTHKF 739
Query: 814 KGSESVFVDYVAV--DMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDI 871
+E + V + + S N Q A I++R RNPIIGDKF+SRHGQKG+ S LWP
Sbjct: 740 HYAEPAYCGLVRIVEQGEGSSNGSQHALIQWRIERNPIIGDKFASRHGQKGINSFLWPVE 799
Query: 872 DMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
+PFS TGM PD+I NPH FPSRMTI M++ES+A K
Sbjct: 800 SLPFSE-TGMVPDIIFNPHGFPSRMTIGMMIESMAGK 835
>gi|67624195|ref|XP_668380.1| DNA-directed RNA polymerase I polypeptide 2 (RNA polymerase I subunit
2) [Cryptosporidium hominis TU502]
gi|54659575|gb|EAL38145.1| DNA-directed RNA polymerase I polypeptide 2 (RNA polymerase I subunit
2) [Cryptosporidium hominis]
Length = 1281
Score = 509 bits (1311), Expect = e-141, Method: Compositional matrix adjust.
Identities = 350/996 (35%), Positives = 496/996 (49%), Gaps = 128/996 (12%)
Query: 23 FDYMLDEGLSEMFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRR 82
F Y G H R ISY+ L + E Y + V + G P+M+K+
Sbjct: 75 FGYSESSGTKLTPQHARNGHISYSAPLWLEFE-GYNSSLDTVSKHSIYAGTIPIMVKSSN 133
Query: 83 CHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGY 142
CHL G +++LV E+ E+GGYFI+NG ERV R VI + NYP+ + R F
Sbjct: 134 CHLFGLGTKELVEKGEDPNEVGGYFIINGNERVIRYVIQQRCNYPIGLKRPRFATFDSFG 193
Query: 143 TDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIF 202
++ AV++R +R D +S LY + L +E+L+P +L A+ D +
Sbjct: 194 SEYAVLMRSLRDDGTSTANYLYGTSDHQCIYRVLLNRQEWLIPFWPLLMAVGSIYDSNVL 253
Query: 203 NHLTCCY----DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTR---------LQCLQ 249
Y DE + + + AE +S + + L
Sbjct: 254 RSKILQYCNPKDENLFNTINMLTLEWGLDNSVGVDAEFNSVSFGNKGPGDTDILENRYLH 313
Query: 250 HIGEH-FQPVIDGLQSESYYAVA-ETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHT 307
IG ++ V L S A +I +Y+ VHL + N K LI M KL L +
Sbjct: 314 QIGRLVWEGVAFHLPPGSLLQEAGRFLIDNYVLVHLEEWNAKLECLILMFIKLIKLQLNE 373
Query: 308 SVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEI-----ENNGKKFDFFN 362
++ DS QE+L PG+L + K+ + +L+K + EI E N + + N
Sbjct: 374 IREESIDSFAYQELLSPGNLYSALFKDAIFSFLQKIRSTYLIEIRSKSGEKNKESKNGAN 433
Query: 363 L----ANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFI 418
L A K V+ KN S I ++ + TG + T T LDLQQ +G+TV A+RLNF RF+
Sbjct: 434 LLRDTAYFKSVLSKNIS-MIPKRLQYFMATGNVKT-TQLDLQQLSGWTVVADRLNFNRFL 491
Query: 419 SFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDS 478
S FRAVHRG F ++TT VRKL E+WGFLCPVHTPDGEPCGLL H++ C + +DS
Sbjct: 492 SHFRAVHRGQFFTTMKTTDVRKLTGETWGFLCPVHTPDGEPCGLLLHLSQDCIPVTQWDS 551
Query: 479 RGNIRDFSKMRTSILRVLI----GVGMIPSL-------------PKLVKSGPPAVLSVLL 521
+ +R ++R ++ I G+G + S P L KS P V+L
Sbjct: 552 QETLR---RLRNYLISHGISCDDGLGSLSSTWGIESSSRDDLYSPDLTKSIP-----VML 603
Query: 522 DGRVVGVIPSSEIEKVVAHLRRLKV-SAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPK 580
DGRV+ IP + LR LK + SV+P E+ VP G + G+Y+FT+P +
Sbjct: 604 DGRVLFHIPREDFMIWENKLRTLKWQTNPSVLPVHAEIACVPPD-SGMFSGIYIFTAPGR 662
Query: 581 FVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDG----------------------GD 618
VRP+ ++ E+ ++ IGP Q +M I + +
Sbjct: 663 LVRPIMHL-----ETAQVDWIGPLGQPWMNIGVTEEETRKSTKLLEIQKRLIGISDTESE 717
Query: 619 GGRRNAFPA-------------------THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQ 659
+N A TH E+HP+ +LSV A+L PY+ HNQSPRNMYQ
Sbjct: 718 EQLKNDLKALKKLIKDNDRVLSSVPVNYTHMELHPSTILSVTASLIPYAHHNQSPRNMYQ 777
Query: 660 CQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAY 719
CQM KQTMG +R D K+Y L TPQ P + T Y+ +G EYPTGTNAIVAV++Y
Sbjct: 778 CQMLKQTMGTPCLNYPYRTDNKMYRLLTPQEPTIITKGYSSFGFSEYPTGTNAIVAVMSY 837
Query: 720 TGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLS-DDGNKVDRGQKLFRRN--KDAKSLH 776
+GYDMEDAMILNKSS DRGM H +Y+T+ I + K + F N D + +
Sbjct: 838 SGYDMEDAMILNKSSYDRGMFHACVYKTKIISAAPPSATKKSDAESYFFHNIGPDGELVV 897
Query: 777 SVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSR----KGSESVFVDY-------VA 825
+ +DGLP +GQ + G P C + + +N+ E FV+ ++
Sbjct: 898 KELSADGLPNIGQRLTKGSPICRVERTGSGGGPSNATIQTYHDDEVAFVEKINRIASGIS 957
Query: 826 VDMKNS-------------KNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDID 872
++++ +K +I+ R RNP++GDKF+SRHGQKG+ S LWP +
Sbjct: 958 IELQQDSLSGGGGDGASSSSGYGEKVSIKLRIVRNPMVGDKFASRHGQKGILSMLWPQEN 1017
Query: 873 MPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
MPFS +GM PD++ NPH FPSRMTI MLLES+ K
Sbjct: 1018 MPFSE-SGMVPDILFNPHGFPSRMTIGMLLESMGGK 1052
>gi|307111256|gb|EFN59491.1| hypothetical protein CHLNCDRAFT_138110, partial [Chlorella
variabilis]
Length = 743
Score = 507 bits (1306), Expect = e-140, Method: Compositional matrix adjust.
Identities = 281/757 (37%), Positives = 413/757 (54%), Gaps = 103/757 (13%)
Query: 12 LRELVRHHIESFDYMLDEGLSEMFDH---------------------------------- 37
L L + H++S+D+ L EG+ + D+
Sbjct: 17 LEALAQPHVDSYDFFLGEGMQHVIDNMDGIEIEQPVSKTRHRFWFENPSVSRPIREDSGA 76
Query: 38 ------------CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHL 85
CR+A+ +Y D+ +Q G P R G PVMLK++ C+L
Sbjct: 77 AASGDQRLFPRECREARTTYKAPFTCDLVYQV--EGMPEQRLSKRLGGLPVMLKSKACYL 134
Query: 86 QGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDK 145
+ ++LV+ KEE+ E GG FI NG+ER+ R +L +++Y M++ R ++ R +T+
Sbjct: 135 RNMTRRELVARKEESNEFGGTFICNGIERIIR--MLNRRHYIMALRRGAYHKRGPSFTEM 192
Query: 146 AVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHL 205
A +IRCVR+D+SS+T + +YL +GS ++ EY +P GIVLK ++ +D E++ L
Sbjct: 193 ATLIRCVRQDESSLTNRCHYLADGSCVFALTIRRAEYFIPAGIVLKCFLEVSDRELYGKL 252
Query: 206 TCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSE 265
G+ V+ER +++L + + L TR+ C++++G F+ +D +
Sbjct: 253 VGSV------AAGSGHQSFVAERAELLLRQAKQFGLHTRVHCVEYLGRLFRATLDAPDRK 306
Query: 266 SYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPG 325
+ Y V E ++RD +F+HL+ DK L + ML KL++L D DNPD+L + E+LLPG
Sbjct: 307 TDYQVGEQLLRDLLFIHLDQPADKLQLTVQMLLKLYALADRQCGEDNPDALTHHEVLLPG 366
Query: 326 HLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETM 385
HL+ L+E+LE L ++ ++ +++ + + + I+K E+ + +G E +
Sbjct: 367 HLLLKVLREQLETALEAFRQQVRRDLDTRPEVVNLQDEQYIRKTAER--MQDVGAKFEYL 424
Query: 386 LKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPES 445
L TG L +++GLDL Q GY +S FR++HRGA FA LRTT+VRKLLPES
Sbjct: 425 LNTGNLVSRSGLDLSQSTGY------------LSHFRSIHRGAYFAELRTTTVRKLLPES 472
Query: 446 WGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSL 505
WGFLCPVHTPDG PCGLLNH T+ CRV + ++S + + + VL G+GM+P
Sbjct: 473 WGFLCPVHTPDGSPCGLLNHFTAACRVVT-HESEEPEEVLAAVTKASAGVLGGLGMVPVA 531
Query: 506 PKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASV-------------- 551
P L P L V +DGRVVG + +S +VAHLR +K ++ +
Sbjct: 532 PNLPAPPTPGHLCVQVDGRVVGHVRASLAGAMVAHLRAIKAASLAAEEQLTPGATLVPLH 591
Query: 552 -----IPDDLEVGYVPLSLGGAYPGLYLFT-------SPPKFVRPVRNISLPSEESQNIE 599
+P EV ++P G YPG+++FT + +R VR I+ S E
Sbjct: 592 DEEMSVPSHAEVVHIPYERGAPYPGIFIFTQARTPGREAARMIRAVRQIA-----SGAAE 646
Query: 600 LIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQ 659
+IG EQ M IR PDGG+GG + TH E MLSVVA+LTPYSD NQSPRNMYQ
Sbjct: 647 MIGSLEQNNMAIRMPDGGEGGTKG-LKFTHAEFATGSMLSVVASLTPYSDFNQSPRNMYQ 705
Query: 660 CQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTN 696
CQMAKQTMG QAL R D K+Y +QTPQTPI RT
Sbjct: 706 CQMAKQTMGTPAQALAHRTDNKMYRIQTPQTPIARTK 742
>gi|401825637|ref|XP_003886913.1| DNA-directed RNA polymerase subunit B [Encephalitozoon hellem ATCC
50504]
gi|392998070|gb|AFM97932.1| DNA-directed RNA polymerase subunit B [Encephalitozoon hellem ATCC
50504]
Length = 1046
Score = 507 bits (1306), Expect = e-140, Method: Compositional matrix adjust.
Identities = 322/897 (35%), Positives = 477/897 (53%), Gaps = 131/897 (14%)
Query: 37 HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
CR+ ++Y GK+ V Y D+ + ++F G FP+M++++ CHL+ +S V
Sbjct: 68 ECRERGLTYRGKIAVRVSLFY-DSKHVMTEDKFA-GYFPIMVRSKLCHLKNVESMNRVGE 125
Query: 97 KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQ 156
EE E+GGYFI+NG+++ R I+ K+N+ + + R + +T V +RCV KD+
Sbjct: 126 DEE--EIGGYFIVNGIDKFVRLGIIQKRNHIFAFKQ---RKKESFFTGYGVSMRCVGKDE 180
Query: 157 SSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKE 216
LYY +G+V + + + +L P+ ++L+ALV+T D E+F
Sbjct: 181 IGHLNSLYYCTDGNVIIKIFYKRSTFLFPLVLILRALVNTTDEELFE------------- 227
Query: 217 KGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIR 276
A+G ++ +L + ++ +R +CL +IG F VID + AE V+
Sbjct: 228 --ALGG---GDKAIHLLKCFAEYNVFSRTECLDYIGSRFLAVID---VGTKVGAAEEVLS 279
Query: 277 DYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKL 336
Y+ HL+ N DKFN L+ +KLFS V++ D+ DS N E+L +++ ++++K+
Sbjct: 280 KYVASHLSSNLDKFNFLVLAAKKLFSFVNNEIAEDDFDSSGNHELLTVTQILSSFIRDKI 339
Query: 337 EDWL-------RKG--------KKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTS 381
E+++ RK +KL +DE +G D +L IK+V +K P IG
Sbjct: 340 EEYMKLFRIICRKAYFKNAGGKRKLEEDEGVEDGLYEDKLDLTEIKEVFKKTPI-SIGHK 398
Query: 382 IETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKL 441
I+ L G + D+ Q+ G+ + AER+NF ++++ R+++RG+ + L T VRKL
Sbjct: 399 IDMFLYGGNAVFSSCSDILQKTGFVITAERINFYKYLTNLRSINRGSHISSL-VTDVRKL 457
Query: 442 LPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGM 501
PESWGF+CPVHTPDG PCG+L HM V S + DF + G+
Sbjct: 458 RPESWGFICPVHTPDGAPCGILLHMAKGAEVVS------KVEDFDT------DIFFEFGV 505
Query: 502 IPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYV 561
+P++ G + VL+DGR++G S I +V LR KV ++L++ V
Sbjct: 506 VPAI-----RGAKMDVPVLVDGRIIGSTSSPSI--LVRMLREYKVK------NNLKIEIV 552
Query: 562 PLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDG-GDGG 620
+P + +F S +F R V N L SEE IG EQVF+ I +G G+G
Sbjct: 553 YSEGPKMFPSVCVFNSVGRFARKVMNRKLNSEE-----WIGIMEQVFLSIDVEEGKGEG- 606
Query: 621 RRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQ 680
+ EI T +L ++A LTPYSDHNQSPRNMYQCQMAKQ +G +K R D
Sbjct: 607 -------DYYEIDKTNILGILAELTPYSDHNQSPRNMYQCQMAKQAIGIPAYNIKTRTDS 659
Query: 681 KLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMC 740
+Y + Q+PIVRT Y + YP G N +VAVL+YT YDMEDA++++K+S+DRG+
Sbjct: 660 SMYTVNYLQSPIVRTKGYDL--VKNYPVGINCMVAVLSYTAYDMEDALVISKNSIDRGLF 717
Query: 741 HGQIYQTETIDLSDD---------GNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMI 791
G IY+TE + L G ++++G L+R YV Q
Sbjct: 718 TGYIYKTEKVSLEKGRYFTHLLPVGERIEKGLVLYR------------------YVDQ-- 757
Query: 792 HPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIG 851
G Y S Y + +E +D V V +S + A R RNP IG
Sbjct: 758 -EGREYESKYFE------------AEGGVIDSVRVFDNDSGE--RCATFTIRIVRNPSIG 802
Query: 852 DKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
DKFSSRHGQKGVCS WP +DMPF+ +G PD+IINPHAFPSRMTI ML+ES+A K
Sbjct: 803 DKFSSRHGQKGVCSMNWPTVDMPFTE-SGYVPDIIINPHAFPSRMTIGMLIESIAGK 858
>gi|66362272|ref|XP_628100.1| RNA polymerase 1 beta subunit [Cryptosporidium parvum Iowa II]
gi|46227419|gb|EAK88354.1| RNA polymerase 1 beta subunit [Cryptosporidium parvum Iowa II]
Length = 1281
Score = 506 bits (1304), Expect = e-140, Method: Compositional matrix adjust.
Identities = 347/982 (35%), Positives = 493/982 (50%), Gaps = 128/982 (13%)
Query: 37 HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
H R ISY+ L + E Y + V + G P+M+K+ CHL G +++LV
Sbjct: 89 HARNGHISYSAPLWLEFE-GYNSSLDTVSKHSIYAGTIPIMVKSSSCHLFGLGTKELVEK 147
Query: 97 KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQ 156
E+ E+GGYFI+NG ERV R VI + NYP+ + R F ++ AV++R +R D
Sbjct: 148 GEDPNEVGGYFIINGNERVIRYVIQQRCNYPIGLKRPRFATFDSFGSEYAVLMRSLRDDG 207
Query: 157 SSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY----DEK 212
+S LY + L +E+L+P +L A+ D + Y DE
Sbjct: 208 TSTANYLYGTSDHQCIYRVLLNRQEWLIPFWPLLMAVGSIYDSNVLRSKILQYCNPKDEN 267
Query: 213 YKKEKGAVGSPLVSERVKIILAEVQDLSLTTR---------LQCLQHIGEH-FQPVIDGL 262
+ + + AE +S + + L IG ++ V L
Sbjct: 268 LFNTINMLTLEWGLDNSVGVDAEFNSVSFGNKGPGDTDILENRYLHQIGRLVWEGVAFHL 327
Query: 263 QSESYYAVA-ETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEI 321
S A +I +Y+ VHL + N K LI M KL L + ++ DS QE+
Sbjct: 328 PPGSLLQEAGRFLIDNYVLVHLEEWNAKLECLILMFIKLIKLQLNEIREESIDSFAYQEL 387
Query: 322 LLPGHLITIYLKEKLEDWLRKGKKLIQDEI-----ENNGKKFDFFNL----ANIKKVMEK 372
L PG+L + K+ + +L+K + EI E N + + NL A K V+ K
Sbjct: 388 LSPGNLYSALFKDAIFSFLQKIRSTYLIEIRSKSGEKNKESKNGVNLLRDTAYFKSVLSK 447
Query: 373 NPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAG 432
N S I ++ + TG + T T LDLQQ +G+TV A+RLNF RF+S FRAVHRG F
Sbjct: 448 NIS-MIPKRLQYFMATGNVKT-TQLDLQQLSGWTVVADRLNFNRFLSHFRAVHRGQFFTT 505
Query: 433 LRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSI 492
++TT VRKL E+WGFLCPVHTPDGEPCGLL H++ C + +DS+ +R ++R +
Sbjct: 506 MKTTDVRKLTGETWGFLCPVHTPDGEPCGLLLHLSQDCIPVTQWDSQETLR---RLRNYL 562
Query: 493 LRVLI----GVGMIPSL-------------PKLVKSGPPAVLSVLLDGRVVGVIPSSEIE 535
+ I G+G + S P L KS P V+LDGRV+ IP +
Sbjct: 563 ISHGISCDDGLGSLSSTWGIESSSRDDLYSPDLTKSIP-----VMLDGRVLFHIPREDFM 617
Query: 536 KVVAHLRRLKV-SAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEE 594
LR LK + SV+P E+ VP G + G+Y+FT+P + VRP+ ++ E
Sbjct: 618 VWENKLRTLKWQTNPSVLPVHAEIACVPPD-SGMFSGIYIFTAPGRLVRPIMHL-----E 671
Query: 595 SQNIELIGPFEQVFMEIRCPD----------------------GGDGGRRNAFPA----- 627
+ ++ IGP Q +M I + + +N A
Sbjct: 672 TAQVDWIGPLGQPWMNIGVTEEETRKSTKLLEIQKRLIGISDTESEEQLKNDLKALKKLI 731
Query: 628 --------------THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQA 673
TH E+HP+ +LSV A+L PY+ HNQSPRNMYQCQM KQTMG
Sbjct: 732 KDNDRVLSSVPVNYTHMELHPSTILSVTASLIPYAHHNQSPRNMYQCQMLKQTMGTPCLN 791
Query: 674 LKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKS 733
+R D K+Y L TPQ P + T Y+ +G EYPTGTNAIVAV++Y+GYDMEDAMILNKS
Sbjct: 792 HPYRTDNKMYRLLTPQEPTIITKGYSSFGFSEYPTGTNAIVAVMSYSGYDMEDAMILNKS 851
Query: 734 SVDRGMCHGQIYQTETIDLS-DDGNKVDRGQKLFRRN--KDAKSLHSVIDSDGLPYVGQM 790
S DRGM H +Y+T+ I + K + F N D + + + +DGLP +GQ
Sbjct: 852 SYDRGMFHACVYKTKIISAAPPSATKKSDAESYFFHNIGPDGELVVKELSADGLPNIGQR 911
Query: 791 IHPGEPYCSIYDKTTNSWRTNSR----KGSESVFVDY-------VAVDMKNS-------- 831
+ G P C + + +N+ E FV+ ++++++
Sbjct: 912 LTKGSPICRVERIGSGGGPSNATIQTYHDDEVAFVEKINRIASGISIELQQDSLSGGGGD 971
Query: 832 -----KNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLI 886
+K +I+ R RNP++GDKF+SRHGQKG+ S LWP +MPFS +GM PD++
Sbjct: 972 GASSSSGYGEKVSIKLRIVRNPMVGDKFASRHGQKGILSMLWPQENMPFSE-SGMVPDIL 1030
Query: 887 INPHAFPSRMTIAMLLESVAAK 908
NPH FPSRMTI MLLES+ K
Sbjct: 1031 FNPHGFPSRMTIGMLLESMGGK 1052
>gi|449666447|ref|XP_002161911.2| PREDICTED: DNA-directed RNA polymerase I subunit RPA2-like [Hydra
magnipapillata]
Length = 1044
Score = 504 bits (1299), Expect = e-140, Method: Compositional matrix adjust.
Identities = 314/948 (33%), Positives = 477/948 (50%), Gaps = 180/948 (18%)
Query: 10 EPLRELVRHHIESFDYMLDEGLSEMFD--------------------------------- 36
+ L+E ++ HIESF+Y+L+ GL+E
Sbjct: 26 KALQEFIQPHIESFNYILENGLNEAVKLIIPQEFELPDGRRAEISILDCSIGTPVVDDNN 85
Query: 37 -----------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHL 85
CR+ +Y KL ++++ V + + Q PVM+K++ C L
Sbjct: 86 FTSKTQRVYPAECRERHCTYKAKLTVTLQWKINGVLQGSVTK--SIAQVPVMVKSKNCSL 143
Query: 86 QGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDK 145
+L+ EEA E GGYFI+NG+E++ R +++ ++NYP++MVR S++ R +T+
Sbjct: 144 ANLTPAQLIEKHEEAEEWGGYFIVNGIEKILRMLVMQRRNYPLAMVRKSWKSRGPLFTEF 203
Query: 146 AVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHL 205
V IR ++KDQS L+YL +GS L F Q +++ +P+ ++LKAL +D I+ L
Sbjct: 204 GVSIRSIQKDQSGNINVLHYLTDGSFTLSFIHQKEQFFVPLALILKALTANSDQYIYKQL 263
Query: 206 TCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSE 265
G + V +L + D +L ++ L+++G F+ ++ +
Sbjct: 264 L----------HGKEDDIFFKDVVVNMLRTLNDENLLSQNDVLKYMGMRFRIKVNLPEWT 313
Query: 266 SYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPG 325
S +A+ + + + VHL DKFNLLI+M QKLF+L + +++PD+ N E+LL G
Sbjct: 314 SDEDIAKYMFQTCVLVHLEKITDKFNLLIYMTQKLFALANDKCAAESPDNPMNHEVLLGG 373
Query: 326 HLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETM 385
H + LK+ +E+
Sbjct: 374 HTYLLVLKQ-----------------------------------------------MESF 386
Query: 386 LKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPES 445
L TG + +++GL L Q G +V A++LNF+R++S FR +HRGA F +RTT+VRKLLPE+
Sbjct: 387 LATGNILSKSGLGLMQATGMSVVADKLNFMRYLSHFRCIHRGAFFTEMRTTTVRKLLPEA 446
Query: 446 WGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTS-ILRVLIGVGMIPS 504
WGFLCPVHTPDG PCGLLNH+ + C+V + +K TS ++++L+ +GM
Sbjct: 447 WGFLCPVHTPDGAPCGLLNHLAAACKVEN-----------TKYPTSDLIKLLVKLGM--Q 493
Query: 505 LPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLS 564
L + SVLLDG VVG + S E+V LR K ++P +E+ ++P +
Sbjct: 494 LCDMDLGLASDSYSVLLDGCVVGRLRSHISEEVCKKLRVFKALQKEMVPPTMEIIFIPRT 553
Query: 565 -LGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRN 623
Y G++LFT + +RPVRN+ + +E IG FEQV+M+I +
Sbjct: 554 KFASQYEGIFLFTDVARMIRPVRNLL-----TNTVEYIGSFEQVYMDIAVY----SDEIH 604
Query: 624 AFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLY 683
A TH E++ MLS +A LTPYSD NQSPRNMYQCQM KQTMG QALK R+D K+Y
Sbjct: 605 APTTTHMELNDCAMLSELATLTPYSDFNQSPRNMYQCQMGKQTMGTPCQALKHRSDNKMY 664
Query: 684 HLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQ 743
+Q Q N + D+E+ I + R
Sbjct: 665 KIQVGQIMSFEKNFFRLL--------------------VDLEEKYIDSSGCAFR------ 698
Query: 744 IYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHS-VIDSDGLPYVGQMIHPGEPYCSIYD 802
F ++++ + S ++ DGLP +G+ + G+PY S Y
Sbjct: 699 ----------------------FGSDEESSTFKSGLLGKDGLPPIGRFMQHGDPYYSYYH 736
Query: 803 KTTNSWRTNSRKGSESVFVDYVAV--DMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQ 860
++T K E ++D + + K + L K +I+ R RNPIIGDKF+SRHGQ
Sbjct: 737 IINGEYKTVKYKHMEPAYIDDIKILGSDKGDREL-LKVSIKLRIQRNPIIGDKFASRHGQ 795
Query: 861 KGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
KG+ S WP +MPF+ +GM PD+I NPH FPSRMTI M++ES+A K
Sbjct: 796 KGILSVKWPAENMPFTE-SGMIPDIIFNPHGFPSRMTIGMMIESMAGK 842
>gi|299115649|emb|CBN75850.1| conserved unknown protein (Partial) [Ectocarpus siliculosus]
Length = 1050
Score = 503 bits (1294), Expect = e-139, Method: Compositional matrix adjust.
Identities = 301/802 (37%), Positives = 439/802 (54%), Gaps = 93/802 (11%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR+ ++Y G L+ D+ +Q D VVR + G PVM+ +RRCHL+G +L +
Sbjct: 86 CRERGLTYHGALLVDLCYQVGDG--DVVRTQKRAGDCPVMVGSRRCHLRGHGPARLTRGR 143
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
EEA EMGGYFI+ G+ERV R + +PK+NY ++ R +F+DR +GY++K V++RC RKDQS
Sbjct: 144 EEAGEMGGYFIVRGIERVIRLLQVPKRNYAHAISRGTFKDRGQGYSEKGVMMRCARKDQS 203
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
++T+ L+Y+ G L F ++ +E+L+PV I+LKAL DT+D EI + +
Sbjct: 204 TLTVTLHYISTGGATLRFSVRKQEFLVPVVIILKALRDTSDREIHERVL----------Q 253
Query: 218 GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRD 277
G + ++ V+++L + + L +R++ L +G F+ V+ + + + + VI
Sbjct: 254 GQKDNTFLAAHVEVLLRDGKRWGLHSRMESLAFLGSTFRTVLQAPATATDIELGKKVIDR 313
Query: 278 YIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLE 337
++N L+ LF + LP I +++
Sbjct: 314 VETGWCWPWRCRWNWPRCCLRALF-------------------VSLPAVRQLIGRDARMD 354
Query: 338 DWLRKGKKLIQ-DEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTG 396
+ K ++Q + ++ K D F A +G + T L TG + + +G
Sbjct: 355 ----QAKAVMQVRDAKHMAKYLDRFGSA-------------VGQGMSTFLSTGNVISTSG 397
Query: 397 LDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPD 456
LDL Q +G+T+ AER+NFLR+++ FR+VHRG F ++TT+VRKLLPESWGFLCPVHTPD
Sbjct: 398 LDLMQVSGFTIVAERINFLRYLAHFRSVHRGQFFTTMKTTAVRKLLPESWGFLCPVHTPD 457
Query: 457 GEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKL---VKSGP 513
G PCGLLNH+ + C+V G ++ S+ +L+ +G+ P+ S P
Sbjct: 458 GSPCGLLNHLATACKVVC---GGGKAPPPAESPLSLESLLVRLGVAPAGTGAGDGALSLP 514
Query: 514 PAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKV------------SAASVIPDDLEVGYV 561
+ L VL+DGRVVG + +++ A LRRLKV + LEVG+V
Sbjct: 515 SSFLPVLVDGRVVGGGSEATLKRAAAELRRLKVVAAAGGGAAGKGGGGGGVDPTLEVGWV 574
Query: 562 PLSLGGA--YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDG 619
P GGA YPGL+L + + RPV ++ +S +E IGP Q FMEI C D
Sbjct: 575 PPMKGGAGPYPGLFLNSEGARMCRPVLHL-----QSGRMEWIGPMAQQFMEIACL--ADD 627
Query: 620 GRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALK-FRA 678
R TH E+ PT MLS+VA+LTP+SD+NQSPRNMYQCQM KQTMG L R
Sbjct: 628 VRPGL--TTHRELDPTNMLSLVASLTPFSDYNQSPRNMYQCQMGKQTMGTPAHCLTPHRT 685
Query: 679 DQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRG 738
D K+Y + PQ IV+T + +Y +D+YP GTNA+VAV++YTG+DMEDAMILNKSS +RG
Sbjct: 686 DNKMYKVLFPQAAIVQTRRHGEYQLDDYPQGTNAVVAVISYTGFDMEDAMILNKSSFERG 745
Query: 739 MCHGQIYQTETIDLSDDGNK--------------VDRGQKLFRRNKDAKSLHSVIDSDGL 784
H + +T +DL D K V G A LH + DGL
Sbjct: 746 FGHASVLKTFAVDLRDVAGKGAGPAAVARLKFCNVKPGSVGAGGAAAATKLHEGLGWDGL 805
Query: 785 PYVGQMIHPGEPYCSIYDKTTN 806
P VG + PG+ + D+ T
Sbjct: 806 PMVGSWVQPGDALYCVVDELTG 827
>gi|397574467|gb|EJK49226.1| hypothetical protein THAOC_31929 [Thalassiosira oceanica]
Length = 878
Score = 501 bits (1291), Expect = e-139, Method: Compositional matrix adjust.
Identities = 287/680 (42%), Positives = 390/680 (57%), Gaps = 85/680 (12%)
Query: 296 MLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNG 355
ML+KL+S DN DSLQNQEILLPGHL+ ++KEK ++ L +K + E+ N+
Sbjct: 1 MLRKLYSFAAGDCGVDNADSLQNQEILLPGHLLCTFVKEKFDECLESMRKGLLREMRNHS 60
Query: 356 KKFDFFNLANI-KKVMEKN--PSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERL 412
+ + A K++++ S IG + L TG + + TGLDL Q +GYT+ AE+L
Sbjct: 61 QFLNNVGQAKWWSKIVDRYGISSGGIGAKVSHFLSTGNIISSTGLDLMQVSGYTIVAEKL 120
Query: 413 NFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRV 472
NFLRF + FR+VHRG F ++TT+VRKLLP+ WGFLCPVHTPDG PCGLL+HM C+
Sbjct: 121 NFLRFCAHFRSVHRGQFFMEMKTTAVRKLLPDQWGFLCPVHTPDGGPCGLLSHMALKCQC 180
Query: 473 ASYYDSR--GNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAV-----LSVLLDGRV 525
++ + G++ D S++ L+G G+ P+ L VL+DGRV
Sbjct: 181 MAFPAQKEGGDLEDLSEL-------LVGWGVRPTGTGGESGDGSGTSSHTDLPVLVDGRV 233
Query: 526 VGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSL-GGAYPGLYLFTSPPKFVRP 584
VG + + LR LKV+ +P LEV ++P + GG YPGL+LFT + VRP
Sbjct: 234 VGGASVKLCKSIAFQLRELKVAEKPTVPQTLEVAFIPPGMKGGPYPGLFLFTVAARVVRP 293
Query: 585 VRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRNAFPATHEEIHPTGMLSVVAN 643
V + E IGP EQ FM+I C P+ G TH+E+ P MLS++A+
Sbjct: 294 VLQ-----RATGRTEYIGPMEQPFMDIACLPEDIREGI-----TTHQELDPANMLSLIAS 343
Query: 644 LTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGI 703
LTP+SD+NQSPRNMYQCQM KQTMG +L +R+D KLY +QTPQ P+V+T + +Y +
Sbjct: 344 LTPFSDYNQSPRNMYQCQMGKQTMGTPGHSLPYRSDNKLYKIQTPQAPLVQTAVHGEYKM 403
Query: 704 DEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSD--------- 754
DEYP GTNA+VAVL+YTG+DMEDAMILNKSS +RG H +Y+T +D+++
Sbjct: 404 DEYPNGTNAVVAVLSYTGFDMEDAMILNKSSYERGFGHASVYKTVKVDIAEEMSMAVNKG 463
Query: 755 -DGNKVDRGQKLFR-----RNKDAK------SLHSVIDSDGLPYVGQMIHPGEPYCSIYD 802
D +K+ G K R N+ K ++ ++ DGLP VG + G P + D
Sbjct: 464 ADKDKIKLGNKTKRVRVPPENEGDKPTVKYEKMYPNLEDDGLPPVGAWVKEGHPLYCLAD 523
Query: 803 KTTNSWRTNSRKGSESVFVDYV--------AVDMKNSKNLPQKA-NIRFRHTRNPIIGDK 853
NS K E V + + SK+ ++ ++ R RNP+IGDK
Sbjct: 524 DGPNSGHVGKHKEKEKACVQNIRRLNMSGGQAGGRGSKDANKEGLSVTLRFPRNPVIGDK 583
Query: 854 FSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLII-------------------------N 888
FSSRHGQKGV S LWP DMPFS +G+ PD+II +
Sbjct: 584 FSSRHGQKGVLSILWPQTDMPFS-ESGISPDVIISKLSLVALASLSKRSMSHFSRLFELD 642
Query: 889 PHAFPSRMTIAMLLESVAAK 908
PHAFPSRMTI ML+ES+A K
Sbjct: 643 PHAFPSRMTIGMLIESMAGK 662
>gi|195997459|ref|XP_002108598.1| hypothetical protein TRIADDRAFT_51662 [Trichoplax adhaerens]
gi|190589374|gb|EDV29396.1| hypothetical protein TRIADDRAFT_51662 [Trichoplax adhaerens]
Length = 780
Score = 500 bits (1288), Expect = e-138, Method: Compositional matrix adjust.
Identities = 278/636 (43%), Positives = 383/636 (60%), Gaps = 68/636 (10%)
Query: 275 IRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKE 334
+R+ I VHL+ N DKFNLLI+M++KL+++ + ++ DS NQEILL GH+ ++ LKE
Sbjct: 9 LRNCIAVHLDRNEDKFNLLIYMIRKLYAVANGECQIESQDSPMNQEILLGGHMYSMVLKE 68
Query: 335 KLEDWLRKGKKLIQDEI-ENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLAT 393
KLE WL + K LI + + N +K + V N I +E L TG L
Sbjct: 69 KLELWLSRVKNLILKYMAKTNDEKLEN------AIVRAANNGTNIPNQLEYFLATGNLVA 122
Query: 394 QTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVH 453
+ L L Q AGY + A+RLNF+RF+S FR+VHRG+ F +RTT+VRKLLPE+WGFLCPVH
Sbjct: 123 RADLGLMQVAGYVLVADRLNFMRFVSHFRSVHRGSFFTEMRTTAVRKLLPEAWGFLCPVH 182
Query: 454 TPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGP 513
TPDG PCGLLNH+ ++C+V + + D +K+ ++ L +GM+ L++
Sbjct: 183 TPDGAPCGLLNHLAASCKVVT------KMSDTTKLVST----LYELGMLSLSDPLIEYSS 232
Query: 514 PAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLY 573
V V+LDG++VG I +++ LR LK++ ++ E+ V + G Y GLY
Sbjct: 233 AHV--VILDGKIVGYIQKEIGKEIADKLRYLKINNMDMVDPSTEIALVHDGISGLYNGLY 290
Query: 574 LFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIH 633
LFTSP + +RPV N+ L Q E+IG FEQVFM+I C + A TH+E+
Sbjct: 291 LFTSPARMIRPVTNLRL-----QKQEMIGTFEQVFMDI-CITAEEA---YAEVTTHQELS 341
Query: 634 PTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIV 693
P MLS +A LTP+SD NQSPRNMYQCQM KQTMG +Q+ K+R+D KLY +Q
Sbjct: 342 PCSMLSALARLTPFSDFNQSPRNMYQCQMGKQTMGTPIQSFKYRSDNKLYRIQ------- 394
Query: 694 RTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLS 753
GYDMEDAMILNKSSV+RG H IY++E I+L+
Sbjct: 395 ---------------------------GYDMEDAMILNKSSVERGFAHATIYKSEVINLN 427
Query: 754 DDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSR 813
+K G ++F + + ID DGLP +G +++ G+PY + +T+ +
Sbjct: 428 ---SKTADGLEIFGQTPGTTDSDN-IDLDGLPKIGSILNSGDPYYCTLNLSTSQCVVHYY 483
Query: 814 KGSESVFVDYVAVDMKNSKNLP-QKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDID 872
+G E VD V + +S P Q+ ++FR RNPIIGDKFSSRHGQKGVCSQLWP +
Sbjct: 484 RGQEQGIVDDVKLLGSDSGRKPLQRICVKFRIERNPIIGDKFSSRHGQKGVCSQLWPIEN 543
Query: 873 MPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
MPF+ +GM PD++ NPH FPSRMTI M++ES+A K
Sbjct: 544 MPFTE-SGMTPDILFNPHGFPSRMTIGMMIESMAGK 578
>gi|313246967|emb|CBY35812.1| unnamed protein product [Oikopleura dioica]
Length = 1185
Score = 499 bits (1286), Expect = e-138, Method: Compositional matrix adjust.
Identities = 294/902 (32%), Positives = 482/902 (53%), Gaps = 79/902 (8%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CRQ K YT + L +G V + + Q P+M+ + +CHL+G ++LV+ K
Sbjct: 109 CRQKKTDYTAPVHVTFNLINLSSGESQVVTKKDLLQMPLMVMSSKCHLRGLSPEELVARK 168
Query: 98 EEAAEMGGYFILNGLERVFRSVIL--PKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKD 155
E+ E+GGYFI +G E+V R + + ++N+P+ + R+ ++ RREGYTD ++IRC+
Sbjct: 169 EDHFEIGGYFIASGNEKVIRLLNMNRTRRNFPLGLRRNGWKRRREGYTDAGLMIRCMDNW 228
Query: 156 QSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKK 215
+ + + ++ + + F++Q + + +P+ V++AL DLEI+ ++
Sbjct: 229 ERTSNMNVHVTKTNEMEVVFYIQKQLFHVPMMTVVRALTSWTDLEIYREFMQTMSDEPNY 288
Query: 216 EKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVI 275
+ +R+ L ++Q LT + +G+ F+ +S + +
Sbjct: 289 DSAV-------KRMLKKLVKIQHHFLTQ----AKFLGQSFRIFDICPAWKSDVEAGQAFL 337
Query: 276 RDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEK 335
+ Y ++LN++ DK M +K F + +T +D+ DS ++ ++LLPGHL E
Sbjct: 338 KRYCLIYLNNDEDKVRAFALMARKAFRISHNTCATDDIDSPESHDVLLPGHLFQSMTLEF 397
Query: 336 LEDWLRKGKKLI-----------QDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIET 384
E + R ++ DE+ N F + N+ + +
Sbjct: 398 FESYQRSVSMIMAKEYSKQLEKGNDEVGQNMLSFAINKIGNMNQ------------HFKY 445
Query: 385 MLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPE 444
++ TG L T GL +QQ AG V AE++NF RF S FR +HRGA F +R TS RKL
Sbjct: 446 LIATGNLKTNDGLGMQQLAGIVVGAEKINFARFYSHFRCIHRGAFFMEMRATSPRKLSTA 505
Query: 445 SWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPS 504
+WGF+CPVHTPDG PCGLLNH+ T R+ ++ + + +L+ +G+ P
Sbjct: 506 AWGFICPVHTPDGPPCGLLNHLAHTVRINVKRENTAKLEE----------LLLEIGVKPC 555
Query: 505 LPKLVKSGPPAVLSVLLDGRVVGVIPSS-EIEKVVAHLRRLKVSAASVIPDDLEVGYVPL 563
K + P V++DG+ +G I + + V +LRRLK S++ +PD LE+ + P
Sbjct: 556 SIKANEFDVP----VIIDGKQIGWIANGWRAQAVEKYLRRLKTSSSDRVPDTLEIVHCPA 611
Query: 564 --SLGGA--YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDG 619
+ G A +PG+ L T P + RP+ N+ IE+IG EQV++ +
Sbjct: 612 PENKGEAVMFPGINLLTEPARMYRPLLNL-----REDKIEMIGIMEQVWLHVTV-----N 661
Query: 620 GRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRAD 679
+ + ++E++P +LS +A ++P+S+ N R + QCQMAKQT G+ L R+D
Sbjct: 662 QKESHELTEYQELYPAALLSELACMSPFSNMNAGARVILQCQMAKQTFGWPSYTLNHRSD 721
Query: 680 QKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGM 739
K+Y + TPQ P+VR++ + +G+D+YP GTN ++AV++YTGYD+EDA ++K S +RGM
Sbjct: 722 NKMYRILTPQEPLVRSHLHDSWGMDDYPLGTNVMIAVISYTGYDLEDATCVSKMSRERGM 781
Query: 740 CHGQIYQTETIDLSDDGNKVD--RGQKLFRRNK-DAKSLHSV-------IDSDGLPYVGQ 789
+G IY+T+ +DL D + G +L R++ D L + +D DGLP+ G
Sbjct: 782 MYGTIYKTKMVDLQDTAQSMGYRSGLRLGCRDRFDPNELKAYRKIAGDKLDIDGLPFPGG 841
Query: 790 MIHPGEPYCSIYDKTTNSWRTNSRKG-SESVFVDYVAV--DMKNSKNLPQKANIRFRHTR 846
+ + Y Y++ + +E V+ V V + + + Q+A I+FR R
Sbjct: 842 IFTYQDAYYCYYNEHEQKYSVGKYDSHAEDAIVESVRVFTNKRPQEGGFQQAAIQFRIAR 901
Query: 847 NPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVA 906
IGDK +SRHGQKG+CS+LW DMP++ G+ PDLI NPH FPSRMT+ M++E +A
Sbjct: 902 PINIGDKMASRHGQKGICSRLWATTDMPWTE-NGIVPDLIFNPHGFPSRMTVGMMIEFIA 960
Query: 907 AK 908
K
Sbjct: 961 GK 962
>gi|300708202|ref|XP_002996285.1| hypothetical protein NCER_100631 [Nosema ceranae BRL01]
gi|239605574|gb|EEQ82614.1| hypothetical protein NCER_100631 [Nosema ceranae BRL01]
Length = 1054
Score = 499 bits (1285), Expect = e-138, Method: Compositional matrix adjust.
Identities = 319/889 (35%), Positives = 479/889 (53%), Gaps = 116/889 (13%)
Query: 39 RQAKISYTGKLMADVEFQYLDAGSPVVRERFN-FGQFPVMLKTRRCHLQGADSQKLVSLK 97
R +Y GK+ Y D ++ F G FP+M+K+ CHL D S+
Sbjct: 70 RLTNTTYKGKIFIKFSLFYDDK---LISSEFRPCGGFPIMVKSGYCHL--LDEPNPNSID 124
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
E+ ++GGYFI+NG++++ R I+ K+NYP ++ R + + YTD + IR V D+
Sbjct: 125 EDENDIGGYFIINGIDKLIRFHIMQKRNYPFALCRPQ---KNKNYTDNYIYIRSVGDDEL 181
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
L+Y ++G V F+ + E+ +P+ I+LKALV+T D EI+ L ++ Y
Sbjct: 182 GHVGYLHYSIDGDVFYRFFRRRNEFHIPIIIILKALVNTTDQEIYKMLN---NDIY---- 234
Query: 218 GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRD 277
+ + L + + +R +C+++IG F+ ++ +E A E ++
Sbjct: 235 -----------ITVALKKATKEEVFSRAECIEYIGARFKQSMNASTNEE--ACIE-ILDT 280
Query: 278 YIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLE 337
Y+ HL N DKFN LI+ ++KLFSLV + ++ DS + E+L L K+KLE
Sbjct: 281 YVCPHLTKNQDKFNFLIYSIKKLFSLVKGEIIPEDSDSPASHEMLTETQLFANIFKDKLE 340
Query: 338 DWLRKGK-KLIQDEIENNGKKFDFF--------NLANIKKVMEKNPSKQIGTSIETMLKT 388
D R K ++++ + NGK+ D+ +L N + +G + E+ L T
Sbjct: 341 DLKRSFKAQIMRTFLRKNGKRKDYEKNKEPILPSLENCMHAFKYLDCASVGRAFESFLST 400
Query: 389 GRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGF 448
G + Q D+ Q AG+++ AER+NF R+IS FR+++RG+ F +RTT VRKL ESWGF
Sbjct: 401 GNINIQNSSDILQSAGFSIMAERINFYRYISHFRSLNRGSFFQEVRTTGVRKLRSESWGF 460
Query: 449 LCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKL 508
CPVHTPDG PCGLL H+TS + ++ N D++ +L G+IPS +
Sbjct: 461 FCPVHTPDGTPCGLLTHLTSAASLVNF----TNNFDYN--------LLYSFGIIPSHRQF 508
Query: 509 VKSGPPAVLSVLLDGRVVGVI--PSSEIEKVVAHLRRLKVSAASVIPDDLEV-GYVPLSL 565
+ +SV +G ++G P K+ + R +S LE+ Y L L
Sbjct: 509 ING-----ISVFYNGLLIGYTFNPCDLTNKLRKYRRDNNLS--------LEIIHYSGLKL 555
Query: 566 GGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPD----GGDGGR 621
Y + ++ + + +RPV + +ES IE++G EQVF++I D
Sbjct: 556 ---YETVLIYNTVSRLIRPVLH-----KESGKIEMVGIMEQVFLDINLNDMTVYKDSPNI 607
Query: 622 RNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQK 681
F ++E+ + S+VA+LTP+S++NQSPRNMYQCQMAKQ+MG +K R D K
Sbjct: 608 SKCF--EYQEVDNQNIFSIVASLTPFSEYNQSPRNMYQCQMAKQSMGHPAHNIKTRNDSK 665
Query: 682 LYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCH 741
+Y L Q PIV+ Y+ + +YP G N IVAVL+YT YDMEDAM++NK S++RG+
Sbjct: 666 IYMLNYTQHPIVQNKKYSL--VQDYPLGLNCIVAVLSYTAYDMEDAMVINKGSMERGLFT 723
Query: 742 GQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIY 801
G +Y+ + I+L D LP VG I+ G+ +Y
Sbjct: 724 GYVYKVDKIELPKD-----------------------CCFSYLPDVGCKINTGD---ILY 757
Query: 802 DKTTNSWRTNSR--KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHG 859
T + S K S+ ++ +VD+ ++NL ANI+FR RNP IGDKF SRHG
Sbjct: 758 KYTDFGGKETSVLCKSSDGYIIE--SVDIFENENLC--ANIKFRIIRNPNIGDKFCSRHG 813
Query: 860 QKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
QKGVCS WP IDMPF+ +G+ PD+IINPHAFPSRMTI ML+ES+A K
Sbjct: 814 QKGVCSMHWPSIDMPFTE-SGIVPDIIINPHAFPSRMTIGMLIESMAGK 861
>gi|396081035|gb|AFN82654.1| DNA-directed RNA polymerase subunit B [Encephalitozoon romaleae
SJ-2008]
Length = 1046
Score = 498 bits (1283), Expect = e-138, Method: Compositional matrix adjust.
Identities = 319/898 (35%), Positives = 476/898 (53%), Gaps = 135/898 (15%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR+ ++Y GK++A V Y D + ++F G FP+M++++ CHL+ ++ V
Sbjct: 69 CRERGLTYKGKMVARVSLFY-DNKHVMTEDKFA-GYFPIMVRSKLCHLRNVENMNKVG-- 124
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
E+ E+GGYFI+NG+++ R I+ K+N+ + + R + T V IRCV KD+
Sbjct: 125 EDEGEVGGYFIVNGIDKFIRLGIIQKRNHIFAFKQ---RKKENFLTGYGVSIRCVGKDEI 181
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
LYY +G+V + + + +L P+ ++L+AL++T D E+F
Sbjct: 182 GHLNSLYYCTDGNVIIKIFYRRSTFLFPLVLILRALINTTDEELFE-------------- 227
Query: 218 GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID-GLQSESYYAVAETVIR 276
A+G E+ +L + ++ +R +CL +IG F I+ G + E+ A+ ++
Sbjct: 228 -ALGG---GEKAIHLLKCFAEYNVFSRAECLDYIGSRFSAAINVGTKVEA----AKELLS 279
Query: 277 DYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKL 336
Y+ HL N DKFN L+ +KLFS VD+ V D+ DS N E+ +++ ++K+K+
Sbjct: 280 KYVASHLTSNLDKFNFLVLAAKKLFSFVDNEIVEDDFDSPGNHELFTVTQVLSSFIKDKI 339
Query: 337 EDWLR--------------KGKKLIQDEIENNGKKF-DFFNLANIKKVMEKNPSKQIGTS 381
E+++R GK+ ++ + E + D +L+ IK++ +K P IG
Sbjct: 340 EEYMRLFPIIYKKTYFKDGSGKRKLEKDSEVEDDLYEDKLDLSKIKEIFKKTPI-NIGQK 398
Query: 382 IETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKL 441
++ L G + D+ QR G+ + AER+NF R++ R+++RG+ + L T +RKL
Sbjct: 399 LDLFLYGGSTVLTSCSDILQRTGFVITAERINFYRYLCNLRSINRGSYISSL-VTDIRKL 457
Query: 442 LPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGM 501
PESWGF+CPVHTPDG PCG+L HM V S DF + VL G+
Sbjct: 458 RPESWGFICPVHTPDGAPCGILLHMAKGAEVVS------KAEDFD------IDVLFEFGV 505
Query: 502 IPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYV 561
+P V G + VL+DG+V+G +S V LR KV ++L++ V
Sbjct: 506 VP-----VIRGVRMDVPVLVDGKVIG--STSSPHTFVRMLREYKVK------NNLKIEIV 552
Query: 562 PLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDG-GDGG 620
+P + +F S +F R V N L SEE IG EQVF+ I G G+G
Sbjct: 553 YSEGPKMFPSVCVFNSMGRFTRKVMNRRLNSEE-----WIGIMEQVFLNIDVEKGKGEG- 606
Query: 621 RRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQ 680
+ EI T +L ++A LTPYSDHNQSPRNMYQCQMAKQ +G +K R D
Sbjct: 607 -------DYYEIDKTDILGILAGLTPYSDHNQSPRNMYQCQMAKQAIGLPAYNIKARVDS 659
Query: 681 KLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMC 740
+Y + Q+PIVRT Y + +YP G N +VAVL+YT YDMEDA++++K+S+DRG+
Sbjct: 660 SMYTINYLQSPIVRTKGYDL--VKDYPVGVNCMVAVLSYTAYDMEDALVISKNSIDRGLF 717
Query: 741 HGQIYQTETIDLSDD---------GNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMI 791
G +Y+TE + L G ++RG L+R YV Q
Sbjct: 718 TGYVYKTEKVSLEKGHYFTYLLSVGKGIERGSVLYR------------------YVDQ-- 757
Query: 792 HPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQK-ANIRFRHTRNPII 850
G Y S Y + +E +D V V ++ ++ A R RNP I
Sbjct: 758 -SGREYESKYYE------------AEGGIIDSVRV---FDNDIGERCATFTIRIVRNPSI 801
Query: 851 GDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
GDKFSSRHGQKGVCS WP +DMPF+ +G PD+IINPHAFPSRMTI ML+ES+A K
Sbjct: 802 GDKFSSRHGQKGVCSMHWPTVDMPFTE-SGYVPDIIINPHAFPSRMTIGMLIESIAGK 858
>gi|449019344|dbj|BAM82746.1| RNA polymerase I second largest subunit [Cyanidioschyzon merolae
strain 10D]
Length = 1175
Score = 492 bits (1266), Expect = e-136, Method: Compositional matrix adjust.
Identities = 313/862 (36%), Positives = 478/862 (55%), Gaps = 76/862 (8%)
Query: 64 VVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPK 123
V R + G+ P+++ ++ CHL G + V+L EE + GGYFI+NG+E++ R VI+P+
Sbjct: 168 VYRSERHLGEVPILVGSKLCHLDGLSPNERVALHEEEYDYGGYFIVNGVEKLLRMVIMPR 227
Query: 124 QNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSSV-TLKLYYLLNGSVRLGFWLQGKEY 182
N+ M + R + R E +T + +IRC R D+ V T L+YL G +RL F ++ +EY
Sbjct: 228 ANHVMVIARDANVRRGEHFTRFSAMIRCRRADRVRVVTNHLHYLQTGLLRLRFSVKRQEY 287
Query: 183 LLPVGIVLKALVDTNDLEIFNHLT----CC---YDEKYKKEKGAVGSPLVSERVKIILAE 235
LLP+G+VLKAL D D E+F LT CC DE + + ER + + E
Sbjct: 288 LLPLGLVLKALYDLADRELFLLLTMPSGCCGTNADENLR---------YIRERALMTVRE 338
Query: 236 VQDLS--LTTRLQCLQHIGEHFQPVIDGLQS--ESYYAVAETVIRDYIFVHLNDNNDKFN 291
+ L+ T+ L ++G F+ + S +S ++R Y+ +HL+D K
Sbjct: 339 LHVLTGGEGTQHAALSYLGARFRCLFPEYLSSDDSDERCGAFILRRYVLIHLDDPLQKLE 398
Query: 292 LLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEI 351
LL +M +KL + D+PDSL NQE+LLPG L ++L+EKL+D L + I ++
Sbjct: 399 LLAYMSRKLLHYMTGCLAEDDPDSLANQELLLPGQLWLLFLQEKLQDALFALRDEISRQL 458
Query: 352 ENNGKKFDFFNLANIKKVMEKNPSK-QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAE 410
+ + ++K + K S ++G + +L TG + + G +L Q +GY++ A+
Sbjct: 459 TQRANQGSLLDPDFVRKCVSKPRSGIRVGERMLHLLSTGTASLRDGAELLQTSGYSIIAD 518
Query: 411 RLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTC 470
R+NF RF+S F +VHRG F LRT+ RKL PE+WGF+CPVHTPDG PCG+LNH+T C
Sbjct: 519 RINFQRFLSHFYSVHRGQYFLNLRTSESRKLKPETWGFICPVHTPDGAPCGILNHLTRMC 578
Query: 471 RVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPA-VLSVLLDGRVVGVI 529
RV + D + +++ ++ IL L + L+ PPA VL+DGR+ G +
Sbjct: 579 RVVA--DQQQVLQEQKRIEW-ILETLPLEHPLAHNDALLM--PPANARPVLVDGRIRGYV 633
Query: 530 PSS-EIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNI 588
+ K++ + ++ D+E+ + +P + +F++P + +R V N+
Sbjct: 634 HGDVPLGKLLRQQKLEHFPQTEIV--DVEIPRL-------FPSVMVFSTPSRLMRSVWNM 684
Query: 589 SLPSEESQNIELIGPFEQVFMEIR-CPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPY 647
IE IG EQ+FM + C NA A H E+ T + S++A+ P+
Sbjct: 685 P-----QAGIEWIGTMEQLFMPVDLCKSQSMSRAGNA--AIHRELSATNIFSLLASFIPF 737
Query: 648 SDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDE-Y 706
S+ NQSPRN+YQCQM KQ MG R D K Y L TPQ P+V+ + + G + +
Sbjct: 738 SNMNQSPRNIYQCQMGKQAMGVPFHDWDRRFDTKSYRLLTPQQPLVQNRSEAQAGWSKVF 797
Query: 707 PTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLF 766
+ NA+VAV++YTGYDMED M++N++S+DRG+ HG IY E +DL D V + +
Sbjct: 798 GSSFNAVVAVISYTGYDMEDGMVINRASLDRGLAHGAIYGCEFVDL--DQLNVAKDARFS 855
Query: 767 RRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAV 826
R LP VG+ + PG SI + + +R SE+ +VD V +
Sbjct: 856 R----------------LPAVGERMTPGSVLYSIQGRRPHLYRN-----SETSYVDAVLL 894
Query: 827 DMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLI 886
+N + + IR R R P+IGDKF+SRHGQKGV S +WP DMP++ G+ PD++
Sbjct: 895 -AENQR----RVAIRTRTPRRPVIGDKFASRHGQKGVLSAIWPAEDMPYTS-DGIVPDIL 948
Query: 887 INPHAFPSRMTIAMLLESVAAK 908
NP+ FPSRMTI M++ES+A K
Sbjct: 949 FNPNGFPSRMTIGMIVESIAGK 970
>gi|160331424|ref|XP_001712419.1| rpa2 [Hemiselmis andersenii]
gi|159765867|gb|ABW98094.1| rpa2 [Hemiselmis andersenii]
Length = 1129
Score = 485 bits (1248), Expect = e-134, Method: Compositional matrix adjust.
Identities = 322/926 (34%), Positives = 498/926 (53%), Gaps = 97/926 (10%)
Query: 25 YMLDEGLSEMFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNF----GQFPVMLKT 80
++ ++ + ++ CR+ KI+Y+G + + + G +F+F G P+M+K+
Sbjct: 67 FLKNKKIKKIPRQCRELKINYSGDFLLGISSVFGKHG------KFSFIYKIGNIPIMVKS 120
Query: 81 RRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRRE 140
+C+L ++L+ + EE EMGGYFI+NG+E++ R +I+PK+N ++ R + R
Sbjct: 121 LKCNLYQQKKKQLIEMDEEEIEMGGYFIINGMEKMIRLLIVPKKNISFTLSRLTNTSRGN 180
Query: 141 GYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLE 200
T + R V + Q+S TL L+YL NGS+ +Q KE+ +PV +++K+L+ +D +
Sbjct: 181 LCTTLSCSFRSVDRLQTSRTLHLHYLTNGSIHARIIVQKKEFFIPVIMLIKSLMPISDKK 240
Query: 201 IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQD----LSLTTRLQCLQHIGEHFQ 256
IF LT + + K+K R++I +A ++D L T++ L+ +G+ F+
Sbjct: 241 IFESLT----KTFSKDKFY--------RIRI-MAMIKDAHETCDLKTQISVLEFLGKVFK 287
Query: 257 PVIDGLQSESYYA--VAETVIRDYIFVHLNDNND-KFNLLIFMLQKLFSLVDHTSVSDNP 313
LQ+ + A + E + ++I +HL ++ + K LL+FM+ KL S+ S+ DNP
Sbjct: 288 T---SLQTNTIDAKSIGEKFLFNHILIHLGEDKEAKVKLLLFMINKLLSVQKKISIEDNP 344
Query: 314 DSLQNQEILLPGHLITIYLKEKLEDWLRK--GKKLIQDEIENN----GKKFDFFNLANIK 367
DSL +QE LLPGHLI +Y KEK E L +K + I NN GK F K
Sbjct: 345 DSLSSQEFLLPGHLIMVYFKEKFESSLNFIFSQKEFEQNISNNFNKEGKSFQ-------K 397
Query: 368 KVMEKNPSKQI---GTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAV 424
+ SK G + ++ TG ++ +L Q +G +V ER+NF RF+S+FR++
Sbjct: 398 QFCTDFLSKAFMTTGKGLAQIISTGSYVSKFNHELSQTSGLSVSIERINFGRFLSYFRSI 457
Query: 425 HRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRD 484
HRG F L+ TS RKLLP+SWGFLCPVHTPDG CG+LNH S+ V S N +
Sbjct: 458 HRGKFFFELKNTSGRKLLPQSWGFLCPVHTPDGALCGILNHTASSVLV-----SLSNPLN 512
Query: 485 FSKMRTSILRVLIGVGMIPSLPK-LVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRR 543
+ R LPK +K + ++DG+++G IP + V LR
Sbjct: 513 CDFFKKYFFRY---------LPKNFLKEKKISSSIFMIDGKILGFIPKFFFKSFVDKLRT 563
Query: 544 LKVSAASVIPDDLEVGYVP-LSLGGAYPGLYLFTSPPKFVRPVRNISLPSEE-------- 594
KVS I E+ + + ++P L + + +RPV+ S ++
Sbjct: 564 EKVSVLGKISLGCEIFSISRFNRKCSFPSCILLSQDGRPLRPVKWFSFKKKKKFSVFKKK 623
Query: 595 --------SQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTP 646
IE+IG EQ F+ I D TH EI + +LSV+A TP
Sbjct: 624 NEKDFLNYCSEIEIIGTLEQCFLNIDNLDYQSSFFTKNMVGTHSEIEASNILSVIAGATP 683
Query: 647 YSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGI--D 704
+SD NQSPRNMYQCQM+KQ++G R D K + L PQ PI R N + G+ D
Sbjct: 684 FSDLNQSPRNMYQCQMSKQSVGTPFYTFWRRDDIKSFFLLNPQVPICR-NKIIQDGLQMD 742
Query: 705 EYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQK 764
+P G N++V+V+ YTG+DMEDAMI+NKSS++RG +Y +D+ K K
Sbjct: 743 AFPNGFNSVVSVITYTGFDMEDAMIINKSSIERGFASSNVYNCFDLDIKPSLLKKSNFFK 802
Query: 765 LFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYV 824
+ ++ V+ + L G + P E + SI+ K + NS SE +D +
Sbjct: 803 KKKTEEN------VLKTGDLLKKGAPLVPKESWYSIHKKNEAFFCYNS---SEKAIIDQI 853
Query: 825 AV--DMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMR 882
+ D++N++N+ +K +I+ R R P++GDKF+SRHGQKGV S L+ ID+PF+ + GM
Sbjct: 854 KIFSDIENNQNI-EKNSIKIRSRRRPLVGDKFASRHGQKGVFSYLYSSIDLPFTDL-GMN 911
Query: 883 PDLIINPHAFPSRMTIAMLLESVAAK 908
P++I NPH FPSRMTI ++LES+ K
Sbjct: 912 PEIIFNPHGFPSRMTIGVILESMIGK 937
>gi|270012190|gb|EFA08638.1| hypothetical protein TcasGA2_TC006301 [Tribolium castaneum]
Length = 848
Score = 484 bits (1246), Expect = e-134, Method: Compositional matrix adjust.
Identities = 265/643 (41%), Positives = 378/643 (58%), Gaps = 40/643 (6%)
Query: 270 VAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
+A+ +++ I +HL+ DKFN+L+FM QKLF V + D++ QE+LL GHL
Sbjct: 40 IADFILKKCIMIHLDKPEDKFNMLVFMCQKLFVFVQDKCKPEGADAVMMQELLLGGHLYL 99
Query: 330 IYLKEKLEDWLRKGK-KLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKT 388
+KE+L+ WL K +++ G +L+ + + S + + E L T
Sbjct: 100 QLIKERLQGWLFGLKSNILKRSSTLTG------HLSQTEILQAAKRSGGLENAFEMFLAT 153
Query: 389 GRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGF 448
G + + +GL L Q G T+ AE +N +R++S F+AVHRGA F +RTT VR+LLP++WGF
Sbjct: 154 GNITSSSGLGLMQDKGLTIVAENINRMRYMSHFKAVHRGAFFQEMRTTEVRQLLPDAWGF 213
Query: 449 LCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKL 508
+CPVHTPDG PCGLLNH+T+ C V D+R +I +L +GM+ +L +
Sbjct: 214 ICPVHTPDGAPCGLLNHLTTNCSVTDVPDARK--------VENIPIILTRLGMV-ALKYV 264
Query: 509 VKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPL-SLGG 567
G V+LDGRV+G + K+V LR K+ V P+ LE+ VPL +
Sbjct: 265 ASVGFDQNYVVVLDGRVLGYVRRDLAPKLVEQLRLCKIKGEEV-PNTLEIVLVPLMKVTA 323
Query: 568 AYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC--PDGGDGGRRNAF 625
+PGLYLFT P + +RP+ N+ +++ +E +G FEQV+M+I C PD G
Sbjct: 324 QFPGLYLFTGPARMMRPLLNL-----KTKEVEFVGTFEQVYMDI-CVSPDEYYKG----- 372
Query: 626 PATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHL 685
TH E+ LS +A L P D NQSPRNMYQCQM KQTMG + +++ KLY L
Sbjct: 373 VTTHMELSKLAFLSNLAQLIPMPDCNQSPRNMYQCQMGKQTMGTPCHNWRSQSETKLYRL 432
Query: 686 QTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIY 745
QTP TP+ R Y +D++ GTNAIVAV++YTGYDMEDAMI+NK++ +RG HG IY
Sbjct: 433 QTPATPLFRPVHYDNINLDDFAMGTNAIVAVISYTGYDMEDAMIINKAADERGFAHGSIY 492
Query: 746 QTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTT 805
+TE + L + + F RN + L +D+DGLP +G+ + G+P Y
Sbjct: 493 KTEFVTLEHESS-------YFCRNPEKPELAEFLDTDGLPIIGRRMKDGDPLYCYYSVDE 545
Query: 806 NSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCS 865
+ ++ G E FVD V + + + + A FR RNP +GDKF+SR GQKG+CS
Sbjct: 546 SVYKVTKFSGKEECFVDMVKL-CASFETTNRTACFTFRVPRNPNVGDKFASRAGQKGICS 604
Query: 866 QLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
Q WP D+PF+ TG+ PD++ NPH FPSRMTIAM++E +A K
Sbjct: 605 QKWPMEDLPFTE-TGLVPDIVFNPHGFPSRMTIAMMIEVMAGK 646
>gi|209881586|ref|XP_002142231.1| DNA-directed RNA polymerase, beta subunit family protein
[Cryptosporidium muris RN66]
gi|209557837|gb|EEA07882.1| DNA-directed RNA polymerase, beta subunit family protein
[Cryptosporidium muris RN66]
Length = 1341
Score = 484 bits (1245), Expect = e-133, Method: Compositional matrix adjust.
Identities = 339/1002 (33%), Positives = 495/1002 (49%), Gaps = 156/1002 (15%)
Query: 39 RQAKISYTGKLMADVEFQ-YLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
R +SY+ L +EF+ Y + VR G P+M+++ CHL +LV+
Sbjct: 129 RNGHLSYSAPLW--IEFECYNSSSKSSVRHNLFAGSIPIMVRSLACHLYSLSPNELVANG 186
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
E+ E+GGYFI+NG ERV R VI + NYP+ + RS F R T+ A+++R +R D +
Sbjct: 187 EDPNEVGGYFIINGNERVIRYVIQQRCNYPVGLKRSRFTSRDIFGTEYAILLRSLRNDGT 246
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLT---CC-----Y 209
S LY + L +E+LLP VL A+ D + + CC Y
Sbjct: 247 STANYLYGTTDNQCVYRILLNRQEWLLPFWNVLLAVGSIYDAKTLRNKILQYCCNTRDEY 306
Query: 210 DEKY------KKEKGAVGSPLVSERV--KIILAEVQDLSLTTRLQCLQHIGEH-FQPVID 260
D Y E G S V V D+ + L ++G+ ++ V+
Sbjct: 307 DPLYGVINMLTIEWGLDNSSGVENSVIPPSYDGAFGDIEIIENRH-LHNLGKLVWEGVVF 365
Query: 261 GLQSESYYAVA-ETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQ 319
L S Y A +I ++I VHL + N K LI M KL L ++ DS Q
Sbjct: 366 YLPPGSLYQDAGRFIIDNHILVHLPEWNAKLECLILMFIKLLKLQYGQIREESIDSFAYQ 425
Query: 320 EILLPGHLITIYLKEKLEDWLRKGKKLIQDEIEN-NGKKFD------------------- 359
EIL G+L LK+ + +L+K + + EI N N K +
Sbjct: 426 EILSSGNLYASVLKDAIFSFLQKIRMIYITEIRNRNSSKSEKEASDELPLPYSSAALDLL 485
Query: 360 ----FFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFL 415
FF + I+ + I I+ + TG + T T LDLQQ +G+TV A+RLNF
Sbjct: 486 RDDSFFKTSLIRNI------SMIPKRIQYFMATGNIKT-TQLDLQQLSGWTVVADRLNFN 538
Query: 416 RFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASY 475
RF+S FRAVHRG F ++TT VRKL+ E+WGFLCPVHTPDGEPCGLL H++ +
Sbjct: 539 RFLSHFRAVHRGQFFTTMKTTDVRKLMGETWGFLCPVHTPDGEPCGLLLHLSQDTIPVTQ 598
Query: 476 YDSRG---NIRDFSKMRTSILRVLIGVGMIP-----------SLPKLVKSGPPAVLSVLL 521
++ + N+RD+ + + G+G + +P L KS P V+L
Sbjct: 599 FEIQSTLKNLRDY--LVGQNIPCDDGLGTLSIQWGSLNLDDIYVPDLSKSVP-----VML 651
Query: 522 DGRVVGVIPSSEIEKVVAHLRRLKVSAA-SVIPDDLEVGYVPLSLGGAYPGLYLFTSPPK 580
DGRV+ IP + LR LK S S++P E+ +P G + G+++FT+P +
Sbjct: 652 DGRVMFHIPKLKFTFWQEKLRNLKWSKTPSILPVHTEIACIPPDCG-VFSGIFMFTAPGR 710
Query: 581 FVRPVRNISLPSEESQNIELIGPFEQVFMEI----------------------------- 611
VRPV ++ +S I+ IGP Q +M+I
Sbjct: 711 LVRPVLHL-----KSNKIDWIGPLAQPWMDIGVTEEETQKSIKLYNLQMKLFGLYRNDNI 765
Query: 612 ----RCPDGGDGGR------------RNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPR 655
D D + N TH+E+HP+ +LS+ A+L PY+ HNQSPR
Sbjct: 766 TSDIETTDNMDKNQIEEMIKKDYTLGCNPVMYTHQELHPSTILSITASLIPYAHHNQSPR 825
Query: 656 NMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVA 715
NMYQCQM KQTMG + +R D ++Y + TPQ P+V T Y YG EYPTGTNAIVA
Sbjct: 826 NMYQCQMLKQTMGTPCYSYPYRTDNRMYRIITPQNPLVITKGYASYGFSEYPTGTNAIVA 885
Query: 716 VLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDG--NKVDRGQKLFRR-NKDA 772
V++++GYDMEDAM+LNK+S +RG+ H +Y+T+ + + + K D F D
Sbjct: 886 VISHSGYDMEDAMVLNKASYERGIFHACVYKTKILFAAPNSVIKKSDAESYRFHNIGPDG 945
Query: 773 KSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTN----SRKGSESVFVDYV---- 824
K + + +DGLP +GQ + G P C + + +N + E +V+ +
Sbjct: 946 KLVIKELGADGLPMIGQKLVKGSPMCRVEKLGSGGVISNAIVQTYHDDEEAYVEKINRVG 1005
Query: 825 ---AVDMKNSKNLP---------------QKANIRFRHTRNPIIGDKFSSRHGQKGVCSQ 866
+ + + L +K +++ R RNP++GDKF+SRHGQKG+ S
Sbjct: 1006 SGLSTESHSDSTLGGSGGPGGSEYSSGYGEKISLKLRIVRNPMVGDKFASRHGQKGILSM 1065
Query: 867 LWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
LWP +MPF G +G+ PD++ NPH FPSRMT+ ML+E +A K
Sbjct: 1066 LWPHENMPF-GESGIVPDILFNPHGFPSRMTVGMLIECMAGK 1106
>gi|303388613|ref|XP_003072540.1| DNA-directed RNA polymerase subunit B [Encephalitozoon intestinalis
ATCC 50506]
gi|303301681|gb|ADM11180.1| DNA-directed RNA polymerase subunit B [Encephalitozoon intestinalis
ATCC 50506]
Length = 1047
Score = 477 bits (1227), Expect = e-131, Method: Compositional matrix adjust.
Identities = 311/889 (34%), Positives = 461/889 (51%), Gaps = 117/889 (13%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR+ ++Y GK++ + ++ E G FP+M+++ CHL+ A + V
Sbjct: 69 CRERGLTYKGKII--IRISLFHDNKHIMTEDKLAGYFPIMVRSSLCHLRNAKNMNKVG-- 124
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
E+ E+GGYFI+NG ++ R I K+N+ + R R +T V +RCV KD+
Sbjct: 125 EDEDEVGGYFIINGFDKFIRFTITQKRNHIFAF---KTRKRESFFTGYGVSMRCVGKDEI 181
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
LYY +G+V L + + E+ P+ ++L+ALV+T D E++
Sbjct: 182 GHMNNLYYCTDGNVVLKMYYRRSEFFFPLVLILRALVNTTDEELYE-------------- 227
Query: 218 GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRD 277
A+G ER +L + ++ +R +CL +IG F + + S VAE ++
Sbjct: 228 -ALGQ---GERAIHLLKCFAEYNVFSRKECLDYIGSRFSSMAN---FGSKIEVAEEILSK 280
Query: 278 YIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLE 337
YI HL+ + DKFN LI +KLFS V++ ++ DS N E+ +++ L++K+E
Sbjct: 281 YIASHLSSHLDKFNFLILAAKKLFSFVNNEIAEEDFDSSGNHELHTTTQILSSLLRDKIE 340
Query: 338 DWLRK-----GKKLIQDEIEN------------NGKKFDFFNLANIKKVMEKNPSKQIGT 380
+++R K ++ E E +G D ++ IK++ +K IG
Sbjct: 341 EFMRSLPIAYKKAYLKSEGEKRRLEEDSDSEVVDGIYEDKLDILKIKEIFKK-AVMNIGQ 399
Query: 381 SIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRK 440
+E L +G + D+ Q G ++ ER NF R+ R+++RG L T +RK
Sbjct: 400 KVELFLSSGNIFLSCCSDILQTTGLSITLERTNFYRYFGNLRSINRGTHIPSL-VTRIRK 458
Query: 441 LLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVG 500
L PESWGF+CPVHTPDG CG+L HM + S R N DF +L +G
Sbjct: 459 LRPESWGFICPVHTPDGACCGVLLHMAKGADIVS----RAN--DFDT------EILFELG 506
Query: 501 MIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGY 560
++P++ + P VL+DG+V+G S + +V LR KV + L++
Sbjct: 507 VVPTIRGVRMEVP-----VLVDGKVIGSTSSPQF--LVRMLREYKVK------NRLKIEI 553
Query: 561 VPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDG-GDG 619
V + + +F+S +F+R V N L SEE +G EQV + I G GD
Sbjct: 554 VYSEGTKVFSSVCIFSSMGRFIRKVMNQRLGSEE-----WVGIMEQVSLNIDLERGEGD- 607
Query: 620 GRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRAD 679
+ EI + +L ++A LTPYS+HNQSPRNMYQCQMAKQ MGFS +K R D
Sbjct: 608 ---------YHEIDKSNILGIIAGLTPYSEHNQSPRNMYQCQMAKQAMGFSAYNMKTRID 658
Query: 680 QKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGM 739
+Y++ Q+P+VRT Y + +YP G N +VAVL+YT YDMEDA+++NKSS++RG+
Sbjct: 659 HTMYNINYLQSPLVRTKGYDM--VKDYPLGINCMVAVLSYTAYDMEDALVINKSSIERGL 716
Query: 740 CHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCS 799
G IY+TE I L NK L+ LP VG+ I
Sbjct: 717 FTGLIYKTERIVL----------------NKGYSFLY-------LPSVGEKIQKDSILYK 753
Query: 800 IYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHG 859
D ++T + + V +D V V ++ + A + R RNP IGDKFSSRHG
Sbjct: 754 YVDLEDREYQTRYLETEDGV-IDSVRVFESDAGE--RCALLTIRMVRNPTIGDKFSSRHG 810
Query: 860 QKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
QKGVCS WP IDMPF+ +G PD+IINPHAFPSRMTI ML+ES+A K
Sbjct: 811 QKGVCSVHWPSIDMPFTE-SGYVPDIIINPHAFPSRMTIGMLMESIAGK 858
>gi|399950011|gb|AFP65667.1| DNA-directed RNA polymerase I 135K chain [Chroomonas mesostigmatica
CCMP1168]
Length = 1127
Score = 469 bits (1207), Expect = e-129, Method: Compositional matrix adjust.
Identities = 309/925 (33%), Positives = 475/925 (51%), Gaps = 72/925 (7%)
Query: 14 ELVRHHIESFDYMLDEG-LSEMFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFG 72
EL H+ + + L++ + ++ CR+ K+SY G + + + + F G
Sbjct: 56 ELFGFHVSTPSFYLNKKKIKKIPRQCRELKVSYGGDFLIGIASLFEKKKKGFI---FRIG 112
Query: 73 QFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVR 132
+ P+M+++ +C+L ++L + EE E+GGYFI+ G E++ R +I+PK+N P+ R
Sbjct: 113 EIPIMIRSMKCNLFYQKKKQLTEIDEEEVEVGGYFIIKGQEKMLRLLIVPKKNTPLVCSR 172
Query: 133 SSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKA 192
+ R + T + +R V + Q+S T+ L+YL GS+ + ++ KE+ P+ I++K+
Sbjct: 173 INNVQRGDLCTSLSCSLRSVDRVQTSRTIHLHYLTTGSIHVRIVVKKKEFFFPIIILIKS 232
Query: 193 LVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEV-QDLSLTTRLQCLQHI 251
L + +D ++F L K G + RV I+L E Q L RL+ L +
Sbjct: 233 LNEISDQQLFECLI----------KNNQGDKYLINRVMIMLKEAHQFCDLKERLKILDFL 282
Query: 252 GEHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDN-NDKFNLLIFMLQKLFSLVDHTSVS 310
G+ + S + ++E + YIFVHL +N K +L FM+ KL +
Sbjct: 283 GQILKIAFPENLSNNV-KISEIFLSKYIFVHLGNNRKSKADLFFFMMLKLVFTQKGICLE 341
Query: 311 DNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVM 370
DNPDS+ +QE LLPGHL+ +Y KEK+E R I N K D L KK+
Sbjct: 342 DNPDSIDSQEFLLPGHLLLMYFKEKIEISSRYDYSFQYQNIGNLPKG-DTLPLIEKKKLY 400
Query: 371 EKNPSKQIGT---SIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRG 427
+K K G I + TG L +L Q G +V ER+NF RF+S+FR++HRG
Sbjct: 401 KKLIGKVFGKIHHGIFQTISTGSLMINLDQELVQTNGLSVSLERINFGRFLSYFRSLHRG 460
Query: 428 ASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYD-SRGN-IRDF 485
F L+TTS RKL P+SWGF+CPVHTPDG CG+LNH++ + +S +RG IR F
Sbjct: 461 KFFLDLKTTSSRKLWPQSWGFICPVHTPDGLLCGILNHLSFSVVFSSCNPINRGTLIRYF 520
Query: 486 SKMRTSILRVLIGVGMIPSLPKLVKSGP-PAVLSVLLDGRVVGVIPSSEIEKVVAHLRRL 544
++ L KL S P + + +++DG+++G P ++ V R
Sbjct: 521 NRY----------------LQKLFFSSPKKSTIPLIIDGKIIGFAPKFSLKNFVDRFRSE 564
Query: 545 KVSAASVIPDDLEVGYVP-LSLGGAYPGLYLFTSPPKFVRPVRNISLPSE---------- 593
KVS P E+ +V +P L L T + +RP++ + +
Sbjct: 565 KVSNIGFFPICFEILFVSRFHSKSFFPHLILSTEDGRLLRPLKWQTKKKKIAFLIRGEYE 624
Query: 594 ----ESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSD 649
S IEL+G EQ F+ I D +H EI + + S +A TP+S+
Sbjct: 625 DFLRNSSEIELLGSLEQNFLNIDNFDYQINFIEKFTKGSHREIEASSIFSTIAGATPFSE 684
Query: 650 HNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYG--IDEYP 707
NQSPR++YQCQM+KQ++G R D K Y L TPQ PI R N + G +D +P
Sbjct: 685 MNQSPRDIYQCQMSKQSVGTPFYTFWRRDDSKSYFLITPQIPICR-NKIIQDGLCLDSFP 743
Query: 708 TGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFR 767
G N++V+V++YTG+DMED M++NKSS+ RG I + +IDLS K F+
Sbjct: 744 NGFNSVVSVISYTGFDMEDGMVINKSSIQRGFSMINI--SNSIDLSITS-------KSFQ 794
Query: 768 RNKDAKSLHSVIDSDGLPYVGQMIHPGEPY--CSIYDKTTNSWRT-NSRKGSESVFVDYV 824
+NK ++ + +G I G+P C I +T KG E V+ +
Sbjct: 795 KNKTKNKFKEILFNRNFLKIGHTIKKGDPLAPCQIMKNIGKKTKTFFCYKGIEKTIVEQM 854
Query: 825 AVDMKNSKNLPQKAN-IRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRP 883
+ ++ + + N I+ R R P GDKF+SRHGQKGV S + ++PFS + G+ P
Sbjct: 855 KIFFCKTEKIEGERNIIKLRSRRRPSTGDKFASRHGQKGVFSFDYSSENLPFSDL-GIIP 913
Query: 884 DLIINPHAFPSRMTIAMLLESVAAK 908
++I NPH PSRMTI ++LES+A K
Sbjct: 914 EIIFNPHGLPSRMTIGVILESIAGK 938
>gi|147800491|emb|CAN62043.1| hypothetical protein VITISV_038847 [Vitis vinifera]
Length = 416
Score = 469 bits (1206), Expect = e-129, Method: Compositional matrix adjust.
Identities = 240/405 (59%), Positives = 288/405 (71%), Gaps = 67/405 (16%)
Query: 8 DFEPLRELVRHHIESFDYMLDEGLSEMFD------------------------------- 36
D+EPLREL +HHI+SFD++++ GL +
Sbjct: 7 DYEPLRELFQHHIDSFDHLVEFGLETLLMSVKPVESLFITHNGVFFLTRIALWFGQPELY 66
Query: 37 ------------------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVML 78
CRQAKISY+GKL+ADV FQY V+RE+FN GQFP+ML
Sbjct: 67 PPQKERSARTMRDALYPFECRQAKISYSGKLLADVCFQY--GNGVVIREKFNLGQFPMML 124
Query: 79 KTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDR 138
K++ CHL+GAD QKLVS KEE++EMGGYFILNGLERV R +ILPK+NYPMSMVR+SFRDR
Sbjct: 125 KSKLCHLRGADPQKLVSCKEESSEMGGYFILNGLERVVRLLILPKRNYPMSMVRNSFRDR 184
Query: 139 REGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTND 198
REGYTDKAVVIRCVR+DQS+VT+KLYYL NGS RLGFW+QG+EYLLPVG+VLKAL+DT D
Sbjct: 185 REGYTDKAVVIRCVREDQSAVTVKLYYLRNGSARLGFWIQGREYLLPVGVVLKALIDTTD 244
Query: 199 LEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPV 258
EI+ LTCCY EKY+ KGAVG+ LV ERVKIIL EV+DLSL TR QCLQHIGEHFQ V
Sbjct: 245 HEIYESLTCCYSEKYEGGKGAVGTQLVGERVKIILDEVRDLSLFTRHQCLQHIGEHFQLV 304
Query: 259 IDGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFM----------------LQKLFS 302
+DGL++ESY VA+ V+R+YIFVHL++N DKFNLL+ + + KLFS
Sbjct: 305 MDGLENESYSIVADAVLREYIFVHLDNNYDKFNLLMLVIVSFKFLSYPYLIVATIVKLFS 364
Query: 303 LVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLI 347
L+D TSV DNPD LQNQE+LLPGHLITIYLK ++ L GK +
Sbjct: 365 LIDQTSVPDNPDVLQNQEVLLPGHLITIYLKVQILQLLSLGKMFL 409
>gi|387593249|gb|EIJ88273.1| RNA polymerase I [Nematocida parisii ERTm3]
gi|387596039|gb|EIJ93661.1| RNA polymerase I [Nematocida parisii ERTm1]
Length = 1143
Score = 468 bits (1203), Expect = e-129, Method: Compositional matrix adjust.
Identities = 314/931 (33%), Positives = 467/931 (50%), Gaps = 130/931 (13%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CRQ +Y +++ DV + + + G PVM+++ C+L +LV K
Sbjct: 76 CRQTVQTYQSEVLTDV---CISINGIAKTQEVSLGFIPVMVRSDLCYLSSMSDTELVQAK 132
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
E+ AEMGGYFI G E++ R + + K+ P + R S + + ++ AV + +
Sbjct: 133 EDPAEMGGYFIYKGSEKICRLLQIQKKYVPFGIYRPSMSKKNKNMSEHAVSYKSTNQFGQ 192
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
S L+Y + S+++ L +EY +P+ +VL+ L D E+ + +
Sbjct: 193 STLFSLHYFTDHSIKVRVRLLKREYYIPLHLVLRGLSGKTDQEVNDSF-----------R 241
Query: 218 GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSE------------ 265
+ + E V ++L T+ +CL ++G F+ +E
Sbjct: 242 AVLKDADLMEYVDLLLQSFSLHGEYTQRECLVYLGNKFRLYYQMSHTEMTMQEARLKKSA 301
Query: 266 ---SYYAVAE-------------------------TVIRDYIFVHLNDNNDKFNLLIFML 297
Y A+ I D I H NDK+NLLI +
Sbjct: 302 KNWEYTTTAQGKSPSEVECDISKYQDCLTDEEVGVRFINDTIGSHTKSFNDKYNLLILCV 361
Query: 298 QKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKK 357
KLF V SDN D+L E + G +T + +K++ R + + I
Sbjct: 362 SKLFQQVSGRVPSDNGDALSFHETITIGDTLTEIVTDKVQGIRRSFRNELISCIHYLSIS 421
Query: 358 FDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLA--TQTGLDLQQRAGYTVQAERLNFL 415
+ N ++ +++++ + S+ +L G L+ + + Q+AG+T+ AERLN++
Sbjct: 422 VN--NPTDLNRILKRCFTP-FTPSVNRLLACGVLSFTNLSAYAMMQQAGFTIVAERLNYM 478
Query: 416 RFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASY 475
RF S R+VHRG+ F +RT++VRKLLPESWGFLCPVHTPDG PCGLL H++ C V+
Sbjct: 479 RFFSHLRSVHRGSFFEAMRTSTVRKLLPESWGFLCPVHTPDGSPCGLLTHLSHACVVSH- 537
Query: 476 YDSRGNIRDFSKMRTSILRV--LIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSE 533
T L V LI GM+ + L +G P VL +GRV G +
Sbjct: 538 -------------ETYALPVHELISYGMVHLMSTL--TGVP----VLQNGRVTGTVSPDR 578
Query: 534 IEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSE 593
+ + LRR K+ + Y + G L + +P +FVRP+ NI
Sbjct: 579 VGSFIDSLRRRKLRGD-------KFKYAEIIYNG--DTLSIINTPNRFVRPLVNI----- 624
Query: 594 ESQNIELIGPFEQVFMEI----RCPDG-GDGGRR----NAFPA------THEEIHPTGML 638
+ IE IG EQ+++++ +C G D R N+ PA TH E+ PT ML
Sbjct: 625 KEGCIEYIGSSEQMYVQVEGLAQCTAGVSDKITRMYACNSNPAMVYSAPTHREVSPTHML 684
Query: 639 SVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTY 698
SVV+ TP + N SPRNMYQCQMAKQ+MG + K+R DQK+Y L QTP + TN Y
Sbjct: 685 SVVSGSTPLGNFNPSPRNMYQCQMAKQSMGTTPHTQKYRTDQKVYSLDYVQTPTLHTNLY 744
Query: 699 TKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNK 758
+YG+ EYP G N +A+L+YTGYD+EDA+ILNK+SV+RG G + +TET++ +D
Sbjct: 745 AEYGLGEYPNGKNITIAILSYTGYDVEDAVILNKASVNRGFMRGCVLKTETVNFNDS--- 801
Query: 759 VDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMI-HPGEPYCSIYDKTTNSWRTNSRKGSE 817
L ++ +GLP VGQ+I G Y ++ K + + SE
Sbjct: 802 ------------PEFELGTLSCGEGLPEVGQLIPDRGVIYTTVNTKVLEE-KVHKNSASE 848
Query: 818 SVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSG 877
S+ V +++V + ANI R R P IGDKFSSRHGQKGVCS L+ D D+PFS
Sbjct: 849 SMRVKHISV--YQGAGGKRSANITLRIPRIPTIGDKFSSRHGQKGVCSILYEDEDIPFSE 906
Query: 878 VTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
+G+ PDLIINPHAFPSRM+I M +E++A+K
Sbjct: 907 -SGVTPDLIINPHAFPSRMSIGMFIENIASK 936
>gi|10434547|dbj|BAB14296.1| unnamed protein product [Homo sapiens]
Length = 714
Score = 467 bits (1201), Expect = e-128, Method: Compositional matrix adjust.
Identities = 251/529 (47%), Positives = 330/529 (62%), Gaps = 24/529 (4%)
Query: 382 IETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKL 441
E + TG L ++TGL L Q +G V A++LNF+R++S FR VHRGA FA +RTT+VR+L
Sbjct: 9 FEYLFATGNLRSKTGLGLLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVRRL 68
Query: 442 LPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGM 501
LPESWGFLCPVHTPDGEPCGL+NH+T+ C V + + +I L +GV
Sbjct: 69 LPESWGFLCPVHTPDGEPCGLMNHLTAVCEVVTQFVYTASI--------PALLCNLGVTP 120
Query: 502 IPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYV 561
I P S VLLDG +VG + + LR KV IP +EV +
Sbjct: 121 IDGAPHRSYS---ECYPVLLDGVMVGWVDKDLAPGIADSLRHFKVLREKRIPPWMEVVLI 177
Query: 562 PLSLGGA-YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGG 620
P++ + YPGL+LFT+P + VRPV+N++L EE LIG EQ+FM + +
Sbjct: 178 PMTGKPSLYPGLFLFTTPCRLVRPVQNLALGKEE-----LIGTMEQIFMNVAIFED---- 228
Query: 621 RRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQ 680
A TH+E+ P +LSV+AN P+SDHNQSPRNMYQCQM KQTMGF + + R+D
Sbjct: 229 EVFAGVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDN 288
Query: 681 KLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMC 740
KLY LQTPQ+P+VR + Y Y +D YP GTNAIVAV +YTGYDMEDAMI+NK+S +RG
Sbjct: 289 KLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVAVTSYTGYDMEDAMIVNKASWERGFA 348
Query: 741 HGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSI 800
HG +Y++E IDLS+ + D + D + L +D DGLP++G + G+PY S
Sbjct: 349 HGSVYKSEFIDLSEKIKQGDSSLVFGIKPGDPRVLQK-LDDDGLPFIGAKLQYGDPYYSY 407
Query: 801 YDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHTRNPIIGDKFSSRHG 859
+ T K E+ VD + V ++ + K I R RNP IGDKF+SRHG
Sbjct: 408 LNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGKFKCVCITMRVPRNPTIGDKFASRHG 467
Query: 860 QKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
QKG+ S+LWP DMPF+ +GM PD++ NPH FPSRMTI ML+ES+A K
Sbjct: 468 QKGILSRLWPAEDMPFTE-SGMVPDILFNPHGFPSRMTIGMLIESMAGK 515
>gi|429329474|gb|AFZ81233.1| DNA-directed RNA polymerase subunit beta, putative [Babesia equi]
Length = 1270
Score = 462 bits (1190), Expect = e-127, Method: Compositional matrix adjust.
Identities = 314/962 (32%), Positives = 468/962 (48%), Gaps = 108/962 (11%)
Query: 37 HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
H + + +Y L+ ++ D S V +E G PVM+K++RC+L G +++V
Sbjct: 89 HAKTSHTTYEAPLVVTFGIKFSDTESIVTKELI-VGHIPVMVKSKRCNLSGLTPEEMVQQ 147
Query: 97 KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQ 156
E+ E GGYFI+ G+E++ R VI+ + NYP+++ + R +TD ++V+RC D
Sbjct: 148 GEDIDEPGGYFIIRGVEKIIRQVIITRSNYPIAIKSENNSLRNVLFTDYSIVMRCQSHDD 207
Query: 157 SS-VTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVD-TNDLEIFNHL--TCCYDEK 212
VT LY +N ++ L+P+ ++L+ALV +D E+ L DE+
Sbjct: 208 GCYVTNVLYLTINKRCMFRVLIKNSVVLIPLTLLLRALVPYMSDDELKQKLLQNTIGDEE 267
Query: 213 YKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQ-----CLQHIGEHFQPVIDGLQSESY 267
++ R IL+++ D + L C I ++ P ++
Sbjct: 268 MTTYYHQFFLDMI--RCDPILSDI-DFTENRYLYRLGKVCWSRINQYLHP------GATF 318
Query: 268 YAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHL 327
A ++ ++ +H + N +KF L+FM KL L S++ DS QEILLPG
Sbjct: 319 EECAVYFLKYFVIIHAHTNVEKFETLLFMFNKLIKLSRGEIQSESYDSFAFQEILLPGQT 378
Query: 328 ITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIK-KVMEKNPSKQIGTSIETML 386
+ LKE L L + KK+ EI G+ A K K M+ ++ T I+ +L
Sbjct: 379 YSCILKESLYLALTRIKKIYSTEISYFGRYLQGDVSARSKRKFMDFGENQDSSTLIKQLL 438
Query: 387 KTGRL------------------------ATQTGLDLQQRAGYTVQAERLNFLRFISFFR 422
+ L A + +L Q AG+ V A+R+N+ RF S FR
Sbjct: 439 SSVALFNYATDKIAPLISKRLLYFLSSGNALNSHFELNQSAGFVVVADRINYHRFASHFR 498
Query: 423 AVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNI 482
++HRG F +R+T VR+LL E+WGF+CPVHTPDG PCGLL H++ + + +I
Sbjct: 499 SIHRGNIFTKMRSTEVRRLLGETWGFICPVHTPDGAPCGLLLHISQYAVLVTDPKCDDSI 558
Query: 483 RDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLR 542
+ + + G + +L+DG + IPSS+ V LR
Sbjct: 559 SRVKQCLKHLGYCVDLCGNTLITNYFTSKDEKHYIPILVDGIPICTIPSSDSMNVYNQLR 618
Query: 543 RLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIG 602
+ K++ + E+ +P S Y + + T P + +RPVR + ++ N+E IG
Sbjct: 619 QAKLNGNFGMKQHYEIIALPDS-KTTYSNISVMTYPGRMIRPVRCV-----KTGNVEWIG 672
Query: 603 PFEQVFMEI--------------------------------------RCPDGGDGGRRNA 624
P Q++ I C D NA
Sbjct: 673 PITQLWSTIAVSEYELSLSHSILESENVNKPHIAPSISETLSLHRNKECNTNVDKFLENA 732
Query: 625 FPATHE--EIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKL 682
P ++E E+ P+G+LSV+A LTP+S+HNQSPRNMYQCQM KQ+MG +R+D K
Sbjct: 733 -PVSYEFVELKPSGILSVIAALTPFSNHNQSPRNMYQCQMLKQSMGVPYHCETYRSDNKS 791
Query: 683 YHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHG 742
Y L TPQ P+V T Y K G D+Y TG NAIVAV+A++G+DMEDAMILNK+S+DRG HG
Sbjct: 792 YRLITPQKPLVTTEEYRKMGYDDYSTGINAIVAVIAHSGFDMEDAMILNKASLDRGAFHG 851
Query: 743 QIYQTETID-LSDDGNKVDRGQKLFRRNKDAKSL-HSVIDSDGLPYVGQMIHPGEPYCSI 800
IY+T+ ID + D F DA +L +D DGLP VGQ + G +C +
Sbjct: 852 CIYKTKIIDAMPPSAVNKDSHSYYFNNINDAGNLIIKHLDKDGLPSVGQKVKKGMIFCRV 911
Query: 801 YDKTTN------SWRTNSRKGSESVFVDYVAVDMKNSKNLP--------QKANIRFRHTR 846
+ + R E V V +S + I+ R R
Sbjct: 912 EARERQNGEIHITERLEKYDDEEGVIDQVTLVGFSDSSADKSSSSGIKCTRVVIKLRIVR 971
Query: 847 NPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVA 906
NP++GDKF+SRHGQKG+ S WP DMPF +G+ PD+I NPH PSRMT+ L+E +A
Sbjct: 972 NPVVGDKFASRHGQKGILSMTWPVEDMPFLE-SGIVPDIIFNPHGLPSRMTVGKLIECMA 1030
Query: 907 AK 908
K
Sbjct: 1031 GK 1032
>gi|384244906|gb|EIE18403.1| beta and beta-prime subunits of DNA dependent RNA-polymerase,
partial [Coccomyxa subellipsoidea C-169]
Length = 694
Score = 461 bits (1185), Expect = e-126, Method: Compositional matrix adjust.
Identities = 259/533 (48%), Positives = 331/533 (62%), Gaps = 55/533 (10%)
Query: 378 IGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS 437
+ + +E +L TG L + + LDL Q G+TV AE+LNF R++S FRA+HRGA FA LRTT+
Sbjct: 1 VWSQVEYLLNTGNLVSNSTLDLSQATGFTVVAEKLNFFRYLSHFRAIHRGAYFAQLRTTT 60
Query: 438 VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLI 497
VRKLLPESWGFLCPVHTPDG PCGLL+H+T+TCRV + N D ++ +I+ V
Sbjct: 61 VRKLLPESWGFLCPVHTPDGAPCGLLSHLTATCRVVAAPPE--NPED---VQQAIITVAA 115
Query: 498 GVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLE 557
+GM+P+ P L P + V LDGR +G A +++P DLE
Sbjct: 116 SLGMVPAAPALAPPALPQYMGVHLDGRAIG------------------FGAETLVPADLE 157
Query: 558 VGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGG 617
V VP GG YPGLYLF+ P + +RPV + LP ELIG EQ+ M I
Sbjct: 158 VALVPYEAGGPYPGLYLFSGPARMIRPV--LQLPGGCP---ELIGTLEQINMHI------ 206
Query: 618 DGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFR 677
+ F T P +V DH + R+ + C S Q+++ R
Sbjct: 207 ----SSKFMHT-----PKFSFQLVM------DHLHAQRS-FTCTSGD--FSSSAQSVRHR 248
Query: 678 ADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDR 737
D KLY LQTPQTPI RT Y +Y +DE+P+GTN IVAVLAYTGYDMEDAMILNKS+VDR
Sbjct: 249 TDAKLYRLQTPQTPIARTQRYDEYHMDEFPSGTNMIVAVLAYTGYDMEDAMILNKSAVDR 308
Query: 738 GMCHGQIYQTETIDLSDD-GNKVDRGQKLFR-RNKDAKSLHSVIDSDGLPYVGQMIHPGE 795
G+ HG +++TE +DL DD G + R L + R++ + ID DGLP+VG +++PG+
Sbjct: 309 GLAHGTLFKTEGLDLRDDKGKAMVRLSPLAQVRSQGVQKNEERIDVDGLPHVGTVVYPGQ 368
Query: 796 PYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFS 855
Y S D+ T +T + KG E VD V + NL Q+ANI R RNP++GDKFS
Sbjct: 369 AYYSKVDRATGKAKTGNMKGEEVAVVDQVTIVGTADPNL-QRANILMRINRNPVVGDKFS 427
Query: 856 SRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
SRHGQKGV SQLWPDI+MPF TGMRPDLIINPHAFPSRMTI ML+ES+ +K
Sbjct: 428 SRHGQKGVLSQLWPDINMPFVAGTGMRPDLIINPHAFPSRMTIGMLMESLVSK 480
>gi|378755817|gb|EHY65843.1| RNA polymerase I [Nematocida sp. 1 ERTm2]
Length = 1063
Score = 461 bits (1185), Expect = e-126, Method: Compositional matrix adjust.
Identities = 306/934 (32%), Positives = 467/934 (50%), Gaps = 136/934 (14%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR SY ++ A + Q + G+ V + + G PVM+++ C+L +++ K
Sbjct: 76 CRLTSQSYQSEVFASL--QTVVNGA-VSTQEVSLGIIPVMVRSELCYLSEMKDAQMIKAK 132
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
EE + GGYFI G E++ R + + K+ P + R + + ++ AV + R
Sbjct: 133 EEPNDFGGYFIYKGTEKICRLIQIQKKYVPFGIYRPGMSKKSKNMSEHAVSYKSARPSGQ 192
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
+ L+Y + S+++ + KEY +P+ +VL+ L D EI K
Sbjct: 193 TSMFVLHYFTDHSIKIRVKMGKKEYYIPLHLVLRGLSGKTDQEIRESF-----------K 241
Query: 218 GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGE------HFQPV--------IDGLQ 263
G + + E V ++L + T+ + L ++G H PV + +
Sbjct: 242 GVLKDDDLMEYVDLLLQSFSFHAEYTQKEALTYLGSKFRLYYHVSPVELASVGSRLKKQK 301
Query: 264 SESYYAVA---------ETVIRDY-----------------IFVHLNDNNDKFNLLIFML 297
S +A A E I +Y + VH +K++LL+ +
Sbjct: 302 KASMFASATAEEPIEELEKSIYEYTPMLSDMECGMNFINNTVAVHTASATEKYDLLVLCI 361
Query: 298 QKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIEN-NGK 356
KLF V +DN D+L E + G +T +K++ +RK I + + + +
Sbjct: 362 AKLFQQVSGKIPADNGDALSFHEAITVGDTLTEIAVDKMQ-MIRK--TFINELVASIHYL 418
Query: 357 KFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQT--GLDLQQRAGYTVQAERLNF 414
++ + +V++K S +S+ +L +G L+ + Q+AG+T+ AERLNF
Sbjct: 419 SISVTDITALSRVIKKAVSP-FTSSMHRLLASGVLSFNNLGSYAMMQQAGFTITAERLNF 477
Query: 415 LRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVA- 473
LRF S R++HRGA F +RT++VRKLLPESWGFLCPVHTPDG PCGLL H++ C ++
Sbjct: 478 LRFFSHLRSLHRGAFFEAMRTSTVRKLLPESWGFLCPVHTPDGSPCGLLTHLSHACAISH 537
Query: 474 -SYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSS 532
+Y S + +R+ + ++ + IP ++ +GRV+G I
Sbjct: 538 QTYALSTAEL-----IRSGMNHLMSNLSGIP---------------IIQNGRVMGTISEK 577
Query: 533 EIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPS 592
IE + LRR K+ E+ Y +L + +P +FVRP+ NI
Sbjct: 578 SIESFIESLRRKKILGGKF--KYAEIIYNTQTLN-------IINTPNRFVRPLMNI---- 624
Query: 593 EESQNIELIGPFEQVFMEIRCPDGGDGGRRNA------------------FPATHEEIHP 634
+ +E IG EQ+ ++I +G G++ TH EI
Sbjct: 625 -KENAVEYIGSSEQLHIQI---EGLSSGKKETTEKIQKIAEMCRNQDVVRVEPTHREIAA 680
Query: 635 TGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVR 694
T +LSVVA TP + N SPRNMYQCQMAKQ+MG + K R DQK+Y L QTP +
Sbjct: 681 TNILSVVAGSTPLGNFNPSPRNMYQCQMAKQSMGTAPHTQKHRTDQKIYCLDYVQTPTMH 740
Query: 695 TNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSD 754
TN Y KYG+ +YP G N +A+L+YTGYD+EDA+ILNK+SVDRG G + +TE I+ SD
Sbjct: 741 TNLYAKYGLGDYPNGKNITIAILSYTGYDLEDAVILNKASVDRGFMRGAVIKTEAINFSD 800
Query: 755 DGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRK 814
+ + ++ D +GLP VG++I E + + + +
Sbjct: 801 MPD---------------MEIGTLNDKEGLPDVGKLIKDKETIYTTVNTKFLEEKAHKSH 845
Query: 815 GSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMP 874
E++ V V++ S N + ANI R R P IGDKFSSRHGQKGVCS L+ D DMP
Sbjct: 846 ALENMRVQNVSI--YQSSNGKRAANITMRIPRVPTIGDKFSSRHGQKGVCSILYEDEDMP 903
Query: 875 FSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
F+ +G+ PDLIINPHAFPSRM+I M +E++AAK
Sbjct: 904 FNE-SGITPDLIINPHAFPSRMSIGMFIENIAAK 936
>gi|401398077|ref|XP_003880213.1| DNA-directed RNA polymerase,related [Neospora caninum Liverpool]
gi|325114622|emb|CBZ50178.1| DNA-directed RNA polymerase,related [Neospora caninum Liverpool]
Length = 1365
Score = 459 bits (1181), Expect = e-126, Method: Compositional matrix adjust.
Identities = 336/1016 (33%), Positives = 497/1016 (48%), Gaps = 149/1016 (14%)
Query: 21 ESFDYMLDEGLSEMFDHCRQAKISYTGKL-MADVEFQYLDAGSPVVRERFNFGQFPVMLK 79
ES D D+ L + HCR+A I+Y L +A V D + VR+ G P+M++
Sbjct: 133 ESRDACADQLL--LPRHCREAHITYGAPLKVAFVRSNNRDGSA--VRKDVVVGMAPLMVR 188
Query: 80 TRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRR 139
++ C +G ++L E+ + GGYFI+NG ERV R V+ + N+P+++ R +F +R
Sbjct: 189 SKLCSTRGMSPEELQRAGEDVDDGGGYFIINGNERVIRFVVQQRTNFPIALKRPAFANRD 248
Query: 140 EGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDL 199
T AV++R R D +S + L +G L +E+ ++L+ L L
Sbjct: 249 AFCTPYAVLLRSQRYDGTSTSNILLDTEDGRCTYRILLNRQEHFCSFFLLLRCLAGNLSL 308
Query: 200 EIFNH--LTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQC--LQHIGEHF 255
L C+ + A + S+ V+ I + + + L+ L +G F
Sbjct: 309 AQLKAKLLEGCWSD-------AAEATDRSQLVEQIWGQEPTFADSDVLENRPLHQLGLIF 361
Query: 256 QPVIDGL--QSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNP 313
+ L SY A VIR ++ HL++ ++KF++ + M +KL L +++
Sbjct: 362 WKGVSWLLRPGSSYEAAGTYVIRHFVLPHLDNWSEKFDMALLMYKKLRLLKQGKISAESL 421
Query: 314 DSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEI---ENNGK-------KFDFFNL 363
DS QE++LPG +++ LK+ L L K + EI +N+G FF+L
Sbjct: 422 DSFAYQEVVLPGQILSSVLKDALFSCLAKIRLHYLQEIRMLKNSGNDPTSAIYSNKFFDL 481
Query: 364 ANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRA 423
A + E I + + TG + T T LDLQQ +G+TV A+RLN RF+S FRA
Sbjct: 482 ATDRCCPE------IAQKLSYFMATGNIRT-TQLDLQQLSGWTVTADRLNVHRFLSHFRA 534
Query: 424 VHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMT-STCRVASYYDSRG-- 480
VHRG F ++TTSVRKLL E+WGFLCPVHTPDG PCGLL H+T S VA D R
Sbjct: 535 VHRGQFFTTMKTTSVRKLLGETWGFLCPVHTPDGAPCGLLLHLTQSAAPVALPPDRRAIA 594
Query: 481 NIRDFSKMRTSILRVLIGVGMIP-----------SLPKLVKSGPPA-------------- 515
+IR F + + L G+ +P S P ++ GP
Sbjct: 595 SIRLFLH-KQGVCVDLEGISGLPPSDLGASVRHASRPPALQVGPGGGRKEETLVAAASSC 653
Query: 516 -VLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYL 574
+++DG VV + + + R LK A EV P S GG +++
Sbjct: 654 GTFPLVVDGTVVCRLDRKDFACWLEKFRDLKSREAEDFKQHWEVVGFPHS-GGNLESIFI 712
Query: 575 FTSPPKF------------------VRPVRNISL-PSEESQNIELIGPFEQVFMEI---- 611
FT P + ++P I+ PS+ +N L+ E V +I
Sbjct: 713 FTFPGRLVRPVRHIKSGRIEYIGPLMQPWAAIACRPSDVKRNDRLLHLQEPVISQIVSSS 772
Query: 612 RCPDGGDGGRRNAF-----------------------------------------PATHE 630
C GR +A P +E
Sbjct: 773 PCSTDDLAGRFHALSLGAQAGESEDGEETAAKAKRFPLVAAREASGVDALFSFNAPVRYE 832
Query: 631 --EIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTP 688
E+ + LS+ A+LTPYS HNQSPRN+YQCQM KQTMG ++ +R D K Y L TP
Sbjct: 833 YVELKSSAFLSIAASLTPYSHHNQSPRNIYQCQMLKQTMGTPFHSVPYRHDNKAYRLITP 892
Query: 689 QTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTE 748
Q P+VRT Y ++ D+YP+G NA+VAV+ YTG+DMEDAMILNK S++RG HG +Y+T+
Sbjct: 893 QRPLVRTEDYRRFDFDDYPSGVNAVVAVMCYTGFDMEDAMILNKGSMERGAFHGCVYKTK 952
Query: 749 TID-LSDDGNKVDRGQKLFRR-NKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKT-- 804
+D Q F N+ + ++ +D+DG P +G I G YC + +
Sbjct: 953 VVDAAPASARAGAASQYTFSNVNEFGRKHNATLDADGFPAIGAKIDKGSTYCRVQTSSSS 1012
Query: 805 ---TNSWRTNSRKGSESVFVD---YVAVDMKNSKNLPQ------KANIRFRHTRNPIIGD 852
N+ ++ K E+ +VD Y++ + L + +A++R R R P+IGD
Sbjct: 1013 SSFANNGIQHAYKDGETAYVDGVTYISPPDSAHERLAKLGLKGCRASLRLRCVRKPVIGD 1072
Query: 853 KFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
KF+SRHGQKG+ S LWP DMPF+ +G+ PD++ NPH FPSRMTI ML+ES+A K
Sbjct: 1073 KFASRHGQKGILSMLWPHEDMPFT-ESGLVPDILFNPHGFPSRMTIGMLIESMAGK 1127
>gi|449299920|gb|EMC95933.1| hypothetical protein BAUCODRAFT_34698 [Baudoinia compniacensis UAMH
10762]
Length = 1702
Score = 459 bits (1181), Expect = e-126, Method: Compositional matrix adjust.
Identities = 260/646 (40%), Positives = 382/646 (59%), Gaps = 61/646 (9%)
Query: 38 CRQAKISYTGKLMADVEFQYLDA-GSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
CR+ ++Y G+ E++ D VRE FGQ P+ML++ RCHL+G ++LV
Sbjct: 125 CRERHVTYRGRFRGRFEYRVNDGQWKESVRE---FGQLPIMLRSNRCHLEGLSPKQLVDC 181
Query: 97 KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQ 156
+EE E+GGYFI+NG+E++ R +I+ ++N+PM+++R SF +R YT + IR VR DQ
Sbjct: 182 REETEELGGYFIVNGIEKLIRMLIVNRRNFPMAIIRPSFENRGPTYTKYGIQIRSVRPDQ 241
Query: 157 SSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKE 216
+S T L+YL +G+V F + EYL+PV ++LKALV+T D EI+ + D K
Sbjct: 242 TSQTNVLHYLSDGNVTFRFSWRKNEYLVPVVMILKALVETTDREIYEGVVGPADTK---- 297
Query: 217 KGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIR 276
G V++RV+++L Q L R Q ++G F+ V+ S + +R
Sbjct: 298 -GLEAKQFVTDRVELLLRTYQAYQLYNRDQTKAYLGSKFRIVLGVPDDMSDESAGAEFLR 356
Query: 277 DYIFVHLN-------DNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
+ HL +N DK +L+FM++KL++L + + DNPD++ +QEILLPG L
Sbjct: 357 KIVLPHLGCFDVTEANNEDKARMLLFMIRKLYALAEGECMVDNPDTVSSQEILLPGALYG 416
Query: 330 IYLKEKLEDWLRKGKKLIQDEIENN------GKKF--DFFNLANIKKVMEKNPSKQIGTS 381
+ +KE+LE+WL ++D NN ++F DF + KV+ K ++ +G +
Sbjct: 417 MIIKERLEEWLTSIGAQLRDWSRNNQYPSFTSREFERDF-----MSKVLRKT-NENLGQA 470
Query: 382 IETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKL 441
++ L TG L + TGLDLQQ +GYTV AE++NF RFIS FR VHRG+ FA L+TT+VRKL
Sbjct: 471 LDYFLSTGNLVSPTGLDLQQVSGYTVVAEKINFYRFISHFRMVHRGSFFAELKTTTVRKL 530
Query: 442 LPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGM 501
LPESWGFLCPVHTPDG PCGLLNH++ C+VA+ S ++I ++ +G+
Sbjct: 531 LPESWGFLCPVHTPDGAPCGLLNHLSHKCKVATE----------SADVSNIPHLIAQLGV 580
Query: 502 IPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYV 561
+ S + + V LDGR++G + + + LR KV + +P DLEVG++
Sbjct: 581 VSSSAASLS----DSVVVQLDGRILGFCTPKQAKVIGDTLRYWKVEGSHGVPLDLEVGFI 636
Query: 562 PLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPD----GG 617
P S GG YPG+Y+F+SP + +RPV+ + L + +G FEQ FM I C + G
Sbjct: 637 PSSNGGQYPGVYMFSSPARMLRPVKYLPL-----DKTDYVGAFEQPFMSIACTEPEIVSG 691
Query: 618 DGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMA 663
D +TH E PT +LS+VAN TP+ D NQSPRNMYQC A
Sbjct: 692 D--------STHVEYDPTNILSIVANQTPFPDFNQSPRNMYQCLSA 729
Score = 246 bits (628), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 134/280 (47%), Positives = 175/280 (62%), Gaps = 21/280 (7%)
Query: 649 DHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPT 708
D Q P CQM KQTMG ALK+R D K Y LQT QTP+VR Y +YG+D +P
Sbjct: 1199 DAAQKPFFTGNCQMGKQTMGTPGTALKYRTDNKTYRLQTGQTPVVRPPLYNEYGLDNFPN 1258
Query: 709 GTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKV-DRGQKLFR 767
GTNA+VAV+AYTGYDM+DAMILNKS+ +RG HG +Y+T+ IDLS+D + RG K+
Sbjct: 1259 GTNAVVAVIAYTGYDMDDAMILNKSAHERGFGHGTVYKTKKIDLSEDSKQTRGRGSKVVS 1318
Query: 768 RNKDA------KSLHSVIDSDGLPYVGQMIHPGE----PYCSIYDKTTNSW-------RT 810
A + +D DG VG + G+ + +D + N +
Sbjct: 1319 MFGFAPGGLMKAQWKNTLDDDGFAAVGMKVKEGDIIAASHSVTWDPSANEYVNRDGITHL 1378
Query: 811 NSRKGSESVFVDYVA-VDMKNSKNLPQKA-NIRFRHTRNPIIGDKFSSRHGQKGVCSQLW 868
+ K E FV+ + + + S N P +A +IRFR R+P+IGDKFSSRHGQKGVCSQ W
Sbjct: 1379 HRYKEPEEAFVEEIKIIGSELSDNTPSQAVSIRFRIPRSPVIGDKFSSRHGQKGVCSQKW 1438
Query: 869 PDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
P I+MPF+ +G++PD+IINPHAFPSRMTI M +ES+A K
Sbjct: 1439 PSINMPFT-ESGIQPDIIINPHAFPSRMTIGMFVESLAGK 1477
>gi|327265571|ref|XP_003217581.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2-like, partial
[Anolis carolinensis]
Length = 692
Score = 459 bits (1181), Expect = e-126, Method: Compositional matrix adjust.
Identities = 249/519 (47%), Positives = 323/519 (62%), Gaps = 32/519 (6%)
Query: 396 GLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTP 455
GL + Q +G +V A++LNF+R++S FR VHRGA F +RTT+VRKLLPESWGFLCPVHTP
Sbjct: 2 GLGMLQTSGLSVMADKLNFVRYLSHFRCVHRGADFIKMRTTTVRKLLPESWGFLCPVHTP 61
Query: 456 DGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPS--LPKLVKSGP 513
DGEPCGL+NH+T+ C + + S TS+ +L +G+ P+ +P S
Sbjct: 62 DGEPCGLMNHLTAPCEIVTQ----------SLFTTSLPSLLCSLGVTPTDGVPNQPYS-- 109
Query: 514 PAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGA-YPGL 572
V LDG +VG I +V LR K IP EV +P++ + YPGL
Sbjct: 110 -ECYPVTLDGSLVGWIEKDLAPGLVETLRHCKAMQEKKIPVWTEVVLIPMTGKPSLYPGL 168
Query: 573 YLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEI 632
++FT+P + +RPVRN++L EE IG EQVFM I + TH+E+
Sbjct: 169 FIFTTPCRMMRPVRNLALGKEE-----WIGTMEQVFMNIAVLEN----EIELGLTTHQEL 219
Query: 633 HPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPI 692
P MLSVVAN P+SDHNQSPRNMYQCQM KQTMGF + +R D KLY LQTPQ+P+
Sbjct: 220 FPHSMLSVVANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTFPYRTDDKLYRLQTPQSPL 279
Query: 693 VRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDL 752
VR Y Y +D YP GTNAIVAV++Y+GYDMEDAMILNKSS +RG HG IY+TE IDL
Sbjct: 280 VRPAMYDHYDMDSYPIGTNAIVAVISYSGYDMEDAMILNKSSWERGFAHGSIYKTERIDL 339
Query: 753 SDDGNKVDRGQK--LFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRT 810
++ K+ +G+ +F D + +D+DGLP +G + G+PY S + T
Sbjct: 340 TE---KIKQGEDNLVFGIGPDRAATLKNLDADGLPPIGSRLQYGDPYYSYLNLNTGESFV 396
Query: 811 NSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHTRNPIIGDKFSSRHGQKGVCSQLWP 869
K E VD + V ++ + K I R RNP IGDKF+SRHGQKG+ S+LWP
Sbjct: 397 TYHKNKEVCVVDNIKVCSNDTGSGQFKCVCITLRVPRNPTIGDKFASRHGQKGILSRLWP 456
Query: 870 DIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
DMPF+ +GM PD++ NPH FPSRMTI ML+ES+A K
Sbjct: 457 AEDMPFTE-SGMMPDILFNPHGFPSRMTIGMLIESMAGK 494
>gi|156084478|ref|XP_001609722.1| DNA-directed RNA polymerase, beta subunit [Babesia bovis T2Bo]
gi|154796974|gb|EDO06154.1| DNA-directed RNA polymerase, beta subunit, putative [Babesia bovis]
Length = 1283
Score = 455 bits (1170), Expect = e-125, Method: Compositional matrix adjust.
Identities = 309/971 (31%), Positives = 479/971 (49%), Gaps = 124/971 (12%)
Query: 37 HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
H + A +Y L+ + + S V+ + G P+M+K++RC+L G +++V
Sbjct: 101 HAKIAHTTYESSLIVKFGLK-IPGTSKVLTKELTVGYIPIMVKSKRCNLDGISPEEMVEQ 159
Query: 97 KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRC-VRKD 155
E+ E GGYF++ G ER+ R +I+ + NYP+++ + R + +TD ++++R D
Sbjct: 160 GEDIDEPGGYFVVRGNERIVRQLIVLRSNYPLAIKSGNNRTKHVLFTDYSIMMRSQCHDD 219
Query: 156 QSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVD-TNDLEIFNHLT--CCYDEK 212
SV LY +N ++G L+P G++L+A + +D E+ L DE
Sbjct: 220 GCSVNNVLYLTVNKRCMFRTIVKGSVQLIPFGVLLRATMPLMSDEELKQKLLQDTLGDEA 279
Query: 213 YKKEKGAVGSPLVSERVKIILAEVQDLSLTTRL--QCLQHIGEHFQPVIDGLQSESYYAV 270
LV I ++++ RL C + ++ P +Y
Sbjct: 280 LTVYYQRFFLDLVEREPDICDIDLKENRHLYRLGSACWSQVNQYLHP------GATYEEC 333
Query: 271 AETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITI 330
+R Y+ + N +KF L++M +KL + ++N DS QE+LLPG + +
Sbjct: 334 GAYFLRHYVLLQAKTNAEKFETLLYMFKKLIKVSRGEIQTENYDSFAFQELLLPGQIYSC 393
Query: 331 YLKEKL------------EDWLRKGKKLIQDEIENNGKKFDFFNLAN------------- 365
LKE L + L K + D ++ ++ +L +
Sbjct: 394 ILKESLYVALLKIRSIYHAELLELCKNISGDATRHSKRRLIDVDLQSHEQKELLEKLLEK 453
Query: 366 -------IKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFI 418
++KV P K + + L TG AT +L Q +G TV AER+N+ RF+
Sbjct: 454 PELFSYAVEKVASDIPKK-----LHSFLATGN-ATNMHFELTQSSGLTVVAERINYHRFM 507
Query: 419 SFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDS 478
S FR++HRG+ FA +R+T VRKLL E+WGF+CPVHTPDG PCGLL H+ + D
Sbjct: 508 SHFRSLHRGSLFAKMRSTEVRKLLGETWGFICPVHTPDGAPCGLLLHLAQYAVPVTATDC 567
Query: 479 RGNIRDFSKMRTSILRV---LIGVGMIPSLPKLVKSGPPAV--LSVLLDGRVVGVIPSSE 533
G ++ S+LR + ++ V + + V++DG + +P +E
Sbjct: 568 EGA----AEAVKSLLRTHGYSVDFTGHETVTDFVTHDAQHIKRIHVIVDGVPMCTLPINE 623
Query: 534 IEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSE 593
K+ ++ K + + E+ P + G Y + + T P + +RPV I L S
Sbjct: 624 APKLYDEIKLAKRYGKFGLKEHYEIVASP-DVKGEYTSIMILTYPGRVIRPV--ICLTSG 680
Query: 594 ESQNIELIGPFEQVFMEIRCPD------------GGDGGRR------------------- 622
E IE IGP Q++ I + +G +
Sbjct: 681 E---IEWIGPITQLWSTIAVSEEEARISHQMVASNAEGKCKTLSIDEALMHDNSSDHAVS 737
Query: 623 ------NAFPATHE--EIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQAL 674
+ P ++ E+ P+ +LSV A LTP+S+HNQSPRNMYQCQM KQ+MG
Sbjct: 738 PVKKVIDNVPVKYDYMEVSPSAILSVTAALTPFSNHNQSPRNMYQCQMLKQSMGVPYHCE 797
Query: 675 KFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSS 734
+FR+D K Y L PQ P+V T + + ++YPTG NA+VAV+A+TG+DMEDAMI+NKSS
Sbjct: 798 QFRSDVKAYRLLFPQKPLVTTTEFRQMNYEDYPTGMNAVVAVIAHTGFDMEDAMIINKSS 857
Query: 735 VDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKD--AKSLHSVIDSDGLPYVGQMIH 792
+DRG HG IY+++ ID + N RG + + N + + + +D DGLP VG +
Sbjct: 858 LDRGAFHGCIYKSKVID-AMPANGRSRGNQHYFANTNHLGSKIIASLDKDGLPNVGARVK 916
Query: 793 PGEPYCSI--YDKTTNSWRTNSR---KGSESVFVDYVAV---------DMKNSKNLP-QK 837
G P C I ++K S + + R E VD V + +M N+ N+ +
Sbjct: 917 KGTPICRIESHEKVGGSKQISDRVEKYHDEDAIVDQVTIIGCNDASVAEMPNASNIKGTR 976
Query: 838 ANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMT 897
A I+FR RNPI+GDKF+SRHGQKG+ S WP +MPF +G+ PD+I NPH PSRMT
Sbjct: 977 ATIKFRIVRNPIVGDKFASRHGQKGILSMAWPAENMPFLE-SGIIPDIIFNPHGLPSRMT 1035
Query: 898 IAMLLESVAAK 908
I L+E +A K
Sbjct: 1036 IGKLIECMAGK 1046
>gi|332028507|gb|EGI68546.1| DNA-directed RNA polymerase I subunit RPA2 [Acromyrmex echinatior]
Length = 764
Score = 454 bits (1168), Expect = e-125, Method: Compositional matrix adjust.
Identities = 258/691 (37%), Positives = 401/691 (58%), Gaps = 50/691 (7%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CRQ +Y GK++A + + ++ E+ + G+ P+M+K+ RC+L + ++L++
Sbjct: 95 CRQRGSTYKGKIIARLGWS-VNGKEQEPLEK-DLGEVPIMVKSNRCNLNNMNPEELIAHG 152
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
E E GGYFI+ GLER+ R +I+ ++NYP+++ R +++ R + +++ +++R VR+D S
Sbjct: 153 EHEQEWGGYFIIRGLERLIRMLIMTRRNYPIAVKRPTWKGRGDHFSELGILLRSVREDNS 212
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTC-CYDEKYKKE 216
S+ L+++ +GS +L F + Y +P+ ++LK L+D DL I+ L C D+ Y
Sbjct: 213 SINNTLHFVTDGSAKLAFTYKKATYFVPLILILKCLIDVTDLYIYKALIAGCEDDLY--- 269
Query: 217 KGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESY-YAVAETVI 275
+ + +L V + L QC +IG+ F+ L +++ V + +I
Sbjct: 270 --------YNNSIINMLRAVHEEGLHWHEQCKAYIGKMFKVKFSELPTDATDIDVCDYII 321
Query: 276 RDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEK 335
+ I +HL++ DKF+LL+FM +KLF+L ++ + D++ QE LL GHL LKEK
Sbjct: 322 KYCISIHLDEPIDKFHLLVFMTKKLFTLANNKCAVEGADAVMMQECLLGGHLYLQVLKEK 381
Query: 336 LEDWL--RKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLAT 393
L WL K L +D+ N + N+ K I + +E L TG + +
Sbjct: 382 LYSWLVGLKHHILKRDKSAGNRYSLSIQEMLNVTKF-----RSNIDSQMEYFLSTGSVRS 436
Query: 394 QTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVH 453
+GL L Q G T+ E +N +R++S FRA+HRGA F +RTT R+LLP++WGF+CP+H
Sbjct: 437 SSGLGLMQTTGLTIVVENINRMRYMSHFRAIHRGAFFQEMRTTEARQLLPDAWGFICPIH 496
Query: 454 TPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIP-SLPKLVKSG 512
TPDG PCGLLNH+T C + + D K++ +I VL+ +GMIP S+ K+
Sbjct: 497 TPDGAPCGLLNHLTMNCIITKHAD--------PKLKAAIPAVLVDLGMIPLSIADDWKNS 548
Query: 513 PPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVP-LSLGGAYPG 571
+V+LDG+++G+I I KVV LR LK+ + IP LE+ +VP ++ YPG
Sbjct: 549 ----YNVMLDGKLIGLIEDKIINKVVYKLRLLKIKSRE-IPSTLEIAFVPKKNVPAQYPG 603
Query: 572 LYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC--PDGGDGGRRNAFPATH 629
L+LFT+ + +RPV N+++ Q IELIG FEQ++MEI C P G TH
Sbjct: 604 LFLFTNAARMMRPVINLAM-----QKIELIGTFEQIYMEI-CVNPQEAYEGL-----TTH 652
Query: 630 EEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQ 689
+EI T + S +ANL P D NQSPRNMYQCQM KQTM + ++ K+Y LQTP
Sbjct: 653 QEISQTTIFSNLANLIPLPDCNQSPRNMYQCQMGKQTMATPCHNWQQQSQTKMYRLQTPA 712
Query: 690 TPIVRTNTYTKYGIDEYPTGTNAIVAVLAYT 720
TP+ R Y +D++ GTNAI+AV+AYT
Sbjct: 713 TPLFRPVHYDNINMDDFAMGTNAIIAVIAYT 743
>gi|429962259|gb|ELA41803.1| hypothetical protein VICG_01155 [Vittaforma corneae ATCC 50505]
Length = 1066
Score = 452 bits (1164), Expect = e-124, Method: Compositional matrix adjust.
Identities = 308/901 (34%), Positives = 460/901 (51%), Gaps = 122/901 (13%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR+ ++Y G + ++ +Y G+ + E + G FPVML++ C+L G SQ L L
Sbjct: 74 CREQNLTYGGSVFLKIKLEY--RGNVIFNEYKDAGVFPVMLRSCMCNLNG--SQNLYELG 129
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
E+ E GGYFI++G +R+ R + K+N+ + + S + YTD +V IR V ++Q
Sbjct: 130 EDPKEPGGYFIIDGYDRMVRFHVAQKRNFIFAHQKKS---KDSTYTDYSVSIRSVSEEQI 186
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
++ Y +G++ ++ + YL+PV ++L+AL + D EIF
Sbjct: 187 GQKNEIKYCADGNMHFKIYVNKRVYLIPVTLLLRALANCTDEEIF--------------- 231
Query: 218 GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRD 277
A+GS +R+ +LA ++D ++ +CL ++G F+P+ L+ E+Y I
Sbjct: 232 VALGS---DQRILAMLARMKDYPCYSQKECLDYLGARFKPI---LKIENYEECGRHFIDR 285
Query: 278 YIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLE 337
+ HL+ DK+ L+I ++KLF D D+ D N E+ LI I +EKL
Sbjct: 286 VVLPHLSKFEDKYLLIIEAIKKLFRCYDGKIQPDDVDVPSNFELYTELQLIPICFREKLN 345
Query: 338 D----WLRKGKKLIQDEIENNGKKFDF--------------FNLANIKKVMEKNPSKQIG 379
+ ++ K +++ + F L IKK E + IG
Sbjct: 346 EIKRSFMTKIMYFLRNRVSTTDSTTSFNVSEAAELTGELSDLQLEKIKKHFE-SLDFDIG 404
Query: 380 TSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVR 439
++ L TG + T DL Q + +TV AER+N RF S F +V RG F+ L+ TS+R
Sbjct: 405 LKMKRFLSTGNITTVCCSDLLQNSSFTVLAERINIWRFTSHFASVSRGTFFSNLKITSIR 464
Query: 440 KLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVA--SYYDSRGNIRDFSKMRTSILRVLI 497
KL PESWGF CP++TPDG PCGLL H++ +C V+ SY F M +L
Sbjct: 465 KLRPESWGFFCPINTPDGAPCGLLFHLSQSCFVSDKSYV--------FDDM------ILY 510
Query: 498 GVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLE 557
G++ + +G P V +G++ G +++ + LR + + E
Sbjct: 511 DFGVVAP-HRGYNTGVP----VFYNGKLSGT--TNDPSGLAKSLREYRAKSGLCFEVCYE 563
Query: 558 VGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPD-- 615
G G + +F S R V N+ L E E IG EQVF+ I+
Sbjct: 564 YG------KGIDESVCIFDSYSNLYRKVFNVRLKRE-----EWIGLKEQVFLNIKLSKYV 612
Query: 616 --------GGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTM 667
+ + F + EI T + S +A P+SDHN SPRNMYQCQM KQ M
Sbjct: 613 TKDAYSKYDREAENEDTFEFEYREIDNTNIFSSIAACIPFSDHNPSPRNMYQCQMTKQAM 672
Query: 668 GFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDA 727
G + +FR D K + + Q+P+VRT Y+ + +E+P G N IVAVL+YT YDMEDA
Sbjct: 673 GVACFNQQFRTDGKNFFVSYLQSPMVRTGAYSTF--EEFPIGINCIVAVLSYTAYDMEDA 730
Query: 728 MILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYV 787
+++NKSS +RG+ IY+ E +L + + +D F K A+ I++D + +
Sbjct: 731 VVINKSSTERGLFGAFIYKNEKFELEKNAH-ID-----FTPFKGAR-----IETDDV--L 777
Query: 788 GQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRN 847
+ +HP D T RT G+ES FV+ V + S+++P I R RN
Sbjct: 778 VRYVHP--------DLGT---RTIKYHGAESGFVEAVRI---FSRDVPC-VTITLRIQRN 822
Query: 848 PIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAA 907
P IGDKF SRHGQKGVCS W +IDMPF+ G+RPD+IINPHAFPSRMTI MLLES+
Sbjct: 823 PTIGDKFCSRHGQKGVCSMFWQEIDMPFTEY-GLRPDIIINPHAFPSRMTIGMLLESICG 881
Query: 908 K 908
K
Sbjct: 882 K 882
>gi|162605772|ref|XP_001713401.1| DNA-directed RNA polymerase I 135K chain [Guillardia theta]
gi|13794333|gb|AAK39710.1|AF083031_67 DNA-directed RNA polymerase I 135K chain [Guillardia theta]
Length = 1109
Score = 451 bits (1159), Expect = e-123, Method: Compositional matrix adjust.
Identities = 300/900 (33%), Positives = 468/900 (52%), Gaps = 86/900 (9%)
Query: 39 RQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKE 98
++ KI+Y G+ + + Q + +V + G FP+M+K+ +C+L G +L + E
Sbjct: 77 KELKITYQGEFIISINIQNNEKNFNLVYKE---GDFPIMIKSLKCNLFGLKPHQLTEIDE 133
Query: 99 EAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSS 158
E E GGYFI NG E++ R +I+P++NY + + S R + ++ A IRCV + S
Sbjct: 134 EEFENGGYFITNGTEKLIRLIIVPRRNYIFTSSKISNTLRGKNFSSFACSIRCVNRYGLS 193
Query: 159 VTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLT-CCYDEKYKKEK 217
T L+YL NGS+ F ++ +E+ PV I+LKA+ D +D EIF +T +D KE
Sbjct: 194 RTFHLHYLTNGSILCRFIIRNQEFFFPVVIILKAIKDVSDTEIFKDITNNLHDNNMFKE- 252
Query: 218 GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRD 277
V L+S+ I + +D L++IG+ F+ + + + +I +
Sbjct: 253 --VAIKLISDSYNYIKSNFRD-------NYLEYIGKLFKIFEKKIHLNN-LETGKNLIEN 302
Query: 278 YIFVHL-NDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKL 336
+F+H+ ND N K+ LLI+M+QKL ++ +NPDS++ QEILL G+LI L++KL
Sbjct: 303 NLFIHVENDMNQKYLLLIYMIQKLIKSRMGLNLGENPDSIEFQEILLSGNLIGSILEKKL 362
Query: 337 EDWLRKGKKLIQDEIENNGKKFDFFNLAN-----IKKVMEKNPSKQIGTSIETMLKTGRL 391
LI+ + +F N+ N K +M+ + +G I ++ +G +
Sbjct: 363 S----ANFDLIKID--------EFMNIENSPIRKTKLIMKVFSNFSVG--IRYLISSGNV 408
Query: 392 ATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCP 451
++ Q +G+ + ER N+ RF+SFFR++HRG F L+TTS RKL+P +WG+LCP
Sbjct: 409 PLIVNFEIPQTSGFNISIERNNYSRFLSFFRSIHRGKYFTTLKTTSGRKLMPSNWGYLCP 468
Query: 452 VHTPDGEPCGLLNHMT--STCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLV 509
+HTPDG CG+LNH+T S V + + ++ F K +T R+
Sbjct: 469 IHTPDGSLCGILNHLTISSITSVVNPIERINFLKYFKKHKTIFDRL-------------- 514
Query: 510 KSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAY 569
S +LLDG+++G ++ +R KVS + + +E+ +
Sbjct: 515 -SFKNRTSIILLDGKIIGFSTEIFLKWFTDKIRCEKVSDFGIFSNSIEIVCLKNENILNL 573
Query: 570 PGLYLFTSPPKFVRPVR----NISLPSEESQN----------IELIGPFEQVFMEIRCPD 615
L +++S + +RPVR N + S+N IELIG EQ ++ I
Sbjct: 574 FELKIYSSEARLLRPVRWNSFNSNFNKTNSKNESSFTYNFHTIELIGSLEQSYLNIHQSI 633
Query: 616 GGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALK 675
G TH EI + S+V TP+ D NQSPRNMYQCQMAKQ++G +
Sbjct: 634 FTKKGEI-CLLYTHYEIDNLNIFSIVPGCTPFFDMNQSPRNMYQCQMAKQSIGIPFHNIW 692
Query: 676 FRADQKLYHLQTPQTPIVRTNTYTK-YGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSS 734
+ D K+Y L + Q PI R G+D + G NA+V VL+Y+ +DMEDA++ NKSS
Sbjct: 693 RKMDSKIYFLFSVQIPICRNKINQDGLGLDNFINGFNAVVGVLSYSSFDMEDAVVFNKSS 752
Query: 735 VDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPG 794
++RG+ IY T D++ K NK+ +LH DG+ VG +
Sbjct: 753 IERGLGMSYIYNTSNFDVNLSMIK--------NLNKNYSTLHYNC-LDGICNVGNALKKK 803
Query: 795 EPYCSIYDKTTNS----WRTNSRKGSESVFVDYVAVDMKNSKNLPQKAN--IRFRHTRNP 848
+ + +K N+ T + E VD V + +KN + K N IR + R P
Sbjct: 804 DIIL-LNNKLVNNKLVRETTINYNNDEIASVDCVKI-LKNYSKIQSKHNVMIRLKSKRKP 861
Query: 849 IIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
I GDKF+SRHGQKG+ S + ++PFS TG+ PD++ NPH FPSRMTI M++ES++ K
Sbjct: 862 IEGDKFASRHGQKGILSFKYEVENLPFSE-TGIIPDILFNPHGFPSRMTIGMVIESLSGK 920
>gi|290976959|ref|XP_002671206.1| predicted protein [Naegleria gruberi]
gi|284084773|gb|EFC38462.1| predicted protein [Naegleria gruberi]
Length = 1069
Score = 449 bits (1155), Expect = e-123, Method: Compositional matrix adjust.
Identities = 309/901 (34%), Positives = 471/901 (52%), Gaps = 83/901 (9%)
Query: 39 RQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQ----FPVMLKTRRCHLQGADSQKLV 94
R A ++Y G L A + + + G+ ER Q FPVM+ + C+L ++ +
Sbjct: 7 RIAGVNYGGSLKATILLKNEETGA---IERIPDIQLMEDFPVMINSSFCNLPKLSPKQKM 63
Query: 95 SLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRK 154
EE E GGYF++ G E V+R + + N+P ++ R S+ +E +TDK +++RC R
Sbjct: 64 LQGEEEHESGGYFVVRGSEVVYRLLTQQRANFPFAITRPSWMGYKEDFTDKGILVRC-RH 122
Query: 155 DQSSVT--LKLYYLLNGSVRLGFWLQGKEYLLPVGIVL--KALVDTNDLEIFNHLTCCYD 210
++ +T + ++Y +G V F G + IVL KAL + +D ++F LT
Sbjct: 123 PKTLITRLVNIHYRRDGVV---FMRAGNPVPFYINIVLALKALRECSDRDLFLLLT---- 175
Query: 211 EKYKKEKGAVGSPLVSERVKIILAEVQDL--SLTTRLQCLQHIGEHFQPVIDGLQSESYY 268
+ + +RV +L + + ++ TR + +G + P GL+
Sbjct: 176 -------AGTKNKVTLDRVVELLGDFRKTFPTVQTREDAIIALGTIYDP--HGLRR---- 222
Query: 269 AVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLI 328
+ E V ++ + + +KF+ L++ +QKL+ VD +N D N E+L G ++
Sbjct: 223 -LEEPVDKNKL---IKSGYEKFDFLVYCVQKLYKFVDGEIAEENLDDFDNHELLTVGEVL 278
Query: 329 T------IYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSI 382
+ IY K +L K L++ + LA + + SK I
Sbjct: 279 SNVIPLIIYNKIQLAHG-TCAKLLMKSATTMQPDMLEQKYLALFRDKCKSILSKACPNDI 337
Query: 383 ETMLKTGRLATQTGL--DLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRK 440
+ G ++ +L Q + ER+NFLR IS FRA HRG +F +T +R+
Sbjct: 338 NRLFSVGDVSVSAPFRPELSQTRALFTKLERINFLRVISHFRATHRGIAFLDSNSTRMRR 397
Query: 441 LLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVG 500
L P WGF+CPVH+PDG CGL+NH++ T + ++ +R S++ + + +G
Sbjct: 398 LTPSFWGFICPVHSPDGHLCGLVNHLSQTTEIVTHQAKPKELR-------SVVEMCLKLG 450
Query: 501 MIPS-LPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVG 559
M+PS K + V+LDG ++G + +++ + LR KVS +P +E+
Sbjct: 451 MLPSSTEKCISVSIEDEAPVMLDGAIIGKVSHDKLQNLADQLRYCKVSGKYGLPKFMEIA 510
Query: 560 YVP--LSLGGAY-PGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDG 616
P ++ Y P L +FT + VRPVR LP+ + E IG EQVFM I
Sbjct: 511 CQPKYSAMDIPYLPQLNIFTDIARAVRPVR--YLPTGQD---EWIGSAEQVFMNIAVT-- 563
Query: 617 GDGGRRNAFP-ATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALK 675
+ P TH EI PT +S + NLTP+ + NQSPR +YQCQMAKQ+M ++
Sbjct: 564 ----VEDIKPNTTHMEIDPTNFMSFLGNLTPFCNFNQSPRCIYQCQMAKQSMAAVFHSVD 619
Query: 676 FRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSV 735
R D KL+ ++ PQ P+ RT T DE+ G NA+VAV++YTGYDMEDAMI+NK+S
Sbjct: 620 HRVDTKLFDMKLPQKPLTRTKHQTDLPFDEFNNGCNAVVAVISYTGYDMEDAMIMNKTSY 679
Query: 736 DRGMCHGQIYQTETIDLSDD----GNKV-DRGQKLFRRNKDAKSLHSVIDSDGLPYVGQM 790
+RGM HG +++TE IDL++ N+V D+ + + AK +D DGLP VG
Sbjct: 680 ERGMMHGTVFKTEDIDLTEGTAFLTNRVFDKTE--MDSDYQAKEFED-LDYDGLPEVGLP 736
Query: 791 IHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYV---AVDMKNSKNLPQKANIRFRHTRN 847
+ G + + YD + K +S V V A D + K + + A+I FR RN
Sbjct: 737 LDEGSIFANYYDPEKQKFMPMKWKDVDSATVHSVKVIATDPSDYKKV-KHASITFRLNRN 795
Query: 848 PIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAA 907
PIIGDKFSSRHGQKGV S LWP DMPF+ G+ PD++INPHAFPSRMTI ML+ES+++
Sbjct: 796 PIIGDKFSSRHGQKGVLSILWPQEDMPFTD-GGIVPDIVINPHAFPSRMTIGMLVESMSS 854
Query: 908 K 908
K
Sbjct: 855 K 855
>gi|313212713|emb|CBY36648.1| unnamed protein product [Oikopleura dioica]
Length = 1140
Score = 447 bits (1151), Expect = e-123, Method: Compositional matrix adjust.
Identities = 281/900 (31%), Positives = 454/900 (50%), Gaps = 115/900 (12%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CRQ K YT + L +G V + + Q P+M+ + +CHL+G ++LV+ K
Sbjct: 109 CRQKKTDYTAPVHVTFNLINLSSGETQVVTKKDLLQMPLMVMSSKCHLRGLSPEELVARK 168
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
E+ E+GGYFI +G E+V R + + + + + F
Sbjct: 169 EDHFEIGGYFIASGNEKVIRLLNMNRTRLVLDRLTELFV--------------------- 207
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
F++Q + + + + V++AL DLEI+ ++ +
Sbjct: 208 -----------------FYIQKQLFHVSMMTVVRALTSWTDLEIYREFMQTMSDEPNYDS 250
Query: 218 GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRD 277
+R+ L ++Q LT + +G+ F+ +S + ++
Sbjct: 251 AV-------KRMLKKLVKIQHHFLTQ----AKFLGQSFRIFDICPAWKSDVEAGQAFLKR 299
Query: 278 YIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLE 337
Y ++LN++ DK M +K F + +T +D+ DS ++ ++LLPGHL E E
Sbjct: 300 YCLIYLNNDEDKVRAFALMARKAFRISHNTCATDDIDSPESHDVLLPGHLFQSMTLEFFE 359
Query: 338 DWLRKGKKLI-----------QDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETML 386
+ R ++ DE+ N F + N+ + + ++
Sbjct: 360 SYQRSVSMIMAKEYSKQLEKGNDEVGQNMLSFAINKIGNMNQ------------HFKYLI 407
Query: 387 KTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESW 446
TG L T GL +QQ AG V AE++NF RF S FR +HRGA F +R TS RKL +W
Sbjct: 408 ATGNLKTNDGLGMQQLAGIVVGAEKINFARFYSHFRCIHRGAFFMEMRATSPRKLSTAAW 467
Query: 447 GFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLP 506
GF+CPVHTPDG PCGLLNH+ T R+ ++ + + +L+ +G+ P
Sbjct: 468 GFICPVHTPDGPPCGLLNHLAHTVRINVKRENTAKLEE----------LLLEIGVKPCSI 517
Query: 507 KLVKSGPPAVLSVLLDGRVVGVIPSS-EIEKVVAHLRRLKVSAASVIPDDLEVGYVPL-- 563
K + P V++DG+ +G I + + V +LRRLK S++ +PD LE+ + P
Sbjct: 518 KANEFDIP----VIIDGKQIGWIANGWRAQAVEKYLRRLKTSSSDRVPDTLEIVHCPAPE 573
Query: 564 SLGGA--YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGR 621
+ G A +PG+ L T P + RP+ N+ IE+IG EQV++ + +
Sbjct: 574 NKGEAVMFPGINLLTEPARMYRPLLNL-----REDKIEMIGIMEQVWLHVTV-----NQK 623
Query: 622 RNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQK 681
+ ++E++P +LS +A ++P+S+ N R + QCQMAKQT G+ L R+D K
Sbjct: 624 ESHELTEYQELYPAALLSELACMSPFSNMNAGARVILQCQMAKQTFGWPSYTLNHRSDNK 683
Query: 682 LYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCH 741
+Y + TPQ P+VR++ + +G+D+YP GTN ++AV++YTGYD+EDA ++K S +RGM +
Sbjct: 684 MYRILTPQEPLVRSHLHDSWGMDDYPLGTNVMIAVISYTGYDLEDATCVSKMSRERGMMY 743
Query: 742 GQIYQTETIDLSDDGNKVD--RGQKLFRRNK-DAKSLHSV-------IDSDGLPYVGQMI 791
G IY+T+ +DL D + G +L R++ D L + +D DGLP+ G +
Sbjct: 744 GTIYKTKMVDLQDTAQSMGYRSGLRLGCRDRFDPNELKAYRKIAGDKLDIDGLPFPGGIF 803
Query: 792 HPGEPYCSIYDKTTNSWRTNSRKG-SESVFVDYVAV--DMKNSKNLPQKANIRFRHTRNP 848
+ Y Y++ + +E V+ V V + + + Q+A I+FR R
Sbjct: 804 TYQDAYYCYYNEHEQKYSVGKYDSHAEDAIVESVRVFTNKRPQEGGFQQAAIQFRIARPI 863
Query: 849 IIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
IGDK +SRHGQKG+CS+LW DMP++ G+ PDLI NPH FPSRMT+ M++E +A K
Sbjct: 864 NIGDKMASRHGQKGICSRLWATTDMPWTE-NGIVPDLIFNPHGFPSRMTVGMMIEFIAGK 922
>gi|169600505|ref|XP_001793675.1| hypothetical protein SNOG_03089 [Phaeosphaeria nodorum SN15]
gi|160705450|gb|EAT89820.2| hypothetical protein SNOG_03089 [Phaeosphaeria nodorum SN15]
Length = 1616
Score = 441 bits (1133), Expect = e-120, Method: Compositional matrix adjust.
Identities = 251/644 (38%), Positives = 379/644 (58%), Gaps = 70/644 (10%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR+ +Y GKL A +E++ + E + G P+ML+ LV K
Sbjct: 123 CRERHATYRGKLRARLEWKVNNGD--WREEVCDLGAVPIMLR-------------LVKAK 167
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
EE+ E+GGYFI+NG+E++ R + + ++N+PM++ R +F +R GYT +++R +R DQ+
Sbjct: 168 EESEELGGYFIVNGIEKIIRMLQVNRRNFPMAIKRGAFTNRGPGYTQYGILLRSMRPDQT 227
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
S T L+YL +G+V L F + EYL+PV +VLK+LV+TND EIF L + EK
Sbjct: 228 SQTNALHYLSDGNVNLRFSWRKAEYLVPVMMVLKSLVETNDREIFEGLVGAAGSEGLAEK 287
Query: 218 GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRD 277
V++RV+++L + L ++ + ++G+ F+ V+ + S +R
Sbjct: 288 -----QFVTDRVELLLRTYKVYGLHSKAKTRAYLGQKFKVVLQIPEDTSDEEAGTEFLRR 342
Query: 278 YIFVHLN-------DNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITI 330
+ HL + DKF +L+FM++KL+SLV+ DNPD++QNQEILL G L +
Sbjct: 343 IVLPHLGAYHITPAQDADKFRMLLFMIRKLYSLVEGECCVDNPDAVQNQEILLGGQLYGM 402
Query: 331 YLKEKLEDWLRKGKKLIQDEIENNGKKFDF-------FNLANIKKVMEKNPSKQIGTSIE 383
+KE+L+DWL+ + ++QD G++ ++ F I K++ ++ + IG ++E
Sbjct: 403 IMKERLDDWLQSMRPVLQDW----GRRTEWRPFTSQEFQKDFISKILRRSQT-DIGRAME 457
Query: 384 TMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLP 443
L TG L + TGLDLQQ AG+ V AE++NF RFIS FR VHRGA FA L+TT+VRKLLP
Sbjct: 458 YFLSTGNLISPTGLDLQQTAGFVVVAEKINFYRFISHFRMVHRGAFFAELKTTTVRKLLP 517
Query: 444 ESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIP 503
ESWGF+CPVHTPDG PCGLLNH + C++A+ N+ D S +I +++ +G+
Sbjct: 518 ESWGFMCPVHTPDGAPCGLLNHFSHKCKLATQ-----NV-DVS----AIPKLVAQLGVSS 567
Query: 504 SLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPL 563
++ A + V LDGRV+G + + + LR KV + +P ++E+GYVP
Sbjct: 568 KSSASIE----ASVVVQLDGRVLGFCSPKQAKVIADTLRYWKVEGSHNVPLEMEIGYVPN 623
Query: 564 SLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDG----GDG 619
S GG YPG+Y+ + + RPV+ + L ++ +GPFEQ +M I C D GD
Sbjct: 624 SNGGQYPGVYMMSQVARMYRPVKYLPL-----DKLDYVGPFEQPYMSIACTDAEIVSGD- 677
Query: 620 GRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMA 663
+TH E PT + S+VAN+TP+SD NQSPRNMYQC A
Sbjct: 678 -------STHVEYDPTNIFSIVANMTPFSDFNQSPRNMYQCLSA 714
Score = 242 bits (617), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 132/278 (47%), Positives = 173/278 (62%), Gaps = 19/278 (6%)
Query: 649 DHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPT 708
D Q P CQM KQ+MG A+++R D K Y LQT QTP+VR + +YG D +P
Sbjct: 1116 DAAQKPFFTGNCQMGKQSMGTPGTAMRYRTDNKTYRLQTGQTPVVRPPLHNEYGFDNFPN 1175
Query: 709 GTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQ---KL 765
GTNA+VAV++YTGYDM+DAMILNKS+ +RG HG IY+T+ DL + + G+ KL
Sbjct: 1176 GTNAVVAVISYTGYDMDDAMILNKSAHERGFGHGTIYKTKICDLEEGARRNRSGRTISKL 1235
Query: 766 FRRNKDA---KSLHSVIDSDGLPYVGQMIHPGEPYCSI----YDKTTNSW-----RTN-- 811
F D+ S +D DGLP +G ++ G+ + YD ++ + TN
Sbjct: 1236 FGFAPDSLVPASRKETLDEDGLPRIGTLLRNGDAIAAWHTVSYDAASDDYVNRDANTNYF 1295
Query: 812 SRKGSESVFVDYVAVDMKNSKNLP-QKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPD 870
K E FV+ V + P QK +I+ R R+P+IGDKFSSRHGQKGVCSQ WP
Sbjct: 1296 KYKEDELAFVEEVRIIGSEDGTQPCQKLSIKLRVPRSPVIGDKFSSRHGQKGVCSQKWPS 1355
Query: 871 IDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
IDMPFS +G++PD+IINPHAFPSRMTI M +ES+A K
Sbjct: 1356 IDMPFS-ESGIQPDVIINPHAFPSRMTIGMFVESLAGK 1392
>gi|403224027|dbj|BAM42157.1| DNA-directed RNA polymerase [Theileria orientalis strain Shintoku]
Length = 1204
Score = 438 bits (1126), Expect = e-120, Method: Compositional matrix adjust.
Identities = 312/979 (31%), Positives = 478/979 (48%), Gaps = 140/979 (14%)
Query: 37 HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
H + + +Y L+ ++ ++ S + +E G PVM+++ RC+L+G +++V
Sbjct: 60 HAKISHTTYEAPLVVTFGIKFNESESIITKE-VPVGHIPVMVRSNRCNLKGLSGEEMVKQ 118
Query: 97 KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRK-D 155
E+A E GGYFI+ G ER+ R++I+P+ NYP++ S ++ +T+ A+ +RC D
Sbjct: 119 GEDADEPGGYFIIKGNERMIRNLIVPRSNYPIAFKSESNLNKNLLFTEYAIFMRCQSDLD 178
Query: 156 QSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFN-----------H 204
VT L+ N ++ L+P+ ++L+AL+ E F
Sbjct: 179 GCFVTNYLHLTTNKRCMFRVIVRNSTVLVPLFLLLRALMPYISEEEFRRKIMENCRNNRE 238
Query: 205 LTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQ--CLQHIGEHFQPVIDGL 262
+ Y+ Y A P++SE + +Q+ L RL C I ++ P
Sbjct: 239 MAVLYNIIYMDM--AHCDPVLSE-----IDFIQNRYLY-RLGKVCWSQINQYLHP----- 285
Query: 263 QSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEIL 322
++ A +I+ ++ +H N DKFN L+FML KL+ L S++ DS QEIL
Sbjct: 286 -GSTFEECALHLIKYFVVIHAASNTDKFNTLMFMLNKLYDLSQGNIQSESYDSFAFQEIL 344
Query: 323 LPGHLITIYLKEKLEDWLRKGKKLIQDEIEN---------NGKKFDF------------- 360
LPGH + LKE L L + + + EI N KK ++
Sbjct: 345 LPGHSYSCILKESLYLCLTRIRTIYNMEINNFLNHLKGGRGSKKRNYAGAEKMESEAGED 404
Query: 361 --------------FNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYT 406
FN A I KV + P K I+ L TG AT + +L Q +G+T
Sbjct: 405 QEGLIRNFMNSVQLFNFA-INKVAPEIPRK-----IQYFLSTGN-ATNSHYELNQNSGFT 457
Query: 407 VQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHM 466
+ +R+N+ RF S R+VHRG F + +T VRKLL E+WGF+CPVHTPDG PCGLL H+
Sbjct: 458 IVLDRINYHRFASHLRSVHRGNIFTKMHSTQVRKLLGETWGFICPVHTPDGAPCGLLLHL 517
Query: 467 TSTCRVA------SYYDSRGNIRDFSKMR-TSILRVLIGVGMIPSLPKLVKSGPPAVLSV 519
+ SY ++ I+ F K + T G G ++ G + +
Sbjct: 518 AQYAKAVTTPNRPSYLEA---IKAFLKSQSTHTTNYNAGNGNSYRDDGHLE-GKDGRIPL 573
Query: 520 LLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPP 579
++DG I ++E L+ K + E + G A +Y+ T P
Sbjct: 574 VVDGIPQCYINLRDVEGFYDSLKSAKNIEKYGMCAHFETCAIRDKYG-AVSCIYIMTFPG 632
Query: 580 KFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPD------------------------ 615
+ VRPV+N+ + IE IGP Q++ I +
Sbjct: 633 RLVRPVKNV-----KDNRIEYIGPITQLWSTIAINEDELNKSHEKLKNHKDESTSERDVT 687
Query: 616 --------GGDGGRRNAFPATHE--EIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQ 665
G + + P +E E+ +LSV A+LTP+S+HNQSPRNMYQCQM KQ
Sbjct: 688 VDSQNYKIGDNYKELDNCPVVYEYMELDMCCILSVTASLTPFSNHNQSPRNMYQCQMLKQ 747
Query: 666 TMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDME 725
++G A +R++ K Y L + Q P+V T Y K ++YPTG N +VA++A++G+DME
Sbjct: 748 SVGLPFHAQVYRSEVKTYVLTSLQKPLVYTKEYEKMAFEDYPTGVNCVVAIIAHSGFDME 807
Query: 726 DAMILNKSSVDRGMCHGQIYQTETIDLSDDG----NKVDRGQKLFRRNKDAKSLHSVIDS 781
DAMILNK+SVDRG+ + IY+T+ +DL+ KV + D K + +D+
Sbjct: 808 DAMILNKASVDRGLFNSFIYKTKVVDLNAQSGGKEGKVGHVEYFNNLGSDNKPIVKRLDT 867
Query: 782 DGLPYVGQMIHPGEPYCSIYDKTTNSWRTNS--RKGSESVFVDYVAVDMKNSKNLPQK-- 837
DGLP +G+ + P C I +K N+ + + E+ VD+V + ++ + K
Sbjct: 868 DGLPKIGEKLVKNSPICRIEEKGRNNLINDRVIKYTEETAVVDHVTLVGQSELTVGDKIS 927
Query: 838 --------ANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINP 889
A I+ R R+PI+GDKF+SRHGQKG+ S +WP DMPF G+ PD+I NP
Sbjct: 928 CPGLKYGRALIKLRILRSPIVGDKFASRHGQKGILSAVWPTEDMPFLE-NGIVPDVIFNP 986
Query: 890 HAFPSRMTIAMLLESVAAK 908
H PSRMTI L+E +A K
Sbjct: 987 HGLPSRMTIGKLIEGMAGK 1005
>gi|330038580|ref|XP_003239637.1| DNA-directed RNA polymerase I 135K chain [Cryptomonas paramecium]
gi|327206561|gb|AEA38739.1| DNA-directed RNA polymerase I 135K chain [Cryptomonas paramecium]
Length = 1102
Score = 435 bits (1118), Expect = e-119, Method: Compositional matrix adjust.
Identities = 288/902 (31%), Positives = 471/902 (52%), Gaps = 100/902 (11%)
Query: 37 HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNF----GQFPVMLKTRRCHLQGADSQK 92
C++ K SY G ++ + +ER NF G+ P+M+K+ +C+L A+S++
Sbjct: 83 QCKETKSSYKGDFLSIFHINHR-------KERKNFLIRIGKIPIMVKSLKCNLFNANSRQ 135
Query: 93 LVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCV 152
+V + EE EMGGYFI+NG E++ R +++PK+N+ + R + + + YT + R V
Sbjct: 136 MVEIDEENLEMGGYFIVNGAEKIIRPLLVPKRNFIHVVSRIANLKKHKLYTSLSCSFRSV 195
Query: 153 RKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTND---LEIFNHLTCCY 209
K Q+S T L+YL++G++ + + E+ +P+ I+LK+L+D +D ++IF +
Sbjct: 196 DKIQNSKTFHLHYLISGNIHVRIVFKKHEFFIPIVILLKSLIDISDKKLIDIFGYFD--- 252
Query: 210 DEKYKKEKGAVGSPLVSERVKIILAEVQD-LSLTTRLQCLQHIGEHFQPVIDGLQSESYY 268
+G+ +R+ ++ E +++ R + L +G+ + D +
Sbjct: 253 ----------LGNKYTRQRILTMIREAYSYCNISKRKEVLNFMGKILKTAFD-FDFLTNS 301
Query: 269 AVAETVIRDYIFVHL-NDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHL 327
++E + Y+F+HL ++ KF+LL+ M+QKL +N DS+++QE+LLPGHL
Sbjct: 302 EISEVFLSKYLFIHLGSEYKSKFDLLLLMVQKLLYAYKGNYSENNYDSIESQELLLPGHL 361
Query: 328 ITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLK 387
IYL+E+ E+ I + N KK + + L + KN + IE ++
Sbjct: 362 YLIYLRERFENS-------IYNYFLNKIKKENKYTLKYL-----KNSFNLVTIDIEKLVS 409
Query: 388 TGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWG 447
+G + +L Q +G +V ERLNF RF+S+FR +H+G + + RK+ P SWG
Sbjct: 410 SGNICFNFKEELIQLSGLSVSVERLNFGRFLSYFRNIHKGNFLLQSKKNTSRKIFPHSWG 469
Query: 448 FLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPK 507
++CPVHT DG CG+ N+++ + ++S +I K + ++R +
Sbjct: 470 YICPVHTSDGLLCGISNYLS----FSVIFNSSNSIEK-KKFKKYLIR--------NGFDE 516
Query: 508 LVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGY-VPLSLG 566
+ + P + +LLDG+++G + ++E ++ +R K+S +IP +E+ Y +
Sbjct: 517 IEHTQKPFI-PILLDGKLLGFCENLKLEWIIDKIRCEKISRLGIIPKSMEILYNRRIFTK 575
Query: 567 GAYPGLYLFTSPPKFVRPV--------RNISLPSEESQ-------NIELIGPFEQVFMEI 611
G + + + +RPV +N + +Q +ELIGP EQ + I
Sbjct: 576 GFFSSCSFLSEENRLLRPVLCNNYVHTKNFFFSKKANQFNFQTEKELELIGPNEQFLLNI 635
Query: 612 RCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSV 671
+ + + R F TH EI + +LS+VA LTP+SD NQSPRN YQCQM KQ++G
Sbjct: 636 QFLENENKENRKKFFWTHLEIDSSIILSLVAALTPFSDLNQSPRNTYQCQMFKQSIGVPF 695
Query: 672 QALKFRADQKLYHLQTPQTPIVRTNTYTKYG--IDEYPTGTNAIVAVLAYTGYDMEDAMI 729
R D K Y L PQ P+ R N + G +D +P G NA+VAVL YT +DMEDAM+
Sbjct: 696 YTFWRRNDTKNYFLLIPQIPVCR-NKLIQDGMYLDAFPIGVNAVVAVLCYTSFDMEDAMV 754
Query: 730 LNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQ 789
+N S+DRG ++ T ++ K F K+ + + V G+
Sbjct: 755 INNFSIDRGFFSSKVTTTSNFEM-----------KKFSYKKEFEQIIPVSP-------GK 796
Query: 790 MIHPGEP--YCSIYDKTTNSWRTNSRKGS-ESVFVDYVAVDMKNSKNLPQKANIRFRHTR 846
I GE + I KT + R + S E ++ + + +K K I+ R R
Sbjct: 797 HISRGEVIFFSQIKGKTQKNQRISVYYDSYEKSVIECLKLTLKKEK---INCTIKLRARR 853
Query: 847 NPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVA 906
P GDKF+SRHGQKGV S P IDMPFS + G+ PD+I NPH FPSRMTI +++ES+A
Sbjct: 854 KPNTGDKFASRHGQKGVFSMNCPCIDMPFSEI-GIVPDIIFNPHGFPSRMTIGVIVESLA 912
Query: 907 AK 908
K
Sbjct: 913 GK 914
>gi|159485654|ref|XP_001700859.1| hypothetical protein CHLREDRAFT_113199 [Chlamydomonas reinhardtii]
gi|158281358|gb|EDP07113.1| predicted protein [Chlamydomonas reinhardtii]
Length = 720
Score = 433 bits (1114), Expect = e-118, Method: Compositional matrix adjust.
Identities = 250/537 (46%), Positives = 327/537 (60%), Gaps = 47/537 (8%)
Query: 378 IGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS 437
+G+ E +L TG L +++GLDL Q G+TV AE+LNF R++S FR+VHRGA FA LRTT+
Sbjct: 11 VGSKFEYLLNTGNLVSRSGLDLSQATGFTVVAEKLNFFRYLSHFRSVHRGAYFAELRTTT 70
Query: 438 VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLI 497
VRKLLPESWGF+CPVHTPDG PCGLLNH T+ C + + S + I++VL
Sbjct: 71 VRKLLPESWGFMCPVHTPDGAPCGLLNHFTAACSIVTQGSSNEELTSLG-----IMQVLT 125
Query: 498 GVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLE 557
+GM P+ P L PP L V LDGRVVG + R +AA+++P LE
Sbjct: 126 ALGMSPAAPALSPPPPPDYLCVQLDGRVVGHV-------------RSGAAAAALVPYHLE 172
Query: 558 VGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGG 617
V +VP LGG +PG++LF SQ+ +I P QV GG
Sbjct: 173 VVHVPPLLGGPFPGVFLF-------------------SQSARMIRPVVQVRGRGLRGGGG 213
Query: 618 DGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQ----MAKQTMGFSVQA 673
+ GR+ + E H G+ + + P + PR + MAKQTMG QA
Sbjct: 214 ERGRK--WGCVREWRHGEGLSVLHVHPLPRRRPRRQPRPGLHARRAGAMAKQTMGTPGQA 271
Query: 674 LKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKS 733
+ R D K+Y +QTPQ PI RT Y +Y +DE+P GTNAIVAVLAYTGYDMEDAMILNKS
Sbjct: 272 TQHRTDTKVYRIQTPQAPICRTIRYAEYKMDEFPNGTNAIVAVLAYTGYDMEDAMILNKS 331
Query: 734 SVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSV--IDSDGLPYVGQMI 791
+V+RG+ H +Y+TE ++L ++ + G++ F + I+ DGLP VG +I
Sbjct: 332 AVERGLAHASLYKTECVNLKEE--RGGGGKQYFAATPHTQMTRDGDRIEPDGLPAVGSII 389
Query: 792 HPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIG 851
PG+ + + D + +++ KG E VD V V+ + LPQ+ANIR R RNP+IG
Sbjct: 390 WPGQVFYATRDDQSGKSKSHKLKGEEVAVVDQVGVEGRGLGGLPQQANIRLRFNRNPMIG 449
Query: 852 DKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
DKF+SRHGQKGV S LWPD DMPF TG+RPDLIINPHAFPSRMTI ML+ES+ +K
Sbjct: 450 DKFASRHGQKGVLSILWPDTDMPFCAATGIRPDLIINPHAFPSRMTIGMLVESLVSK 506
>gi|296421898|ref|XP_002840500.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295636718|emb|CAZ84691.1| unnamed protein product [Tuber melanosporum]
Length = 660
Score = 432 bits (1112), Expect = e-118, Method: Compositional matrix adjust.
Identities = 238/573 (41%), Positives = 355/573 (61%), Gaps = 34/573 (5%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR+ I+Y GKL + + D P V + G P+M+++ RCHL+ LV K
Sbjct: 101 CRERHITYRGKLSVKLGLRINDG--PWVSQDREVGNIPIMVRSNRCHLENLAPHDLVERK 158
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
EE+ E+GGYFI+NG+E++ R +I+ ++N+PM+++R SF R + YT+ + IRCVR DQS
Sbjct: 159 EESEELGGYFIVNGIEKLIRLLIVQRRNHPMAIIRPSFTGRGKSYTNMGIQIRCVRPDQS 218
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
S T L+YL +G+V F + EYL+PV +++KALV+TND EIF+ L D
Sbjct: 219 SQTNVLHYLNDGNVTFRFSWRKNEYLVPVIMIMKALVETNDREIFDGLLTTKD------- 271
Query: 218 GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRD 277
+ + +++RV+++L + L T+ + LQH+GE F+ V+ S V ++
Sbjct: 272 --MENTFLTDRVELLLRTFKGYQLLTQKENLQHLGEKFRIVMGVSPDLSDVEVGREFLKK 329
Query: 278 YIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLE 337
VHL D DK+ LL+FM +KL++L + T +DNPD++Q+QE+LL G L + +KE+ E
Sbjct: 330 IALVHLEDPRDKYRLLLFMARKLYALAEGTCQADNPDAIQHQEVLLGGFLYGMIIKERAE 389
Query: 338 DWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGL 397
++L + +Q E++ G DF N + ++ ++ S+ IG S+E + TG L++ +GL
Sbjct: 390 EYLESIVREVQREVQR-GNVLDFNNKEHRTRMFQRT-SENIGKSLEYFISTGNLSSPSGL 447
Query: 398 DLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDG 457
DLQQ +G+T+ AE++NF RFIS FR VHRG+ FA L+TT+VRKLLPESWGFLCPVHTPDG
Sbjct: 448 DLQQVSGFTIVAEKINFYRFISHFRMVHRGSFFAQLKTTTVRKLLPESWGFLCPVHTPDG 507
Query: 458 EPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMI-PSLPKLVKSGPPAV 516
PCGLLNH+ C+V + +IR + L+ +G+ P+ L S A
Sbjct: 508 SPCGLLNHLAHKCQVITAPSDVSSIR----------KTLVSLGVTSPATSPLPHS---AT 554
Query: 517 LSVLLDGRVVGVIPSSEIEKVVAH-LRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLF 575
L V LDG +VG S ++ VVA LR KV + +P DLE+GYVP+S G YPG+YLF
Sbjct: 555 LCVQLDGCIVGWC-SPKLANVVADTLRFWKVEGSHGVPLDLEIGYVPISRCGQYPGIYLF 613
Query: 576 TSPPKFVRPVRNISLPSEESQNIELIGPFEQVF 608
+ + +RPV+ + L E +L+GPFEQ +
Sbjct: 614 SQQARMIRPVKYLPLDKE-----DLVGPFEQPY 641
>gi|399216343|emb|CCF73031.1| unnamed protein product [Babesia microti strain RI]
Length = 1256
Score = 426 bits (1096), Expect = e-116, Method: Compositional matrix adjust.
Identities = 311/963 (32%), Positives = 462/963 (47%), Gaps = 121/963 (12%)
Query: 40 QAKIS---YTGKLMADVEFQYLDAG---SPVVRERFNFGQFPVMLKTRRCHLQGADSQKL 93
QA+IS Y+ + Q G S +V + GQ PVM+K++RC+L G +L
Sbjct: 102 QARISHTTYSAPIYVTFALQSTSGGVECSQIVHKELLAGQIPVMVKSKRCNLCGLTGDEL 161
Query: 94 VSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVR 153
V+ E+A E GGYFI+ G ER+ R +I + NYP+ + R FR + T+ A+++R R
Sbjct: 162 VARGEDAQEPGGYFIVRGNERLIRHMISSRSNYPIGVKRKQFRAKDAFNTEYAIIMRSQR 221
Query: 154 KDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKAL---VDTNDL-----EIFNHL 205
+D + V L Y + L + +P G +LKA + T DL E F H
Sbjct: 222 RDGTVVGNVLCYTEDERCVLRVAINKVIKTIPFGTLLKAAKPHMSTWDLKKRLLEDFLHN 281
Query: 206 TCCYDEKYKKEKGAVG-SPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQS 264
Y + + PLV++ + E + L + C + +P
Sbjct: 282 EEMTVHFYNIFQNMIFLEPLVAD---VDFVENRYLHQLGK-ACWHRVHTFMRP------G 331
Query: 265 ESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLP 324
S V+++YI V +DKF L+ M +KL L + D DSL QE+ LP
Sbjct: 332 SSLAECGLFVMKNYICVQSESLDDKFECLLHMFKKLILLARGYIIPDQIDSLAFQELTLP 391
Query: 325 GHLITIYLKEKLEDWLRKGKKLIQDEIENNGK--------------KFDFFNLANIKKVM 370
G + LKE L L K K L E+ N K +F + ++ +
Sbjct: 392 GQIYASVLKESLYSALTKLKSLYSIEVANFKKYLATVEGVDDMEKVMLEFCSNISLFNYL 451
Query: 371 EKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASF 430
+ + ++ + + L TG + + + QQ G+T+ A+R+N+ RF+S FR+VHRG +F
Sbjct: 452 TEKVAPEVPSKVNYFLSTGNI-NSSYFEFQQNLGWTIIADRMNYFRFMSHFRSVHRGNAF 510
Query: 431 AGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTS-TCRVASYYDS--RGNIRDFSK 487
+ +TS+RKLL ESWGFLCPVHTPDG PCGLL H++ + S DS G +R F K
Sbjct: 511 TQMLSTSMRKLLGESWGFLCPVHTPDGTPCGLLTHLSKHAWPLTSAPDSGTMGAVRKFLK 570
Query: 488 MRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVS 547
L + G+ + K P V++DG + IPS + +++ L K+
Sbjct: 571 DLGYPLDLRAPGGITLDYRYVHKPVP-----VVVDGIPIARIPSDDAPQLMDALISAKLE 625
Query: 548 AASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQ- 606
I D E+ + G +Y+ T P + VR V+N+ +ELIGP Q
Sbjct: 626 GIKGIRKDFEI-FSTCEAKGQMEYIYVLTFPGRMVRMVKNLKF-----DRVELIGPIAQQ 679
Query: 607 -VFMEIRCPDGGDGGRR-------NAFPATHEEIHPTGML--SVVANLTPY--------- 647
F+ I + R ++ P ++ + +P L ++ +NL PY
Sbjct: 680 WSFIAINTAELDQHRARIKLEYNLSSNPQSNPQSNPPSNLPSNLPSNLPPYPSFESYKRI 739
Query: 648 -------------------------------SDHNQSPRNMYQCQMAKQTMGFSVQALKF 676
SD NQSPRNMYQCQM KQ+MG +
Sbjct: 740 DKLLENIPVHYTHIEIEPHGILSICANCTPFSDFNQSPRNMYQCQMLKQSMGIPAHSQPL 799
Query: 677 RADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVD 736
R+D KLY+L TPQ+P+V T+ Y + ++ Y TG NA+VA++AYTG+DMEDAM++NKSS++
Sbjct: 800 RSDGKLYNLITPQSPLVSTSDYRRLHLNNYATGANAVVAIMAYTGFDMEDAMVINKSSIE 859
Query: 737 RGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEP 796
RG + +T+ +D + G G R L D+DGL VGQ+I G P
Sbjct: 860 RGFLRATLCRTKVLDAAPPGCSAKEGHCYVFRGPSNGPL----DADGLVRVGQLIANGSP 915
Query: 797 YCSIYDKTTNSW---RTNSRKGSESVFVDYVAVDMKNSKNLPQ--------KANIRFRHT 845
I T + R + E V V + N + + +A IR +
Sbjct: 916 LARIEYAGTGAGARPRVEMYREEEPARVSSVTLVTPNPSRIDKCVESAPCSRAIIRLQSV 975
Query: 846 RNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESV 905
R P +GDKF+SRHGQKG+ S W DMPF+ +G+ PD++ NPH FPSRMTI ML+E++
Sbjct: 976 RVPDVGDKFASRHGQKGILSMTWRHEDMPFTE-SGIVPDILFNPHGFPSRMTIGMLIEAL 1034
Query: 906 AAK 908
A K
Sbjct: 1035 AGK 1037
>gi|313235073|emb|CBY10732.1| unnamed protein product [Oikopleura dioica]
Length = 887
Score = 419 bits (1077), Expect = e-114, Method: Compositional matrix adjust.
Identities = 246/794 (30%), Positives = 418/794 (52%), Gaps = 70/794 (8%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CRQ K YT + L +G V + + Q P+M+ + +CHL+G ++LV+ K
Sbjct: 109 CRQKKTDYTAPVHVTFNLINLSSGETQVVTKKDLLQMPLMVMSSKCHLRGLSPEELVARK 168
Query: 98 EEAAEMGGYFILNGLERVFRSVIL--PKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKD 155
E+ E+GGYFI +G E+V R + + ++N+P+ + R+ ++ RREGYTD ++IRC+
Sbjct: 169 EDHFEIGGYFIASGNEKVIRLLNMNRTRRNFPLGLRRNGWKRRREGYTDAGLMIRCMDNW 228
Query: 156 QSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKK 215
+ + + ++ + + F++Q + + LP+ V++AL DLEI+ ++
Sbjct: 229 ERTSNMNVHVTKTNEMEVVFYIQKQLFHLPMMTVVRALTSWTDLEIYREFMQTMSDEPNY 288
Query: 216 EKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVI 275
+ V +K ++ + ++ + +G+ F+ +S + +
Sbjct: 289 DSA------VKRMLKKLVNADNMVKRNDAVKLSKFLGQSFRIFDICPAWKSDVEAGQAFL 342
Query: 276 RDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEK 335
+ Y ++LN++ DK M +K F + +T +D+ DS ++ ++LLPGHL E
Sbjct: 343 KRYCLIYLNNDEDKVRAFALMARKAFRISHNTCATDDIDSPESHDVLLPGHLFQSMTLEF 402
Query: 336 LEDWLRKGKKLI-----------QDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIET 384
E + R ++ DE+ N F + N+ + +
Sbjct: 403 FESYQRSVSMIMAKEYSKQLEKGNDEVGQNMLSFAINKIGNMNQ------------HFKY 450
Query: 385 MLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPE 444
++ TG L T GL +QQ AG V AE++NF RF S FR +HRGA F +R TS RKL
Sbjct: 451 LIATGNLKTNDGLGMQQLAGIVVGAEKINFARFYSHFRCIHRGAFFMEMRATSPRKLSTA 510
Query: 445 SWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPS 504
+WGF+CPVHTPDG PCGLLNH+ T R+ ++ + + +L+ +G+ P
Sbjct: 511 AWGFICPVHTPDGPPCGLLNHLAHTVRINVKRENTAKLEE----------LLLEIGVKPC 560
Query: 505 LPKLVKSGPPAVLSVLLDGRVVGVIPSS-EIEKVVAHLRRLKVSAASVIPDDLEVGYVPL 563
K + P V++DG+ +G I + + V +LRRLK S++ +PD LE+ + P
Sbjct: 561 SIKANEFDIP----VIIDGKQIGWIANGWRAQAVEKYLRRLKTSSSDRVPDTLEIVHCPA 616
Query: 564 --SLGGA--YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDG 619
+ G A +PG+ L T P + RP+ N+ IE+IG EQV++ +
Sbjct: 617 PENKGEAVMFPGINLLTEPARMYRPLLNL-----REVKIEMIGIMEQVWLHVTV-----N 666
Query: 620 GRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRAD 679
+ + ++E++P +LS +A ++P+S+ N R + QCQMAKQT G+ L +R+D
Sbjct: 667 QKESHELTEYQELYPAALLSELACMSPFSNMNAGARVILQCQMAKQTFGWPSYTLNYRSD 726
Query: 680 QKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGM 739
K+Y + TPQ P+VR++ + +G+D+YP GTN ++AV++YTGYD+EDA ++K S +RGM
Sbjct: 727 NKMYRILTPQEPLVRSHLHDSWGMDDYPLGTNVMIAVISYTGYDLEDATCVSKMSRERGM 786
Query: 740 CHGQIYQTETIDLSDDGNKVD--RGQKLFRRNK-DAKSLHSV-------IDSDGLPYVGQ 789
+G IY+T+ +DL D + G +L R++ D L + +D DGLP+ G
Sbjct: 787 MYGTIYKTKMVDLQDTAQSMGYRSGLRLGCRDRFDPNELKAYRKIAGDKLDIDGLPFPGG 846
Query: 790 MIHPGEPYCSIYDK 803
+ + Y Y++
Sbjct: 847 IFTYQDAYYCYYNE 860
>gi|71028652|ref|XP_763969.1| DNA-directed RNA polymerase subunit beta [Theileria parva strain
Muguga]
gi|68350923|gb|EAN31686.1| DNA-directed RNA polymerase, beta subunit, putative [Theileria parva]
Length = 1235
Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust.
Identities = 297/971 (30%), Positives = 468/971 (48%), Gaps = 138/971 (14%)
Query: 39 RQAKISYT---GKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVS 95
R AKIS+T L+ ++ ++ S + +E G P+M+++ RC+L+G ++++
Sbjct: 88 RHAKISHTTYEAPLVVTFGIKFFESESIITKE-VPVGHIPIMVRSNRCNLKGLSGEEMIK 146
Query: 96 LKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKD 155
E+A E GGYFI+ G E++ R +I+P+ NYP++ S + +T+ ++ +RC + D
Sbjct: 147 QGEDADEPGGYFIIKGNEKMLRQLIVPRSNYPIAFKSDSNSQKNVLFTEYSIFMRC-QSD 205
Query: 156 QSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKK 215
+ Y L + R F + + ++ LV L DE +K
Sbjct: 206 LDGTCVSNYLHLTINKRCMFRVIVRNSIV--------LVPLFLLLRALLPFLSEDEFKRK 257
Query: 216 --EKGAVGSPLVSERVKIILAEVQ------DLSLTT-----RL--QCLQHIGEHFQPVID 260
E + + +I L VQ D+ RL C + ++ P
Sbjct: 258 LLENCSNNQEMTVLYHRIFLDMVQCDPVLSDIDFIQNRYLYRLGKACWNQVSQYLHP--- 314
Query: 261 GLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQE 320
++ A +I+ ++ +H N DKF L+FM KL +L + S++ DS QE
Sbjct: 315 ---GSTFEECAHHLIKYFVIIHAKSNLDKFRTLLFMFNKLVNLSNGNIQSESYDSFAFQE 371
Query: 321 ILLPGHLITIYLKEKLEDWLRKGKKLIQDEIEN-----NGKK------------------ 357
+LLPG + LKE L L + + + EI N GK+
Sbjct: 372 LLLPGQSYSCILKESLYLSLTRIRTVYNLEINNFLNHLKGKRGFKRNYAGVGKLENLDQD 431
Query: 358 ------FDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAER 411
F N N+ + +I + L TG A T +L Q G+ + +R
Sbjct: 432 LEEEMVRKFMNSVNLFNFAINKVAPEITKKVHHFLSTGN-AFNTHYELNQNTGFALVLDR 490
Query: 412 LNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMT---- 467
+N+ RF S R+VHRG F +R+T VRKLL E+WGF+CPVHTPDG PCGLL H++
Sbjct: 491 INYHRFSSHLRSVHRGNIFMKMRSTQVRKLLGETWGFICPVHTPDGAPCGLLLHLSQYAK 550
Query: 468 --STCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRV 525
+T SY +S I+ F +++ L + + +G + +++DG
Sbjct: 551 PVTTPNKPSYLNS---IKSF--LKSQPLHISGSTNKV--------NGGNDRIPLVVDGIP 597
Query: 526 VGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPV 585
+ + ++E+ L+ K + E + G + +Y+ T P + VRPV
Sbjct: 598 ISYVNLEDVEEFYDKLKTSKNLEKFGMCRHFETCAIRDKFG-VFSSIYIMTFPGRLVRPV 656
Query: 586 RNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAF-------------------- 625
RNI + IELIGP Q++ I + N
Sbjct: 657 RNI-----KDNQIELIGPITQLWSTIAINEYELNKSHNKLLDLQANPSAMNKVQVPKPLK 711
Query: 626 ----------PATHE--EIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQA 673
P +E E+ +LS+ A+LTP+S+HNQSPRNMYQCQM KQ++G +
Sbjct: 712 SLKDNELDNCPVLYEYVELDMCCILSLSASLTPFSNHNQSPRNMYQCQMLKQSVGIPFHS 771
Query: 674 LKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKS 733
+R++ K Y L + Q P+V T Y K G +YPTG N +VA++A++G+DMEDAMILNK+
Sbjct: 772 QFYRSEVKTYVLTSLQRPLVATKEYEKMGFQDYPTGVNCVVAIIAHSGFDMEDAMILNKA 831
Query: 734 SVDRGMCHGQIYQTETIDLSDDGNKV-DRG---QKLFRRNKDAKSLHSVIDSDGLPYVGQ 789
SVDRG+ + IY+++ IDL+ + +RG + +KD+K + +D DGLP +G+
Sbjct: 832 SVDRGLFNSFIYKSKVIDLNSQASSTKERGGTVEYFNNMDKDSKLIVKKLDFDGLPRLGE 891
Query: 790 MIHPGEPYCSIYDKTTNSWRTNS--RKGSESVFVDYVAVDMKNSKNLPQK---------- 837
+ P+ I ++ N+ + + E VD + + K+ + K
Sbjct: 892 KLTKNSPFYRIEERGKNNIVNDKVVKYTEEPAIVDQITLVGKSEITVGDKISCPGLKHDR 951
Query: 838 ANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMT 897
A I+ R R+PI+GDKF+SRHGQKG+ S +WP DMPF G+ PD+I NPH PSRMT
Sbjct: 952 AIIKLRVLRSPIVGDKFASRHGQKGILSAVWPTEDMPFLE-NGIVPDVIFNPHGLPSRMT 1010
Query: 898 IAMLLESVAAK 908
I L+E +A K
Sbjct: 1011 IGKLIEGMAGK 1021
>gi|330946834|ref|XP_003306807.1| hypothetical protein PTT_20050 [Pyrenophora teres f. teres 0-1]
gi|311315506|gb|EFQ85086.1| hypothetical protein PTT_20050 [Pyrenophora teres f. teres 0-1]
Length = 722
Score = 416 bits (1068), Expect = e-113, Method: Compositional matrix adjust.
Identities = 244/641 (38%), Positives = 362/641 (56%), Gaps = 64/641 (9%)
Query: 37 HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
R+ +Y GK+ A ++++ ++ G E + G P+ML++ RCHLQ +V
Sbjct: 122 EARERHATYRGKMRAQLQWR-INKGD-WQEEMADLGSVPIMLRSNRCHLQDLSPAAMVKS 179
Query: 97 KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQ 156
KEE+ E GGYFI+NG E++ R + + ++NYPM++ R +F +R GYT + IR +R DQ
Sbjct: 180 KEESEEFGGYFIINGNEKMIRPLQVNRRNYPMAIKRGAFTNRGPGYTQFGIQIRSMRPDQ 239
Query: 157 SSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKE 216
+S T L+YL +G+V F + EYL+P+ +V+KALV+TND EIF L
Sbjct: 240 TSQTNALHYLDDGNVNFRFSWRKSEYLVPLVMVMKALVETNDREIFEGLVGA-----AGS 294
Query: 217 KGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIR 276
KG + VS+RV+++L + L T+ + +G+ F+ V+ S + +R
Sbjct: 295 KGLLEKQFVSDRVELLLRTFKVYGLHTKAKTRAFLGQKFKVVLQLPPDISDFDGGTEFLR 354
Query: 277 DYIFVHLN-------DNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
+ HL + DKF +L+FM +KL+SLV+ DNPD++Q+QEILL G L
Sbjct: 355 KIVLPHLGCVAVTPAQDADKFRMLLFMTRKLYSLVEGECAVDNPDAVQSQEILLGGQLYG 414
Query: 330 IYLKEKLEDWLRKGKKLIQDEIENNGKKFDF-------FNLANIKKVMEKNPSKQIGTSI 382
+ LKE+LE+WL Q + G+K ++ F K++ + IG ++
Sbjct: 415 MILKERLEEWLNS----FQLALREWGRKTEYKPIVSDDFRRDWTSKILRRT-KNNIGDAM 469
Query: 383 ETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLL 442
L TG L + +GLD+QQ +GYTV AER+NF RFIS FR VHRGA FA L+TT+VRKLL
Sbjct: 470 SYFLSTGNLVSPSGLDMQQTSGYTVVAERINFFRFISHFRMVHRGAFFAQLKTTTVRKLL 529
Query: 443 PESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMI 502
PESWGF +G PCGLLNH C++A+ N+ D S + + ++ +
Sbjct: 530 PESWGF-------NGSPCGLLNHFAHKCKIAT-----SNV-DVSAIPKLVAKLGVSSDSS 576
Query: 503 PSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVP 562
SL + V V LDGRV+G + + + LR KV + +P +LE+GYVP
Sbjct: 577 ASLDESV--------VVQLDGRVLGFCSPKQAKIISDTLRYWKVEGSHGVPLELEIGYVP 628
Query: 563 LSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDG----GD 618
S G YPG+Y+F+ + RPV+ + L ++ +GPFEQ +M I C D GD
Sbjct: 629 NSNNGQYPGVYMFSQSARMYRPVKYLPL-----NKLDYVGPFEQPYMSISCTDAEIVSGD 683
Query: 619 GGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQ 659
+TH E+ PT +LS+V+N TP+SD+NQSPRN+YQ
Sbjct: 684 --------STHVELDPTNILSIVSNQTPFSDYNQSPRNLYQ 716
>gi|164657973|ref|XP_001730112.1| hypothetical protein MGL_2494 [Malassezia globosa CBS 7966]
gi|159104007|gb|EDP42898.1| hypothetical protein MGL_2494 [Malassezia globosa CBS 7966]
Length = 691
Score = 411 bits (1056), Expect = e-111, Method: Compositional matrix adjust.
Identities = 224/552 (40%), Positives = 332/552 (60%), Gaps = 26/552 (4%)
Query: 36 DHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVS 95
D CR +SY G+L A V + +D G P E + GQ P+M+ + RCHL+G S +LV+
Sbjct: 152 DECRNRLVSYRGRLTARVTWS-VDYG-PEQSEIRDMGQVPIMVGSNRCHLRGLTSSELVA 209
Query: 96 LKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCV-RK 154
EE EMGGYFI+NG ER+ R +IL K N+ M++ R SF R YT KA IRCV R
Sbjct: 210 KHEEPNEMGGYFIINGNERLMRFLILAKANHVMALERPSFTRRGPSYTSKACSIRCVGRH 269
Query: 155 DQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYK 214
D S+T ++YL NG V L F + +EY++PV +VLKALV D EIF +
Sbjct: 270 DLMSITNSVHYLDNGGVTLRFSWRKQEYMVPVVMVLKALVSATDKEIFASIV-------- 321
Query: 215 KEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETV 274
+ + +++RV+++L + +L T QCL+++G+ F+ V+ + S+ V E +
Sbjct: 322 --QADTSNTFLTDRVELLLRSFKQYALWTGEQCLEYLGDKFRVVMRAPEDWSHAQVGEEL 379
Query: 275 IRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKE 334
I + HL+ DK+ LL+FM++KL++ V +DNPDS Q+QE+L+PG L +KE
Sbjct: 380 INRLVLTHLDMPRDKYRLLVFMIRKLYAFVAGECCADNPDSPQHQEVLMPGFLYGAIIKE 439
Query: 335 KLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQ 394
+L+++L + +I ++ + K+ DFF+ +++V+ K + IGT + + L TG L++
Sbjct: 440 RLDEYLINVRSVIARDVRMHAKECDFFDARYVQRVLAKV-NGDIGTRLSSFLATGNLSSP 498
Query: 395 TGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHT 454
+GLDLQQ G+T+ AE+LNF R++S FR+VHRGA FA L+TT+VRKLLPE+WGFLCPVHT
Sbjct: 499 SGLDLQQVGGFTIVAEKLNFYRYVSHFRSVHRGAFFAELKTTTVRKLLPEAWGFLCPVHT 558
Query: 455 PDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPP 514
PDG PCGLLNH + TC++ + RD L L +GM + + +
Sbjct: 559 PDGSPCGLLNHFSHTCQLTT--------RDLDVAHIPAL--LTSLGMTEGVATQISA--Q 606
Query: 515 AVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYL 574
+ V LDG ++G + + LR K +P DLE+G+VP S GG Y +YL
Sbjct: 607 THVCVQLDGVMLGYATPALARHMATVLRVWKTEGLHAVPLDLEIGFVPTSHGGQYRVVYL 666
Query: 575 FTSPPKFVRPVR 586
F+ + +RPVR
Sbjct: 667 FSGRARMMRPVR 678
>gi|78190671|gb|ABB29657.1| RNA polymerase I second largest subunit [Suberites fuscus]
Length = 536
Score = 387 bits (995), Expect = e-104, Method: Compositional matrix adjust.
Identities = 211/461 (45%), Positives = 284/461 (61%), Gaps = 34/461 (7%)
Query: 456 DGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIP---SLPKLVKSG 512
DG PCGLLNH+ + C+V + + + R+L+ +GM P LP
Sbjct: 1 DGAPCGLLNHLAADCQVTTSVPNT----------IHLPRLLVSLGMTPLGSPLPTSHTHK 50
Query: 513 PPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGL 572
L V+LDGR++G + + + + + LR LK +P LE+G VP G +PGL
Sbjct: 51 DHHPLPVVLDGRILGEVEALQAKDLAVKLRTLKCWGKEKVPPTLEIGLVPPLTDGQFPGL 110
Query: 573 YLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRNAFPATHEE 631
+LF++ + +RPVRN++ S E LIG FEQV+M+I P+ G TH E
Sbjct: 111 FLFSTSARMMRPVRNLATNSRE-----LIGSFEQVYMDIAVIPEEAHQGH-----TTHLE 160
Query: 632 IHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTP 691
+ M S +A LTPYSD NQSPRNMYQCQMAKQTMG +Q+ +R D KLY LQ+PQ P
Sbjct: 161 LDEGIMFSAIATLTPYSDFNQSPRNMYQCQMAKQTMGTPLQSFPYRMDSKLYRLQSPQAP 220
Query: 692 IVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETID 751
+VRT+TY Y +DEYP GTNAIVAV++YTGYDMEDAMILNK+SV+RG H +Y++E I
Sbjct: 221 MVRTSTYNHYSMDEYPLGTNAIVAVISYTGYDMEDAMILNKASVERGFKHANVYKSEVIS 280
Query: 752 LSDDGNKVDRGQKLF---RRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSW 808
+S ++ R K+F +K+A+ L D DG P +G ++ G+PY S D T
Sbjct: 281 ISSPSDR-GRPSKMFGILPGDKEAEKL----DQDGFPPIGTLLQEGDPYYSCIDLDTGRS 335
Query: 809 RTNSRKGSESVFVDYVAVDMKNSKNLP-QKANIRFRHTRNPIIGDKFSSRHGQKGVCSQL 867
+ K SE FVD + + + + P Q+A I+ R RNPIIGDKF+SR GQKG+CSQ
Sbjct: 336 KVARYKSSEPAFVDQIKLLGNETGDSPLQRAFIKLRICRNPIIGDKFASRAGQKGICSQK 395
Query: 868 WPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
WP +MPF+ +GM PD+I NPH FPSRMTI M++E +A K
Sbjct: 396 WPSENMPFT-ESGMVPDIIFNPHGFPSRMTIGMMVEMMAGK 435
>gi|449515913|ref|XP_004164992.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2-like [Cucumis
sativus]
Length = 719
Score = 377 bits (969), Expect = e-101, Method: Compositional matrix adjust.
Identities = 178/222 (80%), Positives = 194/222 (87%), Gaps = 1/222 (0%)
Query: 687 TPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQ 746
TPQTPIVRT+TYTKY IDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSV+RGM HGQIYQ
Sbjct: 277 TPQTPIVRTSTYTKYNIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVERGMFHGQIYQ 336
Query: 747 TETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTN 806
TETIDLSD GN+ R QK+FRR+ S+ S+ID+DGLPYVGQMI P EPYCSIYD+
Sbjct: 337 TETIDLSDQGNRSSRSQKMFRRSNIDTSVRSIIDADGLPYVGQMIQPDEPYCSIYDEVAG 396
Query: 807 SWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQ 866
+ RT KGSE+V VDYV+VD+KN KN PQK NIRFR RNP+IGDKFSSRHGQKGVCSQ
Sbjct: 397 TTRTMKLKGSEAVIVDYVSVDVKN-KNNPQKVNIRFRRPRNPMIGDKFSSRHGQKGVCSQ 455
Query: 867 LWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
LWPD+DMPF G TGMRPDLIINPHAFPSRMTIAML+ESVAAK
Sbjct: 456 LWPDVDMPFCGATGMRPDLIINPHAFPSRMTIAMLMESVAAK 497
>gi|253746328|gb|EET01680.1| DNA-directed RNA polymerase subunit B [Giardia intestinalis ATCC
50581]
Length = 1235
Score = 371 bits (953), Expect = e-99, Method: Compositional matrix adjust.
Identities = 265/869 (30%), Positives = 415/869 (47%), Gaps = 87/869 (10%)
Query: 14 ELVRHHIESFDYMLDEGLSEMFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRERF---- 69
E V H+ SF+ +D + + H I+ VE L +P F
Sbjct: 52 EAVSSHVNSFNDFIDSLNTTILKHAPSITINLNTSKAIKVELANLSLNAPPFTPAFARET 111
Query: 70 -------------------------NFGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMG 104
N G P+M+ ++ C L G ++ + L+E+ + G
Sbjct: 112 HANYCGTLNVTIKVSDGPMSKTAVINAGDVPIMVGSKLCLLYGKTREERIRLREDERDAG 171
Query: 105 GYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLY 164
GYFI NG ++V R + N P++ + + + + VR+D + +
Sbjct: 172 GYFISNGQDKVMRLHLDCLSNTPLAFTKYRSLSSMSEFAPAGIHYKGVREDGHVYSTVIQ 231
Query: 165 YLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPL 224
+ + + F + G+ +P+ +VL+ALV T D EI+ + KE G
Sbjct: 232 ARKDSFLNVKFTVDGRHIYVPLMLVLRALVSTTDKEIYYTICSICASTDAKENG-----Y 286
Query: 225 VSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIF---- 280
VS R++ +L + + + C Q +G F+ ++ L Y + + D +F
Sbjct: 287 VSLRIEAMLRDFHKYRIFSHKACKQLLGGKFRMILSLLDR---YDLTDMDCCDLLFERNL 343
Query: 281 ---VHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLE 337
+ D KFN++ M +K L SDNPD L +QE + PG + K ++
Sbjct: 344 LINIPKEDTRAKFNMMCLMARKCLLLFGGFIKSDNPDLLSSQEAITPG----AFFKAEIA 399
Query: 338 DWLRKGKKLIQDEIENNGK--KFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQT 395
L K +LI + G ++ N + + + + + ++ G +
Sbjct: 400 STLIKTMRLISRNATSTGAIGSYELSNSWISHYIASPKLWRSLTSGLRSLTGPGVMRAYR 459
Query: 396 GLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTP 455
G D +G +V A+R+N++RF++ FR ++RG +FAG + TS+RKL PES+GF C VHTP
Sbjct: 460 GHDYSNMSGLSVLADRINYVRFLAHFRCINRGNAFAGHKITSIRKLYPESYGFQCAVHTP 519
Query: 456 DGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPA 515
DG PCG+L H+ C A+ S + ++ +L G+ PSL ++
Sbjct: 520 DGAPCGILTHL---CYKAAVLSSTPT----ADQTANLFMLLSQFGLSPSLSEVY------ 566
Query: 516 VLSVLLDGRVVGVIPSSE-IEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYL 574
L+V+L+G V+G I ++E K+VA +R K+ AA + P V + +PG+Y+
Sbjct: 567 TLAVVLNGTVLGFIDTNEHAAKLVACIRAAKIQAA-IFPSTEVVFIERDNKDRLFPGVYM 625
Query: 575 FTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIHP 634
TS +F RPV ++ S + E I P EQ+F++I GD R TH+EI P
Sbjct: 626 NTSMGRFYRPVHSLI-----SNSQEYITPLEQIFLQIAI--YGDDVRPGV--TTHQEITP 676
Query: 635 TGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVR 694
T +LS++ L P+SDHNQSPRNMY+CQM KQTM + L +R D K Y L TPQ PIVR
Sbjct: 677 TSLLSILGLLVPFSDHNQSPRNMYECQMLKQTMAIPCRNLSYRYDTKSYLLTTPQRPIVR 736
Query: 695 TN-TYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLS 753
+ G D +PTGTN +VAV AYT YDMEDA ++NK+S++RG+ HG +Y ID
Sbjct: 737 NAIIHDLGGFDTHPTGTNLVVAVSAYTSYDMEDAALINKASLERGLFHGTVYSVHDIDCR 796
Query: 754 DDG--NKVDRGQKLF---RRNKDAKSLH------SVIDSDGLPYVGQMIHPGEPYCSIYD 802
+D + V ++F RR+ D H + +D DGLP VG + G + YD
Sbjct: 797 NDKMMSFVLTVAEVFPHLRRSPDYIITHMDENYDTELDEDGLPPVGSYLSHGSVFYQTYD 856
Query: 803 KTTNSWRTNSRKGSESVFVDYVAVDMKNS 831
+ T+ E FV+ V V K +
Sbjct: 857 PPKQRYTTHLYH-HEPGFVEKVIVIHKTT 884
Score = 98.6 bits (244), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/80 (56%), Positives = 57/80 (71%), Gaps = 1/80 (1%)
Query: 829 KNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIIN 888
K S Q+ I RH R P++GDK +SRHGQKG+ W DMPF+ +G+ PDLIIN
Sbjct: 966 KASLCFIQRVRIVIRHDRTPVVGDKVASRHGQKGIMGIRWRQTDMPFTS-SGIVPDLIIN 1024
Query: 889 PHAFPSRMTIAMLLESVAAK 908
PHAFPSRMT+ ML+ES+A+K
Sbjct: 1025 PHAFPSRMTVGMLIESLASK 1044
>gi|159117422|ref|XP_001708931.1| DNA-directed RNA polymerase subunit B [Giardia lamblia ATCC 50803]
gi|157437045|gb|EDO81257.1| DNA-directed RNA polymerase subunit B [Giardia lamblia ATCC 50803]
Length = 1235
Score = 370 bits (949), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 253/813 (31%), Positives = 404/813 (49%), Gaps = 57/813 (7%)
Query: 39 RQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKE 98
R+ + +Y G L ++ VV N G PVM+ ++ C L G ++ + L+E
Sbjct: 109 RETRANYCGPLHVTLKVSDGPMSKTVV---INAGDVPVMVGSKLCLLHGKTREERIRLRE 165
Query: 99 EAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSS 158
+ + GGYFI NG ++V R + N P++ + + V + VR+D
Sbjct: 166 DERDAGGYFISNGQDKVVRLYLDCLSNTPLAFTKYRSLSTISEFAPAGVHYKGVREDGHV 225
Query: 159 VTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKG 218
+ + + + + F + G+ +P+ +VL+ALV T D EI++ + + KE G
Sbjct: 226 YSTVIQARKDNFLSVKFTIDGRYIYVPLILVLRALVSTTDKEIYSTICTICASAHPKEDG 285
Query: 219 AVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAV--AETVIR 276
VS RV+ +L + + + C Q +G F+ ++ L V + +
Sbjct: 286 -----YVSLRVEAMLRDFHKYRIFSHKACKQLLGGKFRMILSLLDRYDLTDVDCCDLLFE 340
Query: 277 DYIFVHL--NDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKE 334
Y+ +++ D KFN++ M +K L D+PD L +QE L PG + K
Sbjct: 341 QYLLINIPKEDTRAKFNMMCLMARKCLLLFGSFIKPDSPDLLSSQEALTPG----AFFKA 396
Query: 335 KLEDWLRKGKKLIQDEIENNGK--KFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLA 392
++ L K +L+ + G ++ N + + + + + ++ G +
Sbjct: 397 EVTSTLIKIMRLVSRNATSTGAIGSYELSNSWISHYIASPKLWRPLSSGLRSLAGPGVMR 456
Query: 393 TQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPV 452
G D +G +V A+R+N++RF++ FR ++RG +FA + TS+RKL PES+GF C V
Sbjct: 457 AYKGHDYSNMSGLSVLADRINYVRFLAHFRCINRGNAFATHKITSIRKLYPESYGFQCAV 516
Query: 453 HTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSG 512
HTPDG PCG+L H+ V S + I ++ +L G+ PSL +
Sbjct: 517 HTPDGAPCGILTHLCYKATVLSSTPTTDQI-------ANLFILLAQFGLSPSLSDIYS-- 567
Query: 513 PPAVLSVLLDGRVVGVIPSSEIE-KVVAHLRRLKVSAASVIPDDLEVGYVPL-SLGGAYP 570
L V+L+G ++G + ++E ++VA +R KV S+I EV ++ + +P
Sbjct: 568 ----LCVVLNGTILGYLDTNERAIQLVACIRAAKVK--SIIFPYTEVVFIEKGNKDHLFP 621
Query: 571 GLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHE 630
G+Y+ TS +F RPV +++ + + E I P EQ+F++I GD R TH+
Sbjct: 622 GIYMNTSMGRFYRPVHSLT-----NNSPEYITPLEQIFLQIAI--YGDDVRLGV--TTHQ 672
Query: 631 EIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQT 690
EI PT +LS++ L P+SDHNQSPRNMY+CQM KQTMG + L ++ D K Y L TPQ
Sbjct: 673 EITPTSLLSILGLLVPFSDHNQSPRNMYECQMLKQTMGIPCRNLAYKYDTKSYLLTTPQK 732
Query: 691 PIVRTNTYTKY-GIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTET 749
P+VR G D +PTGTN +VAV AYT YDMEDA ++NK+S++RG+ HG +Y
Sbjct: 733 PLVRNAIIHDIGGFDTHPTGTNLVVAVSAYTSYDMEDAALINKASLERGLFHGTVYSVHD 792
Query: 750 IDLSDDG-----NKVDRGQKLFRRNKDAKSLH------SVIDSDGLPYVGQMIHPGEPYC 798
ID DD V +R+ D H + +D DGLP VG + G +
Sbjct: 793 IDCYDDKLMRYMRTVATAVPYLKRSPDYIVTHMDENYDTELDEDGLPPVGAYLSHGSVFY 852
Query: 799 SIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNS 831
YD T + T E FV+ V V K++
Sbjct: 853 QTYDPTKQCYSTKLYH-HEPGFVEKVIVIHKSA 884
Score = 99.0 bits (245), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/119 (44%), Positives = 72/119 (60%), Gaps = 3/119 (2%)
Query: 792 HPGEPYCSIYDKTTNSWRTNSRKGS--ESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPI 849
PG S D T + R+++ K S + A +S + Q+ I RH R P+
Sbjct: 927 QPGSGSESNEDNQTATPRSHASKAERKSSRQLQTRARTESSSLHFIQRVRIVIRHDRTPV 986
Query: 850 IGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
+GDK +SRHGQKG+ W DMPF+ +G+ PDLIINPHAFPSRMT+ ML+ES+A+K
Sbjct: 987 VGDKVASRHGQKGIMGIRWRQTDMPFTS-SGIVPDLIINPHAFPSRMTVGMLIESLASK 1044
>gi|84996561|ref|XP_953002.1| DNA-directed RNA polymerase I, second largest subunit [Theileria
annulata strain Ankara]
gi|65303998|emb|CAI76377.1| DNA-directed RNA polymerase I, second largest subunit, putative
[Theileria annulata]
Length = 1218
Score = 370 bits (949), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 246/745 (33%), Positives = 365/745 (48%), Gaps = 110/745 (14%)
Query: 247 CLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDH 306
C + ++ P ++ A+ +I+ ++ +H N DKF L+FM KL +L +
Sbjct: 313 CWNQVSQYLHP------GSTFEECAQHLIKYFVIIHAKSNLDKFRTLLFMFNKLVNLSNG 366
Query: 307 TSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIEN-----NGKK---- 357
S++ DS QEI+L G + LKE L L + + + EI N GK+
Sbjct: 367 NIQSESYDSFAFQEIMLAGQSYSCILKESLYLCLTRIRTVYNLEINNFLSHLKGKRGFKR 426
Query: 358 --------------------FDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGL 397
F N N+ + ++ I L TG A T
Sbjct: 427 NFTGVGKPEILDQDLEEEMIRKFMNSVNLFNFAINKVAPEVTKKIHHFLSTGN-AFNTHY 485
Query: 398 DLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDG 457
+L Q G+ + +R+N+ RF S R++HRG F +R+T VRKLL E+WGF+CPVHTPDG
Sbjct: 486 ELNQSTGFAIVLDRINYHRFSSHLRSIHRGNIFMKMRSTQVRKLLGETWGFICPVHTPDG 545
Query: 458 EPCGLLNHMTSTCRVA------SYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKS 511
PCGLL H++ + SY +S I+ F K + L G + +
Sbjct: 546 APCGLLLHLSQYAKAVTTPNKPSYLNS---IKSFLKSQR-----LHNTGSTNKV-----N 592
Query: 512 GPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPG 571
G + +++DG V + E+E+ LR K + E + G +
Sbjct: 593 GGNDRIPLVVDGIPVAYVDVEEVEEFYDKLRTAKNLEKFGMCKHFETCAMRDKFG-VFSS 651
Query: 572 LYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAF------ 625
+Y+ T P + VRPVRNI + IELIGP Q++ I + N
Sbjct: 652 IYIMTFPGRLVRPVRNI-----KDNQIELIGPITQLWSTIAINEYELNKSHNKLLSLQSN 706
Query: 626 ------------------------PATHE--EIHPTGMLSVVANLTPYSDHNQSPRNMYQ 659
P +E E+ +LS+ A+LTP+S+HNQSPRNMYQ
Sbjct: 707 PSAMNKVQVPKVVKSLKDNELDNCPVLYEYVELDMCCILSLSASLTPFSNHNQSPRNMYQ 766
Query: 660 CQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAY 719
CQM KQ++G + +R++ K Y L + Q P+V T Y K G +YPTG N +VA++A+
Sbjct: 767 CQMLKQSVGIPFHSQFYRSEVKTYVLTSLQRPLVATKEYEKMGFQDYPTGVNCVVAIIAH 826
Query: 720 TGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSD--DGNKVDRGQKLFRRN--KDAKSL 775
+G+DMEDAMILNK+SVDRG+ + IY+++ +DL+ NK G + N KD+K +
Sbjct: 827 SGFDMEDAMILNKASVDRGLFNSFIYKSKVVDLNSQYSSNKERGGTVEYFNNMDKDSKLI 886
Query: 776 HSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNS--RKGSESVFVDYVAVDMKNSKN 833
+D DGLP +G+ + P+ I +K N+ + + E VD + + K+
Sbjct: 887 VKKLDFDGLPRLGEKLTKNSPFYRIEEKGKNNIMNDRVVKYTDEPAIVDQITLVGKSDLT 946
Query: 834 LPQK----------ANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRP 883
+ K A I+ R R+PI+GDKF+SRHGQKG+ S +WP DMPF G+ P
Sbjct: 947 VGDKISCPGLKHDRAIIKLRVLRSPIVGDKFASRHGQKGILSAVWPTEDMPFLE-NGIVP 1005
Query: 884 DLIINPHAFPSRMTIAMLLESVAAK 908
D+I NPH PSRMTI L+E +A K
Sbjct: 1006 DVIFNPHGLPSRMTIGKLIEGMAGK 1030
Score = 67.0 bits (162), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 65/124 (52%), Gaps = 10/124 (8%)
Query: 37 HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQ---------G 87
H + +Y L+ ++ ++ S + +E G P+M+++ RC+L+ G
Sbjct: 89 HAKTTHTTYEAPLIVTFGVKFFESESIITKE-VPVGHIPIMVRSNRCNLKVKFVDKKFTG 147
Query: 88 ADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAV 147
++++ E+ E GGYFI+ G E++ R +I+P+ NYP++ S + +T+ ++
Sbjct: 148 LSGEEMIKQGEDLDEPGGYFIIRGNEKMIRQLIVPRSNYPIAFKSESNSQKNVLFTEYSI 207
Query: 148 VIRC 151
+RC
Sbjct: 208 FMRC 211
>gi|308159405|gb|EFO61937.1| DNA-directed RNA polymerase subunit B [Giardia lamblia P15]
Length = 1236
Score = 365 bits (938), Expect = 5e-98, Method: Compositional matrix adjust.
Identities = 234/761 (30%), Positives = 380/761 (49%), Gaps = 51/761 (6%)
Query: 69 FNFGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPM 128
N G P+M+ ++ C L G ++ + L+E+ + GGYFI NG ++V R + N P+
Sbjct: 136 INAGDVPIMVGSKLCLLHGKTREEKIRLREDERDAGGYFISNGQDKVVRLYLDCLSNTPL 195
Query: 129 SMVRSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGI 188
+ + + V + VR+D + + + + + F + G+ +P+ +
Sbjct: 196 AFTKYRSLSTMSEFAPAGVHYKGVREDGHVYSTVIQARKDNFLSVKFTIDGRYIYVPLIL 255
Query: 189 VLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCL 248
VL+ALV T D EI+ + + KE G VS R++ +L + + + C
Sbjct: 256 VLRALVSTTDKEIYTTICTICSSAHPKEDG-----YVSLRIEAMLRDFHKYRIFSHKACK 310
Query: 249 QHIGEHFQPVIDGLQSESYYAV--AETVIRDYIFVHL--NDNNDKFNLLIFMLQKLFSLV 304
Q +G F+ ++ L + + + Y+ +++ D KFN++ M +K L
Sbjct: 311 QLLGGKFRMILSLLDRYDLTDIECCDLLFEQYLLINIPKEDTRAKFNMMCLMARKCLLLF 370
Query: 305 DHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGK--KFDFFN 362
SD+PD L +QE L PG L K ++ L K +LI + G ++ N
Sbjct: 371 GGFIQSDSPDMLSSQEALTPGAL----FKAEIASTLIKIMRLISRNATSTGAIGSYELSN 426
Query: 363 LANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFR 422
+ + + + + ++ G + G D +G +V A+R+N++RF++ FR
Sbjct: 427 SWISHYLASPKLWRPLSSGLRSLAGPGVMRAYKGHDYSNMSGISVLADRINYVRFLAHFR 486
Query: 423 AVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNI 482
++RG +FA + TS+RKL PES+GF C VHTPDG PCG+L H+ V S + I
Sbjct: 487 CINRGNAFATHKITSIRKLYPESYGFQCAVHTPDGAPCGILTHLCYKATVLSSTPTTDQI 546
Query: 483 RDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSE-IEKVVAHL 541
++ +L G+ PSL L V+L+G ++G + +++ ++VA +
Sbjct: 547 -------ANLFILLSQFGLSPSLSDTY------TLGVVLNGTILGFMDTNKRASQLVASI 593
Query: 542 RRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELI 601
R K+ +++ P + + +PG+Y+ TS +F RPV ++ + ++E I
Sbjct: 594 RAAKIE-STIFPYTEIIFIEKGNKDHLFPGIYMNTSMGRFYRPVHSLI-----NNSLEYI 647
Query: 602 GPFEQVFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQ 661
P EQ+F++I GD R TH+E+ PT +LS++ L P+SDHNQSPRNMY+CQ
Sbjct: 648 TPLEQIFLQIAI--YGDDVRSGV--TTHQEVTPTSLLSILGLLVPFSDHNQSPRNMYECQ 703
Query: 662 MAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKY-GIDEYPTGTNAIVAVLAYT 720
M KQTM + L +R D K Y L TPQ PIVR G D +PTGTN +VAV AYT
Sbjct: 704 MLKQTMAIPCRNLTYRYDAKSYLLTTPQKPIVRNAIIHDIGGFDTHPTGTNLVVAVSAYT 763
Query: 721 GYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDG-----NKVDRGQKLFRRNKDAKSL 775
YDMEDA ++NK+S++RG+ HG +Y ID DD + +R+ D
Sbjct: 764 SYDMEDAALINKASLERGLFHGTVYSVHDIDCYDDKLMRYMRSMTTAVPYLKRSPDYSVT 823
Query: 776 H------SVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRT 810
H + +D DGLP +G + G + YD T + T
Sbjct: 824 HMDENYDTELDEDGLPPIGAYLSHGSVFYQTYDPTKQCYST 864
Score = 99.4 bits (246), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 45/80 (56%), Positives = 58/80 (72%), Gaps = 1/80 (1%)
Query: 829 KNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIIN 888
K+S Q+ I RH R P++GDK +SRHGQKG+ W DMPF+ +G+ PDLIIN
Sbjct: 967 KSSLCFIQRVRIVIRHDRTPVVGDKVASRHGQKGIMGIRWRQTDMPFTS-SGIVPDLIIN 1025
Query: 889 PHAFPSRMTIAMLLESVAAK 908
PHAFPSRMT+ ML+ES+A+K
Sbjct: 1026 PHAFPSRMTVGMLIESLASK 1045
>gi|355565994|gb|EHH22423.1| hypothetical protein EGK_05684 [Macaca mulatta]
Length = 1039
Score = 346 bits (888), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 186/392 (47%), Positives = 246/392 (62%), Gaps = 13/392 (3%)
Query: 519 VLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGA-YPGLYLFTS 577
VLLDG +VG + + LR KV IP +EV +P++ + YPGL+LFT+
Sbjct: 460 VLLDGVMVGWVDKELAPGIADSLRHFKVLREKRIPPWMEVVLIPMTGKPSLYPGLFLFTT 519
Query: 578 PPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIHPTGM 637
P + VRPV+N+ L EE LIG EQ+FM + + A TH+E+ P +
Sbjct: 520 PCRLVRPVQNLELGKEE-----LIGTMEQIFMNVAIFED----EVFAGVTTHQELFPHSL 570
Query: 638 LSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNT 697
LSV+AN P+SDHNQSPRNMYQCQM KQTMGF + + R+D KLY LQTPQ+P+VR +
Sbjct: 571 LSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPSM 630
Query: 698 YTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGN 757
Y Y +D YP GTNAIVAV++YTGYDMEDAMI+NK+S +RG HG +Y++E IDLS+
Sbjct: 631 YDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKIK 690
Query: 758 KVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSE 817
+ D + D + L +D DGLP++G + G+PY S + T K E
Sbjct: 691 QGDSSLVFGIKPGDPRILQK-LDDDGLPFIGAKLQYGDPYYSYLNLNTGESFVMYYKSKE 749
Query: 818 SVFVDYVAVDMKNSKNLPQKA-NIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFS 876
+ VD + V ++ + K I R RNP IGDKF+SRHGQKG+ S+LWP DMPF+
Sbjct: 750 NCVVDNIKVCSNDTGSGKFKCVCITMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFT 809
Query: 877 GVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
+GM PD++ NPH FPSRMTI ML+ES+A K
Sbjct: 810 E-SGMVPDILFNPHGFPSRMTIGMLIESIAGK 840
Score = 210 bits (534), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 134/427 (31%), Positives = 211/427 (49%), Gaps = 62/427 (14%)
Query: 12 LRELVRHHIESFDYMLDEGLS--------------------EMFD--------------- 36
L+EL R H+ESF+Y + EGL + D
Sbjct: 35 LQELTRAHVESFNYAVHEGLGLAVQAIPPFEFAFKDERISFTILDAVISPPTVPKGTICK 94
Query: 37 -------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGAD 89
CR + +Y GKL D+ + ++++ G P+M+K++ C+L
Sbjct: 95 EVSVYPAECRGRRSTYRGKL-TDINWAVNGISKGIIKQFL--GYVPIMVKSKLCNLHSLP 151
Query: 90 SQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVI 149
Q L+ EEA EMGGYFI+NG+E+V R +I+P++N+P++M+R ++ R GYT + +
Sbjct: 152 PQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWKTRGPGYTQYS--M 209
Query: 150 RCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY 209
CVR++ S+V + L+YL NG+V L F + + + LP+G LKALV +D +IF L
Sbjct: 210 HCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELI--- 266
Query: 210 DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYA 269
KE + VS+ ++I++ E +T+ Q L ++G F+ ++
Sbjct: 267 ---KGKEDDSFLRNSVSQMLRIVMEE----GCSTQKQVLNYLGGCFRVKLNVPDWYPNEQ 319
Query: 270 VAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
AE + I +HL N +KF +L M +KLF+L + DNPDSL NQE+L PG L
Sbjct: 320 AAEFLFNQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMEDNPDSLVNQEVLTPGQLFL 379
Query: 330 IYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTG 389
++LKEKLE WL K + + + NL I + + E + TG
Sbjct: 380 MFLKEKLEGWLVSIKIAFDKKAQKTNVSMNTDNLMRIFTM-----GIDLTKPFEYLFATG 434
Query: 390 RLATQTG 396
L ++TG
Sbjct: 435 NLRSKTG 441
>gi|39644698|gb|AAH04882.4| POLR1B protein [Homo sapiens]
Length = 582
Score = 345 bits (886), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 186/392 (47%), Positives = 247/392 (63%), Gaps = 13/392 (3%)
Query: 519 VLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGA-YPGLYLFTS 577
VLLDG +VG + + LR KV IP +EV +P++ + YPGL+LFT+
Sbjct: 3 VLLDGVMVGWVDKDLAPGIADSLRHFKVLREKRIPPWMEVVLIPMTGKPSLYPGLFLFTT 62
Query: 578 PPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIHPTGM 637
P + VRPV+N++L EE LIG EQ+FM + + A TH+E+ P +
Sbjct: 63 PCRLVRPVQNLALGKEE-----LIGTMEQIFMNVAIFED----EVFAGVTTHQELFPHSL 113
Query: 638 LSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNT 697
LSV+AN P+SDHNQSPRNMYQCQM KQTMGF + + R+D KLY LQTPQ+P+VR +
Sbjct: 114 LSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPSM 173
Query: 698 YTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGN 757
Y Y +D YP GTNAIVAV++YTGYDMEDAMI+NK+S +RG HG +Y++E IDLS+
Sbjct: 174 YDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKIK 233
Query: 758 KVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSE 817
+ D + D + L +D DGLP++G + G+PY S + T K E
Sbjct: 234 QGDSSLVFGIKPGDPRVLQK-LDDDGLPFIGAKLQYGDPYYSYLNLNTGESFVMYYKSKE 292
Query: 818 SVFVDYVAVDMKNSKNLPQKA-NIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFS 876
+ VD + V ++ + K I R RNP IGDKF+SRHGQKG+ S+LWP DMPF+
Sbjct: 293 NCVVDNIKVCSNDTGSGKFKCVCITMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFT 352
Query: 877 GVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
+GM PD++ NPH FPSRMTI ML+ES+A K
Sbjct: 353 E-SGMVPDILFNPHGFPSRMTIGMLIESMAGK 383
>gi|67678361|gb|AAH96748.1| POLR1B protein, partial [Homo sapiens]
Length = 594
Score = 345 bits (886), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 186/392 (47%), Positives = 247/392 (63%), Gaps = 13/392 (3%)
Query: 519 VLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGA-YPGLYLFTS 577
VLLDG +VG + + LR KV IP +EV +P++ + YPGL+LFT+
Sbjct: 15 VLLDGVMVGWVDKDLAPGIADSLRHFKVLREKRIPPWMEVVLIPMTGKPSLYPGLFLFTT 74
Query: 578 PPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIHPTGM 637
P + VRPV+N++L EE LIG EQ+FM + + A TH+E+ P +
Sbjct: 75 PCRLVRPVQNLALGKEE-----LIGTMEQIFMNVAIFED----EVFAGVTTHQELFPHSL 125
Query: 638 LSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNT 697
LSV+AN P+SDHNQSPRNMYQCQM KQTMGF + + R+D KLY LQTPQ+P+VR +
Sbjct: 126 LSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPSM 185
Query: 698 YTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGN 757
Y Y +D YP GTNAIVAV++YTGYDMEDAMI+NK+S +RG HG +Y++E IDLS+
Sbjct: 186 YDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKIK 245
Query: 758 KVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSE 817
+ D + D + L +D DGLP++G + G+PY S + T K E
Sbjct: 246 QGDSSLVFGIKPGDPRVLQE-LDDDGLPFIGAKLQYGDPYYSYLNLNTGESFVMYYKSKE 304
Query: 818 SVFVDYVAVDMKNSKNLPQKA-NIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFS 876
+ VD + V ++ + K I R RNP IGDKF+SRHGQKG+ S+LWP DMPF+
Sbjct: 305 NCVVDNIKVCSNDTGSGKFKCVCITMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFT 364
Query: 877 GVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
+GM PD++ NPH FPSRMTI ML+ES+A K
Sbjct: 365 E-SGMVPDILFNPHGFPSRMTIGMLIESMAGK 395
>gi|327284651|ref|XP_003227050.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2-like, partial
[Anolis carolinensis]
Length = 662
Score = 342 bits (876), Expect = 7e-91, Method: Compositional matrix adjust.
Identities = 189/514 (36%), Positives = 290/514 (56%), Gaps = 40/514 (7%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR + +Y GKLM DV + V+++ + G P+M+K++ C+L G ++L+
Sbjct: 103 CRGRRSTYRGKLMVDVSWSVNGIPKGVIKQ--SLGHVPIMVKSKLCNLHGLSPKELIKHH 160
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
EE EMGGYFI+NG+E+V R +I+P++N+P+++++ ++ R GYT+ + +RCVR++ +
Sbjct: 161 EEQEEMGGYFIINGIEKVMRLIIMPRRNFPLAVIKPKWKSRGHGYTEYGISMRCVREEHT 220
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
+V + L+YL NG+V L F Q + + LP+G VLK LV +D +IF L K
Sbjct: 221 AVNMTLHYLENGTVMLNFIHQKELFFLPLGFVLKGLVGFSDFQIFQELI----------K 270
Query: 218 GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRD 277
G V +L V + T+ Q L +G+ F+ ++ + V E +
Sbjct: 271 GKEDDTFYKNCVSQMLRMVSEEGCMTQKQALVFLGQRFRVKMNLPEWYPSEQVGEFLFEQ 330
Query: 278 YIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLE 337
I +HL +KF LL M +KLF+L + +NPDSL NQE+L G L ++LKEK+E
Sbjct: 331 CICIHLKSKAEKFYLLCLMTRKLFTLAKEGCMEENPDSLMNQEVLTSGQLYLMFLKEKME 390
Query: 338 DWLRKGKKLIQDEIENNGKKFDF-FNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTG 396
WL+ I+ ++ +K + FN + K++ + +E +L TG L ++TG
Sbjct: 391 FWLQS----IKITVDKKAQKSNITFNSEGMMKIL--GMGVDLTRMLEYLLATGNLRSRTG 444
Query: 397 LDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPD 456
L + Q +G +V A++LNF+R++S FR VHRGA F +RTT+VRKLLPESWGFLCPVHTPD
Sbjct: 445 LGMLQTSGLSVMADKLNFVRYLSHFRCVHRGADFIKMRTTTVRKLLPESWGFLCPVHTPD 504
Query: 457 GEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPP-- 514
GEPCGL+NH+T+ C + + S TS+ +L +G+ P+ G P
Sbjct: 505 GEPCGLMNHLTAPCEIVTQ----------SLFTTSLPSLLCSLGVTPT------DGVPNQ 548
Query: 515 ---AVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK 545
V LDG +VG I +V LR K
Sbjct: 549 PYSECYPVTLDGSLVGWIEKDLAPGLVETLRHCK 582
>gi|156034861|ref|XP_001585849.1| hypothetical protein SS1G_13366 [Sclerotinia sclerotiorum 1980]
gi|154698769|gb|EDN98507.1| hypothetical protein SS1G_13366 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 1165
Score = 337 bits (865), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 181/410 (44%), Positives = 251/410 (61%), Gaps = 34/410 (8%)
Query: 519 VLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSP 578
V LDG+++G + + LR KV +P +LE+GY+P S GG YPG+YL +P
Sbjct: 548 VQLDGKIMGWCSPKQSLVIADTLRYWKVEGTHGVPTNLEIGYIPNSHGGQYPGIYLSAAP 607
Query: 579 PKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIHPTGML 638
+ VRPV+ ++L E+ +GP EQ FM I + A TH E PT +L
Sbjct: 608 ARMVRPVKYLALDKED-----FVGPLEQPFMSIAVTEQ----EIEAGEHTHVEFDPTHIL 658
Query: 639 SVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTY 698
S++AN+TP+SD NQSPRNMYQCQM KQ+MG A+++R D K Y LQT QTPIVR +
Sbjct: 659 SILANMTPFSDFNQSPRNMYQCQMGKQSMGTPGTAIRYRTDNKAYRLQTGQTPIVRAPLH 718
Query: 699 TKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNK 758
YG D +P G N++VAV++YTGYDM+DAMI+NKS+ +RG HG IY+T+ +L ++G+K
Sbjct: 719 NDYGFDNFPNGMNSVVAVISYTGYDMDDAMIINKSAHERGFGHGTIYKTKKYEL-EEGHK 777
Query: 759 VDRG---QKLFRRNKDA---KSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNS 812
+KLF + ID DGLP++G+M+ G+ + + T S N
Sbjct: 778 SRSARNIKKLFGFAPGGLVKAEWKAAIDEDGLPFIGRMVQNGDLIAAWH---TVSMDENG 834
Query: 813 R-------------KGSESVFVDYV-AVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRH 858
+ K +E F++ V + +N Q +++ R R+P+IGDKFSSRH
Sbjct: 835 KYVNRDGQTHFEKYKETEIAFIEEVRLIGNENGIEPCQAISVKLRIPRSPVIGDKFSSRH 894
Query: 859 GQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
GQKGVCSQ WP +DMPF+ +G++PD IINPHAFPSRMTI M +ES+A K
Sbjct: 895 GQKGVCSQKWPAVDMPFT-ESGIQPDTIINPHAFPSRMTIGMFVESLAGK 943
Score = 298 bits (763), Expect = 8e-78, Method: Compositional matrix adjust.
Identities = 165/421 (39%), Positives = 256/421 (60%), Gaps = 24/421 (5%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR+ ++Y GK+ A +E+ ++ G P R + GQ P+ML + +CHLQ +LV K
Sbjct: 121 CRERHVTYRGKMSARMEYS-INNGDPKEFIR-DLGQLPLMLMSNKCHLQNNSPAQLVQNK 178
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
EE+ E+GGYF++NG+E++ R +++ ++N+PM+++R SF+ R YT+ ++IR VR DQ+
Sbjct: 179 EESEELGGYFVVNGIEKIIRLLVVNRRNFPMAIIRPSFKGRGPAYTEFGMLIRSVRPDQT 238
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
S T L+YL +G+V F + E+L+P ++LKALV+TND EIF L K
Sbjct: 239 SQTNVLHYLNDGNVTFRFSWRKNEFLVPAMMILKALVETNDKEIFEGLVGTPGSK----- 293
Query: 218 GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRD 277
+ +++RV+++L + L T+ + ++GE F+ V+ + S Y V +R
Sbjct: 294 -GTDNTFLNDRVELLLRTYKAYGLYTKSKTRAYLGEKFRIVLGVPDTMSNYDVGTEFLRK 352
Query: 278 YIFVHLNDNN-------DKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITI 330
+ VHL + N DKF +L+FM +KL+SLV DNPD++QNQEILL G L +
Sbjct: 353 IVLVHLGNTNVTEAQDKDKFKMLLFMTRKLYSLVAGDCAGDNPDAVQNQEILLGGFLFGM 412
Query: 331 YLKEKLEDWLRKGKKL-----IQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETM 385
+KE+LEDWL ++ ++ ENN +F +K N +Q+G ++E
Sbjct: 413 IIKERLEDWLHTSLRMALRDYVRRSPENNFVTPEFLKDFPVKICSRTN--EQVGGALEYF 470
Query: 386 LKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSV--RKLLP 443
+ TG L + TGLDLQQ +G+TV AE++NFLRFI+ FR +HRG+ FA L+TT+V KLL
Sbjct: 471 MSTGNLVSPTGLDLQQTSGFTVVAEKINFLRFIAHFRMIHRGSFFAQLKTTTVPLPKLLS 530
Query: 444 E 444
E
Sbjct: 531 E 531
>gi|15208247|dbj|BAB63148.1| hypothetical protein [Macaca fascicularis]
Length = 441
Score = 337 bits (863), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 181/386 (46%), Positives = 241/386 (62%), Gaps = 13/386 (3%)
Query: 525 VVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGA-YPGLYLFTSPPKFVR 583
+VG + + LR KV IP +EV +P++ + YPGL+LFT+P + VR
Sbjct: 1 MVGWVDKELAPGIADSLRHFKVLREKRIPPWMEVVLIPMTGKPSLYPGLFLFTTPCRLVR 60
Query: 584 PVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVAN 643
PV+N+ L EE LIG EQ+FM + + A TH+E+ P +LSV+AN
Sbjct: 61 PVQNLELGKEE-----LIGTMEQIFMNVAIFED----EVFAGVTTHQELFPHSLLSVIAN 111
Query: 644 LTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGI 703
P+SDHNQSPRNMYQCQM KQTMGF + + R+D KLY LQTPQ+P+VR + Y Y +
Sbjct: 112 FIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDM 171
Query: 704 DEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQ 763
D YP GTNAIVAV++YTGYDMEDAMI+NK+S +RG HG +Y++E IDLS+ + D
Sbjct: 172 DNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKIKQGDSSL 231
Query: 764 KLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDY 823
+ D + L +D DGLP++G + G+PY S + T K E+ VD
Sbjct: 232 VFGIKPGDPRILQK-LDDDGLPFIGAKLQYGDPYYSYLNLNTGESFVMYYKSKENCVVDN 290
Query: 824 VAVDMKNSKNLPQKA-NIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMR 882
+ V ++ + K I R RNP IGDKF+SRHGQKG+ S+LWP DMPF+ +GM
Sbjct: 291 IKVCSNDTGSGKFKCVCITMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTE-SGMV 349
Query: 883 PDLIINPHAFPSRMTIAMLLESVAAK 908
PD++ NPH FPSRMTI ML+ES+A K
Sbjct: 350 PDILFNPHGFPSRMTIGMLIESMAGK 375
>gi|49522875|gb|AAH73857.1| POLR1B protein, partial [Homo sapiens]
Length = 560
Score = 336 bits (861), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 179/370 (48%), Positives = 237/370 (64%), Gaps = 13/370 (3%)
Query: 541 LRRLKVSAASVIPDDLEVGYVPLSLGGA-YPGLYLFTSPPKFVRPVRNISLPSEESQNIE 599
LR KV IP +EV +P++ + YPGL+LFT+P + VRPV+N++L EE
Sbjct: 3 LRHFKVLREKRIPPWMEVVLIPMTGKPSLYPGLFLFTTPCRLVRPVQNLALGKEE----- 57
Query: 600 LIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQ 659
LIG EQ+FM + + A TH+E+ P +LSV+AN P+SDHNQSPRNMYQ
Sbjct: 58 LIGTMEQIFMNVAIFED----EVFAGVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQ 113
Query: 660 CQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAY 719
CQM KQTMGF + + R+D KLY LQTPQ+P+VR + Y Y +D YP GTNAIVAV++Y
Sbjct: 114 CQMGKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVAVISY 173
Query: 720 TGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVI 779
TGYDMEDAMI+NK+S +RG HG +Y++E IDLS+ + D + D + L +
Sbjct: 174 TGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKIKQGDSSLVFGIKPGDPRVLQK-L 232
Query: 780 DSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKA- 838
D DGLP++G + G+PY S + T K E+ VD + V ++ + K
Sbjct: 233 DDDGLPFIGAKLQYGDPYYSYLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGKFKCV 292
Query: 839 NIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTI 898
I R RNP IGDKF+SRHGQKG+ S+LWP DMPF+ +GM PD++ NPH FPSRMTI
Sbjct: 293 CITMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTE-SGMVPDILFNPHGFPSRMTI 351
Query: 899 AMLLESVAAK 908
ML+ES+A K
Sbjct: 352 GMLIESMAGK 361
>gi|83405170|gb|AAI10834.1| POLR1B protein [Homo sapiens]
Length = 952
Score = 333 bits (854), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 175/359 (48%), Positives = 233/359 (64%), Gaps = 13/359 (3%)
Query: 552 IPDDLEVGYVPLSLGGA-YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFME 610
IP +EV +P++ + YPGL+LFT+P + VRPV+N++L EE LIG EQ+FM
Sbjct: 406 IPPWMEVVLIPMTGKPSLYPGLFLFTTPCRLVRPVQNLALGKEE-----LIGTMEQIFMN 460
Query: 611 IRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFS 670
+ + A TH+E+ P +LSV+AN P+SDHNQSPRNMYQCQM KQTMGF
Sbjct: 461 VAIFED----EVFAGVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFP 516
Query: 671 VQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMIL 730
+ + R+D KLY LQTPQ+P+VR + Y Y +D YP GTNAIVAV++YTGYDMEDAMI+
Sbjct: 517 LLTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIV 576
Query: 731 NKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQM 790
NK+S +RG HG +Y++E IDLS+ + D + D + L +D DGLP++G
Sbjct: 577 NKASWERGFAHGSVYKSEFIDLSEKIKQGDSSLVFGIKPGDPRVLQK-LDDDGLPFIGAK 635
Query: 791 IHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHTRNPI 849
+ G+PY S + T K E+ VD + V ++ + K I R RNP
Sbjct: 636 LQYGDPYYSYLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGKFKCVCITMRVPRNPT 695
Query: 850 IGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
IGDKF+SRHGQKG+ S+LWP DMPF+ +GM PD++ NPH FPSRMTI ML+ES+A K
Sbjct: 696 IGDKFASRHGQKGILSRLWPAEDMPFTE-SGMVPDILFNPHGFPSRMTIGMLIESMAGK 753
Score = 207 bits (528), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 122/367 (33%), Positives = 190/367 (51%), Gaps = 54/367 (14%)
Query: 12 LRELVRHHIESFDYMLDEGLS--------------------EMFD--------------- 36
L+EL R H+ESF+Y + EGL + D
Sbjct: 35 LQELTRAHVESFNYAVHEGLGLAVQAIPPFEFAFKDERISFTILDAVISPPTVPKGTICK 94
Query: 37 -------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGAD 89
CR + +Y GKL AD+ + ++++ G P+M+K++ C+L+
Sbjct: 95 EANVYPAECRGRRSTYRGKLTADINWAVNGISKGIIKQFL--GYVPIMVKSKLCNLRNLP 152
Query: 90 SQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVI 149
Q L+ EEA EMGGYFI+NG+E+V R +I+P++N+P++M+R ++ R GYT V +
Sbjct: 153 PQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWKTRGPGYTQYGVSM 212
Query: 150 RCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY 209
CVR++ S+V + L+YL NG+V L F + + + LP+G LKALV +D +IF L
Sbjct: 213 HCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELI--- 269
Query: 210 DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYA 269
KE + VS+ ++I++ E T+ Q L ++GE F+ ++
Sbjct: 270 ---KGKEDDSFLRNSVSQMLRIVMEE----GCLTQKQVLNYLGECFRVKLNVPDWYPNEQ 322
Query: 270 VAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
AE + I +HL N +KF +L M +KLF+L + DNPDSL NQE+L PG L
Sbjct: 323 AAEFLFNQCICIHLKSNTEKFYMLCLMTRKLFALAKGGCMEDNPDSLVNQEVLTPGQLFL 382
Query: 330 IYLKEKL 336
++LK L
Sbjct: 383 MFLKGSL 389
>gi|114579606|ref|XP_001144853.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 2
[Pan troglodytes]
Length = 952
Score = 333 bits (853), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 175/359 (48%), Positives = 232/359 (64%), Gaps = 13/359 (3%)
Query: 552 IPDDLEVGYVPLSLGGA-YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFME 610
IP +EV +P++ + YPGL+LFT+P + VRPV+N+ L EE LIG EQ+FM
Sbjct: 406 IPPWMEVVLIPMTGKPSLYPGLFLFTTPCRLVRPVQNLELGKEE-----LIGTMEQIFMN 460
Query: 611 IRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFS 670
+ + A TH+E+ P +LSV+AN P+SDHNQSPRNMYQCQM KQTMGF
Sbjct: 461 VAIFED----EVFAGVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFP 516
Query: 671 VQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMIL 730
+ + R+D KLY LQTPQ+P+VR + Y Y +D YP GTNAIVAV++YTGYDMEDAMI+
Sbjct: 517 ILTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIV 576
Query: 731 NKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQM 790
NK+S +RG HG +Y++E IDLS+ + D + D + L +D DGLP++G
Sbjct: 577 NKASWERGFAHGSVYKSEFIDLSEKIKQGDSSLVFGIKPGDPRVLQK-LDDDGLPFIGAK 635
Query: 791 IHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHTRNPI 849
+ G+PY S + T K E+ VD + V ++ + K I R RNP
Sbjct: 636 LQYGDPYYSYLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGKFKCVCITMRVPRNPT 695
Query: 850 IGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
IGDKF+SRHGQKG+ S+LWP DMPF+ +GM PD++ NPH FPSRMTI ML+ES+A K
Sbjct: 696 IGDKFASRHGQKGILSRLWPAEDMPFTE-SGMVPDILFNPHGFPSRMTIGMLIESMAGK 753
Score = 207 bits (528), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 122/367 (33%), Positives = 190/367 (51%), Gaps = 54/367 (14%)
Query: 12 LRELVRHHIESFDYMLDEGLS--------------------EMFD--------------- 36
L+EL R H+ESF+Y + EGL + D
Sbjct: 35 LQELTRAHVESFNYAVHEGLGLAVQAIPPFEFAFKDERISFTILDAVISPPTVPKGTICK 94
Query: 37 -------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGAD 89
CR + +Y GKL AD+ + ++++ G P+M+K++ C+L+
Sbjct: 95 EANVYPAECRGRRSTYRGKLTADINWAVNGISKGIIKQFL--GYVPIMVKSKLCNLRNLP 152
Query: 90 SQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVI 149
Q L+ EEA EMGGYFI+NG+E+V R +I+P++N+P++M+R ++ R GYT V +
Sbjct: 153 PQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWKTRGPGYTQYGVSM 212
Query: 150 RCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY 209
CVR++ S+V + L+YL NG+V L F + + + LP+G LKALV +D +IF L
Sbjct: 213 HCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELI--- 269
Query: 210 DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYA 269
KE + VS+ ++I++ E T+ Q L ++GE F+ ++
Sbjct: 270 ---KGKEDDSFLRNSVSQMLRIVMEE----GCLTQKQVLNYLGECFRVKLNVPDWYPNEQ 322
Query: 270 VAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
AE + I +HL N +KF +L M +KLF+L + DNPDSL NQE+L PG L
Sbjct: 323 AAEFLFNQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMEDNPDSLVNQEVLTPGQLFL 382
Query: 330 IYLKEKL 336
++LK L
Sbjct: 383 MFLKGSL 389
>gi|402891938|ref|XP_003909185.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 4
[Papio anubis]
Length = 952
Score = 332 bits (852), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 175/359 (48%), Positives = 232/359 (64%), Gaps = 13/359 (3%)
Query: 552 IPDDLEVGYVPLSLGGA-YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFME 610
IP +EV +P++ + YPGL+LFT+P + VRPV+N+ L EE LIG EQ+FM
Sbjct: 406 IPPWMEVVLIPMTGKPSLYPGLFLFTTPCRLVRPVQNLELGKEE-----LIGTMEQIFMN 460
Query: 611 IRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFS 670
+ + A TH+E+ P +LSV+AN P+SDHNQSPRNMYQCQM KQTMGF
Sbjct: 461 VAIFED----EVFAGVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFP 516
Query: 671 VQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMIL 730
+ + R+D KLY LQTPQ+P+VR + Y Y +D YP GTNAIVAV++YTGYDMEDAMI+
Sbjct: 517 LLTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIV 576
Query: 731 NKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQM 790
NK+S +RG HG +Y++E IDLS+ + D + D + L +D DGLP++G
Sbjct: 577 NKASWERGFAHGSVYKSEFIDLSEKIKQGDSSLVFGIKPGDPRVLQK-LDDDGLPFIGAK 635
Query: 791 IHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHTRNPI 849
+ G+PY S + T K E+ VD + V ++ + K I R RNP
Sbjct: 636 LQYGDPYYSYLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGKFKCVCITMRVPRNPT 695
Query: 850 IGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
IGDKF+SRHGQKG+ S+LWP DMPF+ +GM PD++ NPH FPSRMTI ML+ES+A K
Sbjct: 696 IGDKFASRHGQKGILSRLWPAEDMPFTE-SGMVPDILFNPHGFPSRMTIGMLIESMAGK 753
Score = 207 bits (527), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 121/367 (32%), Positives = 190/367 (51%), Gaps = 54/367 (14%)
Query: 12 LRELVRHHIESFDYMLDEGLS--------------------EMFD--------------- 36
L+EL R H+ESF+Y + EGL + D
Sbjct: 35 LQELTRAHVESFNYAVHEGLGLAVQAIPPFEFAFKDERISFTILDAVISPPTVPKGTICK 94
Query: 37 -------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGAD 89
CR + +Y GKL AD+ + ++++ G P+M+K++ C+L
Sbjct: 95 EVSVYPAECRGRRSTYRGKLTADINWAVNGISKGIIKQ--CLGYVPIMVKSKLCNLHSLP 152
Query: 90 SQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVI 149
Q L+ EEA EMGGYFI+NG+E+V R +I+P++N+P++M+R ++ R GYT V +
Sbjct: 153 PQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWKTRGPGYTQYGVSM 212
Query: 150 RCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY 209
CVR++ S+V + L+YL NG+V L F + + + LP+G LKALV +D +IF L
Sbjct: 213 HCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELI--- 269
Query: 210 DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYA 269
KE + VS+ ++I++ E +T+ Q L ++GE F+ ++
Sbjct: 270 ---KGKEDDSFLRNSVSQMLRIVMEE----GCSTQKQVLNYLGECFRVKLNVPDWYPNEQ 322
Query: 270 VAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
AE + I +HL + +KF +L M +KLF+L + DNPDSL NQE+L PG L
Sbjct: 323 AAEFLFNQCICIHLKSSTEKFYMLCLMTRKLFALAKGECMEDNPDSLVNQEVLTPGQLFL 382
Query: 330 IYLKEKL 336
++LK L
Sbjct: 383 MFLKGSL 389
>gi|397465562|ref|XP_003804560.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 4
[Pan paniscus]
Length = 952
Score = 332 bits (851), Expect = 6e-88, Method: Compositional matrix adjust.
Identities = 175/359 (48%), Positives = 232/359 (64%), Gaps = 13/359 (3%)
Query: 552 IPDDLEVGYVPLSLGGA-YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFME 610
IP +EV +P++ + YPGL+LFT+P + VRPV+N+ L EE LIG EQ+FM
Sbjct: 406 IPPWMEVVLIPMTGKPSLYPGLFLFTTPCRLVRPVQNLELGKEE-----LIGTMEQIFMN 460
Query: 611 IRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFS 670
+ + A TH+E+ P +LSV+AN P+SDHNQSPRNMYQCQM KQTMGF
Sbjct: 461 VAIFED----EVFAGVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFP 516
Query: 671 VQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMIL 730
+ + R+D KLY LQTPQ+P+VR + Y Y +D YP GTNAIVAV++YTGYDMEDAMI+
Sbjct: 517 LLTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIV 576
Query: 731 NKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQM 790
NK+S +RG HG +Y++E IDLS+ + D + D + L +D DGLP++G
Sbjct: 577 NKASWERGFAHGSVYKSEFIDLSEKIKQGDSSLVFGIKPGDPRVLQK-LDDDGLPFIGAK 635
Query: 791 IHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHTRNPI 849
+ G+PY S + T K E+ VD + V ++ + K I R RNP
Sbjct: 636 LQYGDPYYSYLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGKFKCVCITMRVPRNPT 695
Query: 850 IGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
IGDKF+SRHGQKG+ S+LWP DMPF+ +GM PD++ NPH FPSRMTI ML+ES+A K
Sbjct: 696 IGDKFASRHGQKGILSRLWPAEDMPFTE-SGMVPDILFNPHGFPSRMTIGMLIESMAGK 753
Score = 207 bits (528), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 122/367 (33%), Positives = 190/367 (51%), Gaps = 54/367 (14%)
Query: 12 LRELVRHHIESFDYMLDEGLS--------------------EMFD--------------- 36
L+EL R H+ESF+Y + EGL + D
Sbjct: 35 LQELTRAHVESFNYAVHEGLGLAVQAIPPFEFAFKDERISFTILDAVISPPTVPKGTICK 94
Query: 37 -------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGAD 89
CR + +Y GKL AD+ + ++++ G P+M+K++ C+L+
Sbjct: 95 EANVYPAECRGRRSTYRGKLTADINWAVNGISKGIIKQFL--GYVPIMVKSKLCNLRNLP 152
Query: 90 SQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVI 149
Q L+ EEA EMGGYFI+NG+E+V R +I+P++N+P++M+R ++ R GYT V +
Sbjct: 153 PQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWKTRGPGYTQYGVSM 212
Query: 150 RCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY 209
CVR++ S+V + L+YL NG+V L F + + + LP+G LKALV +D +IF L
Sbjct: 213 HCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELI--- 269
Query: 210 DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYA 269
KE + VS+ ++I++ E T+ Q L ++GE F+ ++
Sbjct: 270 ---KGKEDDSFLRNSVSQMLRIVMEE----GCLTQKQVLNYLGECFRVKLNVPDWYPNEQ 322
Query: 270 VAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
AE + I +HL N +KF +L M +KLF+L + DNPDSL NQE+L PG L
Sbjct: 323 AAEFLFNQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMEDNPDSLVNQEVLTPGQLFL 382
Query: 330 IYLKEKL 336
++LK L
Sbjct: 383 MFLKGSL 389
>gi|426336849|ref|XP_004031667.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 4
[Gorilla gorilla gorilla]
Length = 952
Score = 332 bits (850), Expect = 7e-88, Method: Compositional matrix adjust.
Identities = 175/359 (48%), Positives = 232/359 (64%), Gaps = 13/359 (3%)
Query: 552 IPDDLEVGYVPLSLGGA-YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFME 610
IP +EV +P++ + YPGL+LFT+P + VRPV+N+ L EE LIG EQ+FM
Sbjct: 406 IPPWMEVVLIPMTGKPSLYPGLFLFTTPCRLVRPVQNLELGKEE-----LIGTMEQIFMN 460
Query: 611 IRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFS 670
+ + A TH+E+ P +LSV+AN P+SDHNQSPRNMYQCQM KQTMGF
Sbjct: 461 VAIFED----EVFAGVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFP 516
Query: 671 VQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMIL 730
+ + R+D KLY LQTPQ+P+VR + Y Y +D YP GTNAIVAV++YTGYDMEDAMI+
Sbjct: 517 LLTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIV 576
Query: 731 NKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQM 790
NK+S +RG HG +Y++E IDLS+ + D + D + L +D DGLP++G
Sbjct: 577 NKASWERGFAHGSVYKSEFIDLSEKIKQGDTSLVFGIKPGDPRVLQK-LDDDGLPFIGAK 635
Query: 791 IHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHTRNPI 849
+ G+PY S + T K E+ VD + V ++ + K I R RNP
Sbjct: 636 LQYGDPYYSYLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGKFKCVCITMRVPRNPT 695
Query: 850 IGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
IGDKF+SRHGQKG+ S+LWP DMPF+ +GM PD++ NPH FPSRMTI ML+ES+A K
Sbjct: 696 IGDKFASRHGQKGILSRLWPAEDMPFTE-SGMVPDILFNPHGFPSRMTIGMLIESMAGK 753
Score = 208 bits (530), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 122/367 (33%), Positives = 191/367 (52%), Gaps = 54/367 (14%)
Query: 12 LRELVRHHIESFDYMLDEGLS--------------------EMFD--------------- 36
L+EL R H+ESF+Y + EGL + D
Sbjct: 35 LQELTRAHVESFNYAVHEGLGLAVQAIPPFEFAFKDERISFTILDAVISPPTVPKGTICK 94
Query: 37 -------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGAD 89
CR + +Y GKL AD+ + ++++ G P+M+K++ C+L+
Sbjct: 95 EANVYPAECRGRRSTYRGKLTADINWAVNGISKGIIKQFL--GYVPIMVKSKLCNLRNLP 152
Query: 90 SQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVI 149
Q L+ EEA EMGGYFI+NG+E+V R +I+P++N+P++M+R ++ R GYT V +
Sbjct: 153 PQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWKTRGPGYTQYGVSM 212
Query: 150 RCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY 209
CVR++ S+V + L+YL NG+V L F + + + LP+G LKALV +D +IF L
Sbjct: 213 HCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELI--- 269
Query: 210 DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYA 269
KE + VS+ ++I++ E +T+ Q L ++GE F+ ++
Sbjct: 270 ---KGKEDDSFLRNSVSQMLRIVMEE----GCSTQKQVLNYLGECFRVKLNVPDWYPNEQ 322
Query: 270 VAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
AE + I +HL N +KF +L M +KLF+L + DNPDSL NQE+L PG L
Sbjct: 323 AAEFLFNQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMEDNPDSLVNQEVLTPGQLFL 382
Query: 330 IYLKEKL 336
++LK L
Sbjct: 383 MFLKGSL 389
>gi|332257262|ref|XP_003277728.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 isoform 4
[Nomascus leucogenys]
Length = 952
Score = 331 bits (848), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 174/359 (48%), Positives = 232/359 (64%), Gaps = 13/359 (3%)
Query: 552 IPDDLEVGYVPLSLGGA-YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFME 610
IP +EV +P++ + YPGL+LFT+P + VRPV+N+ + EE LIG EQ+FM
Sbjct: 406 IPPWMEVVLIPMTGKPSLYPGLFLFTTPCRLVRPVQNLEMGKEE-----LIGTMEQIFMN 460
Query: 611 IRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFS 670
+ + A TH+E+ P +LSV+AN P+SDHNQSPRNMYQCQM KQTMGF
Sbjct: 461 VAIFED----EVFAGVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFP 516
Query: 671 VQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMIL 730
+ + R+D KLY LQTPQ+P+VR + Y Y +D YP GTNAIVAV++YTGYDMEDAMI+
Sbjct: 517 LLTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIV 576
Query: 731 NKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQM 790
NK+S +RG HG +Y++E IDLS+ + D + D + L +D DGLP++G
Sbjct: 577 NKASWERGFAHGSVYKSEFIDLSEKIKQGDSSLVFGIKPGDPRVLQK-LDDDGLPFIGAK 635
Query: 791 IHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHTRNPI 849
+ G+PY S + T K E+ VD + V ++ + K I R RNP
Sbjct: 636 LQYGDPYYSYLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGKFKCVCITMRVPRNPT 695
Query: 850 IGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
IGDKF+SRHGQKG+ S+LWP DMPF+ +GM PD++ NPH FPSRMTI ML+ES+A K
Sbjct: 696 IGDKFASRHGQKGILSRLWPAEDMPFTE-SGMVPDILFNPHGFPSRMTIGMLIESMAGK 753
Score = 209 bits (531), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 122/367 (33%), Positives = 190/367 (51%), Gaps = 54/367 (14%)
Query: 12 LRELVRHHIESFDYMLDEGLS--------------------EMFD--------------- 36
L+EL R H+ESF+Y + EGL + D
Sbjct: 35 LQELTRAHVESFNYAVHEGLGLAVQAIPPFEFTFKDERISFTILDAVISPPTVPKGTICK 94
Query: 37 -------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGAD 89
CR + +Y GKL AD+ + ++++ G P+M+K++ C+L
Sbjct: 95 EVNIYPAECRGRRSTYRGKLTADINWAVNGISKGIIKQFL--GYVPIMVKSKLCNLHNLP 152
Query: 90 SQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVI 149
Q L+ EEA EMGGYFI+NG+E+V R +I+P++N+P++M+R ++ R GYT V +
Sbjct: 153 PQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWKTRGPGYTQYGVSV 212
Query: 150 RCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY 209
CVR++ S+V + L+YL NG+V L F + + + LP+G LKALV +D +IF L
Sbjct: 213 HCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELI--- 269
Query: 210 DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYA 269
KE + VS+ ++I++ E +T+ Q L ++GE F+ ++
Sbjct: 270 ---KGKEDDSFLRNSVSQMLRIVMEE----GCSTQKQVLNYLGECFRVKLNVPDWYPNEQ 322
Query: 270 VAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
AE + I +HL N +KF +L M +KLF+L + DNPDSL NQE+L PG L
Sbjct: 323 AAEFLFNQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMEDNPDSLVNQEVLTPGQLFL 382
Query: 330 IYLKEKL 336
++LK L
Sbjct: 383 MFLKGSL 389
>gi|407843710|gb|EKG01580.1| DNA-directed RNA polymerase III subunit, putative [Trypanosoma cruzi]
Length = 1683
Score = 322 bits (825), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 283/959 (29%), Positives = 432/959 (45%), Gaps = 144/959 (15%)
Query: 71 FGQFPVMLKTRRCHLQGADSQK-LVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMS 129
F +FP M++ RC L+G D++ EE E+GGYFI+ G ER+ RS+++ + N P++
Sbjct: 539 FSEFPEMVRGARCSLRGVDTRNDHFRAFEEQKEVGGYFIMRGGERILRSLLMQRCNVPLN 598
Query: 130 MVRSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIV 189
+ R F + ++ KAVVIRC R ++ YY G V F + + +PV ++
Sbjct: 599 IFRERFSSQGPFFSPKAVVIRCKRPSGLTIQNYFYYATTGEVVFSF-ARKVVWHIPVLLL 657
Query: 190 LKAL--VDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRL-Q 246
L +L + LE++ LT + V + L K + V L L Q
Sbjct: 658 LFSLNTRHCSSLEMYKLLTIGFTNCSSSHVARVEALLQHHHQKPYGSLVHFLDYMGVLGQ 717
Query: 247 CLQHIGE-----HFQPVIDGL---QSESYYAVAETVIRDYIFVHLNDN------------ 286
+ E HF P Q +++Y + ++R ++ HLN N
Sbjct: 718 MYRKYHETSNTFHFLPQFHSTCQGQHDAWYGL--FMLRRHVLPHLNVNEPTRDLSPTATQ 775
Query: 287 ---------------NDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIY 331
N K + +I ++++L++ D + D QEI ++
Sbjct: 776 EECANWLSPKLLQELNAKLDAMIAIVRQLYAFFDGANEHQGNDVPAYQEIFTVSQVLMGG 835
Query: 332 LKEKLEDWLRK---------GKKLIQD-----EIENNGKKFDFFNLANIKKVMEKNPSKQ 377
+ L +++ L Q E+ N L E+ +
Sbjct: 836 FEVCLNKYMKSFVYRLGSHIPSHLFQSILQLGELPGNESSGVIDQLRQYTDYCERRSINE 895
Query: 378 IGTSIETMLKTGRLATQTGLDLQ--QRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRT 435
++ +L TG L D Q +G+ V AE LNF RF R +HRG + A +R+
Sbjct: 896 PLDALHRLLITGNLTLDREEDFYCPQTSGWVVMAEHLNFYRFFEQLRCLHRGKTIAEMRS 955
Query: 436 TSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVA-SYYDSRGNIRDFSKMRTSILR 494
+ VRK E++GF+C VH+PDG CG+LNHM+ + V+ S N D T
Sbjct: 956 SEVRKYPCEAFGFICMVHSPDGADCGVLNHMSVSTFVSESVPAGSRNEEDLLARITEEFH 1015
Query: 495 VLIGVGMIPSL-PKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHL------------ 541
L G + SL +LV + P V ++G+++G + E E+V L
Sbjct: 1016 GLRNGGSLDSLVDRLVGTVP-----VWVEGKMLGYLAPEEAERVCKALLRKKALKTGSSM 1070
Query: 542 ------RRLKVSAASVIPDDLEVGYVPLSLGGAYP-GLYLFTSPPKFVRPVRNISLPSEE 594
RR V+A S++ EV YVP G P GLY+F + +RPV+ I S
Sbjct: 1071 ELSGIVRRHSVNAFSMV----EVVYVPP--GNKDPQGLYIFYDNGRMMRPVQQIESTSHG 1124
Query: 595 SQ---NIELIGPFEQVFMEIRC--PDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSD 649
+ + IG +EQ +++I D DG + E + + +LS+ + P+ +
Sbjct: 1125 DELPFPLVYIGTWEQTWLDIASVPSDLLDGLTQLNRKYEFMEQNGSNILSLTSATIPFFE 1184
Query: 650 HNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTG 709
HN SPRN++QC ++KQ+ G +Q L +R + KL+ + PQ I RT YG+D+ G
Sbjct: 1185 HNCSPRNLFQCGLSKQSAGTQLQTLAWRKEAKLFRMYCPQRYISRTLPMDYYGLDDVNLG 1244
Query: 710 TNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVD--RGQKLFR 767
NA++A+LAYTGYD++DA+ILN ++ GM I + I S G K D Q L
Sbjct: 1245 VNAVIAILAYTGYDLDDAVILNSTASQFGMLTAGITVAKVITASGKGEKDDVFVFQNLL- 1303
Query: 768 RNKDAKSLHSVIDSDGLPYVGQMIHPGEP--------------------YCS-------- 799
+ + +D+ GLP + PG YC
Sbjct: 1304 --SNGQPFTPELDAHGLPRKRAV--PGTTELLSFDSDHKYPTLRDSSAVYCCAKRYERID 1359
Query: 800 ------IYDKT----TNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPI 849
+Y+ T T W+ + KG E+ +V V V + P A + FR R P
Sbjct: 1360 PLMNKKVYEYTRHHVTKWWQFD--KG-ENAWVHSV-VPLTYDGPDPTSALVVFRIPRPPA 1415
Query: 850 IGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
IGDKFSSRHGQKG D+PFS G+ PD+IINPHAFPSRMT+ M+LE + AK
Sbjct: 1416 IGDKFSSRHGQKGTLPLHIRAYDLPFSTRDGITPDIIINPHAFPSRMTVGMVLEMMGAK 1474
>gi|22748410|gb|AAN05375.1| putative RNA polymerase [Oryza sativa Japonica Group]
Length = 264
Score = 322 bits (824), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 146/231 (63%), Positives = 189/231 (81%)
Query: 103 MGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSSVTLK 162
MGGYFI G+ER+ R +IL K+NYPM ++R SF +R GYTDKAV+IRCV+ DQSSVT+K
Sbjct: 1 MGGYFICGGMERLVRILILQKRNYPMGLIRGSFVNRGAGYTDKAVIIRCVQDDQSSVTIK 60
Query: 163 LYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGS 222
LYYLLNGS RLGFWL G+E+LLPVGIVLKAL+DT+D EIF LTCCY + Y++ KG V +
Sbjct: 61 LYYLLNGSARLGFWLGGREFLLPVGIVLKALIDTSDREIFTSLTCCYSDHYERGKGVVST 120
Query: 223 PLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVH 282
L+ ER +IIL EV+DLSL TR +CL H+G++F+ V++G + + + VAE V++DYIFVH
Sbjct: 121 QLIGERAQIILDEVRDLSLFTRTECLLHLGKYFRSVMEGFEKDDFETVAEAVLKDYIFVH 180
Query: 283 LNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLK 333
L +N+DKFNLLIFMLQKL+++VD T+ D D+LQ QE+LLPGHLIT++LK
Sbjct: 181 LQNNHDKFNLLIFMLQKLYAIVDQTASPDKADALQYQEVLLPGHLITVFLK 231
>gi|71659679|ref|XP_821560.1| RNA polymerase I second largest subunit [Trypanosoma cruzi strain CL
Brener]
gi|70886943|gb|EAN99709.1| RNA polymerase I second largest subunit, putative [Trypanosoma cruzi]
Length = 1591
Score = 320 bits (820), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 283/960 (29%), Positives = 431/960 (44%), Gaps = 144/960 (15%)
Query: 70 NFGQFPVMLKTRRCHLQGADSQK-LVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPM 128
+F +FP M++ RC L+G D++ EE E+GGYFI+ G ER+ R++++ + N P+
Sbjct: 446 SFSEFPEMVRGARCSLRGVDTRNDHFRAFEEQKEVGGYFIMRGGERILRALLMQRCNVPL 505
Query: 129 SMVRSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGI 188
++ R F + ++ KAVVIRC R ++ YY G V F + + +PV +
Sbjct: 506 NIFRERFSSQGPFFSPKAVVIRCKRPSGLTIQNYFYYATTGEVVFSF-ARKVVWHIPVLL 564
Query: 189 VLKAL--VDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRL- 245
+L +L + LE++ LT + V + L K + V L L
Sbjct: 565 LLFSLNTRHCSSLEMYKLLTIGFTNCSSSHVARVEALLQHHHQKPYGSLVHFLDYMGVLG 624
Query: 246 QCLQHIGE-----HFQPVIDGL---QSESYYAVAETVIRDYIFVHLNDN----------- 286
Q + E HF P Q + +Y + ++R ++ HLN N
Sbjct: 625 QMYRKYHETSNTFHFLPQFHSTCQGQHDVWYGL--FMLRRHVLPHLNVNEPTRDLSPTAT 682
Query: 287 ----------------NDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITI 330
N K + +I ++++L++ D + D QEI ++
Sbjct: 683 QEECVNWLSPKLLQELNAKLDAMIAIVRQLYAFFDGANEHQGNDVPAYQEIFTVSQVLMG 742
Query: 331 YLKEKLEDWLRK---------GKKLIQD-----EIENNGKKFDFFNLANIKKVMEKNPSK 376
+ L +++ L Q E+ N L E+
Sbjct: 743 GFEVCLNKYMKSFVYRLGSHIPSHLFQSILQLGELPGNESSGVINQLRQYTDYCERRSIN 802
Query: 377 QIGTSIETMLKTGRLATQTGLDLQ--QRAGYTVQAERLNFLRFISFFRAVHRGASFAGLR 434
+ ++ +L TG L D Q +G+ V AE LNF RF R +HRG + A +R
Sbjct: 803 EPLDALHRLLITGNLTLDREEDFYCPQTSGWVVMAEHLNFYRFFEQLRCLHRGKTIAEMR 862
Query: 435 TTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMT-STCRVASYYDSRGNIRDFSKMRTSIL 493
++ VRK E++GF+C VH+PDG CG+LNHM+ ST S N D T
Sbjct: 863 SSEVRKYPCEAFGFICMVHSPDGADCGVLNHMSVSTFVSESVPTGSRNEEDLLSRITEEF 922
Query: 494 RVLIGVGMIPSL-PKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHL----------- 541
L G + SL +LV + P V ++G+++G + E E+V L
Sbjct: 923 HGLRNGGSLDSLVDRLVGTVP-----VWVEGKMLGYLAPEEAERVCKALLRKKALKTGSS 977
Query: 542 -------RRLKVSAASVIPDDLEVGYVPLSLGGAYP-GLYLFTSPPKFVRPVRNISLPSE 593
RR V+A S++ EV YVP G P GLY+F + +RPV+ I S
Sbjct: 978 MELSGIVRRHSVNAFSMV----EVVYVPP--GNKDPQGLYIFYDNGRMMRPVQQIESTSH 1031
Query: 594 ESQ---NIELIGPFEQVFMEIRC--PDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYS 648
+ + IG +EQ +++I D DG + E + + +LS+ + P+
Sbjct: 1032 GDELPFPLVYIGTWEQTWLDIASVPSDLLDGLTQLNRKYEFMEQNGSNILSLTSATIPFF 1091
Query: 649 DHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPT 708
+HN SPRN++QC ++KQ+ G +Q L +R + KL+ + PQ I RT YG+D+
Sbjct: 1092 EHNCSPRNLFQCGLSKQSAGTQLQTLAWRKEAKLFRMYCPQRYISRTLPMDYYGLDDVNL 1151
Query: 709 GTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVD--RGQKLF 766
G NA++A+LAYTGYD++DA+ILN ++ GM I + I S G K D Q L
Sbjct: 1152 GVNAVIAILAYTGYDLDDAVILNSTASQFGMLTAGITVAKVITASGKGEKDDVFVFQNLL 1211
Query: 767 RRNKDAKSLHSVIDSDGLPYVGQMIHPGEP--------------------YCS------- 799
+ + +D+ GLP + PG YC
Sbjct: 1212 ---SNGQPFTPELDAHGLPRKRAV--PGTTELLSFDSDHKYPTLRDSSAVYCCAKRYERI 1266
Query: 800 -------IYDKT----TNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNP 848
+Y+ T T W+ + KG E+ +V V V +K P A + FR R
Sbjct: 1267 DPLMNKKVYEYTRHHVTKWWQFD--KG-ENAWVHSV-VPLKYDGPDPTSALVVFRIPRPT 1322
Query: 849 IIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
IGDKFSSRHGQKG D+PFS G+ PD+IINPHAFPSRMT+ M+LE + AK
Sbjct: 1323 AIGDKFSSRHGQKGTLPLHIRAYDLPFSTRDGITPDIIINPHAFPSRMTVGMVLEMMGAK 1382
>gi|353241879|emb|CCA73664.1| probable RPA135-DNA-directed RNA polymerase I, 135 KD subunit
[Piriformospora indica DSM 11827]
Length = 528
Score = 320 bits (819), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 178/415 (42%), Positives = 259/415 (62%), Gaps = 14/415 (3%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
R+ +SY G++ V + G P E + G P+M+++ RC+L+G S +L+
Sbjct: 118 ARERLVSYRGRMT--VRICWSVNGGPENNETRDCGLLPIMVRSVRCNLRGLSSAELIKRH 175
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
EE E GGYFI+NG ER+ R +ILP++N+ ++++R SF +R YT AV IR VR DQS
Sbjct: 176 EEPEEFGGYFIINGNERLIRYLILPRRNHVVALIRPSFVNRGPSYTPYAVQIRGVRADQS 235
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
SVT L+YL NGS F + +EY++P+ ++LKALV +DLEIF + + Y
Sbjct: 236 SVTNSLHYLSNGSATFRFSWRKQEYVIPIMLILKALVGASDLEIFEAVIM---QDYH--- 289
Query: 218 GAVGSPLVSERVKIILAEVQD-LSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIR 276
+ +++RV+++L ++ SL T QCL ++GE F+ V+ + S + +IR
Sbjct: 290 ----NTFLTDRVELLLRSFKNHYSLYTGAQCLDYLGEKFRVVLGQPEDMSNRELGIWLIR 345
Query: 277 DYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKL 336
+ VHL+D DKF +LIFML+KL++LV DNPDS Q+QEILLPG L + +KE+L
Sbjct: 346 KVVLVHLDDPRDKFRMLIFMLRKLYALVSGQCCPDNPDSPQHQEILLPGSLYGMIIKERL 405
Query: 337 EDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTG 396
E+ L + + I ++ DFF+ + KV++K S IG+ + L TG L + TG
Sbjct: 406 EEALNQVRNQIAQDVRREVAAVDFFDRRYVNKVLQK-VSFDIGSKMVNFLATGNLVSPTG 464
Query: 397 LDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCP 451
LDLQQ AG+T+ AE+LN+ R+IS FR VHRGA FA L+TT+VRKLLPESWG P
Sbjct: 465 LDLQQAAGFTIVAEKLNWYRYISHFRCVHRGAFFAELKTTTVRKLLPESWGMSGP 519
>gi|407404504|gb|EKF29929.1| DNA-directed RNA polymerase III subunit, putative [Trypanosoma cruzi
marinkellei]
Length = 1591
Score = 319 bits (818), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 277/959 (28%), Positives = 431/959 (44%), Gaps = 144/959 (15%)
Query: 71 FGQFPVMLKTRRCHLQGADSQK-LVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMS 129
F +FP M++ RC L+G D++ EE E+GGYFI+ G ER+ R++++ + N P++
Sbjct: 447 FSEFPEMVRGARCSLRGVDTRNDHFRAFEEQKEVGGYFIMRGGERILRALLMQRCNVPLN 506
Query: 130 MVRSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIV 189
+ R F + ++ KAVVIRC R ++ YY G V F + + +PV ++
Sbjct: 507 IFRERFSSQGPFFSPKAVVIRCKRPSGLTIQNYFYYATTGEVVFSF-ARKVVWHIPVPLL 565
Query: 190 LKAL--VDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRL-Q 246
L +L + LE++ LT + V + K V L L Q
Sbjct: 566 LFSLNTRHCSSLEMYKLLTIGFTNCSSSHVARVEALFQHHHQKPYGCLVHFLDYMGVLGQ 625
Query: 247 CLQHIGE-----HFQPVIDGL---QSESYYAVAETVIRDYIFVHLNDN------------ 286
+ E HF P Q +++Y + ++R ++ HLN N
Sbjct: 626 MYRKYHETSNTFHFLPQFHSTCQGQHDAWYGL--FMLRRHVLPHLNVNEPTRDLSPTATQ 683
Query: 287 ---------------NDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIY 331
N K + +I ++++L++ D + D QEI ++
Sbjct: 684 EECVNWLSPKLLQELNAKLDAMIAIVRQLYAFFDGVNEHQGNDVPAYQEIFTVSQVLMGG 743
Query: 332 LKEKLEDWLRK---------GKKLIQD-----EIENNGKKFDFFNLANIKKVMEKNPSKQ 377
+ L +++ L Q E+ N L + E+ +
Sbjct: 744 FEVCLNKYMKSFVYRLGSHIPSHLFQSILQLGELPGNESSGFINQLRQYTEYCERRSINE 803
Query: 378 IGTSIETMLKTGRLATQTGLDLQ--QRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRT 435
++ +L TG L D Q +G+ V AE LNF RF R +HRG + A +R+
Sbjct: 804 PLDALHRLLITGNLTLDREEDFYCPQTSGWVVMAEHLNFYRFFEQLRCLHRGKTIAEMRS 863
Query: 436 TSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRD--FSKMRTSIL 493
+ VRK E++GF+C VH+PDG CG+LNHM+ + V+ S D +++
Sbjct: 864 SEVRKYPCEAFGFICMVHSPDGADCGVLNHMSVSTFVSESVPSGSRNEDDLLARIAEEFH 923
Query: 494 RVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHL------------ 541
+ G + + +LV + P V ++G+++G + E E+V L
Sbjct: 924 GLRNGGSLDSLIDRLVGTVP-----VWVEGKMLGYLAPEEAERVGNALIRKKALKTRSNM 978
Query: 542 ------RRLKVSAASVIPDDLEVGYVPLSLGGAYP-GLYLFTSPPKFVRPVRNISLPSEE 594
RR V+A S+I EV YVP G P GLY+F + +RPV+ I S
Sbjct: 979 ELSGIVRRHSVNAFSMI----EVVYVPP--GNKDPQGLYIFYDNGRMMRPVQQIESTSRG 1032
Query: 595 SQ---NIELIGPFEQVFMEIRC--PDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSD 649
+ IG +EQ +++I D DG + E + + +LS+ + P+ +
Sbjct: 1033 EDLPFPLVYIGTWEQTWLDIASVPSDLLDGVTQLNRKYEFMEQNGSNILSLTSATIPFFE 1092
Query: 650 HNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTG 709
HN SPRN++QC ++KQ+ G +Q+L +R + KL+ + PQ I RT YG+D+ G
Sbjct: 1093 HNCSPRNLFQCGLSKQSAGTQLQSLAWRKEAKLFRMYCPQRYISRTLAMDYYGLDDVNLG 1152
Query: 710 TNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVD--RGQKLFR 767
NA++A+LAYTGYD++DA+ILN ++ GM I + I S G K D Q L
Sbjct: 1153 VNAVIAILAYTGYDLDDAVILNSTASQFGMLTAGITVAKIITASGKGEKDDVFVFQNLL- 1211
Query: 768 RNKDAKSLHSVIDSDGLPYVGQMIHPGEP--------------------YCS-------- 799
+ + +D+ GLP + PG YC
Sbjct: 1212 --SNGQPFTPELDAHGLPRKRAV--PGTTELLSFDSDHKYPTLRDSSAVYCCAKRYERID 1267
Query: 800 ------IYDKT----TNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPI 849
+Y+ T T W+ + KG E+ +V V V + P A + FR R P
Sbjct: 1268 PLMNKKVYEYTRHHVTKWWQFD--KG-ENAWVHSV-VPLTYDGPDPTSALVVFRIPRPPA 1323
Query: 850 IGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
IGDKFSSRHGQKG D+PFS G+ PD+IINPHAFPSRMT+ M+LE + AK
Sbjct: 1324 IGDKFSSRHGQKGTLPLHIRAHDLPFSTRDGITPDIIINPHAFPSRMTVGMVLEMMGAK 1382
>gi|402549534|ref|XP_001565714.2| RNA polymerase I second largest subunit, putative [Leishmania
braziliensis MHOM/BR/75/M2904]
gi|356482963|emb|CAM39212.2| RNA polymerase I second largest subunit, putative [Leishmania
braziliensis MHOM/BR/75/M2904]
Length = 1567
Score = 303 bits (775), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 263/959 (27%), Positives = 435/959 (45%), Gaps = 133/959 (13%)
Query: 66 RERF--NFGQFPVMLKTRRCHLQGADSQKLVSLK--EEAAEMGGYFILNGLERVFRSVIL 121
+E+F NF FP M+K RC L+ D+ +L + EE E+GGYFI+NG ER+ R++++
Sbjct: 415 KEQFWVNFASFPEMVKGARCALRNVDA-RLDHFRALEEQKEVGGYFIMNGGERILRALLM 473
Query: 122 PKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKE 181
+ N P+++ R F + ++ KAVVIRC R + YY G V F +
Sbjct: 474 QRCNVPINIFRERFATQGPHFSAKAVVIRCKRPSGLTAQNYFYYTTQGEVIFSF-ARKVV 532
Query: 182 YLLPVGIVLKALV--DTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKII--LAEVQ 237
+ LPV ++L A+ + +E+ LT E + V + L R K L
Sbjct: 533 WHLPVPLLLSAMSTQSVSAVELQRLLTIGMPEGSHAAR--VEALLQHHRGKPYGDLRHFT 590
Query: 238 D-LSLTTRLQCLQHIGE---HFQPVI---DGLQSESYYAVAETVIRDYIFVHLN------ 284
D +++ R+ H HF P+ Q +++Y + ++R +I HLN
Sbjct: 591 DYITVLGRMYREYHQNSSTFHFLPLYAKGSTCQHDAWYGM--FMLRRHILPHLNSCDAAT 648
Query: 285 ----------------------DNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEIL 322
+ + KF+ +I + ++L+ +D D QE+
Sbjct: 649 PDLAPGATAQMLVAWLSPALLAELDRKFDAMIAITRQLYLFIDGAVEHQGNDVPAYQELF 708
Query: 323 LPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSI 382
++ + L ++R + + +L + V ++ +Q+
Sbjct: 709 TVSQVLMGAFEVCLNRYMRGFVYRLARHLP-AALFHRILSLRTLPPVDAEDIVRQVRQFA 767
Query: 383 ETMLKTG---------RLATQTGLDLQQRAGY--------TVQAERLNFLRFISFFRAVH 425
E + G RL L+L + + V AE LNF RF R VH
Sbjct: 768 EFCGRHGGSDPLDQLRRLLVTGNLNLDREEDFYCPQTSGWVVMAEHLNFYRFFEQLRCVH 827
Query: 426 RGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDF 485
RG + A +R++ VRK E++GF+C V +PDGE CG+LNH++ ++ + ++
Sbjct: 828 RGKTIADMRSSEVRKYPCEAYGFICMVQSPDGEDCGVLNHLS----ISMISSNSPDVAMT 883
Query: 486 SKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK 545
+++R + + + V + +V V V ++G ++G + ++ K A LR+LK
Sbjct: 884 AQLREMVCKAVPNVRSRATRSSVVDQLCETV-PVWMEGELLGYLSPTDAMKAAATLRQLK 942
Query: 546 -------VSAASVIP-------DDLEVGYVPLSLGGAYP-GLYLFTSPPKFVRPVRNISL 590
V + ++ LEV YV + G P GLY+F + +RPV+ +
Sbjct: 943 ALTLRSQVHVSGIVRRKDASPLHTLEVVYV--APGSRDPAGLYVFYDCGRLMRPVQLLES 1000
Query: 591 PSEESQN-----IELIGPFEQVFMEIRC--PDGGDGGRRNAFPATHEEIHPTGMLSVVAN 643
+ IG +EQ + ++ D D + + E + T +S+ +
Sbjct: 1001 SVRTGATHLPFPLVFIGTWEQSWADVAAVPSDPLDAVVQLNRKYEYMEQNGTNFISLTSA 1060
Query: 644 LTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGI 703
P+ +HN SPRN++QC ++KQ+ G +QAL +R + KL+ PQ I RT YG+
Sbjct: 1061 TIPFFEHNCSPRNLFQCGLSKQSSGTQLQALAWRKEAKLFRTYCPQRYISRTLPMDYYGL 1120
Query: 704 DEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQ 763
D+ G NA++A+LAYTGYDM+DA+I+N ++ RGM + + + + G+ D
Sbjct: 1121 DDVNLGVNAVIAILAYTGYDMDDAVIINTTTTQRGMLTAGVTVAKIVTAAGRGSDKDDVF 1180
Query: 764 KLFRRNKDAKSLHSVIDSDGLP------------YVGQMIHPG-----EPYC-------- 798
+ + ++++GLP + +PG + YC
Sbjct: 1181 VFHNLLSTGERFTAQLEANGLPPKRVNASLEAFSFDRDHKYPGLRDNSDVYCCAKRVERV 1240
Query: 799 ------SIYDKT---TNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPI 849
SIY+ T WR + E +V V + + S P + FR R P
Sbjct: 1241 DPFTNKSIYEYTRHHATKWRHFDK--GEDAWVQQV-IPLVYSGPDPTSVLMIFRIPRPPT 1297
Query: 850 IGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
+GDKFSSRHGQKG D+PFS +G+ PD+IINPHAFPSRMT+ M+LE + AK
Sbjct: 1298 VGDKFSSRHGQKGTLPLHISSHDLPFSTTSGITPDVIINPHAFPSRMTVGMMLEIMTAK 1356
>gi|340058209|emb|CCC52563.1| putative RNA polymerase I second largest subunit [Trypanosoma vivax
Y486]
Length = 1590
Score = 299 bits (766), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 273/973 (28%), Positives = 435/973 (44%), Gaps = 170/973 (17%)
Query: 70 NFGQFPVMLKTRRCHLQGADSQ-KLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPM 128
+F +FP M+ RC L+ + S EE E+GGYFI+ G ER+ R++++ + N P+
Sbjct: 445 SFFEFPEMVMGSRCALRRVHHRYDHFSALEEQKEVGGYFIMRGGERIIRALLMQRCNVPI 504
Query: 129 SMVRSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGI 188
++ R F ++ +AVVIRC R + YY G V F + + + +
Sbjct: 505 NIQREQFSAHDSTFSSRAVVIRCKRPSGLTNQNYFYYSTTGDVVFSF-ARKVVWHISASL 563
Query: 189 VLKALVDTN--DLEIFNHLTCCYDEKYKKEKGAVGSPLVSE----RVKIILAE---VQDL 239
+L AL + +E++ LT +G P V++ RV+
Sbjct: 564 LLFALNSQHRSSIEMYKLLT-------------IGLPNVTKSHAARVEAFFQHHYAASYS 610
Query: 240 SLTTRLQCLQHIGE----------------HFQPVIDGLQSESYYAVAETVIRDYIFVHL 283
SLT L + +G F G Q +++Y + ++R ++ HL
Sbjct: 611 SLTNYLDYMAVLGRIYRQYQLSSTAFRFLPQFHFTCQG-QHDAWYGL--FMLRRHVLPHL 667
Query: 284 NDNND---------------------------KFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
N + KF+ +I +L++L+S D + D L
Sbjct: 668 NVDEPTPDLSPTATQEELTAWLSPELQRELEFKFDTIIAILRQLYSFNDGVTEHQGNDVL 727
Query: 317 QNQEILLPGHLITIYLKEKLEDWL-----RKGKKLIQDEIENNGKKFDFFN------LAN 365
QE+ ++ + L +L R G + + + K D L
Sbjct: 728 SFQEVFTVSQVLVGAFEVALNKYLKSMSFRLGSHIPPEMFRSIVKLTDKPTRETSDILQQ 787
Query: 366 IKKVMEKNPSKQIGTSIETMLK---TGRLATQTGLDL--QQRAGYTVQAERLNFLRFISF 420
I+ E + ++ +L+ TG D Q +G+ V AE LNF RF
Sbjct: 788 IRHYSEYAARRNGIEPLDPVLRLLLTGNFNLDREEDFFCPQTSGWVVIAEHLNFYRFFEQ 847
Query: 421 FRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMT-STCRVASYYDSR 479
FR +HRG + A +R++ VR+ E++GFLC VH+PDGE CG+LNH++ ST AS S
Sbjct: 848 FRCLHRGKTIAEMRSSEVRRYPCEAYGFLCMVHSPDGEDCGVLNHLSVSTILSASQPASS 907
Query: 480 GNIRDFSKMRTSILRVLIGV----GMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIE 535
R +++M+ ++ L V S+ +LV + P V ++G+VVG + E +
Sbjct: 908 ---RQWAEMQETLAVALRNVRSNASRAASVDQLVGTVP-----VWVEGKVVGYLTPMEAQ 959
Query: 536 KVVAHLRRLKV-SAASVIP-------------DDLEVGYVPLSLGGAYPGLYLFTSPPKF 581
+ A LR K+ + SV+ + +EV YVP PGLY+F +
Sbjct: 960 QTAAALRLKKIIKSRSVVGVTGIVRRHDVSALNTVEVVYVPPE-NKDPPGLYIFYEHGRL 1018
Query: 582 VRPVRNISLPSEESQ---NIELIGPFEQVFMEIRCPDGGDGGRRNA---FPATHEEIHPT 635
+RPV+ I S + I +G +EQ + +I G NA +E +
Sbjct: 1019 MRPVQQIESSSRGTDLPFPIVYLGTWEQTWQDI---AGVPSDLLNAVMQLNRKYEYMEQN 1075
Query: 636 G--MLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIV 693
G +LS+ ++ P+ +HN SPRN++QC ++KQ+ G +Q++ +R + KL+ + PQ I
Sbjct: 1076 GYNILSLTSSTIPFFEHNCSPRNLFQCGLSKQSAGTQLQSMAWRKEAKLFRMYFPQRYIS 1135
Query: 694 RTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLS 753
RT Y +D+ G NA++A+LAYTGYD++DA+I+N +S GM + I + +
Sbjct: 1136 RTLPMDYYNLDDVNLGVNAVIAILAYTGYDLDDAVIINSTSTQFGMLNAGITVAKVVTAK 1195
Query: 754 DDGNKVDRGQKLFRRN-KDAKSLHSVIDSDGLPYVGQMIHPGEP---------------- 796
G K D +F+ + +D+ GLP + + PG
Sbjct: 1196 GKGEKDD--VFVFQNQLPSGQPFTPELDAHGLPR--KRLEPGSSKFFSFDSDHQCPALRE 1251
Query: 797 ----YCSI-----YDKTTNS------------WRTNSRKGSESVFVDYVAVDMKNSKNLP 835
YC D TN WR + KG ++ + + P
Sbjct: 1252 SSAVYCCAKRFEHVDPLTNEKVYEYARHHVTRWR-HFDKGEDAWVHSVIPLAFDGPD--P 1308
Query: 836 QKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSR 895
+ FR R P++GDKFSSRHGQKG D+PFS G+ PD+IINPHAFPSR
Sbjct: 1309 TSVLLVFRIPRPPLVGDKFSSRHGQKGTLPLHIRSHDLPFSTHDGITPDVIINPHAFPSR 1368
Query: 896 MTIAMLLESVAAK 908
MT+ M+LE + AK
Sbjct: 1369 MTVGMVLEMMGAK 1381
>gi|452820803|gb|EME27841.1| DNA-directed RNA polymerase subunit [Galdieria sulphuraria]
Length = 1158
Score = 297 bits (761), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 270/987 (27%), Positives = 426/987 (43%), Gaps = 151/987 (15%)
Query: 9 FEPLRELVRHHIESFDYMLDEGLSEMF--------------------------------- 35
F LR LV+ HIESF++++++ LS++
Sbjct: 52 FLKLRGLVKQHIESFNFLIEKELSKIVAANDKVTCDADQSFYLRYLGIRVGTPSIEEDLV 111
Query: 36 ------DHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGAD 89
CR ++Y + DV +Y ++R+ G+ P+ML++ C L G
Sbjct: 112 ISKVTPQECRLRDLTYAAPIYVDV--RYTRGKEVLIRKDVAIGRIPIMLRSSHCILTGKK 169
Query: 90 SQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVI 149
+L SL E + GGYFI+ G ERV +++ +Q ++ D++ Y
Sbjct: 170 DGQLASLGECPLDPGGYFIIRGTERV---ILIQEQLSKNRIIIEE--DKKGNYCATVTSS 224
Query: 150 RCVRKDQSSVTLKL--YYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTC 207
RK ++S+ K YL + S+ +P+ IV KAL +D EI L
Sbjct: 225 THERKSRTSLVYKSNNIYLRHNSLVDD---------IPIWIVFKALEVESDQEIV-QLIG 274
Query: 208 CYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQ---- 263
+E+Y+ L++ + + I VQ+ R + L++IG + G
Sbjct: 275 LIEEEYRSYYF-----LLNHKKECISRHVQN-----RNEALEYIGSRVRLFRKGYSFRRS 324
Query: 264 -SESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEIL 322
E V VI +I + ++ +K L FM+++L ++ ++ + D+ D N+ +
Sbjct: 325 TIEEAQEVLAGVILSHIPTYQHNFRNKSIYLAFMVRRLLTVAENLTTVDDKDYYGNKRLE 384
Query: 323 LPGHLITIYLKEKLEDW---LRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIG 379
L G L+++ ++ + + L++ ++ + N +FD I K M + I
Sbjct: 385 LAGQLLSLLFEDLFKKFNADLKRHADMVLSK-PNRAAQFD------IVKCMRPD---TIS 434
Query: 380 TSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-V 438
+E + TG + RAG T RL+++ + + + F R S
Sbjct: 435 VGLENAIGTGNWTVKRFR--MHRAGITQVLSRLSYIAALGMMTRI--TSQFEKTRKISGP 490
Query: 439 RKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIG 498
R L WG LCP TP+GE CGL+ ++ T + + + IR L ++G
Sbjct: 491 RSLQGSQWGLLCPSDTPEGESCGLVKNLALTAHITTDAEEEPLIR---------LCYILG 541
Query: 499 VGMIPSLPKLVKSGPPAVLSVLLDGRVVGV-IPSSEIEKVVAHLRRLKVSAASVIPDDLE 557
V +L + P+ + L+G+ +G+ +S + LRR
Sbjct: 542 VED-ATLFSGDELNNPSHFRIFLNGKFLGIHRNASYFANIFRFLRRKGAIGE-------- 592
Query: 558 VGYVPLSLGGAYPGLYLFTSPPKFVRP----------VRNISLPSEESQNIELIGPFEQV 607
+V + + A +YL + RP V + E +E +Q
Sbjct: 593 --FVSIFVNEAENVVYLSCDSGRICRPLIIVENGKPKVTQQYIEQLERNQLEFTDLVQQG 650
Query: 608 FMEIRCPDGGDGG-----RRNAFPA--THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQC 660
+E + + N P TH EI P +L V A + PY HNQSPRN YQC
Sbjct: 651 LVEYLDVNEENNALIALSEENIEPCSTTHLEISPLAILGVCAGVIPYPHHNQSPRNTYQC 710
Query: 661 QMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYT 720
M KQ +GF R D LY L Q P+V T T + DE P G NAIVAV++Y+
Sbjct: 711 AMGKQAIGFIGYNQHLRTDTLLYLLTYAQKPLVNTKTISFIKYDELPGGQNAIVAVMSYS 770
Query: 721 GYDMEDAMILNKSSVDRGMCHGQIYQTETIDL----SDDGNKVDRGQKLFRRNKDAKSLH 776
GYD+EDA+ILN+SS+DRG + + L + ++V R ++
Sbjct: 771 GYDIEDALILNRSSLDRGYGRCCVVRKHAFGLRRYPNGTCDRVCRPPSFSESSERTHMKF 830
Query: 777 SVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSR---------------KGSESVFV 821
+ ++ DGLP VG + PG+ Y S+ KG + +
Sbjct: 831 ACLEEDGLPKVGGRLSPGQAYVYKETPMDTMTTMTSQQSIQQVGYRPQPFFYKGPDDAVI 890
Query: 822 DYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGM 881
D V V S + K I R TR P +GDKFSSRHGQKGVC + P DMPF+ G+
Sbjct: 891 DRVVVTSNASTHALIKVMI--RETRTPEVGDKFSSRHGQKGVCGLIVPQEDMPFNE-QGI 947
Query: 882 RPDLIINPHAFPSRMTIAMLLESVAAK 908
PD+I+NPH FPSRMT+ LLE +A K
Sbjct: 948 CPDIIMNPHGFPSRMTVGKLLELMAGK 974
>gi|19913065|emb|CAD26832.1| RNA polymerase I second largest subunit [Trypanosoma brucei brucei]
Length = 1596
Score = 296 bits (758), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 271/969 (27%), Positives = 418/969 (43%), Gaps = 160/969 (16%)
Query: 69 FNFGQFPVMLKTRRCHLQGADSQKLVSLK--EEAAEMGGYFILNGLERVFRSVILPKQNY 126
+ G+ P M+ RC L+G + Q+L + EE E+GGYF+L G ER+ R++IL + N
Sbjct: 450 LSLGELPEMVLGARCALRGVN-QRLDHFRALEEQKEVGGYFVLRGGERILRNLILQRCNV 508
Query: 127 PMSMVRSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPV 186
P+++ R F ++ +AV+IRC R +V YY G V F + + +P
Sbjct: 509 PLNIERERFATVDSFFSPRAVIIRCKRPSGLTVQNYFYYATKGEVIFTF-ARRVVWNIPA 567
Query: 187 GIVLKALVDTN--DLEIFNHLTCCYDEKYKKEKGAVGSPLVSER---------------- 228
+VL AL + L+I+ LT V + L
Sbjct: 568 LLVLSALNTRHRTSLDIYKLLTIGLTNGRSPHAARVEALLQHHSQMPYSTLDNFLDYLAV 627
Query: 229 VKIILAEVQDLSLTTRLQ-------CLQH--------IGEHFQPVIDGLQSESYYAVAET 273
V ++ + S R QH + H P ++ ++ S T
Sbjct: 628 VGLMYRRYHESSFIFRFLPQYHTSFATQHDAWYGLFMLRRHMLPHLNTAEATSDLPPTAT 687
Query: 274 V--IRDYIFVHLNDN-NDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHL--- 327
IR+++ L + KF+ LI +L++L D + + D L QE+ +
Sbjct: 688 SREIREWLSAGLQEELAAKFDALIGILRQLLVFNDGATGNQGNDVLAYQEVFTVSQVLIG 747
Query: 328 ------------ITIYLKEKLE-DWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNP 374
+T + +L + + L + + + N P
Sbjct: 748 AFEVSLMKTMGAVTFRMAGQLSPEIFQATMCLAETPVREAANTLEKLNQLLEYSCRNNGP 807
Query: 375 SKQIGTSIETMLKTGRLATQTGLDLQ--QRAGYTVQAERLNFLRFISFFRAVHRGASFAG 432
I ++ +L TG A D Q AG+ V E LNF R VHRG S A
Sbjct: 808 DPLI--TLNRLLLTGNFALDREEDFYSPQTAGWAVMTEHLNFYRSFEQLMCVHRGKSIAE 865
Query: 433 LRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMT-STCRVASYYDSRGNIRDF-SKMRT 490
+R++ VR+ E++GF+C VH+PDGE CG+LNH++ ST AS + + +
Sbjct: 866 MRSSDVRRYPCEAYGFICMVHSPDGEDCGVLNHLSISTVLSASPRVGSSQYKILLAFIEE 925
Query: 491 SILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEI---EKVVAHLRRLK-- 545
+ V +I + +LV + P V L+GR++G + +E K + + L+
Sbjct: 926 ELKNVRNTTSLISCVDQLVGTVP-----VWLEGRLLGYLSPNEALSASKALTQKKALRSR 980
Query: 546 --VSAASVIPDD-------LEVGYVPLSLGGAYP-GLYLFTSPPKFVRPVRNISLPSEES 595
V ++ D +EV Y+P G P GLY+F + +RPV I PS
Sbjct: 981 GVVGVTGIVRRDSISSLNTMEVVYIPP--GSKDPMGLYIFYQYGRLMRPVLQIESPSRGG 1038
Query: 596 Q---NIELIGPFEQVFMEIRCP-----DGGDGGRRNAFPATHEEIHPTG--MLSVVANLT 645
+ +G +EQ + +I DG D RR +E + G +LS ++
Sbjct: 1039 DLPFPVVYLGTWEQSWRDIAAVPSDLFDGFDQLRRK-----YEFMEQNGFNILSFTSSTI 1093
Query: 646 PYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDE 705
P+ +HN SPRN++QC ++KQT G +Q +R D KL+ + PQ I RT +G+D+
Sbjct: 1094 PFFEHNCSPRNLFQCGLSKQTAGTQLQTQAWRRDAKLFRMYYPQRYISRTLPMDYFGLDD 1153
Query: 706 YPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKL 765
G NA+VA+LAYTGYD++DAMILN ++ GM + + + + S G+
Sbjct: 1154 VSLGVNAVVAILAYTGYDLDDAMILNSTAKQFGMLNAGVTVAKIVKASGKGD-------- 1205
Query: 766 FRRNKDAKSLHSVIDSDGLPYVGQMIHPGEP----------------------------- 796
+ D H+ + DG P+ ++ G P
Sbjct: 1206 ---SNDVFVFHNCL-PDGQPFTPELDRHGLPKKRAVPNATAYFSFDTDHKYPSLRDSSAV 1261
Query: 797 YCSI-----YDKTTNS------------WRTNSRKGSESVFVDYVAVDMKNSKNLPQKAN 839
YC D TN WR + E +V V + + P
Sbjct: 1262 YCCAKRFEYIDPLTNEKTYEYTRHQITKWRHFDK--GEDAWVHSV-IPLTYDGPDPTSVL 1318
Query: 840 IRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIA 899
+ FR R P+IGDKFSSRHGQKG D+PFS G+ PD+IINPHAFPSRMT+
Sbjct: 1319 VLFRIPRPPVIGDKFSSRHGQKGTLPLDIRSHDLPFSTRDGITPDIIINPHAFPSRMTVG 1378
Query: 900 MLLESVAAK 908
M+LE + AK
Sbjct: 1379 MVLEMMGAK 1387
>gi|71754481|ref|XP_828155.1| RNA polymerase I second largest subunit [Trypanosoma brucei TREU927]
gi|70833541|gb|EAN79043.1| RNA polymerase I second largest subunit [Trypanosoma brucei brucei
strain 927/4 GUTat10.1]
Length = 1596
Score = 296 bits (757), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 272/980 (27%), Positives = 420/980 (42%), Gaps = 182/980 (18%)
Query: 69 FNFGQFPVMLKTRRCHLQGADSQKLVSLK--EEAAEMGGYFILNGLERVFRSVILPKQNY 126
+ G+ P M+ RC L+G + Q+L + EE E+GGYF+L G ER+ R++IL + N
Sbjct: 450 LSLGELPEMVLGARCALRGVN-QRLDHFRALEEQKEVGGYFVLRGGERILRNLILQRCNV 508
Query: 127 PMSMVRSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPV 186
P+++ R F ++ +AV+IRC R +V YY G V F + + +P
Sbjct: 509 PLNIERERFATVDSFFSPRAVIIRCKRPSGLTVQNYFYYATKGEVIFTF-ARRVVWNIPA 567
Query: 187 GIVLKALVDTN--DLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTR 244
+VL AL + L+I+ LT G + RV+ +L + +T
Sbjct: 568 LLVLSALNTRHRTSLDIYKLLTIGLTN---------GRSPHAARVEALLQHHSQMPYSTL 618
Query: 245 LQCLQHIGE---------------HFQPVID---GLQSESYYAVAETVIRDYIFVHLNDN 286
L ++ F P Q +++Y + ++R ++ HLN
Sbjct: 619 DNFLDYLAVVGLMYRRYHESSFIFRFLPQYHTSFATQHDAWYGL--FMLRRHMLPHLNTA 676
Query: 287 N---------------------------DKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQ 319
KF+ LI +L++L D + + D L Q
Sbjct: 677 EATPDLPPTATSREIREWLSTGLQEELAAKFDALIGILRQLLVFNDGATGNQGNDVLAYQ 736
Query: 320 EILLPGHL---------------ITIYLKEKLE-DWLRKGKKLIQDEIENNGKKFDFFNL 363
E+ + +T + +L + + L + I + N
Sbjct: 737 EVFTVSQVLIGAFEVSLMKTMGAVTFRMAGQLSPEIFQATMCLAETPIREAANTLEKLNQ 796
Query: 364 ANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQ--QRAGYTVQAERLNFLRFISFF 421
P I ++ +L TG A D Q AG+ V E LNF R
Sbjct: 797 LLEYSCRNNGPDPLI--TLNRLLLTGNFALDREEDFYSPQTAGWAVMTEHLNFYRSFEQL 854
Query: 422 RAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMT-STCRVASYYDSRG 480
VHRG S A +R++ VR+ E++GF+C VH+PDGE CG+LNH++ ST AS
Sbjct: 855 MCVHRGKSIAEMRSSDVRRYPCEAYGFICMVHSPDGEDCGVLNHLSISTVLSASPRVGSS 914
Query: 481 NIRD-FSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSE---IEK 536
+ + + + V +I + +LV + P V L+GR++G + +E K
Sbjct: 915 QYKILLAFIEEELKNVRNTTSLISCVDQLVGTVP-----VWLEGRLLGYLSPNEALSASK 969
Query: 537 VVAHLRRLK----VSAASVIPDD-------LEVGYVPLSLGGAYP-GLYLFTSPPKFVRP 584
+ + L+ V ++ D +EV Y+P G P GLY+F + +RP
Sbjct: 970 ALTQKKALRSRGVVGVTGIVRRDSISSLNTMEVVYIP--PGSKDPMGLYIFYQYGRLMRP 1027
Query: 585 VRNISLPSEESQ---NIELIGPFEQVFMEIRCP-----DGGDGGRRNAFPATHEEIHPTG 636
V I PS + +G +EQ + +I DG D RR +E + G
Sbjct: 1028 VLQIESPSRGGDLPFPVVYLGTWEQSWRDIAAVPSDLFDGFDQLRRK-----YEFMEQNG 1082
Query: 637 --MLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVR 694
+LS ++ P+ +HN SPRN++QC ++KQT G +Q +R D KL+ + PQ I R
Sbjct: 1083 FNILSFTSSTIPFFEHNCSPRNLFQCGLSKQTAGTQLQTQAWRRDAKLFRMYYPQRYISR 1142
Query: 695 TNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSD 754
T +G+D+ G NA+VA+LAYTGYD++DAMILN ++ GM + + + + S
Sbjct: 1143 TLPMDYFGLDDVSLGVNAVVAILAYTGYDLDDAMILNSTAKQFGMLNAGVTVAKIVKASG 1202
Query: 755 DGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEP------------------ 796
G+ + D H+ + DG P+ ++ G P
Sbjct: 1203 KGD-----------SNDVFVFHNCL-PDGQPFTPELDRHGLPKKRAVPNATAYFSFDTDH 1250
Query: 797 -----------YCSI-----YDKTTNS------------WRTNSRKGSESVFVDYVAVDM 828
YC D TN WR + E +V V + +
Sbjct: 1251 KYPSLRDSSAVYCCAKRFEYIDPLTNEKTYEYTRHQITKWRHFDK--GEDAWVHSV-IPL 1307
Query: 829 KNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIIN 888
P + FR R P+IGDKFSSRHGQKG D+PFS G+ PD+IIN
Sbjct: 1308 TYDGPDPTSVLVLFRIPRPPVIGDKFSSRHGQKGTLPLDIRSHDLPFSTRDGITPDIIIN 1367
Query: 889 PHAFPSRMTIAMLLESVAAK 908
PHAFPSRMT+ M+LE + AK
Sbjct: 1368 PHAFPSRMTVGMVLEMMGAK 1387
>gi|261333952|emb|CBH16946.1| RNA polymerase I second largest subunit,putative [Trypanosoma brucei
gambiense DAL972]
Length = 1545
Score = 295 bits (755), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 271/980 (27%), Positives = 420/980 (42%), Gaps = 182/980 (18%)
Query: 69 FNFGQFPVMLKTRRCHLQGADSQKLVSLK--EEAAEMGGYFILNGLERVFRSVILPKQNY 126
+ G+ P M+ RC L+G + Q+L + EE E+GGYF+L G ER+ R++IL + N
Sbjct: 399 LSLGELPEMVLGARCALRGVN-QRLDHFRALEEQKEVGGYFVLRGGERILRNLILQRCNV 457
Query: 127 PMSMVRSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPV 186
P+++ R F ++ +AV+IRC R +V YY G V F + + +P
Sbjct: 458 PLNIERERFATVDSFFSPRAVIIRCKRPSGLTVQNYFYYATKGEVIFTF-ARRVVWNIPA 516
Query: 187 GIVLKALVDTN--DLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTR 244
+VL AL + L+I+ LT G + RV+ +L + +T
Sbjct: 517 LLVLSALNTRHRTSLDIYKLLTIGLTN---------GRSPHAARVEALLQHHSQMPYSTL 567
Query: 245 LQCLQHIGE---------------HFQPVID---GLQSESYYAVAETVIRDYIFVHLNDN 286
L ++ F P Q +++Y + ++R ++ HLN
Sbjct: 568 DNFLDYLAVVGLMYRRYHESSFIFRFLPQYHTSFATQHDAWYGL--FMLRRHMLPHLNTA 625
Query: 287 N---------------------------DKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQ 319
KF+ LI +L++L D + + D L Q
Sbjct: 626 EATPDLPPTATSREIREWLSTGLQEELAAKFDALIGILRQLLVFNDGATGNQGNDVLAYQ 685
Query: 320 EILLPGHL---------------ITIYLKEKLE-DWLRKGKKLIQDEIENNGKKFDFFNL 363
E+ + +T + +L + + L + + + N
Sbjct: 686 EVFTVSQVLIGAFEVSLMKTMGAVTFRMAGQLSPEIFQATMCLAETPVREAANTLEKLNQ 745
Query: 364 ANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQ--QRAGYTVQAERLNFLRFISFF 421
P I ++ +L TG A D Q AG+ V E LNF R
Sbjct: 746 LLEYSCRNNGPDPLI--TLNRLLLTGNFALDREEDFYSPQTAGWAVMTEHLNFYRSFEQL 803
Query: 422 RAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMT-STCRVASYYDSRG 480
VHRG S A +R++ VR+ E++GF+C VH+PDGE CG+LNH++ ST AS
Sbjct: 804 MCVHRGKSIAEMRSSDVRRYPCEAYGFICMVHSPDGEDCGVLNHLSISTVLSASPRVGSS 863
Query: 481 NIRD-FSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSE---IEK 536
+ + + + V +I + +LV + P V L+GR++G + +E K
Sbjct: 864 QYKILLAFIEEELKNVRNTTSLISCVDQLVGTVP-----VWLEGRLLGYLSPNEALSASK 918
Query: 537 VVAHLRRLK----VSAASVIPDD-------LEVGYVPLSLGGAYP-GLYLFTSPPKFVRP 584
+ + L+ V ++ D +EV Y+P G P GLY+F + +RP
Sbjct: 919 ALTQKKALRSRGVVGVTGIVRRDSISSLNTMEVVYIP--PGSKDPMGLYIFYQYGRLMRP 976
Query: 585 VRNISLPSEESQ---NIELIGPFEQVFMEIRCP-----DGGDGGRRNAFPATHEEIHPTG 636
V I PS + +G +EQ + +I DG D RR +E + G
Sbjct: 977 VLQIESPSRGGDLPFPVVYLGTWEQSWRDIAAVPSDLFDGFDQLRRK-----YEFMEQNG 1031
Query: 637 --MLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVR 694
+LS ++ P+ +HN SPRN++QC ++KQT G +Q +R D KL+ + PQ I R
Sbjct: 1032 FNILSFTSSTIPFFEHNCSPRNLFQCGLSKQTAGTQLQTQAWRRDAKLFRMYYPQRYISR 1091
Query: 695 TNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSD 754
T +G+D+ G NA+VA+LAYTGYD++DAMILN ++ GM + + + + S
Sbjct: 1092 TLPMDYFGLDDVSLGVNAVVAILAYTGYDLDDAMILNSTAKQFGMLNAGVTVAKIVKASG 1151
Query: 755 DGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEP------------------ 796
G+ + D H+ + DG P+ ++ G P
Sbjct: 1152 KGD-----------SNDVFVFHNCL-PDGQPFTPELDRHGLPKKRAVPNATAYFSFDTDH 1199
Query: 797 -----------YCSI-----YDKTTNS------------WRTNSRKGSESVFVDYVAVDM 828
YC D TN WR + E +V V + +
Sbjct: 1200 KYPSLRDSSAVYCCAKRFEYIDPLTNEKTYEYTRHQITKWRHFDK--GEDAWVHSV-IPL 1256
Query: 829 KNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIIN 888
P + FR R P+IGDKFSSRHGQKG D+PFS G+ PD+IIN
Sbjct: 1257 TYDGPDPTSVLVLFRIPRPPVIGDKFSSRHGQKGTLPLDIRSHDLPFSTRDGITPDIIIN 1316
Query: 889 PHAFPSRMTIAMLLESVAAK 908
PHAFPSRMT+ M+LE + AK
Sbjct: 1317 PHAFPSRMTVGMVLEMMGAK 1336
>gi|355712704|gb|AES04438.1| polymerase I polypeptide B, 128kDa [Mustela putorius furo]
Length = 496
Score = 293 bits (750), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 146/283 (51%), Positives = 188/283 (66%), Gaps = 3/283 (1%)
Query: 627 ATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQ 686
TH+E+ P +LSV+AN P+SDHNQSPRNMYQCQM KQTMGF + + R+D KLY LQ
Sbjct: 18 TTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQARSDNKLYRLQ 77
Query: 687 TPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQ 746
TPQ+P+VR Y Y +D YP GTNAIVAV++YTGYDMEDAMI+NK+S +RG HG +Y+
Sbjct: 78 TPQSPLVRPYMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYK 137
Query: 747 TETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTN 806
+E IDLS+ + D + D + L +D DGLP++G + G+PY + T
Sbjct: 138 SEFIDLSEKIKQGDDSLVFGVKPGDPRILQK-LDDDGLPFIGAQLQYGDPYYGYLNLNTG 196
Query: 807 SWRTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHTRNPIIGDKFSSRHGQKGVCS 865
K E+ VD + V ++ N K I R RNP IGDKF+SRHGQKG+ S
Sbjct: 197 ESFVMYYKSKENCIVDNIKVCSNDTGNGKFKCICITMRVPRNPTIGDKFASRHGQKGILS 256
Query: 866 QLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
+LWP DMPF+ +GM PD++ NPH FPSRMTI ML+ES+A K
Sbjct: 257 RLWPVEDMPFT-ESGMVPDILFNPHGFPSRMTIGMLIESMAGK 298
>gi|358366889|dbj|GAA83509.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Aspergillus
kawachii IFO 4308]
Length = 1233
Score = 293 bits (750), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 267/923 (28%), Positives = 410/923 (44%), Gaps = 121/923 (13%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR +Y + D F+Y+ V+R+ G+ PVML++ +C L ++ L
Sbjct: 192 CRLRDTTYAAPIQVD--FEYVRGRQRVMRKGVAIGRMPVMLRSSKCVLANKTPAEMTVLN 249
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
E + GGYFI+NG E+V IL ++ + + ++E RK +S
Sbjct: 250 ECPLDPGGYFIVNGTEKV----ILVQEQLSKNRIIVETDPKKEIVQASVTSSSNERKSKS 305
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
+ LK L V+ + +P+ I+LKA+ D E+ L D+ Y+
Sbjct: 306 YIVLKKDKLY---VKHNVLSED----IPIVILLKAMGIHTDKEML-LLVAGVDKVYQ--- 354
Query: 218 GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESY--YAVAETV- 274
E I E L + T+ Q L IG + I+ QS SY V E V
Sbjct: 355 ---------EDFAINFEEAIKLGIYTQQQALDWIGARIK--INRKQSPSYRRTHVQEAVE 403
Query: 275 -IRDYIFVHLNDNNDKFN----LLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
I I H+ N F + M +++ + S+ D+ D L N+ + L G L+
Sbjct: 404 AIASVIISHIEVKNMNFRPKAVYVAHMARRVLMAKNDASLVDDRDYLGNKRLELAGQLLA 463
Query: 330 IYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIET---ML 386
+ ++ + + K I D++ N + + F+ ++ + + ++ + +I T L
Sbjct: 464 LLFEDLFKKFCFDIKMNI-DKVLNKRNRAEAFDAYSVITMHSNHITQGMNRAISTGNWSL 522
Query: 387 KTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLLPES 445
K R+ +RAG T RL+++ + + + F R S R L P
Sbjct: 523 KRFRM---------ERAGVTHVLSRLSYIAALGMMTRI--SSQFEKTRKVSGPRALQPSQ 571
Query: 446 WGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDF------SKMRTSILRVLIGV 499
+G LCP TP+GE CGL+ ++ + + D G IR+ ++T + L G
Sbjct: 572 FGMLCPADTPEGEACGLVKNLALMTHITTN-DEEGPIRNLIFMLGAEDIQTVGGKELYGP 630
Query: 500 GM----IPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDD 555
G I P + P L R +G I S + + H +R A V DD
Sbjct: 631 GCYTISINGTPTALTRRPKYFLDAFRRLRRMGRI-SEFVSIYINHHQR----AVHVATDD 685
Query: 556 LEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEE-------------SQNIELIG 602
G + L G + + + +RN ++ ++ +N LI
Sbjct: 686 ---GRICRPLIVVENGKSRVNA--QHLEKLRNGTMQFDDFLAQGLVEYLDVNEENDSLIS 740
Query: 603 PFEQVFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQM 662
+E+ E TH EI P +L VA L PY HNQSPRN YQC M
Sbjct: 741 IYEKDITET---------------TTHLEIEPFTVLGAVAGLIPYPHHNQSPRNTYQCAM 785
Query: 663 AKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGY 722
KQ +G R D LY + PQ P+V++ T D+ P G NAIVAV++Y+GY
Sbjct: 786 GKQAIGAIASNQFLRIDSILYLMVYPQKPMVKSRTIELTKYDQLPAGQNAIVAVMSYSGY 845
Query: 723 DMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKV-DRGQKLFRRNKDAKSLHSVIDS 781
D+EDA++LNK SVDRG Q+++ +L N DR N H++++S
Sbjct: 846 DIEDALVLNKGSVDRGFGRCQVFRKYVTNLKSYSNGTKDRLSGPTYENDAPIRKHALLES 905
Query: 782 DGLPYVGQMIHPGEPYC--SIYDKTTNSWRTNSRKGS--------------ESVFVDYVA 825
DGL VG+ ++ GE Y S D++ +S NS G + ++D V
Sbjct: 906 DGLAAVGEQVNAGEVYINKSTPDQSMSSGFPNSDAGRPVSYMPTPMTYKLPDPAYIDKVM 965
Query: 826 VDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDL 885
V + ++N Q + R TR P +GDKFSSRHGQKGV + DMPF+ TG+ PD+
Sbjct: 966 VSVTENEN--QLVKVLTRQTRRPEVGDKFSSRHGQKGVVGIIADQADMPFTD-TGINPDI 1022
Query: 886 IINPHAFPSRMTIAMLLESVAAK 908
I+NPH FPSRMT+ +LE VA K
Sbjct: 1023 IMNPHGFPSRMTVGKMLELVAGK 1045
>gi|350638131|gb|EHA26487.1| hypothetical protein ASPNIDRAFT_171679 [Aspergillus niger ATCC 1015]
Length = 1201
Score = 293 bits (749), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 266/923 (28%), Positives = 410/923 (44%), Gaps = 121/923 (13%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR +Y + D F+Y+ V+R+ G+ PVML++ +C L ++ L
Sbjct: 160 CRLRDTTYAAPIQVD--FEYVRGRQRVMRKGVAIGRMPVMLRSSKCVLANKTPAEMTVLN 217
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
E + GGYFI+NG E+V IL ++ + + ++E RK +S
Sbjct: 218 ECPLDPGGYFIVNGTEKV----ILVQEQLSKNRIIVETDPKKEIVQASVTSSSNERKSKS 273
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
+ LK L V+ + +P+ I+LKA+ D E+ L D+ Y+
Sbjct: 274 YIVLKKDKLY---VKHNVLSED----IPIVILLKAMGIHTDKEML-LLVAGVDKVYQ--- 322
Query: 218 GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESY--YAVAETV- 274
E I E L + T+ Q L IG + I+ QS SY V E V
Sbjct: 323 ---------EDFAINFEEAIKLGIYTQQQALDWIGARIK--INRKQSPSYRRTHVQEAVE 371
Query: 275 -IRDYIFVHLNDNNDKFN----LLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
I I H+ N F + M +++ + S+ D+ D L N+ + L G L+
Sbjct: 372 AIASVIISHIEVKNMNFRPKAVYVAHMARRVLMAKNDASLVDDRDYLGNKRLELAGQLLA 431
Query: 330 IYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIET---ML 386
+ ++ + + K I D++ N + + F+ ++ + + ++ + +I T L
Sbjct: 432 LLFEDLFKKFCFDIKMNI-DKVLNKRNRAEAFDAYSVITMHSNHITQGMNRAISTGNWSL 490
Query: 387 KTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLLPES 445
K R+ +RAG T RL+++ + + + F R S R L P
Sbjct: 491 KRFRM---------ERAGVTHVLSRLSYIAALGMMTRI--SSQFEKTRKVSGPRALQPSQ 539
Query: 446 WGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDF------SKMRTSILRVLIGV 499
+G LCP TP+GE CGL+ ++ + + D G +R+ ++T + L G
Sbjct: 540 FGMLCPADTPEGEACGLVKNLALMTHITTN-DEEGPVRNLIFMLGAEDIQTVGGKELYGP 598
Query: 500 GM----IPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDD 555
G I P + P L R +G I S + + H +R A V DD
Sbjct: 599 GCYTISINGTPTALTRRPKYFLDAFRRLRRMGRI-SEFVSIYINHHQR----AVHVATDD 653
Query: 556 LEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEE-------------SQNIELIG 602
G + L G + + + +RN ++ ++ +N LI
Sbjct: 654 ---GRICRPLIVVENGKSRVNA--QHLEKLRNGTMQFDDFLAQGLVEYLDVNEENDSLIS 708
Query: 603 PFEQVFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQM 662
+E+ E TH EI P +L VA L PY HNQSPRN YQC M
Sbjct: 709 IYEKDITET---------------TTHLEIEPFTVLGAVAGLIPYPHHNQSPRNTYQCAM 753
Query: 663 AKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGY 722
KQ +G R D LY + PQ P+V++ T D+ P G NAIVAV++Y+GY
Sbjct: 754 GKQAIGAIASNQFLRIDSILYLMVYPQKPMVKSRTIELTKYDQLPAGQNAIVAVMSYSGY 813
Query: 723 DMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKV-DRGQKLFRRNKDAKSLHSVIDS 781
D+EDA++LNK SVDRG Q+++ +L N DR N H++++S
Sbjct: 814 DIEDALVLNKGSVDRGFGRCQVFRKYVTNLKSYSNGTKDRLSGPTYENDAPIRKHALLES 873
Query: 782 DGLPYVGQMIHPGEPYC--SIYDKTTNSWRTNSRKGS--------------ESVFVDYVA 825
DGL VG+ ++ GE Y S D++ +S NS G + ++D V
Sbjct: 874 DGLAAVGEQVNAGEVYINKSTPDQSMSSGFPNSDAGRPVSYMPTPMTYKLPDPAYIDKVM 933
Query: 826 VDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDL 885
V + ++N Q + R TR P +GDKFSSRHGQKGV + DMPF+ TG+ PD+
Sbjct: 934 VSVTENEN--QLVKVLTRQTRRPEVGDKFSSRHGQKGVVGIIADQADMPFTD-TGINPDI 990
Query: 886 IINPHAFPSRMTIAMLLESVAAK 908
I+NPH FPSRMT+ +LE VA K
Sbjct: 991 IMNPHGFPSRMTVGKMLELVAGK 1013
>gi|317025401|ref|XP_001388998.2| DNA-directed RNA polymerase III subunit RET1 [Aspergillus niger CBS
513.88]
Length = 1226
Score = 293 bits (749), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 266/923 (28%), Positives = 410/923 (44%), Gaps = 121/923 (13%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR +Y + D F+Y+ V+R+ G+ PVML++ +C L ++ L
Sbjct: 185 CRLRDTTYAAPIQVD--FEYVRGRQRVMRKGVAIGRMPVMLRSSKCVLANKTPAEMTVLN 242
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
E + GGYFI+NG E+V IL ++ + + ++E RK +S
Sbjct: 243 ECPLDPGGYFIVNGTEKV----ILVQEQLSKNRIIVETDPKKEIVQASVTSSSNERKSKS 298
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
+ LK L V+ + +P+ I+LKA+ D E+ L D+ Y+
Sbjct: 299 YIVLKKDKLY---VKHNVLSED----IPIVILLKAMGIHTDKEML-LLVAGVDKVYQ--- 347
Query: 218 GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESY--YAVAETV- 274
E I E L + T+ Q L IG + I+ QS SY V E V
Sbjct: 348 ---------EDFAINFEEAIKLGIYTQQQALDWIGARIK--INRKQSPSYRRTHVQEAVE 396
Query: 275 -IRDYIFVHLNDNNDKFN----LLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
I I H+ N F + M +++ + S+ D+ D L N+ + L G L+
Sbjct: 397 AIASVIISHIEVKNMNFRPKAVYVAHMARRVLMAKNDASLVDDRDYLGNKRLELAGQLLA 456
Query: 330 IYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIET---ML 386
+ ++ + + K I D++ N + + F+ ++ + + ++ + +I T L
Sbjct: 457 LLFEDLFKKFCFDIKMNI-DKVLNKRNRAEAFDAYSVITMHSNHITQGMNRAISTGNWSL 515
Query: 387 KTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLLPES 445
K R+ +RAG T RL+++ + + + F R S R L P
Sbjct: 516 KRFRM---------ERAGVTHVLSRLSYIAALGMMTRI--SSQFEKTRKVSGPRALQPSQ 564
Query: 446 WGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDF------SKMRTSILRVLIGV 499
+G LCP TP+GE CGL+ ++ + + D G +R+ ++T + L G
Sbjct: 565 FGMLCPADTPEGEACGLVKNLALMTHITTN-DEEGPVRNLIFMLGAEDIQTVGGKELYGP 623
Query: 500 GM----IPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDD 555
G I P + P L R +G I S + + H +R A V DD
Sbjct: 624 GCYTISINGTPTALTRRPKYFLDAFRRLRRMGRI-SEFVSIYINHHQR----AVHVATDD 678
Query: 556 LEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEE-------------SQNIELIG 602
G + L G + + + +RN ++ ++ +N LI
Sbjct: 679 ---GRICRPLIVVENGKSRVNA--QHLEKLRNGTMQFDDFLAQGLVEYLDVNEENDSLIS 733
Query: 603 PFEQVFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQM 662
+E+ E TH EI P +L VA L PY HNQSPRN YQC M
Sbjct: 734 IYEKDITET---------------TTHLEIEPFTVLGAVAGLIPYPHHNQSPRNTYQCAM 778
Query: 663 AKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGY 722
KQ +G R D LY + PQ P+V++ T D+ P G NAIVAV++Y+GY
Sbjct: 779 GKQAIGAIASNQFLRIDSILYLMVYPQKPMVKSRTIELTKYDQLPAGQNAIVAVMSYSGY 838
Query: 723 DMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKV-DRGQKLFRRNKDAKSLHSVIDS 781
D+EDA++LNK SVDRG Q+++ +L N DR N H++++S
Sbjct: 839 DIEDALVLNKGSVDRGFGRCQVFRKYVTNLKSYSNGTKDRLSGPTYENDAPIRKHALLES 898
Query: 782 DGLPYVGQMIHPGEPYC--SIYDKTTNSWRTNSRKGS--------------ESVFVDYVA 825
DGL VG+ ++ GE Y S D++ +S NS G + ++D V
Sbjct: 899 DGLAAVGEQVNAGEVYINKSTPDQSMSSGFPNSDAGRPVSYMPTPMTYKLPDPAYIDKVM 958
Query: 826 VDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDL 885
V + ++N Q + R TR P +GDKFSSRHGQKGV + DMPF+ TG+ PD+
Sbjct: 959 VSVTENEN--QLVKVLTRQTRRPEVGDKFSSRHGQKGVVGIIADQADMPFTD-TGINPDI 1015
Query: 886 IINPHAFPSRMTIAMLLESVAAK 908
I+NPH FPSRMT+ +LE VA K
Sbjct: 1016 IMNPHGFPSRMTVGKMLELVAGK 1038
>gi|134055102|emb|CAK43742.1| unnamed protein product [Aspergillus niger]
Length = 1225
Score = 293 bits (749), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 266/923 (28%), Positives = 410/923 (44%), Gaps = 121/923 (13%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR +Y + D F+Y+ V+R+ G+ PVML++ +C L ++ L
Sbjct: 184 CRLRDTTYAAPIQVD--FEYVRGRQRVMRKGVAIGRMPVMLRSSKCVLANKTPAEMTVLN 241
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
E + GGYFI+NG E+V IL ++ + + ++E RK +S
Sbjct: 242 ECPLDPGGYFIVNGTEKV----ILVQEQLSKNRIIVETDPKKEIVQASVTSSSNERKSKS 297
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
+ LK L V+ + +P+ I+LKA+ D E+ L D+ Y+
Sbjct: 298 YIVLKKDKLY---VKHNVLSED----IPIVILLKAMGIHTDKEML-LLVAGVDKVYQ--- 346
Query: 218 GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESY--YAVAETV- 274
E I E L + T+ Q L IG + I+ QS SY V E V
Sbjct: 347 ---------EDFAINFEEAIKLGIYTQQQALDWIGARIK--INRKQSPSYRRTHVQEAVE 395
Query: 275 -IRDYIFVHLNDNNDKFN----LLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
I I H+ N F + M +++ + S+ D+ D L N+ + L G L+
Sbjct: 396 AIASVIISHIEVKNMNFRPKAVYVAHMARRVLMAKNDASLVDDRDYLGNKRLELAGQLLA 455
Query: 330 IYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIET---ML 386
+ ++ + + K I D++ N + + F+ ++ + + ++ + +I T L
Sbjct: 456 LLFEDLFKKFCFDIKMNI-DKVLNKRNRAEAFDAYSVITMHSNHITQGMNRAISTGNWSL 514
Query: 387 KTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLLPES 445
K R+ +RAG T RL+++ + + + F R S R L P
Sbjct: 515 KRFRM---------ERAGVTHVLSRLSYIAALGMMTRI--SSQFEKTRKVSGPRALQPSQ 563
Query: 446 WGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDF------SKMRTSILRVLIGV 499
+G LCP TP+GE CGL+ ++ + + D G +R+ ++T + L G
Sbjct: 564 FGMLCPADTPEGEACGLVKNLALMTHITTN-DEEGPVRNLIFMLGAEDIQTVGGKELYGP 622
Query: 500 GM----IPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDD 555
G I P + P L R +G I S + + H +R A V DD
Sbjct: 623 GCYTISINGTPTALTRRPKYFLDAFRRLRRMGRI-SEFVSIYINHHQR----AVHVATDD 677
Query: 556 LEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEE-------------SQNIELIG 602
G + L G + + + +RN ++ ++ +N LI
Sbjct: 678 ---GRICRPLIVVENGKSRVNA--QHLEKLRNGTMQFDDFLAQGLVEYLDVNEENDSLIS 732
Query: 603 PFEQVFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQM 662
+E+ E TH EI P +L VA L PY HNQSPRN YQC M
Sbjct: 733 IYEKDITET---------------TTHLEIEPFTVLGAVAGLIPYPHHNQSPRNTYQCAM 777
Query: 663 AKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGY 722
KQ +G R D LY + PQ P+V++ T D+ P G NAIVAV++Y+GY
Sbjct: 778 GKQAIGAIASNQFLRIDSILYLMVYPQKPMVKSRTIELTKYDQLPAGQNAIVAVMSYSGY 837
Query: 723 DMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKV-DRGQKLFRRNKDAKSLHSVIDS 781
D+EDA++LNK SVDRG Q+++ +L N DR N H++++S
Sbjct: 838 DIEDALVLNKGSVDRGFGRCQVFRKYVTNLKSYSNGTKDRLSGPTYENDAPIRKHALLES 897
Query: 782 DGLPYVGQMIHPGEPYC--SIYDKTTNSWRTNSRKGS--------------ESVFVDYVA 825
DGL VG+ ++ GE Y S D++ +S NS G + ++D V
Sbjct: 898 DGLAAVGEQVNAGEVYINKSTPDQSMSSGFPNSDAGRPVSYMPTPMTYKLPDPAYIDKVM 957
Query: 826 VDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDL 885
V + ++N Q + R TR P +GDKFSSRHGQKGV + DMPF+ TG+ PD+
Sbjct: 958 VSVTENEN--QLVKVLTRQTRRPEVGDKFSSRHGQKGVVGIIADQADMPFTD-TGINPDI 1014
Query: 886 IINPHAFPSRMTIAMLLESVAAK 908
I+NPH FPSRMT+ +LE VA K
Sbjct: 1015 IMNPHGFPSRMTVGKMLELVAGK 1037
>gi|406604716|emb|CCH43851.1| DNA-directed RNA polymerase III subunit [Wickerhamomyces ciferrii]
Length = 1152
Score = 290 bits (742), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 263/976 (26%), Positives = 427/976 (43%), Gaps = 141/976 (14%)
Query: 9 FEPLRELVRHHIESFDYMLDEGLSEMFD-------------------------------- 36
F ++ LV+ H++SF+Y +D L ++
Sbjct: 60 FLKVKGLVKQHLDSFNYFVDVDLKKIIKANEKVLSDVDPDFYIKYLDIRVGEASPAARNN 119
Query: 37 -----HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQ 91
CR ++Y+ + DVE Y ++ + G+ P+ML++ +C L GA
Sbjct: 120 MLPPHECRLRDMTYSAPIYVDVE--YTRGRKIIMHKGLEIGKMPIMLRSNKCILDGASEA 177
Query: 92 KLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRC 151
K+ SL E + GGYFI+NG E+V IL ++ + + ++++
Sbjct: 178 KMASLNECPLDPGGYFIVNGTEKV----ILIQEQLSKNRIIVEADEKKQIVQASVTSSTH 233
Query: 152 VRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDE 211
RK ++ V K N + L +E +P+ IVLKA +DLEI L C D
Sbjct: 234 ERKSKTYVVTK-----NDKIYLKHNSISEE--VPIVIVLKAAGIISDLEIM-QLVCGDDA 285
Query: 212 KYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDG---LQSESYY 268
Y+ + I E + + T+ Q L+ IG + + + E
Sbjct: 286 AYQ------------DSFAINFEECAKVGIYTQQQALEFIGAKVKTMRRAKLSILQEGIE 333
Query: 269 AVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLI 328
A+A TVI ++ V+ D +K + M +++ + + + D+ D + N+ + L G L+
Sbjct: 334 AIATTVIA-HLTVNDLDFREKALYIALMTRRVVMAMHNPKMVDDRDYVGNKRLELAGQLM 392
Query: 329 TIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKT 388
++ ++ + + K I + + +F L NI S I T + + T
Sbjct: 393 SLLFEDLFKKFNTDFKANIDKILRKPNRATEFDALLNINI-----HSNNITTGLNRAIST 447
Query: 389 GRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLLPESWG 447
G + + +RAG T RL+++ + + + F R S R L P +G
Sbjct: 448 GNWSLKRFK--MERAGVTHVLSRLSYISALGMMTRI--SSQFEKSRKVSGPRALQPSQFG 503
Query: 448 FLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPK 507
LC TP+GE CGL+ ++ + + D + L LIGV I +
Sbjct: 504 MLCTSDTPEGEACGLVKNLALMTHITT---------DDEEEPIKKLCYLIGVEEISVIDS 554
Query: 508 LVKSGPPAVLSVLLDGRVVGVIP-SSEIEKVVAHLRRL-KVSAASVIPDDLEVGYVPLSL 565
+ V L+G ++G ++ + +LRR KVS ++ + +
Sbjct: 555 ---ASLHDNFGVYLNGTIIGTTRFPTKFVSLFRNLRRTGKVSE-----------FISIYI 600
Query: 566 GGAYPGLYLFTSPPKFVRPVRNISLPSEESQ------------NIELIGPFEQVFME-IR 612
+++ T + RP+ I + + ES+ ++ +Q +E +
Sbjct: 601 NSHQKAVHIATDGGRICRPL--IIIENGESKVKAHHLLKLKQGKLQFDDFLKQGLVEYLD 658
Query: 613 CPDGGDG-----GRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTM 667
+ D R ATH EI P +L VA L PY HNQSPRN YQC M KQ +
Sbjct: 659 VNEENDCYIALYERDITEKATHLEIEPFTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQAI 718
Query: 668 GFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDA 727
G R D LY + PQ P+V++ T D+ P G NA VAV++Y+GYD+EDA
Sbjct: 719 GAIAYNQFHRIDTLLYLMVYPQQPMVKSKTIELIDYDKLPAGQNATVAVMSYSGYDIEDA 778
Query: 728 MILNKSSVDRGMCHGQIYQTETIDLS---DDGNKVDRGQKLFRRNKDAKSLHSVIDSDGL 784
++LNKSS+DRG Q+ + T L + + G ++ + N + H+ + DGL
Sbjct: 779 LVLNKSSIDRGFGRCQVLRKNTTVLKRYPNHTKDIIAGMRV-KDNGEPTFQHASLGPDGL 837
Query: 785 PYVGQMIHPGEPYC----------SIYDKTTNSWRTNS--RKGSESVFVDYVAVDMKNSK 832
VG + G+ Y SI ++ T +R K E ++D V M S
Sbjct: 838 AEVGTRVESGQVYINKSIPTNAADSIMNQDTGEYRETPVVYKAPEPSYIDQVM--MTTSD 895
Query: 833 NLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAF 892
N + + R TR P +GDKFSSRHGQKGVC + D+PF+ G+ PD+I+NPH F
Sbjct: 896 NDQELIKVLLRQTRRPELGDKFSSRHGQKGVCGIIVQQEDLPFND-DGISPDIIMNPHGF 954
Query: 893 PSRMTIAMLLESVAAK 908
PSRMT+ +LE V+ K
Sbjct: 955 PSRMTVGKMLELVSGK 970
>gi|10438131|dbj|BAB15175.1| unnamed protein product [Homo sapiens]
Length = 459
Score = 290 bits (741), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 145/283 (51%), Positives = 189/283 (66%), Gaps = 3/283 (1%)
Query: 627 ATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQ 686
TH+E+ P +LSV+AN P+SD NQSPRNMYQCQM KQTMGF + + R+D KLY LQ
Sbjct: 15 TTHQELFPHSLLSVIANFIPFSDLNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQ 74
Query: 687 TPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQ 746
TPQ+P+VR + Y Y +D YP GTNAIVAV++YTGYDMEDAMI+NK+S +RG HG +Y+
Sbjct: 75 TPQSPLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYK 134
Query: 747 TETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTN 806
+E IDLS+ + D + D + L +D DGLP++G + G+PY S + T
Sbjct: 135 SEFIDLSEKIKQGDSSLVFGIKPGDPRVLQK-LDDDGLPFIGAKLQYGDPYYSYLNLNTG 193
Query: 807 SWRTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHTRNPIIGDKFSSRHGQKGVCS 865
K E+ VD + V ++ + K I R RNP IGDKF+SRHGQKG+ S
Sbjct: 194 ESFVMYYKSKENCVVDNIKVCSNDTGSGKFKCVCITMRVPRNPTIGDKFASRHGQKGILS 253
Query: 866 QLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
+LWP DMPF+ +GM PD++ NPH FPSRMTI ML+ES+A K
Sbjct: 254 RLWPAEDMPFT-ESGMVPDILFNPHGFPSRMTIGMLIESMAGK 295
>gi|443693201|gb|ELT94631.1| hypothetical protein CAPTEDRAFT_178602 [Capitella teleta]
Length = 1134
Score = 290 bits (741), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 256/918 (27%), Positives = 413/918 (44%), Gaps = 114/918 (12%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR ++Y+ + D+E Y +VR G+ P+ML++ C L G +L L+
Sbjct: 98 CRLRDMTYSAPITVDIE--YTRGSQRIVRNNLPIGRMPIMLRSSNCVLVGKVPAELAKLQ 155
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
E + GGYFI+ G+E+V +++ +Q M+ + D++ RK ++
Sbjct: 156 ECPIDPGGYFIVRGVEKV---ILIQEQLSKNRMIVDT--DKKGNAMCSVTSSTHERKSKT 210
Query: 158 SVTLK--LYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKK 215
+V +K YY+ + ++ LP+ I LKA+ +D EI
Sbjct: 211 NVIMKHHKYYIQHNTLSED---------LPIAIALKAMGIESDQEIVQ------------ 249
Query: 216 EKGAVGS-PLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQP--VIDGLQSESYYAVAE 272
VGS +V + L E + T++Q L+++G + + G +S A
Sbjct: 250 ---MVGSEEMVLAAMAPCLEECHRAQVYTQVQALKYMGGKVRQRRIWGGGAKKSKAEEAR 306
Query: 273 TVIRDYIFVHLNDNNDKFNL----LIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLI 328
+++ I H+ N F + ML++ +T D+ D + N+ + L G L+
Sbjct: 307 ELLQGTIIAHVPVTNWNFKVKASYTALMLRRCILAQGNTMNVDDRDYVGNKRLELAGQLL 366
Query: 329 TIYLKEKLEDWLRKGKKLIQDEI-ENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLK 387
++ ++ + + + K++ I + +FD I K M ++ QI + +
Sbjct: 367 SLLFEDLFKKFNSELKRIADMTIPKPRAAQFD------IVKHMRQD---QITNGLTHAIS 417
Query: 388 TGRLATQT-GLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLLPES 445
+G + + +D R G T RL+F+ + + + F R S R L P
Sbjct: 418 SGNWSIKRFKMD---RQGVTQVLSRLSFISALGHMTRI--TSQFEKTRKVSGPRSLQPSQ 472
Query: 446 WGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSL 505
WG LCP TP+GE CGL+ ++ V + IR + + L G +
Sbjct: 473 WGMLCPSDTPEGEACGLVKNLALMTHVTTDLPEESIIRLAHNLGVEDIHFLSGDELT--- 529
Query: 506 PKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSL 565
P + VLL+G ++GVI E ++V RR++ A + + +V +S
Sbjct: 530 -------SPLIYLVLLNGNILGVI--REYRRLVRTFRRMR--RAGYVSE-----FVSISP 573
Query: 566 GGAYPGLYLFTSPPKFVRP---VRNISLPSEESQNIEL---IGPFEQVFMEIRCPDGGDG 619
A+ +++ + + RP V N ++ EL + FE E
Sbjct: 574 NHAHRVVHIASDGGRVCRPYIIVENGEPRVKDRHIQELTQGVRCFEDFLQEGLVEYLDVN 633
Query: 620 GRRNAFPA----------THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGF 669
+ F A TH EI P +L V A L PY HNQSPRN YQC M KQ MG
Sbjct: 634 EENDCFIALYESEIHKETTHLEIEPFTILGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGT 693
Query: 670 SVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMI 729
+ R D +Y L PQ P+V+T T G D+ P G NA VAV++Y+GYD+EDA+I
Sbjct: 694 IGYNQRNRIDSLMYLLCYPQAPMVKTKTIDLIGFDKIPAGQNATVAVMSYSGYDIEDALI 753
Query: 730 LNKSSVDRGMCHGQIYQTETIDLSDDGNKV-DR--GQKLFRRNKDAKSLHSVIDSDGLPY 786
LNK+S+DRG +Y+ + L N+ D+ G + K H ++D DG+
Sbjct: 754 LNKASLDRGFGRCLVYRNAKVALKRYANQTFDKVMGPMIDAETKKQIWRHDILDMDGICS 813
Query: 787 VGQMIHPGEPYCSIY--DKTTNSWRTN--------------SRKGSESVFVDYVAVDMKN 830
G+ + + + Y T N +++ KG +++ V +
Sbjct: 814 PGEKVENKQLLVNKYMPTVTINPLQSSGGQPQQPEYRDVPLGYKGPMPSYIEKVMISSNE 873
Query: 831 SKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPH 890
+ K I R TR P IGDKFSSRHGQKGVC + P DMPFS + G+ PD+I+NPH
Sbjct: 874 EEAFIIK--ILLRQTRRPEIGDKFSSRHGQKGVCGLIVPQADMPFSNL-GICPDIIMNPH 930
Query: 891 AFPSRMTIAMLLESVAAK 908
+PSRMT+ L+E + +K
Sbjct: 931 GYPSRMTVGKLIELMGSK 948
>gi|149238948|ref|XP_001525350.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Lodderomyces
elongisporus NRRL YB-4239]
gi|146450843|gb|EDK45099.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Lodderomyces
elongisporus NRRL YB-4239]
Length = 1157
Score = 288 bits (737), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 269/1000 (26%), Positives = 433/1000 (43%), Gaps = 171/1000 (17%)
Query: 9 FEPLRELVRHHIESFDYMLDEGLSEMFD-------------------------------- 36
F ++ LV+ H++SF+Y +D L ++
Sbjct: 47 FLKIKGLVKQHLDSFNYFVDTDLKKILKANSLVLSDVDPDFYVKYLDIRVGHKSTSAPGT 106
Query: 37 --------HCRQAKISYTGKLMADVEFQYLDAGSPVVRER-FNFGQFPVMLKTRRCHLQG 87
CR ++Y+ + DVE+ G ++R G+ PVML++ +C L G
Sbjct: 107 KEVILPPHECRLRDLTYSAPIYVDVEYT---RGRKIIRHNDLEIGRMPVMLRSNKCMLDG 163
Query: 88 ADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAV 147
D +++ + E + GGYF++NG E+V +++ +Q ++ + D ++G +V
Sbjct: 164 LDERQMAQVDECPLDPGGYFVVNGTEKV---ILVQEQLSKNRIIVEA--DDKKGIVQASV 218
Query: 148 VIRC-VRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLT 206
RK ++ V K NG + L G++ +P+ IVLKA T+DLEI L
Sbjct: 219 TSSTHERKSKTYVITK-----NGKIYLKHNSIGED--VPIVIVLKAAGITSDLEIL-QLV 270
Query: 207 CCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQ-------PVI 259
C + Y+ + + E L + T+ Q L ++G+ + P +
Sbjct: 271 CGSNPHYQ------------DLFVVNFEEAARLEVFTQQQALLYLGKRVKTIRRAGAPKL 318
Query: 260 DGLQSESYYAVAETVIRDYIFVHLNDNNDKFN----LLIFMLQKLFSLVDHTSVSDNPDS 315
LQ E A+A T++ HL +N +F + M +++ + + + D+ D
Sbjct: 319 SQLQ-EGIEAIATTIV-----AHLTVSNLQFKEKAFYMAMMARRVVMAMHNPKMVDDRDY 372
Query: 316 LQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPS 375
+ N+ + L G L+++ ++ + + K I ++ + +F L +I S
Sbjct: 373 VGNKRLELAGQLMSLLFEDLFKKFNSDFKANIDKILKKPSRTTEFDALLSINI-----HS 427
Query: 376 KQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRT 435
I + + TG + + +RAG T RL+++ + + + F R
Sbjct: 428 NNITMGLNRAISTGNWSLKRFK--MERAGVTHVLSRLSYISALGMMTRI--SSQFEKSRK 483
Query: 436 TS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILR 494
S R L P +G LC TP+GE CGL+ ++ + + D ++ L
Sbjct: 484 VSGPRALQPSQFGMLCTADTPEGEACGLVKNLALMTHITT---------DDEELPIKKLC 534
Query: 495 VLIGVGMIPSL--PKLVKSGPPAVLSVLLDGRVVGV--IPSSEIEKVVAHLRRL-KVSAA 549
+ +G I L L G V L+G ++G P + HLRR KVSA
Sbjct: 535 IALGCESILGLDSSTLHVDGN---FGVFLNGTLIGATRFPVKFVNDF-RHLRRAGKVSA- 589
Query: 550 SVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPV----RNISLPSEESQNIELIGP-- 603
++ + + ++L T + RP+ +N S E L G
Sbjct: 590 ----------FISIYTNTHHQAVHLATDGGRICRPLIIVEKNKSKVQSEHLKKLLRGEWQ 639
Query: 604 FEQVFME---------------IRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYS 648
F+ E I + G NA TH EI P +L VA L PY
Sbjct: 640 FDDFLREGLVEYLDVNEENDSLIALYEKDIGSNANA-TVTHLEIEPFTVLGAVAGLIPYP 698
Query: 649 DHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPT 708
HNQSPRN YQC M KQ +G R D LY + PQ P+V+T T D+ P
Sbjct: 699 HHNQSPRNTYQCAMGKQAIGAIAYNQFKRIDTLLYFMVYPQQPMVKTKTIELINYDKLPA 758
Query: 709 GTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRR 768
G NA VAV++Y+GYD+EDA++LNKSS+DRG Q+ + T+ L N R
Sbjct: 759 GQNATVAVMSYSGYDIEDALVLNKSSLDRGFGRCQVVRKNTVQLKKYPNHTKDILSGMRV 818
Query: 769 NKDAKSL--HSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNS-------------- 812
+++ + + H + DGL VG I G+ + + + T + T +
Sbjct: 819 DENNEPIFPHQALGPDGLGEVGSRIENGQVFANKFVPTNSGESTFAGGMQQQPQAESHRE 878
Query: 813 ----RKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLW 868
KG E +VD V M S N + R TR P +GDKFSSRHGQKGVC +
Sbjct: 879 AAQYYKGPEPSYVDQVM--MSVSDNDQALVKVLLRQTRRPELGDKFSSRHGQKGVCGIIV 936
Query: 869 PDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
D+PF+ G+ PD+I+NPH FPSRMT+ ++E ++ K
Sbjct: 937 QHEDLPFND-DGISPDIIMNPHGFPSRMTVGKMIELISGK 975
>gi|240972645|ref|XP_002401144.1| RNA polymerase II second largest subunit (RPB2), putative [Ixodes
scapularis]
gi|215490975|gb|EEC00616.1| RNA polymerase II second largest subunit (RPB2), putative [Ixodes
scapularis]
Length = 442
Score = 288 bits (736), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 145/283 (51%), Positives = 178/283 (62%), Gaps = 44/283 (15%)
Query: 627 ATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQ 686
TH+E+ T MLSV+ N+ PYSD NQSPRNMYQCQM KQTMG QAL++R+D KLY +Q
Sbjct: 8 TTHQELRQTSMLSVLGNMIPYSDFNQSPRNMYQCQMGKQTMGTPCQALRYRSDNKLYRIQ 67
Query: 687 TPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQ 746
TPQTP VR Y Y +D++PTGTNAIVAV++YTGYDMEDAM+LNKSSV+RG HG +Y+
Sbjct: 68 TPQTPFVRPTAYDHYHMDDFPTGTNAIVAVISYTGYDMEDAMVLNKSSVERGFKHGCVYK 127
Query: 747 TETIDLSDDGNKVDRGQKL-FRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTT 805
TE ++L R L F R K L +D DGLPY+G + +P CS
Sbjct: 128 TELVNLRVLAGDTGRQTSLVFGRKATDKYLEGKVDLDGLPYIGVKVEQNDPVCS------ 181
Query: 806 NSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCS 865
F + RNP+IGDKF+SRHGQKGVCS
Sbjct: 182 ------------------------------------FVNLRNPMIGDKFASRHGQKGVCS 205
Query: 866 QLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
QLWP +MPF+ +GM PD+I NPH FPSRMTI M++ES+A K
Sbjct: 206 QLWPIENMPFT-ESGMTPDIIFNPHGFPSRMTIGMMIESMAGK 247
>gi|172383|gb|AAB59324.1| RNA polymerase III [Saccharomyces cerevisiae]
Length = 1149
Score = 287 bits (734), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 266/981 (27%), Positives = 428/981 (43%), Gaps = 147/981 (14%)
Query: 9 FEPLRELVRHHIESFDYMLDEGLSEMFD-------------------------------- 36
F ++ LV+ H++SF+Y +D L ++
Sbjct: 51 FLKVKGLVKQHLDSFNYFVDTDLKKIIKANQLILSDVDPEFYLKYVDIRVGKKSSSSTKD 110
Query: 37 ------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADS 90
CR ++Y+ + D+E Y + ++ + G+ P+ML++ +C L AD
Sbjct: 111 YLTPPHECRLRDMTYSAPIYVDIE--YTRGRNIIMHKDVEIGRMPIMLRSNKCILYDADE 168
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
K+ L E + GGYFI+NG E+V +++ +Q ++ + D +EG +V
Sbjct: 169 SKMAKLNECPLDPGGYFIVNGTEKV---ILVQEQLSKNRIIVEA--DEKEGIVQASVTSS 223
Query: 151 C-VRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY 209
RK ++ V K NG + L +E +P+ IVLKA +DLEI L C
Sbjct: 224 THERKSKTYVITK-----NGKIYLKHNSIAEE--IPIAIVLKACGILSDLEIM-QLVCGN 275
Query: 210 DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPV----IDGLQSE 265
D Y+ + + L E L + T+ Q L++IG + + + LQ E
Sbjct: 276 DSSYQ------------DIFAVNLEESSKLDIYTQQQALEYIGAKVKTMRRQKLTILQ-E 322
Query: 266 SYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPG 325
A+A TVI ++ V D +K + M +++ + + + D+ D + N+ + L G
Sbjct: 323 GIEAIATTVIA-HLTVEALDFREKALYIAMMTRRVVMAMYNPKMIDDRDYVGNKRLELAG 381
Query: 326 HLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETM 385
LI++ ++ + + K I ++ + ++ L +I S I + +
Sbjct: 382 QLISLLFEDLFKKFNNDFKLSIDKVLKKPNRAMEYDALLSINV-----HSNNITSGLNRA 436
Query: 386 LKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLLPE 444
+ TG + + +RAG T RL+++ + + + F R S R L P
Sbjct: 437 ISTGNWSLKRFK--MERAGVTHVLSRLSYISALGMMTRI--SSQFEKSRKVSGPRALQPS 492
Query: 445 SWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPS 504
+G LC TP+GE CGL+ ++ + + D + L ++GV I
Sbjct: 493 QFGMLCTADTPEGEACGLVKNLALMTHITT---------DDEEEPIKKLCYVLGVEDIT- 542
Query: 505 LPKLVKSGPPAV-LSVLLDGRVVGVI--PSSEIEKVVAHLRRL-KVSAASVIPDDLEVGY 560
L+ S + V L+G ++G I P+ + + HLRR KVS +
Sbjct: 543 ---LIDSASLHLNYGVYLNGTLIGSIRFPTKFVTQF-RHLRRTGKVSE-----------F 587
Query: 561 VPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFE-----QVFMEIRCPD 615
+ + +++ T + RP+ +S ++I L + F+++ +
Sbjct: 588 ISIYSNSHQMAVHIATDGGRICRPLIIVSDGQSRVKDIHLRKLLDGELDFDDFLKLGLVE 647
Query: 616 GGDGGRRN----------AFPA-THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAK 664
D N P+ TH EI P +L VA L PY HNQSPRN YQC M K
Sbjct: 648 YLDVNEENDSYIALYEKDIVPSMTHLEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGK 707
Query: 665 QTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDM 724
Q +G R D LY + PQ P+V+T T D+ P G NA VAV++Y+GYD+
Sbjct: 708 QAIGAIAYNQFKRIDTLLYLMTYPQQPMVKTKTIELIDYDKLPAGQNATVAVMSYSGYDI 767
Query: 725 EDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDR--GQKLFRRNKDAKSLHSVIDSD 782
EDA++LNKSS+DRG + + T L N G N D H + D
Sbjct: 768 EDALVLNKSSIDRGFGRCETRRKTTTVLKRYANHTQDIIGGMRVDENGDPIWQHQSLGPD 827
Query: 783 GLPYVGQMIHPGEPYCSIYDKTTNSWRTNSR---------------KGSESVFVDYVAVD 827
GL VG + G+ Y + T ++ N +G E +D V
Sbjct: 828 GLGEVGMKVQSGQIYINKSVPTNSADAPNPNNVNVQTQYREAPVIYRGPEPSHIDQVM-- 885
Query: 828 MKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLII 887
M S N + R R P +GDKFSSRHGQKGVC + DMPF+ G+ PD+I+
Sbjct: 886 MSVSDNDQALIKVLLRQNRRPELGDKFSSRHGQKGVCGIIVKQEDMPFND-QGIVPDIIM 944
Query: 888 NPHAFPSRMTIAMLLESVAAK 908
NPH FPSRMT+ ++E ++ K
Sbjct: 945 NPHGFPSRMTVGKMIELISGK 965
>gi|347829559|emb|CCD45256.1| similar to POLR1B protein [Botryotinia fuckeliana]
Length = 556
Score = 286 bits (733), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 156/348 (44%), Positives = 215/348 (61%), Gaps = 34/348 (9%)
Query: 581 FVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSV 640
VRPV+ + L E+ +GP EQ FM I + + TH E PT +LS+
Sbjct: 1 MVRPVKYLPLDKED-----FVGPLEQPFMSIAVTEQ----EIESGEHTHVEFDPTHILSI 51
Query: 641 VANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTK 700
+AN+TP+SD NQSPRNMYQCQM KQ+MG A+++R D K Y LQT QTPIVR + +
Sbjct: 52 LANMTPFSDFNQSPRNMYQCQMGKQSMGTPGTAIRYRTDNKAYRLQTGQTPIVRAPLHNE 111
Query: 701 YGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVD 760
YG D +P G N++VAV++YTGYDM+DAMI+NKS+ +RG HG IY+T+ +L ++G+K
Sbjct: 112 YGFDNFPNGMNSVVAVISYTGYDMDDAMIINKSAHERGFGHGTIYKTKKYEL-EEGHKSR 170
Query: 761 RG---QKLFRRNKDA---KSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSR- 813
+KLF + ID DGLP++G+M+ G+ + + T S N +
Sbjct: 171 SAKNIKKLFGFAPGGLVKAEWKAAIDEDGLPFIGRMVQNGDLIAAWH---TVSMDENGKY 227
Query: 814 ------------KGSESVFVDYVA-VDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQ 860
K +E F++ V + +N Q +++ R R+P+IGDKFSSRHGQ
Sbjct: 228 VNRDGQTHFEKYKETEIAFIEEVRLIGNENGIEPCQAISVKLRIPRSPVIGDKFSSRHGQ 287
Query: 861 KGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
KGVCSQ WP +DMPF+ +G++PD IINPHAFPSRMTI M +ES+A K
Sbjct: 288 KGVCSQKWPAVDMPFT-ESGIQPDTIINPHAFPSRMTIGMFVESLAGK 334
>gi|444316230|ref|XP_004178772.1| hypothetical protein TBLA_0B04150 [Tetrapisispora blattae CBS 6284]
gi|387511812|emb|CCH59253.1| hypothetical protein TBLA_0B04150 [Tetrapisispora blattae CBS 6284]
Length = 1148
Score = 286 bits (732), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 265/916 (28%), Positives = 413/916 (45%), Gaps = 115/916 (12%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR ++Y+ + D+E Y + V+ G+ P+ML++ +C L G D Q + L
Sbjct: 119 CRLRDMTYSAPIYVDIE--YTRGRNIVIHRDVEIGKMPIMLRSNKCILNGCDEQMMARLN 176
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRC-VRKDQ 156
E + GGYFI+NG E+V +++ +Q ++ + D ++G +V RK +
Sbjct: 177 ECPLDPGGYFIVNGTEKV---ILVQEQLSKNRIIVEA--DEKKGVVQASVTSSTHERKSK 231
Query: 157 SSVTLK--LYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYK 214
+ V K YL + S+ +P+ IVLKA +DLEI L C D Y+
Sbjct: 232 TYVVTKNDKIYLKHNSISED---------VPIAIVLKAAGIVSDLEIL-QLVCGNDSSYQ 281
Query: 215 KEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPV----IDGLQSESYYAV 270
+ + L E + T+ Q L++IG + + + LQ E A+
Sbjct: 282 ------------DIFAVNLEEAAKFKIYTQQQALEYIGTKVKTIRKQKLTALQ-EGIEAI 328
Query: 271 AETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITI 330
A TVI ++ V D +K + M +++ + + + D+ D + N+ + L G LI++
Sbjct: 329 ATTVIA-HLTVEELDFREKALYIAMMTRRVVMAIHNPKMVDDRDYVGNKRLELAGQLISL 387
Query: 331 YLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIET---MLK 387
++ + + K I ++ + ++ L +I V N + + SI T LK
Sbjct: 388 LFEDLFKKFTSDFKMSIDKVLKKPNRAMEYDALLSIN-VHCNNITSGLNRSISTGNWSLK 446
Query: 388 TGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLLPESW 446
++ +RAG T RL+++ + + + F R S R L P +
Sbjct: 447 RFKM---------ERAGVTHVLSRLSYISALGMMTRI--SSQFEKSRKVSGPRALQPSQF 495
Query: 447 GFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLP 506
G LC TP+GE CGL+ ++ + + D I+ L ++GV I SL
Sbjct: 496 GMLCTADTPEGEACGLVKNLALMTHITTD-DEEDPIKK--------LCYVLGVEDISSLD 546
Query: 507 KLVKSGPPAVLSVLLDGRVVGV--IPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLS 564
+ V L+G +VG P+ + + R KVSA ++ +
Sbjct: 547 S---ATIHESYGVHLNGTLVGTTRFPNKFVTQFRDLRRAGKVSA-----------FISIY 592
Query: 565 LGGAYPGLYLFTSPPKFVRPV----RNISLPSEESQNIELIGP--FEQVFMEIRCPDGGD 618
+++ T + RP+ + SL E L G F+ F+++ + D
Sbjct: 593 TNSHQQAVHIATDGGRICRPLIVIEKGKSLVKAEHLRDLLNGDLVFDD-FLKLGLVEYLD 651
Query: 619 GGRRN-AFPA----------THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTM 667
N +F A TH EI P +L VA L PY HNQSPRN YQC M KQ +
Sbjct: 652 VNEENDSFIALYEKDITPAMTHLEIEPFTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQAI 711
Query: 668 GFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDA 727
G R D LY + PQ P+V+T T D+ P G NA VAV++Y+GYD+EDA
Sbjct: 712 GAIAYNQFKRIDTLLYLMIYPQQPMVKTKTIELINYDKLPAGQNATVAVMSYSGYDIEDA 771
Query: 728 MILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSL--HSVIDSDGLP 785
+ILNKSS+DRG + + T L N R +++ K + H + DGL
Sbjct: 772 LILNKSSIDRGFGRCETRRKTTTILKRYPNHTQDIIGGMRVDENGKPIWQHEALGPDGLG 831
Query: 786 YVGQMIHPGEPYC--SIYDKTT---NSWRTNSR--------KGSESVFVDYVAVDMKNSK 832
VG + G+ Y SI T + T S+ +G E VD V M S
Sbjct: 832 EVGMKVSSGQIYINKSIPTNTAEGLEAINTQSQYKETPVMYRGPEPSHVDQVM--MSVSD 889
Query: 833 NLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAF 892
N + R R P +GDKFSSRHGQKGVC + DMPF+ G+ PD+I+NPH F
Sbjct: 890 NDQALIKVLLRQNRRPELGDKFSSRHGQKGVCGLIVQQEDMPFND-QGINPDIIMNPHGF 948
Query: 893 PSRMTIAMLLESVAAK 908
PSRMT+ ++E ++ K
Sbjct: 949 PSRMTVGKMIELISGK 964
>gi|6324781|ref|NP_014850.1| Ret1p [Saccharomyces cerevisiae S288c]
gi|2507350|sp|P22276.2|RPC2_YEAST RecName: Full=DNA-directed RNA polymerase III subunit RPC2;
Short=RNA polymerase III subunit C2; AltName: Full=C128;
AltName: Full=DNA-directed RNA polymerase III 130 kDa
polypeptide
gi|1420485|emb|CAA99422.1| RPC128 [Saccharomyces cerevisiae]
gi|151945297|gb|EDN63540.1| RNA polymerase C [Saccharomyces cerevisiae YJM789]
gi|256269629|gb|EEU04911.1| Ret1p [Saccharomyces cerevisiae JAY291]
gi|259149688|emb|CAY86492.1| Ret1p [Saccharomyces cerevisiae EC1118]
gi|285815086|tpg|DAA10979.1| TPA: Ret1p [Saccharomyces cerevisiae S288c]
gi|392296534|gb|EIW07636.1| Ret1p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 1149
Score = 285 bits (730), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 265/981 (27%), Positives = 428/981 (43%), Gaps = 147/981 (14%)
Query: 9 FEPLRELVRHHIESFDYMLDEGLSEMFD-------------------------------- 36
F ++ LV+ H++SF+Y +D L ++
Sbjct: 51 FLKVKGLVKQHLDSFNYFVDTDLKKIIKANQLILSDVDPEFYLKYVDIRVGKKSSSSTKD 110
Query: 37 ------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADS 90
CR ++Y+ + D+E Y + ++ + G+ P+ML++ +C L AD
Sbjct: 111 YLTPPHECRLRDMTYSAPIYVDIE--YTRGRNIIMHKDVEIGRMPIMLRSNKCILYDADE 168
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
K+ L E + GGYFI+NG E+V +++ +Q ++ + D ++G +V
Sbjct: 169 SKMAKLNECPLDPGGYFIVNGTEKV---ILVQEQLSKNRIIVEA--DEKKGIVQASVTSS 223
Query: 151 C-VRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY 209
RK ++ V K NG + L +E +P+ IVLKA +DLEI L C
Sbjct: 224 THERKSKTYVITK-----NGKIYLKHNSIAEE--IPIAIVLKACGILSDLEIM-QLVCGN 275
Query: 210 DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPV----IDGLQSE 265
D Y+ + + L E L + T+ Q L++IG + + + LQ E
Sbjct: 276 DSSYQ------------DIFAVNLEESSKLDIYTQQQALEYIGAKVKTMRRQKLTILQ-E 322
Query: 266 SYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPG 325
A+A TVI ++ V D +K + M +++ + + + D+ D + N+ + L G
Sbjct: 323 GIEAIATTVIA-HLTVEALDFREKALYIAMMTRRVVMAMYNPKMIDDRDYVGNKRLELAG 381
Query: 326 HLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETM 385
LI++ ++ + + K I ++ + ++ L +I S I + +
Sbjct: 382 QLISLLFEDLFKKFNNDFKLSIDKVLKKPNRAMEYDALLSINV-----HSNNITSGLNRA 436
Query: 386 LKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLLPE 444
+ TG + + +RAG T RL+++ + + + F R S R L P
Sbjct: 437 ISTGNWSLKRFK--MERAGVTHVLSRLSYISALGMMTRI--SSQFEKSRKVSGPRALQPS 492
Query: 445 SWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPS 504
+G LC TP+GE CGL+ ++ + + D + L ++GV I
Sbjct: 493 QFGMLCTADTPEGEACGLVKNLALMTHITT---------DDEEEPIKKLCYVLGVEDIT- 542
Query: 505 LPKLVKSGPPAV-LSVLLDGRVVGVI--PSSEIEKVVAHLRRL-KVSAASVIPDDLEVGY 560
L+ S + V L+G ++G I P+ + + HLRR KVS +
Sbjct: 543 ---LIDSASLHLNYGVYLNGTLIGSIRFPTKFVTQF-RHLRRTGKVSE-----------F 587
Query: 561 VPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFE-----QVFMEIRCPD 615
+ + +++ T + RP+ +S ++I L + F+++ +
Sbjct: 588 ISIYSNSHQMAVHIATDGGRICRPLIIVSDGQSRVKDIHLRKLLDGELDFDDFLKLGLVE 647
Query: 616 GGDGGRRN----------AFPA-THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAK 664
D N P+ TH EI P +L VA L PY HNQSPRN YQC M K
Sbjct: 648 YLDVNEENDSYIALYEKDIVPSMTHLEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGK 707
Query: 665 QTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDM 724
Q +G R D LY + PQ P+V+T T D+ P G NA VAV++Y+GYD+
Sbjct: 708 QAIGAIAYNQFKRIDTLLYLMTYPQQPMVKTKTIELIDYDKLPAGQNATVAVMSYSGYDI 767
Query: 725 EDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDR--GQKLFRRNKDAKSLHSVIDSD 782
EDA++LNKSS+DRG + + T L N G N D H + D
Sbjct: 768 EDALVLNKSSIDRGFGRCETRRKTTTVLKRYANHTQDIIGGMRVDENGDPIWQHQSLGPD 827
Query: 783 GLPYVGQMIHPGEPYCSIYDKTTNSWRTNSR---------------KGSESVFVDYVAVD 827
GL VG + G+ Y + T ++ N +G E +D V
Sbjct: 828 GLGEVGMKVQSGQIYINKSVPTNSADAPNPNNVNVQTQYREAPVIYRGPEPSHIDQVM-- 885
Query: 828 MKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLII 887
M S N + R R P +GDKFSSRHGQKGVC + DMPF+ G+ PD+I+
Sbjct: 886 MSVSDNDQALIKVLLRQNRRPELGDKFSSRHGQKGVCGIIVKQEDMPFND-QGIVPDIIM 944
Query: 888 NPHAFPSRMTIAMLLESVAAK 908
NPH FPSRMT+ ++E ++ K
Sbjct: 945 NPHGFPSRMTVGKMIELISGK 965
>gi|79529842|ref|NP_199327.4| DNA-directed RNA polymerase III subunit C2 [Arabidopsis thaliana]
gi|332007826|gb|AED95209.1| DNA-directed RNA polymerase III subunit C2 [Arabidopsis thaliana]
Length = 1161
Score = 285 bits (729), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 278/1000 (27%), Positives = 434/1000 (43%), Gaps = 167/1000 (16%)
Query: 8 DFEPLRELVRHHIESFDYMLDEGLSEMFDH------------------------------ 37
+F +R LV+ H++SF+Y ++ G+ ++
Sbjct: 38 EFLKVRGLVKQHLDSFNYFINVGIHKIVKANSRITSTVDPSIYLRFKKVRVGEPSIINVN 97
Query: 38 ---------CRQAKISYTGKLMADVEFQYLDAGSPVVRERFN--FGQFPVMLKTRRCHLQ 86
CR A ++Y + ++E+ + G+ + N G+ P+ML++ RC L
Sbjct: 98 TVENINPHMCRLADMTYAAPIFVNIEYVHGSHGNKAKSAKDNVIIGRMPIMLRSCRCVLH 157
Query: 87 GADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKA 146
G D ++L L E + GGYFI+ G E+V +++ +Q +S R ++G + +
Sbjct: 158 GKDEEELARLGECPLDPGGYFIIKGTEKV---LLIQEQ---LSKNRIIIDSDKKGNINAS 211
Query: 147 VVIRC-VRKDQSSVTL---KLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIF 202
V + K ++ + + K+Y L+ V+ +P+ IVLKA+ +D EI
Sbjct: 212 VTSSTEMTKSKTVIQMEKEKIYLFLHRFVKK----------IPIIIVLKAMGMESDQEIV 261
Query: 203 NHLTCCYDEKYKKEKGAVG-SPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDG 261
VG P S + + E + T+ Q L ++ + + G
Sbjct: 262 Q---------------MVGRDPRFSASLLPSIEECVSEGVNTQKQALDYLEAKVKKISYG 306
Query: 262 LQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIF----MLQKLFSLVDHTSVSDNPDSLQ 317
E A +++RD H+ ++ F F ML+++ + + D+ D +
Sbjct: 307 TPPEKD-GRALSILRDLFLAHVPVPDNNFRQKCFYVGVMLRRMIEAMLNKDAMDDKDYVG 365
Query: 318 NQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENN---GKKFDFFNLANIKKVMEKNP 374
N+ + L G LI++ ++ + L + K + D I N +FDF + + K+
Sbjct: 366 NKRLELSGQLISLLFEDLFKTMLSEAIKNV-DHILNKPIRASRFDF------SQCLNKDS 418
Query: 375 SKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLR 434
I +E L TG + R G T RL+F+ + F + F R
Sbjct: 419 RYSISLGLERTLSTGNFDIKRFR--MHRKGMTQVLTRLSFIGSMGFITKI--SPQFEKSR 474
Query: 435 TTS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSIL 493
S R L P WG LCP TP+GE CGL+ ++ V + + + K+ + L
Sbjct: 475 KVSGPRSLQPSQWGMLCPCDTPEGESCGLVKNLALMTHVTTDEEEGPLVAMCYKLGVTDL 534
Query: 494 RVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSA----- 548
VL S +L P V+L+G ++G S + LRRL+ +
Sbjct: 535 EVL-------SAEEL---HTPDSFLVILNGLILG--KHSRPQYFANSLRRLRRAGKIGEF 582
Query: 549 ASVIPDDLE--------VGYVPLSLGGAYPGLY---------LFTSPPKFVRPVRN--IS 589
SV ++ + VG V L A G+ L F +R+ I
Sbjct: 583 VSVFTNEKQHCVYVASDVGRVCRPLVIADKGISRVKQHHMKELQDGVRTFDDFIRDGLIE 642
Query: 590 LPSEESQNIELIGPFEQVFMEIRCPDG----GDGGRRNAFPATHEEIHPTGMLSVVANLT 645
+N LI +E DG +G TH EI P +L VVA L
Sbjct: 643 YLDVNEENNALIALYES--------DGTTELDEGAEAAKADTTHIEIEPFTILGVVAGLI 694
Query: 646 PYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDE 705
PY HNQSPRN YQC M KQ MG R D LY L PQ P++ T T G D+
Sbjct: 695 PYPHHNQSPRNTYQCAMGKQAMGNIAYNQLNRMDTLLYLLVYPQRPLLTTRTIELVGYDK 754
Query: 706 YPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSD--DGNKVDRGQ 763
G NA VAV++++GYD+EDA+++NKSS+DRG I + + +S D DR
Sbjct: 755 LGAGQNATVAVMSFSGYDIEDAIVMNKSSLDRGFGRC-IVMKKIVAMSQKYDNCTADRIL 813
Query: 764 KLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCS------IYDKTTNSWRTNSRKGSE 817
R DA+ + ++D DGL G++I P + Y + K T++ + + +
Sbjct: 814 IPQRTGPDAEKMQ-ILDDDGLATPGEIIRPNDIYINKQVPVDTVTKFTSALSDSQYRPAR 872
Query: 818 SVF---------VDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLW 868
F VD VA+ L K I RHTR P +GDKFSSRHGQKGVC +
Sbjct: 873 EYFKGPEGETQVVDRVALCSDKKGQLCIKYII--RHTRRPELGDKFSSRHGQKGVCGIII 930
Query: 869 PDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
D PFS + G+ PDLI+NPH FPSRMT+ ++E + +K
Sbjct: 931 QQEDFPFSEL-GICPDLIMNPHGFPSRMTVGKMIELLGSK 969
>gi|395327723|gb|EJF60120.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Dichomitus squalens LYAD-421 SS1]
Length = 1142
Score = 285 bits (728), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 267/992 (26%), Positives = 421/992 (42%), Gaps = 162/992 (16%)
Query: 9 FEPLRELVRHHIESFDYMLDEGLSEMFD-------------------------------- 36
F ++ LV+ HI+SF+Y +D + +
Sbjct: 40 FLKVKGLVKQHIDSFNYFVDVDIKNILKANNKVTSDVDPRFWLKYTDIVVGFPDRTDADA 99
Query: 37 --------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGA 88
CR +Y+ ++ V QY + V R N G+ P+ML++ +C L G
Sbjct: 100 IDKSVTPHECRLRDTTYSAPIL--VTIQYTRGKTVVRRANVNIGRLPIMLRSNKCVLTGR 157
Query: 89 DSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVV 148
+ +L + E + GGYFI+ G E+V IL ++ + + T V
Sbjct: 158 NEAQLARMTECPLDPGGYFIVKGTEKV----ILVQEQLSKNRIIVEIDP-----TKGVVQ 208
Query: 149 IRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYL--------LPVGIVLKALVDTNDLE 200
C + K Y +GK YL +P+ I LKAL +D E
Sbjct: 209 ASCTSSTHGGLKSKTYVATK---------KGKIYLRHNSIHEDVPIAIALKALGIQSDKE 259
Query: 201 IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQP--V 258
I LT E YK + SP + E K L + TR Q L+ IG +
Sbjct: 260 IL-LLTAGNHEAYK----SAFSPNLEEAAK--------LGVFTRHQALEWIGSRVKVNRR 306
Query: 259 IDGLQSESYYAVAE---TVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDS 315
+ G + S+ E T++ ++ VH D K + M +++ +D + D+ D
Sbjct: 307 VVGPRRPSWEEALEALATIVLAHVPVHGLDFRPKAVFVATMTRRVLMAMDDEKMVDDRDY 366
Query: 316 LQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGK--KFDFFNLANIKKVMEKN 373
+ N+ + L G L+ + ++ + + K I ++ + +FD FN +
Sbjct: 367 VGNKRLELAGQLLALLFEDLFKTFNANLKAAIDKVLKKPSRTSEFDAFNTMQFQ------ 420
Query: 374 PSKQIGTSIETMLKTGRLATQT-GLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAG 432
I + TG + + +D RAG T RL+F+ + + + F
Sbjct: 421 -GDHITAGFVRAISTGNWSLKRFKMD---RAGVTHVLSRLSFISALGMMTRI--SSQFEK 474
Query: 433 LRTTS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTS 491
R S R L P WG LCP TP+GE CGL+ ++ + + + IR
Sbjct: 475 TRKVSGPRALQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDVEEEPIIR-------- 526
Query: 492 ILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASV 551
+ ++GV I SL + P V ++G ++G+ + + V++ RRL+ +
Sbjct: 527 -IAFMLGVEDI-SLATGAEIYGPHTFVVNVNGSIIGL--TRYPARFVSNFRRLRRAGRFS 582
Query: 552 IPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNI--SLPSEESQNIELIGPFEQVFM 609
+V + + + + + + + RP+ + P S++I + + F
Sbjct: 583 -------EFVSVYINHHHRTVLIASDGGRICRPMIIVENGRPKVTSEHIAQLKQGQLTFD 635
Query: 610 E------IRCPDGGDGG-------RRNAFPAT-HEEIHPTGMLSVVANLTPYSDHNQSPR 655
+ + D + ++ P T H EI P +L VA L PY HNQSPR
Sbjct: 636 DFLRKGLVEYLDVNEENDSYIALYEKDIVPGTTHLEIEPFTLLGAVAGLIPYPHHNQSPR 695
Query: 656 NMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVA 715
N YQC M KQ +G R D LY PQ P+V+T T G D P G NA VA
Sbjct: 696 NTYQCAMGKQAIGAIGYNQLNRIDTLLYLSVYPQQPMVKTKTIELIGYDRLPAGQNATVA 755
Query: 716 VLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKV-DR-GQKLFRRNKDAK 773
V++Y+GYD+EDA+ILNK+S+DRG Q+ + + N DR N +
Sbjct: 756 VMSYSGYDIEDALILNKASLDRGYGRCQVLRKNATLIRKYPNGTFDRLADAPLDENGQVQ 815
Query: 774 SLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVF------------- 820
+ ++ +DGL VG+ + PG+ Y I +T + NS G +
Sbjct: 816 KKYDIVQTDGLAGVGERVDPGDVY--INKQTPTNANDNSFTGQAATVPYKNTPMTYKSPV 873
Query: 821 ---VDYVAV-DMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFS 876
+D V V D +N + L + R TR P +GDKFSSRHGQKGVC + DMPF+
Sbjct: 874 AGQIDKVMVTDTENDQTL---IKVLIRQTRRPELGDKFSSRHGQKGVCGLIVNQEDMPFN 930
Query: 877 GVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
G+ PD I+NPH FPSRMT+ ++E +A K
Sbjct: 931 D-QGIVPDTIMNPHGFPSRMTVGKMIELLAGK 961
>gi|50292925|ref|XP_448895.1| hypothetical protein [Candida glabrata CBS 138]
gi|49528208|emb|CAG61865.1| unnamed protein product [Candida glabrata]
Length = 1133
Score = 284 bits (727), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 259/974 (26%), Positives = 434/974 (44%), Gaps = 137/974 (14%)
Query: 9 FEPLRELVRHHIESFDYMLDEGLSEMFD-------------------------------- 36
F ++ LV+ H++SF+Y +D L ++
Sbjct: 39 FLKVKGLVKQHLDSFNYFVDVDLKKIIKANQLILSDVDPEFYLKYVDIRVGQRSGSPHKD 98
Query: 37 ------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADS 90
CR ++Y+ + D+E Y + ++ + G+ P+ML++ +C L GAD
Sbjct: 99 QLVPPHECRLRDMTYSAPIYVDIE--YTRGRNIIMHKNVEIGRMPIMLRSNKCILHGADE 156
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
+ + L E + GGYFI+NG E+V IL ++ + + ++++
Sbjct: 157 KMMARLSECPLDPGGYFIVNGTEKV----ILVQEQLSKNRIIVEADEKKDIVQASVTSST 212
Query: 151 CVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYD 210
RK ++ V K NG + L +E +P+ IVLKA +DLEI L C D
Sbjct: 213 HERKSKTYVVTK-----NGKIYLKHNSIAEE--VPIVIVLKAAGIISDLEIM-QLVCGND 264
Query: 211 EKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPV----IDGLQSES 266
Y+ + + L E L++ T+ Q L++IG + + + LQ E
Sbjct: 265 SSYQ------------DIFSVNLEEAAKLNICTQQQALEYIGAKVKTMRRQKLTILQ-EG 311
Query: 267 YYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGH 326
A+A T+I ++ V D +K + M +++ + + + D+ D + N+ + L G
Sbjct: 312 IEAIATTIIA-HLTVEALDFREKALYIATMTRRVVMAMHNPKMVDDRDYVGNKRLELAGQ 370
Query: 327 LITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETML 386
LI++ ++ + + K I ++ + ++ L +I S I + + +
Sbjct: 371 LISLLFEDLFKKFNNDFKLSIDKVLKKPNRAMEYDALLSINV-----HSNNITSGLNRAI 425
Query: 387 KTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLLPES 445
TG + + +RAG T RL+++ + + + F R S R L P
Sbjct: 426 STGNWSLKRFK--MERAGVTHVLSRLSYISALGMMTRI--SSQFEKSRKVSGPRALQPSQ 481
Query: 446 WGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSL 505
+G LC TP+GE CGL+ ++ + + D IR L ++GV I
Sbjct: 482 FGMLCTADTPEGEACGLVKNLALMTHITTD-DEEEPIRK--------LCYVLGVEPI--- 529
Query: 506 PKLVKSGPPAV-LSVLLDGRVVGV--IPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVP 562
L+ S + V L+G ++G PS+ + + R KVS ++
Sbjct: 530 -SLLDSASLHLNYGVYLNGTLIGTTKFPSNFVSRFRFLRRTGKVSE-----------FIS 577
Query: 563 LSLGGAYPGLYLFTSPPKFVRPVRNISLPSE--ESQNIELIGPFEQVF---MEIRCPDGG 617
+ + +++ T + RP+ + E+++++ + E VF +++ +
Sbjct: 578 IYTNDHHNAVHIATDGGRICRPLIIVKDGKSMVEAEHLKRLLSGELVFDDFLKLGLVEYL 637
Query: 618 DGGRRN-----------AFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQT 666
D N TH EI P +L VA L PY HNQSPRN YQC M KQ
Sbjct: 638 DVNEENDSYIALYEKDITHDITHLEIEPFTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQA 697
Query: 667 MGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMED 726
+G R D LY + PQ P+V+T T D+ P G NA VAV++Y+GYD+ED
Sbjct: 698 IGAIAYNQFKRIDTLLYLMIYPQQPMVKTKTIELIDYDKLPAGQNATVAVMSYSGYDIED 757
Query: 727 AMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSL--HSVIDSDGL 784
A++LNKSS+DRG + + T L N R +++ +++ H + DGL
Sbjct: 758 ALVLNKSSIDRGFGRCETRRKTTTVLKKYPNHTKDALCGMRVDENGEAIWQHESLGPDGL 817
Query: 785 PYVGQMIHPGEPYC--SIYDKTTNSWRTNSRKGSESVFVDYVA--------VDMKNSKNL 834
VG I G+ Y S+ +++++ N + E+ + Y A V M S N
Sbjct: 818 GEVGLKIRSGQIYINKSVPVQSSDAMAVNQAQYRETPVI-YRAPELSIIDQVMMSTSDND 876
Query: 835 PQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPS 894
+ R R P +GDKFSSRHGQKGVC + DMPF+ G+ PD+I+NPH FPS
Sbjct: 877 QDLIKVLLRQNRRPELGDKFSSRHGQKGVCGIIVQQEDMPFND-QGICPDIIMNPHGFPS 935
Query: 895 RMTIAMLLESVAAK 908
RMT+ ++E ++ K
Sbjct: 936 RMTVGKMIELISGK 949
>gi|392577194|gb|EIW70323.1| hypothetical protein TREMEDRAFT_29095 [Tremella mesenterica DSM
1558]
Length = 1128
Score = 284 bits (727), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 250/918 (27%), Positives = 405/918 (44%), Gaps = 118/918 (12%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR ISY ++ D+E+ Y D ++ G+ PVML++ CHL+G ++L +
Sbjct: 100 CRLRDISYAAEIRVDIEYTYEDKLKK--QKGILIGKLPVMLRSDLCHLKGKSERELARMG 157
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
E + GGYF++ G E+V IL ++ + + RD ++G AV+ C
Sbjct: 158 ECPKDPGGYFVVKGTEKV----ILVQEQLSKNRI-IVMRDPKDG----AVIAECTSSTHD 208
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
V Y++ + RL + L+P+ + +KA+ T D EI L C DE+Y++
Sbjct: 209 RVVKT--YVITKNKRLYLRHNSFKELIPIVVAMKAMGVTADKEII-QLICGSDERYQEAF 265
Query: 218 GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIG-------------EHFQPVIDGLQS 264
G L E L + T QC + IG + P +Q+
Sbjct: 266 GPS------------LEEASRLKVYTAKQCAEWIGLRVSPGQEKEDRGQKLAPSEVAMQA 313
Query: 265 ESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLP 324
+ + ++R+ F K L M +++ + D+ D + N+ + L
Sbjct: 314 LAAMVLGHVLVRNMFF------RPKCIYLATMARRVLMASIDEKMVDDRDYVGNKRLELA 367
Query: 325 GHLITIYLKEKLE----DWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGT 380
G L+++ ++ + D R+ K++ E N D N ++ +N I +
Sbjct: 368 GQLLSLLFEDSFKTYNSDLRRRMDKIL--EKPNRATPLDASN------ILAQN-GDSITS 418
Query: 381 SIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VR 439
+ + TG + + +RAG T RL+F+ + + + F R S R
Sbjct: 419 AFVRSISTGNWSLKRFH--VERAGVTHVLSRLSFIAALGMMTRI--SSQFEKTRKVSGPR 474
Query: 440 KLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFS-KMRTSILRVLIG 498
L P WG LCP TP+GE CGL+ ++ + + G + D++ + G
Sbjct: 475 ALQPSQWGVLCPSDTPEGEACGLVKNLALMTHITTDV-PEGPLVDYAFTYGAQDINTFTG 533
Query: 499 VGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEV 558
VGM V + ++G ++G+ ++ +K V R+L+ +A
Sbjct: 534 VGMYGR----------GVYLIQINGSLIGL--TNHPKKFVQTWRKLRRAARFS------- 574
Query: 559 GYVPLSLGGAYPGLYLFTSPPKFVRPVRNI--SLPSEESQNIELIGPFEQVF---MEIRC 613
+V + + + +Y+ + + RP+ + P S++I L+ + F +
Sbjct: 575 EFVSIYMNHHHKIIYIASDGGRICRPMIIVENGRPRVTSEHIRLLKEGKVTFDHFLRSGL 634
Query: 614 PDGGDGGRRN-----------AFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQM 662
+ D N TH EI P +L VA L PY HNQSPRN YQC M
Sbjct: 635 VEYLDVNEENDSLIACYEHEIEEGTTHLEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAM 694
Query: 663 AKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGY 722
KQ +G R D LY + PQ P+V+T T D+ P G NA VAV++++GY
Sbjct: 695 GKQAIGAIGYNQLNRIDTLLYLMTYPQQPMVKTKTIELIEYDKLPAGQNATVAVMSFSGY 754
Query: 723 DMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSD 782
D+EDA+ILNK+SVDRG + + +TI + N ++ SV +D
Sbjct: 755 DIEDALILNKASVDRGFGRCHVLKKQTIPMRHFQNGTSERTAYPSDPLRPEAYASVDKAD 814
Query: 783 GLPYVGQMIHPGEPYCSIYDKTTNSWRTN------------SRKGSESVFVDYVAVDMKN 830
G+ G ++ G+ ++ +T R + K E V +D V +
Sbjct: 815 GVTSPGSTVYQGD--VLVHRETPIDTRGPMTQAAVFKATPITHKTPEPVQIDKVMLTEGE 872
Query: 831 SKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPH 890
L I R TR P +GDKFSSRHGQKGVC + P DMPF+ G+ PD+I+NPH
Sbjct: 873 DSPL---LKILTRQTRQPELGDKFSSRHGQKGVCGLIVPQTDMPFND-QGICPDIIMNPH 928
Query: 891 AFPSRMTIAMLLESVAAK 908
FPSRMT+ ++E +A K
Sbjct: 929 GFPSRMTVGKMIELLAGK 946
>gi|365762885|gb|EHN04417.1| Ret1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 1149
Score = 284 bits (727), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 264/981 (26%), Positives = 428/981 (43%), Gaps = 147/981 (14%)
Query: 9 FEPLRELVRHHIESFDYMLDEGLSEMFD-------------------------------- 36
F ++ LV+ H++SF+Y +D L ++
Sbjct: 51 FLKVKGLVKQHLDSFNYFVDTDLKKIIKANQLILSDVDPEFYLKYVDIRVGKKSSSSTKD 110
Query: 37 ------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADS 90
CR ++Y+ + D+E Y + ++ + G+ P+ML++ +C L AD
Sbjct: 111 YLTPPHECRLRDMTYSAPIYVDIE--YTRGRNIIMHKDVEIGRMPIMLRSNKCILYDADE 168
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
K+ L E + GGYFI+NG E+V +++ +Q ++ + D ++G +V
Sbjct: 169 SKMAKLNECPLDPGGYFIVNGTEKV---ILVQEQLSKNRIIVEA--DEKKGIVQASVTSS 223
Query: 151 C-VRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY 209
RK ++ V K NG + L +E +P+ IVLKA +DLEI L C
Sbjct: 224 THERKSKTYVITK-----NGKIYLKHNSIAEE--IPIAIVLKACGILSDLEIM-QLVCGN 275
Query: 210 DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPV----IDGLQSE 265
D Y+ + + L E L + T+ Q L++IG + + + LQ E
Sbjct: 276 DSSYQ------------DIFAVNLEESSKLDIYTQQQALEYIGAKVKTMRRQKLTILQ-E 322
Query: 266 SYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPG 325
A+A TVI ++ V D +K + M +++ + + + D+ D + N+ + L G
Sbjct: 323 GIEAIATTVIA-HLTVEALDFREKALYIAMMTRRVVMAMYNPKMIDDRDYVGNKRLELAG 381
Query: 326 HLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETM 385
LI++ ++ + + K I ++ + ++ L +I S I + +
Sbjct: 382 QLISLLFEDLFKKFNNDFKLSIDKVLKKPNRAMEYDALLSINV-----HSNNITSGLNRA 436
Query: 386 LKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLLPE 444
+ TG + + +RAG T RL+++ + + + F R S R L P
Sbjct: 437 ISTGNWSLKRFK--MERAGVTHVLSRLSYISALGMMTRI--SSQFEKSRKVSGPRALQPS 492
Query: 445 SWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPS 504
+G LC TP+GE CGJ+ ++ + + D + L ++GV I
Sbjct: 493 QFGMLCTADTPEGEACGJVKNLALMTHITT---------DDEEEPIKKLCYVLGVEDIT- 542
Query: 505 LPKLVKSGPPAV-LSVLLDGRVVGVI--PSSEIEKVVAHLRRL-KVSAASVIPDDLEVGY 560
L+ S + V L+G ++G I P+ + + HLRR KVS +
Sbjct: 543 ---LIDSASLHLNYGVYLNGTLIGSIRFPTKFVTQF-RHLRRTGKVSE-----------F 587
Query: 561 VPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFE-----QVFMEIRCPD 615
+ + +++ T + RP+ +S ++I L + F+++ +
Sbjct: 588 ISIYSNSHQMAVHIATDGGRICRPLIIVSDGQSRVKDIHLRKLLDGELDFDDFLKLGLVE 647
Query: 616 GGDGGRRN----------AFPA-THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAK 664
D N P+ TH EI P +L VA L PY HNQSPRN YQC M K
Sbjct: 648 YLDVNEENDSYIALYEKDIVPSMTHLEIEPFTILGXVAGLIPYPHHNQSPRNTYQCAMGK 707
Query: 665 QTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDM 724
Q +G R D LY + PQ P+V+T T D+ P G NA VAV++Y+GYD+
Sbjct: 708 QAIGAIAYNQFKRIDTLLYLMTYPQQPMVKTKTIELIDYDKLPAGQNATVAVMSYSGYDI 767
Query: 725 EDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDR--GQKLFRRNKDAKSLHSVIDSD 782
EDA++LNKSS+DRG + + T L N G N D H + D
Sbjct: 768 EDALVLNKSSIDRGFGRCETRRKTTTVLKRYANHTQDIIGGMRVDENGDPIWQHQSLGPD 827
Query: 783 GLPYVGQMIHPGEPYCSIYDKTTNSWRTNSR---------------KGSESVFVDYVAVD 827
GL VG + G+ Y + T ++ N +G E +D V
Sbjct: 828 GLGEVGMKVQSGQIYINKSVPTNSADAPNPNNVNVQTQYREAPVIYRGPEPSHIDQVM-- 885
Query: 828 MKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLII 887
M S N + R R P +GDKFSSRHGQKGVC + DMPF+ G+ PD+I+
Sbjct: 886 MSVSDNDQALIKVLLRQNRRPELGDKFSSRHGQKGVCGIIVKQEDMPFND-QGIVPDIIM 944
Query: 888 NPHAFPSRMTIAMLLESVAAK 908
NPH FPSRMT+ ++E ++ K
Sbjct: 945 NPHGFPSRMTVGKMIELISGK 965
>gi|401623550|gb|EJS41646.1| ret1p [Saccharomyces arboricola H-6]
Length = 1149
Score = 284 bits (726), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 262/980 (26%), Positives = 431/980 (43%), Gaps = 145/980 (14%)
Query: 9 FEPLRELVRHHIESFDYMLDEGLSEMFD-------------------------------- 36
F ++ LV+ H++SF+Y +D L ++
Sbjct: 51 FLKVKGLVKQHLDSFNYFVDTDLKKIIKANQLILSDVDPEFYLKYVDIRVGKKSSSSTKD 110
Query: 37 ------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADS 90
CR ++Y+ + D+E Y + ++ + G+ P+ML++ +C L AD
Sbjct: 111 YLTPPHECRLRDMTYSAPIYVDIE--YTRGRNIIMHKDVEIGRMPIMLRSNKCILYDADE 168
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
K+ L E + GGYFI+NG E+V +++ +Q ++ + D ++G +V
Sbjct: 169 SKMAKLNECPLDPGGYFIVNGTEKV---ILVQEQLSKNRIIVEA--DEKKGIVQASVTSS 223
Query: 151 C-VRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY 209
RK ++ V K NG + L +E +P+ +VLKA +DLEI L C
Sbjct: 224 THERKSKTYVITK-----NGKIYLKHNSIAEE--IPIAVVLKAGGIVSDLEIM-QLVCGN 275
Query: 210 DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPV----IDGLQSE 265
D Y+ + + L E L + T+ Q L++IG + + + LQ E
Sbjct: 276 DSSYQ------------DIFAVNLEESSKLDIYTQQQALEYIGAKVKTMRRQKLSILQ-E 322
Query: 266 SYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPG 325
A+A TVI ++ V D +K + M +++ + + + D+ D + N+ + L G
Sbjct: 323 GIEAIATTVIA-HLTVEALDFREKALYIAMMTRRVVMAMYNPKMIDDRDYVGNKRLELAG 381
Query: 326 HLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETM 385
LI++ ++ + + K I ++ + ++ L +I S I + +
Sbjct: 382 QLISLLFEDLFKKFNNDFKLSIDKVLKKPNRAMEYDALLSINV-----HSNNITSGLNRA 436
Query: 386 LKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLLPE 444
+ TG + + +RAG T RL+++ + + + F R S R L P
Sbjct: 437 ISTGNWSLKRFK--MERAGVTHVLSRLSYISALGMMTRI--SSQFEKSRKVSGPRALQPS 492
Query: 445 SWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPS 504
+G LC TP+GE CGL+ ++ + + D + L ++GV I
Sbjct: 493 QFGMLCTADTPEGEACGLVKNLALMTHITT---------DDEEEPIKKLCYVLGVEDIT- 542
Query: 505 LPKLVKSGPPAV-LSVLLDGRVVGVI--PSSEIEKVVAHLRRLKVSAASVIPDDLEVGYV 561
L+ S + V L+G +VG I P+ K V RRL+ + ++
Sbjct: 543 ---LIDSASLHLNYGVYLNGTLVGSIRFPT----KFVTQFRRLRRTGKVS-------EFI 588
Query: 562 PLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFE-----QVFMEIRCPDG 616
+ +++ T + RP+ +S ++ L E F+++ +
Sbjct: 589 SIYSNSHQMAVHIATDGGRICRPLIIVSGGQSRVKDTHLRQLLEGKLDFDDFLKLGLVEY 648
Query: 617 GDGGRRN----------AFPA-THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQ 665
D N P+ TH EI P +L VA L PY HNQSPRN YQC M KQ
Sbjct: 649 LDVNEENDSYIALYEKDIIPSMTHLEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQ 708
Query: 666 TMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDME 725
+G R D LY + PQ P+V+T T D+ P G NA VAV++Y+GYD+E
Sbjct: 709 AIGAIAYNQFKRIDTLLYLMTYPQQPMVKTKTIELIDYDKLPAGQNATVAVMSYSGYDIE 768
Query: 726 DAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSL--HSVIDSDG 783
DA++LNKSS+DRG + + T L N R +++ + + H + DG
Sbjct: 769 DALVLNKSSIDRGFGRCETRRKTTTVLKRYANHTQDIIGGMRVDENGEPIWQHQSLGPDG 828
Query: 784 LPYVGQMIHPGEPYC--SIYDKTTNSWRTNS-------------RKGSESVFVDYVAVDM 828
L VG + G+ Y S+ +T++ N+ +G E +D V M
Sbjct: 829 LGEVGMKVKSGQIYINKSVPTNSTDAPNPNNVNVQTQYREAPVIYRGPEPSHIDQVM--M 886
Query: 829 KNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIIN 888
S N + R R P +GDKFSSRHGQKGVC + DMPF+ G+ PD+I+N
Sbjct: 887 SVSDNDQALIKVLLRQNRRPELGDKFSSRHGQKGVCGIIVKQEDMPFND-QGIVPDIIMN 945
Query: 889 PHAFPSRMTIAMLLESVAAK 908
PH FPSRMT+ ++E ++ K
Sbjct: 946 PHGFPSRMTVGKMIELISGK 965
>gi|366997769|ref|XP_003683621.1| hypothetical protein TPHA_0A01020 [Tetrapisispora phaffii CBS 4417]
gi|357521916|emb|CCE61187.1| hypothetical protein TPHA_0A01020 [Tetrapisispora phaffii CBS 4417]
Length = 1142
Score = 284 bits (726), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 265/976 (27%), Positives = 437/976 (44%), Gaps = 141/976 (14%)
Query: 9 FEPLRELVRHHIESFDYMLDEGLSEMFD-------------------------------- 36
F ++ LV+ H++SF+Y +D+ L ++ +
Sbjct: 48 FLKVKGLVKQHLDSFNYFVDKDLKKIIEANQVILSDVDPEFYLKYVDIRIGEKSTGSKEK 107
Query: 37 -----HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQ 91
CR ++Y+ + D+E Y + ++ + G+ P+ML++ +C L GAD +
Sbjct: 108 LVPPHECRLRDMTYSAPIYVDIE--YTRGRNIIMHKDVEIGRMPIMLRSNKCILNGADQK 165
Query: 92 KLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRC 151
+ L E + GGYFI+NG E+ VIL ++ S R E K++V
Sbjct: 166 VMAKLNECPLDPGGYFIVNGTEK----VILVQEQL------SKNRIIVEADEKKSIVQAS 215
Query: 152 VRKDQSSVTLKLYYLL-NGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYD 210
V K Y + NG + L +E +P+ I+LKA +DLEI L C D
Sbjct: 216 VTSSTHERKSKTYVVTKNGKIYLKHNSIAEE--VPIAIILKACGIVSDLEIM-QLVCGND 272
Query: 211 EKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPV----IDGLQSES 266
Y+ + I L E L+++T+ Q L++IG + + + LQ E
Sbjct: 273 SSYQ------------DIFAINLEEAVKLNISTQQQALEYIGSKVKTIRRQKLSILQ-EG 319
Query: 267 YYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGH 326
A+A TVI ++ V D +K + M +++ +++ + D+ D + N+ + L G
Sbjct: 320 IEAIATTVIA-HLTVEALDFREKALYIAMMTRRVVMAIENPKMVDDRDYVGNKRLELAGQ 378
Query: 327 LITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETML 386
LI++ ++ + + K I ++ + ++ L +I S I + + +
Sbjct: 379 LISLLFEDLFKKFNSDFKASIDKVLKKPNRAMEYDALLSINV-----HSNNITSGLNRAI 433
Query: 387 KTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLLPES 445
TG + + +RAG T RL+++ + + + F R S R L P
Sbjct: 434 STGNWSLKRF--KMERAGVTHVLSRLSYISALGMMTRI--SSQFEKSRKVSGPRALQPSQ 489
Query: 446 WGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSL 505
+G LC TP+GE CGL+ ++ + + D I+ M +GV I
Sbjct: 490 FGMLCTADTPEGEACGLVKNLALMTHITT-DDEEDPIKKLCYM--------LGVEDIT-- 538
Query: 506 PKLVKSGPPAV-LSVLLDGRVVGV--IPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVP 562
L+ S + V L+G ++G P + + + R +VS +V
Sbjct: 539 --LIDSASLHLNYGVHLNGTLIGTTRFPLNFVSQFRQLRRTGRVSE-----------FVS 585
Query: 563 LSLGGAYPGLYLFTSPPKFVRPVRNIS-----LPSEESQNIELIGPFE-QVFMEIRCPDG 616
+ +++ T + RP+ +S + +E + + L G + F+++ +
Sbjct: 586 IYTNSHQQAVHIATDGGRICRPLIIVSNGKSHVKAEHLKEL-LEGKLDFDDFLKLGLVEY 644
Query: 617 GDGGRRN-AFPATHE----------EIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQ 665
D N F A +E EI P +L VA L PY HNQSPRN YQC M KQ
Sbjct: 645 LDVNEENDCFIALYEKDLSNRSTHLEIEPFTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQ 704
Query: 666 TMGFSVQALKF-RADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDM 724
+G ++ +F R D LY + PQ P+V+T T D+ P G NA VAV++Y+GYD+
Sbjct: 705 AIG-AIGYNQFKRIDTLLYLMIYPQQPMVKTKTIELIDYDKLPAGQNATVAVMSYSGYDI 763
Query: 725 EDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDR--GQKLFRRNKDAKSLHSVIDSD 782
EDA++LNK+S+DRG + + T L N G N + H + D
Sbjct: 764 EDALVLNKASIDRGFGRCETRRKTTTVLKRYPNHTQDIIGGMRVDENNNPIWQHEALGPD 823
Query: 783 GLPYVGQMIHPGEPYC--SIYDKTTNSWRTNSRKGSESVFVDYVA--------VDMKNSK 832
GL VG ++ G+ Y S+ ++S T+++ + V Y + V M S+
Sbjct: 824 GLGEVGVKVNSGQIYINKSVPTNASDSVLTSTQSQYKETPVVYRSPVPSHIDQVMMSVSE 883
Query: 833 NLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAF 892
N + R R P +GDKFSSRHGQKGVC + DMPF+ G+ PD+I+NPH F
Sbjct: 884 NDQALIKVLLRQNRRPELGDKFSSRHGQKGVCGIIVNHEDMPFND-EGISPDIIMNPHGF 942
Query: 893 PSRMTIAMLLESVAAK 908
PSRMT+ ++E V+ K
Sbjct: 943 PSRMTVGKMIELVSGK 958
>gi|349581364|dbj|GAA26522.1| K7_Ret1p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 1149
Score = 284 bits (726), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 263/981 (26%), Positives = 431/981 (43%), Gaps = 147/981 (14%)
Query: 9 FEPLRELVRHHIESFDYMLDEGLSEMFD-------------------------------- 36
F ++ LV+ H++SF+Y +D L ++
Sbjct: 51 FLKVKGLVKQHLDSFNYFVDTDLKKIIKANQLILSDVDPEFYLKYVDIRVGKKSSSSTKD 110
Query: 37 ------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADS 90
CR ++Y+ + D+E Y + ++ + G+ P+ML++ +C L AD
Sbjct: 111 YLTPPHECRLRDMTYSAPIYVDIE--YTRGRNIIMHKDVEIGRMPIMLRSNKCILYDADE 168
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
K+ L E + GGYFI+NG E+V +++ +Q ++ + D ++G +V
Sbjct: 169 SKMAKLNECPLDPGGYFIVNGTEKV---ILVQEQLSKNRIIVEA--DEKKGIVQASVTSS 223
Query: 151 C-VRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY 209
RK ++ V K NG + L +E +P+ IVLKA +DLEI L C
Sbjct: 224 THERKSKTYVITK-----NGKIYLKHNSIAEE--IPIAIVLKACGILSDLEIM-QLVCGN 275
Query: 210 DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPV----IDGLQSE 265
D Y+ + + L E L + T+ Q L++IG + + + LQ E
Sbjct: 276 DSSYQ------------DIFAVNLEESSKLDIYTQQQALEYIGAKVKTMRRQKLTILQ-E 322
Query: 266 SYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPG 325
A+A TVI ++ V D +K + M +++ + + + D+ D + N+ + L G
Sbjct: 323 GIEAIATTVIA-HLTVEALDFREKALYIAMMTRRVVMAMYNPKMIDDRDYVGNKRLELAG 381
Query: 326 HLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETM 385
LI++ ++ + + K I ++ + ++ L +I S I + +
Sbjct: 382 QLISLLFEDLFKKFNNDFKLSIDKVLKKPNRAMEYDALLSINV-----HSNNITSGLNRA 436
Query: 386 LKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLLPE 444
+ TG + + +RAG T RL+++ + + + F R S R L P
Sbjct: 437 ISTGNWSLKRFK--MERAGVTHVLSRLSYISALGMMTRI--SSQFEKSRKVSGPRALQPS 492
Query: 445 SWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPS 504
+G LC TP+GE CGL+ ++ + + D + L ++GV I
Sbjct: 493 QFGMLCTADTPEGEACGLVKNLALMTHITT---------DDEEEPIKKLCYVLGVEDIT- 542
Query: 505 LPKLVKSGPPAV-LSVLLDGRVVGVI--PSSEIEKVVAHLRRL-KVSAASVIPDDLEVGY 560
L+ S + V L+G ++G I P+ + + HLRR KVS +
Sbjct: 543 ---LIDSASLHLNYGVYLNGTLIGSIRFPTKFVTQF-RHLRRTGKVSE-----------F 587
Query: 561 VPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFE-----QVFMEIRCPD 615
+ + +++ T + RP+ +S ++I L + F+++ +
Sbjct: 588 ISIYSNSHQMAVHIATDGGRICRPLIIVSDGQSRVKDIHLRKLLDGELDFDDFLKLGLVE 647
Query: 616 GGDGGRRN----------AFPA-THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAK 664
D N P+ TH EI P +L VA L PY HNQSPRN YQC M K
Sbjct: 648 YLDVNEENDSYIALYEKDIVPSMTHLEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGK 707
Query: 665 QTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDM 724
Q +G R D LY + PQ P+V+T T D+ P G NA VAV++Y+GYD+
Sbjct: 708 QAIGAIAYNQFKRIDTLLYLMTYPQQPMVKTKTIELIDYDKLPAGQNATVAVMSYSGYDI 767
Query: 725 EDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSL--HSVIDSD 782
EDA++LNKSS+DRG + + T L N R +++ + + H + D
Sbjct: 768 EDALVLNKSSIDRGFGRCETRRKTTTVLKRYANHTQDIIGGMRVDENGEPIWQHQSLGPD 827
Query: 783 GLPYVGQMIHPGEPYCSIYDKTTNSWRTNSR---------------KGSESVFVDYVAVD 827
GL VG + G+ Y + T ++ N +G E +D V
Sbjct: 828 GLGEVGMKVQSGQIYINKSVPTNSADAPNPNNVNVQTQYREAPVIYRGPEPSHIDQVM-- 885
Query: 828 MKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLII 887
M S N + R R P +GDKFSSRHGQKGVC + DMPF+ G+ PD+I+
Sbjct: 886 MSVSDNDQALIKVLLRQNRRPELGDKFSSRHGQKGVCGIIVKQEDMPFND-QGIVPDIIM 944
Query: 888 NPHAFPSRMTIAMLLESVAAK 908
NPH FPSRMT+ ++E ++ K
Sbjct: 945 NPHGFPSRMTVGKMIELISGK 965
>gi|254573076|ref|XP_002493647.1| Second-largest subunit of RNA polymerase III [Komagataella pastoris
GS115]
gi|238033446|emb|CAY71468.1| Second-largest subunit of RNA polymerase III [Komagataella pastoris
GS115]
gi|328354525|emb|CCA40922.1| DNA-directed RNA polymerase II subunit B [Komagataella pastoris CBS
7435]
Length = 1158
Score = 283 bits (725), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 262/1000 (26%), Positives = 429/1000 (42%), Gaps = 174/1000 (17%)
Query: 9 FEPLRELVRHHIESFDYMLDEGLSEMFD-------------------------------- 36
F ++ LV+ H++SF+Y +D+ L ++
Sbjct: 51 FLQVKGLVKQHLDSFNYFVDKDLKKIIKANEKVLSDVDPEFYLKYLDIRVGYKSTEDLQK 110
Query: 37 ---------HCRQAKISYTGKLMADVEFQYLDAGSPVVRER-FNFGQFPVMLKTRRCHLQ 86
CR + +Y+ + DVE+ G ++ R G+ P+ML++ +C L+
Sbjct: 111 VKRNMIPPHQCRLSDTTYSAPIYVDVEYT---RGRKIIMHRDLEIGKMPIMLRSNKCILE 167
Query: 87 GADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKA 146
D ++ SL E + GGYFI+NG E+V IL ++ + + D+++
Sbjct: 168 SKDESQMASLCECPLDPGGYFIVNGTEKV----ILVQEQLSKNRIIVEADDKKQIVQASV 223
Query: 147 VVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLT 206
RK ++ V K N + L +E +P+ +VLKA +DLEI L
Sbjct: 224 TSSTHERKSKTYVVTK-----NNKIYLKHNSISEE--VPIVLVLKAAGIVSDLEIM-QLV 275
Query: 207 CCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID-GLQSE 265
C D Y+ + I E L + T+ L++IG+ + + G
Sbjct: 276 CGDDSTYQ------------DLFTINFEEAAKLDIHTQRDALEYIGKRVKTMRRLGAPKL 323
Query: 266 SYYAVAETVIRDYIFVHLNDNNDKFN----LLIFMLQKLFSLVDHTSVSDNPDSLQNQEI 321
S Y I + I H++ + F L M +++ + + ++ D+ D + N+ +
Sbjct: 324 SIYQEGVEAIANTIVAHISVEDLNFREKAIYLAIMTRRVVMAMHNPTMIDDRDYVGNKRL 383
Query: 322 LLPGHLITIYLKEKLEDWLRKGKKLIQDEIE------NNGKKFDFFNLANIKKVMEKNPS 375
L G L+++ ED +K + I+ N +FD N+ S
Sbjct: 384 ELAGQLMSLLF----EDLFKKFNSDFKANIDKILKKPNRASEFDALLSINVH-------S 432
Query: 376 KQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRT 435
I T I + TG + + +RAG T RL+++ + + + F R
Sbjct: 433 NNITTGINRAISTGNWSLKRFK--MERAGVTHVLSRLSYISALGMMTRI--SSQFEKSRK 488
Query: 436 TS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILR 494
S R L P +G LC TP+GE CGL+ ++ + + D +R
Sbjct: 489 VSGPRALQPSQFGMLCTSDTPEGEACGLVKNLALMTHITTD-DEEEPVRKIC-------- 539
Query: 495 VLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVI--PSSEIEKVVAHLRRLKVSAASVI 552
L+G I + V S + V L+G ++GVI P+ + K R KVSA
Sbjct: 540 YLLGAEDIKIVDSSVISSR-SNFGVYLNGTMIGVIRYPTVFVTKFRKLRRSGKVSA---- 594
Query: 553 PDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNI--SLPSEESQNIELIGPFE---QV 607
++ + + + ++L + RP+ + + E+ +++ + E
Sbjct: 595 -------FISIYINSHHKAVHLAADGGRICRPLIIVENGVSKVEAHHLQKLKDGEWQFDS 647
Query: 608 FMEIRCPDGGDGGRRN-----------AFPATHEEIHPTGMLSVVANLTPYSDHNQSPRN 656
F+ + D N TH EI P +L VA L PY HNQSPRN
Sbjct: 648 FLTNGLVEYLDVNEENDSLIALYEKDIKNYTTHLEIEPFTVLGAVAGLIPYPHHNQSPRN 707
Query: 657 MYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAV 716
YQC M KQ +G R D LY + PQ P+V+T T G D+ P G NA VAV
Sbjct: 708 TYQCAMGKQAIGAIGYNQFNRIDTLLYLMVYPQQPMVKTKTIELIGYDKLPAGQNATVAV 767
Query: 717 LAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKV----------DRGQKLF 766
++Y+GYD+EDA++LNK+S+DRG Q+++ T L N D+G+ +F
Sbjct: 768 MSYSGYDIEDALVLNKASIDRGFGRCQVFRKNTTLLKRYPNHTKDILGGMSVNDQGEPIF 827
Query: 767 RRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYC----------SIYDKTTNSWRTNSR--- 813
+ H + DGL VG + G+ Y SI +T + + +
Sbjct: 828 Q--------HRSLGPDGLGEVGLPLESGQVYVNKFVPINSEESIIGQTPDDSQRKEQHRE 879
Query: 814 -----KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLW 868
+G E ++D + + + + + KA R TR P +GDKFSSRHGQKGVC +
Sbjct: 880 TPMVYRGPEPSYIDQMMMSLGENDQVLVKA--LLRQTRRPELGDKFSSRHGQKGVCGIIV 937
Query: 869 PDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
D+PF+ G+ PD+I+NPH FPSRMT+ ++E ++ K
Sbjct: 938 QQEDLPFND-DGISPDIIMNPHGFPSRMTVGKMIELISGK 976
>gi|50546993|ref|XP_500966.1| YALI0B16258p [Yarrowia lipolytica]
gi|49646832|emb|CAG83219.1| YALI0B16258p [Yarrowia lipolytica CLIB122]
Length = 1169
Score = 283 bits (725), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 264/1009 (26%), Positives = 442/1009 (43%), Gaps = 185/1009 (18%)
Query: 9 FEPLRELVRHHIESFDYMLDEGLSEM------------------------------FD-- 36
F ++ LV+ H++SF+Y +D L ++ FD
Sbjct: 55 FLKVKGLVKQHLDSFNYFVDVDLKKILAANQMVLSDVDPEFYLKYKDIRVGKPGIKFDDK 114
Query: 37 ---------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQG 87
CR ++Y + D+E Y V++ G+ P+ML++ +CHLQ
Sbjct: 115 NDDNAIFPHECRLRDMTYAAPIYVDIE--YTKERKIVIQRNLEIGKMPIMLRSSKCHLQD 172
Query: 88 ADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAV 147
+K+ ++ E + GGYFI+NG E+V +++ +Q ++ + D ++G +V
Sbjct: 173 QTEEKMAAMGECPLDPGGYFIVNGTEKV---ILVQEQLSKNRIIVEA--DEKKGVVQASV 227
Query: 148 VIRC-VRKDQSSVTLK--LYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNH 204
R+ ++ V K YL N S+ +P+ ++LKA DLEI
Sbjct: 228 TSSTHERRSKTYVLTKNDKIYLKNNSIVED---------IPIVLILKAAGLVTDLEIMQA 278
Query: 205 LTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQS 264
+ A +P+ E + E L + T+ Q L+++G +
Sbjct: 279 V-------------AGQNPVYQEIFAVNFEECSKLGVFTQRQALEYLGSKVKTSRRSNVK 325
Query: 265 ESYYAVAETVIRDYIFVHLNDNNDKFN----LLIFMLQKLFSLVDHTSVSDNPDSLQNQE 320
++Y + I H++ NN F + M +++ + + D+ D + N+
Sbjct: 326 LTHYQEGLEAVATSIIAHISINNMDFTEKALYIAVMTRRVIMAMADPKMIDDRDYVGNKR 385
Query: 321 ILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGT 380
+ L G L+++ ED KKF+ ANI K++ K P++
Sbjct: 386 LELAGQLLSLLF----EDLF---------------KKFNSDFKANIDKIL-KRPNRASMF 425
Query: 381 SIETMLKTGRLATQTGLDL-------------QQRAGYTVQAERLNFLRFISFFRAVHRG 427
L+T R + +G++ +RAG T RL+++ + +
Sbjct: 426 DALLNLETHRGSITSGMNRAISTGNWSLKRFKMERAGVTHVLSRLSYISALGMMTRI--S 483
Query: 428 ASFAGLRTTS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFS 486
+ F R S R L P +G LC TP+GE CGL+ ++ + + D +R+
Sbjct: 484 SQFEKSRKVSGPRALQPSQFGMLCTSDTPEGEACGLVKNLALMTHITTD-DEEAPVRNLC 542
Query: 487 KMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGV--IPSSEIEKVVAHLRRL 544
+ + +IG + + V L+G ++G+ P+ + R
Sbjct: 543 YLLGAENISVIGGAELHA---------EGSFGVYLNGTLIGITKFPTKFVSSFRQFRRTG 593
Query: 545 KVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNIS--LPSEESQNIELIG 602
KVS ++ + + + +++ T + RP+ + P + ++++ +
Sbjct: 594 KVSE-----------FISIYINRHHAAVHIATDGGRICRPLIIVENEHPRVQVEHLKKLR 642
Query: 603 PFEQVF---MEIRCPDGGDGGRRN-AFPA----------THEEIHPTGMLSVVANLTPYS 648
E F ++ + D N +F A TH EI P +L VA L PY
Sbjct: 643 DGEMTFDDFLKQGLVEYLDVNEENDSFIALYENNINAETTHLEIEPFTVLGAVAGLIPYP 702
Query: 649 DHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPT 708
HNQSPRN YQC M KQ +G R D LY + PQ P+V+T T D+ P
Sbjct: 703 HHNQSPRNTYQCAMGKQAIGAIAYNQLNRIDTLLYLMVYPQQPMVKTRTIELIDYDKLPA 762
Query: 709 GTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDL-----SDDGNKVDRGQ 763
G NA VAV++Y+GYD+EDA++LNKSS+DRG Q+ + T L SD +++D G
Sbjct: 763 GQNATVAVMSYSGYDIEDALVLNKSSIDRGFGRCQVLKKNTTVLKRYAGSDAVDRLD-GV 821
Query: 764 KLFRRN--KDAKSL-------HSVIDSDGLPYVGQMIHPGEPYC----------SIYDKT 804
K+ RR D S H V+ DGL VG+ + + Y S+ +++
Sbjct: 822 KMERRKCAWDPNSFEEVVTEQHEVLGPDGLGEVGKPVKNSQVYVNRCIPVNNSDSLLNQS 881
Query: 805 TNS---WRTN--SRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHG 859
T+S +R + +G E +D V V + + + K + R TR P +GDKFSSRHG
Sbjct: 882 TSSSTEYREAPVTYRGPEPSIIDKVMVSVTDKELYLIK--VLLRQTRRPELGDKFSSRHG 939
Query: 860 QKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
QKGVC + DMPFS +G+ PD+I+NPH FPSRMT+ ++E ++ K
Sbjct: 940 QKGVCGIIVNQEDMPFSD-SGVCPDIIMNPHGFPSRMTVGKMIELISGK 987
>gi|156839387|ref|XP_001643385.1| hypothetical protein Kpol_479p15 [Vanderwaltozyma polyspora DSM
70294]
gi|156113993|gb|EDO15527.1| hypothetical protein Kpol_479p15 [Vanderwaltozyma polyspora DSM
70294]
Length = 1139
Score = 283 bits (725), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 265/975 (27%), Positives = 428/975 (43%), Gaps = 138/975 (14%)
Query: 9 FEPLRELVRHHIESFDYMLDEGLSEMFD-------------------------------- 36
F ++ LV+ H++SF+Y +D L ++
Sbjct: 44 FLKVKGLVKQHLDSFNYFVDVDLKKIIKANQLILSDVDPEFYLKYVDIRIGQRSSSSSKD 103
Query: 37 ------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADS 90
CR ++Y+ + D+E Y + ++ + G+ P+ML++ +C L GAD
Sbjct: 104 YLTPPHECRLRDMTYSAPIYVDIE--YTRGRNIIMHKDVEIGRMPIMLRSNKCILNGADD 161
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
+ L E + GGYFI+NG E+V IL ++ + + +++E
Sbjct: 162 SMMAKLNECPLDPGGYFIVNGTEKV----ILVQEQLSKNRIIVEADEKKEIVQASVTSST 217
Query: 151 CVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYD 210
RK ++ V K NG + L +E +P+ IVLKA +DLEI L C D
Sbjct: 218 HERKSKTYVVTK-----NGKIYLKHNSIAEE--VPIAIVLKACGIISDLEIM-QLVCGND 269
Query: 211 EKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPV----IDGLQSES 266
Y+ + + L E ++ T+ Q L++IG + + + LQ E
Sbjct: 270 SSYQ------------DIFAVNLEEAAKYNIYTQRQALEYIGGKVKTIRRQKLSILQ-EG 316
Query: 267 YYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGH 326
A+A TVI ++ V D +K + M +++ + + + D+ D + N+ + L G
Sbjct: 317 IEAIATTVIA-HLTVEALDFREKALYVAMMARRVVMAMHNPKMVDDRDYVGNKRLELAGQ 375
Query: 327 LITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETML 386
LI++ ++ + + K I ++ + ++ L +I S I + + +
Sbjct: 376 LISLLFEDLFKKFNSDFKASIDKVLKKPNRAMEYDALLSINV-----HSNNITSGLNRAI 430
Query: 387 KTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLLPES 445
TG + + +RAG T RL+++ + + + F R S R L P
Sbjct: 431 STGNWSLKRFK--MERAGVTHVLSRLSYISALGMMTRI--SSQFEKSRKVSGPRALQPSQ 486
Query: 446 WGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSL 505
+G LC TP+GE CGL+ ++ + + D I++ L ++GV I
Sbjct: 487 FGMLCTADTPEGEACGLVKNLALMTHITTD-DEEEPIKN--------LCFVLGVENIC-- 535
Query: 506 PKLVKSGPPAV-LSVLLDGRVVGVI--PSSEIEKVVAHLRRL-KVSAASVIPDDLEVGYV 561
LV S + +V L+G ++G I P+ + + HLRR KVS ++
Sbjct: 536 --LVDSATLHLNYTVHLNGTLIGTIRFPARFVSQF-RHLRRTGKVSE-----------FI 581
Query: 562 PLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFE-----QVFMEIRCPDG 616
+ +++ T + RP+ ++ L E F+++ +
Sbjct: 582 SIYTNSHQRAVHIATDGGRICRPLIIVTAGKSHVNAEHLKELLEGKLVFDDFLKLGLVEY 641
Query: 617 GDGGRRN-AFPA----------THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQ 665
D N +F A TH EI P +L VA L PY HNQSPRN YQC M KQ
Sbjct: 642 LDVNEENDSFIALYEKDINENVTHMEIEPFTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQ 701
Query: 666 TMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDME 725
+G R D LY + PQ P+V+T T D+ P G NA VAV++Y+GYD+E
Sbjct: 702 AIGAIAYNQFKRIDTLLYLMIYPQQPMVKTKTIELIDYDKLPAGQNATVAVMSYSGYDIE 761
Query: 726 DAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSL--HSVIDSDG 783
DA++LNKSS+DRG + + T L N R +++ K + H + DG
Sbjct: 762 DALVLNKSSIDRGFGRCETRRKTTTVLKKYPNHTQDIIGGMRVDENGKPIWQHEPLGPDG 821
Query: 784 LPYVGQMIHPGEPYC--SIYDKTTNSWRTNSRKGSESVFVDYVA--------VDMKNSKN 833
L VG + G+ Y S+ + N++ + V Y A V M S N
Sbjct: 822 LGEVGVQVTSGQIYINKSVPTNSGEGVLANTQAQYKETPVIYRAPEPSRIDQVMMSVSDN 881
Query: 834 LPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFP 893
+ R R P +GDKFSSRHGQKGVC + DMPF+ G+ PD+I+NPH FP
Sbjct: 882 DQALIKVLLRQNRRPELGDKFSSRHGQKGVCGIIVNHEDMPFND-DGISPDIIMNPHGFP 940
Query: 894 SRMTIAMLLESVAAK 908
SRMT+ ++E V+ K
Sbjct: 941 SRMTVGKMIELVSGK 955
>gi|401889092|gb|EJT53032.1| DNA-directed RNA polymerase [Trichosporon asahii var. asahii CBS
2479]
Length = 1213
Score = 283 bits (725), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 251/927 (27%), Positives = 414/927 (44%), Gaps = 134/927 (14%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRER--FNFGQFPVMLKTRRCHLQGADSQKLVS 95
CR +Y+G + D+E+ + D +R++ + G P+ML++ CHL G + +L
Sbjct: 183 CRLTDNTYSGGIYVDIEYTHEDK----IRKQQGIHIGSLPIMLRSDLCHLAGKNDLELAR 238
Query: 96 LKEEAAEMGGYFILNGLERVF---------RSVIL--PKQNYPMSMVRSSFRDRREGYTD 144
+ E + GGYF++ G E+V R +++ PK++ + V SS DR
Sbjct: 239 MGECPLDPGGYFVVKGTEKVILVQEQLSKNRIIVMTDPKKDVTTAEVTSSTHDR------ 292
Query: 145 KAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNH 204
V++ Y+ + RL + +P+ I LKA+ T+D EI
Sbjct: 293 ---VVKT-------------YVTTKASRLYLRHSSFKEPIPIVIALKAMGVTSDKEIL-Q 335
Query: 205 LTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID---- 260
L C DEKY++ G + L E L + TR + L+ IG P +
Sbjct: 336 LVCGPDEKYQEAFG------------MSLEEAARLRVYTRREALEWIGARVSPTQEKEDR 383
Query: 261 -----------GLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSV 309
+Q+ + + +RD F K L M +++ + + ++
Sbjct: 384 SLGHKLTPTDMAMQALAAMVLGHVPVRDMNF------RPKAIYLATMSRRVLAAMLDENM 437
Query: 310 SDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKV 369
D+ D + N+ + L G L+++ ++ + + KK + +E + F + +
Sbjct: 438 VDDRDYVGNKRLELAGQLLSLLFEDSFKTFNSDLKKRMDKILEKKTRAGPF----DASTL 493
Query: 370 MEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGAS 429
+ I ++ + TG + + +RAG T RL+F+ + + +
Sbjct: 494 VRTGGGDIITSAFVRSISTGNWSLKRFH--VERAGVTHVLSRLSFIAALGMMTRIT--SQ 549
Query: 430 FAGLRTTS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKM 488
F R S R L P WG LCP TP+GE CGL+ ++ + + D +
Sbjct: 550 FEKTRKVSGPRALQPSQWGMLCPSDTPEGEACGLVKNLALMTHITT---------DVPED 600
Query: 489 RTSILRVLIGVGMI--PSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKV 546
L ++G I + +L + G V V ++G ++GV ++ K V R+L+
Sbjct: 601 PLIKLAFMLGAEDISLATGNELYRDG---VHLVQVNGNLIGV--TALPRKFVRTFRKLRR 655
Query: 547 SAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNI--SLPSEESQNIELIGPF 604
S + +V + + +Y+ + + RP+ + P S++++L+
Sbjct: 656 SGRTS-------EFVSIYINHHQRVIYIASDGGRICRPLIIVENGRPRVTSEHMQLLKAG 708
Query: 605 EQVF---MEIRCPDGGDGGRRN-AFPA----------THEEIHPTGMLSVVANLTPYSDH 650
+ F + + D N +F A TH EI P +L VA L PY H
Sbjct: 709 KVTFDHFLRSGLVEYLDVNEENDSFIACYESEITEDTTHLEIEPFTILGAVAGLIPYPHH 768
Query: 651 NQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGT 710
NQSPRN YQC M KQ +G R D LY + PQ P+V+T T G D P G
Sbjct: 769 NQSPRNTYQCAMGKQAIGAIAYNQLNRIDTLLYLMTYPQQPMVKTKTIELVGYDRLPAGQ 828
Query: 711 NAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNK 770
NA VAV++Y+GYD+EDA+I+N++S DRG + + +TI + N + ++
Sbjct: 829 NATVAVMSYSGYDIEDALIVNRASADRGFGRCHVLKKQTIPIRSFPNGTSERLAMLPPDQ 888
Query: 771 DAKSLHSVIDSDGLPYVGQMIHPGE-------PYCSIYDKTTNSWRTN--SRKGSESVFV 821
++ HS +D DGL G ++ G+ P + T ++ + K E +
Sbjct: 889 RPET-HSWLDQDGLVAPGSVVSQGDVLAARETPMDTRGPGPTVGFKATPVAHKLPEPTNI 947
Query: 822 DYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGM 881
D V V N Q I R TR P +GDKFSSRHGQKGVC + P DMPF+ G+
Sbjct: 948 DKVMVTDTEDGN--QLIKILTRQTRRPELGDKFSSRHGQKGVCGLIVPQQDMPFND-QGI 1004
Query: 882 RPDLIINPHAFPSRMTIAMLLESVAAK 908
PD+I+NPH FPSRMT+ ++E ++ K
Sbjct: 1005 CPDIIMNPHGFPSRMTVGKMIELLSGK 1031
>gi|323302937|gb|EGA56741.1| Ret1p [Saccharomyces cerevisiae FostersB]
Length = 1149
Score = 283 bits (724), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 263/981 (26%), Positives = 430/981 (43%), Gaps = 147/981 (14%)
Query: 9 FEPLRELVRHHIESFDYMLDEGLSEMFD-------------------------------- 36
F ++ LV+ H++SF+Y +D L ++
Sbjct: 51 FLKVKGLVKQHLDSFNYFVDTDLKKIIKANQLILSDVDPEFYLKYVDIRVGKKSSSSTKD 110
Query: 37 ------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADS 90
CR ++Y+ + D+E Y + ++ + G+ P+ML++ +C L AD
Sbjct: 111 YLTPPHECRLRDMTYSAPIYVDIE--YTRGRNIIMHKDVEIGRMPIMLRSNKCILYDADE 168
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
K+ L E + GGYFI+NG E+V +++ +Q ++ + D ++G +V
Sbjct: 169 SKMAKLNECPLDPGGYFIVNGTEKV---ILVQEQLSKNRIIVEA--DEKKGIVQASVTSS 223
Query: 151 C-VRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY 209
RK ++ V K NG + L +E +P+ IVLKA +DLEI L C
Sbjct: 224 THERKSKTYVITK-----NGKIYLKHNSIAEE--IPIAIVLKACGILSDLEIM-QLVCGN 275
Query: 210 DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPV----IDGLQSE 265
D Y+ + + L E L + T+ Q L++IG + + + LQ E
Sbjct: 276 DSSYQ------------DIFAVNLEESSKLDIYTQQQALEYIGAKVKTMRRQKLTILQ-E 322
Query: 266 SYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPG 325
A+A TVI ++ V D +K + M +++ + + + D+ D + N+ + L G
Sbjct: 323 GIEAIATTVIA-HLTVEALDFREKALYIAMMTRRVVMAMYNPKMIDDRDYVGNKRLELAG 381
Query: 326 HLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETM 385
LI++ ++ + + K I ++ + ++ L +I S I + +
Sbjct: 382 QLISLLFEDLFKKFNNDFKLSIDKVLKKPNRAMEYDALLSINV-----HSNNITSGLNRA 436
Query: 386 LKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLLPE 444
+ TG + + +RAG T RL+++ + + + F R S R L P
Sbjct: 437 ISTGNWSLKRFK--MERAGVTHVLSRLSYISALGMMTRI--SSQFEKSRKVSGPRALQPS 492
Query: 445 SWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPS 504
+G LC TP+GE CGL+ ++ + + D + L ++GV I
Sbjct: 493 QFGMLCTADTPEGEACGLVKNLALMTHITT---------DDEEEPIKKLCYVLGVEDIT- 542
Query: 505 LPKLVKSGPPAV-LSVLLDGRVVGVI--PSSEIEKVVAHLRRL-KVSAASVIPDDLEVGY 560
L+ S + V L+G ++G I P+ + + HLRR KVS +
Sbjct: 543 ---LIDSASLHLNYGVYLNGTLIGSIRFPTKFVTQF-RHLRRTGKVSE-----------F 587
Query: 561 VPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFE-----QVFMEIRCPD 615
+ + +++ T + RP+ +S ++I L + F+++ +
Sbjct: 588 ISIYSNSHQMAVHIATDGGRICRPLIIVSDGQSRVKDIHLRKLLDGELDFDDFLKLGLVE 647
Query: 616 GGDGGRRN----------AFPA-THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAK 664
D N P+ TH EI P +L VA L PY HNQSPRN YQC M K
Sbjct: 648 YLDVNEENDSYIALYEKDIVPSMTHLEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGK 707
Query: 665 QTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDM 724
Q +G R D LY + PQ P+V+T T D+ P G NA VAV++Y+GYD+
Sbjct: 708 QAIGAIAYNQFKRIDTLLYLMTYPQQPMVKTKTIELIDYDKLPAGQNATVAVMSYSGYDI 767
Query: 725 EDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSL--HSVIDSD 782
EDA++LNKSS+DRG + + T L N R +++ + H + D
Sbjct: 768 EDALVLNKSSIDRGFGRCETRRKTTTVLKRYANHTQDIIGGMRVDENGXPIWQHQSLGPD 827
Query: 783 GLPYVGQMIHPGEPYCSIYDKTTNSWRTNSR---------------KGSESVFVDYVAVD 827
GL VG + G+ Y + T ++ N +G E +D V
Sbjct: 828 GLGEVGMKVQSGQIYINKSVPTNSADAPNPNNVNVQTQYREAPVIYRGPEPSHIDQVM-- 885
Query: 828 MKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLII 887
M S N + R R P +GDKFSSRHGQKGVC + DMPF+ G+ PD+I+
Sbjct: 886 MSVSDNDQALIKVLLRQNRRPELGDKFSSRHGQKGVCGIIVKQEDMPFND-QGIVPDIIM 944
Query: 888 NPHAFPSRMTIAMLLESVAAK 908
NPH FPSRMT+ ++E ++ K
Sbjct: 945 NPHGFPSRMTVGKMIELISGK 965
>gi|164661167|ref|XP_001731706.1| hypothetical protein MGL_0974 [Malassezia globosa CBS 7966]
gi|159105607|gb|EDP44492.1| hypothetical protein MGL_0974 [Malassezia globosa CBS 7966]
Length = 1131
Score = 283 bits (724), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 270/1002 (26%), Positives = 419/1002 (41%), Gaps = 188/1002 (18%)
Query: 12 LRELVRHHIESFDYMLDEGLSEMF------------------------------------ 35
++ LV+ HI+SF+Y +D L +
Sbjct: 31 VKGLVKQHIDSFNYFVDVDLKNILRANERVTSDIDPKFYLKYTNITVGHPERADPDAIDR 90
Query: 36 ----DHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQ 91
CR I+Y+ + D+E Y G V R+ G+ P+ML++ +C L G D
Sbjct: 91 SITPHECRLRDITYSAFIYVDIE--YTRGGKIVRRKNVPIGRLPIMLRSNKCWLAGQDEA 148
Query: 92 KLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRC 151
L + E + GGYF++ G E+V IL ++ + + R+E
Sbjct: 149 TLARMNECPLDPGGYFVVKGTEKV----ILVQEQLSKNRIIVEADSRKEVVQASVTSSTH 204
Query: 152 VRKDQSSVTLK--LYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY 209
RK +S V K L Y+ + S+ +P+ +V +A+ +D EI L
Sbjct: 205 ERKSKSYVLTKHGLIYVKHNSLNED---------IPIVVVFRAMGIQSDKEIL-QLVAGQ 254
Query: 210 DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGL-----QS 264
DE Y +E I L L + TR Q L ++G + + G+ S
Sbjct: 255 DETY------------AELFSINLERAAKLGIFTRQQALDYMGARVKIMRRGVGMRRTAS 302
Query: 265 ESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQK-LFSLVDHTSVSDNPDSLQNQEILL 323
+ V TVI ++ V D +K + M+++ L +VD + V D D + N+ + L
Sbjct: 303 DEALEVLATVIMAHVPVEQGDFRNKTMYIATMVRRVLVCMVDESKVDDR-DYVGNKRLEL 361
Query: 324 PGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQ------ 377
G L+ + ED KKF+F NI KV++K P++
Sbjct: 362 AGQLLALLF----EDLF---------------KKFNFDLKTNIDKVLKK-PNRTSEFDAY 401
Query: 378 ---------IGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGA 428
I + TG + + +RAG T RL+++ + + +
Sbjct: 402 NQFFYHGDYITAGFVRAISTGNWSLKRFK--MERAGVTHVLSRLSYISALGMMTRI--SS 457
Query: 429 SFAGLRTTS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSK 487
F R S R L P WG LCP TP+GE CGL+ ++ + + D +R
Sbjct: 458 QFEKTRKVSGPRALQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDVDEAPIVRLCYA 517
Query: 488 MRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVS 547
+ + +L G + P+ V L+G VVGV + + VA RRL+
Sbjct: 518 LGLEDINLLTGAELYQ----------PSTYIVFLNGNVVGVTLTPH--RFVAQFRRLR-- 563
Query: 548 AASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNI--SLPSEESQNIELIGPFE 605
A +I + +V + + + + + + RP+ + P S++I +
Sbjct: 564 RAGLISE-----FVGIYTNTHHQTVNIASDGGRICRPMIIVENGRPQVTSEHIRQLQAGT 618
Query: 606 QVFME------IRCPDGGDGGRRNAF--------PATHEEIHPTGMLSVVANLTPYSDHN 651
F + + D + N TH EI +L A L PY HN
Sbjct: 619 MTFDDFLRRGLVEYLDVNEENDSNIALFEHSIGPSTTHLEIECFTLLGACAGLIPYPHHN 678
Query: 652 QSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTN 711
QSPRN YQC M KQ +G R D LY + PQ P+V T T G D+ P G N
Sbjct: 679 QSPRNTYQCAMGKQAIGAIGYNQLNRIDTLLYLMVYPQKPMVSTKTIELIGYDKLPAGQN 738
Query: 712 AIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQI----------YQTETIDLSDDGNKVDR 761
A+VAV++++GYD+EDA+++N +S+DRG Q+ Y T D D +
Sbjct: 739 AMVAVMSFSGYDIEDALVMNCASLDRGFGRCQVMRKQSTVLRKYANGTFDRLADAPVNEH 798
Query: 762 GQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTT---NSWRTN------- 811
G+ L R +++DG+ G+ + PG+ Y + T NS T
Sbjct: 799 GEPLRR--------FEALEADGISGAGERLEPGDVYINKQIPTNANDNSAGTMLNSAITY 850
Query: 812 -----SRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQ 866
S K ++D V + +S K+ I R TR P +GDKFSSRHGQKGV
Sbjct: 851 KNAPLSYKSPVEGYIDQVLISDTDSDQTLVKSLI--RQTRRPELGDKFSSRHGQKGVIGL 908
Query: 867 LWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
+ P DMPF+ G+ PD+I+NPH FPSRMT+ ++E V+ K
Sbjct: 909 IVPQADMPFND-QGICPDIIMNPHGFPSRMTVGKMIELVSGK 949
>gi|255713708|ref|XP_002553136.1| KLTH0D09812p [Lachancea thermotolerans]
gi|238934516|emb|CAR22698.1| KLTH0D09812p [Lachancea thermotolerans CBS 6340]
Length = 1144
Score = 283 bits (723), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 267/976 (27%), Positives = 427/976 (43%), Gaps = 140/976 (14%)
Query: 9 FEPLRELVRHHIESFDYMLDEGLSEMFD-------------------------------- 36
F ++ LV+ H++SF+Y +D L ++
Sbjct: 49 FLKVKGLVKQHLDSFNYFVDVDLKKIIKANQLILSDVDPEFYLKYVDIRVGHRSTSSSKD 108
Query: 37 ------HCRQAKISYTGKLMADVEFQYLDAGSPVVRER-FNFGQFPVMLKTRRCHLQGAD 89
CR ++Y+ + D+E+ G ++ R G+ P+ML++ +C L GA
Sbjct: 109 YIVPPHECRLRDMTYSAPVYVDIEYT---RGRNIIMHRDVEIGRMPIMLRSNKCILNGAS 165
Query: 90 SQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVI 149
+ + + E + GGYFI+NG E+V IL ++ S R E KA+V
Sbjct: 166 EKDMAKINECPLDPGGYFIVNGTEKV----ILVQEQL------SKNRIIVEADEKKAIVQ 215
Query: 150 RCVRKDQSSVTLKLYYLL-NGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCC 208
V K Y + N + L +E +P+ +VLKA +DLEI L C
Sbjct: 216 ASVTSSTHERKSKTYVITKNDKIYLKHNSIAEE--VPIVLVLKACGIVSDLEIM-QLVCG 272
Query: 209 YDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPV----IDGLQS 264
D Y+ + + EV + + T+ Q L++IG + V + LQ
Sbjct: 273 NDSSYQ------------DIFAVNFEEVAKMKIYTQQQALEYIGSKVKTVRRQKLSTLQ- 319
Query: 265 ESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLP 324
E A+A TVI ++ V D +K + M +++ + + + D+ D + N+ + L
Sbjct: 320 EGIEAIATTVIA-HLTVEALDFREKALYIAVMTRRVVMAMHNPKMVDDRDYVGNKRLELA 378
Query: 325 GHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIET 384
G L+++ ++ + + K I ++ + ++ L +I S I + +
Sbjct: 379 GQLMSLLFEDLFKKFNNDFKANIDKVLKKPNRAMEYDALLSINV-----HSNNISSGLNR 433
Query: 385 MLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLLP 443
+ TG + + +RAG T RL+++ + + + F R S R L P
Sbjct: 434 AISTGNWSLKRFK--MERAGVTHVLSRLSYISALGMMTRI--SSQFEKSRKVSGPRALQP 489
Query: 444 ESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIP 503
+G LC TP+GE CGL+ ++ + + D + L L+GV I
Sbjct: 490 SQFGMLCTSDTPEGEACGLVKNLALMTHITT---------DDEEEPIKKLCFLLGVECI- 539
Query: 504 SLPKLVKSGPPAV-LSVLLDGRVVGVI--PSSEIEKVVAHLRRLKVSAASVIPDDLEVGY 560
+V S + V L+G +VGVI P+ K V+H R L+ S +
Sbjct: 540 ---NVVDSDSLHLNYCVYLNGTIVGVIRFPT----KFVSHFRNLRRSGKVS-------EF 585
Query: 561 VPLSLGGAYPGLYLFTSPPKFVRPV----RNISLPSEESQNIELIGPFE-QVFMEIRCPD 615
+ + +++ T + RP+ SL + + L G + F+++ +
Sbjct: 586 ISIYTNSHQKAVHIATDGGRICRPLIIVNEGKSLVTAQHLRQLLDGHLQFDDFLKLGLVE 645
Query: 616 GGDGGRRN-AFPA----------THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAK 664
D N +F A TH EI P +L VA L PY HNQSPRN YQC M K
Sbjct: 646 YLDVNEENDSFIALYERDLEPRITHLEIEPFTVLGAVAGLIPYPHHNQSPRNTYQCAMGK 705
Query: 665 QTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDM 724
Q +G R D LY + PQ P+V+T T D+ P G NA VAV++Y+GYD+
Sbjct: 706 QAIGAIAYNQFKRIDTLLYLMIYPQQPMVKTKTIELIDYDKLPAGQNATVAVMSYSGYDI 765
Query: 725 EDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSL--HSVIDSD 782
EDA++LNKSS+DRG + + T L N R ++ + + H + D
Sbjct: 766 EDALVLNKSSIDRGFGRCETRRKLTTVLKRYPNHTQDMVGGMRVDESGEPIWQHKPLGPD 825
Query: 783 GLPYVGQMIHPGEPYC--SIYDKTTNSWRTNSRKGSESVFVDYVA--------VDMKNSK 832
GL VG + G+ Y S+ ++S T S+ V Y A V M S+
Sbjct: 826 GLGEVGMKVESGQIYVNKSVPTNASDSVLTQSQAQYRETPVVYRAPEPSHIDQVMMSVSE 885
Query: 833 NLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAF 892
N + R R P +GDKFSSRHGQKGVC + D+PF+ G+ PD+I+NPH F
Sbjct: 886 NDQALIKVLLRQNRRPELGDKFSSRHGQKGVCGIIVNHEDLPFND-QGVVPDIIMNPHGF 944
Query: 893 PSRMTIAMLLESVAAK 908
PSRMT+ ++E ++ K
Sbjct: 945 PSRMTVGKMIELISGK 960
>gi|367009214|ref|XP_003679108.1| hypothetical protein TDEL_0A05650 [Torulaspora delbrueckii]
gi|359746765|emb|CCE89897.1| hypothetical protein TDEL_0A05650 [Torulaspora delbrueckii]
Length = 1142
Score = 281 bits (719), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 263/976 (26%), Positives = 429/976 (43%), Gaps = 141/976 (14%)
Query: 9 FEPLRELVRHHIESFDYMLDEGLSEMFD-------------------------------- 36
F ++ LV+ H++SF+Y +D L ++
Sbjct: 48 FLKVKGLVKQHLDSFNYFVDVDLRKIIKANQLILSDVDPEFYLKYVDIRVGQRSNGSKDY 107
Query: 37 -----HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQ 91
CR ++Y+ + D+E Y + ++ + G+ PVML++ +C L +D
Sbjct: 108 LTPPHECRLRDMTYSAPIYVDIE--YTRGRNIIMHKDVEIGRMPVMLRSNKCILHESDEA 165
Query: 92 KLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRC 151
+ L E + GGYFI+NG E+V IL ++ S R E KA+V
Sbjct: 166 MMAKLNECPLDPGGYFIVNGTEKV----ILVQEQL------SKNRIIVEADEKKAIV--- 212
Query: 152 VRKDQSSVTLKLY------YLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHL 205
Q+SVT + Y++ + ++ +P+ +VLKA +DLE+ L
Sbjct: 213 ----QASVTSSTHERKSKTYVVTKNEKIYLKHNSIAEDIPIVVVLKACGIVSDLEVM-QL 267
Query: 206 TCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPV----IDG 261
C D Y+ + I L E L+L T+ Q L++IG + V +
Sbjct: 268 VCGNDSSYQ------------DIFAINLEEAAKLNLYTQQQALEYIGSKVKTVRRQKLSV 315
Query: 262 LQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEI 321
LQ E A+A TVI ++ V D +K + M +++ + + + D+ D + N+ +
Sbjct: 316 LQ-EGIEAIATTVIA-HLTVEALDFREKALYIAIMTRRVVMAIYNPKMVDDRDYVGNKRL 373
Query: 322 LLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTS 381
L G LI++ ++ + + K I ++ + ++ L +I S I +
Sbjct: 374 ELAGQLISLLFEDLFKKFNSDFKASIDKVLKKPNRAMEYDALLSINV-----HSNNITSG 428
Query: 382 IETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRK 440
+ + TG + + +RAG T RL+++ + + + F R S R
Sbjct: 429 LNRAISTGNWSLKRFK--MERAGVTHVLSRLSYISALGMMTRI--SSQFEKSRKVSGPRA 484
Query: 441 LLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVG 500
L P +G LC TP+GE CGL+ ++ + + D + L L+GV
Sbjct: 485 LQPSQFGMLCTADTPEGEACGLVKNLALMTHITT---------DDEEEPIKKLCYLLGVE 535
Query: 501 MIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGY 560
I L + V L+G ++G + K + H R L+ S+ +
Sbjct: 536 DISLLDS---ASLHLNYGVHLNGTLIGT--TKYPTKFITHFRNLRRSSKVS-------AF 583
Query: 561 VPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSE--ESQNIELIGPFEQVF---MEIRCPD 615
+ + +++ T + RP+ +S ++ +++ + E VF +++ +
Sbjct: 584 ISIYANSHQKAVHIATDGGRICRPLIIVSDGQSRVKADHLKKLLDGELVFDDFLKLGLVE 643
Query: 616 GGDGGRRN-AFPA----------THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAK 664
D N +F A TH EI P +L VA L PY HNQSPRN YQC M K
Sbjct: 644 YLDVNEENDSFIALYEKDIDQNITHMEIEPFTVLGAVAGLIPYPHHNQSPRNTYQCAMGK 703
Query: 665 QTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDM 724
Q +G R D LY + PQ P+V+T T D+ P G NA VAV++Y+GYD+
Sbjct: 704 QAIGAIAYNQFKRIDTLLYLMIYPQQPMVKTKTIELIDYDKLPAGQNATVAVMSYSGYDI 763
Query: 725 EDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSL--HSVIDSD 782
EDA++LNKSS+DRG + + T L N R +++ + + H + D
Sbjct: 764 EDALVLNKSSIDRGFGRCETRRKNTTVLKRYPNHTQDIIGGMRVDENGEPIWQHKCLGPD 823
Query: 783 GLPYVGQMIHPGEPYC--SIYDKTTNSWRTNSRKGSESVFVDYVA--------VDMKNSK 832
GL VG + G+ Y SI + + TN++ + V Y A V M S
Sbjct: 824 GLGEVGMKLDSGQIYINKSIPTNSGDGVLTNTQSQYKETPVIYRAPEPSHIDQVMMSVSD 883
Query: 833 NLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAF 892
N + R R P +GDKFSSRHGQKGVC + DMPF+ G+ PD+I+NPH F
Sbjct: 884 NDQALIKVLLRQNRRPELGDKFSSRHGQKGVCGIIVKQEDMPFND-QGICPDIIMNPHGF 942
Query: 893 PSRMTIAMLLESVAAK 908
PSRMT+ ++E ++ K
Sbjct: 943 PSRMTVGKMIELISGK 958
>gi|336374505|gb|EGO02842.1| hypothetical protein SERLA73DRAFT_84701 [Serpula lacrymans var.
lacrymans S7.3]
gi|336387393|gb|EGO28538.1| hypothetical protein SERLADRAFT_359856 [Serpula lacrymans var.
lacrymans S7.9]
Length = 1162
Score = 280 bits (717), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 272/993 (27%), Positives = 423/993 (42%), Gaps = 164/993 (16%)
Query: 9 FEPLRELVRHHIESFDYMLDEGLSEMFD-------------------------------- 36
F ++ LV+ HI+SF+Y +D + +
Sbjct: 41 FLKVKGLVKQHIDSFNYFVDVDIKNIVKANNKVTSDVDPRFWLKYTDINVGYPDRTDLDA 100
Query: 37 --------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGA 88
CR I+Y+ ++ V QY S V R N G+ P+ML++ +C L G
Sbjct: 101 IDKSITPHECRLRDITYSAPVV--VTIQYTRGKSVVRRPNVNIGRLPIMLRSNKCILTGK 158
Query: 89 DSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVV 148
+ +L + E + GGYF++ G E+V IL ++ S R E + K VV
Sbjct: 159 NEAQLARMTECPLDPGGYFVVKGTEKV----ILVQEQL------SKNRIIVETDSVKGVV 208
Query: 149 -IRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYL--------LPVGIVLKALVDTNDL 199
C + K Y +GK YL +P+ I LKAL D
Sbjct: 209 QASCTSSTHGGLKSKTYVATK---------KGKIYLRHNSIHEDVPIVIALKALGIQADK 259
Query: 200 EIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQP-- 257
EI LT E YK A L E L + T Q L+ IG +
Sbjct: 260 EIL-LLTAGNTEAYKSAFSAN------------LEEAAKLGVFTHHQALEWIGTRVKVNR 306
Query: 258 VIDGLQSESYYAVAE---TVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPD 314
+ G + ++ E T++ ++ V D K + M +++ +D + D+ D
Sbjct: 307 KVVGPRRPAWEEALEALATIVLAHVPVKGLDLRSKAIFVATMTRRVLMAMDDEKMVDDRD 366
Query: 315 SLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGK--KFDFFNLANIKKVMEK 372
+ N+ + L G L+ + ++ + + K I ++ + +FD FN +
Sbjct: 367 YVGNKRLELAGQLLALLFEDLFKTFNSNLKSSIDKVLKKPSRTNEFDAFNTMQFQ----- 421
Query: 373 NPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAG 432
I + + TG + + +RAG T RL+F+ + + + F
Sbjct: 422 --GDHITSGFIRAISTGNWSLKRFK--MERAGVTHVLSRLSFISALGMMTRI--SSQFEK 475
Query: 433 LRTTS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTS 491
R S R L P WG LCP TP+GE CGL+ ++ + + + +R
Sbjct: 476 TRKVSGPRALQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDVEEEPIVR-------- 527
Query: 492 ILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASV 551
L ++GV I SL + P V ++G +VG+ + + V++ RRL+ A
Sbjct: 528 -LAFMLGVEDI-SLATGTEIYGPHTFVVNVNGTIVGL--TRYPTRFVSNFRRLR--RAGR 581
Query: 552 IPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRP--VRNISLPSEESQNIEL----IGPFE 605
+ + +V + + + +++ + + RP + P S +I L + F+
Sbjct: 582 LSE-----FVGVYINHHHHAVHIASDGGRICRPMIIVESGRPRVTSDHIMLLKKGVATFD 636
Query: 606 QVFMEIRCPDGGDGGRRN-AFPA----------THEEIHPTGMLSVVANLTPYSDHNQSP 654
F+ + D N ++ A TH EI P +L VA L PY HNQSP
Sbjct: 637 D-FLRKGLVEYLDVNEENDSYIALYESDIVPTTTHLEIEPFTLLGAVAGLIPYPHHNQSP 695
Query: 655 RNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIV 714
RN YQC M KQ +G R D LY PQ P+V+T T G D P G NA V
Sbjct: 696 RNTYQCAMGKQAIGAIGYNQFNRIDTLLYLSVYPQQPMVKTKTIELIGYDRLPAGQNATV 755
Query: 715 AVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKV-DR-GQKLFRRNKDA 772
AV++Y+GYD+EDA+ILNK+S+DRG Q+ + + N DR N
Sbjct: 756 AVMSYSGYDIEDALILNKASLDRGYGRCQVLRKNATLIRKYPNGTFDRLADAPLDENGQI 815
Query: 773 KSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESV------------- 819
+ + ++ DGL VG+ + PG+ Y I +T + NS G +
Sbjct: 816 QKKYDIVQLDGLAGVGERVDPGDVY--INKQTPTNANDNSFTGQAAAVPYKNSPMTYKSP 873
Query: 820 ---FVDYVAV-DMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPF 875
++D V V D +N + L + + R TR P +GDKFSSRHGQKGVC + DMPF
Sbjct: 874 VAGYIDKVLVSDTENDQTLIK---VLIRQTRRPELGDKFSSRHGQKGVCGLIVNQEDMPF 930
Query: 876 SGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
+ G+ PD I+NPH FPSRMT+ ++E +A K
Sbjct: 931 ND-QGINPDTIMNPHGFPSRMTVGKMIELLAGK 962
>gi|356495051|ref|XP_003516394.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like
[Glycine max]
Length = 1166
Score = 280 bits (716), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 255/987 (25%), Positives = 421/987 (42%), Gaps = 151/987 (15%)
Query: 8 DFEPLRELVRHHIESFDYM---------------------------LDEGL---SEMFDH 37
+F +R LV+ H++SF+Y L+ G+ S M D
Sbjct: 53 EFLKVRGLVKQHLDSFNYFVRTDIKKIVRANNLIMASRYPHIYLRFLNVGIGKPSMMIDE 112
Query: 38 ---------CRQAKISYTGKLMADVEFQYLDAGSPVVRE--RFNFGQFPVMLKTRRCHLQ 86
CR + ++Y + ADVE+ P + R G+ P+ML++ C L
Sbjct: 113 VTEGLTPQTCRLSDLTYAAPICADVEYTLRSHDKPDNKRTLRVEIGRMPIMLRSCCCVLH 172
Query: 87 GADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKA 146
G D +L L E + GGYF++ G E+V +++ +Q +S R ++G +
Sbjct: 173 GKDEAELAKLGECPLDPGGYFVIKGTEKV---ILIQEQ---LSKNRIIIDTDKKGNITAS 226
Query: 147 VVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEY--LLPVGIVLKALVDTNDLEIFNH 204
V + K ++ WLQ ++ +P+ +V+KA+ +D E+
Sbjct: 227 VT-----SSTEKIKTKTVIVMENE---KLWLQLNKFPKKVPLMVVMKAMGMESDQEVIQ- 277
Query: 205 LTCCYDEKYKKEKGAVG-SPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQ 263
VG P S + + E + + T+ Q L+++ + +
Sbjct: 278 --------------MVGRDPRYSFLLLPSIEECRKCKVYTKEQALEYLDKLVKRPTYSSN 323
Query: 264 SESYYAVAETVIRDYIFVHLNDNNDKFN----LLIFMLQKLFSLVDHTSVSDNPDSLQNQ 319
S A + +RD ++ + D F + M++++ + + D+ D + N+
Sbjct: 324 SAEKEGAAFSALRDVFLANVPVDQDNFQKKCIYVAVMMRRIMDAILNKDAMDDKDYVGNK 383
Query: 320 EILLPGHLITIYLKEKLEDWLRKGKKLIQDEIE--NNGKKFDFFNLANIKKVMEKNPSKQ 377
+ L G LI++ ++ + + K L ++ + K FD L + +
Sbjct: 384 RLELSGQLISLLFEDLFKSMTTEVKNLTDKMLDKPDKAKNFDICTLLTRTRSI------- 436
Query: 378 IGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS 437
I +E L TG + +R G T +RL+F+ + V F R S
Sbjct: 437 ITLGLERTLSTGNFEIKRFR--MERKGMTQVLQRLSFIGALGHMTRV--SPQFEKSRKVS 492
Query: 438 -VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
R L P WG LCP TP+GE CGL+ ++ V + + + I F + + + L
Sbjct: 493 GPRALQPSQWGMLCPCDTPEGESCGLVKNLALMTHVTTDEEEKPLISLFYSLDVARIEHL 552
Query: 497 IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDL 556
+ P V+ +G ++G +R+L+ +
Sbjct: 553 FAEEL----------HTPDSFLVIFNGLILG--KHRRPLHFATRIRKLRRAG-------- 592
Query: 557 EVG-YVPLSLGGAYPGLYLFTSPPKFVRPV----RNISLPSEESQN--IELIGPFEQVFM 609
E+G +V + + +YL + + RP+ + IS + ++ + F+
Sbjct: 593 EIGEFVSVYVNEKQHCVYLASDGGRVCRPLVIADKGISRIKQHHMKELMDGVCTFDDFLR 652
Query: 610 EIRCPDGGDGGRRNAFPA----------THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQ 659
+ NA A TH EI P +L V+A L PY HNQSPRN YQ
Sbjct: 653 DGLLEYLDVNEENNALIALYEGDATSETTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQ 712
Query: 660 CQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAY 719
C M KQ MG R D LY L PQ P++ T T G D+ G NA VAV++Y
Sbjct: 713 CAMGKQAMGNIAFNQLRRMDSLLYLLVYPQRPLLTTKTIELVGYDKLGAGQNATVAVMSY 772
Query: 720 TGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNK--DAKSLHS 777
+GYD+EDA+++NK+S+DRG + + + N D ++ R N+ D
Sbjct: 773 SGYDIEDAIVMNKASLDRGFGRCIVMKKYNAIIQKHSN--DTSDRILRPNRTADTAGRMQ 830
Query: 778 VIDSDGLPYVGQMIHPGEPYC--------------SIYDKTTNSWRTNSR--KGSESVFV 821
++D DG+ G+++ P + Y S + +++R+N++ KG+ V
Sbjct: 831 ILDDDGIAAPGEILRPYDIYINKQSPIDTRTPKTGSAANLPDSAYRSNAQSFKGNGGEVV 890
Query: 822 DYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGM 881
D V + N+ K I RHTR P +GDKFSSRHGQKGVC + P D PFS G+
Sbjct: 891 DRVVLCSDKDNNMCIKFLI--RHTRRPELGDKFSSRHGQKGVCGTIVPQEDFPFSE-KGI 947
Query: 882 RPDLIINPHAFPSRMTIAMLLESVAAK 908
PDLI+NPH FPSRMT+ ++E + K
Sbjct: 948 CPDLIMNPHGFPSRMTVGKMIELLGGK 974
>gi|448527137|ref|XP_003869439.1| Ret1 protein [Candida orthopsilosis Co 90-125]
gi|380353792|emb|CCG23304.1| Ret1 protein [Candida orthopsilosis]
Length = 1149
Score = 279 bits (714), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 268/993 (26%), Positives = 428/993 (43%), Gaps = 161/993 (16%)
Query: 9 FEPLRELVRHHIESFDYMLDEGLSEMFD-------------------------------- 36
F ++ LV+ H++SF+Y +D L ++ +
Sbjct: 43 FLKIKGLVKQHLDSFNYFVDVDLKKILNANSLVLSDVDPDFYVKYIDIRVGHKSTSPPGT 102
Query: 37 --------HCRQAKISYTGKLMADVEFQYLDAGSPVVRE-RFNFGQFPVMLKTRRCHLQG 87
CR ++Y+ + DVE+ G ++R G+ P+ML++ +C L G
Sbjct: 103 KEVILPPHECRLRDLTYSAPIYVDVEYT---RGRKIIRHYDLEIGRMPIMLRSNKCMLDG 159
Query: 88 ADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAV 147
D + + + E + GGYFI+NG E+V +++ +Q ++ + D ++G +V
Sbjct: 160 MDDKMMAQVDECPLDPGGYFIVNGTEKV---ILVQEQLSKNRIIVEA--DEKKGIVQASV 214
Query: 148 VIRC-VRKDQSSVTLK--LYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNH 204
RK ++ V K YL + S+ +P+ IVLKA T+DLEI
Sbjct: 215 TSSTHERKSKTYVITKNDKIYLKHNSISED---------IPIVIVLKAAGVTSDLEIL-Q 264
Query: 205 LTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQ-------P 257
L C D Y+ + + E L + T+ Q L ++G+ + P
Sbjct: 265 LVCGSDPNYQ------------DLFVVNFEEAAKLEVFTQQQALLYLGKRVKTIRRAGAP 312
Query: 258 VIDGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQ 317
+ LQ E A+A T+I V L +K + M +++ + + + D+ D +
Sbjct: 313 KLSQLQ-EGIEAIATTIIAHLTVVDLQ-FREKALYMAMMARRVVMAMHNPKMVDDRDYVG 370
Query: 318 NQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQ 377
N+ + L G L+++ ++ + + K I ++ + +F L +I S
Sbjct: 371 NKRLELAGQLMSLLFEDLFKKFNSDFKANIDKILKKPSRTSEFDALLSINI-----HSNN 425
Query: 378 IGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS 437
I + + TG + + +RAG T RL+++ + + + F R S
Sbjct: 426 ITMGLNRAISTGNWSLKRFK--MERAGVTHVLSRLSYISALGMMTRI--SSQFEKSRKVS 481
Query: 438 -VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
R L P +G LC TP+GE CGL+ ++ + + D G I+ K+ T++
Sbjct: 482 GPRALQPSQFGMLCTADTPEGEACGLVKNLALMTHITTD-DEEGPIK---KLCTAL---- 533
Query: 497 IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRL----KVSAASVI 552
G I L V L+G ++G + K V RRL KVSA
Sbjct: 534 -GCESILGLDSATLH-VEGNFGVYLNGTLLGA--TRFPVKFVTDFRRLRRAGKVSA---- 585
Query: 553 PDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRP---VRNISLPSEESQNIELIG---PFEQ 606
+V + +++ T + RP V N E + +L+ F+
Sbjct: 586 -------FVSIYTNTHQQAVHIATDGGRICRPLIIVENNKSKVEANHLAKLLNGEWEFDD 638
Query: 607 VFME---------------IRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHN 651
E I + G NA TH EI P +L VA L PY HN
Sbjct: 639 FLKEGLVEYLDVNEENDSLIALYEKDIGENPNA-TVTHLEIEPFTVLGAVAGLIPYPHHN 697
Query: 652 QSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTN 711
QSPRN YQC M KQ +G R D LY + PQ P+V+T T D+ P G N
Sbjct: 698 QSPRNTYQCAMGKQAIGAIAYNQFRRIDTLLYFMVYPQQPMVKTKTIELINYDKLPAGQN 757
Query: 712 AIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKD 771
A VAV++Y+GYD+EDA++LNKSS+DRG Q+ + T+ L N R +++
Sbjct: 758 ATVAVMSYSGYDIEDALVLNKSSLDRGFGRCQVVRKNTVQLKKYPNHSKDILSGMRVDEN 817
Query: 772 AKSL--HSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSR--------------KG 815
+ + H + DGL VG I G+ + + T + + + KG
Sbjct: 818 DEPIFPHQALGPDGLGEVGSKIENGQVFANKCVPTNSGDSSLGQPQQVESHREAPLFYKG 877
Query: 816 SESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPF 875
E +VD V M S N + R TR P +GDKFSSRHGQKGVC + D+PF
Sbjct: 878 PEPSYVDQVM--MSVSDNDQALIKVLLRQTRRPELGDKFSSRHGQKGVCGIIVQQEDLPF 935
Query: 876 SGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
+ G+ PD+I+NPH FPSRMT+ ++E ++ K
Sbjct: 936 ND-DGISPDIIMNPHGFPSRMTVGKMIELISGK 967
>gi|312374784|gb|EFR22267.1| hypothetical protein AND_15508 [Anopheles darlingi]
Length = 1134
Score = 279 bits (713), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 256/934 (27%), Positives = 410/934 (43%), Gaps = 142/934 (15%)
Query: 37 HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
CR ++Y+ + DVE Y VVR G+ P+ML++ C L G +L +
Sbjct: 100 ECRLRDMTYSAPITVDVE--YTRGTQRVVRNGLLIGRMPIMLRSSNCILNGKSDYELSQV 157
Query: 97 KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRC--VRK 154
E + GGYFI+ G E+V +++ +Q M+ + +I+C
Sbjct: 158 NECPMDPGGYFIIRGTEKV---ILIQEQLSWNKMITEDYNG----------LIQCQVTSS 204
Query: 155 DQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYK 214
+ + Y +G L +E +PV I+LKA+ +D EI + D++ +
Sbjct: 205 THEKKSRTILYSKHGRYYLKHNSMTEE--IPVAIILKAMGVASDQEIMQLVGI--DQETQ 260
Query: 215 KEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAET- 273
K R L E + T+ + L+++G + Y A+
Sbjct: 261 K------------RFAPSLLEAAKHKVYTQQRALEYMGSKLIAKRFTTAATKYRTTADEA 308
Query: 274 --VIRDYIFVHLNDNNDKFNL----LIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHL 327
++ I H+ + F + + M++++ + S D+ D N+ + L G L
Sbjct: 309 RDLLATTILAHVPVRSFNFQVKAIYVALMIRRVMAAELDRSAVDDRDYYGNKRLELAGSL 368
Query: 328 ITIYLKEKLE--DWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETM 385
+++ ++ L+ +W K+I D+ K F ++++ + I + +ET
Sbjct: 369 LSLMFEDLLKRFNW---ELKMIADKNIPKIKAAQFDVGKHMREAL-------ITSGLETA 418
Query: 386 LKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLLPE 444
+ TG + +RAG T RL+++ + V+ + F R S R L P
Sbjct: 419 ISTGNWTIKRFK--MERAGVTQVLSRLSYISALGMMTRVN--SQFEKTRKVSGPRSLQPS 474
Query: 445 SWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPS 504
WG LCP TP+GE CGL+ ++ + + D IR +R LIG I +
Sbjct: 475 QWGMLCPSDTPEGEACGLVKNLALMTHITTEVDEEPVIRLAYNAGVEDIR-LIGGETINN 533
Query: 505 LPKLVKSGPPAVLSVLLDGRVVGV-IPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPL 563
P V V ++G ++GV I + +V +RR + A +V +
Sbjct: 534 ---------PKVFMVFINGNILGVTIAYRRLVEVFRMMRRRGLIGA----------FVSI 574
Query: 564 SLGGAYPGLYLFTSPPKFVRP--VRNISLPSEESQNIELIGPFEQVFMEIRCPDG--GDG 619
+Y+ T + RP + LP ++IE Q+ + +R D DG
Sbjct: 575 HTSFTQRCVYIHTDGGRLCRPYIIVQAGLPLVLQEHIE------QLKLGLRKFDDFLHDG 628
Query: 620 --------GRRNAFPA-----------THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQC 660
++F A TH EI P +L V A L PY HNQSPRN YQC
Sbjct: 629 LIEYLDVNEENDSFIAYQERDIDPEKTTHLEIEPFTLLGVCAGLVPYPHHNQSPRNTYQC 688
Query: 661 QMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYT 720
M KQ MG K R D +Y++ PQTP+VR+ T D+ P G NA VAV++Y+
Sbjct: 689 AMGKQAMGIIGYNQKNRIDTLMYNIVYPQTPMVRSRTIELTNFDKLPAGQNATVAVMSYS 748
Query: 721 GYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKV-DRGQKLFRRNKDAKSL--HS 777
GYD+EDA+ILNK+S+DRG +Y+ + N+ DR + + K + H
Sbjct: 749 GYDIEDALILNKASIDRGYGRCLVYKNSKCTIKRYSNQTFDRIMGPMKDSLTGKVIARHE 808
Query: 778 VIDSDGLPYVGQMIHPGEPYC---SIYDKTTNSWRTN--------------------SRK 814
+D+DG+ + PGE ++ +K + ++N + K
Sbjct: 809 CLDTDGI------VSPGERLVCKQTMVNKEMPAVKSNNPIEQKESGQQPIAYSAVPITYK 862
Query: 815 GSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMP 874
G+E + + V V N + K I R TR P IGDKFSSRHGQKGV + D+P
Sbjct: 863 GTEPSYAERVLVSTNNEEEFLVK--ILLRQTRRPEIGDKFSSRHGQKGVTGLIVDQEDLP 920
Query: 875 FSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
F+ GM PD+++NPH FPSRMT+ LE + +K
Sbjct: 921 FNDY-GMAPDMVMNPHGFPSRMTVGKTLELLGSK 953
>gi|402220302|gb|EJU00374.1| subunit of DNA dependent RNA-polymerase [Dacryopinax sp. DJM-731
SS1]
Length = 1151
Score = 278 bits (712), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 253/944 (26%), Positives = 416/944 (44%), Gaps = 145/944 (15%)
Query: 37 HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
CR +Y+G++ +VE Y+ ++R G+ P+ML++ +C L G +L +
Sbjct: 100 ECRLRDTTYSGRITVNVE--YIRGNKKIIRRGIEIGRLPIMLRSNKCVLTGKSEAELARM 157
Query: 97 KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQ 156
+E + GGYF++ G E+V IL ++ S R E K VV+ V
Sbjct: 158 QECPLDPGGYFVVKGTEKV----ILVQEQL------SKNRIIVETDPSKGVVMASVTSST 207
Query: 157 SSVTLKLYYLLNGSVRLGFWLQGKEYL--------LPVGIVLKALVDTNDLEIFNHLTCC 208
K Y L + K YL +P+ IVLKA+ +D EI L C
Sbjct: 208 HERKSKTYVLTK---------KNKIYLKHNSVTEDIPICIVLKAVGVQSDKEIL-QLVCG 257
Query: 209 YDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEH--------FQPVID 260
++E+Y++ A L + L + T+ Q L+++G F +
Sbjct: 258 HNEEYRESFAAN------------LEDAARLGVFTQRQALEYMGSRVKVNRPRPFGAPLA 305
Query: 261 GLQS-------ESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNP 313
G Q E+ A+A T++ ++ + D K + M++++ + + D+
Sbjct: 306 GTQGPRRPAWEEAMEALA-TIVLAHVEMEGLDFRPKAVYIAVMVRRVLMAMKDEKLVDDR 364
Query: 314 DSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKN 373
D + N+ + L G L+ + L E L + K+ D++ + + +++ IK +
Sbjct: 365 DYVGNKRLELAGQLLAL-LFEDLFKKFNQDLKMNIDKVLKKPSRTEEYDV--IKALTFHA 421
Query: 374 PSKQIGTSIETMLKTGRLATQT-GLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAG 432
S+ I + TG + + +D RAG T RL+F+ + + + F
Sbjct: 422 QSEGITQGFIRAISTGNWSLKRFKMD---RAGVTHVLSRLSFVSALGMMTRIT--SQFEK 476
Query: 433 LRTTS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTS 491
R S R L P WG LCP TP+GE CGL+ ++ + + + +R
Sbjct: 477 TRKVSGPRALQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDVEEEPIVR-------- 528
Query: 492 ILRVLIGVGMIPSLPKLVKSGP----PAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVS 547
+ ++GV I + +GP P V ++G ++G+ + + + V LR+L+
Sbjct: 529 -VAFMLGVEDIN-----LATGPEIHHPDTFMVNVNGSIIGL--TRQPGRFVVALRKLR-- 578
Query: 548 AASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNI--SLPSEESQNIELIGPFE 605
A I + +V + + + +++ + RP+ + P +I+L+
Sbjct: 579 RAGRISE-----FVSVYINHHHKTVHIAADGGRICRPMIIVEKGRPRVTEDHIKLLKKGH 633
Query: 606 QVFME------IRCPDGGDGG-------RRNAFPAT-HEEIHPTGMLSVVANLTPYSDHN 651
F + + D + R P T H EI P +L VA L PY HN
Sbjct: 634 VTFDDFLRKGLVEYLDVNEENDSYIALYEREILPTTTHLEIEPFTILGAVAGLIPYPHHN 693
Query: 652 QSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTN 711
QSPRN YQC M KQ +G R D LY + PQ P+V+T T D+ P G N
Sbjct: 694 QSPRNTYQCAMGKQAIGAIGYNQFRRIDTLLYVMVYPQQPMVKTRTIELINYDKLPAGQN 753
Query: 712 AIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKD 771
A VAV++Y+GYD+EDA ++N++S+DRG Q+Y+ + N F R D
Sbjct: 754 ATVAVMSYSGYDIEDASMINRASLDRGYGRCQVYRKNVTLIRKYPNGT------FDRLAD 807
Query: 772 A---------KSLHSVIDSDGLPYVGQMIHPGEPYC---SIYDKTTNSWRTNSRKGSESV 819
A +S + +DG+ VG+ + PG+ Y S + NS+ N + +
Sbjct: 808 APIDEVTGRPPDKYSALQADGIAGVGEQLRPGDVYINKQSPANANDNSFNANVLDSTSTS 867
Query: 820 FVDYVAVDM---------------KNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVC 864
V Y M ++N + R TR P +GDKFSSRHGQKGVC
Sbjct: 868 LVQYKNTPMTYRSPVGGIVDKVMLTETENDQTLVKVLIRQTRRPELGDKFSSRHGQKGVC 927
Query: 865 SQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
+ + DMPF+ G++PD+I NPH PSRMT+ ++E +A K
Sbjct: 928 GLIINEEDMPFND-QGIKPDVIFNPHGMPSRMTVGKMIELLAGK 970
>gi|365986765|ref|XP_003670214.1| hypothetical protein NDAI_0E01550 [Naumovozyma dairenensis CBS 421]
gi|343768984|emb|CCD24971.1| hypothetical protein NDAI_0E01550 [Naumovozyma dairenensis CBS 421]
Length = 1154
Score = 278 bits (712), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 258/978 (26%), Positives = 422/978 (43%), Gaps = 143/978 (14%)
Query: 9 FEPLRELVRHHIESFDYMLDEGLSEMFD-------------------------------- 36
F ++ LV+ H++SF+Y +D L ++
Sbjct: 57 FLKVKGLVKQHLDSFNYFVDVDLKKIIKANQLILSDVDPEFYLKYVDIRVGKKSTSSARD 116
Query: 37 ------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADS 90
CR ++Y+ + D+E Y + ++ + G+ P+ML++ +C L GAD
Sbjct: 117 YLTPPHECRLRDMTYSAPIYVDIE--YTRGRNIIMHKDVEIGRMPIMLRSNKCTLYGADE 174
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
+++ L E + GGYFI+NG E+V +++ +Q ++ + D ++G +V
Sbjct: 175 KQMAKLNECPLDPGGYFIVNGTEKV---ILVQEQLSKNRIIVEA--DEKKGIVQASVTSS 229
Query: 151 C-VRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY 209
RK ++ V K NG + L +E +P+ IVLKA +DLEI L C
Sbjct: 230 THERKSKTYVITK-----NGKIYLKHNSIAEE--IPIVIVLKACGIVSDLEIM-QLVCGN 281
Query: 210 DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPV----IDGLQSE 265
D Y+ + + L E L+L T+ Q L+ IG + + + LQ E
Sbjct: 282 DSSYQ------------DIFAVNLEEAAKLNLYTQQQALEFIGAKVKTMRRQKLSILQ-E 328
Query: 266 SYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPG 325
A+A TV+ ++ V D +K + M +++ + + + D+ D + N+ + L G
Sbjct: 329 GIEAIATTVVA-HLTVEALDFREKALYMAMMTRRVVMAIHNPKMVDDRDYVGNKRLELAG 387
Query: 326 HLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETM 385
++++ ++ + + K I +E + ++ L +I S I + +
Sbjct: 388 QMVSLLFEDLFKKFNSDFKATIDKVLEKPNRAMEYDALLSINV-----HSNNITSGLNRA 442
Query: 386 LKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLLPE 444
+ TG + + +RAG T RL+++ + + + F R S R L P
Sbjct: 443 ISTGNWSLKRF--KMERAGVTHVLSRLSYISALGMMTRI--SSQFEKSRKVSGPRALQPS 498
Query: 445 SWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPS 504
+G LC TP+GE CGL+ ++ + S I RV +G +
Sbjct: 499 QFGMLCTADTPEGEACGLVKNLALMTHITS-----------DDEEEPIKRVCYVLG-VED 546
Query: 505 LPKLVKSGPPAVLSVLLDGRVVGV--IPSSEIEKVVAHLRRL-KVSAASVIPDDLEVGYV 561
+ + + V L+G ++G P + + HLRR KVS ++
Sbjct: 547 ISLIDSASLHLNFGVYLNGTLIGTTRFPIKFVSQ-FRHLRRTGKVSE-----------FI 594
Query: 562 PLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFE-----QVFMEIRCPDG 616
+ +++ T + RP+ ++ L E F+++ +
Sbjct: 595 SIYTNSHQKAVHIATDGGRICRPLIIVTNGKSHVTADHLRSLLEGKLVFDDFLKLGLVEY 654
Query: 617 GDGGRRN-AFPATHE----------EIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQ 665
D N +F A +E EI P +L VA L PY HNQSPRN YQC M KQ
Sbjct: 655 LDVNEENDSFIALYEKDINVASTHMEIEPFTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQ 714
Query: 666 TMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDME 725
+G R D LY + PQ P+V+T T D+ P G NA VAV++Y+GYD+E
Sbjct: 715 AIGAIAYNQFKRIDTLLYLMIYPQQPMVKTKTIELIDYDKLPAGQNATVAVMSYSGYDIE 774
Query: 726 DAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFR--RNKDAKSLHSVIDSDG 783
DA+++NK+S+DRG + + T L N R N D H + DG
Sbjct: 775 DALVINKASIDRGFGRCETRRKTTTILKRYPNHTQDIISGMRVDENGDPIWQHKALGPDG 834
Query: 784 LPYVGQMIHPGEPYCSIYDKTTNSWRTNSR-------------KGSESVFVDYVAVDMKN 830
L VG + G+ Y + T + N+ + E +D V M
Sbjct: 835 LGEVGMKLDSGQIYINKAVPTNPTSDLNAAPEQSQYRDTPVMYRAPEPSHIDQVM--MSV 892
Query: 831 SKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPH 890
S N + R R P +GDKFSSRHGQKGVC + DMPF+ G+ PD+I+NPH
Sbjct: 893 SDNDQALIKVLLRQNRRPELGDKFSSRHGQKGVCGIIVQQEDMPFND-QGIVPDIIMNPH 951
Query: 891 AFPSRMTIAMLLESVAAK 908
FPSRMT+ ++E V+ K
Sbjct: 952 GFPSRMTVGKMIELVSGK 969
>gi|403213510|emb|CCK68012.1| hypothetical protein KNAG_0A03250 [Kazachstania naganishii CBS
8797]
Length = 1155
Score = 278 bits (711), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 256/977 (26%), Positives = 434/977 (44%), Gaps = 142/977 (14%)
Query: 9 FEPLRELVRHHIESFDYMLDEGLSEMF--------------------------------D 36
F ++ LV+ H++SF+Y +D L ++ D
Sbjct: 60 FLKVKGLVKQHLDSFNYFVDVDLKKIIKANELILSDVDPEFYLKYVDIRIGKRSTSSAND 119
Query: 37 H------CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADS 90
H CR ++Y+ + D+E Y + ++ + G+ P+ML++ +C L +
Sbjct: 120 HLTPPHECRLRDMTYSAPIYVDIE--YTRGRNIIMHKDVEIGRMPIMLRSNKCILSETNE 177
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
+++ L E + GGYFI+NG E+V +++ +Q ++ + D ++G +V
Sbjct: 178 REMARLNECPLDPGGYFIVNGTEKV---ILVQEQLSKNRIIVEA--DEKKGIVQASVTSS 232
Query: 151 C-VRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY 209
RK ++ V K N + L +E +P+ IVL+A +DLEI + C
Sbjct: 233 THERKSKTYVITK-----NDKIYLKHNSIAEE--IPIVIVLRACGIVSDLEIM-QVVCGN 284
Query: 210 DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPV----IDGLQSE 265
D Y+ + + E L++ T+ Q L+HIG + + + LQ E
Sbjct: 285 DSSYQ------------DIFAVNFEEASKLNVYTQQQALEHIGTKVKTMRRQKLSTLQ-E 331
Query: 266 SYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPG 325
A+A TV+ ++ V D +K + M +++ + + + D+ D + N+ + L G
Sbjct: 332 GIEAIATTVVA-HLTVEALDFREKALYMAMMARRVVMAMYNPKMVDDRDYVGNKRLELAG 390
Query: 326 HLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETM 385
LI++ ++ + + K I ++ + ++ L +I S I + +
Sbjct: 391 QLISLLFEDLFKKFNHDFKTSIDKVLKKPNRAMEYDALLSINV-----HSNNITSGLNRA 445
Query: 386 LKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLLPE 444
+ TG + + +RAG T RL+++ + + + F R S R L P
Sbjct: 446 ISTGNWSLKRFK--MERAGVTHVLSRLSYISALGMMTRI--SSQFEKSRKVSGPRALQPS 501
Query: 445 SWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPS 504
+G LC TP+GE CGL+ ++ + + D + L ++GV I
Sbjct: 502 QFGMLCTADTPEGEACGLVKNLALMTHITT---------DDEEEPIKKLCYILGVEDIT- 551
Query: 505 LPKLVKSGPPAV-LSVLLDGRVVGV--IPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYV 561
++ S + V L+G +VG+ P+ + + + R K+S ++
Sbjct: 552 ---VIDSASLHLNYGVYLNGTLVGITRFPNRFVHQFRSLRRTGKISE-----------FI 597
Query: 562 PLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEE--SQNIELIGPFEQVF---MEIRCPDG 616
+ + +++ T + RP+ ++ + ++ + E VF +++ +
Sbjct: 598 SIYINSHQHAVHIATDGGRICRPLIIVTAGKSHVTADHLRKLLDGELVFDDFLKLGLVEY 657
Query: 617 GDGGRRN-AFPA----------THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQ 665
D N +F A TH EI P +L VA L PY HNQSPRN YQC M KQ
Sbjct: 658 LDVNEENDSFIALYEKDLEPAITHMEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQ 717
Query: 666 TMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDME 725
+G R D LY + PQ P+V++ T D+ P G NA VAV++Y+GYD+E
Sbjct: 718 AIGAIAYNQFKRIDTLLYLMTYPQQPMVKSKTIELINYDKLPAGQNATVAVMSYSGYDIE 777
Query: 726 DAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDR--GQKLFRRNKDAKSLHSVIDSDG 783
DA++LNKSS+DRG + + T L N G N + H + DG
Sbjct: 778 DALVLNKSSIDRGFGRCETRRKTTTVLKRYPNHTQDIIGGMRVDENNERIWQHEALGPDG 837
Query: 784 LPYVGQMIHPGEPYC--SIYDKTTNSWRTNSR----------KGSESVFVDYVAVDMKNS 831
L VG ++ G+ Y S+ +T + N+ + ES +D V M S
Sbjct: 838 LGEVGMKLNSGQVYINKSVPTNSTEPFSGNTEAQYRETPVIYRAPESSHIDQVM--MSVS 895
Query: 832 KNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHA 891
N + R +R P +GDKFSSRHGQKGVC + DMPFS G+ PD+I+NPH
Sbjct: 896 DNDQALIKVLLRQSRRPELGDKFSSRHGQKGVCGIIVQQEDMPFSD-QGVVPDIIMNPHG 954
Query: 892 FPSRMTIAMLLESVAAK 908
FPSRMT+ ++E V+ K
Sbjct: 955 FPSRMTVGKMIELVSGK 971
>gi|299741189|ref|XP_001834288.2| DNA-directed RNA polymerase [Coprinopsis cinerea okayama7#130]
gi|298404597|gb|EAU87529.2| DNA-directed RNA polymerase [Coprinopsis cinerea okayama7#130]
Length = 1149
Score = 278 bits (710), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 261/993 (26%), Positives = 426/993 (42%), Gaps = 165/993 (16%)
Query: 9 FEPLRELVRHHIESFDYMLDEGLS----------------------------------EM 34
F ++ LV+ HI+SF+Y +D + E
Sbjct: 39 FLKVKGLVKQHIDSFNYFVDVDIKNIVKANNKVTSDVDPRFWLKYTDINVGFPDRNEMEA 98
Query: 35 FD------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGA 88
D CR +Y+ ++ +++ G +V+ N G+ P+ML++ +C L G
Sbjct: 99 IDKRVTPHECRLRDTTYSAPIIVTIQYT---RGKSIVQRNVNIGRLPIMLRSNKCVLTGK 155
Query: 89 DSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVV 148
+L + E + GGYF++ G E+V +++ +Q ++ + D +G +
Sbjct: 156 TEAQLARMTECPLDPGGYFVVKGTEKV---ILVQEQLSKNRIIVET--DNVKGIVQAS-- 208
Query: 149 IRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYL--------LPVGIVLKALVDTNDLE 200
C + K Y + +G+ YL +P+ I LKAL +D E
Sbjct: 209 --CTSSTHGGLKSKTYVITK---------KGRIYLRHNSIHEDVPIVIALKALGIQSDKE 257
Query: 201 IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQD---LSLTTRLQCLQHIGEHFQP 257
I LT E+YK I A ++D L + TR Q L++IG +
Sbjct: 258 IL-LLTAGNTEEYKT---------------IFSANIEDAAKLGIFTRHQALEYIGARVKV 301
Query: 258 --VIDGLQSESYYAVAE---TVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDN 312
+ G + ++ E T++ ++ V D K + M +++ +D S+ D+
Sbjct: 302 NRKVMGPRRPAWEEALEALATIVLAHVPVQGLDFRAKAIFVATMTRRVLMAMDDESMVDD 361
Query: 313 PDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGK--KFDFFNLANIKKVM 370
D + N+ + L G L+ + ++ + + K I ++ + +FD FN ++
Sbjct: 362 RDYVGNKRLELAGQLLALLFEDLFKTYNSNLKSAIDKVLKKPSRTSEFDAFNTMQMQ--- 418
Query: 371 EKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASF 430
+ + + TG + + +RAG T RL+F+ + + + F
Sbjct: 419 ----GDHLTSGFVRAISTGNWSLKRFK--MERAGVTHVLSRLSFISALGMMTRI--SSQF 470
Query: 431 AGLRTTS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMR 489
R S R L P WG LCP TP+GE CGL+ ++ + + + IR
Sbjct: 471 EKTRKVSGPRALQPSQWGVLCPSDTPEGEACGLVKNLALMTHITTDVEEGPIIR------ 524
Query: 490 TSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAA 549
L ++GV I SL + P V ++G ++GV + K V+ R K+ A
Sbjct: 525 ---LAFMLGVEDI-SLTTGTEIYGPNSYVVYINGTIIGVTRTPT--KFVSQFR--KLRRA 576
Query: 550 SVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIG------P 603
+ +V + + + +++ + + RP+ + + ++
Sbjct: 577 RRFSE-----FVSVYINHHHRAVHIASDGGRICRPMIIVEKGRSRVTSDHIVQLKKGNVT 631
Query: 604 FEQVFMEIRCPDGGDGGRRN-AFPATHE----------EIHPTGMLSVVANLTPYSDHNQ 652
F+ F+ + D N F A HE EI P +L VA L PY HNQ
Sbjct: 632 FDD-FLRKGLVEYLDVNEENDTFIALHEHDIVPTTTHLEIEPFTILGAVAGLIPYPHHNQ 690
Query: 653 SPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNA 712
SPRN YQC M KQ +G R D LY PQ P+V+T T G D P G NA
Sbjct: 691 SPRNTYQCAMGKQAIGAIAYNQMNRIDTLLYLSVYPQQPMVKTRTIELIGYDRLPAGQNA 750
Query: 713 IVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKV-DR-GQKLFRRNK 770
VA+++Y+GYD+EDA+ILNK+S+DRG Q+ + L N DR N
Sbjct: 751 TVAIMSYSGYDIEDALILNKASLDRGYGRCQVLRKNATLLRKYPNGTFDRLADAPLDENG 810
Query: 771 DAKSLHSVIDSDGLPYVGQMIHPGEPYC---SIYDKTTNSWRTN-----------SRKGS 816
+ + ++ +DGLP VG+ + PG+ Y S + T N++ S K
Sbjct: 811 QIQRRYDIVQADGLPGVGERVDPGDIYVNKQSPTNATDNTFTGQAASVPYKNAPLSYKSP 870
Query: 817 ESVFVDYVAV-DMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPF 875
+D V + D N + L + R TR P +GDKFSSRHGQKGVC + D+PF
Sbjct: 871 VCGMIDKVMISDTDNDQTL---IKVLIRQTRRPELGDKFSSRHGQKGVCGLIVNQEDLPF 927
Query: 876 SGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
+ G+ PD I+NPH FPSRMT+ ++E +A K
Sbjct: 928 NE-DGIVPDTIMNPHGFPSRMTVGKMIELLAGK 959
>gi|254584222|ref|XP_002497679.1| ZYRO0F11066p [Zygosaccharomyces rouxii]
gi|238940572|emb|CAR28746.1| ZYRO0F11066p [Zygosaccharomyces rouxii]
Length = 1143
Score = 277 bits (709), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 260/975 (26%), Positives = 422/975 (43%), Gaps = 138/975 (14%)
Query: 9 FEPLRELVRHHIESFDYMLDEGLSEMFD-------------------------------- 36
F ++ LV+ H++SF+Y +D L ++
Sbjct: 48 FLKVKGLVKQHLDSFNYFVDVDLKKIIKANQLILSDVDPEFYLKYVDIRVGQRSNASSKD 107
Query: 37 ------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADS 90
CR ++Y+ + D+E Y + ++ + G+ P+ML++ +C L +D
Sbjct: 108 YLTPPHECRLRDMTYSAPIYVDIE--YTRGRNIIMHKDVEIGRMPIMLRSNKCILHNSDE 165
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
+ + L E + GGYFI+NG E+V IL ++ S R E KA+V
Sbjct: 166 KTMARLNECPLDPGGYFIVNGTEKV----ILVQEQL------SKNRIIVEADEKKAIVQA 215
Query: 151 CVRKDQSSVTLKLYYLL-NGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY 209
V K Y + N + L +E +P+ +VLKA +DLE+ L C
Sbjct: 216 SVTSSTHERKSKTYVVTKNDKIYLKHNSIAEE--VPIVVVLKACGIVSDLEVM-QLVCGN 272
Query: 210 DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPV----IDGLQSE 265
D Y+ + + L E L L T+ Q L++IG + V + LQ E
Sbjct: 273 DSSYQ------------DIFAVNLEEASKLGLYTQQQALEYIGSKVKTVRRQKLSVLQ-E 319
Query: 266 SYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPG 325
A+A TVI ++ V D +K + M +++ + + + D+ D + N+ + L G
Sbjct: 320 GIEAIATTVIA-HLTVAALDFREKALYIAMMTRRVVMAMQNYKMVDDRDYVGNKRLELAG 378
Query: 326 HLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETM 385
LI++ ++ + + K I ++ + ++ L +I S I + +
Sbjct: 379 QLISLLFEDLFKKFNNDFKASIDKVLKKPNRAMEYDALLSINV-----HSNNITSGLSRA 433
Query: 386 LKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLLPE 444
+ TG + + +RAG T RL+++ + + + F R S R L P
Sbjct: 434 ISTGNWSLKRFK--MERAGVTHVLSRLSYISALGMMTRI--SSQFEKSRKVSGPRALQPS 489
Query: 445 SWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPS 504
+G LC TP+GE CGL+ ++ + + D + L ++GV I
Sbjct: 490 QFGMLCTADTPEGEACGLVKNLALMTHITT---------DDEEEPIKKLCFILGVEDIT- 539
Query: 505 LPKLVKSGPPAV-LSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPL 563
L+ S + V L+G ++G K V+ R L+ S I + ++ +
Sbjct: 540 ---LIDSASLHLHYGVYLNGTLIGTTKFPV--KFVSQFRNLRRSGK--ISE-----FISI 587
Query: 564 SLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFE-----QVFMEIRCPDGGD 618
+ +++ T + RP+ +S + L E F+++ + D
Sbjct: 588 YTNSHHKAVHIATDGGRICRPLIIVSNGKSRVTSEHLKELLEGRLVFDDFLKLGLVEYLD 647
Query: 619 GGRRN-AFPA----------THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTM 667
N +F A TH EI P +L A L PY HNQSPRN YQC M KQ +
Sbjct: 648 VNEENDSFIALYEQDIAPEITHMEIEPFTVLGACAGLIPYPHHNQSPRNTYQCAMGKQAI 707
Query: 668 GFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDA 727
G R D LY + PQ P+V+T T D+ P G NA VA+++Y+GYD+EDA
Sbjct: 708 GAIAYNQFKRIDTLLYLMIYPQQPMVKTKTIELIDYDKLPAGQNATVAIMSYSGYDIEDA 767
Query: 728 MILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSL--HSVIDSDGLP 785
++LNKSS+DRG + + T L N R N++ + + H + DGL
Sbjct: 768 LVLNKSSIDRGFGRCETRRKTTAVLKRYPNHTQDIIGGMRVNENGEPIWQHKSLGPDGLG 827
Query: 786 YVGQMIHPGEPYCS----------IYDKTTNSWRTNS--RKGSESVFVDYVAVDMKNSKN 833
VG + G+ Y + + +T + +R + E +D V M S N
Sbjct: 828 EVGMKLDSGQIYINKSVPTNASEGVLTQTQSQYRETPVIYRAPEPSHIDQVM--MSVSDN 885
Query: 834 LPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFP 893
+ R R P +GDKFSSRHGQKGVC + DMPFS G+ PD+I+NPH FP
Sbjct: 886 DQALIKVLLRQNRRPELGDKFSSRHGQKGVCGIIVQQEDMPFSD-QGVVPDIIMNPHGFP 944
Query: 894 SRMTIAMLLESVAAK 908
SRMT+ ++E ++ K
Sbjct: 945 SRMTVGKMIELISGK 959
>gi|410081580|ref|XP_003958369.1| hypothetical protein KAFR_0G02000 [Kazachstania africana CBS 2517]
gi|372464957|emb|CCF59234.1| hypothetical protein KAFR_0G02000 [Kazachstania africana CBS 2517]
Length = 1148
Score = 277 bits (709), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 259/975 (26%), Positives = 432/975 (44%), Gaps = 138/975 (14%)
Query: 9 FEPLRELVRHHIESFDYMLDEGLSEMFD-------------------------------- 36
F ++ LV+ H++SF+Y +D L ++
Sbjct: 53 FLKVKGLVKQHLDSFNYFVDIDLKKIIKANQTILSDVDPEFYLKYVDIRIGKKSTSSTKD 112
Query: 37 ------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADS 90
CR ++Y+ + D+E Y + ++ + G+ P+ML++ +C L G D
Sbjct: 113 YLTPPHECRLRDMTYSAPIYVDIE--YTRGRNIIMHKDVEIGRMPIMLRSNKCTLYGCDE 170
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
++ L E + GGYFI+NG E+V +++ +Q ++ + D ++G +V
Sbjct: 171 AEMAKLNECPLDPGGYFIVNGTEKV---ILVQEQLSKNRIIVEA--DEKKGIVQASVTSS 225
Query: 151 C-VRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY 209
RK ++ V K N + L +E +P+ IVLKA ++LEI L C
Sbjct: 226 THERKSKTYVVTK-----NDKIYLKHNSISEE--IPIVIVLKACGVVSELEIM-QLVCGN 277
Query: 210 DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPV----IDGLQSE 265
D Y+ + + + E ++ T+ Q L++IG + + + LQ E
Sbjct: 278 DSSYQ------------DIFAVNIEEASKFNIYTQQQALEYIGAKVKTMRRQKLTVLQ-E 324
Query: 266 SYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPG 325
A+A TVI LN +K + M +++ + + + D+ D + N+ + L G
Sbjct: 325 GIEAIATTVIAHLTVEALN-FREKALYMAMMTRRVVMAMHNPKMVDDRDYVGNKRLELAG 383
Query: 326 HLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETM 385
LI++ ++ + + K I ++ + ++ L +I S I + +
Sbjct: 384 QLISLLFEDLFKKFNSDFKASIDKVLKKPNRAMEYDALLSINV-----HSNNITSGLNRA 438
Query: 386 LKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLLPE 444
+ TG + + +RAG T RL+++ + + + F R S R L P
Sbjct: 439 ISTGNWSLKRFK--MERAGVTHVLSRLSYISALGMMTRI--SSQFEKSRKVSGPRALQPS 494
Query: 445 SWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPS 504
+G LC TP+GE CGL+ ++ + + D + L ++GV I
Sbjct: 495 QFGMLCTADTPEGEACGLVKNLALMTHITT---------DDEEEPIKKLCYVLGVEDI-- 543
Query: 505 LPKLVKSGPPAV-LSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPL 563
L+ S + SV L+G ++G + K V+H R L+ S ++ +
Sbjct: 544 --NLIDSASLHLNYSVFLNGTLIG--SARFPRKFVSHFRALRRSCKVS-------AFISI 592
Query: 564 SLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQ----NIELIGPFEQVF---MEIRCPDG 616
+++ T + RP+ I + + ES +++ + E VF +++ +
Sbjct: 593 HTNSEQKAVHIATDGGRICRPL--IIVTNGESHVKAHHLKRLLEGELVFDDFLKLGLVEY 650
Query: 617 GDGGRRN-AFPA----------THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQ 665
D N +F A TH EI P +L VA L PY HNQSPRN YQC M KQ
Sbjct: 651 LDVNEENDSFIALYEKDIDQAVTHLEIEPFTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQ 710
Query: 666 TMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDME 725
+G R D LY + PQ P+V+T T D+ P G NA VAV++Y+GYD+E
Sbjct: 711 AIGAIAYNQFKRIDTLLYLMIYPQQPMVKTKTIELIDYDKLPAGQNATVAVMSYSGYDIE 770
Query: 726 DAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSL--HSVIDSDG 783
DA++LNK+S+DRG + + T L N R ++ + + H + DG
Sbjct: 771 DALVLNKASLDRGFGRCETRRKTTTVLKRYPNHTQDIIGGMRVDEKGEPIWQHKALGPDG 830
Query: 784 LPYVGQMIHPGEPYC--SIYDKTTNSWRTNSRKGSESVFVDYVA--------VDMKNSKN 833
L VG + G+ Y S+ +T+++ ++ V Y A V M S N
Sbjct: 831 LGEVGMKLDSGQIYINKSVPTNSTDAFNGAAQASYRETPVIYRAPEPSHIDQVMMSVSDN 890
Query: 834 LPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFP 893
+ R R P +GDKFSSRHGQKGVC + DMPF+ G+ PD+I+NPH FP
Sbjct: 891 DQALIKVLLRQHRRPELGDKFSSRHGQKGVCGIIVKQEDMPFND-QGVVPDIIMNPHGFP 949
Query: 894 SRMTIAMLLESVAAK 908
SRMT+ ++E V+ K
Sbjct: 950 SRMTVGKMIELVSGK 964
>gi|345568411|gb|EGX51305.1| hypothetical protein AOL_s00054g375 [Arthrobotrys oligospora ATCC
24927]
Length = 1166
Score = 277 bits (709), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 262/992 (26%), Positives = 424/992 (42%), Gaps = 163/992 (16%)
Query: 9 FEPLRELVRHHIESFDYMLDEGLSEMF--------------------------------- 35
F ++ LV+ H++SF+Y D L ++
Sbjct: 59 FLKVKGLVKQHLDSFNYFCDVELKQIIKANEMVVSEVDPNFFLRYVDIRVGLPERQDSDS 118
Query: 36 ------DHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGAD 89
+ CR ++Y + D+ QY+ + + R N G+ P+ML++ +C L
Sbjct: 119 DADITPNECRLRDMTYAAPVFVDI--QYVRGKAVIARNGVNIGRLPIMLRSNKCVLTNKS 176
Query: 90 SQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVI 149
++ LKE + GGYFI+NG E+V IL ++ S R E T K +V
Sbjct: 177 EHEMAVLKECPLDPGGYFIINGTEKV----ILVQEQL------SKNRIIVEADTKKQIV- 225
Query: 150 RCVRKDQSSVTLKLY------YLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFN 203
Q+SVT + Y+L+ + +P+ +VLKAL +D EI
Sbjct: 226 ------QASVTSSTHERKSNTYVLSKKGAIYLRHNSVSEDVPIVLVLKALGIQSDHEIL- 278
Query: 204 HLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQ 263
+ D Y+ + + E L + T+ Q L + G + L
Sbjct: 279 LMVAGTDSVYQ------------DTFSVNFEECSKLGVFTQQQALDYFGARVRTSRKILT 326
Query: 264 SESYYA-VAETVIRDYIFVHLNDNNDKFN----LLIFMLQKLFSLVDHTSVSDNPDSLQN 318
+ YA A + + H+ N F + M +++ + + + D+ D + N
Sbjct: 327 TRKSYAHEALEALATIVLAHVPVKNLNFRPKALYIAVMTRRILMAMANPQLVDDRDYVGN 386
Query: 319 QEILLPGHLITIYLKEKLEDWLRKGKKLIQDEI---ENNGKKFDFFNLANIKKVMEKNPS 375
+ + L G L+++ L E L K+ D+I N ++FD +N+ +
Sbjct: 387 KRLELAGQLLSL-LFEDLFKRFNGELKMNIDKILKKPNRTEEFDAYNILS-------GHG 438
Query: 376 KQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRT 435
I + + TG + + +RAG T RL+++ + + + F R
Sbjct: 439 HTITQGMNRAISTGNWSLKRFK--MERAGVTHVLSRLSYISALGMMTRI--SSQFEKTRK 494
Query: 436 TS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILR 494
S R L P +G LCP TP+GE CGL+ ++ + + D IR L
Sbjct: 495 VSGPRALQPSQFGMLCPSDTPEGEACGLVKNLALMTHITTDDDEEHVIR---------LA 545
Query: 495 VLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVI--PSSEIEKVVAHLRRLKVSAASVI 552
+++G + ++ P A + + ++G G+ P+ + + R K+S
Sbjct: 546 MVLGAEDVLAVSGQELYAPGAYV-IFMNGTPFGITRYPARFLTRFRKMRRMGKISE---- 600
Query: 553 PDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQ----NIELIGP----F 604
+V + + G+++ T + RP+ I + +++S+ +I+ + F
Sbjct: 601 -------FVSIFINHHQGGVHIATDGGRICRPL--IIVENKKSKVTLRHIKSLKAGKMTF 651
Query: 605 EQVFMEIRCPDGGDGGRRN-----------AFPATHEEIHPTGMLSVVANLTPYSDHNQS 653
E F++ + D N + TH EI P +L VA L P+ HNQS
Sbjct: 652 ED-FLKKGLVEYVDVNEENDAHIAIYEHEISASTTHLEIEPFTILGAVAGLIPFPHHNQS 710
Query: 654 PRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAI 713
PRN YQC M KQ +G R D LY + PQ P+V+T T D+ P G NA+
Sbjct: 711 PRNTYQCAMGKQAIGAIAYNQFLRIDTLLYLMVYPQQPMVKTRTIELIKYDKLPAGQNAV 770
Query: 714 VAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNK-VDR-GQKLFRRNKD 771
VAV++Y+GYD+EDA++LNKSSVDRG Q+ + L N+ +DR G + +
Sbjct: 771 VAVMSYSGYDIEDALVLNKSSVDRGFGRCQVLRKYVTTLKKHPNQTMDRIGDRKSDEEGN 830
Query: 772 AKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNS 831
H +I+ DGL VG+ I GE Y I + N +G ++ DY M
Sbjct: 831 PIKKHRIIEGDGLAAVGERIEQGESY--ILKQVPTHTANNPAEGPQNRLGDYKDAAMNYK 888
Query: 832 KNLPQKAN---------------IRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFS 876
P + + R TR P +GDKFSSRHGQKGVC + DMPF+
Sbjct: 889 LTDPAYIDKVMISCSESEQTIIKVLTRQTRRPELGDKFSSRHGQKGVCGIIVQQEDMPFN 948
Query: 877 GVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
G PD+I+NPH FPSRMT+ ++E +A K
Sbjct: 949 DF-GTCPDIIMNPHGFPSRMTVGKMIELLAGK 979
>gi|365758302|gb|EHN00152.1| Ret1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 1149
Score = 277 bits (709), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 258/978 (26%), Positives = 429/978 (43%), Gaps = 141/978 (14%)
Query: 9 FEPLRELVRHHIESFDYMLDEGLSEMFD-------------------------------- 36
F ++ LV+ H++SF+Y +D L ++
Sbjct: 51 FLKVKGLVKQHLDSFNYFVDTDLKKIIKANQLILSDVDPEFYLKYIDIRVGKKSSSSTKD 110
Query: 37 ------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADS 90
CR ++Y+ + D+E Y + ++ + G+ P+ML++ +C L AD
Sbjct: 111 YLTPPHECRLRDMTYSAPIYVDIE--YTRGRNIIMHKDVEIGRMPIMLRSNKCILYDADE 168
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
K+ L E + GGYFI+NG E+V +++ +Q ++ + D ++G +V
Sbjct: 169 SKMAKLNECPLDPGGYFIVNGTEKV---ILVQEQLSKNRIIVEA--DEKKGIVQASVTSS 223
Query: 151 C-VRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY 209
RK ++ V K NG + L +E +P+ IVLKA +DLEI L C
Sbjct: 224 THERKSKTYVITK-----NGKIYLKHNSIAEE--IPIAIVLKACGILSDLEIM-QLVCGN 275
Query: 210 DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPV----IDGLQSE 265
D Y+ + + L E L + T+ Q L++IG + + + LQ E
Sbjct: 276 DSSYQ------------DIFAVNLEESSKLDIYTQQQALEYIGAKVKTMRRQKLTILQ-E 322
Query: 266 SYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPG 325
A+A TVI ++ V D +K + M +++ + + + D+ D + N+ + L G
Sbjct: 323 GVEAIATTVIA-HLTVEALDFREKALYIAMMTRRVVMAMYNPKMIDDRDYVGNKRLELAG 381
Query: 326 HLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETM 385
LI++ ++ + + K I ++ + ++ L +I S I + +
Sbjct: 382 QLISLLFEDLFKKFNNDFKLSIDKVLKKPNRAMEYDALLSINV-----HSNNITSGLNRA 436
Query: 386 LKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLLPE 444
+ TG + + +RAG T RL+++ + + + F R S R L P
Sbjct: 437 ISTGNWSLKRF--KMERAGVTHVLSRLSYISALGMMTRI--SSQFEKSRKVSGPRALQPS 492
Query: 445 SWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPS 504
+G LC TP+GE CGL+ ++ + + D I++ L ++GV I
Sbjct: 493 QFGMLCTADTPEGEACGLVKNLALMTHITT-DDEEEPIKN--------LCYVLGVEDI-- 541
Query: 505 LPKLVKSGPPAV-LSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPL 563
L+ S + V L+G ++G I K V R L+ + ++ +
Sbjct: 542 --TLIDSASLHLNYGVYLNGTLIGSIRFP--IKFVTQFRNLRRTGKV-------SEFISI 590
Query: 564 SLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFE-----QVFMEIRCPDGGD 618
+++ T + RP+ +S ++ L + F+++ + D
Sbjct: 591 YSNSHQMAVHIATDGGRICRPLIIVSSGQSRVKDTHLRQLLDGKLDFDDFLKLGLVEYLD 650
Query: 619 GGRRN-AFPATHE----------EIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTM 667
N ++ A +E EI P +L VA L PY HNQSPRN YQC M KQ +
Sbjct: 651 VNEENDSYIALYEKDIVPSMTHLEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAI 710
Query: 668 GFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDA 727
G R D LY + PQ P+V+T T D+ P G NA VAV++Y+GYD+EDA
Sbjct: 711 GAIAYNQFKRIDTLLYLMTYPQQPMVKTKTIELIDYDKLPAGQNATVAVMSYSGYDIEDA 770
Query: 728 MILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSL--HSVIDSDGLP 785
++LNKSS+DRG + + T L N R +++ + + H + DGL
Sbjct: 771 LVLNKSSIDRGFGRCETRRKTTTVLKRYANHTQDIIGGMRVDENGEPIWQHQSLGPDGLG 830
Query: 786 YVGQMIHPGEPYCSIYDKTTNSWRTNSR---------------KGSESVFVDYVAVDMKN 830
VG + G+ Y + T ++ N +G E +D V M
Sbjct: 831 EVGMKVQSGQIYINKSVPTNSADAPNPNIVNVQTQYREAPVIYRGPEPSHIDQVM--MSV 888
Query: 831 SKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPH 890
S N + R +R P +GDKFSSRHGQKGVC + DMPF+ G+ PD+I+NPH
Sbjct: 889 SDNDQALIKVLLRQSRRPELGDKFSSRHGQKGVCGIIVKQEDMPFND-QGIVPDIIMNPH 947
Query: 891 AFPSRMTIAMLLESVAAK 908
FPSRMT+ ++E ++ K
Sbjct: 948 GFPSRMTVGKMIELISGK 965
>gi|66517310|ref|XP_625037.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 isoform 1
[Apis mellifera]
Length = 1134
Score = 277 bits (709), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 251/913 (27%), Positives = 414/913 (45%), Gaps = 107/913 (11%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR ++Y+ + D+E Y+ P+++ G+ P+ML++ C L G +L +
Sbjct: 104 CRLRDLNYSAPITVDIE--YIRGHQPIIKNNLLIGRMPIMLRSSNCVLTGKSHFELAKMN 161
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
E + GGYFI+NG E+V +++ +Q M+R+ R E + +V C +
Sbjct: 162 ECPHDPGGYFIVNGQEKV---ILIQEQ-----MLRN--RIILEEDSKGCIVASC-----N 206
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYL---LPVGIVLKALVDTNDLEIFNHLTCCYDEKYK 214
SVT + N R G + +PV I+ KA+ +D EI + +E++
Sbjct: 207 SVTHERKTKTNIVGRAGRYYMRHNIFQDDIPVTIIFKAMGIVSDQEIMQLIGT--EEEFM 264
Query: 215 KEKGAVGSPLVSE-RVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAET 273
K+ +P + E V + A+ Q L + + + F + + E A+A
Sbjct: 265 KK----FAPSLEECHVLNVFAQNQALRFLSN----KRKQKRFSVIKSSITDEMKDALATN 316
Query: 274 VIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLK 333
++ + N K + M++K+ + D+ D N+ + L G L+++ +
Sbjct: 317 ILSHVPVIDFNFKM-KATYIALMIRKVMKAQSDGKLVDDRDYYGNKRLELAGSLLSLMFE 375
Query: 334 EKLEDWLRKGKKLIQDEIEN-NGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLA 392
+ + + + K++ I +FD I K M ++ QI + + +G
Sbjct: 376 DLFKRFNWELKQIADKNIPKIKAAQFD------IVKHMRQD---QITNGLAFAISSGNWT 426
Query: 393 TQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLLPESWGFLCP 451
+ +R G T RL+++ + V+ + F R S R L P WG LCP
Sbjct: 427 IKRFK--MERHGVTQVLSRLSYISALGMMTRVN--SQFEKTRKVSGPRSLQPSQWGMLCP 482
Query: 452 VHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKS 511
TP+GE CGL+ ++ + + D IR + + +L G +
Sbjct: 483 SDTPEGEGCGLVKNLALMTHITTEIDEEPIIRLAFNLGVENVNILGGEEI---------- 532
Query: 512 GPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPG 571
V V L+G ++G++ + +++V R L+ L G+V + +
Sbjct: 533 NNKNVYMVFLNGNILGIVKN--YQRLVNVFRLLRRKG-------LINGFVSIYTQHQHRC 583
Query: 572 LYLFTSPPKFVRP---VRNISLPSEESQNIEL----IGPFEQVFMEIRCPDGGDGGRRN- 623
+ + + + RP V+N P + ++++L I FE F++ + D N
Sbjct: 584 IQISSDGGRLCRPYIIVQN-GDPLVQEEHVKLLEQGIRSFED-FLQDGLIEYLDVNEEND 641
Query: 624 ---AF-------PATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQA 673
AF TH EI P +L V A L PY HNQSPRN YQC M KQ MG
Sbjct: 642 SSIAFNESHINEKTTHLEIEPFTLLGVCAGLVPYPHHNQSPRNTYQCAMGKQAMGTIGYN 701
Query: 674 LKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKS 733
+ R D +Y+L PQTP+V++ T D+ P G NA +AV++Y+GYD+EDA+ILNK+
Sbjct: 702 QRNRIDTLMYNLVYPQTPMVKSRTIELINFDKLPAGQNATIAVMSYSGYDIEDALILNKA 761
Query: 734 SVDRGMCHGQIYQTETIDLSDDGNKV-DR--GQKLFRRNKDAKSLHSVIDSDGLPYVGQ- 789
S+DRG +Y+ L N+ DR G + K + H +IDSDG+ G+
Sbjct: 762 SIDRGFGRCLVYRNAKCTLKRYANQTYDRIMGPLIDANTKKSVWKHEIIDSDGIAAPGEM 821
Query: 790 ------MIHPGEPYCSIYDKTTNSWRTNSR--------KGSESVFVDYVAVDMKNSKNLP 835
M++ P +I + + +T + KG +++ V +
Sbjct: 822 VENRKVMVNKSSPAANIGPVNSGNVQTQTEYKDVPVVFKGPVPAYIEKVMISSNAEDAFL 881
Query: 836 QKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSR 895
K + R TR P IGDKFSSRHGQKGV + DMPF+ G+ PD+I+NPH FPSR
Sbjct: 882 IK--LLLRQTRRPEIGDKFSSRHGQKGVVGLIVEQEDMPFNDY-GICPDMIMNPHGFPSR 938
Query: 896 MTIAMLLESVAAK 908
MT+ L+E +A K
Sbjct: 939 MTVGKLIELLAGK 951
>gi|380017785|ref|XP_003692825.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Apis
florea]
Length = 1134
Score = 276 bits (707), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 251/913 (27%), Positives = 414/913 (45%), Gaps = 107/913 (11%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR ++Y+ + D+E Y+ P+++ G+ P+ML++ C L G +L +
Sbjct: 104 CRLRDLNYSAPITVDIE--YIRGHQPIIKNNLLIGRMPIMLRSSNCVLTGKSHFELAKMN 161
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
E + GGYFI+NG E+V +++ +Q M+R+ R E + +V C +
Sbjct: 162 ECPHDPGGYFIVNGQEKV---ILIQEQ-----MLRN--RIILEEDSKGCIVASC-----N 206
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYL---LPVGIVLKALVDTNDLEIFNHLTCCYDEKYK 214
SVT + N R G + +PV I+ KA+ +D EI + +E++
Sbjct: 207 SVTHERKTKTNIVGRAGRYYMRHNIFQDDIPVTIIFKAMGIVSDQEIMQLIGT--EEEFM 264
Query: 215 KEKGAVGSPLVSE-RVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAET 273
K+ +P + E V + A+ Q L + + + + + + E A+A
Sbjct: 265 KK----FAPSLEECHVLNVFAQNQALRFLSN----KRKQKRYSVIKSSITDEMKDALATN 316
Query: 274 VIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLK 333
++ + N K + M++K+ + D+ D N+ + L G L+++ +
Sbjct: 317 ILSHVPVIDFNFKM-KATYIALMIRKVMKAQSDGKLVDDRDYYGNKRLELAGSLLSLMFE 375
Query: 334 EKLEDWLRKGKKLIQDEIEN-NGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLA 392
+ + + + K++ I +FD I K M ++ QI + + +G
Sbjct: 376 DLFKRFNWELKQIADKNIPKIKAAQFD------IVKHMRQD---QITNGLAFAISSGNWT 426
Query: 393 TQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLLPESWGFLCP 451
+ +R G T RL+++ + V+ + F R S R L P WG LCP
Sbjct: 427 IKRFK--MERHGVTQVLSRLSYISALGMMTRVN--SQFEKTRKVSGPRSLQPSQWGMLCP 482
Query: 452 VHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKS 511
TP+GE CGL+ ++ + + D IR + + +L G +
Sbjct: 483 SDTPEGEGCGLVKNLALMTHITTEIDEEPIIRLAFNLGVENVNILGGEEI---------- 532
Query: 512 GPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPG 571
V V L+G ++G++ + +++V R L+ L G+V + +
Sbjct: 533 NNKNVYMVFLNGNILGIVKN--YQRLVNVFRLLRRKG-------LINGFVSIYTQHQHRC 583
Query: 572 LYLFTSPPKFVRP---VRNISLPSEESQNIEL----IGPFEQVFMEIRCPDGGDGGRRN- 623
+ + + + RP V+N P + ++I+L I FE F++ + D N
Sbjct: 584 IQISSDGGRLCRPYIIVQN-GDPLVQEEHIKLLEQGIRSFED-FLQDGLIEYLDVNEEND 641
Query: 624 ---AF-------PATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQA 673
AF TH EI P +L V A L PY HNQSPRN YQC M KQ MG
Sbjct: 642 SSIAFNESHINEKTTHLEIEPFTLLGVCAGLVPYPHHNQSPRNTYQCAMGKQAMGTIGYN 701
Query: 674 LKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKS 733
+ R D +Y+L PQTP+V++ T D+ P G NA +AV++Y+GYD+EDA+ILNK+
Sbjct: 702 QRNRIDTLMYNLVYPQTPMVKSRTIELINFDKLPAGQNATIAVMSYSGYDIEDALILNKA 761
Query: 734 SVDRGMCHGQIYQTETIDLSDDGNKV-DR--GQKLFRRNKDAKSLHSVIDSDGLPYVGQ- 789
S+DRG +Y+ L N+ DR G + K + H +IDSDG+ G+
Sbjct: 762 SIDRGFGRCLVYRNAKCTLKRYANQTYDRIMGPLIDGNTKKSVWKHEIIDSDGIAAPGEM 821
Query: 790 ------MIHPGEPYCSIYDKTTNSWRTNSR--------KGSESVFVDYVAVDMKNSKNLP 835
M++ P +I + + +T + KG +++ V +
Sbjct: 822 VENRKVMVNKSSPAANIGPVNSGNVQTQTEYKDVPVVFKGPVPAYIEKVMISSNAEDAFL 881
Query: 836 QKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSR 895
K + R TR P IGDKFSSRHGQKGV + DMPF+ G+ PD+I+NPH FPSR
Sbjct: 882 IK--LLLRQTRRPEIGDKFSSRHGQKGVVGLIVEQEDMPFNDY-GICPDMIMNPHGFPSR 938
Query: 896 MTIAMLLESVAAK 908
MT+ L+E +A K
Sbjct: 939 MTVGKLIELLAGK 951
>gi|255721739|ref|XP_002545804.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Candida
tropicalis MYA-3404]
gi|240136293|gb|EER35846.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Candida
tropicalis MYA-3404]
Length = 1159
Score = 276 bits (707), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 253/947 (26%), Positives = 408/947 (43%), Gaps = 163/947 (17%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRER-FNFGQFPVMLKTRRCHLQGADSQKLVSL 96
CR ++Y+ + DVE+ G ++R G+ PVML++ +C L+G + +
Sbjct: 118 CRLRDLTYSAPIYVDVEYT---RGRKIIRHNDLEIGRMPVMLRSNKCMLEGMSEASMAQV 174
Query: 97 KEEAAEMGGYFILNGLERVF-------RSVILPKQNYPMSMVRSSFRDRREGYTDKAVVI 149
+E + GGYF++NG E+V ++ I+ + + ++V++S K VI
Sbjct: 175 EECPLDPGGYFVVNGTEKVILVQEQLSKNRIIVEADEKKAIVQASVTSSTHERKSKTYVI 234
Query: 150 RCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY 209
+ D+ YL + SV +P+ I+LKA T+DLEI L C
Sbjct: 235 --TKNDK-------IYLKHNSVSED---------IPIVIILKAAGITSDLEIL-QLVCGT 275
Query: 210 DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQ-------PVIDGL 262
D Y+ + + E L + T+ Q L ++G+ + P + L
Sbjct: 276 DPNYQ------------DLFVVNFEEAAKLEVFTQQQALLYVGKRVKTIRRAGAPKLSQL 323
Query: 263 QSESYYAVAETVIRDYIFVHLNDNNDKFN----LLIFMLQKLFSLVDHTSVSDNPDSLQN 318
Q E A+A T++ HL ++ +F + M +++ + + + D+ D + N
Sbjct: 324 Q-EGIEAIATTIV-----AHLTVSDLQFREKALYIATMARRVVMAMHNPKMVDDRDYVGN 377
Query: 319 QEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQI 378
+ + L G L+++ ++ + + K I ++ + +F L +I S I
Sbjct: 378 KRLELAGQLMSLLFEDLFKKFNSDFKANIDKVLKKPSRTSEFDALLSINI-----HSNNI 432
Query: 379 GTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS- 437
+ + TG + + +RAG T RL+++ + + + F R S
Sbjct: 433 TMGLNRAISTGNWSLKRFK--MERAGVTHVLSRLSYISALGMMTRI--SSQFEKSRKVSG 488
Query: 438 VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLI 497
R L P +G LC TP+GE CGL+ ++ + + D + L + +
Sbjct: 489 PRALQPSQFGMLCTADTPEGEACGLVKNLALMTHITT---------DDEEAPVKKLCIAL 539
Query: 498 GVGMIPSLPKLVKSGPPAVLSVLLDGRVVGV--IPSSEIEKVVAHLRRL-KVSAASVIPD 554
G I +L V L+G ++G P + HLRR KVSA
Sbjct: 540 GCEPIYALDSATLHSE-GNFGVYLNGTLIGTTRFPQKFVNDF-RHLRRNGKVSA------ 591
Query: 555 DLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEES------------------- 595
++ + + +++ T + RP+ I + + ES
Sbjct: 592 -----FISIYTNTHHQAVHIATDGGRICRPL--IIVENGESKVTAEHLAKLLNQEWSFDD 644
Query: 596 --------------QNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVV 641
+N LI +E+ D ++ TH EI P +L V
Sbjct: 645 FLKHGLVEYLDVNEENDSLIALYEE-----------DINANSSTTVTHMEIEPFTVLGAV 693
Query: 642 ANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKY 701
A L PY HNQSPRN YQC M KQ +G R D LY + PQ P+V+T T
Sbjct: 694 AGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFRRIDTLLYFMVYPQQPMVKTKTIELI 753
Query: 702 GIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDR 761
D+ P G NA VAV++Y+GYD+EDA++LNKSS+DRG Q+ + T+ L N
Sbjct: 754 DYDKLPAGQNATVAVMSYSGYDIEDALVLNKSSLDRGFGRCQVVRKNTVQLKKYPNHTQD 813
Query: 762 GQKLFRRNKDAKSL--HSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSW----------R 809
R +++ + H + DGL VG IH G+ + + T + R
Sbjct: 814 ILSGMRVDENNNPIFPHQALGPDGLGEVGSRIHNGQVFANKCVPTNSGESALGGPQQDDR 873
Query: 810 TNSR--------KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQK 861
R KG E ++D V M S N + R TR P +GDKFSSRHGQK
Sbjct: 874 QMDRHREAPAFYKGPEPSYIDQVM--MSVSDNDQALIKVLLRQTRRPELGDKFSSRHGQK 931
Query: 862 GVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
GVC + DMPF+ G+ PD+I+NPH FPSRMT+ ++E ++ K
Sbjct: 932 GVCGIIVQQEDMPFNDY-GISPDIIMNPHGFPSRMTVGKMIELISGK 977
>gi|403182564|gb|EJY57481.1| AAEL017156-PA [Aedes aegypti]
Length = 1134
Score = 276 bits (707), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 258/940 (27%), Positives = 408/940 (43%), Gaps = 154/940 (16%)
Query: 37 HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
CR ++Y + D+E Y VVR G+ P+ML++ C L G +L +
Sbjct: 100 ECRLRDMTYAAPITVDIE--YTRGTQRVVRNNLLIGRMPIMLRSSNCVLTGKSEYELSQV 157
Query: 97 KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQ 156
E + GGYF++ G E+V +++ +Q M+ + + VI+C
Sbjct: 158 NECPMDPGGYFVIRGTEKV---ILIQEQVSWNKMITEDYNN----------VIQCQVTSS 204
Query: 157 SSVTLKLYYLLNGSVRLGFWLQGKEYL--------LPVGIVLKALVDTNDLEIFNHLTCC 208
+ LL+ GK YL +PV I+ KA+ +D EI +
Sbjct: 205 THEKKSRTILLSK--------HGKYYLKHNSMTEEIPVAIIFKAMGIASDQEIMQLVGI- 255
Query: 209 YDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHF---QPVIDGLQSE 265
D + +K R L E + + T+ + L+++G + + +
Sbjct: 256 -DTETQK------------RFAPSLLEATNHKVYTQQRALEYMGSKLIAKRFTTAATKYK 302
Query: 266 SYYAVAETVIRDYIFVHLNDNNDKFNL----LIFMLQKLFSLVDHTSVSDNPDSLQNQEI 321
+ A ++ I H+ N F + + M++++ + S D+ D N+ +
Sbjct: 303 TTADEARDLLATTILAHVPVPNFNFQVKAIYVALMIRRVMAAEVDKSAVDDRDYYGNKRL 362
Query: 322 LLPGHLITIYLKE--KLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKK----VMEKNPS 375
L G L+++ ++ K +W K+I D+ N+ IK V++ +
Sbjct: 363 ELAGSLLSLMFEDLFKRFNW---ELKMIADK-----------NIPKIKAAQFDVVKHMRA 408
Query: 376 KQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRT 435
I T +ET + TG + +RAG T RL+++ + V+ + F R
Sbjct: 409 ALISTGLETAISTGNWTIKRFK--MERAGVTQVLSRLSYISALGMMTRVN--SQFEKTRK 464
Query: 436 TS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILR 494
S R L P WG LCP TP+GE CGL+ ++ + + D IR +R
Sbjct: 465 VSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTEVDEEPVIRLAYNSGVEDIR 524
Query: 495 VLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGV-IPSSEIEKVVAHLRRLKVSAASVIP 553
+L G + P V V ++G ++GV I + +V +RR + +
Sbjct: 525 LLGGETI----------NNPKVFMVFINGNILGVTIGYKRLVEVFRMMRRKGLIGS---- 570
Query: 554 DDLEVGYVPLSLGGAYPGLYLFTSPPKFVRP---VRNISLPSEESQNIELIG----PFEQ 606
+V + +Y+ T + RP V+N P + ++IE + F+
Sbjct: 571 ------FVSIHTSFTQRCVYIHTDGGRLCRPYIIVQN-GRPLVQQEHIEQLKIGLRKFDD 623
Query: 607 VFMEIRCPDGGDGGRRN-AFPA-----------THEEIHPTGMLSVVANLTPYSDHNQSP 654
F+ + D N +F A TH E+ P +L V A L PY HNQSP
Sbjct: 624 -FLHDGLIEYLDVNEENDSFIAYQEVDIDPEKTTHLEVEPFTLLGVCAGLVPYPHHNQSP 682
Query: 655 RNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIV 714
RN YQC M KQ MG K R D +Y++ PQTP+VR+ T D+ P G NA V
Sbjct: 683 RNTYQCAMGKQAMGIIGYNQKNRIDTLMYNIVYPQTPMVRSRTIELTNFDKLPAGQNATV 742
Query: 715 AVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKV-DRGQKLFRRNKDAK 773
AV++Y+GYD+EDA+ILNK+S+DRG +Y+ + N+ DR + + K
Sbjct: 743 AVMSYSGYDIEDALILNKASIDRGYGRCLVYKNSKCTIKRYSNQTFDRIMGPMKDSLTNK 802
Query: 774 SL--HSVIDSDGLPYVGQMIHPGEPYCSIYD---------KTTNSWRTN----------- 811
+ H +D+DG+ I PGE S K+TN
Sbjct: 803 IIFKHECLDTDGI------ISPGEKVLSKQTMVNKEMPAVKSTNPIEQKEAGQQPITYSP 856
Query: 812 ---SRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLW 868
+ KG+E +++ V V N + K I R TR P IGDKFSSRHGQKGV +
Sbjct: 857 VPITYKGTEPSYIEKVMVSTNNEEEFLVK--ILLRQTRRPEIGDKFSSRHGQKGVTGLIV 914
Query: 869 PDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
D+PF+ GM PD+++NPH FPSRMT+ LE + +K
Sbjct: 915 EQEDLPFNDF-GMSPDMVMNPHGFPSRMTVGKTLELLGSK 953
>gi|50310217|ref|XP_455128.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49644264|emb|CAG97835.1| KLLA0F01078p [Kluyveromyces lactis]
Length = 1142
Score = 276 bits (705), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 259/975 (26%), Positives = 430/975 (44%), Gaps = 139/975 (14%)
Query: 9 FEPLRELVRHHIESFDYMLDEGLSEM-------------------------FDH------ 37
F ++ LV+ H++SF+Y +D L ++ + H
Sbjct: 48 FLKVKGLVKQHLDSFNYFVDVDLKKIIKANEVILSDVDPEFYLKYIDIRVGYKHNGNKAI 107
Query: 38 ------CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQ 91
CR ++Y+ + D+E Y S V+ G+ P+ML++ +C L GA
Sbjct: 108 MTPPHECRLRDMTYSTPIFVDIE--YTRGRSIVLHRDVEIGRMPIMLRSNKCILDGAAEN 165
Query: 92 KLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRC 151
+ L E + GGYFI+NG E+V IL ++ + + +++
Sbjct: 166 DMAKLNECPLDPGGYFIVNGTEKV----ILVQEQLSKNRIIVEADEKKNIVQASVTSSTH 221
Query: 152 VRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDE 211
RK ++ V K N + L +E +P+ +VLKA +DLEI L C D
Sbjct: 222 ERKSKTYVVTK-----NDKIYLKHNSIAEE--VPIVVVLKACGVVSDLEIM-QLVCGNDS 273
Query: 212 KYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPV----IDGLQSESY 267
Y+ + + L E +L + T+ Q L+ IG + V + LQ E
Sbjct: 274 SYQ------------DIFAVNLEEAAELKIYTQQQALEFIGTKVKTVRRQKLSILQ-EGI 320
Query: 268 YAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHL 327
A+A TVI ++ V D +K + M +++ +D+ + D+ D + N+ + L G L
Sbjct: 321 EAIATTVIA-HLTVEALDFREKALYIAMMTRRVVMAIDNPKMVDDRDYVGNKRLELAGQL 379
Query: 328 ITIYLKEKLEDWLRKGKKLIQDEIE--NNGKKFDFFNLANIKKVMEKNPSKQIGTSIETM 385
+++ ++ + + K I ++ N + +D N+ S I T +
Sbjct: 380 MSLLFEDLFKKFNNDFKANIDKVLKKPNRAEMYDALLTINVH-------SNNITTGMNRA 432
Query: 386 LKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLLPE 444
+ TG + + +RAG T RL+++ + + + F R S R L P
Sbjct: 433 ISTGNWSLKRFK--MERAGVTHVLSRLSYISALGMMTRI--SSQFEKSRKVSGPRALQPS 488
Query: 445 SWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPS 504
+G LC TP+GE CGL+ ++ + + D I+ R L + + +I S
Sbjct: 489 QFGMLCTSDTPEGEACGLVKNLALMTHITTD-DEEEPIK-----RICYLLGVEDISLIDS 542
Query: 505 LPKLVKSGPPAVLSVLLDGRVVGV--IPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVP 562
+ G V L+G ++G P+ K V+ R L+ + + ++
Sbjct: 543 ASIHLNYG------VYLNGTIIGTTRFPT----KFVSQFRCLRRTGRAS-------EFIS 585
Query: 563 LSLGGAYPGLYLFTSPPKFVRPVRNIS-----LPSEESQNIELIGPFE-QVFMEIRCPDG 616
+ +++ T + RP+ +S + ++ +++ L G + F+++ +
Sbjct: 586 IYTNTHQKAVHIATDGGRICRPLIIVSNGQSSVTADHLRSL-LAGKLQFDDFLKLGLVEY 644
Query: 617 GDGGRRN-AFPA----------THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQ 665
D N +F A TH EI +L VA L PY HNQSPRN YQC M KQ
Sbjct: 645 LDVNEENDSFIALYEKDLSENITHLEIESFTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQ 704
Query: 666 TMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDME 725
+G R D LY + PQ P+V+T T D+ P G NA VAV++Y+GYD+E
Sbjct: 705 AIGAIAYNQFKRIDTLLYLMIYPQQPMVKTKTIELIDYDKLPAGQNATVAVMSYSGYDIE 764
Query: 726 DAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSL--HSVIDSDG 783
DA++LNK+S+DRG + + T L N R +++ + + H + DG
Sbjct: 765 DALVLNKASIDRGFGRCETRRKNTTVLKRYPNHTQDIIGGMRVDENGEPIWQHQALGPDG 824
Query: 784 LPYVGQMIHPGEPYC--SIYDKTTNSWRTNSRKGSESVFVDYVA--------VDMKNSKN 833
L VG + G+ Y S+ ++S T ++ + V Y A V M S N
Sbjct: 825 LGEVGMKVESGQIYVNKSVPTNASDSILTQTQAQYKETPVVYRAPEPSHIDQVMMSVSDN 884
Query: 834 LPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFP 893
+ R R P +GDKFSSRHGQKGVC + D+PF+ G+ PD+I+NPH FP
Sbjct: 885 DQALIKVLLRQNRRPELGDKFSSRHGQKGVCGIIVKQEDLPFND-QGVVPDIIMNPHGFP 943
Query: 894 SRMTIAMLLESVAAK 908
SRMT+ ++E ++ K
Sbjct: 944 SRMTVGKMIELISGK 958
>gi|430811324|emb|CCJ31247.1| unnamed protein product [Pneumocystis jirovecii]
Length = 1167
Score = 276 bits (705), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 236/919 (25%), Positives = 410/919 (44%), Gaps = 108/919 (11%)
Query: 37 HCRQAKISYTGKLMADVEFQYLDAGSPVVRER-FNFGQFPVMLKTRRCHLQGADSQKLVS 95
CR ++Y+ +M D+E+ G VVR + G+ P+ML++ +C L +++
Sbjct: 128 ECRLRDLTYSAPIMVDIEYT---RGKQVVRRKGVQIGRLPIMLRSNKCILFNKTETQIIR 184
Query: 96 LKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKD 155
+ E + GGYFI+ G E+V +++ +Q ++ + + ++G +A VI +
Sbjct: 185 MNECPLDPGGYFIVKGTEKV---ILVQEQLSKNRIIVEA--EPKKGLV-QASVISSTHER 238
Query: 156 QSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKK 215
+S Y+L + ++ +P+ ++ KA+ +D EI +
Sbjct: 239 KSKT-----YVLTKNAKIYLKHNSIAEDVPIVLIFKAMGFQSDQEILELI---------- 283
Query: 216 EKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQ-------SESYY 268
A P + I + E L + T+ Q L+++G + + SE
Sbjct: 284 ---AGSDPNYQDMFAINIEECAKLKIYTQQQALEYLGARVKISRKNSELSQRRPPSEEAL 340
Query: 269 AVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLI 328
V ++ +I V + K M +++ + + + D+ D + N+ + L G L+
Sbjct: 341 EVLAAIVLAHIPVENLNFRPKIIYFAIMTRRVLMAIKNPKMVDDRDYVGNKRLELAGQLL 400
Query: 329 TIYLKEKLEDWLRKGKKLIQDEIE--NNGKKFDFFNLANIKKVMEKNPSKQIGTSIETML 386
++ ++ + + R K I ++ N ++FD +N +I I + + +
Sbjct: 401 SLLFEDLFKTFNRNLKLNIDKVLKKPNRTQEFDAYNQISIH-------GDHITSGMIRAI 453
Query: 387 KTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLLPES 445
TG + + +RAG T RL+++ + + + F R S R L P
Sbjct: 454 STGNWSLKRFK--MERAGVTHVLSRLSYISALGMMTRI--SSQFEKTRKISGPRALQPSQ 509
Query: 446 WGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSL 505
+G LCP TP+GE CGL+ ++ + + D I ++ +G
Sbjct: 510 FGMLCPSDTPEGESCGLIKNLALMTHITTDNDEE-----------PIEKLAFVLGTEEKD 558
Query: 506 PKLVKSG---PPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVP 562
L+ P + L+G ++G+ I V++ R+L+ I + ++
Sbjct: 559 ISLITGHELYAPGTYVIYLNGIILGITRFPTI--FVSNFRKLRRKGQ--ISE-----FIS 609
Query: 563 LSLGGAYPGLYLFTSPPKFVRPVRNISLPSEE--SQNIELIGPFEQVF---MEIRCPDGG 617
+ + Y +++ + + RP+ + + SQ++E + + F ++ +
Sbjct: 610 IHINHHYSSVHIASDGGRICRPLIIVENGKSKVTSQHLEALKAGKMTFDDFLKRGLVEYL 669
Query: 618 DGGRRN-----------AFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQT 666
D N + TH EI P +L VA L PY HNQSPRN YQC M KQ
Sbjct: 670 DVNEENDSYISIYENKISESTTHLEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQA 729
Query: 667 MGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMED 726
+G R D LY + PQ P+V+T T G D+ P G NAI+AV++++GYD+ED
Sbjct: 730 IGAIAWNQLLRIDSLLYLMIYPQQPLVKTKTIDLIGYDKLPAGQNAIIAVMSFSGYDIED 789
Query: 727 AMILNKSSVDRGMCHGQIYQTETIDLSDDGN-KVDRGQKLFRRNKDAKSLHSVIDSDGLP 785
A+ILNK+S+DRG Q+ + + N DR + R D + ++ DGL
Sbjct: 790 ALILNKASIDRGFGRCQVIRKYATTIKRYANGSYDRLEGPSRNEGDVAWKYEALEEDGLA 849
Query: 786 YVGQMIHPGEPY------CSIYDKTTN--------SWRTNSR--KGSESVFVDYVAVDMK 829
VG+ I G+ Y + D T SW+ + K E ++D + +
Sbjct: 850 GVGEKIESGQIYINKQIPTNANDNTIATRIQQHELSWKASPMIYKSFEPGYIDKIMLTTT 909
Query: 830 NSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINP 889
+S K + R TR P +GDKFSSRHGQKGVC + DMPF G+ PD+I+NP
Sbjct: 910 DSDQTLIKCLV--RQTRRPELGDKFSSRHGQKGVCGLIVQQEDMPFDQ-NGITPDIIMNP 966
Query: 890 HAFPSRMTIAMLLESVAAK 908
H FPSRMT+ ++E +A K
Sbjct: 967 HGFPSRMTVGKMIELLAGK 985
>gi|384497113|gb|EIE87604.1| DNA-directed RNA polymerase III subunit RPC2 [Rhizopus delemar RA
99-880]
Length = 1146
Score = 276 bits (705), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 256/935 (27%), Positives = 420/935 (44%), Gaps = 146/935 (15%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR ++Y+ + DVE Y V R+ G+ P+ML++ C L G + +L +K
Sbjct: 112 CRLRDLTYSANIFVDVE--YTRGRQIVKRKNVMIGRLPIMLRSSHCVLSGKNEAELARMK 169
Query: 98 EEAAEMGGYFILNGLERVF---------RSVI-LPKQNYPMSMVRSSFRDRREGYTDKAV 147
E + GGYF++ G E+V R ++ + K+N ++ V+SS +R
Sbjct: 170 ECPLDPGGYFVVKGTEKVILVQEQLSKNRIIVDVDKKNNIVANVQSSTHER--------- 220
Query: 148 VIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTC 207
K ++++ +K NG + L ++ +PV I LKAL +D EI L C
Sbjct: 221 ------KSKTAIFVK-----NGKIYLKHNSISED--IPVAIFLKALGVQSDREI-AQLVC 266
Query: 208 CYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQ------PVIDG 261
D + + I + E L + T++Q L +IG + P +
Sbjct: 267 GDDHD------------LHDTFSINIEESSRLRVFTQMQALDYIGAKVKVNRKMGPTVRK 314
Query: 262 LQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEI 321
+E V TVI ++ V + +K M++++ + + D+ D + N+ +
Sbjct: 315 TMAEEALEVLATVILAHVPVENLNFREKSIYAAVMIRRVLAAMSDEVQVDDRDYVGNKRL 374
Query: 322 LLPGHLITIYLKEKLEDWLRKGKKLIQDEI---ENNGKKFDFFNLANIKKVMEKNPSKQI 378
L G L+++ L E L K+ D++ N ++FD FN + V+ + I
Sbjct: 375 ELAGQLLSL-LFEDLFKKFNSDLKMNADKVLKKPNRTQEFDIFN----QLVLHGD---HI 426
Query: 379 GTSIETMLKTGRLATQT-GLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS 437
+ + TG + +D RAG T RL+++ + + + F R S
Sbjct: 427 TSGFIRAISTGNWVLKRFKMD---RAGITQVLSRLSYISALGMMTRI--SSQFEKTRKVS 481
Query: 438 -VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
R L P WG LCP TP+GE CGL+ ++ + + + I ++
Sbjct: 482 GPRALQPSQWGMLCPSDTPEGEACGLVKNLALMTHITT-----------DQEEDPIRKIA 530
Query: 497 IGVGMIP-SLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDD 555
+G+ +L + P VLL+G ++G+ + ++ V RRL+ A I +
Sbjct: 531 FALGVEDVNLLTGAEIYRPNTFIVLLNGVILGI--TRRVQHFVRSFRRLR--RAGRISE- 585
Query: 556 LEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNI--SLPSEESQNIELIGPFEQVFME--- 610
+V + + + L + + RP+ + +P+ + +I + + VF +
Sbjct: 586 ----FVSVFVNIHQKTVNLSSDGGRICRPLIIVENGVPAVKQHHINDLIAGKLVFDDFLK 641
Query: 611 ------IRCPDGGDGG----RRNAFP-ATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQ 659
+ + D ++ P TH EI P +L VA L PY HNQSPRN YQ
Sbjct: 642 RGLVEYVDVNEESDANIAVYEKDIIPQTTHLEIEPFTILGAVAGLIPYPHHNQSPRNTYQ 701
Query: 660 CQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAY 719
C M KQ +G R + +Y + PQ P+V++ T G D+ P G NA VAV++Y
Sbjct: 702 CAMGKQAIGAIGYNQLNRIETLIYLMVYPQQPMVKSKTIELIGYDKLPAGQNATVAVMSY 761
Query: 720 TGYDMEDAMILNKSSVDRGMCHGQI----------YQTETID-LSDDGNKVDRGQKLFRR 768
+GYD+EDA++LNKS +DRG Q+ Y T D L+D + R +L+
Sbjct: 762 SGYDIEDALVLNKSGLDRGFGRCQVMRKYATMVKRYPNGTHDRLADPPS---RESELWNE 818
Query: 769 NKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESV--------- 819
+ DA I++DG+ VG+ + G Y + + +++V
Sbjct: 819 SYDA------IEADGIAGVGEPVEAGSIYINKQTPVSTGVDAGVPGAAQTVAYKPAPMRY 872
Query: 820 ------FVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDM 873
++D V S K NI R TR P +GDKFSSRHGQKGVC + DM
Sbjct: 873 KSPQTGYIDKVLFTTTESDQTLIKVNI--RQTRRPELGDKFSSRHGQKGVCGIIVQQEDM 930
Query: 874 PFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
PFS + G+ PD+I+NPH FPSRMT+ ++E +A K
Sbjct: 931 PFSDL-GVCPDIIMNPHGFPSRMTVGKMIELLAGK 964
>gi|340376544|ref|XP_003386792.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Amphimedon
queenslandica]
Length = 1131
Score = 275 bits (704), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 258/927 (27%), Positives = 409/927 (44%), Gaps = 132/927 (14%)
Query: 37 HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
CR ++Y+ + D+E Y V R+ F+ GQ P+ML++ C L + ++L L
Sbjct: 100 ECRLRDMTYSAPVTVDIE--YTRGTQRVRRKGFSIGQLPIMLRSANCVLSNKNQEELAKL 157
Query: 97 KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRC-VRKD 155
KE + GGYF++ G E+V IL ++ + + + DK I C V
Sbjct: 158 KECPIDPGGYFVVRGTEKV----ILIQEQLSKNRIIVDY--------DKKGNIGCSVTSS 205
Query: 156 QSSVTLKLYYLLNGSVRLGFWLQGKEYL--LPVGIVLKALVDTNDLEIFNHLTCCYDEKY 213
K + G+ F+L+ + +PV +V KA+ +D EI + C
Sbjct: 206 THDRKSKTNLIFKGN---QFYLKHNSFTDDIPVVLVFKAMNIISDQEIVQMIGC------ 256
Query: 214 KKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAET 273
+ +V +P L E L++ T+ + L+ +G + + G + S A
Sbjct: 257 EDSVLSVFAPS--------LEECAMLNVYTQKKALEVVGAKTRKRMYG-KPRSKAEEAHD 307
Query: 274 VIRDYIFVHL----NDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
V+ Y+ H+ ND K + L M++++ V D+ D N+ + L G L++
Sbjct: 308 VLSHYVLAHIPVESNDFKIKASFLSLMIRRVILATAKDEV-DDRDYYGNKRLELAGPLLS 366
Query: 330 IYLKEKLEDWLRKGKKLIQDEI-ENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKT 388
+ ++ + + + KK+I + + + FD + ++K + I IET L T
Sbjct: 367 LLFEDLFKRYNSELKKIIDRTLAKKRTQPFDV--VCHMKNSI-------ITQGIETALST 417
Query: 389 GRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLLPESWG 447
G + +R G T R++F+ + + + F R S R L P WG
Sbjct: 418 GNWTLRRFK--MERGGVTQVLSRMSFIACLGHMTRIT--SQFEKTRKISGPRSLQPSQWG 473
Query: 448 FLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPK 507
+CP TP+GE CGL+ ++ + + D G IR L +GV I L
Sbjct: 474 MVCPSDTPEGEACGLVKNLALISHITTDVD-EGPIRR--------LAFNLGVEDIRYLSG 524
Query: 508 LVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGG 567
S + L VLL+G +VGV+ V + R L+ + +V +S
Sbjct: 525 EELSSNESYL-VLLNGNIVGVV--RYYASFVRYFRLLRRNGRMN-------EFVSISTNH 574
Query: 568 AYPGLYLFTSPPKFVRPVRNI--SLPSEESQNIELIGP---FEQVFMEIRCPDGGDGGRR 622
+ + + + RP + +P S +I+LI FE F+ + D
Sbjct: 575 HNRTVSISSDSGRVCRPYIIVINGVPRVTSHHIDLISKGMEFED-FLAKGLIEYLDVNEE 633
Query: 623 N-----------AFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSV 671
N TH EI P +L V A L PY HNQSPRN YQC M KQ +G
Sbjct: 634 NDSMIALYESDINSSTTHLEIEPFTILGVCAGLIPYPHHNQSPRNTYQCAMGKQAIGTIA 693
Query: 672 QALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILN 731
+ R D L + PQ PIV+T T D+ P G NA+VA++ Y+GYD+EDA+ILN
Sbjct: 694 YNQQNRIDTLLNIMIYPQAPIVKTRTIDLIKFDKLPAGFNAVVAIMCYSGYDIEDALILN 753
Query: 732 KSSVDRGMCHGQIYQTETIDLSDDGN-----------KVDRGQKLFRRNKDAKSLHSVID 780
++S+DRG+ + + +T L N ++D G+ +++ H+ +D
Sbjct: 754 RASLDRGLARSLVCRKQTCSLKRYSNMTFDKILGPSREMDTGKPIWK--------HTPLD 805
Query: 781 SDGLPYVGQMIHPGE------------PYCSIYDKTTNSWRTN-------SRKGSESVFV 821
DG+ V + + G+ C N S +G V+
Sbjct: 806 EDGIVGVAERVSSGQVLINKLVPQVTQSLCPGGGGAAAGGADNNYKSCPVSYRGPTDVYA 865
Query: 822 DYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGM 881
+ V + N ++ K I R P IGDKFSSRHGQKGVC + P DMPF+ G+
Sbjct: 866 NNVLITNNNEESYLIK--ILLESIRIPEIGDKFSSRHGQKGVCGLIVPQEDMPFTD-QGL 922
Query: 882 RPDLIINPHAFPSRMTIAMLLESVAAK 908
PD+I+NPH FPSRMT+ L+E +A K
Sbjct: 923 CPDIIMNPHGFPSRMTVGKLIEVIAGK 949
>gi|363756358|ref|XP_003648395.1| hypothetical protein Ecym_8300 [Eremothecium cymbalariae
DBVPG#7215]
gi|356891595|gb|AET41578.1| Hypothetical protein Ecym_8300 [Eremothecium cymbalariae
DBVPG#7215]
Length = 1141
Score = 275 bits (704), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 260/976 (26%), Positives = 425/976 (43%), Gaps = 141/976 (14%)
Query: 9 FEPLRELVRHHIESFDYMLDEGLSEMFD-------------------------------- 36
F ++ LV+ H++SF+Y +D L ++
Sbjct: 47 FLKVKGLVKQHLDSFNYFVDVDLKKIIKANEMVLSDVDPEFYLKYVDIRVGQRSNSSRID 106
Query: 37 -----HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQ 91
CR ++Y+ + D+E Y V+ + G+ P+ML++ +C L GA +
Sbjct: 107 MLPPHECRLRDMTYSAPIYVDIE--YTRGRLIVLHKDVEIGKMPIMLRSNKCILNGASEE 164
Query: 92 KLVSLKEEAAEMGGYFILNGLERVF-------RSVILPKQNYPMSMVRSSFRDRREGYTD 144
+ L E + GGYFI+NG E+V ++ I+ + + S+V++S
Sbjct: 165 TMAKLNECPLDPGGYFIVNGTEKVILVQEQLSKNRIIVEADEKKSIVQASVTSSTHERKS 224
Query: 145 KAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNH 204
K V+ K YL + S+ +E +P+ IVLKA +DLEI
Sbjct: 225 KTYVVTKNEK---------IYLKHNSI-------SEE--VPIVIVLKACGVVSDLEIM-Q 265
Query: 205 LTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPV----ID 260
L C + Y+ + I E +++ T+ Q L++IG + + +
Sbjct: 266 LVCGNNSSYQ------------DIFAINFEEASKMNIYTQQQALEYIGTKVKTIRRQKLT 313
Query: 261 GLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQE 320
LQ E A+A TVI ++ V D +K + M +++ + + + D+ D + N+
Sbjct: 314 ILQ-EGIEAIATTVIA-HLTVEALDFREKALYIAIMTRRVVMAIQNCKMVDDRDYVGNKR 371
Query: 321 ILLPGHLITIYLKEKLEDWLRKGKKLIQDEIE--NNGKKFDFFNLANIKKVMEKNPSKQI 378
+ L G L+++ ++ + + K I ++ N + +D N+ S I
Sbjct: 372 LELAGQLMSLLFEDLFKKFNNDFKASIDKVLKKPNRAEMYDALLSINVH-------SNNI 424
Query: 379 GTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS- 437
+ + + TG + + +RAG T RL+++ + + + F R S
Sbjct: 425 TSGLNRAISTGNWSLKRFK--MERAGVTHVLSRLSYISALGMMTRI--SSQFEKSRKVSG 480
Query: 438 VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLI 497
R L P +G LC TP+GE CGL+ ++ + + D I+ R L +
Sbjct: 481 PRALQPSQFGMLCTSDTPEGEACGLVKNLALMTHITTD-DEEEPIK-----RLCYLLGVE 534
Query: 498 GVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVI--PSSEIEKVVAHLRRLKVSAASVIPDD 555
+G+I S G V L+G ++G P+ + + R K+S I +
Sbjct: 535 DIGLIDSASLHDNYG------VYLNGTIIGTARYPTKFVHQFRILRRTGKISEFISIYTN 588
Query: 556 LEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPD 615
+ V + G P V+ +++ S + ++ F+ F+++ +
Sbjct: 589 IHQNAVHIVTDGGR-----ICRPLIIVKNGKSMVASSHLKRLLDGKLQFDD-FLKLGLVE 642
Query: 616 GGDGGRRN-AFPA----------THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAK 664
D N +F A TH EI P +L VA L PY HNQSPRN YQC M K
Sbjct: 643 YLDVNEENDSFIALYEKDIHEGITHLEIEPFTVLGAVAGLIPYPHHNQSPRNTYQCAMGK 702
Query: 665 QTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDM 724
Q +G R D LY + PQ P+V+T T D+ P G NA VAV++Y+GYD+
Sbjct: 703 QAIGAIAYNQFKRIDTLLYLMIYPQQPMVKTKTIELIDYDKLPAGQNATVAVMSYSGYDI 762
Query: 725 EDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSL--HSVIDSD 782
EDA++LNKSS+DRG + + T L N R +++ + + H + D
Sbjct: 763 EDALVLNKSSIDRGFGRCETRKKTTTILKRYPNHTQDIIGGMRVDENGEPIWQHKSLGPD 822
Query: 783 GLPYVGQMIHPGEPYC--SIYDKTTNSWRTNSRKGSESVFVDYVA--------VDMKNSK 832
GL VG + G+ Y S+ ++S T S+ + Y A V M S
Sbjct: 823 GLGEVGMKVESGQIYINKSVPTNASDSVLTQSQSQYREAPIIYRAPEPSHIDQVMMSVSD 882
Query: 833 NLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAF 892
N + R R P +GDKFSSRHGQKGVC + DMPF+ G+ PD+I+NPH F
Sbjct: 883 NDQALIKVLLRQNRRPELGDKFSSRHGQKGVCGIIVQQEDMPFND-QGICPDIIMNPHGF 941
Query: 893 PSRMTIAMLLESVAAK 908
PSRMT+ ++E V+ K
Sbjct: 942 PSRMTVGKMIELVSGK 957
>gi|19114602|ref|NP_593690.1| DNA-directed RNA polymerase III complex subunit Rpc2
[Schizosaccharomyces pombe 972h-]
gi|1710663|sp|Q10233.1|RPC2_SCHPO RecName: Full=DNA-directed RNA polymerase III subunit RPC2;
Short=RNA polymerase III subunit 2; Short=RNA polymerase
III subunit C2; AltName: Full=C128; AltName:
Full=DNA-directed RNA polymerase III 130 kDa
polypeptide; AltName: Full=RPC130
gi|1204209|emb|CAA93558.1| DNA-directed RNA polymerase III complex subunit Rpc2
[Schizosaccharomyces pombe]
gi|76782167|gb|ABA54854.1| RNA polymerase III large subunit Rpc2 [Schizosaccharomyces pombe]
Length = 1165
Score = 275 bits (704), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 259/922 (28%), Positives = 412/922 (44%), Gaps = 117/922 (12%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRER-FNFGQFPVMLKTRRCHLQGADSQKLVSL 96
CR ++Y + D+E+ G VVR R G+ PVML++ +C L G + ++ +L
Sbjct: 126 CRLRDLTYGANIYVDIEYT---RGKQVVRRRNVPIGRMPVMLRSNKCVLSGKNEMEMAAL 182
Query: 97 KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQ 156
E + GGYFI+ G E+V IL ++ + + ++ + RK +
Sbjct: 183 NECPLDPGGYFIVKGTEKV----ILVQEQLSKNRIIVEAEPKKGLWQASVTSSTHERKSK 238
Query: 157 SSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKE 216
+ V K NG + L + +P+ +VLKA+ +D EIF L + Y+
Sbjct: 239 TYVITK-----NGKLYLKHNSVADD--IPIVVVLKAMGLQSDQEIF-ELVAGAEASYQD- 289
Query: 217 KGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQ-PVIDGLQSESYYAVAETVI 275
+ +P + E K L++ T Q L++IG + G + A V+
Sbjct: 290 ---LFAPSIEECAK--------LNIYTAQQALEYIGARVKVNRRAGANRLPPHEEALEVL 338
Query: 276 RDYIFVHLNDNNDKFN-----LLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITI 330
+ H+N N +F + I + L ++VD V D D + N+ + L G L+ +
Sbjct: 339 AAVVLAHINVFNLEFRPKAVYIGIMARRVLMAMVDPLQVDDR-DYVGNKRLELAGQLLAL 397
Query: 331 YLKEKLEDWLRKGKKLIQDEIENNGKK------FDFFNLANIKKVMEKNPSKQIGTSIET 384
ED +K ++ I+ KK FD +N + S I +
Sbjct: 398 LF----EDLFKKFNSDLKLNIDKVLKKPHRTQEFDAYNQLTVH-------SDHITQGMVR 446
Query: 385 MLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLLP 443
L TG + + +RAG T RL+++ + + + F R S R L
Sbjct: 447 ALSTGNWSLKRFK--MERAGVTHVLSRLSYISALGMMTRIT--SQFEKTRKVSGPRSLQA 502
Query: 444 ESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIP 503
+G LC TP+GE CGL+ ++ + + + I+ + V+ G
Sbjct: 503 SQFGMLCTSDTPEGEACGLVKNLALMTHITTDEEEEPIIKLAYAFGIEDIHVISG----- 557
Query: 504 SLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPL 563
+L G V L+G ++G+ S VA R+L+ S + P ++ +
Sbjct: 558 --RELHSHG---TYLVYLNGAILGI--SRYPSLFVASFRKLRRSG-KISP------FIGI 603
Query: 564 SLGGAYPGLYLFTSPPKFVRP---VRNISLPSEESQNIELIGP----FEQVFME-----I 611
+ +++ T + RP V+N LP ES++I L+ FE + +
Sbjct: 604 FINTHQRAVFISTDGGRICRPLIIVQN-GLPKVESKHIRLLKEGKWGFEDFLKQGLVEYV 662
Query: 612 RCPDGGDG----GRRNAFP-ATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQT 666
+ D R+ P TH EI P +L VA L PY HNQSPRN YQC M KQ
Sbjct: 663 DVNEENDSLISVYERDITPDTTHLEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQA 722
Query: 667 MGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMED 726
+G R D LY + PQ P+V+T T G D+ P G NA VA+++Y+GYD+ED
Sbjct: 723 IGAIAYNQLQRIDTLLYLMVYPQQPMVKTKTIELIGYDKLPAGQNATVAIMSYSGYDIED 782
Query: 727 AMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSL---HSVIDSDG 783
A++LNKSS+DRG Q++ ++ + N +R+ + + H V++ DG
Sbjct: 783 ALVLNKSSIDRGFGRCQVFHKHSVIVRKYPNGTHDRIGDPQRDPETGEVVWKHGVVEDDG 842
Query: 784 LPYVGQMIHPGEPYC-----------SIYDKTTNSWRTNSR------KGSESVFVDYVAV 826
L VG + PG+ Y SI T + + + K E ++D V +
Sbjct: 843 LAGVGCRVQPGQIYVNKQTPTNALDNSITLGHTQTVESGYKATPMTYKAPEPGYIDKVML 902
Query: 827 DMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLI 886
+S K + R TR P +GDKFSSRHGQKGVC + DMPF+ G+ PD+I
Sbjct: 903 TTTDSDQTLIK--VLMRQTRRPELGDKFSSRHGQKGVCGVIVQQEDMPFND-QGICPDII 959
Query: 887 INPHAFPSRMTIAMLLESVAAK 908
+NPH FPSRMT+ ++E ++ K
Sbjct: 960 MNPHGFPSRMTVGKMIELLSGK 981
>gi|366989721|ref|XP_003674628.1| hypothetical protein NCAS_0B01700 [Naumovozyma castellii CBS 4309]
gi|342300492|emb|CCC68254.1| hypothetical protein NCAS_0B01700 [Naumovozyma castellii CBS 4309]
Length = 1150
Score = 275 bits (704), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 257/982 (26%), Positives = 433/982 (44%), Gaps = 151/982 (15%)
Query: 9 FEPLRELVRHHIESFDYMLDEGLSEMFD-------------------------------- 36
F ++ LV+ H++SF+Y +D L ++
Sbjct: 53 FLKVKGLVKQHLDSFNYFVDVDLKKIIKANQVILSDVDPEFYLKYVDIRVGKRSTSSAKD 112
Query: 37 ------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADS 90
CR ++Y+ + D+E Y + ++ + G+ P+ML++ +C L G D
Sbjct: 113 YLTPPHECRLRDMTYSAPIYVDIE--YTRGRNIIMHKDVELGRMPIMLRSNKCTLYGIDE 170
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
+++ L E + GGYFI+NG E+V +++ +Q ++ + D ++G +V
Sbjct: 171 KEMAKLNECPLDPGGYFIVNGTEKV---ILVQEQLSKNRIIVEA--DEKKGIVQASVTSS 225
Query: 151 C-VRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY 209
R+ ++ V K N + L +E +P+ IVLKA +DLEI L C
Sbjct: 226 THERRSKTYVITK-----NDKIYLKHNSITEE--IPIVIVLKACGVVSDLEIM-QLVCGN 277
Query: 210 DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPV----IDGLQSE 265
D Y+ + + L E L++ T+ Q L+ IG + + + LQ E
Sbjct: 278 DSSYQ------------DIFAVNLEEASRLNIYTQQQALEFIGTKVKTMRRQKLSVLQ-E 324
Query: 266 SYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPG 325
A+A TV+ ++ V D +K + M +++ + + + D+ D + N+ + L G
Sbjct: 325 GIEAIATTVVA-HLTVEALDFREKALYMAMMTRRVVMAIQNPKMVDDRDYVGNKRLELAG 383
Query: 326 HLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETM 385
LI++ ++ + + K I ++ + ++ L +I S I + +
Sbjct: 384 QLISLLFEDLFKKFNSDFKATIDKVLKKPNRAMEYDALLSINV-----HSNNITSGLNRA 438
Query: 386 LKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLLPE 444
+ TG + + +RAG T RL+++ + + + F R S R L P
Sbjct: 439 ISTGNWSLKRF--KMERAGVTHVLSRLSYISALGMMTRI--SSQFEKSRKVSGPRALQPS 494
Query: 445 SWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPS 504
+G LC TP+GE CGL+ ++ + + D + L ++GV +
Sbjct: 495 QFGMLCTADTPEGEACGLVKNLALMTHITT---------DDEEEPIKRLCYILGVEDV-- 543
Query: 505 LPKLVKSGPPAV-LSVLLDGRVVGV--IPSSEIEKVVAHLRRL-KVSAASVIPDDLEVGY 560
L+ S + V L+G ++G P + + HLRR K+S +
Sbjct: 544 --SLIDSASLHLNFGVYLNGTLIGTTRFPIKFVSQ-FRHLRRTGKISE-----------F 589
Query: 561 VPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQ--------NIELIGPFEQVFMEIR 612
+ + +++ T + RP+ ++ N EL+ F+ F+++
Sbjct: 590 ISIYANSHQKAVHIATDGGRICRPLIIVTKGKSHVTADHLRRLLNGELV--FDD-FLKLG 646
Query: 613 CPDGGDGGRRN-AFPATHE----------EIHPTGMLSVVANLTPYSDHNQSPRNMYQCQ 661
+ D N +F A +E EI P +L VA L PY HNQSPRN YQC
Sbjct: 647 LVEYLDVNEENDSFIALYEKDIESASTHLEIEPFTILGAVAGLIPYPHHNQSPRNTYQCA 706
Query: 662 MAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTG 721
M KQ +G R D LY + PQ P+V+T T D+ P G NA VAV++Y+G
Sbjct: 707 MGKQAIGAIAYNQFKRIDTLLYLMIYPQQPMVKTKTIELIDYDKLPAGQNATVAVMSYSG 766
Query: 722 YDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSL--HSVI 779
YD+EDA++LNK+S+DRG + + T L N R +++ + + H +
Sbjct: 767 YDIEDALVLNKASIDRGFGRCETRRKTTTVLKRYPNHTQDIIGGMRVDENGEPIWQHKAL 826
Query: 780 DSDGLPYVGQMIHPGEPYCS-------IYDKTTNSWRTNSR------KGSESVFVDYVAV 826
+DGL VG + G+ Y + D TT + + R + E +D V
Sbjct: 827 GADGLGEVGMKVESGQIYINKSVPTNQSNDMTTQAQQAQYRETPVIYRAPEPSHIDQVM- 885
Query: 827 DMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLI 886
M S N + R R P +GDKFSSRHGQKGVC + DMPF+ G+ PD+I
Sbjct: 886 -MSVSDNDQALIKVLLRQNRRPELGDKFSSRHGQKGVCGIIVKQEDMPFND-QGIVPDII 943
Query: 887 INPHAFPSRMTIAMLLESVAAK 908
+NPH FPSRMT+ ++E ++ K
Sbjct: 944 MNPHGFPSRMTVGKMIELISGK 965
>gi|170097637|ref|XP_001880038.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164645441|gb|EDR09689.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 1142
Score = 275 bits (703), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 262/990 (26%), Positives = 422/990 (42%), Gaps = 159/990 (16%)
Query: 9 FEPLRELVRHHIESFDYMLDEGLS----------------------------------EM 34
F ++ LV+ HI+SF+Y +D + E
Sbjct: 41 FLKVKGLVKQHIDSFNYFVDIDIKNIVRANNKVTSDVDPRFWLKYTDINVGFPDRNELEA 100
Query: 35 FD------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGA 88
D CR I+Y ++ +++ G +V+ N G+ P+ML++ +C L G
Sbjct: 101 IDKRVTPHECRLRDITYGAPIVVTIQYT---RGKSIVQRNVNIGRLPIMLRSSKCVLTGR 157
Query: 89 DSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVV 148
+L + E + GGYF++ G E+V IL ++ S R E T K VV
Sbjct: 158 TEAQLARMTECPLDPGGYFVVKGTEKV----ILVQEQL------SKNRIIVETDTVKGVV 207
Query: 149 -IRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYL--------LPVGIVLKALVDTNDL 199
C + K Y +G+ YL +P+ I LKAL +D
Sbjct: 208 QASCTSSTHGGLKSKTYVATK---------KGRIYLRHNSIHEDVPIVIALKALGIQSDK 258
Query: 200 EIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQ--P 257
EI LT E YK A L + L + TR Q L++IG +
Sbjct: 259 EIL-LLTAGTTEAYKNTFSAN------------LEDAAKLGVYTRQQALEYIGSRVKINR 305
Query: 258 VIDGLQSESYYAVAE---TVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPD 314
+ G + ++ E T++ ++ V+ D K + M +++ + ++ D+ D
Sbjct: 306 RVMGPRRPAWEEALEALATIVLAHVPVNGLDFRSKAIFVATMTRRVLMAMQDENMVDDRD 365
Query: 315 SLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGK--KFDFFNLANIKKVMEK 372
+ N+ + L G L+ + ++ + + K I ++ + +FD +N ++
Sbjct: 366 YVGNKRLELAGQLLALLFEDLFKTYNSNLKIAIDKVLKKPSRTSEFDAYNTMQMQ----- 420
Query: 373 NPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAG 432
+ + + TG + + +RAG T RL+F+ + + + F
Sbjct: 421 --GDHLTSGFVRAISTGNWSLKRFK--MERAGVTHVLSRLSFISALGMMTRI--SSQFEK 474
Query: 433 LRTTS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTS 491
R S R L P WG LCP TP+GE CGL+ ++ + + D + +
Sbjct: 475 TRKVSGPRALQPSQWGVLCPSDTPEGEACGLVKNLALMTHITT---------DVEEEPIT 525
Query: 492 ILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASV 551
L ++G+ I +L + P V V ++G ++GV + + VA R L+ A
Sbjct: 526 RLAFMLGIEDI-NLTTGTEIYGPGVFVVNVNGTIIGV--TRYPARFVAQFRSLR--RARR 580
Query: 552 IPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNIS-----LPSEESQNIELIGPFEQ 606
+ +V + + + +++ + + RP + + SE +++
Sbjct: 581 FSE-----FVSVYINHHHHAVHIASDGGRICRPAIIVENGRPKVASEHMMHLKKGNVTFD 635
Query: 607 VFMEIRCPDGGDGGRRN----------AFPAT-HEEIHPTGMLSVVANLTPYSDHNQSPR 655
F+ + D N PAT H EI P +L VA L PY HNQSPR
Sbjct: 636 DFLRKGLVEYLDVNEENDTYIALYESDIVPATTHLEIEPFTILGAVAGLIPYPHHNQSPR 695
Query: 656 NMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVA 715
N YQC M KQ +G R D LY PQ P+V+T T G D P G NA VA
Sbjct: 696 NTYQCAMGKQAIGAIGYNQMNRIDTLLYLSVYPQQPMVKTKTIELIGYDRLPAGQNATVA 755
Query: 716 VLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKV-DR-GQKLFRRNKDAK 773
V++Y+GYD+EDA+ILNK+S+DRG Q+ + + N DR N
Sbjct: 756 VMSYSGYDIEDALILNKASLDRGYGRCQVLRKNATLIRKYPNGTFDRLADAPLDENGQLN 815
Query: 774 SLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVF------------- 820
+ +I SDGL VG+ + PG+ Y + T + T + + + +
Sbjct: 816 KKYDIIQSDGLAGVGERVDPGDVYVNKQSPTNATDNTFTGQAASVPYKNTPLTYKSPVAG 875
Query: 821 -VDYVAV-DMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGV 878
+D V + D +N + L + + R TR P +GDKFSSRHGQKGVC + DMPF+
Sbjct: 876 NIDKVMISDTENDQTLIK---VLIRQTRRPELGDKFSSRHGQKGVCGLIVNQEDMPFND- 931
Query: 879 TGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
G+ PD I+NPH FPSRMT+ ++E +A K
Sbjct: 932 DGINPDTIMNPHGFPSRMTVGKMIELLAGK 961
>gi|392563480|gb|EIW56659.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Trametes versicolor FP-101664 SS1]
Length = 1143
Score = 275 bits (703), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 266/999 (26%), Positives = 416/999 (41%), Gaps = 176/999 (17%)
Query: 9 FEPLRELVRHHIESFDYMLDEGLSEMFD-------------------------------- 36
F ++ LV+ HI+SF+Y +D + +
Sbjct: 41 FLKVKGLVKQHIDSFNYFVDVDIKNILKANNKVTSDVDPRFWLKYTDIVVGFPDRTDADA 100
Query: 37 --------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGA 88
CR +Y ++ V QY S V R N G+ P+ML++ +C L G
Sbjct: 101 IDKSVTPHECRLRDTTYGAPIL--VTIQYTRGKSVVRRANVNIGRLPIMLRSNKCVLTGR 158
Query: 89 DSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVV 148
+L + E + GGYFI+ G E+V IL ++ + + T V
Sbjct: 159 TEAQLARMTECPLDPGGYFIVKGTEKV----ILVQEQLSKNRIIVEVDP-----TKGVVQ 209
Query: 149 IRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYL--------LPVGIVLKALVDTNDLE 200
C + K Y +GK YL +P+ I LKAL +D E
Sbjct: 210 ASCTSSTHGGLKSKTYVATK---------KGKIYLRHNSIHEDVPIVIALKALGIQSDKE 260
Query: 201 IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQP--V 258
I LT E YK +P + + K L + TR Q L+ IG +
Sbjct: 261 IL-LLTAGNHEAYKSSF----APNLEDAAK--------LGVFTRHQALEWIGSRVKVNRR 307
Query: 259 IDGLQSESYYAVAE---TVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDS 315
+ G + ++ E T++ ++ V D K + M +++ +D + D+ D
Sbjct: 308 VMGPRRPAWEEALEALATIVLAHVPVSGLDFRSKAVFVATMTRRVLMAMDDEKMVDDRDY 367
Query: 316 LQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGK--KFDFFNLANIKKVMEKN 373
+ N+ + L G L+ + ++ + + K I ++ + +FD FN +
Sbjct: 368 VGNKRLELAGQLLALLFEDLFKTFNANLKAAIDKVLKKPSRTSEFDAFNTMQFQ------ 421
Query: 374 PSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGL 433
I + + TG + + +RAG T RL+F+ + + + F
Sbjct: 422 -GDHITSGFVRAISTGNWSLKRFK--MERAGVTHVLSRLSFVSALGMMTRI--SSQFEKT 476
Query: 434 RTTS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSI 492
R S R L P WG LCP TP+GE CGL+ ++ + + D IR
Sbjct: 477 RKVSGPRALQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDVDEEPIIR--------- 527
Query: 493 LRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVI 552
+ ++GV I SL + P V ++G ++G+ + + V++ RRL+ +
Sbjct: 528 IAFMLGVEDI-SLATGTEIYGPHTFVVNVNGTIIGL--TRYPARFVSNFRRLRRAGRFS- 583
Query: 553 PDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRP--VRNISLPSEESQNIELIGPFEQVFME 610
+V + + + + + + + RP + P S++I + + F +
Sbjct: 584 ------EFVSVYINHHHRTVLIASDGGRICRPMIIVESGRPKVMSEHIAQLKQGQLTFDD 637
Query: 611 ---------IRCPDGGDGG----RRNAFPAT-HEEIHPTGMLSVVANLTPYSDHNQSPRN 656
+ + D ++ P T H EI P +L VA L PY HNQSPRN
Sbjct: 638 FLRKGLVEYLDVNEENDSYIALYEKDIVPGTTHLEIEPFTLLGAVAGLIPYPHHNQSPRN 697
Query: 657 MYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAV 716
YQC M KQ +G R D LY PQ P+V+T T G D P G NA VAV
Sbjct: 698 TYQCAMGKQAIGAIGYNQLNRIDTLLYLSVYPQQPMVKTKTIELIGYDRLPAGQNATVAV 757
Query: 717 LAYTGYDMEDAMILNKSSVDRGMCHGQI----------YQTETIDLSDDGNKVDRGQKLF 766
++Y+GYD+EDA+ILNK+S+DRG Q+ Y T D D + GQ
Sbjct: 758 MSYSGYDIEDALILNKASLDRGYGRCQVLRKNATLIRKYPNGTYDRLADAPVDETGQ--- 814
Query: 767 RRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVF------ 820
+ + +I DGL VG+ + PG+ Y I +T + NS G +
Sbjct: 815 -----VQKKYDIIQPDGLAGVGERVDPGDVY--INKQTPTNANDNSFTGQAATVPYKNAP 867
Query: 821 ----------VDYVAV-DMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWP 869
+D V + D +N + L + R TR P +GDKFSSRHGQKGVC +
Sbjct: 868 MTYKSPVAGQIDKVMITDTENDQTL---IKVLIRQTRRPELGDKFSSRHGQKGVCGLIVN 924
Query: 870 DIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
DMPF+ G+ PD I+NPH FPSRMT+ ++E +A K
Sbjct: 925 QEDMPFND-QGIVPDTIMNPHGFPSRMTVGKMIELLAGK 962
>gi|213402277|ref|XP_002171911.1| DNA-directed RNA polymerase III subunit RPC2 [Schizosaccharomyces
japonicus yFS275]
gi|211999958|gb|EEB05618.1| DNA-directed RNA polymerase III subunit RPC2 [Schizosaccharomyces
japonicus yFS275]
Length = 1160
Score = 275 bits (702), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 256/920 (27%), Positives = 409/920 (44%), Gaps = 113/920 (12%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRER-FNFGQFPVMLKTRRCHLQGADSQKLVSL 96
CR ++Y + D+E+ G VVR R G+ PVML++ +C L G ++L +L
Sbjct: 121 CRLRDLTYGANIFVDIEYT---RGRQVVRRRNVPIGRMPVMLRSNKCVLYGKSEKELAAL 177
Query: 97 KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQ 156
E + GGYF++ G E+V IL ++ + + +E + RK +
Sbjct: 178 NECPLDPGGYFVVKGTEKV----ILVQEQLSKNRIIVEAEPSKEMWQASVTSSTHERKSK 233
Query: 157 SSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKE 216
+ V K NG RL +P+ I LKA+ +D EIF L + Y+
Sbjct: 234 TYVVTK-----NG--RLYMKHNSVNEDIPIVIALKAMGLQSDREIF-ELVAGSEANYQD- 284
Query: 217 KGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQS------ESYYAV 270
+ +P V E K L++ T Q L +IG H + + E+ +
Sbjct: 285 ---LFAPSVEEAAK--------LNVYTTEQALNYIGSHVKVNRRAGAARLPPHEEALEVL 333
Query: 271 AETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITI 330
A V+ V+L+ + + + L ++VD + V D D + N+ + L G L+ +
Sbjct: 334 AAVVLAHISVVNLDFRPKAVYVAMMARRVLMAMVDPSQVDDR-DYVGNKRLELAGQLLAL 392
Query: 331 YLKEKLEDWLRKGKKLIQDEI---ENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLK 387
L E L KL D++ N ++FD +N ++ I + L
Sbjct: 393 -LFEDLFKKFNSDLKLNIDKVLKKPNRTQEFDAYNQLSMH-------GDHITQGMVRALS 444
Query: 388 TGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLLPESW 446
TG + + +RAG T RL+F+ + + + F R S R L P +
Sbjct: 445 TGNWSLKRFK--MERAGVTHVLSRLSFISALGMMTRIT--SQFEKTRKVSGPRSLQPSQF 500
Query: 447 GFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLP 506
G LC TP+GE CGL+ ++ + + + IR + + G ++
Sbjct: 501 GMLCTSDTPEGEACGLVKNLALMTHITTDEEEGPLIRLAYAFGVEDVHTVTGREILAQDS 560
Query: 507 KLVKSGPPAVLSVLLDGRVVGVI--PSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLS 564
LV ++G ++G+ PS + V+ RRL+ S + P +V +
Sbjct: 561 YLV----------YINGSILGITRYPS----RFVSCFRRLRRSG-RISP------FVGIF 599
Query: 565 LGGAYPGLYLFTSPPKFVRP--VRNISLPSEESQNIELIGPFEQVF---MEIRCPDGGDG 619
+ +++ + RP V LP +++I + E VF ++ + D
Sbjct: 600 INEHQRAVFISADGGRICRPLIVVENGLPRVTNEHIRKLKNGEMVFEDFLKAGYVEYVDV 659
Query: 620 GRRN-----------AFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMG 668
N A TH EI P +L VA + PY HNQSPRN YQC M KQ +G
Sbjct: 660 NEENDSLIAVYEKDIAPDTTHLEIEPFTILGAVAGVIPYPHHNQSPRNTYQCAMGKQAIG 719
Query: 669 FSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAM 728
R D LY + PQ P+V+T T G D+ P G NA+VA+++Y+GYD+EDA+
Sbjct: 720 AIGYNQLQRIDTLLYLMVYPQQPMVKTKTIELIGYDKLPAGQNAMVAIMSYSGYDIEDAL 779
Query: 729 ILNKSSVDRGMCHGQIYQTETIDLSDDGNKV-DRGQKLFRRNKDAKSL--HSVIDSDGLP 785
+LNK+S+DRG Q++ + + N DR R ++ K + H +++ DGL
Sbjct: 780 VLNKASLDRGFGRCQVFHKHSAIIRKYPNGTHDRIGDPQRDPENGKVIWKHKILEDDGLA 839
Query: 786 YVGQMIHPGEPYCSIY---------------DKTTNSWRTN--SRKGSESVFVDYVAVDM 828
VG + G+ Y + T + +R + K E ++D V +
Sbjct: 840 GVGCQVQSGQVYINKQTPTNALDNTIALGQPQTTESGYRATPMTYKAPEPAYIDKVM--L 897
Query: 829 KNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIIN 888
NS + R TR P +GDKFSSRHGQKGVC + DMPF+ + G+ PD+I+N
Sbjct: 898 TNSDADQTLVKVLTRQTRRPELGDKFSSRHGQKGVCGVIIQQEDMPFNDI-GICPDIIMN 956
Query: 889 PHAFPSRMTIAMLLESVAAK 908
PH FPSRMT+ ++E ++ K
Sbjct: 957 PHGFPSRMTVGKMIELLSGK 976
>gi|383862931|ref|XP_003706936.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Megachile
rotundata]
Length = 1132
Score = 274 bits (701), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 249/916 (27%), Positives = 407/916 (44%), Gaps = 113/916 (12%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR ++Y+ + D+E Y+ P++R G+ P+ML++ C L G +L +
Sbjct: 102 CRLRDLNYSAPITVDIE--YIRGHQPIIRNNLLIGRMPIMLRSSNCVLTGKSHFELAKMN 159
Query: 98 EEAAEMGGYFILNGLERV-------FRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
E + GGYF++NG E+V R+ I+ +++ +V S E T ++ +
Sbjct: 160 ECPHDPGGYFVINGQEKVILIQEQMLRNRIILEEDNKGCIVASCNSSTHERKTKTNIIGK 219
Query: 151 CVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYD 210
R YY+ + + +PV I+ KA+ +D EI + +
Sbjct: 220 GGR----------YYMRHNIFQDD---------IPVTIIFKAMGIVSDQEIMQLIGT--E 258
Query: 211 EKYKKEKGAVGSPLVSE-RVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYA 269
E++ K+ +P + E V + A+ Q L + + F + + E
Sbjct: 259 EEFMKK----FAPSLEECHVLNVFAQNQALRFLNN----KRKQKRFSVIKSSITDEMKDI 310
Query: 270 VAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
+A V+ V N K + M++K+ + D+ D N+ + L G L++
Sbjct: 311 LATNVLSHVPVVDFNFKM-KATYIALMIRKVMKAQSDGKLVDDRDYYGNKRLELAGSLLS 369
Query: 330 IYLKEKLEDWLRKGKKLIQDEIEN-NGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKT 388
+ ++ + + + K++ I +FD I K M ++ QI + + +
Sbjct: 370 LMFEDLFKRFNWELKQIADKNIPKIKAAQFD------IVKHMRQD---QITNGLAFAISS 420
Query: 389 GRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLLPESWG 447
G + +R G T RL+++ + V+ + F R S R L P WG
Sbjct: 421 GNWTIKRFK--MERHGVTQVLSRLSYISALGMMTRVN--SQFEKTRKVSGPRSLQPSQWG 476
Query: 448 FLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPK 507
LCP TP+GE CGL+ ++ + + D IR + + +L G +
Sbjct: 477 MLCPSDTPEGEGCGLVKNLALMTHITTEIDEEPIIRLAFNLGVENVNILGGEEI------ 530
Query: 508 LVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGG 567
V V L+G ++G++ + +++V R L+ L G+V +
Sbjct: 531 ----NNRKVYMVFLNGNILGIVKN--YQRLVNVFRLLRRKG-------LINGFVSIYTQH 577
Query: 568 AYPGLYLFTSPPKFVRP--VRNISLPSEESQNIELIGPFEQVFMEIRCPDGG----DGGR 621
+ + + + + RP + P ++++I+L+ + F + DG D
Sbjct: 578 QHRCIQISSDGGRLCRPYIIVQKGEPLIQAEHIKLLEHGVRCFEDF-LNDGLIEYLDVNE 636
Query: 622 RN----AF-------PATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFS 670
N AF TH EI P +L V A L PY HNQSPRN YQC M KQ MG
Sbjct: 637 ENDSSIAFNESHINEKTTHLEIEPFTLLGVCAGLVPYPHHNQSPRNTYQCAMGKQAMGTI 696
Query: 671 VQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMIL 730
+ R D +Y+L PQ P+V++ T D+ P G NAIVAV++Y+GYD+EDA+IL
Sbjct: 697 GYNQRNRIDTLMYNLVYPQAPMVKSRTIELINFDKLPAGQNAIVAVMSYSGYDIEDALIL 756
Query: 731 NKSSVDRGMCHGQIYQTETIDLSDDGNKV-DR--GQKLFRRNKDAKSLHSVIDSDGLPYV 787
NK+S+DRG IY+ L N+ DR G + K + H +IDSDG+
Sbjct: 757 NKASIDRGYGRCLIYRNAKCTLKRYANQTYDRIMGPLIDSNTKKSVWKHDIIDSDGIAAP 816
Query: 788 GQ-------MIHPGEPYCSIYDKTTNSWRTNSR--------KGSESVFVDYVAVDMKNSK 832
G+ M++ P +I + + +T + KG +V+ V +
Sbjct: 817 GEMVENRKVMVNKSSPSVNIGPVNSGNVQTQTEYKDVPVVFKGPVPAYVEKVMISSNAED 876
Query: 833 NLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAF 892
K + R TR P IGDKFSSRHGQKGV + DMPF+ G+ PD+I+NPH F
Sbjct: 877 AFLIK--LLLRQTRRPEIGDKFSSRHGQKGVTGLIVEQEDMPFNDY-GICPDMIMNPHGF 933
Query: 893 PSRMTIAMLLESVAAK 908
PSRMT+ L+E +A K
Sbjct: 934 PSRMTVGKLIELLAGK 949
>gi|302307227|ref|NP_983821.2| ADL275Cp [Ashbya gossypii ATCC 10895]
gi|299788898|gb|AAS51645.2| ADL275Cp [Ashbya gossypii ATCC 10895]
gi|374107033|gb|AEY95941.1| FADL275Cp [Ashbya gossypii FDAG1]
Length = 1141
Score = 274 bits (701), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 265/977 (27%), Positives = 423/977 (43%), Gaps = 143/977 (14%)
Query: 9 FEPLRELVRHHIESFDYMLDEGLSEMFD-------------------------------- 36
F ++ LV+ H++SF+Y +D L ++
Sbjct: 47 FLKVKGLVKQHLDSFNYFVDVDLKKIIKANEMVLSDVDPEFYLKYVDIRVGRRSNSSKID 106
Query: 37 -----HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQ 91
CR ++Y+ + D+E Y S V+ + G+ P+ML++ +C L GA +
Sbjct: 107 MTPPHECRLRDMTYSAPIFVDIE--YTRGRSIVLHKDVEIGKMPIMLRSNKCILNGASEE 164
Query: 92 KLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRC 151
+ L E + GGYFI+NG E+V IL ++ S R E KA+V
Sbjct: 165 VMAKLNECPLDPGGYFIVNGTEKV----ILVQEQL------SKNRIIVEADEKKAIVQAS 214
Query: 152 VRKDQSSVTLKLYYLL-NGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYD 210
V K Y + N + L +E +P+ IVLKA +DLEI L C D
Sbjct: 215 VTSSTHERKSKTYVVTKNDKIYLKHNSIAEE--VPIVIVLKACGIVSDLEIM-QLVCGND 271
Query: 211 EKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPV----IDGLQSES 266
Y+ + I E +++ T+ Q L++IG + + + LQ E
Sbjct: 272 SSYQ------------DIFAINFEEASKMNIYTQQQALEYIGTKVKTIRRQKLTVLQ-EG 318
Query: 267 YYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGH 326
A+A TVI ++ V D +K + M +++ + + + D+ D + N+ + L G
Sbjct: 319 IEAIATTVIA-HLTVEALDFREKALYVAMMTRRVIMAIHNPKMVDDRDYVGNKRLELAGQ 377
Query: 327 LITIYLKEKLEDWLRKGKKLIQDEIE--NNGKKFDFFNLANIKKVMEKNPSKQIGTSIET 384
L+++ ++ + + K I ++ N + +D N+ S I + +
Sbjct: 378 LMSLLFEDLFKKFNNDFKASIDKVLKKPNRAEMYDALLSINVH-------SNNITSGLNR 430
Query: 385 MLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLLP 443
+ TG + + +RAG T RL+++ + + + F R S R L P
Sbjct: 431 AISTGNWSLKRFK--MERAGVTHVLSRLSYISALGMMTRI--SSQFEKSRKVSGPRALQP 486
Query: 444 ESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIP 503
+G LC TP+GE CGL+ ++ + + D I++ L L+GV I
Sbjct: 487 SQFGMLCTSDTPEGEACGLVKNLALMTHITTD-DEEEPIKN--------LCYLLGVEDIT 537
Query: 504 SLPKLVKSGPPAVLSVLLDGRVVGV--IPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYV 561
L + V L+G ++G P+ + + R KVS ++
Sbjct: 538 LLDS---ASIHLNYGVYLNGTIIGTTRFPARFVNQFRLLRRTGKVSE-----------FI 583
Query: 562 PLSLGGAYPGLYLFTSPPKFVRP---VRN-ISLPSEESQNIELIGPFE-QVFMEIRCPDG 616
+ +++ T + RP VRN S+ + L G + F+++ +
Sbjct: 584 SIYTNSHQKAVHIATDGGRICRPLIIVRNGKSMVTAGHLRRLLEGELQFDDFLKLGLVEY 643
Query: 617 GDGGRRN-AFPA----------THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQ 665
D N ++ A TH EI P +L VA L PY HNQSPRN YQC M KQ
Sbjct: 644 LDVNEENDSYIALYEKDIEEGTTHLEIEPFTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQ 703
Query: 666 TMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDME 725
+G R D LY + PQ P+V++ T D+ P G NA VAV++Y+GYD+E
Sbjct: 704 AIGAIAYNQFKRIDTLLYLMIYPQQPMVKSKTIELIDYDKLPAGQNATVAVMSYSGYDIE 763
Query: 726 DAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSL--HSVIDSDG 783
DA+++NKSS+DRG + + T L N R +++ + + H + DG
Sbjct: 764 DALVINKSSIDRGFGRCETRKKTTTILKRYPNHTQDIIGGMRVDENGEPIWQHQSLGPDG 823
Query: 784 LPYVGQMIHPGEPY------CSIYDKTTNSWRTNSR------KGSESVFVDYVAVDMKNS 831
L VG + G+ Y + D N ++ R + E +D V M S
Sbjct: 824 LGEVGMKVTSGQIYINKSIPTNASDSVLNQVQSQYREAPIIYRAPEPSHIDQVM--MSVS 881
Query: 832 KNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHA 891
N + R R P +GDKFSSRHGQKGVC + DMPF+ G+ PD+I+NPH
Sbjct: 882 DNDQALIKVLLRQNRRPELGDKFSSRHGQKGVCGIIVQQEDMPFND-QGICPDIIMNPHG 940
Query: 892 FPSRMTIAMLLESVAAK 908
FPSRMT+ +LE V+ K
Sbjct: 941 FPSRMTVGKMLELVSGK 957
>gi|409043140|gb|EKM52623.1| hypothetical protein PHACADRAFT_100019 [Phanerochaete carnosa
HHB-10118-sp]
Length = 1141
Score = 274 bits (701), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 266/999 (26%), Positives = 426/999 (42%), Gaps = 176/999 (17%)
Query: 9 FEPLRELVRHHIESFDYMLDEGLSEMF--------------------------------- 35
F ++ LV+ HI+SF+Y +D + +
Sbjct: 38 FLKVKGLVKQHIDSFNYFVDVDIKSILRANSKVTSDVDPRFWLKYTDIHVGFPDRTDPDA 97
Query: 36 -------DHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGA 88
CR +Y+ ++A + QY + V R N G+ P+ML++ +C L G
Sbjct: 98 VDKSVTPHECRLRDTTYSAPILATI--QYTRGKNVVRRPNVNIGRLPIMLRSNKCVLSGR 155
Query: 89 DSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVV 148
+L + E + GGYF++ G E+V IL ++ + + D +G V
Sbjct: 156 TEIQLARMSECPLDPGGYFVVKGTEKV----ILVQEQLSKNRIIVEV-DPVKG----VVQ 206
Query: 149 IRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYL--------LPVGIVLKALVDTNDLE 200
C + K Y +GK YL +P+ I LKAL +D E
Sbjct: 207 ASCTSSTHGGLKSKTYVATK---------KGKIYLRHNSIHEDVPIVIALKALGFQSDKE 257
Query: 201 IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQ---P 257
I LT +E YK + SP + E K + T+ Q L++IG +
Sbjct: 258 IL-LLTAGNNEAYK----SAFSPNLEEAAKS--------GVFTKHQALEYIGSRVKVNRK 304
Query: 258 VIDGLQS--ESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDS 315
VI + E V T++ ++ V D K + M +++ +D + D+ D
Sbjct: 305 VIGPRRPAWEEALEVLATIVLAHVPVVNMDFRGKAIFVATMTRRVLMAMDDEKMVDDRDY 364
Query: 316 LQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGK--KFDFFNLANIKKVMEKN 373
+ N+ + L G L+ + ++ + + K I ++ + +FD FN
Sbjct: 365 VGNKRLELAGQLLALLFEDLFKTFNTNLKSAIDKVLKKPSRTSEFDAFNTMQFM------ 418
Query: 374 PSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGL 433
I + TG + + +RAG T RL+F+ + + + F
Sbjct: 419 -GDHITAGFVRAISTGNWSLKRFK--MERAGVTHVLSRLSFISALGMMTRI--SSQFEKT 473
Query: 434 RTTS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSI 492
R S R L P WG LCP TP+GE CGL+ ++ + + D +R
Sbjct: 474 RKVSGPRALQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDVDEEPIVR--------- 524
Query: 493 LRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVI 552
L ++GV I + GP + V ++G ++G+ + + V + R+L+ A +
Sbjct: 525 LAYMLGVEDISTATGTEIYGPHTYV-VNVNGSIIGL--TRYPGRFVHNFRKLR--RAGRL 579
Query: 553 PDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRP--VRNISLPSEESQNIELIGPFEQVFME 610
+ +V + + + + + + + RP + + P +++I L+ + F +
Sbjct: 580 SE-----FVSVYINHHHRTVLIASDGGRICRPMIIADRGRPRVTTEHILLLKEGKMTFDD 634
Query: 611 ---------IRCPDGGDGG----RRNAFPAT-HEEIHPTGMLSVVANLTPYSDHNQSPRN 656
+ + D + P T H EI P +L VA L PY HNQSPRN
Sbjct: 635 FLKQGLVEYLDVNEENDSYIALYESDIVPTTTHLEIEPFTILGAVAGLIPYPHHNQSPRN 694
Query: 657 MYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAV 716
YQC M KQ +G + R D LY PQ P+V+T T G D P G NA VAV
Sbjct: 695 TYQCAMGKQAIGAIGYNQQSRIDTLLYLSVYPQQPMVKTKTIELIGYDRLPAGQNATVAV 754
Query: 717 LAYTGYDMEDAMILNKSSVDRGMCHGQI----------YQTETIDLSDDGNKVDRGQKLF 766
++Y+GYD+EDA+I NK+S+DRG Q+ Y T D D VD G ++
Sbjct: 755 MSYSGYDIEDALIQNKASLDRGYGRVQVLRKNATLIRKYPNGTYDRLADA-PVDEGSQIQ 813
Query: 767 RRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESV------- 819
++ + +I +DGL VG+ + PG+ Y I +T + N+ G +
Sbjct: 814 KK-------YDIIQADGLAGVGERVDPGDVY--INKQTPTNANDNTFTGQAATVPYKNSP 864
Query: 820 ---------FVDYVAV-DMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWP 869
++D V V D +N + L + R TR P +GDKFSSRHGQKGVC +
Sbjct: 865 MTYKSPVAGYIDKVMVTDTENDQTL---IKVLIRQTRRPELGDKFSSRHGQKGVCGLIVN 921
Query: 870 DIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
DMPF+ G+ PD I+NPH FPSRMT+ ++E +A K
Sbjct: 922 QEDMPFND-QGIVPDTIMNPHGFPSRMTVGKMIELLAGK 959
>gi|350420099|ref|XP_003492398.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like
[Bombus impatiens]
Length = 1130
Score = 274 bits (700), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 251/916 (27%), Positives = 409/916 (44%), Gaps = 113/916 (12%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR ++Y+ + D+E Y+ P+++ G+ P+ML++ C L G +L +
Sbjct: 100 CRLRDLNYSAPITVDIE--YIRGHQPIIKNNLLIGRMPIMLRSSNCVLTGKSHFELSKMN 157
Query: 98 EEAAEMGGYFILNGLERV-------FRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
E + GGYFI+NG E+V R+ I+ +++ +V S E T +V +
Sbjct: 158 ECPHDPGGYFIVNGQEKVILIQEQMLRNRIILEEDSKGCIVASCNSSTHERKTKTNIVGK 217
Query: 151 CVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYD 210
R YY+ + + +PV I+ KA+ +D EI + +
Sbjct: 218 AGR----------YYMRHNIFQDD---------IPVTIIFKAMGIVSDQEIMQLIGT--E 256
Query: 211 EKYKKEKGAVGSPLVSE-RVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYA 269
E++ K+ +P + E V + A+ Q L + + + VI ++
Sbjct: 257 EEFMKK----FAPTLEECHVLNVFAQNQALRFLSNKR-----KQKRYSVIKASVTDEMKD 307
Query: 270 VAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
+ T I ++ V + K + M++K+ + D+ D N+ + L G L++
Sbjct: 308 ILATNILSHVPVIDFNFKMKATYIALMIRKVMKAQSDGKLIDDRDYYGNKRLELAGSLLS 367
Query: 330 IYLKEKLEDWLRKGKKLIQDEIEN-NGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKT 388
+ ++ + + + K++ I +FD I K M ++ QI + + +
Sbjct: 368 LMFEDLFKRFNWELKQIADKNIPKIKAAQFD------IVKHMRQD---QITNGLAFAISS 418
Query: 389 GRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLLPESWG 447
G + +R G T RL+++ + V+ + F R S R L P WG
Sbjct: 419 GNWTIKRFK--MERHGVTQVLSRLSYISALGMMTRVN--SQFEKTRKVSGPRSLQPSQWG 474
Query: 448 FLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPK 507
LCP TP+GE CGL+ ++ + + D +R + + +L G +
Sbjct: 475 MLCPSDTPEGEGCGLVKNLALMTHITTEIDEEPIVRLAFNLGVENVNILGGEEI------ 528
Query: 508 LVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGG 567
V V L+G ++G++ + +++V R L+ L G+V +
Sbjct: 529 ----NNKKVYMVFLNGNILGIVKN--YQRLVNVFRLLRRKG-------LINGFVSIHTQH 575
Query: 568 AYPGLYLFTSPPKFVRP---VRNISLPSEESQNIEL----IGPFEQVFME--IRCPDGGD 618
+ + + + + RP V+N + P + ++I+L I FE E I D +
Sbjct: 576 QHRCIQISSDGGRLCRPYIIVQNGN-PLIQEKHIKLLEQGIRSFEDFLQEGLIEYLDVNE 634
Query: 619 GGRRN-AF-------PATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFS 670
+ AF TH EI P +L V A L PY HNQSPRN YQC M KQ MG
Sbjct: 635 ENDSSIAFNESHINEKTTHLEIEPFTLLGVCAGLVPYPHHNQSPRNTYQCAMGKQAMGTI 694
Query: 671 VQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMIL 730
+ R D +Y+L PQTP+V++ T D+ P G NA VAV++Y+GYD+EDA+IL
Sbjct: 695 GYNQRNRIDTLMYNLVYPQTPMVKSRTIELINFDKLPAGQNATVAVMSYSGYDIEDALIL 754
Query: 731 NKSSVDRGMCHGQIYQTETIDLSDDGNKV-DR--GQKLFRRNKDAKSLHSVIDSDGLPYV 787
NK+S+DRG IY+ L N+ DR G + K H +IDSDG+
Sbjct: 755 NKASIDRGFGRCLIYRNAKCTLKRYANQTYDRIMGPLIDSNTKKPVWKHDIIDSDGIAAP 814
Query: 788 GQ-------MIHPGEPYCSIYDKTTNSWRTNSR--------KGSESVFVDYVAVDMKNSK 832
G+ M++ P +I + +T + KG +V+ V +
Sbjct: 815 GEMVENRKVMVNKSSPAANIGPVNAGNVQTQTEYKDVPVVFKGPVPAYVEKVMISSNAED 874
Query: 833 NLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAF 892
K + R TR P IGDKFSSRHGQKGV + DMPF+ G+ PD+I+NPH F
Sbjct: 875 AFLIK--LLLRQTRRPEIGDKFSSRHGQKGVTGLIVEQEDMPFNDY-GICPDMIMNPHGF 931
Query: 893 PSRMTIAMLLESVAAK 908
PSRMT+ L+E +A K
Sbjct: 932 PSRMTVGKLIELLAGK 947
>gi|393219485|gb|EJD04972.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Fomitiporia mediterranea MF3/22]
Length = 1148
Score = 273 bits (699), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 252/917 (27%), Positives = 399/917 (43%), Gaps = 110/917 (11%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR +Y+ ++ V QY V+R+ N G+ P+ML++ +C L G +L +
Sbjct: 114 CRLRDTTYSAPIL--VTIQYTRGKQVVLRKNVNIGRLPIMLRSNKCVLTGRTEAQLARMT 171
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVV-IRCVRKDQ 156
E + GGYF++ G E+V IL ++ S R E K VV C
Sbjct: 172 ECPLDPGGYFVVKGTEKV----ILVQEQL------SKNRIIVEHDPVKGVVQASCTSSTH 221
Query: 157 SSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKE 216
+ K Y + RL +P+ I LKAL +D EI LT E YK
Sbjct: 222 GGLKSKTY-VATKKERLYLRHNCFHEDIPIVIALKALSIQSDKEIL-LLTAGNTEAYK-- 277
Query: 217 KGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQP--VIDGLQSESYYAVAETV 274
+ SP + E KI + T+ Q L++IG + + G + ++ E
Sbjct: 278 --STFSPNLEEAAKI--------GVFTKHQALEYIGSRVKVNRRVIGPRRPAWEEAMEA- 326
Query: 275 IRDYIFVHLNDNNDKFN----LLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITI 330
+ + H+ NN F + M +++ + + D+ D + N+ + L G L+ +
Sbjct: 327 LATIVLAHVPVNNLDFRPKAIFIATMTRRVLMCLADEKMVDDRDYVGNKRLELAGQLLAL 386
Query: 331 YLKEKLEDWLRKGKKLIQDEIENNGK--KFDFFNLANIKKVMEKNPSKQIGTSIETMLKT 388
++ + + K I ++ + +FD FN + I + T
Sbjct: 387 LFEDLFKTFNTNLKSAIDKVLKKPSRTSEFDAFNTMQFQ-------GDHITAGFVRAIST 439
Query: 389 GRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLLPESWG 447
G + + +RAG T RL+++ + + + F R S R L P WG
Sbjct: 440 GNWSLKRFK--MERAGVTHVLSRLSYISALGMMTRI--SSQFEKTRKVSGPRALQPSQWG 495
Query: 448 FLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPK 507
LCP TP+GE CGL+ ++ + + + IR + + + G +
Sbjct: 496 MLCPSDTPEGEACGLVKNLALMTHITTDVEEEPLIRLVHALGVEDICLATGAEIYGQ--- 552
Query: 508 LVKSGPPAVLSVLLDGRVVGVI--PSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSL 565
V ++G ++G+ PS + V + RRL+ + +V + +
Sbjct: 553 -------NSFVVHVNGAIIGITRYPS----RFVQNFRRLRRAGRFS-------EFVSIYI 594
Query: 566 GGAYPGLYLFTSPPKFVRPVRNI--SLPSEESQNI----ELIGPFEQVFMEIRCPDGGDG 619
+ +Y+ + + RP+ + S P SQ+I + + F+ F+ + D
Sbjct: 595 NHHHKAVYIASDGGRICRPMIIVENSRPKVTSQHIIDLKKQLLTFDD-FLRRGLVEYLDV 653
Query: 620 GRRN-AFPA----------THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMG 668
N ++ A TH EI P +L VA L PY HNQSPRN YQC M KQ +G
Sbjct: 654 NEENDSYIALYEDMIVPTTTHLEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIG 713
Query: 669 FSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAM 728
R D LY + PQ P+V+T + G D+ P G NA VAV++Y+GYD+EDA+
Sbjct: 714 AIAYNQLNRIDTLLYLMVYPQQPMVKTKSIELVGYDKLPAGQNATVAVMSYSGYDIEDAL 773
Query: 729 ILNKSSVDRGMCHGQIYQTETIDLSDDGNKV-DR-GQKLFRRNKDAKSLHSVIDSDGLPY 786
ILNK+S+DRG Q+ + + N DR N + + +I SDGL
Sbjct: 774 ILNKASLDRGYGRCQVMRKNATLIRKYPNGTYDRLADAPLDENGRVQKKYDIIQSDGLAG 833
Query: 787 VGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKAN------- 839
VG+ + PG+ Y +K T S ++ ++ V Y M +P +
Sbjct: 834 VGERVDPGDVYV---NKQTPSNANDNTFTGQAAGVAYKNTPMTYKSPVPGNIDKVMLTDT 890
Query: 840 --------IRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHA 891
+ R TR P +GDKFSSRHGQKGVC + DMPF+ G+ PD I+NPH
Sbjct: 891 ENDQTLVKVLIRQTRRPELGDKFSSRHGQKGVCGLIVNQEDMPFND-DGISPDSIMNPHG 949
Query: 892 FPSRMTIAMLLESVAAK 908
FPSRMT+ ++E +A K
Sbjct: 950 FPSRMTVGKMIELLAGK 966
>gi|158297007|ref|XP_317312.4| AGAP008151-PA [Anopheles gambiae str. PEST]
gi|157014987|gb|EAA12689.4| AGAP008151-PA [Anopheles gambiae str. PEST]
Length = 1089
Score = 273 bits (699), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 247/902 (27%), Positives = 394/902 (43%), Gaps = 118/902 (13%)
Query: 37 HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
CR ++Y+ + D+E Y VVR G+ P+ML++ C L G +L +
Sbjct: 95 ECRLRDMTYSAPITVDIE--YTRGTQRVVRNGLLIGRMPIMLRSSNCVLTGKSDYQLSKV 152
Query: 97 KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQ 156
E + GGYFI+ G E+V +++ +Q M+ + VI+C
Sbjct: 153 NECPMDPGGYFIIRGTEKV---ILIQEQLSWNKMITEDYNG----------VIQCQVTSS 199
Query: 157 SSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKE 216
+ LL R +PV I+LKA+ +D EI
Sbjct: 200 THEKKSRTILLTKHGRYYLKHNSMTEEIPVAIILKAMGIASDQEIMQ------------- 246
Query: 217 KGAVG-SPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHF---QPVIDGLQSESYYAVAE 272
VG P +R L E + + T+ + L+++G + + ++ A
Sbjct: 247 --LVGIDPETQKRFAPSLLEAANHKVFTQQRALEYMGSKLIAKRFTTAATKYKTTADEAR 304
Query: 273 TVIRDYIFVHLNDNNDKFNL----LIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLI 328
++ I H+ + F + + M++++ + S D+ D N+ + L G L+
Sbjct: 305 DLLATTILAHVPVPSFNFQVKAIYVALMIRRVMAAELDRSAVDDRDYYGNKRLELAGSLL 364
Query: 329 TIYLKE--KLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETML 386
++ ++ K +W K+I D+ K F ++++ + I +ET +
Sbjct: 365 SLMFEDLFKRFNW---ELKMIADKNIPKIKAAQFDVGKHMREAL-------ITAGLETAI 414
Query: 387 KTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLLPES 445
TG + +RAG T RL+++ + V+ + F R S R L P
Sbjct: 415 STGNWTIKRFK--MERAGVTQVLSRLSYISALGMMTRVN--SQFEKTRKVSGPRSLQPSQ 470
Query: 446 WGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSL 505
WG LCP TP+GE CGL+ ++ + + D IR +R+L G +
Sbjct: 471 WGMLCPSDTPEGEACGLVKNLALMTHITTEVDEEPVIRLAYNAGVEDIRLLGGETI---- 526
Query: 506 PKLVKSGPPAVLSVLLDGRVVGV-IPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLS 564
P V V ++G ++GV I + +V +RR + A +V +
Sbjct: 527 ------NNPKVFMVFINGNILGVTIAYRRLVEVFRMMRRRGLIGA----------FVSIH 570
Query: 565 LGGAYPGLYLFTSPPKFVRPV------RNISLPSEESQNIELIGPFEQVFMEIRCPDGGD 618
+Y+ T + RP R + L E +N I E
Sbjct: 571 TSFTQRCVYIHTDGGRLCRPYIIVQAGRPLYLDVNE-ENDSFIAYQE------------- 616
Query: 619 GGRRNAFP--ATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKF 676
R+ P TH EI P +L V A L PY HNQSPRN YQC M KQ MG K
Sbjct: 617 ---RDIDPEKTTHLEIEPFTLLGVCAGLVPYPHHNQSPRNTYQCAMGKQAMGIIGYNQKN 673
Query: 677 RADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVD 736
R D +Y++ PQ+P+VR+ T D+ P G NA VAV++Y+GYD+EDA+ILNK+S+D
Sbjct: 674 RIDTLMYNIVYPQSPMVRSRTIELTNFDKLPAGQNATVAVMSYSGYDIEDALILNKASID 733
Query: 737 RGMCHGQIYQTETIDLSDDGNKV-DRGQKLFRRNKDAKSL--HSVIDSDGLPYVGQMIHP 793
RG +Y+ + N+ DR + K + H +D+DG+ + P
Sbjct: 734 RGYGRCLVYKNSKCTIKRYSNQTFDRIMGPMKDGVTGKIIAKHECLDTDGI------VSP 787
Query: 794 GEPYC---SIYDKTTNSWRTNS---RKGSESVFVDYVAVDMKNSKNLPQ-KANIRFRHTR 846
GE ++ +K + ++N+ +K S + Y A + ++ N + I R TR
Sbjct: 788 GERLTCKQTMVNKEMPAVKSNNPIEQKESGQQPIAYSARVLVSTNNEEEFLVKILLRQTR 847
Query: 847 NPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVA 906
P IGDKFSSRHGQKGV + D+PF+ GM PD+++NPH FPSRMT+ LE +
Sbjct: 848 RPEIGDKFSSRHGQKGVTGLIVEQEDLPFNDY-GMSPDMVMNPHGFPSRMTVGKTLELLG 906
Query: 907 AK 908
+K
Sbjct: 907 SK 908
>gi|448100132|ref|XP_004199280.1| Piso0_002709 [Millerozyma farinosa CBS 7064]
gi|359380702|emb|CCE82943.1| Piso0_002709 [Millerozyma farinosa CBS 7064]
Length = 1158
Score = 273 bits (699), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 260/998 (26%), Positives = 430/998 (43%), Gaps = 167/998 (16%)
Query: 9 FEPLRELVRHHIESFDYMLDEGLSEMFD-------------------------------- 36
F ++ LV+ H++SF+Y +D L ++
Sbjct: 48 FLKVKGLVKQHLDSFNYFVDVDLKKIIKANELVLSDVDPEFYLKYLDIRVGHKSSSPPGT 107
Query: 37 --------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGA 88
CR ++Y+ + DVE Y ++ + G+ P+ML++ +C L G
Sbjct: 108 KEVNLAPHECRLRDLTYSAPIYVDVE--YTRGRKIIMHKDLEIGRMPIMLRSNKCILDGI 165
Query: 89 DSQKLVSLKEEAAEMGGYFILNGLERVF-------RSVILPKQNYPMSMVRSSFRDRREG 141
D K+ E + GGYFI+NG E+V ++ I+ + + ++V++S
Sbjct: 166 DEHKMAQYDECPLDPGGYFIVNGTEKVILVQEQLSKNRIIVEADEKKNIVQASVTSSTHE 225
Query: 142 YTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEI 201
K VI + D+ YL + S+ +P+ IVLKA T+DLEI
Sbjct: 226 RKSKTYVI--TKNDK-------IYLKHNSIAED---------VPIVIVLKAAGITSDLEI 267
Query: 202 FNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQ----- 256
L C D Y+ + + E L + T+ Q L +IG+ +
Sbjct: 268 L-QLVCGQDPNYQ------------DLFAVNFEEAARLEVLTQQQALNYIGKRVKTIRRA 314
Query: 257 --PVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPD 314
P + LQ E AVA T+I +I V +K + M +++ + + + D+ D
Sbjct: 315 GAPKLSQLQ-EGIEAVATTIIA-HITVSDLQFREKALYIATMTRRVLMTMHNPKMVDDRD 372
Query: 315 SLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNP 374
+ N+ + L G L+++ ++ + + K I ++ + +F L +I
Sbjct: 373 YVGNKRLELAGQLLSLLFEDLFKKFNSDFKANIDKVLKKPSRTSEFDALLSINI-----H 427
Query: 375 SKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLR 434
S I + + TG + + +RAG T RL+++ + + + F R
Sbjct: 428 SNNITMGMNRAISTGNWSLKRF--KMERAGVTHVLSRLSYISALGMMTRI--SSQFEKSR 483
Query: 435 TTS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSIL 493
S R L P +G LC TP+GE CGL+ ++ + + D ++ L
Sbjct: 484 KVSGPRALQPSQFGMLCTSDTPEGEACGLVKNLALMTHITT---------DDEELPVKNL 534
Query: 494 RVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGV--IPSSEIEKVVAHLRRLKVSAASV 551
+G I + V L+G ++G P S +++ R K+SA
Sbjct: 535 CFTLGCENILEIDSATLHAVTN-FGVYLNGTLIGATRFPVSFVDRFRKLRRSGKISA--- 590
Query: 552 IPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSE---ESQNIELIGPFEQV- 607
+V + + +++ T + RP+ + ++ ++ +++ + E
Sbjct: 591 --------FVSIYTNSHHRAVHIATDGGRICRPLIIVDAENKSRVKAHHLKKLLSNEWAF 642
Query: 608 --FMEIRCPDGGDGGRRN---------AFPATHE-----EIHPTGMLSVVANLTPYSDHN 651
F++ + D N TH+ EI P +L VA L PY HN
Sbjct: 643 DDFLKHGLVEYLDVNEENDSLIALYEEDLKNTHQEFTHLEIEPFTVLGAVAGLIPYPHHN 702
Query: 652 QSPRNMYQCQMAKQTMGFSVQALKF-RADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGT 710
QSPRN YQC M KQ +G ++ +F R D LY + PQ P+V+T T D+ P G
Sbjct: 703 QSPRNTYQCAMGKQAIG-AIGYNQFRRIDTLLYLMVYPQQPMVKTKTIELIDYDKLPAGQ 761
Query: 711 NAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFR--R 768
NA VAV++Y+GYD+EDA++LNK+S+DRG Q+ + TI L N R
Sbjct: 762 NATVAVMSYSGYDIEDALVLNKASIDRGFGRCQVLRKNTISLKRYPNHTKDIVAGMRVDE 821
Query: 769 NKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIY-------------DKTTNSWRTNSR-- 813
N D HS + +DGL VG + G+ Y + D+ S ++
Sbjct: 822 NGDPIFSHSSLGTDGLGEVGMQVENGQVYVNKCVPTNAGESVLGSPDQHVQSAESHRETP 881
Query: 814 ---KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPD 870
KG E +VD V + + ++ K + R TR P +GDKFSSRHGQKGVC +
Sbjct: 882 AYYKGPEPSYVDQVMMSVGDNDQALIK--VLLRQTRRPELGDKFSSRHGQKGVCGIIVQQ 939
Query: 871 IDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
D+PF+ G+ PD+I+NPH FPSRMT+ +LE ++ K
Sbjct: 940 EDLPFND-DGISPDIIMNPHGFPSRMTVGKMLELISGK 976
>gi|195024375|ref|XP_001985862.1| GH20856 [Drosophila grimshawi]
gi|193901862|gb|EDW00729.1| GH20856 [Drosophila grimshawi]
Length = 1137
Score = 273 bits (699), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 255/935 (27%), Positives = 406/935 (43%), Gaps = 152/935 (16%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR +Y+ + D+E Y + R G+ P+ML+ C L G +L L
Sbjct: 110 CRLRDTTYSAPISVDIE--YTRGTQRIKRNNLLIGRMPLMLRCSNCVLTGKSEFELSKLN 167
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRC----VR 153
E + GGYF++ G E+V +++ +Q M+ F V++C
Sbjct: 168 ECPLDPGGYFVVRGQEKV---ILIQEQLSWNKMLTEDFNG----------VVQCQVTSST 214
Query: 154 KDQSSVTLKL-----YYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCC 208
++ S TL L YYL + S+ +P+ ++ KAL +D EI H+
Sbjct: 215 HEKKSRTLVLSKHGKYYLKHNSMTDD---------IPIVVIFKALGVVSDQEIMTHIGL- 264
Query: 209 YDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIG-----EHFQPVIDGLQ 263
D + + GA L E +L + T+ + L ++G + FQ +
Sbjct: 265 -DARSQNRFGAS------------LLEAFNLKVFTQQRALDYMGSKLVVKRFQSATNKTP 311
Query: 264 SESYYAVAETVIRDYIFVHLNDNNDKFNL----LIFMLQKLFSLVDHTSVSDNPDSLQNQ 319
SE A ++ I H+ +N F + + M++++ + ++ D+ D N+
Sbjct: 312 SEE----ARELLLTTILAHVPVDNFNFQMKAIYVSLMVRRVMAAELDKTLFDDRDYYGNK 367
Query: 320 EILLPGHLITIYLKE--KLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQ 377
+ L G L+++ ++ K +W K+I D+ K F V++ + Q
Sbjct: 368 RLELAGSLMSLMFEDLFKRMNW---ELKMIADKNIPKVKAAQF-------DVVKHMRAAQ 417
Query: 378 IGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS 437
I +E+ + +G + +RAG T RL+++ + V+ + F R S
Sbjct: 418 ITVGLESAISSGNWTIKRFK--MERAGVTQVLSRLSYISALGMMTRVN--SQFEKTRKVS 473
Query: 438 -VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
R L P WG LCP TP+GE CGL+ ++ + + D R + +R +
Sbjct: 474 GPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTEVDERPVMTLAYNAGVEDIREV 533
Query: 497 IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGV-IPSSEIEKVVAHLRRLKVSAASVIPDD 555
G M P V V ++G V+G+ I + + + ++RR +
Sbjct: 534 SGNPM----------NNPHVFLVFINGNVLGLTINQKHLVRNLRYMRRKGRMGS------ 577
Query: 556 LEVGYVPLSLGGAYPGLYLFTSPPKFVRP---VRNISLPSEESQNIELIGPFEQV--FME 610
+V + +++ T + RP V N+ E+ EL+ + F+
Sbjct: 578 ----FVSIHTSYTQRCIFIHTDGGRLCRPYIIVDNMRPLVEQRHLDELLRGIRKFDDFLH 633
Query: 611 IRCPDGGDGGRRN-AFPA----------THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQ 659
+ D N +F A TH EI P +L V A L PY HNQSPRN YQ
Sbjct: 634 DGLIEYLDVNEENDSFIAWNEEHIEPLTTHLEIEPFTLLGVCAGLVPYPHHNQSPRNTYQ 693
Query: 660 CQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAY 719
C M KQ MG K R D +Y+L PQ P+V++ T D+ P G NA VAV++Y
Sbjct: 694 CAMGKQAMGMIGYNQKNRIDSLMYNLVYPQAPMVKSRTIELTNFDKLPAGQNATVAVMSY 753
Query: 720 TGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKV-DRGQKLFRRNKDAKSL--H 776
+GYD+EDA+ILNK+S+DRG +Y+ + N+ DR + K + H
Sbjct: 754 SGYDIEDALILNKASIDRGYGRCLVYKNSKCTVKRYANQTFDRIMGPVKDALTNKVIFKH 813
Query: 777 SVIDSDGLPYVGQMIH-----------------------PGEPYCSIYDKTTNSWRTNSR 813
V+D+DG+ G+M+ P PY ++ S
Sbjct: 814 DVLDTDGIVAPGEMVQNKQIMINKEMPAVTSINPLEGQSPQVPYTAV---------PISY 864
Query: 814 KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDM 873
KG E +++ V V + ++ K I R TR P IGDKFSSRHGQKGV + DM
Sbjct: 865 KGPEPSYIERVMVSANSEEDFLIK--ILLRQTRIPEIGDKFSSRHGQKGVTGLIVDQEDM 922
Query: 874 PFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
PF+ G+ PD+I+NPH FPSRMT+ LE + K
Sbjct: 923 PFNDY-GICPDMIMNPHGFPSRMTVGKTLELLGGK 956
>gi|343427664|emb|CBQ71191.1| probable DNA-directed RNA polymerase III, 130 KD subunit
[Sporisorium reilianum SRZ2]
Length = 1170
Score = 273 bits (698), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 266/1010 (26%), Positives = 411/1010 (40%), Gaps = 188/1010 (18%)
Query: 9 FEPLRELVRHHIESFDYMLDEGLSEMFD-------------------------------- 36
F ++ LV+ HI+S++Y +D L +
Sbjct: 57 FLQVKGLVKQHIDSYNYFVDHDLKNIIKANEKITSDIDPKFYLKYTDITVGEPRRYDGDA 116
Query: 37 --------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGA 88
CR I+Y+ + ++E Y G + R+ G+ PVML++ +C L
Sbjct: 117 LQRPITPHECRLRDITYSAHIFVNIE--YTRGGKIIRRKNVAIGRIPVMLRSNKCVLANK 174
Query: 89 DSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVV 148
++L + E + GGYF++ G E+V IL ++ S R E T K V
Sbjct: 175 SEKELAKMSECPLDPGGYFVVKGTEKV----ILVQEQL------SKNRIIVEADTKKGTV 224
Query: 149 IRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYL--------LPVGIVLKALVDTNDLE 200
V K Y L GK YL +P+ + KA+ D E
Sbjct: 225 SASVTSSTHERKSKSYVLTK---------HGKIYLKHNSLHEDIPIAVAFKAMGIQADRE 275
Query: 201 IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
I L +D+ +K E I L E L + TR Q L +IG +
Sbjct: 276 IL-QLVAGHDDIHK------------ELFAINLEEAARLGIYTRKQALDYIGARAKASRK 322
Query: 261 GLQ-----SESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDS 315
L +E V TVI ++ V + K + M++++ + D+ D
Sbjct: 323 PLSMRRPLAEEALDVLATVIMAHVPVERLNFRPKAIYIASMVRRVLMAMQDEKKVDDRDY 382
Query: 316 LQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKK------FDFFNLANIKKV 369
+ N+ + L G L+ + ED +K ++ I+ KK FD FN +
Sbjct: 383 VGNKRLELAGQLLALLF----EDLFKKFNSDLKINIDKVLKKPNRTVEFDAFNQFHFN-- 436
Query: 370 MEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGAS 429
I + TG + + +RAG T RL+F+ + + +
Sbjct: 437 -----GDYITAGFVRAISTGNWSLKRFK--MERAGITHVLSRLSFIAALGMMTRI--SSQ 487
Query: 430 FAGLRTTS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKM 488
F R S R L P WG LCP TP+GE CGL+ ++ T + + + R +
Sbjct: 488 FEKTRKVSGPRALQPSQWGMLCPSDTPEGEACGLVKNLALTTHITTDVEEEPIARIAFTL 547
Query: 489 RTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSA 548
+ +L G + P V L+G V+GV + ++ V RRL+
Sbjct: 548 GVEDIHLLTGAELYR----------PDSYVVYLNGNVLGV--TRFPQRFVHQFRRLR--R 593
Query: 549 ASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPV-----------------RNISLP 591
A I + +V + + +Y+ + + RP+ R +
Sbjct: 594 AGRISE-----FVSVYTNNHHQTVYIASDGGRICRPLIIVDAVTGQPRVTESHMRQLKSG 648
Query: 592 SEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFP--ATHEEIHPTGMLSVVANLTPYSD 649
+ + G E V + R P TH EI P +L VA L PY
Sbjct: 649 ARRFDDFLSNGLIEYVDVNEENDANIAMYEREIKPQYTTHLEIEPFTLLGAVAGLIPYPH 708
Query: 650 HNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTG 709
HNQSPRN Y C MAKQ GF R D LY + PQ P+V++ T G D+ P G
Sbjct: 709 HNQSPRNTYHCAMAKQAQGFIGHNQLVRIDTLLYLMLYPQQPMVKSRTVELVGYDKLPGG 768
Query: 710 TNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQI----------YQTETIDLSDDGNKV 759
TNA++AV++++GYD+EDA++LNK+S+DRG Q Y T D D
Sbjct: 769 TNAMLAVMSFSGYDIEDALVLNKASLDRGFGRSQTMKKSSTVIRKYPNGTHDRLADAPVD 828
Query: 760 DRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPY------CSIYDKTTNSWRTNSR 813
D K +R + ++++DG+ VG+ + G+ Y + D ++ + +
Sbjct: 829 DSTGKRQKR-------YDILEADGIAGVGERVEQGDVYVNKQTPVNANDNSSAAIMIGAS 881
Query: 814 KGSESV---------------FVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRH 858
+ SV +VD V + +S KA I R TR P +GDKFSSRH
Sbjct: 882 NAAASVAYKSAPLSYKPPVSGYVDQVLITDTDSDQTLIKALI--RQTRRPELGDKFSSRH 939
Query: 859 GQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
GQKGV + DMPF+ G+ PD+I+NPH FPSRMT+ ++E ++ K
Sbjct: 940 GQKGVIGLIVQQEDMPFTD-EGINPDIIMNPHGFPSRMTVGKMIELLSGK 988
>gi|392587347|gb|EIW76681.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Coniophora puteana RWD-64-598 SS2]
Length = 1143
Score = 273 bits (698), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 263/1000 (26%), Positives = 421/1000 (42%), Gaps = 178/1000 (17%)
Query: 9 FEPLRELVRHHIESFDYMLDEGLSEMFD-------------------------------- 36
F ++ LV+ HI+SF+Y +D + +
Sbjct: 41 FLKVKGLVKQHIDSFNYFVDVDIKNIVKANNKVTSDVDPRFWLKYTDIHVGFPDRTDLDA 100
Query: 37 --------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGA 88
CR I+Y+ ++ V QY + V R N G+ P+ML++ +C L G
Sbjct: 101 IDKSITPHECRLRDITYSAPIL--VTIQYTRGKNVVKRPNVNIGRLPIMLRSSKCILTGK 158
Query: 89 DSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVV 148
+L + E + GGYF++ G E+V +++ +Q ++ + D +G +
Sbjct: 159 SEAQLARMTECPLDPGGYFVVKGTEKV---ILVQEQLSKNRIIVET--DPVKGVVQSS-- 211
Query: 149 IRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYL--------LPVGIVLKALVDTNDLE 200
C + K Y +GK YL +P+ I LKAL +D E
Sbjct: 212 --CTSSTHGGLKSKTYVATK---------KGKIYLRHNSIHEDVPIVIALKALGIQSDKE 260
Query: 201 IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQP--V 258
I LT E YK A L + L + TR Q L+ IG +
Sbjct: 261 IL-LLTAGNTEAYKLAFSAN------------LEDAARLGVFTRHQALEWIGTRVKVNRK 307
Query: 259 IDGLQSESYYAVAE---TVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDS 315
+ G + ++ E T++ ++ V+ D K + M +++ +D + D+ D
Sbjct: 308 VVGPRRPAWEEALEALATIVLAHVPVNGLDFRPKAIFVATMTRRVLMCMDDEKMVDDRDY 367
Query: 316 LQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGK--KFDFFNLANIKKVMEKN 373
+ N+ + L G L+ + ++ + + K I ++ + +FD FN +
Sbjct: 368 VGNKRLELAGQLLALLFEDLFKTFNTNLKSAIDKVLKKPSRTNEFDAFNTMQFQ------ 421
Query: 374 PSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGL 433
I + + TG + + +RAG T RL+F+ + + + F
Sbjct: 422 -GDHITSGFVRAISTGNWSLKRFK--MERAGVTHVLSRLSFISALGMMTRI--SSQFEKT 476
Query: 434 RTTS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSI 492
R S R L P WG LCP TP+GE CGL+ ++ + + + IR
Sbjct: 477 RKVSGPRALQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDVEEEPIIR--------- 527
Query: 493 LRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVI 552
+ ++GV I SL + P V ++G ++G+ + + V + RRL+ +
Sbjct: 528 IAYMLGVEDI-SLASGTEIYGPHTFVVNVNGTIIGL--TRYPTRFVTNFRRLRRAGRFS- 583
Query: 553 PDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNI--SLPSEESQNIELIG----PFEQ 606
+V + + + +++ + + RP+ + P S +I L+ F+
Sbjct: 584 ------EFVGVYVNHHHRTVHIASDGGRICRPMIIVEDGRPRVNSGHISLLKQGHLSFDD 637
Query: 607 VFMEIRCPDGGDGGRRN-----------AFPATHEEIHPTGMLSVVANLTPYSDHNQSPR 655
F+ + D N TH EI P +L VA L PY HNQSPR
Sbjct: 638 -FLRQGLVEYLDVNEENDSYIALYESDIVATTTHLEIEPFTILGAVAGLIPYPHHNQSPR 696
Query: 656 NMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVA 715
N YQC M KQ +G R D LY PQ P+V+T T G D P G NA VA
Sbjct: 697 NTYQCAMGKQAIGAIGYNQFNRIDTLLYLSVYPQQPMVKTKTIELIGYDRLPAGQNATVA 756
Query: 716 VLAYTGYDMEDAMILNKSSVDRGMCHGQI----------YQTETIDLSDDGNKVDRGQKL 765
V++Y+GYD+EDA+ILNK+S+DRG Q+ Y T D D D GQ
Sbjct: 757 VMSYSGYDIEDALILNKASLDRGYGRCQVLRKNATLIRKYPNGTFDRLADAPLDDNGQ-- 814
Query: 766 FRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESV------ 819
+ + +I DGL VG+ + PG+ Y + +T + N+ G +
Sbjct: 815 ------IQKKYDIIQLDGLAGVGERVDPGDVY--VNKQTPTNANDNTFTGQAAAVPYKNA 866
Query: 820 ----------FVDYVAV-DMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLW 868
++D + V D +N + L + R TR P +GDKFSSRHGQKGVC +
Sbjct: 867 PLSYKSPVAGYIDKLMVSDTENDQTL---IKVLIRQTRRPELGDKFSSRHGQKGVCGLIV 923
Query: 869 PDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
DMPF+ G+ PD I+NPH FPSRMT+ ++E ++ K
Sbjct: 924 NQEDMPFND-QGINPDTIMNPHGFPSRMTVGKMIELLSGK 962
>gi|125843259|ref|XP_690811.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 isoform 2
[Danio rerio]
Length = 1130
Score = 273 bits (698), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 254/931 (27%), Positives = 414/931 (44%), Gaps = 141/931 (15%)
Query: 37 HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
CR ++Y+ + D+E Y ++R G+ P+ML++ C L G + L
Sbjct: 99 ECRLRDMTYSAPITVDIE--YTRGSQRIIRNALPIGRMPIMLRSSNCVLTGKTPMEFSKL 156
Query: 97 KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRC-VRKD 155
E + GGYFI+ G E+V +++ +Q +S R R+G +V +K
Sbjct: 157 NECPLDPGGYFIVKGQEKV---ILIQEQ---LSKNRIIVDQDRKGTVGASVTSSTHEKKS 210
Query: 156 QSSVTLKLYYLLNGSVRLGFWLQGKEYL--------LPVGIVLKALVDTNDLEIFNHLTC 207
++++ +K QG+ YL P+ I+ KA+ +D EI +
Sbjct: 211 RTNMIVK---------------QGRFYLKHNTLSEDAPIAIIFKAMGVESDQEIVQMIGT 255
Query: 208 CYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQ-PVIDGLQSES 266
++ A +P L E Q + T+ Q L++IG + + G ++
Sbjct: 256 ------EEHVMAAFAP--------SLEECQKAQIFTQTQALRYIGNKVRRQRMWGGPKKT 301
Query: 267 YYAVAETVIRDYIFVHLNDNNDKFN----LLIFMLQKLFSLVDHTSVSDNPDSLQNQEIL 322
A ++ I H+ F L M++++ L + D+ D N+ +
Sbjct: 302 KMEEARELLASTILTHVPVKEFNFRAKCIYLAVMVRRVI-LAQGDNKVDDRDYYGNKRLE 360
Query: 323 LPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSI 382
L G L+++ ++ + + + KK I D+I + F ++ K M ++ QI +
Sbjct: 361 LAGQLLSLLFEDLFKKFNSELKK-IADQIIPKQRAAQF----DVVKHMRQD---QITNGM 412
Query: 383 ETMLKTGRLATQT-GLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRK 440
+ TG + + +D R G T RL+F+ + + + F R S R
Sbjct: 413 VNAISTGNWSLKRFKMD---RQGVTQVLSRLSFISALGMMTRI--SSQFEKTRKVSGPRS 467
Query: 441 LLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVG 500
L P WG LCP TP+GE CGL+ ++ + + + I+ + + +L G
Sbjct: 468 LQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIIKLAFNLGVEDVNLLCGEE 527
Query: 501 MIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGY 560
+ P V V L+G ++GVI + +K+V R ++ A I + +
Sbjct: 528 L----------SYPTVFLVFLNGNILGVI--RDHQKLVYTFRLMR--RAGFINE-----F 568
Query: 561 VPLSLGGAYPGLYLFTSPPKFVRP---VRNISLPSEESQNIELIG----PFEQVFME--I 611
V +S +Y+ + + RP V+N P+ ++++IE + FE E +
Sbjct: 569 VSISTNLTDRCVYISSDGGRLCRPYIIVKN-GKPAVKNKHIEELSQGYRTFEDFLHESLV 627
Query: 612 RCPDGGDGGRRN--------AFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMA 663
D + N + TH EI P +L V A L PY HNQSPRN YQC M
Sbjct: 628 EYLDVNEENDCNIALYEHMISKDTTHLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMG 687
Query: 664 KQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYD 723
KQ MG + R D +Y L PQ P+V+T T ++ P G NA VAV++Y+GYD
Sbjct: 688 KQAMGTIGYNQRNRIDTLMYLLAYPQRPMVKTKTIELIDFEKLPAGQNATVAVMSYSGYD 747
Query: 724 MEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKV-DR--GQKLFRRNKDAKSLHSVID 780
+EDA++LNK+S+DRG +Y+ L N+ D+ G L + HS++D
Sbjct: 748 IEDALVLNKASLDRGFGRCLVYKNAKCTLRRYTNQTFDKVMGPMLDAETRKPIWRHSILD 807
Query: 781 SDGLPYVGQMI-----------------------HPGEPYCSIYDKTTNSWRTNSRKGSE 817
+DG+ G+ + PG+P Y + S+ KG+
Sbjct: 808 ADGICSPGEKVENKQVLVNKSMPTVTQTPLEGSAQPGQPQ---YREVPVSY-----KGAT 859
Query: 818 SVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSG 877
+++ V + K I R TR P IGDKFSSRHGQKGVC + P DMPF
Sbjct: 860 DSYIEKVMISSNAEDAFLVK--ILLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCD 917
Query: 878 VTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
+G+ PD+I+NPH +PSRMT+ L+E +A K
Sbjct: 918 -SGICPDIIMNPHGYPSRMTVGKLIELLAGK 947
>gi|255569145|ref|XP_002525541.1| DNA-directed RNA polymerase III subunit, putative [Ricinus
communis]
gi|223535120|gb|EEF36800.1| DNA-directed RNA polymerase III subunit, putative [Ricinus
communis]
Length = 1139
Score = 273 bits (697), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 272/987 (27%), Positives = 442/987 (44%), Gaps = 168/987 (17%)
Query: 8 DFEPLRELVRHHIESFDYMLDEGL------------------------------SEMFD- 36
+F +R LV+ H++SF+Y ++ G+ S++ D
Sbjct: 43 EFLKVRGLVKQHLDSFNYFVNIGIKKIVRANDRIVSTVDPGIYLRFKDVRIGTPSDIMDG 102
Query: 37 --------HCRQAKISYTGKLMADVEFQY--LDAGSPVVRERFNFGQFPVMLKTRRCHLQ 86
CR + +Y ++ +VE+ Y D + V + G+ P+ML++R C L
Sbjct: 103 VSEQLSPHMCRLSDKTYAAPILVNVEYIYGSHDQKTRVEKNDVVIGRMPIMLRSRSCVLY 162
Query: 87 GADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKA 146
G D +L L E + GGYF++ G E+V +++ +Q +S R ++G + +
Sbjct: 163 GKDEAELARLGECPLDPGGYFVIKGTEKV---ILIQEQ---LSKNRIIIDTDKKGNINAS 216
Query: 147 VVIRC-VRKDQSSVTL---KLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIF 202
V K ++ + + K+Y LN V+ +P+ +V+KA+ +D E+
Sbjct: 217 VTSSTEATKSKTIIQMEKEKMYLCLNQFVK----------KIPIMVVIKAMGMESDQEVV 266
Query: 203 NHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGL 262
+ D +Y S L+ ++ E LS+ T+ + L++ +DG
Sbjct: 267 QMVG--RDPRY--------SALLLPSIE----ECAGLSIYTQQKALEY--------LDGK 304
Query: 263 QSESYYAVAETVIRDYIF----VHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQN 318
++ A T++RD VH N+ K + ML+++ + + D+ D + N
Sbjct: 305 ENR-----ALTILRDVFLANVPVHKNNFRPKCLYVAVMLRRMMEAMLNKDAMDDKDYVGN 359
Query: 319 QEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQI 378
+ + L G LI++ ++ + + + ++ I D + + F+LA + ++ N I
Sbjct: 360 KRLELSGQLISLLFEDLFKTMITEVQRTI-DTVLTKQNRSSRFDLA--QYIVRDN----I 412
Query: 379 GTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS- 437
+E L TG + R G T RL+++ + V F R S
Sbjct: 413 TNGLERTLSTGNFDVKRF--KMHRKGMTQVLVRLSYIASLGMMTRV--SPQFEKSRKVSG 468
Query: 438 VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLI 497
R L P WG LCP TP+GE CGL+ ++ V + D G + L +
Sbjct: 469 PRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTT-DDEEGPLIS--------LCYCL 519
Query: 498 GVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLE 557
GV + L P + L V+ +G ++G + V +R+L+ + +
Sbjct: 520 GVEDLELLSGEELHTPNSFL-VIFNGLILG--KHRRPQYFVNSMRKLRRAG--------K 568
Query: 558 VG-YVPLSLGGAYPGLYLFTSPPKFVRPV----RNISLPSEESQNIEL---IGPFEQVFM 609
+G +V + + +YL + + RP+ R +S E EL + F+
Sbjct: 569 IGEFVSVFVNEKQRAVYLASDGGRVCRPLVIADRGVSRIKEHHMK-ELRDGVRTFDDFLR 627
Query: 610 EIRCPDGGDGGRRNAFPATHE----------EIHPTGMLSVVANLTPYSDHNQSPRNMYQ 659
+ NA A +E EI P +L V A L P+ HNQSPRN YQ
Sbjct: 628 DGLIEYLDVNEENNALVALYEGEATPETTHIEIEPFTILGVCAGLIPFPHHNQSPRNTYQ 687
Query: 660 CQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAY 719
C M KQ MG FR D LY L PQ P++ T T G D+ G NA VAV++Y
Sbjct: 688 CAMGKQAMGNIAYNQLFRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMSY 747
Query: 720 TGYDMEDAMILNKSSVDRGMCHGQIYQT-ETIDLSDDGNKVDRGQKLFRRNKDAKSLHSV 778
+GYD+EDA+++NK+S+DRG + + I + DR + R ++ + V
Sbjct: 748 SGYDIEDAIVMNKASLDRGFGRCIVMKKYPAIRQKYENGASDR---ILRPDRTVER-ERV 803
Query: 779 IDSDGLPYVGQMIHPGEPY----CSIYD----KTTNS-----WRTN--SRKG--SESVFV 821
+D DGL G++I P + Y C I K++ + +R + S KG ES +
Sbjct: 804 LDYDGLAAPGEIIKPSDIYVKKECPIDTMGPVKSSAALENIKYRPSPLSYKGPEGESPVI 863
Query: 822 DYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGM 881
D VA+ + NL K I RHTR P +GDKFSSRHGQKGVC + D PFS G+
Sbjct: 864 DRVALSSDRNNNLCIKVMI--RHTRRPEVGDKFSSRHGQKGVCGTIIQQEDFPFSE-RGI 920
Query: 882 RPDLIINPHAFPSRMTIAMLLESVAAK 908
PDLI+NPH FPSRMT+ ++E + K
Sbjct: 921 CPDLIMNPHGFPSRMTVGKMIELLGGK 947
>gi|340720183|ref|XP_003398521.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like
[Bombus terrestris]
Length = 1128
Score = 273 bits (697), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 250/919 (27%), Positives = 406/919 (44%), Gaps = 119/919 (12%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR ++Y+ + D+E Y+ P+++ G+ P+ML++ C L G +L +
Sbjct: 98 CRLRDLNYSAPITVDIE--YIRGHQPIIKNNLLIGRMPIMLRSSNCVLTGKSHFELSKMN 155
Query: 98 EEAAEMGGYFILNGLERV-------FRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
E + GGYFI+NG E+V R+ I+ +++ +V S E T +V +
Sbjct: 156 ECPHDPGGYFIVNGQEKVILIQEQMLRNRIILEEDSKGCIVASCNSSTHERKTKTNIVGK 215
Query: 151 CVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYD 210
R YY+ + + +PV I+ KA+ +D EI + +
Sbjct: 216 GGR----------YYMRHNIFQDD---------IPVTIIFKAMGIVSDQEIMQLIGT--E 254
Query: 211 EKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQ----PVIDGLQSES 266
E++ K+ L E L++ + Q L+ + + VI ++
Sbjct: 255 EEFMKKFAPT------------LEECHVLNVFAQNQALRFLSNKRKQKRYSVIKSSVTDE 302
Query: 267 YYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGH 326
+ T I ++ V + K + M++K+ + D+ D N+ + L G
Sbjct: 303 MKDILATNILSHVPVIDFNFKMKATYIALMIRKVMKAQSDGKLVDDRDYYGNKRLELAGS 362
Query: 327 LITIYLKEKLEDWLRKGKKLIQDEIEN-NGKKFDFFNLANIKKVMEKNPSKQIGTSIETM 385
L+++ ++ + + + K++ I +FD I K M ++ QI +
Sbjct: 363 LLSLMFEDLFKRFNWELKQIADKNIPKIKAAQFD------IVKHMRQD---QITNGLAFA 413
Query: 386 LKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLLPE 444
+ +G + +R G T RL+++ + V+ + F R S R L P
Sbjct: 414 ISSGNWTIKRFK--MERHGVTQVLSRLSYISALGMMTRVN--SQFEKTRKVSGPRSLQPS 469
Query: 445 SWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPS 504
WG LCP TP+GE CGL+ ++ + + D +R + + +L G +
Sbjct: 470 QWGMLCPSDTPEGEGCGLVKNLALMTHITTEIDEEPIVRLAFNLGVENVNILGGEEI--- 526
Query: 505 LPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLS 564
V V L+G ++G++ + +++V R L+ L G+V +
Sbjct: 527 -------NNKKVYMVFLNGNILGIVKN--YQRLVNVFRLLRRKG-------LINGFVSIH 570
Query: 565 LGGAYPGLYLFTSPPKFVRP---VRNISLPSEESQNIEL----IGPFEQVFME--IRCPD 615
+ + + + + RP V+N + P + +I+L I FE E I D
Sbjct: 571 TQHQHRCIQISSDGGRLCRPYIIVQNGN-PLIQENHIKLLEQGIRSFEDFLQEGLIEYLD 629
Query: 616 GGDGGRRN-AF-------PATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTM 667
+ + AF TH EI P +L V A L PY HNQSPRN YQC M KQ M
Sbjct: 630 VNEENDSSIAFNESHINEKTTHLEIEPFTLLGVCAGLVPYPHHNQSPRNTYQCAMGKQAM 689
Query: 668 GFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDA 727
G + R D +Y+L PQTP+V++ T D+ P G NA VAV++Y+GYD+EDA
Sbjct: 690 GTIGYNQRNRIDTLMYNLVYPQTPMVKSRTIELINFDKLPAGQNATVAVMSYSGYDIEDA 749
Query: 728 MILNKSSVDRGMCHGQIYQTETIDLSDDGNKV-DR--GQKLFRRNKDAKSLHSVIDSDGL 784
+ILNK+S+DRG IY+ L N+ DR G + K H +IDSDG+
Sbjct: 750 LILNKASIDRGFGRCLIYRNAKCTLKRYANQTYDRIMGPLIDSNTKKPVWKHDIIDSDGI 809
Query: 785 PYVGQ-------MIHPGEPYCSIYDKTTNSWRTNSR--------KGSESVFVDYVAVDMK 829
G+ M++ P +I + +T + KG +V+ V +
Sbjct: 810 AAPGEMVENRKVMVNKSSPAANIGPVNAGNVQTQTEYKDVPVVFKGPVPAYVEKVMISSN 869
Query: 830 NSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINP 889
K + R TR P IGDKFSSRHGQKGV + DMPF+ G+ PD+I+NP
Sbjct: 870 AEDAFLIK--LLLRQTRRPEIGDKFSSRHGQKGVTGLIVEQEDMPFNDY-GICPDMIMNP 926
Query: 890 HAFPSRMTIAMLLESVAAK 908
H FPSRMT+ L+E +A K
Sbjct: 927 HGFPSRMTVGKLIELLAGK 945
>gi|448103831|ref|XP_004200136.1| Piso0_002709 [Millerozyma farinosa CBS 7064]
gi|359381558|emb|CCE82017.1| Piso0_002709 [Millerozyma farinosa CBS 7064]
Length = 1158
Score = 273 bits (697), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 256/998 (25%), Positives = 433/998 (43%), Gaps = 167/998 (16%)
Query: 9 FEPLRELVRHHIESFDYMLDEGLSEMFD-------------------------------- 36
F ++ LV+ H++SF+Y +D L ++
Sbjct: 48 FLKVKGLVKQHLDSFNYFVDVDLKKIIKANELVLSDVDPEFYLKYLDIRVGHKSSSPPGT 107
Query: 37 --------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGA 88
CR ++Y+ + DVE Y ++ + G+ P+ML++ +C L G
Sbjct: 108 KEVNLAPHECRLRDLTYSAPIYVDVE--YTRGRKIIMHKDLEIGRMPIMLRSNKCILDGI 165
Query: 89 DSQKLVSLKEEAAEMGGYFILNGLERVF-------RSVILPKQNYPMSMVRSSFRDRREG 141
D K+ E + GGYFI+NG E+V ++ I+ + + ++V++S
Sbjct: 166 DEHKMAQYDECPLDPGGYFIVNGTEKVILVQEQLSKNRIIVEADEKKNIVQASVTSSTHE 225
Query: 142 YTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEI 201
K VI + D+ YL + S+ +P+ IVLKA T+DLEI
Sbjct: 226 RKSKTYVI--TKNDK-------IYLKHNSIAED---------VPIVIVLKAAGITSDLEI 267
Query: 202 FNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQ----- 256
L C D Y+ + + E L + T+ Q L +IG+ +
Sbjct: 268 L-QLVCGQDPNYQ------------DLFAVNFEEAARLEVLTQQQALNYIGKRVKTIRRA 314
Query: 257 --PVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPD 314
P + LQ E AVA T+I +I V +K + M +++ + + + D+ D
Sbjct: 315 GAPKLSQLQ-EGIEAVATTIIA-HITVSDLQFREKALYIATMTRRVLMTMHNPKMVDDRD 372
Query: 315 SLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNP 374
+ N+ + L G L+++ ++ + + K I ++ + +F L +I
Sbjct: 373 YVGNKRLELAGQLLSLLFEDLFKKFNSDFKANIDKVLKKPSRTSEFDALLSINI-----H 427
Query: 375 SKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLR 434
S I + + TG + + +RAG T RL+++ + + + F R
Sbjct: 428 SNNITMGMNRAISTGNWSLKRF--KMERAGVTHVLSRLSYISALGMMTRI--SSQFEKSR 483
Query: 435 TTS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSIL 493
S R L P +G LC TP+GE CGL+ ++ + + D ++ L
Sbjct: 484 KVSGPRALQPSQFGMLCTSDTPEGEACGLVKNLALMTHITT---------DDEELPVKNL 534
Query: 494 RVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGV--IPSSEIEKVVAHLRRLKVSAASV 551
+G I + + L+G ++G P S +++ R K+SA
Sbjct: 535 CFTLGCENILEIDSATLHAVTN-FGIYLNGTLIGATRFPVSFVDRFRKLRRSGKISA--- 590
Query: 552 IPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSE---ESQNIELIGPFEQV- 607
+V + + +++ T + RP+ + ++ ++ +++ + E
Sbjct: 591 --------FVSIYTNSHHRAVHIATDGGRICRPLIIVDAENKSRVKAHHLKKLLSNEWAF 642
Query: 608 --FMEIRCPDGGDGGRRN---------AFPATHEE-----IHPTGMLSVVANLTPYSDHN 651
F++ + D N TH+E I P +L VA L PY HN
Sbjct: 643 DDFLKHGLVEYLDVNEENDSLIALYEEDLKNTHQEFTHLEIEPFTVLGAVAGLIPYPHHN 702
Query: 652 QSPRNMYQCQMAKQTMGFSVQALKF-RADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGT 710
QSPRN YQC M KQ +G ++ +F R D LY + PQ P+V+T T D+ P G
Sbjct: 703 QSPRNTYQCAMGKQAIG-AIGYNQFRRIDTLLYLMVYPQQPMVKTKTIELIDYDKLPAGQ 761
Query: 711 NAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNK 770
NA VAV++Y+GYD+EDA++LNK+S+DRG Q+ + TI L N R ++
Sbjct: 762 NATVAVMSYSGYDIEDALVLNKASIDRGFGRCQVLRKNTISLKRYPNHTKDIVAGMRVDE 821
Query: 771 DAKSL--HSVIDSDGLPYVGQMIHPGEPYCSIY-------------DKTTNSWRTNSR-- 813
+ + + HS + +DGL VG + G+ Y + D+ S ++
Sbjct: 822 NGEPIFSHSSLGTDGLGEVGMQVENGQVYVNKCVPTNAGESVLGSPDQHVQSAESHRETP 881
Query: 814 ---KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPD 870
KG E ++D V + + ++ K + R TR P +GDKFSSRHGQKGVC +
Sbjct: 882 AYYKGPEPSYIDQVMMSVGDNDQALIK--VLLRQTRRPELGDKFSSRHGQKGVCGIIVQQ 939
Query: 871 IDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
D+PF+ G+ PD+I+NPH FPSRMT+ +LE ++ K
Sbjct: 940 EDLPFND-DGITPDIIMNPHGFPSRMTVGKMLELISGK 976
>gi|71013466|ref|XP_758593.1| hypothetical protein UM02446.1 [Ustilago maydis 521]
gi|46098251|gb|EAK83484.1| hypothetical protein UM02446.1 [Ustilago maydis 521]
Length = 1169
Score = 273 bits (697), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 265/1010 (26%), Positives = 415/1010 (41%), Gaps = 188/1010 (18%)
Query: 9 FEPLRELVRHHIESFDYMLDEGLSEMFD-------------------------------- 36
F ++ LV+ HI+S++Y +D L +
Sbjct: 56 FLQVKGLVKQHIDSYNYFVDHDLKNIIKANEKITSDIDPKFYLKYTDITVGEPRRYDGDA 115
Query: 37 --------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGA 88
CR I+Y+ + ++E Y G + R+ G+ PVML++ +C L
Sbjct: 116 LQRPITPHECRLRDITYSAHIFVNIE--YTRGGKIIRRKNVAIGRIPVMLRSNKCVLANK 173
Query: 89 DSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVV 148
++L + E + GGYF++ G E+V IL ++ S R E T K V
Sbjct: 174 SEKELAKMSECPLDPGGYFVVKGTEKV----ILVQEQL------SKNRIIVEADTKKGTV 223
Query: 149 IRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYL--------LPVGIVLKALVDTNDLE 200
V K Y L GK YL +P+ + KA+ D E
Sbjct: 224 SASVTSSTHERKSKSYVLTK---------HGKIYLKHNSLHEDIPIAVAFKAMGIQADRE 274
Query: 201 IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
I L +D+ +K E I L E L + TR Q L IG +
Sbjct: 275 IL-QLVAGHDDIHK------------ELFAINLEEAARLGIYTRKQALDFIGARAKASRK 321
Query: 261 GLQ-----SESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDS 315
L SE V TVI ++ V + K + M++++ + D+ D
Sbjct: 322 PLSMRRPLSEEALDVLATVIMAHVPVERLNFRPKAIYIASMVRRVLMAMQDEKKVDDRDY 381
Query: 316 LQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKK------FDFFNLANIKKV 369
+ N+ + L G L+++ ED +K ++ I+ KK FD FN +
Sbjct: 382 VGNKRLELAGQLLSLLF----EDLFKKFNSDLKMNIDKVLKKPNRTVEFDAFNQFHFN-- 435
Query: 370 MEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGAS 429
I + + TG + + +RAG T RL+F+ + + +
Sbjct: 436 -----GDYITSGFVRAISTGNWSLKRFK--MERAGITHVLSRLSFIAALGMMTRI--SSQ 486
Query: 430 FAGLRTTS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKM 488
F R S R L P WG LCP TP+GE CGL+ ++ T + + + R +
Sbjct: 487 FEKTRKVSGPRALQPSQWGMLCPSDTPEGEACGLVKNLALTTHITTDVEEEPIARIAFTL 546
Query: 489 RTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSA 548
+ +L G + P V L+G V+GV + ++ V RRL+
Sbjct: 547 GVEDIHLLTGAELYR----------PDSYVVYLNGNVLGV--TRFPQRFVLQFRRLR--R 592
Query: 549 ASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISL----PSEESQNIELIGPF 604
A + + +V + + +Y+ + + RP+ + P +++ +
Sbjct: 593 AGRVSE-----FVSVYTNHHHQTVYIASDGGRICRPLIIVDAFTGHPRVTESHMQQLKSG 647
Query: 605 EQVFME------IRCPDGGDGGRRNAFPATHE---------EIHPTGMLSVVANLTPYSD 649
+ F + I D + N HE EI P +L VA L PY
Sbjct: 648 ARRFDDFLHNGLIEYVDVNEENDANIAMYEHEIKPQYTTHLEIEPFTILGAVAGLIPYPH 707
Query: 650 HNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTG 709
HNQSPRN YQC M KQ G R D LY + PQ P+V++ T G D+ P G
Sbjct: 708 HNQSPRNTYQCAMGKQGQGAIGYNQLIRIDTLLYLMLYPQQPMVKSRTIELIGYDKLPAG 767
Query: 710 TNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQI----------YQTETIDLSDDGNKV 759
TN++VAV++Y+GYD+EDA++LNK+S+DRG Q Y T D D
Sbjct: 768 TNSMVAVMSYSGYDIEDALVLNKASLDRGFGRSQTMKKSSTVIRKYPNGTHDRLADAPVD 827
Query: 760 DRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPY------CSIYDKTTNSWRTNSR 813
D K +R + ++++DG+ VG+ + G+ Y + D ++ + +
Sbjct: 828 DTTGKRQKR-------YDILEADGIAGVGERVEQGDVYVNKQTPVNANDNSSAAIMIGAS 880
Query: 814 KGSESV---------------FVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRH 858
+ SV ++D V + +S KA I R TR P +GDKFSSRH
Sbjct: 881 NAAASVAYKSAPLSYKPPVSGYIDQVLITDTDSDQTLIKALI--RQTRRPELGDKFSSRH 938
Query: 859 GQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
GQKGVC + DMPF+ G+ PD+I+NPH FPSRMT+ ++E ++ K
Sbjct: 939 GQKGVCGLIVQQEDMPFTD-QGINPDIIMNPHGFPSRMTVGKMIELLSGK 987
>gi|348506052|ref|XP_003440574.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2
[Oreochromis niloticus]
Length = 1040
Score = 272 bits (696), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 253/936 (27%), Positives = 413/936 (44%), Gaps = 141/936 (15%)
Query: 32 SEMFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQ 91
S F CR ++Y+ + D+E Y ++R G+ P+ML++ C L G
Sbjct: 4 SSSFFRCRLRDMTYSAPITVDIE--YTRGSQRIIRNALPIGRMPIMLRSSNCVLTGKTPM 61
Query: 92 KLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRC 151
+ L E + GGYFI+ G E+V +++ +Q +S R R+G +V
Sbjct: 62 EFSKLNECPLDPGGYFIVKGQEKV---ILIQEQ---LSKNRIIVEQDRKGAVGASVTSST 115
Query: 152 -VRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYL--------LPVGIVLKALVDTNDLEIF 202
+K ++++ +K QG+ YL P+ I+ K + +D EI
Sbjct: 116 HEKKSRTNIIVK---------------QGRFYLRHNTLSEDAPIAIIFKGMGVESDQEIV 160
Query: 203 NHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQ-PVIDG 261
+ E+ + S S L E Q + T+ Q L+++G + + G
Sbjct: 161 QMIG--------TEESVMASFAPS------LEECQKAQIFTQTQALRYLGNKVRRQRMWG 206
Query: 262 LQSESYYAVAETVIRDYIFVHLNDNNDKFN----LLIFMLQKLFSLVDHTSVSDNPDSLQ 317
++ A ++ I H+ F L M++++ L + D+ D
Sbjct: 207 GPKKTKMEEARELLASLILTHVPVKEFNFRAKCIYLAVMVRRVI-LAQGDNKVDDRDYYG 265
Query: 318 NQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQ 377
N+ + L G L+++ ++ + + + KK I D+I + F ++ K M ++ Q
Sbjct: 266 NKRLELAGQLLSLLFEDLFKKFNAELKK-IADQIIPKQRAAQF----DVVKHMRQD---Q 317
Query: 378 IGTSIETMLKTGRLATQT-GLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
I + + TG + + +D R G T RL+++ + + + F R
Sbjct: 318 ITNGMVNAISTGNWSLKRFKMD---RQGVTQVLSRLSYISALGMMTRI--SSQFEKTRKV 372
Query: 437 S-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRV 495
S R L P WG LCP TP+GE CGL+ ++ + + + I+ + + +
Sbjct: 373 SGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIIKLAFNLGVEDVNL 432
Query: 496 LIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDD 555
L G + P+V V L+G ++GVI + +K++ R ++ A I +
Sbjct: 433 LCGEEL----------SYPSVFLVFLNGNILGVI--RDHQKLINTFRLMR--RAGFINE- 477
Query: 556 LEVGYVPLSLGGAYPGLYLFTSPPKFVRP--VRNISLPSEESQNIELIG----PFEQVFM 609
+V +S + +Y+ + + RP + +P ++++IE + FE F+
Sbjct: 478 ----FVSISTNLSDRCVYISSDGGRLCRPYIIVKKGVPMVKNKHIEDLSQGYRTFED-FL 532
Query: 610 EIRCPDGGDGGRRNAFP-----------ATHEEIHPTGMLSVVANLTPYSDHNQSPRNMY 658
+ D N TH EI P +L V A L PY HNQSPRN Y
Sbjct: 533 HEGLVEYLDVNEENDCQIALYEYMINKDTTHLEIEPFTLLGVCAGLIPYPHHNQSPRNTY 592
Query: 659 QCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLA 718
QC M KQ MG + R D +Y L PQ P+V+T T ++ P G NA VAV++
Sbjct: 593 QCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQRPMVKTKTIELIDFEKLPAGQNATVAVMS 652
Query: 719 YTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKV-DR--GQKLFRRNKDAKSL 775
Y+GYD+EDA++LNK+S+DRG +Y+ L N+ D+ G L +
Sbjct: 653 YSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLRRYTNQTFDKVMGPMLDAATRKPIWR 712
Query: 776 HSVIDSDGLPYVGQMI-----------------------HPGEPYCSIYDKTTNSWRTNS 812
HS++D+DG+ G+ + PG+P Y S+
Sbjct: 713 HSILDADGICSPGERVENKQVLVNKSMPTVTQTPLEGSTQPGQPQ---YRDVPISY---- 765
Query: 813 RKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDID 872
KGS +++ V + K I R TR P IGDKFSSRHGQKGVC + P D
Sbjct: 766 -KGSTDSYIEKVMISSNAEDAFLIK--ILLRQTRRPEIGDKFSSRHGQKGVCGLIVPQED 822
Query: 873 MPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
MPF TG+ PD+I+NPH +PSRMT+ L+E +A K
Sbjct: 823 MPFCD-TGICPDIIMNPHGYPSRMTVGKLIELLAGK 857
>gi|146414794|ref|XP_001483367.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Meyerozyma
guilliermondii ATCC 6260]
Length = 1156
Score = 271 bits (692), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 250/926 (26%), Positives = 410/926 (44%), Gaps = 121/926 (13%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR ++Y+ + DVE Y ++ + G+ P+MLK+ +C L G + ++ L
Sbjct: 115 CRLRDLTYSAPIYVDVE--YTRGRKIIMHKDLEIGRMPIMLKSNKCILDGINDHQMAKLD 172
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRC-VRKDQ 156
E + GGYFI+NG E+V +++ +Q ++ + D ++G +V RK +
Sbjct: 173 ECPIDPGGYFIVNGTEKV---ILIQEQLSKNRIIVEA--DEKKGIVQASVTSSTHERKSK 227
Query: 157 SSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKE 216
+ V K N + L G++ +P+ I+LKA T+DLEI L C + +Y+
Sbjct: 228 TYVITK-----NEKIYLKHNSIGED--VPIVIILKAAGITSDLEIL-QLVCGSNPQYQ-- 277
Query: 217 KGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQ-------PVIDGLQSESYYA 269
+ + E L + T+ Q L ++G+ + P + LQ E A
Sbjct: 278 ----------DLFAVNFEEAARLEVFTQQQALNYVGKRVKTVRRAGAPKLSQLQ-EGIEA 326
Query: 270 VAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
+A T+I +I V +K + M +++ + + + D+ D + N+ + L G L++
Sbjct: 327 IATTIIA-HITVDDLQFREKALYIAMMARRVLMTMHNPKMVDDRDYVGNKRLELAGQLMS 385
Query: 330 IYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTG 389
+ ++ + + K I ++ + +F L +I S I + + TG
Sbjct: 386 LLFEDLFKKFNSDFKANIDKILKKPSRALEFDALLSINI-----HSNNITMGMNRAISTG 440
Query: 390 RLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLLPESWGF 448
+ + +RAG T RL+++ + + + F R S R L P +G
Sbjct: 441 NWSLKRF--KMERAGVTHVLSRLSYISALGMMTRI--SSQFEKSRKVSGPRALQPSQFGM 496
Query: 449 LCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIR--DFSKMRTSILRVLIGVGMIPSLP 506
LC TP+GE CGL+ ++ + + D IR F+ IL V
Sbjct: 497 LCTSDTPEGEACGLVKNLALMTHITT-DDEEEPIRLVCFALGCEDILEV--------DSA 547
Query: 507 KLVKSGPPAVLSVLLDGRVVGV--IPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLS 564
L G + L+G ++G P+ + A R KVS I + V ++
Sbjct: 548 TLHADGN---FGIYLNGTIIGTTRFPAQFVGNFRALRRSGKVSPFISIHTNTHQNAVQIA 604
Query: 565 LGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGG---- 620
G + RP+ I + S+ N++ + + + E D G
Sbjct: 605 TDGG-----------RVCRPL--IIVDSKNKANVKAVHLKKLMAGEWVFEDFIKHGLVEY 651
Query: 621 -----RRNAFPATHE------------EIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMA 663
++F A +E EI P +L VA L PY HNQSPRN YQC M
Sbjct: 652 LDVNEENDSFIALYERDLEANQNITHLEIEPFTVLGAVAGLIPYPHHNQSPRNTYQCAMG 711
Query: 664 KQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYD 723
KQ +G R D LY + PQ P+V+T T D+ P G NA VAV++Y+GYD
Sbjct: 712 KQAIGAIAYNQFRRIDTLLYLMVYPQQPMVKTKTIELIDYDKLPAGQNATVAVMSYSGYD 771
Query: 724 MEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSL--HSVIDS 781
+EDA++LNK+S+DRG Q+ + T++L N R ++ + + H+ +
Sbjct: 772 IEDALVLNKASIDRGFGRCQVLRKNTVNLKRYPNHTKDVVSGMRVDEQGEPIFPHASLGP 831
Query: 782 DGLPYVGQMIHPGEPY---CSIYDKTTNSWRTNS----------------RKGSESVFVD 822
DGL VG + G+ Y C + + + N +G E ++D
Sbjct: 832 DGLGEVGMKVENGQVYVNKCVPTNASESVLGANEPHHQQNVESHRETPAYYRGPEPSYID 891
Query: 823 YVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMR 882
V M S N + R TR P +GDKFSSRHGQKGVC + D+PF+ G+
Sbjct: 892 QVM--MSVSDNDQTLIKVLLRQTRRPELGDKFSSRHGQKGVCGIIVQQEDLPFND-DGIV 948
Query: 883 PDLIINPHAFPSRMTIAMLLESVAAK 908
PD+I+NPH FPSRMT+ ++E ++ K
Sbjct: 949 PDIIMNPHGFPSRMTVGKMIELISGK 974
>gi|91082339|ref|XP_966549.1| PREDICTED: similar to RNA polymerase III 128kD subunit CG8344-PA
[Tribolium castaneum]
gi|270007487|gb|EFA03935.1| hypothetical protein TcasGA2_TC014075 [Tribolium castaneum]
Length = 1122
Score = 271 bits (692), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 266/989 (26%), Positives = 419/989 (42%), Gaps = 164/989 (16%)
Query: 9 FEPLRELVRHHIESFDYMLDEGLSEMFD-------------------------------- 36
F ++ LV+ HI+SF+Y ++ + ++ +
Sbjct: 26 FLKVKGLVKQHIDSFNYFINVDIKKIVEANNKLVCDADPLFYVKYTNVYVGRPDVDEGFN 85
Query: 37 --------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGA 88
CR ++Y+ + D+E Y V + G+ P+ML++ C L
Sbjct: 86 ISKPTTPHECRLRDMTYSAPISVDIE--YTRGTQRVSKAGLMIGRMPIMLRSSNCVLTNK 143
Query: 89 DSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVV 148
+L + E + GGYF++ G E+V +++ +Q +S R + + G
Sbjct: 144 SEYELAKMNECPLDPGGYFVVKGQEKV---ILIQEQ---LSKNRMIVEESKFGVQCAVTS 197
Query: 149 IRCVRKDQSSVTLKL--YYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLT 206
+K +++V K YYL + S+ L+PV I+ KAL T+D EI
Sbjct: 198 STHEKKSRTNVVCKANKYYLGHNSL---------TDLVPVSIIFKALDVTSDKEICE--- 245
Query: 207 CCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHF---QPVIDGLQ 263
+G +S ++ L E L + T+L L+HIG + V +
Sbjct: 246 ------------LIGVEDIS-KLTPTLEECHTLKIYTQLGALKHIGSKLVAKRYVTSASK 292
Query: 264 SESYYAVAETVIRDYIFVHLNDNNDKFNL----LIFMLQKLFSLVDHTSVSDNPDSLQNQ 319
++ A V+ + H+ N F + L M++++ D+ D N+
Sbjct: 293 MKTPVDEARDVLATTVLAHVPVENYNFRMKAIYLGVMVKRVIEAQSDKKFMDDKDYYGNK 352
Query: 320 EILLPGHLITIYLKEKLEDWLRKGKKLIQDEIEN-NGKKFDFFNLANIKKVMEKNPSKQI 378
+ L G L+++ ++ + + + K + + I +FD V++ S I
Sbjct: 353 RLELAGSLLSLMFEDVFKRFNWELKSIAEKTIPKIRATQFD---------VVKYMRSDLI 403
Query: 379 GTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS- 437
+ + TG + +R G T RL+++ + V+ + F R S
Sbjct: 404 TNCLVYAISTGNWTIKRFR--MERLGVTQVLSRLSYISALGMMTRVN--SQFEKTRKVSG 459
Query: 438 VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLI 497
R L P WG LCP TP+GE CGL+ ++ + + D IR + ++ + +
Sbjct: 460 PRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDVDEYPLIRLANN--AGVVDINM 517
Query: 498 GVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLE 557
GM P V L+G ++G I +K++ R L+ S L
Sbjct: 518 SSGM--------SIHSPETFFVFLNGNILGTI--RNYKKLIHTFRMLRRSG-------LI 560
Query: 558 VGYVPLSLGGAYPGLYLFTSPPKFVRPV----RNISLPSEESQNIEL---IGPFEQVFME 610
GYV + + +Y+ + + RP R L ++ + IEL I FE F+
Sbjct: 561 SGYVSIYPNFLHRCIYISSDGGRLCRPYIIVERGRPLVTQ-NHIIELEKGIRSFED-FLH 618
Query: 611 IRCPDGGDGGRRN-AFPA----------THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQ 659
+ D N +F A TH EI +L V A L PY HNQSPRN YQ
Sbjct: 619 DGLIEFLDVNEENDSFIACYEKDITDLTTHLEIATFTLLGVCAGLVPYPHHNQSPRNTYQ 678
Query: 660 CQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAY 719
C M KQ MG K R D LY L PQ P+V+T + D+ P G NA +AV++Y
Sbjct: 679 CAMGKQAMGTIGYNQKNRMDTLLYSLVYPQAPMVKTKSIELTNFDKLPAGQNATIAVMSY 738
Query: 720 TGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKV-DRGQ-KLFRRNKDAKSL-H 776
+GYD+EDA+I+NK+S+DRG +Y+ + N+ DR Q L +A H
Sbjct: 739 SGYDIEDALIINKASIDRGFGRCLVYKNSKCVMKRYANQTFDRIQGPLIDTTTNAPMWKH 798
Query: 777 SVIDSDGLPYVGQMIH----------------PGEPYCSI-YDKTTNSWRTNSRKGSESV 819
+V+D DG+ G+ + PG S+ Y T +R N E V
Sbjct: 799 AVLDMDGIVAPGESVDNKQVLVNKSVPTVSAVPGSQTTSVEYKDTPICYRNNEPSYIEKV 858
Query: 820 FVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVT 879
V D K I R TR P IGDKFSSRHGQKGV + DMPF+
Sbjct: 859 LVSTNEEDTTIIK-------ILLRQTRRPEIGDKFSSRHGQKGVVGLVVEQEDMPFNEY- 910
Query: 880 GMRPDLIINPHAFPSRMTIAMLLESVAAK 908
G+ PD+I+NPH +PSRMT+ L+E +A K
Sbjct: 911 GICPDIIMNPHGYPSRMTVGKLIELLAGK 939
>gi|195153847|ref|XP_002017835.1| GL17093 [Drosophila persimilis]
gi|194113631|gb|EDW35674.1| GL17093 [Drosophila persimilis]
Length = 1137
Score = 271 bits (692), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 258/927 (27%), Positives = 409/927 (44%), Gaps = 136/927 (14%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR +Y+ + D+E Y + R G+ P+ML+ C L G +L L
Sbjct: 110 CRLRDTTYSSPITVDIE--YTRGTQRIKRNNLLIGRMPLMLRCSNCVLTGKSEFELSKLN 167
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRC----VR 153
E + GGYF++ G E+V +++ +Q M+ F V++C
Sbjct: 168 ECPLDPGGYFVVRGQEKV---ILIQEQLSWNKMLTEDFNG----------VVQCQVTSST 214
Query: 154 KDQSSVTLKL-----YYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCC 208
++ S TL L YYL + S+ +P+ ++ KAL +D EI H+
Sbjct: 215 HEKKSRTLVLSKHGRYYLKHNSMTDD---------IPIVVIFKALGIVSDQEIMAHIGI- 264
Query: 209 YDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYY 268
D K + GA L E +L + T+ + L ++G V+ QS +
Sbjct: 265 -DTKSQNRFGAS------------LLEAFNLKVFTQQRALDYMGSKL--VVKRFQSATTK 309
Query: 269 AVAET---VIRDYIFVHLNDNNDKFNL----LIFMLQKLFSLVDHTSVSDNPDSLQNQEI 321
AE ++ I H+ +N F + + M++++ S ++ D+ D N+ +
Sbjct: 310 TPAEEARELLLTTILAHVPVDNFNFQMKAIYVSMMVRRVMSAELDKTLFDDRDYYGNKRL 369
Query: 322 LLPGHLITIYLKE--KLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIG 379
L G LI++ ++ K +W K+I D+ K F V++ + QI
Sbjct: 370 ELAGSLISLMFEDLFKRMNW---ELKMIADKNIPKVKAAQF-------DVVKHMRAAQIT 419
Query: 380 TSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-V 438
+E+ + +G + +RAG T RL+++ + V+ + F R S
Sbjct: 420 AGLESAISSGNWTIKRFK--MERAGVTQVLSRLSYISALGMMTRVN--SQFEKTRKVSGP 475
Query: 439 RKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIG 498
R L P WG LCP TP+GE CGL+ ++ + + + R IL G
Sbjct: 476 RSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTEVEERP---------VMILAFNAG 526
Query: 499 VGMIPSLPKLVKSGP---PAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDD 555
V I + V P P V V ++G V+G+ + + +V +LR ++
Sbjct: 527 VEDI----REVSGNPINNPNVFLVFINGNVLGLTLNHK--HLVRNLRYMRRKG------- 573
Query: 556 LEVG-YVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIEL------IGPFEQVF 608
+G +V + +Y+ T + RP + + L + F+
Sbjct: 574 -RMGSFVSVHTSYTQRCIYIHTDGGRLCRPYIIVEKRRPRVKQFHLDELERGVRKFDDFL 632
Query: 609 MEIRCPDGGDGGRRNAFPA----------THEEIHPTGMLSVVANLTPYSDHNQSPRNMY 658
++ ++F A TH EI P +L V A L PY HNQSPRN Y
Sbjct: 633 LDGLIEYLDVNEENDSFIAWNEEHIEEGTTHLEIEPFTLLGVCAGLVPYPHHNQSPRNTY 692
Query: 659 QCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLA 718
QC M KQ MG K R D +Y+L PQ P+V+T T D+ P G NA VAV++
Sbjct: 693 QCAMGKQAMGMIGYNQKNRIDSLMYNLVYPQAPMVKTKTIELTNFDKLPAGQNATVAVMS 752
Query: 719 YTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKV-DRGQKLFRRNKDAKSL-- 775
++GYD+EDA+ILNK+S+DRG +Y+ + N+ DR + K +
Sbjct: 753 FSGYDIEDALILNKASIDRGYGRCLVYKNSKCTVKRYANQTFDRIMGPVKDALTNKVIFK 812
Query: 776 HSVIDSDGLPYVGQ-------MIHPGEPYCS----IYDKTTNSWRTN---SRKGSESVFV 821
H V+D+DG+ G+ MI+ P + + ++T T S KG E +V
Sbjct: 813 HDVLDTDGIVAPGEQILNKQIMINKEMPAVTSLNPLEGQSTQVPYTAVPISYKGPEPSYV 872
Query: 822 DYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGM 881
+ V V + ++ K I R TR P IGDKFSSRHGQKGV + DMP++ +G+
Sbjct: 873 ERVMVSANSEEDFLIK--ILLRQTRIPEIGDKFSSRHGQKGVTGLIVDQEDMPYND-SGI 929
Query: 882 RPDLIINPHAFPSRMTIAMLLESVAAK 908
PD+I+NPH FPSRMT+ LE + K
Sbjct: 930 CPDMIMNPHGFPSRMTVGKTLELLGGK 956
>gi|345498326|ref|XP_001607116.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like
[Nasonia vitripennis]
Length = 1135
Score = 271 bits (692), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 246/918 (26%), Positives = 395/918 (43%), Gaps = 118/918 (12%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR ++Y+ + D+E Y+ P++R G+ P+ML++ C L + +L +
Sbjct: 106 CRLRDLNYSAPITVDIE--YMRGHQPIIRNNLLIGRMPIMLRSSNCVLSEKSNFELAKMN 163
Query: 98 EEAAEMGGYFILNGLERV-------FRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
E + GGYFI+NG E+V R+ I+ +++ +V S +E T V+ R
Sbjct: 164 ECPHDPGGYFIINGQEKVILIQEQMLRNRIILEEDNKNCIVASCNSATQERKTKTNVIGR 223
Query: 151 CVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYD 210
+ YYL + + +PV I+ KA+ D EI + +
Sbjct: 224 AGK----------YYLRHNIFQDD---------IPVVIIFKAMGIVCDQEIVQLIGT--E 262
Query: 211 EKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIG-----EHFQPVIDGLQSE 265
E + K+ GA L E L++ + Q L+++G + F V + E
Sbjct: 263 ENFMKKIGAS------------LEECHALNIVAQNQALKYLGNKRKQKRFTVVKSSITDE 310
Query: 266 SYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPG 325
+A ++ + N K L M++K+ + D+ D N+ + L G
Sbjct: 311 MKDVLASNILSHVPVIDFN-FKLKATYLALMVRKVMIAQTDGKLVDDRDYYGNKRLELAG 369
Query: 326 HLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETM 385
L+ + ED ++ ++ + N K +K + + + + +I +
Sbjct: 370 SLLALMF----EDLFKRFNWDLKTIADKNIPKIKAAQFDIVKHMRHDSITNGLAVAISSG 425
Query: 386 LKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLLPE 444
T + +R G T RL+++ + V+ + F R S R L P
Sbjct: 426 NWTIKRFKM------ERHGVTQVLSRLSYISALGMMTRVN--SQFEKTRKVSGPRSLQPS 477
Query: 445 SWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPS 504
WG LCP TP+GE CGL+ ++ + + + +R + + +L G +
Sbjct: 478 QWGMLCPSDTPEGEGCGLVKNLALMTHITTEIEEEPIMRLAFNLGVENVNILGGEEI--- 534
Query: 505 LPKLVKSGPPAVLSVLLDGRVVGVIPSS-EIEKVVAHLRR--LKVSAASVIPDDLEVGYV 561
V V L+G ++G++ + + V LRR L S+ P
Sbjct: 535 -------NNKDVYMVFLNGNILGIVKNYYRLVTVFRMLRRKGLVNQFVSIYPQHQHRCVQ 587
Query: 562 PLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELI---GPFEQV----------- 607
S GG Y+ + + +I L + ++ E G E +
Sbjct: 588 ISSDGGRLCRPYIIVEHCQPLVKAEHIKLLEQGVRSFEDFLHDGTIEYLDVNEENDSFIA 647
Query: 608 FMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTM 667
F E +G TH EI P +L V A L PY HNQSPRN YQC M KQ M
Sbjct: 648 FSESHIKEG----------ITHLEIEPFTLLGVCAGLVPYPHHNQSPRNTYQCAMGKQAM 697
Query: 668 GFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDA 727
G + R D +Y+L P P+V+T T D+ P G NAIVAV++Y+GYD+EDA
Sbjct: 698 GTIAYNQRNRIDTLMYNLVYPHAPMVKTKTIELINFDKLPAGQNAIVAVMSYSGYDIEDA 757
Query: 728 MILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKS-----LHSVIDSD 782
+ILNK+S+DRG +Y+ L N+ ++ + DA + H +ID +
Sbjct: 758 LILNKASIDRGYGRCLVYKNAKCVLKKYANQT--CDRIMPASVDATTKKPIWQHDIIDGE 815
Query: 783 GLPYVGQ-------MIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKN---SK 832
G+ G+ M++ P + TT S K + V+ + V ++ S
Sbjct: 816 GIAAPGEMVSNKKVMVNKSTPSANTGPVTTGSQAQTEYKNANLVYKNPVPAYIEKVMISS 875
Query: 833 NLPQKANIR--FRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPH 890
N I+ R TR P IGDKFSSRHGQKGV + DMPF+ +G+ PD+I+NPH
Sbjct: 876 NAEDAYLIKLLLRQTRRPEIGDKFSSRHGQKGVTGLIVEQEDMPFND-SGICPDMIMNPH 934
Query: 891 AFPSRMTIAMLLESVAAK 908
FPSRMT+ L+E +A K
Sbjct: 935 GFPSRMTVGKLIELLAGK 952
>gi|190347676|gb|EDK39998.2| DNA-directed RNA polymerase III 130 kDa polypeptide [Meyerozyma
guilliermondii ATCC 6260]
Length = 1156
Score = 270 bits (691), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 250/926 (26%), Positives = 410/926 (44%), Gaps = 121/926 (13%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR ++Y+ + DVE Y ++ + G+ P+MLK+ +C L G + ++ L
Sbjct: 115 CRLRDLTYSAPIYVDVE--YTRGRKIIMHKDLEIGRMPIMLKSNKCILDGINDHQMAKLD 172
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRC-VRKDQ 156
E + GGYFI+NG E+V +++ +Q ++ + D ++G +V RK +
Sbjct: 173 ECPIDPGGYFIVNGTEKV---ILIQEQLSKNRIIVEA--DEKKGIVQASVTSSTHERKSK 227
Query: 157 SSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKE 216
+ V K N + L G++ +P+ I+LKA T+DLEI L C + +Y+
Sbjct: 228 TYVITK-----NEKIYLKHNSIGED--VPIVIILKAAGITSDLEIL-QLVCGSNPQYQ-- 277
Query: 217 KGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQ-------PVIDGLQSESYYA 269
+ + E L + T+ Q L ++G+ + P + LQ E A
Sbjct: 278 ----------DLFAVNFEEAARLEVFTQQQALNYVGKRVKTVRRAGAPKLSQLQ-EGIEA 326
Query: 270 VAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
+A T+I +I V +K + M +++ + + + D+ D + N+ + L G L++
Sbjct: 327 IATTIIA-HITVDDLQFREKALYIAMMARRVLMTMHNPKMVDDRDYVGNKRLELAGQLMS 385
Query: 330 IYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTG 389
+ ++ + + K I ++ + +F L +I S I + + TG
Sbjct: 386 LLFEDLFKKFNSDFKANIDKILKKPSRASEFDALLSINI-----HSNNITMGMNRAISTG 440
Query: 390 RLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLLPESWGF 448
+ + +RAG T RL+++ + + + F R S R L P +G
Sbjct: 441 NWSLKRF--KMERAGVTHVLSRLSYISALGMMTRI--SSQFEKSRKVSGPRALQPSQFGM 496
Query: 449 LCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRD--FSKMRTSILRVLIGVGMIPSLP 506
LC TP+GE CGL+ ++ + + D IR F+ IL V
Sbjct: 497 LCTSDTPEGEACGLVKNLALMTHITT-DDEEEPIRSVCFALGCEDILEV--------DSA 547
Query: 507 KLVKSGPPAVLSVLLDGRVVGV--IPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLS 564
L G + L+G ++G P+ + A R KVS I + V ++
Sbjct: 548 TLHADGN---FGIYLNGTIIGTTRFPAQFVGNFRALRRSGKVSPFISIHTNTHQNAVQIA 604
Query: 565 LGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGG---- 620
G + RP+ I + S+ N++ + + + E D G
Sbjct: 605 TDGG-----------RVCRPL--IIVDSKNKANVKAVHLKKLMAGEWVFEDFIKHGLVEY 651
Query: 621 -----RRNAFPATHE------------EIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMA 663
++F A +E EI P +L VA L PY HNQSPRN YQC M
Sbjct: 652 LDVNEENDSFIALYERDLEANQNITHLEIEPFTVLGAVAGLIPYPHHNQSPRNTYQCAMG 711
Query: 664 KQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYD 723
KQ +G R D LY + PQ P+V+T T D+ P G NA VAV++Y+GYD
Sbjct: 712 KQAIGAIAYNQFRRIDTLLYLMVYPQQPMVKTKTIELIDYDKLPAGQNATVAVMSYSGYD 771
Query: 724 MEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSL--HSVIDS 781
+EDA++LNK+S+DRG Q+ + T++L N R ++ + + H+ +
Sbjct: 772 IEDALVLNKASIDRGFGRCQVLRKNTVNLKRYPNHTKDVVSGMRVDEQGEPIFPHASLGP 831
Query: 782 DGLPYVGQMIHPGEPY---CSIYDKTTNSWRTNS----------------RKGSESVFVD 822
DGL VG + G+ Y C + + + N +G E ++D
Sbjct: 832 DGLGEVGMKVENGQVYVNKCVPTNASESVLGANEPHHQQNVESHRETPAYYRGPEPSYID 891
Query: 823 YVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMR 882
V M S N + R TR P +GDKFSSRHGQKGVC + D+PF+ G+
Sbjct: 892 QVM--MSVSDNDQTLIKVLLRQTRRPELGDKFSSRHGQKGVCGIIVQQEDLPFND-DGIV 948
Query: 883 PDLIINPHAFPSRMTIAMLLESVAAK 908
PD+I+NPH FPSRMT+ ++E ++ K
Sbjct: 949 PDIIMNPHGFPSRMTVGKMIELISGK 974
>gi|125808948|ref|XP_001360931.1| GA21006 [Drosophila pseudoobscura pseudoobscura]
gi|54636103|gb|EAL25506.1| GA21006 [Drosophila pseudoobscura pseudoobscura]
Length = 1137
Score = 270 bits (691), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 260/928 (28%), Positives = 409/928 (44%), Gaps = 138/928 (14%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR +Y+ + D+E Y + R G+ P+ML+ C L G +L L
Sbjct: 110 CRLRDTTYSSPITVDIE--YTRGTQRIKRNNLLIGRMPLMLRCSNCVLTGKSEFELSKLN 167
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRC----VR 153
E + GGYF++ G E+V +++ +Q M+ F V++C
Sbjct: 168 ECPLDPGGYFVVRGQEKV---ILIQEQLSWNKMLTEDFNG----------VVQCQVTSST 214
Query: 154 KDQSSVTLKL-----YYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCC 208
++ S TL L YYL + S+ +P+ ++ KAL +D EI H+
Sbjct: 215 HEKKSRTLVLSKHGRYYLKHNSMTDD---------IPIVVIFKALGIVSDQEIMAHIGI- 264
Query: 209 YDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYY 268
D K + GA L E +L + T+ + L ++G V+ QS +
Sbjct: 265 -DTKSQNRFGAS------------LLEAFNLKVFTQQRALDYMGSKL--VVKRFQSATTK 309
Query: 269 AVAETVIRDY----IFVHLNDNNDKFNL----LIFMLQKLFSLVDHTSVSDNPDSLQNQE 320
AE RD I H+ +N F + + M++++ S ++ D+ D N+
Sbjct: 310 TPAEEA-RDLLLTTILAHVPVDNFNFQMKAIYVSMMVRRVMSAELDKTLFDDRDYYGNKR 368
Query: 321 ILLPGHLITIYLKE--KLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQI 378
+ L G LI++ ++ K +W K+I D+ K F V++ + QI
Sbjct: 369 LELAGSLISLMFEDLFKRMNW---ELKMIADKNIPKVKAAQF-------DVVKHMRAAQI 418
Query: 379 GTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS- 437
+E+ + +G + +RAG T RL+++ + V+ + F R S
Sbjct: 419 TAGLESAISSGNWTIKRFK--MERAGVTQVLSRLSYISALGMMTRVN--SQFEKTRKVSG 474
Query: 438 VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLI 497
R L P WG LCP TP+GE CGL+ ++ + + + R IL
Sbjct: 475 PRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTEVEERP---------VMILAFNA 525
Query: 498 GVGMIPSLPKLVKSGP---PAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPD 554
GV I + V P P V V ++G V+G+ + + +V +LR ++
Sbjct: 526 GVEDI----REVSGNPINNPNVFLVFINGNVLGLTLNHK--HLVRNLRYMRRKG------ 573
Query: 555 DLEVG-YVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIEL------IGPFEQV 607
+G +V + +Y+ T + RP + + L + F+
Sbjct: 574 --RMGSFVSVHTSYTQRCIYIHTDGGRLCRPYIIVEKRRPRVKQFHLDELERGVRKFDDF 631
Query: 608 FMEIRCPDGGDGGRRNAFPA----------THEEIHPTGMLSVVANLTPYSDHNQSPRNM 657
++ ++F A TH EI P +L V A L PY HNQSPRN
Sbjct: 632 LLDGLIEYLDVNEENDSFIAWNEEHIEEGTTHLEIEPFTLLGVCAGLVPYPHHNQSPRNT 691
Query: 658 YQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVL 717
YQC M KQ MG K R D +Y+L PQ P+V+T T D+ P G NA VAV+
Sbjct: 692 YQCAMGKQAMGMIGYNQKNRIDSLMYNLVYPQAPMVKTKTIELTNFDKLPAGQNATVAVM 751
Query: 718 AYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKV-DRGQKLFRRNKDAKSL- 775
+++GYD+EDA+ILNK+S+DRG +Y+ + N+ DR + K +
Sbjct: 752 SFSGYDIEDALILNKASIDRGYGRCLVYKNSKCTVKRYANQTFDRIMGPVKDALTNKVIF 811
Query: 776 -HSVIDSDGLPYVGQ-------MIHPGEPYCS----IYDKTTNSWRTN---SRKGSESVF 820
H V+D+DG+ G+ MI+ P + + ++T T S KG E +
Sbjct: 812 KHDVLDTDGIVAPGEQILNKQIMINKEMPAVTSLNPLEGQSTQVPYTAVPISYKGPEPSY 871
Query: 821 VDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTG 880
V+ V V + ++ K I R TR P IGDKFSSRHGQKGV + DMP++ +G
Sbjct: 872 VERVMVSANSEEDFLIK--ILLRQTRIPEIGDKFSSRHGQKGVTGLIVDQEDMPYND-SG 928
Query: 881 MRPDLIINPHAFPSRMTIAMLLESVAAK 908
+ PD+I+NPH FPSRMT+ LE + K
Sbjct: 929 ICPDMIMNPHGFPSRMTVGKTLELLGGK 956
>gi|388858433|emb|CCF48027.1| probable DNA-directed RNA polymerase III, 130 KD subunit [Ustilago
hordei]
Length = 1169
Score = 270 bits (691), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 264/1001 (26%), Positives = 421/1001 (42%), Gaps = 170/1001 (16%)
Query: 9 FEPLRELVRHHIESFDYMLDEGLSEMF--------------------------------- 35
F ++ LV+ HIES++Y +D L +
Sbjct: 56 FLQVKGLVKQHIESYNYFVDHDLKNIIKANEKITSDIDPKFYLKYTDITVGEPRRYDGDA 115
Query: 36 -------DHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGA 88
CR I+Y+ + ++E Y G + R+ G+ PVML++ +C L
Sbjct: 116 LQRPITPQECRLRDITYSAHIFVNIE--YTRGGKIIRRKNVAIGRIPVMLRSNKCVLSNK 173
Query: 89 DSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVV 148
++L + E + GGYF++ G E+V IL ++ + + ++ +
Sbjct: 174 SEKELAKMSECPLDPGGYFVVKGTEKV----ILVQEQLSKNRIIVEADTKKGSVSASVTS 229
Query: 149 IRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCC 208
RK +S V K +G + L ++ +P+ + KA+ D EI L
Sbjct: 230 STHERKSKSYVLTK-----HGKIFLKHNSLHED--IPIAVAFKAMGIQADREIL-QLVVG 281
Query: 209 YDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQ----- 263
+D+ YK E I L E L + TR Q L +IG + L
Sbjct: 282 HDDIYK------------ELFAINLEEAARLGIYTRKQALDYIGARAKASRKPLSMRRPL 329
Query: 264 SESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILL 323
SE V TVI ++ V + K + M++++ + D+ D + N+ + L
Sbjct: 330 SEEALDVLATVIMAHVPVERLNFRPKAIYIASMVRRVLVAMQDEKKVDDRDYVGNKRLEL 389
Query: 324 PGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKK------FDFFNLANIKKVMEKNPSKQ 377
G L+ + ED +K ++ I+ KK FD FN +
Sbjct: 390 AGQLLALLF----EDLFKKFNSDLKINIDKVLKKPNRTVEFDAFNQFHFN-------GDY 438
Query: 378 IGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS 437
I + TG + + +RAG T RL+++ + + + F R S
Sbjct: 439 ITAGFVRAISTGNWSLKRFK--MERAGITHVLSRLSYIAALGMMTRI--SSQFEKTRKVS 494
Query: 438 -VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
R L P WG LCP TP+GE CGL+ ++ T + + D + + L
Sbjct: 495 GPRALQPSQWGMLCPSDTPEGEACGLVKNLALTTHITT---------DVEEEPIAKLAFT 545
Query: 497 IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDL 556
+GV + L P + + V L+G V+GV + ++ V RRL+ A I +
Sbjct: 546 LGVEDVHLLTGAELYRPDSYI-VYLNGNVLGV--TRFPQRFVMQFRRLR--RAGHISE-- 598
Query: 557 EVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC--- 613
+V + + +Y+ + + RP+ I + Q +Q+ IRC
Sbjct: 599 ---FVSIYTNSHHQTVYIASDGGRICRPL--IIVDPVTGQPRVTDSHIQQLKAGIRCFND 653
Query: 614 ------------PDGGDGG----RRNAFP--ATHEEIHPTGMLSVVANLTPYSDHNQSPR 655
+ D R+ P TH EI P +L VA L PY HNQSPR
Sbjct: 654 FLHNGLLEYLDVNEENDSNIALYERDIKPRYTTHLEIEPFTILGAVAGLIPYPHHNQSPR 713
Query: 656 NMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVA 715
YQC M KQ + R D LY + PQ P+V+T T G D+ P G NA+VA
Sbjct: 714 LTYQCAMGKQAVSAIAYNQFLRIDTLLYLMVYPQQPMVKTRTIDLIGYDKLPAGQNAMVA 773
Query: 716 VLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKV-DR------GQKLFRR 768
V++++GYD+EDA++LNK+S+DRG Q + + L N DR + +R
Sbjct: 774 VMSFSGYDIEDALLLNKASLDRGFGRCQTMKKSSTILRKYPNGTHDRLADAPVDESTGKR 833
Query: 769 NKDAKSLHSVIDSDGLPYVGQMIHPGEPY------CSIYDKTTNSWRTNSRKGSESV--- 819
K + ++++DG+ VG+ + G+ + + D ++ + + + SV
Sbjct: 834 QKR----YDILEADGIAGVGERVEQGDVFVNKQTPVNANDNSSAAIMIGASNAAASVAYK 889
Query: 820 ------------FVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQL 867
+VD V + +S KA I R TR P +GDKFSSRHGQKGVC +
Sbjct: 890 SAPLSYKPPVSGYVDQVLITDTDSDQTLIKALI--RQTRRPELGDKFSSRHGQKGVCGLI 947
Query: 868 WPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
DMPFS G+ PD+I+NPH FPSRMT+ ++E ++ K
Sbjct: 948 VNQEDMPFSD-QGINPDIIMNPHGFPSRMTVGKMIELLSGK 987
>gi|390596427|gb|EIN05829.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Punctularia strigosozonata HHB-11173 SS5]
Length = 1143
Score = 270 bits (690), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 263/993 (26%), Positives = 426/993 (42%), Gaps = 164/993 (16%)
Query: 9 FEPLRELVRHHIESFDYMLDEGLSEMFD-------------------------------- 36
F ++ LV+ HI+SF+Y +D + +
Sbjct: 41 FLKVKGLVKQHIDSFNYFVDVDIKNILKANNKVTSDVDPRFWLKYTDIHVGFPDRTDADA 100
Query: 37 --------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGA 88
CR +Y+ ++ V QY S V R + G+ P+ML++ +C L G
Sbjct: 101 IDKSVTPHECRLRDTTYSAPIL--VTIQYTRGKSVVRRPNVSIGRIPIMLRSNKCVLTGR 158
Query: 89 DSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVV 148
+ +L + E + GGYF++ G E+V IL ++ + + ++ V
Sbjct: 159 NEAQLARMLECPLDPGGYFVVKGTEKV----ILVQEQLSKNRIIVETDPVKD-----VVQ 209
Query: 149 IRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYL--------LPVGIVLKALVDTNDLE 200
C + K Y +GK YL +P+ I LKAL D E
Sbjct: 210 ASCTSSTHGGLKSKTYVATK---------KGKIYLRHNSIHEDVPIVIALKALGFQADKE 260
Query: 201 IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQP--V 258
I LT E YK + SP + E K L + TR Q L++IG +
Sbjct: 261 IL-LLTAGNSEVYK----SAFSPNLEEAAK--------LGVFTRHQALEYIGSRVKVNRR 307
Query: 259 IDGLQSESYYAVAE---TVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDS 315
+ G + ++ E T++ ++ V+ D K + M +++ + + D+ D
Sbjct: 308 VIGPRRPAWEEAMEALATIVLAHVPVNGLDFRPKAIFVATMTRRVLMAMADEKMVDDRDY 367
Query: 316 LQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPS 375
+ N+ + L G L+ + ++ + + K I D++ + + F+ N + M
Sbjct: 368 VGNKRLELAGQLLALLFEDLFKTFNSNLKSAI-DKVLKKPSRTNEFDAWNTMQFM----G 422
Query: 376 KQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRT 435
I + + TG + + +RAG T RL+F+ + + + F R
Sbjct: 423 DHITSGFVRAISTGNWSLKRFK--MERAGVTHVLSRLSFISALGMMTRI--SSQFEKTRK 478
Query: 436 TS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILR 494
S R L P WG LCP TP+GE CGL+ ++ + + + IR +
Sbjct: 479 VSGPRALQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDVEEEPIIR---------IA 529
Query: 495 VLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPD 554
L+GV I L + P V ++G ++G+ + + V++ R+L+ +
Sbjct: 530 YLLGVEDI-CLASGAEVYGPHTFVVHVNGTIIGL--TRYPARFVSNFRKLRRAGRFS--- 583
Query: 555 DLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNIS--LPSEESQNIELIGPFE---QVFM 609
+V + + + +++ T + RP+ + P S +I L+ + F+
Sbjct: 584 ----EFVSIYVNHHHSTVHIATDGGRICRPMIIVENQRPRVTSDHILLLKKGQVNFDDFL 639
Query: 610 EIRCPDGGDGGRRN-----------AFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMY 658
+ + D N TH EI P +L VA L PY HNQSPRN Y
Sbjct: 640 KKGLVEYLDVNEENDSYIALYEANIVSSTTHLEIEPFTILGAVAGLIPYPHHNQSPRNTY 699
Query: 659 QCQMAKQTMGFSVQALKF----RADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIV 714
QC M KQ +G A+ F R + LY PQ P+V+T T G D+ P G NA V
Sbjct: 700 QCAMGKQAIG----AIGFNQLNRIETLLYLHCYPQQPMVKTKTIELIGYDKLPAGQNATV 755
Query: 715 AVLAYTGYDMEDAMILNKSSVDRGMCHGQIY-QTETIDLSDDGNKVDR-GQKLFRRNKDA 772
AV++Y+GYD+EDA+ILNK+S+DRG Q+ + +T+ DR N
Sbjct: 756 AVMSYSGYDIEDALILNKASLDRGYGRCQVLRKNQTLIRKYPNGTFDRLADAPVDENGGV 815
Query: 773 KSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSE--------------- 817
+ + +I DGL VG+ + PG+ Y I +T + N+ G
Sbjct: 816 QKKYDIIQMDGLAGVGERVDPGDVY--INKQTPTNANDNAFVGQAASVPYKNAPMTYKSP 873
Query: 818 -SVFVDYVAV-DMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPF 875
S ++D V + D +N + L + + R TR P +GDKFSSRHGQKGVC + DMPF
Sbjct: 874 VSGYIDKVMITDTENEQTLIK---VLMRQTRRPELGDKFSSRHGQKGVCGLIVNQEDMPF 930
Query: 876 SGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
+ G+ PD I+NPH FPSRMT+ ++E +A K
Sbjct: 931 ND-QGIVPDSIMNPHGFPSRMTVGKMIELLAGK 962
>gi|380094948|emb|CCC07450.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 1150
Score = 270 bits (690), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 252/981 (25%), Positives = 424/981 (43%), Gaps = 137/981 (13%)
Query: 9 FEPLRELVRHHIESFDYMLDEGLSEMF--------------------------------- 35
F ++ LV+ HI+S++Y ++E + ++
Sbjct: 38 FLKVKGLVKQHIDSYNYFVNEEIKDIVKANRVVRSDQDPNFWLEFRDIRVGMPTRTEDGE 97
Query: 36 -----DHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADS 90
+ CR ++Y + +V+ Y S +VR+ + PVMLK+ +C+L GA +
Sbjct: 98 QVQSRNPCRLRDLTYAAPV--EVDIAYTRDKSVIVRKNIPLCRIPVMLKSAKCYLNGATN 155
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
++ E + GGYF++ G E+V IL ++ + + ++ G
Sbjct: 156 AQMEVFNECPLDPGGYFVIGGTEKV----ILIQEQLSKNRIIVEADEKTGGVMASVTSST 211
Query: 151 CVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYD 210
RK ++ V LK R+ +P+ IVLKA +D +I L C D
Sbjct: 212 HERKSKTYVVLK-------KDRIVLQHNTLSEPIPIVIVLKAFGGLSDNDII-ELVCGGD 263
Query: 211 EKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQ-----PVIDGLQSE 265
+Y+ + I E + T+ Q L+++G + P
Sbjct: 264 ARYQDD------------FLINFDEAGRAGVYTQQQALEYVGARVKMGGNRPKFGAAPRR 311
Query: 266 SYYAVAETVIRDYIFVHLN----DNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEI 321
++ + + + H+ D K + M++++ + + D+ D + N+ +
Sbjct: 312 NHAEEGLDALANLVIAHVTVEGLDFYPKAVYIAMMVRRVLMAAQNPKLVDDRDFVGNKRL 371
Query: 322 LLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTS 381
L G LI++ ED +K ++ I+N KK + + + + N I
Sbjct: 372 ELAGQLISLLF----EDLFKKFISDVKYNIDNFFKKPNRTSTYDPHGAIMAN-GHYISHG 426
Query: 382 IETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRK 440
+ +++G + ++ RAG T RL+++ + + + F R S R
Sbjct: 427 LNRAIQSGNWTVKR-FNMN-RAGITHVLSRLSYIAALGMMTRI--SSQFEKTRKVSGPRA 482
Query: 441 LLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVG 500
L P WG LC TP+GE CGL+ ++ + + N+ + ++ I VG
Sbjct: 483 LQPSQWGMLCTSDTPEGEACGLVKNLALMTHITT------NVPE-EPVKKMIFAADESVG 535
Query: 501 MIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGY 560
I + + + L+G V + E ++ A R L+ V P +
Sbjct: 536 PIREYTGTEMHSKGSYI-IHLNGTPFAV--TREPKRFAARFRTLR-RRGWVSP------F 585
Query: 561 VPLSLGGAYPGLYLFTSPPKFVRP---VRNIS--LPSEESQNIELIGPFEQVFMEIRCPD 615
V + + + +++ T + RP V+N L +E + ++L F+ +
Sbjct: 586 VSIHINEHFSAVHIATDEGRICRPYIIVKNGKSMLKAEHLKMLQLGQATFDTFLTSGVVE 645
Query: 616 GGDGGRRN-----------AFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAK 664
D N TH EI P +L VA L P+ HNQSPRN YQC M K
Sbjct: 646 YLDVNEENDTLVALQEDQITNSTTHMEIEPFTILGAVAGLIPFPHHNQSPRNTYQCAMGK 705
Query: 665 QTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDM 724
Q +G R D LY L PQ P+V T T D+ P G NA V V++Y+GYD+
Sbjct: 706 QAIGAIAYNQFNRIDTLLYTLVYPQRPMVITKTIQLIHYDKLPAGQNATVVVMSYSGYDI 765
Query: 725 EDAMILNKSSVDRGMCHGQIYQTETIDLSDDGN-KVDRGQKLFRRNKDAK-SLHSVIDSD 782
EDA++LNK+S+DRG Q+++ T +L N + DR + + D + H+++D+D
Sbjct: 766 EDALVLNKASLDRGFGRCQVFRKYTAELQGYTNGRRDRVGGIMKDEDDKPIAKHAILDAD 825
Query: 783 GLPYVGQMIHPGE-------PYCSIY-----DKTTNSWR---TNSRKGSESVFVDYVAVD 827
GL VG + G+ P I D+ ++ +R TN R S+ +D V +
Sbjct: 826 GLAQVGSKVESGQTMIKKETPLDQISTGIAGDRGSDDYRDASTNYRI-SDPAIIDKVMIS 884
Query: 828 MKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLII 887
+ +N + ++ R TR P +GDKFSSRHGQKGV + + DMPFS G+RPD+I+
Sbjct: 885 VNEREN--KLIKVQTRQTRRPELGDKFSSRHGQKGVVGIIVNEEDMPFSD-KGLRPDIIM 941
Query: 888 NPHAFPSRMTIAMLLESVAAK 908
NPH FPSRMT+ L E + K
Sbjct: 942 NPHGFPSRMTVGKLFECLTGK 962
>gi|336272055|ref|XP_003350785.1| hypothetical protein SMAC_02456 [Sordaria macrospora k-hell]
Length = 1117
Score = 270 bits (689), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 252/981 (25%), Positives = 424/981 (43%), Gaps = 137/981 (13%)
Query: 9 FEPLRELVRHHIESFDYMLDEGLSEMF--------------------------------- 35
F ++ LV+ HI+S++Y ++E + ++
Sbjct: 38 FLKVKGLVKQHIDSYNYFVNEEIKDIVKANRVVRSDQDPNFWLEFRDIRVGMPTRTEDGE 97
Query: 36 -----DHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADS 90
+ CR ++Y + +V+ Y S +VR+ + PVMLK+ +C+L GA +
Sbjct: 98 QVQSRNPCRLRDLTYAAPV--EVDIAYTRDKSVIVRKNIPLCRIPVMLKSAKCYLNGATN 155
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
++ E + GGYF++ G E+V IL ++ + + ++ G
Sbjct: 156 AQMEVFNECPLDPGGYFVIGGTEKV----ILIQEQLSKNRIIVEADEKTGGVMASVTSST 211
Query: 151 CVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYD 210
RK ++ V LK R+ +P+ IVLKA +D +I L C D
Sbjct: 212 HERKSKTYVVLK-------KDRIVLQHNTLSEPIPIVIVLKAFGGLSDNDII-ELVCGGD 263
Query: 211 EKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQ-----PVIDGLQSE 265
+Y+ + I E + T+ Q L+++G + P
Sbjct: 264 ARYQDD------------FLINFDEAGRAGVYTQQQALEYVGARVKMGGNRPKFGAAPRR 311
Query: 266 SYYAVAETVIRDYIFVHLN----DNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEI 321
++ + + + H+ D K + M++++ + + D+ D + N+ +
Sbjct: 312 NHAEEGLDALANLVIAHVTVEGLDFYPKAVYIAMMVRRVLMAAQNPKLVDDRDFVGNKRL 371
Query: 322 LLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTS 381
L G LI++ ED +K ++ I+N KK + + + + N I
Sbjct: 372 ELAGQLISLLF----EDLFKKFISDVKYNIDNFFKKPNRTSTYDPHGAIMAN-GHYISHG 426
Query: 382 IETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRK 440
+ +++G + ++ RAG T RL+++ + + + F R S R
Sbjct: 427 LNRAIQSGNWTVKR-FNMN-RAGITHVLSRLSYIAALGMMTRI--SSQFEKTRKVSGPRA 482
Query: 441 LLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVG 500
L P WG LC TP+GE CGL+ ++ + + N+ + ++ I VG
Sbjct: 483 LQPSQWGMLCTSDTPEGEACGLVKNLALMTHITT------NVPE-EPVKKMIFAADESVG 535
Query: 501 MIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGY 560
I + + + L+G V + E ++ A R L+ V P +
Sbjct: 536 PIREYTGTEMHSKGSYI-IHLNGTPFAV--TREPKRFAARFRTLR-RRGWVSP------F 585
Query: 561 VPLSLGGAYPGLYLFTSPPKFVRP---VRNIS--LPSEESQNIELIGPFEQVFMEIRCPD 615
V + + + +++ T + RP V+N L +E + ++L F+ +
Sbjct: 586 VSIHINEHFSAVHIATDEGRICRPYIIVKNGKSMLKAEHLKMLQLGQATFDTFLTSGVVE 645
Query: 616 GGDGGRRN-----------AFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAK 664
D N TH EI P +L VA L P+ HNQSPRN YQC M K
Sbjct: 646 YLDVNEENDTLVALQEDQITNSTTHMEIEPFTILGAVAGLIPFPHHNQSPRNTYQCAMGK 705
Query: 665 QTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDM 724
Q +G R D LY L PQ P+V T T D+ P G NA V V++Y+GYD+
Sbjct: 706 QAIGAIAYNQFNRIDTLLYTLVYPQRPMVITKTIQLIHYDKLPAGQNATVVVMSYSGYDI 765
Query: 725 EDAMILNKSSVDRGMCHGQIYQTETIDLSDDGN-KVDRGQKLFRRNKDAK-SLHSVIDSD 782
EDA++LNK+S+DRG Q+++ T +L N + DR + + D + H+++D+D
Sbjct: 766 EDALVLNKASLDRGFGRCQVFRKYTAELQGYTNGRRDRVGGIMKDEDDKPIAKHAILDAD 825
Query: 783 GLPYVGQMIHPGE-------PYCSIY-----DKTTNSWR---TNSRKGSESVFVDYVAVD 827
GL VG + G+ P I D+ ++ +R TN R S+ +D V +
Sbjct: 826 GLAQVGSKVESGQTMIKKETPLDQISTGIAGDRGSDDYRDASTNYRI-SDPAIIDKVMIS 884
Query: 828 MKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLII 887
+ +N + ++ R TR P +GDKFSSRHGQKGV + + DMPFS G+RPD+I+
Sbjct: 885 VNEREN--KLIKVQTRQTRRPELGDKFSSRHGQKGVVGIIVNEEDMPFSD-KGLRPDIIM 941
Query: 888 NPHAFPSRMTIAMLLESVAAK 908
NPH FPSRMT+ L E + K
Sbjct: 942 NPHGFPSRMTVGKLFECLTGK 962
>gi|313221111|emb|CBY31939.1| unnamed protein product [Oikopleura dioica]
Length = 1110
Score = 270 bits (689), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 262/980 (26%), Positives = 429/980 (43%), Gaps = 175/980 (17%)
Query: 9 FEPLRELVRHHIESFDYMLDEGLSEM----------------FDH--------------- 37
F R LV+ H++SF+Y+L +GL ++ +DH
Sbjct: 44 FLETRGLVKQHLDSFNYLLTQGLQKIIKANARTDVDQNFFWNYDHIYVDPPDVEYGMRSE 103
Query: 38 ------CRQAKISYTGKLMADVEF----QYLDAGSPVVRERFNFGQFPVMLKTRRCHLQG 87
CR ++Y+ + DV + Q A V+ G+ P+ML++ RC L
Sbjct: 104 AITPHECRLRDMTYSAPIKVDVTYVRDNQIRKARGLVI------GRMPIMLRSARCVLAN 157
Query: 88 ADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAV 147
++ KE + GGYF++ G E+V + M + +R DK
Sbjct: 158 MSQEQFFKAKECPLDPGGYFVVKGAEKV------------LLMQEQAVSNRILVEKDKTG 205
Query: 148 VIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVL--KALVDTNDLEIFNHL 205
+ V K +S L+ ++ +++ + PV +V+ KAL D EI L
Sbjct: 206 MFCAVVKSKSDTANTQTNLIQSKNKI--YVKQNKLREPVNVVVLFKALGIERDQEI-AEL 262
Query: 206 TCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHF----QPVIDG 261
D A+ +P L E Q L + ++ Q ++++ + P++
Sbjct: 263 IATEDSTL-----ALLAP--------SLFECQQLEIFSQNQAMKYLEKTIMRIQNPIVSR 309
Query: 262 LQSESYYAVA-----ETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
Q +S + V E + +++ L N + K ++ +D+ D
Sbjct: 310 SQMQSRFQVRTPRNREQEVHNWLVSTLLVN-------VPYCYKRRGMIK----ADDRDYY 358
Query: 317 QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
N+ I L G LI++ +E +++ + ++ I ++E + + ++ M K+
Sbjct: 359 GNKRIQLAGDLISLLFEEHFKNFNDELRRTIGKKLEKKTAQ-----VVDVISSM-KSLQN 412
Query: 377 QIGTSIETMLKTGRLATQT-GLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASF-AGLR 434
+I ++E ++TG + +D R G T R++F+ I F ++
Sbjct: 413 KITLAMEAAIQTGNWNLKRFKMD---RKGITEILNRMSFISIILVGTMTRIKGHFEKTMK 469
Query: 435 TTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILR 494
T R L WG LCP TP+G CGL+ +M V ++ D + I R
Sbjct: 470 VTGPRALQGSQWGMLCPSDTPEGAQCGLVKNMALLSHVTTFEDDK-----------PIHR 518
Query: 495 VLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVI--PSSEIEKVVAHLRRLKVSAASVI 552
+LI +G+ + A V L+G +VG P S + + V +RR A +
Sbjct: 519 LLINLGVEETSTLSGYDLHGANYLVFLNGALVGATRNPKS-LTRTVQLIRR-----AGRL 572
Query: 553 PDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRP---VRNISLPSEESQNIELIGPFEQVFM 609
P+ +V + + + +YL + + RP V N P ++I + +
Sbjct: 573 PE-----FVSVYVSEEHRAVYLASDGGRLTRPCIIVEN-GRPKVTQKHINAL-----LEG 621
Query: 610 EIRCPDGGDGG---------RRNAFPA----------THEEIHPTGMLSVVANLTPYSDH 650
++ PD G +A A TH EI P +L V A L PY DH
Sbjct: 622 RVKFPDFVKNGLIEYLDVNEENSALIAVYERDITKKHTHLEIEPFALLGVCAGLIPYPDH 681
Query: 651 NQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGT 710
NQSPRN YQC M KQ MG + R D LY+L PQ P+V+T T G ++ P G
Sbjct: 682 NQSPRNTYQCAMGKQAMGTIAMNQRERIDSCLYNLVYPQRPLVKTRTIELIGFEQLPAGQ 741
Query: 711 NAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDR-GQKLFRRN 769
NA VAV++Y+GYD+EDA++LNK+SVDRG +Y+ E L G V+ +++
Sbjct: 742 NATVAVMSYSGYDIEDALVLNKASVDRGYGRCLVYRNEKTQLQRRGTLVETIEERIDGPA 801
Query: 770 KDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNS-RKGSESVFVDYVAVDM 828
DAKS + + L G ++ PGE + D+ ++ G+E V + A
Sbjct: 802 LDAKSGEKIRADECLDMDG-IVAPGE---RVKDRAPTMAKSQPIHIGTERVMISEDAT-- 855
Query: 829 KNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIIN 888
+ + +R TR P +GDKFSSRHGQKGV + P +MPF+ + GM PD+I+N
Sbjct: 856 ------WRMVKLSYRQTRRPELGDKFSSRHGQKGVTGLIVPQENMPFNEI-GMCPDVIMN 908
Query: 889 PHAFPSRMTIAMLLESVAAK 908
PH +PSRMT+ L+E + +K
Sbjct: 909 PHGYPSRMTVGKLMECIGSK 928
>gi|167382955|ref|XP_001733337.1| DNA-directed RNA polymerase III subunit RPC2 [Entamoeba dispar
SAW760]
gi|165901325|gb|EDR27409.1| DNA-directed RNA polymerase III subunit RPC2, putative [Entamoeba
dispar SAW760]
Length = 1115
Score = 269 bits (688), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 263/977 (26%), Positives = 422/977 (43%), Gaps = 142/977 (14%)
Query: 9 FEPLRELVRHHIESFDYMLDEGLSEMF--------------------------------- 35
F R LVR HI+SF+Y +DE + ++
Sbjct: 49 FVKARGLVRQHIDSFNYFIDEEIKQIVKANDKITCDADPTFYLKYLDVKVDTPCVEVDYK 108
Query: 36 ------DHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGAD 89
CR ISYT ++A++++ + R+ G P+ML+++ C L
Sbjct: 109 KESITPQECRLRDISYTAPILANIQYT---RDKKIFRKTVTIGYMPIMLQSKHCVLYNNT 165
Query: 90 SQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVI 149
++ + E + GGYFI+ G+ERV IL ++ MS R +G+ +V
Sbjct: 166 FEEFIRHGECPMDPGGYFIVKGVERV----ILSQEQ--MSKNRILIETTTQGFLSASVTS 219
Query: 150 RCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY 209
+V YL G + L ++ LP+ IV+KA+ +D+E
Sbjct: 220 ATHEVKSRTVV----YLKKGKLYLKHNSLTED--LPIMIVIKAMGMESDMEFLQF----- 268
Query: 210 DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDG----LQSE 265
VG+ S+ + I E + + + + L++IG H + + G +
Sbjct: 269 ----------VGNHYTSKMINSI-EECKTKDVLNQREALRYIGNHLK-IYTGQKGYISKR 316
Query: 266 SYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLV---DHTSVSDNPDSLQNQEIL 322
A V+ + + H+ N F I L + + + D T D+ D N+ +
Sbjct: 317 PKIEEARDVLANLVLPHIEVNRYNFKTKIIYLALMVNWILKADETGELDDKDYYGNKRME 376
Query: 323 LPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSI 382
L G L+++ ED ++ +Q+ K +I K + +P + I
Sbjct: 377 LAGQLMSLLF----EDLFKQFNTDLQNAANKGLTKKSRSETFDIIKCI--SPHRITQGLI 430
Query: 383 ETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKL 441
++ + + +D RAG T RL+++ + ++ + F R S R L
Sbjct: 431 HSLSTGNWVLKRFNMD---RAGITQVLSRLSYISALGMMTRLN--SHFEKTRKVSGPRSL 485
Query: 442 LPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGM 501
WG +CP TP+GE CGL+ + + V + D + +I+ +L +G+
Sbjct: 486 QGSQWGMVCPSDTPEGESCGLVKNFSLLTEVTTDSDDQ-----------AIVTMLFNLGV 534
Query: 502 IPSLPKLVKSGPPAVLS---VLLDGRVVGVIPSS-EIEKVVAHLRRLKVSAASVIPDDLE 557
+ L+ LS V L+G+++G+ + K LRR V L
Sbjct: 535 EDA--NLISGDEVNALSSYLVFLNGQLLGIHQNPIHFLKQCRLLRRHGRLGKKV---SLH 589
Query: 558 VGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGG 617
+ + S+ + G + P V ++ P E +E E E
Sbjct: 590 LNEMQRSINISSDGGRV-CRPLIVVENCKSKIGPKEIRDIVEGFKSIEDCLKEGLIEYLD 648
Query: 618 DGGRRNAFPA----------THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTM 667
N++ A TH EI P +L VVA L PY HNQSPRN YQC M KQ +
Sbjct: 649 VNEENNSYIAISENEINEHTTHLEIDPLSILGVVAGLIPYPHHNQSPRNTYQCAMGKQAI 708
Query: 668 GFSVQALKF-RADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMED 726
G ++ +F R D LY L PQ P+V+T T D+ P G NA+VAV++Y+GYD+ED
Sbjct: 709 G-TIGYNQFKRIDTLLYLLYYPQIPMVKTKTIDMINFDKLPAGQNAMVAVMSYSGYDIED 767
Query: 727 AMILNKSSVDRGMCHGQIY-QTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLP 785
A ILNK+S+DRG +Y + E + DR ++ S +D DG+
Sbjct: 768 ASILNKASIDRGYGRCFVYRKAECVIKKYKNGACDRVVCPTDEERELPKYKS-LDFDGVC 826
Query: 786 YVGQMIHPGE-------PYCSIYDKTTNSWRTN-------SRKGSESVFVDYVAVDMKNS 831
G +++PG P ++ TT++ + + + KG +VD V + ++
Sbjct: 827 SPGSILNPGSIYLNKQVPINTVGTLTTDTIKDDEYRREVLTYKGPVPSYVDQVLI--TSN 884
Query: 832 KNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHA 891
+ P K I R +R P +GDKFSSRHGQKGV + DMPF+ TG+ PD+I+NPH
Sbjct: 885 EEEPLKVKISLRTSRRPELGDKFSSRHGQKGVTGLIVNQEDMPFTN-TGICPDVIMNPHG 943
Query: 892 FPSRMTIAMLLESVAAK 908
FPSRMT+ LLE V+ K
Sbjct: 944 FPSRMTVGKLLELVSGK 960
>gi|449708606|gb|EMD48033.1| DNA-directed RNA polymerase III subunit 127.6 kDa polypeptide,
putative [Entamoeba histolytica KU27]
Length = 1141
Score = 269 bits (688), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 263/975 (26%), Positives = 423/975 (43%), Gaps = 138/975 (14%)
Query: 9 FEPLRELVRHHIESFDYMLDEGLSEMF--------------------------------- 35
F R LVR HI+SF+Y +DE + ++
Sbjct: 49 FVKARGLVRQHIDSFNYFIDEEIKQIVKANDKITCDADPRFYLKYLDVKVDTPCVEVDYK 108
Query: 36 ------DHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGAD 89
CR ISYT ++A++++ + + R+ G P+ML+++ C L
Sbjct: 109 KESITPQECRLRDISYTAPILANIQYT---RDNKIFRKTVTIGYMPIMLQSKHCVLYNNT 165
Query: 90 SQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVI 149
++ + E + GGYFI+ G+ERV IL ++ MS R +G+ +V
Sbjct: 166 FEEFIRHGECPMDPGGYFIVKGVERV----ILSQEQ--MSKNRILIETTTQGFLSASVTS 219
Query: 150 RCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY 209
+V YL G + L ++ LP+ IV+KA+ +D+E
Sbjct: 220 ATHEVKSRTVV----YLKKGKLYLKHNSLTED--LPIMIVIKAMGMESDMEFLQF----- 268
Query: 210 DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDG----LQSE 265
VG+ S+ + I E + + + + L++IG H + + G +
Sbjct: 269 ----------VGNHYTSKMINSI-EECKAKDVLNQREALRYIGNHLK-IYTGQKGYISKR 316
Query: 266 SYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLV---DHTSVSDNPDSLQNQEIL 322
A V+ + + H+ N F I + + + + D T D+ D N+ +
Sbjct: 317 PKIEEARDVLANLVLPHIEVNRYNFKTKIIYIALMVNWILKADETGELDDKDYYGNKRME 376
Query: 323 LPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSI 382
L G L+++ ED ++ +Q+ K +I K + +P + I
Sbjct: 377 LAGQLMSLLF----EDLFKQFNTDLQNAANKGLTKKSRSETFDIIKCI--SPHRITQGLI 430
Query: 383 ETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKL 441
++ + + +D RAG T RL+++ + ++ + F R S R L
Sbjct: 431 HSLSTGNWVLKRFNMD---RAGITQVLSRLSYISALGMMTRLN--SHFEKTRKVSGPRSL 485
Query: 442 LPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGM 501
WG +CP TP+GE CGL+ + + V + DS +I+ +L +G+
Sbjct: 486 QGSQWGMVCPSDTPEGESCGLVKNFSLLTEVTT--DSNDE---------AIVTMLFNLGV 534
Query: 502 -IPSLPKLVKSGPPAVLSVLLDGRVVGVIPSS-EIEKVVAHLRRLKVSAASVIPDDLEVG 559
+L + P+ V L+G+++G+ + K LRR V L +
Sbjct: 535 EDANLISGDEVNAPSSYLVFLNGQLLGIHQNPIHFLKQCRLLRRHGRLGKKV---SLHLN 591
Query: 560 YVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDG 619
+ S+ + G + P V ++ P E +E E E
Sbjct: 592 EMQRSINISSDGGRV-CRPLIVVENCKSKIGPKEIRDIVEGFKSIEDCLKEGLIEYLDVN 650
Query: 620 GRRNAFPA----------THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGF 669
N++ A TH EI P +L VVA L PY HNQSPRN YQC M KQ +G
Sbjct: 651 EENNSYIAINENEINEHTTHLEIDPLSILGVVAGLIPYPHHNQSPRNTYQCAMGKQAIG- 709
Query: 670 SVQALKF-RADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAM 728
++ +F R D LY L PQ P+V+T T D+ P G NA+VAV++Y+GYD+EDA
Sbjct: 710 TIGYNQFKRVDTLLYLLYYPQIPMVKTKTIDMINFDKLPAGQNAMVAVMSYSGYDIEDAS 769
Query: 729 ILNKSSVDRGMCHGQIY-QTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYV 787
ILNK+S+DRG +Y + E + DR ++ S +D DG+
Sbjct: 770 ILNKASIDRGYGRCFVYRKAECVIKKYKNGACDRVVCPTDEERELPKYKS-LDFDGVCSP 828
Query: 788 GQMIHPGE-------PYCSIYDKTTNSWRTN-------SRKGSESVFVDYVAVDMKNSKN 833
G +++PG P +I TT++ + + + KG +VD V + +++
Sbjct: 829 GSILNPGSIYLNKQVPLNTIGTLTTDTIKDDEYRREVLTYKGPVPSYVDQVLI--TSNEE 886
Query: 834 LPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFP 893
P K I R +R P +GDKFSSRHGQKGV + DMPF+ TG+ PD+I+NPH FP
Sbjct: 887 EPLKVKISLRTSRRPELGDKFSSRHGQKGVTGLIVNQEDMPFTN-TGICPDVIMNPHGFP 945
Query: 894 SRMTIAMLLESVAAK 908
SRMT+ LLE V+ K
Sbjct: 946 SRMTVGKLLELVSGK 960
>gi|183232813|ref|XP_654890.2| DNA-directed RNA polymerase III subunit 127.6 kDa polypeptide
[Entamoeba histolytica HM-1:IMSS]
gi|169801863|gb|EAL49502.2| DNA-directed RNA polymerase III subunit 127.6 kDa polypeptide,
putative [Entamoeba histolytica HM-1:IMSS]
Length = 1122
Score = 269 bits (687), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 263/975 (26%), Positives = 423/975 (43%), Gaps = 138/975 (14%)
Query: 9 FEPLRELVRHHIESFDYMLDEGLSEMF--------------------------------- 35
F R LVR HI+SF+Y +DE + ++
Sbjct: 30 FVKARGLVRQHIDSFNYFIDEEIKQIVKANDKITCDADPRFYLKYLDVKVDTPCVEVDYK 89
Query: 36 ------DHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGAD 89
CR ISYT ++A++++ + + R+ G P+ML+++ C L
Sbjct: 90 KESITPQECRLRDISYTAPILANIQYT---RDNKIFRKTVTIGYMPIMLQSKHCVLYNNT 146
Query: 90 SQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVI 149
++ + E + GGYFI+ G+ERV IL ++ MS R +G+ +V
Sbjct: 147 FEEFIRHGECPMDPGGYFIVKGVERV----ILSQEQ--MSKNRILIETTTQGFLSASVTS 200
Query: 150 RCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY 209
+V YL G + L ++ LP+ IV+KA+ +D+E
Sbjct: 201 ATHEVKSRTVV----YLKKGKLYLKHNSLTED--LPIMIVIKAMGMESDMEFLQF----- 249
Query: 210 DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDG----LQSE 265
VG+ S+ + I E + + + + L++IG H + + G +
Sbjct: 250 ----------VGNHYTSKMINSI-EECKAKDVLNQREALRYIGNHLK-IYTGQKGYISKR 297
Query: 266 SYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLV---DHTSVSDNPDSLQNQEIL 322
A V+ + + H+ N F I + + + + D T D+ D N+ +
Sbjct: 298 PKIEEARDVLANLVLPHIEVNRYNFKTKIIYIALMVNWILKADETGELDDKDYYGNKRME 357
Query: 323 LPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSI 382
L G L+++ ED ++ +Q+ K +I K + +P + I
Sbjct: 358 LAGQLMSLLF----EDLFKQFNTDLQNAANKGLTKKSRSETFDIIKCI--SPHRITQGLI 411
Query: 383 ETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKL 441
++ + + +D RAG T RL+++ + ++ + F R S R L
Sbjct: 412 HSLSTGNWVLKRFNMD---RAGITQVLSRLSYISALGMMTRLN--SHFEKTRKVSGPRSL 466
Query: 442 LPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGM 501
WG +CP TP+GE CGL+ + + V + DS +I+ +L +G+
Sbjct: 467 QGSQWGMVCPSDTPEGESCGLVKNFSLLTEVTT--DSNDE---------AIVTMLFNLGV 515
Query: 502 -IPSLPKLVKSGPPAVLSVLLDGRVVGVIPSS-EIEKVVAHLRRLKVSAASVIPDDLEVG 559
+L + P+ V L+G+++G+ + K LRR V L +
Sbjct: 516 EDANLISGDEVNAPSSYLVFLNGQLLGIHQNPIHFLKQCRLLRRHGRLGKKV---SLHLN 572
Query: 560 YVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDG 619
+ S+ + G + P V ++ P E +E E E
Sbjct: 573 EMQRSINISSDGGRV-CRPLIVVENCKSKIGPKEIRDIVEGFKSIEDCLKEGLIEYLDVN 631
Query: 620 GRRNAFPA----------THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGF 669
N++ A TH EI P +L VVA L PY HNQSPRN YQC M KQ +G
Sbjct: 632 EENNSYIAINENEINEHTTHLEIDPLSILGVVAGLIPYPHHNQSPRNTYQCAMGKQAIG- 690
Query: 670 SVQALKF-RADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAM 728
++ +F R D LY L PQ P+V+T T D+ P G NA+VAV++Y+GYD+EDA
Sbjct: 691 TIGYNQFKRVDTLLYLLYYPQIPMVKTKTIDMINFDKLPAGQNAMVAVMSYSGYDIEDAS 750
Query: 729 ILNKSSVDRGMCHGQIY-QTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYV 787
ILNK+S+DRG +Y + E + DR ++ S +D DG+
Sbjct: 751 ILNKASIDRGYGRCFVYRKAECVIKKYKNGACDRVVCPTDEERELPKYKS-LDFDGVCSP 809
Query: 788 GQMIHPGE-------PYCSIYDKTTNSWRTN-------SRKGSESVFVDYVAVDMKNSKN 833
G +++PG P +I TT++ + + + KG +VD V + +++
Sbjct: 810 GSILNPGSIYLNKQVPLNTIGTLTTDTIKDDEYRREVLTYKGPVPSYVDQVLI--TSNEE 867
Query: 834 LPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFP 893
P K I R +R P +GDKFSSRHGQKGV + DMPF+ TG+ PD+I+NPH FP
Sbjct: 868 EPLKVKISLRTSRRPELGDKFSSRHGQKGVTGLIVNQEDMPFTN-TGICPDVIMNPHGFP 926
Query: 894 SRMTIAMLLESVAAK 908
SRMT+ LLE V+ K
Sbjct: 927 SRMTVGKLLELVSGK 941
>gi|402589446|gb|EJW83378.1| DNA-directed RNA polymerase [Wuchereria bancrofti]
Length = 947
Score = 269 bits (687), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 259/990 (26%), Positives = 429/990 (43%), Gaps = 159/990 (16%)
Query: 9 FEPLRELVRHHIESFDYML------------------------------------DEGLS 32
F +R LV+ HI S+DY + +EG +
Sbjct: 21 FLQVRGLVKQHIASYDYFVSTEIKKILRANDRITSDANPSFYLKYLDIRVGMPSSEEGFN 80
Query: 33 EMFD-----HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQG 87
++ D CR ++Y+ + D+E Y V+R G+ PVML++ +C L+
Sbjct: 81 QINDKISPHECRLRDMTYSAPISVDIE--YTRGSQRVLRNGLIIGKMPVMLRSSKCVLKN 138
Query: 88 ADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAV 147
+ +L ++E + GGYFI+ G E+V +L ++ + + ++E +
Sbjct: 139 MNESELARVQECPYDPGGYFIIRGSEKV----VLIQEQLSKNRIMIGRNSKKELQCE--- 191
Query: 148 VIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYL--LPVGIVLKALVDTNDLEIFNHL 205
V+ ++ +S + S + ++++ + +PV IV KA+ +D +I + +
Sbjct: 192 VLSSTQERKSKTYI-------ASRKQRYYVRHNQLSDDVPVAIVFKAMGFESDHDIVSAV 244
Query: 206 TCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEH-----FQPVID 260
+EK+ A +P + E + T+ LQ+I F P
Sbjct: 245 G--LEEKFV----AAMAPSIEE--------CASHQIVTQEGALQYIASKVKMRKFGPTAS 290
Query: 261 GLQSESYYAVAETVIRDYIFVHLN--DNNDKFN--LLIFMLQKLFSLVDHTSVSDNPDSL 316
G + A + + + H+ D N K L M+++L + D+ D
Sbjct: 291 GTSTLPREHEAIDFLSNLMIAHVPCPDGNMKMKAVYLGLMVRRLMQAEVGDTECDDRDFY 350
Query: 317 QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
N+ + L G L+ + ++ + + + K++ + + GK LA +++
Sbjct: 351 GNKRLELAGSLLALLFEDVFKRFNSELKRIADNSL---GK-----TLAAPLDIVKHVRQD 402
Query: 377 QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
I ++ L TG + +R G T RL+++ + ++ ++F R
Sbjct: 403 LITNALVDALATGNWTIKRFK--MERQGVTQVLSRLSYISVLGMMTRIN--STFEKTRKV 458
Query: 437 S-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRV 495
S R L P WG LCP TP+GE CGL+ ++ + + D + IR L
Sbjct: 459 SGPRSLQPSQWGMLCPSDTPEGESCGLVKNLALISHITTDSDEKPVIR---------LLY 509
Query: 496 LIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDD 555
GV + SL PA V L+G +VG+ + + +++V+ +R ++
Sbjct: 510 NAGVEDVKSL-HFSAIHSPAYHIVFLNGVIVGL--TIDPQRIVSTIRAVRRHG------- 559
Query: 556 LEVGYVPLSLGGAYPGLYLFTSPPKFVRP---VRNISLPSEESQNIELIGPFEQVFMEI- 611
L +V +S A +Y+ + + RP V+N +P ++IE + ++F +
Sbjct: 560 LLNEFVSVSTNAAQRSVYIASDGGRLCRPYIIVKN-GVPQVTQEHIEELKKGCRIFEDFV 618
Query: 612 -----------RCPDGGDGGRRNAF--PATHEEIHPTGMLSVVANLTPYSDHNQSPRNMY 658
D N TH EI P +L V A L PY HNQSPRN Y
Sbjct: 619 DDGLIEYLDVNEMNDASIAVYENQIKPTTTHLEIEPFTLLGVCAGLIPYPHHNQSPRNTY 678
Query: 659 QCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLA 718
QC M KQ MG + R D +Y L PQ P+V+T T ++ P G NAI+AV++
Sbjct: 679 QCAMGKQAMGTIGYNQQKRIDSLMYLLVYPQRPLVKTKTIEFCNFEKLPAGQNAIIAVMS 738
Query: 719 YTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKV-DR--GQKLFRRNKDAKSL 775
Y+GYD+EDA++LNK+S+DRG +Y+ N+ DR G + +
Sbjct: 739 YSGYDIEDALVLNKASLDRGYGRCLVYKHAKATARKYPNQTFDRLMGPTIEATTRKPIYK 798
Query: 776 HSVIDSDGLPYVGQ-------MIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDM 828
H V+D +G+ YVG MI+ P S+ T S + G S V+Y V +
Sbjct: 799 HQVLDQEGIVYVGACIRSKQVMINKHMPVVSMEAGATVSNNDGTSVGG-SHGVEYKDVSV 857
Query: 829 KNSKNLPQKA---------------NIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDM 873
+P A + R TR P +GDKFSSRHGQKGVC + DM
Sbjct: 858 VYRNPIPSYAERVLLTYNEDDAHLIKVLLRQTRRPELGDKFSSRHGQKGVCGLIAQQEDM 917
Query: 874 PFSGVTGMRPDLIINPHAFPSRMTIAMLLE 903
PF+ + GM PD+I+NPH +PSRMT+ L+E
Sbjct: 918 PFNDL-GMCPDMIMNPHGYPSRMTVGKLME 946
>gi|407043800|gb|EKE42160.1| DNA-directed RNA polymerase, beta subunit domain containing protein
[Entamoeba nuttalli P19]
Length = 1141
Score = 269 bits (687), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 263/975 (26%), Positives = 423/975 (43%), Gaps = 138/975 (14%)
Query: 9 FEPLRELVRHHIESFDYMLDEGLSEMF--------------------------------- 35
F R LVR HI+SF+Y +DE + ++
Sbjct: 49 FVKARGLVRQHIDSFNYFIDEEIKQIVKANDKITCDADPRFYLKYLDVKVDTPCVEVDYK 108
Query: 36 ------DHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGAD 89
CR ISYT ++A++++ + + R+ G P+ML+++ C L
Sbjct: 109 KESITPQECRLRDISYTAPILANIQYT---RDNKIFRKTVTIGYMPIMLQSKHCVLYNNT 165
Query: 90 SQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVI 149
++ + E + GGYFI+ G+ERV IL ++ MS R +G+ +V
Sbjct: 166 FEEFIRHGECPMDPGGYFIVKGVERV----ILSQEQ--MSKNRILIETTTQGFLSASVTS 219
Query: 150 RCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY 209
+V YL G + L ++ LP+ IV+KA+ +D+E
Sbjct: 220 ATHEVKSRTVV----YLKKGKLYLKHNSLTED--LPIMIVIKAMGMESDMEFLQF----- 268
Query: 210 DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDG----LQSE 265
VG+ S+ + I E + + + + L++IG H + + G +
Sbjct: 269 ----------VGNHYTSKMINSI-EECKAKDVLNQREALRYIGNHLK-IYTGQKGYISKR 316
Query: 266 SYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLV---DHTSVSDNPDSLQNQEIL 322
A V+ + + H+ N F I + + + + D T D+ D N+ +
Sbjct: 317 PKIEEARDVLANLVLPHIEVNRYNFKTKIIYIALMVNWILKADETGELDDKDYYGNKRME 376
Query: 323 LPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSI 382
L G L+++ ED ++ +Q+ K +I K + +P + I
Sbjct: 377 LAGQLMSLLF----EDLFKQFNTDLQNAANKGLTKKSRSETFDIIKCI--SPHRITQGLI 430
Query: 383 ETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKL 441
++ + + +D RAG T RL+++ + ++ + F R S R L
Sbjct: 431 HSLSTGNWVLKRFNMD---RAGITQVLSRLSYISALGMMTRLN--SHFEKTRKVSGPRSL 485
Query: 442 LPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGM 501
WG +CP TP+GE CGL+ + + V + DS +I+ +L +G+
Sbjct: 486 QGSQWGMVCPSDTPEGESCGLVKNFSLLTEVTT--DSNDQ---------AIVTMLFNLGV 534
Query: 502 -IPSLPKLVKSGPPAVLSVLLDGRVVGVIPSS-EIEKVVAHLRRLKVSAASVIPDDLEVG 559
+L + P+ V L+G+++G+ + K LRR V L +
Sbjct: 535 EDANLISGDEVNAPSSYLVFLNGQLLGIHQNPIHFLKQCRLLRRHGRLGKKV---SLHLN 591
Query: 560 YVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDG 619
+ S+ + G + P V ++ P E +E E E
Sbjct: 592 EMQRSINISSDGGRV-CRPLIVVENCKSKIGPKEIRDIVEGFKSIEDCLKEGLIEYLDVN 650
Query: 620 GRRNAFPA----------THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGF 669
N++ A TH EI P +L VVA L PY HNQSPRN YQC M KQ +G
Sbjct: 651 EENNSYIAINENEINEHTTHLEIDPLSILGVVAGLIPYPHHNQSPRNTYQCAMGKQAIG- 709
Query: 670 SVQALKF-RADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAM 728
++ +F R D LY L PQ P+V+T T D+ P G NA+VAV++Y+GYD+EDA
Sbjct: 710 TIGYNQFKRVDTLLYLLYYPQIPMVKTKTIDMINFDKLPAGQNAMVAVMSYSGYDIEDAS 769
Query: 729 ILNKSSVDRGMCHGQIY-QTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYV 787
ILNK+S+DRG +Y + E + DR ++ S +D DG+
Sbjct: 770 ILNKASIDRGYGRCFVYRKAECVIKKYKNGACDRVVCPTDEERELPKYKS-LDFDGVCSP 828
Query: 788 GQMIHPGE-------PYCSIYDKTTNSWRTN-------SRKGSESVFVDYVAVDMKNSKN 833
G +++PG P +I TT++ + + + KG +VD V + +++
Sbjct: 829 GSILNPGSIYLNKQVPLNTIGTLTTDTIKDDEYRREVLTYKGPVPSYVDQVLI--TSNEE 886
Query: 834 LPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFP 893
P K I R +R P +GDKFSSRHGQKGV + DMPF+ TG+ PD+I+NPH FP
Sbjct: 887 EPLKVKISLRTSRRPELGDKFSSRHGQKGVTGLIVNQEDMPFTN-TGICPDVIMNPHGFP 945
Query: 894 SRMTIAMLLESVAAK 908
SRMT+ LLE V+ K
Sbjct: 946 SRMTVGKLLELVSGK 960
>gi|410907712|ref|XP_003967335.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like
[Takifugu rubripes]
Length = 1132
Score = 269 bits (687), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 251/923 (27%), Positives = 410/923 (44%), Gaps = 125/923 (13%)
Query: 37 HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
CR ++Y+ + D+E Y ++R G+ P+ML++ C L G + L
Sbjct: 101 ECRLRDMTYSAPITVDIE--YTRGSQRIIRNALPIGRMPIMLRSSNCVLTGKTPMEFAKL 158
Query: 97 KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRC-VRKD 155
E + GGYFI+ G E+V +++ +Q +S R R+G +V +K
Sbjct: 159 NECPLDPGGYFIVKGQEKV---ILIQEQ---LSKNRIIVDQDRKGAVGASVTSSTHEKKS 212
Query: 156 QSSVTLKLYYLLNGSVRLGFWLQGKEYL--------LPVGIVLKALVDTNDLEIFNHLTC 207
++++ +K QG+ YL P+ I+ K + +D EI +
Sbjct: 213 RTNMIVK---------------QGRFYLRHNTLSEDAPIAIIFKGMGVESDQEIVQMIG- 256
Query: 208 CYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQ-PVIDGLQSES 266
E Y V L E Q + T+ Q L+++G + + G ++
Sbjct: 257 --TEDY-----------VMASFAPSLEECQKAQIFTQTQALRYLGNKVRRQRMWGGPKKT 303
Query: 267 YYAVAETVIRDYIFVHLNDNNDKFN----LLIFMLQKLFSLVDHTSVSDNPDSLQNQEIL 322
A ++ I H+ F L M++++ L + D+ D N+ +
Sbjct: 304 KMEEARELLASLILTHVPVKEFNFRAKCIYLAVMVRRVI-LAQGGNKVDDRDYYGNKRLE 362
Query: 323 LPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSI 382
L G L+++ ++ + + + KK I D+I + F ++ K M ++ QI +
Sbjct: 363 LAGQLLSLLFEDLFKKFNSELKK-IADQIIPKQRAAQF----DVVKHMRQD---QITNGM 414
Query: 383 ETMLKTGRLATQT-GLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRK 440
+ TG + + +D R G T RL+F+ + + + F R S R
Sbjct: 415 VNAISTGNWSLKRFKMD---RQGVTQVLSRLSFISALGMMTRI--SSQFEKTRKVSGPRS 469
Query: 441 LLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVG 500
L P WG LCP TP+GE CGL+ ++ + + + I+ + + +L G
Sbjct: 470 LQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIIKLAFNLGVEDVNLLCGEE 529
Query: 501 MIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGY 560
+ P+V V L+G ++GVI + +K+V R ++ A I + +
Sbjct: 530 L----------SYPSVFIVFLNGNILGVI--RDHQKLVGTFRLMR--RAGFINE-----F 570
Query: 561 VPLSLGGAYPGLYLFTSPPKFVRP--VRNISLPSEESQNIELIGP----FEQVFMEIRCP 614
V +S +Y+ + + RP + P ++++IE + FE F+
Sbjct: 571 VSISTNLTDRCVYISSDGGRLCRPYIIVKKGQPMVKNKHIEDLSQGYRNFED-FLHDGLV 629
Query: 615 DGGDGGRRNAFP-----------ATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMA 663
+ D N TH EI P +L V A L PY HNQSPRN YQC M
Sbjct: 630 EYLDVNEENDCQIALYEHMIHKDTTHLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMG 689
Query: 664 KQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYD 723
KQ MG + R D +Y L PQ P+V+T T ++ P G NA VAV++Y+GYD
Sbjct: 690 KQAMGTIGYNQRNRIDTLMYLLAYPQRPMVKTKTIEIIEFEKLPAGQNATVAVMSYSGYD 749
Query: 724 MEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKV-DR--GQKLFRRNKDAKSLHSVID 780
+EDA+ILNK+S+DRG +Y+ L N+ D+ G L + H+++D
Sbjct: 750 IEDALILNKASLDRGFGRCLVYKNSKCTLRRYTNQTFDKVMGPMLDAATRKPIWRHNILD 809
Query: 781 SDGLPYVGQ-------MIHPGEPYCSI--YDKTTNSWRTNSR------KGSESVFVDYVA 825
+DG+ G+ +++ P + + +T + + R KGS +++ V
Sbjct: 810 ADGICSPGERVENKQVLVNKSMPTVTQTPLEGSTQTGQPQYRDVPICYKGSTDSYIEKVM 869
Query: 826 VDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDL 885
+ K I R TR P IGDKFSSRHGQKGVC + P DMPF TG+ PD+
Sbjct: 870 ISSNAEDAFLIK--ILLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCD-TGICPDI 926
Query: 886 IINPHAFPSRMTIAMLLESVAAK 908
I+NPH +PSRMT+ L+E +A K
Sbjct: 927 IMNPHGYPSRMTVGKLIELLAGK 949
>gi|303287030|ref|XP_003062804.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226455440|gb|EEH52743.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 1197
Score = 269 bits (687), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 270/1030 (26%), Positives = 422/1030 (40%), Gaps = 229/1030 (22%)
Query: 9 FEPLRELVRHHIESFDYMLDEGLSEMF--------------------------------- 35
F +R LVR HI+SF+Y+++E + ++
Sbjct: 81 FLKVRGLVRQHIDSFNYLINEEIRKIIRAKANERVTCDTDPSFYLRYTNIHVGKPCVEED 140
Query: 36 --------DHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFN--------FGQFPVMLK 79
CR ++Y + D E+ G +V + N G+ P+ML+
Sbjct: 141 YIVEDITPQQCRLRDMTYAAPVTVDAEYTR---GKEIVTRKTNEQGVGGITIGRIPLMLR 197
Query: 80 TRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRR 139
+ RC L G +L L E + GGYF++ G+E+V V++ +Q +S R
Sbjct: 198 SSRCVLTGKSEDELARLGECPLDPGGYFVVKGVEKV---VLIQEQ---LSKNRIIIDVDA 251
Query: 140 EGYTDKAVVIRC-VRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYL--------LPVGIVL 190
+G +V RK ++++ +K GK YL +P+ + L
Sbjct: 252 KGEIGASVTSSTHERKSKTNIVVK---------------HGKLYLRHNTFVEDVPILVAL 296
Query: 191 KALVDTNDLEIFNHLTCCYDEKYKKEKGAVG-SPLVSERVKIILAEVQDLSLTTRLQCLQ 249
KA+ +D E+ VG P + + L E L++ T+ Q L+
Sbjct: 297 KAMGTESDQEVVQ---------------LVGPDPAYANLLIPSLQECSALAIFTQQQALE 341
Query: 250 HIGEHF--QPVIDGLQ----SESYYAVAETVIRDYIFVHLN----DNNDKFNLLIFMLQK 299
+ G Q + G Q + A ++ + H+ D K + M+++
Sbjct: 342 YCGAKVRTQSRMGGYQYGRNRRNRVDEARDILAGVVLAHVPVVAYDFRGKCAYVAVMIRR 401
Query: 300 -LFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLE----DWLRKGKKLIQDEIENN 354
L +++D T + D+ D N+ + L G L+ + ++ + D R+ ++ N
Sbjct: 402 ILHAMIDRTQI-DDKDYYGNKRLELAGQLLALLFEDCFKRLNADLKRQADAVLSKS--NR 458
Query: 355 GKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNF 414
+FD I++ N + +S +K R+ +R G T RL+F
Sbjct: 459 ATQFDIIKC--IRQDTLSNGLEHAISSGNWTVKRFRM---------ERKGVTQVLSRLSF 507
Query: 415 LRFISFFRAVHRGASFAGLRTTS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVA 473
+ + + + F R S R L P WG LCP TP+GE CGL+ ++ V
Sbjct: 508 ISALGMMTRIT--SQFEKTRKVSGPRALQPSQWGMLCPSDTPEGESCGLVKNLALMTHVT 565
Query: 474 SYYDSRGNIRDFS-KMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSS 532
+ D +R + + T L ++ G + P V L+G ++GV +
Sbjct: 566 TD-DEEEPLRKLAFTLGTQPLSLICGAEL----------HAPGGAIVFLNGSILGVHSAP 614
Query: 533 E-IEKVVAHLRRL-KVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNIS- 589
+ + + +LRR+ KV E V + GG LY+ + + RP+ ++
Sbjct: 615 DRFARDMRYLRRIGKVG---------EFVSVHTTQGGR---LYIASDGGRVCRPLLIVAD 662
Query: 590 ---LPSEE---------------------------SQNIELIGPFEQVFMEIRCPDGGDG 619
L + E +NI I +E
Sbjct: 663 GEPLATREHLDELKAGRWGFNDFLKRGLVEYLDVNEENISYIALYENEITR--------- 713
Query: 620 GRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRAD 679
TH EI P ML V A + PY HNQSPRN YQC M KQ MG R D
Sbjct: 714 ------DHTHLEIEPFTMLGVCAGIIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLNRMD 767
Query: 680 QKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGM 739
+Y L PQ PIV+T T G D G NA VAV++Y+GYD+EDA+++NK+S+DRG
Sbjct: 768 TLMYLLVYPQKPIVKTKTIELIGYDRLGAGQNATVAVMSYSGYDIEDAIVMNKASLDRGF 827
Query: 740 CHGQIYQTETIDLSDDGNK-VDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYC 798
+ + + N+ +DR H ++D DG+ VG +I+PG+ Y
Sbjct: 828 GRCIVLRKYATQVKKYSNRTMDRIVAPTESQAGPTGRHRLLDRDGIASVGTLINPGDVYV 887
Query: 799 --------------------SIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKA 838
+ Y T S++ ES VD V + M + K
Sbjct: 888 NKQSPSNTRDPLPNPHAMPDTFYRPTPQSYKGPQ---GESCVVDKVMLTMTDEGVFNVKC 944
Query: 839 NIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTI 898
+ RHTR P +GDKFSSRHGQKGV + P D PFS G+ PDLI+NPH FPSRMT+
Sbjct: 945 LV--RHTRRPEVGDKFSSRHGQKGVIGTILPQRDFPFS-ERGITPDLIMNPHGFPSRMTV 1001
Query: 899 AMLLESVAAK 908
+LE V K
Sbjct: 1002 GKMLELVGGK 1011
>gi|194753345|ref|XP_001958974.1| GF12287 [Drosophila ananassae]
gi|190620272|gb|EDV35796.1| GF12287 [Drosophila ananassae]
Length = 1137
Score = 268 bits (686), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 252/935 (26%), Positives = 403/935 (43%), Gaps = 152/935 (16%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR +Y+ + D+E Y + R G+ P+ML+ C L G +L L
Sbjct: 110 CRLRDTTYSAPITVDIE--YTRGTQRIKRNNLLIGRMPLMLRCSNCVLTGKSEFELSKLN 167
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRC----VR 153
E + GGYF++ G E+V +++ +Q M+ F V++C
Sbjct: 168 ECPLDPGGYFVVRGQEKV---ILIQEQLSWNKMLTEDFNG----------VVQCQVTSST 214
Query: 154 KDQSSVTLKL-----YYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCC 208
++ S TL + YYL + S+ +P+ ++ KAL +D EI H+
Sbjct: 215 HEKKSRTLVISKHGKYYLKHNSMTDD---------IPIVVIFKALGVVSDQEIMAHIGI- 264
Query: 209 YDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYY 268
D K + GA L E +L + T+ + L ++G V+ QS +
Sbjct: 265 -DSKSQNRFGAS------------LLEAFNLKVFTQQRALDYMGSKL--VVKRFQSATTK 309
Query: 269 AVAET---VIRDYIFVHLNDNNDKFNL----LIFMLQKLFSLVDHTSVSDNPDSLQNQEI 321
AE ++ I H+ +N F + + M++++ + ++ D+ D N+ +
Sbjct: 310 TPAEEARELLLTTILAHVPVDNFNFQMKAIYVSMMVRRVMAAELDKTLFDDRDYYGNKRL 369
Query: 322 LLPGHLITIYLKEKLEDWLRKGKKLIQDEIEN-NGKKFDFFNLANIKKVMEKNPSKQIGT 380
L G LI++ ++ + + K + I +FD V++ + QI
Sbjct: 370 ELAGSLISLMFEDLFKRMNWELKTIADKNIPKVKAAQFD---------VVKHMRAAQITA 420
Query: 381 SIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VR 439
+E+ + +G + +RAG T RL+++ + V+ + F R S R
Sbjct: 421 GLESAISSGNWTIKRFK--MERAGVTQVLSRLSYISALGMMTRVN--SQFEKTRKVSGPR 476
Query: 440 KLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGV 499
L P WG LCP TP+GE CGL+ ++ + + + + +L GV
Sbjct: 477 SLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTEVEEKP---------VMVLAFNAGV 527
Query: 500 GMIPSLPKLVKSGP---PAVLSVLLDGRVVGV-IPSSEIEKVVAHLRRLKVSAASVIPDD 555
I + V P P V V ++G V+G+ + + K + ++RR +
Sbjct: 528 EDI----REVSGNPINNPNVFLVFINGNVLGLTLNHRHLVKNLRYMRRKGRMGS------ 577
Query: 556 LEVGYVPLSLGGAYPGLYLFTSPPKFVRP---VRNISLPSEESQNIEL---IGPFEQVFM 609
YV + +Y+ T + RP V ++ EL I F+ +
Sbjct: 578 ----YVSVHTSYTQRCIYIHTDGGRLCRPYIIVEKCRPLVKQHHLDELNRGIRKFDDFLL 633
Query: 610 EIRCPDGGDGGRRNAFPA----------THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQ 659
+ ++F A TH EI P +L V A L PY HNQSPRN YQ
Sbjct: 634 DGLIEYLDVNEENDSFIAWNEEHIEERTTHLEIEPFTLLGVCAGLVPYPHHNQSPRNTYQ 693
Query: 660 CQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAY 719
C M KQ MG K R D +Y+L PQ P+V++ T D+ P G NA VAV++Y
Sbjct: 694 CAMGKQAMGMIGYNQKNRIDSLMYNLVYPQAPMVKSKTIELTNFDKLPAGQNATVAVMSY 753
Query: 720 TGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKV-DRGQKLFRRNKDAKSL--H 776
+GYD+EDA+ILNK+S+DRG +Y+ + N+ DR + K + H
Sbjct: 754 SGYDIEDALILNKASIDRGYGRCLVYKNSKCTVKRYANQTFDRIMGPVKDALTNKVIFKH 813
Query: 777 SVIDSDGLPYVGQMIH-----------------------PGEPYCSIYDKTTNSWRTNSR 813
V+D+DG+ G+M+ P PY ++ S
Sbjct: 814 DVLDTDGIVAPGEMVQNKQIMINKEMPAVTSMNPLDGQSPQVPYTAV---------PISY 864
Query: 814 KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDM 873
KG E +++ V V ++ K I R TR P IGDKFSSRHGQKGV + DM
Sbjct: 865 KGPEPSYIERVMVSANAEEDFLIK--ILLRQTRIPEIGDKFSSRHGQKGVTGLIVEQEDM 922
Query: 874 PFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
P++ + G+ PD+I+NPH FPSRMT+ LE + K
Sbjct: 923 PYNDL-GICPDMIMNPHGFPSRMTVGKTLELLGGK 956
>gi|426193713|gb|EKV43646.1| hypothetical protein AGABI2DRAFT_188003 [Agaricus bisporus var.
bisporus H97]
Length = 1142
Score = 268 bits (686), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 255/990 (25%), Positives = 422/990 (42%), Gaps = 159/990 (16%)
Query: 9 FEPLRELVRHHIESFDYMLDEGLSEMFD-------------------------------- 36
F ++ LV+ HI+SF+Y +D L +
Sbjct: 40 FLKVKGLVKQHIDSFNYFVDVDLKNIVKANNKITSDVDPRFWLKYVDINVGFPDRNEMET 99
Query: 37 --------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGA 88
CR +Y+ ++ +++ G +V+ N G+ P+ML++ +C L G
Sbjct: 100 VEKKVTPHECRLRDTTYSAPIIVTIQYT---RGKNIVQRNVNIGRLPIMLRSNKCVLTGR 156
Query: 89 DSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVV 148
+L + E + GGYF++ G E+V +++ +Q ++ + D +G V
Sbjct: 157 TEAQLARMSECPLDPGGYFVVKGTEKV---ILVQEQLSKNRIIVET--DNVKG----VVQ 207
Query: 149 IRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYL--------LPVGIVLKALVDTNDLE 200
C + K Y +G+ YL LP+ I LKAL +D E
Sbjct: 208 ASCTSSTHGGLKSKTYVATK---------KGRIYLRHNSIHEDLPIVIALKALGVQSDKE 258
Query: 201 IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQ--PV 258
I LT E YK A L + L + TR Q L++IG +
Sbjct: 259 IL-LLTAGNTEAYKIAFSAN------------LEDAAKLGIFTRQQALEYIGTRVKVNRR 305
Query: 259 IDGLQSESYYAVAE---TVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDS 315
+ G + ++ E T++ ++ V+ D K + M +++ ++ ++ D+ D
Sbjct: 306 VVGPRRPAWEEALEALATIVLAHVPVNGLDLRPKAIFVATMTRRVLMAMNDENMVDDRDY 365
Query: 316 LQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGK--KFDFFNLANIKKVMEKN 373
+ N+ + L G L+ + ++ + + K I ++ + +FD +N +
Sbjct: 366 VGNKRLELAGQLLALLFEDLFKTYNSNLKSAIDKVLKKPSRTTEFDAYNTMQFQ------ 419
Query: 374 PSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGL 433
+ + TG + + +RAG T RL+F+ + + + F
Sbjct: 420 -GDHLTAGFVRAISTGNWSLKRFK--MERAGVTHVLSRLSFISALGMMTRI--SSQFEKT 474
Query: 434 RTTS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSI 492
R S R L P WG LCP TP+GE CGL+ ++ + + + I+
Sbjct: 475 RKVSGPRALQPSQWGVLCPSDTPEGEACGLVKNLALMTHITTDVEEEPIIQ--------- 525
Query: 493 LRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVI 552
L ++GV I L + P V ++G ++G+ + + V+ R+L+ +
Sbjct: 526 LAFMLGVEDI-RLATGTEIYGPNTFVVNVNGTIIGL--TRHPMRFVSQFRKLRRARRFS- 581
Query: 553 PDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPV------RNISLPSEESQNIELIGPFEQ 606
+V + + + +++ + + RP+ R+ P + + F+
Sbjct: 582 ------EFVSIYVNHHHRTVHIASDGGRICRPMIIVEHGRSKVTPEHATHLKDGTATFDD 635
Query: 607 VFMEIRCPDGGDGGRRN-AFPA----------THEEIHPTGMLSVVANLTPYSDHNQSPR 655
F+ + D N + A TH EI P +L VA L PY HNQSPR
Sbjct: 636 -FLRKGVVEYLDVNEENDTYIALYESDITPHTTHLEIEPFTLLGAVAGLIPYPHHNQSPR 694
Query: 656 NMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVA 715
N YQC M KQ +G R D LY PQ P+V+T T G D+ P G NA VA
Sbjct: 695 NTYQCAMGKQAIGAIGYNQFNRIDTLLYLSVYPQQPMVKTKTIELIGYDKLPAGQNATVA 754
Query: 716 VLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKV-DR-GQKLFRRNKDAK 773
V++Y+GYD+EDA+ILNK+S+DRG Q+ + + N DR N
Sbjct: 755 VMSYSGYDIEDALILNKASLDRGYGRCQVLRKNATLIRKYPNGTYDRLADAPIDENGMTA 814
Query: 774 SLHSVIDSDGLPYVGQMIHPGEPYC---SIYDKTTNSWRTNSR-----------KGSESV 819
+ +I DGL VG+ + PG+ Y S + + NS+ + K +
Sbjct: 815 KRYDIIQPDGLAGVGERVDPGDIYVNKQSPTNASDNSFTGQAASVPYKNTPLTYKSPVAG 874
Query: 820 FVDYVAV-DMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGV 878
++D V V D +N + L + + R TR P +GDKFSSRHGQKGVC + DMPF+
Sbjct: 875 YIDKVMVTDTENEQTLIK---VLIRQTRRPELGDKFSSRHGQKGVCGLIVNQEDMPFND- 930
Query: 879 TGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
G+ PD I+NPH FPSRMT+ ++E +A K
Sbjct: 931 QGINPDTIMNPHGFPSRMTVGKMIELLAGK 960
>gi|47219788|emb|CAG03415.1| unnamed protein product [Tetraodon nigroviridis]
Length = 1171
Score = 268 bits (686), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 250/924 (27%), Positives = 411/924 (44%), Gaps = 129/924 (13%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR ++Y+ + D+E Y ++R G+ P+ML++ C L G + L
Sbjct: 131 CRLRDMTYSAPITVDIE--YTRGSQRIIRNALPIGRMPIMLRSSNCVLTGKTPMEFAKLN 188
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRC-VRKDQ 156
E + GGYFI+ G E+V +++ +Q +S R R+G +V +K +
Sbjct: 189 ECPLDPGGYFIVKGQEKV---ILIQEQ---LSKNRIIVDQDRKGAVGASVTSSTHEKKSR 242
Query: 157 SSVTLKLYYLLNGSVRLGFWLQGKEYL--------LPVGIVLKALVDTNDLEIFNHLTCC 208
+++ +K QG+ YL P+ I+ K + +D EI +
Sbjct: 243 TNMIVK---------------QGRFYLRHNTLSEDAPIAIIFKGMGVESDQEIVQMIG-- 285
Query: 209 YDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQ-PVIDGLQSESY 267
E+ + S S L E Q + T+ Q L+++G + + G ++
Sbjct: 286 ------TEENVMASFAPS------LEECQKAQIFTQTQALRYLGNKVRRQRMWGGPKKTK 333
Query: 268 YAVAETVIRDYIFVHLNDNNDKFN----LLIFMLQKLFSLVDHTSVSDNPDSLQNQEILL 323
A ++ I H+ F L M++++ L + D+ D N+ + L
Sbjct: 334 MEEARELLASLILTHVPVKEFNFRAKCIYLAVMVRRVI-LAQGDNKVDDRDYYGNKRLEL 392
Query: 324 PGHLITIYLKEKLEDWLRKGKKLIQDEI--ENNGKKFDFFNLANIKKVMEKNPSKQIGTS 381
G L+++ ++ + + + KK I D+I + +FD V++ QI
Sbjct: 393 AGQLLSLLFEDLFKKFNSELKK-IADQIIPKQRAAQFD---------VVKHMRQDQITNG 442
Query: 382 IETMLKTGRLATQT-GLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VR 439
+ + TG + + +D R G T RL+F+ + + + F R S R
Sbjct: 443 MVNAISTGNWSLKRFKMD---RQGVTQVLSRLSFISALGMMTRI--SSQFEKTRKVSGPR 497
Query: 440 KLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGV 499
L P WG LCP TP+GE CGL+ ++ + + + I+ + + +L G
Sbjct: 498 SLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIIKLAFNLGVEDVNLLCGE 557
Query: 500 GMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVG 559
+ P+V V L+G ++GVI + +K+V R ++ A I +
Sbjct: 558 EL----------SYPSVFLVFLNGNILGVI--RDHQKLVGTFRLMR--RAGFINE----- 598
Query: 560 YVPLSLGGAYPGLYLFTSPPKFVRP--VRNISLPSEESQNIELIGP----FEQVFMEIRC 613
+V +S +Y+ + + RP + P +++++E + FE F+
Sbjct: 599 FVSISTNLTDRCVYISSDGGRLCRPYIIVKKGQPMVKNKHMEDLSQGYRNFED-FLHDGL 657
Query: 614 PDGGDGGRRNAFP-----------ATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQM 662
+ D N TH EI P +L V A L PY HNQSPRN YQC M
Sbjct: 658 VEYLDVNEENDCQIALYEHMIHKDTTHLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAM 717
Query: 663 AKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGY 722
KQ MG + R D +Y L PQ P+V+T T ++ P G NA VAV++Y+GY
Sbjct: 718 GKQAMGTIGYNQRNRIDTLMYLLAYPQRPMVKTKTIEIIEFEKLPAGQNATVAVMSYSGY 777
Query: 723 DMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKV-DR--GQKLFRRNKDAKSLHSVI 779
D+EDA+ILNK+S+DRG +Y+ L N+ D+ G L + H+++
Sbjct: 778 DIEDALILNKASLDRGFGRCLVYKNTKCTLRRYTNQTFDKVMGPMLDAATRKPIWRHNIL 837
Query: 780 DSDGLPYVGQ-------MIHPGEPYCSI--YDKTTNSWRTNSR------KGSESVFVDYV 824
D+DG+ G+ +++ P + + +T + + R KGS +++ V
Sbjct: 838 DADGICSPGERVENKQVLVNKSMPTVTQTPLEGSTQTGQPQYRDVPICYKGSTDSYIEKV 897
Query: 825 AVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPD 884
+ K I R TR P IGDKFSSRHGQKGVC + P DMPF TG+ PD
Sbjct: 898 MISSNAEDAFLIK--ILLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCD-TGICPD 954
Query: 885 LIINPHAFPSRMTIAMLLESVAAK 908
+I+NPH +PSRMT+ L+E +A K
Sbjct: 955 IIMNPHGYPSRMTVGKLIELLAGK 978
>gi|409075839|gb|EKM76215.1| hypothetical protein AGABI1DRAFT_122788 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 1142
Score = 268 bits (685), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 256/990 (25%), Positives = 422/990 (42%), Gaps = 159/990 (16%)
Query: 9 FEPLRELVRHHIESFDYMLDEGLSEMFD-------------------------------- 36
F ++ LV+ HI+SF+Y +D L +
Sbjct: 40 FLKVKGLVKQHIDSFNYFVDVDLKNIVKANNKITSDVDPRFWLKYVDINVGFPDRNEMET 99
Query: 37 --------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGA 88
CR +Y+ ++ +++ G +V+ N G+ P+ML++ +C L G
Sbjct: 100 VEKKVTPHECRLRDTTYSAPIIVTIQYT---RGKNIVQRNVNIGRLPIMLRSNKCVLTGR 156
Query: 89 DSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVV 148
+L + E + GGYF++ G E+V +++ +Q ++ + D +G V
Sbjct: 157 TEAQLARMSECPLDPGGYFVVKGTEKV---ILVQEQLSKNRIIVET--DNVKG----VVQ 207
Query: 149 IRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYL--------LPVGIVLKALVDTNDLE 200
C + K Y +G+ YL LP+ I LKAL +D E
Sbjct: 208 ASCTSSTHGGLKSKTYVATK---------KGRIYLRHNSIHEDLPIVIALKALGVQSDKE 258
Query: 201 IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQP--V 258
I LT E YK A L + L + TR Q L++IG +
Sbjct: 259 IL-LLTAGNTEAYKIAFSAN------------LEDAAKLGIFTRQQALEYIGTRVKVNRR 305
Query: 259 IDGLQSESYYAVAE---TVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDS 315
+ G + ++ E T++ ++ V+ D K + M +++ ++ ++ D+ D
Sbjct: 306 VVGPRRPAWEEALEALATIVLAHVPVNGLDLRPKAIFVATMTRRVLMAMNDENMVDDRDY 365
Query: 316 LQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGK--KFDFFNLANIKKVMEKN 373
+ N+ + L G L+ + ++ + + K I ++ + +FD +N +
Sbjct: 366 VGNKRLELAGQLLALLFEDLFKTYNSNLKSAIDKVLKKPSRTTEFDAYNTMQFQ------ 419
Query: 374 PSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGL 433
+ + TG + + +RAG T RL+F+ + + + F
Sbjct: 420 -GDHLTAGFVRAISTGNWSLKRFK--MERAGVTHVLSRLSFISALGMMTRI--SSQFEKT 474
Query: 434 RTTS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSI 492
R S R L P WG LCP TP+GE CGL+ ++ + + + I+
Sbjct: 475 RKVSGPRALQPSQWGVLCPSDTPEGEACGLVKNLALMTHITTDVEEEPIIQ--------- 525
Query: 493 LRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVI 552
L ++GV I L + P V ++G ++G+I + V+ R+L+ +
Sbjct: 526 LAFMLGVEDI-RLATGTEIYGPNTFVVNVNGTIIGLI--RHPMRFVSQFRKLRRARRFS- 581
Query: 553 PDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPV------RNISLPSEESQNIELIGPFEQ 606
+V + + + +++ + + RP+ R+ P + + F+
Sbjct: 582 ------EFVSIYVNHHHRTVHIASDGGRICRPMIIVEHGRSKVTPEHATYLKDGTATFDD 635
Query: 607 VFMEIRCPDGGDGGRRN-AFPA----------THEEIHPTGMLSVVANLTPYSDHNQSPR 655
F+ + D N + A TH EI P +L VA L PY HNQSPR
Sbjct: 636 -FLRKGVVEYLDVNEENDTYIALYESDITPHTTHLEIEPFTLLGAVAGLIPYPHHNQSPR 694
Query: 656 NMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVA 715
N YQC M KQ +G R D LY PQ P+V+T T G D+ P G NA VA
Sbjct: 695 NTYQCAMGKQAIGAIGYNQFNRIDTLLYLSVYPQQPMVKTKTIELIGYDKLPAGQNATVA 754
Query: 716 VLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKV-DR-GQKLFRRNKDAK 773
V++Y+GYD+EDA+ILNK+S+DRG Q+ + + N DR N
Sbjct: 755 VMSYSGYDIEDALILNKASLDRGYGRCQVLRKNATLIRKYPNGTYDRLADAPVDENGMTA 814
Query: 774 SLHSVIDSDGLPYVGQMIHPGEPYC---SIYDKTTNSWRTNSR-----------KGSESV 819
+ +I DGL VG+ + PG+ Y S + + NS+ + K +
Sbjct: 815 KRYDIIQPDGLAGVGERVDPGDIYVNKQSPTNASDNSFTGQAASVPYKNTPLTYKSPVAG 874
Query: 820 FVDYVAV-DMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGV 878
++D V V D +N + L + + R TR P +GDKFSSRHGQKGVC + DMPF+
Sbjct: 875 YIDKVMVTDTENEQTLIK---VLIRQTRRPELGDKFSSRHGQKGVCGLIVNQEDMPFND- 930
Query: 879 TGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
G+ PD I+NPH FPSRMT+ ++E +A K
Sbjct: 931 QGINPDTIMNPHGFPSRMTVGKMIELLAGK 960
>gi|389743088|gb|EIM84273.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Stereum hirsutum FP-91666 SS1]
Length = 1141
Score = 268 bits (684), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 265/1000 (26%), Positives = 422/1000 (42%), Gaps = 178/1000 (17%)
Query: 9 FEPLRELVRHHIESFDYMLDEGLSEMF--------------------------------- 35
F ++ LV+ HI+SF+Y +D + +
Sbjct: 40 FLKVKGLVKQHIDSFNYFVDVDIKNILKANNKVTSDVDPRFWLKYTDIRVGFPDRTDADA 99
Query: 36 -------DHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGA 88
+ CR +Y+ ++ V QY + V R N G+ P+ML++ +C L G
Sbjct: 100 IDKSVTPNECRLRDTTYSAPIV--VTIQYTRGKNVVRRPNVNIGRLPIMLRSNKCVLTGR 157
Query: 89 DSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVV 148
+L + E + GGYF++ G E+V IL ++ S R E K VV
Sbjct: 158 SEAQLARMIECPLDPGGYFVVKGTEKV----ILVQEQL------SKNRIIVETDPVKGVV 207
Query: 149 -IRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYL--------LPVGIVLKALVDTNDL 199
C + K Y +GK YL +P+ I LKAL +D
Sbjct: 208 QASCTSSTHGGLKSKTYVATK---------KGKIYLRHNSIHEDVPIVIALKALGIQSDK 258
Query: 200 EIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQ--P 257
EI LT E YK + L + L + TR Q L+ IG +
Sbjct: 259 EIL-LLTAGNSEAYK------------DSFAPNLEDAARLGIFTRHQALEWIGSRVKINR 305
Query: 258 VIDGLQSESYYAVAE---TVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPD 314
I G++ ++ E T++ ++ V D K + M +++ V + D+ D
Sbjct: 306 RIVGVRRPAWEEALEALATIVLAHVPVVGMDFRSKAIFVATMTRRVLMAVKDEKMVDDRD 365
Query: 315 SLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGK--KFDFFNLANIKKVMEK 372
+ N+ + L G L+ + ++ + + K I ++ + +FD FN +
Sbjct: 366 YVGNKRLELAGQLLALLFEDLFKTFNTNLKSSIDKVLKKPSRTTEFDAFNTMQFQ----- 420
Query: 373 NPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAG 432
I + + TG + + RAG T RL+F+ + + + F
Sbjct: 421 --GDHITSGFVRAISTGNWSLKRFR--MDRAGVTHVLSRLSFISALGMMTRI--SSQFEK 474
Query: 433 LRTTS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTS 491
R S R L P WG LCP TP+GE CGL+ ++ + + D I+
Sbjct: 475 TRKVSGPRALQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDVDEEPIIK-------- 526
Query: 492 ILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGV--IPSSEIEKVVAHLRRLKVSAA 549
+ ++GV I GP + V ++G ++G+ P+ + V + RRL+ A
Sbjct: 527 -VAYMLGVENIGQSTGTEIYGPNTFV-VNVNGTIIGLTRFPT----RFVHNFRRLR--RA 578
Query: 550 SVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRP--VRNISLPSEESQNIELIGPFE-- 605
+ + +V + + + + + + + RP + + P S+++ L+ +
Sbjct: 579 GRVSE-----FVSVYINHHHHTVNIASDGGRICRPMIIVDNGRPMVTSEHVSLLKKAKLE 633
Query: 606 -QVFMEIRCPDGGDGGRRN-AFPA----------THEEIHPTGMLSVVANLTPYSDHNQS 653
F+ + D N ++ A TH EI P +L VA L PY HNQS
Sbjct: 634 FDDFLRQGLVEYLDVNEENDSYIALYEPDIVPTTTHLEIEPFTLLGAVAGLIPYPHHNQS 693
Query: 654 PRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAI 713
PRN YQC M KQ +G R D LY PQ P+V+T T G D+ P G NA
Sbjct: 694 PRNTYQCAMGKQAIGAIGYNQLNRIDTLLYLSVYPQQPMVKTKTIELVGYDKLPAGQNAT 753
Query: 714 VAVLAYTGYDMEDAMILNKSSVDRGMCHGQI----------YQTETIDLSDDGNKVDRGQ 763
VAV++Y+GYD+EDA+ILNK+SVDRG Q+ Y T D D + G
Sbjct: 754 VAVMSYSGYDIEDALILNKASVDRGYGRCQVLRKNATLIRKYPNGTFDRLADAPTDEEG- 812
Query: 764 KLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVF--- 820
+ + + ++ DGL VG+ + PG+ Y + T + T + + + +
Sbjct: 813 -------NVQKKYDIVQLDGLAGVGERVDPGDVYVNKQTPTNANDNTFTGQAASVPYKNA 865
Query: 821 -----------VDYVAV-DMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLW 868
VD + + D +N + L + + R TR P +GDKFSSRHGQKGVC +
Sbjct: 866 PMTYKSPVAGHVDKIMISDTENDQTLIK---VLIRQTRRPELGDKFSSRHGQKGVCGLIV 922
Query: 869 PDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
DMPF+ G+ PD I+NPH FPSRMT+ ++E +A K
Sbjct: 923 NQEDMPFND-QGIVPDTIMNPHGFPSRMTVGKMIELLAGK 961
>gi|85083820|ref|XP_957195.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Neurospora
crassa OR74A]
gi|7800864|emb|CAB91222.1| probable DNA-directed RNA polymerase III second-largest chain
[Neurospora crassa]
gi|28918282|gb|EAA27959.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Neurospora
crassa OR74A]
Length = 1155
Score = 268 bits (684), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 243/914 (26%), Positives = 404/914 (44%), Gaps = 99/914 (10%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR ++Y + +V+ Y + +VR+ + PVMLK+ +C+L GA + ++
Sbjct: 110 CRLRDLTYAAPV--EVDIAYTRDKNVIVRKNIPLCRIPVMLKSAKCYLNGATNAQMEVFN 167
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
E + GGYF++ G E+V IL ++ + + ++ G RK ++
Sbjct: 168 ECPLDPGGYFVIGGTEKV----ILIQEQLSKNRIIVEADEKTGGVMASVTSSTHERKSKT 223
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
V LK R+ +P+ IVLKA +D +I L C D +Y+ +
Sbjct: 224 YVVLK-------KDRIVLQHNTLSEPIPIVIVLKAFGGLSDNDII-ELVCGGDARYQDD- 274
Query: 218 GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQ-----PVIDGLQSESYYAVAE 272
I E + T+ Q L+++G + P ++
Sbjct: 275 -----------FLINFDEAGRAGVYTQQQALEYVGARVKMGGNRPKFGAAPRRNHAEEGL 323
Query: 273 TVIRDYIFVHLN----DNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLI 328
+ + + H+ D K + M++++ + + D+ D + N+ + L G LI
Sbjct: 324 DALANLVIAHVTVEGLDFYPKAVYIAMMVRRVLMAAQNPKLVDDRDFVGNKRLELAGQLI 383
Query: 329 TIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKT 388
++ ED +K ++ I+N KK + + + + N I + +++
Sbjct: 384 SLLF----EDLFKKFISDVKYNIDNFFKKPNRTSTYDPHGAIMAN-GHYISHGLNRAIQS 438
Query: 389 GRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLLPESWG 447
G + ++ RAG T RL+++ + + + F R S R L P WG
Sbjct: 439 GNWTVKR-FNMN-RAGITHVLSRLSYIAALGMMTRI--SSQFEKTRKVSGPRALQPSQWG 494
Query: 448 FLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPK 507
LC TP+GE CGL+ ++ + + N+ + ++ I VG I
Sbjct: 495 MLCTSDTPEGEACGLVKNLALMTHITT------NVPE-EPVKKMIFAADESVGPIREYTG 547
Query: 508 LVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGG 567
+ + + L+G V + E ++ A R L+ V P +V + +
Sbjct: 548 TEMHSKGSYI-IHLNGTPFAV--TREPKRFAARFRTLR-RRGWVSP------FVSIHINE 597
Query: 568 AYPGLYLFTSPPKFVRP---VRNIS--LPSEESQNIELIGPFEQVFMEIRCPDGGDGGRR 622
+ +++ T + RP V+N L +E + ++L F+ + D
Sbjct: 598 HFSAVHIATDEGRICRPYIIVKNGKSMLKAEHLKMLQLGQATFDTFLTSGVVEYLDVNEE 657
Query: 623 N-----------AFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSV 671
N TH EI P +L VA L P+ HNQSPRN YQC M KQ +G
Sbjct: 658 NDTLVALQEDQITNSTTHMEIEPFTILGAVAGLIPFPHHNQSPRNTYQCAMGKQAIGAIA 717
Query: 672 QALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILN 731
R D LY L PQ P+V T T D+ P G NA V V++Y+GYD+EDA++LN
Sbjct: 718 YNQFNRIDTLLYTLVYPQRPMVITKTIQLIHYDKLPAGQNATVVVMSYSGYDIEDALVLN 777
Query: 732 KSSVDRGMCHGQIYQTETIDLSDDGN-KVDRGQKLFRRNKDAKSL-HSVIDSDGLPYVGQ 789
K+S+DRG Q+++ T +L N + DR + + D + H+++D+DGL VG
Sbjct: 778 KASLDRGFGRCQVFRKYTAELQGYTNGRRDRVGGIMKDEDDKPIVKHAILDADGLAQVGS 837
Query: 790 MIHPGE-------PYCSIY-----DKTTNSWR---TNSRKGSESVFVDYVAVDMKNSKNL 834
+ G+ P I D+ ++ +R TN R S+ +D V + + +N
Sbjct: 838 KVESGQTMIKKETPLDQISTGIAGDRGSDDYRDASTNYRI-SDPAIIDKVMISVNEREN- 895
Query: 835 PQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPS 894
+ ++ R TR P +GDKFSSRHGQKGV + + DMPFS G+RPD+I+NPH FPS
Sbjct: 896 -KLIKVQTRQTRRPELGDKFSSRHGQKGVVGIIVNEEDMPFSD-KGLRPDIIMNPHGFPS 953
Query: 895 RMTIAMLLESVAAK 908
RMT+ L E + K
Sbjct: 954 RMTVGKLFECLTGK 967
>gi|336468399|gb|EGO56562.1| hypothetical protein NEUTE1DRAFT_83883 [Neurospora tetrasperma FGSC
2508]
gi|350289345|gb|EGZ70570.1| putative DNA-directed RNA polymerase III second-largest chain
[Neurospora tetrasperma FGSC 2509]
Length = 1155
Score = 268 bits (684), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 243/914 (26%), Positives = 404/914 (44%), Gaps = 99/914 (10%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR ++Y + +V+ Y + +VR+ + PVMLK+ +C+L GA + ++
Sbjct: 110 CRLRDLTYAAPV--EVDIAYTRDKNVIVRKNIPLCRIPVMLKSAKCYLNGATNAQMEVFN 167
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
E + GGYF++ G E+V IL ++ + + ++ G RK ++
Sbjct: 168 ECPLDPGGYFVIGGTEKV----ILIQEQLSKNRIIVEADEKTGGVMASVTSSTHERKSKT 223
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
V LK R+ +P+ IVLKA +D +I L C D +Y+ +
Sbjct: 224 YVVLK-------KDRIVLQHNTLSEPIPIVIVLKAFGGLSDNDII-ELVCGGDARYQDD- 274
Query: 218 GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQ-----PVIDGLQSESYYAVAE 272
I E + T+ Q L+++G + P ++
Sbjct: 275 -----------FLINFDEAGRAGVYTQQQALEYVGARVKMGGNRPKFGAAPRRNHAEEGL 323
Query: 273 TVIRDYIFVHLN----DNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLI 328
+ + + H+ D K + M++++ + + D+ D + N+ + L G LI
Sbjct: 324 DALANLVIAHVTVEGLDFYPKAVYIAMMVRRVLMAAQNPKLVDDRDFVGNKRLELAGQLI 383
Query: 329 TIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKT 388
++ ED +K ++ I+N KK + + + + N I + +++
Sbjct: 384 SLLF----EDLFKKFISDVKYNIDNFFKKPNRTSTYDPHGAIMAN-GHYISHGLNRAIQS 438
Query: 389 GRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLLPESWG 447
G + ++ RAG T RL+++ + + + F R S R L P WG
Sbjct: 439 GNWTVKR-FNMN-RAGITHVLSRLSYIAALGMMTRI--SSQFEKTRKVSGPRALQPSQWG 494
Query: 448 FLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPK 507
LC TP+GE CGL+ ++ + + N+ + ++ I VG I
Sbjct: 495 MLCTSDTPEGEACGLVKNLALMTHITT------NVPE-EPVKKMIFAADESVGPIREYTG 547
Query: 508 LVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGG 567
+ + + L+G V + E ++ A R L+ V P +V + +
Sbjct: 548 TEMHSKGSYI-IHLNGTPFAV--TREPKRFAARFRTLR-RRGWVSP------FVSIHINE 597
Query: 568 AYPGLYLFTSPPKFVRP---VRNIS--LPSEESQNIELIGPFEQVFMEIRCPDGGDGGRR 622
+ +++ T + RP V+N L +E + ++L F+ + D
Sbjct: 598 HFSAVHIATDEGRICRPYIIVKNGKSMLKAEHLKMLQLGQATFDTFLTSGVVEYLDVNEE 657
Query: 623 N-----------AFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSV 671
N TH EI P +L VA L P+ HNQSPRN YQC M KQ +G
Sbjct: 658 NDTLVALQEDQITNSTTHMEIEPFTILGAVAGLIPFPHHNQSPRNTYQCAMGKQAIGAIA 717
Query: 672 QALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILN 731
R D LY L PQ P+V T T D+ P G NA V V++Y+GYD+EDA++LN
Sbjct: 718 YNQFNRIDTLLYTLVYPQRPMVITKTIQLIHYDKLPAGQNATVVVMSYSGYDIEDALVLN 777
Query: 732 KSSVDRGMCHGQIYQTETIDLSDDGN-KVDRGQKLFRRNKDAKSL-HSVIDSDGLPYVGQ 789
K+S+DRG Q+++ T +L N + DR + + D + H+++D+DGL VG
Sbjct: 778 KASLDRGFGRCQVFRKYTAELQGYTNGRRDRVGGIMKDEDDKPIVKHAILDADGLAQVGS 837
Query: 790 MIHPGE-------PYCSIY-----DKTTNSWR---TNSRKGSESVFVDYVAVDMKNSKNL 834
+ G+ P I D+ ++ +R TN R S+ +D V + + +N
Sbjct: 838 KVESGQTMIKKETPLDQISTGIAGDRGSDDYRDASTNYRI-SDPAIIDKVMISVNEREN- 895
Query: 835 PQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPS 894
+ ++ R TR P +GDKFSSRHGQKGV + + DMPFS G+RPD+I+NPH FPS
Sbjct: 896 -KLIKVQTRQTRRPELGDKFSSRHGQKGVVGIIVNEEDMPFSD-KGLRPDIIMNPHGFPS 953
Query: 895 RMTIAMLLESVAAK 908
RMT+ L E + K
Sbjct: 954 RMTVGKLFECLTGK 967
>gi|320165828|gb|EFW42727.1| polymerase III polypeptide B [Capsaspora owczarzaki ATCC 30864]
Length = 1138
Score = 267 bits (683), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 254/917 (27%), Positives = 403/917 (43%), Gaps = 112/917 (12%)
Query: 37 HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
CR ++Y + +VE Y+ +VR+ G+ P+ML++ C L G +L L
Sbjct: 108 QCRLRDMTYAAPITVNVE--YMRGSQKIVRDNLFIGRMPIMLRSSNCILHGKSRAELTKL 165
Query: 97 KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCV-RKD 155
E + GGYFI+ G+E+V +++ +Q +S R + R+G +V RK
Sbjct: 166 GECPNDPGGYFIIKGVEKV---ILIQEQ---LSKNRMIIENDRKGIPGASVTSSTQERKS 219
Query: 156 QSSVTLKL--YYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKY 213
+++V K +YL + ++ + V I+ KAL D EI + +++ Y
Sbjct: 220 RTNVVCKAGRFYLKHNTLSED---------INVVILFKALGVETDQEIMQMIG--FEDMY 268
Query: 214 KKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAE- 272
++ A AE + +TT+ Q L +G + V E
Sbjct: 269 QQAIAAT------------FAESIEHGITTQNQALDFVGSRVRLAKRAWGGARKSKVDEA 316
Query: 273 -----TVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHL 327
++I ++ VH + K L M++++ ++ D+ D N+ + L G L
Sbjct: 317 RELLASIILAHVPVHKYNFRPKSLYLALMVRRVILALNEALPVDDKDYYGNKRLELAGQL 376
Query: 328 ITIYLKEKLEDWLRKGKKLIQDEI-ENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETML 386
+ + ++ + + + KK+ I + ++D V++K + I + +
Sbjct: 377 LALLFEDVFKKFNTELKKVTDLTIPKQRATQYD---------VVKKFRPQIISDGLTHAI 427
Query: 387 KTGRLATQT-GLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLLPE 444
TG + +D R G T RL+++ + + + F R S R L P
Sbjct: 428 STGNWTVKRFKMD---RGGVTQVLSRLSYISALGMMTRI--SSQFEKTRKVSGPRSLQPS 482
Query: 445 SWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPS 504
WG LCP TP+GE CGL+ ++ + + D NI + L GV I
Sbjct: 483 QWGMLCPSDTPEGEACGLVKNLALMTHITTD-DEESNI--------ARLAFNFGVEDINV 533
Query: 505 LPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSA-----ASVIPDDLEVG 559
L + + L V L+G ++GV I +V R L+ S+ P+D +
Sbjct: 534 LSAEDLTRDESYL-VFLNGLLLGVTIHPTI--LVRAFRMLRRDGRLSHFLSICPNDRQRC 590
Query: 560 YVPLSLGG--AYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGG 617
S GG P + + + PK V N L + + + +E +
Sbjct: 591 VYIASDGGRVCRPYIIVDKNGPK----VTNTHLERLAQKVLRFDDFLKLGLIEYLDVNEE 646
Query: 618 DGGRRNAFPA------THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSV 671
+G + + TH EI P +L V A + PY HNQSPRN YQC M KQ +G
Sbjct: 647 NGANIAMYESEIKPYTTHLEIEPFTILGVCAGIIPYPHHNQSPRNTYQCAMGKQAIGTIA 706
Query: 672 QALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILN 731
R D LY L PQ P+V+T T P G NA VAV++Y+GYD+EDA+ILN
Sbjct: 707 ANQYVRFDTLLYTLLYPQRPMVQTRTIELIDFHNMPAGQNACVAVMSYSGYDIEDALILN 766
Query: 732 KSSVDRGMCHGQIYQTETIDLSDDGNK-VDRGQKLFRRNKDAKSL--HSVIDSDGLPYVG 788
++S+DRG +Y+ +T+ + N VDR R D+ L V+D +G+ G
Sbjct: 767 QASLDRGFGRCMVYRKQTVSIKTYPNMLVDRIVAPTRNRDDSSRLAKFDVLDQEGICRPG 826
Query: 789 QMIHPGEPYCSIYDKTTNSWRTN-----------------SRKGSESVFVDYVAVDMKNS 831
+ + G ++ K T +N S KG VD V + +
Sbjct: 827 ERVENGS---TLVLKETPVNTSNPIQDPHNAAVQYKPAYVSYKGPCEGVVDKVLLTNNSE 883
Query: 832 KNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHA 891
N I R TR P +GDKFSSRHGQKGVC + DMPFS + G+ PD+I+NPH
Sbjct: 884 DN--HLIKILLRTTRRPEVGDKFSSRHGQKGVCGLIVRQEDMPFSDI-GICPDIIMNPHG 940
Query: 892 FPSRMTIAMLLESVAAK 908
FPSRMT+ L+E ++ K
Sbjct: 941 FPSRMTVGKLMEFLSGK 957
>gi|294871589|ref|XP_002765980.1| DNA-directed RNA polymerase I subunit, putative [Perkinsus marinus
ATCC 50983]
gi|239866470|gb|EEQ98697.1| DNA-directed RNA polymerase I subunit, putative [Perkinsus marinus
ATCC 50983]
Length = 510
Score = 267 bits (683), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 134/297 (45%), Positives = 182/297 (61%), Gaps = 17/297 (5%)
Query: 628 THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
TH E+ P MLSV+A LTP+S+HNQSPRNMYQCQM KQTM +R D K+Y +
Sbjct: 4 THIELSPISMLSVIAGLTPFSNHNQSPRNMYQCQMLKQTMAIPYLNHPYRTDNKVYKITY 63
Query: 688 PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
PQ P+VRT ++ D P GTNAIVAV+A++G+DMEDA+I++K S DRG HG +Y+T
Sbjct: 64 PQFPMVRTTVLSEANFDVKPAGTNAIVAVIAHSGFDMEDALIISKGSYDRGFKHGSVYKT 123
Query: 748 ETIDLSDDGNKVDRGQKLFRRNKDAKSLHSV--IDSDGLPYVGQMIHPGEPYCSIYDKTT 805
+ I+ G R + N K V +D DG+PY+GQ +H G+P C + +K T
Sbjct: 124 KVINCPPKGTVGSRLAQFRADNHSVKGEKVVKDLDYDGIPYIGQQVHEGDPICRVLNKGT 183
Query: 806 NSWRTNSRKGSESVFVDYVAV--------------DMKNSKNLPQKANIRFRHTRNPIIG 851
+ K E +V+ V + + K+ ++ +I+ R RNP++G
Sbjct: 184 GEAKLEKYKEGEVAWVEQVNMIGGGGWWGGGAGARNPGGIKDGSERMSIKLRLPRNPVVG 243
Query: 852 DKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
DKFSSRHGQKGV + LWP DMPFS +G+ PD++ NPH PSRMTI ML+E +A K
Sbjct: 244 DKFSSRHGQKGVMAILWPQADMPFS-TSGISPDIMFNPHGMPSRMTIGMLIEFMAGK 299
>gi|328853924|gb|EGG03059.1| hypothetical protein MELLADRAFT_49581 [Melampsora larici-populina
98AG31]
Length = 1135
Score = 267 bits (682), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 257/995 (25%), Positives = 416/995 (41%), Gaps = 165/995 (16%)
Query: 9 FEPLRELVRHHIESFDYMLDEGLSEMF--------------------------------- 35
F ++ LV+ HI+SF+Y +D L +
Sbjct: 28 FLKVKGLVKQHIDSFNYFVDVELKAILRANATVVSDVDPNFHLTYLDINVGEPCRLDTGS 87
Query: 36 --------DHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQG 87
CR I+Y+ + V QY V+ + G+ P+ML++ +C L
Sbjct: 88 ATNKRITPHECRLRDITYSAPI--SVTIQYTKGNKRVLSKGIPIGRMPIMLRSNKCVLTN 145
Query: 88 ADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAV 147
+L + E + GGYF++ G E+V IL ++ + + D R+G T A
Sbjct: 146 KSDAELAKMTECPLDPGGYFVVKGTEKV----ILVQEQLSKNRILIE-TDSRKG-TIMAS 199
Query: 148 VIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTC 207
V + +S Y++ + ++ + +PV I LKA T+D E+ L C
Sbjct: 200 VTSSTHERKSKT-----YVVTKNSKVYLKHNSIQEEIPVVIALKAYGITSDNEVV-QLVC 253
Query: 208 CYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQ---- 263
++ Y+ I + + + + T+ Q L++IG+ + + G
Sbjct: 254 GNNDDYRST------------FSICIEQCHEAGIYTQKQALEYIGKSVKVMKKGPMVTVK 301
Query: 264 ---SESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQE 320
SE V TV+ ++ + K L M +++ + + + D+ D + N+
Sbjct: 302 RPLSEEALEVLSTVVLAHVPAENMNLQPKALYLAVMARRVIQAMANPKLVDDRDYVGNKR 361
Query: 321 ILLPGHLITIYLKEKLEDWLRKGKKLIQDEIE------NNGKKFDFFNLANIKKVMEKNP 374
+ L G L+++ ED +K ++ I+ N +FD N +
Sbjct: 362 LELAGQLLSLLF----EDLFKKFNTDLKMNIDKILKKPNRTTEFDAINQFRMH------- 410
Query: 375 SKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLR 434
I + TG + + +RAG T RL+++ + + + F R
Sbjct: 411 GDHISHGFIRAISTGNWSIKRFK--MERAGITHVLSRLSYISALGMMTRI--SSQFEKTR 466
Query: 435 TTS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSIL 493
S R L P WG LCP TP+GE CGL+ ++ + + D + +
Sbjct: 467 KVSGPRALQPSQWGMLCPSDTPEGEACGLVKNLALMTHITT---------DVDEEPIWNV 517
Query: 494 RVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSE-IEKVVAHLRRLKVSAASVI 552
IG I S+ P + V ++G ++G+ S E KV RR A +
Sbjct: 518 AYTIGCEDISSVTGTELYLPRHYI-VFINGNILGLSRSPERFVKVFRQFRR-----AGQV 571
Query: 553 PDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRP--VRNISLPSEESQNIELIGPFEQVFME 610
+ +V + + + + T + RP + + +P S +I+L+ + F +
Sbjct: 572 SE-----FVSIYMNSDQQTVNIATDGGRICRPMIIVDHGVPRVTSSHIQLLKENKMCFDD 626
Query: 611 ---------IRCPDGGDGGRRNAFPA----------THEEIHPTGMLSVVANLTPYSDHN 651
+ C + D +F A TH EI P +L VA L PY HN
Sbjct: 627 FLTAGLIEYLDCNEEND-----SFIALYEEDVDQFTTHLEIEPFTLLGAVAGLIPYPHHN 681
Query: 652 QSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTN 711
QSPRN YQC M KQ +G R D LY + P P+VRT T G D+ P G N
Sbjct: 682 QSPRNTYQCAMGKQAIGAIAYNQLHRIDTLLYLMVYPHHPMVRTKTIELVGYDKLPAGQN 741
Query: 712 AIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKD 771
A VAV++Y+GYD+EDA+ILNK+S+DRG Q+++ T + N R+ D
Sbjct: 742 ATVAVMSYSGYDIEDALILNKASLDRGFGRCQVFRKATAMIKRYPNGTYDRIADPPRDTD 801
Query: 772 AKSLHSV--IDSDGLPYVGQMIHPGEPYCSIYD-------------KTTNSWRTN--SRK 814
+ L D G+ VG + G Y + T +W + +
Sbjct: 802 GQILEKWKPCDEGGVADVGMKVFSGNVYVNKQTPSNANDNSVAGGAATVTAWNNTPMTYR 861
Query: 815 GSESVFVDYVAV-DMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDM 873
G+ ++D V V D ++ + L + R TR P +GDKFSSRHGQKGVC + DM
Sbjct: 862 GTIPSYIDKVLVTDTESDQTL---VKVLLRQTRRPELGDKFSSRHGQKGVCGLIVQQEDM 918
Query: 874 PFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
PF+ G PD+I+NPH FPSRMT+ +LE ++ K
Sbjct: 919 PFND-HGSCPDIIMNPHGFPSRMTVGKMLELLSGK 952
>gi|307595330|ref|YP_003901647.1| DNA-directed RNA polymerase subunit B [Vulcanisaeta distributa DSM
14429]
gi|307550531|gb|ADN50596.1| DNA-directed RNA polymerase subunit B [Vulcanisaeta distributa DSM
14429]
Length = 1141
Score = 266 bits (681), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 270/986 (27%), Positives = 436/986 (44%), Gaps = 179/986 (18%)
Query: 15 LVRHHIESFDYMLDEGLSEMFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRE------- 67
LVRH I+SF+ +++ L E+ + + G ++ + ++ G P VRE
Sbjct: 50 LVRHQIDSFNDFVEKKLQEIVNENNIIETEVKGLY---IKLERIEVGKPRVREADASEHI 106
Query: 68 ---------------------------------RFNFGQFPVMLKTRRCHLQGADSQKLV 94
+ G P+M++++ C+L G Q+L+
Sbjct: 107 LYPMEARLRNLTYAAPLYLTMVLYVNDEEVDRQKVYIGDLPIMVRSKFCNLYGLKRQELI 166
Query: 95 SLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDR--REGYTDKAVVIRCV 152
S E+ + GGYFI+NG ERV S N P F D+ + T A VI
Sbjct: 167 SKLEDPDDPGGYFIINGSERVIVSQEDLAPNKP-------FYDKGDKASITHVAKVISIG 219
Query: 153 RKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEK 212
+++VT++ + +G + + F +P I+++AL D +I L D
Sbjct: 220 AGYKTTVTVERHR--DGIIYVTFPAIATR--IPFPIIMRALGLETDEDIV--LAVSDDPD 273
Query: 213 YKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAE 272
+ E L S + + +A D L IG V G E A+
Sbjct: 274 IQNEL------LPSLQFSVQIASTVD-------DALDFIGSK---VAIGQPREVRIERAK 317
Query: 273 TVIRDYIFVHLNDNND---KFNLLIF-MLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLI 328
V+ Y HL D K L++ M++ + + D+ D + N+ + L G L+
Sbjct: 318 QVLDRYFLPHLGTTEDARIKKALMVGQMVKGVIEMYLGRRQPDDKDHIANKRVRLVGDLM 377
Query: 329 TIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKT 388
+ ++++QD I++ +E++ S+ S+ T+++
Sbjct: 378 AQLFRAVF-------RQVLQD----------------IRQQLERHYSRGKIPSLVTLVRA 414
Query: 389 G------RLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT---SVR 439
R A TG + R G + +R N + +S R V S RT R
Sbjct: 415 DIITERVRHAIATGNWIGGRTGVSQMLDRTNIMSTLSHLRRVVSNLS----RTQPHFEAR 470
Query: 440 KLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGV 499
L P WG LC + TP+G+ CGL+ ++ + D + ++L +
Sbjct: 471 DLHPTQWGRLCAIETPEGQNCGLVKNLALLSTITVGVDE-----------NEVEKLLYDL 519
Query: 500 GMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK--------VSAASV 551
G++P L + K G V L+GR++GV +E +K+V+ +R ++ ++ A +
Sbjct: 520 GVVPIL-RARKEGVKGT-EVYLNGRLIGV--HTEPDKLVSTIREMRRRGQINHEINVARI 575
Query: 552 IPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELI--GPFEQVFM 609
+ L+ V G L + + +RP L E +LI G E +
Sbjct: 576 RNEYLDEVRVNCDGGRLRRPLIIIENGKPKLRPEHVEKLRKGEWTWSDLISNGIIEYL-- 633
Query: 610 EIRCPDGGDGGRRNAFPA----------THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQ 659
DG + NA A TH E+ P+ M+ VA++ PY++HNQSPRN+Y+
Sbjct: 634 -----DGDE--EENALVAINPEEDMSKYTHMEVIPSVMIGAVASIIPYAEHNQSPRNIYE 686
Query: 660 CQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAY 719
MAKQ++GF +FR D + + L P+ P+V T G E P G NA+VA+L Y
Sbjct: 687 AAMAKQSLGFPAANYRFRMDSRGHLLIYPERPLVITRGIELNGYLERPAGQNAVVALLTY 746
Query: 720 TGYDMEDAMILNKSSVDRGMCHGQIYQT-ETIDLSDDGNKVDRGQ--KLFRRNKDAKSLH 776
TGY+MEDA+ILNKS+++RGM ++T ET + G + DR + R +
Sbjct: 747 TGYNMEDAVILNKSAIERGMYRSVFFRTYETEQMRYPGGEEDRIEIPSAEVRGYKGPEAY 806
Query: 777 SVIDSDGLPYVGQMIHPGE---------PYCSIYDKT-TNSWRTNS----RKGSESVFVD 822
+ +D DG+ + GE + +Y +T +S R +S R+G + + VD
Sbjct: 807 AHLDEDGIVSPEVFVSGGEVLIGKTSPPRFYGVYTETVVSSARRDSSITVRRGEKGI-VD 865
Query: 823 YVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMR 882
V V N + ++ R R P +GDKF+SRHGQKGV + P DMPF+ G+
Sbjct: 866 SVVVTETNEGY--KLVKVKVRELRIPELGDKFASRHGQKGVMGMMIPMQDMPFTE-DGIT 922
Query: 883 PDLIINPHAFPSRMTIAMLLESVAAK 908
PD+I+NPHA PSRMT+ LLES+A K
Sbjct: 923 PDIIVNPHALPSRMTVGQLLESMAGK 948
>gi|353234760|emb|CCA66782.1| probable DNA-directed RNA polymerase III, 130 KD subunit
[Piriformospora indica DSM 11827]
Length = 1118
Score = 266 bits (680), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 259/991 (26%), Positives = 440/991 (44%), Gaps = 157/991 (15%)
Query: 9 FEPLRELVRHHIESFDYMLDEGL-------------------------------SEMFD- 36
F ++ LV+ HI+SF+Y +D L SE D
Sbjct: 37 FLKVKGLVKQHIDSFNYFVDYDLRAIMEANCKVTSDVDPRFHFLFTDIRVGTPVSEQADF 96
Query: 37 ----------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQ 86
CR +Y+ LM D+E Y+ + R+ G+ P+ML++ +C L
Sbjct: 97 ANQRQPITPHQCRLRDATYSAPLMVDIE--YIRDNKRIQRKDVVIGRIPIMLRSNKCVLA 154
Query: 87 GADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKA 146
GA+ +L + E + GGYF++ G E+V IL ++ S R E + K+
Sbjct: 155 GANESQLAVMNECPLDPGGYFVVKGTEKV----ILVQEQL------SKNRIIVEIDSAKS 204
Query: 147 VVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---LPVGIVLKALVDTNDLEIFN 203
++ V S Y+ ++R G + +P+ I LKAL +D EI
Sbjct: 205 IISASVTSSTHSGLKSKTYV---NMRKGLIVLKHNSFSEDIPIVIALKALGVQSDKEIL- 260
Query: 204 HLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLS--LTTRLQCLQHIGEHFQPVIDG 261
L C + + +E SP + E + + +Q L R++ ++ + +P
Sbjct: 261 -LLCAGNTESYQE---AFSPNLEESSRAGVYTIQQAREWLGARVRSMRRMVGPRRP---- 312
Query: 262 LQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEI 321
E ++ ++ V D + K + M +++ + + D+ D + N+ +
Sbjct: 313 -NWEEGLECLVMIVLTHVPVVNMDLSAKAIYVATMTRRVLMAHEDPKLVDDRDYVGNKRL 371
Query: 322 LLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTS 381
L G L+ + ++ + ++ + KK D++ + F+ + ++ NP Q
Sbjct: 372 ELAGQLLALLFEDLFKAYVSELKKAF-DKVLGKPARTSAFD-PHTTMLLHGNPITQ---G 426
Query: 382 IETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRK 440
+ TG + + +RAG T RL+++ + + + F R S R
Sbjct: 427 FIRAISTGNWSLKRFR--MERAGVTHVLSRLSYISALGMMTRI--SSQFEKTRKVSGPRA 482
Query: 441 LLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVG 500
L P WG LCP TP+GE CGL+ ++ + + + + ++ + + +++ G
Sbjct: 483 LQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDVEEKPLVKIITLLGVEDIQLSTGSE 542
Query: 501 MIPSLPKLVKSGPPAVLSVLLDGRVVGV--IPSSEIEKVVAHLRRLKVSAASVIPDDLEV 558
+ GP + + V L+G ++G+ PS + VA R+L+ A I +
Sbjct: 543 IY---------GPTSFV-VHLNGLIIGLTRFPS----RFVAQFRKLR--RAGRINE---- 582
Query: 559 GYVPLSLGGAYPGLYLFTSPPKFVRPVRNIS--LPSEESQNIELIG----PFEQVFME-- 610
+V + + + + + + + RP+ + P +++I+++ FE +
Sbjct: 583 -FVGIYINHHHKTVNIASDGGRICRPLIIVERMQPKVTNEHIQMLKLGKLAFEDFLHQGL 641
Query: 611 ---IRCPDGGDGG----RRNAFPAT-HEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQM 662
+ + D ++ P+T H EI P +L VA L PY HNQSPRN YQC M
Sbjct: 642 VEYVDVNEENDSHIALYEKDIEPSTTHLEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAM 701
Query: 663 AKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGY 722
KQ +G R D LY L PQ P+V+T T G D+ P G NA VA+++Y+GY
Sbjct: 702 GKQAIGAIAYNQLNRIDTLLYLLVYPQQPMVKTKTIELVGYDKLPAGQNATVAIMSYSGY 761
Query: 723 DMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGN----------KVDRGQKLFRRNKDA 772
D+EDA+ILN++S++RG Q+++ T + N KV +KL +R
Sbjct: 762 DIEDALILNRASIERGYGRCQVFRKNTAIIRKYPNGTYDRLVAPSKVGTEEKLPKR---- 817
Query: 773 KSLHSVIDSDGLPYVGQMIHPGEPYC---SIYDKTTNSWRTN-----------SRKGSES 818
+ ++D DGL G+ + P + Y S D TNS N + K +
Sbjct: 818 ---YEILDDDGLARPGERVDPDDVYVNKQSPKDTVTNSLTVNPAQVEYRPTPLTYKTKVA 874
Query: 819 VFVDYVAV-DMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSG 877
++D V + D N + L + R TR P +GDKFSSRHGQKGV + P DMPF+
Sbjct: 875 GYIDRVMITDTDNDQAL---VKVLIRQTRIPELGDKFSSRHGQKGVVGLIVPQEDMPFND 931
Query: 878 VTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
G+ PD I+NPH FPSRMT+ ++E +A K
Sbjct: 932 -QGICPDSIMNPHGFPSRMTVGKMIELLAGK 961
>gi|393911066|gb|EJD76149.1| DNA-directed RNA polymerase [Loa loa]
Length = 1136
Score = 266 bits (680), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 262/998 (26%), Positives = 431/998 (43%), Gaps = 164/998 (16%)
Query: 9 FEPLRELVRHHIESFDYML------------------------------------DEGLS 32
F +R LV+ HI S+DY + +EG +
Sbjct: 22 FLQVRGLVKQHIASYDYFVSTEIKKILRANDRITSDANPSFYLKYLDIRVGMPSSEEGFN 81
Query: 33 EMFD-----HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQG 87
++ D CR ++Y+ + D+E Y V+R G+ PVML++ +C L+
Sbjct: 82 QINDKISPHECRLRDMTYSAPISVDIE--YTRGSQRVLRNGLVIGKMPVMLRSSKCVLKN 139
Query: 88 ADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAV 147
+ +L ++E + GGYFI+ G E+V V++ +Q + ++ R +
Sbjct: 140 MNESELAHVQECPYDPGGYFIIRGSEKV---VLIQEQ-----LSKNRIMIGRNSKKELQC 191
Query: 148 VIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYL--LPVGIVLKALVDTNDLEIFNHL 205
I +++ S T Y+ + R ++++ + +PV IV KA+ +D +I + +
Sbjct: 192 EILSSTQERKSKT----YIASKKQR--YYVRHNQLSDDVPVAIVFKAMGFESDHDIVSAV 245
Query: 206 TCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEH-----FQPVID 260
+EK+ A +P + E + T+ LQ+I F P
Sbjct: 246 G--LEEKFV----AAMAPSIEE--------CASHQIVTQEGALQYIASKVKMRKFGPFAS 291
Query: 261 GLQS---ESYYAVAETVIRDYIFVHLN--DNNDKFN--LLIFMLQKLFSLVDHTSVSDNP 313
G S + A+ + + + H+ D N K L M+++L + D+
Sbjct: 292 GTSSTLPREHEAI--DFLSNLMIAHVPCPDGNMKMKAIYLGLMIRRLMQAEVGDTECDDR 349
Query: 314 DSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKN 373
D N+ + L G L+ + ++ + + + K++ + + GK LA +++
Sbjct: 350 DFYGNKRLELAGSLLALLFEDVFKRFNSELKRIADNSL---GK-----TLAAPLDIVKHM 401
Query: 374 PSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGL 433
I ++ L TG + +R G T RL+++ + ++ ++F
Sbjct: 402 RQDLITNALVDALATGNWTIKRFK--MERQGVTQVLSRLSYISVLGMMTRIN--STFEKT 457
Query: 434 RTTS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSI 492
R S R L P WG LCP TP+GE CGL+ ++ + + D IR
Sbjct: 458 RKVSGPRSLQPSQWGMLCPSDTPEGESCGLVKNLALISHITTDSDEEPVIR--------- 508
Query: 493 LRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVI 552
L GV + SL P V L+G +VG+ + + +++V+ +R ++
Sbjct: 509 LLYNSGVEDVKSL-HFSAIHSPVYHIVFLNGVIVGL--TIDPQRIVSTIRAVRRHG---- 561
Query: 553 PDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRP---VRNISLPSEESQNIELIGPFEQVFM 609
L +V +S A +Y+ + + RP V+N +P ++IE + ++F
Sbjct: 562 ---LLNEFVSVSTNAAQRSVYIASDGGRLCRPYIIVKN-GVPQVTQEHIEELKKGCRIFE 617
Query: 610 EI------------RCPDGGDGGRRNAFP--ATHEEIHPTGMLSVVANLTPYSDHNQSPR 655
+ D N TH EI P +L V A L PY HNQSPR
Sbjct: 618 DFVDDGLIEYLDVNEMNDASIAVYENQIKPNTTHLEIEPFTLLGVCAGLIPYPHHNQSPR 677
Query: 656 NMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVA 715
N YQC M KQ MG + R D +Y L PQ P+V+T T ++ P G NA++A
Sbjct: 678 NTYQCAMGKQAMGTIGYNQQKRIDSLMYLLVYPQRPLVKTKTIEFCNFEKLPAGQNAVIA 737
Query: 716 VLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKV-DR--GQKLFRRNKDA 772
V++Y+GYD+EDA++LNK+S+DRG +Y+ N+ DR G + +
Sbjct: 738 VMSYSGYDIEDALVLNKASLDRGYGRCLVYKHAKATARKYPNQTFDRLMGPTVEATTRKP 797
Query: 773 KSLHSVIDSDGLPYVGQMIHPGE-------PYCSIYDKTTNSWRTNSRKGSESVFVDYVA 825
H V+D +G+ YVG IH + P S T S N S V+Y
Sbjct: 798 IYKHQVLDQEGIVYVGACIHSKQVMINKHMPVVSTEAGATTS-SNNDGTNVSSHEVEYKD 856
Query: 826 VDMKNSKNLPQKA---------------NIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPD 870
V + +P A + R TR P +GDKFSSRHGQKGVC +
Sbjct: 857 VSVVYRNPVPSYAERVLLTYNEDDAHLIKVLLRQTRRPELGDKFSSRHGQKGVCGLIAQQ 916
Query: 871 IDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
DMPF+ + GM PD+I+NPH +PSRMT+ L+E ++ K
Sbjct: 917 EDMPFNDL-GMCPDMIMNPHGYPSRMTVGKLMELLSGK 953
>gi|195123595|ref|XP_002006289.1| GI20961 [Drosophila mojavensis]
gi|193911357|gb|EDW10224.1| GI20961 [Drosophila mojavensis]
Length = 1136
Score = 266 bits (680), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 257/928 (27%), Positives = 404/928 (43%), Gaps = 139/928 (14%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR +Y+ + D+E Y + R G+ P+ML+ C L G +L L
Sbjct: 110 CRLRDTTYSAPISVDIE--YTRGTQRIKRNNLLIGRMPLMLRCSNCVLTGKSEFELSKLN 167
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRC----VR 153
E + GGYF++ G E+V +++ +Q M+ F V++C
Sbjct: 168 ECPLDPGGYFVVRGQEKV---ILIQEQLSWNKMLTEDFNG----------VVQCQVTSST 214
Query: 154 KDQSSVTLKL-----YYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCC 208
++ S TL L YYL + S+ +P+ ++ KAL +D EI H+
Sbjct: 215 HEKKSRTLVLSKHGKYYLKHNSMTDD---------IPIVVIFKALGVVSDQEIMAHIGL- 264
Query: 209 YDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIG-----EHFQPVIDGLQ 263
D + + GA L E +L + T+ + L ++G + FQ
Sbjct: 265 -DARSQNRFGAS------------LLEAFNLKIFTQQRALDYMGSKLVVKRFQSATTKTP 311
Query: 264 SESYYAVAETVIRDYIFVHLNDNNDKFNL----LIFMLQKLFSLVDHTSVSDNPDSLQNQ 319
SE A ++ I H+ +N F + + M++++ + ++ D+ D N+
Sbjct: 312 SEE----ARELLLTTILAHVPVDNFNFQMKAIYVSLMVRRVMAAELDKTLFDDRDYYGNK 367
Query: 320 EILLPGHLITIYLKE--KLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQ 377
+ L G LI++ ++ K +W K+I D+ K F V++ + Q
Sbjct: 368 RLELAGSLISLMFEDLFKRMNW---ELKMIADKNIPKVKAAQF-------DVVKHMRAAQ 417
Query: 378 IGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS 437
I +E+ + +G + +RAG T RL+++ + V+ + F R S
Sbjct: 418 ITAGLESAISSGNWTIKRFK--MERAGVTQVLSRLSYISALGMMTRVN--SQFEKTRKVS 473
Query: 438 -VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
R L P WG LCP TP+GE CGL+ ++ + + D R L
Sbjct: 474 GPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTEVDERP---------VMTLAYN 524
Query: 497 IGVGMIPSLPKLVKSGP---PAVLSVLLDGRVVGV-IPSSEIEKVVAHLRRLKVSAASVI 552
GV I + V P P V V ++G V+G+ I + + + ++RR +
Sbjct: 525 AGVEDI----REVSGNPINNPHVFLVFINGNVLGLTINQRHLVRNLRYMRRKGRMGS--- 577
Query: 553 PDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRP---VRNISLPSEESQNIELIGPFEQV-- 607
+V + +++ T + RP V N ++ EL+ +
Sbjct: 578 -------FVSIHTSYTQRCIFIHTDGGRLCRPYIIVENQRPLVQQRHLDELMRGVRKFDD 630
Query: 608 FMEIRCPDGGDGGRRN-AFPA----------THEEIHPTGMLSVVANLTPYSDHNQSPRN 656
F+ + D N +F A TH EI P +L V A L PY HNQSPRN
Sbjct: 631 FLHDGLIEYLDVNEENDSFIAWNEEQLEPHTTHLEIEPFTLLGVCAGLVPYPHHNQSPRN 690
Query: 657 MYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAV 716
YQC M KQ MG K R D +Y+L PQ P+V++ T D+ P G NA VAV
Sbjct: 691 TYQCAMGKQAMGMIGYNQKNRIDSLMYNLVYPQAPMVKSRTIELTNFDKLPAGQNATVAV 750
Query: 717 LAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKV-DRGQKLFRRNKDAKSL 775
++Y+GYD+EDA+ILNK+S+DRG +Y+ + N+ DR + K +
Sbjct: 751 MSYSGYDIEDALILNKASIDRGYGRCLVYKNSKCTVKRYANQTFDRIMGPVKDALTNKVI 810
Query: 776 --HSVIDSDGLPYVGQ-------MIHPGEPYCSIYDKTTNSWRTN------SRKGSESVF 820
H V+D+DG+ G+ MI+ P + + + S KG E +
Sbjct: 811 FKHDVLDTDGIVAPGEQVQNKQIMINKEMPAVTSINPLEGQSQVPYTAVPISYKGPEPSY 870
Query: 821 VDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTG 880
++ V V ++ K I R TR P IGDKFSSRHGQKGV + DMPF+ G
Sbjct: 871 IERVMVSANAEEDFLIK--ILLRQTRIPEIGDKFSSRHGQKGVTGLIVDQEDMPFNDF-G 927
Query: 881 MRPDLIINPHAFPSRMTIAMLLESVAAK 908
+ PD+I+NPH FPSRMT+ LE + K
Sbjct: 928 ICPDMIMNPHGFPSRMTVGKTLELLGGK 955
>gi|195381659|ref|XP_002049565.1| GJ20682 [Drosophila virilis]
gi|194144362|gb|EDW60758.1| GJ20682 [Drosophila virilis]
Length = 1137
Score = 265 bits (678), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 261/929 (28%), Positives = 411/929 (44%), Gaps = 140/929 (15%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR +Y+ + D+E Y + R G+ P+ML+ C L G +L L
Sbjct: 110 CRLRDTTYSAPISVDIE--YTRGTQRIKRNNLLIGRMPLMLRCSNCVLTGKSEFELSKLN 167
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRC----VR 153
E + GGYF++ G E+V +++ +Q M+ F V++C
Sbjct: 168 ECPLDPGGYFVVRGQEKV---ILIQEQLSWNKMLTEDFNG----------VVQCQVTSST 214
Query: 154 KDQSSVTLKL-----YYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCC 208
++ S TL L YYL + S+ +P+ ++ KAL +D EI +H+
Sbjct: 215 HEKKSRTLVLSKHGKYYLKHNSMTDD---------IPIVVIFKALGVVSDQEIMSHIG-- 263
Query: 209 YDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIG-----EHFQPVIDGLQ 263
D + + GA L E +L + T+ + L ++G + FQ +
Sbjct: 264 LDARSQNRFGAS------------LLEAFNLKVFTQQRALDYMGSKLVVKRFQSATNKTP 311
Query: 264 SESYYAVAETVIRDYIFVHLNDNNDKFNL----LIFMLQKLFSLVDHTSVSDNPDSLQNQ 319
SE A ++ I H+ +N F + + M++++ + ++ D+ D N+
Sbjct: 312 SEE----ARELLLTTILAHVPVDNFNFQMKAIYVSLMVRRVMAAELDKTLFDDRDYYGNK 367
Query: 320 EILLPGHLITIYLKE--KLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQ 377
+ L G LI++ ++ K +W K+I D+ K F V++ + Q
Sbjct: 368 RLELAGSLISLMFEDLFKRMNW---ELKMIADKNIPKVKAAQF-------DVVKHMRAAQ 417
Query: 378 IGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS 437
I +E+ + +G + +RAG T RL+++ + V+ + F R S
Sbjct: 418 ITVGLESAISSGNWTIKRFK--MERAGVTQVLSRLSYISALGMMTRVN--SQFEKTRKVS 473
Query: 438 -VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
R L P WG LCP TP+GE CGL+ ++ + + D R L
Sbjct: 474 GPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTEVDERP---------VMTLAYN 524
Query: 497 IGVGMIPSLPKLVKSGP---PAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIP 553
GV I + V P P V V ++G V+G+ + +V +LR ++
Sbjct: 525 AGVEDI----REVSGNPINNPHVFLVFINGNVLGLTINHR--HLVHNLRYMRRKG----- 573
Query: 554 DDLEVG-YVPLSLGGAYPGLYLFTSPPKFVRP--VRNISLPSEESQNI-ELIGPFEQV-- 607
+G +V + +++ T + RP + S P + +++ EL+ +
Sbjct: 574 ---RMGSFVSIHTSYTQRCIFIHTDGGRLCRPYIIVEKSRPLVQQRHLDELLRGVRKFDD 630
Query: 608 FMEIRCPDGGDGGRRN-AFPA----------THEEIHPTGMLSVVANLTPYSDHNQSPRN 656
F+ + D N +F A TH EI P +L V A L PY HNQSPRN
Sbjct: 631 FLHDGLIEYLDVNEENDSFIAWNEEHIEPHTTHLEIEPFTLLGVCAGLVPYPHHNQSPRN 690
Query: 657 MYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAV 716
YQC M KQ MG K R D +Y+L PQ P+V++ T D+ P G NA VAV
Sbjct: 691 TYQCAMGKQAMGMIGYNQKNRIDSLMYNLVYPQAPMVKSRTIELTNFDKLPAGQNATVAV 750
Query: 717 LAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKV-DRGQKLFRRNKDAKSL 775
++Y+GYD+EDA+ILNK+S+DRG +Y+ + N+ DR + K +
Sbjct: 751 MSYSGYDIEDALILNKASIDRGYGRCLVYKNSKCTVKRYANQTFDRIMGPVKDALTNKVI 810
Query: 776 --HSVIDSDGLPYVGQ-------MIHPGEP-YCSIYDKTTNSWRTN------SRKGSESV 819
H V+D+DG+ G+ MI+ P SI S + S KG E
Sbjct: 811 FKHDVLDTDGIVAPGEQVLNKQIMINKEMPAVTSINPLEGQSAQVPYTAVPISYKGPEPS 870
Query: 820 FVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVT 879
+++ V V ++ K I R TR P IGDKFSSRHGQKGV + DMPF+
Sbjct: 871 YIERVMVSANAEEDFLIK--ILLRQTRIPEIGDKFSSRHGQKGVTGLIVDQEDMPFNDF- 927
Query: 880 GMRPDLIINPHAFPSRMTIAMLLESVAAK 908
G+ PD+I+NPH FPSRMT+ LE + K
Sbjct: 928 GICPDMIMNPHGFPSRMTVGKTLELLGGK 956
>gi|189230055|ref|NP_001121521.1| polymerase (RNA) III (DNA directed) polypeptide B [Xenopus
(Silurana) tropicalis]
gi|183986364|gb|AAI66377.1| LOC100158643 protein [Xenopus (Silurana) tropicalis]
Length = 1134
Score = 265 bits (678), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 253/992 (25%), Positives = 418/992 (42%), Gaps = 165/992 (16%)
Query: 9 FEPLRELVRHHIESFDYMLDEGLSEMFD-------------------------------- 36
F ++ LV+ HI+SF+Y +++ + ++
Sbjct: 33 FLKVKGLVKQHIDSFNYFINDEIKKIMKANEKVTSDADPMWYLKYLNIYVGLPDVEESFN 92
Query: 37 --------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGA 88
CR ++Y+ + D+E Y ++R G+ P+ML++ C L G
Sbjct: 93 VTRPVSPHECRLRDMTYSAPITVDIE--YTRGSQRIIRNALPIGRMPIMLRSSNCVLTGK 150
Query: 89 DSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVV 148
+ L E + GGYFI+ G+E+V +++ +Q +S R R+G +V
Sbjct: 151 TPAEFAKLNECPLDPGGYFIVKGVEKV---ILIQEQ---LSKNRIIVEADRKGTVGASVT 204
Query: 149 IRC-VRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYL--------LPVGIVLKALVDTNDL 199
+K ++++ +K QG+ YL +P+ I+ KA+ +D
Sbjct: 205 SSTHEKKSRTNLVVK---------------QGRFYLKHNTLTEDIPIAIIFKAMGVESDQ 249
Query: 200 EIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVI 259
EI + E+ + + S L E Q + T++Q L+ IG +
Sbjct: 250 EIVQMIG--------TEEHVIAAFAPS------LEECQKAQIFTQMQALKFIGNKVRRQR 295
Query: 260 DGLQS---ESYYAVAETVIRDYIFVHLNDNNDKFN---LLIFMLQKLFSLVDHTSVSDNP 313
S +S A ++ I H+ F + I ++ + L + D+
Sbjct: 296 MWGSSGPKKSKIDEARELLASTILTHVPVKEFHFRTKCIYIAVMVRRVILAQGANKVDDR 355
Query: 314 DSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEI-ENNGKKFDFFNLANIKKVMEK 372
D N+ + L G L+++ ++ + + + KK+ I + +FD V++
Sbjct: 356 DYYGNKRLELAGQLLSLLFEDLFKKFNSEMKKIADQVIPKQRAAQFD---------VVKH 406
Query: 373 NPSKQIGTSIETMLKTGRLATQT-GLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFA 431
QI + + +G + + +D R G T RL+++ + + + F
Sbjct: 407 MRQDQITNGMVNAISSGNWSLKRFKMD---RQGVTQVLSRLSYIAALGMMTRI--SSQFE 461
Query: 432 GLRTTS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRT 490
R S R L P WG LCP TP+GE CGL+ ++ + + + I+ + +
Sbjct: 462 KTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIIKLAANLGV 521
Query: 491 SILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAAS 550
+ +L G + V V L+G ++GVI + +K+V R ++ A
Sbjct: 522 EDVNLLCGEEL----------SYANVFLVFLNGNILGVI--RDHQKLVNTFRLMR--RAG 567
Query: 551 VIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRP---VRNISLPSEESQNIEL---IGPF 604
I + +V +S + +Y+ + + RP V+N EL F
Sbjct: 568 YINE-----FVSISTNISDRCVYISSDGGRLCRPYIIVKNQRSAVTNKHIQELSQGYRSF 622
Query: 605 EQVFME--IRCPDGGDGGRRNAF--------PATHEEIHPTGMLSVVANLTPYSDHNQSP 654
E E + D + N TH EI P +L V A L PY HNQSP
Sbjct: 623 EDFLHESLVEYLDVNEENDCNVALYEHTITKHTTHLEIEPFTLLGVCAGLIPYPHHNQSP 682
Query: 655 RNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIV 714
RN YQC M KQ MG + R D +Y L PQ P+V+T T ++ P G NA V
Sbjct: 683 RNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLAYPQRPMVKTKTIELIEFEKLPAGQNATV 742
Query: 715 AVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKV-DR--GQKLFRRNKD 771
AV++Y+GYD+EDA++LNK+S+DRG +Y+ L N+ D+ G L +
Sbjct: 743 AVMSYSGYDIEDALVLNKASLDRGFGRCLVYKNAKCTLKRYSNQTFDKVMGPMLDANTRK 802
Query: 772 AKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTN---------------SRKGS 816
H ++D+DG+ G+ + + + Y T + KG
Sbjct: 803 QIWRHEILDADGICSPGEKVENKQVLVNKYMPTVTQTPLEGSSVPQQPQYKDVPITYKGP 862
Query: 817 ESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFS 876
+++ V + K I R TR P IGDKFSSRHGQKGVC + P DMPF
Sbjct: 863 TDSYIEKVMISSNAEDAFLIK--ILLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFC 920
Query: 877 GVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
TG+ PD+I+NPH +PSRMT+ L+E +A K
Sbjct: 921 E-TGICPDIIMNPHGYPSRMTVGKLIELLAGK 951
>gi|313245556|emb|CBY40250.1| unnamed protein product [Oikopleura dioica]
Length = 620
Score = 265 bits (676), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 158/539 (29%), Positives = 271/539 (50%), Gaps = 53/539 (9%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CRQ K YT + L +G V + + Q P+M+ + +CHL+G ++LV+ K
Sbjct: 109 CRQKKTDYTAPVHVTFNLINLSSGESQVVTKKDLLQMPLMVMSSKCHLRGLSPEELVARK 168
Query: 98 EEAAEMGGYFILNGLERVFRSVIL--PKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKD 155
E+ E+GGYFI +G E+V R + + ++N+P+ + R+ ++ RREGYTD ++IRC+
Sbjct: 169 EDHFEIGGYFIASGNEKVIRLLNMNRTRRNFPLGLRRNGWKRRREGYTDAGLMIRCMDNW 228
Query: 156 QSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKK 215
+ + + ++ + + F++Q + + +P+ V++AL DLEI+ ++
Sbjct: 229 ERTSNMNVHVTKTNEMEVVFYIQKQLFHVPMMTVVRALTSWTDLEIYREFMQTMSDEPNY 288
Query: 216 EKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVI 275
+ +R+ L ++Q LT + +G+ F+ +S + +
Sbjct: 289 DSAV-------KRMLKKLVKIQHHFLTQ----AKFLGQSFRIFDICPAWKSDVEAGQAFL 337
Query: 276 RDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEK 335
+ Y ++LN++ DK M +K F + +T +D+ DS ++ ++LLPGHL E
Sbjct: 338 KRYCLIYLNNDEDKVRAFALMARKAFRISHNTCATDDIDSPESHDVLLPGHLFQSMTLEF 397
Query: 336 LEDWLRKGKKLI-----------QDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIET 384
E + R ++ DE+ N F + N+ + +
Sbjct: 398 FESYQRSVSMIMAKEYSKQLEKGNDEVGQNMLSFAINKIGNMNQ------------HFKY 445
Query: 385 MLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPE 444
++ TG L T GL +QQ AG V AE++NF RF S FR +HRGA F +R TS RKL
Sbjct: 446 LIATGNLKTNDGLGMQQLAGIVVGAEKINFARFYSHFRCIHRGAFFMEMRATSPRKLSTA 505
Query: 445 SWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPS 504
+WGF+CPVHTPDG PCGLLNH+ T R+ ++ + + +L+ +G+ P
Sbjct: 506 AWGFICPVHTPDGPPCGLLNHLAHTVRINVKRENTAKLEE----------LLLEIGVKPF 555
Query: 505 LPKLVKSGPPAVLSVLLDGRVVGVIPSS-EIEKVVAHLRRLKVSAASVIPDDLEVGYVP 562
+ V++DG+ +G I + + V +LRRLK S++ +PD LE+ + P
Sbjct: 556 QANEFD------VPVIIDGKQIGWIANGWRAQAVEKYLRRLKTSSSDRVPDTLEIVHCP 608
>gi|440297940|gb|ELP90581.1| DNA-directed RNA polymerase III subunit RPC2, putative [Entamoeba
invadens IP1]
Length = 1140
Score = 264 bits (675), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 265/987 (26%), Positives = 427/987 (43%), Gaps = 162/987 (16%)
Query: 9 FEPLRELVRHHIESFDYMLDEGLSEMFD-------------------------------- 36
F R LVR HI+SF+Y +DE + ++
Sbjct: 48 FVKSRGLVRQHIDSFNYFIDEEIRQIVRANDKVTCDADSKFYLKYLDVWVHQPCVEENYK 107
Query: 37 -------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGAD 89
CR +SYT + A +EF V R+ G P+ML+++ C L
Sbjct: 108 KEPITPMECRLRDLSYTAPIQASIEFT---RDKKVYRKTVTIGYMPIMLQSKHCVLYNNT 164
Query: 90 SQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVI 149
+ + E + GGYF++ G+ER VIL ++ MS R +G+ +V
Sbjct: 165 FDQFMKHGECPMDPGGYFVVKGVER----VILSQEQ--MSKNRILIETSSQGFLSASVTS 218
Query: 150 RCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY 209
+V YL G + L ++ +PV I++KA+ +D+E
Sbjct: 219 ATHEVKSRTVV----YLKRGKLYLKHNSLTED--VPVMIIIKAMGMESDMEFLQF----- 267
Query: 210 DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDG----LQSE 265
VG+ S+ + I E + ++ + + L+++G H + + G +
Sbjct: 268 ----------VGNSYTSKMINSI-EECKTKNVLNQREALRYVGNHLK-IYTGQKGYISKR 315
Query: 266 SYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLV---DHTSVSDNPDSLQNQEIL 322
A V+ + I H+ F I + + S + D T D+ D N+ +
Sbjct: 316 PKVDEARDVLANLILPHIEVLRYNFKTKIIYIALMVSWILKADETGELDDKDYYGNKRME 375
Query: 323 LPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSI 382
L G ++++ ++ + + + + + E+ + F L +I +I T +
Sbjct: 376 LAGQMMSLLFEDLFKQFNTELQTIATKELSKKTRSESFDILKHIS-------PHRITTGL 428
Query: 383 ETMLKTGRLATQT-GLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRK 440
L TG + +D RAG T RL+++ + ++ + F R S R
Sbjct: 429 IHALSTGNWVLKRFNMD---RAGVTQVLSRLSYISALGMMTRLN--SHFEKTRKVSGPRS 483
Query: 441 LLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVG 500
L WG +CP TP+GE CGL+ + + V + D + +I+ +L +G
Sbjct: 484 LQGSQWGMVCPSDTPEGESCGLVKNFSLLTEVTTDSDDQ-----------AIMTMLFNLG 532
Query: 501 M-IPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVG 559
+ +L + V L+G+++G+ + + LR+ + V+ +G
Sbjct: 533 VEDANLISGDELNSENSYLVFLNGQLLGI-----HQNPIHFLRQCR-----VLRRHGRLG 582
Query: 560 -YVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFE-----QVFMEIR- 612
V L L + + + + RP+ I + + +S+ IGP E + F I
Sbjct: 583 KKVSLHLNETQRSINISSDGGRVCRPL--IVVENAKSK----IGPKEIRDIVEGFKTIED 636
Query: 613 CPDGG------DGGRRNAFPATHE----------EIHPTGMLSVVANLTPYSDHNQSPRN 656
C G N++ A +E EI P +L VVA L PY HNQSPRN
Sbjct: 637 CIKDGMIEYLDVNEENNSYIAIYENQINEHTTHLEIDPLSILGVVAGLIPYPHHNQSPRN 696
Query: 657 MYQCQMAKQTMGFSVQALKF-RADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVA 715
YQC M KQ +G ++ +F R D LY L PQ P+VRT T D+ P G NA+VA
Sbjct: 697 TYQCAMGKQAIG-TIGYNQFKRIDTLLYLLYYPQVPMVRTKTIDMINFDKVPAGENAMVA 755
Query: 716 VLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSL 775
V++Y+GYD+EDA ILNK+S+DRG +Y+ + + N + + A
Sbjct: 756 VMSYSGYDIEDASILNKASIDRGYQRCFVYRKADVVIKKYRNGMSDRVVCPTDEERAMKK 815
Query: 776 HSVIDSDGLPYVGQMIHPGEPYCSIY--DKTTNSWRTN------------SRKGSESVFV 821
+ V+D DG+ G + PG Y + + TT T+ + KGS +V
Sbjct: 816 YKVLDFDGVCSPGTKLMPGMIYLNKQAPNNTTRPITTDVPTDEDFRREALTYKGSVPSYV 875
Query: 822 DYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGM 881
D V + +S P K I R +R P +GDKFSSRHGQKGV + DMPF+G G+
Sbjct: 876 DKVLI--TSSDEEPLKIKIGLRTSRRPELGDKFSSRHGQKGVTGLIVKQEDMPFTG-DGI 932
Query: 882 RPDLIINPHAFPSRMTIAMLLESVAAK 908
PD+I+NPH FPSRMT+ +LE V+ K
Sbjct: 933 CPDVIMNPHGFPSRMTVGKMLELVSGK 959
>gi|119719204|ref|YP_919699.1| DNA-directed RNA polymerase subunit B [Thermofilum pendens Hrk 5]
gi|119524324|gb|ABL77696.1| DNA-directed RNA polymerase, subunit B' [Thermofilum pendens Hrk 5]
Length = 1130
Score = 264 bits (675), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 263/984 (26%), Positives = 430/984 (43%), Gaps = 161/984 (16%)
Query: 15 LVRHHIESFDYMLDEGLSEMFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRE------- 67
LVR H++SF+ L+ GL E+ D K+ G +++F ++ G P RE
Sbjct: 28 LVRQHLDSFNAFLERGLQEIVDEVGGIKVESQG---VEIKFGKIEVGQPTFREADGSDLA 84
Query: 68 ---------------------------------RFNFGQFPVMLKTRRCHLQGADSQ-KL 93
G P+M+K+++C L G S+ ++
Sbjct: 85 LTPMIARLRNITYAAPLYLTMTLYVDGEERRTESVYIGSLPIMVKSKKCVLYGLKSEDEI 144
Query: 94 VSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVR 153
V E+ + GGYFI+NG ERV I+ +++ ++ V + T A V
Sbjct: 145 VKYGEDPYDPGGYFIVNGSERV----IVMQEDLSVNRVLVDYGGASGSVTHTAKVFSVAA 200
Query: 154 KDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKY 213
+S +T++ +G + F + +PV ++++AL D EI Y
Sbjct: 201 GQRSPLTVE--RTKDGMIYASFPACPSK--IPVVVLMRALGLKTDQEI------AY---- 246
Query: 214 KKEKGAVGS-PLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAE 272
A+G+ P++ + +L E ++ T + L +IG P G A+
Sbjct: 247 -----AIGNDPIIQQEFLPVLMEQSKIAATPE-EALDYIGSRVSP---GQPRNVRIERAQ 297
Query: 273 TVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLI 328
V+ + + H+ K + M+ +L L D+ D L N+ I G LI
Sbjct: 298 AVLDENLLPHIGRGPAARISKAFFVGQMVSRLLELKLGMRGPDDKDHLANKRIRQAGELI 357
Query: 329 TIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKT 388
+ +++ + IE + K NL +I + + T
Sbjct: 358 AQVFRSAFRQLVKE----MTYSIERHTSKTRDINLVSI---------------VRPDIIT 398
Query: 389 GRL--ATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT---SVRKLLP 443
RL A TG + R G + +R N+L IS R V S RT R+L P
Sbjct: 399 ERLNHALATGNWVGGRTGVSQILDRTNYLSTISHLRRVVSPLS----RTQPHFEARELHP 454
Query: 444 ESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIG-VGMI 502
WG LCPV +P+G+ CGL+ H+ +++ D + + +L+G +G++
Sbjct: 455 TQWGRLCPVESPEGQNCGLVKHLALLATLSNGTDEK-----------QVYDLLVGRLGVV 503
Query: 503 PSLPKLVKSGPPAVLSVLLDGRVVGVIPSSE-IEKVVAHLRRLKVSAASVIPDDLEVGYV 561
P + K+ A V L+GR++G + + + + + LRR + V Y
Sbjct: 504 PVEKTVGKNISGA--RVYLNGRLIGYVEDGKGLAETLRKLRREGRISHEVNVAFYSHEYT 561
Query: 562 PLSLGGAYPGLYLFTSPPKFVRP--VRNISLPSEESQNIELIGPFEQVFME------IRC 613
+ G +Y+ + RP V P + +++EL+ E + + +
Sbjct: 562 VGGVKGRIEEVYVNCDAGRIRRPLIVVENGEPRLKHEHVELLRKGEWTWSDLIENGIVEY 621
Query: 614 PDGGDGGRRNAFPA----------THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMA 663
D + NA+ A TH EI P +L ++A P+ ++NQSPRN YQ MA
Sbjct: 622 LDAEE--EENAYIATDVSELTPQHTHLEIVPAAILGIIAMTIPFIEYNQSPRNSYQAAMA 679
Query: 664 KQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYD 723
KQ++G K R D +++ + PQ P+V+T + +D P GTN +VAVL GY+
Sbjct: 680 KQSLGIPHYNFKLRMDPRMHVMYYPQKPLVKTRIFDLLPLDNLPYGTNMVVAVLTGGGYN 739
Query: 724 MEDAMILNKSSVDRGMCHGQIYQT-ETIDLSDDGNKVDRGQK--LFRRNKDAK--SLHSV 778
++DA+++NK++++RGM ++T E + G DR +K L + D K +
Sbjct: 740 IQDAVVINKAAIERGMSRSVFFRTYEAEERRYPGGLEDRFEKPSLEKDLLDVKPPQAYEA 799
Query: 779 IDS-DGLPYVGQMIHPGEPYCS------IYDKTTNSWRTNSRKGS-------ESVFVDYV 824
ID DG+ YV ++ G+ S Y T RK + E +D V
Sbjct: 800 IDPVDGIAYVEAELYGGQAVVSRTSPPRFYTSTLEPRVMTKRKDTSLLLRHGEKGIIDRV 859
Query: 825 AVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPD 884
+ M++ + + A +R R R +GDKF+SRHGQKGV L P DMPF+ G+ PD
Sbjct: 860 FI-MESPGGI-KLAKVRVRDLRPTELGDKFASRHGQKGVVGMLVPQEDMPFTE-EGITPD 916
Query: 885 LIINPHAFPSRMTIAMLLESVAAK 908
LIINPHA PSRMT+ LLE++ K
Sbjct: 917 LIINPHAIPSRMTVGQLLEAITGK 940
>gi|393235423|gb|EJD42978.1| DNA-directed RNA polymerase [Auricularia delicata TFB-10046 SS5]
Length = 1129
Score = 264 bits (674), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 262/997 (26%), Positives = 423/997 (42%), Gaps = 167/997 (16%)
Query: 9 FEPLRELVRHHIESFDYMLDEGLSEMFD-------------------------------- 36
F ++ LV+ HI+SF+Y +D L+ +
Sbjct: 22 FLRVKGLVKQHIDSFNYFVDVDLNNILKANNKVTSDVDPRFWLKYTDIRVGRPDRTDADA 81
Query: 37 --------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGA 88
CR +Y+ ++ V QY V ++ G+ P+ML++ +C L G
Sbjct: 82 IDRSITPHECRLRDTTYSAPILVTV--QYTRGKYVVKKQNVTIGRMPIMLRSNKCVLTGM 139
Query: 89 DSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVV 148
+ +L E + GGYFI+ G E+V IL ++ + + RD +G +V
Sbjct: 140 NEAQLARAIECPLDPGGYFIVKGTEKV----ILVQEQLSKNRIIVE-RDPTKGVVQASVT 194
Query: 149 IRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYL--------LPVGIVLKALVDTNDLE 200
+ K Y + +G YL +P+ I LKAL +D E
Sbjct: 195 ----SSTHGGMKTKTYVVTK---------KGNIYLRHNSIHEDVPIVIALKALGLQSDKE 241
Query: 201 IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQ---- 256
I +T E+++ ++ SP L E L + TR Q L +IG +
Sbjct: 242 IL-LVTAGGTEEFR----SIFSP--------NLEEASKLGVFTRQQALDYIGARVKINRR 288
Query: 257 -------PVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSV 309
P D L++ + TVI ++ V D K + M +++ V +
Sbjct: 289 VIGPRRPPWEDALEALA------TVILAHLPVENFDFRPKAVFVATMTRRVLMAVQDEKL 342
Query: 310 SDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKV 369
D+ D + N+ + L G L+ + ++ + + + K I D++ + F+ +
Sbjct: 343 VDDRDYVGNKRLELAGQLLALLFEDLFKRFNTELKSSI-DKVLKKPSRTSEFDAGQTLQF 401
Query: 370 MEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGAS 429
M I + TG + + +RAG T RL+F+ + + +
Sbjct: 402 M----GDHITAGFVRAISTGNWSLKRFK--MERAGVTHVLSRLSFIAALGMMTRIT--SQ 453
Query: 430 FAGLRTTS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKM 488
F R S R L P WG LCP TP+GE CGL+ ++ + + + IR
Sbjct: 454 FEKTRKVSGPRALQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDVEEEPIIR----- 508
Query: 489 RTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSA 548
L ++GV + L + V ++G ++G+ + + VA LR+L+
Sbjct: 509 ----LAFMLGVEDV-CLATGAEMYEHNNFMVHVNGLIIGLTRTPL--RFVAQLRKLR--R 559
Query: 549 ASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNI--SLPSEESQNIELIGPFE- 605
A I + +V + + + +Y+ + RP+ + P +++EL+ +
Sbjct: 560 AGRISE-----FVSVYINHHHRAVYIACDGGRICRPLIIVERGQPLVSVEHVELLKAGKM 614
Query: 606 --QVFMEIRCPDGGDGGRRN---------------AFPATHEEIHPTGMLSVVANLTPYS 648
F+++ + D N + TH EI P +L VA L PY
Sbjct: 615 NFDSFLKLGLVEYLDVNEENDSRIALYERDIVLTGSGRTTHLEIEPFTILGAVAGLIPYP 674
Query: 649 DHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPT 708
HNQSPRN YQC M KQ +G R D LY L PQ P+V+T T G + P
Sbjct: 675 HHNQSPRNTYQCAMGKQAIGAIAYNQLNRIDTLLYLLVYPQKPMVKTRTIELVGYERLPA 734
Query: 709 GTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKV-DRGQKLFR 767
G NA VAV++Y+GYD+EDA+ILNK+S+DRG Q+ + + N DR +
Sbjct: 735 GQNATVAVMSYSGYDIEDALILNKASLDRGYGRCQVMRKNVTMIRKYPNGTHDRLADAPK 794
Query: 768 -RNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKT-------------TNSWRTN-- 811
N + + + +I DG+ VG+ + PG+ Y + T S+R
Sbjct: 795 DENGNVQKRYDIIQMDGIAGVGERVDPGDIYVNKQTPTNANDNSAAMDGAVAASYRNTPM 854
Query: 812 SRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDI 871
S K + ++D V + + N K I R TR P +GDKFSSRHGQKGVC +
Sbjct: 855 SYKSPVAGYIDKVMLSETENDNTLVKVLI--RQTRRPELGDKFSSRHGQKGVCGLIVNQE 912
Query: 872 DMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
DMPF+ G+ PD I+NPH FPSRMT+ ++E ++ K
Sbjct: 913 DMPFND-QGVCPDSIMNPHGFPSRMTVGKMIELISGK 948
>gi|367035314|ref|XP_003666939.1| hypothetical protein MYCTH_2312111 [Myceliophthora thermophila ATCC
42464]
gi|347014212|gb|AEO61694.1| hypothetical protein MYCTH_2312111 [Myceliophthora thermophila ATCC
42464]
Length = 1155
Score = 263 bits (673), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 247/931 (26%), Positives = 408/931 (43%), Gaps = 132/931 (14%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR ++Y ++ D+ Y +VR+ + PVMLK+ +C L GA + ++ +
Sbjct: 109 CRLRDMTYAAPVVVDI--VYSRDRKKIVRKDIPLCRIPVMLKSAKCCLSGATNAQMEIMN 166
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
E + GGYFI+NG E+ VIL ++ + V ++ G + RK ++
Sbjct: 167 ECPLDPGGYFIINGTEK----VILIQEQLSKNRVIVEADEKTGGVSASVTSSTHERKSKT 222
Query: 158 SVTLKL-YYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKE 216
V LK +LN +V + +P+ IVLKAL +D EI L D +Y+ +
Sbjct: 223 YVILKKDRIVLNHNVLV--------EPIPIVIVLKALGGLSDYEIM-ELVAGGDARYQDD 273
Query: 217 KGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQ----------------PVID 260
I E + T+ Q L+++G + PV +
Sbjct: 274 ------------FLINFDEATKAGVFTQQQALEYVGSRVKMGGPKKGRSMAAPRRSPVEE 321
Query: 261 GLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQE 320
GL + + VA I+D F K + M++++ + D+ D + N+
Sbjct: 322 GLDALANVVVAHVEIQDLDFY------PKAIYIAMMVRRVLMASHDPKLVDDRDFVGNKR 375
Query: 321 ILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGT 380
+ L G L+++ ++ + ++ K G FF N + +P I +
Sbjct: 376 LELAGQLLSLLFEDMFKMFVGSLK----------GNMEYFFKKPN--RTSAYDPVGPISS 423
Query: 381 SIETMLKTGRLATQTG-LDLQQ----RAGYTVQAERLNFLRFISFFRAVHRGASFAGLRT 435
+ + + A Q+G ++++ RAG T RL+++ + + + F R
Sbjct: 424 QGQYITQGLNRAIQSGNWNVKRFNMNRAGVTHVLSRLSYIAALGMMTRI--SSQFEKTRK 481
Query: 436 TS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILR 494
S R L P WG LCP TP+GE CGL+ ++ + + + ++ I
Sbjct: 482 VSGPRALQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTNAEE-------EPVKNWIFS 534
Query: 495 VLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVI--PSSEIEKVVAHLRRLKVSAASVI 552
++ GV I P + + + L+G + P + RR +S
Sbjct: 535 LIPGVEPIRMFTGTEMHRPGSYI-IHLNGTPFALTRHPKQFAARFKTMRRRGHISP---- 589
Query: 553 PDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRP--VRNISLPSEESQNIELI----GPFEQ 606
+V + + + +++ T + RP + P + +++ L+ F+
Sbjct: 590 -------FVGIHINEHFSAIHIATDEGRICRPYIIVKDGKPRLKKEHLRLLQLGKATFDD 642
Query: 607 VFMEIRCPDGGDGGRRN-AFPATHEE----------IHPTGMLSVVANLTPYSDHNQSPR 655
F++ + D N A A EE I P +L VA L P+ HNQSPR
Sbjct: 643 -FLKNSVIEYLDVNEENDALIAIREEDVNQSTTHMEIEPFTILGAVAGLIPFPHHNQSPR 701
Query: 656 NMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVA 715
N YQC M KQ +G R D LY L PQ P+V T T D+ P G NA V
Sbjct: 702 NTYQCAMGKQAIGAIAYNQFNRIDTLLYTLVYPQRPMVITKTIQLIHYDKLPAGQNATVV 761
Query: 716 VLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSL 775
V++Y+GYD+EDA++LNK+S DRG Q+++ T +L N +++++ +++
Sbjct: 762 VMSYSGYDIEDALVLNKASCDRGFGRCQVFRKYTAELQQYPNGRKDRLGGIQKDEEGRTI 821
Query: 776 --HSVIDSDGLPYVGQMIHPGEPYC---SIYDKTTNSWRTNSRKGSES------------ 818
H+ +D DGL VG +H GE + D+T+ S +GS+
Sbjct: 822 AKHACLDKDGLAVVGYRVHSGETMIMKETPIDQTSTG--IGSDRGSDEFRPAPINYRIPD 879
Query: 819 -VFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSG 877
++D V V N++ ++ R TR P +GDKFSSRHGQKGV + DMPFS
Sbjct: 880 PAYIDKVMV--SNTEKNTAIIKVQTRQTRRPELGDKFSSRHGQKGVVGIIVDQEDMPFSD 937
Query: 878 VTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
+G+ PD+I+NPH FPSRMT+ L E + K
Sbjct: 938 -SGLVPDIIMNPHGFPSRMTVGKLFECLTGK 967
>gi|432863563|ref|XP_004070128.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like
[Oryzias latipes]
Length = 1093
Score = 263 bits (673), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 246/926 (26%), Positives = 403/926 (43%), Gaps = 170/926 (18%)
Query: 37 HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
CR ++Y+ + D+E Y ++R G+ P+ML++ C L G + L
Sbjct: 101 ECRLRDMTYSAPITVDIE--YTRGSQRIIRNALPIGRMPIMLRSSNCVLTGKTPMEFSKL 158
Query: 97 KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRC-VRKD 155
E + GGYFI+ G E+V +++ +Q +S R R+G +V +K
Sbjct: 159 NECPLDPGGYFIVKGQEKV---ILIQEQ---LSKNRIIVDQDRKGTVGASVTSSTHEKKS 212
Query: 156 QSSVTLKLYYLLNGSVRLGFWLQGKEYL--------LPVGIVLKALVDTNDLEIFNHLTC 207
++++ +K QG+ YL P+ I+ K + +D EI
Sbjct: 213 RTNIIVK---------------QGRFYLRHNTLSEDAPIAIIFKGMGVESDQEI------ 251
Query: 208 CYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESY 267
V++I E +H+ +F P ++ Q
Sbjct: 252 ---------------------VQMIGTE-------------EHVMANFAPSLEECQKAQI 277
Query: 268 YAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHL 327
+ +T ++++ F K L M++++ L + D+ D N+ + L G L
Sbjct: 278 FT--QTQVKEFNF------RAKCIYLAVMVRRVI-LAQGENKVDDRDYYGNKRLELAGQL 328
Query: 328 ITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLK 387
+++ ++ + + + KK I D+I + F ++ K M ++ QI + +
Sbjct: 329 LSLLFEDLFKKFNSELKK-IADQIIPKQRAAQF----DVVKHMRQD---QITNGMVNAIS 380
Query: 388 TGRLATQT-GLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLLPES 445
TG + + +D R G T RL+++ + + + F R S R L P
Sbjct: 381 TGNWSLKRFKMD---RQGVTQVLSRLSYISALGMMTRI--SSQFEKTRKVSGPRSLQPSQ 435
Query: 446 WGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSL 505
WG LCP TP+GE CGL+ ++ + + + I+ + + +L G +
Sbjct: 436 WGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIIKLALNLGVEDVNLLCGEEL---- 491
Query: 506 PKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSL 565
P+V V L+G ++GVI + K+V+ R ++ A I + +V +S
Sbjct: 492 ------SYPSVFLVFLNGNILGVIRNHH--KLVSTFRLMR--RAGFINE-----FVSIST 536
Query: 566 GGAYPGLYLFTSPPKFVRP--VRNISLPSEESQNIELIGP----FEQVFMEIRCPDGGDG 619
+Y+ + + RP + P +S++IE + FE F+ + D
Sbjct: 537 NLTDRCVYISSDGGRLCRPYIIVKKGQPMVKSKHIEDLSQGYRNFED-FLHEGLVEYLDV 595
Query: 620 GRRNAF-----------PATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMG 668
N TH EI P +L V A L PY HNQSPRN YQC M KQ MG
Sbjct: 596 NEENDCQIALYEHMINKETTHLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMG 655
Query: 669 FSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAM 728
+ R D +Y L PQ P+V+T T ++ P G NA VAV++Y+GYD+EDA+
Sbjct: 656 TIGYNQRNRIDTLMYLLAYPQRPMVKTKTIELIDFEKLPAGQNATVAVMSYSGYDIEDAL 715
Query: 729 ILNKSSVDRGMCHGQIYQTETIDLSDDGNKV-DR--GQKLFRRNKDAKSLHSVIDSDGLP 785
+LNK+S+DRG +Y+ L N+ D+ G L + H+++D+DG+
Sbjct: 716 VLNKASLDRGFGRCLVYKNTKCTLRRYTNQTFDKVMGPMLDAATRKPLWRHNILDADGIC 775
Query: 786 YVGQMI-----------------------HPGEPYCSIYDKTTNSWRTNSRKGSESVFVD 822
G+ + PG+P Y + S+ KGS +++
Sbjct: 776 CPGEKVENKQILVNKSMPTVTQTPLEGSAQPGQPQ---YKEVPISY-----KGSTDSYIE 827
Query: 823 YVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMR 882
V + K I R TR P IGDKFSSRHGQKGVC + P DMPF +G+
Sbjct: 828 KVMISSNAEDAFLIK--ILLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCD-SGVC 884
Query: 883 PDLIINPHAFPSRMTIAMLLESVAAK 908
PD+I+NPH +PSRMT+ L+E +A K
Sbjct: 885 PDIIMNPHGYPSRMTVGKLIELLAGK 910
>gi|145341844|ref|XP_001416013.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144576236|gb|ABO94305.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 1146
Score = 263 bits (673), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 271/1005 (26%), Positives = 431/1005 (42%), Gaps = 178/1005 (17%)
Query: 9 FEPLRELVRHHIESFDYMLDEGLSEMF--------------------------------- 35
F +R LVR HI+SF+Y+++E + ++
Sbjct: 28 FLKVRGLVRQHIDSFNYLVNEEIKKIIHAKANERVTCDSDPNFYLKYTNIHVGRPSVEED 87
Query: 36 --------DHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFN------FGQFPVMLKTR 81
CR ++Y + DVE Y V R+ N G+ P+ML++
Sbjct: 88 YVVEEITPQQCRLRDMTYAAPITVDVE--YTRGKEIVTRQAKNGVGGVVIGRIPLMLRSS 145
Query: 82 RCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREG 141
RC L G + +L L E + GGYFI+ G+E+V +++ +Q +S R +G
Sbjct: 146 RCVLTGKNEDELARLGECPLDPGGYFIVKGVEKV---ILIQEQ---LSKNRIIIEVDAKG 199
Query: 142 YTDKAVVIRC-VRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYL--LPVGIVLKALVDTND 198
+V RK ++++ +K +G F+L+ + +P+ IVLKA+ +D
Sbjct: 200 EIGASVTSSTHERKSKTNIVVK-----HGK----FYLRHNTFADDIPIMIVLKAMGLESD 250
Query: 199 LEIFNHLTCCYDEKYKKEKGAVGS-PLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQP 257
E +GS P + + L E Q + T Q L++ +
Sbjct: 251 QEAVQ---------------MIGSEPAYAMLLGPTLQECQAAGVFTTQQALEYCANKVRV 295
Query: 258 VIDGLQSE--------SYYAVAETVIRDYIFVHL----NDNNDKFNLLIFMLQKLF-SLV 304
V + + S A ++ + H+ D K + M++++ +++
Sbjct: 296 VKTHMTNRPGVRNFGRSRVDEARDILAGVVLAHVPVTSYDFRQKCAYISIMVRRILNAML 355
Query: 305 DHTSVSDNPDSLQNQEILLPGHLITIYLKEKLE----DWLRKGKKLIQDEIENNGKKFDF 360
D T + D+ D N+ + L G LI + ++ + D R+ ++ N +FD
Sbjct: 356 DPTQI-DDKDYYGNKRLELAGQLIALLFEDCFKRLNADLKRQADAVLSKA--NRATQFDI 412
Query: 361 FNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISF 420
L I++ N + +S +K R+ +R G T RL+F+ +
Sbjct: 413 --LKCIRQDTLSNGLEHAISSGNWTVKRFRM---------ERKGVTQVLSRLSFISALGM 461
Query: 421 FRAVHRGASFAGLRTTS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSR 479
+ + F R S R L P WG LCP TP+GE CGL+ ++ V + D
Sbjct: 462 MTRIT--SQFEKTRKVSGPRALQPSQWGMLCPSDTPEGESCGLVKNLALMTHVTTD-DEE 518
Query: 480 GNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVA 539
+R + + G + S P+ VL++G ++GV ++ E
Sbjct: 519 EPLRRLAHALGVEPLTWLNAGEMHS---------PSGAHVLMNGSLLGV--HAQPEAFSH 567
Query: 540 HLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPV----RNISLPSEES 595
R+L+ + +G +S+ A +Y+ + + RP+ R L ++E
Sbjct: 568 AFRKLRRAG--------RIGEF-VSVYTADGCVYISSDGGRVCRPLIIIERGEPLLTQEH 618
Query: 596 QNIELIG--PFEQVFMEIRCPDGGDGGRRNAFPA----------THEEIHPTGMLSVVAN 643
+ G F E N++ A TH EI P +L V A
Sbjct: 619 LDELKDGHRTFNDFLREGLVEYLDVNEENNSYIALYEDEVNDETTHLEIEPFTLLGVCAG 678
Query: 644 LTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGI 703
+ PY HNQSPRN YQC M KQ MG R D +Y L PQ PIV+T T G
Sbjct: 679 IIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLNRMDTLMYLLVYPQKPIVKTKTIELIGY 738
Query: 704 DEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNK-VDR- 761
D G NA +AV++Y+GYD+EDA+++N++S+DRG + + + + N+ +DR
Sbjct: 739 DRLGAGQNATIAVMSYSGYDIEDAIVMNRASLDRGFGRCTVLRKYSAQVKKYSNRTMDRI 798
Query: 762 -GQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPY------CSIYDKTTNS------- 807
G K R + S H ++D DG+ VG I PG+ Y + D N
Sbjct: 799 VGPKDDHR-ANQNSRHHLLDDDGIAAVGGRIKPGDIYVNKQTPVNTRDPMANPHAMPDTM 857
Query: 808 WRTN--SRKG--SESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGV 863
+R+N S KG ES VD V + M + K + R TR P +GDKFSSRHGQKGV
Sbjct: 858 YRSNPLSYKGPAGESAIVDKVLLTMTDEGQFNIKTLV--RQTRRPEVGDKFSSRHGQKGV 915
Query: 864 CSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
C + D PFS G+ PDLI+NPH FPSRMT+ ++E + K
Sbjct: 916 CGIILDQEDFPFSE-RGITPDLIMNPHGFPSRMTVGKMIELLGGK 959
>gi|367054822|ref|XP_003657789.1| hypothetical protein THITE_2123824 [Thielavia terrestris NRRL 8126]
gi|347005055|gb|AEO71453.1| hypothetical protein THITE_2123824 [Thielavia terrestris NRRL 8126]
Length = 1048
Score = 263 bits (673), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 246/930 (26%), Positives = 407/930 (43%), Gaps = 131/930 (14%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR ++Y ++ D+ Y ++R + PVMLK+ +C L GA + ++ +
Sbjct: 3 CRLRDMTYAAPVVVDIA--YSRDRKKIIRRDIPLCRIPVMLKSAKCCLSGATNAQMEIMN 60
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
E + GGYFI+NG E+V +++ +Q ++ + D + G + RK ++
Sbjct: 61 ECPLDPGGYFIINGTEKV---ILIQEQLSKNRVIVEA--DDKGGVSASVTSSTHERKSKT 115
Query: 158 SVTLKLYYL-LNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKE 216
V LK + LN +V + +P+ IVLKAL +D EI L D +Y+ +
Sbjct: 116 YVILKKDRIALNHNVLV--------EPIPIVIVLKALGGLSDYEIM-ELVAGGDARYQDD 166
Query: 217 KGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQ----------------PVID 260
I E + T+ Q L++IG + PV +
Sbjct: 167 ------------FLINFDEATKAGVYTQQQALEYIGVRVKMGGPKKGRPGTAPRRSPVEE 214
Query: 261 GLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQE 320
GL + + +A I D F K + M++++ + + D+ D + N+
Sbjct: 215 GLDALANIIIAHVTIEDLDFY------PKAIYIAMMVRRVLMAAHNPKLVDDRDFVGNKR 268
Query: 321 ILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGT 380
+ L G L+++ ++ + ++ K G FF N + +P I T
Sbjct: 269 LELAGQLLSLLFEDLFKMFVASLK----------GNMEYFFKKPN--RTSAYDPVGPIST 316
Query: 381 SIETMLKTGRLATQTG-LDLQQ----RAGYTVQAERLNFLRFISFFRAVHRGASFAGLRT 435
+++ + A Q+G ++++ RAG T RL+++ + + + F R
Sbjct: 317 QGQSITQGLNRAIQSGNWNVKRFNMNRAGVTHVLSRLSYIAVVGMMTRI--SSQFEKTRK 374
Query: 436 TS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILR 494
S R L P WG LCP TP+GE CGL+ ++ + + + + +R I
Sbjct: 375 VSGPRALQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTNAEEQ-------PVRNWIFG 427
Query: 495 VLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVI--PSSEIEKVVAHLRRLKVSAASVI 552
++ GV I + P + L+G + P + RR +S
Sbjct: 428 LIEGVQPIRMFTG-TEMHKPGTYIIHLNGTPFALTRHPKQFAARFKTMRRRGHISP---- 482
Query: 553 PDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNI-----SLPSEESQNIELIGPFEQV 607
+V + + + +++ T + RP + L E + ++L +
Sbjct: 483 -------FVSIHINEHFSAIHIATDEGRICRPYIIVKDGKSKLKPEHLRLLQLGKATFED 535
Query: 608 FMEIRCPDGGDGGRRN-AFPATHE----------EIHPTGMLSVVANLTPYSDHNQSPRN 656
F++ + D N A A E EI P +L VA L P+ HNQSPRN
Sbjct: 536 FLKRGVIEYLDVNEENDALIAISEDDINQSTTHLEIEPFTILGAVAGLIPFPHHNQSPRN 595
Query: 657 MYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAV 716
YQC M KQ +G R D LY L PQ P+V T T D+ P G NA V V
Sbjct: 596 TYQCAMGKQAIGAIAYNQFNRIDTLLYTLVYPQRPMVITKTIQLIHYDKLPAGQNATVVV 655
Query: 717 LAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSL- 775
++Y+GYD+EDA++LNK+S DRG Q+++ +L N +++++ +++
Sbjct: 656 MSYSGYDIEDALVLNKASCDRGFGRCQVFRKYAAELLQYPNGRKDRLGGIQKDEEGRTIA 715
Query: 776 -HSVIDSDGLPYVGQMIHPGEPYC---SIYDKTTNSWRTNSRKGSES------------- 818
H+ +D DGL VG +H GE + D+T+ S +GS+
Sbjct: 716 KHACLDKDGLAIVGYRVHSGETMIMKETPIDQTSTG--IGSDRGSDDFRPAPVNYRTPDP 773
Query: 819 VFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGV 878
++D V V N++ ++ R TR P +GDKFSSRHGQKGV + DMPFS
Sbjct: 774 AYIDKVMV--SNTEKDTAIIKVQTRQTRRPELGDKFSSRHGQKGVVGIIVDQEDMPFSD- 830
Query: 879 TGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
+G+ PD+I+NPH FPSRMT+ L E + K
Sbjct: 831 SGVVPDIIMNPHGFPSRMTVGKLFECLTGK 860
>gi|290990263|ref|XP_002677756.1| predicted protein [Naegleria gruberi]
gi|284091365|gb|EFC45012.1| predicted protein [Naegleria gruberi]
Length = 1120
Score = 263 bits (671), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 247/927 (26%), Positives = 407/927 (43%), Gaps = 113/927 (12%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVR-ERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
CR ++Y+ ++ VE+ + +++ E + G+ P+ML+ RC L G D ++L L
Sbjct: 68 CRLRDLTYSADIIVSVEYPQIVGNETLIKHEDLSIGRMPIMLQCDRCVLCGKDDKELAKL 127
Query: 97 KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQ 156
E + GGYFI+ G+E+V L ++ + V D+ + T RK +
Sbjct: 128 GECPLDPGGYFIVKGVEKV----CLIQEQLSKNRVIIDL-DKEKQITASVTGSTHYRKSK 182
Query: 157 SSVTLKLYYLLNGSVRLGFWLQGKEYL--LPVGIVLKALVDTNDLEIFNHLTCCYDEKYK 214
+++ +K F+L + +P+ ++ KA+ +D EI + D KY
Sbjct: 183 TNIIIK---------HERFYLDHNSFTKDIPIIMLFKAMGIESDQEIVQLIGS--DRKYI 231
Query: 215 KEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETV 274
G + E V ++ +S +L + + + E + +
Sbjct: 232 DALGPSFEECIREGVYTSEQAIEYMSRYLKLADFRK---------NKPKMEETREILSNI 282
Query: 275 IRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKE 334
I +I V+ + K L M++++ + ++ D+ D N+ + + G L+++ ++
Sbjct: 283 ILCHIPVYKFNYKMKIVYLAIMVKRMIDALHDSANIDDKDYYGNKRLEMAGQLLSLLFED 342
Query: 335 KLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQ 394
+ + + KK ++ + ++ +I + N SK I ++ + +G Q
Sbjct: 343 LFKKFNDEIKKTLEKKTGRRSRRATSTPTEDISSIFNANSSK-ITEGLKNSISSGNWNVQ 401
Query: 395 TGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLLPESWGFLCPVH 453
+RAG T RL+F+ + + + F R S R L P WG LCP
Sbjct: 402 RFK--MERAGVTHVLSRLSFIAALGMMTRI--SSQFEKTRKVSGPRALQPSQWGLLCPSD 457
Query: 454 TPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGP 513
TP+GE CGL+ ++ V + + IR L IGV I +L +
Sbjct: 458 TPEGEGCGLVKNLALLTHVTTDDEEEPIIR---------LAYNIGVEDI-NLISGEELNH 507
Query: 514 PAVLSVLLDGRVVGV--IPSSEIEKVVAHLRRL-KVSA-ASVIPDDLEVGYVPLSLGGAY 569
P+ V L+G ++G+ PS + K+ +RR K+ S+ +DL +
Sbjct: 508 PSSYVVFLNGLILGIHRFPS-QFTKLFRMMRRAGKIHEFVSIFKNDL------------H 554
Query: 570 PGLYLFTSPPKFVRP---VRNISLPSEESQNIEL---IGPFEQVFME--IRCPDGGDGGR 621
+Y+ + + RP V N L + EL I ++ E I D +
Sbjct: 555 KAIYIASDGGRVCRPLIIVENQKLKVTQKHLSELAEGIRTWDDFLKEGLIEYLDVNEENN 614
Query: 622 RN--------AFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQA 673
N TH EI P +L V A L PY HNQSPRN YQC M KQ MG
Sbjct: 615 SNIVFREEDIKLETTHFEIEPFTILGVCAGLVPYPHHNQSPRNTYQCAMGKQAMGAIAYN 674
Query: 674 LKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKS 733
R D L + PQ P+V+T T ++ G NA +AV++Y+GYD+EDA+++NK+
Sbjct: 675 QFNRLDTLLLLMVYPQKPMVKTKTIELIQFEKLSGGQNASIAVMSYSGYDIEDAVVVNKA 734
Query: 734 SVDRGMCHGQIYQTETIDLSDDGNKVD-------RGQKLFRRNKDAKSLHSV--IDSDGL 784
S+DRG + +L N V+ Q+ ++ D K L S +D DG+
Sbjct: 735 SIDRGYGRCIYLKKYVTELKRYHNGVEDVLQPPPNAQQ--AKDMDQKRLKSYQRLDFDGM 792
Query: 785 PYVGQMIHPGEPYCSIY----------------DKTTNSWRTNS-------RKGSESVFV 821
VG+ I+P + Y + + ++N N+ KG SV+V
Sbjct: 793 CAVGERIYPNDMYINRFVAQNTQDNLLGMNTPTPSSSNGAAANTYKPSPIFYKGPCSVYV 852
Query: 822 DYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGM 881
D V + N R TR P +GDKFSSRHGQKGVC + DMPF+ G+
Sbjct: 853 DQVLI-TPNYDRGGYALKYLLRQTRRPELGDKFSSRHGQKGVCGLIVDQQDMPFNE-QGI 910
Query: 882 RPDLIINPHAFPSRMTIAMLLESVAAK 908
PD+I+NPH FPSRMT+ ++E + K
Sbjct: 911 CPDMIMNPHGFPSRMTVGKMIELICGK 937
>gi|325969565|ref|YP_004245757.1| DNA-directed RNA polymerase subunit beta [Vulcanisaeta moutnovskia
768-28]
gi|323708768|gb|ADY02255.1| DNA-directed RNA polymerase subunit beta [Vulcanisaeta moutnovskia
768-28]
Length = 1141
Score = 263 bits (671), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 275/986 (27%), Positives = 438/986 (44%), Gaps = 179/986 (18%)
Query: 15 LVRHHIESFDYMLDEGLSEMFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRE------- 67
LVRH I+SF+ +++ L E+ + + G ++ + ++ G P VRE
Sbjct: 50 LVRHQIDSFNDFVEKKLQEVVNENSLIETEVKGLY---IKLERIEVGKPRVREADASEHI 106
Query: 68 ---------------------------------RFNFGQFPVMLKTRRCHLQGADSQKLV 94
+ G P+M+K++ C+L G Q+L+
Sbjct: 107 LYPMEARLRNLTYAAPLYLTMVLYVNDEEVDRQKVYIGDLPIMIKSKFCNLYGLKRQELI 166
Query: 95 SLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDR--REGYTDKAVVIRCV 152
S E+ + GGYFI+NG ERV S N P F D+ + T+ A VI
Sbjct: 167 SKLEDPDDPGGYFIINGSERVIVSQEDLAPNKP-------FFDKGDKASITNVAKVISIG 219
Query: 153 RKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEK 212
+++VT++ + +G + + F +P I+++AL D +I L D
Sbjct: 220 AGYKTTVTVERHR--DGIIYVTFPAIATR--IPFPIIMRALGLETDEDIV--LAVSDDPD 273
Query: 213 YKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAE 272
+ E L S + + +A D L IG V G E A+
Sbjct: 274 IQNEL------LPSLQFSVQIASTID-------DALDFIGSK---VAIGQPREVRIERAK 317
Query: 273 TVIRDYIFVHLNDNND---KFNLLIF-MLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLI 328
V+ Y HL + K LL+ M++ + + D+ D + N+ + L G L+
Sbjct: 318 QVLDRYFLPHLGATEEARVKKALLVGQMVKGVIEMYLGRRQPDDKDHIANKRVRLVGDLL 377
Query: 329 TIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKT 388
+ K+++QD I++ +E++ S+ S+ T+++
Sbjct: 378 AQLFRAVF-------KQVLQD----------------IRQQLERHYSRGKIPSLVTLVRA 414
Query: 389 G------RLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT---SVR 439
R A TG + R G + +R N L +S R + S RT R
Sbjct: 415 DIITERIRHALATGNWIGGRTGVSQMLDRTNVLSTLSHLRRIVSNLS----RTQPHFEAR 470
Query: 440 KLLPESWGFLCPVHTPDGEPCGLLNHMT--STCRVASYYDSRGNIRDFSKMRTSILRVLI 497
L P WG LC + TP+G+ CGL+ ++ ST V N + KM L
Sbjct: 471 DLHPTQWGRLCAIETPEGQNCGLVKNLALLSTITVGV------NENEVEKM-------LY 517
Query: 498 GVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLE 557
+G++P L K K G V L+GR++G+ +E EK+V +R ++ I ++
Sbjct: 518 DLGVVPIL-KARKEGVKGT-EVYLNGRLIGI--HTEPEKLVGTVREMRRRGQ--ISHEIN 571
Query: 558 VGYVPLSLGGAYPGLYLFTSPPKFVRPVRNI--SLPSEESQNIELIGPFEQVFME----- 610
+ + L + + RP+ I P + ++IE + E + +
Sbjct: 572 IARIQNEY---LDELRVNCDGGRLRRPLLIIEDGKPRLKPEHIERLRKGEWSWSDLISNG 628
Query: 611 -IRCPDGGDGGRRNAFPA----------THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQ 659
I DG + NA A TH EI P+ M+ VA++ PY++HNQSPRN+Y+
Sbjct: 629 IIEYLDGDE--EENALVAINPEEDMSKYTHMEIIPSVMIGAVASVIPYAEHNQSPRNIYE 686
Query: 660 CQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAY 719
MAKQ++GF +FR D + + L P+ P+V T G P G NA+VA+L Y
Sbjct: 687 AAMAKQSLGFPAANYRFRMDSRGHLLIYPERPLVITRGMELNGYLGRPAGQNAVVALLTY 746
Query: 720 TGYDMEDAMILNKSSVDRGMCHGQIYQT-ETIDLSDDGNKVDRGQ--KLFRRNKDAKSLH 776
TGY+MEDA+ILN+SS++RGM ++T ET + G + DR + R +
Sbjct: 747 TGYNMEDAVILNRSSIERGMYRSVFFRTYETEQMRYPGGEEDRIEIPSAEVRGYKGPEAY 806
Query: 777 SVIDSDGL--PYV----GQMI----HPGEPYCSIYDKTTNSWRTNS----RKGSESVFVD 822
+ +D DG+ P V G+++ P Y + +S R +S R+G + + VD
Sbjct: 807 AHLDEDGIVSPEVFVSGGEVLIGKTSPPRFYGVYTEAVVSSARRDSSITVRRGEKGI-VD 865
Query: 823 YVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMR 882
V + N + ++ R R P +GDKF+SRHGQKGV + P DMPF+ G+
Sbjct: 866 SVVITETNEGY--KLVKVKVRELRIPELGDKFASRHGQKGVMGMMIPMQDMPFTE-DGIT 922
Query: 883 PDLIINPHAFPSRMTIAMLLESVAAK 908
PD+I+NPHA PSRMT+ LLES+A K
Sbjct: 923 PDIIVNPHALPSRMTVGQLLESMAGK 948
>gi|171689286|ref|XP_001909583.1| hypothetical protein [Podospora anserina S mat+]
gi|170944605|emb|CAP70716.1| unnamed protein product [Podospora anserina S mat+]
Length = 1160
Score = 262 bits (670), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 251/929 (27%), Positives = 407/929 (43%), Gaps = 127/929 (13%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR +Y ++ D+ Y G +R+ + PVMLK+ +C+L GA++ ++ L
Sbjct: 113 CRLRDATYAAPVVVDI--AYPKNGVRNIRKNVQLCRIPVMLKSSKCYLNGANNARMEELN 170
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
E + GGYFI+ G E+V IL ++ + V +D + G RK ++
Sbjct: 171 ECPLDPGGYFIVGGTEKV----ILIQEQLSKNRVIVE-KDDKGGVQASVTSSTHERKSKT 225
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
V LK +L + ++ +P+ IVLKAL +D +I L D +Y+ +
Sbjct: 226 YVVLKKDRIL---LTHNILVEA----IPIVIVLKALGGLSDYDIM-ELVAGGDSRYQDD- 276
Query: 218 GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQ------------------PVI 259
I + + T+ Q L+++G + P+
Sbjct: 277 -----------FLINFEDAAKAGVYTQQQALEYVGARVKMGGPKKPSPKFSAGPRRNPIE 325
Query: 260 DGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQ 319
+GL + S VA ++D F K + M++++ V + + D+ D + N+
Sbjct: 326 EGLDALSNLIVAHVTVKDLDFY------PKTIYIAMMVRRILMAVHNPELVDDRDFVGNK 379
Query: 320 EILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIG 379
+ L G L+++ ++ L+ ++ + K ++ FF N + +P IG
Sbjct: 380 RLELAGQLLSLLFEDLLKGFIGQLKANMEH----------FFKRPN--RTSAYDPIGPIG 427
Query: 380 TSIETMLKTG-RLATQTGLDL-----QQRAGYTVQAERLNFLRFISFFRAVHRGASFAGL 433
S TM+ G A Q+G RAG T RL+++ + + + F
Sbjct: 428 -SYGTMITQGLNRAIQSGNWTVKRFGMNRAGVTHVLSRLSYIAALGMMTRI--SSQFEKT 484
Query: 434 RTTS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSI 492
R S R L P WG LC TP+GE CGL+ ++ + + K++ +
Sbjct: 485 RKVSGPRALQPSQWGMLCTSDTPEGEACGLVKNLALMTHITTEAGE-------EKVKKCV 537
Query: 493 LRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVI 552
++ G+ +I A + + + ++ K RR V +A
Sbjct: 538 STLIEGIRLIEECSGTEMHEENAFIIHVNGTPYALTLDAAAFTKRFKQFRRRGVLSA--- 594
Query: 553 PDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSE--ESQNIELI----GPFEQ 606
++ + A +++ T + RP + E+ +++L+ FE
Sbjct: 595 -------FIGIHTSHATASIHIATDEGRICRPYIIVENGKSMLEAAHLDLLRHKKATFED 647
Query: 607 VFMEIRCPDGGDGGRRN-AFPATHE----------EIHPTGMLSVVANLTPYSDHNQSPR 655
F++ + D N A A HE EI P +L VA L P+ HNQSPR
Sbjct: 648 -FLKKGVLEYLDVNEENDALIAVHESDINDQTTHLEIEPFTILGAVAGLIPFPHHNQSPR 706
Query: 656 NMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVA 715
N YQC M KQ +GF + R D Y L PQ P+V T T D+ P G NA V
Sbjct: 707 NTYQCAMGKQAIGFIAYNQQNRIDTLHYTLVYPQRPMVITKTIQLIHYDKLPAGQNATVV 766
Query: 716 VLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKD--AK 773
V++Y+GYD+EDA++LNK+S DRG Q+++ T +L N+ +R++D AK
Sbjct: 767 VMSYSGYDIEDALVLNKASCDRGFGRCQVFKKYTTELLQYPNRNKDRLGGVQRDEDGKAK 826
Query: 774 SLHSVIDSDGLPYVGQMIHPGEPYC---SIYDKTTNSWRTN-----------SRKGSESV 819
H+V+D+DGL G + G+ + D+T+ + + S K +
Sbjct: 827 DRHAVLDNDGLATPGMKMKDGDIMIMKETPVDQTSTNIGEDRKITEFRPCPISYKIKDPA 886
Query: 820 FVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVT 879
VD V + K S K +R R TR P +GDKFSSRHGQKGV + D+PFS
Sbjct: 887 IVDKVVITTKESGTPLLK--VRTRQTRRPELGDKFSSRHGQKGVVGIIVDQEDLPFSD-K 943
Query: 880 GMRPDLIINPHAFPSRMTIAMLLESVAAK 908
G+ PD+I+NPH FPSRMT+ L E + K
Sbjct: 944 GLTPDIIMNPHGFPSRMTVGKLFECLTGK 972
>gi|195485554|ref|XP_002091138.1| GE12399 [Drosophila yakuba]
gi|194177239|gb|EDW90850.1| GE12399 [Drosophila yakuba]
Length = 1137
Score = 262 bits (670), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 255/929 (27%), Positives = 405/929 (43%), Gaps = 140/929 (15%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR +Y+ + D+E Y + R G+ P+ML+ C L G +L L
Sbjct: 110 CRLRDTTYSAPITVDIE--YTRGTQRIKRNNLLIGRMPLMLRCSNCALTGKSEFELSKLN 167
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRC----VR 153
E + GGYF++ G E+V +++ +Q M+ F V++C
Sbjct: 168 ECPLDPGGYFVVRGQEKV---ILIQEQLSWNKMLTEDFNG----------VVQCQVTSST 214
Query: 154 KDQSSVTLKL-----YYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCC 208
++ S TL L YYL + S+ +P+ ++ KAL +D EI + +
Sbjct: 215 HEKKSRTLVLSKHGKYYLKHNSMTDD---------IPIVVIFKALGVVSDQEIQSLIGI- 264
Query: 209 YDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIG-----EHFQPVIDGLQ 263
D K + GA L + +L + T+ + L+++G + FQ
Sbjct: 265 -DSKSQNRFGAS------------LLDAYNLKVFTQQRALEYMGSKLVVKRFQSATTKTP 311
Query: 264 SESYYAVAETVIRDYIFVHLNDNNDKFNLLI------FMLQKLFSLVDHTSVSDNPDSLQ 317
SE + T I ++ V D FNL + M++++ + ++ D+ D
Sbjct: 312 SEEARELLLTTILAHVPV------DNFNLQMKAIYVSLMVRRVMAAELDKTLFDDRDYYG 365
Query: 318 NQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQ 377
N+ + L G L+++ ED ++ ++ + N K +K + + Q
Sbjct: 366 NKRLELAGSLLSMMF----EDLFKRMNWELKTIADKNIPKVKAAQFDVVKHMR----AAQ 417
Query: 378 IGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS 437
I +E+ + +G + +RAG T RL+++ + V+ + F R S
Sbjct: 418 ITAGLESAISSGNWTIKRFK--MERAGVTQVLSRLSYISALGMMTRVN--SQFEKTRKVS 473
Query: 438 -VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
R L P WG LCP TP+GE CGL+ ++ + + + R I+
Sbjct: 474 GPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTEVEERP---------VMIVAFN 524
Query: 497 IGVGMIPSLPKLVKSGP---PAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIP 553
GV I + V P P V V ++G V+G+ + + +V +LR ++
Sbjct: 525 AGVEDI----REVSGNPINNPNVFLVFINGNVLGLTLNHK--HLVRNLRYMRRKG----- 573
Query: 554 DDLEVG-YVPLSLGGAYPGLYLFTSPPKFVRP---VRNISLPSEESQNIEL---IGPFEQ 606
+G YV + +Y+ T + RP V N ++ EL I F+
Sbjct: 574 ---RMGSYVSVHTSYTQRCIYIHTDGGRLCRPYVIVENRRPLVKQHHLNELNRGIRKFDD 630
Query: 607 VFMEIRCPDGGDGGRRNAFPA----------THEEIHPTGMLSVVANLTPYSDHNQSPRN 656
++ ++F A TH EI P +L V A L PY HNQSPRN
Sbjct: 631 FLLDGLIEYLDVNEENDSFIAWNEDQIEDRTTHLEIEPFTLLGVCAGLVPYPHHNQSPRN 690
Query: 657 MYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAV 716
YQC M KQ MG K R D +Y+L P P+V++ T D+ P G NA VAV
Sbjct: 691 TYQCAMGKQAMGMIGYNQKNRIDSLMYNLVYPHAPMVKSKTIELTNFDKLPAGQNATVAV 750
Query: 717 LAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKV-DRGQKLFRRNKDAKSL 775
++Y+GYD+EDA+ILNK+S+DRG +Y+ + N+ DR + K +
Sbjct: 751 MSYSGYDIEDALILNKASIDRGYGRCLVYKNSKCTVKRYANQTFDRIMGPMKDALTNKVI 810
Query: 776 --HSVIDSDGLPYVGQ-------MIHPGEPYCSIYD-------KTTNSWRTNSRKGSESV 819
H V+D+DG+ G+ MI+ P + + + + S KG E
Sbjct: 811 FKHDVLDTDGIVAPGEQVQNKQIMINKEMPAVTSMNPLQGQSAQVPYTAVPISYKGPEPS 870
Query: 820 FVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVT 879
+V+ V V + ++ K I R TR P IGDKFSSRHGQKGV + DMPF+
Sbjct: 871 YVERVMVSANSEEDFLIK--ILLRQTRIPEIGDKFSSRHGQKGVTGLIVEQEDMPFNDF- 927
Query: 880 GMRPDLIINPHAFPSRMTIAMLLESVAAK 908
G+ PD+I+NPH FPSRMT+ LE + K
Sbjct: 928 GICPDMIMNPHGFPSRMTVGKTLELLGGK 956
>gi|260807868|ref|XP_002598730.1| hypothetical protein BRAFLDRAFT_282817 [Branchiostoma floridae]
gi|229284004|gb|EEN54742.1| hypothetical protein BRAFLDRAFT_282817 [Branchiostoma floridae]
Length = 1137
Score = 261 bits (667), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 253/927 (27%), Positives = 398/927 (42%), Gaps = 122/927 (13%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR ++Y+ + D+E Y VVR G+ P+ML++ C L G +L LK
Sbjct: 94 CRLRDMTYSAPITVDIE--YTRGNQRVVRNNLPIGRMPIMLRSSNCVLTGKSPSELAKLK 151
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
E + GGYF++ G+E+V +++ +Q M+ TD+ +I C +
Sbjct: 152 ECPLDPGGYFLVKGVEKV---ILIQEQLSKNRMIVE---------TDRKGLISCSVTSST 199
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYL--LPVGIVLKALVDTNDLEIFNHLTCCYDEKYKK 215
Y++ + + ++L+ + +P+ I KA+ +D EI +
Sbjct: 200 HERKTKTYVVQKNAK--YFLKHNTFTEDIPIAIAFKAMGVESDQEIVQLI---------- 247
Query: 216 EKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVI 275
G + + V L E + T+ Q L+ IG + G + A V+
Sbjct: 248 --GTDARTMAA--VAPSLEECHKAQVFTQKQALRFIGVKVRRSRWGGPKRTRVEEAREVL 303
Query: 276 RDYIFVHLNDNNDKFNL----LIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIY 331
I H+ F L L M++++ V D D N+ + L G L+ +
Sbjct: 304 HSTILAHVPVVKFNFRLKCVYLALMVRRVVQAQAQDRVDDR-DYYGNKRLELAGQLLALL 362
Query: 332 LKEKLEDWLRKGKKLIQDEI-ENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGR 390
++ + + + KK+ I + +FD I K M ++ QI + + TG
Sbjct: 363 FEDLFKKFNAELKKIADQTIPKPRAAQFD------IVKHMRQD---QITNGLVNAISTGN 413
Query: 391 LATQT-GLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLLPESWGF 448
+ +D RAG T RL+F+ + + + F R S R L P WG
Sbjct: 414 WTVKRFKMD---RAGVTQVLSRLSFISALGMMTRI--SSQFEKTRKVSGPRSLQPSQWGM 468
Query: 449 LCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKL 508
LCP TP+GE CGL+ ++ + + D + L +GV + L
Sbjct: 469 LCPSDTPEGEACGLVKNLALMTHITT---------DSEEQPIQRLAFNLGVEDVHLLSGE 519
Query: 509 VKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSA-----ASVIPDDLEVGYVPL 563
+ + L V+L+G ++GVI + + ++ R+++ + S+ P+
Sbjct: 520 ELNSQDSYL-VMLNGNILGVI--CDHQHLIRSFRKMRRAGYINEFVSICPNHEHRCVNIA 576
Query: 564 SLGGAYPGLYLFTSPPK--------------------FVRP--VRNISLPSEESQNIELI 601
S G Y+ + + F+R V + + E NI L
Sbjct: 577 SDAGRVCRPYIIVTNGRPMVTNRHIEELTKGYRAFEDFLREGLVEYLDVNEENDCNITL- 635
Query: 602 GPFEQVFMEIRCPDGGDGGRRNAFPATHEEIH----PTGMLSVVANLTPYSDHNQSPRNM 657
+E +I D F + + H P +L V A L PY HNQSPRN
Sbjct: 636 --YE---ADITREDETTLEHLQCFVSCRDTTHLEIEPFTILGVCAGLIPYPHHNQSPRNT 690
Query: 658 YQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVL 717
YQC M KQ MG R D LY L PQ P+V+T T ++ P G NA VAV+
Sbjct: 691 YQCAMGKQAMGAIGYNQHNRIDTLLYLLVFPQRPMVKTKTIELIDYEKLPAGQNATVAVM 750
Query: 718 AYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKV-DR--GQKLFRRNKDAKS 774
+Y+GYD+EDA+ILNKSSVDRG +Y+ + L N+ DR G + +
Sbjct: 751 SYSGYDIEDALILNKSSVDRGFGRCLVYRKQNCTLKRYSNQTFDRVMGPMVDAATRKPIW 810
Query: 775 LHSVIDSDGLPYVGQMIHPGEPYC--SIYDKTTNSWRTNSR-----------KGSESVFV 821
H ++D DG+ G+ + + S+ +T N +T + KG +V
Sbjct: 811 RHEILDVDGICAPGERVQNKQVLVNKSMPKQTMNPVQTPGQQPEYQDVPITYKGPVDSYV 870
Query: 822 DYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGM 881
+ V V + K + R TR P IGDKFSSRHGQKGVC + DMPF+ G+
Sbjct: 871 ETVLVSSNQEEAFLIK--MLLRQTRRPEIGDKFSSRHGQKGVCGLIVNQEDMPFTD-QGI 927
Query: 882 RPDLIINPHAFPSRMTIAMLLESVAAK 908
PD+I+NPH FPSRMT+ L+E +A K
Sbjct: 928 CPDIIMNPHGFPSRMTVGKLMELLAGK 954
>gi|21464338|gb|AAM51972.1| LD14594p [Drosophila melanogaster]
Length = 1146
Score = 261 bits (667), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 254/929 (27%), Positives = 404/929 (43%), Gaps = 140/929 (15%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR +Y+ + D+E Y + R G+ P+ML+ C L G +L L
Sbjct: 119 CRLRDTTYSAPITVDIE--YTRGTQRIKRNNLLIGRMPLMLRCSNCALTGKSEFELSKLN 176
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRC----VR 153
E + GGYF++ G E+V +++ +Q M+ F V++C
Sbjct: 177 ECPLDPGGYFVVRGQEKV---ILIQEQLSWNKMLTEDFNG----------VVQCQVTSST 223
Query: 154 KDQSSVTLKL-----YYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCC 208
++ S TL L YYL + S+ +P+ ++ KAL +D EI + +
Sbjct: 224 HEKKSRTLVLSKHGKYYLKHNSMTDD---------IPIVVIFKALGVVSDQEIQSLIGI- 273
Query: 209 YDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIG-----EHFQPVIDGLQ 263
D K + GA L + +L + T+ + L+++G + FQ
Sbjct: 274 -DSKSQNRFGAS------------LIDAYNLKVFTQQRALEYMGSKLVVKRFQSATTKTP 320
Query: 264 SESYYAVAETVIRDYIFVHLNDNNDKFNLLI------FMLQKLFSLVDHTSVSDNPDSLQ 317
SE + T I ++ V D FNL + M++++ + ++ D+ D
Sbjct: 321 SEEARELLLTTILAHVPV------DNFNLQMKAIYVSMMVRRVMAAELDKTLFDDRDYYG 374
Query: 318 NQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQ 377
N+ + L G L+++ ED ++ ++ + N K +K + + Q
Sbjct: 375 NKRLELAGSLLSMMF----EDLFKRMNWELKTIADKNIPKVKAAQFDVVKHMR----AAQ 426
Query: 378 IGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS 437
I +E+ + +G + +RAG T RL+++ + V+ + F R S
Sbjct: 427 ITAGLESAISSGNWTIKRFK--MERAGVTQVLSRLSYISALGMMTRVN--SQFEKTRKVS 482
Query: 438 -VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
R L P WG LCP TP+GE CGL+ ++ + + + R I+
Sbjct: 483 GPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTEVEERP---------VMIVAFN 533
Query: 497 IGVGMIPSLPKLVKSGP---PAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIP 553
GV I + V P P V V ++G V+G+ + + +V +LR ++
Sbjct: 534 AGVEDI----REVSGNPINNPNVFLVFINGNVLGLTLNHK--HLVRNLRYMRRKG----- 582
Query: 554 DDLEVG-YVPLSLGGAYPGLYLFTSPPKFVRP---VRNISLPSEESQNIEL---IGPFEQ 606
+G YV + +Y+ T + RP V N ++ EL I F+
Sbjct: 583 ---RMGSYVSVHTSYTQRCIYIHTDGGRLCRPYVIVENRRPLVKQHHLDELNRGIRKFDD 639
Query: 607 VFMEIRCPDGGDGGRRNAFPA----------THEEIHPTGMLSVVANLTPYSDHNQSPRN 656
++ ++F A TH EI P +L V A L PY HNQSPRN
Sbjct: 640 FLLDGLIEYLDVNEENDSFIAWNEDQIEDRTTHLEIEPFTLLGVCAGLVPYPHHNQSPRN 699
Query: 657 MYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAV 716
YQC M KQ MG K R D +Y+L P P+V++ T D+ P G NA VAV
Sbjct: 700 TYQCAMGKQAMGMIGYNQKNRIDSLMYNLVYPHAPMVKSKTIELTNFDKLPAGQNATVAV 759
Query: 717 LAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKV-DRGQKLFRRNKDAKSL 775
++Y+GYD+EDA+ILNK+S+DRG +Y+ + N+ DR + K +
Sbjct: 760 MSYSGYDIEDALILNKASIDRGYGRCLVYKNSKCTVKRYANQTFDRIMGPMKDALTNKVI 819
Query: 776 --HSVIDSDGLPYVGQ-------MIHPGEPYCSIYD-------KTTNSWRTNSRKGSESV 819
H V+D+DG+ G+ MI+ P + + + + S KG E
Sbjct: 820 FKHDVLDTDGIVAPGEQVQNKQIMINKEMPAVTSMNPLQGQSAQVPYTAVPISYKGPEPS 879
Query: 820 FVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVT 879
+++ V V ++ K I R TR P IGDKFSSRHGQKGV + DMPF+
Sbjct: 880 YIERVMVSANAEEDFLIK--ILLRQTRIPEIGDKFSSRHGQKGVTGLIVEQEDMPFNDF- 936
Query: 880 GMRPDLIINPHAFPSRMTIAMLLESVAAK 908
G+ PD+I+NPH FPSRMT+ LE + K
Sbjct: 937 GICPDMIMNPHGFPSRMTVGKTLELLGGK 965
>gi|194883820|ref|XP_001975995.1| GG20240 [Drosophila erecta]
gi|190659182|gb|EDV56395.1| GG20240 [Drosophila erecta]
Length = 1137
Score = 261 bits (667), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 255/929 (27%), Positives = 404/929 (43%), Gaps = 140/929 (15%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR +Y+ + D+E Y + R G+ P+ML+ C L G +L L
Sbjct: 110 CRLRDTTYSAPITVDIE--YTRGTQRIKRNNLLIGRMPLMLRCSNCALTGKSEFELSKLN 167
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRC----VR 153
E + GGYF++ G E+V +++ +Q M+ F V++C
Sbjct: 168 ECPLDPGGYFVVRGQEKV---ILIQEQLSWNKMLTEDFNG----------VVQCQVTSST 214
Query: 154 KDQSSVTLKL-----YYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCC 208
++ S TL L YYL + S+ +P+ ++ KAL +D EI + +
Sbjct: 215 HEKKSRTLVLSKHGKYYLKHNSMTDD---------IPIVVIFKALGVVSDQEIQSLIGI- 264
Query: 209 YDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIG-----EHFQPVIDGLQ 263
D K + GA L + +L + T+ + L+++G + FQ
Sbjct: 265 -DSKSQNRFGAS------------LLDAYNLKVFTQQRALEYMGSKLVVKRFQSATTKTP 311
Query: 264 SESYYAVAETVIRDYIFVHLNDNNDKFNLLI------FMLQKLFSLVDHTSVSDNPDSLQ 317
SE + T I ++ V D FNL + M++++ + ++ D+ D
Sbjct: 312 SEEARELLLTTILAHVPV------DNFNLQMKAIYVSLMVRRVMAAELDKTLFDDRDYYG 365
Query: 318 NQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQ 377
N+ + L G L+++ ED ++ ++ + N K +K + + Q
Sbjct: 366 NKRLELAGSLLSMMF----EDLFKRMNWELKTIADKNIPKVKAAQFDVVKHMR----AAQ 417
Query: 378 IGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS 437
I +E+ + +G + +RAG T RL+++ + V+ + F R S
Sbjct: 418 ITAGLESAISSGNWTIKRFK--MERAGVTQVLSRLSYISALGMMTRVN--SQFEKTRKVS 473
Query: 438 -VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
R L P WG LCP TP+GE CGL+ ++ + + + R I+
Sbjct: 474 GPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTEVEERP---------VMIVAFN 524
Query: 497 IGVGMIPSLPKLVKSGP---PAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIP 553
GV I + V P P V V ++G V+G+ + + +V +LR ++
Sbjct: 525 AGVEDI----REVSGNPINNPNVFLVFINGNVLGLTLNHK--HLVRNLRYMRRKG----- 573
Query: 554 DDLEVG-YVPLSLGGAYPGLYLFTSPPKFVRP---VRNISLPSEESQNIEL---IGPFEQ 606
+G YV + +Y+ T + RP V N ++ EL I F+
Sbjct: 574 ---RMGSYVSVHTSYTQRCIYIHTDGGRLCRPYVIVENRRPLVKQHHLDELNRGIRKFDD 630
Query: 607 VFMEIRCPDGGDGGRRNAFPA----------THEEIHPTGMLSVVANLTPYSDHNQSPRN 656
++ ++F A TH EI P +L V A L PY HNQSPRN
Sbjct: 631 FLLDGLIEYLDVNEENDSFIAWNEDQIEDRTTHLEIEPFTLLGVCAGLVPYPHHNQSPRN 690
Query: 657 MYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAV 716
YQC M KQ MG K R D +Y+L P P+V++ T D+ P G NA VAV
Sbjct: 691 TYQCAMGKQAMGMIGYNQKNRIDSLMYNLVYPHAPMVKSKTIELTNFDKLPAGQNATVAV 750
Query: 717 LAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKV-DRGQKLFRRNKDAKSL 775
++Y+GYD+EDA+ILNK+S+DRG +Y+ + N+ DR + K +
Sbjct: 751 MSYSGYDIEDALILNKASIDRGYGRCLVYKNSKCTVKRYANQTFDRIMGPMKDALTNKVI 810
Query: 776 --HSVIDSDGLPYVGQ-------MIHPGEPYCSIYD-------KTTNSWRTNSRKGSESV 819
H V+D+DG+ G+ MI+ P + + + + S KG E
Sbjct: 811 FKHDVLDTDGIVAPGEQVQNKQIMINKEMPAVTSMNPLQGQSAQVPYTAVPISYKGPEPS 870
Query: 820 FVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVT 879
+V+ V V ++ K I R TR P IGDKFSSRHGQKGV + DMPF+
Sbjct: 871 YVERVMVSANAEEDFLIK--ILLRQTRIPEIGDKFSSRHGQKGVTGLIVEQEDMPFNDF- 927
Query: 880 GMRPDLIINPHAFPSRMTIAMLLESVAAK 908
G+ PD+I+NPH FPSRMT+ LE + K
Sbjct: 928 GICPDMIMNPHGFPSRMTVGKTLELLGGK 956
>gi|331225399|ref|XP_003325370.1| DNA-directed RNA polymerase III subunit RPC2 [Puccinia graminis f.
sp. tritici CRL 75-36-700-3]
gi|309304360|gb|EFP80951.1| DNA-directed RNA polymerase III subunit RPC2 [Puccinia graminis f.
sp. tritici CRL 75-36-700-3]
Length = 1272
Score = 261 bits (667), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 247/925 (26%), Positives = 400/925 (43%), Gaps = 124/925 (13%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR I+Y+ + V QY V+ + G+ P+ML++ +C L G +L +
Sbjct: 235 CRLRDITYSAPI--SVTIQYTKGNKRVLSKGIPIGRIPIMLRSNKCVLTGKSDAELAKMT 292
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
E + GGYF++ G E+ VIL ++ + + D R+G T A V + +S
Sbjct: 293 ECPLDPGGYFVVKGTEK----VILVQEQLSKNRILIE-TDSRKG-TIMASVTSSTHERKS 346
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
Y++ + ++ + +P+ I LKA T+D E+ + C ++ Y+
Sbjct: 347 KT-----YVVTKNSKVYLKHNSIQEEIPIAIALKAYGITSDREVV-QIVCGNNDDYRAA- 399
Query: 218 GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAE---TV 274
I + + + T+ Q L +IG+ + V G + + E V
Sbjct: 400 -----------FSICMEHCHEAGVFTQKQALAYIGKSVKMVKKGPVAGPKRPLTEEALEV 448
Query: 275 IRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITI 330
+ + H+ +N K L M +++ + + + D+ D + N+ + L G L+++
Sbjct: 449 LSTVVLAHVPADNLNLQPKAIYLAVMARRVVQAMANPKLVDDRDYVGNKRLELAGQLLSL 508
Query: 331 YLKEKLEDWLRKGKKLIQDEI---ENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLK 387
L E L KL D++ N +FD N + + I +
Sbjct: 509 -LFEDLFKKFNTDLKLNIDKVLKKPNRTTEFDAINQFRMH-------ADHISNGFIRAIS 560
Query: 388 TGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLLPESW 446
TG + + +RAG T RL+++ + + + F R S R L P W
Sbjct: 561 TGNWSIKRF--KMERAGITHVLSRLSYISALGMMTRI--SSQFEKTRKVSGPRALQPSQW 616
Query: 447 GFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGM--IPS 504
G LCP TP+GE CGL+ ++ + + D I V +G I S
Sbjct: 617 GMLCPSDTPEGEACGLVKNLALMTHITTDTDEE-----------PIWNVAYTIGCEDISS 665
Query: 505 LPKLVKSGPPAVLSVLLDGRVVGVIPSSE-IEKVVAHLRRL-KVSAASVIPDDLEVGYVP 562
+ P + V ++G ++G+ S E +V RR K+S +V
Sbjct: 666 VTGTELYLPRHYI-VFINGNILGLTRSPERFVEVFRQFRRAGKISE-----------FVS 713
Query: 563 LSLGGAYPGLYLFTSPPKFVRPVRNISLPSE--ESQNIELIGPFEQVFME---------I 611
+ + + + T + RP+ ++ ++ +IE + E F + +
Sbjct: 714 IYMNADQQTVNIATDGGRICRPMIIVTNGDSMVKTHHIEKLKAGELSFDDFLSQGLIEYL 773
Query: 612 RCPDGGDGGRRNAFPATHE----------EIHPTGMLSVVANLTPYSDHNQSPRNMYQCQ 661
C + D +F A +E EI P +L VA L PY HNQSPRN YQC
Sbjct: 774 DCNEEND-----SFIALYEEDIDSYTTHLEIEPFTLLGAVAGLIPYPHHNQSPRNTYQCA 828
Query: 662 MAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTG 721
M KQ +G R D LY + P P+VRT T G D+ P G NA VAV++Y+G
Sbjct: 829 MGKQAIGVIAYNQLHRIDTLLYLMVYPHHPMVRTKTIELVGYDKLPAGQNATVAVMSYSG 888
Query: 722 YDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSV--I 779
YD+EDA+ILNK+S+DRG Q+++ T + N R+ + + L
Sbjct: 889 YDIEDALILNKASLDRGFGRCQVFRKATAMIKRYPNGTYDRIADPPRDPEGQVLEKWKPC 948
Query: 780 DSDGLPYVGQMIHPGEPYCSIYD-------------KTTNSWRTN--SRKGSESVFVDYV 824
D G+ VG ++ G Y + T SW + +G+ ++D V
Sbjct: 949 DDGGVADVGMKVYNGNVYINKQSPSNANDNSVGAGAATVTSWANTPMTYRGTVPSYIDKV 1008
Query: 825 AV-DMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRP 883
V D ++ + L + R TR P +GDKFSSRHGQKGVC + DMPF+ G P
Sbjct: 1009 MVTDTESDQTL---VKVLLRQTRRPELGDKFSSRHGQKGVCGLIVQQEDMPFND-RGTCP 1064
Query: 884 DLIINPHAFPSRMTIAMLLESVAAK 908
D+I+NPH FPSRMT+ +LE ++ K
Sbjct: 1065 DIIMNPHGFPSRMTVGKMLELLSGK 1089
>gi|195333588|ref|XP_002033472.1| GM21328 [Drosophila sechellia]
gi|195582601|ref|XP_002081115.1| GD10835 [Drosophila simulans]
gi|194125442|gb|EDW47485.1| GM21328 [Drosophila sechellia]
gi|194193124|gb|EDX06700.1| GD10835 [Drosophila simulans]
Length = 1137
Score = 261 bits (667), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 254/929 (27%), Positives = 404/929 (43%), Gaps = 140/929 (15%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR +Y+ + D+E Y + R G+ P+ML+ C L G +L L
Sbjct: 110 CRLRDTTYSAPITVDIE--YTRGTQRIKRNNLLIGRMPLMLRCSNCALTGKSEFELSKLN 167
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRC----VR 153
E + GGYF++ G E+V +++ +Q M+ F V++C
Sbjct: 168 ECPLDPGGYFVVRGQEKV---ILIQEQLSWNKMLTEDFNG----------VVQCQVTSST 214
Query: 154 KDQSSVTLKL-----YYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCC 208
++ S TL L YYL + S+ +P+ ++ KAL +D EI + +
Sbjct: 215 HEKKSRTLVLSKHGKYYLKHNSMTDD---------IPIVVIFKALGVVSDQEIQSLIGL- 264
Query: 209 YDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIG-----EHFQPVIDGLQ 263
D K + GA L + +L + T+ + L+++G + FQ
Sbjct: 265 -DSKSQNRFGAS------------LIDAYNLKVFTQQRALEYMGSKLVVKRFQSATTKTP 311
Query: 264 SESYYAVAETVIRDYIFVHLNDNNDKFNLLI------FMLQKLFSLVDHTSVSDNPDSLQ 317
SE + T I ++ V D FNL + M++++ + ++ D+ D
Sbjct: 312 SEEARELLLTTILAHVPV------DNFNLQMKAIYVSMMVRRVMAAELDKTLFDDRDYYG 365
Query: 318 NQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQ 377
N+ + L G L+++ ED ++ ++ + N K +K + + Q
Sbjct: 366 NKRLELAGSLLSMMF----EDLFKRMNWELKTIADKNIPKVKAAQFDVVKHMR----AAQ 417
Query: 378 IGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS 437
I +E+ + +G + +RAG T RL+++ + V+ + F R S
Sbjct: 418 ITAGLESAISSGNWTIKRFK--MERAGVTQVLSRLSYISALGMMTRVN--SQFEKTRKVS 473
Query: 438 -VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
R L P WG LCP TP+GE CGL+ ++ + + + R I+
Sbjct: 474 GPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTEVEERP---------VMIVAFN 524
Query: 497 IGVGMIPSLPKLVKSGP---PAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIP 553
GV I + V P P V V ++G V+G+ + + +V +LR ++
Sbjct: 525 AGVEDI----REVSGNPINNPNVFLVFINGNVLGLTLNHK--HLVRNLRYMRRKG----- 573
Query: 554 DDLEVG-YVPLSLGGAYPGLYLFTSPPKFVRP---VRNISLPSEESQNIEL---IGPFEQ 606
+G YV + +Y+ T + RP V N ++ EL I F+
Sbjct: 574 ---RMGSYVSVHTSYTQRCIYIHTDGGRLCRPYVIVENRRPLVKQHHLDELNRGIRKFDD 630
Query: 607 VFMEIRCPDGGDGGRRNAFPA----------THEEIHPTGMLSVVANLTPYSDHNQSPRN 656
++ ++F A TH EI P +L V A L PY HNQSPRN
Sbjct: 631 FLLDGLIEYLDVNEENDSFIAWNEDQIEDRTTHLEIEPFTLLGVCAGLVPYPHHNQSPRN 690
Query: 657 MYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAV 716
YQC M KQ MG K R D +Y+L P P+V++ T D+ P G NA VAV
Sbjct: 691 TYQCAMGKQAMGMIGYNQKNRIDSLMYNLVYPHAPMVKSKTIELTNFDKLPAGQNATVAV 750
Query: 717 LAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKV-DRGQKLFRRNKDAKSL 775
++Y+GYD+EDA+ILNK+S+DRG +Y+ + N+ DR + K +
Sbjct: 751 MSYSGYDIEDALILNKASIDRGYGRCLVYKNSKCTVKRYANQTFDRIMGPMKDALTNKVI 810
Query: 776 --HSVIDSDGLPYVGQ-------MIHPGEPYCSIYD-------KTTNSWRTNSRKGSESV 819
H V+D+DG+ G+ MI+ P + + + + S KG E
Sbjct: 811 FKHDVLDTDGIVAPGEQVQNKQIMINKEMPAVTSMNPLQGQSAQVPYTAVPISYKGPEPS 870
Query: 820 FVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVT 879
+++ V V ++ K I R TR P IGDKFSSRHGQKGV + DMPF+
Sbjct: 871 YIERVMVSANAEEDFLIK--ILLRQTRIPEIGDKFSSRHGQKGVTGLIVEQEDMPFNDF- 927
Query: 880 GMRPDLIINPHAFPSRMTIAMLLESVAAK 908
G+ PD+I+NPH FPSRMT+ LE + K
Sbjct: 928 GICPDMIMNPHGFPSRMTVGKTLELLGGK 956
>gi|308799767|ref|XP_003074664.1| RNA polymerase III subunit RPC2 (ISS) [Ostreococcus tauri]
gi|116000835|emb|CAL50515.1| RNA polymerase III subunit RPC2 (ISS) [Ostreococcus tauri]
Length = 2569
Score = 261 bits (667), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 271/1015 (26%), Positives = 434/1015 (42%), Gaps = 196/1015 (19%)
Query: 9 FEPLRELVRHHIESFDYMLDEGLSEMF--------------------------------- 35
F +R LVR HI+SF+Y+++E + ++
Sbjct: 56 FLKVRGLVRQHIDSFNYLVNEEIKKIVRAKANERVTCDSDPNFYLKYTNIHVGRPSVEED 115
Query: 36 --------DHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFN------FGQFPVMLKTR 81
CR ++Y + DVE Y V R++ N G+ P+ML++
Sbjct: 116 YVVEEITPQQCRLRDMTYAAPITVDVE--YTRGKEIVTRQQKNGVGGIVIGRIPLMLRSS 173
Query: 82 RCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREG 141
RC L G + ++L L E + GGYFI+ G+E+V +++ +Q +S R +G
Sbjct: 174 RCVLTGKNEEELARLGECPLDPGGYFIVKGVEKV---ILIQEQ---LSKNRIIIDVDNKG 227
Query: 142 YTDKAVVIRC-VRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYL--------LPVGIVLKA 192
+V RK ++++ +K GK YL + + IVLKA
Sbjct: 228 EIGASVTSSTHERKSKTNIVVK---------------HGKLYLRHNTCADDIAIMIVLKA 272
Query: 193 LVDTNDLEIFNHLTCCYDEKYKKEKGAVGS-PLVSERVKIILAEVQDLSLTTRLQCLQHI 251
+ +D E + +GS P + + L E + T Q L++
Sbjct: 273 MGMESDQEAVH---------------MIGSDPTYAMLLAPTLQECHASGIFTMQQALEYC 317
Query: 252 GEHFQPV--------IDGLQSESYYAVAET------VIRDYIFVHLNDNNDKFNLLIFML 297
+ V I G ++ + E V+ ++ V D K + M+
Sbjct: 318 ASKVRVVKMQSPRTQIGGARTYGRSRIDEARDILAGVVLAHVPVVAYDFRQKCAYISIMV 377
Query: 298 QKLF-SLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLE----DWLRKGKKLIQDEIE 352
+++ +L+D T V D+ D N+ + L G LI + ++ + D R+ ++
Sbjct: 378 RRILNALLDPTQV-DDKDYYGNKRLELAGQLIALLFEDCFKRLNADLKRQADAVLSKA-- 434
Query: 353 NNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERL 412
N +FD L I++ N + +S +K R+ +R G T RL
Sbjct: 435 NRATQFDI--LKCIRQDTLSNGLEHAISSGNWTVKRFRM---------ERKGVTQVLSRL 483
Query: 413 NFLRFISFFRAVHRGASFAGLRTTS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCR 471
+F+ + + + F R S R L P WG LCP TP+GE CGL+ ++
Sbjct: 484 SFISALGMMTRIT--SQFEKTRKVSGPRALQPSQWGMLCPSDTPEGESCGLVKNLALMTH 541
Query: 472 VASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPS 531
V + D +R + + G + S P VL++G ++GV
Sbjct: 542 VTTD-DEEEPLRRLAHALGVEPLTWLNAGEMHS---------PQGAHVLMNGSLLGV--H 589
Query: 532 SEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISL- 590
++ E R+L+ + VG +S+ A +Y+ + + RP+ I
Sbjct: 590 AQPEAFAHAFRKLRRAG--------RVGEF-VSVYAADGCVYISSDGGRVCRPLIIIERG 640
Query: 591 -PSEESQNIELIGPFEQVFME------IRCPDGGDGGRRNAFPA----------THEEIH 633
P +++E + + F + + D + +++ A TH EI
Sbjct: 641 EPLLTQEHLEELKDGHRTFTDFLREGLVEYLDVNE--ENDSYIALYEDEMNEETTHLEIE 698
Query: 634 PTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIV 693
P +L V A + PY HNQSPRN YQC M KQ MG R D +Y L PQ PIV
Sbjct: 699 PFTLLGVCAGIIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLNRMDTLMYLLVYPQKPIV 758
Query: 694 RTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLS 753
+T T G D G NA +AV++Y+GYD+EDA+++N++S+DRG + + + +
Sbjct: 759 KTKTIELIGYDRLGAGQNATIAVMSYSGYDIEDAIVMNRASLDRGFGRCTVLRKYSTQVK 818
Query: 754 DDGNK-VDR--GQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYC------SIYDKT 804
N+ +DR G K +R + H ++D DG+ VG I PG+ Y + D
Sbjct: 819 KYSNRTMDRIIGPKEDQRANENGRYH-LLDGDGIAAVGGRIKPGDIYVNKQSPINTRDPM 877
Query: 805 TNS-------WRTN--SRKG--SESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDK 853
N +R+N S KG E+ VD V + M + K + R TR P +GDK
Sbjct: 878 ANPHGMPDTMYRSNPLSYKGPPGETAIVDKVLLTMTDEGQFNIKTLV--RQTRRPEVGDK 935
Query: 854 FSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
FSSRHGQKGVC + D PFS G+ PDLI+NPH FPSRMT+ ++E + K
Sbjct: 936 FSSRHGQKGVCGVILDQEDFPFSE-RGITPDLIMNPHGFPSRMTVGKMIELLGGK 989
>gi|357610728|gb|EHJ67119.1| hypothetical protein KGM_22531 [Danaus plexippus]
Length = 1085
Score = 261 bits (666), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 252/934 (26%), Positives = 399/934 (42%), Gaps = 166/934 (17%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVV-RERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
CR ++Y+ + D+E Y+ V+ + + G+ P+ML++ C L +L L
Sbjct: 74 CRLRDMTYSAPITVDIE--YIRGNQRVIFKNKQLIGRMPLMLRSSNCVLTNKSDFELAQL 131
Query: 97 KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQ 156
E + GGYFI+ G E+V +++ +Q M+ F+ A+ +
Sbjct: 132 NECPHDPGGYFIIRGQEKV---ILIQEQLSRNRMIVDEFKG--------AIQCQVTSSTH 180
Query: 157 SSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKE 216
T + + NG L + +P+ +V KA+ +D EI
Sbjct: 181 EKKTRTIVIVKNGKYVLRHNALSDD--IPICVVFKAMGICSDQEIMQ------------- 225
Query: 217 KGAVGSP-LVSERVKIILAEVQDLSLTTRLQCLQHIG-----EHFQPVIDGLQSESYYAV 270
VG+ +++++ + + +L + T+ Q L +IG + FQ ++
Sbjct: 226 --LVGTDDAIAKKMAPCIMDCHNLKVFTQNQALAYIGSKLKVKRFQSATSKFRTP--VDE 281
Query: 271 AETVIRDYIFVHLNDNNDKFNL----LIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGH 326
A +I I H+ N F + L M++++ + + D+PD N+ + L G
Sbjct: 282 ARDLIATTILAHVVVENYNFYVKAIYLAIMVKRVIEAETNKAAIDDPDYYGNKRLELAGS 341
Query: 327 LITIYLKE--KLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKV-MEKNPSKQIGTSIE 383
L+ + ++ K +W K I D+I K F IK+ ME++ Q+
Sbjct: 342 LLALMFEDLFKRFNWELKS---IADKIIPRVKAAPFDGNWTIKRFKMERHGVTQV----- 393
Query: 384 TMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLP 443
RL+ + L + R + R + + R L P
Sbjct: 394 ----LSRLSYISALGMMTRVNSQFEKTR----------------------KVSGPRSLQP 427
Query: 444 ESWGFLCPVHTPDGEPCGL------LNHMTSTCRVASYYDSRGNI-RDFSKMRTSILRVL 496
WG LCP TP+GE CGL + H+T+ C S G I R +R+L
Sbjct: 428 SQWGMLCPSDTPEGEACGLVKNLALMTHITTEC-------SEGPISRLACNAGVEDVRLL 480
Query: 497 IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDL 556
G + PA+ V L+G ++GV + E +K++ R + L
Sbjct: 481 GGEEI----------NHPALYMVFLNGNILGV--TREYKKLIKIFRMFRRRG-------L 521
Query: 557 EVGYVPLSLGGAYPGLYLFTSPPKFVRP--VRNISLPSEESQNI-EL---IGPFEQVFME 610
+V + +Y+ + + RP + LP + +I EL I F Q F+
Sbjct: 522 ISAFVSIYPNHNQRTVYICSDGGRLCRPYIIVEKGLPLVQQHHINELNRGIRKF-QDFLN 580
Query: 611 IRCPDGGDGGRRN------------AFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMY 658
+ D N + TH EI P +L V A L PY HNQSPRN Y
Sbjct: 581 DGLIEYLDVNEENDSHIATVETEIDPYVTTHLEIEPFTILGVCAGLVPYPHHNQSPRNTY 640
Query: 659 QCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLA 718
QC M KQ MG K R D +Y+L PQ P+V+T T D+ P G NA VAV++
Sbjct: 641 QCAMGKQAMGTIGYNQKNRIDTLMYNLVYPQCPMVKTRTIELTNFDKLPAGQNATVAVMS 700
Query: 719 YTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKS---- 774
Y+GYD+EDA+ILN++S+DRG +Y++ + N+ ++ ++DA +
Sbjct: 701 YSGYDIEDALILNRASIDRGYGRCLVYKSAKTIMKRYSNQTS--DRILGPSRDANTGKVI 758
Query: 775 -LHSVIDSDGLPYVGQM-------------------IHPGEPYCSIYDKTTNSWRTNSRK 814
H V+DSDG+ G+M I+ G+P Y ++ K
Sbjct: 759 KAHEVLDSDGIAAPGEMVENRQVLINKQMPPATLNPINQGQPQQIDYKDVPITY-----K 813
Query: 815 GSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMP 874
G +++ V V + K I R TR P IGDKFSSRHGQKGV + DMP
Sbjct: 814 GPVESYIEKVMVSSNSEDAFLIK--ILLRQTRIPEIGDKFSSRHGQKGVTGLIVQQEDMP 871
Query: 875 FSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
F+ G+ PD+I+NPH FPSRMT+ +E +A K
Sbjct: 872 FND-RGICPDMIMNPHGFPSRMTVGKTIELLAGK 904
>gi|17647877|ref|NP_523706.1| RNA polymerase III 128kD subunit [Drosophila melanogaster]
gi|78099797|sp|P25167.2|RPC2_DROME RecName: Full=DNA-directed RNA polymerase III subunit RPC2;
Short=RNA polymerase III subunit C2; AltName:
Full=DNA-directed RNA polymerase III 128 kDa
polypeptide; Short=C128
gi|7303535|gb|AAF58590.1| RNA polymerase III 128kD subunit [Drosophila melanogaster]
gi|220943532|gb|ACL84309.1| RpIII128-PA [synthetic construct]
Length = 1137
Score = 261 bits (666), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 254/929 (27%), Positives = 404/929 (43%), Gaps = 140/929 (15%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR +Y+ + D+E Y + R G+ P+ML+ C L G +L L
Sbjct: 110 CRLRDTTYSAPITVDIE--YTRGTQRIKRNNLLIGRMPLMLRCSNCALTGKSEFELSKLN 167
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRC----VR 153
E + GGYF++ G E+V +++ +Q M+ F V++C
Sbjct: 168 ECPLDPGGYFVVRGQEKV---ILIQEQLSWNKMLTEDFNG----------VVQCQVTSST 214
Query: 154 KDQSSVTLKL-----YYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCC 208
++ S TL L YYL + S+ +P+ ++ KAL +D EI + +
Sbjct: 215 HEKKSRTLVLSKHGKYYLKHNSMTDD---------IPIVVIFKALGVVSDQEIQSLIGI- 264
Query: 209 YDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIG-----EHFQPVIDGLQ 263
D K + GA L + +L + T+ + L+++G + FQ
Sbjct: 265 -DSKSQNRFGAS------------LIDAYNLKVFTQQRALEYMGSKLVVKRFQSATTKTP 311
Query: 264 SESYYAVAETVIRDYIFVHLNDNNDKFNLLI------FMLQKLFSLVDHTSVSDNPDSLQ 317
SE + T I ++ V D FNL + M++++ + ++ D+ D
Sbjct: 312 SEEARELLLTTILAHVPV------DNFNLQMKAIYVSMMVRRVMAAELDKTLFDDRDYYG 365
Query: 318 NQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQ 377
N+ + L G L+++ ED ++ ++ + N K +K + + Q
Sbjct: 366 NKRLELAGSLLSMMF----EDLFKRMNWELKTIADKNIPKVKAAQFDVVKHMR----AAQ 417
Query: 378 IGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS 437
I +E+ + +G + +RAG T RL+++ + V+ + F R S
Sbjct: 418 ITAGLESAISSGNWTIKRFK--MERAGVTQVLSRLSYISALGMMTRVN--SQFEKTRKVS 473
Query: 438 -VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
R L P WG LCP TP+GE CGL+ ++ + + + R I+
Sbjct: 474 GPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTEVEERP---------VMIVAFN 524
Query: 497 IGVGMIPSLPKLVKSGP---PAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIP 553
GV I + V P P V V ++G V+G+ + + +V +LR ++
Sbjct: 525 AGVEDI----REVSGNPINNPNVFLVFINGNVLGLTLNHK--HLVRNLRYMRRKG----- 573
Query: 554 DDLEVG-YVPLSLGGAYPGLYLFTSPPKFVRP---VRNISLPSEESQNIEL---IGPFEQ 606
+G YV + +Y+ T + RP V N ++ EL I F+
Sbjct: 574 ---RMGSYVSVHTSYTQRCIYIHTDGGRLCRPYVIVENRRPLVKQHHLDELNRGIRKFDD 630
Query: 607 VFMEIRCPDGGDGGRRNAFPA----------THEEIHPTGMLSVVANLTPYSDHNQSPRN 656
++ ++F A TH EI P +L V A L PY HNQSPRN
Sbjct: 631 FLLDGLIEYLDVNEENDSFIAWNEDQIEDRTTHLEIEPFTLLGVCAGLVPYPHHNQSPRN 690
Query: 657 MYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAV 716
YQC M KQ MG K R D +Y+L P P+V++ T D+ P G NA VAV
Sbjct: 691 TYQCAMGKQAMGMIGYNQKNRIDSLMYNLVYPHAPMVKSKTIELTNFDKLPAGQNATVAV 750
Query: 717 LAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKV-DRGQKLFRRNKDAKSL 775
++Y+GYD+EDA+ILNK+S+DRG +Y+ + N+ DR + K +
Sbjct: 751 MSYSGYDIEDALILNKASIDRGYGRCLVYKNSKCTVKRYANQTFDRIMGPMKDALTNKVI 810
Query: 776 --HSVIDSDGLPYVGQ-------MIHPGEPYCSIYD-------KTTNSWRTNSRKGSESV 819
H V+D+DG+ G+ MI+ P + + + + S KG E
Sbjct: 811 FKHDVLDTDGIVAPGEQVQNKQIMINKEMPAVTSMNPLQGQSAQVPYTAVPISYKGPEPS 870
Query: 820 FVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVT 879
+++ V V ++ K I R TR P IGDKFSSRHGQKGV + DMPF+
Sbjct: 871 YIERVMVSANAEEDFLIK--ILLRQTRIPEIGDKFSSRHGQKGVTGLIVEQEDMPFNDF- 927
Query: 880 GMRPDLIINPHAFPSRMTIAMLLESVAAK 908
G+ PD+I+NPH FPSRMT+ LE + K
Sbjct: 928 GICPDMIMNPHGFPSRMTVGKTLELLGGK 956
>gi|242092386|ref|XP_002436683.1| hypothetical protein SORBIDRAFT_10g006995 [Sorghum bicolor]
gi|241914906|gb|EER88050.1| hypothetical protein SORBIDRAFT_10g006995 [Sorghum bicolor]
Length = 1137
Score = 261 bits (666), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 270/990 (27%), Positives = 421/990 (42%), Gaps = 160/990 (16%)
Query: 9 FEPLRELVRHHIESFDYMLDEGLSEMFDH------------------------------- 37
F +R LV+ HI+SF+Y +D+G+ ++ +
Sbjct: 26 FLKVRGLVKEHIDSFNYFIDKGIKKIVEANNRIEARNDPSIYLRYLDVRVGMPSIYENCN 85
Query: 38 --------CRQAKISYTGKLMADVEFQYLDAGSPVV--RERFNFGQFPVMLKTRRCHLQG 87
CR +Y+ + +V+ QY VV R +F G P+ML++ C L
Sbjct: 86 VESITPHLCRLTDRTYSAPI--EVDIQYTVGKQHVVKRRNKFIIGYMPIMLRSSACILNE 143
Query: 88 ADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAV 147
D +L E + GGYF++ G E+V +++ +Q ++ + K
Sbjct: 144 MDEDELAKYGECPLDPGGYFVVKGTEKV---ILIQEQLSKNRIIVDT--------DSKGR 192
Query: 148 VIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYL--LPVGIVLKALVDTNDLEIFNHL 205
VI V ++ K L++ + +LQ ++ +P+ +V+KA+ +D E +
Sbjct: 193 VIASVTSSTHAIKSKTVVLMD---KGKIYLQLNQFTKPIPIIVVMKAMGMESDQEAVQMV 249
Query: 206 TCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSE 265
D +Y SER+ TR Q LQ++ E V+ +
Sbjct: 250 G--RDPRYGDLLFPSIQECASERI------------YTRQQALQYMDEK---VMYPGATN 292
Query: 266 SYYAVAETVIRDYIFVHL--NDNN--DKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEI 321
+ + +++ D H+ D N K ML+++ + ++ D+ D + N+
Sbjct: 293 NKEGRSNSILHDVFIAHVPVKDGNLRPKCIYTAVMLRRMLDAILNSDTFDDKDYVGNKRF 352
Query: 322 LLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTS 381
L G LI++ ED + + + N K L + +M+ I
Sbjct: 353 ELSGQLISLLF----EDLFKTMNSQAVERMNKNSDKTRSSPLDFSQLIMQDT----ITFG 404
Query: 382 IETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRK 440
+E + TG + R G + RL+++ + + + F R TS R
Sbjct: 405 LERAISTGNWDIKRFR--MHRKGVSQVLSRLSYMATLGYMTRI--TPQFEKTRKTSGPRA 460
Query: 441 LLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVG 500
L P WG LCP TP+GE CGL ++ + + + G + D +GV
Sbjct: 461 LQPSQWGMLCPCDTPEGEACGLTKNLALLSHITTDQEE-GPLIDLCHS--------LGVE 511
Query: 501 MIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGY 560
+ L P + L V+L+G ++G + +++V HLR L+ S +VI + +
Sbjct: 512 DLLFLSSEEIHAPGSFL-VMLNGLILG--KHKDPQRLVIHLRNLRRS--NVIGE-----F 561
Query: 561 VPLSLGGAYPGLYLFTSPPKFVRPV----RNISLPSEESQN-----------------IE 599
V + + +++ + + RP+ IS E IE
Sbjct: 562 VSIFINEKQRCVHIASDGGRVCRPLIIADMGISRIDETHMTKLRDGTYDFDDFLSGGLIE 621
Query: 600 LIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQ 659
+ E+ I + D TH EI P +L VV+ L PY HNQSPRN YQ
Sbjct: 622 YLDVNEENNALIALYEHMDQDDVERSSITHIEIEPLSILGVVSGLIPYPHHNQSPRNTYQ 681
Query: 660 CQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAY 719
C M KQ MG FRAD LY L Q P++ T T G D+ G NA VAV+ Y
Sbjct: 682 CAMGKQAMGNIAYNQLFRADSLLYLLVYAQRPLLTTKTIELVGYDKLGAGQNATVAVMGY 741
Query: 720 TGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLF---RRNKDA---K 773
+GYD+EDA+++NKSS+DRG + T+ L D N VD +R+KD K
Sbjct: 742 SGYDIEDAIVMNKSSLDRGFGRCIALKKYTV-LKD--NYVDGVSDRIVKPQRDKDGVLMK 798
Query: 774 SLHSVIDSDGLPYVGQMIHPGEPYCS----------IYDKTTNSWRTNS---RKG--SES 818
+D DG+ GQ+I + Y + I T+S +S KG E+
Sbjct: 799 QNMRALDDDGIVAPGQIIRNHDIYVNKQTPMNTSKGIGRPLTDSCYKDSPAIYKGVDGET 858
Query: 819 VFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGV 878
VD V + + L K I RHTR P +GDKFSSRHGQKGVC + D PFS
Sbjct: 859 TVVDRVMLCSDTNDKLSIKCII--RHTRRPEVGDKFSSRHGQKGVCGTIIQQEDFPFSE- 915
Query: 879 TGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
G+ PDLI+NPH FPSRMTI ++E + K
Sbjct: 916 RGICPDLIMNPHGFPSRMTIGKMIELLGGK 945
>gi|332017159|gb|EGI57958.1| DNA-directed RNA polymerase III subunit RPC2 [Acromyrmex
echinatior]
Length = 1113
Score = 260 bits (665), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 248/920 (26%), Positives = 398/920 (43%), Gaps = 118/920 (12%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR ++Y+ ++ DVE Y+ + ++R G+ P+ML++ C L +L +
Sbjct: 80 CRLRDLNYSASIIVDVE--YIRSNQRIIRHNMVIGKMPIMLRSSNCVLTKKSESELAKMN 137
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCV----- 152
E + GGYFI+NG E+V +++ +Q MVR+ R E + +V C
Sbjct: 138 ECLYDSGGYFIINGQEKV---ILIQEQ-----MVRN--RIILEEDSKNCIVAACNSFTHD 187
Query: 153 RKDQSSVTLKL--YYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYD 210
+K +++V K YY+ + + + I+ KA+ +DLEI +
Sbjct: 188 KKTKTNVVGKTGKYYIRHNMFQDDIL---------ITIIFKAMGIVSDLEIMQMVGT--Q 236
Query: 211 EKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGE-----HFQPVIDGLQSE 265
E Y + A L + Q+L + ++ Q L+++ F + E
Sbjct: 237 ETYLNKFAAS------------LEDCQELGIFSQNQALKYLNNKRKQMRFHVPKSHVTDE 284
Query: 266 SYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPG 325
+A ++ V N L + + + + + DH S+ D+ D N+ + L G
Sbjct: 285 MKDVLATNILSHVPVVDFNFRPKALYLALMIRRVINAQSDH-SLIDDKDYYGNKRLELAG 343
Query: 326 HLITIYLKEKLEDWLRKGKKLIQDEI-ENNGKKFDFFNLANIKKVMEKNPSKQIGTSIET 384
L+ + ++ + + + KK+ I + FD N +++ + N +S
Sbjct: 344 SLLALMFEDLFKRFNWELKKIANKNIPKTKAAAFDIVN--HMRHDLITNGLVFAISSGNW 401
Query: 385 MLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLLP 443
+K R+ +R G T RL+++ + VH + F R S R L
Sbjct: 402 TIKRFRM---------ERHGVTQVLSRLSYISALGMMTRVH--SQFEKTRKVSGPRSLQG 450
Query: 444 ESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIP 503
WG LCP TP+GE CGL+ ++ + + I+ + + L G +
Sbjct: 451 SQWGMLCPNDTPEGEACGLVKNLALMAHITTEVPEELIIKLVLNLGVENIYTLAGEELTS 510
Query: 504 SLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK----VSAASVIPDDLEVG 559
+ SV ++G +VG++ + + ++V R L+ +++ I
Sbjct: 511 E----------DIYSVFVNGIMVGIVQNHK--RLVRQFRLLRRRGYINSFVSIYTQHRHK 558
Query: 560 YVPLSLGGAYPG--LYLFTSPPKFVRPV------RNISLPSEESQN--IELIGPFEQVFM 609
+ +S G L + + V+P RNI+ + + IE + E+
Sbjct: 559 CIQISSDGGRLCRPLIIVKNAKSLVKPKHIENLERNITSFEDFLYDGLIEYLDVNEENDS 618
Query: 610 EIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGF 669
I C + TH EI +L V A L PY HNQSPRN YQC M KQ MG
Sbjct: 619 LIACTESEINEN-----TTHLEIAEFTILGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGI 673
Query: 670 SVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMI 729
+ R D +Y+L PQTPIV+T D+ P G NAIVAV++Y+GYD+EDA+I
Sbjct: 674 IGYNQRNRIDTVMYNLVYPQTPIVKTRAIELINYDKLPAGENAIVAVMSYSGYDIEDALI 733
Query: 730 LNKSSVDRGMCHGQIYQTETIDLSDDGNKVD---RGQKLFRRNKDAKSLHSVIDSDGLPY 786
NK+S+DRG +Y+ L N+ G L K + H V+D DG+
Sbjct: 734 FNKASIDRGYGRCLVYRNAKCILKKYANRTQDTIMGPMLDGNTKKPITKHEVLDVDGIVL 793
Query: 787 VGQMIH------------PGEPYCSIYDKTTNSWRTNSR------KGSESVFVDYVAVDM 828
G+M+ P E + T + R KG +V+ V V
Sbjct: 794 PGEMVENKTVMVNKSVPTPSENIGPVSSGTIQTQAVEYRNAEIPFKGMVPAYVEKVIVTS 853
Query: 829 KNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIIN 888
K + R TR P IGDKFSSRHGQKGV + DMPF+ G+ PD+I+N
Sbjct: 854 NADDCFLTK--LLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQEDMPFND-HGICPDIIMN 910
Query: 889 PHAFPSRMTIAMLLESVAAK 908
PH FPSRMT+ L+E +A K
Sbjct: 911 PHGFPSRMTVGKLIELLAGK 930
>gi|312086795|ref|XP_003145218.1| RNA polymerase III 128kD subunit-PA [Loa loa]
Length = 1040
Score = 259 bits (663), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 248/923 (26%), Positives = 409/923 (44%), Gaps = 123/923 (13%)
Query: 43 ISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKEEAAE 102
++Y+ + D+E Y V+R G+ PVML++ +C L+ + +L ++E +
Sbjct: 1 MTYSAPISVDIE--YTRGSQRVLRNGLVIGKMPVMLRSSKCVLKNMNESELAHVQECPYD 58
Query: 103 MGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSSVTLK 162
GGYFI+ G E+V V++ +Q + ++ R + I +++ S T
Sbjct: 59 PGGYFIIRGSEKV---VLIQEQ-----LSKNRIMIGRNSKKELQCEILSSTQERKSKT-- 108
Query: 163 LYYLLNGSVRLGFWLQGKEYL--LPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAV 220
Y+ + R ++++ + +PV IV KA+ +D +I + + +EK+ A
Sbjct: 109 --YIASKKQR--YYVRHNQLSDDVPVAIVFKAMGFESDHDIVSAVG--LEEKFV----AA 158
Query: 221 GSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEH-----FQPVIDGLQS---ESYYAVAE 272
+P + E + T+ LQ+I F P G S + A+
Sbjct: 159 MAPSIEE--------CASHQIVTQEGALQYIASKVKMRKFGPFASGTSSTLPREHEAI-- 208
Query: 273 TVIRDYIFVHLN--DNNDKFN--LLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLI 328
+ + + H+ D N K L M+++L + D+ D N+ + L G L+
Sbjct: 209 DFLSNLMIAHVPCPDGNMKMKAIYLGLMIRRLMQAEVGDTECDDRDFYGNKRLELAGSLL 268
Query: 329 TIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKT 388
+ ++ + + + K++ + + GK LA +++ I ++ L T
Sbjct: 269 ALLFEDVFKRFNSELKRIADNSL---GK-----TLAAPLDIVKHMRQDLITNALVDALAT 320
Query: 389 GRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLLPESWG 447
G + +R G T RL+++ + ++ ++F R S R L P WG
Sbjct: 321 GNWTIKRFK--MERQGVTQVLSRLSYISVLGMMTRIN--STFEKTRKVSGPRSLQPSQWG 376
Query: 448 FLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPK 507
LCP TP+GE CGL+ ++ + + D IR L GV + SL
Sbjct: 377 MLCPSDTPEGESCGLVKNLALISHITTDSDEEPVIR---------LLYNSGVEDVKSL-H 426
Query: 508 LVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGG 567
P V L+G +VG+ + + +++V+ +R ++ L +V +S
Sbjct: 427 FSAIHSPVYHIVFLNGVIVGL--TIDPQRIVSTIRAVRRHG-------LLNEFVSVSTNA 477
Query: 568 AYPGLYLFTSPPKFVRP---VRNISLPSEESQNIELIGPFEQVFMEI------------R 612
A +Y+ + + RP V+N +P ++IE + ++F +
Sbjct: 478 AQRSVYIASDGGRLCRPYIIVKN-GVPQVTQEHIEELKKGCRIFEDFVDDGLIEYLDVNE 536
Query: 613 CPDGGDGGRRNAFP--ATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFS 670
D N TH EI P +L V A L PY HNQSPRN YQC M KQ MG
Sbjct: 537 MNDASIAVYENQIKPNTTHLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTI 596
Query: 671 VQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMIL 730
+ R D +Y L PQ P+V+T T ++ P G NA++AV++Y+GYD+EDA++L
Sbjct: 597 GYNQQKRIDSLMYLLVYPQRPLVKTKTIEFCNFEKLPAGQNAVIAVMSYSGYDIEDALVL 656
Query: 731 NKSSVDRGMCHGQIYQTETIDLSDDGNKV-DR--GQKLFRRNKDAKSLHSVIDSDGLPYV 787
NK+S+DRG +Y+ N+ DR G + + H V+D +G+ YV
Sbjct: 657 NKASLDRGYGRCLVYKHAKATARKYPNQTFDRLMGPTVEATTRKPIYKHQVLDQEGIVYV 716
Query: 788 GQMIHPGE-------PYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKA-- 838
G IH + P S T S N S V+Y V + +P A
Sbjct: 717 GACIHSKQVMINKHMPVVSTEAGATTS-SNNDGTNVSSHEVEYKDVSVVYRNPVPSYAER 775
Query: 839 -------------NIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDL 885
+ R TR P +GDKFSSRHGQKGVC + DMPF+ + GM PD+
Sbjct: 776 VLLTYNEDDAHLIKVLLRQTRRPELGDKFSSRHGQKGVCGLIAQQEDMPFNDL-GMCPDM 834
Query: 886 IINPHAFPSRMTIAMLLESVAAK 908
I+NPH +PSRMT+ L+E ++ K
Sbjct: 835 IMNPHGYPSRMTVGKLMELLSGK 857
>gi|223994131|ref|XP_002286749.1| DNA directed RNA polymerase III, second largest subunit
[Thalassiosira pseudonana CCMP1335]
gi|220978064|gb|EED96390.1| DNA directed RNA polymerase III, second largest subunit
[Thalassiosira pseudonana CCMP1335]
Length = 1108
Score = 259 bits (662), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 249/932 (26%), Positives = 410/932 (43%), Gaps = 133/932 (14%)
Query: 37 HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
CR +Y+ + +V +Y VV+++ G+ P+ML++ +C L+ ++L +
Sbjct: 64 QCRLRDCTYSAPIYVNV--RYTRGRQIVVKKKVMIGRMPIMLRSSKCLLRDKSERELAQM 121
Query: 97 KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQ 156
KE + GGYF++ G+E+V +++ +Q +S R + + A + R+ +
Sbjct: 122 KECPYDPGGYFVIKGVEKV---ILIQEQ---LSKNRVIIEEDSKTGCVSASITSSTRERK 175
Query: 157 SSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKE 216
S + ++ NG + L ++ +P+ + +KA+ +DLE
Sbjct: 176 SKAYI---FIKNGRLFLKHNTLAED--VPICVAMKAMGVESDLEFVQ------------- 217
Query: 217 KGAVGS-PLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYA---VAE 272
+VGS P V + + + L E L + T+ L++IG + S + A
Sbjct: 218 --SVGSEPEVIDALALSLEEPSKLGIVTQRHALKYIGNKMRAKRGAFGSTRKLSPEDEAR 275
Query: 273 TVIRDYIFVHLNDNNDKFN----LLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLI 328
V + + H+ N F+ + ++++L + S D+ D N+ + L G L+
Sbjct: 276 DVFANVVLSHVPVVNFDFHAKTIYIGHIVRRLVMVQLGKSSLDDKDYYGNKRLELAGSLL 335
Query: 329 TIYLKEKLEDW---LRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIET- 384
++ ++ + + L+K ++ + N + FD IK + + + + ++I +
Sbjct: 336 SLLFEDLFKHFNTDLKKQTDMVLSK-PNRAQAFDV-----IKTIRPDSIAYGMMSAISSG 389
Query: 385 --MLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKL 441
+LK R+ RAG T RL+++ + V+ + F R S R L
Sbjct: 390 NWVLKRFRM---------DRAGVTQVLSRLSYISALGMMTRVN--SQFEKTRKVSGPRSL 438
Query: 442 LPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGM 501
P WG LCP TP+GE CGL+ ++ + + +S R L GV
Sbjct: 439 QPSQWGMLCPADTPEGEACGLVKNLALLAHITTDEESEAIER---------LCRDCGVED 489
Query: 502 IPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVG-Y 560
+ L A L VLL+G +VGV + +V LR L+ ++G +
Sbjct: 490 VTLLSGHEIHSRNAFL-VLLNGLIVGV--HTRPLWLVKSLRSLRRQG--------QMGEF 538
Query: 561 VPLSLGGAYPGLYLFTSPPKFVRPV----RNISLPSEESQNIELIG-------------- 602
V L L +++ T + RP+ +LP + +IE +
Sbjct: 539 VSLYLHDGQKAVHIATDGGRVCRPLIIVDEKTALPRLKQVHIEGLALGTIHIKDLLRQGV 598
Query: 603 -PFEQVFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQ 661
+ V E C TH EI P +L VVA L P HNQSPRN YQ
Sbjct: 599 VEYVDVNEENNCLIAVTERELEWMAYTHLEIDPMTLLGVVAGLIPNPHHNQSPRNTYQSA 658
Query: 662 MAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTG 721
M KQ +G R D LY + P P+V+T T D P G NA +AV++Y+G
Sbjct: 659 MGKQAIGTVAINQYSRFDGMLYTMVYPHKPMVKTRTLDLINFDNIPAGQNACIAVMSYSG 718
Query: 722 YDMEDAMILNKSSVDRGMCHGQI----------YQTETIDLS---DDGNKVDRGQKLFRR 768
YD+EDA++LNK+SVDRG + YQ T+D + D + G++ R
Sbjct: 719 YDIEDAVVLNKASVDRGFGRCMVLKKSQASVRRYQNGTMDRTCGAPDPSAFPSGEEDKRY 778
Query: 769 NKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNS------------WRTNSRKGS 816
+ + ID DGL VG+++ G + T S + S + S
Sbjct: 779 AR-----YRGIDKDGLCMVGELMENGTVMVNKESPTDTSTPVERLAQVSYKYSGMSYRSS 833
Query: 817 ESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFS 876
+VD V + ++ K + R R P +GDKF+SRHGQKGVC + P +DMPF+
Sbjct: 834 APSYVDRVLISSNENEQFLIK--VMLRQVRRPELGDKFASRHGQKGVCGLIVPQVDMPFN 891
Query: 877 GVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
G PDLI+NPH FPSRMT+ L+E + K
Sbjct: 892 E-QGFPPDLIMNPHGFPSRMTVGKLIELLVGK 922
>gi|225464023|ref|XP_002265454.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Vitis
vinifera]
Length = 1142
Score = 259 bits (662), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 251/991 (25%), Positives = 421/991 (42%), Gaps = 157/991 (15%)
Query: 8 DFEPLRELVRHHIESFDYMLD-------------------------------------EG 30
+F +R LV+ H++SF+Y + +G
Sbjct: 27 EFLKVRGLVKQHLDSFNYFVKTDIKKIVRANDRIVSSVDPSIYLRFKDVRIGEPSITVDG 86
Query: 31 LSEMFD--HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFN-----FGQFPVMLKTRRC 83
+SE + CR + ++Y ++ ++E+ GS V + R G+ P+ML++ C
Sbjct: 87 ISEKLNPHTCRLSDMTYAAPILVNIEYI---TGSHVQKTRVEKNDVVIGRMPIMLRSCCC 143
Query: 84 HLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYT 143
L D +L L E + GGYF++ G E+V +++ +Q +S R ++G
Sbjct: 144 VLYKKDEAELARLGECPLDPGGYFVVKGTEKV---ILIQEQ---LSKNRIIIDTDKKGNI 197
Query: 144 DKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYL--LPVGIVLKALVDTNDLEI 201
+ +V S K ++ + WLQ ++ +P+ IV+KA+ +D E+
Sbjct: 198 NASVT-----SSTESTKSKTVIVME---KEKIWLQLNQFTSKIPIMIVMKAMGMESDQEV 249
Query: 202 FNHLTCCYDEKYKKEKGAVG-SPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
VG +P S + + E + T+ Q L+ + + +
Sbjct: 250 VQ---------------MVGRNPRYSALLLPSMEECASHGIYTQQQALEFLERKVKKLPF 294
Query: 261 GLQSESYYAVAETVIRDYIFVHL----NDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
S ++RD ++ N+ K + ML+++ + + D+ D +
Sbjct: 295 YNPSLEKEGRGMAILRDTFIANVPVRQNNFRPKCLYVAVMLRRMMDAILNKDAMDDKDYV 354
Query: 317 QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
N+ + L G LI++ ++ + + + KK I D I + F+ + + + ++
Sbjct: 355 GNKRLELSGQLISLLFEDLFKTMISEVKKTI-DAILAKPSRSSRFDFSQCLRFIVRD--- 410
Query: 377 QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
I +E L TG + R G + RL+++ + + F R
Sbjct: 411 SITVGLERTLSTGNWDVKRFR--MHRKGMSQVVARLSYIGSLGHMTKI--SPQFEKSRKV 466
Query: 437 S-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRV 495
S R L P WG LCP TP+GE CGL+ ++ V + + I + L +
Sbjct: 467 SGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEESPLISLCYSLGVEDLEL 526
Query: 496 LIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDD 555
L G + P ++ +G ++G ++ LR+L+ +
Sbjct: 527 LSGEEL----------HTPNSFLIIFNGLILG--KHRRPQRFANALRKLRRAG------- 567
Query: 556 LEVG-YVPLSLGGAYPGLYLFTSPPKFVRPV----RNISLPSEESQN--IELIGPFEQVF 608
++G +V + + +Y+ + + RPV + S E I+ + F+
Sbjct: 568 -KIGEFVSVFVNEKQHCVYIASDGGRVCRPVVIADKGKSRIKEHHMKELIDGVRTFDDFL 626
Query: 609 MEIRCPDGGDGGRRNAFPATHE----------EIHPTGMLSVVANLTPYSDHNQSPRNMY 658
+ NA A +E EI P +L V A L P+ HNQSPRN Y
Sbjct: 627 RDGLIEYLDVNEENNALIALYEADAKPETTHIEIEPFTILGVCAGLIPFPHHNQSPRNTY 686
Query: 659 QCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLA 718
QC M KQ MG R D LY L PQ P++ T T G D+ G NA VAV++
Sbjct: 687 QCAMGKQAMGNIAYNQLCRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMS 746
Query: 719 YTGYDMEDAMILNKSSVDRGMCHGQIYQT-ETIDLSDDGNKVDRGQKLFRRNKDAKSLHS 777
Y+GYD+EDA+++NKSS+DRG + + ++ + N DR + + DA+ +
Sbjct: 747 YSGYDIEDAIVMNKSSLDRGFGRCIVMKKFSAVNQRYENNASDRIVRPLKVGHDAERMQ- 805
Query: 778 VIDSDGLPYVGQMIHPGEPYC--------------------SIYDKTTNSWRTNSRKGSE 817
++D DGL G++I P + Y S Y + +++ E
Sbjct: 806 ILDDDGLAAPGEIIKPNDIYINKESPIITKGPLISPVGLPDSAYKPSRQTFKGPE---GE 862
Query: 818 SVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSG 877
+ VD VA+ + NL K I RHTR P +GDKFSSRHGQKGVC + D PFS
Sbjct: 863 ASVVDRVALCSDKNSNLCIKFLI--RHTRRPEVGDKFSSRHGQKGVCGTIIQQEDFPFSE 920
Query: 878 VTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
G+ PDLI+NPH FPSRMT+ ++E + K
Sbjct: 921 -RGICPDLIMNPHGFPSRMTVGKMIELLGGK 950
>gi|313237761|emb|CBY12898.1| unnamed protein product [Oikopleura dioica]
Length = 1139
Score = 259 bits (662), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 259/1001 (25%), Positives = 431/1001 (43%), Gaps = 191/1001 (19%)
Query: 9 FEPLRELVRHHIE--SFDYMLDEGLSEM----------------FDH------------- 37
F R LV+ H++ SF+Y+L +GL ++ +DH
Sbjct: 26 FLETRGLVKQHLDLDSFNYLLTQGLQKIIKANARTDVDQNFFWNYDHIYVDPPDVEYGMR 85
Query: 38 --------CRQAKISYTGKLMADVEF----QYLDAGSPVVRERFNFGQFPVMLKTRRCHL 85
CR ++Y+ + DV + Q A V+ G+ P+ML++ RC L
Sbjct: 86 SEAITPHECRLRDMTYSAPIKVDVTYVRDNQIRKARGLVI------GRMPIMLRSARCVL 139
Query: 86 QGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDK 145
++ KE + GGYF++ G E+V + M + +R DK
Sbjct: 140 ANMSQEQFFKAKECPLDPGGYFVVKGAEKV------------LLMQEQAVSNRILVEKDK 187
Query: 146 AVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVL--KALVDTNDLEIFN 203
+ V K +S L+ ++ +++ + PV +V+ KAL D EI
Sbjct: 188 TGMFCAVVKSKSDTANTQTNLIQSKNKI--YVKQNKLREPVNVVVLFKALGIERDQEI-A 244
Query: 204 HLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHF----QPVI 259
L D A+ +P L E Q L + ++ Q ++++ + P++
Sbjct: 245 ELIATEDSTL-----ALLAP--------SLFECQQLEIFSQNQAMKYLEKTIMRIQNPIV 291
Query: 260 DGLQSESYYAVA-----ETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPD 314
Q +S + V E + +++ L N + K ++ +D+ D
Sbjct: 292 SRSQMQSRFQVRTPRNREQEVHNWLVSTLLVN-------VPYCYKRRGMIK----ADDRD 340
Query: 315 SLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNP 374
N+ I L G LI++ +E +++ + ++ I ++E + + ++ M K+
Sbjct: 341 YYGNKRIQLAGDLISLLFEEHFKNFNDELRRTIGKKLEKKTAQ-----VVDVISSM-KSL 394
Query: 375 SKQIGTSIETMLKTGRLATQT-GLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASF-AG 432
+I ++E ++TG + +D R G T R++F+ I F
Sbjct: 395 QNKITLAMEAAIQTGNWNLKRFKMD---RKGITEILNRMSFISIILVGTMTRIKGHFEKT 451
Query: 433 LRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSI 492
++ T R L WG LCP TP+G CGL+ +M V ++ D + I
Sbjct: 452 MKVTGPRALQGSQWGMLCPSDTPEGAQCGLVKNMALLSHVTTFEDDK-----------PI 500
Query: 493 LRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVI--PSSEIEKVVAHLRRLKVSAAS 550
R+LI +G+ + A V L+G +VG P S + + V +RR A
Sbjct: 501 HRLLINLGVEETSTLSGYDLHGANYLVFLNGALVGATRNPKS-LTRTVQLIRR-----AG 554
Query: 551 VIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRP-------------------------- 584
+P+ +V + + + +YL + + RP
Sbjct: 555 RLPE-----FVSVYVSEEHRAVYLASDGGRLTRPCIIVENGRPKVTQKHINALLEGRVKF 609
Query: 585 ---VRN-----ISLPSEESQNIE--LIGPFEQVFMEIRCPDGG------DGGRRNAFPAT 628
V+N + + E S I+ F ++F + + + N F
Sbjct: 610 PDFVKNGLIEYLDVNEENSALIDTTFFNYFRKIFFNQNLINRWLKRAYLNFKKVNNFLNC 669
Query: 629 HEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTP 688
+EI P +L V A L PY DHNQSPRN YQC M KQ MG + R D LY+L P
Sbjct: 670 SKEIEPFALLGVCAGLIPYPDHNQSPRNTYQCAMGKQAMGTIAMNQRERIDSCLYNLVYP 729
Query: 689 QTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTE 748
Q P+V+T T G ++ P G NA VAV++Y+GYD+EDA++LNK+SVDRG +Y+ E
Sbjct: 730 QRPLVKTRTIELIGFEQLPAGQNATVAVMSYSGYDIEDALVLNKASVDRGYGRCLVYRNE 789
Query: 749 TIDLSDDGNKVDR-GQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNS 807
L G V+ +++ DAKS + + L G ++ PGE + D
Sbjct: 790 KTQLQRRGTLVETIEERIDGPALDAKSGEKIRADECLDMDG-IVAPGE---RVKD----- 840
Query: 808 WRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQL 867
R + S+ + ++ V + + + + +R TR P +GDKFSSRHGQKGV +
Sbjct: 841 -RAPTMAKSQPIHIERVMISEDATWRM---VKLSYRQTRRPELGDKFSSRHGQKGVTGLI 896
Query: 868 WPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
P +MPF+ + GM PD+I+NPH +PSRMT+ L+E + +K
Sbjct: 897 VPQENMPFNEI-GMCPDVIMNPHGYPSRMTVGKLMECIGSK 936
>gi|324502244|gb|ADY40989.1| DNA-directed RNA polymerase III subunit RPC2 [Ascaris suum]
Length = 1135
Score = 259 bits (662), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 254/1002 (25%), Positives = 427/1002 (42%), Gaps = 175/1002 (17%)
Query: 9 FEPLRELVRHHIESFDYMLDEGLSEMF--------------------------------- 35
F +R LV+ HI SFDY ++E + +
Sbjct: 24 FLQVRGLVKQHIASFDYFINEDIKNILRANERITSDVNPSFYVKYLDIRVGTPSSEEGFT 83
Query: 36 --------DHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQG 87
CR ++Y+ + D+E Y V+R G+ P+ML+ +C L+
Sbjct: 84 QLNEKISPHECRLRDMTYSAPIQVDIE--YTRGNQRVLRNGIVIGRMPIMLRCSKCVLKD 141
Query: 88 ADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAV 147
+ ++L ++E + GGYFI+ G E+V +L ++ + + ++E
Sbjct: 142 MNEEELARVQECPYDPGGYFIIRGSEKV----VLIQEQLSKNRIMIGRNSKKE------- 190
Query: 148 VIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYL--LPVGIVLKALVDTNDLEIFNHL 205
++C +S Y+++ R ++L+ + +P+ I+ KA+ +D +I + +
Sbjct: 191 -LQCEVLSSTSDRKSKTYVISKKQR--YYLKHNQLSDDIPIAIIFKAMGFESDYDIVSAV 247
Query: 206 TCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSE 265
+EK+ A +P + E + T+ LQ I + G
Sbjct: 248 G--LEEKFV----AAMAPSIEE--------CAAHQIVTQESALQFIASKVKMRKFGTGGS 293
Query: 266 SYYAVAETVIRDYI----FVHL--NDNNDKFNLLI--FMLQKLFSLVDHTSVSDNPDSLQ 317
E D++ H+ +D N K + M+++L + D+ D
Sbjct: 294 GPTPPKEHEAIDFLTSLMICHIPSHDGNMKLKAIYVGLMVRRLMQAEMGYTECDDRDFYG 353
Query: 318 NQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQ 377
N+ + L G L+ + ED ++ ++ +N+ K L +K + + +
Sbjct: 354 NKRLELAGSLMGLLF----EDVFKRFNSELKRIADNSLGKTLAAPLDIVKHMRQDLVTNA 409
Query: 378 IGTSIET---MLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLR 434
+ +I T ++K R+ +R G T RL+++ + ++ ++F R
Sbjct: 410 MVNAIATGNWIIKRFRM---------ERHGVTQVLSRLSYISVLGMMTRIN--STFEKTR 458
Query: 435 TTS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSIL 493
S R L P WG LCP TP+GE CGL+ ++ + + D + IR L
Sbjct: 459 KVSGPRSLQPSQWGMLCPSDTPEGESCGLVKNLALISHITTDSDEKPVIR---------L 509
Query: 494 RVLIGVGMIPSLP-KLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVI 552
GV + SL LV S P V L+G +VG+ + + +++V+ +R +V
Sbjct: 510 LYNSGVEDLQSLHFSLVHS--PEYHLVFLNGAIVGI--TIDPQRIVSTIR-------AVR 558
Query: 553 PDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRP--VRNISLPSEESQNIELIGPFEQVFME 610
+ L +V +S A +Y+ + + RP + P +I+ + ++F +
Sbjct: 559 RNGLLSEFVSVSTNAAQRSVYIASDGGRLCRPYIIVTDGKPRITQHDIDELKKGHRIFED 618
Query: 611 I------------RCPDGGDGGRRNAFPA--THEEIHPTGMLSVVANLTPYSDHNQSPRN 656
D N A TH EI P +L V A L PY HNQSPRN
Sbjct: 619 FVDEGLIEYLDVNEMNDASIAVYENQIKADTTHLEIEPFTLLGVCAGLIPYPHHNQSPRN 678
Query: 657 MYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAV 716
YQC M KQ MG + R D +Y L PQ P+V++ T ++ P G NAI+AV
Sbjct: 679 TYQCAMGKQAMGTIGYNQQKRIDSLMYLLVYPQRPLVKSKTIEMCNFEKLPAGQNAIIAV 738
Query: 717 LAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKV-DR--GQKLFRRNKDAK 773
++Y+GYD+EDA++LNK+S+DRG +Y+ N+ DR G + +
Sbjct: 739 MSYSGYDIEDALVLNKASLDRGYGRCLVYKHAKGTAKKYPNQTFDRLMGPTIEATTRKPI 798
Query: 774 SLHSVIDSDGLPYVGQ-------MIHPGEPYCSI--------------------YDKTTN 806
H V+D +G+ + G MI+ P S+ Y +
Sbjct: 799 YKHQVLDQEGIVFAGARIRSKQVMINKHMPIVSLEASAVAQSSGVVQAGNRNVEYKDVSI 858
Query: 807 SWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQ 866
S+R+ +E V + Y D K + R TR P +GDKFSSRHGQKGVC
Sbjct: 859 SYRSPVPSYAERVLLTYNEDDAHLIK-------VVLRQTRRPELGDKFSSRHGQKGVCGL 911
Query: 867 LWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
+ DMPF+ + GM PD+I+NPH +PSRMT+ L+E ++ K
Sbjct: 912 IAQQEDMPFNDL-GMCPDMIMNPHGYPSRMTVGKLMELLSGK 952
>gi|403334977|gb|EJY66659.1| RNA polymerase III [Oxytricha trifallax]
Length = 1146
Score = 259 bits (661), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 263/994 (26%), Positives = 424/994 (42%), Gaps = 166/994 (16%)
Query: 9 FEPLRELVRHHIESFDYMLDEGLSE----------------------------------- 33
F LR LV+ HI+S+++ L+ L E
Sbjct: 43 FLRLRGLVKAHIDSYNHFLNVDLKEIIRANQFITSDIDPAFYLKFTDIHVGMPKIEEDFE 102
Query: 34 ----MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGAD 89
M CR ++Y+ + VE +Y ++ G+ P+ML C L G
Sbjct: 103 QHNLMPHECRIRDLTYSAPIY--VEIEYTKGDRIYLKNEVLIGRMPMMLGASNCWLNGMS 160
Query: 90 SQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFR-DRREGYTDKAVV 148
++L S+KE + GYFI+ G+E+V +++ +Q MS R D ++ +
Sbjct: 161 HERLASIKECPYDPRGYFIIKGVEKV---LLIQEQ---MSKNRIIIELDSKQNVCAQVTS 214
Query: 149 IRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYL--LPVGIVLKALVDTNDLEIFNHLT 206
RK ++++ K F+L+ + +PV + KA+ D EI +
Sbjct: 215 STYERKSRTTIVHK---------NDKFYLKHNTFTDDIPVVVAFKAMGMETDQEIAQIIG 265
Query: 207 CCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSES 266
+ KY + + + L E L++ ++ Q L+ I + + Q
Sbjct: 266 T--EAKY------------LDGLALSLQEASQLNILSQAQALEFIANKVKS-LKSFQGRP 310
Query: 267 YYAVAET--VIRDYIFVHLNDNND-----KFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQ 319
+ E ++ + + H+ + K L M++++ V S D+ D N+
Sbjct: 311 KTKLEEARDILTNVVLAHIPMSAHLPYFAKCRYLGMMIRRIIEAVHDPSKLDDKDYYGNK 370
Query: 320 EILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIG 379
+ L G LI++ ++ + + KK I D + KK F L IK I
Sbjct: 371 RLELSGQLISLLFEDLFKKFQFDLKKQI-DIMLVKQKKEKFDALTCIK-------PDTIT 422
Query: 380 TSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-V 438
+E + +G + + +R T RL+++ + ++ + F R S
Sbjct: 423 QGLEMSISSGNWSLKRFK--MERKSVTQVLSRLSYIAALGMMARIN--SQFEKTRKISGP 478
Query: 439 RKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIG 498
R L P WG +CP TP+GE CGL+ ++ T V + DS +LR+ I
Sbjct: 479 RALQPSHWGIICPSDTPEGESCGLVKNLALTTHVTT--DSP---------EKPLLRICID 527
Query: 499 VGMIPSLPKLVKSGPPAVLS-----VLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIP 553
+GM G + S V L+G+ +GV+ + K V + R L+
Sbjct: 528 LGM----EDAALLGGDELYSKNHFLVFLNGQPIGVV--KQPHKFVRNFRFLRKRGRVQ-- 579
Query: 554 DDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNIS-----LPSEESQNIEL-IGPFEQV 607
+V + + + + + + VRP+ I L + Q++ L + F
Sbjct: 580 -----EFVSVYMSEQQNTINIASDAGRLVRPLIVIERGRPKLQQSQIQDLILGLRDFNDF 634
Query: 608 FMEIRCPDGGDGGRRNAFPA----------THEEIHPTGMLSVVANLTPYSDHNQSPRNM 657
E NA A TH EI P +L VA L PY HNQSPRN
Sbjct: 635 LREGLLEYLDVNEENNALIALNENALTQAHTHMEIDPLTILGCVAGLIPYPHHNQSPRNT 694
Query: 658 YQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVL 717
YQC M KQ +G R D L+ L PQ P+V+T T +E P G NA VA++
Sbjct: 695 YQCAMGKQAIGSIGLNQLNRVDTLLFLLTHPQKPLVKTKTIEIINFEELPAGQNASVAIM 754
Query: 718 AYTGYDMEDAMILNKSSVDRGMCHGQI---YQTETIDLSDDGNKV---DRGQKLFRRNKD 771
+Y+GYD+EDA++LNK+S+DRG YQT+ S+ + QK +R +
Sbjct: 755 SYSGYDIEDAVVLNKASLDRGFARAMYIRRYQTDIKKYSNGATDIILPGVSQKDQKRAFN 814
Query: 772 AKSLHSVIDSDGLPYVGQMIHPGEPYCSIY---------------DKTTNSWRTNSR--K 814
K H+ +D DG+ VG+ + G+ + + Y D TT +++ ++ K
Sbjct: 815 -KKFHA-LDEDGMARVGESLQNGDVFINKYTPVMGENQTGYLNEIDLTTLEYKSQAQSYK 872
Query: 815 GSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMP 874
G+ +VD V M ++ P + R +R P IGDKFSSRHGQKGV + P D+P
Sbjct: 873 GANPAYVDRVI--MTSTPENPFFIKMITRQSRVPEIGDKFSSRHGQKGVVGLIVPQEDLP 930
Query: 875 FSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
FS G PDLI+NPH FPSRMT+ ++E ++ K
Sbjct: 931 FSERNGWCPDLIMNPHGFPSRMTVGKMIELISGK 964
>gi|242006406|ref|XP_002424041.1| DNA-directed RNA polymerase III subunit 127.6 kDa polypeptide,
putative [Pediculus humanus corporis]
gi|212507347|gb|EEB11303.1| DNA-directed RNA polymerase III subunit 127.6 kDa polypeptide,
putative [Pediculus humanus corporis]
Length = 1137
Score = 259 bits (661), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 248/935 (26%), Positives = 427/935 (45%), Gaps = 148/935 (15%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR ++Y+ + +E Y ++++ G+ P+ML++ C L G D +L L
Sbjct: 103 CRLRDMTYSAPITVTIE--YTRGNERIIKKDLIIGRIPIMLQSANCVLYGKDEYELSKLN 160
Query: 98 EEAAEMGGYFILNGLERVF--------RSVILPK--QNYPMSMVRSSFRDRREGYTDKAV 147
E + GGYFI+ G ERV S+++ K + P + V SS +++ K
Sbjct: 161 ECPLDPGGYFIVKGQERVILIREQLLKNSLVVEKDSKGNPCAHVMSSTHEKKS----KTN 216
Query: 148 VIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYL--LPVGIVLKALVDTNDLEIFNHL 205
+I ++KD+ F+L+ + +P+ ++ K +D+E F +
Sbjct: 217 II--IKKDK------------------FYLRHNAFSDDIPLAVIYKGFGVESDIEFF--M 254
Query: 206 TCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID----G 261
+ +++Y E++ + E L++ T+ Q L++IG + G
Sbjct: 255 SVGIEQEY------------HEKLIPSMEECHKLNICTQTQALRYIGNKTKVKRSLPGSG 302
Query: 262 LQSESYYAVAETVIRDYIFVHLNDNN-----DKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
+ ++ A ++ + I H++ + +K L M++++ + D
Sbjct: 303 GKPKNVVDDAGDILANTILAHVDVLDFRCMCEKTQYLGLMVRRILQAETDPRFYTDLDHY 362
Query: 317 QNQEILLPGHLITIYLKEKLEDWLRKGK---KLIQDEIENNGKKFDFFNLANIKKVMEKN 373
N+ + L G ++ + ED+L++ K+I D++ K F + ++++ N
Sbjct: 363 GNKRLELAGAMLGLLF----EDFLKRYNLELKMIADKMIPKIKAAQFDIVKHLRQDFITN 418
Query: 374 PSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHR-GASFAG 432
++ +K R+ TQ G T + L+ L +IS F + R + F
Sbjct: 419 GFSNAISTGNWTIKRFRMHTQ---------GVT---QVLSRLSYISAFGMMTRVNSHFEK 466
Query: 433 LRTTS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTS 491
R S R L WG LCP TP+GE CGL+ ++ C +++ S I+ +++
Sbjct: 467 TRKVSGPRSLHATQWGMLCPSDTPEGEACGLVKNLALMCHISTL-SSELPIKQIAQL--- 522
Query: 492 ILRVLIGVGMIPSLP-KLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAAS 550
G+IP + + + P V L+G ++G+ + E +K+ LR+++ S
Sbjct: 523 -------CGIIPPMRMNMEQILAPDTFMVFLNGSLLGI--TYEPKKLCKKLRKIRRSG-K 572
Query: 551 VIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPV----RNISLPSEESQNIELIGPFEQ 606
+ P +V +SL + +Y+F+ + RP + L ++ N +L F++
Sbjct: 573 LNP------FVSISLHALHRTVYIFSDSGRLCRPYIIIENGVPLITKSDLN-DLERKFKK 625
Query: 607 V--FMEIRCPDGGDGGRRN-----------AFPATHEEIHPTGMLSVVANLTPYSDHNQS 653
F++ + D N TH EI P +L V A++ PY +NQS
Sbjct: 626 FIDFLDDGVIEYMDVNEENDSLIALYEKDITPKHTHLEIAPFTLLGVCASIIPYPHNNQS 685
Query: 654 PRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAI 713
PRN YQC M KQ MG + R D LY++ Q P+V T D+ P G NAI
Sbjct: 686 PRNTYQCAMGKQAMGAIGYNQENRIDTLLYNMVYTQKPMVITKPMVMVNYDKLPAGQNAI 745
Query: 714 VAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLS--DDGNKVDRGQKLFRRNKD 771
V V++Y+GYD+EDA+I+NK+S++RG Q+++ L DG DR Q +
Sbjct: 746 VCVMSYSGYDIEDALIINKASLERGYGRCQVFRNTKCVLKRYADGTS-DRIQGPLVDAET 804
Query: 772 AKSL--HSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSR---------------- 813
K L H V+D+DG+ G+ I + + +K+ S S
Sbjct: 805 RKPLWKHGVLDTDGIGAPGEKILNRQ---VLINKSVPSRSNTSNVPIFGERDYIDTPVDY 861
Query: 814 KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDM 873
KG E ++D V + + + K I+ R TR P IGDKFSSRHGQKGV + +M
Sbjct: 862 KGLEHSYIDKVLISTNSDDDSLIK--IKLRQTRIPEIGDKFSSRHGQKGVVGLIVEQENM 919
Query: 874 PFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
PF+ +G+ PD+I+NPH FPSRMT+ L+E +A K
Sbjct: 920 PFNE-SGICPDVIMNPHGFPSRMTVGKLIELLAGK 953
>gi|14601675|ref|NP_148216.1| DNA-directed RNA polymerase subunit B [Aeropyrum pernix K1]
gi|5105547|dbj|BAA80860.1| DNA-directed RNA polymerase subunit B [Aeropyrum pernix K1]
Length = 1169
Score = 259 bits (661), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 257/949 (27%), Positives = 406/949 (42%), Gaps = 131/949 (13%)
Query: 15 LVRHHIESFDYMLDEGLSEMFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQF 74
+ R IESFD + F+ CR I+Y+ LM VE + F
Sbjct: 98 MAREVIESFDRRVTP-----FE-CRVRGITYSAPLM--VEMTIVQDNMIEKTREVKIADF 149
Query: 75 PVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMV--- 131
PVM+K+ L D + ++ + E+ + GGYFI+NG E+V I+ +++ ++ +
Sbjct: 150 PVMVKSVLDPLSKYDEETVIEMGEDPGDPGGYFIINGSEKV----IVAQEDLAVNRIIVN 205
Query: 132 RSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLK 191
+S+ R +T KAV + Q+ V L S L Y +P+ ++L+
Sbjct: 206 KSTAATARITHTAKAVSTVLGLRRQAIVDRMSDGTLEAS------LSRLRYRIPLVVLLR 259
Query: 192 ALVDTNDLEIFNHLTCCYDEKYKK----EKGAVGSPLVSERVKIILAEVQDLSLTTRLQC 247
AL D+EI ++ D + + EKG +P T+
Sbjct: 260 ALGLEKDMEIMLAVSADPDVQREMLPSLEKGRALAP-------------------TKEDA 300
Query: 248 LQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHL----NDNNDKFNLLIFMLQKLFSL 303
L+++G P G + AE + + HL D K L M ++ L
Sbjct: 301 LKYLGNRIAP---GQPLDVRIRRAEEFLDTQLLPHLGNRPEDRIKKAYFLAEMANRVLQL 357
Query: 304 VDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRK-GKKLIQDEIENNGKKFDFFN 362
D+ D L N+ + L G LI +E LE +KL + E + DF
Sbjct: 358 YLGKRGEDDKDFLGNKRLRLAGDLIAELFRESLEALANTMAQKLEEQLAERRQIRLDFLV 417
Query: 363 LANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFR 422
I I ++ + TG Q R G + Q +R N++ +S R
Sbjct: 418 RPTI-----------ISDRLKGAIATGNWG-------QDRTGISQQLDRTNWISLLSHLR 459
Query: 423 AVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNI 482
V S G R L WG CP TP+G CGL+ ++ + ++ D
Sbjct: 460 RVISPLS-RGQAHFEARDLHGSHWGRYCPFETPEGINCGLVKNLALSAYISVGVDE---- 514
Query: 483 RDFSKMRTSILRVLIGVGMIPSLPKLVKSG--PPAVL----SVLLDGRVVGVIPS-SEIE 535
+ IL +GV + + + K PP ++ V ++GR +G P+ +E+
Sbjct: 515 ----SVVEEILVKDLGVAPLERILEEAKQAGEPPEIMLKGTKVFINGRPLGYHPNGAELA 570
Query: 536 KVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNIS--LPSE 593
+ + LRR S + EV L G LY+ T + +RPV + P
Sbjct: 571 RKIRELRR---SDKLEVERPWEVSVYHLR-EGEIDELYVNTDSGRLMRPVVVVENGEPKL 626
Query: 594 ESQNIELIGPFEQVF--------MEIRCPDGGDGGRRNAFPA------THEEIHPTGMLS 639
+++E + E F +E+ P+ P TH E+ ++
Sbjct: 627 TREHVEKLSRGEITFWDLVKQGVVEMLDPEEEQNALIAELPWEVTKEHTHMELWVPAIVG 686
Query: 640 VVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYT 699
V A Y +HNQSPRN YQ MAKQ +G + R D Y LQ PQ PIV+T
Sbjct: 687 VAAATIGYLEHNQSPRNTYQAAMAKQALGVYALNYRIRLDSHSYLLQYPQVPIVQTRMLD 746
Query: 700 KYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTET-IDLSDDGNK 758
G +E P G N +VA+++YTGY++EDA+I NK S+D G+ ++ T I+ G +
Sbjct: 747 IMGYNERPAGQNMVVAIMSYTGYNIEDALIFNKGSIDMGLARAYFFRVYTGIENEYPGGE 806
Query: 759 VDR-----GQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGE-------PYCSIYDKTTN 806
DR +++ + + ++ +++DG+ + GE P + +
Sbjct: 807 RDRITLPKPDEVY--DYRGAAAYAKLEADGIVAPETEVEGGEILIGRVSPPRFLGEGRVI 864
Query: 807 SWRTNSRKGS-------ESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHG 859
S T R+ + E VD V + +N + +R R+ R P IGDKF+SRHG
Sbjct: 865 SMATVRRRDTSIPMRLGEKGVVDMVVISTTVERN--KLVKVRVRNLRIPEIGDKFASRHG 922
Query: 860 QKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
QKGV ++P DMP++ G+ PD+I+NPHA PSRMT+ LLE +A K
Sbjct: 923 QKGVIGMIFPRYDMPYTE-EGIEPDVILNPHAIPSRMTVGQLLEEIAGK 970
>gi|348667429|gb|EGZ07254.1| hypothetical protein PHYSODRAFT_340380 [Phytophthora sojae]
Length = 1158
Score = 259 bits (661), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 278/1015 (27%), Positives = 417/1015 (41%), Gaps = 187/1015 (18%)
Query: 9 FEPLRELVRHHIESFDYM--------------------------------------LDE- 29
F LR LV+ HI+SFDY +DE
Sbjct: 30 FLQLRGLVKQHIDSFDYFTSVDMRNIVRAQANNVVRSDADPKFFLQYTDIQLGAPSIDEE 89
Query: 30 ---GLSEMFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQ 86
S CR +Y + V +Y V + G+ P+ML++ RC L
Sbjct: 90 AFVSASVTPHQCRLRDRTYAAPVYVSV--RYRRGNKIVTNNKVLIGRIPIMLRSSRCVLA 147
Query: 87 GADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKA 146
G L LKE + GGYFI+ G+E+V V++ +Q + ++ +G +
Sbjct: 148 GKSEAALAKLKECPYDPGGYFIVRGVEKV---VLIHEQ-----LSKNRVIIEEDGKRNVC 199
Query: 147 VVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLT 206
I ++ S T +L G V L G + +P+ IV + + +D EI +
Sbjct: 200 ASITSSTHERKSRTN--IFLNKGRVYLKSNSFGSD--IPIVIVFRGMGVESDQEIVS--- 252
Query: 207 CCYDEKYKKEKGAVGS-PLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPV--IDGL- 262
VGS P + + + E DL + T+ Q L++IG + I +
Sbjct: 253 ------------LVGSEPDICDAMSASFEEASDLKVFTQQQALEYIGSKMNTLTKIGAMG 300
Query: 263 -----------QSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQK-----LFSLVDH 306
Q + A + + + + H+ N F L + LF+ D
Sbjct: 301 GRNRGGAGRPQQDRNLVDAARSALANLVLNHVPCENFNFRLKSIYVAHIVRRILFTDKDR 360
Query: 307 TSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANI 366
T + D+ D N+ + L G L+++ L E L K D + + + F++ I
Sbjct: 361 TRL-DDKDYYGNKRLELAGQLLSL-LFEDLFKRFNSDLKRQADMVLSKPNRASVFDI--I 416
Query: 367 KKVMEKNPSKQIGTSIET---MLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRA 423
K V ++ ++ T LK R+ RAG T RL+++ +
Sbjct: 417 KCVRTDTITQGFYHALSTGNWTLKRFRM---------DRAGVTHVLSRLSYMSALGMMTR 467
Query: 424 VHRGASFAGLRTTS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNI 482
+ + F R S R L P WG LCP TP+GE CGL+ ++ C V S
Sbjct: 468 I--SSQFEKTRKVSGPRSLQPSQWGMLCPADTPEGEACGLVKNLALLCHVTS-------- 517
Query: 483 RDFSKMRTSILRVLIGVGMIP-SLPKLVKSGPPAVLSVLLDGRVVG--VIPSSEIEKVVA 539
+ I R+ +G+ SL + + V+L+G ++G V P + V
Sbjct: 518 ---DEEPGPIKRLCFDLGVTDVSLSSGEEINHASNYLVMLNGVIIGTHVNPRA----FVT 570
Query: 540 HLRRLKVSA-----ASVIPDDLEVGYVPLSLGGAYPGLYLFTSP------------PKFV 582
LRR++ + SV+ D++ S GG L P +
Sbjct: 571 RLRRIRRAGLIGEFVSVMIHDVQRVVYIASDGGRVCRPLLLIDPVTHRTRLTQRHLDELR 630
Query: 583 RPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVA 642
VR++S E +E + E+ + + G R TH EI P +L VV+
Sbjct: 631 SGVRDLSSLIVEG-CVEYVDVNEENNCLVTLHESEIGDR-----TTHLEIDPVTILGVVS 684
Query: 643 NLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYG 702
L PY HNQSPRN YQC M KQ +G R D LY + PQ P+V+T
Sbjct: 685 GLIPYPHHNQSPRNTYQCAMGKQAIGTIAMNQFERIDTLLYTMVYPQMPMVKTRVLDLVN 744
Query: 703 IDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGN-KVDR 761
D P G NAIVAV++Y+GYD+EDA++LNK+S+DRG +++ + N DR
Sbjct: 745 FDRVPAGQNAIVAVMSYSGYDIEDAIVLNKASLDRGFGRCMVFKKYQTMIKKYANGSYDR 804
Query: 762 --------------GQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKT--- 804
G + RN SL D+DG+ VG ++ G + T
Sbjct: 805 IVGPPDFDSLAAPGGAGMGFRNAKYSSL----DADGISRVGGIVQNGAIMINKEQPTQFN 860
Query: 805 -----------TNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDK 853
T S + KG +VD V + + + K I R TR P IGDK
Sbjct: 861 DSVDGRDPLDVTYSPSPTTYKGPIPAYVDKVLLTSSEANHFLVKVLI--RQTRRPEIGDK 918
Query: 854 FSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
FSSRHGQKGVC + DMPF+ G+ PDLI+NPH FPSRMT+ ++E +A K
Sbjct: 919 FSSRHGQKGVCGTIRQQEDMPFND-QGICPDLIMNPHGFPSRMTVGKMIELIAGK 972
>gi|315426560|dbj|BAJ48190.1| DNA-directed RNA polymerase subunit B [Candidatus Caldiarchaeum
subterraneum]
gi|343485294|dbj|BAJ50948.1| DNA-directed RNA polymerase subunit B [Candidatus Caldiarchaeum
subterraneum]
Length = 1117
Score = 258 bits (660), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 283/987 (28%), Positives = 421/987 (42%), Gaps = 174/987 (17%)
Query: 15 LVRHHIESFDYMLDEGLSEMFDHCRQAKISYT--------GKLMADVEFQ---------- 56
LV+HH+ SF+Y + GL ++ + +I G++ D+ +
Sbjct: 23 LVQHHLRSFNYFVKTGLQQLVNSMSDYEIKTKHGTVVVKFGQVTIDIPTKREIDAPNPQP 82
Query: 57 -----------------------YLDAGSPVVR-ERFNFGQFPVMLKTRRCHLQGADSQK 92
Y D G P+ E G PVM+K+ C L +
Sbjct: 83 LYPWEARLRNLTYEAPIYIKMSIYFD-GKPIAPPENVWVGNIPVMVKSDICPLSKMTHDE 141
Query: 93 LVSLKEEAAEMGGYFILNGLERVFRSV--ILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
L++ E+ + GGYFI+NG ERV + + P + +V D + Y+ AV++
Sbjct: 142 LLAHGEDPQDPGGYFIINGSERVIVGIEDLAPNR----IIVTKKEGDSKPQYS--AVILS 195
Query: 151 CVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYD 210
Q V +++ Y + V++ F K +P I+L+AL T D EI N +
Sbjct: 196 AAHGRQ--VRVEVSYRKDSPVKVYFSRIYKG--VPAIIMLRALGLTKDQEIANLI----- 246
Query: 211 EKYKKEKGAVGSPL--VSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYY 268
SPL V E ++ E + + T Q L +IG + G E
Sbjct: 247 -----------SPLKEVQELLEPSFREAE--GVETVEQALDYIGSR---IAFGYAEEYRL 290
Query: 269 AVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVS----DNPDSLQNQEILLP 324
AE ++ +HL L ++ V TS+ D+ D N+ + L
Sbjct: 291 EKAEQIVDTMFMLHLGTTKAARMKKAVHLCEMIGRVLETSLGLREPDDRDHYANKRLKLE 350
Query: 325 GHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIET 384
L+T + LR + ++ I P++Q SI T
Sbjct: 351 SALLTELYRMAFVKLLRDLRYQLERII----------------------PTRQ-PISIST 387
Query: 385 MLKTG------RLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSV 438
++ G + A TG R G T R N+L +S R V S G
Sbjct: 388 YVRHGIVSEFVKHAMATGNWPGGRVGVTQLLNRTNYLATLSHLRRVQSPLS-RGQPHFEA 446
Query: 439 RKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIG 498
R L WG LCP TP+G GL+ ++ + V+ F + +L L
Sbjct: 447 RDLHGTHWGRLCPCETPEGSNAGLVKNLALSAEVS-----------FQANKKELLDRLFQ 495
Query: 499 VGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEV 558
+ +IP + K PP + V +DG + G S +V LRRL+ +I ++ V
Sbjct: 496 LNVIPLNEIIAKRRPPPNVKVFVDGVLEGY--HSNGVMLVNELRRLR--REGIISQNINV 551
Query: 559 GYVPLSLGGAYPGLYLFTSPPKFVRP---VRNISLPSEESQNIELIGPFEQVFME----- 610
L G + + T + RP V+N P + Q++ELI F +
Sbjct: 552 A---LYTYGHVQEVVINTDEGRIRRPLIVVQN-GQPLLQRQHVELIKRKTSKFRDLVSLG 607
Query: 611 -IRCPDGGDGGRRNAFPA----------THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQ 659
I D + NA+ A TH EI ML V A+L PY++HNQSPRN+Y+
Sbjct: 608 IIEYLDAEE--EENAYVAISPDKVTNEHTHLEISSFAMLGVTASLIPYAEHNQSPRNVYE 665
Query: 660 CQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAY 719
MAKQ +G R D + + L PQ PIV T T GID+ P G N +VA+L
Sbjct: 666 AAMAKQALGVFASNYALRTDSRSHLLVYPQRPIVTTRTADLIGIDKRPLGQNMVVAILTG 725
Query: 720 TGYDMEDAMILNKSSVDRGM---CHGQIYQTET----------IDLSDDGNKVDRGQKLF 766
GY+MEDA++LN+SSV+RG+ +IY+ E + + + RG++ +
Sbjct: 726 KGYNMEDAVVLNRSSVERGLGLSLSWRIYEVEARQTPGGQRDKFGIPEPSVRGYRGEQFY 785
Query: 767 R-RNKDAKSLHSVIDSDGLPYVGQMIHPG--EPYCSIYDKTTNSWRTNSR--KGSESVFV 821
R +KD + S G VG M P E Y + + WR +S + SE+ V
Sbjct: 786 RVLDKDGFAHIESDVSGGTVIVGMMSPPRFLEEYQRVPTREM-VWRDSSETVQPSETGNV 844
Query: 822 DYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGM 881
+ + + + NL KA + R T IGDKFSSRHGQKGV L P DMP++ G+
Sbjct: 845 ENIFITINAEGNLLVKAKV--RSTCFTEIGDKFSSRHGQKGVVGMLIPQEDMPYTK-DGI 901
Query: 882 RPDLIINPHAFPSRMTIAMLLESVAAK 908
PDL+INPHAFPSRMTI L+ES+A K
Sbjct: 902 VPDLLINPHAFPSRMTIGQLIESLAGK 928
>gi|302676710|ref|XP_003028038.1| hypothetical protein SCHCODRAFT_83253 [Schizophyllum commune H4-8]
gi|300101726|gb|EFI93135.1| hypothetical protein SCHCODRAFT_83253 [Schizophyllum commune H4-8]
Length = 1142
Score = 258 bits (659), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 253/924 (27%), Positives = 408/924 (44%), Gaps = 125/924 (13%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR I+Y+ + V FQY G +V+ R G+ P+ML++ +C L G +L +
Sbjct: 110 CRLRDITYSAPIT--VTFQYT-RGRSIVQRRQTIGRLPIMLRSNKCVLTGRTEAQLARMT 166
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
E + GGYF++ G E+V +++ +Q ++ + D +G + C
Sbjct: 167 ECPLDPGGYFVVKGTEKV---ILVQEQLSKNRIIVET--DPVKGIVQAS----CTSSTHG 217
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYL--------LPVGIVLKALVDTNDLEIFNHLTCCY 209
V K Y + +G+ YL +P+ I LK L +D EI LT
Sbjct: 218 GVKSKAYVVTK---------KGRIYLRHNSIHEDVPIVIALKGLGIQSDKEIM-LLTAGN 267
Query: 210 DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQ----PVIDGLQSE 265
E YK A L + + + T+ Q L+ +G + P+ G +
Sbjct: 268 TEAYKIAFSAN------------LEDAAKMGVFTQQQALEWLGARVRVNRRPM--GPRRP 313
Query: 266 SYYAVAETVIRD---YIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEIL 322
+Y E + ++ + D K + M +++ + + D+ D + N+ +
Sbjct: 314 AYEEALEALATLLLAHVRMDGLDFRPKAIFVATMTRRVLMAMHDEKMVDDRDYVGNKRLE 373
Query: 323 LPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGK--KFDFFNLANIKKVMEKNPSKQIGT 380
L G L+ + ++ + + K I ++ + +FD +N + I
Sbjct: 374 LAGQLLALLFEDLFKTYCSNLKAAIDKVLKKPSRTTEFDAYNTMMFQ-------GDHITA 426
Query: 381 SIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VR 439
+ TG + + +RAG T RL+F+ + + + F R S R
Sbjct: 427 GFVRAISTGNWSLKRFR--MERAGVTHVLSRLSFISALGMMTRI--SSQFEKTRKVSGPR 482
Query: 440 KLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGV 499
L P WG LCP TP+GE CGL+ ++ + + D IR L L+GV
Sbjct: 483 ALQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDVDEEPIIR---------LAYLLGV 533
Query: 500 GMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVG 559
I G A + V ++G ++G+ + + V + R+++ A I +
Sbjct: 534 EDIALASGSEIYGTHAFI-VSVNGNIIGL--TKYPARFVTNFRKMR--RARRISE----- 583
Query: 560 YVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSE--ESQNIELI----GPFEQVFMEIRC 613
+V + + + + + T + RP+ + S++I L+ F+ F+
Sbjct: 584 FVSIYINHHHRTVQIATDGGRICRPMIIVEKGRSRVHSEHIALLKKGAATFDD-FLRKGL 642
Query: 614 PDGGDGGRRN-AFPA----------THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQM 662
+ D N A+ A TH EI P +L VA L PY HNQSPRN YQC M
Sbjct: 643 VEYLDVNEENDAYIALYEADIVPTTTHLEIEPFTLLGAVAGLIPYPHHNQSPRNTYQCAM 702
Query: 663 AKQTMGFSVQALKF----RADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLA 718
KQ +G A+ F R D LY PQ P+V+T T G D+ P G NA VAV++
Sbjct: 703 GKQAIG----AIGFNQLNRIDTLLYLSVYPQQPMVKTKTIELIGYDKLPAGQNATVAVMS 758
Query: 719 YTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKV-DR-GQKLFRRNKDAKSLH 776
Y+GYD+EDA+ILNK+S+DRG Q+ + + N DR N + +
Sbjct: 759 YSGYDIEDALILNKASLDRGYGRCQVLRKNATLVRKYPNGTYDRLADAPVDENGNIAKKY 818
Query: 777 SVIDSDGLPYVGQMIHPGEPYC---SIYDKTTNSWRTNSR----KGSESVFVDYVA---- 825
+I +DGL VG+ + PG+ Y S + T N++ + K + + VA
Sbjct: 819 DIIQADGLAGVGERVDPGDVYVNKQSPTNATDNTFNGQAAAVPYKNTPLTYKSPVAGNID 878
Query: 826 -VDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPD 884
V + +++N + R TR P +GDKFSSRHGQKGVC + DMPF+ G+ PD
Sbjct: 879 KVLISDTENDQLLVKVLIRQTRRPELGDKFSSRHGQKGVCGLIVNQEDMPFND-QGINPD 937
Query: 885 LIINPHAFPSRMTIAMLLESVAAK 908
I+NPH FPSRMT+ ++E +A K
Sbjct: 938 TIMNPHGFPSRMTVGKMIELLAGK 961
>gi|305663643|ref|YP_003859931.1| DNA-directed RNA polymerase subunit B [Ignisphaera aggregans DSM
17230]
gi|304378212|gb|ADM28051.1| DNA-directed RNA polymerase subunit B [Ignisphaera aggregans DSM
17230]
Length = 1150
Score = 258 bits (659), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 258/958 (26%), Positives = 428/958 (44%), Gaps = 161/958 (16%)
Query: 19 HIESFDYMLDEGLSEMFDHCRQAKISYTGKL-MADVEFQYLDAGSPVVRERFNFGQFPVM 77
++ D ++ ++ M CR I+Y+ + + V ++ G+PV G+ P+M
Sbjct: 93 QVKEIDGSINRNITPM--ECRHRDITYSVPIYITLVPYENDVPGNPV---EVLIGEIPLM 147
Query: 78 LKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRD 137
+K+ + L S++L+ + E+ + GGYFI++G ER+ I+ +++ + V +
Sbjct: 148 VKSSKDPLSKMTSEELIKIGEDPKDPGGYFIIDGTERI----IVAQEDLASNRVIVDYGQ 203
Query: 138 RREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGF-WLQGKEYLLPVGIVLKALVDT 196
T A VI + V + + +G++ + F + GK +P ++++AL
Sbjct: 204 EGLNITHTAKVISSTIGYRVPVIMDRHK--DGTLHVSFPAVPGK---IPFVVLMRALGLE 258
Query: 197 NDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQ 256
D +I + +D + E ++ + VQ + T L +IG
Sbjct: 259 RDFDI--AIAVSFDPVIQNE--------------LLPSFVQASDIATVEDALDYIGSR-- 300
Query: 257 PVIDGLQSESYYAVAETVIRDYIFVHLNDN-NDKFNLLIFMLQ---KLFSLVDHTSVSDN 312
+ G ES A+ V+ Y HL D+ +F+ Q KL V D+
Sbjct: 301 -IAIGQARESRIERAKYVLDKYFLPHLGSKPEDRLRKALFLGQMACKLIEFVLGYRPVDD 359
Query: 313 PDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEK 372
D N+ I L G ++ + + + +LR ++ ++E K N+A
Sbjct: 360 KDHYANKRIKLAGEMLALLFRVAFKAFLRD----LRYQLERAKIKERRLNIA-------- 407
Query: 373 NPSKQIGTSIETMLKTGRL--ATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASF 430
I + + T R+ A TG + R G + +R N++ IS R S
Sbjct: 408 -------LYIRSDVITERIKHAMATGTWIGGRTGVSQILDRTNWISSISHMRRTLSPLSR 460
Query: 431 AGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRT 490
+ + R L +G LCP TP+G CGL+ ++ ++ D
Sbjct: 461 SQPHFEA-RDLHGTQFGRLCPFETPEGPNCGLVKNLALMATISVGEDEH----------- 508
Query: 491 SILRVLIGVGMIPSLP--KLVKSGPPAV------LSVLLDGRVVGVIPSSEIEKVVAHLR 542
+ ++L G IP L + V++G + V L+G ++G P+ + ++V LR
Sbjct: 509 LVEKILYDKGTIPILVLFEKVRNGELSYEDIKTWSKVYLNGTLIGYHPNGK--ELVEKLR 566
Query: 543 RLKVSAASVIPDDLEVGYVPLSLGGAY------PGLYLFTSPPKFVRPVR-----NISLP 591
+K G + +G AY +Y+ T + +RP+ + +
Sbjct: 567 DMK-----------HRGELSYEVGIAYYRTKYINEVYVNTDSGRILRPLMVVENGKLKIT 615
Query: 592 SE----------------ESQNIELIGPFEQ--VFMEIRCPDGGDGGRRNAFPATHEEIH 633
E + IEL+ P E+ + I D G TH EI
Sbjct: 616 KEVIDKVKKGMMTFEDLVKKGYIELLDPEEEENALVAINPEDIGK-------ETTHVEIW 668
Query: 634 PTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIV 693
P M+ V A+ PY++HNQSPRN YQ MAKQ +GF + R D + + L PQ P+V
Sbjct: 669 PPAMMGVAASTIPYAEHNQSPRNAYQSAMAKQALGFYMANFILRTDTRAHILHYPQIPLV 728
Query: 694 RTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHG---QIYQTETI 750
+T + G ++ P+G N +VAV++YTGY+MEDA+I+NKSSVDRG+ ++Y TE +
Sbjct: 729 QTRALSIIGYNDRPSGQNMVVAVMSYTGYNMEDALIMNKSSVDRGLARSNFFRLYSTEEL 788
Query: 751 DLS---DDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNS 807
+ +D ++ + L R K++ ++ +D DG+ V + GE ++ KT+
Sbjct: 789 KYAGGQEDRIEIPDPKVLGYRGKES---YTKLDEDGIAKVEVQVKGGE---ALIGKTSPP 842
Query: 808 WRTNSRKG-----------------SESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPII 850
KG E +VD AV + +S + +R R R P I
Sbjct: 843 RFVEEYKGYGILAQRRKDSSVTVRHGEIGWVD--AVFITSSLEGHRLIKVRVRDLRIPEI 900
Query: 851 GDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
GDKF+SRHGQKGV L P DMP++ G+ PDLIINPHA PSRMT+ L+ES+A K
Sbjct: 901 GDKFASRHGQKGVIGALIPQYDMPYTP-DGITPDLIINPHALPSRMTLGQLMESIAGK 957
>gi|221504639|gb|EEE30312.1| DNA-directed RNA polymerase I, beta subunit, putative [Toxoplasma
gondii VEG]
Length = 1388
Score = 258 bits (659), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 132/294 (44%), Positives = 180/294 (61%), Gaps = 17/294 (5%)
Query: 631 EIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQT 690
E+ + LS+ A+LTPYS HNQSPRN+YQCQM KQTMG ++ FR D K Y L TPQ
Sbjct: 834 ELKSSAFLSIAASLTPYSHHNQSPRNIYQCQMLKQTMGTPFHSIPFRHDNKAYRLITPQR 893
Query: 691 PIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETI 750
P+VRT Y ++ D+YP+G NA+VAV+ YTG+DMEDAMILNK S++RG HG +Y+++ I
Sbjct: 894 PLVRTEDYRRFDFDDYPSGVNAVVAVMCYTGFDMEDAMILNKGSMERGAFHGCVYKSKVI 953
Query: 751 D-LSDDGNKVDRGQKLFRR-NKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKT---- 804
D Q F N+ + + +D DG P +G I G YC + +
Sbjct: 954 DAAPASARAGAASQYTFGNVNEFGRKHIATLDGDGFPAIGAKIEKGNTYCRVQTSSSSSS 1013
Query: 805 -TNSWRTNSRKGSESVFVDYVAV---------DMKNSKNLPQKANIRFRHTRNPIIGDKF 854
++ ++ K E+ +VD V + S +A++R R R P+IGDKF
Sbjct: 1014 FASNGIQHAYKDGETAYVDGVTFISPPDAAHERLAKSGLKGCRASLRLRCVRKPVIGDKF 1073
Query: 855 SSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
+SRHGQKG+ S LWP DMPF+ +G+ PD++ NPH FPSRMTI ML+ES+A K
Sbjct: 1074 ASRHGQKGILSMLWPHEDMPFT-ESGLVPDILFNPHGFPSRMTIGMLIESMAGK 1126
Score = 252 bits (643), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 197/614 (32%), Positives = 295/614 (48%), Gaps = 59/614 (9%)
Query: 37 HCRQAKISYTGKLMADVEFQYLDA-GSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVS 95
HCR+A I+Y L V F D +++ G P+M++++ C +G +L
Sbjct: 147 HCREAHITYGAPL--KVSFVRSDRRDGAALKKEVVVGMAPLMVRSKLCSTRGMSPAELQR 204
Query: 96 LKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKD 155
E+ + GGYFI+NG ERV R V+ + N+P+++ R +F +R T AV++R R D
Sbjct: 205 AGEDVDDGGGYFIINGNERVIRFVVQQRTNFPIALKRPAFANRDAFCTPYAVLLRSQRYD 264
Query: 156 QSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNH--LTCCYDEKY 213
+S + L +G L +EY ++L+ L L L C+D+
Sbjct: 265 GTSTSNILLDTEDGRCTYRILLNRQEYFCGFFLLLRCLAGNLSLAQLKAKLLEGCWDD-- 322
Query: 214 KKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQC--LQHIGEHFQPVIDGL--QSESYYA 269
A + S+ V+ + + + + L+ L +G F + L SY A
Sbjct: 323 -----AADATARSQLVEELWGQEATFADSDVLENRPLHQLGLLFWKAVHWLLRPGSSYEA 377
Query: 270 VAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
VIR ++ HL+ ++KF++ + M +KL L +++ DS QE++LPG ++
Sbjct: 378 AGTYVIRHFVLPHLSSWSEKFDMALLMYKKLRLLKQGKISAESLDSFAYQEVVLPGQILA 437
Query: 330 IYLKEKLEDWLRKGKKLIQDEI---ENNGK-------KFDFFNLANIKKVMEKNPSKQIG 379
LK+ L L K + EI +N+G FF+LA + E I
Sbjct: 438 SVLKDALFSCLAKIRLHYLQEIRMLKNSGNDPTAAIYSNKFFDLATDRCCPE------IA 491
Query: 380 TSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVR 439
+ + TG + T T LDLQQ +G+TV A+RLN RF+S FRAVHRG F ++TTSVR
Sbjct: 492 QKLSYFMATGNIRT-TQLDLQQLSGWTVTADRLNVHRFLSHFRAVHRGQFFTTMKTTSVR 550
Query: 440 KLLPESWGFLCPVHTPDGEPCGLLNHMT-STCRVASYYD--SRGNIRDFSKMRTSILRVL 496
KLL E+WGFLCPVHTPDG PCGLL H+T S VA D +R +IR F + +
Sbjct: 551 KLLGETWGFLCPVHTPDGAPCGLLLHLTQSAAPVALPPDRRARASIRLFLHKHGVCVDLE 610
Query: 497 IGVGMIPS--------LPKLVKSGPPAVLS---------VLLDGRVVGVIPSSEIEKVVA 539
G+ PS + GP V++ +++DG VV + + +
Sbjct: 611 GTSGLPPSDVGASARQAARPAVRGPTGVVAATSSASTFPLVVDGAVVCRLDRKDFAFWLE 670
Query: 540 HLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIE 599
R LK A EV P + GG +++FT P + VRPVR+I ES IE
Sbjct: 671 TFRDLKSREAEDFKQHWEVVGFPHN-GGNLESIFIFTFPGRLVRPVRHI-----ESGRIE 724
Query: 600 LIGPFEQVFMEIRC 613
IGP Q + I C
Sbjct: 725 YIGPLMQPWAAIAC 738
>gi|221481595|gb|EEE19977.1| DNA-directed RNA polymerase I, beta subunit, putative [Toxoplasma
gondii GT1]
Length = 1385
Score = 258 bits (659), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 132/294 (44%), Positives = 180/294 (61%), Gaps = 17/294 (5%)
Query: 631 EIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQT 690
E+ + LS+ A+LTPYS HNQSPRN+YQCQM KQTMG ++ FR D K Y L TPQ
Sbjct: 831 ELKSSAFLSIAASLTPYSHHNQSPRNIYQCQMLKQTMGTPFHSIPFRHDNKAYRLITPQR 890
Query: 691 PIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETI 750
P+VRT Y ++ D+YP+G NA+VAV+ YTG+DMEDAMILNK S++RG HG +Y+++ I
Sbjct: 891 PLVRTEDYRRFDFDDYPSGVNAVVAVMCYTGFDMEDAMILNKGSMERGAFHGCVYKSKVI 950
Query: 751 D-LSDDGNKVDRGQKLFRR-NKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKT---- 804
D Q F N+ + + +D DG P +G I G YC + +
Sbjct: 951 DAAPASARAGAASQYTFGNVNEFGRKHIATLDGDGFPAIGAKIEKGNTYCRVQTSSSSSS 1010
Query: 805 -TNSWRTNSRKGSESVFVDYVAV---------DMKNSKNLPQKANIRFRHTRNPIIGDKF 854
++ ++ K E+ +VD V + S +A++R R R P+IGDKF
Sbjct: 1011 FASNGIQHAYKDGETAYVDGVTFISPPDAAHERLAKSGLKGCRASLRLRCVRKPVIGDKF 1070
Query: 855 SSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
+SRHGQKG+ S LWP DMPF+ +G+ PD++ NPH FPSRMTI ML+ES+A K
Sbjct: 1071 ASRHGQKGILSMLWPHEDMPFT-ESGLVPDILFNPHGFPSRMTIGMLIESMAGK 1123
Score = 252 bits (643), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 197/614 (32%), Positives = 295/614 (48%), Gaps = 59/614 (9%)
Query: 37 HCRQAKISYTGKLMADVEFQYLDA-GSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVS 95
HCR+A I+Y L V F D +++ G P+M++++ C +G +L
Sbjct: 147 HCREAHITYGAPL--KVSFVRSDRRDGAALKKEVVVGMAPLMVRSKLCSTRGMSPAELQR 204
Query: 96 LKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKD 155
E+ + GGYFI+NG ERV R V+ + N+P+++ R +F +R T AV++R R D
Sbjct: 205 AGEDVDDGGGYFIINGNERVIRFVVQQRTNFPIALKRPAFANRDAFCTPYAVLLRSQRYD 264
Query: 156 QSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNH--LTCCYDEKY 213
+S + L +G L +EY ++L+ L L L C+D+
Sbjct: 265 GTSTSNILLDTEDGRCTYRILLNRQEYFCGFFLLLRCLAGNLSLAQLKAKLLEGCWDD-- 322
Query: 214 KKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQC--LQHIGEHFQPVIDGL--QSESYYA 269
A + S+ V+ + + + + L+ L +G F + L SY A
Sbjct: 323 -----AADATARSQLVEELWGQEATFADSDVLENRPLHQLGLLFWKAVHWLLRPGSSYEA 377
Query: 270 VAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
VIR ++ HL+ ++KF++ + M +KL L +++ DS QE++LPG ++
Sbjct: 378 AGTYVIRHFVLPHLSSWSEKFDMALLMYKKLRLLKQGKISAESLDSFAYQEVVLPGQILA 437
Query: 330 IYLKEKLEDWLRKGKKLIQDEI---ENNGK-------KFDFFNLANIKKVMEKNPSKQIG 379
LK+ L L K + EI +N+G FF+LA + E I
Sbjct: 438 SVLKDALFSCLAKIRLHYLQEIRMLKNSGNDPTAAIYSNKFFDLATDRCCPE------IA 491
Query: 380 TSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVR 439
+ + TG + T T LDLQQ +G+TV A+RLN RF+S FRAVHRG F ++TTSVR
Sbjct: 492 QKLSYFMATGNIRT-TQLDLQQLSGWTVTADRLNVHRFLSHFRAVHRGQFFTTMKTTSVR 550
Query: 440 KLLPESWGFLCPVHTPDGEPCGLLNHMT-STCRVASYYD--SRGNIRDFSKMRTSILRVL 496
KLL E+WGFLCPVHTPDG PCGLL H+T S VA D +R +IR F + +
Sbjct: 551 KLLGETWGFLCPVHTPDGAPCGLLLHLTQSAAPVALPPDRRARASIRLFLHKHGVCVDLE 610
Query: 497 IGVGMIPS--------LPKLVKSGPPAVLS---------VLLDGRVVGVIPSSEIEKVVA 539
G+ PS + GP V++ +++DG VV + + +
Sbjct: 611 GTSGLPPSDVGASARQAARPAVRGPTGVVAATSSASTFPLVVDGAVVCRLDRKDFAFWLE 670
Query: 540 HLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIE 599
R LK A EV P + GG +++FT P + VRPVR+I ES IE
Sbjct: 671 TFRDLKSREAEDFKQHWEVVGFPHN-GGNLESIFIFTFPGRLVRPVRHI-----ESGRIE 724
Query: 600 LIGPFEQVFMEIRC 613
IGP Q + I C
Sbjct: 725 YIGPLMQPWAAIAC 738
>gi|237843771|ref|XP_002371183.1| DNA-directed RNA polymerase I subunit RPA2, putative [Toxoplasma
gondii ME49]
gi|211968847|gb|EEB04043.1| DNA-directed RNA polymerase I subunit RPA2, putative [Toxoplasma
gondii ME49]
Length = 1388
Score = 258 bits (659), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 132/294 (44%), Positives = 180/294 (61%), Gaps = 17/294 (5%)
Query: 631 EIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQT 690
E+ + LS+ A+LTPYS HNQSPRN+YQCQM KQTMG ++ FR D K Y L TPQ
Sbjct: 834 ELKSSAFLSIAASLTPYSHHNQSPRNIYQCQMLKQTMGTPFHSIPFRHDNKAYRLITPQR 893
Query: 691 PIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETI 750
P+VRT Y ++ D+YP+G NA+VAV+ YTG+DMEDAMILNK S++RG HG +Y+++ I
Sbjct: 894 PLVRTEDYRRFDFDDYPSGVNAVVAVMCYTGFDMEDAMILNKGSMERGAFHGCVYKSKVI 953
Query: 751 D-LSDDGNKVDRGQKLFRR-NKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKT---- 804
D Q F N+ + + +D DG P +G I G YC + +
Sbjct: 954 DAAPASARAGAASQYTFGNVNEFGRKHIATLDGDGFPAIGAKIEKGNTYCRVQTSSSSSS 1013
Query: 805 -TNSWRTNSRKGSESVFVDYVAV---------DMKNSKNLPQKANIRFRHTRNPIIGDKF 854
++ ++ K E+ +VD V + S +A++R R R P+IGDKF
Sbjct: 1014 FASNGIQHAYKDGETAYVDGVTFISPPDAAHERLAKSGLKGCRASLRLRCVRKPVIGDKF 1073
Query: 855 SSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
+SRHGQKG+ S LWP DMPF+ +G+ PD++ NPH FPSRMTI ML+ES+A K
Sbjct: 1074 ASRHGQKGILSMLWPHEDMPFT-ESGLVPDILFNPHGFPSRMTIGMLIESMAGK 1126
Score = 251 bits (642), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 197/614 (32%), Positives = 295/614 (48%), Gaps = 59/614 (9%)
Query: 37 HCRQAKISYTGKLMADVEFQYLDA-GSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVS 95
HCR+A I+Y L V F D +++ G P+M++++ C +G +L
Sbjct: 147 HCREAHITYGAPL--KVSFVRSDRRDGAALKKEVVVGMAPLMVRSKLCSTRGMSPAELQR 204
Query: 96 LKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKD 155
E+ + GGYFI+NG ERV R V+ + N+P+++ R +F +R T AV++R R D
Sbjct: 205 AGEDVDDGGGYFIINGNERVIRFVVQQRTNFPIALKRPAFANRDAFCTPYAVLLRSQRYD 264
Query: 156 QSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNH--LTCCYDEKY 213
+S + L +G L +EY ++L+ L L L C+D+
Sbjct: 265 GTSTSNILLDTEDGRCTYRILLNRQEYFCGFFLLLRCLAGNLSLAQLKAKLLEGCWDD-- 322
Query: 214 KKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQC--LQHIGEHFQPVIDGL--QSESYYA 269
A + S+ V+ + + + + L+ L +G F + L SY A
Sbjct: 323 -----AADATARSQLVEELWGQEATFADSDVLENRPLHQLGLLFWKAVHWLLRPGSSYEA 377
Query: 270 VAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
VIR ++ HL+ ++KF++ + M +KL L +++ DS QE++LPG ++
Sbjct: 378 AGTYVIRHFVLPHLSSWSEKFDMALLMYKKLRLLKQGKISAESLDSFAYQEVVLPGQILA 437
Query: 330 IYLKEKLEDWLRKGKKLIQDEI---ENNGK-------KFDFFNLANIKKVMEKNPSKQIG 379
LK+ L L K + EI +N+G FF+LA + E I
Sbjct: 438 SVLKDALFSCLAKIRLHYLQEIRMLKNSGNDPTAAIYSNKFFDLATDRCCPE------IA 491
Query: 380 TSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVR 439
+ + TG + T T LDLQQ +G+TV A+RLN RF+S FRAVHRG F ++TTSVR
Sbjct: 492 QKLSYFMATGNIRT-TQLDLQQLSGWTVTADRLNVHRFLSHFRAVHRGQFFTTMKTTSVR 550
Query: 440 KLLPESWGFLCPVHTPDGEPCGLLNHMT-STCRVASYYD--SRGNIRDFSKMRTSILRVL 496
KLL E+WGFLCPVHTPDG PCGLL H+T S VA D +R +IR F + +
Sbjct: 551 KLLGETWGFLCPVHTPDGAPCGLLLHLTQSAAPVALPPDRRARASIRLFLHKHGVCVDLE 610
Query: 497 IGVGMIPS--------LPKLVKSGPPAVLS---------VLLDGRVVGVIPSSEIEKVVA 539
G+ PS + GP V++ +++DG VV + + +
Sbjct: 611 GTSGLPPSDVGASARQAARPAVRGPTGVVAATSSASTFPLVVDGAVVCRLDRKDFAFWLE 670
Query: 540 HLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIE 599
R LK A EV P + GG +++FT P + VRPVR+I ES IE
Sbjct: 671 TFRDLKSREAEDFKQHWEVVGFPHN-GGNLESIFIFTFPGRLVRPVRHI-----ESGRIE 724
Query: 600 LIGPFEQVFMEIRC 613
IGP Q + I C
Sbjct: 725 YIGPLMQPWAAIAC 738
>gi|224132576|ref|XP_002321356.1| predicted protein [Populus trichocarpa]
gi|222868352|gb|EEF05483.1| predicted protein [Populus trichocarpa]
Length = 1141
Score = 258 bits (659), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 250/987 (25%), Positives = 418/987 (42%), Gaps = 155/987 (15%)
Query: 8 DFEPLRELVRHHIESFDYMLDEGLSEMF-------------------------------- 35
+F R LV+ H++SF+Y ++ G+ ++
Sbjct: 26 EFLKGRGLVKQHLDSFNYFINIGIKKIVRANDRIVSTVDPSLYLRFTDVKIGKPSMVVDA 85
Query: 36 -------DHCRQAKISYTGKLMADVEFQYLDAG--SPVVRERFNFGQFPVMLKTRRCHLQ 86
CR + +Y ++ ++E+ G +++ G+ P+ML++ C L
Sbjct: 86 ISEQITPHMCRLSDTTYAAPILVNIEYISGSHGRKEKMIKNDVVIGRMPIMLRSCCCVLY 145
Query: 87 GADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKA 146
G + +L L E + GGYF++ G E+V +++ +Q +S R + ++G + +
Sbjct: 146 GKNEAELARLGECPLDPGGYFVVKGTEKV---ILIQEQ---LSKNRIIIDNDKKGNINAS 199
Query: 147 VVIRCVRKDQSSVTL----KLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIF 202
V +V L K+Y LN + +P+ +V+KA+ +D E+
Sbjct: 200 VTSSTEATKSKTVILMEKEKMYLCLNQFAKK----------IPIMVVMKAMGMESDQEVV 249
Query: 203 NHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGL 262
+ D +Y S L+ ++ E + T+ Q L+++ +
Sbjct: 250 QMVG--RDPRY--------SALLLPSIE----ECASHGVYTQQQALEYLEAMVKRSTYSS 295
Query: 263 QSESYYAVAETVIRDYIFVHL----NDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQN 318
S A ++RD ++ N+ K + ML+++ + + D+ D + N
Sbjct: 296 SSTEKENRALAILRDVFIANVPVRKNNFRPKCIYVAVMLRRMMEALLNKDAMDDKDYVGN 355
Query: 319 QEILLPGHLITIYLKEKLEDWLRKGKKLIQDEI--ENNGKKFDFFNLANIKKVMEKNPSK 376
+ + L G LI++ ++ + + + +K + +N +FDF
Sbjct: 356 KRLELSGQLISLLFEDLFKTMITEVQKTADTLLVKQNRSSRFDFSQYI---------VRD 406
Query: 377 QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
I +E L TG + R G T RL+++ + + F R
Sbjct: 407 SITNGLERALSTGNWDVKRFR--MNRKGVTQVLVRLSYMASLGHMTRI--SPQFEKSRKV 462
Query: 437 S-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRV 495
S R L P WG LCP TP+GE CGL+ ++ V + + I + L +
Sbjct: 463 SGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTTDEEESPLISLCKCLGVEDLEL 522
Query: 496 LIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDD 555
L G + P V+ +G ++G ++ +R+L+ +
Sbjct: 523 LSGEEL----------HTPNSFLVIFNGLILG--KHRRPQQFANAMRKLRRAG------- 563
Query: 556 LEVG-YVPLSLGGAYPGLYLFTSPPKFVRPV----RNISLPSEESQNIELIGP--FEQVF 608
++G +V + + +Y+ + + RP+ + +S E + G F+
Sbjct: 564 -KIGEFVSVFVNEKQRAVYIASDGGRVCRPLVIADKGVSRIKEHHMRELMDGARTFDDFL 622
Query: 609 MEIRCPDGGDGGRRNAFPATHE----------EIHPTGMLSVVANLTPYSDHNQSPRNMY 658
E NA A +E EI P +L VVA L PY HNQSPRN Y
Sbjct: 623 HEGLIEYLDVNEENNALIALYEWEATPETTHIEIEPFTILGVVAGLIPYPHHNQSPRNTY 682
Query: 659 QCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLA 718
QC M KQ MG R D LY L PQ P++ T T G D+ G NA VAV++
Sbjct: 683 QCAMGKQAMGNIAYNQASRMDSLLYLLVYPQRPLLTTRTIELVGYDKLGAGQNATVAVMS 742
Query: 719 YTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSV 778
Y+GYD+EDA+++NK+S+DRG G+ + ++ + ++ R K+ + V
Sbjct: 743 YSGYDIEDAIVMNKASLDRGF--GRCIVLKKYTCTNQKYENGASDRILRPRKNEER-ERV 799
Query: 779 IDSDGLPYVGQMIHPGE-------------PYCSIYDKTTNSWRTNSR--KGS--ESVFV 821
+D DGL G++I G+ P S +R ++ KG+ ES V
Sbjct: 800 LDDDGLAAPGEIIRHGDIYINKESPIETRGPLKSAAALADVKYRPCAQIFKGTEGESCVV 859
Query: 822 DYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGM 881
D VA+ + NL K I RHTR P +GDKFSSRHGQKGVC + D PFS G+
Sbjct: 860 DRVALCSDKNNNLCIKYKI--RHTRRPEVGDKFSSRHGQKGVCGTIIQQEDFPFSE-RGI 916
Query: 882 RPDLIINPHAFPSRMTIAMLLESVAAK 908
PDLI+NPH FPSRMT+ ++E + K
Sbjct: 917 CPDLIMNPHGFPSRMTVGKMIELLGGK 943
>gi|68076215|ref|XP_680027.1| DNA-directed RNA polymerase, beta subunit [Plasmodium berghei strain
ANKA]
gi|56500894|emb|CAH97643.1| DNA-directed RNA polymerase, beta subunit, putative [Plasmodium
berghei]
Length = 1451
Score = 258 bits (658), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 138/287 (48%), Positives = 176/287 (61%), Gaps = 15/287 (5%)
Query: 631 EIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQT 690
E+ T LS +A+LTP+SDHNQSPRN+YQCQM KQTMG + + K+Y + TPQ
Sbjct: 913 ELKQTSFLSFLASLTPFSDHNQSPRNIYQCQMLKQTMGIQSLNMFYTFTNKIYRIITPQF 972
Query: 691 PIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETI 750
P+V T Y YG+D +P+GTNA+VA+LAYTGYDMEDA+I+NK+S DRGM IY+TE I
Sbjct: 973 PLVVTRDYEFYGVDNFPSGTNAVVAILAYTGYDMEDALIINKASSDRGMFRTHIYKTEVI 1032
Query: 751 DLSDDGNKVD---------RGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIY 801
DL N D L +N + ++ DGLP + Q I P S
Sbjct: 1033 DLYKKTNSPDFVLGNNIRYNANSLSSKNNIREHKGKFLNKDGLPCINQKILENNPLYSYI 1092
Query: 802 DKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQK 861
+K K +VD V+ NS+N Q A IR R TR P++GDKF+SRHGQK
Sbjct: 1093 NKKNELTTYEIFKTHGDYYVDCVS----NSQN-NQIAIIRLRTTRPPLVGDKFASRHGQK 1147
Query: 862 GVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
GV S+L+P DMPFS +G+ PD+I NPH PSRMTI ML+ES+ K
Sbjct: 1148 GVISRLFPHEDMPFSE-SGIVPDVIFNPHGIPSRMTIGMLIESICGK 1193
Score = 119 bits (298), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 71/234 (30%), Positives = 120/234 (51%), Gaps = 17/234 (7%)
Query: 381 SIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRK 440
SI + KTG +A+ + QQ++G+ + A+ +N LR ++ FR++HRG+ F ++ S RK
Sbjct: 549 SISYLFKTGNIASDY-IHYQQKSGWVILADEINNLRLLTNFRSIHRGSFFQDVKVLSPRK 607
Query: 441 LLPESWGFLCPVHTPDGEPCGLLNHMTSTC---RVASYYDSRGNIRDFSKMRTSILRVLI 497
LL ESWGF+CPVHTPDG PCGLLNH++ C VAS + NI KM + + I
Sbjct: 608 LLGESWGFICPVHTPDGSPCGLLNHLSQYCCIYNVASNESHKFNI----KMYLKKIGINI 663
Query: 498 GVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLE 557
+ + + ++ + +++D + I +E ++ V L+ K + E
Sbjct: 664 NLDETSGIHTIYEN---QTIPIIVDSVPITYISETEFKRTVYKLKYAKNHNLYNLKSHFE 720
Query: 558 VGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEI 611
+ L+ + + T + +RP+ N+ + IE I P Q ++ I
Sbjct: 721 I-LAYLNEQSMMDSIIINTCTGRIIRPILNLKMKC-----IEFISPGYQPYVSI 768
Score = 65.1 bits (157), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 79/347 (22%), Positives = 149/347 (42%), Gaps = 48/347 (13%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
C+ A +Y G+++ + QY + +VR + G P+M+ + C+L+ + ++LV
Sbjct: 142 CKLACSTYEGEVLMVINKQY---KNEIVRTTVSTGFIPIMVLSDLCNLKNLNKKELVQKG 198
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
E+ + +GG+FI++G ++ R VI PK N S++ + + V I C+ D S
Sbjct: 199 EDESLLGGFFIISGHLKIIRYVICPKYN---SILLNE---------ENKVHINCLLSDNS 246
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
L YL N QG +P +++ L Y K K
Sbjct: 247 VFINSLAYLKNYEYEFLSRFQGSFIHIPFNVLILCLSPIKKKSYI----------YNKIK 296
Query: 218 GAVGSPLVSERVKIILAEVQDLSLTTRLQ--------CLQHIGEH--FQPVIDGLQSESY 267
+ + +K I + + L + L++IG++ I +
Sbjct: 297 LGIKN---ENAIKYIENYINSIFLKNNINEKEIFEKYNLKYIGKYANVSRTIFRYYEGNN 353
Query: 268 YAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKL----FSLVDHTSVSDNPDSLQNQEILL 323
+ ++VI + HL N++KF + M ++L F L+ T+V N DSL+ +
Sbjct: 354 HKKGKSVINYCVLPHLQTNSEKFETICLMFKQLVLSKFKLI--TTV--NKDSLEYHSVTT 409
Query: 324 PGHLITIYLKEKLEDWLRKGKKLIQDEIENN-GKKFDFFNLANIKKV 369
L++ LKE++ + + L + KK++ F L N+K++
Sbjct: 410 CSSLLSNILKERILSCFYRMQMLYSRSLHKFLEKKYEVFKL-NVKQI 455
>gi|66356606|ref|XP_625481.1| DNA-directed RNA polymerase beta subunit [Cryptosporidium parvum Iowa
II]
gi|46226475|gb|EAK87469.1| DNA-directed RNA polymerase beta subunit [Cryptosporidium parvum Iowa
II]
Length = 1287
Score = 257 bits (657), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 265/988 (26%), Positives = 413/988 (41%), Gaps = 185/988 (18%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR I+Y + DV+ Y+ + V ++ G+ PVML+++ C L G + ++V L
Sbjct: 187 CRMRDITYAAPIFVDVD--YVRGNTVVRKKNVEIGRIPVMLRSKVCILHGKTAAEMVKLN 244
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
E + GGYF++ G E+ IL ++ + + D + Y K ++
Sbjct: 245 ECPHDPGGYFVVKGTEKA----ILMQEQLSKNRIIVEL-DNKHNYCATVTSTTAESKSRT 299
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
V K NG + L E +P+ IVLKA+ + EIF + +E + +E
Sbjct: 300 LVVFK-----NGKLYLRHNSFSDE--IPLCIVLKAMGIETEQEIFFMIG---NEPHHQE- 348
Query: 218 GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGE------------------------ 253
G + S L EV + T+ Q L + +
Sbjct: 349 GIINS----------LQEVHQEGIFTQRQALLFMSKKAKSKFKSTFGSSRGFDKSNAEES 398
Query: 254 -------HFQPVIDGLQSESYYAVAET---VIRDYIFVHLNDNNDKFNLLIFMLQKLFSL 303
F L S V ET V+ +I D + K L M +++
Sbjct: 399 AENSGFTEFGGSKSSLCGTSIDDVLETLNRVLLSHIGTIYTDLHPKALFLCLMAKRVLDA 458
Query: 304 VDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNL 363
+ S+ D+ D N+ I L G LI+I ED ++ L + +I+ ++ F
Sbjct: 459 SEDNSLLDDKDYYGNKRIELAGQLISILF----EDLFKRFSVLTKKQIDQTLIRY--FQT 512
Query: 364 ANIKKV--------------MEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQA 409
+ K P+ I ++T L TG + + +R+G T
Sbjct: 513 RDASKAGTGRDDSNSTYPDCFRNLPTDIITRGMQTALSTGNWSIKRFR--MERSGMTQVL 570
Query: 410 ERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTS 468
R +++ + V + F R S R L P WG LCP TP+GE CGL+ ++
Sbjct: 571 TRFSYIASLGIMTRVD--SQFEKARKVSGPRALQPSQWGILCPCDTPEGESCGLVKNLAL 628
Query: 469 TCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKL-----------------VKS 511
T + + D + L +GV I S L S
Sbjct: 629 TTHITT---------DHCPQYLTSLLFTLGVQDISSCSYLDFNTKQSEKLSNEDLKNESS 679
Query: 512 GPPAVLS---VLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVG-YVPLSLGG 567
G V V ++G ++GV E+ + + LR L+ +G +V +
Sbjct: 680 GKNNVKKHYYVSINGSLLGVHRKPEL--LASQLRNLRRKGF--------IGQFVSIFCNH 729
Query: 568 AYPGLYLFTSPPKFVRP--VRNISLPSEESQNIELIGPFEQVFMEIRCP---DGGDGGRR 622
+ + + T + RP + + +P + ++IE + E +F + + D
Sbjct: 730 IHSSVQIATDGGRLCRPLIIVDQGVPRLKEEHIEQLKRGEIIFSDFISQGILEWIDVNEE 789
Query: 623 NAF-----------PATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSV 671
N TH EI P +L VV+ L PY +HNQSPRN YQC M KQ MG SV
Sbjct: 790 NNLLIALRDENLTNETTHLEIDPLSILGVVSGLIPYPNHNQSPRNTYQCAMGKQVMG-SV 848
Query: 672 QALKF-RADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMIL 730
+F R D LY L PQ P+ +T T ++ P G N+ VAV+++ GYD+EDA+++
Sbjct: 849 GFNQFLRCDSVLYLLVYPQKPLCKTRTIEMINFEQLPAGQNSSVAVMSFAGYDIEDAIVM 908
Query: 731 NKSSVDRGMCHGQIYQTETIDLSDDGNKV-------------DRGQKLFRRNKDAKSLHS 777
NK+SVDRG + + +TI+L N + + G + F D S
Sbjct: 909 NKASVDRGFARCFVMKRQTIELQKLPNGLSERVVRPISVGSGNTGNRRFSFKND-----S 963
Query: 778 VIDSDGLPYVGQMI-----------------HPGEPYCSIYDKTTNSWRTNSRKGSESVF 820
++D+DG+ VG + + G+P S +D + KG S +
Sbjct: 964 ILDNDGVCNVGVQVSEDDIIVNKMSPINTREYVGDP--SQFDLSEYKPSPVKYKGPTSSY 1021
Query: 821 VDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTG 880
+D V + N Q + R TR P +GDKFSSRHGQKGV + D+PFS TG
Sbjct: 1022 IDRVILTENADGN--QIYKVITRQTRRPELGDKFSSRHGQKGVVGLIISQEDLPFSE-TG 1078
Query: 881 MRPDLIINPHAFPSRMTIAMLLESVAAK 908
PDLI+NPH FPSRMT+ LLE +++K
Sbjct: 1079 WCPDLIMNPHGFPSRMTVGKLLELISSK 1106
>gi|312370727|gb|EFR19060.1| hypothetical protein AND_23137 [Anopheles darlingi]
Length = 501
Score = 257 bits (657), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 142/329 (43%), Positives = 188/329 (57%), Gaps = 36/329 (10%)
Query: 582 VRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFP--ATHEEIHPTGMLS 639
+RPV+N+ + ELIG FEQV+++I +P TH E+ T LS
Sbjct: 1 MRPVKNLL-----ANRTELIGTFEQVYLDICITP------EETYPELTTHMELSKTAFLS 49
Query: 640 VVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYT 699
+A L P D NQSPRNMYQCQM KQTMG + K Y LQTP TP+ R Y
Sbjct: 50 NLAQLIPMPDCNQSPRNMYQCQMGKQTMGTPCHNWAMQCTSKFYRLQTPATPLFRPVHYD 109
Query: 700 KYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKV 759
+D Y GTNAIVAV++YTGYDMEDAMI+NKS+ +RG G +Y+ E L
Sbjct: 110 NIDLDNYAMGTNAIVAVISYTGYDMEDAMIINKSAYERGFAAGTVYKNEFFAL------- 162
Query: 760 DRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESV 819
G F RN ++L + +D+DGLP G ++ +P S +D + +
Sbjct: 163 -LGNSFFARNPKDETLTAFLDNDGLPCQGSVLSTNDPLYSYFDTNDHLY----------- 210
Query: 820 FVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVT 879
+V V K ++ I +R RNP +GDKF+SR GQKG+CSQ WP ID+PF+ +
Sbjct: 211 ---HVQVQDKQLSENGKQLIITYRVPRNPSVGDKFASRAGQKGICSQKWPAIDLPFT-ES 266
Query: 880 GMRPDLIINPHAFPSRMTIAMLLESVAAK 908
GM PD+I NPH FPSRMTIAM++E++A K
Sbjct: 267 GMIPDIIFNPHGFPSRMTIAMMIETMAGK 295
>gi|82594366|ref|XP_725394.1| DNA-directed RNA polymerase subunit beta [Plasmodium yoelii yoelii
17XNL]
gi|23480386|gb|EAA16959.1| DNA-directed RNA polymerase, beta subunit [Plasmodium yoelii yoelii]
Length = 1470
Score = 257 bits (657), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 137/287 (47%), Positives = 176/287 (61%), Gaps = 14/287 (4%)
Query: 631 EIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQT 690
E+ T LS +A+LTP+SDHNQSPRN+YQCQM KQTMG + + K+Y + TPQ
Sbjct: 931 ELKQTSFLSFLASLTPFSDHNQSPRNIYQCQMLKQTMGIQSLNMFYTFTNKIYRIITPQF 990
Query: 691 PIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETI 750
P+V T Y YG+D +P+GTNA+VA+LAYTGYDMEDA+I+NK+S DRGM IY+TE I
Sbjct: 991 PLVVTRDYEFYGVDNFPSGTNAVVAILAYTGYDMEDALIINKASSDRGMFRTHIYKTEVI 1050
Query: 751 DLSDDGNKVDRG---------QKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIY 801
DL N D L +N + ++ DGLP + Q I P S
Sbjct: 1051 DLYKKTNSPDFALGNNVRYTINSLPTKNNPREYKGRFLNKDGLPCINQKILENNPLYSYI 1110
Query: 802 DKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQK 861
+K K +VD V+ NS++ Q A IR R TR P++GDKF+SRHGQK
Sbjct: 1111 NKKNELTTYEVFKTHGDYYVDCVS----NSQSNNQVAIIRLRTTRPPLVGDKFASRHGQK 1166
Query: 862 GVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
GV S+L+P DMPFS +G+ PD+I NPH PSRMTI ML+ES+ K
Sbjct: 1167 GVVSRLFPHEDMPFSE-SGIVPDVIFNPHGIPSRMTIGMLIESICGK 1212
Score = 116 bits (291), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 72/239 (30%), Positives = 122/239 (51%), Gaps = 27/239 (11%)
Query: 381 SIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRK 440
+I + KTG +++ + QQ++G+ + A+ +N LR ++ FRA+HRG+ F ++ S RK
Sbjct: 572 AISYLFKTGNISSDY-IHYQQKSGWVILADEINNLRLLTNFRAIHRGSFFQDVKVLSPRK 630
Query: 441 LLPESWGFLCPVHTPDGEPCGLLNHMTSTC---RVASYYDSRGNIRDFSKMRTSILRVLI 497
LL ESWGF+CPVHTPDG PCGLLNH++ C VAS + NI+ + K ++ I
Sbjct: 631 LLGESWGFICPVHTPDGSPCGLLNHLSQYCCIHNVASNEPHKFNIKMYLK------KIGI 684
Query: 498 GVGMIPSLPKLVKSGPPAV-----LSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVI 552
V + + SG V + +++D + I ++ ++ V L+ K +
Sbjct: 685 NVNLDET------SGIHTVYENQTIPIIVDSVPITYISENDFKRTVYKLKYAKNHNLYNL 738
Query: 553 PDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEI 611
E+ L+ + + T + +RP+ N+ + IE I P Q ++ I
Sbjct: 739 KSHFEI-IAHLNEQSLMDSITIHTCTGRIIRPILNLKMKC-----IEFISPGYQPYVSI 791
Score = 59.3 bits (142), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 71/312 (22%), Positives = 127/312 (40%), Gaps = 44/312 (14%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
C+ A +Y G+++ + QY + +VR + G P+M+ + C+L+ + ++LV
Sbjct: 166 CKLACSTYEGEVLVVINKQY---KNEIVRTTVSTGFIPIMVLSDLCNLKNLNKKELVQKG 222
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
E+ + +GG+FI++G ++ R VI PK N + + V I C+ D S
Sbjct: 223 EDESILGGFFIVSGHLKIIRYVICPKYNAILLN------------EENKVHINCLLSDNS 270
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKAL---------VDTNDLEIFNHLTCC 208
L YL N QG + +++ L + L I N
Sbjct: 271 VFINSLSYLNNYEYEYLSRFQGSFIRIAFNVLILCLSPIKKKSYIYNKIKLGIKNENAIK 330
Query: 209 YDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYY 268
Y E Y + S + + EV D L + DG + Y
Sbjct: 331 YIENY------INSIFLKNDIN--EKEVFDKYNLKYLGKYANTSRTIFRYYDG----NNY 378
Query: 269 AVAETVIRDYIFVHLNDNNDKFNLLIFMLQKL----FSLVDHTSVSDNPDSLQNQEILLP 324
+ V++ + HL N++KF + M ++L F L++ + N DSL+ +
Sbjct: 379 KKGKNVVKYCVLPHLQSNSEKFETICLMFKQLVLSKFKLIN----TVNKDSLEYHSVTTC 434
Query: 325 GHLITIYLKEKL 336
L++ LKE++
Sbjct: 435 SGLLSNILKERI 446
>gi|399216789|emb|CCF73476.1| unnamed protein product [Babesia microti strain RI]
Length = 1146
Score = 257 bits (657), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 250/931 (26%), Positives = 425/931 (45%), Gaps = 108/931 (11%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRER-FNFGQFPVMLKTRRCHLQGADSQKLVSL 96
CR ++Y+ + DVE+ GS ++R++ G+ PVMLK+ C L+G D +L L
Sbjct: 80 CRIRDLTYSAPIYVDVEYT---RGSDIIRKQNAEIGRLPVMLKSAICSLEGKDELELQKL 136
Query: 97 KEEAAEMGGYFILNGLERVFRSVILPKQNY-----PMSMVRSSFRDRREGYTDKAVVIR- 150
E + GGYFI+ G E+V + IL Y S + +F ++ Y +VI+
Sbjct: 137 GECPHDPGGYFIIKGSEKV--TFILWTNIYYFFKLMFSKLIQTFINKSYRYYGFVIVIQE 194
Query: 151 CVRKDQSSVTLKLYYLLNGSV---------RLGFWLQG-KEYL--------LPVGIVLKA 192
+ K++ V + + + ++ R L+ K YL LP+ I+ A
Sbjct: 195 QLSKNRILVERDVKHNICATLTSATAESKSRASVVLKSEKIYLRHNSFTDDLPISIIFMA 254
Query: 193 LVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIG 252
+ + EI + + Y + SPL++ ++ I + L + +R++
Sbjct: 255 MGIESTQEIAEIIGAGHS--YPRSVYLSLSPLIANDIRTIKDAL--LFIGSRIRSRIMAR 310
Query: 253 EHFQPVIDGLQSESYYAVAET--VIRDYIFVHL-------NDNNDKFNLLIFMLQKLFSL 303
F PV + + + E ++ I H+ D ++K L M++++ +
Sbjct: 311 GFFAPVKEKVAKSDTVIIKEAYDILDRVILPHVPMKKSKSRDYSEKITCLALMVRRVLNC 370
Query: 304 VDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNL 363
+ D+ D N+ + L G L++I ++ + ++ + KK ++ +E + +
Sbjct: 371 AYKDAPLDDKDHYGNKRLELAGQLVSILFEDLYKKFIFQVKKQVEQSLERYIQSRSSGSD 430
Query: 364 ANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRA 423
P I +++ L TG + +R+G T RLN++ I
Sbjct: 431 TTYPDTFRNLPHDIITRGMQSSLSTGNWNIKRFK--MERSGVTQILSRLNYMATIGMMMR 488
Query: 424 VHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIR 483
++ G + + R L P WGF+CP TP+GE CGL+ ++ V + + +
Sbjct: 489 INSQFE-KGRKVSGPRALSPSQWGFICPCDTPEGESCGLVKNLALATHVTNDENPQ---- 543
Query: 484 DFSKMRTSILRVLIGVGMIPSLPKLVKSGP---PAVLSVLLDGRVVGVIPSSEIEKVVAH 540
+ R+L +G+ PS K V + P V L+G +VGV ++E+ ++ +
Sbjct: 544 -------YLERLLYSLGLFPS--KYVATRDLFDPRNWLVFLNGLLVGVHSNAEL--LMDN 592
Query: 541 LRRLKVSA-----ASVIPDDLEVGYVPLSLGG--AYPGLYLFTSPPKFVRPVRNISLPSE 593
+R+L+ + S+ DD V Y+ S GG P + + + K + + + +
Sbjct: 593 IRKLRRAGKIGEFVSIYCDDSSV-YIS-SDGGRVCRPLIIVESGKSKLTNEILDQVIAGK 650
Query: 594 ESQN-------IELIGPFEQVFM-------EIRCPDGGDGGRRNAFPATHEEIHPTGMLS 639
N +E I E+ + EI C TH E+ P +L
Sbjct: 651 LKLNQLLKGGILEWIDVNEENNLLIATKPNEITCK------------TTHLELDPFTILG 698
Query: 640 VVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKF-RADQKLYHLQTPQTPIVRTNTY 698
+++ L PY HNQSPRN YQC M KQ +G SV +F R D L+ L PQ P+V T T
Sbjct: 699 IISGLIPYPHHNQSPRNTYQCGMGKQAIG-SVGYNQFSRCDTILHTLVYPQKPLVTTRTV 757
Query: 699 TKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNK 758
++ P G NAIVAV++Y GY++EDA+++NK+SV+RG G+ + + +
Sbjct: 758 KLTAFEKLPAGQNAIVAVMSYGGYEIEDAIVINKASVERGF--GRCISMKRMSVELKKYH 815
Query: 759 VDRGQKLFRRNKDAKSL-HSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSE 817
N+ A ++ + I+SDG+ VG + + I K T + K +
Sbjct: 816 TGSSDIAAPTNQLASNINYQGIESDGIVRVGHELSNDQ---IIVSKITQGQKITPVKYKQ 872
Query: 818 SVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSG 877
+ V + ++ + + + R R+P +GDKFSSRHGQKGV + D+PFS
Sbjct: 873 NTSSHLDRVIVTDTTSGCRVYKMMLRKFRSPELGDKFSSRHGQKGVVGLIANQEDLPFSS 932
Query: 878 VTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
G PDLI+NPH FPSRMT+ LLE VA+K
Sbjct: 933 -NGWVPDLIMNPHGFPSRMTVGKLLELVASK 962
>gi|157870530|ref|XP_001683815.1| putative RNA polymerase I second largest subunit [Leishmania major
strain Friedlin]
gi|68126882|emb|CAJ04831.1| putative RNA polymerase I second largest subunit [Leishmania major
strain Friedlin]
Length = 1616
Score = 257 bits (657), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 179/564 (31%), Positives = 284/564 (50%), Gaps = 66/564 (11%)
Query: 401 QRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPC 460
Q +G+ V AE LNF RF R VHRG + A +R++ VRK E++GF+C V +PDGE C
Sbjct: 852 QTSGWVVMAEHLNFYRFFEQLRCVHRGKTIADMRSSEVRKYPCEAYGFICMVQSPDGEDC 911
Query: 461 GLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVL 520
G+LNH++ V++ + + +++R + + + GV +L +V V V
Sbjct: 912 GVLNHLS----VSTISSNSPDAAMTAQLREIVRKAVPGVRSRATLSTVVDQLCETV-PVW 966
Query: 521 LDGRVVGVIPSSEIEKVVAHLR-------RLKVSAASVIP-------DDLEVGYV-PLSL 565
++G ++G + ++ + A LR R +V ++ LEV YV P S
Sbjct: 967 MEGELLGYLSPADAVEAAATLRERKALTLRSQVHVTGIVRRKDASPLHTLEVVYVAPKSK 1026
Query: 566 GGAYPGLYLFTSPPKFVRPVRNISLPSEESQN-----IELIGPFEQVFMEIRC--PDGGD 618
A GLY+F + +RPV+ + + + IG +EQ +++I D D
Sbjct: 1027 DPA--GLYVFYDCGRLMRPVQRLESSVRKDATHLPFPLVFIGTWEQSWLDIAAVPSDPLD 1084
Query: 619 GGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRA 678
+ + E + T ++S+ + P+ +HN SPRN++QC ++KQ+ G +QAL +R
Sbjct: 1085 AVVQLNRKYEYMEQNGTNLISLTSATIPFFEHNCSPRNLFQCGLSKQSSGTQLQALAWRK 1144
Query: 679 DQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRG 738
+ KL+ PQ I RT YG+D+ G NA++A+LAYTGYDM+DA+I+N ++ RG
Sbjct: 1145 EAKLFRTYCPQRYISRTLPMDYYGLDDVNLGVNAVIAILAYTGYDMDDAVIINSTAAQRG 1204
Query: 739 MCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLP------------Y 786
M + + + S G+ D + + ++++GLP +
Sbjct: 1205 MLTAGVTVAKIVTASGKGSDKDDVFVFHNLLSTGERFTAELEANGLPPKRANASLDAFSF 1264
Query: 787 VGQMIHPG-----EPYC--------------SIYDKT---TNSWRTNSRKGSESVFVDYV 824
+PG + YC ++Y+ T WR + KG E +V V
Sbjct: 1265 DRDHKYPGLRDNNDVYCCAKRVERVDPFTNKAVYEYTRHHATKWR-HFDKG-EDAWVQQV 1322
Query: 825 AVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPD 884
+ + S P + FR R P +GDKFSSRHGQKG D+PF+ +G+ PD
Sbjct: 1323 -IPLVYSGPDPTSVLMIFRIPRPPTVGDKFSSRHGQKGTLPLHIRSHDLPFATASGITPD 1381
Query: 885 LIINPHAFPSRMTIAMLLESVAAK 908
+IINPHAFPSRMT+ M+LE + AK
Sbjct: 1382 VIINPHAFPSRMTVGMVLEIMTAK 1405
Score = 81.6 bits (200), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 89/172 (51%), Gaps = 14/172 (8%)
Query: 26 MLDEGLSEMFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRERF--NFGQFPVMLKTRRC 83
ML +E F RQ ++ A V++ D P +E+F NF FP M+K RC
Sbjct: 431 MLRTLSTEYFALMRQLRV-------APVDYDTYDYLVPS-KEQFWVNFASFPEMVKGARC 482
Query: 84 HLQGADSQKLVSLK--EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREG 141
L+ D+ +L + EE E+GGYFI+NG ER+ R++++ + N P+++ R F +
Sbjct: 483 ALRNVDA-RLDHFRALEEQKEVGGYFIMNGGERILRALLMQRCNVPINIYREKFVTQGPH 541
Query: 142 YTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKAL 193
++ KAVVIRC R + YY G V F + + LP ++L A+
Sbjct: 542 FSAKAVVIRCKRPSGLTAQNYFYYTTQGEVIFSF-ARKVVWHLPAPLLLNAM 592
>gi|195431078|ref|XP_002063575.1| GK21338 [Drosophila willistoni]
gi|194159660|gb|EDW74561.1| GK21338 [Drosophila willistoni]
Length = 999
Score = 256 bits (655), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 249/903 (27%), Positives = 390/903 (43%), Gaps = 152/903 (16%)
Query: 71 FGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSM 130
G+ P+ML++ C L G +L L E + GGYF++ G E+V +++ +Q M
Sbjct: 3 IGRMPLMLRSSNCVLSGKTEFELSKLNECPLDPGGYFVVRGQEKV---ILIQEQLSWNKM 59
Query: 131 VRSSFRDRREGYTDKAVVIRC----VRKDQSSVTLKL-----YYLLNGSVRLGFWLQGKE 181
+ F V++C ++ S TL L YYL + S+
Sbjct: 60 LTEDFNG----------VVQCQVTSSTHEKKSRTLVLSKHGRYYLKHNSMTDD------- 102
Query: 182 YLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSL 241
+P+ ++ KAL +D EI +H+ P R L E +L +
Sbjct: 103 --IPIVVIFKALGIVSDQEIMSHIGV--------------DPQSQNRFGASLLEAFNLKI 146
Query: 242 TTRLQCLQHIGEHFQPVIDGLQSESYYA---VAETVIRDYIFVHLNDNNDKFNL----LI 294
T+ + L ++G V+ QS + A ++ I H+ +N F + +
Sbjct: 147 FTQQRALDYMGSKL--VVKRFQSATTKTPPEEARDLLMTTILAHVPVDNFNFQMKAIYVA 204
Query: 295 FMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKE--KLEDWLRKGKKLIQDEIE 352
M++++ + ++ D+ D N+ + L G LI++ ++ K +W K+I D+
Sbjct: 205 LMVRRVMAAELDKTLFDDRDYYGNKRLELAGSLISLMFEDLFKRMNW---ELKMIADKNI 261
Query: 353 NNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERL 412
K F V++ + QI +E+ + +G + +R G T RL
Sbjct: 262 PKVKAAQF-------DVVKHMRAAQITAGLESAISSGNWTIKRFK--MERGGVTQVLSRL 312
Query: 413 NFLRFISFFRAVHRGASFAGLRTTS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCR 471
+++ + V+ + F R S R L P WG LCP TP+GE CGL+ ++
Sbjct: 313 SYISALGMMTRVN--SQFEKSRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTH 370
Query: 472 VASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGP---PAVLSVLLDGRVVGV 528
+ + D IL GV I + V P P V V ++G V+G+
Sbjct: 371 ITTEVDEHP---------VMILAYNAGVEDI----REVSGNPINNPHVFLVFINGNVLGL 417
Query: 529 -IPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRP--- 584
+ + K + ++RR K S +V + + +++ T + RP
Sbjct: 418 TLNHKHLVKNMRYMRR-KGRIGS---------FVSIHTSYSQRCVFVHTDGGRLCRPYII 467
Query: 585 VRNISLPSEESQNIEL---IGPFEQVFMEIRCPDGGDGGRRNAFPA----------THEE 631
V ++ EL I F+ ++ ++F A TH E
Sbjct: 468 VEKCRPLVKQHHLDELQRGIRKFDDFLLDGLIEYLDVNEENDSFIACYEENINPTTTHLE 527
Query: 632 IHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTP 691
I P +L V A L PY HNQSPRN YQC M KQ MG K R D +Y+L PQ P
Sbjct: 528 IEPFTLLGVCAGLVPYPHHNQSPRNTYQCAMGKQAMGMIGYNQKNRIDSLMYNLVYPQAP 587
Query: 692 IVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETID 751
+V++ T D+ P G NA VAV++Y+GYD+EDA+ILNK+S+DRG +Y+
Sbjct: 588 MVKSKTIELTNFDKVPAGQNATVAVMSYSGYDIEDALILNKASIDRGYGRCLVYKNSKCT 647
Query: 752 LSDDGNKV-DRGQKLFRRNKDAKSL--HSVIDSDGLPYVGQMIH---------------- 792
+ N+ DR + K + H V+D+DG+ G+ +
Sbjct: 648 VKRYANQTFDRIMGPVKDALTNKVIFKHDVLDTDGIVSPGEQVQNKQIMINKEMPAVTSI 707
Query: 793 -------PGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHT 845
P PY ++ S KGSE +V+ V V ++ K I R T
Sbjct: 708 NPLEGQSPQVPYTAV---------PISYKGSEPSYVERVMVSANAEEDFLIK--ILLRQT 756
Query: 846 RNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESV 905
R P IGDKFSSRHGQKGV + DMPF+ G+ PD+I+NPH FPSRMT+ LE +
Sbjct: 757 RIPEIGDKFSSRHGQKGVTGLIVDQEDMPFNDF-GICPDMIMNPHGFPSRMTVGKTLELL 815
Query: 906 AAK 908
K
Sbjct: 816 GGK 818
>gi|401423257|ref|XP_003876115.1| RNA polymerase I second largest subunit,putative [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322492356|emb|CBZ27630.1| RNA polymerase I second largest subunit,putative [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 1615
Score = 256 bits (655), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 179/564 (31%), Positives = 283/564 (50%), Gaps = 66/564 (11%)
Query: 401 QRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPC 460
Q +G+ V AE LNF RF R VHRG + A +R++ VRK E++GF+C V +PDGE C
Sbjct: 851 QTSGWVVMAEHLNFYRFFEQLRCVHRGKTIADMRSSEVRKYPCEAYGFICMVQSPDGEDC 910
Query: 461 GLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVL 520
G+LNH++ + ++ D+ +++R + + + GV + +V V V
Sbjct: 911 GVLNHLSLSTISSNSPDAAMT----AQLREIVRKAVPGVRSRATHSTVVDQLCETV-PVW 965
Query: 521 LDGRVVGVIPSSEIEKVVAHLRRLK-------VSAASVIP-------DDLEVGYV-PLSL 565
++G ++G + ++ + LR+LK V ++ LEV YV P +
Sbjct: 966 MEGELLGYLSPADAAEAATTLRQLKALTLRSQVHVTGIVRRKDASPLQTLEVVYVAPKNK 1025
Query: 566 GGAYPGLYLFTSPPKFVRPVRNISLPSEESQN-----IELIGPFEQVFMEIRC--PDGGD 618
A GLY+F + +RPV+ + + + IG +EQ +++I D D
Sbjct: 1026 DPA--GLYVFYDCGRLMRPVQRLESSVRKDATHLPFPLMFIGTWEQSWLDIAAVPSDPLD 1083
Query: 619 GGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRA 678
+ + E + T ++S+ + P+ +HN SPRN++QC ++KQ+ G +QAL +R
Sbjct: 1084 AVMQLNRKYEYMEQNGTNLISLTSATIPFFEHNCSPRNLFQCGLSKQSSGTQLQALAWRK 1143
Query: 679 DQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRG 738
+ KL+ PQ I RT YG+D+ G NA++AVLAYTGYDM+DA+I+N ++ RG
Sbjct: 1144 EAKLFRTYCPQRYISRTLPMDYYGLDDVNLGVNAVIAVLAYTGYDMDDAVIINSTAAQRG 1203
Query: 739 MCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLP------------Y 786
M + + + S G+ D + + ++++GLP +
Sbjct: 1204 MLTAGVTVAKIVTASGKGSDKDDVFVFHNLLSTGERFTAELEANGLPPKRANASLDAFSF 1263
Query: 787 VGQMIHPG-----EPYC--------------SIYDKT---TNSWRTNSRKGSESVFVDYV 824
+PG + YC S+Y+ T WR + KG E +V V
Sbjct: 1264 DRDHKYPGLRDNNDVYCCAKRVERVDPFTNKSVYEYTRHHATKWR-HFDKG-EDAWVQQV 1321
Query: 825 AVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPD 884
+ + S P + FR R P +GDKFSSRHGQKG D+PF+ +G+ PD
Sbjct: 1322 -IPLVYSGPDPTSVLMIFRIPRPPTVGDKFSSRHGQKGTLPLHIRSHDLPFATASGITPD 1380
Query: 885 LIINPHAFPSRMTIAMLLESVAAK 908
+IINPHAFPSRMT+ M+LE + AK
Sbjct: 1381 VIINPHAFPSRMTVGMVLEIMTAK 1404
Score = 80.5 bits (197), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 74/132 (56%), Gaps = 6/132 (4%)
Query: 66 RERF--NFGQFPVMLKTRRCHLQGADSQKLVSLK--EEAAEMGGYFILNGLERVFRSVIL 121
+E+F NF FP M+K RC L+ D+ +L + EE E+GGYFI+NG ER+ R++++
Sbjct: 463 KEQFWVNFASFPEMVKGARCALRNVDA-RLDHFRALEEQKEVGGYFIMNGGERILRALLM 521
Query: 122 PKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKE 181
+ N P+++ R F + ++ KAVVIRC R + YY G V F +
Sbjct: 522 QRCNVPINIYREKFVTQGPHFSAKAVVIRCKRPSGLTAQNYFYYTTQGEVIFSF-ARKVV 580
Query: 182 YLLPVGIVLKAL 193
+ LP ++L A+
Sbjct: 581 WHLPAPLLLSAM 592
>gi|307182559|gb|EFN69752.1| DNA-directed RNA polymerase II subunit RPB2 [Camponotus floridanus]
Length = 1178
Score = 256 bits (653), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 253/932 (27%), Positives = 403/932 (43%), Gaps = 108/932 (11%)
Query: 34 MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVR---ERFNFGQFPVMLKTRRCHLQGADS 90
M + R ++Y+ L D+ + G V ++ G+ P+ML+++ C L G
Sbjct: 112 MPNEARLRNLTYSAPLYVDITKTIVKDGEDPVETQHQKTFIGKIPIMLRSKYCLLAGLSD 171
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
+ L L E + GGYFI+NG E+V +I ++ ++ S +D + Y KA +
Sbjct: 172 RDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFSMKDGKYAY--KAEIRS 226
Query: 151 CVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
C+ + + TL + + + G+ + +P+ +V +AL D +
Sbjct: 227 CLEHSSRPTSTLWINMMAKSGASIKKSAIGQRIIAIIPYIKQEIPIMVVFRALGFVADRD 286
Query: 201 IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
I H+ +D+ P + E VK L E + + L IG +
Sbjct: 287 ILEHIIYDFDD-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGT--RGAKP 331
Query: 261 GLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
G+ E A +++ + H+ ++ K L +M+ +L S D+ D
Sbjct: 332 GVTKEKRIKYAREILQKEMLPHVGISDFCETKKAYFLGYMVHRLLSASLGRRELDDRDHY 391
Query: 317 QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
N+ + L G L+ + ++ L K +L + + GK F+ LA IK +K
Sbjct: 392 GNKRLDLAGPLLAFLFRGLFKN-LMKEVRLYAQKFIDRGKDFNL-ELA-IK-------TK 441
Query: 377 QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
I + L TG Q Q RAG + RL F +S R V+ G +
Sbjct: 442 IITDGLRYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRVNSPIGRDG-KLA 499
Query: 437 SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
R+L WG LCP TP+G GL+ ++ ++ + IL L
Sbjct: 500 KPRQLHNTLWGMLCPAETPEGAAVGLVKNLALMAYIS-----------VGSQPSPILEFL 548
Query: 497 IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAAS 550
M +L ++ S + ++G VG+ + ++++A LR+L+ VS S
Sbjct: 549 EEWSM-ENLEEIAPSAIADATKIFVNGCWVGI--HRDPDQLMATLRKLRRQMDIIVSEVS 605
Query: 551 VIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN----IELIGPF-- 604
+I D + + G L + R+I + E N EL+G
Sbjct: 606 MIRDIRDREIRIYTDAGRISRPLLIVEGQNLLLKKRHIDMLKERDYNNDGWQELVGSGVV 665
Query: 605 -------EQVFMEIRCPDGGDGGRRNAFPAT--HEEIHPTGMLSVVANLTPYSDHNQSPR 655
E+ M PD + A+ T H EIHP +L V A++ P+ DHNQSPR
Sbjct: 666 EYIDTLEEETVMIAMSPDDLKQDKEYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPR 725
Query: 656 NMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVA 715
N YQ M KQ MG + R D + L P P+V T + E P G N+IVA
Sbjct: 726 NTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVA 785
Query: 716 VLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT----ETIDLSDDGNKVDRGQKLFRRNKD 771
+L YTGY+ ED++ILN S+V+RG Y++ E+ + D + ++ +L +
Sbjct: 786 ILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKEAESKKIGDQEEQFEKPSRLTCQGM- 844
Query: 772 AKSLHSVIDSDGL-----------PYVGQMIHPGEPYCSIYDKTTNSWRTNSR----KGS 816
+++ +D DG+ +G+ I E + D TT + + S
Sbjct: 845 RNAIYDKLDDDGIIAPGIRVSGDDVIIGKTITLPETDDEL-DSTTKRFTKRDASTFLRNS 903
Query: 817 ESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFS 876
E+ VD V + + NS+ + IR R R P IGDKF+SRHGQKG C + DMPFS
Sbjct: 904 ETGIVDQVMLTL-NSEGY-KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFS 961
Query: 877 GVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
G+ PD+IINPHA PSRMTI L+E + K
Sbjct: 962 -CEGLTPDIIINPHAIPSRMTIGHLIECIQGK 992
>gi|428184687|gb|EKX53541.1| hypothetical protein GUITHDRAFT_64211 [Guillardia theta CCMP2712]
Length = 1155
Score = 255 bits (651), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 252/930 (27%), Positives = 413/930 (44%), Gaps = 116/930 (12%)
Query: 27 LDEGLSEMFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFN-----FGQFPVMLKTR 81
++EG++ CR ++Y +++ D+E+ AG +ER G+ P+ML+
Sbjct: 111 VNEGITP--QQCRLRDMTYYAQILVDIEYTRDQAGGGGKKERVRKDNHPIGRMPIMLRCS 168
Query: 82 RCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREG 141
C L G ++ ++ E + GGYF++ G E+V +++ +Q +S R +G
Sbjct: 169 HCVLNGKSETEMSAMGECPLDPGGYFVVRGTEKV---ILIQEQ---LSKNRIIIERDAKG 222
Query: 142 YTDKAVVIRCVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL--LPVGIVLKALVDTND 198
+V + K ++++T+K NG F L+ + +P+ I LKA+ T+D
Sbjct: 223 QPSASVTSSTAKTKTKTNITIK-----NGR----FQLKHNSFTDSIPIVIALKAMGLTSD 273
Query: 199 LEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPV 258
EI VGS + + A ++ + R Q L +IG +P
Sbjct: 274 QEIIQ---------------LVGSEALF--ADDLAASLEVCATEIRPQALDYIGNKIKPT 316
Query: 259 IDGLQSESYYAVAE-----TVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNP 313
+ +S A TV+ ++ V D K + ML+++ + +V D+
Sbjct: 317 KFARRQQSTKAEEAREKLATVVVSHVPVVKYDFRAKAIYICLMLRRIIQAMHDETVMDDK 376
Query: 314 DSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKN 373
D N+ + L G +++ ++ + + +K+ Q ++E + F V++
Sbjct: 377 DYYGNKRLELAGQTMSLLFEDVFKSFNSDVQKIAQKQLEKPSRTTTF-------DVLKYL 429
Query: 374 PSKQIGTSIETMLKTGRLATQT-GLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAG 432
P +I +++ + TG + G+ +R G T RL+++ + V + F
Sbjct: 430 PPTKITSALVNAISTGNWNLRRFGM---ERQGVTQVLSRLSYIAALGMITRVQ--SQFEK 484
Query: 433 LRTTS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTS 491
R S R L P WG LCP TP+GE CGL+ +++ V + D ++
Sbjct: 485 TRKVSGPRALQPSQWGMLCPADTPEGESCGLVKNLSLMTHVTT---------DDDELPIE 535
Query: 492 ILRVLIGVGMIPSLPKLVKSGPPAVLS----VLLDGRVVGV--IPSSEIEKVVAHLRRLK 545
+L +GV + L SG A L V L+G ++G+ P + ++ + A RR +
Sbjct: 536 LLCYDLGVEDLGIL-----SGEEATLGNVYLVFLNGLLLGLHRAPKNFVQLLRAMRRRGR 590
Query: 546 VSAASVIPDDLEVGYVPLSLGGAY---PGLYL-----FTSPPKFVRPVRNISLPSE--ES 595
+ I + V +S G P + + F + + N S+ +
Sbjct: 591 LGEFVSIYSNARQRTVHISCDGGRVCRPLIIVKNGRSFVTDQHIKEVLSNCRTFSDFLKE 650
Query: 596 QNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPR 655
IE + E+ I + G G + TH EI P ++ A L P HNQSPR
Sbjct: 651 GLIEYLDVNEENDSLIALYEHGIGPK-----TTHLEIDPLTVMGACAGLIPNPHHNQSPR 705
Query: 656 NMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVA 715
N YQC M KQ +G R D LY L PQ P+ +T T P G NA VA
Sbjct: 706 NTYQCAMGKQAIGAIAYNQLQRIDTLLYLLVYPQRPLAQTKTIEFINFHRIPAGQNATVA 765
Query: 716 VLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKV-DRGQKLFRRNKDAKS 774
V++YTGYD+EDA++LN+S+VDRG + + T L N DR + +
Sbjct: 766 VMSYTGYDIEDAVVLNRSAVDRGFGRTIVLKKSTTSLKRYSNAAEDRITYPQSGGNERLA 825
Query: 775 LHSV-IDSDGLPYVGQMIHPGEPYC--------SIYDKTTNSWRTNSRKGSESV------ 819
L + +D DG+ VG + G+ S + R ++ K + V
Sbjct: 826 LRTANLDRDGIVGVGSKVSQGQILVNKMVPKDISTVINNPDELREDAFKSAPLVYKDKAD 885
Query: 820 -FVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGV 878
+VD V + + ++ K + R TR P +GDKFSSRHGQKGV + P DMPF+
Sbjct: 886 GYVDQVLLTSNHDEHFLVK--VLMRTTRRPELGDKFSSRHGQKGVTGIIIPQEDMPFTE- 942
Query: 879 TGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
G+ PDLI+NPH FPSRMT+ LLE + K
Sbjct: 943 EGLCPDLIMNPHGFPSRMTVGKLLEMLGGK 972
>gi|193599220|ref|XP_001950634.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2
[Acyrthosiphon pisum]
Length = 1112
Score = 255 bits (651), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 241/936 (25%), Positives = 401/936 (42%), Gaps = 155/936 (16%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR ++Y + D+E Y+ +G +R+ F G+ P+ML++ RC L +L +K
Sbjct: 84 CRLRDLTYCAPIYVDIE--YVKSGMKYLRKGFIIGRLPIMLRSNRCCLYQKSDAELAKMK 141
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
E + GGYFI+ G E+V P +N + +D T + + +K ++
Sbjct: 142 ECIYDSGGYFIVKGTEKVILMQEQPAKNKILVE-----KDSNGVPTVQVMSSTVDKKSKT 196
Query: 158 SVTLK--LYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKK 215
++ K L Y+ + ++ E +P I +KAL +D I
Sbjct: 197 NIIFKKNLIYVCHNAL---------EENIPFVIFMKALGVCSDQLILQ------------ 235
Query: 216 EKGAVGSPL-VSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETV 274
VG+ + ++ E L++ T+ Q L+ IG+ + + G SE Y + T
Sbjct: 236 ---MVGTEFAIMNQMYPCFLEGSKLNIYTQKQALRFIGDRIKKM--GFSSEDYDSRVITE 290
Query: 275 IRDY----IFVHLNDNNDKFNL----LIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGH 326
+ D+ I H+ N +++ M+++L + + + D+ D N+ + LPG
Sbjct: 291 VHDFLSTVILAHIPVTNTNYHMKAIYTSIMVRRLIFSLSNPDLFDSKDYYGNKCLDLPGS 350
Query: 327 LITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIE--- 383
+++ + K+F F +K V +KN K T +
Sbjct: 351 FLSLLFDDTF-------------------KRFTF----ELKSVADKNIPKVKATPFDIIK 387
Query: 384 -----TMLKTGRLATQTG-----LDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGL 433
T+ A QTG +R G T RL++L I V+ + F
Sbjct: 388 YIRTDTITNALVFAIQTGNWSIKRFRMERHGVTQVLTRLSYLSAIGMMTRVN--SQFEKS 445
Query: 434 RTTS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSI 492
R S R L P +G LCP TP+GE CGL+ +++ V + S+ ++
Sbjct: 446 RKVSGPRSLQPSQFGMLCPSDTPEGEACGLIKNISLLAHVTTE----------SEDDDAV 495
Query: 493 LRVLIGVGMIP-SLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASV 551
L++ + +G+ P L + + ++ +G ++G +++ V RR +
Sbjct: 496 LQLALNLGVEPVGLYSVDDLHEDYMYLIIFNGNIIG--STNKCIDFVDKFRRCRRKG--- 550
Query: 552 IPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRP----------VRNISLPSEESQNIELI 601
+ ++ + + + +Y+ + + RP + N + +
Sbjct: 551 ----IFSKFISIYISERHKCIYINSGDGRLCRPYLVVENGQPLLTNAHIDDLKRGYCTFQ 606
Query: 602 GPFEQVFMEIRCPDGGDG-----GRRNAFP-ATHEEIHPTGMLSVVANLTPYSDHNQSPR 655
+Q +E D + P TH E+ P +L + A++ P+ HNQSPR
Sbjct: 607 DFIDQSLIEFIDVDEENNCLIAYNEEKIVPETTHMEMAPFSILGICASVIPFPHHNQSPR 666
Query: 656 NMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVA 715
N YQC M KQ +G + R D Y+L P+V + D+ P G NA +A
Sbjct: 667 NTYQCAMGKQAIGTIALNYQHRIDTLQYNLWYTHIPMVHSKAVPMINYDKLPAGQNATIA 726
Query: 716 VLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNK-VDRGQKLFRRNKDAKS 774
V++Y+GYD+EDA+ILNK+SVDRG G ++ L N+ +D Q N K
Sbjct: 727 VMSYSGYDIEDAIILNKASVDRGFGRGGTFRNSKCFLRHYPNQMMDSIQGPIIDNATKKP 786
Query: 775 L--HSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSR------------------- 813
+ H +++DG+ +GQ ++DK + +
Sbjct: 787 IYKHRALENDGIAAIGQ---------PVFDKQVTINKATPKTITVEDVGGDRGFKETPLY 837
Query: 814 -KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDID 872
KG + +VD V + NS K N FR R P IGDKFSSRHGQKGV + D
Sbjct: 838 YKGYDPSYVDKVMI-TSNSDCFLIKEN--FRQPRRPEIGDKFSSRHGQKGVVGLIVDQED 894
Query: 873 MPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
MPF+ V G+ PDLI+NPH FPSRMT+ L+E +A K
Sbjct: 895 MPFNEV-GICPDLIMNPHGFPSRMTVGKLIELLAGK 929
>gi|332157775|ref|YP_004423054.1| DNA-directed RNA polymerase subunit B [Pyrococcus sp. NA2]
gi|331033238|gb|AEC51050.1| DNA-directed RNA polymerase subunit B [Pyrococcus sp. NA2]
Length = 1117
Score = 254 bits (650), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 259/998 (25%), Positives = 427/998 (42%), Gaps = 199/998 (19%)
Query: 15 LVRHHIESFDYMLDEGLSEMFDHCRQAK-------ISYTGKLMADVEFQ----------- 56
LVR H++S++ ++ GL E+ D K + + + + EFQ
Sbjct: 27 LVRQHLDSYNAFIERGLQEVVDEVGGIKPDIPDFEVKFGKIRVGEPEFQEPHGQRKPLYP 86
Query: 57 --------------YLDAGSPVVRE------RFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
YL+ PV+R G+ P+MLK++ C L G ++L+ L
Sbjct: 87 MDARIRNLTYSAPLYLEM-IPVIRGVEQDPVEVRIGELPIMLKSKVCRLYGLSDEELIKL 145
Query: 97 KEEAAEMGGYFILNGLERVFRSV--ILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRK 154
E+ + GGYFI+NG ERV S+ I P + ++V +R+E Y K R +
Sbjct: 146 GEDPKDPGGYFIINGSERVIVSIEDIAPNR----TLVEKD--ERQERYIAKVFSYRHGYR 199
Query: 155 DQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGI-----------VLKALVDTNDLEIFN 203
+V K K+ +L VGI V++AL D +I +
Sbjct: 200 ALVTVERK-----------------KDGILYVGIPNVPRPVKFVYVMRALGLERDKDIVD 242
Query: 204 HLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLS-LTTRLQCLQHIGEHFQPVIDGL 262
AVG+ E +I+ ++D S +TT+ + L++IG+ P G
Sbjct: 243 ---------------AVGND--PEVQQILFDNLEDASDITTQQEALEYIGKLVAP---GQ 282
Query: 263 QSESYYAVAETVIRDYIFVHLNDNND----KFNLLIFMLQKLFSLVDHTSVSDNPDSLQN 318
E AE VI + + H+ N + K L M K+ L D+ D N
Sbjct: 283 AREYRLKRAEYVIDNNLLPHMGVNPEDRIRKAYYLGMMALKVIELSLGKRGEDDKDHYAN 342
Query: 319 QEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQI 378
+ + L G L+ + ++ + + + G+K+ F N+ I
Sbjct: 343 KRLRLAGDLLKDLFRVAFNQLVKDIQYQMTKTYQRRGEKYVFGNIHRF-----------I 391
Query: 379 GTSIETMLKTGRL--ATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
SI + T R+ A TG R G + +R N++ +S R V
Sbjct: 392 RNSIRPDVLTERIEHALATGAWPGGRTGVSQLLDRTNYVSTMSHLRRVTSPLDREQPHFE 451
Query: 437 SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
+ R L WG +CP TP+G CGL+ ++ ++ + +R++ L
Sbjct: 452 A-RDLHGTHWGRICPTETPEGPNCGLVKNLALMAQITTAVPEE-EVREY----------L 499
Query: 497 IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSE--IEKVVAHLRRLKVSAASVIP- 553
+ +G++P V+ P + V L+G ++G + + +EK+ + R K+S +
Sbjct: 500 MSLGIVPI---EVRRPSPELWRVYLNGVLIGTVEDGKALVEKIRSDRRSGKISDIINVAY 556
Query: 554 -DDLEVGYVPLSLGGA-YPGLYLFTSPPKFVRP-VRNISLPSEESQNIELIGPFEQVFME 610
+D++ YV G P + + PK + V+ I + ++ +G E + E
Sbjct: 557 YEDVKEVYVNSDDGRVRRPLIIVENGKPKLTKEHVQAIKEGRLKWSDLIKMGVIEYLDAE 616
Query: 611 IRCPDGGDGGRRNAFPA----------THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQC 660
NA+ A TH E+ P +L + A+L PY +HN +PRN Y
Sbjct: 617 ---------EEENAYVAMWPWEVTKEHTHLELMPAAILGLPASLIPYPEHNAAPRNTYGA 667
Query: 661 QMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYT 720
MAKQ++G + R D + + L PQ P+V + G ++ P G N +VAVLAY
Sbjct: 668 GMAKQSLGIGWANFRIRVDTRGHLLHYPQIPLVNSRIMKAVGYEDRPAGQNFVVAVLAYQ 727
Query: 721 GYDMEDAMILNKSSVDRGMCHGQIY-------------QTETIDLSDDGNKVDRGQKLFR 767
GY+MEDA+I+NK+S++RG+ + QT+ ++ + RG+K +R
Sbjct: 728 GYNMEDAIIINKASIERGLARSTFFRTYEAEEKKYLGGQTDKFEIPSPTVRGYRGEKYYR 787
Query: 768 RNKDAKSLHSVIDSDGLPY-----------VGQMIHP------GEPYCSIYDKTTNSWRT 810
+D DGL + +G+ P G S+ ++ S
Sbjct: 788 H----------LDEDGLIFPESKVEGKDVLIGRTSPPRFLEERGLGAVSLQERRETS--- 834
Query: 811 NSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPD 870
+ + SE VD V + + + + + R R P IGDKF+SRHGQKGV + P
Sbjct: 835 VAVRPSEKGIVDKVII--TETGDGTKLVKVTVRDLRIPEIGDKFASRHGQKGVIGLIVPQ 892
Query: 871 IDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
DMP++ +G+ PDLI+NPH PSRMT+ LLE++ K
Sbjct: 893 EDMPWTE-SGIVPDLIVNPHGIPSRMTVGQLLEAIGGK 929
>gi|260826766|ref|XP_002608336.1| hypothetical protein BRAFLDRAFT_126222 [Branchiostoma floridae]
gi|229293687|gb|EEN64346.1| hypothetical protein BRAFLDRAFT_126222 [Branchiostoma floridae]
Length = 1104
Score = 254 bits (650), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 248/944 (26%), Positives = 410/944 (43%), Gaps = 111/944 (11%)
Query: 34 MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFN---FGQFPVMLKTRRCHLQGADS 90
M + R ++Y+ L D+ + G + + G+ P+ML++ C L G
Sbjct: 111 MPNEARLRNLTYSAPLYVDITKTIVKDGEERIETQHQKTFIGKIPIMLRSTYCLLSGLTD 170
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
+ L L E + GGYFI+NG E+V +I ++ S+ + +D + +T + +
Sbjct: 171 RDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNSVYVFAKKDSKYAFTGE--IRS 225
Query: 151 CVR-KDQSSVTLKLYYLLNGSV---------RLGFWLQGKEYLLPVGIVLKALVDTNDLE 200
C+ + + TL ++ L G R+ L +P+ IV +AL +D +
Sbjct: 226 CLEHSSRPTSTLWVHMLARGGTGQRKSAIGQRIVAVLPYIRQEIPIIIVFRALGFVSDRD 285
Query: 201 IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
I H+ +D+ P + E +K L E + + L IG +
Sbjct: 286 ILEHIIYDFDD-----------PEMMEMLKPSLDEA--FVIQEQNVALNFIGA--RGAKP 330
Query: 261 GLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
G+ + A +++ + H+ ++ K L +++ +L D+ D
Sbjct: 331 GVTKDKRIKYAREILQKEMLPHVGISDYCETKKAYFLGYIVHRLLLAALGRRELDDRDHY 390
Query: 317 QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
N+ + L G L+ YL L L K ++ + + GK F+ LA IK ++
Sbjct: 391 GNKRLDLAGPLLA-YLFRGLFKNLTKEVRIYAQKFIDRGKDFNL-ELA-IK-------TR 440
Query: 377 QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
I ++ L TG Q Q RAG + RL F +S R ++ G +
Sbjct: 441 IITDGLKYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRLNSPIGRDG-KLA 498
Query: 437 SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
R+L WG +CP TP+G+ GL+ ++ ++ +D N + ++ L
Sbjct: 499 KPRQLHNSLWGMICPAETPEGQAVGLVKNLALMAYISMVHD---NGQAVGLVKNLALMAY 555
Query: 497 IGVGMIPS----------LPKLVKSGPPAVLS---VLLDGRVVGVIPSSEIEKVVAHLRR 543
I VG PS + L + P A+ + + ++G VGV + E+++ L++
Sbjct: 556 ISVGSQPSPILEFLEEWSMENLEEVAPSAIANATKIFVNGCWVGV--HRDPEQLMNTLKK 613
Query: 544 LK------VSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN 597
L+ VS S++ D E + G L K + ++ + E N
Sbjct: 614 LRRQMDIIVSEVSMVRDIREREIRIFTDAGRICRPLLIVEKQKLLLKKHHVDMLKEREYN 673
Query: 598 ------------IELIGPFEQ--VFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVAN 643
+E I E+ V + + D D G TH EIHP+ +L V A+
Sbjct: 674 NYSWQDLVAGGVVEYIDTLEEETVMLAMTPDDLQDKGVAYCSTYTHCEIHPSMILGVCAS 733
Query: 644 LTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGI 703
+ P+ DHNQSPRN YQ M KQ MG + R D + L PQ P+V T +
Sbjct: 734 IIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRF 793
Query: 704 DEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQ 763
E P G NAIVA+ +YTGY+ ED++I+N S++DRG+ Y++ S G +D+ +
Sbjct: 794 RELPAGINAIVAIASYTGYNQEDSVIMNASAIDRGLFRSVFYRSYKESESKKG--LDQEE 851
Query: 764 KLFRRNKDA-----KSLHSVIDSDGL-----------PYVGQMIHPGEPYCSIYDKTTNS 807
+ +D +++ +D DG+ +G+ + E + T
Sbjct: 852 IFEKPTRDEVTGMRNAIYDKLDDDGIIAPGVRVSGEDVIIGKTVTLPENEDELESTTKRF 911
Query: 808 WRTNSR---KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVC 864
+ +S + SE+ VD V V + + +R R R P IGDKF+SRHGQKG C
Sbjct: 912 TKRDSSTFLRSSETGIVDQVMVSINQEGY--KFCKVRVRSVRIPQIGDKFASRHGQKGTC 969
Query: 865 SQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
+ DMPF+ G+ PD+IINPHA PSRMTI L+E + K
Sbjct: 970 GITYRQEDMPFTA-EGISPDIIINPHAVPSRMTIGHLIECLQGK 1012
>gi|124804526|ref|XP_001348029.1| DNA-directed RNA polymerase 1, subunit 2, putative [Plasmodium
falciparum 3D7]
gi|23496284|gb|AAN35942.1| DNA-directed RNA polymerase 1, subunit 2, putative [Plasmodium
falciparum 3D7]
Length = 1517
Score = 254 bits (650), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 136/293 (46%), Positives = 176/293 (60%), Gaps = 24/293 (8%)
Query: 631 EIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQT 690
E+ T LS +A+LTP+SDHNQSPRN+YQCQM KQTMG + K+Y + TPQ
Sbjct: 934 ELKETSFLSFLASLTPFSDHNQSPRNIYQCQMLKQTMGIQSLNNVYTFTNKIYRMITPQF 993
Query: 691 PIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETI 750
P+V T Y YG+D +P+GTNA+VA+LAYTGYDMEDA+I+NK+S DRG+ IY+TE I
Sbjct: 994 PLVVTRDYEFYGVDNFPSGTNAVVAILAYTGYDMEDALIINKASADRGIFRTHIYKTEFI 1053
Query: 751 DLSDDGNKVD---------------RGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGE 795
DL G + + L NK ++ DGLP V Q I G
Sbjct: 1054 DLQKVGESSNFVFGNNIRYLNNNKNNNKNLAYENKGK-----FLNKDGLPCVQQKITEGS 1108
Query: 796 PYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFS 855
P S +K S + FVD+V++ NS Q A ++ R TR P +GDKF+
Sbjct: 1109 PLYSYINKGNELTTYESFRNHGEYFVDFVSIGKNNSN---QVAVVKLRSTRQPQVGDKFA 1165
Query: 856 SRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
SRHGQKGV S+L+P DMPF+ +G+ PD+I NPH PSRMTI ML+ES+ K
Sbjct: 1166 SRHGQKGVVSRLFPQEDMPFAE-SGIVPDIIFNPHGIPSRMTIGMLIESICGK 1217
Score = 117 bits (292), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 71/241 (29%), Positives = 124/241 (51%), Gaps = 27/241 (11%)
Query: 379 GTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSV 438
++I KTG ++++ L QQ++G+ + A+ +N LR I+ FRA+HRG F ++ +
Sbjct: 549 SSAILFFFKTGNISSE-NLHYQQKSGWVIAADEINNLRLITNFRAIHRGTFFQDVKVLTP 607
Query: 439 RKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIG 498
RKLL ESWGF+CPVHTPDG PCGLLNH+ C + N+ + +I L
Sbjct: 608 RKLLGESWGFICPVHTPDGTPCGLLNHLAQYCHIH-------NLSSNEAHKLNIKLYLKK 660
Query: 499 VGMIPSLPKLVKSGPPAV-----LSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIP 553
+G+ +L SG + + +++D + I + + V L+ K + +
Sbjct: 661 IGINVNLDD--TSGIHTIYDDENIPIIVDSIPITYIGEKDFNRTVYKLKYAKNNNLFNLK 718
Query: 554 DDLEV-GYV--PLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFME 610
E+ Y+ PL + + + T P + +RP+ N+ ++++IE I P Q ++
Sbjct: 719 SYFEINAYLNEPLIMN----SIIINTFPGRLIRPLLNL-----KTKDIEFISPSYQPYIS 769
Query: 611 I 611
+
Sbjct: 770 V 770
Score = 69.7 bits (169), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 72/307 (23%), Positives = 133/307 (43%), Gaps = 26/307 (8%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
C+ + +Y G+L+ + QY D + G P+M+ + C+L + ++L
Sbjct: 148 CKLSARTYEGELLIKINRQYKDE---IASTTICAGHIPIMIMSNLCNLSNLNKKELAQKG 204
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
E+ + +GG+F+++G +V R VI PK N +++ ++ D + I C+ D +
Sbjct: 205 EDQSLLGGFFVVSGRLKVIRYVIHPKYN---TLLLNA---------DNKIHINCLLNDNT 252
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLE-IFNHLTCCYDEK--YK 214
V L N S GF Q LP ++L L IFN + + + K
Sbjct: 253 VVINFLTLTRNNSYVYGFRFQNAVCSLPFHLLLMILSPIKKKSYIFNKIKLGVENENAIK 312
Query: 215 KEKGAVGSPLVSERV-KIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAET 273
+ + S + + + L E +LS R+ L+ I Y A+
Sbjct: 313 YIELFINSIFLKDTFNEKELFEKYNLSYLGRIAYLRR-------GIFKYNLNCYEKKAKD 365
Query: 274 VIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLK 333
+++ I H+ +N++KF + FM +KL N DSL+N + +L+ LK
Sbjct: 366 ILKYCILPHIKNNSEKFETMCFMFKKLIYSNFKLITPINKDSLENHAVTTCSNLLANLLK 425
Query: 334 EKLEDWL 340
+++ + L
Sbjct: 426 DQVMNSL 432
>gi|124028419|ref|YP_001013739.1| DNA-directed RNA polymerase subunit B [Hyperthermus butylicus DSM
5456]
gi|123979113|gb|ABM81394.1| DNA-directed RNA polymerase subunit B [Hyperthermus butylicus DSM
5456]
Length = 1138
Score = 254 bits (650), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 258/938 (27%), Positives = 412/938 (43%), Gaps = 145/938 (15%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTR-----RCHLQGAD--- 89
CR ++Y + A V ++ G E G PVML+++ RC +G
Sbjct: 87 CRIRDLTYAAPIKAKVVI--VENGIEREAEEIILGFLPVMLRSKADPLARCMYEGKSWKE 144
Query: 90 -SQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVV 148
QKL+ E+ + GGYFI+NG ERV VI Q +V + R G T A+
Sbjct: 145 CEQKLIEAGEDPRDPGGYFIINGSERVI--VIQEDQALNRILVGKA----RAG-TASALY 197
Query: 149 IRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCC 208
V + V ++ + L + +P I+++AL +D +I L
Sbjct: 198 TAKVISAHAGVRYQVILDYHKDGTLHVSMSRALSKIPFVILMRALGLESDRDIV--LAVS 255
Query: 209 YDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQS--ES 266
D + ++ +I + Q ++ T L ++G F+ +GL E
Sbjct: 256 PDPQIQQ--------------MLIPSLEQARAINTVEDALDYVGSRFR---EGLAKPREQ 298
Query: 267 YYAVAETVIRDYIFVHLNDN-NDKFNLLIFMLQ---KLFSLVDHTSVSDNPDSLQNQEIL 322
VAE ++ +F H+ + D+ +F+ Q KL V D+ D N+ +L
Sbjct: 299 RIRVAERILDTILFPHIGTSPKDRIRKALFLGQMAAKLLEYVAGRRKEDDKDHYANKRVL 358
Query: 323 LPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSI 382
L G LI + + I +D I++ +EK ++ S+
Sbjct: 359 LAGDLIAMVFR-----------------IAMRALAYD------IRQQLEKLRARGRHISL 395
Query: 383 ETMLK----TGRL--ATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
+++ T RL A TG QR G + +R N+L +S R V S RT
Sbjct: 396 RMIIRSDIITNRLREALATGNWPGQRTGVSQILDRTNWLSMLSHLRRVVSQLS----RTQ 451
Query: 437 ---SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSIL 493
R + WG +CP TP+G CGL+ ++ V++ D + D K+ S+
Sbjct: 452 PHFEARDVHGTQWGRICPFETPEGPNCGLVKNLALMAYVSAGVDDK----DVEKLLYSM- 506
Query: 494 RVLIGV-GMIPSLPKLVKSG--PPAVLS---VLLDGRVVGVIPSSEIEKVVAHLRRLK-- 545
GV + ++ K G PP + V L+GR++G P E K+ LR+L+
Sbjct: 507 ----GVRDAVELFEEVRKQGYYPPEYIKWSKVFLNGRLIGYHPDGE--KLAEELRKLRRS 560
Query: 546 ------VSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIE 599
VS + + + Y+ G +++ S RP L E + +
Sbjct: 561 GKLHYEVSVSVYRTETINEVYINTDPGRIMRPVFVVESGKLLYRPEHAEKLRKGEWRFSD 620
Query: 600 LIGPFEQVFMEIRCPDGGDGGRRNAFPA----------THEEIHPTGMLSVVANLTPYSD 649
L+ F++ + N + A TH EI P G+ V A+ PY++
Sbjct: 621 LVRNGIVEFLDAEEEE-------NTYIALNPEDLTPEHTHMEIWPAGIFGVTASTIPYAE 673
Query: 650 HNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTG 709
HNQSPRN YQ MAKQ +G + R D + + L P+ P+V+T G ++ P G
Sbjct: 674 HNQSPRNTYQAAMAKQALGLYAANFQIRVDTRSHLLHYPEKPLVQTRALELMGYNDRPAG 733
Query: 710 TNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHG---QIYQTE----------TIDLSDDG 756
N +VAV+++TGY++EDA+I+NKSS+DRG+ ++Y TE I++ +
Sbjct: 734 QNMVVAVMSFTGYNIEDAVIMNKSSIDRGLARSTFFRLYATEERRYPGGLSDKIEIPEAN 793
Query: 757 NKVDRGQKLFRR-NKDAKSLHSVIDSDGLPYVGQMIHPG--EPYCSIYDKTTNSWRTN-S 812
+ + +++++ + D V G +G+ P E Y T T+ +
Sbjct: 794 VEGSKPPEMYKKLDADGIISPEVEVKGGEVLIGKTSPPRFMEEYREFGTVTVRKRDTSVT 853
Query: 813 RKGSESVFVDYVAVDMKNSKNLP--QKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPD 870
+ E VD V + ++N+ + +R R R P +GDKF+SRHGQKGV L P
Sbjct: 854 MRHGEKGVVDTVII----TENIEGYKLVKVRVRDQRIPELGDKFASRHGQKGVIGMLIPQ 909
Query: 871 IDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
DMPF+ G+ PDLIINPHAFPSRMT+ L E++A K
Sbjct: 910 YDMPFTE-DGITPDLIINPHAFPSRMTLGQLFETIAGK 946
>gi|307204008|gb|EFN82912.1| DNA-directed RNA polymerase III subunit RPC2 [Harpegnathos
saltator]
Length = 1081
Score = 254 bits (650), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 252/934 (26%), Positives = 410/934 (43%), Gaps = 123/934 (13%)
Query: 23 FDYMLDEGLSEMFDH-CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTR 81
FD L++ + +++ H CR ++Y ++ D+E Y+ P+++ G+ P+ML++
Sbjct: 28 FDESLND-IRKLYPHECRLRDLTYAAPIIVDIE--YIRGNQPIIKNNIVIGRMPIMLRSA 84
Query: 82 RCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSF---RDR 138
C L G + +L + E + GGYFI+ G E+V +++ +Q MVR+ +D
Sbjct: 85 NCRLTGLTAHELSTKDECPHDPGGYFIIKGQEKV---ILIQEQ-----MVRNRILLEKDN 136
Query: 139 REGYTDKAVVIRCVRKDQSSVTLK--LYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDT 196
+E RK ++S+ K YY+ + + + V IV KA+
Sbjct: 137 KENIVAYCNSSTHERKTKTSIIGKSGRYYMKHNIFQDD---------ILVTIVFKAMGIH 187
Query: 197 NDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIG-EHF 255
D I + ++ + K E L E DL++ T+ Q L ++ +
Sbjct: 188 TDQNIVMLIGTEHEFQSKLEWS--------------LRECHDLNIFTQNQALMYLNSKRT 233
Query: 256 QPVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKFNL----LIFMLQKLFSLVDHTSVSD 311
QP + + V+ + H+ N F L L FM++K+ + + D
Sbjct: 234 QPRVFNANE------MKDVLATNVLSHVPVKNFSFKLKGIHLAFMVRKVIMAQSNKKLLD 287
Query: 312 NPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIEN-NGKKFDFFNLANIKKVM 370
+ D + N+ + + G L+++ ++ + + + K++ I +FD I K M
Sbjct: 288 DRDFVGNKRLEVAGSLLSLMFEDLFKRFNWELKQIADKNIPKIKAAQFD------IVKHM 341
Query: 371 EKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASF 430
++ QI + + TG + +R G T RL+++ + VH + F
Sbjct: 342 RQD---QITNGLLFAISTGNWKIKRFK--MERQGATQVLSRLSYISALGMMTRVH--SQF 394
Query: 431 AGLRTTS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMR 489
R S R L WG LCP TP+GE CGL+ ++ + + D +
Sbjct: 395 EKTRQVSGPRSLHLSQWGMLCPCDTPEGESCGLVKNLALMAHITT---------DEPEDH 445
Query: 490 TSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK---- 545
+ L + + I SL + L VLL+G + GV +S +K+V L+ L+
Sbjct: 446 IAWLLSTLDMQEIQSLGSQEINHKDEWL-VLLNGVIQGV--TSHYKKLVHTLKTLRRRGY 502
Query: 546 -VSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPF 604
S S+ D + GG Y + V ++ L ++ I F
Sbjct: 503 ISSFVSIYMQDNHRCVHISTDGGRLCRPYFIVENGRLVVTAEHMKLFQQK------ILKF 556
Query: 605 EQVFMEIRCPDGGDGGRRNAF-----------PATHEEIHPTGMLSVVANLTPYSDHNQS 653
E F++ + D N TH EI +L V A L PY HNQS
Sbjct: 557 ED-FLQTGMIEYLDVNEENDVLIALDENEIQAETTHMEIETFTILGVCAGLIPYPHHNQS 615
Query: 654 PRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAI 713
PRN YQC M +Q G + R D +Y+L PQ PIVRT T +E P G NAI
Sbjct: 616 PRNTYQCAMGRQAAGTIGYNQRKRMDTVMYNLVYPQAPIVRTKTSEMIKYNELPAGENAI 675
Query: 714 VAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKV-DR--GQKLFRRNK 770
VA+++Y GYD+EDA+++N++S+DRG IY++ L N+ DR G L
Sbjct: 676 VAIMSYGGYDIEDALVVNRASLDRGYGRCLIYRSTKAVLKRYPNQTYDRIMGPSLDSNTN 735
Query: 771 DAKSLHSVIDSDGLPYVGQMIH----------PGEPYCSIYDKTTNSWRTNSR------K 814
H ++D+DG+ G+ + P + + + S +T R K
Sbjct: 736 KVAWKHDILDADGIAMPGERVEDKKVLVNKSVPSQSIDRVNTGSDASPKTQYRDAEIYYK 795
Query: 815 GSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMP 874
G E +V+ + + K + R TR P IGDK SSRHGQKGV + D+P
Sbjct: 796 GLEPAYVEQSLLTSNADDSFLIK--LLLRQTRRPEIGDKLSSRHGQKGVIGSIVNPEDLP 853
Query: 875 FSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
F+ G+ PD+I+NPH FPSRMT+ L+E +A K
Sbjct: 854 FND-QGIVPDIIMNPHGFPSRMTVGKLIEILAGK 886
>gi|307208700|gb|EFN85990.1| DNA-directed RNA polymerase II subunit RPB2 [Harpegnathos saltator]
Length = 1123
Score = 254 bits (650), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 251/932 (26%), Positives = 403/932 (43%), Gaps = 108/932 (11%)
Query: 34 MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVR---ERFNFGQFPVMLKTRRCHLQGADS 90
M + R ++Y+ L D+ + G + ++ G+ P+ML+++ C L G
Sbjct: 57 MPNEARLRNLTYSAPLYVDITKTIMKDGEEPIETQHQKTFIGKIPIMLRSKYCLLAGLSD 116
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
+ L L E + GGYFI+NG E+V +I ++ ++ S +D + Y KA +
Sbjct: 117 RDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFSMKDGKYAY--KAEIRS 171
Query: 151 CVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
C+ + + TL + + + G+ + +P+ +V +AL D +
Sbjct: 172 CLEHSSRPTSTLWINMMAKSGASIKKSAIGQRIVAIIPYVKQEIPIMVVFRALGFVADRD 231
Query: 201 IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
I H+ +D+ P + E VK L E + + L IG
Sbjct: 232 ILEHIIYDFDD-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGTRGARA-- 276
Query: 261 GLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
G+ E A +++ + H+ ++ K L +M+ +L S D+ D
Sbjct: 277 GVTKEKRIKYAREILQKEMLPHVGISDFCETKKAYFLGYMVHRLLSASLGRRELDDRDHY 336
Query: 317 QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
N+ + L G L+ + ++ +++ + Q I + GK F+ LA IK +K
Sbjct: 337 GNKRLDLAGPLLAFLFRALFKNLMKEVRLYAQKFI-DRGKDFNL-ELA-IK-------TK 386
Query: 377 QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
I + L TG Q Q RAG + RL F +S R V+ G +
Sbjct: 387 IITDGLRYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRVNSPIGRDG-KLA 444
Query: 437 SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
R+L WG LCP TP+G GL+ ++ ++ + IL L
Sbjct: 445 KPRQLHNTLWGMLCPAETPEGAAVGLVKNLALMAYIS-----------VGSQPSPILEFL 493
Query: 497 IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAAS 550
M +L ++ S + ++G VG+ + ++++A LR+L+ VS S
Sbjct: 494 EEWSM-ENLEEIAPSAIADATKIFVNGCWVGI--HRDPDQLMATLRKLRRQMDIIVSEVS 550
Query: 551 VIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN----IELIGPF-- 604
+I D + + G L + R+I + E N EL+G
Sbjct: 551 MIRDIRDREIRIYTDAGRISRPLLIVEGQNLLLKKRHIDMLKERDYNNDGWQELVGSGVV 610
Query: 605 -------EQVFMEIRCPDGGDGGRRNAFPAT--HEEIHPTGMLSVVANLTPYSDHNQSPR 655
E+ M PD + A+ T H EIHP +L V A++ P+ DHNQSPR
Sbjct: 611 EYIDTLEEETVMIAMSPDDLRQEKEYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPR 670
Query: 656 NMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVA 715
N YQ M KQ MG + R D + L P P+V T + E P G N+IVA
Sbjct: 671 NTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVA 730
Query: 716 VLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT----ETIDLSDDGNKVDRGQKLFRRNKD 771
+L YTGY+ ED++ILN S+V+RG Y++ E+ + D + ++ +L +
Sbjct: 731 ILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKEAESKKIGDQEEQFEKPSRLTCQGM- 789
Query: 772 AKSLHSVIDSDGL-----------PYVGQMIHPGEPYCSIYDKTTNSWRTNSR----KGS 816
+++ +D DG+ +G+ I E + D TT + + S
Sbjct: 790 RNAIYDKLDDDGIIAPGIRVSGDDVIIGKTITLPETDDEL-DSTTKRFTKRDASTFLRNS 848
Query: 817 ESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFS 876
E+ VD V + + NS+ + IR R R P IGDKF+SRHGQKG C + DMPFS
Sbjct: 849 ETGIVDQVMLTL-NSEGY-KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFS 906
Query: 877 GVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
G+ PD+IINPHA PSRMTI L+E + K
Sbjct: 907 -CEGLTPDIIINPHAIPSRMTIGHLIECIQGK 937
>gi|341038522|gb|EGS23514.1| DNA-directed RNA polymerase-like protein [Chaetomium thermophilum
var. thermophilum DSM 1495]
Length = 1157
Score = 254 bits (649), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 256/965 (26%), Positives = 412/965 (42%), Gaps = 142/965 (14%)
Query: 8 DFEPLRELVRHHIESFDYMLDEGLSEMFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRE 67
+F +R L + D+ + ++ M CR ++Y ++ D+ Y +VR+
Sbjct: 83 EFTDIRVLTPTRNDYSDFKARDEVTPM--ECRLRDMTYAAPVVVDI--VYSRDRKRIVRK 138
Query: 68 RFNFGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYP 127
+ PVMLK+ +C L A + ++ + E + GGYFI+NG E+ VIL ++
Sbjct: 139 DIPLCRIPVMLKSSKCVLSKATNAQMEIMNECPLDPGGYFIINGTEK----VILIQEQLS 194
Query: 128 MSMVRSSFRDRREGYTDKAVVIRCVRKDQSSVTLKL-YYLLNGSVRLGFWLQGKEYLLPV 186
+ V ++ G RK ++ V LK +LN +V + +P+
Sbjct: 195 KNRVIVEADEKTGGVQASVTSSTHERKSKTYVILKKDRIVLNHNVLV--------EPIPI 246
Query: 187 GIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQ 246
IVLKAL +D +I E A G L + + E + T+ Q
Sbjct: 247 VIVLKALGGLSDYQIL-------------ELVAGGDALYQDDFLVNFDEATRAGVFTQQQ 293
Query: 247 CLQHIGEHFQ----------------PVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKF 290
L++IG + PV +GL + + +A I D F K
Sbjct: 294 ALEYIGLRVKMGGSKKGRSPNAPRRSPVEEGLDALTNLIIAHITIEDLDFY------PKA 347
Query: 291 NLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDE 350
+ M++++ + + D+ D + N+ L G L+++ +++ + ++ K
Sbjct: 348 IYIAMMVRRVLMAAHNPKLIDDRDFVGNKRFELAGQLLSLLFEDQFKMFIASLK------ 401
Query: 351 IENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTG------LDLQQRAG 404
G FF N + +P I + + + + A Q+G ++ RAG
Sbjct: 402 ----GNMEYFFKKPN--RTSAYDPVGPISSQGQYITQGLNRAIQSGNWTVRRFNM-NRAG 454
Query: 405 YTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLLPESWGFLCPVHTPDGEPCGLL 463
T RL+++ + + + F R S R L P WG LC TP+GE CGL+
Sbjct: 455 VTHVLSRLSYISALGMMTRI--SSQFEKTRKVSGPRALHPSQWGMLCTSDTPEGEACGLV 512
Query: 464 NHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGP----PAVLSV 519
++ + + D ++ I ++ GV P V +G P +
Sbjct: 513 KNLALMTHITTNADE-------EPVKDCIFDLVPGVE-----PIRVFTGSEMHRPGSYII 560
Query: 520 LLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPP 579
L+G + + ++ A R L+ + P +V + + +++ T
Sbjct: 561 HLNGTPFAL--TRHPKQFAARFRTLR-RRGHISP------FVSIHTNEHFSAIHIATDEG 611
Query: 580 KFVRPVRNIS-----LPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRN-AFPATHE--- 630
+ RP + L E + ++L F+ + + D N A A +E
Sbjct: 612 RICRPYIIVKDGKSRLKPEHLRLLQLGKASFDDFLRLGVVEYLDVNEENDALIAMNEDEI 671
Query: 631 -------EIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLY 683
EI P +L VA L P+ HNQSPRN YQC M KQ +G R D LY
Sbjct: 672 TRATTHMEIEPFTILGAVAGLIPFPHHNQSPRNTYQCAMGKQAIGAIAYNQFNRIDTLLY 731
Query: 684 HLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQ 743
L PQ P+V T T D+ P G NA V V++Y+GYD+EDA++LNK+S DRG Q
Sbjct: 732 TLVYPQRPMVITKTIQLIHYDKLPAGQNATVVVMSYSGYDIEDALVLNKASCDRGFGRCQ 791
Query: 744 IYQTETIDLSDDGNKVDRGQKLFRRNKDAK----SLHSVIDSDGLPYVGQMIHPGEPYCS 799
+++ T +L N R +L KD + + H+ +D DGL VG I GE
Sbjct: 792 VFRKYTAELQQYAN--GRKDRLGGPQKDEEGRTIAKHACLDRDGLAIVGYQIRSGE--TM 847
Query: 800 IYDKT---TNSWRTNSRKGSES-------------VFVDYVAVDMKNSKNLPQKANIRFR 843
I +T S +GS++ ++D V V N++ ++ R
Sbjct: 848 IMKETPVDVTSTGIGGDRGSDAYVPAPVNYRINDPAYIDKVMV--SNTEKNTAIIKVQTR 905
Query: 844 HTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLE 903
TR P +GDKFSSRHGQKGV + DMPFS +G+ PD+I+NPH FPSRMT+ L E
Sbjct: 906 QTRRPELGDKFSSRHGQKGVVGIIVNQEDMPFSD-SGIVPDIIMNPHGFPSRMTVGKLFE 964
Query: 904 SVAAK 908
+ K
Sbjct: 965 CLTGK 969
>gi|219116230|ref|XP_002178910.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217409677|gb|EEC49608.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 1211
Score = 254 bits (648), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 264/1016 (25%), Positives = 429/1016 (42%), Gaps = 180/1016 (17%)
Query: 9 FEPLRELVRHHIESFDYMLDEGLSEMFD-------------------------------- 36
F LR L+R HI+SFD+ +D + ++
Sbjct: 74 FLRLRSLLRQHIDSFDHFVDVEMQQIVQSPSACEIRSEHDPKFYLRYEACWVGEPSVEED 133
Query: 37 ----------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQ 86
CR +Y+ + +V +Y VV+ + G+ P+ML++++C L+
Sbjct: 134 SYSVKSATPFQCRLRDCTYSAPIYVNV--RYTRGRQIVVKRKVMIGRMPIMLRSKKCLLR 191
Query: 87 GADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKA 146
L +KE + GGYF++ G+E+V +++ +Q +S R + +G
Sbjct: 192 DRSEDDLAGMKECPYDPGGYFVIKGVEKV---ILIQEQ---LSKNRVILEEDNKGIMASI 245
Query: 147 VVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLT 206
RK ++ + +K NG V L G + +PV +VLKA+ +DLE+ +
Sbjct: 246 TSSTHERKSKAYILIK-----NGRVYLKNNTLGDD--IPVAVVLKAMGIESDLELVQLV- 297
Query: 207 CCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSES 266
SP+++ + + L E L + T+ Q L+ IG + S
Sbjct: 298 ------------GSESPIINA-LALSLEEPSRLGIHTQAQALRFIGAKIRGRSGPSGPSS 344
Query: 267 YYAV-------AETVIRDYIFVHLNDNNDKFN---LLIFMLQKLFSLVDHTSVS-DNPDS 315
Y A V+ + + H+ + F L I + + LV + D+ D
Sbjct: 345 SYRKNVSPEDEAREVLANVVLSHVPVTHFDFREKALYIGHIVRRVLLVHLGKMPLDDKDY 404
Query: 316 LQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPS 375
N+ + L G+L+++ L E L K K D + + + F++ +K + +
Sbjct: 405 YGNKRLELAGNLLSL-LFEDLFKIFNKDLKRQADLVLSKPNRTQAFDV--VKTIRPDTIT 461
Query: 376 KQIGTSIET---MLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAG 432
+ +I T +LK R+ RAG T RL+++ + ++ + F
Sbjct: 462 NGMINAIATGNWVLKRFRM---------DRAGVTQVLSRLSYMSALGMMTRIN--SQFEK 510
Query: 433 LRTTS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTS 491
R S R L P WG LCP TP+GE CGL+ ++ + + + R +
Sbjct: 511 TRKVSGPRSLQPSQWGMLCPADTPEGEACGLVKNLALLGHITT---DEADTRPIER---- 563
Query: 492 ILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASV 551
I R L GV + + + A L V L+G ++GV + ++V +LR+++
Sbjct: 564 ICRDL-GVEDVKRMTGHEINSHQAFL-VFLNGLILGV--HTRPRELVRNLRKMRRRG--- 616
Query: 552 IPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPV------------RNISLPSEESQNIE 599
L +V + L +++ T + RP+ + I + S ++
Sbjct: 617 ----LAGEFVSVYLHDEQCAVHIATDGGRVCRPLLIVDEETGLPKLQQIHMESLALGTMD 672
Query: 600 LIGPFEQVFME-IRCPDGGD----------------GGRRNAFPATHEEIHPTGMLSVVA 642
+ Q +E + C + + G TH E+ P +L VV
Sbjct: 673 ITDLMRQGIVEYVDCNEENNTLIAVTERDLEVAILHGLETRKMRYTHLEVDPFTILGVVG 732
Query: 643 NLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYG 702
+ P+ HNQSPRN Y MAKQ MG R D +Y L PQ P+V++ T
Sbjct: 733 GIIPFPHHNQSPRNTYTVAMAKQAMGSVSMNQYERMDGLIYTLIYPQKPMVKSRTLDLVN 792
Query: 703 IDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGN-KVDR 761
D P G NA +AV++Y+GYD+EDA+ILNK++VDRG + + + N +DR
Sbjct: 793 FDNIPGGHNACIAVMSYSGYDIEDAIILNKAAVDRGFGRCMVLRKHQTSVRRYANGTMDR 852
Query: 762 -----GQKLFRRNKDAKSL--HSVIDSDGLPYVGQMIHPGEPYC---SIYDKTTNSWRTN 811
F +D K + ID DG+ VG+ I G S D T+N +
Sbjct: 853 TCAPPDPGSFPDGEDDKRFARYMAIDKDGICRVGEKIENGSVMVNKESPADTTSNMAGVD 912
Query: 812 -------------------SRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGD 852
S +GS S +VD V + ++ K + R R P IGD
Sbjct: 913 FGFNSGMSMAHLNYKPSGVSYRGSASTYVDKVLITSNENEQFLIK--VMLRQVRRPEIGD 970
Query: 853 KFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
KF+SRHGQKGVC + P+ D+PF+ G PDLI+NPH FPSRMT+ LLE + K
Sbjct: 971 KFASRHGQKGVCGLIVPEEDLPFNEF-GHVPDLIMNPHGFPSRMTVGKLLELLVGK 1025
>gi|385805646|ref|YP_005842044.1| RNA Polymerase [Fervidicoccus fontis Kam940]
gi|383795509|gb|AFH42592.1| RNA Polymerase [Fervidicoccus fontis Kam940]
Length = 1141
Score = 254 bits (648), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 246/935 (26%), Positives = 418/935 (44%), Gaps = 147/935 (15%)
Query: 37 HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
R I+Y + +E ++ G ++++ G P+M+K++ L ++L+ +
Sbjct: 101 EARVRNITYASPMY--LEITLVENGVESIKDKVYIGDLPIMIKSKLDPLSKMSPEELIKI 158
Query: 97 KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREG----YTDKAVVIRCV 152
E+ + GGYFI+NG E+V I+ +++ M R + + G YT KA I
Sbjct: 159 NEDPDDPGGYFIINGTEKV----IIAQED--MVTNRVLVDEGKAGSNVLYTAKA--ISST 210
Query: 153 RKDQSSVTLKLYYLLNGSVRLGFW-LQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDE 211
+ SV ++L+ +G++ + F + GK LP I+++AL D +I ++
Sbjct: 211 GSYRISVMMELHK--DGTITISFGGVPGK---LPFAILMRALGFEKDQDIVYAVS----- 260
Query: 212 KYKKEKGAVGSPLVSERVKIILAEVQ-DLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAV 270
L E ++L ++ S+ T L +IG V G E+
Sbjct: 261 ------------LNPEVQSLLLPSLEASRSIATVDDALDYIGTR---VAIGQVRENRIER 305
Query: 271 AETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVS----DNPDSLQNQEILLPGH 326
A+ VI Y F HL + F L ++ +++ S+ D+ D N+ + L G
Sbjct: 306 AKQVIDKYFFPHLGSSPKDRRKKGFFLAQMANMILELSLGWREPDDRDHYANKRLKLAGD 365
Query: 327 LITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETML 386
L+ + ++++ K F++ +KV+ ++ +I + + + +
Sbjct: 366 LLATLFRASFKNFV---------------KDFNY----QAEKVLTRSKRFKISSIVRSDV 406
Query: 387 KTGRL--ATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPE 444
T R+ A TG + + G + +R N++ +S R V S + R L
Sbjct: 407 MTERIRHALATGTWVGGKTGVSQLLDRTNWMSMLSHLRRVVSPLSRSQ-PLFKARDLHGT 465
Query: 445 SWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIP- 503
WG +CP TP+G CGL+ +++ + + + L +G+IP
Sbjct: 466 QWGRMCPFETPEGPNCGLVKNLSLLTYITVGISEK-----------KVENQLYKLGVIPV 514
Query: 504 --SLPKLVKSGPPAVLS---VLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEV 558
+L V++ L V L+GR +G P E K+ + +R ++ + ++ V
Sbjct: 515 EEALKDAVENNNTQYLEMTRVYLNGRHIGYYPDGE--KLASTIREMRRKGD--LHHEINV 570
Query: 559 GYVPLSLGGAYPGLYLFTSPPKFVRP---VRNISLPSEESQNIELIGPFEQVFME----- 610
Y LY+ T + RP VRN P+ ++IE + E+ F +
Sbjct: 571 VYYERP---QIKELYVNTDAGRIRRPLIIVRN-GKPAVTKRDIEALRKGEKTFSDLVKEG 626
Query: 611 -IRCPDGGDGGRRNAFPA--------------THEEIHPTGMLSVVANLTPYSDHNQSPR 655
I D + NA+ A TH E+ G+ V A+ PY +HNQSPR
Sbjct: 627 KIEYLDAEE--EENAYIALDPSDLLGPNGKEYTHLELWTAGIFGVAASTIPYIEHNQSPR 684
Query: 656 NMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVA 715
N YQ M KQ +G R D + + L P+ P+V+T +E P G NA+VA
Sbjct: 685 NTYQSAMVKQALGLYAANFNVRTDSRGHILHHPEKPLVQTKPLEVIRYNEKPAGQNAVVA 744
Query: 716 VLAYTGYDMEDAMILNKSSVDRGMCHGQIY-------------QTETIDLSDDGNKVDRG 762
+++YTGY++EDA+I NKSSV+RG + Q + I++ + G K+ RG
Sbjct: 745 IMSYTGYNIEDALIFNKSSVERGFMRSTFFRLYSTEEKKYPGGQEDKIEVPEAGVKIYRG 804
Query: 763 QKLFRR-NKDAKSLHSVIDSDGLPYVGQMIHPG--EPY------CSIYDKTTNSWRTNSR 813
+++++ + D +DG +G+ P E + S+ T+ + R +
Sbjct: 805 FEVYKKLDPDGIISPETEVADGEALIGKTSPPRFLEEFKEYGFGASVRKDTSVTIRYGEK 864
Query: 814 KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDM 873
+SVF+ ++ + +R R R P IGDKF+SRHGQKGV L P DM
Sbjct: 865 GVVDSVFIS-------ETQEGDKLVKVRVRDYRIPEIGDKFASRHGQKGVIGMLIPQYDM 917
Query: 874 PFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
P++ G+ PD+IINPHAFPSRMT+ LLE +A K
Sbjct: 918 PYTE-EGIVPDIIINPHAFPSRMTLGQLLEMLAGK 951
>gi|330833900|ref|YP_004408628.1| DNA-directed RNA polymerase subunit B [Metallosphaera cuprina Ar-4]
gi|329566039|gb|AEB94144.1| DNA-directed RNA polymerase subunit B [Metallosphaera cuprina Ar-4]
Length = 1124
Score = 254 bits (648), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 256/982 (26%), Positives = 420/982 (42%), Gaps = 157/982 (15%)
Query: 13 RELVRHHIESFDYMLDEGLSEMFDHCRQAKISYT--------GKL-----------MADV 53
R LVR H++SF+ + L E+ D QA+I+ GK+ D
Sbjct: 18 RGLVRQHLDSFNDFIKNKLQEIIDE--QAEITTEIPGLKIRLGKIRVGKPRVREADKGDK 75
Query: 54 EFQYLDA-------GSPVVRE-------------RFNFGQFPVMLKTRRCHLQGADSQKL 93
E ++A +PV E G P+MLK+ S+KL
Sbjct: 76 EITPMEARLRNLTYAAPVYLEMTPIENNIEGDLTEVYIGDIPIMLKSIADPTSEFTSEKL 135
Query: 94 VSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVR 153
V + E+ + GGYFI+NG ERV I+ +++ + V + T A +I
Sbjct: 136 VEIGEDPKDPGGYFIVNGSERV----IVTQEDLATNRVLTDVGKTGSNITHTAKIISSTS 191
Query: 154 KDQSSVTLKLYYLLNGSVRLGF-WLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEK 212
+ +T++ L + ++ + F + GK +P I+++AL D EI L D
Sbjct: 192 GYRVPITIE--KLKDSTIHVSFPAVPGK---IPFAILMRALGIETDEEI--TLAVSLDPD 244
Query: 213 YKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAE 272
+ E ++ + Q S+ ++ L IG + G + E AE
Sbjct: 245 IQNE--------------LLPSIEQASSIISKDDALDFIGNR---IAIGQKREMRIQKAE 287
Query: 273 TVIRDYIFVHL----NDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLI 328
V+ Y H+ +D K L F + KL L D+ D N+ + L G L
Sbjct: 288 QVLDKYFLPHIGTNASDRTAKAYYLAFAVSKLIELYLGRREPDDKDHYANKRLKLAGDLF 347
Query: 329 TIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKT 388
+ K ++D + F L KV + + + + +
Sbjct: 348 ASLFRVAF-------KAFVKDLV---------FQLEK-SKVRGRRLAVNALVRQDIISER 390
Query: 389 GRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFA-GLRTTSVRKLLPESWG 447
R A TG + R G + +R N+L +S R V +S A G R L WG
Sbjct: 391 IRHALATGNWVGGRTGVSQLLDRTNWLSMLSHLRRVV--SSLARGQPNFEARDLHGTQWG 448
Query: 448 FLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPK 507
+CP TP+G GL+ ++ +++ + + S+ R+L +G+IP
Sbjct: 449 RMCPFETPEGPNSGLVKNLALLGQISVGVNEK-----------SVERLLYNLGVIPIEEV 497
Query: 508 LVKSGPPAVLS--------VLLDGRVVGVIPS-SEIEKVVAHLRRLKVSAASVIPDDLEV 558
+ K S V+L+GR++G P+ SE+ + + RR + D++ V
Sbjct: 498 IKKYRSQEEKSEDYENWSKVILNGRLIGYYPNGSELAEKIREKRR-----EGELSDEVNV 552
Query: 559 GYVPLSLGGAYPGLYLFTSPPKFVRPVRNI--SLPSEESQNIELIGP----FEQVFMEIR 612
Y Y +Y+ + + RP+ + P ++IE + F+ + E +
Sbjct: 553 NYTRTE---TYNEVYINSDSGRVRRPLIVVRHGKPLVTKEDIENLKKGKITFDTLIREGK 609
Query: 613 CPDGGDGGRRNAFPA----------THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQM 662
NA+ A TH EI +L + A++ PY +HNQSPRN YQ M
Sbjct: 610 IEFLDAEEEENAYIALEPKDVTKDHTHLEIWTPAILGITASIIPYPEHNQSPRNTYQSAM 669
Query: 663 AKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGY 722
AKQ +G + R D + + L PQ PIV+T G E P G NAI A+++YTGY
Sbjct: 670 AKQALGLYAANYQIRTDTRAHLLHYPQKPIVQTRALEAIGYTERPAGNNAIFALMSYTGY 729
Query: 723 DMEDAMILNKSSVDRGMCHGQIY-------------QTETIDLSDDGNKVDRGQKLFRRN 769
+MEDA+I+NKSS++RGM + Q + I L + G + +G+ +R
Sbjct: 730 NMEDAVIMNKSSIERGMFRSTFFRLYSAEEIKYPGGQEDEILLPEPGVRGYKGKDYYRLL 789
Query: 770 KDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSR---KGSESVFVDYVAV 826
+ + +D G + + P + + + + ++ + E VD V V
Sbjct: 790 ESNGIVSPEVDVKGGDVLIGKVSPPRFLQEFKELSPDQAKRDTSIITRHGERGTVDLVLV 849
Query: 827 DMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLI 886
+ N + +R R R P IGDKF++RHGQKGV + P +DMP++ +G+ PD+I
Sbjct: 850 TETSEGN--KLVKVRVRDLRIPEIGDKFATRHGQKGVVGMIIPQVDMPYT-TSGLTPDII 906
Query: 887 INPHAFPSRMTIAMLLESVAAK 908
+NPHA PSRMT+ ++E+++ K
Sbjct: 907 LNPHALPSRMTVGQIMEALSGK 928
>gi|347829558|emb|CCD45255.1| hypothetical protein [Botryotinia fuckeliana]
Length = 506
Score = 254 bits (648), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 142/382 (37%), Positives = 227/382 (59%), Gaps = 22/382 (5%)
Query: 37 HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
CR+ ++Y GK+ A +E+ ++ G P R + GQ P+ML + +CHLQ +LV
Sbjct: 124 ECRERHVTYRGKMSARMEYS-INNGDPKEFIR-DLGQLPLMLMSNKCHLQNNSPAQLVQK 181
Query: 97 KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQ 156
KEE+ E+GGYF++NG+E++ R +++ ++N+PM+++R SF+ R YT+ ++IR VR DQ
Sbjct: 182 KEESEELGGYFVVNGIEKIIRLLVVNRRNFPMAIIRPSFKGRGPTYTEFGMLIRSVRPDQ 241
Query: 157 SSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKE 216
+S T L+YL +G+V F + E+L+P ++LKALV+TND EIF L
Sbjct: 242 TSQTNVLHYLNDGNVTFRFSWRKNEFLVPAMMILKALVETNDKEIFEGLVGA-----AGS 296
Query: 217 KGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIR 276
KGA + +++RV+++L + L T+ + ++GE F+ V+ + S Y V +R
Sbjct: 297 KGAENT-FLTDRVELLLRTYKAYGLYTKSKTRAYLGEKFRIVLGVPDTMSNYDVGTEFLR 355
Query: 277 DYIFVHLNDNN-------DKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
+ VHL + + DKF +L+FM +KL+SLV DNPD++QNQEILL G L
Sbjct: 356 KIVLVHLGNTDVTEAQDKDKFKMLLFMTRKLYSLVAGDCAGDNPDAVQNQEILLGGFLFG 415
Query: 330 IYLKEKLEDWLRKGKKL-----IQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIET 384
+ +KE+LEDWL ++ ++ ENN +F +K N +Q+G ++E
Sbjct: 416 MIIKERLEDWLHTSLRMALRDYVRRSPENNFATPEFLKDFPVKICSRTN--EQVGGALEY 473
Query: 385 MLKTGRLATQTGLDLQQRAGYT 406
+ TG L + TGLDLQQ +G+T
Sbjct: 474 FMSTGNLVSPTGLDLQQTSGFT 495
>gi|332022245|gb|EGI62560.1| DNA-directed RNA polymerase II subunit RPB2 [Acromyrmex echinatior]
Length = 1178
Score = 253 bits (647), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 254/935 (27%), Positives = 404/935 (43%), Gaps = 114/935 (12%)
Query: 34 MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVR---ERFNFGQFPVMLKTRRCHLQGADS 90
M + R ++Y+ L D+ G V ++ G+ P+ML+++ C L G
Sbjct: 112 MPNEARLRNLTYSAPLYVDITKTIEKDGEDPVETQHQKTFIGKIPIMLRSKYCLLAGLSD 171
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
+ L L E + GGYFI+NG E+V +I ++ ++ S +D + Y KA +
Sbjct: 172 RDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFSMKDGKYAY--KAEIRS 226
Query: 151 CVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
C+ + + TL + + + G+ + +P+ +V +AL D +
Sbjct: 227 CLEHSSRPTSTLWINMMAKSGASIKKSAIGQRIIAIIPYIKQEIPIMVVFRALGFVADRD 286
Query: 201 IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
I H+ +D+ P + E VK L E + + L IG +
Sbjct: 287 ILEHIIYDFDD-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGT--RGAKP 331
Query: 261 GLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
G+ E A +++ + H+ ++ K L +M+ +L S D+ D
Sbjct: 332 GVTKEKRIKYAREILQKEMLPHVGISDFCETKKAYFLGYMVHRLLSASLGRRELDDRDHY 391
Query: 317 QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
N+ + L G L+ + ++ L K +L + + GK F+ LA IK +K
Sbjct: 392 GNKRLDLAGPLLAFLFRGLFKN-LMKEVRLYAQKFIDRGKDFNL-ELA-IK-------TK 441
Query: 377 QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
I + L TG Q Q RAG + RL F +S R V+ G +
Sbjct: 442 IITDGLRYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRVNSPIGRDG-KLA 499
Query: 437 SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
R+L WG LCP TP+G GL+ ++ ++ + IL L
Sbjct: 500 KPRQLHNTLWGMLCPAETPEGAAVGLVKNLALMAYIS-----------VGSQPSPILEFL 548
Query: 497 IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAAS 550
M +L ++ S + ++G VG+ + ++++A LR+L+ VS S
Sbjct: 549 EEWSM-ENLEEIAPSAIADATKIFVNGCWVGI--HRDPDQLMATLRKLRRQMDIIVSEVS 605
Query: 551 VIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN----IELIGPF-- 604
++ D + + G L + R+I++ E N EL+G
Sbjct: 606 MVRDIRDREIRIYTDAGRISRPLLIVEGQNLLLQTRHINMLKERDYNNDGWQELVGSGVV 665
Query: 605 -------EQVFMEIRCPDGGDGGRRNAFPAT--HEEIHPTGMLSVVANLTPYSDHNQSPR 655
E+ M PD + A+ T H EIHP +L V A++ P+ DHNQSPR
Sbjct: 666 EYIDTLEEETVMIAMSPDDLRQEKEYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPR 725
Query: 656 NMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVA 715
N YQ M KQ MG + R D + L P P+V T + E P G N+IVA
Sbjct: 726 NTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVA 785
Query: 716 VLAYTGYDMEDAMILNKSSVDRGMCHGQIY----QTETIDLSDDGNKVDRGQKLF---RR 768
+L YTGY+ ED++ILN S+V+RG Y ++E+ + D + ++ +L R
Sbjct: 786 ILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKESESKKIGDQEEQFEKPSRLTCSGMR 845
Query: 769 NKDAKSLHSVIDSDGL-----------PYVGQMIHPGEPYCSIYDKTTNSWRTNSR---- 813
N +++ +D DG+ +G+ I E + D TT +
Sbjct: 846 N----AIYDKLDDDGIIAPGIRVSGDDVIIGKTITLPETDDEL-DSTTKRFTKRDASTFL 900
Query: 814 KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDM 873
+ SE+ VD V + + NS+ + IR R R P IGDKF+SRHGQKG C + DM
Sbjct: 901 RNSETGIVDQVMLTL-NSEGY-KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDM 958
Query: 874 PFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
PFS G+ PD+IINPHA PSRMTI L+E + K
Sbjct: 959 PFSS-EGLTPDIIINPHAIPSRMTIGHLIECIQGK 992
>gi|14591329|ref|NP_143407.1| DNA-directed RNA polymerase subunit B [Pyrococcus horikoshii OT3]
gi|3257974|dbj|BAA30657.1| 1117aa long hypothetical DNA-directed RNA polymerase subunit B
[Pyrococcus horikoshii OT3]
Length = 1117
Score = 253 bits (647), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 258/988 (26%), Positives = 425/988 (43%), Gaps = 179/988 (18%)
Query: 15 LVRHHIESFDYMLDEGLSEMFDHCRQAK-------ISYTGKLMADVEFQ----------- 56
LVR H++S++ ++ GL E+ D K + + + + EFQ
Sbjct: 27 LVRQHLDSYNAFIERGLQEVVDEFGGIKPDIPDFEVKFGKIRVGEPEFQEPHGQRKPLYP 86
Query: 57 --------------YLDAGSPVVRE------RFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
YL+ PV+R G+ P+MLK++ C L G ++L+ L
Sbjct: 87 MDARIRNLTYSAPLYLEM-IPVIRGIEQDPVEVRIGELPIMLKSKACRLYGLSDEELIKL 145
Query: 97 KEEAAEMGGYFILNGLERVFRSV--ILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRK 154
E+ + GGYFI+NG ERV S+ I P + ++V +R+E Y K R +
Sbjct: 146 GEDPKDPGGYFIINGSERVIVSIEDIAPNR----TLVEKD--ERQEKYIAKVFSYRHGYR 199
Query: 155 DQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGI-----------VLKALVDTNDLEIFN 203
+V K K+ +L VGI V++AL D +I +
Sbjct: 200 ALVTVERK-----------------KDGILYVGIPNVPRPVKFVYVMRALGLERDKDIVD 242
Query: 204 HLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLS-LTTRLQCLQHIGEHFQPVIDGL 262
AVG+ E +I+ ++D S +TT+ + L++IG+ P G
Sbjct: 243 ---------------AVGND--PEVQQILFDNLEDASDITTQQEALEYIGKLVAP---GQ 282
Query: 263 QSESYYAVAETVIRDYIFVHLN----DNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQN 318
E AE VI + + H+ D K L M K+ L D+ D N
Sbjct: 283 AREYRLKRAEYVIDNNLLPHMGVTPEDRIRKAYYLGMMALKVIELSLGKRDEDDKDHYAN 342
Query: 319 QEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQI 378
+ + L G L+ + ++ + + + G+K+ F N+ I
Sbjct: 343 KRLRLAGDLLKDLFRVAFSQLIKDIQYQMTKTYQRRGEKYVFSNIHRF-----------I 391
Query: 379 GTSIETMLKTGRL--ATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
SI + T R+ A TG R G + +R N++ +S R V
Sbjct: 392 RNSIRPDVLTERIEHALATGAWPGGRTGVSQLLDRTNYVSTLSHLRRVTSPLDREQPHFE 451
Query: 437 SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
+ R L WG +CP TP+G CGL+ ++ ++ + +R++ L
Sbjct: 452 A-RDLHGTHWGRICPTETPEGPNCGLVKNLALMAQITTAVPEE-EVREY----------L 499
Query: 497 IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSE--IEKVVAHLRRLKVSAASVIP- 553
+ +G++P V+ P + V L+G ++G + + +E++ R K+S +
Sbjct: 500 MSLGIVPI---EVRRPSPELWRVYLNGVLIGTVEDGKALVERIKKDRRSGKISDIINVAY 556
Query: 554 -DDLEVGYVPLSLGGA-YPGLYLFTSPPKFVRP-VRNISLPSEESQNIELIGPFEQVFME 610
+D++ YV G P + + PK + V+ I + ++ +G E + E
Sbjct: 557 YEDVKEVYVNSDDGRVRRPLIIVENGVPKLTKEHVQAIKEGRLKWSDLVRMGVIEYLDAE 616
Query: 611 IRCPDGGDGGRRNAFPA----------THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQC 660
NA+ A TH E+ P +L + A+L PY +HN +PRN Y
Sbjct: 617 ---------EEENAYVAMWPWEVTKEHTHLELMPAAILGLPASLIPYPEHNAAPRNTYGA 667
Query: 661 QMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYT 720
MAKQ++G + R D + + L PQ P+V + G ++ P G N +VAVLAY
Sbjct: 668 GMAKQSLGLGWANFRIRVDTRGHLLHYPQIPLVNSRIMKAVGYEDRPAGQNFVVAVLAYH 727
Query: 721 GYDMEDAMILNKSSVDRGMCHGQIYQT-ETIDLSDDGNKVDRGQ--KLFRRNKDAKSLHS 777
GY+MEDA+I+NK+S++RG+ ++T E + G + DR + R + +
Sbjct: 728 GYNMEDAIIINKASIERGLARSTFFRTYEAEEKKYLGGQTDRFEIPAPTVRGYRGEKYYR 787
Query: 778 VIDSDGLPY-----------VGQMIHP------GEPYCSIYDKTTNSWRTNSRKGSESVF 820
+D DGL + +G+ P G S+ ++ S + + SE
Sbjct: 788 HLDEDGLIFPESKVEGKDVLIGRTSPPRFLEERGLGAVSLQERRETS---VAVRPSEKGI 844
Query: 821 VDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTG 880
VD V + + + + + R R P IGDKF+SRHGQKGV + P DMP++ +G
Sbjct: 845 VDKVII--TETGDGTKLVKVTVRDLRIPEIGDKFASRHGQKGVIGLIVPQEDMPWTE-SG 901
Query: 881 MRPDLIINPHAFPSRMTIAMLLESVAAK 908
+ PDLI+NPH PSRMT+ LLE++ K
Sbjct: 902 IVPDLIVNPHGIPSRMTVGQLLEAIGGK 929
>gi|301110510|ref|XP_002904335.1| DNA-directed RNA polymerase III subunit 127.6 kDa polypeptide
[Phytophthora infestans T30-4]
gi|262096461|gb|EEY54513.1| DNA-directed RNA polymerase III subunit 127.6 kDa polypeptide
[Phytophthora infestans T30-4]
Length = 1166
Score = 253 bits (646), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 269/1009 (26%), Positives = 416/1009 (41%), Gaps = 175/1009 (17%)
Query: 9 FEPLRELVRHHIESFDYM--------------------------------------LDE- 29
F LR LV+ HI+SFDY +DE
Sbjct: 38 FLQLRGLVKQHIDSFDYFTSVDMRNIVRAQANNVVRSDADPKFFLQYTDIQLGAPSIDEE 97
Query: 30 ---GLSEMFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQ 86
S CR +Y + V +Y V + G+ P+ML++ RC L
Sbjct: 98 AFVSASVTPHQCRLRDRTYAAPVYVSV--RYRRGNKIVTNNKVLIGRIPIMLRSSRCVLA 155
Query: 87 GADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKA 146
G L LKE + GGYFI+ G+E+V V++ +Q + ++ +G +
Sbjct: 156 GKSEAALAKLKECPYDPGGYFIVRGVEKV---VLIHEQ-----LSKNRVIIEEDGKHNVC 207
Query: 147 VVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLT 206
I ++ S T +L G V L G + +P+ IV + + +D EI + +
Sbjct: 208 ASITSSTHERKSRTN--IFLNKGRVYLKSNSFGSD--IPIVIVFRGMGVESDQEIVSLVG 263
Query: 207 CCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPV--IDGL-- 262
D + + + E DL + T+ Q L++IG + I +
Sbjct: 264 SESD--------------ICDALSASFEEASDLKVFTQQQALEYIGSKMNALTKIGAMGG 309
Query: 263 ----------QSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQK-----LFSLVDHT 307
+ A + + + + H+ +N F L + LF+ D T
Sbjct: 310 RHRGGAGRPQNDRNLVDAARSALANLVLNHVPCDNFNFRLKSIYVAHIVRRILFTDKDRT 369
Query: 308 SVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIK 367
+ D+ D N+ + L G L+++ ED ++ ++ + + K N A++
Sbjct: 370 RL-DDKDYYGNKRLELAGQLLSLLF----EDLFKRFNSDLKRQADMVLSKP---NRASVF 421
Query: 368 KVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRG 427
+++ + I L TG + RAG T RL+++ + +
Sbjct: 422 DILKCVRTDTITQGFYHALSTGNWTLKRFR--MDRAGVTHVLSRLSYMSALGMMTRI--S 477
Query: 428 ASFAGLRTTS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFS 486
+ F R S R L P WG LCP TP+GE CGL+ ++ C V S
Sbjct: 478 SQFEKTRKVSGPRSLQPSQWGMLCPADTPEGEACGLVKNLALLCHVTS-----------D 526
Query: 487 KMRTSILRVLIGVGMIP-SLPKLVKSGPPAVLSVLLDGRVVG--VIPSSEIEKVVAHLRR 543
+ I R+ +G+ SL + + V+L+G ++G V P + V LRR
Sbjct: 527 EEPAPIKRLCFDLGVTDVSLSSGEEINHASNYLVMLNGVIIGTHVNPRA----FVTRLRR 582
Query: 544 LKVSA-----ASVIPDDLEVGYVPLSLGGAYPGLYLFTSP------------PKFVRPVR 586
++ + SV+ D++ S GG L P + VR
Sbjct: 583 IRRAGLIGEFVSVMIHDVQRVVYIASDGGRVCRPLLLIDPVTHRTRLTQRHLDELRAGVR 642
Query: 587 NISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTP 646
++S E +E + E+ + + G R TH EI P +L VV+ L P
Sbjct: 643 DLSSLIVEG-CVEYVDVNEENNCLVALHESEIGDR-----TTHLEIDPVTILGVVSGLIP 696
Query: 647 YSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEY 706
Y HNQSPRN YQC M KQ +G R D LY + PQ P+V+T D
Sbjct: 697 YPHHNQSPRNTYQCAMGKQAIGTIAMNQFERIDTLLYTMVYPQMPMVKTRVLDLVNFDRV 756
Query: 707 PTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQI---YQTETIDLSD--------- 754
P G NAIVAV++Y+GYD+EDA++LNK+S+DRG + YQT ++
Sbjct: 757 PAGQNAIVAVMSYSGYDIEDAIVLNKASLDRGFGRCMVFKKYQTMIKKYANGSYDRIVGP 816
Query: 755 -DGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKT--------- 804
D + + ++AK S +D+DG+ VG ++ G + T
Sbjct: 817 PDFDSLAAAGGAGMGFRNAK--FSSLDADGISRVGGIVQNGAIMINKEQPTQFNDSVDGR 874
Query: 805 -----TNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHG 859
T S + KG +VD V + + + K I R TR P IGDKFSSRHG
Sbjct: 875 DPLDVTYSPSPTTYKGPIPAYVDKVLLTSSEANHFLVKVLI--RQTRRPEIGDKFSSRHG 932
Query: 860 QKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
QKGVC + DMPF+ G+ PDLI+NPH FPSRMT+ ++E +A K
Sbjct: 933 QKGVCGTIRNQEDMPFND-QGICPDLIMNPHGFPSRMTVGKMIELIAGK 980
>gi|146088594|ref|XP_001466094.1| putative RNA polymerase I second largest subunit [Leishmania infantum
JPCM5]
gi|134070196|emb|CAM68531.1| putative RNA polymerase I second largest subunit [Leishmania infantum
JPCM5]
Length = 1616
Score = 253 bits (645), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 177/564 (31%), Positives = 283/564 (50%), Gaps = 66/564 (11%)
Query: 401 QRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPC 460
Q +G+ V AE LNF RF R VHRG + A +R++ VRK E++GF+C V +PDGE C
Sbjct: 852 QTSGWVVMAEHLNFYRFFEQLRCVHRGKTIADMRSSEVRKYPCEAYGFICMVQSPDGEDC 911
Query: 461 GLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVL 520
G+LNH++ + ++ D+ +++R + + + GV + +V V V
Sbjct: 912 GVLNHLSLSTISSNSPDAAMT----AQLREIVCKAVPGVRSRATHSTVVDQLCETV-PVW 966
Query: 521 LDGRVVGVIPSSEIEKVVAHLR-------RLKVSAASVIP-------DDLEVGYV-PLSL 565
++G ++G + ++ + A LR R +V ++ LEV YV P +
Sbjct: 967 MEGELLGYLSPADAVEAAARLRQRKALTLRSQVHVTGIVRRKDASPLHTLEVVYVAPKNK 1026
Query: 566 GGAYPGLYLFTSPPKFVRPVRNISLPSEESQN-----IELIGPFEQVFMEIRC--PDGGD 618
A GLY+F + +RPV+ + + + IG +EQ +++I D D
Sbjct: 1027 DPA--GLYVFYDCGRLMRPVQRLESSVRKDATHLPFPLVFIGTWEQSWLDIAAVPSDPLD 1084
Query: 619 GGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRA 678
+ + E + T ++S+ + P+ +HN SPRN++QC ++KQ+ G +QAL +R
Sbjct: 1085 AVVQLNRKYEYMEQNGTNLISLTSATIPFFEHNCSPRNLFQCGLSKQSSGTQLQALAWRK 1144
Query: 679 DQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRG 738
+ KL+ PQ I RT YG+D+ G NA++A+LAYTGYDM+DA+I+N ++ RG
Sbjct: 1145 EAKLFRTYCPQRYISRTLPMDYYGLDDVNLGVNAVIAILAYTGYDMDDAVIINSTAAQRG 1204
Query: 739 MCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLP------------Y 786
M + + + S G+ D + + ++++GLP +
Sbjct: 1205 MLTAGVTVAKIVTASGKGSDKDDVFVFHNLLSTGERFTAELEANGLPPKRANASLDAFSF 1264
Query: 787 VGQMIHPG-----EPYC--------------SIYDKT---TNSWRTNSRKGSESVFVDYV 824
+PG + YC S+Y+ T WR + KG E +V V
Sbjct: 1265 DRDHKYPGLRDNNDVYCCAKRVERVDPFTNKSVYEYTRHHATKWR-HFDKG-EDAWVQQV 1322
Query: 825 AVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPD 884
+ + S P + FR R P +GDKFSSRHGQKG ++PF+ +G+ PD
Sbjct: 1323 -IPLVYSGPDPTSVLMIFRIPRPPTVGDKFSSRHGQKGTLPLHIRSHNLPFATASGITPD 1381
Query: 885 LIINPHAFPSRMTIAMLLESVAAK 908
+IINPHAFPSRMT+ M+LE + AK
Sbjct: 1382 VIINPHAFPSRMTVGMVLEIMTAK 1405
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/131 (36%), Positives = 74/131 (56%), Gaps = 6/131 (4%)
Query: 66 RERF--NFGQFPVMLKTRRCHLQGADSQKLVSLK--EEAAEMGGYFILNGLERVFRSVIL 121
+E+F NF FP M+K RC L+ D+ +L + EE E+GGYFI+NG ER+ R++++
Sbjct: 463 KEQFWVNFASFPEMVKGARCALRNVDA-RLDHFRALEEQKEVGGYFIMNGGERILRALLM 521
Query: 122 PKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKE 181
+ N P+++ R F + ++ KAVVIRC R + YY G V F +
Sbjct: 522 QRCNVPINIYREKFVTQGPHFSAKAVVIRCKRPSGLTAQNYFYYTTQGEVIFSF-ARKVV 580
Query: 182 YLLPVGIVLKA 192
+ LPV ++L A
Sbjct: 581 WHLPVPLLLSA 591
>gi|70952223|ref|XP_745294.1| DNA-directed RNA polymerase, beta subunit [Plasmodium chabaudi
chabaudi]
gi|56525572|emb|CAH82099.1| DNA-directed RNA polymerase, beta subunit, putative [Plasmodium
chabaudi chabaudi]
Length = 1218
Score = 253 bits (645), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 141/287 (49%), Positives = 181/287 (63%), Gaps = 14/287 (4%)
Query: 631 EIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQT 690
E+ T LS +A+LTP+SDHNQSPRN+YQCQM KQTMG + + K+Y + TPQ
Sbjct: 915 ELKQTSFLSFLASLTPFSDHNQSPRNIYQCQMLKQTMGIQSLNMFYTFTNKIYRMITPQF 974
Query: 691 PIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETI 750
P+V T Y YGID +P+GTNA+VA+LAYTGYDMEDA+I+NK+S DRGM IY+TE I
Sbjct: 975 PLVVTRDYELYGIDNFPSGTNAVVAILAYTGYDMEDALIINKASSDRGMFRTHIYKTEII 1034
Query: 751 DL-----SDD---GNKVD-RGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIY 801
DL S D GN + L +N + ++ DGLP V Q + P S
Sbjct: 1035 DLYKKTDSPDFVLGNNIRYTTNSLSSKNNMREHKGKFLNKDGLPCVNQKMVENNPLYSYI 1094
Query: 802 DKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQK 861
+K N T +VD V+ + ++S N Q A IR R TR P++GDKF+SRHGQK
Sbjct: 1095 NK-KNELTTYEIFNYGDYYVDCVS-NSQSSNN--QVAIIRLRTTRPPLVGDKFASRHGQK 1150
Query: 862 GVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
GV S+L+P DMPFS +G+ PD+I NPH PSRMTI ML+ES+ K
Sbjct: 1151 GVVSRLFPHEDMPFSE-SGIVPDVIFNPHGIPSRMTIGMLIESICGK 1196
Score = 114 bits (284), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 66/217 (30%), Positives = 112/217 (51%), Gaps = 12/217 (5%)
Query: 381 SIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRK 440
S+ + KTG + T + QQR+G+ + A+ +N LR ++ FRA+HRG+ F ++ S RK
Sbjct: 551 SVSYLFKTGNI-TSDHIHYQQRSGWAILADEINNLRLLTNFRAIHRGSFFQDVKVLSPRK 609
Query: 441 LLPESWGFLCPVHTPDGEPCGLLNHMTSTC---RVASYYDSRGNIRDFSKMRTSILRVLI 497
LL ESWGF+CPVHTPDG PCGLLNH++ C VAS + NI KM + + I
Sbjct: 610 LLGESWGFICPVHTPDGSPCGLLNHLSQYCCIYNVASNEPHKFNI----KMYLKKIGINI 665
Query: 498 GVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLE 557
+ + + ++ + +++D + I ++ ++ V L+ K + E
Sbjct: 666 NLDETSGIHTIYEN---QTIPIIVDSVPITYISENDFKRTVYKLKYAKNHNLYNLKSHFE 722
Query: 558 VGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEE 594
+ L+ + + T + +RP+ N+ + E
Sbjct: 723 I-IAHLNEPSMMDSIIINTCTGRIIRPLLNLKMKCIE 758
Score = 57.0 bits (136), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 72/347 (20%), Positives = 151/347 (43%), Gaps = 48/347 (13%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
C+ + +Y G+++ + QY + +V+ + G P+M+ + C+L+ + ++L
Sbjct: 144 CKLSCKTYEGEVLMVINKQY---KNEIVQTTVSTGYIPIMVLSDLCNLKNLNKKELTQKG 200
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
E+ + +GG+FI++G ++ R VI PK N + + V I C+ D S
Sbjct: 201 EDESLLGGFFIISGNLKIIRYVICPKYNTILLN------------EENKVHINCLLSDNS 248
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
L Y N QG +P +++ L + ++ N++ Y K K
Sbjct: 249 VFINSLVYSKNYEYGYLSRFQGSFIHMPFHVLILCL---SPIKKKNYI-------YNKIK 298
Query: 218 GAVGSPLVSERVKIILAEVQDLSLTTRLQ--------CLQHIGEH--FQPVIDGLQSESY 267
+ + +K I + + L + L++IG++ I +
Sbjct: 299 LGIKN---ENAIKYIENYINSIFLKNNINEKEVFEKYNLKYIGKYANVSRTIFRYYEGNN 355
Query: 268 YAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKL----FSLVDHTSVSDNPDSLQNQEILL 323
Y +++I+ + HL N++KF + M ++L F L++ + N DSL+ +
Sbjct: 356 YKKGKSIIKYCVLPHLQSNSEKFETVCLMFKQLVLSKFKLIN----TVNKDSLEYHSVTT 411
Query: 324 PGHLITIYLKEKLEDWLRKGKKLIQDEIENN-GKKFDFFNLANIKKV 369
L++ LKE++ + + + + + KK++ F L N+K++
Sbjct: 412 CSGLLSNILKERILNCFYRMQMVYARSLHKFLEKKYEMFKL-NVKQI 457
>gi|398016410|ref|XP_003861393.1| RNA polymerase I second largest subunit, putative [Leishmania
donovani]
gi|322499619|emb|CBZ34693.1| RNA polymerase I second largest subunit, putative [Leishmania
donovani]
Length = 1616
Score = 253 bits (645), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 177/564 (31%), Positives = 283/564 (50%), Gaps = 66/564 (11%)
Query: 401 QRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPC 460
Q +G+ V AE LNF RF R VHRG + A +R++ VRK E++GF+C V +PDGE C
Sbjct: 852 QTSGWVVMAEHLNFYRFFEQLRCVHRGKTIADMRSSEVRKYPCEAYGFICMVQSPDGEDC 911
Query: 461 GLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVL 520
G+LNH++ + ++ D+ +++R + + + GV + +V V V
Sbjct: 912 GVLNHLSLSTISSNSPDAAMT----AQLREIVCKAVPGVRSRATHSTVVDQLCETV-PVW 966
Query: 521 LDGRVVGVIPSSEIEKVVAHLR-------RLKVSAASVIP-------DDLEVGYV-PLSL 565
++G ++G + ++ + A LR R +V ++ LEV YV P +
Sbjct: 967 MEGELLGYLSPADAVEAAARLRQRKALTLRSQVHVTGIVRRKDASPLHTLEVVYVAPKNK 1026
Query: 566 GGAYPGLYLFTSPPKFVRPVRNISLPSEESQN-----IELIGPFEQVFMEIRC--PDGGD 618
A GLY+F + +RPV+ + + + IG +EQ +++I D D
Sbjct: 1027 DPA--GLYVFFDCGRLMRPVQRLESSVRKDATHLPFPLVFIGTWEQSWLDIAAVPSDPLD 1084
Query: 619 GGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRA 678
+ + E + T ++S+ + P+ +HN SPRN++QC ++KQ+ G +QAL +R
Sbjct: 1085 AVVQLNRKYEYMEQNGTNLISLTSATIPFFEHNCSPRNLFQCGLSKQSSGTQLQALAWRK 1144
Query: 679 DQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRG 738
+ KL+ PQ I RT YG+D+ G NA++A+LAYTGYDM+DA+I+N ++ RG
Sbjct: 1145 EAKLFRTYCPQRYISRTLPMDYYGLDDVNLGVNAVIAILAYTGYDMDDAVIINSTAAQRG 1204
Query: 739 MCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLP------------Y 786
M + + + S G+ D + + ++++GLP +
Sbjct: 1205 MLTAGVTVAKIVTASGKGSDKDDVFVFHNLLSTGERFTAELEANGLPPKRANASLDAFSF 1264
Query: 787 VGQMIHPG-----EPYC--------------SIYDKT---TNSWRTNSRKGSESVFVDYV 824
+PG + YC S+Y+ T WR + KG E +V V
Sbjct: 1265 DRDHKYPGLRDNNDVYCCAKRVERVDPFTNKSVYEYTRHHATKWR-HFDKG-EDAWVQQV 1322
Query: 825 AVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPD 884
+ + S P + FR R P +GDKFSSRHGQKG ++PF+ +G+ PD
Sbjct: 1323 -IPLVYSGPDPTSVLMIFRIPRPPTVGDKFSSRHGQKGTLPLHIRSHNLPFATASGITPD 1381
Query: 885 LIINPHAFPSRMTIAMLLESVAAK 908
+IINPHAFPSRMT+ M+LE + AK
Sbjct: 1382 VIINPHAFPSRMTVGMVLEIMTAK 1405
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/131 (36%), Positives = 74/131 (56%), Gaps = 6/131 (4%)
Query: 66 RERF--NFGQFPVMLKTRRCHLQGADSQKLVSLK--EEAAEMGGYFILNGLERVFRSVIL 121
+E+F NF FP M+K RC L+ D+ +L + EE E+GGYFI+NG ER+ R++++
Sbjct: 463 KEQFWVNFASFPEMVKGARCALRNVDA-RLDHFRALEEQKEVGGYFIMNGGERILRALLM 521
Query: 122 PKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKE 181
+ N P+++ R F + ++ KAVVIRC R + YY G V F +
Sbjct: 522 QRCNVPINIYREKFVTQGPHFSAKAVVIRCKRPSGLTAQNYFYYTTQGEVIFSF-ARKVV 580
Query: 182 YLLPVGIVLKA 192
+ LPV ++L A
Sbjct: 581 WHLPVPLLLSA 591
>gi|255083755|ref|XP_002508452.1| predicted protein [Micromonas sp. RCC299]
gi|226523729|gb|ACO69710.1| predicted protein [Micromonas sp. RCC299]
Length = 1159
Score = 252 bits (644), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 259/1012 (25%), Positives = 415/1012 (41%), Gaps = 198/1012 (19%)
Query: 9 FEPLRELVRHHIESFDYMLDEGLSEMF--------------------------------- 35
F +R LVR HI+SF+Y+++E + ++
Sbjct: 47 FLKVRGLVRQHIDSFNYLINEEIKKIIAAKANEKVTCDTDPNFYLKYTNIQVGKPSVEED 106
Query: 36 --------DHCRQAKISYTGKLMADVEFQYLDAGSPVVRER-------FNFGQFPVMLKT 80
CR ++Y + DVE+ G +V G+ P+ML++
Sbjct: 107 FIVEEITPQQCRLRDMTYAAPVTVDVEYT---RGKEIVTNTSKNGVGGVTIGRIPLMLRS 163
Query: 81 RRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRRE 140
RC L G ++L L E + GGYF++ G E+V +++ +Q +S R +
Sbjct: 164 SRCILTGKSEEELARLGECPLDPGGYFVVKGTEKV---ILIQEQ---LSKNRIIIDIDNK 217
Query: 141 GYTDKAVVIRC-VRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYL--------LPVGIVLK 191
G +V RK ++++ +K GK YL +P+ + LK
Sbjct: 218 GEVGASVTSSTHERKSKTNIVVK---------------HGKLYLRHNTFTDEIPIMVALK 262
Query: 192 ALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHI 251
A+ +D E+ + A S L+ L E L++ T+ Q L++
Sbjct: 263 AMGCESDQEVVQMV---------GPDTAYASLLLPS-----LLECSALAIFTQQQALEYC 308
Query: 252 GEHFQPVIDGLQS---ESYYAVAETVIRDYIFVHLN----DNNDKFNLLIFMLQK-LFSL 303
G + + S S A ++ + H+ D K + M+++ L ++
Sbjct: 309 GGKVRMATRMMYSRNKRSKVDEARDILAGVVLAHVPVPAYDFRQKCVYVAIMIRRILHAM 368
Query: 304 VDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLE----DWLRKGKKLIQDEIENNGKKFD 359
VD T V D+ D N+ + L G L+ + ++ + D R+ ++ N +FD
Sbjct: 369 VDPTQV-DDKDYYGNKRLELAGQLLALLFEDCFKRLNADLKRQADAVLSK--SNRATQFD 425
Query: 360 FFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFIS 419
I++ N + +S +K R+ +R G T RL+F+ +
Sbjct: 426 IIKC--IRQDTLSNGLEHAISSGNWTVKRFRM---------ERKGVTQVLSRLSFISALG 474
Query: 420 FFRAVHRGASFAGLRTTS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDS 478
+ + F R S R L P WG LCP TP+GE CGL+ ++ V + D
Sbjct: 475 MMTRIT--SQFEKTRKVSGPRALQPSQWGMLCPSDTPEGESCGLVKNLALMTHVTT-DDE 531
Query: 479 RGNIRDFSK-MRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKV 537
+R + + L +L+G + P V L+G ++GV
Sbjct: 532 EEPLRSLAHVLGVEPLLLLVGQEL----------HSPGSALVFLNGHILGV--------- 572
Query: 538 VAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRP----------VRN 587
H + ++ + +S+ +Y+ + + RP V+
Sbjct: 573 --HQDPARFASDFRLLRRRGRVGEFVSVHTTTGNVYIASDGGRVCRPLLIVENGELLVKQ 630
Query: 588 ISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHE-EIHPT---------GM 637
+ L + ++ Q F+E D + N++ A +E EI P +
Sbjct: 631 VHLDALKAGRWTFNDFLTQGFVEYL--DVNE--ENNSYIALYESEITPETTHLEIEPFTL 686
Query: 638 LSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNT 697
L V A + PY HNQSPRN YQC M KQ MG R D +Y L PQ PIV+T T
Sbjct: 687 LGVCAGIIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLNRMDTLMYLLVYPQKPIVKTKT 746
Query: 698 YTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGN 757
G D G NA VAV++Y+GYD+EDA+++N++S+DRG + + + N
Sbjct: 747 IELIGYDRLGAGQNATVAVMSYSGYDIEDAIVMNRASLDRGFGRCIVLRKYGCTIKKYSN 806
Query: 758 KV-DRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYC------------------ 798
+ DR H ++D DG+ VG+ I PG+ Y
Sbjct: 807 RTQDRIVPPTPAQTGPNGRHRLLDKDGIAAVGEKISPGDVYINKQSPGNTRDPLPNPQAM 866
Query: 799 --SIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSS 856
S Y T S++ ES VD V + + K + RHTR P +GDKFSS
Sbjct: 867 PDSFYRPTAQSYKGPQ---GESCVVDKVMLTTSDEGQFNVKCLV--RHTRRPEVGDKFSS 921
Query: 857 RHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
RHGQKGVC + D+PFS G+ PDLI+NPH FPSRMT+ ++E + K
Sbjct: 922 RHGQKGVCGTIVEQSDLPFSE-RGICPDLIMNPHGFPSRMTVGKMIELLGGK 972
>gi|241614087|ref|XP_002407492.1| RNA polymerase III, putative [Ixodes scapularis]
gi|215502825|gb|EEC12319.1| RNA polymerase III, putative [Ixodes scapularis]
Length = 1141
Score = 252 bits (644), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 260/1006 (25%), Positives = 418/1006 (41%), Gaps = 193/1006 (19%)
Query: 9 FEPLRELVRHHIESFDYMLDEGLSEMF--------------------------------- 35
F ++ LVRHHI+SF++ ++ + E+
Sbjct: 40 FLSVQGLVRHHIDSFNHFINVEIKEIVRANEKITSDADPQFYLKYLDIHIGKPDVEENCV 99
Query: 36 -------DHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGA 88
CR ++Y+ + D+E Y VVR F G+ P+ML++ C L
Sbjct: 100 ASKATTPHECRLRDMTYSAPITVDIE--YTRGTQRVVRGDFPIGRMPIMLRSANCILADK 157
Query: 89 DSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVV 148
++ + E + GGYF++NG+ERV +++ +Q M+ DR+ G +
Sbjct: 158 THFQMSQMNECPYDPGGYFVVNGVERV---ILMQEQLSKNRMIVEE--DRKGGLMCQVTS 212
Query: 149 IRCVRKDQSSVTLK--LYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLT 206
RK +++V K YYL + +P+ IV K + +D EI +
Sbjct: 213 STHERKSRTNVGTKHGRYYLKHNCFTED---------IPIAIVFKGMGLESDQEIVQMI- 262
Query: 207 CCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIG---EHFQPVIDGLQ 263
G+ S L + L E + T+ Q L+++G +H + G
Sbjct: 263 -----------GSADSILST--FAPSLEECHRSQVFTQTQALRYLGGKLKHRRMFFAGGP 309
Query: 264 SESYYAVAETVIRDYIFVHLNDNNDKFNL----LIFMLQKLFSLVDHTSVSDNPDSLQNQ 319
++ A ++ + H+ + F + L M++++ + + D+ D N+
Sbjct: 310 RKTPVDDARDILATTVLAHVPVEHYNFRVKAMYLALMIRRVIEAQTNREMIDDRDYYGNK 369
Query: 320 EILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIG 379
+ L G L+++ L E L KL+ D+ + F + +++ + I
Sbjct: 370 RLELAGSLLSL-LFEDLFKRFNTELKLVADKTIPKVRATQFDVVKYVRQDL-------IT 421
Query: 380 TSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-V 438
+ + + TG + +R G T RL+++ + V+ + F R S
Sbjct: 422 NGLVSSISTGNWTVKRF--KMERIGVTQVLTRLSYISALGMMTRVN--SQFEKTRKVSGP 477
Query: 439 RKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIG 498
R L P +G LCP TP+GE CGL+ ++ + + + I+R+L+
Sbjct: 478 RSLQPSQFGMLCPSDTPEGEACGLVKNLALMTHITTDLEE-----------APIVRLLLN 526
Query: 499 VGMIP-SLPKLVKSGPPAVLSVLLDGRVVGVIPSSEI---------------EKVVAHLR 542
+G+ L + P+V V L+G ++GV+ + E V H
Sbjct: 527 LGVEDVHLLNGEELSDPSVYLVFLNGGIIGVVHNHARLLRTLRLLRRSGHLSEFVSLHSS 586
Query: 543 RLKVSAASVIPDDLEVGYVPLSLGGAYP------------GLYLFTSPPKFVRP--VRNI 588
R++ ++ D + + + G P GL F FVR V +
Sbjct: 587 RVQ-RCVNISADGGRMCRPYIVVEGGRPLVTAAHLEDLTRGLLFFND---FVRRGLVEFL 642
Query: 589 SLPSEESQNIEL----IGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANL 644
+ E I L IGP E +EI P +L V A L
Sbjct: 643 DVNEENDSYIALRECDIGP-ETTHLEI---------------------EPFTLLGVCAGL 680
Query: 645 TPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGID 704
PY HNQSPRN YQC M KQ MG + R D LY L P P+V+T T +
Sbjct: 681 IPYPHHNQSPRNTYQCAMGKQAMGTIALNQRNRIDSLLYLLVYPHRPMVKTKTIELIHFE 740
Query: 705 EYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKV-DRGQ 763
+ P G NA VAV++Y+GYD+EDA+++N+SS+DRG Q+ + + L N+ DR
Sbjct: 741 DIPAGQNATVAVMSYSGYDIEDAIVMNRSSIDRGFGRCQVCRHQKCTLKRYANQSHDRVM 800
Query: 764 KLFRRNKDAKSL--HSVIDSDGLPYVGQMI-------------------HPGEPYCSIYD 802
+ K + H +D+DG+ G I PG+P +
Sbjct: 801 GPLVDSTTMKPIWKHEPLDTDGIARPGDRIENRQVLVNKWVPSASSVGAQPGQPSPPEHK 860
Query: 803 KTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKG 862
+ ++ KG E V V+ V + + K + R TR P IGDKFSSRHGQKG
Sbjct: 861 EVPVAY-----KGLEPVHVEKVLISSNTEEAFLIK--LLLRQTRRPEIGDKFSSRHGQKG 913
Query: 863 VCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
V + DMPFS G+ PDLI+NPH FPSRMT+ L+E +A K
Sbjct: 914 VVGLIAQQEDMPFSD-QGVCPDLIMNPHGFPSRMTVGKLIELLAGK 958
>gi|324500827|gb|ADY40377.1| DNA-directed RNA polymerase II subunit RPB2 [Ascaris suum]
Length = 1173
Score = 252 bits (643), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 242/898 (26%), Positives = 393/898 (43%), Gaps = 114/898 (12%)
Query: 67 ERFNFGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNY 126
E+ G+ P+ML++ C L + L L E + GGYFI+NG E+V +I ++
Sbjct: 148 EKVFVGKIPIMLRSSYCMLSNMSDRDLTELNECPLDPGGYFIINGSEKV---LIAQEKMA 204
Query: 127 PMSMVRSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLL---NGSV-------RLGFW 176
++ S +D + Y + R ++ S T L+ + GS R+
Sbjct: 205 TNTVYVFSMKDGKYAYKTEC---RSCLENSSRPTSTLWVNMMARGGSTKKSAMGQRIIAI 261
Query: 177 LQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEV 236
L + +P+ IV +AL +D +I H+ +++ P + E VK L E
Sbjct: 262 LPYIKQEIPIMIVFRALGFVSDHDILEHIIYDFED-----------PEMMEMVKPSLDEA 310
Query: 237 QDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDNN----DKFNL 292
+ + L IG + G+ E A+ +++ + H+ ++ K
Sbjct: 311 --FVIQEQNVALNFIGA--RGAKPGVTKEQRIKYAKEILQKEMLPHVGISDFCETKKAYF 366
Query: 293 LIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIE 352
+ +M+ +L D+ D + N+ + L G L+ + ++ L++ + Q I
Sbjct: 367 IGYMVHRLLLAALGRRELDDRDHIGNKRLDLAGPLLAFLFRALFKNLLKEVRLTAQKYIN 426
Query: 353 NNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERL 412
NG DF A +K + I + L TG Q Q RAG + RL
Sbjct: 427 KNG---DFILDACVK-------TSTITRGLAYSLATGNWGDQKKAH-QSRAGVSQVLNRL 475
Query: 413 NFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRV 472
+ +S R + G + R+L WG +CP TP+G+ GL+ ++
Sbjct: 476 TYTATLSHLRRCNSPIGREG-KLAKPRQLHNTQWGMVCPAETPEGQAVGLVKNLALMA-- 532
Query: 473 ASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSS 532
Y S G++ + IL L M +L ++ S + ++G VG+
Sbjct: 533 ---YISVGSLPE------PILEFLEEWSM-ENLEEVAPSAIADATKIFVNGAWVGI--HR 580
Query: 533 EIEKVVAHLRRLK------VSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVR 586
+ E++++ L++L+ VS S++ D + + G L K V +
Sbjct: 581 DPEQLMSTLKKLRREMDIIVSEVSMVRDIRDREIRIYTDAGRVCRPLLIVENQKLVLKKK 640
Query: 587 NISLPSEESQN-----------IELIGPFEQ--VFMEIRCPDGGDGGRRNAFPATHEEIH 633
+I + + N +ELI E+ V + + D GG + + TH EIH
Sbjct: 641 HIDQLKDTNDNYAWSDLVAGGVVELIDAMEEETVMLAMMPEDLKAGGYCDTY--THCEIH 698
Query: 634 PTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIV 693
P +L V A++ P+ DHNQSPRN YQ M KQ MG R D + L PQ P+V
Sbjct: 699 PAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYTTNFHVRMDTLAHVLYYPQKPLV 758
Query: 694 RTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLS 753
T + +E P G NAIVA+L+YTGY+ ED++I+N+S +DRG+ Y++
Sbjct: 759 TTRSMEYLRFNELPAGINAIVAILSYTGYNQEDSVIMNQSGIDRGLFRSVFYRSYR---D 815
Query: 754 DDGNKVDRGQKLFRRNKDAK------SLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTT-- 805
+ N + ++L + K SL+ +D DG+ G + + I KT
Sbjct: 816 QEANLDNANEELIEKPTRDKCSGMRHSLYDKLDEDGIISPGMRVSGDD---VIIGKTISL 872
Query: 806 ----NSWRTNSRK-----------GSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPII 850
+ N++K SE+ VD V + + N + IR R R P I
Sbjct: 873 PDVEDDLEANTKKYTKRDASTFLRSSETGIVDQVMLTLNTDGN--KFVKIRVRSVRLPQI 930
Query: 851 GDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
GDKF+SRHGQKG ++ DMPF+ G+ PD+IINPHA PSRMTI L+E + K
Sbjct: 931 GDKFASRHGQKGTMGIMYRQEDMPFTN-EGITPDIIINPHAVPSRMTIGHLIECLQGK 987
>gi|307178142|gb|EFN66950.1| DNA-directed RNA polymerase III subunit RPC2 [Camponotus
floridanus]
Length = 1120
Score = 251 bits (642), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 239/933 (25%), Positives = 404/933 (43%), Gaps = 142/933 (15%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR ++Y+ ++ D+E ++ + G+ PVML++ C L +L L
Sbjct: 85 CRLRDLNYSAPIIVDIE--HIRNNQRIRNTNMVIGRMPVMLRSSNCVLTNKSHYELAKLN 142
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRC-----V 152
E + GGYF++NG E+V +++ +Q MVR+ +G K ++ C
Sbjct: 143 ECPHDPGGYFVINGQEKV---ILIQEQ-----MVRNRIIVEEDG---KEIIASCNSFTHE 191
Query: 153 RKDQSSVTLKL--YYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYD 210
+K ++S+ K YY+ N + + +V KA+ +D++I +
Sbjct: 192 KKTKTSIVGKAGKYYIRNNMFQDDIL---------ITVVFKAMGIVSDIDIIQMIG--EK 240
Query: 211 EKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAV 270
EKY ++ + Q+L + + Q L+++ + + ++V
Sbjct: 241 EKY------------LDKFIACIENCQELGIFSEKQALKYLNNKRRQTRSAQSYAAKFSV 288
Query: 271 --------AETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEIL 322
A V+ + N +L + M++++ ++ DN D N+ +
Sbjct: 289 IDEMKDLLAANVLSHVPVIDFNFRTKALHLAL-MIRRVIDAQSDRNLIDNKDYYGNKRLE 347
Query: 323 LPGHLITIYLKE--KLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGT 380
L G L+ + ++ K +W K+I D+ K F +I K + K+ I
Sbjct: 348 LAGSLLALMFEDLFKRFNW---ELKMIADKNIPKVKAAPF----DITKYIRKDT---ITN 397
Query: 381 SIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VR 439
+ + +G + +R G T RL+++ + VH + F R S R
Sbjct: 398 GLAFAISSGNWTIKRFR--MERHGVTQVLSRLSYISALGMMTRVH--SQFEKTRKISGPR 453
Query: 440 KLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGV 499
L WG LCP TP+GE CGL+ ++ + + I+ + I+ +G
Sbjct: 454 ALHGSQWGMLCPNDTPEGEACGLVKNLALMAHITTEMPEGPFIKLMRNLGVQIIYTCVGG 513
Query: 500 GMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVG 559
+I + V ++G + G+I S + ++V R L+ +G
Sbjct: 514 ELIKK----------DIYVVFVNGNMAGIIKESLVLQLVHQFRLLR-----------RMG 552
Query: 560 Y----VPLSLGGAYPGLYLFTSPPKFVRPVRNIS----LPSEESQN-------------- 597
Y V +S+ + + + + RP+ + L E+ N
Sbjct: 553 YIDCFVSISVQRRHKCVQVSCDGGRLCRPLIIVKDGKPLIEEKHMNYLEMNLWTFNDFVH 612
Query: 598 ---IELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSP 654
IE + E+ I C + + TH EI +L V A L PY +HNQSP
Sbjct: 613 AGLIEYLDVNEENDSLIACKESEIIAQ-----TTHLEIAEFTILGVCAGLIPYPNHNQSP 667
Query: 655 RNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIV 714
RN YQC M KQ +G + R D +Y+L PQ PIV+T D+ P G NA+V
Sbjct: 668 RNTYQCAMGKQAIGAIGYNQRNRIDTLMYNLVYPQRPIVKTRQIELINFDKLPAGENALV 727
Query: 715 AVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDR---GQKLFRRNKD 771
AV++++GYD+EDA+ILNK+S+DRG +Y+ + + N+V GQ L K
Sbjct: 728 AVMSFSGYDIEDALILNKASIDRGYGRCLVYRNSKCIIKNHPNQVMDVILGQSLDAITKK 787
Query: 772 AKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKT--------------TNSWRTN--SRKG 815
H ++++DG+ G M+ + + T + +R+ S KG
Sbjct: 788 PIPKHDILENDGIAAAGVMVENKKVMVNKAVSTRSGNLGPSRSDNFQSQDYRSAEVSYKG 847
Query: 816 SESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPF 875
S +++ V V N++N + R TR P IGDKFSSRHGQKGV + D+PF
Sbjct: 848 SVPAYIEKVMVS-SNAEN-AFLIKLLLRQTRRPEIGDKFSSRHGQKGVVGLIVDQEDLPF 905
Query: 876 SGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
+ G+ PD+I+NPH FPSRMT+ L+E +A K
Sbjct: 906 NDY-GICPDVIMNPHGFPSRMTVGKLIEVLAGK 937
>gi|332796432|ref|YP_004457932.1| RNA polymerase subunit B [Acidianus hospitalis W1]
gi|332694167|gb|AEE93634.1| RNA polymerase subunit B [Acidianus hospitalis W1]
Length = 1123
Score = 251 bits (642), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 250/987 (25%), Positives = 425/987 (43%), Gaps = 168/987 (17%)
Query: 13 RELVRHHIESFDYMLDEGLSEMFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRE----- 67
R LVR H++SF+ + L E+ D + + G ++ + G P VRE
Sbjct: 18 RGLVRQHLDSFNDFIKNKLQEIIDEQGEIETEIPG---LKIKLGKIRVGKPRVREADRGD 74
Query: 68 -----------------------------------RFNFGQFPVMLKTRRCHLQGADSQK 92
G P+MLK+ ++K
Sbjct: 75 REITPMEARLRNLTYAAPIYLTMIPVENNIEGEPTEVYIGDLPIMLKSVADPTADLPAEK 134
Query: 93 LVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCV 152
LV + E+ + GGYFI+NG E+V I+ +++ + V T A +I
Sbjct: 135 LVEIGEDPKDPGGYFIINGTEKV----IVTQEDLATNRVLVDEGKSGSNVTHTAKIISST 190
Query: 153 RKDQSSVTLKLYYLLNGSVRLGF-WLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDE 211
+ +T++ L + ++ + F + G+ +P I+++AL D +I +DE
Sbjct: 191 AGYRVPITIE--RLRDSTIHVSFPAVPGR---IPFAILMRALGLETDRDI--TFAVSFDE 243
Query: 212 KYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVA 271
+ + E ++ + Q S+TT+ L IG V G + E+ A
Sbjct: 244 EIQNE--------------LLPSLEQASSITTQEDALDFIGNR---VAIGQKRENRIERA 286
Query: 272 ETVIRDYIFVHLN----DNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHL 327
E V+ Y HL D K L + + KL L D+ D N+ + L G L
Sbjct: 287 EQVLDKYFLPHLGLTPADRKKKAYYLGYAVSKLIELQLGRREPDDKDHYANKRLKLAGDL 346
Query: 328 ITIYLKEKLEDWLRKGKKLIQ--DEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETM 385
+ + + ++ K L+ ++ + G++ L + E+
Sbjct: 347 FSSLFRVAFKAFV---KDLVYQLEKSKVRGRRLTLNALVRPDIITERI------------ 391
Query: 386 LKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFA-GLRTTSVRKLLPE 444
R A TG + R G + +R N+L +S R V +S A G R L
Sbjct: 392 ----RHAMATGNWVGGRTGVSQLLDRTNWLSMLSHLRRVI--SSLARGQPNFEARDLHGT 445
Query: 445 SWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPS 504
WG +CP TP+G GL+ ++ +++ + + + ++L +G+IP
Sbjct: 446 QWGRMCPFETPEGPNSGLVKNLALLAQISVGINDK-----------IVEKMLYELGVIP- 493
Query: 505 LPKLVK-----SGPPAVLS---VLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDL 556
L +L++ P + + V+L+GR+VG P+ E +A+ R K A I D++
Sbjct: 494 LEELIRKIDEGEDPSSYTNWSKVILNGRLVGYYPNGE---ELANKMREKRRAGE-ISDEI 549
Query: 557 EVGYVPLSLGGAYPGLYLFTSPPKFVRP--VRNISLPSEESQNIELIGPFEQVF------ 608
V ++ + Y +Y+ + + RP V P ++I+ + E F
Sbjct: 550 NVAHI---VTDTYDEVYVNSDSGRVRRPLIVVKDGKPLVTEEDIQRLKKGEITFDTLVKE 606
Query: 609 MEIRCPDGGDGGRRNAFPA----------THEEIHPTGMLSVVANLTPYSDHNQSPRNMY 658
+I D + NA+ A TH EI +L + A++ PY +HNQSPRN Y
Sbjct: 607 GKIEFLDAEE--EENAYIALEPSKVTPEHTHLEIWTPAILGITASIIPYPEHNQSPRNTY 664
Query: 659 QCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLA 718
Q MAKQ +G + R D + + L PQ P+V+T G + P G NAI+AV++
Sbjct: 665 QSAMAKQALGLYASNYQLRTDSRAHFLHYPQKPLVQTRALDIIGYNNRPAGENAILAVMS 724
Query: 719 YTGYDMEDAMILNKSSVDRGMCHGQIY-------------QTETIDLSDDGNKVDRGQKL 765
+TGY+MEDA+I+NKSSV+RGM + Q + I L + G + +G
Sbjct: 725 FTGYNMEDAIIMNKSSVERGMFRSTFFRLYSAEEIKYPGGQEDKIQLPEPGVRGYKGSDY 784
Query: 766 FRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTN----SRKGSESVFV 821
++ + + ++ G + + P + + + + +R G + + V
Sbjct: 785 YKSLDENGIVPPEVEVKGGDVLIGKVSPPRFLQEFKELSPEQAKRDTSVITRHGEKGI-V 843
Query: 822 DYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGM 881
D V + + N + +R R R P +GDKF++RHGQKGV L P DMP++ V G+
Sbjct: 844 DLVLITETSEGN--KLVKVRVRDLRIPELGDKFATRHGQKGVIGMLIPQADMPYT-VKGI 900
Query: 882 RPDLIINPHAFPSRMTIAMLLESVAAK 908
PD+I+NPH+ PSRMT+ ++E++A K
Sbjct: 901 VPDIILNPHSLPSRMTLGQIMEALAGK 927
>gi|198418494|ref|XP_002128916.1| PREDICTED: similar to POLR2B protein [Ciona intestinalis]
Length = 1173
Score = 251 bits (641), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 250/933 (26%), Positives = 407/933 (43%), Gaps = 112/933 (12%)
Query: 34 MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVR---ERFNFGQFPVMLKTRRCHLQGADS 90
M + R ++Y+ L D+ + + V ++ G+ P+ML++ C L G
Sbjct: 109 MPNEARLRNLTYSAPLYVDITKTVVKHEAQPVETQHQKTFIGKIPIMLRSTYCLLSGLTD 168
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
+ L L E + GGYFI+NG E+V +I ++ ++ +D + +T + IR
Sbjct: 169 RDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFKKKDSKYAFTSE---IR 222
Query: 151 CVRKDQSSVTLKLYYLLNGSVRLGFWLQGKE----------YL---LPVGIVLKALVDTN 197
++ S T ++ +N R G ++ Y+ +P+ IV +AL +
Sbjct: 223 SSLENSSRPTSSMW--VNMLARGGQGVKKSAIGQRITAIIPYIRQEIPIIIVFRALGFVS 280
Query: 198 DLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQP 257
D +I H+ +D+ P + E VK L E + + L IG +
Sbjct: 281 DRDILEHIIYDFDD-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGS--RG 325
Query: 258 VIDGLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNP 313
G+ E A +++ + H+ ++ K L +M+ +L S D+
Sbjct: 326 AKPGVTKEKRIKYAREILQKEMLPHVGISDFCETKKAYFLGYMVHRLLSAALGRRELDDR 385
Query: 314 DSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKN 373
D N+ + L G L+ + + L K +L + + GK F+ LA IK
Sbjct: 386 DHYGNKRLDLAGPLLAFLFRGLFRN-LMKEVRLYAQKFIDRGKDFNL-ELA-IK------ 436
Query: 374 PSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGL 433
++ I ++ L TG Q Q RAG + RL + +S R ++ G
Sbjct: 437 -TRIITDGLKYSLATGNWGDQKKAH-QARAGVSQVLNRLTYASTLSHLRRLNSPIGRDG- 493
Query: 434 RTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSIL 493
+ R+L WG +CP TP+G GL+ ++ ++ + IL
Sbjct: 494 KLAKPRQLHNSLWGMICPAETPEGHAVGLVKNLALMAYIS-----------VGSQPSPIL 542
Query: 494 RVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VS 547
L M +L ++ S + ++G VG+ + E+++ LR+L+ VS
Sbjct: 543 EFLEEWSM-ENLEEISPSAIANATKIFVNGCWVGI--HRDPEQLMNTLRKLRRQMDIIVS 599
Query: 548 AASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEE-----------SQ 596
S++ D E + G L K + R+I E+ S
Sbjct: 600 EVSMVRDIREREIRIYTDAGRICRPLLIVENQKLLLKTRHIDQLKEDYNSYSWQDLVASG 659
Query: 597 NIELIGPFEQ--VFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSP 654
+E I P E+ + + + D D G + TH EIHP +L V A++ P+ DHNQSP
Sbjct: 660 VVEYIDPLEEETIMLAMFPEDLQDKGEQYCSTYTHCEIHPAMILGVCASIIPFPDHNQSP 719
Query: 655 RNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIV 714
RN YQ M KQ MG + R D + L PQ P+V T + E P G NAIV
Sbjct: 720 RNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINAIV 779
Query: 715 AVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT----ETIDLSDDGNKVDRGQKLFRRNK 770
A+ YTGY+ ED++I+NKSSVDRG Y++ E D +R ++ F
Sbjct: 780 AISTYTGYNQEDSIIVNKSSVDRGFFRSVFYRSYKDAENKSAYDQEETFERPERSFCTGM 839
Query: 771 DAKSLHSVIDSDGL-----------PYVGQMIHPGEPYCSIYDKTTNSWR----TNSRKG 815
+++ +D DGL +G+ + E + + TT ++ + +
Sbjct: 840 -RHAIYDKLDDDGLVSPGIRVSGDDVVIGKTVMLPENEDEL-EGTTQRFKKRDVSTFLRT 897
Query: 816 SESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPF 875
SE+ VD V + + +++ + IR R R P IGDKF+SRHGQKG C + DMPF
Sbjct: 898 SETGIVDQVMISI--NQDGYKFTKIRVRSVRVPQIGDKFASRHGQKGTCGITYRAEDMPF 955
Query: 876 SGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
+ G++PDLI+NPHA PSRMTI L+E + K
Sbjct: 956 TS-EGVQPDLIVNPHAIPSRMTIGHLIECIQGK 987
>gi|146302818|ref|YP_001190134.1| DNA-directed RNA polymerase subunit B [Metallosphaera sedula DSM
5348]
gi|145701068|gb|ABP94210.1| DNA-directed RNA polymerase, subunit B' / DNA-directed RNA
polymerase, subunit B' [Metallosphaera sedula DSM 5348]
Length = 1124
Score = 251 bits (641), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 251/982 (25%), Positives = 408/982 (41%), Gaps = 157/982 (15%)
Query: 13 RELVRHHIESFDYMLDEGLSEMFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRE----- 67
R LVR H++SF+ + L E+ D + G + + G P VRE
Sbjct: 18 RGLVRQHLDSFNDFIKNKLQEIIDEQGEIITEIPG---LKIRLGKIRVGKPRVREADKGD 74
Query: 68 -----------------------------------RFNFGQFPVMLKTRRCHLQGADSQK 92
+ G P+MLK+ K
Sbjct: 75 KEITPMEARLRNLTYAAPIFLTMTPVENNIEGDPTEVHIGDIPIMLKSIADPTSEFSQDK 134
Query: 93 LVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCV 152
LV + E+ + GGYFI+NG ERV I+ +++ + V + T A +I
Sbjct: 135 LVEIGEDPKDPGGYFIINGSERV----IVTQEDLATNRVLTDVGKAGSNVTHTAKIISST 190
Query: 153 RKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEK 212
+ +T++ L + ++ + F +P I+++AL D +I L D +
Sbjct: 191 SGYRVPITIE--RLKDSTIHVSF--PSAPGRIPFAILMRALGVETDEDI--TLAVSLDPQ 244
Query: 213 YKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAE 272
+ E ++ + Q S++++ L IG V G + E AE
Sbjct: 245 IQNE--------------LLPSLEQASSISSKEDALDFIGNR---VAIGQKREMRIQKAE 287
Query: 273 TVIRDYIFVHLNDNND----KFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLI 328
++ Y H+ N K L F + KL L D+ D N+ + L G L
Sbjct: 288 QILDKYFLPHIGTNPSDRVAKAYYLAFAVSKLIELYLGRREPDDKDHYANKRLKLAGDLF 347
Query: 329 TIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKT 388
+ K ++D + F L KV + + + + +
Sbjct: 348 ASLFRVAF-------KAFVKDLV---------FQLEK-SKVRGRRLAINALVRPDIISER 390
Query: 389 GRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFA-GLRTTSVRKLLPESWG 447
R A TG + R G + +R N+L +S R V +S A G R L WG
Sbjct: 391 IRHALATGNWVGGRTGVSQLLDRTNWLSMLSHLRRVV--SSLARGQPNFEARDLHGTQWG 448
Query: 448 FLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIP--SL 505
+CP TP+G GL+ ++ +++ + + S+ R L +G++P
Sbjct: 449 RMCPFETPEGPNSGLVKNIALLAQISVGINEK-----------SLERTLYNLGVVPIDDA 497
Query: 506 PKLVKSGP------PAVLSVLLDGRVVGVIPSS-EIEKVVAHLRRLKVSAASVIPDDLEV 558
K VKS V+L+GR++G P E+ + + RR + D++ V
Sbjct: 498 IKKVKSEEGQSENYQTWSKVILNGRLIGYYPDGRELAEKIRESRR-----EGELSDEVNV 552
Query: 559 GYVPLSLGGAYPGLYLFTSPPKFVRP--VRNISLPSEESQNIELIGP----FEQVFMEIR 612
Y ++ + +Y+ + + RP V P ++IE + F+ + E +
Sbjct: 553 SY---NITETFNEVYINSDSGRVRRPLIVVKHGKPLVTKEDIENLKKGKITFDTLVKEGK 609
Query: 613 CPDGGDGGRRNAFPA----------THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQM 662
NA+ A TH EI +L + A++ PY +HNQSPRN YQ M
Sbjct: 610 IEFLDAEEEENAYIALEPKDVTKDHTHLEIWAPAILGITASIIPYPEHNQSPRNTYQSAM 669
Query: 663 AKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGY 722
AKQ +G + R D + + L PQ PIV+T G E P G NAI A+++YTGY
Sbjct: 670 AKQALGLYAANYQIRTDTRAHLLHYPQKPIVQTRALEAIGYTERPAGNNAIFALMSYTGY 729
Query: 723 DMEDAMILNKSSVDRGMCHGQIY-------------QTETIDLSDDGNKVDRGQKLFRRN 769
+MEDA+I+NKSSVDRGM + Q + I L + G + +G+ +R
Sbjct: 730 NMEDAVIMNKSSVDRGMFRSTFFRLYSAEEIKYPGGQEDEILLPEPGVRGYKGKDYYRLL 789
Query: 770 KDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSR---KGSESVFVDYVAV 826
+ + +D G + + P + + + + ++ + E VD V V
Sbjct: 790 ESNGIVSPEVDVKGGDVLIGKVSPPRFLQEFKELSPDQAKRDTSIITRHGERGTVDLVLV 849
Query: 827 DMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLI 886
+ N + +R R R P IGDKF++RHGQKGV L P +DMP++ +G+ PD+I
Sbjct: 850 TETSEGN--KLVKVRVRDLRIPEIGDKFATRHGQKGVIGMLIPQVDMPYT-TSGLVPDII 906
Query: 887 INPHAFPSRMTIAMLLESVAAK 908
+NPHA PSRMT+ ++E++A K
Sbjct: 907 LNPHALPSRMTVGQIMEAIAGK 928
>gi|167525657|ref|XP_001747163.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163774458|gb|EDQ88087.1| predicted protein [Monosiga brevicollis MX1]
Length = 1097
Score = 251 bits (640), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 252/975 (25%), Positives = 429/975 (44%), Gaps = 152/975 (15%)
Query: 9 FEPLRELVRHHIESFDYMLDEGLSEMFD-------------------------------- 36
F ++ LVR HIESF++ ++ + ++
Sbjct: 17 FLKMKGLVRQHIESFNHFIEVDIKKILAANAKVTSDNDPNFYVRYLDIRVLPPSINEGFK 76
Query: 37 --------HCRQAKISYTGKLMADVEFQYLDAGSPVVR-ERFNFGQFPVMLKTRRCHLQG 87
CR +Y G ++ D+E++ G +R E G+ P+ML++ C L G
Sbjct: 77 TNNTVTPMQCRLRSATYAGDIVVDLEYR---RGHETLRVENTRIGRMPIMLRSNLCVLNG 133
Query: 88 ADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAV 147
A K E + GGYF+++G E+V +++ +Q +S R + + T
Sbjct: 134 ASHAKQAKYGECPHDPGGYFVVSGTEKV---ILIQEQ---LSKNRIIVEEFKGDLTASVT 187
Query: 148 VIRCVRKDQSSVTLK--LYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHL 205
RK ++++ K +Y+L ++ +P+ +VLKA+ +D EI +
Sbjct: 188 SSSADRKTKTTIIFKNDQFYMLVNTL---------SEAVPLVVVLKAMGVISDQEIMQLI 238
Query: 206 TCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSE 265
++E V P V ER +L++ T+ Q L ++G + + +
Sbjct: 239 GA------EEEAMLVLGPSV-ERCA-------NLNIFTQNQALAYLGSKIKLLRTYGGAR 284
Query: 266 SYYAVAETVIRDYIFVHLNDNNDKFN----LLIFMLQK-LFSLVDHTSVSDNPDSLQNQE 320
+ + ++ + H+ N F L M+++ + S+ D ++D+ D L N+
Sbjct: 285 TKEDMGRDLLSSVVLAHVPCENFDFRAKAVFLSLMVRRVIISMGD--KMTDDRDYLGNKR 342
Query: 321 ILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLAN-IKKVMEKNPSKQIG 379
+ L G L+++ ++ +++ + K+ Q ++ + + F+ N +++ + N +
Sbjct: 343 LELAGSLMSLLFEDTFKNFNAQLKR--QADVNLSKNRVAAFDATNFMREDIITNSLRNAI 400
Query: 380 TSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-V 438
+S +LK ++ +R G T RL+F+ + + + F R S
Sbjct: 401 SSGNWILKRFKM---------ERHGVTSVLSRLSFIASLGMMTRIT--SQFEKTRKVSGP 449
Query: 439 RKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIG 498
R L P WG LCP TP+GE CGL+ ++ V + + ++ + L ++ G
Sbjct: 450 RSLQPSQWGMLCPADTPEGEACGLVKNLALMTHVTNDDEEEPLVKLAYNLGVESLHLING 509
Query: 499 VGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEV 558
+ G + V ++G ++GV I +V + R L+ S + P
Sbjct: 510 E----------EFGRSSTFLVFINGLMLGVTRRPRI--MVRNFRLLRRSG-RISP----- 551
Query: 559 GYVPLSLGGAYPGLYLFTSPPKFVRP----------VR-------NISLPSEESQNIELI 601
+V +SL + +Y+ + + RP VR N+ + + + I +
Sbjct: 552 -FVSISLNKKHRCVYIASDAGRTCRPYIIVENGKSKVRPHHLEELNMGITTFDDFVINGL 610
Query: 602 GPFEQVFMEIRCPDGGDGGRRNAFPA--THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQ 659
+ V E D N A TH EI P +L A L PY +HNQSPRN YQ
Sbjct: 611 VEYLDVNEE---NDSLLALYENNIEADTTHLEIEPFTILGACAGLIPYPNHNQSPRNTYQ 667
Query: 660 CQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAY 719
C M KQ MG + R D LY L P P+V+T T ++ P G N IVAV+++
Sbjct: 668 CAMGKQAMGVIALNYQQRIDTLLYSLVYPMRPVVKTRTIELIDFEKLPAGQNPIVAVMSF 727
Query: 720 TGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSD-DGNKVDRGQKLFRRNK-DAKSLHS 777
+GYD+EDA ++N++S DRG +Y L +GN D + R +AK + +
Sbjct: 728 SGYDIEDATVMNRASFDRGYGRCVVYSKMQTSLKKYNGNLTDIIRPAPRDEAGNAKGIVA 787
Query: 778 VIDSDGLPYVGQ--MIHPGEPY--CSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKN 833
V G P + +++ P + D + R G ++ + D V V N +
Sbjct: 788 V----GQPMYNRDVLVNKQTPIKRGTEIDYASTQVRYKGTVGKDA-YCDQVMVSSNNEDS 842
Query: 834 LPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFP 893
+ K IR R TR P +GDKFSSRHGQKGVC + DMPF+ G+ PD I+NPH FP
Sbjct: 843 MLIK--IRVRSTRIPELGDKFSSRHGQKGVCGLIVNQEDMPFND-AGVCPDKIMNPHGFP 899
Query: 894 SRMTIAMLLESVAAK 908
SRMT+ L+E AK
Sbjct: 900 SRMTVGKLMEFCGAK 914
>gi|380024797|ref|XP_003696177.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB2-like [Apis florea]
Length = 1175
Score = 251 bits (640), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 252/931 (27%), Positives = 403/931 (43%), Gaps = 106/931 (11%)
Query: 34 MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVR---ERFNFGQFPVMLKTRRCHLQGADS 90
M + R ++Y+ L D+ + G + ++ G+ P+ML+++ C L G
Sbjct: 109 MPNEARLXNLTYSAPLYVDITKTIVKDGEDPIETQHQKTFIGKIPIMLRSKYCLLAGLSD 168
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
+ L L E + GGYFI+NG E+V +I ++ ++ S +D + Y K+ +
Sbjct: 169 RDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFSMKDGKYAY--KSEIRS 223
Query: 151 CVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
C+ + + TL + + + G+ + +P+ IV +AL D +
Sbjct: 224 CLEHSSRPTSTLWINMMAKSGASIKKSAIGQRIIAIIPYIKQEIPIMIVFRALGFVADRD 283
Query: 201 IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
I H+ +D+ P + E VK L E + + L IG +
Sbjct: 284 ILEHIIYDFDD-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGT--RGARP 328
Query: 261 GLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
G+ E A +++ + H+ ++ K L +M+ +L S D+ D
Sbjct: 329 GVTKEKRIKYAREILQKEMLPHVGISDFCETKKAYFLGYMVHRLLSASLGRRELDDRDHY 388
Query: 317 QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
N+ + L G L+ + ++ L K +L + + GK F+ LA IK +K
Sbjct: 389 GNKRLDLAGPLLAFLFRGLFKN-LMKEVRLYAQKFIDRGKDFNL-ELA-IK-------TK 438
Query: 377 QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
I + L TG Q Q RAG + RL F +S R V+ G +
Sbjct: 439 IITDGLRYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRVNSPIGRDG-KLA 496
Query: 437 SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
R+L WG LCP TP+G GL+ ++ ++ + IL L
Sbjct: 497 KPRQLHNTLWGMLCPAETPEGAAVGLVKNLALMAYIS-----------VGSQPSPILEFL 545
Query: 497 IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAAS 550
M +L ++ S + ++G VG+ + ++++A LR+L+ VS S
Sbjct: 546 EEWSM-ENLEEIAPSAIADATKIFVNGCWVGI--HRDPDQLMATLRKLRRQMDIIVSEVS 602
Query: 551 VIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN----IELIGPF-- 604
+I D + + G L + R+I + E N EL+G
Sbjct: 603 MIRDIRDREIRIYTDAGRISRPLLIVEGQNLLLKKRHIDMLKERDYNNDGWQELVGSGVV 662
Query: 605 -------EQVFMEIRCPDGGDGGRRNAFPAT--HEEIHPTGMLSVVANLTPYSDHNQSPR 655
E+ M P+ + A+ T H EIHP +L V A++ P+ DHNQSPR
Sbjct: 663 EYIDTLEEETVMIAMSPEDLRQEKEYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPR 722
Query: 656 NMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVA 715
N YQ M KQ MG + R D + L P P+V T + E P G N+IVA
Sbjct: 723 NTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVA 782
Query: 716 VLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDD-GNKVDRGQKLFRRNKDA-- 772
+L YTGY+ ED++ILN S+V+RG Y++ S G++ ++ +K R+
Sbjct: 783 ILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDSESKRIGDQEEQFEKPTRQTCQGMR 842
Query: 773 KSLHSVIDSDGL-----------PYVGQMIHPGEPYCSIYDKTTNSWRTNSR----KGSE 817
+++ +D DG+ +G+ I E + D TT + + SE
Sbjct: 843 NAIYDKLDDDGIIAPGIRVSGDDVVIGKTITLPEADDEL-DSTTKRFTKRDASTFLRNSE 901
Query: 818 SVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSG 877
+ VD V + + NS+ + IR R R P IGDKF+SRHGQKG C + DMPFS
Sbjct: 902 TGIVDQVMLTL-NSEGY-KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFS- 958
Query: 878 VTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
G+ PD+IINPHA PSRMTI L+E + K
Sbjct: 959 CEGLTPDIIINPHAIPSRMTIGHLIECIQGK 989
>gi|281207896|gb|EFA82075.1| RNA polymerase III [Polysphondylium pallidum PN500]
Length = 1139
Score = 251 bits (640), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 246/944 (26%), Positives = 404/944 (42%), Gaps = 151/944 (15%)
Query: 29 EGLSEMFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGA 88
E +S CR ++Y+ + ++E Y+ V R+ G+ P+ML++ C L
Sbjct: 102 ESVSMTPQKCRLRDMTYSAPITVNLE--YVRGKQIVGRKNVVIGRIPIMLRSSNCVLTNK 159
Query: 89 DSQKLVSLKEEAAEMGGYFILNGLERVF---------RSVI-LPKQNYPMSMVRSSFRDR 138
++L +L E + GGYFI+ G E+V R +I + P S V SS +
Sbjct: 160 SHEQLANLGECPLDPGGYFIVRGNEKVILNHEQLSKNRIIIETDAKGVPCSTVTSSTHE- 218
Query: 139 REGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYL--------LPVGIVL 190
RK ++S+ +K GK YL +PV I L
Sbjct: 219 --------------RKSRTSIIMK---------------HGKLYLKHNTFAEDIPVVIFL 249
Query: 191 KALVDTNDLEIFNHLTCCYDEKYKKEKGAVGS-PLVSERVKIILAEVQDLSLTTRLQCLQ 249
K + D E+ VGS + + + L E + T+ Q L
Sbjct: 250 KGMGVETDQEVVQ---------------LVGSEEIFLDAIASSLEECNKCKVHTQTQALD 294
Query: 250 HIGEHFQPVID--GLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLI----FMLQKLFSL 303
++G + + G+ +S A+ ++ + H+ F L + M++++
Sbjct: 295 YLGARIKSIRKPWGMSKKSKSEEAKDILAGVVLNHVPVRRYNFRLKVIYVALMIRRIIIA 354
Query: 304 VDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEI--ENNGKKFDFF 361
S D+ D N+ + L G LI++ ++ + +L + KK I N FDF
Sbjct: 355 TKDRSTLDDKDYYGNKRLELSGQLISLLFEDLFKKFLAELKKATDQAILKPNRAMVFDFA 414
Query: 362 NLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFF 421
++ I+ N +S + LK ++ +R+G T RL+F+ +
Sbjct: 415 SI--IRTETLTNGFVHAISSGQWNLKRFKM---------ERSGVTQVLSRLSFISALGMM 463
Query: 422 RAVHRGASFAGLRTTS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRG 480
+ + F R S R L P WG LCP TP+GE CGL+ + V +
Sbjct: 464 TRIQ--SQFEKTRKISGPRSLQPSQWGMLCPSDTPEGEACGLVKNFAQMTHVTT------ 515
Query: 481 NIRDFSKMRTSILRVLIGVGMIPSLPKLVKS---GPPAVLSVLLDGRVVGVIPSSEIEKV 537
+ +LR+ +G+ L L+ V L+G+++G+ S +
Sbjct: 516 -----DEPEGPLLRLAYNLGVQDIL--LITGEELNSRTAFLVFLNGQIIGIHNSPTL--F 566
Query: 538 VAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNI--SLPSEES 595
V LR+++ A I + ++ + A+ + + + RP+ + P +
Sbjct: 567 VNTLRKMR--RAGRIRE-----FISICKNEAHKTVSIACDGGRLCRPMIIVENGRPRVQQ 619
Query: 596 QNIELIG----PFEQVFMEIRCPDGGDGGRRNAFPATHE----------EIHPTGMLSVV 641
+IE + F+ E ++F A +E EI P +L V
Sbjct: 620 FHIEELKDGLRTFDDFIREGLIEYLDVNEENDSFLAWNESAVNKTTTHMEIEPFTLLGCV 679
Query: 642 ANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKY 701
+ L PY HNQSPRN YQC M KQ +G R D LY L PQ P+ +T T
Sbjct: 680 SALIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQLSRIDTLLYLLVYPQRPMCQTRTLELV 739
Query: 702 GIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDR 761
+ P G NA VAV++Y+GYD+EDA+++NK+S+DRG +++ + + N+
Sbjct: 740 NYVKLPAGHNATVAVMSYSGYDIEDALVMNKASLDRGFGRCIVFKKQVSAVKKYANQT-- 797
Query: 762 GQKLFRRNKDA--KSLHSVIDSDGLPYVGQMIHPGEPYCSIY------------DKTTNS 807
++ N + + +++D DG+ G++ G+ + Y DK +S
Sbjct: 798 ADRIIPPNAETSRQPKFALLDEDGIAKPGELAQKGQILINKYSPINTVDIVANSDKIPDS 857
Query: 808 WRTNS---RKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVC 864
+S K FVD V + + L K + R TR P +GDKFSSRHGQKGVC
Sbjct: 858 GYKSSYTAYKYENPAFVDKVMLTTGDDDQLLIK--LLMRSTRRPELGDKFSSRHGQKGVC 915
Query: 865 SQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
+ DMPF+ + G+ PD+I+NPH FPSRMTI ++E +A K
Sbjct: 916 GIIVKQEDMPFTDL-GICPDIIMNPHGFPSRMTIGKMIELLAGK 958
>gi|14520830|ref|NP_126305.1| DNA-directed RNA polymerase subunit B [Pyrococcus abyssi GE5]
gi|5458046|emb|CAB49536.1| rpoB DNA-directed RNA polymerase, subunit B (EC 2.7.7.6)
[Pyrococcus abyssi GE5]
gi|380741372|tpe|CCE70006.1| TPA: DNA-directed RNA polymerase subunit beta [Pyrococcus abyssi
GE5]
Length = 1117
Score = 250 bits (639), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 259/998 (25%), Positives = 420/998 (42%), Gaps = 199/998 (19%)
Query: 15 LVRHHIESFDYMLDEGLSEMFDHCRQAK-------ISYTGKLMADVEFQ----------- 56
LVR H++S++ +D GL E+ D K + + + + EFQ
Sbjct: 27 LVRQHLDSYNAFIDRGLQEVVDEFGGIKPDIPDFEVKFGKIRVGEPEFQEPHGQRKPLYP 86
Query: 57 --------------YLDAGSPVVRE------RFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
YL+ PV+R G+ P+MLK++ C L G +L L
Sbjct: 87 MDARIRNLTYSAPLYLEM-IPVIRGIEQEPVEVRIGELPIMLKSKVCRLYGLSDDELRQL 145
Query: 97 KEEAAEMGGYFILNGLERVFRSV--ILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRK 154
E+ + GGYFI+NG ERV S+ I P + ++V +R+E Y K R +
Sbjct: 146 GEDPKDPGGYFIINGSERVIVSIEDIAPNR----TLVEKD--ERQEKYIAKVFSYRHGYR 199
Query: 155 DQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGI-----------VLKALVDTNDLEIFN 203
+V K K+ +L VGI V++AL D +I +
Sbjct: 200 ALVTVERK-----------------KDGILYVGIPNVPKPVKFVYVMRALGLERDKDIVD 242
Query: 204 HLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLS-LTTRLQCLQHIGEHFQPVIDGL 262
AVG+ E +I+ ++D S +TT+ + L++IG+ P G
Sbjct: 243 ---------------AVGND--PEVQQILFDNLEDASDITTQQEALEYIGKLVAP---GQ 282
Query: 263 QSESYYAVAETVIRDYIFVHLN----DNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQN 318
E AE VI + + H+ D K L M K+ L D+ D N
Sbjct: 283 AREYRLKRAEYVIDNNLLPHIGVSPEDRIRKAYYLGMMALKVIELSLGKRDEDDKDHYAN 342
Query: 319 QEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQI 378
+ + L G L+ + ++ + + + G+K+ F N+ I
Sbjct: 343 KRLRLAGDLLKDLFRVAFSQLVKDIQYQMTKTYQRRGEKYVFGNIHRF-----------I 391
Query: 379 GTSIETMLKTGRL--ATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
SI + T R+ A TG R G + +R N++ +S R V
Sbjct: 392 RNSIRPDVLTERIEHALATGAWPGGRTGVSQLLDRTNYVSTLSHLRRVTSPLDREQPHFE 451
Query: 437 SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
+ R L WG +CP TP+G CGL+ ++ ++ + + + L
Sbjct: 452 A-RDLHGTHWGRICPTETPEGPNCGLVKNLALMAQITT-----------AVPEEEVKEYL 499
Query: 497 IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSE--IEKVVAHLRRLKVSAASVIP- 553
+ +G++P V+ P + V L+G ++G I + +E++ R K+S +
Sbjct: 500 MSLGIVPI---EVRRPSPELWRVYLNGVIIGTIEDGKALVERIKKDRRSGKISDIINVAY 556
Query: 554 -DDLEVGYVPLSLGGA-YPGLYLFTSPPKFVRP-VRNISLPSEESQNIELIGPFEQVFME 610
+D+ YV G P + + PK + V+ I + ++ +G E + E
Sbjct: 557 YEDVREVYVNSDDGRVRRPLIIVENGKPKLTKEHVQAIKEGRLKWSDLVRMGVIEYLDAE 616
Query: 611 IRCPDGGDGGRRNAFPA----------THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQC 660
NA+ A TH E+ P +L + A+L PY +HN +PRN Y
Sbjct: 617 ---------EEENAYVAMWPWEVTEEHTHLELMPAAILGLPASLIPYPEHNAAPRNTYGA 667
Query: 661 QMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYT 720
MAKQ++G + R D + + L PQ P+V + G ++ P G N +VAVLAY
Sbjct: 668 GMAKQSLGLGWANFRIRVDTRGHLLHYPQIPLVNSRIMKAVGYEDRPAGQNFVVAVLAYH 727
Query: 721 GYDMEDAMILNKSSVDRGMCHGQIY-------------QTETIDLSDDGNKVDRGQKLFR 767
GY+MEDA+I+NK+S++RG+ + QT+ ++ + RG+K +R
Sbjct: 728 GYNMEDAIIINKASIERGLARSTFFRTYEAEEKKYLGGQTDKFEIPSPTVRGYRGEKYYR 787
Query: 768 RNKDAKSLHSVIDSDGLPY-----------VGQMIHP------GEPYCSIYDKTTNSWRT 810
+D DGL + +G+ P G S+ ++ S
Sbjct: 788 H----------LDEDGLIFPESKVEGKDVLIGRTSPPRFLEERGLGAVSLQERRETS--- 834
Query: 811 NSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPD 870
+ + SE VD V + + + + + R R P IGDKF+SRHGQKGV + P
Sbjct: 835 VAVRPSERGVVDKVII--TETGDGTKLVKVTVRDLRIPEIGDKFASRHGQKGVIGLIVPQ 892
Query: 871 IDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
DMP++ +G+ PDLI+NPH PSRMT+ LLE++ K
Sbjct: 893 EDMPWTE-SGIVPDLIVNPHGIPSRMTVGQLLEAIGGK 929
>gi|347522774|ref|YP_004780344.1| DNA-directed RNA polymerase subunit B [Pyrolobus fumarii 1A]
gi|343459656|gb|AEM38092.1| DNA-directed RNA polymerase subunit B [Pyrolobus fumarii 1A]
Length = 1168
Score = 250 bits (639), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 261/953 (27%), Positives = 407/953 (42%), Gaps = 160/953 (16%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTR-----RCHLQGADSQK 92
CR ++Y + V L G V + G P+ML+++ RC + + ++
Sbjct: 96 CRIRDLTYEAPIRVRVR---LIEGVVVDEQEVVLGMLPIMLRSKADPLARCFYERGNVKE 152
Query: 93 ----LVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVV 148
L+ E+ + GGYFI+NG ERV N +V + +T K +
Sbjct: 153 CYELLIQKGEDPRDPGGYFIINGSERVVVIQEEQVVN--RVLVDKGRQQTGVKFTAKVIS 210
Query: 149 IRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCC 208
+ + +L ++ L + +P I+L+AL D +I ++
Sbjct: 211 F------HAGLRYQLILDMHKDGTLHVSMTRAITKIPFVILLRALGLERDRDIVLAIST- 263
Query: 209 YDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYY 268
P + + L + + ++ T+ + L+ IG F+ I G SE
Sbjct: 264 -------------DPEIQNMLYPSLEQAR--AIATQKEALEFIGARFREGI-GKPSEQRI 307
Query: 269 AVAETVIRDYIFVHLNDN-NDKFNLLIF---MLQKLFSLVDHTSVSDNPDSLQNQEILLP 324
VAE + +++ HL D+ +F M +KL L D+ D N+ +LL
Sbjct: 308 RVAEHALDNFLLPHLGTRPEDRLRKALFLADMARKLLELAAGRRQPDDKDHYANKRLLLA 367
Query: 325 GHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIET 384
G LI I + + + L QD I+ +E+ ++ S T
Sbjct: 368 GDLIAIVFRTAM-------RSLYQD----------------IRSQLERAKARGKRISPRT 404
Query: 385 MLK----TGRL--ATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSV 438
+++ T +L A TG QR G + +R N+L +S R V S + +
Sbjct: 405 VIRRDIITNKLHDALATGNWPGQRTGVSQLLDRTNWLSMLSHLRRVVSPLSRSQPHFEA- 463
Query: 439 RKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSR---GNIRDFSKM--RTSIL 493
R L WG +CP TP+G CGL+ ++ +++ D + IR+ ++ +L
Sbjct: 464 RDLHGTHWGRICPFETPEGPNCGLVKNLALMAYISAGVDEKEVEKVIRENFEIIDAEELL 523
Query: 494 RVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIP 553
R LI + V ++GR++G P E K+ +RRL+
Sbjct: 524 RKLIETEDVSEFLPYYMEVTSKYTRVYINGRLIGYYPDGE--KLAQEIRRLRRE------ 575
Query: 554 DDLEVGYVPLSLGGAY----PGLYLFTSPPKFVRP---VRNISLPSEESQNIELIGPFEQ 606
G + + AY LY+ T P + +RP V N L + ++IE I E
Sbjct: 576 -----GKLHYEVNVAYYRDVNELYVNTDPGRVLRPLFVVENGKL-KLKPEHIEKIKKGEW 629
Query: 607 VFME------IRCPDGGDGGRRNAFPA----------THEEIHPTGMLSVVANLTPYSDH 650
F + + D + NA+ A TH EI + V A+ PY++H
Sbjct: 630 KFTDLLKHGIVELLDAEE--EENAYVALNPEDITPEHTHMEIWTPAIFGVTASTIPYAEH 687
Query: 651 NQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGT 710
NQSPRN YQ MAKQ +G + RAD + + L P+ P+V+T G + P G
Sbjct: 688 NQSPRNTYQAAMAKQALGLYAANFQIRADTRGHLLHYPEKPLVQTRALDIIGFNNRPAGQ 747
Query: 711 NAIVAVLAYTGYDMEDAMILNKSSVDRGMCHG---QIYQTETIDLSDDGNKVDRGQKLF- 766
N +VAVL++TGY++EDA+I+NKSS+DRG+ ++Y TE K GQK
Sbjct: 748 NMVVAVLSFTGYNIEDAIIMNKSSIDRGLARSTFFRLYATEE-------RKYSGGQKDLL 800
Query: 767 ------RRNKDAKSLHSVIDS-----------DGLPYVGQMIHPGEPYC--SIYDKTTNS 807
+R + S+ID+ DG+ + GE + K +
Sbjct: 801 GCIDDPQRRPGCIDIKSIIDAKPPIAYRKLDIDGIVSPEVEVESGEVLIGKTAPPKFSEE 860
Query: 808 WR----TNSRKGSESV--------FVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFS 855
+R + R+ ESV VD V + N + +R R R P GDKF+
Sbjct: 861 FREIAVSTERRRDESVSVRHGERGTVDTVFITETNEGF--KLVKVRVRDLRIPEFGDKFA 918
Query: 856 SRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
SRHGQKGV L P DMPF+ G+ PDLIINPHAFPSRMT+ LLE++A K
Sbjct: 919 SRHGQKGVIGFLVPQYDMPFTE-DGITPDLIINPHAFPSRMTLGQLLETIAGK 970
>gi|340726257|ref|XP_003401477.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Bombus
terrestris]
gi|350425904|ref|XP_003494269.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Bombus
impatiens]
Length = 1175
Score = 250 bits (638), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 252/931 (27%), Positives = 403/931 (43%), Gaps = 106/931 (11%)
Query: 34 MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVR---ERFNFGQFPVMLKTRRCHLQGADS 90
M + R ++Y+ L D+ + G + ++ G+ P+ML+++ C L G
Sbjct: 109 MPNEARLRNLTYSAPLYVDITKTIVKDGEDPIETQHQKTFIGKIPIMLRSKYCLLAGLSD 168
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
+ L L E + GGYFI+NG E+V +I ++ ++ S +D + Y K+ +
Sbjct: 169 RDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFSMKDGKYAY--KSEIRS 223
Query: 151 CVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
C+ + + TL + + + G+ + +P+ IV +AL D +
Sbjct: 224 CLEHSSRPTSTLWINMMAKSGASIKKSAIGQRIIAIIPYIKQEIPIMIVFRALGFVADRD 283
Query: 201 IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
I H+ +D+ P + E VK L E + + L IG +
Sbjct: 284 ILEHIIYDFDD-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGT--RGARP 328
Query: 261 GLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
G+ E A +++ + H+ ++ K L +M+ +L S D+ D
Sbjct: 329 GVTKEKRIKYAREILQKEMLPHVGISDFCETKKAYFLGYMVHRLLSASLGRRELDDRDHY 388
Query: 317 QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
N+ + L G L+ + ++ L K +L + + GK F+ LA IK +K
Sbjct: 389 GNKRLDLAGPLLAFLFRGLFKN-LMKEVRLYAQKFIDRGKDFNL-ELA-IK-------TK 438
Query: 377 QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
I + L TG Q Q RAG + RL F +S R V+ G +
Sbjct: 439 IITDGLRYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRVNSPIGRDG-KLA 496
Query: 437 SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
R+L WG LCP TP+G GL+ ++ ++ + IL L
Sbjct: 497 KPRQLHNTLWGMLCPAETPEGAAVGLVKNLALMAYIS-----------VGSQPSPILEFL 545
Query: 497 IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAAS 550
M +L ++ S + ++G VG+ + ++++A LR+L+ VS S
Sbjct: 546 EEWSM-ENLEEIAPSAIADATKIFVNGCWVGI--HRDPDQLMATLRKLRRQMDIIVSEVS 602
Query: 551 VIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN----IELIGPF-- 604
+I D + + G L + R+I + E N EL+G
Sbjct: 603 MIRDIRDREIRIYTDAGRISRPLLIVEGQTLLLKKRHIDMLKERDYNNDGWQELVGSGVV 662
Query: 605 -------EQVFMEIRCPDGGDGGRRNAFPAT--HEEIHPTGMLSVVANLTPYSDHNQSPR 655
E+ M P+ + A+ T H EIHP +L V A++ P+ DHNQSPR
Sbjct: 663 EYIDTLEEETVMIAMSPEDLRQEKEYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPR 722
Query: 656 NMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVA 715
N YQ M KQ MG + R D + L P P+V T + E P G N+IVA
Sbjct: 723 NTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVA 782
Query: 716 VLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDD-GNKVDRGQKLFRRNKDA-- 772
+L YTGY+ ED++ILN S+V+RG Y++ S G++ ++ +K R+
Sbjct: 783 ILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDSESKRIGDQEEQFEKPTRQTCQGMR 842
Query: 773 KSLHSVIDSDGL-----------PYVGQMIHPGEPYCSIYDKTTNSWRTNSR----KGSE 817
+++ +D DG+ +G+ I E + D TT + + SE
Sbjct: 843 NAIYDKLDDDGIIAPGIRVSGDDVVIGKTITLPEADDEL-DSTTKRFTKRDASTFLRNSE 901
Query: 818 SVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSG 877
+ VD V + + NS+ + IR R R P IGDKF+SRHGQKG C + DMPFS
Sbjct: 902 TGIVDQVMLTL-NSEGY-KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFS- 958
Query: 878 VTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
G+ PD+IINPHA PSRMTI L+E + K
Sbjct: 959 CEGLTPDIIINPHAIPSRMTIGHLIECIQGK 989
>gi|383851705|ref|XP_003701372.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like
[Megachile rotundata]
Length = 1175
Score = 250 bits (638), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 252/931 (27%), Positives = 403/931 (43%), Gaps = 106/931 (11%)
Query: 34 MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVR---ERFNFGQFPVMLKTRRCHLQGADS 90
M + R ++Y+ L D+ + G + ++ G+ P+ML+++ C L G
Sbjct: 109 MPNEARLRNLTYSAPLYVDITKTIVKDGEDPIETQHQKTFIGKIPIMLRSKYCLLAGLSD 168
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
+ L L E + GGYFI+NG E+V +I ++ ++ S +D + Y K+ +
Sbjct: 169 RDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFSMKDGKYAY--KSEIRS 223
Query: 151 CVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
C+ + + TL + + + G+ + +P+ IV +AL D +
Sbjct: 224 CLEHSSRPTSTLWINMMAKSGASIKKSAIGQRIIAIIPYIKQEIPIMIVFRALGFVADRD 283
Query: 201 IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
I H+ +D+ P + E VK L E + + L IG +
Sbjct: 284 ILEHIIYDFDD-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGT--RGARP 328
Query: 261 GLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
G+ E A +++ + H+ ++ K L +M+ +L S D+ D
Sbjct: 329 GVTKEKRIKYAREILQKEMLPHVGISDFCETKKAYFLGYMVHRLLSASLGRRELDDRDHY 388
Query: 317 QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
N+ + L G L+ + ++ L K +L + + GK F+ LA IK +K
Sbjct: 389 GNKRLDLAGPLLAFLFRGLFKN-LMKEVRLYAQKFIDRGKDFNL-ELA-IK-------TK 438
Query: 377 QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
I + L TG Q Q RAG + RL F +S R V+ G +
Sbjct: 439 IITDGLRYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRVNSPIGRDG-KLA 496
Query: 437 SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
R+L WG LCP TP+G GL+ ++ ++ + IL L
Sbjct: 497 KPRQLHNTLWGMLCPAETPEGAAVGLVKNLALMAYIS-----------VGSQPSPILEFL 545
Query: 497 IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAAS 550
M +L ++ S + ++G VG+ + ++++A LR+L+ VS S
Sbjct: 546 EEWSM-ENLEEIAPSAIADATKIFVNGCWVGI--HRDPDQLMATLRKLRRQMDIIVSEVS 602
Query: 551 VIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN----IELIGPF-- 604
+I D + + G L + R+I + E N EL+G
Sbjct: 603 MIRDIRDREIRIYTDAGRISRPLLIVEGQNLLLKKRHIDMLKERDYNNDGWQELVGSGVV 662
Query: 605 -------EQVFMEIRCPDGGDGGRRNAFPAT--HEEIHPTGMLSVVANLTPYSDHNQSPR 655
E+ M P+ + A+ T H EIHP +L V A++ P+ DHNQSPR
Sbjct: 663 EYIDTLEEETVMIAMSPEDLRQEKEYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPR 722
Query: 656 NMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVA 715
N YQ M KQ MG + R D + L P P+V T + E P G N+IVA
Sbjct: 723 NTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVA 782
Query: 716 VLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDD-GNKVDRGQKLFRRNKDA-- 772
+L YTGY+ ED++ILN S+V+RG Y++ S G++ ++ +K R+
Sbjct: 783 ILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDSESKRIGDQEEQFEKPTRQTCQGMR 842
Query: 773 KSLHSVIDSDGL-----------PYVGQMIHPGEPYCSIYDKTTNSWRTNSR----KGSE 817
+++ +D DG+ +G+ I E + D TT + + SE
Sbjct: 843 NAIYDKLDDDGIIAPGIRVSGDDVVIGKTITLPEADDEL-DSTTKRFTKRDASTFLRNSE 901
Query: 818 SVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSG 877
+ VD V + + NS+ + IR R R P IGDKF+SRHGQKG C + DMPFS
Sbjct: 902 TGIVDQVMLTL-NSEGY-KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFS- 958
Query: 878 VTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
G+ PD+IINPHA PSRMTI L+E + K
Sbjct: 959 CEGLTPDIIINPHAIPSRMTIGHLIECIQGK 989
>gi|324120660|dbj|BAJ78721.1| RNA polymerase II second largest subunit [Vespa analis insularis]
Length = 1175
Score = 250 bits (638), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 253/931 (27%), Positives = 402/931 (43%), Gaps = 106/931 (11%)
Query: 34 MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVR---ERFNFGQFPVMLKTRRCHLQGADS 90
M + R ++Y+ L D+ G + ++ G+ P+ML+++ C L G
Sbjct: 109 MPNEARLRNLTYSAPLYVDITKTIEKDGEDPIETQHQKTFIGKIPIMLRSKYCLLAGLSD 168
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
+ L L E + GGYFI+NG E+V +I ++ ++ S +D + Y KA +
Sbjct: 169 RDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFSMKDGKYAY--KAEIRS 223
Query: 151 CVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
C+ + + TL + + + G+ + +P+ IV +AL D +
Sbjct: 224 CLEHSSRPTSTLWINMMAKSGASIKKSAIGQRIIAIIPYIKQEIPIMIVFRALGFVADRD 283
Query: 201 IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
I H+ +D+ P + E VK L E + + L IG +
Sbjct: 284 ILEHIIYDFDD-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGT--RGARP 328
Query: 261 GLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
G+ E A +++ + H+ ++ K L +M+ +L S D+ D
Sbjct: 329 GVTKEKRIKYAREILQKEMLPHVGISDFCETKKAYFLGYMVHRLLSASLGRRELDDRDHY 388
Query: 317 QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
N+ + L G L+ + ++ L K +L + + GK F+ LA IK +K
Sbjct: 389 GNKRLDLAGPLLAFLFRGLFKN-LMKEVRLYAQKFIDRGKDFNL-ELA-IK-------TK 438
Query: 377 QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
I + L TG Q Q RAG + RL F +S R V+ G +
Sbjct: 439 IITDGLRYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRVNSPIGRDG-KLA 496
Query: 437 SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
R+L WG LCP TP+G GL+ ++ ++ + IL L
Sbjct: 497 KPRQLHNTLWGMLCPAETPEGAAVGLVKNLALMAYIS-----------VGSQPSPILEFL 545
Query: 497 IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAAS 550
M +L ++ S + ++G VG+ + ++++A LR+L+ VS S
Sbjct: 546 EEWSM-ENLEEIAPSAIADATKIFVNGCWVGI--HRDPDQLMATLRKLRRQMDIIVSEVS 602
Query: 551 VIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN----IELIGPF-- 604
+I D + + G L + R+I + E N EL+G
Sbjct: 603 MIRDIRDREIRIYTDAGRISRPLLIVEGQNLLLKKRHIDMLKERDYNNDGWQELVGSGVV 662
Query: 605 -------EQVFMEIRCPDGGDGGRRNAFPAT--HEEIHPTGMLSVVANLTPYSDHNQSPR 655
E+ M P+ + A+ T H EIHP +L V A++ P+ DHNQSPR
Sbjct: 663 EYIDTLEEETVMIAMSPEDLRQEKEYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPR 722
Query: 656 NMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVA 715
N YQ M KQ MG + R D + L P P+V T + E P G N+IVA
Sbjct: 723 NTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVA 782
Query: 716 VLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDD-GNKVDRGQKLFRRNKDA-- 772
+L YTGY+ ED++ILN S+V+RG Y++ S G++ ++ +K R+
Sbjct: 783 ILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDSESKRIGDQEEQFEKPTRQTCQGMR 842
Query: 773 KSLHSVIDSDGL-----------PYVGQMIHPGEPYCSIYDKTTNSWRTNSR----KGSE 817
+++ +D DG+ +G+ I E + D TT + + SE
Sbjct: 843 NAIYDKLDDDGIIAPGIRVSGDDVVIGKTITLPETDDEL-DSTTKRFTKRDASTFLRNSE 901
Query: 818 SVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSG 877
+ VD V + + NS+ + IR R R P IGDKF+SRHGQKG C + DMPFS
Sbjct: 902 TGIVDQVMLTL-NSEGY-KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFS- 958
Query: 878 VTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
G+ PD+IINPHA PSRMTI L+E + K
Sbjct: 959 CEGLTPDIIINPHAIPSRMTIGHLIECIQGK 989
>gi|294883259|ref|XP_002770385.1| DNA-directed RNA polymerase I subunit, putative [Perkinsus marinus
ATCC 50983]
gi|239873951|gb|EER02692.1| DNA-directed RNA polymerase I subunit, putative [Perkinsus marinus
ATCC 50983]
Length = 299
Score = 249 bits (637), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 140/311 (45%), Positives = 187/311 (60%), Gaps = 23/311 (7%)
Query: 433 LRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCR-VASYYDSRGNIRDFSKMRTS 491
++TTSVRKLLPE+WGFLCPVHTPDG PCGLLNH+ + C+ V G I + S
Sbjct: 1 MKTTSVRKLLPETWGFLCPVHTPDGTPCGLLNHLAAPCQPVVRIASPEGVIPGLEEELAS 60
Query: 492 ILRVLIGVGMI-PSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSA-A 549
+ GV ++ S G V LDGRV+G + S +E V LRRLK+
Sbjct: 61 L-----GVQLVRSSKTSTANYGAGENAYVTLDGRVLGKVARSRLEAVAEELRRLKIDKDC 115
Query: 550 SVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFM 609
+P DLE+ V ++ GL+LFT P + VRPVR+++ + N EL+GP EQVF+
Sbjct: 116 PGVPADLEI--VACQTPASFEGLWLFTGPCRMVRPVRDLA-----TGNEELVGPMEQVFL 168
Query: 610 EIRCP--DGGDGGRRNAFPA------THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQ 661
+I D + ++ P TH E+ P MLSV+A LTP+S+HNQSPRNMYQCQ
Sbjct: 169 KIAATREDLEASTKTSSVPENIPMKYTHIELSPISMLSVIAGLTPFSNHNQSPRNMYQCQ 228
Query: 662 MAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTG 721
M KQTM +R D K+Y + PQ P+VRT ++ D P GTNAIVAV+A++G
Sbjct: 229 MLKQTMAIPYLNHPYRTDNKVYKITYPQFPMVRTTVLSEANFDVKPAGTNAIVAVIAHSG 288
Query: 722 YDMEDAMILNK 732
+DMEDA+I++K
Sbjct: 289 FDMEDALIISK 299
>gi|428180722|gb|EKX49588.1| hypothetical protein GUITHDRAFT_159421 [Guillardia theta CCMP2712]
Length = 1185
Score = 249 bits (637), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 254/942 (26%), Positives = 424/942 (45%), Gaps = 128/942 (13%)
Query: 38 CRQAKISYTGKLMADV---EFQYLDAGSPVV-----RERFNFGQFPVMLKTRRCHLQGAD 89
R K++Y+ +L D+ +++ GS + ER G+ PVML++ C L G
Sbjct: 104 ARLRKLTYSCQLFVDITLRKYKVASDGSEQLDNIDEHERVPLGKVPVMLRSEVCRLFGKY 163
Query: 90 SQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVI 149
++ ++ LKE + GGYF++NG E+V +L ++ ++V F+ + A V
Sbjct: 164 NKDIMDLKECPQDQGGYFVINGSEKV----LLAQERRANNLV-FVFKKTLGKFAYVAEVG 218
Query: 150 RCVRKDQ---SSVTLKLYYLLN-----GSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEI 201
V K S++ +KL+ N SV L KE +P+ IV +AL +D EI
Sbjct: 219 SQVEKGNKPPSTLYMKLWNRENNARFGASVVLTLPYVRKE--IPIVIVFRALGIESDREI 276
Query: 202 FNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDG 261
H+ Y+ K + A+ P + E A+ +DLS TR L +IG +
Sbjct: 277 LEHIV--YNLKDVQMMEAL-RPSLDE-----AAQGKDLS--TREAALDYIGRRALGMTTS 326
Query: 262 LQSESYYAVAETVIRD---YIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQN 318
++ +A + +IR+ +I + K L ++ +L + D+ D N
Sbjct: 327 RENRIQHA-HDILIRELLPHIGITEESLTKKQYFLGYVCNRLLACSLGRRQPDDRDHYGN 385
Query: 319 QEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQI 378
+ + + G L+ K + +++ +K +QD ++N GK+ + N A + + K
Sbjct: 386 KRVDMAGPLLAGLFKGCFKRLVKEFRKSLQDSLDN-GKEVNM-NTAFKQDFITK------ 437
Query: 379 GTSIETMLKTGRLATQTGLDLQQ--RAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
I+ + TG Q R G + RL F +S R + G +
Sbjct: 438 --GIKYCMATGNWGVGKAAVAGQATRTGVSQVLSRLTFAAALSHLRRANTPIGKEG-KIA 494
Query: 437 SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
R+L WG +CP TP+G+ CGL+ +++ + +Y G + ++ L
Sbjct: 495 QPRQLHNTQWGVVCPAETPEGQACGLVKNLS----LMTYVSVGGA--------SQVIIEL 542
Query: 497 IGVGMIPSLPKLVKSGPPAVLS------VLLDGRVVGVIPSSEIEKVVAHLRRLKVSAAS 550
+ G + L +L PA+ + V ++G VG+ + +R +++
Sbjct: 543 LQAGGMEELEELAS---PAICASSRFSKVFVNGVWVGMTDDPDNLANTLREQRREMTIGG 599
Query: 551 VIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPV--------------RNISLPSEESQ 596
+I EVG V +G L++ T + +RP+ NI ++ Q
Sbjct: 600 MIH---EVG-VARDIGERE--LFISTDYGRLMRPLLIVDKETGFLNLKRSNIIHMTQNEQ 653
Query: 597 N----------IELIGPFEQ----VFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVA 642
IE I E+ + M ++ D G + + TH EIHP +L V A
Sbjct: 654 TTWSEILRKGFIEYIDVMEEETCYIAMLVK-----DVGSNDLYQYTHCEIHPAMILGVCA 708
Query: 643 NLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYG 702
++ P+ DHNQSPRN YQ M KQ MG + R D + L PQ P+V+T++
Sbjct: 709 SIIPFPDHNQSPRNTYQSAMGKQAMGIYATNYQVRIDTLAHVLYYPQKPLVKTHSMDYLK 768
Query: 703 IDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDG----NK 758
E P G N IVA+ Y+GY+ ED++I+++SS+DRGM Y++ T + +G +
Sbjct: 769 FRELPAGQNLIVAIAVYSGYNQEDSLIMSQSSIDRGMFRSMFYRSYTDEQKTEGVLCLEQ 828
Query: 759 VDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSR----- 813
++ Q+ + ++ + +D DGL + Q + + TNS ++
Sbjct: 829 FEKPQREELGSASSRVNYDKLDVDGLVFPAQNVEDRDIIIGKTTLVTNSDDSDQAQIAVK 888
Query: 814 -------KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQ 866
+ +E VD V + NS + I+ R R P IGDKF+SRHGQKG
Sbjct: 889 RDSSTRLRHNEHGVVDQVLL-TTNSDTGQRFVQIKVRAVRVPQIGDKFASRHGQKGTVGI 947
Query: 867 LWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
+ DMPF+ G+ PDLI+NPHA PSRMTI L+E++ K
Sbjct: 948 TYRQDDMPFTS-EGVSPDLIVNPHAIPSRMTIGHLIETLLGK 988
>gi|294950795|ref|XP_002786777.1| DNA-directed RNA polymerase III subunit 127.6 kDa polypeptide,
putative [Perkinsus marinus ATCC 50983]
gi|239901131|gb|EER18573.1| DNA-directed RNA polymerase III subunit 127.6 kDa polypeptide,
putative [Perkinsus marinus ATCC 50983]
Length = 1140
Score = 249 bits (637), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 255/941 (27%), Positives = 401/941 (42%), Gaps = 161/941 (17%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRER-FNFGQFPVMLKTRRCHLQGADSQKLVSL 96
CR ++Y ++ D+ + G VVR+ G+ P+ML+++ C L A ++++ +
Sbjct: 109 CRIRDMTYASDILVDISYVR---GREVVRKNGVCVGRLPIMLRSKLCRLHDATTEQMERM 165
Query: 97 KEEAAEMGGYFILNGLERVF---------RSVI-LPKQNYPMSMVRSSFRDRREGYTDKA 146
+E + GGYFI+ G E+V R ++ + + ++V SS D +K+
Sbjct: 166 QECPHDPGGYFIIKGTEKVLLMQEQLSNNRIIVEMDPKKLVQAVVTSSTAD------NKS 219
Query: 147 VVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLT 206
+ C + + S + +K L+P I+L+A+ +D EI +
Sbjct: 220 RTVVCFKSELSGLFVKHSAFTE--------------LIPAVIMLRAMGMESDQEIVQMV- 264
Query: 207 CCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVI--DGLQS 264
EK V ++S L + + ++ Q L+++G + + DG S
Sbjct: 265 -------GTEKCHVDGMILS------LQDAHATGVFSQQQALEYLGNKLKIRMYADGSFS 311
Query: 265 ESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLP 324
++ + F + K L M+++ +++ D+ D N+ + L
Sbjct: 312 SAFDQDKGGATKPLDF------SGKCRFLCLMMRRALDARSDSTLLDDRDYYGNKRLELA 365
Query: 325 GHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIET 384
G LI + ED + I+ ++ KF ++ S + G S
Sbjct: 366 GQLIALLF----EDLFKSMNTEIKKSVDMRLTKF-----------FQQTSSARAGRST-V 409
Query: 385 MLKTGR---LATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGAS-FAGLRTTS-VR 439
L +G L TG + R + ++ L+ FI+ A+ R S F R + R
Sbjct: 410 GLDSGYPDVLLRATGNIKRFRIDRSGVSQVLSRFSFIAALGAMTRVKSQFEKSRKLAGPR 469
Query: 440 KLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGV 499
L P WG LCP TP+GE CGL+ ++ V + D G IR L V
Sbjct: 470 ALQPSQWGMLCPSDTPEGEQCGLIKALSLLAHVTTP-DEEGPIRRLCYS----LGVEDAA 524
Query: 500 GMIPSLPKLVKSGPPAVLSVLLDGRVVGV--IPSSEIEKVVAHLRRLKVSA-ASVIPDDL 556
G+ +L +G ++V L+G ++GV P + + + RR K+ S+ +
Sbjct: 525 GLTGE--ELHSAG---TITVFLNGALLGVHRRPQTFMSDMRTLRRRGKIGEFVSIYEHEA 579
Query: 557 EVGYVPLSLGG--AYPGLYLFTSPPKF-----VRPVRNISLP---------------SEE 594
+ + + GG P + + P +R +R+ L +EE
Sbjct: 580 QRAIIIATDGGRLCRPLIVVKKGKPMLKPEVHLRKLRSGELRFTDFLRLGIIEWVDVNEE 639
Query: 595 SQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSP 654
+ + I P E V ME +TH EI P +L VA L PY HNQSP
Sbjct: 640 NNSYIAINP-EDVTME----------------STHLEIEPLTLLGAVAGLVPYPHHNQSP 682
Query: 655 RNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIV 714
RN YQC M KQ MG R D +L L PQ P+ ++ T G D P G NA V
Sbjct: 683 RNTYQCAMGKQAMGNIACNQHLRTDTQLLLLTYPQQPMCKSRTIDLIGYDNLPAGHNASV 742
Query: 715 AVLAYTGYDMEDAMILNKSSVDRGM---CHGQIYQTETIDLSDDGNKVDRGQKLFRRNKD 771
AV++Y+GYD+EDA+I+NK+S+DRG C + Y T + ++ R +
Sbjct: 743 AVMSYSGYDIEDALIMNKASIDRGFGRCCVTRKYATPLARSAIGSSEELRAPPVVGGGGK 802
Query: 772 AKSL-------------HSVIDSDGLPYVGQMIHPG-------EPYCSIYDKTTNSWRTN 811
+++ID DGLP+ G+ + G P + WR
Sbjct: 803 GGGRHQRQGGFVGRAKKYAIIDEDGLPFSGEQVVDGGILINKVSPMSDAATGQVSHWRDT 862
Query: 812 --SRKGSESVFVDYVAVDMKNSKNLPQKANIRF--RHTRNPIIGDKFSSRHGQKGVCSQL 867
S K +VD V ++N Q + R TR P +GDKFSSRHGQKGV +
Sbjct: 863 PISYKNPVPSYVDRVIA----TENEDQAKIFKCITRQTRRPELGDKFSSRHGQKGVVGLI 918
Query: 868 WPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
DMPF G G PDLI+NPH FPSRMT+ LLE V+ K
Sbjct: 919 VNQEDMPF-GEKGWCPDLIMNPHGFPSRMTVGKLLECVSGK 958
>gi|302848540|ref|XP_002955802.1| hypothetical protein VOLCADRAFT_66175 [Volvox carteri f.
nagariensis]
gi|300258995|gb|EFJ43227.1| hypothetical protein VOLCADRAFT_66175 [Volvox carteri f.
nagariensis]
Length = 1154
Score = 249 bits (637), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 265/1000 (26%), Positives = 408/1000 (40%), Gaps = 200/1000 (20%)
Query: 9 FEPLRELVRHHIESFDYMLDEGLSEMF--------------------------------- 35
F +R LV+ H++SF+++L+ L ++
Sbjct: 44 FLKVRGLVKQHLDSFNFLLNSELRKIVAANEKVTCDTDPNFYLKYTNIYVGSPSMDEDMV 103
Query: 36 ------DHCRQAKISYTGKLMADVEFQYLDAGSPVVRER-------FNFGQFPVMLKTRR 82
CR +Y+ + D+E+ G +V +R G+ P+ML+ R
Sbjct: 104 QVGTTPQQCRLRDATYSAPITVDIEYT---RGKEIVVKRGRGGVGAVCIGRMPLMLRCDR 160
Query: 83 CHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGY 142
C L G + +L L E + GGYFI+ G E+V +++ +Q +S R G
Sbjct: 161 CVLYGKNEAQLAQLGECPLDPGGYFIVRGTEKV---ILIQEQ---LSKNRIIVDTDSHGE 214
Query: 143 TDKAVVIRC-VRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYL--------LPVGIVLKAL 193
+V RK ++++ +GK YL + + +VLKA+
Sbjct: 215 VIASVTSSTHERKSKTNIVFS---------------KGKIYLKHNAFQDDVNIMVVLKAM 259
Query: 194 VDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGE 253
+D E+ + G G S R + + + L + T++Q L ++G
Sbjct: 260 GCESDQEVVQAVV----------GGGFGVRAASGRDGGL--DAKSLGVFTQMQALDYLGT 307
Query: 254 HFQPVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKFN-----LLIFMLQKLFSLVDHTS 308
+ + +S A V+ + + H+ +F + + M + L++++D
Sbjct: 308 RLRK-----RRKSKVDEARDVLANVVLCHVPVPRYQFAHKIAYVAVMMRRMLYAVLDPAC 362
Query: 309 VSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKK 368
+ D D N+ + L G L+++ L E L L K D + + + F++A +
Sbjct: 363 IDDR-DYYGNKRLELAGALMSL-LFEDLFKRLNSDIKRQADSVLSKANRATQFDVAKAIR 420
Query: 369 VMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGA 428
+ I +E+ L +G + +R G T RL+F+ + +
Sbjct: 421 ------TDTITYGLESALSSGNWIIKR--FRMERKGVTQVLSRLSFIAAMGMM--TRMTS 470
Query: 429 SFAGLRTTS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSK 487
F R S R L P WG LCP TP+GE CGL+ ++ V + D +
Sbjct: 471 QFEKTRKVSGPRALHPSQWGMLCPADTPEGESCGLVKNLALMTHVTT---------DEEE 521
Query: 488 MRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGV-IPSSEIEKVVAHLRR--- 543
+ L V++G I SL G L V L+G +VGV + K V LRR
Sbjct: 522 VSICRLLVMLGTEPITSLAPAEMHGQGGAL-VFLNGNLVGVHRRPHRLVKEVRELRRAGH 580
Query: 544 --------LKVSAASVIPDDLEVGYVPLSLGGAYP------------GLYLFTSPPKFVR 583
L+ A V D V + P G + F P F+R
Sbjct: 581 LGEFVHVHLQQDACYVSADGGRVCRPLIICDAGVPRVRQEHITKLRSGEWTF---PDFLR 637
Query: 584 PVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVAN 643
L E +N+ LI +E+ ++ TH EI P ++ VV+
Sbjct: 638 RGLVEYLDVNE-ENVSLIALYEKDCNKM---------------TTHLEIEPFTIMGVVSG 681
Query: 644 LTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGI 703
L P+ HNQSPRN YQC M KQ MG R D LY L PQ P++ T T G
Sbjct: 682 LIPFPHHNQSPRNTYQCAMGKQAMGNIAYNQLSRMDTLLYLLVYPQRPLLTTRTIELVGF 741
Query: 704 DEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKV-DR- 761
D+ G NA VAV++Y+GYD+EDA+++NK S+DRG + + L N+ DR
Sbjct: 742 DKLGAGQNASVAVMSYSGYDIEDAIVMNKYSLDRGFGRCIVLKKYGCSLRKYANRSHDRI 801
Query: 762 -------GQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGE---------------PYCS 799
GQ K +S ++D DG+ VG I PG+ P +
Sbjct: 802 VAPLPAPGQ------KSVQSRFRLLDRDGIASVGDYILPGDVYINMQRPSNTRDPLPASN 855
Query: 800 IYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIR--FRHTRNPIIGDKFSSR 857
+ D + +R G F V + N +R RHTR P +GDKFSSR
Sbjct: 856 MPDSFYRAGEGCTRAGQALGFCSSVGGGGREGANKHCVWGMRVLIRHTRRPELGDKFSSR 915
Query: 858 HGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMT 897
HGQKGV + D PFS G+ PDLI+NPH FPSRMT
Sbjct: 916 HGQKGVVGNIVRQEDFPFS-ERGVCPDLIMNPHGFPSRMT 954
>gi|324120670|dbj|BAJ78726.1| RNA polymerase II second largest subunit [Eretes sticticus]
Length = 1174
Score = 249 bits (636), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 252/945 (26%), Positives = 409/945 (43%), Gaps = 134/945 (14%)
Query: 34 MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVR---ERFNFGQFPVMLKTRRCHLQGADS 90
M + R ++Y+ L D+ + G + ++ G+ P+ML++ C L G
Sbjct: 108 MPNEARLRNLTYSAPLYVDITKTIVKDGEDPIETQHQKTFIGKIPIMLRSTYCLLSGLTD 167
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
+ L L E + GGYFI+NG E+V +I ++ ++ + +D + Y KA +
Sbjct: 168 RDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFAMKDGKYAY--KAEIRS 222
Query: 151 CVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
C+ + + TL + + G + G+ + +P+ IV +AL D +
Sbjct: 223 CLEHSSRPTSTLWVNMMARGGQAIKKAAIGQRIIAILPYIKQEIPIMIVFRALGFVADRD 282
Query: 201 IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
I H+ +++ P + E VK L E + + L IG +
Sbjct: 283 ILEHIIYDFED-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGA--RGAKP 327
Query: 261 GLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
G+ E A +++ + H+ ++ K L +M+ +L D+ D
Sbjct: 328 GVTKEKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 387
Query: 317 QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
N+ + L G L+ + ++ +++ + Q I + GK F+ +LA IK +K
Sbjct: 388 GNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFI-DKGKDFNL-DLA-IK-------TK 437
Query: 377 QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
I + L TG Q Q RAG + RL F +S R V+ G +
Sbjct: 438 MITDGLRYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRVNSPIGRDG-KLA 495
Query: 437 SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
R+L WG +CP TP+G GL+ ++ ++ + IL L
Sbjct: 496 KPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYIS-----------VGSQPSPILEFL 544
Query: 497 IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAAS 550
M +L ++ S + ++G VG+ + E+++A LR+L+ VS S
Sbjct: 545 EEWSM-ENLEEIAPSAIADATKIFVNGCWVGI--HRDPEQLMATLRKLRRQMDIIVSEVS 601
Query: 551 VIPD--DLEVGYVPLSLGGAYPGLYLFTSPPKFVRPV------------RNISLPSEESQ 596
+I D D E+ ++T + RP+ R+I + E
Sbjct: 602 MIRDIRDREI--------------RIYTDAGRICRPLLIVENGNLLLKKRHIDMLKEREY 647
Query: 597 N------------IELIGPFEQ-VFMEIRCPDGGDGGRRNAFPAT--HEEIHPTGMLSVV 641
N +E I E+ M PD + A+ T H EIHP +L V
Sbjct: 648 NNYGWQVLVASGVVEYIDTLEEETVMIAMSPDDLRQEKEYAYCTTYTHCEIHPAMILGVC 707
Query: 642 ANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKY 701
A++ P+ DHNQSPRN YQ M KQ MG + R D + L P P+V T +
Sbjct: 708 ASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYL 767
Query: 702 GIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT-ETIDLSDDGNKVD 760
E P G N+IVA+L YTGY+ ED++ILN S+V+RG Y++ + + G++ +
Sbjct: 768 RFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDAESKRLGDQEE 827
Query: 761 RGQKLFRRNKDA--KSLHSVIDSDGL-----------PYVGQMIHPGEPYCSIYDKTTNS 807
+ +K R+ +L+ +D DG+ +G+ I E + D TT
Sbjct: 828 QFEKPTRQTCQGMRNALYDKLDDDGIISPGIRVSGDDVVIGKTITLPENDDEL-DGTTKR 886
Query: 808 WRTNSR----KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGV 863
+ + SE+ VD V + + NS+ + IR R R P IGDKF+SRHGQKG
Sbjct: 887 YTKRDASTFLRNSETGIVDQVMLTL-NSEGY-KFCKIRVRSVRIPQIGDKFASRHGQKGT 944
Query: 864 CSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
C + DMPF+ G+ PD+IINPHA PSRMTI L+E + K
Sbjct: 945 CGIQYRQEDMPFT-CEGLTPDIIINPHAIPSRMTIGHLIECIQGK 988
>gi|209489360|gb|ACI49130.1| hypothetical protein Cbre_JD16.002 [Caenorhabditis brenneri]
gi|341883892|gb|EGT39827.1| hypothetical protein CAEBREN_00456 [Caenorhabditis brenneri]
Length = 1152
Score = 249 bits (636), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 249/951 (26%), Positives = 411/951 (43%), Gaps = 140/951 (14%)
Query: 28 DEGLSEMFD-----HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRR 82
+EGL+ D CR ++Y+ + D+E Y V+++ G+ P+ML++ +
Sbjct: 89 EEGLNMTHDKITPQECRLRDMTYSAPISVDIE--YTRGNQRVLKKDLIIGRMPIMLRSSK 146
Query: 83 CHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGY 142
C L+ + L ++E + GGYF++ G E+V IL ++ + + +E
Sbjct: 147 CILRDLAEEGLARVQECPYDPGGYFVVKGSEKV----ILIQEQLSKNRIMVGRNSSKE-- 200
Query: 143 TDKAVVIRC-VRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---LPVGIVLKALVDTND 198
++C V S K Y +V+ G +L L +PV I+ KA+ +D
Sbjct: 201 ------LQCEVLSSTSERKSKTYV----TVKKGKYLVRHNQLTDDVPVSIIFKAMGIESD 250
Query: 199 LEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHI-----GE 253
+I + T ++EKY VS + I E + + T+ Q L ++
Sbjct: 251 YDIVS--TIGHEEKY-----------VSAFAQTI-EECINAGVYTQQQALAYVTSKVKAR 296
Query: 254 HFQPVIDGLQSESYYAV-------AETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDH 306
F P L S + A + + + H+ + F + L ++ +
Sbjct: 297 KFTP-FGSLPGTSVSVLTPPKEHEAVDFLSNSMITHIACPDGNFKMKAIYLGQMTRRLIQ 355
Query: 307 TSVSDNP----DSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFN 362
T + +N D N+ + L G L+ + ++ + + + K+ I +N
Sbjct: 356 TELGENELDDRDFYGNKRLELAGSLLALLFEDVFKRFNSELKR-----IADNALMKTMAA 410
Query: 363 LANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFR 422
+I K M ++ I +I + TG + +R G T RL+++ +
Sbjct: 411 PLDIVKHMRQD---MITNTIVNAMSTGNWIIKRFR--MERLGVTQVLSRLSYISALGMMT 465
Query: 423 AVHRGASFAGLRTTS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGN 481
++ ++F R S R L P WG LCP TP+GE CGL+ ++ + + D +
Sbjct: 466 RIN--STFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALISHITTDSDEK-- 521
Query: 482 IRDFSKMRTSILRVLIGVGMIPSLPKLVKS--GPPAVLSVLLDGRVVGVIPSSEIEKVVA 539
+LR+L+ G + L + S P + L+G ++G + + E+VV
Sbjct: 522 ---------PVLRLLLNSG-VEDLNNVHFSHINKPENTLIFLNGVLIGT--AVDPERVVR 569
Query: 540 HLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRP--VRNISLPSEESQN 597
+R L+ S L +V +S +++ + + RP + P +N
Sbjct: 570 AVRDLRRSG-------LLSEFVSVSRSITNRSVFISSDGGRLCRPYIIVKDGKPMLTQEN 622
Query: 598 IELIGPFEQVFMEIRCPDGG-----DGGRRN-----------AFPATHEEIHPTGMLSVV 641
+ + +++F + D G D N TH EI P +L V
Sbjct: 623 VTELKEGKRIFEDF--VDDGIVEYLDVNEMNDALIAVYENEIGLETTHLEIEPFTLLGVC 680
Query: 642 ANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKY 701
A L PY HNQSPRN YQC M KQ MG + R D +Y L PQ P+V++ T
Sbjct: 681 AGLIPYPHHNQSPRNTYQCAMGKQAMGTIAYNQQKRIDSIMYLLCYPQRPLVKSKTIELI 740
Query: 702 GIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKV-D 760
++ P G N I+AV++Y+GYD+EDA++LNK+S+DRG +Y+ N+ D
Sbjct: 741 NFEKLPAGANGIIAVMSYSGYDIEDALVLNKASLDRGYGRCLVYKHVKGTARKYPNQTFD 800
Query: 761 R--GQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIY------DKTTNSWRTNS 812
R G L K H +D +G+ + G I P + + + D S N+
Sbjct: 801 RLLGPALDPITKKPIMKHKNLDKEGIVFAGARILPKQTIINKHMPVVSGDNNPASASANT 860
Query: 813 RKGSESVFVDYVAVDMKNSKNLPQKA---------------NIRFRHTRNPIIGDKFSSR 857
G VDY V + P A + R TR P +GDKFSSR
Sbjct: 861 -IGIAGRQVDYKDVSVTYKTPTPSYAERVLLTYNEEEAHLFKVLLRQTRRPELGDKFSSR 919
Query: 858 HGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
HGQKGVC + DMPF+ + GM PD+I+NPH +PSRMT+ L+E ++ K
Sbjct: 920 HGQKGVCGLIAQQEDMPFNDL-GMVPDMIMNPHGYPSRMTVGKLMELLSGK 969
>gi|324120658|dbj|BAJ78720.1| RNA polymerase II second largest subunit [Neocolochelyna itoi]
Length = 1175
Score = 249 bits (636), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 254/930 (27%), Positives = 403/930 (43%), Gaps = 104/930 (11%)
Query: 34 MFDHCRQAKISYTGKLMADVEFQYL-DAGSPV--VRERFNFGQFPVMLKTRRCHLQGADS 90
M + R ++Y+ L D+ + DA PV ++ G+ P+ML++ C L G
Sbjct: 109 MPNEARLRNLTYSAPLYVDITKTIVKDAEDPVETQHQKTFIGKIPIMLRSTYCLLSGLTD 168
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
+ L L E + GGYFI+NG E+V +I ++ ++ S +D + Y KA +
Sbjct: 169 RDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFSMKDGKYAY--KAEIRS 223
Query: 151 CVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
C+ + + TL + + + G+ + +P+ IV +AL D +
Sbjct: 224 CLEHSSRPTSTLWVNMMAKSGASIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRD 283
Query: 201 IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
I H+ +D+ P + E VK L E + + L IG +
Sbjct: 284 ILEHIIYDFDD-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGT--RGARP 328
Query: 261 GLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
G+ E A +++ + H+ ++ K L +M+ +L S D+ D
Sbjct: 329 GVTKEKRIKYAREILQKEMLPHVGISDFCETKKAYFLGYMVHRLLSASLGRRELDDRDHY 388
Query: 317 QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
N+ + L G L+ + ++ L K +L + + GK F+ LA IK +K
Sbjct: 389 GNKRLDLAGPLLAFLFRGLFKN-LMKEVRLYAQKFIDRGKDFNL-ELA-IK-------TK 438
Query: 377 QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
I + L TG Q Q RAG + RL F +S R V+ G +
Sbjct: 439 IITDGLRYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRVNSPIGRDG-KLA 496
Query: 437 SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
R+L WG LCP TP+G GL+ ++ ++ + IL L
Sbjct: 497 KPRQLHNTLWGMLCPAETPEGAAVGLVKNLALMAYIS-----------VGSQPSPILEFL 545
Query: 497 IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAAS 550
M +L ++ S + ++G VG+ + E+++A LR+L+ VS S
Sbjct: 546 EEWSM-ENLEEIAPSAIADATKIFVNGCWVGI--HRDPEQLMATLRKLRRQMDIIVSEVS 602
Query: 551 VIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEE------------SQNI 598
+I D + + G L + R+I + E S +
Sbjct: 603 MIRDIRDREIRIYTDAGRICRPLLIVEGQNLLLKKRHIDMLKERDYTNYGWQVLVASGVV 662
Query: 599 ELIGPFEQ-VFMEIRCPDGGDGGRRNAFPAT--HEEIHPTGMLSVVANLTPYSDHNQSPR 655
E I E+ M P+ + A+ T H EIHP +L V A++ P+ DHNQSPR
Sbjct: 663 EYIDTLEEETVMIAMSPEDLRQEKEYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPR 722
Query: 656 NMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVA 715
N YQ M KQ MG + R D + L P P+V T + E P G N+IVA
Sbjct: 723 NTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVA 782
Query: 716 VLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDD-GNKVDRGQKLFRRNKDA-- 772
+L YTGY+ ED++ILN S+V+RG Y++ S G++ ++ +K R+
Sbjct: 783 ILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDSESKRIGDQEEQFEKPTRQTCQGMR 842
Query: 773 KSLHSVIDSDGL-----------PYVGQMIHPGEPYCSIYDKTTNSWRTNSR---KGSES 818
+++ +D DG+ +G+ I E + T + ++ + SE+
Sbjct: 843 NAIYDKLDDDGIIAPGIRVSGDDVVIGKTITLPETDDELDSATKRFTKRDASTFLRNSET 902
Query: 819 VFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGV 878
VD V + + NS+ + IR R R P IGDKF+SRHGQKG C + DMPFS
Sbjct: 903 GIVDQVMLTL-NSEGY-KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFS-C 959
Query: 879 TGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
G+ PD+IINPHA PSRMTI L+E + K
Sbjct: 960 EGLTPDIIINPHAIPSRMTIGHLIECIQGK 989
>gi|294953589|ref|XP_002787839.1| DNA-directed RNA polymerase III subunit 127.6 kDa polypeptide,
putative [Perkinsus marinus ATCC 50983]
gi|239902863|gb|EER19635.1| DNA-directed RNA polymerase III subunit 127.6 kDa polypeptide,
putative [Perkinsus marinus ATCC 50983]
Length = 1159
Score = 249 bits (636), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 253/954 (26%), Positives = 406/954 (42%), Gaps = 168/954 (17%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRER-FNFGQFPVMLKTRRCHLQGADSQKLVSL 96
CR ++Y ++ D+ + G VVR+ G+ P+ML+++ C L A ++++ +
Sbjct: 109 CRIRDMTYASDILVDISYVR---GREVVRKNGVCVGRLPIMLRSKLCRLHDATTEQMERM 165
Query: 97 KEEAAEMGGYFILNGLERVF---------RSVI-LPKQNYPMSMVRSSFRDRREGYTDKA 146
+E + GGYFI+ G E+V R ++ + + ++V SS D +K+
Sbjct: 166 QECPHDPGGYFIIKGTEKVLLMQEQLSNNRIIVEMDPKKLVQAVVTSSTAD------NKS 219
Query: 147 VVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLT 206
+ C + + S + +K L+P I+L+A+ +D EI +
Sbjct: 220 RTVVCFKSELSGLFVKHSAFTE--------------LIPAVIMLRAMGMESDQEIVQMV- 264
Query: 207 CCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVI--DGLQS 264
EK V ++S L + + ++ Q L+++G + + DG S
Sbjct: 265 -------GTEKCHVDGMILS------LQDAHATGVFSQQQALEYLGNKLKIRMYADGSFS 311
Query: 265 ESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLP 324
++ + F + K L M+++ +++ D+ D N+ + L
Sbjct: 312 SAFDQDKGGATKPLDF------SGKCRFLCLMMRRALDARSDSTLLDDRDYYGNKRLELA 365
Query: 325 GHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKK-------------VME 371
G LI + ED + I+ ++ KF F ++ + V+
Sbjct: 366 GQLIALLF----EDLFKSMNTEIKKSVDMRLTKF-FQQTSSARAGRSTVGLDSGYPDVLR 420
Query: 372 KNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGAS-F 430
S++I + + +G + + R + ++ L+ FI+ A+ R S F
Sbjct: 421 DIDSERITRGMNRAISSGNWNIK-----RFRIDRSGVSQVLSRFSFIAALGAMTRVKSQF 475
Query: 431 AGLRTTS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMR 489
R + R L P WG LCP TP+GE CGL+ ++ V + D G IR
Sbjct: 476 EKSRKLAGPRALQPSQWGMLCPSDTPEGEQCGLIKALSLLAHVTTP-DEEGPIRRLCYS- 533
Query: 490 TSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGV--IPSSEIEKVVAHLRRLKVS 547
L V G+ +L +G ++V L+G ++GV P + + + RR K+
Sbjct: 534 ---LGVEDAAGLTGE--ELHSAG---TITVFLNGALLGVHRRPQTFMSDMRTLRRRGKIG 585
Query: 548 A-ASVIPDDLEVGYVPLSLGG--AYPGLYLFTSPPKF-----VRPVRNISLP-------- 591
S+ + + + + GG P + + P +R +R+ L
Sbjct: 586 EFVSIYEHEAQRAIIIATDGGRLCRPLIVVKKGKPMLKPEVHLRKLRSGELRFTDFLRLG 645
Query: 592 -------SEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANL 644
+EE+ + I P E V ME +TH EI P +L VA L
Sbjct: 646 IIEWVDVNEENNSYIAINP-EDVTME----------------STHLEIEPLTLLGAVAGL 688
Query: 645 TPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGID 704
PY HNQSPRN YQC M KQ MG R D +L L PQ P+ ++ T G D
Sbjct: 689 VPYPHHNQSPRNTYQCAMGKQAMGNIACNQHLRTDTQLLLLTYPQQPMCKSRTIDLIGYD 748
Query: 705 EYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGM---CHGQIYQTETIDLSDDGNKVDR 761
P G NA VAV++Y+GYD+EDA+I+NK+S+DRG C + Y T + ++ R
Sbjct: 749 NLPAGHNASVAVMSYSGYDIEDALIMNKASIDRGFGRCCVTRKYATPLARSAIGSSEELR 808
Query: 762 GQKLFRR----------------NKDAKSLHSVIDSDGLPYVGQMIHPG-------EPYC 798
+ +K +++ID DGLP+ G+ + G P
Sbjct: 809 APPVVGGGGKGGGRHQRQGGSVADKHCSCRYAIIDEDGLPFSGEQVVDGGILINKVSPMS 868
Query: 799 SIYDKTTNSWRTN--SRKGSESVFVDYVAVDMKNSKNLPQKANIRF--RHTRNPIIGDKF 854
+ WR S K +VD V ++N Q + R TR P +GDKF
Sbjct: 869 DAATGQVSHWRDTPISYKNPVPSYVDRVIA----TENEDQAKIFKCITRQTRRPELGDKF 924
Query: 855 SSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
SSRHGQKGV + DMPF G G PDLI+NPH FPSRMT+ LLE V+ K
Sbjct: 925 SSRHGQKGVVGLIVNQEDMPF-GEKGWCPDLIMNPHGFPSRMTVGKLLECVSGK 977
>gi|25144348|ref|NP_498192.2| Protein RPC-2 [Caenorhabditis elegans]
gi|351060666|emb|CCD68383.1| Protein RPC-2 [Caenorhabditis elegans]
Length = 1154
Score = 249 bits (635), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 251/948 (26%), Positives = 413/948 (43%), Gaps = 133/948 (14%)
Query: 28 DEGLSEMFD-----HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRR 82
+EGL+ D CR ++Y+ + D+E Y V ++ G+ P+ML++ +
Sbjct: 90 EEGLNMTHDKITPQECRLRDMTYSAPISVDIE--YTRGNQRVFKKDLIIGRMPIMLRSSK 147
Query: 83 CHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGY 142
C L+ ++L ++E + GGYF++ G E+V IL ++ + + R+ +
Sbjct: 148 CILRDLAEEELARVQECPYDPGGYFVVKGSEKV----ILIQEQLSKNRIMVG-RNSSKEL 202
Query: 143 TDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIF 202
+ + RK ++ VT+K SVR +PV I+ KA+ +D +I
Sbjct: 203 QCEVLSSTSERKSKTYVTMKKGKY---SVRHNQLTDD----VPVSIIFKAMGVESDFDIV 255
Query: 203 NHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHI-----GEHFQP 257
+ T ++EKY VS + L E + + T+ Q L ++ F P
Sbjct: 256 S--TIGHEEKY-----------VSAFAQT-LEESINAGVYTQQQALAYVTSKVKARKFTP 301
Query: 258 VIDGLQSESYYAV-------AETVIRDYIFVHLNDNNDKFNL----LIFMLQKLFSLVDH 306
L S + A + + + H+ + F + L M ++L
Sbjct: 302 -FGSLPGTSVSVLTPPKEHEAVDFLSNSMITHIACPDGNFKMKAIYLGLMTRRLIQTELG 360
Query: 307 TSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANI 366
+ D+ D N+ + L G L+++ ++ + + + K+ I +N +I
Sbjct: 361 ENGLDDRDFYGNKRLELAGSLLSLLFEDVFKRFNSELKR-----IADNALMKTMAAPLDI 415
Query: 367 KKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHR 426
K M ++ I +I + TG + +R G T RL+++ + ++
Sbjct: 416 VKHMRQD---MITNTIVNAMSTGNWIIKRFR--MERLGVTQVLSRLSYISALGMMTRIN- 469
Query: 427 GASFAGLRTTS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDF 485
++F R S R L P WG LCP TP+GE CGL+ ++ + + D +
Sbjct: 470 -STFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALISHITTDSDEK------ 522
Query: 486 SKMRTSILRVLIGVGMIPSLPKLVKS--GPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRR 543
+LR+L+ G + L + S P + L+G ++G + + E+VV +R
Sbjct: 523 -----PVLRLLLNSG-VEDLHNVHFSHVNKPENTLIFLNGVLIGT--AVDPERVVKAVRD 574
Query: 544 LKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRP---VRNISLPSEESQNIEL 600
L+ S L +V +S +++ + + RP V+N P +++
Sbjct: 575 LRRSG-------LLSEFVSVSRSLTNRSVFISSDGGRLCRPYIIVKN-GTPMLTQAHVQE 626
Query: 601 IGPFEQVFMEIRCPDG----------GDG-----GRRNAFPATHEEIHPTGMLSVVANLT 645
+ + +F + DG D GR TH EI P +L V A L
Sbjct: 627 LKEGKMIFEDF-VDDGIVEYLDVNEMNDALIAVYGREIGPETTHLEIEPFTLLGVCAGLI 685
Query: 646 PYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDE 705
PY HNQSPRN YQC M KQ MG + R D +Y L PQ P+V++ T ++
Sbjct: 686 PYPHHNQSPRNTYQCAMGKQAMGTIAYNQQKRIDSIMYLLCYPQRPLVKSKTIELTNFEK 745
Query: 706 YPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKV-DR--G 762
P G N I+AV++Y+GYD+EDA++LNK+S+DRG +Y+ N+ DR G
Sbjct: 746 LPAGANGIIAVMSYSGYDIEDALVLNKASLDRGYGRCLVYKHVKGTAKKYPNQTFDRLLG 805
Query: 763 QKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGE-------PYCSIYDKTTNSWRTNSRKG 815
L + H +D +G+ + G I P + P S S N+ G
Sbjct: 806 PALDPNTRKPIFKHKNLDQEGIVFAGARIMPKQTIINKHMPVVSGESGPGASASANT-IG 864
Query: 816 SESVFVDYVAVDMKNSKNLPQKA---------------NIRFRHTRNPIIGDKFSSRHGQ 860
VDY V + P A + R TR P +GDKFSSRHGQ
Sbjct: 865 IAGRQVDYKDVSITYKTPTPSYAERVLLTYNEDEAHLFKVLLRQTRRPELGDKFSSRHGQ 924
Query: 861 KGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
KGVC + DMPF+ + GM PD+I+NPH +PSRMT+ L+E ++ K
Sbjct: 925 KGVCGLIAQQEDMPFNDL-GMVPDMIMNPHGYPSRMTVGKLMELLSGK 971
>gi|156538773|ref|XP_001607902.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Nasonia
vitripennis]
Length = 1175
Score = 249 bits (635), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 252/934 (26%), Positives = 401/934 (42%), Gaps = 112/934 (11%)
Query: 34 MFDHCRQAKISYTGKLMADVEFQYLDAG---SPVVRERFNFGQFPVMLKTRRCHLQGADS 90
M + R ++Y+ L D+ + G + ++ G+ P+ML+++ C L G
Sbjct: 109 MPNEARLRNLTYSAPLYVDITKTVIKEGEEPTETQHQKTFIGKIPIMLRSKYCLLAGLSD 168
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
+ L L E + GGYFI+NG E+V +I ++ ++ S +D + Y KA +
Sbjct: 169 RDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFSIKDGKYAY--KAEIRS 223
Query: 151 CVRKDQSSV-TLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
C+ V TL + + + G+ + +P+ IV +AL D +
Sbjct: 224 CLEHSSRPVSTLWINMMSKSGAAIKKSAIGQRIIAILPYIRQEIPIMIVFRALGFVADRD 283
Query: 201 IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
I H+ +D+ P + E VK L E + + L IG +
Sbjct: 284 ILEHIIYDFDD-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGS--RGARP 328
Query: 261 GLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
G+ E A +++ H+ ++ K L +M+ +L S D+ D
Sbjct: 329 GVTKERRIKYAREILQKETLPHVGVSDFCETKKAYFLGYMVHRLLSASLGRRELDDRDHY 388
Query: 317 QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
N+ + L G L+ + ++ +++ + Q I + GK F+ LA IK +K
Sbjct: 389 GNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFI-DRGKDFN-LELA-IK-------TK 438
Query: 377 QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
I + L TG Q Q RAG + RL F +S R V+ G +
Sbjct: 439 IITDGLRYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRVNSPIGRDG-KLA 496
Query: 437 SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
R+L WG LCP TP+G+ GL+ ++ ++ + IL L
Sbjct: 497 RPRQLHNTLWGMLCPAETPEGQAVGLVKNLALMAYIS-----------VGSQPSPILEFL 545
Query: 497 IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAAS 550
M +L ++ S + ++G VG+ + ++++A LR+L+ VS S
Sbjct: 546 EEWSM-ENLEEIAPSAIADATKIFVNGCWVGI--HRDPDQLMATLRKLRRQMDIIVSEVS 602
Query: 551 VIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN------------I 598
++ D + + G L + R+I + E N +
Sbjct: 603 MVRDIRDREIRIYTDAGRISRPLLIVENQLLLLKKRHIEMLKERDYNNDGWQELVSQGVV 662
Query: 599 ELIGPF-EQVFMEIRCPDGGDGGRRNAFPA--THEEIHPTGMLSVVANLTPYSDHNQSPR 655
E I E+ M P+ + A+ TH EIHP +L V A++ P+ DHNQSPR
Sbjct: 663 EYIDTLEEETVMIAMSPEDLRQEKEYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPR 722
Query: 656 NMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVA 715
N YQ M KQ MG + R D + L P P+V T + E P G N+IVA
Sbjct: 723 NTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVA 782
Query: 716 VLAYTGYDMEDAMILNKSSVDRGMCHGQIYQ----TETI---DLSDDGNKVDRGQKLFRR 768
+L YTGY+ ED++ILN S+V+RG Y+ +ET D+ + K +R R
Sbjct: 783 ILCYTGYNQEDSIILNTSAVERGFFRSVFYRSYKDSETKRLGDVEEQFEKPNRQTCQGMR 842
Query: 769 NKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIY--------DKTTNSWRTNSR------K 814
N +++ +D DG+ G + + D +++ R R +
Sbjct: 843 N----AIYDKLDEDGIISPGIRVSGDDVIIGKTMTLPETDDDLDSSTKRFTKRDASTFLR 898
Query: 815 GSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMP 874
SE+ VD V + + NS+ + IR R R P IGDKF+SRHGQKG C + DMP
Sbjct: 899 NSETGIVDQVMLTL-NSEGY-KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMP 956
Query: 875 FSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
F+ GM PD+IINPHA PSRMTI L+E + K
Sbjct: 957 FT-CEGMTPDIIINPHAIPSRMTIGHLIECIQGK 989
>gi|324120646|dbj|BAJ78714.1| RNA polymerase II second largest subunit [Gynaikothrips ficorum]
Length = 1150
Score = 249 bits (635), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 248/930 (26%), Positives = 404/930 (43%), Gaps = 104/930 (11%)
Query: 34 MFDHCRQAKISYTGKLMADVEFQYLDAGSPVV---RERFNFGQFPVMLKTRRCHLQGADS 90
M + R ++Y+ L D+ + G V + G+ P+ML++ C L G
Sbjct: 84 MPNEARLRNLTYSAPLYVDITKTIIREGEDQVVTQNPKTFIGKIPIMLRSTYCLLNGLTD 143
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
+ L L E + GGYFI+NG E+V +I ++ ++ + +D + Y K+ +
Sbjct: 144 RDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFAMKDGKFAY--KSEIRS 198
Query: 151 CVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
C+ + + TL + + G + G+ + +P+ IV +AL D +
Sbjct: 199 CLEHSSRPTSTLWVNMMARGGQSIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRD 258
Query: 201 IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
I H+ +D+ P + E VK L E + + L IG +
Sbjct: 259 ILEHIIYDFDD-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGA--RGARP 303
Query: 261 GLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
G+ E A+ +++ + H+ ++ K L +M+ +L D+ D
Sbjct: 304 GVTKEKRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 363
Query: 317 QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
N+ + L G L+ + ++ +++ + Q I+ GK F+ LA IK +K
Sbjct: 364 GNKRLDLAGPLLAFLFRALFKNLMKEVRMYAQKFIDR-GKDFNL-ELA-IK-------TK 413
Query: 377 QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
I + L TG Q + RAG + RL F +S R V+ G +
Sbjct: 414 IITDGLRYSLATGNWGDQKKAHMA-RAGVSQVLNRLTFASTLSHLRRVNSPIGRDG-KLA 471
Query: 437 SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
R+L WG +CP TP+G GL+ ++ ++ + IL L
Sbjct: 472 KPRQLHNTLWGMVCPAETPEGAAVGLVKNLALMAYIS-----------VGSQPSPILEFL 520
Query: 497 IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAAS 550
M +L ++ S + ++G VG+ + E+++A LR+L+ VS S
Sbjct: 521 EEWSM-ENLEEIAPSAIADATKIFVNGCWVGI--HRDPEQLMATLRKLRRQMDIIVSEVS 577
Query: 551 VIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN------------I 598
+I D + + G L + + RNI E N +
Sbjct: 578 MIRDIRDREIRIYTDAGRICRPLLIVENGQLLLKKRNIDQLKERDYNNYGWQMLVASGVV 637
Query: 599 ELIGPFEQ-VFMEIRCPDGGDGGRRNAFPAT--HEEIHPTGMLSVVANLTPYSDHNQSPR 655
E I E+ M PD + + A+ T H EIHP +L V A++ P+ DHNQSPR
Sbjct: 638 EYIDTLEEETVMIAMSPDDLNQDKEYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPR 697
Query: 656 NMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVA 715
N YQ M KQ MG + R D + L P P+V T + E P G N+IVA
Sbjct: 698 NTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVA 757
Query: 716 VLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT-ETIDLSDDGNKVDRGQKLFRRNKDA-- 772
+L YTGY+ ED++ILN ++V+RG Y++ + + G++ ++ +K R N
Sbjct: 758 ILCYTGYNQEDSVILNATAVERGFFRSVFYRSYKDAESKRIGDQEEQFEKPNRSNCQGMR 817
Query: 773 KSLHSVIDSDGL-----------PYVGQMIHPGEPYCSIYDKTTNSWRTNSR---KGSES 818
+L+ +D DG+ +G+ I E + T + ++ + SE+
Sbjct: 818 NALYDKLDDDGIIAPGLRVSGDDVVIGKTITLPETDDELEGTTRRHTKRDASTFLRNSET 877
Query: 819 VFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGV 878
VD V + + NS+ + IR R R P IGDKF+SRHGQKG C + DMPF+
Sbjct: 878 GIVDQVMLTL-NSEGY-KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFT-C 934
Query: 879 TGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
G+ PD+IINPHA PSRMTI L+E + K
Sbjct: 935 EGLTPDIIINPHAIPSRMTIGHLIECLQGK 964
>gi|269859858|ref|XP_002649653.1| DNA-directed RNA polymerases I, II, and III, subunit 2
[Enterocytozoon bieneusi H348]
gi|220067016|gb|EED44485.1| DNA-directed RNA polymerases I, II, and III, subunit 2
[Enterocytozoon bieneusi H348]
Length = 1107
Score = 248 bits (634), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 242/987 (24%), Positives = 422/987 (42%), Gaps = 187/987 (18%)
Query: 13 RELVRHHIESFDYMLDEGLSEMFD------------------------------------ 36
+ LVR HIESF+Y +++ + E+
Sbjct: 15 KNLVRQHIESFNYFIEKEIKEIVQANDIIDSDIDRNFYLRYLNIRVEKPTMIENMVEQII 74
Query: 37 ---HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHL-------- 85
CR I+Y G + D+E Y+ ++++ + G+ P+M+++ +CHL
Sbjct: 75 YPQECRIRDITYAGNIYVDIE--YIKNKEVIIKKNISMGKMPIMIRSSKCHLTTHMLNSK 132
Query: 86 --QGADSQKLVSLKEEAA--EMGGYFILNGLERVF---------RSVI-LPKQNYPMSMV 131
+ L++ K + + GGYFI+ G+E+V R +I + K SM
Sbjct: 133 IIMNERQKNLINYKTQECIYDNGGYFIIKGVEKVIHIQEQQSKNRIIIEMGKNGLYTSMT 192
Query: 132 RSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYL--LPVGIV 189
SS + K++++V K F++Q ++ +P+ +V
Sbjct: 193 SSSIK----------------HKNKTNVIYK---------NDKFYIQNTIFIEDVPIVLV 227
Query: 190 LKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQ 249
LK L D EI +++ G G L+ ++ EV + + T L
Sbjct: 228 LKTLGLNTDEEIVSYI------------GKEGVELM----ELSFGEVYEKDIYTETDALI 271
Query: 250 HIGEHFQPVIDGLQSESYYAV-AETVIRDYIFVHLNDNNDKFN---LLIFMLQKLFSLVD 305
+ + + L+S+ + ++++ + +F ++ ++D N L M++KL
Sbjct: 272 ELSKFIK-----LKSDDNKEIKVKSILAEKLFPNIKIDDDLKNKGICLCLMIRKLILAKQ 326
Query: 306 HTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDW---LRKG-KKLIQDEIENNGKKFD-- 359
+ D+ D L N+ L G L++I ++ + + L+K K++ I N +FD
Sbjct: 327 NLLKPDDKDYLGNKRFELAGQLLSILFEDTFKKFNFELKKSIDKILSKRIRTN--EFDAL 384
Query: 360 -FFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFI 418
FFNL + I T++ + +G + +R+G T R +++ +
Sbjct: 385 TFFNLQ----------TGSITTTLSRAISSGNWNLKRFK--MERSGVTHVLTRYSYITAL 432
Query: 419 SFFRAVHRGASFAGLRTTS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYD 477
++ + F R S R L P SWG CP TP+GE CGL+ ++ +++ D
Sbjct: 433 GMMTKIN--SHFEKTRKVSGPRSLHPSSWGMFCPADTPEGESCGLVKNLALLTEISTESD 490
Query: 478 SRGNIRDFSKMRTSILRVLIGVGMIP-SLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEK 536
S I +L +G+I + + V ++G + G+ +S IE
Sbjct: 491 S-----------DIIKNILQTLGVIKLKFCQESEFYAKNKFMVFINGELFGL--TSNIEY 537
Query: 537 VVAHLRRLKVSA-----ASVIPDDLEVG-YVPLSLGGAYPGLYLFTSPPKFVR----PVR 586
+ +R+++ S+ + LE Y+ G L + F
Sbjct: 538 LCCAIRKIRREGKINKFVSIFHNKLENAIYISTDNGRICRPLIIIKKNSNFFTNYQFQCN 597
Query: 587 NISLPSEESQNIELIGPFEQVFMEIRCPDG---GDGGRRNAFPATHEEIHPTGMLSVVAN 643
I S +E + + V E C + N TH EI +LS++A
Sbjct: 598 KIKYKSFNDLLLEGLIEYVDVNEENDCLIALHKSNINNLNIENYTHLEIADYSILSLIAG 657
Query: 644 LTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGI 703
L P+ HNQSPRN YQC M KQ +G +K R D + L Q P+ +
Sbjct: 658 LIPFPHHNQSPRNTYQCAMGKQAIGHIGTNIKKRFDLLMLQLNYTQRPLSCSKILDINKY 717
Query: 704 DEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQ 763
++ P G NA+VAV++Y+GYD+EDA+I+NK S++RG ++Y+T I+
Sbjct: 718 NKIPAGINAMVAVMSYSGYDIEDAIIVNKDSIERGFMRVEVYKTIKIE------------ 765
Query: 764 KLFRR--NKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFV 821
F R N + ++ V + + VG + G+ + +T KG ++
Sbjct: 766 --FERFTNGKTEEIYIVNGKEQIIEVGTHVMDGDILITKVSPIDKKLKTVKYKGHPG-YI 822
Query: 822 DYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGM 881
D + + + + + I+ R TR IGDKFSSRHGQKGV + P +D+PF+ G+
Sbjct: 823 DTIILSKGDDDKILK---IKVRETRCVEIGDKFSSRHGQKGVVGLIVPQVDLPFNEY-GV 878
Query: 882 RPDLIINPHAFPSRMTIAMLLESVAAK 908
PD+I+NPH FPSRMT+ +LE + +K
Sbjct: 879 CPDIIMNPHGFPSRMTVGKILELIGSK 905
>gi|384253175|gb|EIE26650.1| DNA-directed RNA polymerase III, subunit 2 [Coccomyxa
subellipsoidea C-169]
Length = 1170
Score = 248 bits (634), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 258/1003 (25%), Positives = 414/1003 (41%), Gaps = 176/1003 (17%)
Query: 9 FEPLRELVRHHIESFDYMLDEGLSEMF--------------------------------- 35
F +R LV+ HI+SF+Y +++ + ++
Sbjct: 49 FLKVRGLVKQHIDSFNYFINQEIKKIVHAKGNEKVTCDTDPNFFFKYTDIFVGRPQVEED 108
Query: 36 --------DHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFN------FGQFPVMLKTR 81
CR ++Y + DVE Y VVR+ N G+ P+ML++
Sbjct: 109 YITTGITPQACRLRDMTYAAPISVDVE--YTRGKEIVVRKGKNGVGAVVIGRMPLMLRSD 166
Query: 82 RCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREG 141
RC L+G +L L E + GGYF++ G E+V IL ++ + + D +
Sbjct: 167 RCVLKGKSEAQLAELGECPLDPGGYFVVKGAEKV----ILIQEQLSKNRIIIDL-DSKGQ 221
Query: 142 YTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLG-FWLQGKEYLLPVGIV--LKALVDTND 198
T RK ++++ L R G L+ + V +V L+A+ +D
Sbjct: 222 VTASVTSSTHERKSKTNIVLG---------RKGQLCLRHNAFTEDVNMVAVLRAMGVESD 272
Query: 199 LEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQP- 257
EI + C P ++ + L E + + L R Q L+++G +
Sbjct: 273 QEILALVGC--------------EPGLAALLAPTLQEAKAMGLFIRQQALEYLGSRVKAG 318
Query: 258 --VIDGLQSESYYAVAETVIRDYIFVHLN----DNNDKFNLLIFMLQKLFSLVDHTSVSD 311
+S S A ++ + + H+ D K + M++++ + + +++ D
Sbjct: 319 KQQYSSRRSRSKVDEARDILANVVVCHIPVPQYDFQQKVIYMAVMMRRMIAAMLDSTLID 378
Query: 312 NPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVME 371
+ D N+ + L G L+ + ++ + + K+ + + + F N+ M
Sbjct: 379 DRDYYGNKRLELAGGLLALLFEDLFKRMNNELKRTADNTLSKANRASQFDAAKNLHVEM- 437
Query: 372 KNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFA 431
I +E+ + +G + +R G T RL+F+ + + + F
Sbjct: 438 ------ISQGMESAISSGNWTIRR--FRMERKGVTQVLSRLSFIAALGMMTRIT--SQFE 487
Query: 432 GLRTTS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRT 490
R S R L P WG LCP TP+GE CGL+ ++ V + D +
Sbjct: 488 KTRKVSGPRALQPSQWGMLCPADTPEGESCGLVKNLALMTHVTT---------DEEEAPL 538
Query: 491 SILRVLIGVGMIPSLPKLVKSG----PPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKV 546
+ L L+G + P + SG V V L+G ++G+ +++V RRL+
Sbjct: 539 ARLAHLLG-----TQPATLVSGFEYSSRGVAMVFLNGSILGI--HRRPKRLVKEFRRLRR 591
Query: 547 SAASVIPDDLEVG-YVPLSLGGAYPGLYLFTSPPKFVRP--VRNISLPSEESQNIELIGP 603
+ VG +V + L +Y+ + + RP + + +P S + +
Sbjct: 592 AG--------RVGEFVSIFL--QQDSVYIASDGGRVCRPLIICDRGVPRVTSAHTAKLKS 641
Query: 604 FEQVFME------IRCPDGGDGG--------RRNAFPATHEEIHPTGMLSVVANLTPYSD 649
E F + + D + R TH EI P +L VVA L PY
Sbjct: 642 GEWGFSDFLRNGLVEYLDVNEENNALIALYERNCGVATTHLEIEPFTVLGVVAGLIPYPH 701
Query: 650 HNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTG 709
HNQSPRN YQC M KQ MG D LY L PQ P++ T T G D+ G
Sbjct: 702 HNQSPRNTYQCAMGKQAMGNIAYNQLNVMDTLLYLLVYPQRPLLTTKTIELVGFDKLGAG 761
Query: 710 TNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDR---GQKLF 766
NA VAV++Y+GYD+EDA+I+N++S+DRG + + L N+ L
Sbjct: 762 QNATVAVMSYSGYDIEDAIIMNRASLDRGFGRCIVLRKYGTVLKKHQNRSQDTVVAAPLP 821
Query: 767 RRNKDAKSLHSVIDSDGLPYVGQMIHPGE---------------PYC------SIYDKTT 805
H ++D DGL G++ PGE P+ S Y
Sbjct: 822 PGQSKPTGRHKLLDEDGLAAPGEIASPGEILINKQVPMSTKDPLPHGMVSLPPSAYKPAP 881
Query: 806 NSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCS 865
SW+ ES VD V + N+ + RHTR P +GDKFSSRHGQKGV
Sbjct: 882 VSWKGPP---GESCIVDKVL--LTNNDDGHTVIKTLMRHTRRPEVGDKFSSRHGQKGVVG 936
Query: 866 QLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
+ DMPFS G+ PDLI+NPH FPSRMT+ +LE + +K
Sbjct: 937 SIVAQEDMPFS-ERGICPDLIMNPHGFPSRMTVGKMLELIGSK 978
>gi|300709367|ref|XP_002996849.1| hypothetical protein NCER_100041 [Nosema ceranae BRL01]
gi|239606175|gb|EEQ83178.1| hypothetical protein NCER_100041 [Nosema ceranae BRL01]
Length = 1091
Score = 248 bits (633), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 246/978 (25%), Positives = 420/978 (42%), Gaps = 168/978 (17%)
Query: 15 LVRHHIESFDYMLDEGLSEM----------FDH--------------------------- 37
L R HIESF+Y ++ ++ + DH
Sbjct: 19 LARQHIESFNYFINHEIASIVKANDIVDSDIDHTFYLKYTDVRISVPSLEENMIKHTLYP 78
Query: 38 --CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNF-GQFPVMLKTRRCHLQGADSQKLV 94
CR ++Y L D+E+ ++R++ F G+ P+ML++ +C L+ ++++ +
Sbjct: 79 MECRLRDLTYASNLYIDIEYV---RNKQIIRKKDVFIGRIPIMLQSDKCLLKSKNNEQKL 135
Query: 95 SLKEEAA----------EMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTD 144
S + A ++GGYFI+ G+E+V +++ +Q +S R D +G+
Sbjct: 136 SEESLNANLFFSQECPYDIGGYFIIKGIEKV---ILIQEQ---LSKNRIIIEDGPKGFFS 189
Query: 145 KAVVIRCVRKDQSSVTLK--LYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIF 202
+K ++SV K YYL+N S +PV ++KA +D EI
Sbjct: 190 SMTSSTHEQKSKTSVIYKNDCYYLVNSSFSED---------IPVVAIIKACNMISDKEIV 240
Query: 203 NHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGE--HFQPVID 260
C +++ ++++ + E+ + T + ++ +P +
Sbjct: 241 E----CIGKEF------------ADQIVLSFEEIYKHKIHTSKEAALYLAGFIKMKPDAN 284
Query: 261 GLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQE 320
L+ E + E ++ + F + D +K ++ M+++L + ++ D + N+
Sbjct: 285 KLE-EVRNVIVEKILPNVKFDGV-DLRNKGIMICLMVRRLIFTQKNIITEEDKDFIGNKR 342
Query: 321 ILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENN--GKKFD---FFNLANIKKVMEKNPS 375
L G L++I ++ + + + K+ I + ++FD FFNL +
Sbjct: 343 FELAGQLLSILFEDSFKKFNWELKRSIDKILTKRLRAQEFDALTFFNLQ----------T 392
Query: 376 KQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRT 435
I TS++ + +G + R+G T R +++ + V+ + F R
Sbjct: 393 NIITTSMQRAISSGNWNLRRFR--MDRSGVTHVLIRHSYISAVGMMTKVN--SHFEKTRK 448
Query: 436 TS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILR 494
S R L SWG CP TP+GE CGL+ +++ V + D I S +
Sbjct: 449 VSGPRALHTSSWGMFCPADTPEGESCGLVKNLSLLAEVTTDSDLDTIIYILSSLGVIQTG 508
Query: 495 VLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPD 554
VL M+ LV L+G + GV + +V + R + VI
Sbjct: 509 VLYTHEMVSDEMYLV----------FLNGDIFGV--TQNCFGLVKNFRNYR--RKGVINK 554
Query: 555 DLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIE----LIGPFEQVFME 610
YV + + + + + RP+ I + E QN++ +I E +
Sbjct: 555 -----YVSIYIDENLKSVNIAADNGRLCRPL--IIITDEVRQNLKKGLFVISDLEMKYKS 607
Query: 611 IRCPDGGDGGRRNAFPA-------------------THEEIHPTGMLSVVANLTPYSDHN 651
D + GR A TH EI +L VA L P+ +HN
Sbjct: 608 F--DDLVEDGRIEYLDANEENDALIALKIEDISDKTTHLEIADFAILGYVAGLIPFPNHN 665
Query: 652 QSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTN 711
QSPRN YQC M KQ +G+ K R D L Q P+ T +E P G N
Sbjct: 666 QSPRNTYQCAMGKQAIGYIALNSKKRFDGISLQLCNTQKPLTTTQILNITDYNEIPAGQN 725
Query: 712 AIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKD 771
A+VAV++Y+GYD+EDA+I+NK S+DRG ++Y+T L + +R + K+
Sbjct: 726 AMVAVMSYSGYDIEDALIINKDSLDRGFARTEVYKTHCYVLKKYSD--NRSDVILPDIKN 783
Query: 772 AKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWR-TNSRKGSESVFVDYVAVDMKN 830
++D DG+ G+++ G Y + N ++ T F+D V +
Sbjct: 784 P-----ILDKDGIGKPGELLLEGTVYINKNSPCENGYKFTGGVHKGNPAFIDRVLITKSE 838
Query: 831 SKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPH 890
+ L + I R TR P IGDKFSSRHGQKGV + P I+MPF+ +G+ PD+I+NPH
Sbjct: 839 DQTLIK---ICLRQTRVPEIGDKFSSRHGQKGVVGLIVPQINMPFTD-SGLVPDIIMNPH 894
Query: 891 AFPSRMTIAMLLESVAAK 908
FPSRMT+ ++E + K
Sbjct: 895 GFPSRMTVGKIIELLTGK 912
>gi|118358942|ref|XP_001012712.1| DNA-directed RNA polymerase, beta subunit family protein
[Tetrahymena thermophila]
gi|89294479|gb|EAR92467.1| DNA-directed RNA polymerase, beta subunit family protein
[Tetrahymena thermophila SB210]
Length = 1141
Score = 248 bits (633), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 262/1025 (25%), Positives = 427/1025 (41%), Gaps = 194/1025 (18%)
Query: 6 SADFEPLRE-------------LVRHHIESFDYMLDEGLSEMF----------------- 35
S EPLRE V HHI+SF+Y ++ L ++
Sbjct: 3 SKTAEPLREKTRIIDSYLAHNGFVSHHIQSFNYFINIKLQQIITSSMNKELRLDTDNSFL 62
Query: 36 ---------------------DHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQF 74
R + SY G + D E + +R + N G+
Sbjct: 63 LEYTKIYIEPPAHDNKTMMLPQEARLSNSSYAGNIYVDCELTFNGKKEDSLR-KVNIGKM 121
Query: 75 PVMLKTRRCHL-QGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRS 133
P+ML + C+L + + ++ L+E A + GYFI+ G+E+VF +++
Sbjct: 122 PIMLGSSHCNLIKALELGQVHKLQECANDPRGYFIIKGVEKVF-------------LIQE 168
Query: 134 SFRDRR---EGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVL 190
D R E +K +V K + T + L+ + ++ + +P+ I
Sbjct: 169 QLADNRIFIEEDKNKELVANV--KSNTVDTKSITSLIIKNHKIYVKVSSFSKPIPLLIFF 226
Query: 191 KALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQH 250
KA ++ EIF + E++ + R+ + L +++ + T+ Q L++
Sbjct: 227 KAYGVESEQEIFQLIGT---EEH-----------LLNRLALCLEDIEQSQVYTQQQALEY 272
Query: 251 IGEHFQPVIDGLQSESYYA-----VAETVIRDYIFVHLNDNNDKFN----LLIFMLQKLF 301
+ + +P Q + Y + A +I + + H+ N + L M ++L
Sbjct: 273 LSKRLRP--KTFQDKKYSSRNPVDEARDIITNVVLCHIPCKNYNYYPRAIFLGLMARRLI 330
Query: 302 SLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFF 361
+D S D D N+ + G + + ++K + + +K + EIE +
Sbjct: 331 EALDDPSKIDKRDYYGNKRMKCAGWYLELLFEDKFKQFNMMVRKELSKEIEKH------- 383
Query: 362 NLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAG-YTVQAERLN------F 414
KN S I +E++L+ GL+ G +T++ R++
Sbjct: 384 ----------KNKSYPIKNRVESILEKNHDIITQGLNNAISTGNWTIKRFRMDTVGVTQV 433
Query: 415 LRFISFFRAV----HRGASFAGLRT-TSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTST 469
L IS+ A+ + F R T R LL WG +CP TPDGE CGL +++
Sbjct: 434 LARISYIAAIGMMTRMNSQFKKSRKLTGPRSLLGSHWGLVCPADTPDGESCGLTKNLSLM 493
Query: 470 CRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGP---PAVLSVLLDGRVV 526
+ + + N+ S + + +G+ I SG V L+G+++
Sbjct: 494 AHIT--IEEKKNV-------LSTIALNLGMEDIGHYS----SGEIHEDKNYMVFLNGQII 540
Query: 527 GV--IPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLG-GAYPGLYLFTSPPKFVR 583
G+ P + +K+ RR K+ I + E V L G L + K +
Sbjct: 541 GMHRDPEAFAQKLRFMRRRGKIGTTISISTNSEKRAVYLDTDDGRLCRLLIVVENGKPLI 600
Query: 584 PVRNISLPSEESQN---------IELIGPFEQ--VFMEIRCPDGGDGGRRNAFPATHEEI 632
+++ E+ ++ IE I E+ ++ I+ D N TH EI
Sbjct: 601 TNDHLNDLKEKRKSYLDLIRMGLIEYIDVNEEDNCYIAIKQED-----IPNRSKTTHMEI 655
Query: 633 HPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPI 692
P +L VV+ L PY HNQ+ RN +QC M KQ +G R D LY L PQTP+
Sbjct: 656 DPLTLLGVVSGLVPYPHHNQASRNTFQCAMGKQALGIIGSTSMNRVDTILYQLIYPQTPL 715
Query: 693 VRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQI---YQTET 749
++T G D++P G NA +AVL+Y+GYD+EDA +LNKSS+DRG + Y+TE
Sbjct: 716 LKTKVIEYAGYDKFPAGHNASIAVLSYSGYDIEDATVLNKSSLDRGFGRTMVFKKYETEI 775
Query: 750 IDLSDDG--------NKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIY 801
L G K G ++N+ K +D DG P VG I+ G+ ++
Sbjct: 776 QKLKMSGLTELLRGPPKEAEGSYKKKQNRVLKKF-GALDDDGTPIVGASINNGD---VLF 831
Query: 802 DKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRF------------------R 843
+K T ++G + + + V+ + N K R R
Sbjct: 832 NKYTPLLTLEQQRGRDILNNNSVSEYIHNPTTFKGKKLARIDRVIRSQQDGNVIIKTIVR 891
Query: 844 HTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLE 903
TR P GDKFSSRHGQKG+ + DMPFS G PDLI+NPH +PSRMT+ LLE
Sbjct: 892 ETRRPEYGDKFSSRHGQKGIIGLIVNQEDMPFSE-KGWVPDLIMNPHGYPSRMTVGKLLE 950
Query: 904 SVAAK 908
+ +K
Sbjct: 951 LLGSK 955
>gi|162606010|ref|XP_001713520.1| DNA-directed RNA polymerase II second largest subunit [Guillardia
theta]
gi|13794440|gb|AAK39815.1|AF165818_23 DNA-directed RNA polymerase II second largest subunit [Guillardia
theta]
Length = 1206
Score = 248 bits (633), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 256/998 (25%), Positives = 425/998 (42%), Gaps = 163/998 (16%)
Query: 19 HIESFDYMLDEGLSEMF--DHCRQAKISYTGKLMADVEFQYLDAGSPV------VRERFN 70
H+ Y+ D+GL + R ++Y+ L ++ + + E+
Sbjct: 77 HLSKPTYIEDDGLVHNLVPNEARLRNLTYSSPLYCEISTSIIKNEKSIDYILKQFSEKIL 136
Query: 71 FGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERV--------FRSVILP 122
G+ P+M+K++ C L D + L +L E + GGYFI+NG E+V + V +
Sbjct: 137 IGRIPIMIKSKFCILSNLDIKCLKNLGECPDDPGGYFIVNGSEKVIVAQEQLSWNKVYIF 196
Query: 123 KQNYPMSMVRSSFRDRR---EGYTDKA------------------VVIRCVRKDQSSVTL 161
++N +R++ + + EGY A V C KDQ
Sbjct: 197 QKN---ENLRNTIKIKNYTVEGYLYFAECRSVADYSKWSPSLLTVKVCLCPYKDQKFSIF 253
Query: 162 KLYYLLNGSVRLGFWLQGKEYL----------LPVGIVLKALVDTNDLEIFNHLTCCYDE 211
K N +L G YL +P+ + KAL N++EI +++ CYD
Sbjct: 254 KKNLKFNSP---EIFLSGGFYLRMMLPYFKKDIPITWIFKALGFENEIEILDYI--CYDS 308
Query: 212 KYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVA 271
+ + V + +++ + + + L IG+H G++ + Y V
Sbjct: 309 QDEDLISIVRYIVEDDKISTQNSLSISCPILDQETALAAIGQHVSKGPQGIRIKFAYEVL 368
Query: 272 ETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIY 331
+ +I + K +++ KL S D+ D + + G L++
Sbjct: 369 QKEFLPHIGIGQGFELRKGYFFGYIINKLISTQIGKRKMDDRDHYGYKRLDTVGPLLSQL 428
Query: 332 LKEKLEDWLRKGKKLIQDEIENNGKKF---DFFNLANIKKVMEKNPSKQIGTSIETMLKT 388
++ L L++ K +Q +I KKF DFF S + T I+ L T
Sbjct: 429 FRQLLGKVLKEFKTNVQKKIHRLDKKFELKDFFK------------SNYVTTGIQYALST 476
Query: 389 GRLATQTGLDLQQ-RAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWG 447
G T D Q R G + RL++ +S R V+ S G + T R L WG
Sbjct: 477 GNWGT----DKQSLRTGISQVLNRLSYSSTLSHLRRVN-SPSAKGNKITKPRHLHNSHWG 531
Query: 448 FLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTS---ILRVLIGVGMIPS 504
++CPV TP+G CGL+ ++ T + + TS I+ L +G+ S
Sbjct: 532 YICPVETPEGHSCGLVKNLALTAMIT--------------IGTSPLFIIEKLENLGL-ES 576
Query: 505 LPKLVKSGPPAVLSVLLDGRVVGV--IPSSEIEKVVAHLRRLKVSAA-SVIPDDLEVGYV 561
L + + V ++G +G P + I K+ + RR S S+I DD +
Sbjct: 577 LEEYNSDKLKSSFKVFVNGCWIGTHKNPFALISKMKIYRRRNIFSEEISIILDDYD---- 632
Query: 562 PLSLGGAYPGLYLFTSPPKFVRPVRNI----------------SLPSEESQNIELIGPFE 605
+ +F+ + +RP+ I +L ++S E
Sbjct: 633 --------KEIKIFSDSGRVIRPLLIINEENIIKINNKQKYLHNLTDDQSIYSNFQQLLE 684
Query: 606 QVFMEIRCPDGGDGGRRNAF--------------PATHEEIHPTGMLSVVANLTPYSDHN 651
+ +E P+ + + F TH E+HP+ +L V A+L P+ DHN
Sbjct: 685 EGILEYVDPEEEETCLISMFYNFKYLKNLHTQKIKYTHCELHPSVILGVCASLIPFCDHN 744
Query: 652 QSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTN 711
QSPRN YQ M KQ +G +V FR D + L PQ P+V T + ++P G N
Sbjct: 745 QSPRNTYQAAMGKQAIGINVSNYDFRMDTMCHILYYPQKPLVCTKSMNFIKFKDFPNGIN 804
Query: 712 AIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT-ETIDLSDDGNKVDRGQKLFRRNK 770
AIVA+ Y GY+ ED++I+++ S+DRG+ ++ + ++ G K + + ++
Sbjct: 805 AIVAIACYGGYNQEDSIIMSQDSIDRGLFRSFFFRNYKDVEKIKFGGKKETFEIPNWKSC 864
Query: 771 DAKSLHSV--IDSDGLPYVGQMIHPGE----PYC--SIYDKTTNSWR------------T 810
+ +HS +D DGL G+ ++ + C +++D R +
Sbjct: 865 NGIKIHSYEKLDLDGLIGEGKKVNSNDIIIGKTCPTNLFDNNNEDLRLLGKNLKIKTDCS 924
Query: 811 NSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPD 870
+S K E+ VD V + S + IR R R P IGDKF+SRHGQKG+ ++
Sbjct: 925 SSIKNFETGVVDKVI--LAKSDEGFRLVKIRIRSVRLPQIGDKFASRHGQKGIIGMIYRQ 982
Query: 871 IDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
++MPFS G+ PD+I+NPHA PSRMTI LLE + +K
Sbjct: 983 VNMPFSE-QGISPDIIMNPHAIPSRMTIGHLLECLLSK 1019
>gi|324120644|dbj|BAJ78713.1| RNA polymerase II second largest subunit [Thrips palmi]
Length = 1150
Score = 248 bits (633), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 248/930 (26%), Positives = 403/930 (43%), Gaps = 104/930 (11%)
Query: 34 MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVR---ERFNFGQFPVMLKTRRCHLQGADS 90
M + R ++Y+ L D+ + G + ++ G+ P+ML++ C L G
Sbjct: 84 MPNEARLRNLTYSAPLYVDITKTIVKEGEEPIETQHQKTFIGKIPIMLRSTYCLLNGLTD 143
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
+ L L E + GGYFI+NG E+V +I ++ ++ S +D + Y K +
Sbjct: 144 RDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFSMKDGKFAY--KCEIRS 198
Query: 151 CVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
C+ + + TL + + G + G+ + +P+ IV +AL D +
Sbjct: 199 CLEHSSRPTSTLWVNMMARGGQSIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRD 258
Query: 201 IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
I H+ +D+ P + E VK L E + + L IG +
Sbjct: 259 ILEHIIYDFDD-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGA--RGARP 303
Query: 261 GLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
G+ E A+ +++ + H+ ++ K L +M+ +L D+ D
Sbjct: 304 GVTKEKRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 363
Query: 317 QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
N+ + L G L+ + ++ +++ + Q I+ GK F+ LA IK +K
Sbjct: 364 GNKRLDLAGPLLAFLFRALFKNLMKEVRMYAQKFIDR-GKDFNL-ELA-IK-------TK 413
Query: 377 QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
I + L TG Q L RAG + RL F +S R V+ G +
Sbjct: 414 IITDGLRYSLATGNWGDQKKAHLA-RAGVSQVLNRLTFASTLSHLRRVNSPIGRDG-KLA 471
Query: 437 SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
R+L WG +CP TP+G GL+ ++ ++ + IL L
Sbjct: 472 KPRQLHNTLWGMVCPAETPEGAAVGLVKNLALMAYIS-----------VGSQPSPILEFL 520
Query: 497 IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAAS 550
M +L ++ S + ++G VG+ + E+++A LR+L+ VS S
Sbjct: 521 EEWSM-ENLEEIAPSAIADATKIFVNGCWVGI--HRDPEQLMATLRKLRRQMDIIVSEVS 577
Query: 551 VIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN------------I 598
+I D + + G L + + RNI E N +
Sbjct: 578 MIRDIRDREIRIYTDAGRICRPLLIVENGQLLLKKRNIDQLKERDYNNYGWQMLVASGVV 637
Query: 599 ELIGPFEQ-VFMEIRCPDGGDGGRRNAFPAT--HEEIHPTGMLSVVANLTPYSDHNQSPR 655
E I E+ M PD + A+ T H EIHP +L V A++ P+ DHNQSPR
Sbjct: 638 EYIDTLEEETVMIAMSPDDLRQDKEYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPR 697
Query: 656 NMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVA 715
N YQ M KQ MG + R D + L P P+V T + E P G N+IVA
Sbjct: 698 NTYQSAMGKQAMGVYITNYHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVA 757
Query: 716 VLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT-ETIDLSDDGNKVDRGQKLFRRNKDA-- 772
+L YTGY+ ED++ILN ++V+RG Y++ + + G++ ++ +K R N
Sbjct: 758 ILCYTGYNQEDSVILNATAVERGFFRSVFYRSYKDAESKRIGDQEEQFEKPNRNNCQGMR 817
Query: 773 KSLHSVIDSDGL-----------PYVGQMIHPGEPYCSIYDKTTNSWRTNSR---KGSES 818
+++ +D DG+ +G+ I E + T + ++ + SE+
Sbjct: 818 NAIYDKLDDDGIIAPGLRVSGDDVVIGKTITLPETDDDLDGTTRRHTKRDASTFLRNSET 877
Query: 819 VFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGV 878
VD V + + NS+ + IR R R P IGDKF+SRHGQKG C + DMPF+
Sbjct: 878 GIVDQVMLTL-NSEGY-KFCKIRVRSVRIPQIGDKFASRHGQKGTCGVQYRQEDMPFT-C 934
Query: 879 TGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
G+ PD+IINPHA PSRMTI L+E + K
Sbjct: 935 EGLTPDIIINPHAIPSRMTIGHLIECLQGK 964
>gi|159471568|ref|XP_001693928.1| DNA-directed RNA polymerase III, subunit 2 [Chlamydomonas
reinhardtii]
gi|158277095|gb|EDP02864.1| DNA-directed RNA polymerase III, subunit 2 [Chlamydomonas
reinhardtii]
Length = 1161
Score = 248 bits (632), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 263/1020 (25%), Positives = 415/1020 (40%), Gaps = 208/1020 (20%)
Query: 9 FEPLRELVRHHIESFDYMLDEGLSEMF--------------------------------- 35
F +R LV+ H++SF+Y+L+ L ++
Sbjct: 38 FLKVRGLVKQHLDSFNYLLNSELRKIVAANEKVTCDTDPNFYLKYTNIYVGGPSVDEDMV 97
Query: 36 ------DHCRQAKISYTGKLMADVEFQYLDAGSPVVRER-------FNFGQFPVMLKTRR 82
CR +Y+ + D+E+ G +V +R + G+ P+ML+ R
Sbjct: 98 QVGTTPQQCRLRDATYSAPITVDIEYT---RGKEIVVKRGRGGVGAVSIGRMPLMLRCDR 154
Query: 83 CHLQGADSQKLVSLKEEAAEMGGYFILNGLERVF---------RSVI-LPKQNYPMSMVR 132
C L + +L L E + GGYFI+ G E+V R +I N M+ V
Sbjct: 155 CVLYNKNEAQLAQLGECPLDPGGYFIVRGTEKVILIQEQLSKNRIIIDTDSHNEVMASVT 214
Query: 133 SSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKA 192
SS +R K ++++ +GK YL K
Sbjct: 215 SSTHER---------------KSKTNIVFS---------------KGKIYL-------KH 237
Query: 193 LVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIG 252
+D+ IF L E ++ AVG+ ++ + + E + L + T++Q L ++G
Sbjct: 238 NAFQDDVNIFVVLKAMGCESDQEAVQAVGAAALAALLVPSVQEAKGLGVFTQMQALDYLG 297
Query: 253 EHFQ--PVIDG---LQSESYYAVAETVIRDYIFVHLNDNNDKFN-----LLIFMLQKLFS 302
+ P G + +S A V+ + H+ +F + + + + L++
Sbjct: 298 GKLKASPKFGGGDQKRRKSKVDEARDVLAHVVLCHVPVPRYQFAQKIAYVAVMVRRMLYA 357
Query: 303 LVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFN 362
++D + D D N+ + L G L+++ L E L L K D + + + F+
Sbjct: 358 VLDPACIDDR-DYYGNKRLELAGGLLSL-LFEDLFKRLNSDIKRQADAVLSKANRATQFD 415
Query: 363 LANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFR 422
+A + + I +E+ L +G + +R G T RL+F+ +
Sbjct: 416 VAKAIR------TDTITYGLESALSSGNWIIRRFR--MERKGVTQVLSRLSFIAAMGMM- 466
Query: 423 AVHRGASFAGLRTTS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGN 481
+ F R S R L P WG LCP TP+GE CGL+ ++ V + +
Sbjct: 467 -TRMTSQFEKTRKVSGPRALHPSQWGMLCPADTPEGESCGLVKNLALMTHVTTDEEEGPL 525
Query: 482 IRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHL 541
IR L V++G I ++ G L V L+G +VGV ++V
Sbjct: 526 IR---------LLVMLGTEPITAIAPAEMHGHGGAL-VFLNGTLVGV--HRRPHRLVREA 573
Query: 542 RRLKVSA--ASVIPDDLE--VGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEE--- 594
R L+ + + L+ Y+ G L + + VR L S E
Sbjct: 574 RELRRAGHLGEFVHVHLQGDACYISCDGGRVCRPLIICDAGVPRVRQEHITKLRSGERCE 633
Query: 595 ------------------SQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIHPTG 636
+N+ LI +E+ ++ TH EI P
Sbjct: 634 WGFPDFLARGLLEYLDVNEENVSLIALYEKDCNKL---------------TTHLEIEPFT 678
Query: 637 MLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTN 696
++ VV+ L P+ HNQSPRN YQC M KQ MG R D LY L PQ P++ +
Sbjct: 679 IMGVVSGLIPFPHHNQSPRNTYQCAMGKQAMGNIAYNQMSRMDSLLYLLVYPQRPLLTSR 738
Query: 697 TYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDG 756
T G D+ G NA VAV++Y+GYD+EDA+++NK S+DRG + + L
Sbjct: 739 TIELVGFDKLGAGQNASVAVMSYSGYDIEDAIVMNKYSLDRGFGRCIVLKKYGASLRKYA 798
Query: 757 NKV-DR--------GQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSI------- 800
N+ DR GQK ++D DG+ VG I PG+ Y ++
Sbjct: 799 NRASDRIVAPLPLPGQKA------VAPRFRLLDRDGIACVGDYILPGDVYINMQRPSNTR 852
Query: 801 ------------YDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNP 848
Y + SW++ E VD V + + + K I RHTR P
Sbjct: 853 DPLPAANMPDAFYRPSPMSWKSTPAMAGERCIVDKVQITANDESHYSIKVLI--RHTRRP 910
Query: 849 IIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
+GDKFSSRHGQKGV + D PFS G+ PDLI+NPH FPSRMT+ ++E + +K
Sbjct: 911 ELGDKFSSRHGQKGVVGNIVRQEDFPFSE-RGVCPDLIMNPHGFPSRMTVGKMIELLGSK 969
>gi|123481595|ref|XP_001323594.1| DNA-directed RNA polymerase, beta subunit family protein
[Trichomonas vaginalis G3]
gi|121906462|gb|EAY11371.1| DNA-directed RNA polymerase, beta subunit family protein
[Trichomonas vaginalis G3]
Length = 1177
Score = 247 bits (631), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 249/926 (26%), Positives = 396/926 (42%), Gaps = 108/926 (11%)
Query: 39 RQAKISYTGKLMADVEFQYLDAGSPVVR---ERFNFGQFPVMLKTRRCHLQGADSQKLVS 95
R +SY+ L +D+ +D+ + + + + PVM+++ CHL + ++
Sbjct: 115 RLRSLSYSLILRSDIRVVVMDSNKNMKQLDVDGVEIAKVPVMIRSEYCHLSNHRDDRAIN 174
Query: 96 --LKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVR 153
L E + GGYFI+NG E+V N P+ + S D A IR
Sbjct: 175 DNLNECDYDPGGYFIVNGSEKVIIGQEHMVINKPICYAQKSMVK-----YDLATEIRSQP 229
Query: 154 K--DQSSVTLKLYYLLNGSVR----LGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTC 207
K + S L+ L + + + L E +P+ I+ +AL D EI + +
Sbjct: 230 KVFGRLSQPFNLFLLAPTAKQPERPIHAKLSKTEKTIPLFILFRALKFKGDKEILDLI-- 287
Query: 208 CYDEKYKKEKGAVGSPLVSERVKIILAEVQDLS--LTTRLQCLQHIGEHFQPVIDGLQSE 265
CYD P SE + ++ +++ S L R CL +G+ I +
Sbjct: 288 CYD------------PEDSEFIDVLRPSIEESSSFLDDR-ACLDFVGKRCS--IAAEEKS 332
Query: 266 SYYAVAETVIRDYIFVHL----NDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEI 321
A+ ++ +Y+ HL +D K + +M L ++V D+ D N+ +
Sbjct: 333 QRLRKAQRLLNEYLLPHLGEKESDTTSKAFFIGYMAHNLINVVLGRRDQDDRDHYSNKRL 392
Query: 322 LLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTS 381
L G LI E ++ + ++ +++ + A++ + N K I +
Sbjct: 393 DLAGPLIGQLFALLFEKMIKSLTQHLEKRLKDGNIDQMAKSAADLTRQGVLN-FKSITSG 451
Query: 382 IETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKL 441
+E + TG + Q +AG + RL FL +S R + G + T R L
Sbjct: 452 LEYSIGTGNWSVQR--QAGSKAGVSQMLNRLTFLSTLSNLRRTNTPIGRDG-KLTGPRHL 508
Query: 442 LPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGM 501
WG++CPV TP+G+ CGL+ ++ V + +I R+L G
Sbjct: 509 HNTHWGYICPVETPEGQSCGLIKNLALMSIVTVNRELEAG--------DAITRILEDTGT 560
Query: 502 IPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSE--IEKVVAHLRRLKVSAASVIPDDLE-V 558
IP + ++ + L+G G+ + +E +++ R LK IP D+ V
Sbjct: 561 IP-IQQITPDQIKDSTKIFLNGAWYGIHTDAYDLMETLLSERRSLK------IPSDVSFV 613
Query: 559 GYVPLSLGGAYPGLYLFTSPPKFVRPVRNI---------SLPSEESQN---------IEL 600
++ ++++T + RPV + S+ +E+ N +E
Sbjct: 614 HHI------RDQEIFIWTDGGRITRPVLIVNDMHLTLKKSVLYDENTNWKVLRYKGMVEY 667
Query: 601 IGPFEQVFMEIRCPDGGDGGRRNAFPA----THEEIHPTGMLSVVANLTPYSDHNQSPRN 656
+ E+ I RN+ TH EIHP+ + V + P+ DHNQSPRN
Sbjct: 668 LDIDEEETKLIALSPADLEENRNSPTGVKTYTHCEIHPSLIFGVCGTIIPFPDHNQSPRN 727
Query: 657 MYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAV 716
YQC M KQ +G R D + L PQ P+V T ++ P G N VA+
Sbjct: 728 TYQCAMGKQAIGLYTTNYMIRMDSSSHVLWYPQKPLVATRNMRYLNFNKLPAGINVTVAI 787
Query: 717 LAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKS-- 774
YTGY+ ED+++LN S++DRG+ ++T DG + F + K
Sbjct: 788 CCYTGYNQEDSLMLNASAIDRGLFRSYFFRTYKETAEGDGTEGASEVFTFPDPQTVKGIK 847
Query: 775 LH--SVIDSDGLPYVGQM----------IHPGEPYCSIYDKTTNSWRTNSRKGSESVFVD 822
LH S ID+DGL G + I P P + D + + E+ VD
Sbjct: 848 LHDSSKIDADGLAIPGAVVSAQDVIIGKISPDSP--TELDHRQYKDTSCVVRPMETGVVD 905
Query: 823 YVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMR 882
V + KNL Q A +R R R P IGDKF SRHGQKGVC + DMPF+ GM
Sbjct: 906 LVLRTI-TKKNL-QLARVRTRQMRRPEIGDKFCSRHGQKGVCGMTYRQEDMPFTR-DGMV 962
Query: 883 PDLIINPHAFPSRMTIAMLLESVAAK 908
PD+I+NPHA PSRMTI L+E + K
Sbjct: 963 PDIIMNPHALPSRMTIGHLIECLLGK 988
>gi|324120594|dbj|BAJ78688.1| RNA polymerase II second largest subunit [Metriocampa sp. 44]
Length = 1176
Score = 247 bits (631), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 251/936 (26%), Positives = 403/936 (43%), Gaps = 116/936 (12%)
Query: 34 MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVR---ERFNFGQFPVMLKTRRCHLQGADS 90
M + R ++Y+ L D+ + G V ++ G+ P+ML++ C L G
Sbjct: 110 MPNEARLRNLTYSAPLYVDITKSIVKEGEEAVETQHQKTFIGKIPIMLRSTYCLLNGLTD 169
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
+ L L E + GGYFI+NG E+V +I ++ ++ S +D + Y K+ +
Sbjct: 170 RDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFSMKDGKYAY--KSEIRS 224
Query: 151 CVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
C+ + + TL + L G + G+ + +P+ IV +AL D +
Sbjct: 225 CLEHSSRPTSTLWVNMLARGGQSIKKSAIGQRIIAIVPYIKQEIPIMIVFRALGFVADRD 284
Query: 201 IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAE---VQDLSLTTRLQCLQHIGEHFQP 257
I H+ +D+ P + E VK L E VQ+ ++ L IG +
Sbjct: 285 ILEHIIYDFDD-----------PEMMEMVKPSLDEAFVVQEQNVA-----LNFIGA--RG 326
Query: 258 VIDGLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNP 313
G+ E A +++ + H+ ++ K L +M+ +L D+
Sbjct: 327 ARPGVTKEKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDR 386
Query: 314 DSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKN 373
D N+ + L G L+ + ++ L++ + Q I + GK F+ LA IK
Sbjct: 387 DHYGNKRLDLAGPLLAFLFRGLFKNLLKEVRMYAQKFI-DRGKDFNL-ELA-IK------ 437
Query: 374 PSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGL 433
++ I + L TG Q Q RAG + RL F +S R V+ G
Sbjct: 438 -TRIITDGLRYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRVNSPIGRDG- 494
Query: 434 RTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSIL 493
+ R+L WG +CP TP+G GL+ ++ ++ + IL
Sbjct: 495 KLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYIS-----------VGSQPSPIL 543
Query: 494 RVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VS 547
L M +L ++ S + ++G VG+ + E++++ LR+L+ VS
Sbjct: 544 EFLEEWSM-ENLEEIAPSAIADATKIFVNGCWVGI--HRDPEQLMSTLRKLRRQMDIIVS 600
Query: 548 AASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN---------- 597
S+I D + + G L K R+I + E N
Sbjct: 601 EVSMIRDIRDREIRIYTDAGRICRPLLIVEGGKLSLKKRHIEMLKEREYNNYGWQDLVAS 660
Query: 598 --IELIGPFEQ-VFMEIRCPDGGDGGRRNAFPAT--HEEIHPTGMLSVVANLTPYSDHNQ 652
+E I E+ M P+ + A+ T H EIHP +L V A++ P+ DHNQ
Sbjct: 661 GVVEYIDTLEEETVMIAMSPEDLRQDKEYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQ 720
Query: 653 SPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNA 712
SPRN YQ M KQ MG + R D + L PQ P+V T + E P G N+
Sbjct: 721 SPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLFYPQKPLVTTRSMEYLRFRELPAGINS 780
Query: 713 IVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT-ETIDLSDDGNKVDRGQKLFRRNKD 771
IVA+ YTGY+ ED++I+N S+V+RG Y+ + + G++ ++ +K R +
Sbjct: 781 IVAIACYTGYNQEDSVIMNTSAVERGFFRSVFYRAYKDQECKRSGDQEEQFEKPTRESCQ 840
Query: 772 A--KSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTT-----------NSWRTNSR----- 813
+++ +D DG+ G + + I KT + R + R
Sbjct: 841 GMRNAIYDKLDDDGIIAPGIRVSGDD---VIIGKTITLPITDDELEGTTKRFSKRDASTF 897
Query: 814 -KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDID 872
+ SE+ VD V V + N + IR R R P IGDKF+SRHGQKG C + D
Sbjct: 898 LRNSETGIVDQVMVTLNNEGY--KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQED 955
Query: 873 MPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
MPF+ G+ PD+IINPHA PSRMTI L+E + K
Sbjct: 956 MPFT-CEGLTPDIIINPHAIPSRMTIGHLIECLQGK 990
>gi|337283877|ref|YP_004623351.1| DNA-directed RNA polymerase subunit beta [Pyrococcus yayanosii CH1]
gi|334899811|gb|AEH24079.1| DNA-directed RNA polymerase subunit beta [Pyrococcus yayanosii CH1]
Length = 1118
Score = 247 bits (631), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 255/978 (26%), Positives = 424/978 (43%), Gaps = 158/978 (16%)
Query: 15 LVRHHIESFDYMLDEGLSEMFDHCRQAK-------ISYTGKLMADVEFQ----------- 56
LVR H++S++ ++ GL E+ + K + + + + EFQ
Sbjct: 27 LVRQHLDSYNAFIERGLQEVVNEFGGVKPDIPDFEVKFGRIRVGEPEFQEAHGQRKPLYP 86
Query: 57 --------------YLDAGSPVVRE------RFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
YL+ PVV+ G+ P+MLK++ C L G ++L+ L
Sbjct: 87 MDARIRNLTYSAPLYLEM-IPVVKGIEQEPVEVRIGELPIMLKSKVCRLYGLSDEELIKL 145
Query: 97 KEEAAEMGGYFILNGLERVFRSV--ILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRK 154
E+ + GGYFI+NG ERV S+ I P + ++V +R+E Y K R +
Sbjct: 146 GEDPKDPGGYFIINGSERVIVSIEDIAPNR----TLVEKD--ERQERYLAKCFSYRHGYR 199
Query: 155 DQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIV--LKALVDTNDLEIFNHLTCCYDEK 212
+V + +L S+ PV V ++AL D +I +
Sbjct: 200 ALITVERRKDGILYVSI--------PNVPKPVKFVYVMRALGLEKDKDIVD--------- 242
Query: 213 YKKEKGAVGSPLVSERVKIILAEVQDLS-LTTRLQCLQHIGEHFQPVIDGLQSESYYAVA 271
AVG+ E +++ ++D S + T+++ L+ IG P G E A
Sbjct: 243 ------AVGND--PEVQQVLFDNLEDASDIQTQMEALELIGRLVAP---GQAREYRLKRA 291
Query: 272 ETVIRDYIFVHLNDNND----KFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHL 327
E VI + + H+ N + K L M K+ L D+ D N+ + L G L
Sbjct: 292 EYVIDNNLLPHMGVNPEDRIRKAYYLGMMALKVIELSLGRRDEDDKDHYANKRLRLAGDL 351
Query: 328 ITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTS-IETML 386
+ + ++ + + + G+K+ F NI + + + + T IE L
Sbjct: 352 LKDLFRVAFAQLVKDIQYQMTKTYQRKGEKYTF---GNIHRFIRNSIRPDVLTERIEHSL 408
Query: 387 KTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESW 446
TG A G R G + +R N++ +S R V + R L W
Sbjct: 409 ATG--AWPGG-----RTGVSQLLDRTNYMSTLSHLRRVTSPLDREQPHFEA-RDLHGTHW 460
Query: 447 GFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLP 506
G +CP TP+G CGL+ ++ ++ + + +R++ L+ +G+IP
Sbjct: 461 GRICPTETPEGPNCGLVKNLALMAQITTAVPEK-EVREY----------LMKLGIIPIE- 508
Query: 507 KLVKSGPPAVLSVLLDGRVVGVIPSSE--IEKVVAHLRRLKVSAASVIP--DDLEVGYVP 562
V+ P + V L+G ++G I + +E++ R K+S + +D++ YV
Sbjct: 509 --VRRPSPELWRVYLNGVLIGTIEDGKALVERIKKDRRSGKISDVINVAYYEDIKEVYVN 566
Query: 563 LSLGGAY-PGLYLFTSPPKFVRP-VRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGG 620
G P + + PK R V + + ++ +G E + E
Sbjct: 567 SDDGRVRRPLIIVENGKPKLTREHVEAVKQGRLKWSDLIKMGIIEYLDAE---------E 617
Query: 621 RRNAFPA----------THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFS 670
NA+ A TH E+ P +L + A+L PY +HN +PRN Y MAKQ++G
Sbjct: 618 EENAYVAMWPWEVTEEHTHLELMPAAILGLPASLVPYPEHNAAPRNTYGAGMAKQSLGLG 677
Query: 671 VQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMIL 730
+ R D + + L PQ P+V + G ++ P G N +VA+LAY GY+MEDA+I+
Sbjct: 678 WANFRIRVDTRGHLLHYPQVPLVNSRIMKAVGYEDRPAGQNFVVAILAYQGYNMEDAIII 737
Query: 731 NKSSVDRGMCHGQIY-------------QTETIDLSDDGNKVDRGQKLFRRNKDAKSL-- 775
NK+S++RG+ + QT+ ++ D + RG+K +R N D L
Sbjct: 738 NKASIERGLARSTFFRTYEAEEKKYLGGQTDRFEIPDPTVRGYRGEKYYR-NLDEDGLIF 796
Query: 776 -HSVIDSDGLPYVGQMIHPG--EPYCSIYDKTTNSWRTNSR--KGSESVFVDYVAVDMKN 830
S +D + +G+ P E + R S + SE VD V +
Sbjct: 797 PESKVDGKDV-LIGRTSPPRFLEERGGLGGMILQERRETSVAVRPSEKGIVDKVII--TE 853
Query: 831 SKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPH 890
+ + + + R R P +GDKF+SRHGQKGV + P DMP++ +G+ PDLI+NPH
Sbjct: 854 TGDGTKLVKVTVRDLRIPELGDKFASRHGQKGVIGLIVPQEDMPWTE-SGIVPDLIVNPH 912
Query: 891 AFPSRMTIAMLLESVAAK 908
PSRMT+ L+E++ K
Sbjct: 913 GIPSRMTVGQLIEAIGGK 930
>gi|126460694|ref|YP_001056972.1| DNA-directed RNA polymerase subunit B [Pyrobaculum calidifontis JCM
11548]
gi|126250415|gb|ABO09506.1| DNA-directed RNA polymerase, subunit B' / DNA-directed RNA
polymerase, subunit B' [Pyrobaculum calidifontis JCM
11548]
Length = 1127
Score = 247 bits (630), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 254/903 (28%), Positives = 401/903 (44%), Gaps = 132/903 (14%)
Query: 57 YLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVF 116
Y+D P V E F G+ P+M+K++RC+L + E+ + GGYFI+NG ERV
Sbjct: 117 YVD-DEPYVTETFYIGELPIMVKSKRCNLTRLKPSEYAKKFEDPQDFGGYFIINGSERVI 175
Query: 117 RSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSSVTLK--LYYLLNGSVRLG 174
S + P+ V DK V + + + + L LN +
Sbjct: 176 ISQEDLVTDRPIYDV-----------GDKPSVKFLAKTISTGIGYRSTLTVELNKDGVIY 224
Query: 175 FWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILA 234
L +P I +KAL D ++ ++ D +KE + S + + +V I
Sbjct: 225 VTLSAMPVKIPFPIYMKALGLETDEDVVKAVSD--DPDIQKE--LLPSLIAANQVAI--- 277
Query: 235 EVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDNN------- 287
TR L +IG V G A ++ Y HL
Sbjct: 278 --------TREDALDYIGGK---VAVGQPRPVRIERALQLLDRYFLPHLGTTTPDEKKQQ 326
Query: 288 ----DKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKG 343
K +L +++ L L D+ D + N+ + L G L+T + + +L++
Sbjct: 327 EIRLKKALMLGQIVKGLVELQLGRRKPDDKDHVGNKRVRLVGDLMTQLFRTVFKQFLQE- 385
Query: 344 KKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRA 403
++ ++E ++ I P Q + + + R A TG + +
Sbjct: 386 ---LRSQLEK------YYARGRI-------PHIQTIVRPDIITERVRQALATGNWVGGKT 429
Query: 404 GYTVQAERLNFLRFISFFRAVHRGASFAGLRTT---SVRKLLPESWGFLCPVHTPDGEPC 460
G + +R N+L +S+ R V S RT R L P WG LC V TP+G+
Sbjct: 430 GVSQILDRTNYLSTLSYLRRVVSSLS----RTQPHFEARDLHPTQWGRLCAVETPEGQNV 485
Query: 461 GLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVL 520
GL+ ++ + + D R + ++L +G +P L K + G V
Sbjct: 486 GLVKNLALLAEITTGVDER-----------EVEQLLYNLGTVPVL-KAREDGIRGA-EVY 532
Query: 521 LDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSL-----GGAY--PGLY 573
L+GR++G+ P++E ++VA +R L+ I D++ + ++ S+ GG P L
Sbjct: 533 LNGRLIGIHPNAE--ELVATVRSLRRQGK--ISDEINIAHINGSVLVNCDGGRIRRPLLV 588
Query: 574 LFTSPPKF----VRPVRNISLPSEESQN---IELIGPFEQVFMEIRCPDGGDGGRRNAFP 626
+ K V VR L ++ +E + E+ I GD
Sbjct: 589 VENGRLKLTKDIVERVRKGDLTWDDLVKMGVVEYLDADEEENAHIAVDPRGD-----LSG 643
Query: 627 ATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQ 686
TH EI P+ +L +A++ PY +HNQSPRN Y+ MAKQ++G ++ D + + L
Sbjct: 644 YTHVEIIPSAILGAIASIIPYLEHNQSPRNQYEAAMAKQSLGLPQSNFLYKLDSRGHMLY 703
Query: 687 TPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQ 746
P+ PIV T G + P G NA+VA+L YTGY++EDA+ILNK+SV+RGM Y+
Sbjct: 704 YPERPIVTTRGLELVGYSKRPAGQNAVVALLTYTGYNIEDAVILNKASVERGMFRSVFYR 763
Query: 747 T-ETIDLSDDGNKVDRGQ------KLFRRNKDAKSLHSVIDSDGLP----YVGQ---MIH 792
T ET + G + DR + K +R +S +D DG+ YV +I
Sbjct: 764 TYETEEQKYPGGEEDRIEVPDSSVKGYR----GPEAYSHLDEDGIAPPEVYVSSNEVLIG 819
Query: 793 PGEP---YCSIYDKTTNSWRTNS----RKGSESVFVDYVAVDMKNSKNLPQKANIRFRHT 845
P Y ++ + R ++ R+G + + VD V + N + +R R
Sbjct: 820 KTSPPRFYTTLETERILKERRDASVAVRRGEKGI-VDRVIITESPEGN--KLVKVRLREL 876
Query: 846 RNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESV 905
R P +GDKF+SRHGQKGV L DMPF+ G+ PD+I+NPHA PSRMT+ LLES+
Sbjct: 877 RIPELGDKFASRHGQKGVVGMLLRQEDMPFTE-DGIVPDIIVNPHALPSRMTVGQLLESI 935
Query: 906 AAK 908
A K
Sbjct: 936 AGK 938
>gi|156098891|ref|XP_001615461.1| DNA-directed RNA polymerase, beta subunit [Plasmodium vivax Sal-1]
gi|148804335|gb|EDL45734.1| DNA-directed RNA polymerase, beta subunit, putative [Plasmodium
vivax]
Length = 1562
Score = 247 bits (630), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 138/301 (45%), Positives = 181/301 (60%), Gaps = 27/301 (8%)
Query: 631 EIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQT 690
E+ T LS + +LTP+SDHNQSPRN+YQCQM KQTMG + + K+Y + TPQ
Sbjct: 986 ELKETSFLSFLGSLTPFSDHNQSPRNIYQCQMLKQTMGIQSLNMMYTFTNKIYRMITPQF 1045
Query: 691 PIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETI 750
P+V T Y YG+D +P+GTNA+VA+LAYTGYDMEDA+I+NKSS +RG+ IY+TE I
Sbjct: 1046 PLVVTRDYELYGVDNFPSGTNAVVAILAYTGYDMEDALIINKSSAERGIFRTHIYKTEII 1105
Query: 751 DLSDD--------GNKV-------------DRGQKLFRRNKDAKSLH--SVIDSDGLPYV 787
DL + GN V G + N + H +++ DGLP V
Sbjct: 1106 DLEKNHGRGEFTLGNNVRYTNSSVGSNANGANGNNSGKSNLKFQYEHMGKMLNKDGLPRV 1165
Query: 788 GQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRN 847
Q I P S +K KG +VD V + K+++N Q A +R R TR
Sbjct: 1166 QQKIVELNPLYSYINKANELTVYEKFKGHGEYYVDCVT-NYKSTRN--QIAIVRLRTTRP 1222
Query: 848 PIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAA 907
P++GDKF+SRHGQKGV S+L+P DMPFS +G+ PD+I NPH PSRMTI ML+ES+
Sbjct: 1223 PLVGDKFASRHGQKGVVSRLFPHEDMPFSE-SGIVPDVIFNPHGIPSRMTIGMLIESICG 1281
Query: 908 K 908
K
Sbjct: 1282 K 1282
Score = 115 bits (288), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 73/235 (31%), Positives = 123/235 (52%), Gaps = 27/235 (11%)
Query: 385 MLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPE 444
KTG +A++ + QQ++G+ + A+ +N LRFI+ FRA+HRG F ++ S RKLL E
Sbjct: 584 FFKTGNIASEN-IGYQQKSGWVIGADEINSLRFITNFRAIHRGCFFQDVKVLSPRKLLGE 642
Query: 445 SWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPS 504
SWGF+CPVHTPDG PCGLLNH++ V ++S N ++ + ++ + V + +
Sbjct: 643 SWGFICPVHTPDGSPCGLLNHLSQFSYV---HNSASNESHKLNIKLYLKKIGVNVNLDDT 699
Query: 505 LPKLVKSGPPAV-----LSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEV- 558
SG P + + +++D + I + +VV L+ K + E+
Sbjct: 700 ------SGIPTIYEDQTIPIVVDSVPITYISEQDFSRVVYKLKYAKNHNLYSLKAYFEIN 753
Query: 559 GYV--PLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEI 611
Y+ PL + + + T P + +RP+ N+ + + IE I P Q ++ I
Sbjct: 754 AYLNEPLLMN----SIIINTFPGRLIRPLFNLKM-----KCIEYISPSYQPYVAI 799
Score = 47.4 bits (111), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 64/324 (19%), Positives = 125/324 (38%), Gaps = 56/324 (17%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
C+ + +Y G++ + + D ++ + G PVM+ + C+L + + L
Sbjct: 174 CKLSARTYEGEITLKINKKTNDE---IISTTVSAGYIPVMVLSNLCNLSSLNKKMLPQKG 230
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
E+ + +GG+F+++G +V R VI PK N + + V + C+ D S
Sbjct: 231 EDESLLGGFFVVSGHLKVIRYVIHPKYNTILLN------------EENKVHMNCLLNDNS 278
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEY-----LLPVGIVL---------KALVDTNDLEIFN 203
+Y + F+ G Y +P+ ++L L + + I N
Sbjct: 279 -----VYVNFLSCPKFDFFTYGARYQNSVMAVPLHVILLLLSPIKKKSYLFNKMKMGIKN 333
Query: 204 HLTCCYDEKYKKE---KGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIG--EHFQPV 258
Y E+Y + K + V E+ L+++G +F+
Sbjct: 334 ENAVKYIEQYIQSIFIKNGLNEKEVFEKYN-----------------LKYLGSSSYFRKG 376
Query: 259 IDGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQN 318
I S ++++ I H+ ++KF + M + L N DSL+N
Sbjct: 377 IFRYSIVSDEKKGRSILKYVILPHIQSYSEKFETVCMMFKTLIYSKFKLIARINKDSLEN 436
Query: 319 QEILLPGHLITIYLKEKLEDWLRK 342
+ HL++ LKE++ L +
Sbjct: 437 HAVTTCSHLLSNLLKEQIVTCLSR 460
>gi|302348973|ref|YP_003816611.1| DNA-directed RNA polymerase subunit B [Acidilobus saccharovorans
345-15]
gi|302329385|gb|ADL19580.1| DNA-directed RNA polymerase subunit B [Acidilobus saccharovorans
345-15]
Length = 1179
Score = 247 bits (630), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 242/932 (25%), Positives = 399/932 (42%), Gaps = 139/932 (14%)
Query: 37 HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
R +Y+ L ++ + ++ G+ V + G FP+M+K+ L A ++L+
Sbjct: 104 EARLRNFTYSAPLF--LQMKLVENGTEVYSDEVKVGDFPIMVKSVIDPLSKASYRELLEA 161
Query: 97 KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQ 156
E+ + GGYFI+NG ERV ++ +++ ++ + + A + +
Sbjct: 162 GEDPNDPGGYFIINGSERV----VVAQEDLAVNRIIVGV-----STANTAKITHSAKTVS 212
Query: 157 SSVTLKLYYLLN----GSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEK 212
+ + L+ +++ GS+ + + Y +P +++KAL D EI
Sbjct: 213 TILGLRRQVIVDRMSDGSLEVS--MSRLNYRIPFIVMMKALGLEKDAEI----------- 259
Query: 213 YKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAE 272
AV +R + E ++ T+ L+ +G + G E AE
Sbjct: 260 ----AAAVSPDPDVQRELLPSFEKVSAAIRTKEDALEFLGNR---IATGQPREIRIQRAE 312
Query: 273 TVIRDYIFVHLN----DNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLI 328
I H+ D K L M ++ L D+ D L N+ + L G LI
Sbjct: 313 EFIDTQFLPHIGLTPADRLAKAYFLGEMANRVLQLYLGKRQEDDKDHLANKRLRLAGDLI 372
Query: 329 TIYLKEKLEDWLRKGKKLIQDEIE----NNGKKFDFFNLANIKKVMEKNPSKQIGTSIET 384
E D ++ LI E+E + K D +L + E+
Sbjct: 373 A----EIFRDAFQQLATLIASELEEYISQHRKVRDLRSLVRPDIITERV----------- 417
Query: 385 MLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPE 444
R A TG R G + +R N++ +S R V S G R L
Sbjct: 418 -----RAALATGNWTGNRTGVSQALDRTNWMSLLSHLRRVISPLS-RGESNFEARDLHGT 471
Query: 445 SWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIP- 503
WG LCP TP+G CGL+ ++ T ++ + + + +L+ + +IP
Sbjct: 472 HWGRLCPFETPEGINCGLVKNLAMTAYISVGVNEQ-----------HVKNILMSMDLIPL 520
Query: 504 -SLPKLVKSGPPAVLS-------VLLDGRVVGVIP-SSEIEKVVAHLRRLKVSAASVIPD 554
K + SG P + V L+G+ +G + +E+ + + +RR + +
Sbjct: 521 DDAIKEIASGEPEAIEKYTNMAKVFLNGKPIGYVQDGAELRRKLIAMRR-----SGSLSY 575
Query: 555 DLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNI--SLPSEESQNIELIGPFEQVF---- 608
++ V Y+ G +Y+ T + +RPV + P + +E + E F
Sbjct: 576 EVSVAYIE---QGGIKEVYINTDEGRLMRPVIVVENGKPKLTKEMVEKVKRGEMSFWDLV 632
Query: 609 ----MEIRCPDGGDGGRRNAFPA----------THEEIHPTGMLSVVANLTPYSDHNQSP 654
+E PD NA+ A TH E+ G+ SVV ++TP+ +HNQSP
Sbjct: 633 RNGVIEFLDPDE----EENAYVAESPEEVTPEHTHLEMWTPGIFSVVTSITPFLEHNQSP 688
Query: 655 RNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIV 714
RN YQ MAKQ +G ++R D Y L PQ PIV+T + + G ++ P+G N IV
Sbjct: 689 RNTYQAAMAKQALGLYALNYQYRMDSHAYLLHYPQKPIVQTRSLEEIGYNDRPSGQNFIV 748
Query: 715 AVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETI-DLSDDGNKVD------------R 761
A++ Y GY+MEDA+I+NK+SVD G+ ++ T+ + + G D +
Sbjct: 749 AIMPYMGYNMEDAIIMNKTSVDYGLGRAHFFRVYTVMENTYAGGLKDTITVPSPKLYDHK 808
Query: 762 GQKLFRRNKDAKSLHSVIDSDGLP-YVGQMIHP----GEPYCSIYDKTTNSWRTNSRKGS 816
G + + + + ++ DG VG+ P E S+ T R G
Sbjct: 809 GDQYYTKLGPDGIIEPEVEVDGGDVLVGRESPPRFLGEERVMSLGTLTKRDTSVQLRYGE 868
Query: 817 ESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFS 876
V VD V + +NL K ++ R R P +GDKF+SRHGQKGV L+P DMP++
Sbjct: 869 HGV-VDTVLITQTTDRNLLVK--VKVRDLRIPELGDKFASRHGQKGVVGMLYPKYDMPYT 925
Query: 877 GVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
G+ PD+IINPH PSRMT+ +LE + K
Sbjct: 926 E-DGIVPDIIINPHGIPSRMTVGQILELITGK 956
>gi|324120632|dbj|BAJ78707.1| RNA polymerase II second largest subunit [Euborellia plebeja]
Length = 1174
Score = 246 bits (629), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 254/945 (26%), Positives = 409/945 (43%), Gaps = 134/945 (14%)
Query: 34 MFDHCRQAKISYTGKLMADVEFQYL-DAGSPV--VRERFNFGQFPVMLKTRRCHLQGADS 90
M + R ++Y+ L D+ + D P+ ++ G+ P+ML++ C L G
Sbjct: 108 MPNEARLRNLTYSAPLYVDITKTIIKDKEEPIETQHQKTFIGKIPIMLRSTYCLLSGLTD 167
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
+ L L E + GGYFI+NG E+V +I ++ ++ S +D + Y KA +
Sbjct: 168 RDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFSMKDGKFAY--KAEIRS 222
Query: 151 CVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
C+ + + TL + + G + G+ + +P+ IV +AL D +
Sbjct: 223 CLEHSSRPTSTLWVNMMARGGQSIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRD 282
Query: 201 IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
I H+ +D+ P + E VK L E + + L IG +
Sbjct: 283 ILEHIIYDFDD-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGA--RGARP 327
Query: 261 GLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
G+ E A +++ + H+ ++ K L +M+ +L D+ D
Sbjct: 328 GVTREKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 387
Query: 317 QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
N+ + L G L+ + ++ +++ + Q I + GK F+ +LA IK +K
Sbjct: 388 GNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFI-DRGKDFNL-DLA-IK-------TK 437
Query: 377 QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
I + L TG Q Q RAG + RL F +S R V+ G +
Sbjct: 438 IITDGLRYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRVNSPIGRDG-KLA 495
Query: 437 SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
R+L WG +CP TP+G GL+ ++ ++ + IL L
Sbjct: 496 KPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYIS-----------VGSQPSPILEFL 544
Query: 497 IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAAS 550
M +L ++ S + ++G VG+ + E+++A LR+L+ VS S
Sbjct: 545 EEWSM-ENLEEIAPSAIADATKIFVNGCWVGI--HRDPEQLMATLRKLRRQMDIIVSEVS 601
Query: 551 VIPD--DLEVGYVPLSLGGAYPGLYLFTSPPKFVRPV------------RNISLPSEESQ 596
+I D D E+ ++T + RP+ R+I + E
Sbjct: 602 MIRDIRDREI--------------RIYTDAGRICRPLLIVENGSLLLKKRHIDMLKEREY 647
Query: 597 N------------IELIGPFEQ-VFMEIRCPDGGDGGRRNAFPAT--HEEIHPTGMLSVV 641
N +E I E+ M PD + A+ T H EIHP +L V
Sbjct: 648 NNYGWQVLVASGVVEYIDTLEEETVMIAMSPDDLRQDKEYAYCTTYTHCEIHPAMILGVC 707
Query: 642 ANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKY 701
A++ P+ DHNQSPRN YQ M KQ MG + R D + L P P+V T +
Sbjct: 708 ASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYL 767
Query: 702 GIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDD-GNKVD 760
E P G N+IVA+L YTGY+ ED++I+N S+V+RG +++ S G++ +
Sbjct: 768 RFRELPAGINSIVAILCYTGYNQEDSVIMNASAVERGFFRSVFFRSYKDSESKRIGDQEE 827
Query: 761 RGQKLFRRNKDA--KSLHSVIDSDGL-----------PYVGQMIHPGEPYCSIYDKTTNS 807
+ +K R+ +L+ +D DG+ +G+ I E + D TT
Sbjct: 828 QFEKPTRQTCQGMRNALYDKLDDDGIISPGLRVSGDDVVIGKTITLPENEDEL-DGTTKR 886
Query: 808 WRTNSR----KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGV 863
+ + SE+ VD V + + NS+ + IR R R P IGDKF+SRHGQKG
Sbjct: 887 YTKRDASTFLRNSETGIVDQVMLTL-NSEGY-KFCKIRVRSVRIPQIGDKFASRHGQKGT 944
Query: 864 CSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
C + DMPF+ G+ PD+IINPHA PSRMTI L+E + K
Sbjct: 945 CGIQYRQEDMPFT-CEGLTPDIIINPHAIPSRMTIGHLIECLQGK 988
>gi|10963|emb|CAA41631.1| DNA-directed RNA polymerase [Drosophila melanogaster]
Length = 1135
Score = 246 bits (629), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 251/930 (26%), Positives = 404/930 (43%), Gaps = 144/930 (15%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR +Y+ + D+E Y + R G+ P+ML++ C L G +L L
Sbjct: 110 CRLRDTTYSAPITVDIE--YTRGTQRIKRNNLLIGRMPLMLRSN-CALTGKSEFELSKLN 166
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRC----VR 153
E + GGYF++ G E+V +++ +Q M+ F V++C
Sbjct: 167 ECPLDPGGYFVVRGQEKV---ILIQEQLSWNKMLTEDFNG----------VVQCQVTSST 213
Query: 154 KDQSSVTLKL-----YYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCC 208
++ S TL L YYL + S+ +P+ ++ KAL +D EI + +
Sbjct: 214 HEKKSRTLVLSKHGKYYLKHNSMTDD---------IPIVVIFKALGVVSDQEIQSLIGI- 263
Query: 209 YDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIG-----EHFQPVIDGLQ 263
D K + GA L + +L + T+ + L+++G + FQ
Sbjct: 264 -DSKSQNRFGAS------------LIDAYNLKVFTQQRALEYMGSKLVVKRFQSATTKTP 310
Query: 264 SESYYAVAETVIRDYIFVHLNDNNDKFNLLI------FMLQKLFSLVDHTSVSDNPDSLQ 317
SE + T I ++ V D FNL + M++++ + ++ D+ D
Sbjct: 311 SEEARELLLTTILAHVPV------DNFNLQMKAIYVSMMVRRVMAAELDKTLFDDRDYYG 364
Query: 318 NQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIEN-NGKKFDFFNLANIKKVMEKNPSK 376
N+ + L G L+++ ++ + + K + I +FD V++ +
Sbjct: 365 NKRLELAGSLLSMMFEDLFKRMNWELKTIADKNIPKVKAAQFD---------VVKHMRAA 415
Query: 377 QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
QI +E+ + +G + +RAG T RL+++ + V+ + F R
Sbjct: 416 QITAGLESAISSGNWTIKRFK--MERAGVTQVLSRLSYISALGMMTRVN--SQFEKTRKV 471
Query: 437 S-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRV 495
S R L P WG LCP +TP+GE CGL+ ++ + + + R I+
Sbjct: 472 SGPRSLQPSQWGMLCPSYTPEGEACGLVKNLALMTHITTEVEERP---------VMIVAF 522
Query: 496 LIGVGMIPSLPKLVKSGP---PAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVI 552
GV I + V P P V V ++G V+G+ + + +V +LR ++
Sbjct: 523 NAGVEDI----REVSGNPINNPNVFLVFINGNVLGLTLNHK--HLVRNLRYMRRKG---- 572
Query: 553 PDDLEVG-YVPLSLGGAYPGLYLFTSPPKFVRP---VRNISLPSEESQNIEL---IGPFE 605
+G YV + +Y+ T + RP V N ++ EL I F+
Sbjct: 573 ----RMGSYVSVHTSYTQRCIYIHTDGGRLCRPYVIVENRRPLVKQHHLDELNRGIRKFD 628
Query: 606 QVFMEIRCPDGGDGGRRNAFPA----------THEEIHPTGMLSVVANLTPYSDHNQSPR 655
++ ++F A TH EI +L V A L PY HNQSPR
Sbjct: 629 DFLLDGLIEYLDVNEENDSFIAWNEDQIEDRTTHLEIETFTLLGVCAGLVPYPHHNQSPR 688
Query: 656 NMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVA 715
N YQC M KQ MG R D +Y+L P P+V++ T D+ P G NA VA
Sbjct: 689 NTYQCAMGKQAMGMIGYNHNNRIDSLMYNLVYPHAPMVKSKTIELTNFDKLPAGQNATVA 748
Query: 716 VLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKV-DRGQKLFRRNKDAKS 774
V++Y+GYD+EDA+ILNK+S+DRG +Y+ + N+ DR + K
Sbjct: 749 VMSYSGYDIEDALILNKASIDRGYGRCLVYKNSKCTVKRYANQTFDRIMGPMKDALTNKV 808
Query: 775 L--HSVIDSDGLPYVGQ-------MIHPGEPYCSIYD-------KTTNSWRTNSRKGSES 818
+ H V+D+DG+ G+ MI+ P + + + + S KG E
Sbjct: 809 IFKHDVLDTDGIVAPGEQVQNKQIMINKEMPAVTSMNPLQGQSAQVPYTAVPISYKGPEP 868
Query: 819 VFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGV 878
+++ V V ++ K I R TR P GDKFSSRHGQKGV + DMPF+
Sbjct: 869 SYIERVMVSANAEEDFLIK--ILLRQTRIP-RGDKFSSRHGQKGVTGLIVEQEDMPFNDF 925
Query: 879 TGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
G+ PD+I+NPH FPSRMT+ LE + K
Sbjct: 926 -GICPDMIMNPHGFPSRMTVGKTLELLGGK 954
>gi|324120634|dbj|BAJ78708.1| RNA polymerase II second largest subunit [Forficula hiromasai]
Length = 1174
Score = 246 bits (629), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 251/945 (26%), Positives = 411/945 (43%), Gaps = 134/945 (14%)
Query: 34 MFDHCRQAKISYTGKLMADVEFQYL-DAGSPV--VRERFNFGQFPVMLKTRRCHLQGADS 90
M + R ++Y+ L D+ + D P+ ++ G+ P+ML++ C L G
Sbjct: 108 MPNEARLRNLTYSAPLYVDITKTIIKDKEEPIETQHQKTFIGKIPIMLRSTYCLLSGLTD 167
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
+ L L E + GGYFI+NG E+V +I ++ ++ S +D + Y K+ +
Sbjct: 168 RDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFSMKDGKYAY--KSEIRS 222
Query: 151 CVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
C+ + + TL + + G + G+ + +P+ IV +AL D +
Sbjct: 223 CLEHSSRPTSTLWVNMMARGGQSIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRD 282
Query: 201 IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
I H+ +D+ P + E VK L E + + L IG +
Sbjct: 283 ILEHIIYDFDD-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGA--RGARP 327
Query: 261 GLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
G+ E A +++ + H+ ++ K L +M+ +L D+ D
Sbjct: 328 GVTREKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 387
Query: 317 QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
N+ + L G L+ + ++ +++ + Q I + GK F+ +LA IK +K
Sbjct: 388 GNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFI-DRGKDFN-LDLA-IK-------TK 437
Query: 377 QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
I + L TG Q + RAG + RL F +S R V+ G +
Sbjct: 438 IITDGLRYSLATGNWGDQKKAHM-ARAGVSQVLNRLTFASTLSHLRRVNSPIGRDG-KLA 495
Query: 437 SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
R+L WG +CP TP+G GL+ ++ ++ + IL L
Sbjct: 496 KPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYIS-----------VGSQPSPILEFL 544
Query: 497 IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAAS 550
M +L ++ S + ++G VG+ + E+++A LR+L+ VS S
Sbjct: 545 EEWSM-ENLEEIAPSAIADATKIFVNGCWVGI--HRDPEQLMATLRKLRRQMDIIVSEVS 601
Query: 551 VIPD--DLEVGYVPLSLGGAYPGLYLFTSPPKFVRPV------------RNISLPSEESQ 596
+I D D E+ ++T + RP+ +I + E
Sbjct: 602 MIRDIRDREI--------------RIYTDAGRICRPLLIVENGNLLLKKHHIDMLKEREH 647
Query: 597 N------------IELIGPF-EQVFMEIRCPDGGDGGRRNAFPA--THEEIHPTGMLSVV 641
N +E I E+ M PD + A+ TH EIHP +L V
Sbjct: 648 NNYGWQVLVASGVVEYIDTLEEETVMIAMSPDDLRQEKEYAYCTTYTHCEIHPAMILGVC 707
Query: 642 ANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKY 701
A++ P+ DHNQSPRN YQ M KQ MG + R D + L P P+V T +
Sbjct: 708 ASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYL 767
Query: 702 GIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT-ETIDLSDDGNKVD 760
E P G N+IVA+L YTGY+ ED++I+N S+V+RG+ Y++ + + +G++ +
Sbjct: 768 RFRELPAGINSIVAILCYTGYNQEDSVIMNASAVERGLFRSVFYRSYKDSESKRNGDQEE 827
Query: 761 RGQKLFRRNKDA--KSLHSVIDSDGL-----------PYVGQMIHPGEPYCSIYDKTTNS 807
+ +K R+ +L+ +D DG+ +G+ I E + D TT
Sbjct: 828 QFEKPTRQTCQGMRNALYDKLDDDGIISPGLRVSGDDVVIGKTITLPENEDEL-DGTTKR 886
Query: 808 WRTNSR----KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGV 863
+ + SE+ VD V + + NS+ + IR R R P IGDKF+SRHGQKG
Sbjct: 887 YTKRDASTFLRNSETGIVDQVMLTL-NSEGY-KFCKIRVRSVRIPQIGDKFASRHGQKGT 944
Query: 864 CSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
C + DMPF+ G+ PD+IINPHA PSRMTI L+E + K
Sbjct: 945 CGIQYRQEDMPFT-CEGLTPDIIINPHAIPSRMTIGHLIECLQGK 988
>gi|322784943|gb|EFZ11714.1| hypothetical protein SINV_06174 [Solenopsis invicta]
Length = 1123
Score = 246 bits (629), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 257/937 (27%), Positives = 404/937 (43%), Gaps = 143/937 (15%)
Query: 38 CRQAKISYTGKLMADVEFQYL--------DAGSPVVRERFNFGQFPVMLKTRRCHLQGAD 89
CR ++Y+ + +VE +Y+ G ++ G P+ML++ C L
Sbjct: 81 CRLRDLNYSAPI--EVEIEYVRNNPDNKEGGGKQRTWKKVVIGMMPIMLRSSNCVLTKKS 138
Query: 90 SQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVI 149
+L L E + GGYFI+NG E+V +++ +Q MVR+ R E VV
Sbjct: 139 ESQLAKLNECPHDPGGYFIINGQEKV---ILIQEQ-----MVRN--RIVLEVDNKDCVVA 188
Query: 150 RCV-----RKDQSSVTLKLYYLLNGSVRLGFWLQGKEYL--------LPVGIVLKALVDT 196
C +K +++V K GK YL + + I+ KA+
Sbjct: 189 ACNSFTHDKKTKTNVVGK---------------SGKYYLRHNMFQDDILITIIFKAMGIV 233
Query: 197 NDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQ--DLSLTTRLQCLQHIGE- 253
+DLEI + +KY + A L E Q DL++ ++ Q L+++
Sbjct: 234 SDLEIMQMVGT--QDKYLDKFAAS------------LEECQREDLNIFSQNQALKYLNSK 279
Query: 254 ----HFQPVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSV 309
F + E A+A ++ + N K L M++++ + S+
Sbjct: 280 RKQTRFHVPKSRVADEMKDAIATNILSHVPVIDFN-FRPKALYLALMIRRVINAQSDRSL 338
Query: 310 SDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIEN-NGKKFDFFNLANIKK 368
D+ D N+ + L G L+ + ++ + + + K++ I FD I K
Sbjct: 339 IDDKDYYGNKRLELAGSLLALMFEDLFKRFNWELKQIADKNIPKIKAAAFD------IAK 392
Query: 369 VMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGA 428
M + I + + +G + +R G T RL+++ + VH +
Sbjct: 393 HMRHD---LITNGLAFAISSGNWTIKRFR--MERHGVTQVLSRLSYISALGMMTRVH--S 445
Query: 429 SFAGLRTTS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSK 487
F R S R L WG LCP TP+GE CGL+ ++ + + + I
Sbjct: 446 QFEKTRKVSGPRSLQGSQWGMLCPNDTPEGEACGLVKNLALMAHITTEVPEKPLIDLMRN 505
Query: 488 MRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVS 547
+ + L G +L K G V +V ++G + G++ + + ++V R L+ +
Sbjct: 506 LGVEDIYTLAG-------EELTKEG---VYTVFVNGIMAGIVQNHK--RLVKQFRLLRRA 553
Query: 548 A-----ASVIPDDLEVGYVPLSLGG--AYPGLYLFTSP----PKFVRPV-RNISLPSEES 595
S+ S GG P + + PK ++ + RNI+ +
Sbjct: 554 GYINSFVSIYTQHRHKCIQVSSDGGRLCRPCIIVKHGKSLVKPKHIKDLERNITTFEDFL 613
Query: 596 QN--IELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQS 653
+ IE + E+ I C + TH EI +L V A L PY HNQS
Sbjct: 614 YDGLIEYLDVNEENDSLIACTESEINE-----DTTHLEIAEFAILGVCAGLIPYPHHNQS 668
Query: 654 PRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAI 713
PRN YQC M KQ +G + + R D +Y+L Q PIV+T D+ P G NAI
Sbjct: 669 PRNTYQCAMGKQAIGSIGENQRTRIDTVMYNLAYSQRPIVKTRAIELINYDKLPAGENAI 728
Query: 714 VAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKV-DR--GQKLFRRNK 770
VAV++Y+GYD+EDA+I NK+S+DRG +Y+ L N+ DR G + K
Sbjct: 729 VAVMSYSGYDIEDALIFNKASIDRGYGRCLVYRNAKCTLKKYANQTQDRIMGPSIDANTK 788
Query: 771 DAKSLHSVIDSDGLPYVGQMIH------------PGE---PYCSIYDKTTNSWRTNS--R 813
S H ++DSDG+ G+++ P E P S +T +R
Sbjct: 789 KPLSKHEILDSDGIAAPGELVENKTVMVNKSVPAPSENIGPVRSGNVQTQTEYRNAEIQY 848
Query: 814 KGSESVFVDYVAVDMKNSKNLPQKANIR--FRHTRNPIIGDKFSSRHGQKGVCSQLWPDI 871
KG +V+ V + SKN ++ R TR P IGDKFSSRHGQKGV +
Sbjct: 849 KGLVPAYVEKVMI----SKNAEDAFLVKLLLRQTRRPEIGDKFSSRHGQKGVIGLIVEQE 904
Query: 872 DMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
DMPF+ GM PD+I+NPH FPSRMT+ L+E +A K
Sbjct: 905 DMPFNDY-GMCPDIIMNPHGFPSRMTVGKLIEVLAGK 940
>gi|324120628|dbj|BAJ78705.1| RNA polymerase II second largest subunit [Teleogryllus emma]
Length = 1174
Score = 246 bits (628), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 249/944 (26%), Positives = 408/944 (43%), Gaps = 132/944 (13%)
Query: 34 MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVR---ERFNFGQFPVMLKTRRCHLQGADS 90
M + R ++Y+ L D+ + G + ++ G+ P+ML++ C L G
Sbjct: 108 MPNEARLRNLTYSAPLYVDITKTIIKDGEEPIETQHQKTFIGKIPIMLRSTYCLLNGLTD 167
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
+ L L E + GGYFI+NG E+V +I ++ ++ S +D + Y KA +
Sbjct: 168 RDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFSMKDGKYAY--KAEIRS 222
Query: 151 CVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
C+ + + TL + + G + G+ + +P+ IV +AL D +
Sbjct: 223 CLEHSSRPTSTLWVNMMARGGQSIKKSAIGQRIIAVLPYIKQEIPIMIVFRALGFVADRD 282
Query: 201 IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
I H+ +D+ P + E VK L E + + L IG +
Sbjct: 283 ILEHIIYDFDD-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGA--RGARP 327
Query: 261 GLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
G+ E A +++ + H+ ++ K L +M+ +L D+ D
Sbjct: 328 GVTKEKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 387
Query: 317 QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
N+ + L G L+ + ++ +++ + Q I + GK F+ LA IK +K
Sbjct: 388 GNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFI-DRGKDFNL-ELA-IK-------TK 437
Query: 377 QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
I + L TG Q Q RAG + RL F +S R V+ G +
Sbjct: 438 IITDGLRYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRVNSPIGRDG-KLA 495
Query: 437 SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
R+L WG +CP TP+G GL+ ++ ++ + IL L
Sbjct: 496 KPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYIS-----------VGSQPSPILEFL 544
Query: 497 IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAAS 550
M +L ++ S + ++G VG+ + E+++A LR+L+ VS S
Sbjct: 545 EEWSM-ENLEEIAPSAIADATKIFVNGCWVGI--HRDPEQLMATLRKLRRQMDIIVSEVS 601
Query: 551 VIPD--DLEVGYVPLSLGGAYPGLYLFTSPPKFVRPV------------RNISLPSEESQ 596
+I D D E+ ++T + RP+ R+I + E
Sbjct: 602 MIRDIRDREI--------------RIYTDAGRICRPLLIVENGNLLLKKRHIDMLKEREY 647
Query: 597 N------------IELIGPFEQ-VFMEIRCPDGGDGGRRNAF--PATHEEIHPTGMLSVV 641
N +E I E+ M PD + A+ TH EIHP +L V
Sbjct: 648 NNFGWQVLVASGVVEYIDTLEEETVMIAMSPDDLRQEKEYAYCMTYTHCEIHPAMILGVC 707
Query: 642 ANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKY 701
A++ P+ DHNQSPRN YQ M KQ MG + R D + L P P+V T +
Sbjct: 708 ASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYL 767
Query: 702 GIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT-ETIDLSDDGNKVD 760
E P G N+IVA+L YTGY+ ED++I+N S+V+RG +++ + + G++ +
Sbjct: 768 RFRELPAGINSIVAILCYTGYNQEDSVIMNASAVERGFFRSVFFRSYKDAESKRIGDQEE 827
Query: 761 RGQKLFRRNKDA--KSLHSVIDSDGL-----------PYVGQMIHPGEPYCSIYDKTTNS 807
+ +K R+ +L+ +D DG+ +G+ I + + T
Sbjct: 828 QFEKPTRQTCQGMRNALYDKLDDDGIISPGIRVSGDDVVIGKTITLPDNEDELEGTTKRY 887
Query: 808 WRTNSR---KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVC 864
+ ++ + SE+ VD V + + NS+ + IR R R P IGDKF+SRHGQKG C
Sbjct: 888 TKRDASTFLRNSETGIVDQVMLTL-NSEGY-KFCKIRVRSVRIPQIGDKFASRHGQKGTC 945
Query: 865 SQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
+ DMPF+ G+ PD+IINPHA PSRMTI L+E + K
Sbjct: 946 GIQYRQEDMPFT-CEGLTPDIIINPHAIPSRMTIGHLIECLQGK 988
>gi|324120620|dbj|BAJ78701.1| RNA polymerase II second largest subunit [Galloisiana yuasai]
Length = 1175
Score = 246 bits (628), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 253/945 (26%), Positives = 408/945 (43%), Gaps = 134/945 (14%)
Query: 34 MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVR---ERFNFGQFPVMLKTRRCHLQGADS 90
M + R ++Y+ L D+ L V ++ G+ P+ML++ C L G
Sbjct: 109 MPNEARLRNLTYSAPLYVDITKTILKENEEPVETQHQKTFIGKIPIMLRSTYCLLSGLTD 168
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
+ L L E + GGYFI+NG E+V +I ++ ++ S +D + + KA +
Sbjct: 169 RDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFSMKDGKFAF--KAEIRS 223
Query: 151 CVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
C+ + + TL + + G + G+ + +P+ IV +AL D +
Sbjct: 224 CLEHSSRPTSTLWVNMMARGGQSIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRD 283
Query: 201 IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
I H+ +D+ P + E VK L E + + L IG +
Sbjct: 284 ILEHIIYDFDD-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGA--RGARP 328
Query: 261 GLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
G+ E A +++ + H+ ++ K L +M+ +L D+ D
Sbjct: 329 GVTKEKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 388
Query: 317 QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
N+ + L G L+ + ++ +++ + Q I + GK F+ LA IK +K
Sbjct: 389 GNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFI-DRGKDFNL-ELA-IK-------TK 438
Query: 377 QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
I + L TG Q Q RAG + RL F +S R V+ G +
Sbjct: 439 IITDGLRYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRVNSPIGRDG-KLA 496
Query: 437 SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
R+L WG +CP TP+G GL+ ++ Y S G+ + IL L
Sbjct: 497 KPRQLHNTLWGMICPAETPEGAAVGLVKNLALMA-----YISVGS------QPSPILEFL 545
Query: 497 IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAAS 550
M +L ++ S + ++G VG+ + E+++A LR+L+ VS S
Sbjct: 546 EEWSM-ENLEEIAPSAIADATKIFVNGCWVGI--HRDPEQLMATLRKLRRQMDIIVSEVS 602
Query: 551 VIPD--DLEVGYVPLSLGGAYPGLYLFTSPPKFVRPV------------RNISLPSEESQ 596
+I D D E+ ++T + RP+ R+I + E
Sbjct: 603 MIRDIRDREI--------------RIYTDAGRICRPLLIVDGGNLLLKKRHIDMLKEREY 648
Query: 597 N------------IELIGPFEQ-VFMEIRCPDGGDGGRRNAFPAT--HEEIHPTGMLSVV 641
N +E I E+ M PD + A+ T H EIHP +L V
Sbjct: 649 NNYGWQVLVASGVVEYIDTLEEETVMIAMSPDDLRQDKEYAYCTTYTHCEIHPAMILGVC 708
Query: 642 ANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKY 701
A++ P+ DHNQSPRN YQ M KQ MG + R D + L P P+V T +
Sbjct: 709 ASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYL 768
Query: 702 GIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT----ETIDLSDDGN 757
E P G N+IVA+L YTGY+ ED++I+N S+V+RG +++ E+ + D
Sbjct: 769 RFRELPAGINSIVAILCYTGYNQEDSVIMNASAVERGFFRSVFFRSYKDAESKRIGDQEE 828
Query: 758 KVDRGQKLFRRNKDAKSLHSVIDSDGL-----------PYVGQMIHPGEPYCSIYDKTTN 806
+ ++ +L + +L+ +D DG+ +G+ I E + T
Sbjct: 829 QFEKPTRLTCQGM-RNALYDKLDDDGIISPGIRVSGDDVVIGKTITLPENDDELEGATKR 887
Query: 807 SWRTNSR---KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGV 863
+ ++ + SE+ VD V + + NS+ + IR R R P IGDKF+SRHGQKG
Sbjct: 888 YTKRDASTFLRNSETGIVDQVMLTL-NSEGY-KFCKIRVRSVRIPQIGDKFASRHGQKGT 945
Query: 864 CSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
C + DMPF+ G+ PD+IINPHA PSRMTI L+E + K
Sbjct: 946 CGIQYRQEDMPFT-CEGLTPDIIINPHAIPSRMTIGHLIECLQGK 989
>gi|324120664|dbj|BAJ78723.1| RNA polymerase II second largest subunit [Inocellia japonica]
Length = 1175
Score = 246 bits (627), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 251/944 (26%), Positives = 408/944 (43%), Gaps = 132/944 (13%)
Query: 34 MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVR---ERFNFGQFPVMLKTRRCHLQGADS 90
M + R ++Y+ L D+ + G + ++ G+ P+ML++ C L G
Sbjct: 109 MPNEARLRNLTYSAPLYVDITKTIIKDGDDPIETQHQKTFIGKIPIMLRSTYCLLSGLTD 168
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
+ L L E + GGYFI+NG E+V +I ++ ++ S +D + Y KA +
Sbjct: 169 RDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFSMKDSKYAY--KAEIRS 223
Query: 151 CVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
C+ + + +L + + G + G+ + +P+ IV +AL D +
Sbjct: 224 CLEHSSRPTSSLWVNMMARGGQAIKKAAIGQRIIAILPYIRQEIPIMIVFRALGFVADRD 283
Query: 201 IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
I H+ +D+ P + E VK L E + + L IG +
Sbjct: 284 ILEHIIYDFDD-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGA--RGARP 328
Query: 261 GLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
G+ E A +++ + H+ ++ K L +M+ +L D+ D
Sbjct: 329 GVTKEKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 388
Query: 317 QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
N+ + L G L+ + ++ +++ + Q I+ GK F+ +LA IK +K
Sbjct: 389 GNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFIDR-GKDFNL-DLA-IK-------TK 438
Query: 377 QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
I + L TG Q Q RAG + RL F +S R V+ G +
Sbjct: 439 MITDGLRYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRVNSPIGRDG-KLA 496
Query: 437 SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
R+L WG +CP TP+G GL+ ++ ++ + IL L
Sbjct: 497 KPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYIS-----------VGSQPSPILEFL 545
Query: 497 IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAAS 550
M +L ++ S + ++G VG+ + E+++A LR+L+ VS S
Sbjct: 546 EEWSM-ENLEEIAPSAIADATKIFVNGCWVGI--HRDPEQLMATLRKLRRQMDIIVSEVS 602
Query: 551 VIPD--DLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNIS-------------LPSEES 595
+I D D E+ ++T + RP+ + L E
Sbjct: 603 MIRDIRDREI--------------RIYTDAGRICRPLLIVENGNLLLKKSHVDMLKDREY 648
Query: 596 QN-----------IELIGPFEQ-VFMEIRCPDGGDGGRRNAF--PATHEEIHPTGMLSVV 641
N +E I E+ M P+ + NA+ TH EIHP +L V
Sbjct: 649 NNYGWQVLVASGVVEYIDTLEEETVMIAMSPEDLRQDKENAYCNTYTHCEIHPAMILGVC 708
Query: 642 ANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKY 701
A++ P+ DHNQSPRN YQ M KQ MG + R D + L P P+V T +
Sbjct: 709 ASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYL 768
Query: 702 GIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDD-GNKVD 760
E P G N+IVA+L YTGY+ ED++ILN S+V+RG Y++ S G++ +
Sbjct: 769 RFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDSESKRIGDQEE 828
Query: 761 RGQKLFRRN-KDAKSLH-SVIDSDGL-----------PYVGQMIHPGEPYCSIYDKTTNS 807
+ +K R+ + ++ H +D DG+ +G+ I E + T
Sbjct: 829 QFEKPTRQTCQGMRNAHYDKLDDDGIISPGIRVSGDDVVIGKTIMLPENEDELEGTTKRY 888
Query: 808 WRTNSR---KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVC 864
+ ++ + SE+ VD V + + NS+ + IR R R P IGDKF+SRHGQKG C
Sbjct: 889 TKRDASTFLRNSETGVVDQVMLTL-NSEGY-KFCKIRVRSVRIPQIGDKFASRHGQKGTC 946
Query: 865 SQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
+ DMPF+ G+ PD+IINPHA PSRMTI L+E + K
Sbjct: 947 GIQYRQEDMPFT-CEGLTPDIIINPHAIPSRMTIGHLIECIQGK 989
>gi|145521170|ref|XP_001446440.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124413918|emb|CAK79043.1| unnamed protein product [Paramecium tetraurelia]
Length = 1131
Score = 246 bits (627), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 245/927 (26%), Positives = 411/927 (44%), Gaps = 113/927 (12%)
Query: 32 SEMFDH-CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADS 90
S ++ H CR +Y G + +V ++ P+ + G+ P+ML +++C+L G
Sbjct: 79 SLLYPHECRLNDQTYAGDIYVNVRI-HMKGREPIEEKDVLIGRMPIMLGSKKCNLSGKTE 137
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
++ E + GYFI+ G E+V IL + + + ++ + Y +
Sbjct: 138 AEIFQYGECPYDPKGYFIIEGNEKV----ILILEQVVDNRIIVDVDNKTDQYVSTVQSYQ 193
Query: 151 CVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYL-LPVGIVLKALVDTNDLEIFNHLTCCY 209
K ++S+ LK + F+++ + P+ IV KAL ND EI
Sbjct: 194 LETKSKASIILK---------KNKFYVKSSSFKDAPLFIVFKALGIVNDKEIIE------ 238
Query: 210 DEKYKKEKGAVGS-PLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYY 268
+G+ P + E++ + + D + T+L LQ+IG+ G QS +
Sbjct: 239 ---------LIGTEPSIVEKLLMSFQDSSDEKIKTQLDALQYIGKLITSKFGG-QSSNLA 288
Query: 269 AVAETVIRDYIFVHLN----DNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLP 324
A + H+N D K L M+++L ++ D+ D N+ +
Sbjct: 289 DQAREKLAQVFLAHVNCKKYDFYPKAIYLGQMVRRLILAMEDKRFVDDKDYYGNKRMRCA 348
Query: 325 GHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIET 384
G+L+ + ++ + +++ E+ GK F ++ M K I +
Sbjct: 349 GNLLELLFEDLFKGLNSTISSILKKEL---GKANCKFTPKDVTMKM-KEFGVDITKGLNR 404
Query: 385 MLKTGRLATQT-GLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLP 443
+KTG+ Q +D R G T R+++ + + R L+ + R L+
Sbjct: 405 AIKTGKWTIQRFHMD---RQGVTQLLARISYTSALGMLTKM-RSQVQKTLKVSGPRALVG 460
Query: 444 ESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIP 503
+G +CP TPDGE CGL+ + + ++ +I+D S+ ++++ +G +
Sbjct: 461 SQFGMICPADTPDGEDCGLVKTLALLTHI-----TQEDIQD------SVYKIILSMG-VE 508
Query: 504 SLPKLVKSGPPAVLSVLLDGRVVGV--IPSSEIEKVVAHLRRLKVSA-ASVIPDDLE--V 558
+ S V L+G +VG+ P ++++ RR K++ S+ DDL V
Sbjct: 509 DICHFKPSEFHKNYIVYLNGIIVGMHARPQEFVDQLRILRRRGKINEFVSIHKDDLRKVV 568
Query: 559 GYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNI--ELIGPFEQVFMEIRCPDG 616
S P + + P+ ++ + I +++ + + + ++++ D
Sbjct: 569 NISGDSGRLVRPLILVKDGKPQLIQ-IDMIDFKQNDAKTVFSSFVKNGKIEYLDVNESD- 626
Query: 617 GDGGRRNAFPA----------THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQT 666
NAF A TH EI +LS V L P+ HNQS RN +QCQM KQ+
Sbjct: 627 ------NAFIALTINDVTMETTHLEIDQMTILSCVTGLVPFPHHNQSARNTFQCQMGKQS 680
Query: 667 MGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMED 726
+G + R D +LY L PQTP+VRT + P G NA VAV++Y+ YD+ED
Sbjct: 681 LGIIGMNTQIRCDTQLYQLIYPQTPLVRTVSMEAVNQHRLPAGHNAQVAVMSYSCYDIED 740
Query: 727 AMILNKSSVDRGMCHGQIYQTETIDLS-DDGNKVDRGQKLF---------RRNKDAKSLH 776
A+I+NKSS+DRG +Y+ + + NK R + + K K H
Sbjct: 741 ALIMNKSSLDRGFGRTAVYKKSVTECEINQRNKESRFNERIDEPPTKTHNTKKKFIKKYH 800
Query: 777 SVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSR------KGSESVF-------VDY 823
+ +D+DG+ VG +H G+ Y +K T N + + SVF VD
Sbjct: 801 A-LDNDGITKVGAQLHHGDIYV---NKKTPQVPDNPQTENIQIADTPSVFKEKWPYTVDR 856
Query: 824 VAVDMKNSKNLPQKANIR--FRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGM 881
V + + + I+ FR R P GDKFSSRHGQKGV + DMPF+ G
Sbjct: 857 VLIINNTNDGTEKIKTIKTIFRQIRRPEFGDKFSSRHGQKGVVGLIVNQEDMPFNE-RGW 915
Query: 882 RPDLIINPHAFPSRMTIAMLLESVAAK 908
PDLI+NPH +PSRMTIA L+E + K
Sbjct: 916 CPDLIMNPHGYPSRMTIAKLMELLCGK 942
>gi|391325293|ref|XP_003737173.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like
[Metaseiulus occidentalis]
Length = 1162
Score = 246 bits (627), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 262/1000 (26%), Positives = 417/1000 (41%), Gaps = 181/1000 (18%)
Query: 7 ADFEPLRELVRHHIESFDYMLDEGLSEMFD------------------------------ 36
A+F + LV HHI SFDY ++ + E+ +
Sbjct: 41 AEFLKTKGLVLHHIASFDYFVETEMREILEANAIVYSEADPNWYMEYTDIRIGTPSIVEG 100
Query: 37 ----------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQ 86
CR ++Y + D+ Y V+R G+ P+MLK++ C L
Sbjct: 101 PGMIAATTPYQCRLRDMTYFAPIYVDIA--YKRGNELVIRNELEIGRMPIMLKSKGCVLH 158
Query: 87 GADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKA 146
+L L+E + GGYFI+ G+ERV V++ +Q ++ R + +G
Sbjct: 159 SKTPWELTKLRECPNDHGGYFIVKGVERV---VLMAEQ---LANNRILIDEDSKG----- 207
Query: 147 VVIRCV-------RKDQSSVTLKLYYLLNGSVRLGFWLQGKEYL--LPVGIVLKALVDTN 197
VI C RK +++V K NG F+++ ++ +PV ++ +A+ N
Sbjct: 208 -VISCQVTSSTHERKSRTNVIEK-----NGK----FYVKHNSFVDDIPVVVMFRAMGVQN 257
Query: 198 DLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQP 257
DL I H +E + VGS + E L + T+ Q L+ + +
Sbjct: 258 DLRI--HQMIGTEENI--QVAFVGS----------MVECHKLHVFTQEQALRFLAAKMKS 303
Query: 258 VIDGLQS------ESYYAVAETVIRDYIFVHLNDNNDKFNL------LIFMLQKLFSLVD 305
+ G Q +++ AV +VI H+ ++N+ L M++++
Sbjct: 304 RVFGPQKVEDPLDKAWEAVLSSVIN-----HIPAQPPEYNMRLRAHYLGLMVRRIIQAKY 358
Query: 306 HTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLAN 365
D+ D N+ + LPG +I++ L E L + K I D K+ +
Sbjct: 359 DRGFIDDRDYYGNKRVELPGSMISL-LFEDLLKRVNSELKTIAD------KQIPMMRVTQ 411
Query: 366 IKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVH 425
V PS I T + + TG + ++ G T RLN++ + V+
Sbjct: 412 FDIVKFMKPST-ITTGLINAISTGNWIIRR-FNMHT-IGVTQVLSRLNYISCLGMMTRVN 468
Query: 426 RGASFAGLRTTS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRD 484
+ F R S R L P +G LCP TP+GE CGL+ +M + +S ++ D
Sbjct: 469 --SHFEKSRKVSGPRSLQPSQFGMLCPSDTPEGEACGLVKNMALLAHIT--INSSADLTD 524
Query: 485 F-SKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSE--IEKVVAHL 541
F + +R+L G S + V +G + GVI IE+V
Sbjct: 525 FFISLGVQDVRLLCGAEFSHS----------HIYHVFHNGVIKGVIEDHRRFIEEVRQFR 574
Query: 542 RRLKVSA-ASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRP---VRNISLPSEESQN 597
R+ +S SV P+ + + +Y+ T +F RP V N P S++
Sbjct: 575 RKGFLSPYLSVYPNHI------------HRCVYIVTDGGRFCRPFIIVEN-ERPRVTSEH 621
Query: 598 IELIGPFE---QVFMEIRCPDGGDGGRRN-AFPA----------THEEIHPTGMLSVVAN 643
+E + Q F++I + D N A A TH EI P +LS A
Sbjct: 622 LEDLNSHILNFQDFLDIGLVEFLDVNEENDALIAVYEKDITDKTTHLEIAPFTILSACAG 681
Query: 644 LTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGI 703
+ P+ HNQSPRN YQC M KQ MG R D Y++ PQ P+V T
Sbjct: 682 IIPFPHHNQSPRNTYQCAMGKQAMGVIGYNQHMRIDTLQYNMVFPQRPLVSTKAIKLINF 741
Query: 704 DEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQ 763
D P G N +AV++Y+GYD+EDA++LNK+S++RG ++ ++ L N
Sbjct: 742 DRMPAGQNVCLAVMSYSGYDIEDAIVLNKNSMERGFGECRVVTSQKCQLRRYPNMA--CD 799
Query: 764 KLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDY 823
++ DA + + D L Y G ++ PGE + ++Y
Sbjct: 800 RILGPLVDASTRKPIFDHQCLDYDG-IVMPGETVVKGQVLINRHIPAGTASLDPGQPIEY 858
Query: 824 VAVDMKNSKNLPQKAN---------------IRFRHTRNPIIGDKFSSRHGQKGVCSQLW 868
+ ++ +P + + + TR P IGDKFSSRHGQKGV +
Sbjct: 859 KEMPLRYQGTVPAQIDRVMVSVNADGETLFKVVMSQTRKPEIGDKFSSRHGQKGVVGLIV 918
Query: 869 PDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
DMPF G+ PD+I+NPH FPSRMT+ ++E +A K
Sbjct: 919 GQEDMPFDD-QGVVPDIIMNPHGFPSRMTVGKMIEILAGK 957
>gi|308497698|ref|XP_003111036.1| hypothetical protein CRE_04747 [Caenorhabditis remanei]
gi|308242916|gb|EFO86868.1| hypothetical protein CRE_04747 [Caenorhabditis remanei]
Length = 1154
Score = 246 bits (627), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 253/949 (26%), Positives = 416/949 (43%), Gaps = 135/949 (14%)
Query: 28 DEGLSEMFD-----HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRR 82
+EGL+ D CR ++Y+ + D+E Y V ++ G+ P+ML++ +
Sbjct: 90 EEGLNMTHDKITPQECRLRDMTYSAPISVDIE--YTRGNQRVFKKDLIIGRMPIMLRSSK 147
Query: 83 CHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGY 142
C L+ ++L ++E + GGYF++ G E+V IL ++ + + R+ +
Sbjct: 148 CILRDLAEEELARVQECPYDPGGYFVVKGSEKV----ILIQEQLSKNRIMVG-RNSSKEL 202
Query: 143 TDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIF 202
+ + RK ++ VT+K SVR +PV I+ KA+ +D +I
Sbjct: 203 QCEVLSSTSERKSKTYVTMKKGKY---SVRHNQLTDD----VPVSIIFKAMGVESDYDIV 255
Query: 203 NHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHI-----GEHFQP 257
+ T ++EKY VS + L E + + T+ Q L ++ F P
Sbjct: 256 S--TIGHEEKY-----------VSAFAQT-LEECINAGVYTQQQALAYVTSKVKARKFTP 301
Query: 258 VIDGLQSESYYAV-------AETVIRDYIFVHLNDNNDKFNL----LIFMLQKLFSLVDH 306
L S + A + + + H+ + F + L M ++L
Sbjct: 302 -FGSLPGTSVSVLTPPKEHEAVDFLSNSMITHIACPDGNFKMKAIYLGLMTRRLIQTELG 360
Query: 307 TSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANI 366
+ D+ D N+ + L G L+ + ++ + + + K+ I +N +I
Sbjct: 361 ENELDDRDFYGNKRLELAGSLLALLFEDVFKRFNSELKR-----IADNALMKTMAAPLDI 415
Query: 367 KKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHR 426
K M ++ I +I + TG + +R G T RL+++ + ++
Sbjct: 416 VKHMRQD---MITNTIVNAMSTGNWIIKRFR--MERLGVTQVLSRLSYISALGMMTRIN- 469
Query: 427 GASFAGLRTTS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDF 485
++F R S R L P WG LCP TP+GE CGL+ ++ + + D +
Sbjct: 470 -STFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALISHITTDSDEK------ 522
Query: 486 SKMRTSILRVLIGVGMIPSLPKLVKS--GPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRR 543
+LR+L+ G + L + S P + L+G ++G + + E+VV +R
Sbjct: 523 -----PVLRLLLNSG-VEDLHNVHFSHVNKPENTLIFLNGVLIGT--AVDPERVVRAVRD 574
Query: 544 LKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRP---VRNISLPSEESQNIEL 600
L+ S L +V +S +++ + + RP V+N P +++
Sbjct: 575 LRRSG-------LLSEFVSVSRSITNRSVFISSDGGRLCRPYIIVKN-GKPMLTQDHVQQ 626
Query: 601 IGPFEQVFMEIRCPDGG-----DGGRRN-AFPA----------THEEIHPTGMLSVVANL 644
+ +++F + D G D N A A TH EI P +L V A L
Sbjct: 627 LKEGKRIFEDF--VDDGIVEYLDVNEMNDALIAVYEKEIGPETTHLEIEPFTLLGVCAGL 684
Query: 645 TPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGID 704
PY HNQSPRN YQC M KQ MG + R D +Y L PQ P+V++ T +
Sbjct: 685 IPYPHHNQSPRNTYQCAMGKQAMGTIAYNQQKRIDSIMYLLCYPQRPLVKSKTIELTNFE 744
Query: 705 EYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKV-DR-- 761
+ P G N I+AV++Y+GYD+EDA++LNK+S+DRG +Y+ + N+ DR
Sbjct: 745 KLPAGANGIIAVMSYSGYDIEDALVLNKASLDRGYGRCLVYKHVKGTVRKYPNQTFDRLL 804
Query: 762 GQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGE-------PYCSIYDKTTNSWRTNSRK 814
G L + S H +D +G+ + G I P + P S S N+
Sbjct: 805 GPALDPNTRLPISKHKNLDQEGIVFAGARILPKQTIINKHMPVVSGESGPGPSASANT-I 863
Query: 815 GSESVFVDYVAVDMKNSKNLPQKA---------------NIRFRHTRNPIIGDKFSSRHG 859
G VDY V + P A + R TR P +GDKFSSRHG
Sbjct: 864 GIAGRQVDYKDVSISYKTPTPSYAERVLLTYNEDEAHLIKVLLRQTRRPELGDKFSSRHG 923
Query: 860 QKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
QKGVC + DMPF+ + GM PD+I+NPH +PSRMT+ L+E ++ K
Sbjct: 924 QKGVCGLIAQQEDMPFNDL-GMVPDMIMNPHGYPSRMTVGKLMELLSGK 971
>gi|300707573|ref|XP_002995989.1| hypothetical protein NCER_100983 [Nosema ceranae BRL01]
gi|239605241|gb|EEQ82318.1| hypothetical protein NCER_100983 [Nosema ceranae BRL01]
Length = 1143
Score = 245 bits (626), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 257/945 (27%), Positives = 404/945 (42%), Gaps = 149/945 (15%)
Query: 36 DHCRQAKISYTGKLMADVEFQYLDAGSPVVRE----RFNFGQFPVMLKTRRCHLQGADSQ 91
+ R I+Y +L D+ + ++ S VV + R FG PVM+K+ C +
Sbjct: 93 NEARLRDITYLSQLYIDI-VKTTESESGVVDQHRYSRIPFGSLPVMVKSSYCSTYKLSEE 151
Query: 92 KLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRC 151
+L+ + E ++GGYFI+NG E+V I+ ++ + + + + Y+ A IR
Sbjct: 152 ELIKIGECEYDVGGYFIINGSEKV----IIAQERMASNTIYVFKKSQPASYSHYAE-IRS 206
Query: 152 V----RKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTC 207
V K+ S+V+LKL N +R+ +E +P+ I+ +AL +D EI +H+
Sbjct: 207 VPEKGAKNPSAVSLKLCRNPN-VIRVSIPYAKQE--IPLFIIYRALGFLSDKEITDHIIT 263
Query: 208 CYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESY 267
D++ L+ E + + A VQD ++ L +IG+ PV G E
Sbjct: 264 TNDDEM--------FDLLKESI-LESAVVQDQNVA-----LDYIGKRAAPV--GSSREKR 307
Query: 268 YAVAETVIRDYIFVHLNDN----NDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILL 323
A+ ++ + H+ K L +M+QKL + D+ D + + L
Sbjct: 308 INFAKDLLAKELLPHIGTQEFCETKKAYFLGYMVQKLLLVALGRKREDDRDHYGKKRMDL 367
Query: 324 PGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIE 383
G L+ + + + K +Q IE FN+A +G
Sbjct: 368 AGPLLASLFRSLYKKLCSETAKHMQKCIEGGRD----FNIA-------------LGLKAS 410
Query: 384 TMLKTGRLATQTG------LDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS 437
T+ + R A TG +Q +AG R NF+ +S R V+ G +
Sbjct: 411 TIAQGFRYAIATGNWGDQAHAMQSKAGVAQVLNRYNFVSTLSHLRRVNTPIEKEG-KLAK 469
Query: 438 VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLI 497
R+L WG +CP TP+G+ CGL+ +++ Y S G+ + I+ L
Sbjct: 470 PRQLHNTHWGMICPAETPEGQACGLVKNLSLMA-----YISVGSSSE------PIVEFLE 518
Query: 498 GVGMIPSLPKLVKSGPPAVLSVLLDGRVVGV--IPSSEIEKVVAHLRRLKVSAASVIPDD 555
G+ SL ++ V ++G VG+ P I + R L++ I D
Sbjct: 519 ECGL-ESLEEISHLQLQNATKVFVNGVWVGIHEDPEYLISSLRMLRRTLEIDKEVSIIRD 577
Query: 556 LEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN------------------ 597
+ + + P LF V+N L +E+ +
Sbjct: 578 IREKEIKIQSDSGRPCRPLFV--------VKNNKLCIDEAYSNKEEIKRCTWNDFIENGL 629
Query: 598 IELIG-PFEQVFMEIRCPDGGDGGRRNAFPA-------THEEIHPTGMLSVVANLTPYSD 649
IE + E+V M PD + +++ + TH EIHP +L + A++ P+ D
Sbjct: 630 IEFLDVEEEEVSMIAMSPDQLNSVKKDLRASEDLNINYTHCEIHPATILGICASVIPFPD 689
Query: 650 HNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTG 709
HNQSPRN YQ M KQ MG R D L PQ P+V T + E P G
Sbjct: 690 HNQSPRNTYQSAMVKQAMGIYATNFMLRMDTLSNILFYPQKPLVTTKSMEYIRFKELPPG 749
Query: 710 TNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETID-------LSDDGNKVDRG 762
NAIVA+ +YTGY+ ED++I+N+S++DRG+ Y+T T ++ K R
Sbjct: 750 QNAIVAIASYTGYNQEDSIIMNQSAIDRGLFRSFFYRTYTDQENTTRPGTHEEFCKPLRS 809
Query: 763 QKLFRRNKDAKSLHSVIDSDGLPYVGQMI-------------------HPGEPYCSIYDK 803
+ + RN + +S +D+DG+ G + G P D
Sbjct: 810 EVIRMRNLN----YSKLDNDGIIPTGTRVTGDDVLIGKVSPILDPERSTKGNPVYLKKDS 865
Query: 804 TTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGV 863
+T+ RT E FVD V V K A ++ R R P +GDKF+SRH QKG
Sbjct: 866 STSMRRT------EDGFVDSVIVTNKEGYKF---AKVKVRSCRIPQMGDKFASRHAQKGT 916
Query: 864 CSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
DMPF+ G+ PD+IINPHA PSRMTI L+E + K
Sbjct: 917 VGITLNQEDMPFTS-EGIVPDIIINPHAIPSRMTIGHLIECLMGK 960
>gi|324120604|dbj|BAJ78693.1| RNA polymerase II second largest subunit [Thermobia domestica]
Length = 1175
Score = 245 bits (626), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 247/934 (26%), Positives = 402/934 (43%), Gaps = 112/934 (11%)
Query: 34 MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVR---ERFNFGQFPVMLKTRRCHLQGADS 90
M + R ++Y+ L D+ + G V ++ G+ P+ML++ C L G
Sbjct: 109 MPNEARLRNLTYSAPLYVDITKTVIKEGEDPVETQHQKTFIGKIPIMLRSTYCLLNGLTD 168
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
+ L L E + GGYFI+NG E+V +I ++ ++ S +D + Y KA +
Sbjct: 169 RDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFSMKDSKYAY--KAEIRS 223
Query: 151 CVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
C+ + + TL + + G + G+ + +P+ IV +AL D +
Sbjct: 224 CLEHSSRPTSTLWVNMMARGGQSIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRD 283
Query: 201 IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
I H+ +D+ P + E VK L E + + L IG +
Sbjct: 284 ILEHIIYDFDD-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGA--RGARP 328
Query: 261 GLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
G+ E A+ +++ + H+ ++ K L +M+ +L D+ D
Sbjct: 329 GVTKEKRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 388
Query: 317 QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
N+ + L G L+ + ++ +++ + Q I + GK F+ LA IK +K
Sbjct: 389 GNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFI-DRGKDFNL-ELA-IK-------TK 438
Query: 377 QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
I ++ L TG Q L RAG + RL F +S R V+ G +
Sbjct: 439 IITDGLKYSLATGNWGDQKKAHLA-RAGVSQVLNRLTFASTLSHLRRVNSPIGRDG-KLA 496
Query: 437 SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
R+L WG +CP TP+G GL+ ++ ++ + IL L
Sbjct: 497 KPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYIS-----------VGSQPSPILEFL 545
Query: 497 IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAAS 550
M +L ++ S + ++G VG+ + E+++A LR+L+ VS S
Sbjct: 546 EEWSM-ENLEEIAPSAIADATKIFVNGCWVGI--HRDPEQLMATLRKLRRQMDIIVSEVS 602
Query: 551 VIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN------------I 598
+I D + + G L K + R+I + E N +
Sbjct: 603 MIRDIRDREIRIYTDAGRICRPLLIVDNGKLLLKKRHIDMLKEREYNNYGWQVLVASGVV 662
Query: 599 ELIGPFEQ-VFMEIRCPDGGDGGRRNAFPAT--HEEIHPTGMLSVVANLTPYSDHNQSPR 655
E I E+ M PD + A+ T H EIHP +L V A++ P+ DHNQSPR
Sbjct: 663 EYIDTLEEETVMIAMSPDDLRQDKEYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPR 722
Query: 656 NMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVA 715
N YQ M KQ MG + R D + L P P+V T + E P G N++VA
Sbjct: 723 NTYQSAMGKQAMGVYITNYHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSVVA 782
Query: 716 VLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNK--VDRGQKLFRRNKDA- 772
+ YTGY+ ED++I+N S+V+RG +++ D +K D+ ++ R ++
Sbjct: 783 IACYTGYNQEDSVIMNASAVERGFFRSVFFRS----YKDAESKRFCDQEEQFERPTRNTC 838
Query: 773 ----KSLHSVIDSDGLPYVGQMIHPGE----PYCSIYDKTTNSWRTNSR----------K 814
+++ +D DG+ G + + ++ D T R +
Sbjct: 839 QGMRNAIYDKLDDDGIIAPGVRVSGDDVVIGKTITLPDNEDELEGTTKRYTKRDASTFLR 898
Query: 815 GSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMP 874
SE+ VD V + + NS+ + IR R R P IGDKF+SRHGQKG C + DMP
Sbjct: 899 NSETGIVDQVMITL-NSEGY-KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMP 956
Query: 875 FSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
F+ G+ PD+IINPHA PSRMTI L+E + K
Sbjct: 957 FT-CEGITPDIIINPHAIPSRMTIGHLIECLQGK 989
>gi|324120676|dbj|BAJ78729.1| RNA polymerase II second largest subunit [Stenopsyche marmorata]
Length = 1174
Score = 245 bits (626), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 254/945 (26%), Positives = 406/945 (42%), Gaps = 134/945 (14%)
Query: 34 MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVR---ERFNFGQFPVMLKTRRCHLQGADS 90
M + R ++Y+ L D+ + G + ++ G+ P+ML++ C L G
Sbjct: 107 MPNEARLRNLTYSAPLYVDITKTIVKEGEDPIETQHQKTFIGKIPIMLRSTYCLLNGLID 166
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
+ L L E + GGYFI+NG E+V +I ++ ++ S +D + + KA +
Sbjct: 167 RDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFSMKDGKFAF--KAEIRS 221
Query: 151 CVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
C+ + + TL + + G + G+ + +P+ IV +AL D +
Sbjct: 222 CLEHSSRPTSTLWVNMMSRGGQSIKKNAIGQRIIAIVPYIKQEIPIMIVFRALGFVADRD 281
Query: 201 IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
I H+ +D+ P + E VK L E + + L IG +
Sbjct: 282 ILEHIIYDFDD-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGA--RGARP 326
Query: 261 GLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
G+ E A +++ + H+ ++ K L +M+ +L D+ D
Sbjct: 327 GVTKEKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 386
Query: 317 QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
N+ + L G L+ + ++ +++ + Q I + GK F+ LA IK +K
Sbjct: 387 GNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFI-DRGKDFNL-ELA-IK-------TK 436
Query: 377 QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
I + L TG Q Q RAG + RL F +S R V+ G +
Sbjct: 437 IITDGLRYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRVNSPIGRDG-KLA 494
Query: 437 SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
R+L WG +CP TP+G GL+ ++ ++ + IL L
Sbjct: 495 KPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYIS-----------VGSQPSPILEFL 543
Query: 497 IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAAS 550
M +L ++ S + ++G VG+ + E+++A LR+L+ VS S
Sbjct: 544 EEWSM-ENLEEIAPSAIADATKIFVNGCWVGI--HRDPEQLMATLRKLRRQMDIIVSEVS 600
Query: 551 VIPD--DLEVGYVPLSLGGAYPGLYLFTSPPKFVRPV------------RNISLPSEESQ 596
+I D D E+ ++T + RP+ R+I + E
Sbjct: 601 MIRDIRDREI--------------RIYTDAGRICRPLLIVDNGILLLKKRHIDMLKERDL 646
Query: 597 N------------IELIGPFEQ-VFMEIRCPDGGDGGRRNAFPAT--HEEIHPTGMLSVV 641
N +E I E+ M PD + A+ T H EIHP +L V
Sbjct: 647 NNYSWQVLVASGVVEYIDTLEEETVMIAMSPDDLRQEKEYAYCTTYTHCEIHPAMILGVC 706
Query: 642 ANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKY 701
A++ P+ DHNQSPRN YQ M KQ MG + R D + L P P+V T +
Sbjct: 707 ASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYL 766
Query: 702 GIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDD-GNKVD 760
E P G N+IVA+L YTGY+ ED++ILN S+V+RG Y++ S G++ +
Sbjct: 767 RFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDSESKRIGDQEE 826
Query: 761 RGQKLFRRNKDA--KSLHSVIDSDGL-----------PYVGQMIHPGEPYCSIYDKTTNS 807
+ +K R +L+ +D DG+ +G+ I E + D TT
Sbjct: 827 QFEKPTRTTCQGMRNALYDKLDDDGIIAPGIRVSGDDVVIGKTITLPENDDEL-DGTTKR 885
Query: 808 WRTNSR----KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGV 863
+ + SE+ VD V + + NS+ + IR R R P IGDKF+SRHGQKG
Sbjct: 886 YTKRDASTFLRNSETGIVDQVMLTL-NSEGY-KFCKIRVRSVRIPQIGDKFASRHGQKGT 943
Query: 864 CSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
C + DMPF+ G+ PD+IINPHA PSRMTI L+E + K
Sbjct: 944 CGIQYRQEDMPFT-CEGLTPDIIINPHAIPSRMTIGHLIECIQGK 987
>gi|47156951|gb|AAT12334.1| DNA-directed RNA polymerase III subunit 2 130KDa subunit
[Antonospora locustae]
Length = 1014
Score = 245 bits (626), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 242/895 (27%), Positives = 394/895 (44%), Gaps = 90/895 (10%)
Query: 36 DHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADS----- 90
+ CR ++Y G + D+E Y ++++ G+ P+ML++ CHL+
Sbjct: 9 EECRLRDLTYCGNIYVDIE--YTKHRKVIIKKNVFIGKVPIMLRSMLCHLEEKRDDCETV 66
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
++ +E +MGGYFI+ G+ERV IL ++ + + + ++ +T
Sbjct: 67 RETYGHRECPLDMGGYFIVKGVERV----ILIQEQLSKNRIIADIDNKGCKFTSVTSSTH 122
Query: 151 CVRKDQSSVTLK--LYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCC 208
+K ++S+ LK L YL N +P IVLKAL +D EI
Sbjct: 123 -DKKSKTSIILKKRLLYLKNNVFTDS---------VPAVIVLKALGMVSDCEI------- 165
Query: 209 YDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYY 268
++ ++GA+ E ++ L + T+LQ L I + +P Q+ S
Sbjct: 166 --AEFVGQEGAL-----LEMLEPSLEHALQTGVHTQLQALDFISKLTRP----RQNVSRI 214
Query: 269 AVAETVIRDYIFVHL-NDNND---KFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLP 324
A T++ + + ++ ND D K + M++ L + D+ D L N+ L
Sbjct: 215 DEARTILYEVVLPNIPNDGIDMRRKAITVAIMIRVLLQAELNMISMDDIDFLGNKRFELA 274
Query: 325 GHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIET 384
G+L++I ++ + + KK I + + + D L + ++ N I S
Sbjct: 275 GNLLSILFEDTFLRFNSELKKSIDKVLSKSQRTQDLDALTFLN--LQVN---LISNSFVR 329
Query: 385 MLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLLP 443
+ TG + +RAG T RL+++ I + + F R S R L
Sbjct: 330 AISTGNWTVRRFR--MERAGVTQVLSRLSYIAMIGSMAKIQ--SQFEKTRKISGPRSLHT 385
Query: 444 ESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIP 503
SWG LCP TP+GE CGL+ ++ + + D + L +GV
Sbjct: 386 SSWGMLCPADTPEGESCGLVKNLAILAEITT---------DVPQSDVEQLLFQLGVRDFR 436
Query: 504 SLPKLVKSGPPAVLSVLLDGRVVGVIPSSE--IEKVVAHLRRLKVSA-ASVIPDDLEVGY 560
+ + + L + L+G +VG+ ++ + K V RR VS SV +D +
Sbjct: 437 TCSGIDFYSKHSYL-IFLNGTIVGICYNNNTLVRKFVEMRRRGVVSQFVSVYKNDEKRTI 495
Query: 561 VPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN-IELIGPFEQVFMEIRCPDGGDG 619
+ GG + + + ++ L +N +L + F+++ +
Sbjct: 496 SIATDGGRICRPLIIVENGRQMLEHEDLELLRRRYKNPDDLFKEGKVEFLDVNEENNTKI 555
Query: 620 GRRNA---FPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKF 676
R + TH EI +L VA L PY HNQSPRN YQC M KQ MGF
Sbjct: 556 ALRESNICRSTTHLEICEYSILGCVAGLIPYPHHNQSPRNTYQCAMGKQAMGFVALNQYR 615
Query: 677 RADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVD 736
R D L L PQ P+V T ++ P G N +VAV+AY GYD+EDA+I+NK ++D
Sbjct: 616 RFDTLLNLLVYPQKPLVSTKITDIVNFEKLPAGQNGMVAVMAYAGYDIEDALIINKGALD 675
Query: 737 RGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEP 796
RG ++Y++ L N + ++ + S H SDG+ G+ + G+
Sbjct: 676 RGFGRCEVYRSYKHSLKRYSNGMC--------DRISGSKH----SDGVRGPGERVFDGDF 723
Query: 797 YCSIYDKTTNS---WRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDK 853
+ T ++ + K VD V V K + R R P +GDK
Sbjct: 724 FVYKESPTEDADFKFSGELYKNLSPSVVDKVIVARSGEDQFMVKTCL--RQVRQPEVGDK 781
Query: 854 FSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
FSSRHGQKGV + P+ D+PFS G PD+I+NPH FPSRMT+ ++E ++ K
Sbjct: 782 FSSRHGQKGVIGLVVPETDLPFSE-DGQVPDIIMNPHGFPSRMTVGKIIELISGK 835
>gi|324120662|dbj|BAJ78722.1| RNA polymerase II second largest subunit [Protohermes grandis]
Length = 1175
Score = 245 bits (626), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 248/930 (26%), Positives = 403/930 (43%), Gaps = 104/930 (11%)
Query: 34 MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVR---ERFNFGQFPVMLKTRRCHLQGADS 90
M + R ++Y+ L D+ + G + ++ G+ P+ML++ C L G
Sbjct: 109 MPNEARLRNLTYSAPLYVDITKTIVKEGEDPIETQHQKTFIGKIPIMLRSTYCLLSGLTD 168
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
+ L L E + GGYFI+NG E+V +I ++ ++ + +D + Y KA +
Sbjct: 169 RDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFAMKDGKYAY--KAEIRS 223
Query: 151 CVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
C+ + + TL + + G + G+ + +P+ IV +AL D +
Sbjct: 224 CLEHSSRPTSTLWVNMMARGGQAIKKAAIGQRIIAILPYIKQEIPIMIVFRALGFVADRD 283
Query: 201 IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
I H+ +D+ P + E VK L E + + L IG +
Sbjct: 284 ILEHIIYDFDD-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGA--RGARP 328
Query: 261 GLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
G+ E A +++ + H+ ++ K L +M+ +L D+ D
Sbjct: 329 GVTKEKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 388
Query: 317 QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
N+ + L G L+ + ++ L K +L + + GK F+ +LA IK +K
Sbjct: 389 GNKRLDLAGPLLAFLFRGLFKN-LMKEVRLYAQKFIDRGKDFNL-DLA-IK-------TK 438
Query: 377 QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
I + L TG Q Q RAG + RL F +S R ++ G +
Sbjct: 439 MITDGLRYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRINSPIGRDG-KLA 496
Query: 437 SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
R+L WG +CP TP+G GL+ ++ ++ + IL L
Sbjct: 497 KPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYIS-----------VGSQPSPILEFL 545
Query: 497 IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAAS 550
M +L ++ S + ++G VG+ + E+++A LR+L+ VS S
Sbjct: 546 EEWSM-ENLEEIAPSAIADATKIFVNGCWVGI--HRDPEQLMATLRKLRRQMDIIVSEVS 602
Query: 551 VIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN------------I 598
+I D + + G L K + R+I + E N +
Sbjct: 603 MIRDIRDREIRIYTDSGRICRPLLIVENGKLLLKKRHIDMLKEREYNNYGWQVLVASGVV 662
Query: 599 ELIGPFEQ-VFMEIRCPDGGDGGRRNAFPATHE--EIHPTGMLSVVANLTPYSDHNQSPR 655
E I E+ M P+ + A+ TH EIH +L V A++ P+ DHNQSPR
Sbjct: 663 EYIDTLEEETVMIAMSPEDLRHEKEYAYCTTHTHCEIHAAMILGVCASIIPFPDHNQSPR 722
Query: 656 NMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVA 715
N YQ M KQ MG + R D + L P P+V T + E P G N+IVA
Sbjct: 723 NTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVA 782
Query: 716 VLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDD-GNKVDRGQKLFRRN-KDAK 773
+L YTGY+ ED++ILN S+V+RG Y++ S G++ ++ +K R+ + +
Sbjct: 783 ILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDSESKRIGDQEEQFEKPTRQTCQGMR 842
Query: 774 SLH-SVIDSDGL-----------PYVGQMIHPGEPYCSIYDKTTNSWRTNSR---KGSES 818
+ H +D DG+ +G+ I E + T + ++ + SE+
Sbjct: 843 NAHYDKLDDDGIISPGIRVSGDDVVIGKTITLPENEDELEGTTKRFTKRDASTFLRNSET 902
Query: 819 VFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGV 878
VD V + + NS+ + IR R R P IGDKF+SRHGQKG C + DMPF+
Sbjct: 903 GVVDQVMLTL-NSEGY-KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFT-C 959
Query: 879 TGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
G+ PD+IINPHA PSRMTI L+E + K
Sbjct: 960 EGLTPDIIINPHAIPSRMTIGHLIECIQGK 989
>gi|18977936|ref|NP_579293.1| DNA-directed RNA polymerase subunit B [Pyrococcus furiosus DSM
3638]
gi|397652057|ref|YP_006492638.1| DNA-directed RNA polymerase subunit B [Pyrococcus furiosus COM1]
gi|18893706|gb|AAL81688.1| DNA-directed RNA polymerase subunit b [Pyrococcus furiosus DSM
3638]
gi|393189648|gb|AFN04346.1| DNA-directed RNA polymerase subunit B [Pyrococcus furiosus COM1]
Length = 1117
Score = 245 bits (625), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 253/988 (25%), Positives = 422/988 (42%), Gaps = 179/988 (18%)
Query: 15 LVRHHIESFDYMLDEGLSEMFDHCRQAK-------ISYTGKLMADVEFQY---------- 57
LVR H++S++ ++ GL E+ + K + + + + EFQ
Sbjct: 27 LVRQHLDSYNAFIERGLQEVVNEFGGIKPDIPDFEVKFGKIRVGEPEFQEPHGQRKPLYP 86
Query: 58 LDA-------GSPVVRE-------------RFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
+DA +P+ E G+ P+MLK++ C L G ++L+ L
Sbjct: 87 MDARIRNLTYAAPLYLEMIPVIKGVEQDPVEVRIGELPIMLKSKVCRLYGLSDEELIKLG 146
Query: 98 EEAAEMGGYFILNGLERVFRSV--ILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKD 155
E+ + GGYFI+NG ERV S+ I P + ++V +R+E Y K R +
Sbjct: 147 EDPKDPGGYFIINGSERVIVSIEDIAPNR----TLVEKD--ERQEKYIAKVFSYRHGYRA 200
Query: 156 QSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIV--LKALVDTNDLEIFNHLTCCYDEKY 213
+V + +L ++ PV V ++AL D +I
Sbjct: 201 LVAVERRKDGIL--------YVDIPNVPKPVKFVYVMRALGLERDKDIVE---------- 242
Query: 214 KKEKGAVGSPLVSERVKIILAEVQDLS-LTTRLQCLQHIGEHFQPVIDGLQSESYYAVAE 272
AVG+ E +I+ ++D S +TT+ + L+ IG+ P G E AE
Sbjct: 243 -----AVGND--PEVQQIMFDNLEDASDITTQQEALEFIGKLVAP---GQAREYRLKRAE 292
Query: 273 TVIRDYIFVHLN----DNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLI 328
VI + + H+ D K L M K+ L D+ D N+ + L G L+
Sbjct: 293 YVIDNNLLPHMGVSPEDRIKKAYYLGMMALKVIELSLGRRPEDDKDHYANKRLRLAGDLL 352
Query: 329 TIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKT 388
+ ++ + + + G K+ F N+ I SI + T
Sbjct: 353 KDLFRVAFSQLVKDIQYQMTKTYQRKGDKYTFGNIHRF-----------IRNSIRPDVLT 401
Query: 389 GRL--ATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESW 446
R+ A TG R G + +R N++ +S R V + R L W
Sbjct: 402 ERIEHALATGAWPGGRTGVSQLLDRTNYMSTLSHLRRVTSPLDREQPHFEA-RDLHGTHW 460
Query: 447 GFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLP 506
G +CP TP+G CGL+ ++ ++ + IR++ L+ +G++P
Sbjct: 461 GRICPTETPEGPNCGLVKNLALMAQITTAVPEE-EIREY----------LMSLGIVPIE- 508
Query: 507 KLVKSGPPAVLSVLLDGRVVGVIPSSE--IEKVVAHLRRLKVSAASVIP--DDLEVGYVP 562
V+ P + V L+G ++G I + ++++ R K+S + +D++ YV
Sbjct: 509 --VRRPDPTLWRVYLNGVLIGTIEDGKALVQRIRQDRRSGKISDVINVAYYEDVKEVYVN 566
Query: 563 LSLGGAY-PGLYLFTSPPKFVRP-VRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGG 620
G P + + PK + V+ + + ++ +G E + E
Sbjct: 567 SDDGRVRRPLIIVENGVPKLTKEHVQAVKEGRLKWSDLIKMGIIEYLDAE---------E 617
Query: 621 RRNAFPA----------THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFS 670
NA+ A TH E+ P +L + A+L PY +HN +PRN Y MAKQ++G
Sbjct: 618 EENAYVAMWPWEVTEEHTHLELMPAAILGLPASLVPYPEHNAAPRNTYGAGMAKQSLGLG 677
Query: 671 VQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMIL 730
+ R D + + L PQ P+V + G ++ P G N +VAVLAY GY+MEDA+I+
Sbjct: 678 WANFRIRVDTRGHLLHYPQIPLVNSRIMKAVGYEDRPAGQNFVVAVLAYQGYNMEDAIII 737
Query: 731 NKSSVDRGMCHGQIY-------------QTETIDLSDDGNKVDRGQKLFRRNKDAKSLHS 777
NK+S++RG+ + QT+ ++ D + RG+K +R
Sbjct: 738 NKASIERGLARSTFFRTYEAEEKKYLGGQTDKFEIPDPTVRGYRGEKYYRN--------- 788
Query: 778 VIDSDGLPY-----------VGQMIHP------GEPYCSIYDKTTNSWRTNSRKGSESVF 820
+D DGL + VG+ P G S+ ++ S + + SE
Sbjct: 789 -LDEDGLIFPESKVEGKDVLVGRTSPPRFLEERGLGTVSLQERRETS---VAVRPSEKGV 844
Query: 821 VDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTG 880
VD V + + + + + R R P +GDKF+SRHGQKGV + P DMP++ +G
Sbjct: 845 VDKVII--TETGDGTKLVKVTVRDLRIPELGDKFASRHGQKGVIGLIVPQEDMPWTE-SG 901
Query: 881 MRPDLIINPHAFPSRMTIAMLLESVAAK 908
+ PDLI+NPH PSRMT+ L+E++ K
Sbjct: 902 IVPDLIVNPHGIPSRMTVGQLIEAIGGK 929
>gi|324120622|dbj|BAJ78702.1| RNA polymerase II second largest subunit [Karoophasma biedouwense]
Length = 1176
Score = 245 bits (625), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 249/944 (26%), Positives = 408/944 (43%), Gaps = 132/944 (13%)
Query: 34 MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVR---ERFNFGQFPVMLKTRRCHLQGADS 90
M + R ++Y+ L D+ + G + ++ G+ P+ML++ C L G
Sbjct: 109 MPNEARLRNLTYSAPLYVDITKTIVKDGEEPIETQHQKTFIGKIPIMLRSTYCLLSGLTD 168
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
+ L L E + GGYFI+NG E+V +I ++ ++ S +D + Y KA +
Sbjct: 169 RDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFSMKDGKFAY--KAEIRS 223
Query: 151 CVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
C+ + + TL + + G + G+ + +P+ IV +AL D +
Sbjct: 224 CLEHSSRPTSTLWVNMMARGGQSIKKSAIGQRIIAVLPYIKQEIPIMIVFRALGFVADRD 283
Query: 201 IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
I H+ +D+ P + E VK L E + + L IG +
Sbjct: 284 ILEHIIYDFDD-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGA--RGARP 328
Query: 261 GLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
G+ E A +++ + H+ ++ K L +M+ +L D+ D
Sbjct: 329 GVTKEKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 388
Query: 317 QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
N+ + L G L+ + ++ +++ + Q I + GK F+ LA IK +K
Sbjct: 389 GNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFI-DRGKDFN-LELA-IK-------TK 438
Query: 377 QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
I + L TG Q Q RAG + RL F +S R V+ G +
Sbjct: 439 IITDGLRYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRVNSPIGRDG-KLA 496
Query: 437 SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
R+L WG +CP TP+G GL+ ++ ++ + IL L
Sbjct: 497 KPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYIS-----------VGSQPSPILEFL 545
Query: 497 IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAAS 550
M +L ++ S + ++G VG+ + E+++A LR+L+ VS S
Sbjct: 546 EEWSM-ENLEEIAPSAIADATKIFVNGCWVGI--HRDPEQLMATLRKLRRQMDIIVSEVS 602
Query: 551 VIPD--DLEVGYVPLSLGGAYPGLYLFTSPPKFVRPV------------RNISLPSEESQ 596
+I D D E+ ++T + RP+ R+I + E
Sbjct: 603 MIRDIRDREI--------------RIYTDAGRICRPLLIVENGSLLLKKRHIDMLKEREY 648
Query: 597 N------------IELIGPF-EQVFMEIRCPDGGDGGRRNAFPA--THEEIHPTGMLSVV 641
N +E I E+ M P+ + A+ TH EIHP +L V
Sbjct: 649 NNYGWQVLVASGVVEYIDTLEEETVMIAMSPEDLRQEKEYAYCTTYTHCEIHPAMILGVC 708
Query: 642 ANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKY 701
A++ P+ DHNQSPRN YQ M KQ MG + R D + L P P+V T +
Sbjct: 709 ASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYL 768
Query: 702 GIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT-ETIDLSDDGNKVD 760
E P G N+IVA+L YTGY+ ED++I+N S+V+RG +++ + + G++ +
Sbjct: 769 RFRELPAGINSIVAILCYTGYNQEDSVIMNASAVERGFFRSVFFRSYKDAESKRIGDQEE 828
Query: 761 RGQKLFRRNKDA--KSLHSVIDSDGL-----------PYVGQMIHPGEPYCSIYDKTTNS 807
+ +K R+ +L+ +D DG+ +G+ I E + T
Sbjct: 829 QFEKPTRQTCQGMRNALYDKLDDDGIISPGIRVSGDDVVIGKTITLPENDDELEGTTKRF 888
Query: 808 WRTNSR---KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVC 864
+ ++ + SE+ VD V + + NS+ + IR R R P IGDKF+SRHGQKG C
Sbjct: 889 TKRDASTFLRNSETGIVDQVMLTL-NSEGY-KFCKIRVRSVRIPQIGDKFASRHGQKGTC 946
Query: 865 SQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
+ DMPF+ G+ PD+IINPHA PSRMTI L+E + K
Sbjct: 947 GIQYRQEDMPFT-CEGLTPDIIINPHAIPSRMTIGHLIECLQGK 989
>gi|324120626|dbj|BAJ78704.1| RNA polymerase II second largest subunit [Euconocephalus varius]
Length = 1175
Score = 244 bits (624), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 251/944 (26%), Positives = 406/944 (43%), Gaps = 132/944 (13%)
Query: 34 MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVR---ERFNFGQFPVMLKTRRCHLQGADS 90
M + R ++Y+ L D+ G + ++ G+ P+ML++ C L G
Sbjct: 109 MPNEARLRNLTYSAPLYVDITKTIEKEGEEPIETQHQKTFIGKIPIMLRSTYCLLSGLTD 168
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
+ L L E + GGYFI+NG E+V +I ++ ++ S +D + Y KA +
Sbjct: 169 RDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFSMKDGKYAY--KAEIRS 223
Query: 151 CVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
C+ + + TL + + G + G+ + +P+ IV +AL D +
Sbjct: 224 CLEHSSRPTSTLWVNMMARGGQSIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRD 283
Query: 201 IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
I H+ +D+ P + E VK L E + + L IG +
Sbjct: 284 ILEHIIYDFDD-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGS--RGARP 328
Query: 261 GLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
G+ E A +++ + H+ ++ K L +M+ +L D+ D
Sbjct: 329 GVTKEKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 388
Query: 317 QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
N+ + L G L+ +L L L K ++ + + GK F+ LA IK +K
Sbjct: 389 GNKRLDLAGPLLA-FLFRGLFKTLMKEVRMYAQKFIDRGKDFN-LELA-IK-------TK 438
Query: 377 QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
I + L TG Q + RAG + RL F +S R V+ G +
Sbjct: 439 IITDGLRYSLATGNWGDQKKAHM-ARAGVSQVLNRLTFASTLSHLRRVNSPIGRDG-KLA 496
Query: 437 SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
R+L WG +CP TP+G GL+ ++ ++ + IL L
Sbjct: 497 KPRQLHNSLWGMICPAETPEGAAVGLVKNLALMAYIS-----------VGSQPSPILEFL 545
Query: 497 IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAAS 550
M +L ++ S + ++G VG+ + E+++A LR+L+ VS S
Sbjct: 546 EEWSM-ENLEEIAPSAIADATKIFVNGCWVGI--HRDPEQLMATLRKLRRQMDIIVSEVS 602
Query: 551 VIPD--DLEVGYVPLSLGGAYPGLYLFTSPPKFVRPV------------RNISLPSEESQ 596
+I D D E+ ++T + RP+ ++I + E
Sbjct: 603 MIRDIRDREI--------------RIYTDAGRICRPLLIVEGGSLLLKKKHIDMLKEREY 648
Query: 597 N------------IELIGPF-EQVFMEIRCPDGGDGGRRNAFPA--THEEIHPTGMLSVV 641
N +E I E+ M PD + A+ TH EIHP +L V
Sbjct: 649 NNYGWQVLVASGVVEYIDTLEEETVMIAMSPDDLRQDKEYAYCTTYTHCEIHPAMILGVC 708
Query: 642 ANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKY 701
A++ P+ DHNQSPRN YQ M KQ MG + R D + L P P+V T +
Sbjct: 709 ASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYL 768
Query: 702 GIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT-ETIDLSDDGNKVD 760
E P G N+IVA+L YTGY+ ED++ILN S+V+RG +++ + + G++ +
Sbjct: 769 RFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFFRSYKDAESKRIGDQEE 828
Query: 761 RGQKLFRRNKDA--KSLHSVIDSDGL-----------PYVGQMIHPGEPYCSIYDKTTNS 807
+ +K R+ +L+ +D DG+ +G+ I E + T
Sbjct: 829 QFEKPTRQTCQGMRNALYDKLDDDGIISPGIRVSGDDVVIGKTIMLPETEDELEGTTKRF 888
Query: 808 WRTNSR---KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVC 864
+ ++ + SE+ VD V + + NS+ + IR R R P IGDKF+SRHGQKG C
Sbjct: 889 TKRDASTFLRNSETGIVDQVMLTL-NSEGY-KFCKIRVRSVRIPQIGDKFASRHGQKGTC 946
Query: 865 SQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
+ DMPF+ G+ PD+IINPHA PSRMTI L+E + K
Sbjct: 947 GIQYRQEDMPFT-CEGITPDIIINPHAIPSRMTIGHLIECLQGK 989
>gi|324120638|dbj|BAJ78710.1| RNA polymerase II second largest subunit [Tenodera aridifolia]
Length = 1175
Score = 244 bits (623), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 249/944 (26%), Positives = 406/944 (43%), Gaps = 132/944 (13%)
Query: 34 MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVR---ERFNFGQFPVMLKTRRCHLQGADS 90
M + R ++Y+ L D+ + G + ++ G+ P+ML++ C L G
Sbjct: 109 MPNEARLRNLTYSAPLYVDITKTIVKDGEEPIETQHQKTFIGKIPIMLRSTYCLLSGLTD 168
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
+ L L E + GGYFI+NG E+V +I ++ ++ S +D + Y KA +
Sbjct: 169 RDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFSMKDGKFAY--KAEIRS 223
Query: 151 CVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
C+ + + TL + + G + G+ + +P+ IV +AL D +
Sbjct: 224 CLEHSSRPTSTLWVNMMARGGQSIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRD 283
Query: 201 IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
I H+ +D+ P + E VK L E + + L IG +
Sbjct: 284 ILEHIIYDFDD-----------PEMMEMVKPSLDEA--FVIQEQNIALNFIGA--RGARP 328
Query: 261 GLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
G+ E A +++ + H+ ++ K L +M+ +L D+ D
Sbjct: 329 GVTKEKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 388
Query: 317 QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
N+ + L G L+ + ++ +++ + Q I + GK F+ LA IK +K
Sbjct: 389 GNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFI-DKGKDFNL-ELA-IK-------TK 438
Query: 377 QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
I + L TG Q + RAG + RL F +S R V+ G +
Sbjct: 439 IITDGLRYSLATGNWGDQKKAHMA-RAGVSQVLNRLTFASTLSHLRRVNSPIGRDG-KLA 496
Query: 437 SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
R+L WG +CP TP+G GL+ ++ ++ + IL L
Sbjct: 497 KPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYIS-----------VGSQPSPILEFL 545
Query: 497 IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAAS 550
M +L ++ S + ++G VG+ + E+++A LR+L+ VS S
Sbjct: 546 EEWSM-ENLEEIAPSAIADATKIFVNGCWVGI--HRDPEQLMATLRKLRRQMDIIVSEVS 602
Query: 551 VIPD--DLEVGYVPLSLGGAYPGLYLFTSPPKFVRPV------------RNISLPSEESQ 596
+I D D E+ ++T + RP+ R+I + E
Sbjct: 603 MIRDIRDREI--------------RIYTDAGRICRPLLIVEGGSLLLKKRHIDMLKEREY 648
Query: 597 N------------IELIGPFEQ-VFMEIRCPDGGDGGRRNAFPAT--HEEIHPTGMLSVV 641
N +E I E+ M PD + A+ T H EIHP +L V
Sbjct: 649 NNYGWQVLVASGVVEYIDTLEEETVMISMSPDDLRQDKEYAYCTTYTHCEIHPAMILGVC 708
Query: 642 ANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKY 701
A++ P+ DHNQSPRN YQ M KQ MG + R D + L P P+V T +
Sbjct: 709 ASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYL 768
Query: 702 GIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT-ETIDLSDDGNKVD 760
E P G N+IVA+L YTGY+ ED++I+N S+V+RG +++ + + G++ +
Sbjct: 769 RFRELPAGINSIVAILCYTGYNQEDSVIMNASAVERGFFRSVFFRSYKDAESKRIGDQEE 828
Query: 761 RGQKLFRRNKDA--KSLHSVIDSDGLPYVGQMIHPGE----PYCSIYDKTTNSWRTNSR- 813
+ +K R+ +L+ +D DG+ G + + ++ D T R
Sbjct: 829 QFEKPTRQTCQGMRNALYDKLDDDGIISPGIRVSGDDVVIGKTITLPDNEDELEGTTKRF 888
Query: 814 ---------KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVC 864
+ SE+ VD V + + NS+ + IR R R P IGDKF+SRHGQKG C
Sbjct: 889 TKRDASTFLRNSETGIVDQVMLTL-NSEGY-KFCKIRVRSVRIPQIGDKFASRHGQKGTC 946
Query: 865 SQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
+ DMPF+ G+ PD+IINPHA PSRMTI L+E + K
Sbjct: 947 GIQYRQEDMPFT-CEGLTPDIIINPHAIPSRMTIGHLIECLQGK 989
>gi|312079478|ref|XP_003142191.1| DNA-directed RNA polymerase II second largest subunit [Loa loa]
gi|307762647|gb|EFO21881.1| DNA-directed RNA polymerase II subunit RPB2 [Loa loa]
Length = 1171
Score = 244 bits (623), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 245/926 (26%), Positives = 398/926 (42%), Gaps = 102/926 (11%)
Query: 34 MFDHCRQAKISYTGKLMADVEFQYLDAGSP---VVRERFNFGQFPVMLKTRRCHLQGADS 90
M + R ++Y+ L D+ G E+ G+ P+ML++ C L
Sbjct: 111 MPNEARLRNLTYSSPLYIDITKTMTRIGEEPKETKYEKVFVGKIPIMLRSSYCMLANMSD 170
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
+ L L E + GGYF++NG E+V +I ++ ++ S +D + YT K
Sbjct: 171 RDLSELNECPLDPGGYFVINGSEKV---LIAQEKMATNTVYVFSMKDGK--YTYKTECRS 225
Query: 151 CVRKD-QSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
C+ + + TL + L G G + + +PV IV +AL +D +
Sbjct: 226 CLENSSRPTSTLWVNMLPRGGGGSKKSAMGPKIIAILPYIKQEIPVMIVFRALGFVSDHD 285
Query: 201 IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
I H+ +++ P + E VK L E + + L IG +
Sbjct: 286 ILEHIIYDFED-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGA--RGAKP 330
Query: 261 GLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
G+ E A+ +++ + H+ ++ K L +M+ +L D+ D +
Sbjct: 331 GVTKEQRIKYAKEILQKEMLPHVGISDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHM 390
Query: 317 QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
N+ + L G L+ + + L++ + Q I NG DF +K +
Sbjct: 391 GNKRLDLAGPLLAFLFRALFRNLLKEVRLTAQKYINKNG---DFMLDLCVKTPL------ 441
Query: 377 QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
I + L TG Q Q RAG + RL + +S R + G +
Sbjct: 442 -ITRGLAYSLATGNWGDQKKAH-QSRAGVSQVLNRLTYTATLSHLRRCNSPIGREG-KLA 498
Query: 437 SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
R+L WG +CP TP+G+ GL+ ++ Y S G++ + IL L
Sbjct: 499 KPRQLHNTQWGMVCPAETPEGQAVGLVKNLALMA-----YISVGSLPE------PILEFL 547
Query: 497 IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAAS 550
M +L ++ + + ++G VG+ + E+++ L++L+ VS S
Sbjct: 548 EEWSM-ENLEEVAPTAIADATKIFVNGAWVGI--HRDPEQLMTTLKKLRREMDIIVSEVS 604
Query: 551 VIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN---------IELI 601
++ D + + G L K ++I + S +ELI
Sbjct: 605 MVRDIRDREIRIYTDAGRVCRPLLIVENQKLALKRKHIDQLKDNSYTWSELVAGGVVELI 664
Query: 602 GPFEQ--VFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQ 659
E+ V + + D GG + + TH EIHP +L V A++ P+ DHNQSPRN YQ
Sbjct: 665 DAMEEETVMLAMMPEDLKAGGYCDTY--THCEIHPAMILGVCASIIPFPDHNQSPRNTYQ 722
Query: 660 CQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAY 719
M KQ MG R D + L PQ P+V T + +E P G NAIVA+L+Y
Sbjct: 723 SAMGKQAMGVYTTNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFNELPAGINAIVAILSY 782
Query: 720 TGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSV- 778
TGY+ ED++I+N+S +DRG+ Y++ ++ N + + R+K + HS+
Sbjct: 783 TGYNQEDSIIMNQSGIDRGLFRSVFYRSYRDQEANLDNANEELIEKPTRDKCSGMRHSLY 842
Query: 779 --IDSDGLPYVGQMIHPGE----PYCSIYDKTTNSWRTNSR----------KGSESVFVD 822
+D DG+ G + + S+ D + T R + SE+ VD
Sbjct: 843 DKLDEDGIISPGMRVSGDDVIIGKTISLPDTEDDLDATIKRYTKKDASTFLRSSETGIVD 902
Query: 823 YVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMR 882
V + + N + IR R R P IGDKF+SRHGQKG ++ DMPF+ G+
Sbjct: 903 QVMLTLNTDGN--KFVKIRVRSVRLPQIGDKFASRHGQKGTMGMMYRQEDMPFTN-EGIT 959
Query: 883 PDLIINPHAFPSRMTIAMLLESVAAK 908
PD+IINPHA PSRMTI L+E + K
Sbjct: 960 PDIIINPHAVPSRMTIGHLIECLQGK 985
>gi|389583887|dbj|GAB66621.1| DNA-directed RNA polymerase beta subunit [Plasmodium cynomolgi strain
B]
Length = 1566
Score = 244 bits (623), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 136/301 (45%), Positives = 180/301 (59%), Gaps = 27/301 (8%)
Query: 631 EIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQT 690
E+ T LS + +LTP+SDHNQSPRN+YQCQM KQTMG + + K+Y + TPQ
Sbjct: 981 ELKETSFLSFLGSLTPFSDHNQSPRNIYQCQMLKQTMGIQSLNMMYTFSNKVYRMITPQY 1040
Query: 691 PIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETI 750
P+V T Y YG+D +P+GTNA+VA+LAYTGYDMEDA+I+NKSS +RG+ IY+TE I
Sbjct: 1041 PLVVTRDYELYGMDNFPSGTNAVVAILAYTGYDMEDALIINKSSAERGIFRTHIYKTEII 1100
Query: 751 DLSDD--------GNKV-------------DRGQKLFRRNKDAKSLH--SVIDSDGLPYV 787
DL + GN V + N + H +++ DGLP V
Sbjct: 1101 DLEKNHGRGEFILGNNVRYTNSNGGTNTNSTNSNTTGKTNIKLQYEHMGKMLNKDGLPRV 1160
Query: 788 GQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRN 847
Q I P + +K KG +VD V + K+++N Q A +R R TR
Sbjct: 1161 QQKIVELNPLYAYINKANELTVYEKFKGIGEHYVDCVT-NYKSTRN--QIAIVRLRTTRP 1217
Query: 848 PIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAA 907
P++GDKF+SRHGQKGV S+L+P DMPFS +G+ PD+I NPH PSRMTI ML+ES+
Sbjct: 1218 PLVGDKFASRHGQKGVVSRLFPQEDMPFSE-SGIVPDVIFNPHGIPSRMTIGMLIESICG 1276
Query: 908 K 908
K
Sbjct: 1277 K 1277
Score = 113 bits (282), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 74/234 (31%), Positives = 119/234 (50%), Gaps = 25/234 (10%)
Query: 385 MLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPE 444
KTG +A++ + QQ++G+ + A+ +N LRF++ FRA+HRG F ++ S RKLL E
Sbjct: 573 FFKTGNIASEN-IGYQQKSGWVIGADEINSLRFVTNFRAIHRGCFFQEIKVLSPRKLLGE 631
Query: 445 SWGFLCPVHTPDGEPCGLLNHMTSTCRV---ASYYDSRGNIRDFSKMRTSILRVLIGVGM 501
+WGF+CPVHTPDG PCGLLNH++ V AS + NI+ + K IGV +
Sbjct: 632 AWGFICPVHTPDGSPCGLLNHLSQFSYVHCSASNESHKLNIKLYLKK--------IGVNV 683
Query: 502 -IPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEV-G 559
+ + + +++D + I + +VV L+ K + E+
Sbjct: 684 NLDDTSGISTIYEDQTIPIVVDSVPITYISEQDFNRVVFKLKYAKNHNLYNLKAYFEINA 743
Query: 560 YV--PLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEI 611
Y+ PL + + + T P + +RPV N+ + IE I P Q ++ I
Sbjct: 744 YMNEPLLMN----SIIINTFPGRLIRPVFNLKMKC-----IEFISPSYQPYVAI 788
Score = 45.4 bits (106), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 64/324 (19%), Positives = 127/324 (39%), Gaps = 56/324 (17%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
C+ + +Y G++ + + D ++ + G PVM+ + C+L + + L
Sbjct: 163 CKISTRTYEGEITLKINKKTNDE---IISTTVSAGHIPVMVLSNLCNLSSLNKKMLPQKG 219
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
E+ + +GG+F+++G +V R VI PK N + + V + C+ D S
Sbjct: 220 EDESLLGGFFVISGNLKVIRYVIHPKYNTILLN------------EENKVHMNCLLNDNS 267
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYL-----LPVGIVLKALVDTNDLEIFNHLTCCYDEK 212
+Y + F+ G Y +P+ ++L L
Sbjct: 268 -----VYVNFLTCPKFDFFTYGARYQNSVMSVPLHVILLLLSPIKKKSYL---------- 312
Query: 213 YKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQ--------CLQHIGE--HFQPVIDGL 262
+ K K + + VK I +Q + + L L+++G +F+ +
Sbjct: 313 FNKMKMGIKN---ENAVKYIEQYIQSIFIKNELNEKEVFEKYNLKYLGNSSYFRSGVFRY 369
Query: 263 QSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKL----FSLVDHTSVSDNPDSLQN 318
S + +++ I H+ ++KF + M + L F LV N DSL+N
Sbjct: 370 TLYSDEKKGKKILKYVILPHIQSYSEKFETICMMFRTLIFSKFKLVARI----NKDSLEN 425
Query: 319 QEILLPGHLITIYLKEKLEDWLRK 342
+ HL++ LK+++ L +
Sbjct: 426 HAVTTCSHLLSNLLKDQILTCLSR 449
>gi|389852853|ref|YP_006355087.1| DNA-directed RNA polymerase subunit B [Pyrococcus sp. ST04]
gi|388250159|gb|AFK23012.1| DNA-directed RNA polymerase subunit B [Pyrococcus sp. ST04]
Length = 1117
Score = 244 bits (623), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 255/995 (25%), Positives = 420/995 (42%), Gaps = 193/995 (19%)
Query: 15 LVRHHIESFDYMLDEGLSEMFDHCRQAK-------ISYTGKLMADVEFQ----------- 56
LVR H++S++ ++ GL E+ + K + + + EFQ
Sbjct: 27 LVRQHLDSYNAFIERGLQEVVNEFGGIKPDIPDFEVKFGKIRVGQPEFQEPHGQRKPLYP 86
Query: 57 --------------YLDAGSPVVRE------RFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
YL+ PV+R G+ P+MLK++ C L G ++L+ L
Sbjct: 87 MDARIRNLTYSAPLYLEM-IPVIRGIEQEPVEVRIGELPIMLKSKVCRLYGLSDEELIKL 145
Query: 97 KEEAAEMGGYFILNGLERVFRSV--ILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRK 154
E+ + GGYFI+NG ERV S+ I P + ++V +R+E Y K R +
Sbjct: 146 GEDPKDPGGYFIINGSERVIVSIEDIAPNR----TLVEKD--ERQERYVAKVFSYRHGYR 199
Query: 155 DQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGI-----------VLKALVDTNDLEIFN 203
+V K K+ +L VGI V++AL D +I +
Sbjct: 200 ALVTVERK-----------------KDGILYVGIPNVPKPIKFVYVMRALGLERDRDIVD 242
Query: 204 HLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLS-LTTRLQCLQHIGEHFQPVIDGL 262
AVG+ E +I+ ++D S +TT+ + L++IG+ P G
Sbjct: 243 ---------------AVGND--PEVQQILFDNLEDASDITTQQEALEYIGKLVAP---GQ 282
Query: 263 QSESYYAVAETVIRDYIFVHLNDNND----KFNLLIFMLQKLFSLVDHTSVSDNPDSLQN 318
E AE VI + + H+ N + K L M K+ L D+ D N
Sbjct: 283 AREYRLKRAEYVIDNNLLPHMGVNPEDRIRKAYYLGMMALKVIELSLGRRDEDDKDHYAN 342
Query: 319 QEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQI 378
+ + L G L+ + ++ + + + G+K+ F N+ I
Sbjct: 343 KRLRLAGDLLKDLFRVAFGQLVKDIQYQMTKTYQRKGEKYTFGNIHRF-----------I 391
Query: 379 GTSIETMLKTGRL--ATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
SI + T R+ A TG R G + +R N++ +S R V
Sbjct: 392 RNSIRPDVLTERIEHALATGAWPGGRTGVSQLLDRTNYVSTLSHLRRVTSPLDREQPHFE 451
Query: 437 SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
+ R L WG +CP TP+G CGL+ ++ ++ + + + L
Sbjct: 452 A-RDLHGTHWGRICPTETPEGPNCGLVKNLALMSQITT-----------AVPEEEVKEYL 499
Query: 497 IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEI--EKVVAHLRRLKVSAASVIP- 553
+ +G++P V+ P + V L+G ++G I + +++ R K+S +
Sbjct: 500 MSLGIVPIE---VRRPSPELWRVYLNGVLIGTIEDGKALAQRIRQDRRNGKISDVINVAY 556
Query: 554 -DDLEVGYVPLSLGGAY-PGLYLFTSPPKFVRP-VRNISLPSEESQNIELIGPFEQVFME 610
+D++ YV G P + + PK + V+ + + ++ +G E + E
Sbjct: 557 YEDVKEVYVNSDDGRVRRPLIIVENGKPKLTKEHVQAVKEGRLKWSDLIRMGVIEYLDAE 616
Query: 611 IRCPDGGDGGRRNAFPA----------THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQC 660
NA+ A TH E+ P +L + A+L PY +HN +PRN Y
Sbjct: 617 ---------EEENAYVAMWPWEVTEEHTHLELMPAAILGLPASLVPYPEHNAAPRNTYGA 667
Query: 661 QMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYT 720
MAKQ++G + R D + + L PQ P+V + G ++ P G N IVAVLAY
Sbjct: 668 GMAKQSLGLGWANFRIRVDTRGHLLHYPQVPLVDSRIMKAVGYEDRPAGQNFIVAVLAYQ 727
Query: 721 GYDMEDAMILNKSSVDRGMCHGQIYQT-ETIDLSDDGNKVD------------RGQKLFR 767
GY+MEDA+I+NK+S++RG+ ++T E + G + D RG+K +R
Sbjct: 728 GYNMEDAIIINKASIERGLARSTFFRTYEAEEKKYLGGQTDKFEIPAPTVRGYRGEKYYR 787
Query: 768 RNKDAKSLHSVIDSDGLPYVGQ-------MIHPGEPYCSIYDKTTNSWRTNSRKG----- 815
+D DGL + +I P + ++ S R+
Sbjct: 788 N----------LDEDGLIFPESRVEGKDVLIGRTSPPRFLEERGLGSVALQERRETSVAV 837
Query: 816 --SESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDM 873
SE VD V + + + + + R R P +GDKF+SRHGQKGV + P DM
Sbjct: 838 RPSEKGVVDKVII--TETGDGTKLVKVTVRDLRIPELGDKFASRHGQKGVIGLIVPQEDM 895
Query: 874 PFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
P++ +G+ PDLI+NPH PSRMT+ L+E++ K
Sbjct: 896 PWTE-SGIVPDLIVNPHGIPSRMTVGQLIEAIGGK 929
>gi|57530101|ref|NP_001006448.1| DNA-directed RNA polymerase II subunit RPB2 [Gallus gallus]
gi|53127025|emb|CAG31004.1| hypothetical protein RCJMB04_1i14 [Gallus gallus]
Length = 1174
Score = 244 bits (623), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 246/929 (26%), Positives = 400/929 (43%), Gaps = 103/929 (11%)
Query: 34 MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFN---FGQFPVMLKTRRCHLQGADS 90
M + R ++Y+ L D+ + G ++ + G+ P+ML++ C L G
Sbjct: 109 MPNEARLRNLTYSAPLYVDITKTVIKEGEDQLQTQHQKTFIGKIPIMLRSTYCLLNGLTD 168
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
+ L L E + GGYFI+NG E+V +I ++ ++ + +D + YT +
Sbjct: 169 RDLCELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFAKKDSKYAYTGECR--S 223
Query: 151 CVRKD-QSSVTLKLYYLLNGSV---------RLGFWLQGKEYLLPVGIVLKALVDTNDLE 200
C+ + + T+ + L G R+ L + +P+ IV +AL +D +
Sbjct: 224 CLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRD 283
Query: 201 IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
I H+ +++ P + E VK L E + + L IG +
Sbjct: 284 ILEHIIYDFED-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGS--RGAKP 328
Query: 261 GLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
G+ E A+ V++ + H+ ++ K L +M+ +L D+ D
Sbjct: 329 GVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 388
Query: 317 QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
N+ + L G L+ + ++ L++ + Q I + GK F+ LA IK ++
Sbjct: 389 GNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFI-DRGKDFNL-ELA-IK-------TR 438
Query: 377 QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
I ++ L TG Q Q RAG + RL F +S R ++ G +
Sbjct: 439 IISDGLKYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRLNSPIGRDG-KLA 496
Query: 437 SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
R+L WG +CP TP+G GL+ ++ ++ + IL L
Sbjct: 497 KPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYIS-----------VGSQPSPILEFL 545
Query: 497 IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAAS 550
M +L ++ + + ++G VG+ + E+++ LR+L+ VS S
Sbjct: 546 EEWSM-ENLEEISPAAIADATKIFVNGCWVGI--HKDPEQLMNTLRKLRRQMDIIVSEVS 602
Query: 551 VIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN------------I 598
+I D E + G L K + R+I E N +
Sbjct: 603 MIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVV 662
Query: 599 ELIGPFEQ--VFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRN 656
E I E+ V + + D + G TH EIHP+ +L V A++ P+ DHNQSPRN
Sbjct: 663 EYIDTLEEETVMLAMTPDDLQEKGVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRN 722
Query: 657 MYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAV 716
YQ M KQ MG + R D + L PQ P+V T + E P G N+IVA+
Sbjct: 723 TYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAI 782
Query: 717 LAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDG-NKVDRGQKLFRRNKDA--K 773
+YTGY+ ED++I+N+S+VDRG Y++ S G ++ + +K R
Sbjct: 783 ASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGYDQEEVFEKPTRETCQGMRH 842
Query: 774 SLHSVIDSDGLPYVGQMIHPGE----PYCSIYDKTTNSWRTNSR----------KGSESV 819
+++ +D DGL G + + ++ + TN R + SE+
Sbjct: 843 AIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRFTKRDCSTFLRTSETG 902
Query: 820 FVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVT 879
VD V V + + IR R R P IGDKF+SRHGQKG C + DMPF+
Sbjct: 903 IVDQVMVTLNQEGY--KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFT-CE 959
Query: 880 GMRPDLIINPHAFPSRMTIAMLLESVAAK 908
G+ PD+IINPHA PSRMTI L+E + K
Sbjct: 960 GITPDIIINPHAIPSRMTIGHLIECLQGK 988
>gi|324120666|dbj|BAJ78724.1| RNA polymerase II second largest subunit [Chrysoperla nipponensis]
Length = 1175
Score = 244 bits (623), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 249/931 (26%), Positives = 406/931 (43%), Gaps = 106/931 (11%)
Query: 34 MFDHCRQAKISYTGKLMADVEFQYLDAGS-PVV--RERFNFGQFPVMLKTRRCHLQGADS 90
M + R ++Y+ L D+ + G P+V ++ G+ P+ML++ C L
Sbjct: 109 MPNEARLRNLTYSAPLYVDITKTIVKEGEEPIVTQHQKTFIGKIPIMLRSSFCLLSKLTD 168
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
+ L L E + GGYFI+NG E+V +I ++ ++ S +D + Y K+ +
Sbjct: 169 RDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFSMKDGK--YAFKSEIRS 223
Query: 151 CVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
C+ + + TL + + G + G+ + +P+ IV +AL D +
Sbjct: 224 CLEHSSRPTSTLWVNMMARGGQSIKKAAIGQRIIAILPYIKQEIPIMIVFRALGFVADRD 283
Query: 201 IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
I H+ +D+ P + E VK L E + + L IG +
Sbjct: 284 ILEHIIYDFDD-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGA--RGARP 328
Query: 261 GLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
G+ E A +++ + H+ ++ K L +M+ +L D+ D
Sbjct: 329 GVTKEKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 388
Query: 317 QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
N+ + L G L+ + ++ +++ + Q I + GK F+ +LA IK +K
Sbjct: 389 GNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFI-DRGKDFNL-DLA-IK-------TK 438
Query: 377 QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
I + L TG Q Q RAG + RL F +S R V+ G +
Sbjct: 439 MITDGLRYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRVNSPIGRDG-KLA 496
Query: 437 SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
R+L WG +CP TP+G GL+ ++ ++ + IL L
Sbjct: 497 KPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYIS-----------VGSQPSPILEFL 545
Query: 497 IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAAS 550
M +L ++ S + ++G VG+ + E+++A LR+L+ VS S
Sbjct: 546 EEWSM-ENLEEIAPSAIADATKIFVNGCWVGI--HRDPEQLMATLRKLRRQMDIIVSEVS 602
Query: 551 VIPD--DLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN----------- 597
+I D D E+ + G L + + ++ L E N
Sbjct: 603 MIRDIRDREI-RIYTDAGRISRPLIIVENGSLLLKKSHIDMLKDREYNNYGWQGLVGSGV 661
Query: 598 IELIGPFEQ-VFMEIRCPDGGDGGRRNAFPAT--HEEIHPTGMLSVVANLTPYSDHNQSP 654
+E I E+ M PD + A+ +T H EIHP +L + A++ P+ DHNQSP
Sbjct: 662 VEYIDTLEEETTMIAISPDDLRNSKEYAYCSTYTHCEIHPAMILGICASIIPFPDHNQSP 721
Query: 655 RNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIV 714
RN YQ M KQ MG + R D + L P P+V T + E P G N+IV
Sbjct: 722 RNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIV 781
Query: 715 AVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDD-GNKVDRGQKLFRRNKDA- 772
A+L YTGY+ ED++ILN S+V+RG Y++ S G + ++ +K R+
Sbjct: 782 AILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDSESKRIGEQEEQFEKPTRQTCSGM 841
Query: 773 -KSLHSVIDSDGL-----------PYVGQMIHPGEPYCSIYDKTTNSWRTNSR---KGSE 817
+L+ +D DG+ +G+ + E + T + ++ + SE
Sbjct: 842 RHALYDKLDDDGIISPGVRVSGDDVVIGKTMTLPENEDELEGTTKRYTKRDASTFLRNSE 901
Query: 818 SVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSG 877
+ VD V + + NS+ + IR R R P IGDKF+SRHGQKG C + DMPF+
Sbjct: 902 TGVVDQVMLTL-NSEGY-KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFT- 958
Query: 878 VTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
G+ PD+IINPHA PSRMTI L+E + K
Sbjct: 959 CEGLTPDIIINPHAIPSRMTIGHLIECIQGK 989
>gi|126331583|ref|XP_001362455.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Monodelphis
domestica]
gi|395542735|ref|XP_003773281.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Sarcophilus
harrisii]
Length = 1174
Score = 244 bits (623), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 245/931 (26%), Positives = 400/931 (42%), Gaps = 107/931 (11%)
Query: 34 MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFN---FGQFPVMLKTRRCHLQGADS 90
M + R ++Y+ L D+ + G ++ + G+ P+ML++ C L G
Sbjct: 109 MPNEARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTD 168
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
+ L L E + GGYFI+NG E+V +I ++ ++ + +D + YT +
Sbjct: 169 RDLCELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFAKKDSKYAYTGECR--S 223
Query: 151 CVRKD-QSSVTLKLYYLLNGSV---------RLGFWLQGKEYLLPVGIVLKALVDTNDLE 200
C+ + + T+ + L G R+ L + +P+ IV +AL +D +
Sbjct: 224 CLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRD 283
Query: 201 IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
I H+ +++ P + E VK L E + + L IG +
Sbjct: 284 ILEHIIYDFED-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGS--RGAKP 328
Query: 261 GLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
G+ E A+ V++ + H+ ++ K L +M+ +L D+ D
Sbjct: 329 GVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 388
Query: 317 QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
N+ + L G L+ + ++ L++ + Q I + GK F+ LA IK ++
Sbjct: 389 GNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFI-DRGKDFNL-ELA-IK-------TR 438
Query: 377 QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
I ++ L TG Q Q RAG + RL F +S R ++ G +
Sbjct: 439 IISDGLKYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRLNSPIGRDG-KLA 496
Query: 437 SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
R+L WG +CP TP+G GL+ ++ ++ + IL L
Sbjct: 497 KPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYIS-----------VGSQPSPILEFL 545
Query: 497 IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAAS 550
M +L ++ + + ++G VG+ + E+++ LR+L+ VS S
Sbjct: 546 EEWSM-ENLEEISPAAIADATKIFVNGCWVGI--HKDPEQLMNTLRKLRRQMDIIVSEVS 602
Query: 551 VIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN------------I 598
+I D E + G L K + R+I E N +
Sbjct: 603 MIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVV 662
Query: 599 ELIGPFEQ--VFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRN 656
E I E+ V + + D + G TH EIHP+ +L V A++ P+ DHNQSPRN
Sbjct: 663 EYIDTLEEETVMLAMTPDDLQEKGVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRN 722
Query: 657 MYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAV 716
YQ M KQ MG + R D + L PQ P+V T + E P G N+IVA+
Sbjct: 723 TYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAI 782
Query: 717 LAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDA---- 772
+YTGY+ ED++I+N+S+VDRG Y++ S G D+ + + ++
Sbjct: 783 ASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKG--FDQEEVFEKPTRETCQGM 840
Query: 773 -KSLHSVIDSDGLPYVGQMIHPGE----PYCSIYDKTTNSWRTNSR----------KGSE 817
+++ +D DGL G + + ++ + TN R + SE
Sbjct: 841 RHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRYTKRDCSTFLRTSE 900
Query: 818 SVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSG 877
+ VD V V + + IR R R P IGDKF+SRHGQKG C + DMPF+
Sbjct: 901 TGIVDQVMVTLNQEGY--KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFT- 957
Query: 878 VTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
G+ PD+IINPHA PSRMTI L+E + K
Sbjct: 958 CEGITPDIIINPHAIPSRMTIGHLIECLQGK 988
>gi|324120612|dbj|BAJ78697.1| RNA polymerase II second largest subunit [Ephemera japonica]
Length = 1179
Score = 244 bits (622), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 250/940 (26%), Positives = 409/940 (43%), Gaps = 124/940 (13%)
Query: 34 MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVR---ERFNFGQFPVMLKTRRCHLQGADS 90
M + R ++Y+ L D+ + G V ++ G+ P+ML++ C L G
Sbjct: 113 MPNEARLRNLTYSAPLYVDITKLVVKDGENTVETQHQKTFIGKIPIMLRSTYCLLSGLSD 172
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
+ L L E + GGYFI+NG E+V +I ++ ++ + +D + Y + IR
Sbjct: 173 RDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFAMKDGKFAYKAE---IR 226
Query: 151 CVRKDQSSVTLKLYYLLNGSVRLGFWLQ----GKEYL---------LPVGIVLKALVDTN 197
++ S T L+ +N R G ++ G+ + +P+ IV +AL
Sbjct: 227 SCQEHSSRPTSTLW--VNMMARSGQSIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVA 284
Query: 198 DLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQP 257
D +I H+ +D+ P + E VK L E + + L IG +
Sbjct: 285 DRDILEHIIYDFDD-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGA--RG 329
Query: 258 VIDGLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNP 313
G+ E A +++ + H+ ++ K L +M+ +L D+
Sbjct: 330 ARPGVTKEKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALSRRELDDR 389
Query: 314 DSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKN 373
D N+ + L G L+ + ++ +++ + Q I + GK F+ LA IK
Sbjct: 390 DHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFI-DRGKDFNL-ELA-IK------ 440
Query: 374 PSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGL 433
+K I + L TG Q Q RAG + RL F +S R V+ G
Sbjct: 441 -TKIITDGLRYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRVNSPIGRDG- 497
Query: 434 RTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSIL 493
+ R+L WG +CP TP+G GL+ ++ ++ + IL
Sbjct: 498 KLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYIS-----------VGSQPSPIL 546
Query: 494 RVLIGVGMIPSLPKLVKSGPPAVL---SVLLDGRVVGVIPSSEIEKVVAHLRRLK----- 545
L S+ L + P A+L + ++G VG+ + E++++ LR+L+
Sbjct: 547 EFLEEW----SMENLEEIAPSAILDATKIFVNGCWVGI--HRDPEQLMSTLRKLRRQMDI 600
Query: 546 -VSAASVIPD--DLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN----- 597
VS S+I D D E+ + G L + + ++ V L + N
Sbjct: 601 IVSEVSMIRDIRDREI-RIYTDAGRICRPLLIVENGSLLLKKVHIDMLKDRDYNNYGWQF 659
Query: 598 ------IELIGPFEQ-VFMEIRCPDGGDGGRRNAFPAT--HEEIHPTGMLSVVANLTPYS 648
+E I E+ M PD + + A+ T H EIHP +L V A++ P+
Sbjct: 660 LVSSGVVEYIDTLEEETVMIAMSPDDLNHEKEYAYCTTYTHCEIHPAMILGVCASIIPFP 719
Query: 649 DHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPT 708
DHNQSPRN YQ M KQ MG + R D + L PQ P+V T + E P
Sbjct: 720 DHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPA 779
Query: 709 GTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRR 768
G N++VA+ YTGY+ ED++I+N S+V+RG Y++ + K+ ++ F +
Sbjct: 780 GINSVVAIACYTGYNQEDSVIMNASAVERGFFRSIFYRSYK---DQESKKIGDQEEQFEK 836
Query: 769 NKDA------KSLHSVIDSDGL-----------PYVGQMIHPGEPYCSIYDKTTNSWRTN 811
A +++ +D DG+ +G+ I E + T + +
Sbjct: 837 PNRATCQGMRNAIYDKLDDDGIIAPGVRVSGDDVIIGKTITLPENDDELEGSTKKYVKRD 896
Query: 812 SR---KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLW 868
+ + SE+ VD V + + NS+ + + IR R R P IGDKF+SRHGQKG C +
Sbjct: 897 ASTFLRNSETGIVDQVMITL-NSEGY-KFSKIRVRSVRIPQIGDKFASRHGQKGTCGIQY 954
Query: 869 PDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
DMPF+ G+ PD+IINPHA PSRMTI L+E + K
Sbjct: 955 RQEDMPFT-CEGITPDIIINPHAIPSRMTIGHLIECLQGK 993
>gi|242009479|ref|XP_002425513.1| DNA-directed RNA polymerase II 135 kDa polypeptide, putative
[Pediculus humanus corporis]
gi|212509368|gb|EEB12775.1| DNA-directed RNA polymerase II 135 kDa polypeptide, putative
[Pediculus humanus corporis]
Length = 1175
Score = 244 bits (622), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 246/930 (26%), Positives = 404/930 (43%), Gaps = 104/930 (11%)
Query: 34 MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFN---FGQFPVMLKTRRCHLQGADS 90
M + R ++Y+ L D+ + + G + + G+ P+ML++ C L G
Sbjct: 109 MPNEARLRNLTYSAPLYVDITKKIIKEGEDPIETKHQKSFIGKIPIMLRSTYCLLSGLTD 168
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
+ L L E + GGYFI+NG E+V +I ++ ++ S +D + Y KA +
Sbjct: 169 RDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFSMKDGKFAY--KAEIRS 223
Query: 151 CVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
C+ + + TL + + G + G+ + +P+ IV +AL D +
Sbjct: 224 CLEHSSRPTSTLWVNMMARGGQSIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRD 283
Query: 201 IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
I H+ +D+ P + E VK L E + + L IG +
Sbjct: 284 ILEHIIYDFDD-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGA--RGARP 328
Query: 261 GLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
G+ E A+ +++ + H+ ++ K L +M+ +L D+ D
Sbjct: 329 GVTKERRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 388
Query: 317 QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
N+ + L G L+ + ++ +++ + Q I + GK F+ LA IK +K
Sbjct: 389 GNKRLDLAGPLLAFLFRGLFKNLMKEVRMFAQKFI-DRGKDFN-LELA-IK-------TK 438
Query: 377 QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
I + L TG Q Q RAG + RL F +S R V+ G +
Sbjct: 439 IITDGLRYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRVNSPIGRDG-KLA 496
Query: 437 SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
R+L WG +CP TP+G GL+ ++ ++ + IL L
Sbjct: 497 KPRQLHNTLWGMICPAETPEGAAVGLVKNIALMAYIS-----------VGSQPSPILEFL 545
Query: 497 IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAAS 550
M +L ++ S + ++G VG+ + E+++A LR+L+ VS S
Sbjct: 546 EEWSM-ENLEEIAPSAIADATKIFVNGCWVGI--HRDPEQLMATLRKLRRQMDIIVSEVS 602
Query: 551 VIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN------------I 598
+I D + + G L + + ++++ E N +
Sbjct: 603 MIRDIRDREIRIYTDAGRICRPLLIVEGGQLLLKKNHVNMLKEREYNNFGWQVLVASGVV 662
Query: 599 ELIGPF-EQVFMEIRCPDGGDGGRRNAFPA--THEEIHPTGMLSVVANLTPYSDHNQSPR 655
E I E+ M PD + A+ TH EIHP +L V A++ P+ DHNQSPR
Sbjct: 663 EYIDTLEEETVMIAMSPDDLRQDKEYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPR 722
Query: 656 NMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVA 715
N YQ M KQ MG + R D + L P P+V T + E P G N+IVA
Sbjct: 723 NTYQSAMGKQAMGVYITNYHVRMDTLAHVLFYPHKPLVITRSMEYLRFRELPAGINSIVA 782
Query: 716 VLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDD-GNKVDRGQKLFRRNKDA-- 772
+L YTGY+ ED++ILN S+V+RG Y++ S G++ ++ +K R+
Sbjct: 783 ILCYTGYNQEDSVILNASAVERGYFRSVFYRSYKDSESKRIGDQEEQFEKPNRQTCQGMR 842
Query: 773 KSLHSVIDSDGL-----------PYVGQMIHPGEPYCSIYDKTTNSWRTNSR---KGSES 818
+++ +D DG+ +G+ I + + T + ++ + SE+
Sbjct: 843 NAMYDKLDDDGIIAPGVRVSGDDVIIGKTITLPDNDDELEGATKRYTKRDASTFLRNSET 902
Query: 819 VFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGV 878
VD V + + NS+ + IR R R P IGDKF+SRHGQKG C + DMPF+
Sbjct: 903 GCVDQVMITL-NSEGY-KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFT-C 959
Query: 879 TGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
G+ PD+IINPHA PSRMTI L+E + K
Sbjct: 960 EGLTPDIIINPHAIPSRMTIGHLIECLQGK 989
>gi|224049409|ref|XP_002192218.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Taeniopygia
guttata]
Length = 1174
Score = 244 bits (622), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 246/929 (26%), Positives = 401/929 (43%), Gaps = 103/929 (11%)
Query: 34 MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVR---ERFNFGQFPVMLKTRRCHLQGADS 90
M + R ++Y+ L D+ + G ++ ++ G+ P+ML++ C L G
Sbjct: 109 MPNEARLRNLTYSAPLYVDITKTVIKEGEDQLQTQHQKTFIGKIPIMLRSTYCLLNGLTD 168
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
+ L L E + GGYFI+NG E+V +I ++ ++ + +D + YT +
Sbjct: 169 RDLCELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFAKKDSKYAYTGECR--S 223
Query: 151 CVRKD-QSSVTLKLYYLLNGSV---------RLGFWLQGKEYLLPVGIVLKALVDTNDLE 200
C+ + + T+ + L G R+ L + +P+ IV +AL +D +
Sbjct: 224 CLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRD 283
Query: 201 IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
I H+ +++ P + E VK L E + + L IG +
Sbjct: 284 ILEHIIYDFED-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGS--RGAKP 328
Query: 261 GLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
G+ E A+ V++ + H+ ++ K L +M+ +L D+ D
Sbjct: 329 GVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 388
Query: 317 QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
N+ + L G L+ + ++ L++ + Q I + GK F+ LA IK ++
Sbjct: 389 GNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFI-DRGKDFNL-ELA-IK-------TR 438
Query: 377 QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
I ++ L TG Q Q RAG + RL F +S R ++ G +
Sbjct: 439 IISDGLKYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRLNSPIGRDG-KLA 496
Query: 437 SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
R+L WG +CP TP+G GL+ ++ ++ + IL L
Sbjct: 497 KPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYIS-----------VGSQPSPILEFL 545
Query: 497 IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAAS 550
M +L ++ + + ++G VG+ + E+++ LR+L+ VS S
Sbjct: 546 EEWSM-ENLEEISPAAIADATKIFVNGCWVGI--HKDPEQLMNTLRKLRRQMDIIVSEVS 602
Query: 551 VIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN------------I 598
+I D E + G L K + R+I E N +
Sbjct: 603 MIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVV 662
Query: 599 ELIGPFEQ--VFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRN 656
E I E+ V + + D + G TH EIHP+ +L V A++ P+ DHNQSPRN
Sbjct: 663 EYIDTLEEETVMLAMTPDDLQEKGVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRN 722
Query: 657 MYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAV 716
YQ M KQ MG + R D + L PQ P+V T + E P G N+IVA+
Sbjct: 723 TYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAI 782
Query: 717 LAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDG-NKVDRGQKLFRRNKDA--K 773
+YTGY+ ED++I+N+S+VDRG Y++ S G ++ + +K R
Sbjct: 783 ASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGYDQEEVFEKPTRETCQGMRH 842
Query: 774 SLHSVIDSDGLPYVGQMIHPGE----PYCSIYDKTTNSWRTNSR----------KGSESV 819
+++ +D DGL G + + ++ + TN R + SE+
Sbjct: 843 AIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRFTKRDCSTFLRTSETG 902
Query: 820 FVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVT 879
VD V V + + IR R R P IGDKF+SRHGQKG C + DMPF+
Sbjct: 903 IVDQVMVTLNQEGY--KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFT-CE 959
Query: 880 GMRPDLIINPHAFPSRMTIAMLLESVAAK 908
G+ PD+IINPHA PSRMTI L+E + K
Sbjct: 960 GITPDIIINPHAIPSRMTIGHLIECLQGK 988
>gi|156087649|ref|XP_001611231.1| DNA-directed RNA polymerase, beta subunit [Babesia bovis T2Bo]
gi|154798485|gb|EDO07663.1| DNA-directed RNA polymerase, beta subunit, putative [Babesia bovis]
Length = 1171
Score = 244 bits (622), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 248/923 (26%), Positives = 407/923 (44%), Gaps = 104/923 (11%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGA-------DS 90
CR I+Y+ + DVE+ G V +R G+ PVML++ C L G D+
Sbjct: 117 CRMRDITYSAPMYVDVEYY---NGEGVASKRVEIGRLPVMLRSCVCALSGGMRANGNVDN 173
Query: 91 QKLVS-LKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVI 149
+L S L E + GGYFI+ G+E+V +++ +Q ++ + D ++
Sbjct: 174 FELSSRLGECPYDPGGYFIIKGVEKV---ILMQEQLSKCRVIVET--DVKKNICATVTSA 228
Query: 150 RCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY 209
K +++V K L VR + +P+ I+LKA+ T D EI +
Sbjct: 229 TAESKSRTAVVYKNQKLY---VRHNSFTDD----VPLCIILKAMGVTTDEEIAQLIGTAG 281
Query: 210 DEKYKKEKGAVGSPLVSERVKIILAEVQDL---SLTTRLQCLQHIGEHFQP--VIDGLQS 264
+Y G + ++DL + TR+ L ++G +P + G +
Sbjct: 282 AREYLPTGGDY------------ILSIEDLYNEGINTRMDALLYVGRKVRPRPLAKGFFT 329
Query: 265 ESYYAVAET----------VIRDYIFVHL-----NDNNDKFNLLIFMLQKLFSLVDHTSV 309
S + +T ++ + H+ D + K L M +++ S+
Sbjct: 330 SSKERLPKTNQNLIEDTHDILTRVLLSHIPMRNCRDFSGKIKSLCLMARRVLSVASGKEP 389
Query: 310 SDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQD------EIENNGKKFDFFNL 363
D+ D N+ + L G LI+I ++ + +L + KK I EI +N +
Sbjct: 390 MDDKDHYGNKRLELAGQLISILFEDLFKAFLGQLKKQIDATLTRHYEIVSNCHGGE---Q 446
Query: 364 ANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRA 423
A + P+ I ++ + TG + +R+G + RL+++ +
Sbjct: 447 AKYPDCLVSLPTDIITRGMQATISTGNWNIKRFR--IERSGVSQILSRLSYISCLGMMTK 504
Query: 424 VHRGASF-AGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNI 482
+ + F G + + R L P G +CP TP+GE CGL+ +++ + ++ + G+I
Sbjct: 505 TN--SQFEKGRKVSKPRALQPSQLGLICPCDTPEGESCGLVKNLS----LMNHVTTDGDI 558
Query: 483 RDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSE--IEKVVAH 540
R L +GV +L ++V L+G ++GV + + I+ VVA
Sbjct: 559 E-----RLVELLYWLGVESADALSARDCFDDDRNVTVFLNGIIIGVHQNGKQLIKDVVAL 613
Query: 541 LRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIEL 600
RR K+SA + ++ + V +S G P V + + P SQ +E
Sbjct: 614 RRRGKISAFVSVFENYQQREVHISSDGGR-----LCRPLIVVENGKPLLTPKVLSQLVEG 668
Query: 601 IGPFEQVFMEIRCPDGGDGGRRNAF----------PATHEEIHPTGMLSVVANLTPYSDH 650
P ++F N TH EI P ML VVA L P+ +H
Sbjct: 669 QIPLSKLFASGVLEWIDVNEENNTLIVMRESDITPKTTHLEISPMSMLGVVAGLIPFPNH 728
Query: 651 NQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGT 710
NQSPRN YQC M KQ++G R D L+ + PQ P+V T D+ P G
Sbjct: 729 NQSPRNTYQCAMGKQSIGSIGYNQLNRCDTILHLMVYPQRPLVTTKAIQLVNFDKLPAGQ 788
Query: 711 NAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNK 770
N IVAV++Y GY++EDA+++NK+S +RG + T+++ + +R L R +
Sbjct: 789 NVIVAVMSYQGYEIEDAVVINKASSERGFSRCYSLRRVTVEIEKLNHAAERPGGLNNRPQ 848
Query: 771 DAKSLHSVID--SDGLPYVGQMIHPGEPYCSIYDKT-TNSWRTNSRK--GSESVFVDYVA 825
++ V D D + VGQ + + +T T + K ++ +VD V
Sbjct: 849 -ITNVTPVDDLTGDSVIGVGQKVKKDDTLLKKLTQTSTGQIKVTDIKYQFNQPAYVDRVM 907
Query: 826 VDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDL 885
++++ K I R R P IGDK+SSRHGQKGV + ++PFS G PDL
Sbjct: 908 CITTIAESVMYK--IMLRQVRLPEIGDKYSSRHGQKGVVGLIESQENLPFSE-HGWVPDL 964
Query: 886 IINPHAFPSRMTIAMLLESVAAK 908
I+NPH FPSRMT+ +LE VAAK
Sbjct: 965 IMNPHGFPSRMTVGKMLELVAAK 987
>gi|324120636|dbj|BAJ78709.1| RNA polymerase II second largest subunit [Zorotypus sp. 154-1]
Length = 1173
Score = 244 bits (622), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 249/944 (26%), Positives = 407/944 (43%), Gaps = 132/944 (13%)
Query: 34 MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFN---FGQFPVMLKTRRCHLQGADS 90
M + R ++Y+ L D+ + G + + G+ P+ML++ C L G
Sbjct: 107 MPNEARLRNLTYSAPLYVDITKTIVRDGEDPIEAQHQKTFIGKIPIMLRSTYCLLNGLTD 166
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
+ L L E + GGYFI+NG E+V +I ++ ++ S +D + Y K+ +
Sbjct: 167 RDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFSMKDGKYAY--KSEIRS 221
Query: 151 CVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
C+ + + TL + + G + G+ + +P+ IV +AL D +
Sbjct: 222 CLEHSSRPTSTLWVNMMARGGQSIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRD 281
Query: 201 IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
I H+ +D+ P + E VK L E + + L IG +
Sbjct: 282 ILEHIIYDFDD-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGS--RGARP 326
Query: 261 GLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
G+ E A+ +++ + H+ ++ K L +M+ +L D+ D
Sbjct: 327 GVTREKRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 386
Query: 317 QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
N+ + L G L+ + ++ L K +L + + GK F+ LA IK +K
Sbjct: 387 GNKRLDLAGPLLAFLFRGLFKN-LMKEVRLYAQKFIDRGKDFN-LELA-IK-------TK 436
Query: 377 QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
I + L TG Q Q RAG + RL F +S R V+ G +
Sbjct: 437 IITDGLRYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRVNSPIGRDG-KLA 494
Query: 437 SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
R+L WG +CP TP+G GL+ ++ ++ + IL L
Sbjct: 495 KPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYIS-----------VGSQPSPILEFL 543
Query: 497 IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAAS 550
M +L ++ S + ++G VG+ + E+++A LR+L+ VS S
Sbjct: 544 EEWSM-ENLEEIAPSAIADATKIFVNGCWVGI--HRDPEQLMATLRKLRREMDIIVSEVS 600
Query: 551 VIPD--DLEVGYVPLSLGGAYPGLYLFTSPPKFVRPV------------RNISLPSEESQ 596
+I D D E+ ++T + RP+ R+I + +
Sbjct: 601 MIRDIRDREI--------------RIYTDAGRICRPLLIVENGSLLLKKRHIDMLKDREY 646
Query: 597 N------------IELIGPF-EQVFMEIRCPDGGDGGRRNAFPA--THEEIHPTGMLSVV 641
N +E I E+ M PD + A+ TH EIHP +L V
Sbjct: 647 NNYGWQVLVSSGLVEYIDTLEEETVMIAMSPDDLRQDKEYAYCTTYTHCEIHPAMILGVC 706
Query: 642 ANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKY 701
A++ P+ DHNQSPRN YQ M KQ MG + R D + L P P+V T +
Sbjct: 707 ASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYL 766
Query: 702 GIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT-ETIDLSDDGNKVD 760
E P G N+IVA+L YTGY+ ED++ILN S+V+RG +++ + + G++ +
Sbjct: 767 RFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFFRSYKDAESKRIGDQEE 826
Query: 761 RGQKLFRRNKDA--KSLHSVIDSDGL-----------PYVGQMIHPGEPYCSIYDKTTNS 807
+ +K R+ +L+ +D DG+ +G+ + E + T
Sbjct: 827 QFEKPNRQTCQGMRNALYDKLDDDGIISPGIRVSGDDVVIGKTMTLHETDDELEGTTKRF 886
Query: 808 WRTNSR---KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVC 864
+ ++ + SE+ VD V + + NS+ + IR R R P IGDKF+SRHGQKG C
Sbjct: 887 TKRDASTFLRNSETGIVDQVMLTL-NSEGY-KFCKIRVRSVRIPQIGDKFASRHGQKGTC 944
Query: 865 SQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
+ DMPF+ G+ PD+IINPHA PSRMTI L+E + K
Sbjct: 945 GIQYRQEDMPFT-CEGLTPDIIINPHAIPSRMTIGHLIECLQGK 987
>gi|221056432|ref|XP_002259354.1| dna-directed rna polymerase, beta subunit [Plasmodium knowlesi strain
H]
gi|193809425|emb|CAQ40127.1| dna-directed rna polymerase, beta subunit,putative [Plasmodium
knowlesi strain H]
Length = 1539
Score = 244 bits (622), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 135/301 (44%), Positives = 179/301 (59%), Gaps = 27/301 (8%)
Query: 631 EIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQT 690
E+ T LS + +LTP+SDHNQSPRN+YQCQM KQTMG + + K+Y + TPQ
Sbjct: 963 ELKETSFLSFLGSLTPFSDHNQSPRNIYQCQMLKQTMGIQSLNMMYTFTNKIYRMITPQY 1022
Query: 691 PIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETI 750
P+V T Y YG+D +P+GTNA+VA+LAYTGYDMEDA+I+NKSS +RG+ IY+T I
Sbjct: 1023 PLVVTRDYELYGVDNFPSGTNAVVAILAYTGYDMEDALIINKSSAERGIFRTHIYKTIII 1082
Query: 751 DLSDDGNKVD--RGQKLFRRNKDA---------------------KSLHSVIDSDGLPYV 787
DL + D G + NK+A + + ++ DGLP V
Sbjct: 1083 DLKKNHGAGDFALGNNVRYTNKNAGTNATSANSTSTAKNNLKFQYEHMGKFLNKDGLPRV 1142
Query: 788 GQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRN 847
Q + P S +K + K +VD V + K++KN Q IR R TR
Sbjct: 1143 QQKMVELNPLYSYVNKASELTVYEKFKEHGEYYVDCVT-NYKSTKN--QIGIIRLRTTRP 1199
Query: 848 PIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAA 907
P++GDKF+SRHGQKGV S+L+P DMPFS +G+ PD+I NPH PSRMTI ML+ES+
Sbjct: 1200 PLVGDKFASRHGQKGVVSRLFPHEDMPFSE-SGIVPDVIFNPHGIPSRMTIGMLIESICG 1258
Query: 908 K 908
K
Sbjct: 1259 K 1259
Score = 115 bits (289), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 73/235 (31%), Positives = 122/235 (51%), Gaps = 27/235 (11%)
Query: 385 MLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPE 444
KTG ++++ + QQR+G+ + A+ +N LRFI+ FRA+HRG F ++ S RKLL E
Sbjct: 573 FFKTGNISSEN-IGYQQRSGWVIGADEINSLRFITNFRAIHRGCFFQEVKVLSPRKLLGE 631
Query: 445 SWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPS 504
+WGF+CPVHTPDG PCGLLNH++ V ++S N ++ + ++ + V + +
Sbjct: 632 AWGFICPVHTPDGSPCGLLNHLSQFSYV---HNSASNESHKLNIKLYLKKIGVNVNLDDT 688
Query: 505 LPKLVKSGPPAV-----LSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEV- 558
SG P + + +L+D + I + +VV L+ K + E+
Sbjct: 689 ------SGIPTIYEDQTIPILVDSVPITYISEQDFNRVVYKLKYAKNHNLYNLKAYFEIN 742
Query: 559 GYV--PLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEI 611
Y+ PL + + + T P + +RP+ N+ + IE I P Q ++ I
Sbjct: 743 AYLNEPLLMD----SIIINTFPGRLIRPLFNLKMKC-----IEYISPAYQPYVAI 788
Score = 48.9 bits (115), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 67/317 (21%), Positives = 125/317 (39%), Gaps = 54/317 (17%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
C+ + +Y G++ + + D ++ + G PVM+ + C+L + L
Sbjct: 163 CKLSARTYEGEITLKINRKTNDE---IISTTVSAGTIPVMVLSNLCNLSSLSKKMLPQKG 219
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
E+ + +GG+F+++G +V R VI PK N + D + V + C+ D S
Sbjct: 220 EDESLLGGFFVISGHLKVIRYVIHPKYNTIL------LND------ENKVHMNCLLNDNS 267
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEY-----LLPVGIVLKALVDTNDLEIFNHLTCCYDEK 212
+Y + F+ G Y ++P+ I+L L
Sbjct: 268 -----VYVNFLSCPKFDFFTYGARYQNSLMVVPLHIILLLLSPIKKKSYL---------- 312
Query: 213 YKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESY----- 267
+ K K + + VK I +Q + + L + + E + + L + SY
Sbjct: 313 FNKMKMGIKN---ENAVKYIEQYIQSIFMKNGLN-EKEVFEKYN--LKYLGNSSYFRRGI 366
Query: 268 --YAVA------ETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQ 319
Y VA + ++R I H+ ++KF + M + L N DSL+N
Sbjct: 367 FRYNVAPGERKGKIILRYAILPHIQSYSEKFETICMMFKTLIFSKFKLMAKINKDSLENH 426
Query: 320 EILLPGHLITIYLKEKL 336
+ HL++ LKE++
Sbjct: 427 AVTTCSHLLSNLLKEQI 443
>gi|387018202|gb|AFJ51219.1| polymerase (RNA) II (DNA directed) polypeptide B, 140kDa [Crotalus
adamanteus]
Length = 1167
Score = 244 bits (622), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 245/932 (26%), Positives = 402/932 (43%), Gaps = 109/932 (11%)
Query: 34 MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFN---FGQFPVMLKTRRCHLQGADS 90
M + R ++Y+ L D+ + G ++ + G+ P+ML++ C L G
Sbjct: 102 MPNEARLRNLTYSAPLYVDITKTVIKEGEDQLQTQHQKTFIGKIPIMLRSTYCLLNGLTD 161
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
+ L L E + GGYFI+NG E+V +I ++ ++ + +D + YT + R
Sbjct: 162 RDLCELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFAKKDSKYAYTGEC---R 215
Query: 151 CVRKDQS--SVTLKLYYLLNGSV---------RLGFWLQGKEYLLPVGIVLKALVDTNDL 199
++ S + T+ + L G R+ L + +P+ IV +AL +D
Sbjct: 216 SCLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDR 275
Query: 200 EIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVI 259
+I H+ +++ P + E VK L E + + L IG +
Sbjct: 276 DILEHIIYDFED-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGS--RGAK 320
Query: 260 DGLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDS 315
G+ E A+ V++ + H+ ++ K L +M+ +L D+ D
Sbjct: 321 PGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDH 380
Query: 316 LQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPS 375
N+ + L G L+ + ++ L++ + Q I + GK F+ LA IK +
Sbjct: 381 YGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFI-DRGKDFNL-ELA-IK-------T 430
Query: 376 KQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRT 435
+ I ++ L TG Q Q RAG + RL F +S R ++ G +
Sbjct: 431 RIISDGLKYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRLNSPIGRDG-KL 488
Query: 436 TSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRV 495
R+L WG +CP TP+G GL+ ++ ++ + IL
Sbjct: 489 AKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYIS-----------VGSQPSPILEF 537
Query: 496 LIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAA 549
L M +L ++ + + ++G VG+ + E+++ LR+L+ VS
Sbjct: 538 LEEWSM-ENLEEISPAAIADATKIFVNGCWVGI--HKDPEQLMNTLRKLRRQMDIIVSEV 594
Query: 550 SVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN------------ 597
S+I D E + G L K + R+I E N
Sbjct: 595 SMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGV 654
Query: 598 IELIGPFEQ--VFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPR 655
+E I E+ V + + D + G TH EIHP+ +L V A++ P+ DHNQSPR
Sbjct: 655 VEYIDTLEEETVMLAMTPDDLQEKGVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPR 714
Query: 656 NMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVA 715
N YQ M KQ MG + R D + L PQ P+V T + E P G N+IVA
Sbjct: 715 NTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVA 774
Query: 716 VLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDA--- 772
+ +YTGY+ ED++I+N+S+VDRG Y++ S G D+ + + +++
Sbjct: 775 IASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKG--YDQEEVFEKPSRETCQG 832
Query: 773 --KSLHSVIDSDGLPYVGQMIHPGE----PYCSIYDKTTNSWRTNSR----------KGS 816
+++ +D DGL G + + ++ + TN R + S
Sbjct: 833 MRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRYTKRDCSTFLRTS 892
Query: 817 ESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFS 876
E+ VD V + + + IR R R P IGDKF+SRHGQKG C + DMPF+
Sbjct: 893 ETGIVDQVMITLNQEGY--KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFT 950
Query: 877 GVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
G+ PD+IINPHA PSRMTI L+E + K
Sbjct: 951 -CEGITPDIIINPHAIPSRMTIGHLIECLQGK 981
>gi|324120678|dbj|BAJ78730.1| RNA polymerase II second largest subunit [Panorpa takenouchii]
Length = 1172
Score = 244 bits (622), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 250/947 (26%), Positives = 411/947 (43%), Gaps = 138/947 (14%)
Query: 34 MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFN---FGQFPVMLKTRRCHLQGADS 90
M + R ++Y+ L D+ + G V + G+ P+ML++ C L G
Sbjct: 106 MPNEARLRNLTYSAPLYVDITKTIVQDGKDSVETQHQKSFIGKIPIMLRSTYCLLNGLTD 165
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
+ L L E + GGYFI+NG E+V +I ++ ++ S +D + Y KA +
Sbjct: 166 RDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFSMKDGKFAY--KAEIRS 220
Query: 151 CVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
C+ + + TL + + G + G+ + +P+ IV +AL D +
Sbjct: 221 CLEHSSRPTSTLWVNMMARGGQSIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRD 280
Query: 201 IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
I H+ +D++ E + P + E + + Q+++L IG +
Sbjct: 281 ILEHIIYDFDDQ---EMMEMVKPSLDE---AFVVQEQNVALN-------FIGA--RGARP 325
Query: 261 GLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
G+ + A +++ + H+ ++ K L +M+ +L D+ D
Sbjct: 326 GVTKDKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 385
Query: 317 QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
N+ + L G L+ + ++ +++ + Q I + GK F+ LA IK +K
Sbjct: 386 GNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFI-DKGKDFNL-ELA-IK-------TK 435
Query: 377 QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
I + L TG Q Q RAG + RL F +S R ++ G +
Sbjct: 436 IITDGLRYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRINSPIGRDG-KLA 493
Query: 437 SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
R+L WG +CP TP+G GL+ ++ ++ + IL L
Sbjct: 494 KPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYIS-----------VGSQPSPILEFL 542
Query: 497 IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAAS 550
M +L ++ S + ++G VG+ + E++++ LR+L+ VS S
Sbjct: 543 EEWSM-ENLEEIAPSAIADATKIFVNGCWVGI--HRDPEQLMSTLRKLRRQMDIIVSEVS 599
Query: 551 VIPD--DLEVGYVPLSLGGAYPGLYLFTSPPKFVRPV------------RNISLPSEESQ 596
+I D D E+ ++T + RP+ R++ + E
Sbjct: 600 MIRDIRDREI--------------RIYTDAGRICRPLLIVENRNLLLKKRHVDMLKERDY 645
Query: 597 N------------IELIGPFEQ-VFMEIRCPDGGDGGRRNAFPAT--HEEIHPTGMLSVV 641
N +E I E+ M PD + A+ T H EIHP +L V
Sbjct: 646 NNYGWQVLVASGVVEYIDTLEEETVMIAMSPDDLRQEKEYAYCTTYTHCEIHPAMILGVC 705
Query: 642 ANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKY 701
A++ P+ DHNQSPRN YQ M KQ MG + R D + L P P+V T +
Sbjct: 706 ASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNYHVRMDTLAHVLYYPMKPLVTTRSMEYL 765
Query: 702 GIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQ----TETIDLSDDGN 757
E P G N IVA+L YTGY+ ED++ILN S+V+RG Y+ +ET L G+
Sbjct: 766 RFRELPAGINTIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDSETKRL---GD 822
Query: 758 KVDRGQKLFRRNKDA--KSLHSVIDSDGL-----------PYVGQMIHPGEPYCSIYDKT 804
+ ++ +K R++ +L+ +D DG+ +G+ I E + T
Sbjct: 823 QEEQFEKPTRQSCQGMRNALYDKLDEDGIIAPGIRVSGDDVIIGKTITLPENDDELEGTT 882
Query: 805 TNSWRTNSR---KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQK 861
+ ++ + SE+ VD V + + NS+ + IR R R P IGDKF+SRHGQK
Sbjct: 883 KRHTKRDASTFLRNSETGIVDQVMLTL-NSEGY-KFCKIRVRSVRIPQIGDKFASRHGQK 940
Query: 862 GVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
G C + DMPF+ G+ PD+IINPHA PSRMTI L+E + K
Sbjct: 941 GTCGIQYRQEDMPFT-CEGLTPDIIINPHAIPSRMTIGHLIECIQGK 986
>gi|449270676|gb|EMC81333.1| DNA-directed RNA polymerase II subunit RPB2, partial [Columba
livia]
Length = 1168
Score = 243 bits (621), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 247/930 (26%), Positives = 401/930 (43%), Gaps = 105/930 (11%)
Query: 34 MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFN---FGQFPVMLKTRRCHLQGADS 90
M + R ++Y+ L D+ + G ++ + G+ P+ML++ C L G
Sbjct: 103 MPNEARLRNLTYSAPLYVDITKTVIKEGEDQLQTQHQKTFIGKIPIMLRSTYCLLNGLTD 162
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
+ L L E + GGYFI+NG E+V +I ++ ++ + +D + YT + R
Sbjct: 163 RDLCELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFAKKDSKYAYTGEC---R 216
Query: 151 CVRKDQS--SVTLKLYYLLNGSV---------RLGFWLQGKEYLLPVGIVLKALVDTNDL 199
++ S + T+ + L G R+ L + +P+ IV +AL +D
Sbjct: 217 SCLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDR 276
Query: 200 EIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVI 259
+I H+ +++ P + E VK L E + + L IG +
Sbjct: 277 DILEHIIYDFED-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGS--RGAK 321
Query: 260 DGLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDS 315
G+ E A+ V++ + H+ ++ K L +M+ +L D+ D
Sbjct: 322 PGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDH 381
Query: 316 LQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPS 375
N+ + L G L+ + ++ L++ + Q I + GK F+ LA IK +
Sbjct: 382 YGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFI-DRGKDFNL-ELA-IK-------T 431
Query: 376 KQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRT 435
+ I ++ L TG Q Q RAG + RL F +S R ++ G +
Sbjct: 432 RIISDGLKYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRLNSPIGRDG-KL 489
Query: 436 TSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRV 495
R+L WG +CP TP+G GL+ ++ ++ + IL
Sbjct: 490 AKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYIS-----------VGSQPSPILEF 538
Query: 496 LIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAA 549
L M +L ++ + + ++G VG+ + E+++ LR+L+ VS
Sbjct: 539 LEEWSM-ENLEEISPAAIADATKIFVNGCWVGI--HKDPEQLMNTLRKLRRQMDIIVSEV 595
Query: 550 SVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN------------ 597
S+I D E + G L K + R+I E N
Sbjct: 596 SMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGV 655
Query: 598 IELIGPFEQ--VFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPR 655
+E I E+ V + + D + G TH EIHP+ +L V A++ P+ DHNQSPR
Sbjct: 656 VEYIDTLEEETVMLAMTPDDLQEKGVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPR 715
Query: 656 NMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVA 715
N YQ M KQ MG + R D + L PQ P+V T + E P G N+IVA
Sbjct: 716 NTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVA 775
Query: 716 VLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDG-NKVDRGQKLFRRNKDA-- 772
+ +YTGY+ ED++I+N+S+VDRG Y++ S G ++ + +K R
Sbjct: 776 IASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGYDQEEVFEKPTRETCQGMR 835
Query: 773 KSLHSVIDSDGLPYVGQMIHPGE----PYCSIYDKTTNSWRTNSR----------KGSES 818
+++ +D DGL G + + ++ + TN R + SE+
Sbjct: 836 HAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRFTKRDCSTFLRTSET 895
Query: 819 VFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGV 878
VD V V + + IR R R P IGDKF+SRHGQKG C + DMPF+
Sbjct: 896 GIVDQVMVTLNQEGY--KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFT-C 952
Query: 879 TGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
G+ PD+IINPHA PSRMTI L+E + K
Sbjct: 953 EGITPDIIINPHAIPSRMTIGHLIECLQGK 982
>gi|324120630|dbj|BAJ78706.1| RNA polymerase II second largest subunit [Oyamia lugubris]
Length = 1175
Score = 243 bits (621), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 249/944 (26%), Positives = 404/944 (42%), Gaps = 132/944 (13%)
Query: 34 MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVR---ERFNFGQFPVMLKTRRCHLQGADS 90
M + R ++Y+ L D+ + G + ++ G+ P+ML++ C L G
Sbjct: 109 MPNEARLRNLTYSAPLYVDITKTIVKDGEEPIETQHQKTFIGKIPIMLRSTYCLLSGLTD 168
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
+ L L E + GGYFI+NG E+V +I ++ ++ S +D + Y KA +
Sbjct: 169 RDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFSMKDGKFAY--KAEIRS 223
Query: 151 CVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
C+ + + TL + + G + G+ + +P+ IV +AL D +
Sbjct: 224 CLEHSSRPTSTLWVNMMARGGQSIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRD 283
Query: 201 IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
I H+ +D+ P + E VK L E + + L IG +
Sbjct: 284 ILEHIIYDFDD-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGA--RGARP 328
Query: 261 GLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
G+ E A +++ + H+ ++ K L +M+ +L D+ D
Sbjct: 329 GVTKEKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 388
Query: 317 QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
N+ + L G L+ + ++ +++ + Q I + GK F+ LA IK ++
Sbjct: 389 GNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFI-DRGKDFNL-ELA-IK-------TR 438
Query: 377 QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
I + L TG Q Q RAG + RL F +S R V+ G +
Sbjct: 439 IITDGLRYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRVNSPIGRDG-KLA 496
Query: 437 SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
R+L WG +CP TP+G GL+ ++ ++ + IL L
Sbjct: 497 KPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYIS-----------VGSQPSPILEFL 545
Query: 497 IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAAS 550
M +L ++ S + ++G VG+ + E+++A LR+L+ VS S
Sbjct: 546 EEWSM-ENLEEIAPSAIADATKIFVNGCWVGI--HRDPEQLMATLRKLRRQMDIIVSEVS 602
Query: 551 VIPD--DLEVGYVPLSLGGAYPGLYLFTSPPKFVRPV------------RNISLPSEESQ 596
+I D D E+ ++T + RP+ R++ + E
Sbjct: 603 MIRDIRDREI--------------RIYTDAGRICRPLLIVEGGNLLLKKRHVDMLKEREY 648
Query: 597 N------------IELIGPFEQ-VFMEIRCPDGGDGGRRNAFPAT--HEEIHPTGMLSVV 641
N +E I E+ M PD + A+ T H EIHP +L V
Sbjct: 649 NNFGWQVLVASGVVEYIDTLEEETVMIAMSPDDLRQEKEYAYCTTYTHCEIHPAMILGVC 708
Query: 642 ANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKY 701
A++ P+ DHNQSPRN YQ M KQ MG + R D + L P P+V T +
Sbjct: 709 ASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYL 768
Query: 702 GIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT-ETIDLSDDGNKVD 760
E P G N+IVA+L YTGY+ ED++ILN S+V+RG Y++ + + G++ +
Sbjct: 769 RFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDAESKRIGDQEE 828
Query: 761 RGQKLFRRNKDA--KSLHSVIDSDGLPYVGQMIHPGE----PYCSIYDKTTNSWRTNSR- 813
+ +K R +L+ +D DG+ G + + ++ D T R
Sbjct: 829 QFEKPTRATCQGMRNALYDKLDDDGIIAPGIRVSGDDVVIGKTITLPDNEDELEGTTKRY 888
Query: 814 ---------KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVC 864
+ SE+ VD V + + NS+ + IR R R P IGDKF+SRHGQKG C
Sbjct: 889 TKRDASTFLRNSETGIVDQVMLTL-NSEGY-KFCKIRVRSVRIPQIGDKFASRHGQKGTC 946
Query: 865 SQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
+ DM F+ G+ PD+IINPHA PSRMTI L+E + K
Sbjct: 947 GIQYRQEDMAFTA-EGLTPDIIINPHAIPSRMTIGHLIECLQGK 989
>gi|406699010|gb|EKD02230.1| DNA-directed RNA polymerase [Trichosporon asahii var. asahii CBS
8904]
Length = 941
Score = 243 bits (620), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 211/766 (27%), Positives = 344/766 (44%), Gaps = 91/766 (11%)
Query: 184 LPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTT 243
+P+ I LKA+ T+D EI L C DEKY++ G + L E L + T
Sbjct: 44 IPIVIALKAMGVTSDKEIL-QLVCGPDEKYQEAFG------------MSLEEAARLRVYT 90
Query: 244 RLQCLQHIGEHFQPVID---------------GLQSESYYAVAETVIRDYIFVHLNDNND 288
R + L+ IG P + +Q+ + + +RD F
Sbjct: 91 RREALEWIGARVSPTQEKEDRSLGHKLTPTDMAMQALAAMVLGHVPVRDMNF------RP 144
Query: 289 KFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQ 348
K L M +++ + + ++ D+ D + N+ + L G L+++ ++ + + KK +
Sbjct: 145 KAIYLATMSRRVLAAMLDENMVDDRDYVGNKRLELAGQLLSLLFEDSFKTFNSDLKKRMD 204
Query: 349 DEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQ 408
+E + F + ++ I ++ + TG + + +RAG T
Sbjct: 205 KILEKKTRAGPF----DASTLVRTGGGDIITSAFVRSISTGNWSLKRFH--VERAGVTHV 258
Query: 409 AERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMT 467
RL+F+ + + + F R S R L P WG LCP TP+GE CGL+ ++
Sbjct: 259 LSRLSFIAALGMMTRIT--SQFEKTRKVSGPRALQPSQWGMLCPSDTPEGEACGLVKNLA 316
Query: 468 STCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVG 527
+ + I+ + + + G +L + G V V ++G ++G
Sbjct: 317 LMTHITTDVPEDPLIKLAFVLGAEDISLATG-------NELYRDG---VHLVQVNGNLIG 366
Query: 528 VIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRN 587
V ++ K V R+L+ S + +V + + +Y+ + + RP+
Sbjct: 367 V--TALPRKFVRTFRKLRRSGRT-------SEFVSIYINHHQRVIYIASDGGRICRPLII 417
Query: 588 I--SLPSEESQNIELIGPFEQV---FMEIRCPDGGDGGRRN-AFPATHE----------E 631
+ P S++++L+ + F+ + D N +F A +E E
Sbjct: 418 VENGRPRVTSEHMQLLKAGKVTFDHFLRSGLVEYLDVNEENDSFIACYESEITEDTTHLE 477
Query: 632 IHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTP 691
I P +L VA L PY HNQSPRN YQC M KQ +G R D LY + PQ P
Sbjct: 478 IEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQLNRIDTLLYLMTYPQQP 537
Query: 692 IVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETID 751
+V+T T G D P G NA VAV++Y+GYD+EDA+I+N++S DRG + + +TI
Sbjct: 538 MVKTKTIELVGYDRLPAGQNATVAVMSYSGYDIEDALIVNRASADRGFGRCHVLKKQTIP 597
Query: 752 LSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGE-------PYCSIYDKT 804
+ N + ++ ++ HS +D DGL G ++ G+ P +
Sbjct: 598 IRSFPNGTSERLAMLPPDQRPET-HSWLDQDGLVAPGSVVSQGDVLAARETPMDTRGPGP 656
Query: 805 TNSWRTN--SRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKG 862
T ++ + K E +D V V N Q I R TR P +GDKFSSRHGQKG
Sbjct: 657 TVGFKATPVAHKLPEPTNIDKVMVTDTEDGN--QLIKILTRQTRRPELGDKFSSRHGQKG 714
Query: 863 VCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
VC + P DMPF+ G+ PD+I+NPH FPSRMT+ ++E ++ K
Sbjct: 715 VCGLIVPQQDMPFND-QGICPDIIMNPHGFPSRMTVGKMIELLSGK 759
>gi|171186405|ref|YP_001795324.1| DNA-directed RNA polymerase subunit B [Pyrobaculum neutrophilum
V24Sta]
gi|170935617|gb|ACB40878.1| RNA polymerase Rpb2 domain 6 [Pyrobaculum neutrophilum V24Sta]
Length = 1127
Score = 243 bits (620), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 250/905 (27%), Positives = 399/905 (44%), Gaps = 136/905 (15%)
Query: 57 YLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVF 116
Y+D P V E F G+ P+M+K++RC+L + + E+ + GGYFI+NG ERV
Sbjct: 117 YVD-DEPYVTETFYIGELPIMVKSKRCNLTRLRPGEYIKKFEDPQDFGGYFIINGSERV- 174
Query: 117 RSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSSVTLK--LYYLLNGSVRLG 174
I+ +++ + DR DK V + + + + L LN +
Sbjct: 175 ---IISQEDL---VADRPIYDR----GDKPSVKYIAKTISTGIGYRSTLTVELNRDGVIY 224
Query: 175 FWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILA 234
L +P I +KAL D ++ ++ D + +KE + S + + ++ I
Sbjct: 225 VTLSAMPVKIPFPIYMKALGLETDEDVVKAVSD--DPEIQKE--LLPSLIAANQIAI--- 277
Query: 235 EVQDLSLTTRLQCLQHIGEHF---QPVIDGLQSESYYAVAETVIRDYIFVHLNDNN---- 287
TR L IG QP ++ E Y + + Y HL
Sbjct: 278 --------TREDALDFIGGKVAVGQP--KPIRVEKAYQLLDK----YFLPHLGTTTPDEK 323
Query: 288 -------DKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWL 340
K +L +++ L L D+ D + N+ + L G L+T + L+ +L
Sbjct: 324 RQQEIRLKKALMLGQIVKGLVELQLGRRKPDDKDHVANKRVRLVGDLMTQLFRTVLKQFL 383
Query: 341 RKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQ 400
++ K ++ ++ I P Q + + + R A TG +
Sbjct: 384 QELKSQLEK----------YYARGRI-------PHIQTIVRPDIITERVRQALATGNWVG 426
Query: 401 QRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT---SVRKLLPESWGFLCPVHTPDG 457
+ G + +R N++ +S+ R V S RT R L P WG LC V TP+G
Sbjct: 427 GKTGVSQILDRTNYMSTLSYLRRVVSSLS----RTQPHFEARDLHPTQWGRLCAVETPEG 482
Query: 458 EPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVL 517
+ GL+ ++ + + D + ++L +G++P L K + G
Sbjct: 483 QNVGLVKNLALLAEITTGVDE-----------GEVEQLLYNLGVVPLL-KAREEGIRGA- 529
Query: 518 SVLLDGRVVGVIPS-SEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSL-----GGAYPG 571
V ++GR++GV P+ E+ K V +RR I D++ + Y+ S+ GG
Sbjct: 530 EVYINGRLIGVHPNPEELAKTVRGMRR-----QGKISDEINIAYLDGSVYVNCDGGRIRR 584
Query: 572 LYLFTS------PPKFVRPVRNISLPSEESQN---IELIGPFEQVFMEIRC-PDGGDGGR 621
L + V VR L ++ IE + E+ I PD
Sbjct: 585 PLLVVEGGRLKLTKEIVEKVRRGDLTWDDLVKMGVIEYLDADEEENAHIAVDPD------ 638
Query: 622 RNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQK 681
+ TH EI P+ +L V ++ PY +HNQSPRN Y+ MAKQ++G ++ D +
Sbjct: 639 VDLSNYTHVEIVPSSILGAVGSIIPYLEHNQSPRNQYEAAMAKQSLGLPQSNFLYKLDSR 698
Query: 682 LYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCH 741
+ L P+ PIV T G P G NA+VA+L YTGY++EDA+ILNK+SV+RGM
Sbjct: 699 GHMLYYPERPIVTTRGLELVGYSRRPAGQNAVVALLTYTGYNIEDAVILNKASVERGMFR 758
Query: 742 GQIYQT-------------ETIDLSDDGNKVDRGQKLFRR-NKDAKSLHSVIDSDGLPYV 787
Y+T + I++ D K RG + + ++D + V S V
Sbjct: 759 SVFYRTYETEEQKYPGGEEDKIEIPDSSVKGYRGPEAYSHLDEDGIAPPEVYVSSNEVLV 818
Query: 788 GQMIHPGEPYCSIYDKTTNSWRTNS----RKGSESVFVDYVAVDMKNSKNLPQKANIRFR 843
G+ P Y ++ + R ++ R+G + + VD V + N + +R R
Sbjct: 819 GKT-SPPRFYTTLEAERILKERRDASVAVRRGEKGI-VDRVIITESPEGN--KLVKVRLR 874
Query: 844 HTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLE 903
R P +GDKF+SRHGQKGV L DMPF+ G+ PD+I+NPHA PSRMT+A LLE
Sbjct: 875 ELRVPELGDKFASRHGQKGVVGMLLRHEDMPFTE-DGIVPDIIVNPHALPSRMTVAQLLE 933
Query: 904 SVAAK 908
S+A K
Sbjct: 934 SMAGK 938
>gi|324120654|dbj|BAJ78718.1| RNA polymerase II second largest subunit [Uroleucon
nigrotuberculatum]
Length = 1177
Score = 243 bits (619), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 247/933 (26%), Positives = 404/933 (43%), Gaps = 110/933 (11%)
Query: 34 MFDHCRQAKISYTGKLMADVEFQYL-DAGSPVVRERFN--FGQFPVMLKTRRCHLQGADS 90
M + R ++Y+ L D+ + D PVV + G+ P+ML++ C L G +
Sbjct: 110 MPNEARLRNLTYSAPLYVDITKTVIKDGEEPVVTQHSKSFIGKIPIMLRSTYCLLFGLND 169
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
+ L L E + GGYFI+NG E+V +I ++ ++ S +D + Y KA +
Sbjct: 170 RDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFSMKDGK--YAFKAEIRS 224
Query: 151 CVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
C+ + + TL + + G + G+ + +P+ IV +AL D +
Sbjct: 225 CLEHSSRPTSTLWVNMMARGGQSIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRD 284
Query: 201 IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
I H+ +D+ P + E VK L E + + L IG +
Sbjct: 285 ILEHIIYDFDD-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGS--RGARP 329
Query: 261 GLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
G+ + A +++ + H+ ++ K L +M+ +L D+ D
Sbjct: 330 GVTKDKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDRDHY 389
Query: 317 QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
N+ + L G L+ + ++ +++ + Q I+ GK F+ +LA IK +K
Sbjct: 390 GNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFIDR-GKDFNL-DLA-IK-------TK 439
Query: 377 QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
I + L TG Q Q RAG + RL F +S R V+ G +
Sbjct: 440 LITDGLRYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRVNSPIGRDG-KLA 497
Query: 437 SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
R+L WG LCP TP+G GL+ ++ ++ + IL L
Sbjct: 498 KPRQLHNTLWGMLCPAETPEGAAVGLVKNLALMAYIS-----------VGSQPSPILEFL 546
Query: 497 IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAAS 550
M +L ++ S + ++G VG+ + E+++ LR+L+ VS S
Sbjct: 547 EEWSM-ENLEEIAPSAIVDATKIFVNGCWVGI--HRDPEQLMGTLRKLRRQMDIIVSEVS 603
Query: 551 VIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN------------I 598
+I D + + G L K + R+I E N +
Sbjct: 604 IIRDIRDREIRIYTDAGRICRPLLIVENGKLLLKKRHIDSLKERDYNNYGWQVLVSNGVV 663
Query: 599 ELIGPFEQ-VFMEIRCPDGGDGGRRNAFPAT--HEEIHPTGMLSVVANLTPYSDHNQSPR 655
E I E+ M PD + A+ T H EIHP +L V A++ P+ DHNQSPR
Sbjct: 664 EYIDTLEEETTMIAMSPDDLRQEKEYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPR 723
Query: 656 NMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVA 715
N YQ M KQ MG + R D + L P P+V T + E P G N+IVA
Sbjct: 724 NTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVA 783
Query: 716 VLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRR-NKDA-- 772
+L YTGY+ ED++ILN S+V+RG +++ + ++ +++F + N+ +
Sbjct: 784 ILCYTGYNQEDSVILNASAVERGFFRSVFFRSYK---DSESKRIGDQEEVFEKPNRQSCQ 840
Query: 773 ---KSLHSVIDSDGLPYVGQMIHPGEPYCSIY-------DKTTNSWRTNSR-------KG 815
+++ +D DG+ G + + D+ + + S+ +
Sbjct: 841 GMRNAIYDKLDDDGIISPGLRVSGDDVIIGKTMTLPDNEDELEGTTKKYSKRDCSTFLRN 900
Query: 816 SESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPF 875
SE+ +D V + + NS+ + IR R R P IGDKF+SRHGQKG C + DMPF
Sbjct: 901 SETGLIDQVLLTL-NSEGY-KFCKIRVRSERIPQIGDKFASRHGQKGTCGIQYRQEDMPF 958
Query: 876 SGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
+ G+ PD+IINPHA PSRMTI L+E + K
Sbjct: 959 T-CEGITPDIIINPHAIPSRMTIGHLIECLQGK 990
>gi|324120680|dbj|BAJ78731.1| RNA polymerase II second largest subunit [Ctenocephalides felis]
Length = 1175
Score = 243 bits (619), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 250/945 (26%), Positives = 410/945 (43%), Gaps = 134/945 (14%)
Query: 34 MFDHCRQAKISYTGKLMADV-EFQYLDAGSPV--VRERFNFGQFPVMLKTRRCHLQGADS 90
M + R ++Y+ L D+ + +D PV ++ G+ P+ML++ C L G
Sbjct: 109 MPNEARLRNLTYSAPLYVDITKTIIMDGKDPVETQHQKTFIGKIPIMLRSTYCLLSGLTD 168
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
+ L L E + GGYFI+NG E+V +I ++ ++ S +D + + KA +
Sbjct: 169 RDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFSMKDGKFAF--KAEIRS 223
Query: 151 CVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
C+ + + TL + + G + G+ + +P+ IV +AL D +
Sbjct: 224 CLEHSSRPTSTLWVNMMARGGQSIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRD 283
Query: 201 IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
I H+ +D++ E + P + E + + Q+++L IG +
Sbjct: 284 ILEHIIYDFDDQ---EMMEMVKPSLDE---AFVVQEQNVALN-------FIGA--RGARP 328
Query: 261 GLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
G+ + A +++ + H+ ++ K L +M+ +L D+ D
Sbjct: 329 GVTKDKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 388
Query: 317 QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
N+ + L G L+ + ++ +++ + Q I + GK F+ LA IK +K
Sbjct: 389 GNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFI-DRGKDFNL-ELA-IK-------TK 438
Query: 377 QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
I + L TG Q Q RAG + RL F +S R V+ G +
Sbjct: 439 IITDGLRYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRVNSPIGRDG-KLA 496
Query: 437 SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
R+L WG +CP TP+G GL+ ++ ++ + IL L
Sbjct: 497 KPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYIS-----------VGSQPSPILEFL 545
Query: 497 IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAAS 550
M +L ++ S + ++G VG+ + E+++ LR+L+ VS S
Sbjct: 546 EEWSM-ENLEEIAPSAIADATKIFVNGCWVGI--HRDPEQLMTTLRKLRRQMDIIVSEVS 602
Query: 551 VIPD--DLEVGYVPLSLGGAYPGLYLFTSPPKFVRPV------------RNISLPSEE-- 594
+I D D E+ ++T + RP+ R+I + E
Sbjct: 603 MIRDIRDREI--------------RIYTDAGRICRPLLIVENRTLLLKKRHIDMLKERDY 648
Query: 595 ----------SQNIELIGPFEQ-VFMEIRCPDGGDGGRRNAFPAT--HEEIHPTGMLSVV 641
S +E I E+ M PD R A+ T H EIHP +L V
Sbjct: 649 TNYGWQVLVASGVVEYIDTLEEETVMIAMSPDDLRQERAYAYCTTYTHCEIHPAMILGVC 708
Query: 642 ANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKY 701
A++ P+ DHNQSPRN YQ M KQ MG + R D + L P P+V T +
Sbjct: 709 ASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPMKPLVTTRSMEYL 768
Query: 702 GIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQ----TETIDLSDDGN 757
E P G N+IVA+L YTGY+ ED++ILN S+V+RG Y+ +ET + D
Sbjct: 769 RFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDSETKRMGDQEE 828
Query: 758 KVDRGQKLFRRNKDAKSLHSVIDSDGL-----------PYVGQMIHPGEPYCSIYDKTTN 806
+ ++ + + +L+ +D DG+ +G+ I E + T
Sbjct: 829 QFEKPNRQTCQGM-RNALYDKLDEDGIIAPGIRVSGDDVIIGKTITLPENDDELEGTTKR 887
Query: 807 SWRTNSR---KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGV 863
+ ++ + SE+ VD V + + NS+ + IR R R P IGDKF+SRHGQKG
Sbjct: 888 HTKRDASTFLRNSETGIVDQVMLTL-NSEGY-KFCKIRVRSVRIPQIGDKFASRHGQKGT 945
Query: 864 CSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
C + DMPF+ G+ PD+IINPHA PSRMTI L+E + K
Sbjct: 946 CGIQYRQEDMPFT-CEGLMPDIIINPHAIPSRMTIGHLIECIQGK 989
>gi|431893877|gb|ELK03694.1| DNA-directed RNA polymerase II subunit RPB2 [Pteropus alecto]
Length = 1167
Score = 243 bits (619), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 243/932 (26%), Positives = 398/932 (42%), Gaps = 109/932 (11%)
Query: 34 MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVR---ERFNFGQFPVMLKTRRCHLQGADS 90
M + R ++Y+ L D+ + G ++ ++ G+ P+ML++ C L G
Sbjct: 102 MPNEARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTD 161
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
+ L L E + GGYFI+NG E+V +I ++ ++ + +D + YT + R
Sbjct: 162 RDLCELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFAKKDSKYAYTGEC---R 215
Query: 151 CVRKDQS--SVTLKLYYLLNGSV---------RLGFWLQGKEYLLPVGIVLKALVDTNDL 199
++ S + T+ + L G R+ L + +P+ IV +AL +D
Sbjct: 216 SCLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDR 275
Query: 200 EIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVI 259
+I H+ +++ P + E VK L E + + L IG +
Sbjct: 276 DILEHIIYDFED-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGS--RGAK 320
Query: 260 DGLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDS 315
G+ E A+ V++ + H+ ++ K L +M+ +L D+ D
Sbjct: 321 PGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDH 380
Query: 316 LQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPS 375
N+ + L G L+ + ++ L++ + Q I + GK F+ N +
Sbjct: 381 YGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFI-DRGKDFNLELAIN---------T 430
Query: 376 KQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRT 435
K I ++ L TG Q Q RAG + RL F +S R ++ G +
Sbjct: 431 KIISDGLKYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRLNSPIGRDG-KL 488
Query: 436 TSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRV 495
R+L WG +CP TP+G GL+ ++ ++ + IL
Sbjct: 489 AKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYIS-----------VGSQPSPILEF 537
Query: 496 LIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAA 549
L M +L ++ + + ++G VG+ + E+++ LR+L+ VS
Sbjct: 538 LEEWSM-ENLEEISPAAIADATKIFVNGCWVGI--HKDPEQLMNTLRKLRRQMDIIVSEV 594
Query: 550 SVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN------------ 597
S+I D E + G L K + R+I E N
Sbjct: 595 SMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGV 654
Query: 598 IELIGPFEQ--VFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPR 655
+E I E+ V + + D + TH EIHP+ +L V A++ P+ DHNQSPR
Sbjct: 655 VEYIDTLEEETVMLAMTPDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPR 714
Query: 656 NMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVA 715
N YQ M KQ MG + R D + L PQ P+V T + E P G N+IVA
Sbjct: 715 NTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVA 774
Query: 716 VLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDA--- 772
+ +YTGY+ ED++I+N+S+VDRG Y++ S G D+ + + ++
Sbjct: 775 IASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKG--FDQEEVFEKPTRETCQG 832
Query: 773 --KSLHSVIDSDGLPYVGQMIHPGE----PYCSIYDKTTNSWRTNSR----------KGS 816
+++ +D DGL G + + ++ + TN R + S
Sbjct: 833 MRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRYTKRDCSTFLRTS 892
Query: 817 ESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFS 876
E+ VD V V + + IR R R P IGDKF+SRHGQKG C + DMPF+
Sbjct: 893 ETGIVDQVMVTLNQEGY--KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFT 950
Query: 877 GVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
G+ PD+IINPHA PSRMTI L+E + K
Sbjct: 951 -CEGITPDIIINPHAIPSRMTIGHLIECLQGK 981
>gi|170591608|ref|XP_001900562.1| DNA-directed RNA polymerase II second largest subunit [Brugia
malayi]
gi|158592174|gb|EDP30776.1| DNA-directed RNA polymerase II second largest subunit, putative
[Brugia malayi]
Length = 1185
Score = 242 bits (618), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 247/942 (26%), Positives = 401/942 (42%), Gaps = 120/942 (12%)
Query: 34 MFDHCRQAKISYTGKLMADVEFQYLDAGSP---VVRERFNFGQFPVMLKTRRCHLQGADS 90
M + R ++Y+ L D+ +G E+ G+ P+ML++ C L
Sbjct: 111 MPNEARLRNLTYSSPLYIDITKTMTRSGEEPKETKYEKVFVGKIPIMLRSSYCMLANMSD 170
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
+ L L E + GGYF++NG E+V +I ++ ++ S +D + YT K
Sbjct: 171 RDLSELNECPLDPGGYFVINGSEKV---LIAQEKMATNTVYVFSMKDGK--YTYKTECRS 225
Query: 151 CVRKDQSSVTLKLYYLLNGSVRL---GFWLQ--------------GKEYL---------L 184
C+ + S LK Y+L V W+ G + + +
Sbjct: 226 CL--ENSRQVLKQYFLSILEVTRPTSTLWVNMLPRGGGGSKKSAMGPKIIAILPYIKQEI 283
Query: 185 PVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTR 244
PV IV +AL +D +I H+ +++ P + E VK L E + +
Sbjct: 284 PVMIVFRALGFVSDHDILEHIIYDFED-----------PEMMEMVKPSLDEA--FVIQEQ 330
Query: 245 LQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKL 300
L IG + G+ E A +++ + H+ ++ K L +M+ +L
Sbjct: 331 NVALNFIGA--RGAKPGVTKEQRIKYAREILQKEMLPHVGISDFCETKKAYFLGYMVHRL 388
Query: 301 FSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDF 360
D+ D + N+ + L G L+ + + L++ + Q I NG DF
Sbjct: 389 LLAALGRRELDDRDHMGNKRLDLAGPLLAFLFRALFRNLLKEVRLTAQKYINKNG---DF 445
Query: 361 FNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISF 420
+K + I + L TG Q Q RAG + RL + +S
Sbjct: 446 MLDLCVKTPL-------ITRGLAYSLATGNWGDQKKAH-QSRAGVSQVLNRLTYTATLSH 497
Query: 421 FRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRG 480
R + G + R+L WG +CP TP+G+ GL+ ++ Y S G
Sbjct: 498 LRRCNSPIGREG-KLAKPRQLHNTQWGMVCPAETPEGQAVGLVKNLALMA-----YISVG 551
Query: 481 NIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAH 540
++ + IL L M +L ++ + + ++G VG+ + E+++
Sbjct: 552 SLPE------PILEFLEEWSM-ENLEEVAPTAIADATKIFVNGAWVGI--HRDPEQLMTT 602
Query: 541 LRRLK------VSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEE 594
L++L+ VS S++ D + + G L K ++I +
Sbjct: 603 LKKLRREMDIIVSEVSMVRDIRDREIRIYTDAGRVCRPLLIVENQKLALKRKHIDQLKDN 662
Query: 595 SQN---------IELIGPFEQ--VFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVAN 643
S +ELI E+ V + + D GG + + TH EIHP +L V A+
Sbjct: 663 SYTWSELVAGGVVELIDAMEEETVMLAMMPEDLKAGGYCDTY--THCEIHPAMILGVCAS 720
Query: 644 LTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGI 703
+ P+ DHNQSPRN YQ M KQ MG R D + L PQ P+V T +
Sbjct: 721 IIPFPDHNQSPRNTYQSAMGKQAMGVYTTNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRF 780
Query: 704 DEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQ 763
+E P G NAIVA+L+YTGY+ ED++I+N+S +DRG+ Y++ ++ N +
Sbjct: 781 NELPAGINAIVAILSYTGYNQEDSIIMNQSGIDRGLFRSVFYRSYRDQEANLDNANEELI 840
Query: 764 KLFRRNKDAKSLHSV---IDSDGLPYVGQMIHPGE----PYCSIYD----------KTTN 806
+ R+K + HS+ +D DG+ G + + S+ D + T
Sbjct: 841 EKPTRDKCSGMRHSLYDKLDEDGIISPGMRVSGDDVIIGKTISLPDTEDDLDAAIKRYTK 900
Query: 807 SWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQ 866
+ + SE+ VD V + + N + IR R R P IGDKF+SRHGQKG
Sbjct: 901 KDASTFLRSSETGIVDQVMLTLNTDGN--KFVKIRVRSVRLPQIGDKFASRHGQKGTMGM 958
Query: 867 LWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
++ DMPF+ G+ PD+IINPHA PSRMTI L+E + K
Sbjct: 959 MYRQEDMPFTN-EGITPDIIINPHAVPSRMTIGHLIECLQGK 999
>gi|321470077|gb|EFX81055.1| hypothetical protein DAPPUDRAFT_102782 [Daphnia pulex]
Length = 1174
Score = 242 bits (618), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 244/929 (26%), Positives = 398/929 (42%), Gaps = 103/929 (11%)
Query: 34 MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFN---FGQFPVMLKTRRCHLQGADS 90
M + R ++Y+ L D+ G V + G+ P+ML++ C L G +
Sbjct: 109 MPNEARLRNLTYSAPLYVDITKTVHKEGEEQVETQHQKTFIGKIPIMLRSTYCLLNGMND 168
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
+ L L E + GGYFI+NG E+V +I ++ ++ S +D + Y K +
Sbjct: 169 RDLCELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFSMKDGKFAY--KTEIRS 223
Query: 151 CVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
C+ + + TL + L G + G+ + +P+ IV +AL D +
Sbjct: 224 CLEHSSRPTSTLYVNMLARGGQGIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRD 283
Query: 201 IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
I H+ +++ P + E VK L E + + L IG +
Sbjct: 284 ILEHIIYDFED-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGA--RGARP 328
Query: 261 GLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
G+ E A +++ + H+ ++ K L +M+ +L D+ D
Sbjct: 329 GVTKEKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 388
Query: 317 QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
N+ + L G L+ + + +++ + Q I + GK F+ LA IK ++
Sbjct: 389 GNKRLDLAGPLMAFLFRALFKTLMKEVRMYAQKFI-DRGKDFNL-ELA-IK-------TR 438
Query: 377 QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
I + L TG Q Q RAG + RL F +S R V+ G +
Sbjct: 439 IITDGLRYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRVNSPIGRDG-KLA 496
Query: 437 SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
R+L WG +CP TP+G GL+ ++ ++ + IL L
Sbjct: 497 KPRQLHNTLWGMVCPAETPEGAAVGLVKNLALMAYIS-----------VGSQPSPILEFL 545
Query: 497 IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAAS 550
M +L ++ S + ++G VG+ + E+++A LR+L+ VS S
Sbjct: 546 EEWSM-ENLEEIAPSAIADATKIFVNGCWVGI--HRDPEQLMATLRKLRRQMDIIVSEVS 602
Query: 551 VIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNIS-LPSEESQN-----------I 598
++ D + + G L K + R++ L E N +
Sbjct: 603 MVRDIQDREIRIYTDAGRICRPLLIVENCKLLLKKRHVDMLKQREYINFSWQELVATGVV 662
Query: 599 ELIGPFEQ--VFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRN 656
E I E+ + + D G TH EIHP +L V A++ P+ DHNQSPRN
Sbjct: 663 EYIDTLEEETAMIAMSPEDLRQGKDAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPRN 722
Query: 657 MYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAV 716
YQ M KQ MG + R D + LQ PQ P+V T + E P G N++VA+
Sbjct: 723 TYQSAMGKQAMGVYITNFHVRMDTLAHVLQYPQKPLVTTRSMEYLRFRELPAGINSVVAI 782
Query: 717 LAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSD-DGNKVDRGQKLFRRNKDA--K 773
L+YTGY+ ED++I+N S+V+RG +++ S ++ + +K FR +
Sbjct: 783 LSYTGYNQEDSVIMNASAVERGFFRSVFFRSYKDQESKRSADQEETFEKPFRDHCQGMRN 842
Query: 774 SLHSVIDSDGL-----------PYVGQMIHPGEPYCSIYDKTTNSWRTNSR---KGSESV 819
+++ +D DG+ +G+ I E + T + ++ + SE+
Sbjct: 843 AIYDKLDDDGIIAPGLRVSGDDVVIGKTITLPENDDDLESTTKKFSKRDASTFLRHSETG 902
Query: 820 FVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVT 879
VD V + + N + IR R R P IGDKF+SRHGQKG C + DMPF+
Sbjct: 903 IVDQVMLTLNAEGN--KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFT-CE 959
Query: 880 GMRPDLIINPHAFPSRMTIAMLLESVAAK 908
G+ PD+IINPHA PSRMTI L+E + K
Sbjct: 960 GLTPDIIINPHAIPSRMTIGHLIECLQGK 988
>gi|256081821|ref|XP_002577166.1| DNA-directed RNA polymerase III subunit [Schistosoma mansoni]
gi|360043958|emb|CCD81504.1| putative dna-directed RNA polymerase III subunit [Schistosoma
mansoni]
Length = 1128
Score = 242 bits (618), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 246/925 (26%), Positives = 398/925 (43%), Gaps = 121/925 (13%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR ++Y G+++ DV F + V ++ G+ P+MLK+ C L G +L+ LK
Sbjct: 79 CRLRDLTYAGEILVDVTF--VRQNEVVSKKGVLIGRMPIMLKSSICVLNGKSPSELMRLK 136
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
E + GGYFI+ G E+V V++ +Q ++ D + G K ++
Sbjct: 137 ECPLDPGGYFIIGGTEKV---VLMQEQTSKNRLIIEE--DSKRGLVCSVTSSSAQTKSKT 191
Query: 158 SVTLK--LYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKK 215
++ K +YL + S + +P+ I+ KA+ T+D E+ + ++
Sbjct: 192 NIVTKDDKFYLSHNSFIVD---------VPIAILFKAMNITSDQELLQLIGT------EE 236
Query: 216 EKGAVGSPLVSERVKIILAEVQDLS--LTTRLQCLQH-----IGEHFQPVIDGLQSESYY 268
A P + ++ + D L +RL+ ++ G + + L+++
Sbjct: 237 SVWANFVPSLKLCLEYNIHTCLDACNWLHSRLRQPRYRTAFGAGRTLRTAANILETDIIL 296
Query: 269 AVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFS---LVDHTSVS-DNPDSLQNQEILLP 324
+ + +RD I H+ F F L ++ L + + D+ D N+ I L
Sbjct: 297 EI-QRFLRDIIITHVEMEKLNFAPRAFFLGQMVRYLILANEKRIPPDDRDFYGNKRIELA 355
Query: 325 GHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIET 384
G L+ + ++ + + + L +I+ + F +IK M + +S
Sbjct: 356 GSLLALLFEDVFKTF-NEDLWLTVSKIDTKRRCTPFDISRHIKTWMITEQLNRAISSGNW 414
Query: 385 MLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLLP 443
++K R+ R G T RL+++ + + F R S R +
Sbjct: 415 IIKRFRM---------MRHGVTQVVSRLSYVAALGHM--TRMTSQFEKTRKVSGPRSIHA 463
Query: 444 ESWGFLCPVHTPDGEPCG------LLNHMTSTCRVASYYDSRGNIRDFS--KMRTSILRV 495
WG +CP TP+GE CG L+ H+T A + N F +MR +
Sbjct: 464 SQWGLICPSDTPEGEACGLVKNVALMCHVTVEVDDAHLIELISNYYTFPLYQMRYAKNEY 523
Query: 496 LIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDD 555
+I V P + + P L VL+ G + S I V+ + V+ D
Sbjct: 524 VIYVNGKP----IGFTQHPGKLCVLIRG----LRRSGRIHGFVSVYIKQAYQCVHVVSD- 574
Query: 556 LEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNI----ELI--GPFEQ--- 606
GG + Y+ RP+ S+ + N+ +L+ G E
Sbjct: 575 ----------GGRFCRPYIILCNG---RPLVTESVLQDLRHNVLNWDDLLKKGLVEYLDV 621
Query: 607 -------VFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQ 659
V M+ C G+ TH EI P +L VVA L PY DHNQSPRN YQ
Sbjct: 622 NELNDCLVAMDESCLTDGNH-------YTHMEIDPATILGVVAGLIPYPDHNQSPRNTYQ 674
Query: 660 CQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAY 719
C M KQ +G + R D + PQ P+V++ T DE P G NA+VA+++Y
Sbjct: 675 CAMGKQAIGTVALNQQIRFDTLQCQMVYPQKPLVQSKTIQMMHFDELPAGQNAVVAIMSY 734
Query: 720 TGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKV-DR--GQKLFRRNKDAKSLH 776
+GYD+EDA+++N++S+DRG +Y+ + L N V DR G + R +
Sbjct: 735 SGYDVEDALVINQASIDRGFARACVYRRSGVHLKMHENAVYDRLMGPSIERETGVLRRGD 794
Query: 777 SVIDSDGLPYVGQ-------MIHPGEPYCSIYDKTTNSWRTNSR------KGSESVFVDY 823
V+ +DG+ Y+G +I+ P S N+ + KG E +V+
Sbjct: 795 EVLQADGVAYIGACVNDRQILINKEMPVVSSSAVLDNAGSLKFKRCPVDYKGIEPSYVEK 854
Query: 824 VAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRP 883
V S+ I R TR P +GDKFSSRHGQKGV + D+PFS G+ P
Sbjct: 855 VM--FSTSEGNQAVVKILLRQTRRPEVGDKFSSRHGQKGVVGLIVRQEDLPFS-TNGLTP 911
Query: 884 DLIINPHAFPSRMTIAMLLESVAAK 908
D+I+NPH FPSRMT+ LLE + +K
Sbjct: 912 DIIMNPHGFPSRMTVGKLLEVLGSK 936
>gi|327279896|ref|XP_003224691.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Anolis
carolinensis]
Length = 1174
Score = 242 bits (618), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 244/931 (26%), Positives = 401/931 (43%), Gaps = 107/931 (11%)
Query: 34 MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVR---ERFNFGQFPVMLKTRRCHLQGADS 90
M + R ++Y+ L D+ + G ++ ++ G+ P+ML++ C L G
Sbjct: 109 MPNEARLRNLTYSAPLYVDITKTVVKEGEDQLQTQHQKTFIGKIPIMLRSTYCLLNGLTD 168
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
+ L L E + GGYFI+NG E+V +I ++ ++ + +D + YT +
Sbjct: 169 RDLCQLNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFAKKDSKYAYTGECR--S 223
Query: 151 CVRKD-QSSVTLKLYYLLNGSV---------RLGFWLQGKEYLLPVGIVLKALVDTNDLE 200
C+ + + T+ + L G R+ L + +P+ IV +AL +D +
Sbjct: 224 CLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRD 283
Query: 201 IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
I H+ +++ P + E VK L E + + L IG +
Sbjct: 284 ILEHIIYDFED-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGS--RGAKP 328
Query: 261 GLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
G+ E A+ V++ + H+ ++ K L +M+ +L D+ D
Sbjct: 329 GVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 388
Query: 317 QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
N+ + L G L+ + ++ L++ + Q I + GK F+ LA IK ++
Sbjct: 389 GNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFI-DRGKDFNL-ELA-IK-------TR 438
Query: 377 QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
I ++ L TG Q Q RAG + RL F +S R ++ G +
Sbjct: 439 IISDGLKYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRLNSPIGRDG-KLA 496
Query: 437 SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
R+L WG +CP TP+G GL+ ++ ++ + IL L
Sbjct: 497 KPRQLHNTLWGMICPAETPEGHAVGLVKNLALMAYIS-----------VGSQPSPILEFL 545
Query: 497 IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAAS 550
M +L ++ + + ++G VG+ + E+++ LR+L+ VS S
Sbjct: 546 EEWSM-ENLEEISPAAIADATKIFVNGCWVGI--HKDPEQLMNTLRKLRRQMDIIVSEVS 602
Query: 551 VIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN------------I 598
+I D E + G L K + R+I E N +
Sbjct: 603 MIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVV 662
Query: 599 ELIGPFEQ--VFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRN 656
E I E+ V + + D + G TH EIHP+ +L V A++ P+ DHNQSPRN
Sbjct: 663 EYIDTLEEETVMLAMTPDDLQEKGIAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRN 722
Query: 657 MYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAV 716
YQ M KQ MG + R D + L PQ P+V T + E P G N+IVA+
Sbjct: 723 TYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAI 782
Query: 717 LAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDA---- 772
+YTGY+ ED++I+N+S+VDRG Y++ S G D+ + + ++
Sbjct: 783 ASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKG--FDQEEVFEKPTRETCQGM 840
Query: 773 -KSLHSVIDSDGLPYVGQMIHPGE----PYCSIYDKTTNSWRTNSR----------KGSE 817
+++ +D DGL G + + ++ + TN R + SE
Sbjct: 841 RHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRYTKRDCSTFLRTSE 900
Query: 818 SVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSG 877
+ VD V V + + I+ R R P IGDKF+SRHGQKG C + DMPF+
Sbjct: 901 TGIVDQVMVTLNQEGY--KFCKIKVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFT- 957
Query: 878 VTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
G+ PD+IINPHA PSRMTI L+E + K
Sbjct: 958 CEGITPDIIINPHAIPSRMTIGHLIECLQGK 988
>gi|291190610|ref|NP_001167150.1| DNA-directed RNA polymerase II subunit RPB2 [Salmo salar]
gi|223648370|gb|ACN10943.1| DNA-directed RNA polymerase II subunit RPB2 [Salmo salar]
Length = 1174
Score = 242 bits (618), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 248/935 (26%), Positives = 399/935 (42%), Gaps = 115/935 (12%)
Query: 34 MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFN---FGQFPVMLKTRRCHLQGADS 90
M + R ++Y+ L D+ + G ++ + G+ P+ML++ C L G
Sbjct: 109 MPNEARLRNLTYSAPLYVDITKTIIKEGEDQLQTQHQKTFIGKIPIMLRSTYCLLSGLTD 168
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
+ L L E + GGYFI+NG E+V +I ++ ++ + +D + YT + R
Sbjct: 169 RDLCELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFAKKDSKYAYTGEC---R 222
Query: 151 CVRKDQSSVTLKLY--YLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDL 199
++ S T ++ + G + G+ + +P+ IV +AL +D
Sbjct: 223 SCLENSSRPTSSIWVSMMARGGQGVKKSAIGQRIVSTLPYIRQEVPIIIVFRALGFVSDR 282
Query: 200 EIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVI 259
+I H+ +D+ P + E VK L E + + L IG +
Sbjct: 283 DILEHIIYDFDD-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGS--RGAK 327
Query: 260 DGLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDS 315
G+ E A+ V++ + H+ ++ K L +M+ +L D+ D
Sbjct: 328 PGVTKERRIKYAKEVLQKEVLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDH 387
Query: 316 LQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPS 375
N+ + L G L+ + ++ L++ + Q I + GK F+ LA IK +
Sbjct: 388 YGNKRLDLAGPLLAFLFRGMFKNLLKEIRIYAQKFI-DRGKDFN-LELA-IK-------T 437
Query: 376 KQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRT 435
+ I ++ L TG Q RAG + RL F +S R V+ G +
Sbjct: 438 RIISDGLKYSLATGNWGDVKKAH-QARAGVSQVLNRLTFASTLSHLRRVNSPIGRDG-KL 495
Query: 436 TSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRV 495
R+L WG +CP TP+G GL+ ++ ++ + IL
Sbjct: 496 AKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYIS-----------VGSQPSPILEF 544
Query: 496 LIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAA 549
L M +L ++ + + ++G VG+ + E+++ LR+L+ VS
Sbjct: 545 LEEWSM-ENLEEISPAAIADATKIFVNGCWVGI--HKDPEQLMNTLRKLRRQMDIIVSEV 601
Query: 550 SVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN------------ 597
S+I D E + G L K + R+I E N
Sbjct: 602 SMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKRRHIDQLKEREYNNYSWQDLVASGV 661
Query: 598 IELIGPFEQ--VFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPR 655
+E I E+ V + + D + G +H EIHP+ +L V A++ P+ DHNQSPR
Sbjct: 662 VEYIDTLEEETVMLAMTPDDLQEKGVAYCSTYSHCEIHPSMILGVCASIIPFPDHNQSPR 721
Query: 656 NMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVA 715
N YQ M KQ MG + R D + L PQ P+V T + E P G N+IVA
Sbjct: 722 NTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVA 781
Query: 716 VLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKS- 774
+ AYTGY+ ED++I+N+S+VDRG Y++ S G D+ + + ++ S
Sbjct: 782 IAAYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKG--FDQEEIFEKPTRETCSG 839
Query: 775 ----LHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSR----------------- 813
++ +D DGL G + GE I KT T+
Sbjct: 840 MRHAIYDKLDDDGLIAPGVRV-SGEDV--IIGKTVTLPETDDELDSTNRRYTKRDCSTFL 896
Query: 814 KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDM 873
+ SE+ VD V V + + IR R R P IGDKF+SRHGQKG C + DM
Sbjct: 897 RTSETGIVDQVMVTLNQEGY--KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDM 954
Query: 874 PFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
PF+ G+ PD+IINPHA PSRMT+ L+E + K
Sbjct: 955 PFT-CEGITPDIIINPHAIPSRMTVGHLIECLQGK 988
>gi|194386684|dbj|BAG61152.1| unnamed protein product [Homo sapiens]
Length = 1083
Score = 242 bits (618), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 246/929 (26%), Positives = 400/929 (43%), Gaps = 109/929 (11%)
Query: 37 HCRQAKISYTGKLMADVEFQYLDAGSPVVR---ERFNFGQFPVMLKTRRCHLQGADSQKL 93
H R ++Y+ L D+ + G ++ ++ G+ P+ML++ C L G + L
Sbjct: 21 HARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDRDL 80
Query: 94 VSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVR 153
L E + GGYFI+NG E+V +I ++ ++ + +D + YT + R
Sbjct: 81 CELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFAKKDSKYAYTGEC---RSCL 134
Query: 154 KDQS--SVTLKLYYLLNGSV---------RLGFWLQGKEYLLPVGIVLKALVDTNDLEIF 202
++ S + T+ + L G R+ L + +P+ IV +AL +D +I
Sbjct: 135 ENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRDIL 194
Query: 203 NHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGL 262
H+ +++ P + E VK L E + + L IG + G+
Sbjct: 195 EHIIYDFED-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGS--RGAKPGV 239
Query: 263 QSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSLQN 318
E A+ V++ + H+ ++ K L +M+ +L D+ D N
Sbjct: 240 TKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGN 299
Query: 319 QEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQI 378
+ + L G L+ + ++ L++ + Q I + GK F+ LA IK ++ I
Sbjct: 300 KRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFI-DRGKDFNL-ELA-IK-------TRII 349
Query: 379 GTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSV 438
++ L TG Q Q RAG + RL F +S R ++ G +
Sbjct: 350 SDGLKYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRLNSPIGRDG-KLAKP 407
Query: 439 RKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIG 498
R+L WG +CP TP+G GL+ ++ ++ + IL L
Sbjct: 408 RQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYIS-----------VGSQPSPILEFLEE 456
Query: 499 VGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAASVI 552
M +L ++ + + ++G VG+ + E+++ LR+L+ VS S+I
Sbjct: 457 WSM-ENLEEISPAAIADATKIFVNGCWVGI--HKDPEQLMNTLRKLRRQMDIIVSEVSMI 513
Query: 553 PDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN------------IEL 600
D E + G L K + R+I E N +E
Sbjct: 514 RDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEY 573
Query: 601 IGPFEQ--VFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMY 658
I E+ V + + D + TH EIHP+ +L V A++ P+ DHNQSPRN Y
Sbjct: 574 IDTLEEETVMLAMTPDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTY 633
Query: 659 QCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLA 718
Q M KQ MG + R D + L PQ P+V T + E P G N+IVA+ +
Sbjct: 634 QSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIAS 693
Query: 719 YTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDA-----K 773
YTGY+ ED++I+N+S+VDRG Y++ S G D+ + + ++
Sbjct: 694 YTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKG--FDQEEVFEKPTRETCQGMRH 751
Query: 774 SLHSVIDSDGLPYVGQMIHPGEPYCS----IYDKTTNSWRTNSR----------KGSESV 819
+++ +D DGL G + + S + + TN R + SE+
Sbjct: 752 AIYDKLDDDGLIAPGVRVSGDDVIISKTVTLPENEDELESTNRRYTKRDCSTFLRTSETG 811
Query: 820 FVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVT 879
VD V V + + IR R R P IGDKF+SRHGQKG C + DMPF+
Sbjct: 812 IVDQVMVTLNQEGY--KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFT-CE 868
Query: 880 GMRPDLIINPHAFPSRMTIAMLLESVAAK 908
G+ PD+IINPHA PSRMTI L+E + K
Sbjct: 869 GITPDIIINPHAIPSRMTIGHLIECLQGK 897
>gi|268563827|ref|XP_002647022.1| Hypothetical protein CBG24045 [Caenorhabditis briggsae]
Length = 1078
Score = 242 bits (617), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 243/931 (26%), Positives = 407/931 (43%), Gaps = 126/931 (13%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR ++Y+ + D+E Y V ++ G+ P+ML++ +C L+ ++L ++
Sbjct: 18 CRLRDMTYSAPISVDIE--YTRGHQRVYKKDLVIGRMPIMLRSSKCILRDLAEEELARVQ 75
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
E + GGYF++ G E+V IL ++ + + R+ + + + RK ++
Sbjct: 76 ECPHDPGGYFVVKGSEKV----ILIQEQLSKNRIMVG-RNSSKELQCEVLSSTSERKSKT 130
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
VT+K SVR +PV I+ KA+ +D +I + T ++EKY
Sbjct: 131 YVTVKKGKY---SVRHNQLTDD----VPVSIIFKAMGVESDFDIVS--TIGHEEKY---- 177
Query: 218 GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHI-----GEHFQPV--IDGLQSESYYAV 270
VS + L E + + T+ Q L ++ F P + G A
Sbjct: 178 -------VSAFAQT-LEECINAGVYTQQQALAYVTSKVKARKFTPFGSLPGTSVSVLTAP 229
Query: 271 AETVIRDYI----FVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNP----DSLQNQEIL 322
E D++ H+ + F + L ++ + T + +N D N+ +
Sbjct: 230 KEHEAVDFLSNSMITHIACPDGNFKMKAIYLGQMTRRLIQTEMGENELDDRDFYGNKRLE 289
Query: 323 LPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSI 382
L G L+ + ++ + + + K+ I +N +I K M ++ I +I
Sbjct: 290 LAGSLLALLFEDVFKRFNSELKR-----IADNALMKTMAAPLDIVKHMRQD---MITNTI 341
Query: 383 ETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKL 441
+ TG + +R G T RL+++ + ++ ++F R S R L
Sbjct: 342 VNAMSTGNWIIKRFR--MERLGVTQVLSRLSYISALGMMTRIN--STFEKTRKVSGPRSL 397
Query: 442 LPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGM 501
P WG LCP TP+GE CGL+ ++ + + D + +LR+L+ G
Sbjct: 398 QPSQWGMLCPSDTPEGEACGLVKNLALISHITTDSDEK-----------PVLRLLLNSG- 445
Query: 502 IPSLPKLVKS--GPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVG 559
+ L + S P + L+G ++G + + E+VV +R L+ S L
Sbjct: 446 VEDLHNVHFSHVNKPENTLIFLNGVLIGT--AVDPERVVKAVRDLRRSG-------LLSE 496
Query: 560 YVPLSLGGAYPGLYLFTSPPKFVRP---VRNISLPSEESQNIELIGPFEQVFMEI----- 611
+V +S +++ + + RP VR+ P +++ + +++F +
Sbjct: 497 FVSVSRSMTNRSVFISSDGGRLCRPYIIVRH-GKPMLTETHVQELKEGKRIFEDFVDDGI 555
Query: 612 -------RCPDGGDGGRRNAFPA--THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQM 662
D N A TH EI P +L V A L PY HNQSPRN YQC M
Sbjct: 556 VEYLDVNEMNDALIAVYENEIGAETTHLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAM 615
Query: 663 AKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGY 722
KQ MG + R D +Y L PQ P+V++ T ++ P G N I+AV++Y+GY
Sbjct: 616 GKQAMGTIAYNQQKRIDSIMYLLCYPQRPLVKSKTIELTNFEKLPAGANGIIAVMSYSGY 675
Query: 723 DMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKV-DRGQKLFRRNKDAKSL-----H 776
D+EDA++LNK+S+DRG +Y+ N+ DR L D+ +L H
Sbjct: 676 DIEDALVLNKASLDRGYGRCLVYKHVKGTAKKYPNQTYDR---LLGPAVDSVTLKPIFKH 732
Query: 777 SVIDSDGLPYVGQMIHPGEP----YCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSK 832
+D +G+ + G I P + Y + + S + + G V Y V +
Sbjct: 733 KNLDQEGIVFTGARILPKQTIINKYMPVVSAESGSAASANTIGIAGRDVAYKDVSITYKT 792
Query: 833 NLPQKA---------------NIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSG 877
P A + R TR P +GDKFSSRHGQKGVC + DMPF+
Sbjct: 793 PTPSYAERVLLTYNEDEAHLFKVLLRQTRRPELGDKFSSRHGQKGVCGLIAQQEDMPFND 852
Query: 878 VTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
+ GM PD+I+NPH +PSRMT+ L+E ++ K
Sbjct: 853 L-GMVPDMIMNPHGYPSRMTVGKLMELLSGK 882
>gi|198423468|ref|XP_002121670.1| PREDICTED: similar to polymerase (RNA) III (DNA directed)
polypeptide B [Ciona intestinalis]
Length = 1141
Score = 242 bits (617), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 238/924 (25%), Positives = 404/924 (43%), Gaps = 121/924 (13%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR ++Y+ + D+E Y ++R+ G+ P+ML++ C L G + +L +
Sbjct: 103 CRLRDMTYSASITVDIE--YTRGQQRIIRKALPIGRMPIMLRSSNCVLTGKNGVELAKMN 160
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
E + GGYF+ G+E+V +++ +Q MS R R+G+ +V
Sbjct: 161 ECPYDPGGYFVCKGVEKV---ILIQEQ---MSKNRMIVERDRKGFCSCSV---------H 205
Query: 158 SVTLKLYYLLNGSVRLG-FWLQGKEYL--LPVGIVLKALVDTNDLEIFNHLTCCYDEKYK 214
S T + +N + G F+LQ +P+ ++ KA+ ++ I + +
Sbjct: 206 SSTHEKKTRVNVLQKKGHFYLQQNALNEDMPICVIFKAMGVESEQSIMQLIGT------E 259
Query: 215 KEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHF--QPVIDGLQSESYYAVAE 272
+ ++ SP L + L + T+LQ ++I Q + G +S
Sbjct: 260 ENVMSMFSP--------SLEDCHKLEVFTQLQASKYISGKIRRQRPVWGAARQSKTDETR 311
Query: 273 TVIRDYIFVHL-----NDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHL 327
+ + H+ N + L + + + + + + + V D D N+ + L G L
Sbjct: 312 DWLNTTLLAHIPVTDWNYHAKAVYLALMIRRIILTQLGYLEVDDR-DYYGNKRMELAGGL 370
Query: 328 ITIYLKEKLEDWLRKGKKLIQDEI-ENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETML 386
I++ ++ + + + KK+ I + +FD V+ I TS+ +
Sbjct: 371 ISLLFEDLFKRFNSELKKIADLTIPKPRAAQFD---------VVRHMRQDLITTSLVIAI 421
Query: 387 KTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLLPES 445
+G + +R G T RL+++ + + + F R S R L P
Sbjct: 422 SSGNWIVKRFK--MERKGVTQVLTRLSYISALGMMTRI--ASQFEKTRKVSGPRSLQPSQ 477
Query: 446 WGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSL 505
WG LCP TP+GE CGL+ ++ + + R + + +L G + L
Sbjct: 478 WGMLCPSDTPEGEACGLVKNLALMTHITVDVEEEPTARLLFNLGVEDVYMLSGEEIHSQL 537
Query: 506 PKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSL 565
+V L+G V+GV+ + +V LR ++ + D ++ +S
Sbjct: 538 SYIV----------FLNGLVLGVV--RDPVHLVTTLRLMR--RHGYLND-----FISVST 578
Query: 566 GGAYPGLYLFTSPPKFVRPVRNISL--PSEESQNIELIG----PFEQVFMEIRCPDGGDG 619
A+ +Y+ + + RP +S P S +IE + FE F+ + D
Sbjct: 579 NRAHRTVYVSSDGGRLCRPYIIVSKGKPLVTSHHIEELKRGLRSFED-FLRSGLVEYLDV 637
Query: 620 GRRN-----------AFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMG 668
N +TH EI P +L V A L PY HNQSPRN YQC M KQ MG
Sbjct: 638 SEENDCFVALDESYITHKSTHLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMG 697
Query: 669 FSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAM 728
+ R D +Y L PQ P+V++ T ++ P G NAI+AV++Y+GYD+EDA+
Sbjct: 698 TIGYNQQQRIDTLMYLLVYPQAPLVKSRTIELINFEKLPAGQNAIIAVMSYSGYDIEDAL 757
Query: 729 ILNKSSVDRGMCHGQIYQTETIDLSDDGNKV-DR--GQKLFRRNKDAKSLHSVIDSDGLP 785
+LN++SVDRG +Y+ + L N+ D+ G L ++ H +D+DG+
Sbjct: 758 VLNRASVDRGYGRCLVYRNQKCILKRYANQTFDKVMGPALNAETREPIWRHQGLDADGII 817
Query: 786 YVGQMIHPGEP-YCSIYDKT------------------TNSWRTN--SRKGSESVFVDYV 824
G + + C +Y + S++ S +G ++ V
Sbjct: 818 MPGVKVESKQKIMCXLYXXXXXXXXXXXXXXXXXLQGPSTSYQETPISYRGPVGSTIEKV 877
Query: 825 AVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPD 884
V N ++ K I R TR P +GDKFSSRHGQKGV + DMPF+ G+ PD
Sbjct: 878 MVSSNNEESSLIK--ILLRQTRRPELGDKFSSRHGQKGVTGLIVQQADMPFNQ-DGICPD 934
Query: 885 LIINPHAFPSRMTIAMLLESVAAK 908
+I+NPH +PSRMT+ L+E + +K
Sbjct: 935 VIMNPHGYPSRMTVGKLMELLGSK 958
>gi|324120614|dbj|BAJ78698.1| RNA polymerase II second largest subunit [Isonychia japonica]
Length = 1150
Score = 242 bits (617), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 245/939 (26%), Positives = 405/939 (43%), Gaps = 122/939 (12%)
Query: 34 MFDHCRQAKISYTGKLMADVEFQYLDAGSPVV---RERFNFGQFPVMLKTRRCHLQGADS 90
M + R ++Y+ L D+ + G + ++ G+ P+ML++ C L G
Sbjct: 84 MPNEARLRNLTYSAPLYVDITKTVVKEGEDPIDTQHQKTFIGKIPIMLRSTYCLLNGLTD 143
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
+ L L E + GGYFI+NG E+V +I ++ ++ + +D + Y + IR
Sbjct: 144 RDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFAMKDGKFAYKAE---IR 197
Query: 151 CVRKDQSSVTLKLYYLLNGSVRLGFWLQ----GKEYL---------LPVGIVLKALVDTN 197
++ S T L+ +N R G ++ G+ + +P+ IV +AL
Sbjct: 198 SCQEHSSRPTSTLW--VNMMARSGQSIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVA 255
Query: 198 DLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQP 257
D +I H+ +D+ P + E VK L E + + L IG +
Sbjct: 256 DRDILEHIIYDFDD-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGA--RG 300
Query: 258 VIDGLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNP 313
G+ E A +++ + H+ ++ K L +M+ +L D+
Sbjct: 301 ARPGVTKEKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALSRRELDDR 360
Query: 314 DSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKN 373
D N+ + L G L+ + ++ +++ + Q I + GK F+ LA IK
Sbjct: 361 DHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFI-DRGKDFN-LELA-IK------ 411
Query: 374 PSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGL 433
+K I + L TG Q Q RAG + RL F +S R V+ G
Sbjct: 412 -TKIITDGLRYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRVNSPIGRDG- 468
Query: 434 RTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSIL 493
+ R+L WG +CP TP+G GL+ ++ ++ + IL
Sbjct: 469 KLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYIS-----------VGSQPSPIL 517
Query: 494 RVLIGVGMIPSLPKLVKSGPPAVL---SVLLDGRVVGVIPSSEIEKVVAHLRRLK----- 545
L S+ L + P A+L + ++G VG+ + E+++A LR+L+
Sbjct: 518 EFLEEW----SMENLEEIAPSAILDATKIFVNGCWVGI--HRDPEQLMATLRKLRRQMDI 571
Query: 546 -VSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN------- 597
VS S+I D + + G L + R+I + + N
Sbjct: 572 IVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENSNLLLKKRHIDMLKDRDYNNYGWQFL 631
Query: 598 -----IELIGPF-EQVFMEIRCPDGGDGGRRNAFPA--THEEIHPTGMLSVVANLTPYSD 649
+E I E+ M P+ + A+ TH EIHP +L V A++ P+ D
Sbjct: 632 VSSGVVEYIDTLEEETVMIAMSPEDLHHDKEYAYCTTYTHCEIHPAMILGVCASIIPFPD 691
Query: 650 HNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTG 709
HNQSPRN YQ M KQ MG + R D + L PQ P+V T + E P G
Sbjct: 692 HNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAG 751
Query: 710 TNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRN 769
N++VA+ YTGY+ ED++I+N S+V+RG Y++ + ++ ++ F +
Sbjct: 752 INSVVAIACYTGYNQEDSVIMNASAVERGFFRSIFYRSYK---DQESKRIGDQEEQFEKP 808
Query: 770 KDA------KSLHSVIDSDGL-----------PYVGQMIHPGEPYCSIYDKTTNSWRTNS 812
A +++ +D DG+ +G+ I E + T + ++
Sbjct: 809 NRATCQGMRNAIYDKLDDDGIIAPGVRVSGDDVIIGKTITLPENDDELEGTTKRYTKRDA 868
Query: 813 R---KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWP 869
+ SE+ VD V + + NS+ + + IR R R P IGDKF+SRHGQKG C +
Sbjct: 869 STFLRNSETGIVDQVMITL-NSEGY-KFSKIRVRSVRIPQIGDKFASRHGQKGTCGIQYR 926
Query: 870 DIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
DMPF+ G+ PD++INPHA PSRMTI L+E + K
Sbjct: 927 QEDMPFT-CEGLTPDIVINPHAIPSRMTIGHLIECLQGK 964
>gi|402869721|ref|XP_003898896.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 2
[Papio anubis]
Length = 1083
Score = 242 bits (617), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 245/929 (26%), Positives = 400/929 (43%), Gaps = 109/929 (11%)
Query: 37 HCRQAKISYTGKLMADVEFQYLDAGSPVVR---ERFNFGQFPVMLKTRRCHLQGADSQKL 93
H R ++Y+ L D+ + G ++ ++ G+ P+ML++ C L G + L
Sbjct: 21 HARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTDRDL 80
Query: 94 VSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVR 153
L E + GGYFI+NG E+V +I ++ ++ + +D + YT + R
Sbjct: 81 CELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFAKKDSKYAYTGEC---RSCL 134
Query: 154 KDQS--SVTLKLYYLLNGSV---------RLGFWLQGKEYLLPVGIVLKALVDTNDLEIF 202
++ S + T+ + L G R+ L + +P+ IV +AL +D +I
Sbjct: 135 ENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRDIL 194
Query: 203 NHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGL 262
H+ +++ P + E VK L E + + L IG + G+
Sbjct: 195 EHIIYDFED-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGS--RGAKPGV 239
Query: 263 QSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSLQN 318
E A+ V++ + H+ ++ K L +M+ +L D+ D N
Sbjct: 240 TKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGN 299
Query: 319 QEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQI 378
+ + L G L+ + ++ L++ + Q I + GK F+ LA IK ++ I
Sbjct: 300 KRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFI-DRGKDFNL-ELA-IK-------TRII 349
Query: 379 GTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSV 438
++ L TG Q Q RAG + RL F +S R ++ G +
Sbjct: 350 SDGLKYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRLNSPIGRDG-KLAKP 407
Query: 439 RKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIG 498
R+L WG +CP TP+G GL+ ++ ++ + IL L
Sbjct: 408 RQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYIS-----------VGSQPSPILEFLEE 456
Query: 499 VGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAASVI 552
M +L ++ + + ++G VG+ + E+++ LR+L+ VS S+I
Sbjct: 457 WSM-ENLEEISPAAIADATKIFVNGCWVGI--HKDPEQLMNTLRKLRRQMDIIVSEVSMI 513
Query: 553 PDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN------------IEL 600
D E + G L K + R+I E N +E
Sbjct: 514 RDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEY 573
Query: 601 IGPFEQ--VFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMY 658
I E+ V + + D + TH EIHP+ +L V A++ P+ DHNQSPRN Y
Sbjct: 574 IDTLEEETVMLAMTPDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTY 633
Query: 659 QCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLA 718
Q M KQ MG + R D + L PQ P+V T + E P G N+IVA+ +
Sbjct: 634 QSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIAS 693
Query: 719 YTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDA-----K 773
YTGY+ ED++I+N+S+VDRG Y++ S G D+ + + ++
Sbjct: 694 YTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKG--FDQEEVFEKPTRETCQGMRH 751
Query: 774 SLHSVIDSDGLPYVGQMIHPGE----PYCSIYDKTTNSWRTNSR----------KGSESV 819
+++ +D DGL G + + ++ + TN R + SE+
Sbjct: 752 AIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRYTKRDCSTFLRTSETG 811
Query: 820 FVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVT 879
VD V V + + IR R R P IGDKF+SRHGQKG C + DMPF+
Sbjct: 812 IVDQVMVTLNQEGY--KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFT-CE 868
Query: 880 GMRPDLIINPHAFPSRMTIAMLLESVAAK 908
G+ PD+IINPHA PSRMTI L+E + K
Sbjct: 869 GITPDIIINPHAIPSRMTIGHLIECLQGK 897
>gi|345495600|ref|XP_003427537.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB2 [Nasonia vitripennis]
Length = 1174
Score = 242 bits (617), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 246/930 (26%), Positives = 400/930 (43%), Gaps = 104/930 (11%)
Query: 34 MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVR---ERFNFGQFPVMLKTRRCHLQGADS 90
M + R ++Y+ L D+ G + ++ G+ P+ML+++ C L G
Sbjct: 108 MPNEARLRNLTYSAPLYVDITKTIEKDGEEPIETQHQKTFIGKIPIMLRSKYCLLAGLSD 167
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
+ L L E + GGYFI+NG E+V +I ++ ++ S +D + Y K +
Sbjct: 168 RDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFSMKDGK--YAFKCEIRS 222
Query: 151 CVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
C+ + + TL + + + G+ + +P+ IV +AL D +
Sbjct: 223 CLEHSSRPTSTLWINMMAKSGANIKKSAIGQRIVAVLPYIRQEIPIMIVFRALGFVADRD 282
Query: 201 IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
I H+ +D+ P + E VK L E + + L IG +
Sbjct: 283 ILEHIIYDFDD-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGT--RGARP 327
Query: 261 GLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
G+ + A+ +++ H+ ++ K L +M+ +L S D+ D
Sbjct: 328 GVTKDKRIKYAKEILQKETLPHVGISDFCETKKAYFLGYMVHRLLSASLGRRELDDRDHY 387
Query: 317 QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
N+ + L G L+ + ++ +++ + Q I + GK F+ LA IK +K
Sbjct: 388 GNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFI-DRGKDFNL-ELA-IK-------TK 437
Query: 377 QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
I + L TG Q L RAG + RL F +S R V+ G +
Sbjct: 438 IITDGLRYSLATGNWGDQKKAHLA-RAGVSQVLNRLTFASTLSHLRRVNSPIGRDG-KLA 495
Query: 437 SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
R+L WG LCP TP+G GL+ ++ ++ + IL L
Sbjct: 496 KPRQLHNTLWGMLCPAETPEGAAVGLVKNLALMAYIS-----------VGSQPSPILEFL 544
Query: 497 IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAAS 550
M +L ++ S + ++G VG+ + ++++A LR+L+ VS S
Sbjct: 545 EEWSM-ENLEEIAPSAIADATKIFVNGCWVGI--HRDPDQLMATLRKLRRQMDIIVSEVS 601
Query: 551 VIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN------------I 598
+I D + + G L + R+I + + N +
Sbjct: 602 MIRDIRDREIRIYTDAGRISRPLLIVENQTLLLKKRHIDMLKDRDYNNDGWQELVASGVV 661
Query: 599 ELIGPFEQ-VFMEIRCPDGGDGGRRNAFPAT--HEEIHPTGMLSVVANLTPYSDHNQSPR 655
E I E+ M PD + A+ +T H EIHP +L V A++ P+ DHNQSPR
Sbjct: 662 EYIDTLEEETVMIAMSPDDLKQEKEYAYCSTYTHCEIHPAMILGVCASIIPFPDHNQSPR 721
Query: 656 NMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVA 715
N YQ M + MG + R D + L P P+V T + E P G N+IVA
Sbjct: 722 NTYQVNMFPKVMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVA 781
Query: 716 VLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT-ETIDLSDDGNKVDRGQKLFRRNKDA-- 772
+L YTGY+ ED++ILN S+V+RG Y++ + + G++ ++ +K R+
Sbjct: 782 ILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDSETKKFGDQEEQFEKPSRQTCQGMR 841
Query: 773 KSLHSVIDSDGLPYVG------------QMIHP--GEPYCSIYDKTTNSWRTNSRKGSES 818
+L+ +D DG+ G M P + S + T + + SE+
Sbjct: 842 NALYDKLDDDGIIAPGIRVSGDDVVIGKTMTLPENDDELDSTTKRFTKRDASTFLRNSET 901
Query: 819 VFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGV 878
VD V + + NS+ + IR R R P IGDKF+SRHGQKG C + DMPFS
Sbjct: 902 GIVDQVMLTL-NSEGY-KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFS-C 958
Query: 879 TGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
G+ PD+IINPHA PSRMTI L+E + K
Sbjct: 959 EGLTPDIIINPHAIPSRMTIGHLIECIQGK 988
>gi|348542471|ref|XP_003458708.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Oreochromis
niloticus]
Length = 1174
Score = 242 bits (617), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 246/932 (26%), Positives = 400/932 (42%), Gaps = 109/932 (11%)
Query: 34 MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFN---FGQFPVMLKTRRCHLQGADS 90
M + R ++Y+ L D+ + G ++ + G+ P+ML++ C L G
Sbjct: 109 MPNEARLRNLTYSAPLYVDITKTIIKEGEDQLQTQHQKTFIGKIPIMLRSTYCLLSGLTD 168
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
+ L L E + GGYFI+NG E+V +I ++ ++ + +D + YT A
Sbjct: 169 RDLCELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFAKKDSKYAYT--AECRS 223
Query: 151 CVRKD-QSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
C+ + + T+ + + G + G+ + +P+ IV +AL +D +
Sbjct: 224 CLENSSRPTSTIWVSMMARGGQGVKKSAIGQRIVSTLPYIRQEVPIIIVFRALGFVSDRD 283
Query: 201 IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
I H+ +D+ P + E VK L E + + L IG +
Sbjct: 284 ILEHIIYDFDD-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGS--RGAKP 328
Query: 261 GLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
G+ E A+ V++ + H+ ++ K L +M+ +L D+ D
Sbjct: 329 GVTKERRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 388
Query: 317 QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
N+ + L G L+ + ++ L++ + Q I + GK F+ LA IK ++
Sbjct: 389 GNKRLDLAGPLLAFLFRGMFKNLLKEIRIYAQKFI-DRGKDFNL-ELA-IK-------TR 438
Query: 377 QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
I ++ L TG Q RAG + RL F +S R V+ G +
Sbjct: 439 IISDGLKYSLATGNWGDVKKAH-QARAGVSQVLNRLTFASTLSHLRRVNSPIGRDG-KLA 496
Query: 437 SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
R+L WG +CP TP+G GL+ ++ ++ + IL L
Sbjct: 497 KPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYIS-----------VGSQPSPILEFL 545
Query: 497 IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAAS 550
M +L ++ + + ++G VG+ + E+++ LR+L+ VS S
Sbjct: 546 EEWSM-ENLEEISPAAIADATKIFVNGCWVGI--HKDPEQLMNTLRKLRRQMDIIVSEVS 602
Query: 551 VIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN------------I 598
+I D E + G L K + R+I E N +
Sbjct: 603 MIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKRRHIDQLKEREYNNYSWQDLVASGVV 662
Query: 599 ELIGPFEQ--VFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRN 656
E I E+ V + + D + G TH EIHP+ +L V A++ P+ DHNQSPRN
Sbjct: 663 EYIDTLEEETVMLAMTPDDLQEKGVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRN 722
Query: 657 MYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAV 716
YQ M KQ MG + R D + L PQ P+V T + E P G N+IVA+
Sbjct: 723 TYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAI 782
Query: 717 LAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDA---- 772
+YTGY+ ED++I+N+S+VDRG Y++ S G D+ + + ++
Sbjct: 783 ASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKG--FDQEEIFEKPTRETCQGM 840
Query: 773 -KSLHSVIDSDGLPYVGQMIHPGE-----PYCSIYDKTTNSWRTNSR----------KGS 816
+++ +D DGL G + GE ++ + TN R + S
Sbjct: 841 RHAIYDKLDDDGLIAPGVRV-SGEDVIIGKTVTLPENDDELDSTNRRYTKRDCSTFLRTS 899
Query: 817 ESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFS 876
E+ VD V V + + IR R R P IGDKF+SRHGQKG C + DMPF+
Sbjct: 900 ETGIVDQVMVTLNQEGY--KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFT 957
Query: 877 GVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
G+ PD+IINPHA PSRMT+ L+E + K
Sbjct: 958 -CEGITPDIIINPHAIPSRMTVGHLIECLQGK 988
>gi|396082220|gb|AFN83830.1| DNA-directed RNA polymerase subunit beta [Encephalitozoon romaleae
SJ-2008]
Length = 1141
Score = 242 bits (617), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 247/928 (26%), Positives = 406/928 (43%), Gaps = 118/928 (12%)
Query: 36 DHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFN---FGQFPVMLKTRRCHLQGADSQK 92
+ R ++Y L DV + + V + +++ FG PVML++ C L G +
Sbjct: 93 NEARIRDLTYASPLFIDVIKETVSELGVVDKHKYSRVPFGSLPVMLRSSYCVLHGLGDKD 152
Query: 93 LVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCV 152
L+ L E + GGYFI+NG E+V I+ ++ + V + + YT A IR V
Sbjct: 153 LIDLGECPYDQGGYFIVNGSEKV----IVAQERMASNTVYVFKKAQPATYTHYAE-IRSV 207
Query: 153 ----RKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCC 208
++ S++++KL G++R+ L ++ +P+ ++ +AL +D EI +H+
Sbjct: 208 PEKSSRNPSTLSMKLCRS-PGAIRVSLPLVKQD--IPLFVLYRALGFLSDKEIIDHI--L 262
Query: 209 Y---DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSE 265
Y DE ++ K ++ V VQD ++ L +IG+ PV G E
Sbjct: 263 YEDDDEMFELLKESIEEGTV----------VQDQNVA-----LDYIGKRSAPV--GTPQE 305
Query: 266 SYYAVAETVIRDYIFVHLNDN----NDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEI 321
+A ++ + H+ K + +++Q+L + D+ D + +
Sbjct: 306 KRITIARDLLAKEVLPHIGTQEFCETKKAYFIGYIVQRLLLVALGRRNPDDRDHYGKKRM 365
Query: 322 LLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTS 381
L G L+ + + + +Q IEN + FN+A K + I
Sbjct: 366 DLSGPLLASLFRTLFKKLCADTTRHMQKCIENGRE----FNIALGLK------ASIITQG 415
Query: 382 IETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKL 441
L TG Q +Q RAG R NF+ +S R V+ G + + R+L
Sbjct: 416 FRYALATGNWGDQAKA-MQTRAGVAQVLNRYNFVSTLSHLRRVNTPIEKEG-KLAAPRQL 473
Query: 442 LPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGM 501
WG +CP TP+G+ CGL+ +++ + S S G + +F + GV
Sbjct: 474 HNTHWGMVCPAETPEGQACGLVKNLSLMAYI-SVGSSSGPLIEFLEE--------CGVES 524
Query: 502 IPSLPKLVKSGPPAVLSVLLDGRVVGV--IPSSEIEKVVAHLRRLKVSAASVIPDDLEVG 559
+ + L S V ++G VG+ P I+ + R L++ I D+
Sbjct: 525 LEEISTLQLS---TATKVFVNGVWVGIHSDPVYLIKSLKLLRRSLEIDKEVSIVRDIREK 581
Query: 560 YVPLSLGGAYPGLYLFT-SPPKFVRPVRNI-SLPSEESQNIELIGPFEQVFMEIR----- 612
+ + P L K V + +I L E + LIG F+++
Sbjct: 582 EIRIQSDAGRPCRPLMVVRDNKLVITIEDIRKLRRGEIKWDNLIGEGFIEFLDVEEEEMS 641
Query: 613 ------------CPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQC 660
C + D TH EIHP +L + A+ P+ DHNQSPRN YQ
Sbjct: 642 MIAMSTKVLNDECKNSSD----VKISYTHCEIHPALILGICASTIPFPDHNQSPRNTYQS 697
Query: 661 QMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYT 720
M KQ MG R D L PQ P+V T + E P+G NA+VA+ Y+
Sbjct: 698 AMGKQAMGIYATNFLLRMDTLSNILFYPQKPLVTTKSMEYLRFKELPSGQNALVAIACYS 757
Query: 721 GYDMEDAMILNKSSVDRGMCHGQIYQTETID-------LSDDGNKVDRGQKLFRRNKDAK 773
GY+ ED++I+N+S++DRG+ Y+T T ++++ K +RG L +N +
Sbjct: 758 GYNQEDSIIMNQSAIDRGLFRSFFYRTYTDQESMSRPGVNEEFCKPNRGSVLRMKNLN-- 815
Query: 774 SLHSVIDSDGL-----------PYVGQMIHPGEPYCSIYDKTTNSWRTNSR--KGSESVF 820
++ +D DGL +G++ +P S + ++ +S + +E+
Sbjct: 816 --YNKLDEDGLISPGVRVTGDDVLIGKITPILDPERSTKEAPVYVYKDSSTAMRRTETGI 873
Query: 821 VDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTG 880
VD V V K+ + ++ R R P +GDKF+SRH QKG DMPF+ G
Sbjct: 874 VDTVIVTNKDGYKF---SKVKIRSGRIPQMGDKFASRHAQKGTIGITLRQEDMPFTS-DG 929
Query: 881 MRPDLIINPHAFPSRMTIAMLLESVAAK 908
+ PD+IINPHA PSRMTI L+E + K
Sbjct: 930 IVPDIIINPHAIPSRMTIGHLIECLLGK 957
>gi|324120640|dbj|BAJ78711.1| RNA polymerase II second largest subunit [Blattella nipponica]
Length = 1175
Score = 242 bits (617), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 247/944 (26%), Positives = 408/944 (43%), Gaps = 132/944 (13%)
Query: 34 MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVR---ERFNFGQFPVMLKTRRCHLQGADS 90
M + R ++Y+ L D+ + G + ++ G+ P+ML++ C L G
Sbjct: 109 MPNEARLRNLTYSAPLYVDITKTIVKDGEDPIETQHQKTFIGKIPIMLRSTYCLLSGLTD 168
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
+ L L E + GGYFI+NG E+V +I ++ ++ S +D + Y KA +
Sbjct: 169 RDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFSMKDGKFAY--KAEIRS 223
Query: 151 CVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
C+ + + TL + + G + G+ + +P+ IV +AL D +
Sbjct: 224 CLEHSSRPTSTLWVNMMARGGQSIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRD 283
Query: 201 IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
I H+ +D+ P + E VK L E + + L IG +
Sbjct: 284 ILEHIIYDFDD-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGA--RGARP 328
Query: 261 GLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
G+ + A+ +++ + H+ ++ K L +M+ +L D+ D
Sbjct: 329 GVTKDRRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 388
Query: 317 QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
N+ + L G L+ + ++ +++ + Q I + GK F+ LA IK +K
Sbjct: 389 GNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFI-DRGKDFN-LELA-IK-------TK 438
Query: 377 QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
I + L TG Q L RAG + RL F +S R V+ G +
Sbjct: 439 IITDGLRYSLATGNWGDQKKAHL-ARAGVSQVLNRLTFASTLSHLRRVNSPIGRDG-KLA 496
Query: 437 SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
R+L WG +CP TP+G GL+ ++ ++ + IL L
Sbjct: 497 KPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYIS-----------VGSQPSPILEFL 545
Query: 497 IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAAS 550
M +L ++ S + ++G VG+ + E+++A LR+L+ VS S
Sbjct: 546 EEWSM-ENLEEIAPSAIADATKIFVNGCWVGI--HRDPEQLMATLRKLRRQMDIIVSEVS 602
Query: 551 VIPD--DLEVGYVPLSLGGAYPGLYLFTSPPKFVRPV------------RNISLPSEESQ 596
+I D D E+ ++T + RP+ R++ + E+
Sbjct: 603 MIRDIRDREI--------------RIYTDAGRICRPLLIVEGGTLLLKKRHVDMLKEKEY 648
Query: 597 N------------IELIGPF-EQVFMEIRCPDGGDGGRRNAF--PATHEEIHPTGMLSVV 641
N +E I E+ M P+ + A+ TH EIHP +L V
Sbjct: 649 NNYGWQVLVASGVVEYIDTLEEETVMIAMSPEDLRVDKEYAYCQTYTHCEIHPAMILGVC 708
Query: 642 ANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKY 701
A++ P+ DHNQSPRN YQ M KQ MG + R D + L P P+V T +
Sbjct: 709 ASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYL 768
Query: 702 GIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT-ETIDLSDDGNKVD 760
E P G N+IVA+L YTGY+ ED++I+N S+V+RG +++ + + G++ +
Sbjct: 769 RFRELPAGINSIVAILCYTGYNQEDSVIMNASAVERGFFRSVFFRSYKDAESKRIGDQEE 828
Query: 761 RGQKLFRRNKDA--KSLHSVIDSDGLPYVGQMIHPGE----PYCSIYDKTTNSWRTNSR- 813
+ +K R+ +L+ +D DG+ G + + ++ D T R
Sbjct: 829 QFEKPTRQTCQGMRNALYDKLDDDGIISPGIRVSGDDVVIGKTITLPDNDDELEGTTKRF 888
Query: 814 ---------KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVC 864
+ SE+ VD V + + NS+ + IR R R P IGDKF+SRHGQKG C
Sbjct: 889 TKRDASTFLRNSETGIVDQVMLTL-NSEGY-KFCKIRVRSVRIPQIGDKFASRHGQKGTC 946
Query: 865 SQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
+ DMPF+ G+ PD+IINPHA PSRMTI L+E + K
Sbjct: 947 GIQYRQEDMPFT-CEGLTPDIIINPHAIPSRMTIGHLIECLQGK 989
>gi|405953099|gb|EKC20822.1| DNA-directed RNA polymerase III subunit RPC2 [Crassostrea gigas]
Length = 1060
Score = 241 bits (616), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 235/888 (26%), Positives = 378/888 (42%), Gaps = 129/888 (14%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR ++Y+ + D+E Y +VR G+ P+ML++ C L G ++ L
Sbjct: 101 CRLRDMTYSAPITVDIE--YTRGNQRIVRNNLPIGRMPIMLRSSNCVLNGKSPAEMAKLN 158
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
E + GGYFI G E+V +++ +Q M+ + R RK ++
Sbjct: 159 ECPMDPGGYFITRGTEKV---ILIQEQLSKNRMIVDTDTGRNRSIECSVTSSTHERKSKT 215
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYL--LPVGIVLKALVDTNDLEIFNHLTCCYDEKYKK 215
V+ K F+L+ + +PV I KA+ D EI
Sbjct: 216 YVSTK---------HEKFYLRHNTFTEDIPVAIAFKAMGMECDQEIVQ------------ 254
Query: 216 EKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHF-QPVIDGLQSESYYAVAETV 274
++ +I+ + L R Q L++IG+ Q + G ++ A
Sbjct: 255 --------MIGSEEEILTSVAPCLEECHRAQALKYIGQRVRQRRVWGGSKKTKVDEAREA 306
Query: 275 IRDYIFVHLNDNNDKFNL----LIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITI 330
+ D + H+ F L L M++++ D+ D N+ + L G L+++
Sbjct: 307 LHDIVLAHVPVVEWNFKLKAAYLALMVRRVILAKGEQVKGDDRDYYGNKRLELAGQLLSL 366
Query: 331 YLKEKLEDWLRKGKKLIQDEI-ENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTG 389
++ + + + K++ I + +FD I K M ++ QI + + TG
Sbjct: 367 LFEDLFKKFNSELKRIADMTIPKPRAAQFD------IIKHMRQD---QITNGLVNAISTG 417
Query: 390 RLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFL 449
+ + +RAG T RL+F+ + + A
Sbjct: 418 NWSIKRFK--MERAGVTQVLSRLSFISALGMMTRISSQA--------------------- 454
Query: 450 CPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLV 509
CGL+ ++ + + + IR M +++L G M S
Sbjct: 455 ----------CGLVKNLALMTHITTDMEEDPIIRLAFNMGVEDIQLLSGEEMTSS----- 499
Query: 510 KSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAY 569
V V L+G ++GVI + +K+V R ++ S P + PL
Sbjct: 500 -----RVYLVFLNGNILGVI--RDHKKLVRTFRLMRRSGYISEPYIIVQKGQPLVKQRHI 552
Query: 570 PGLYL-FTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPAT 628
L F S F++ L E +N +I +E G R T
Sbjct: 553 EELTQGFRSFDDFLKEGLVEYLDVNE-ENDCMISLYE------------SGITRET---T 596
Query: 629 HEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTP 688
H EI P +L V A L PY HNQSPRN YQC M KQ MG + R D +Y L P
Sbjct: 597 HLEIEPFTILGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLCYP 656
Query: 689 QTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTE 748
Q P+V++ T D+ P G NA VAV++++GYD+EDA++LNK+S+DRG +Y+ +
Sbjct: 657 QAPLVKSKTIELIHFDKLPAGQNATVAVMSFSGYDIEDALVLNKASLDRGFGRCLVYRKQ 716
Query: 749 TIDLSDDGNKVDRGQKLFRRNKDAKS-----LHSVIDSDGLPYVGQMIHPGEPYCSIYDK 803
L N+ K+ DA + H +DSDG+ G+ + + + +
Sbjct: 717 ACTLKRYTNQ--SFDKVMGPMVDASTHKPIWKHEALDSDGICSPGERMENRQVLVNKWMP 774
Query: 804 TTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKA---NIRFRHTRNPIIGDKFSSRHGQ 860
T KG+E+ +++ V + S N P++A I R TR P IGDKFSSRHGQ
Sbjct: 775 TVTMNPIQQYKGAEACYIEKVLI----SSN-PEEAFLIKILQRQTRRPEIGDKFSSRHGQ 829
Query: 861 KGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
KGVC + P DMPF+ + G+ PD+I+NPH +PSRMT+ L+E + +K
Sbjct: 830 KGVCGLIVPQEDMPFTDL-GICPDIIMNPHGYPSRMTVGKLMELLGSK 876
>gi|324120606|dbj|BAJ78694.1| RNA polymerase II second largest subunit [Isolepisma japonica]
Length = 1176
Score = 241 bits (616), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 242/931 (25%), Positives = 400/931 (42%), Gaps = 106/931 (11%)
Query: 34 MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVR---ERFNFGQFPVMLKTRRCHLQGADS 90
M + R ++Y+ L D+ + G + ++ G+ P+ML++ C L G
Sbjct: 109 MPNEARLRNLTYSAPLYVDITKTVIKEGEDPIETQHQKTFIGKIPIMLRSTYCLLNGLTD 168
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
+ L L E + GGYFI+NG E+V +I ++ ++ S +D + Y KA +
Sbjct: 169 RDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFSMKDGKYAY--KAEIRS 223
Query: 151 CVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
C+ + + TL + + G + G+ + +P+ IV +AL D +
Sbjct: 224 CLEHSSRPTSTLWVNMMARGGQSIKKSAIGQRIVAILPYIKQEIPIMIVFRALGFVADRD 283
Query: 201 IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
I H+ +D+ P + E VK L E + + L IG +
Sbjct: 284 ILEHIIYDFDD-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGA--RGARP 328
Query: 261 GLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
G+ E A +++ + H+ ++ K L +M+ +L D+ D
Sbjct: 329 GVTKEKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 388
Query: 317 QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
N+ + L G L+ + ++ +++ + Q I + GK F+ LA IK +K
Sbjct: 389 GNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFI-DRGKDFNL-ELA-IK-------TK 438
Query: 377 QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
I ++ L TG Q L RAG + RL F +S R V+ G +
Sbjct: 439 IITDGLKYSLATGNWGDQKKAHLA-RAGVSQVLNRLTFASTLSHLRRVNSPIGRDG-KLA 496
Query: 437 SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
R+L WG +CP TP+G GL+ ++ ++ + IL L
Sbjct: 497 KPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYIS-----------VGSQPSPILEFL 545
Query: 497 IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAAS 550
M +L ++ S + ++G VG+ + E+++A LR+L+ VS S
Sbjct: 546 EEWSM-ENLEEIAPSAIADATKIFVNGCWVGI--HRDPEQLMATLRKLRRQMDIIVSEVS 602
Query: 551 VIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN------------I 598
++ D + + G L + + R+I + E N +
Sbjct: 603 MVRDIRDREIRIYTDAGRICRPLLIVDNGRLLLKKRHIDMLKEREYNNYGWQVLVASGVV 662
Query: 599 ELIGPFEQ-VFMEIRCPDGGDGGRRNAFPAT--HEEIHPTGMLSVVANLTPYSDHNQSPR 655
E I E+ M P+ + A+ T H EIHP +L V A++ P+ DHNQSPR
Sbjct: 663 EYIDTLEEETVMIAMSPEDLRQDKEYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPR 722
Query: 656 NMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVA 715
N YQ M KQ MG + R D + L P P+V T + E P G N+IVA
Sbjct: 723 NTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVA 782
Query: 716 VLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT----ETIDLSDDGNKVDRGQKLFRRNKD 771
+ YTGY+ ED++I+N S+V+RG +++ E+ + D + ++ + +
Sbjct: 783 IACYTGYNQEDSVIMNASAVERGFFRSVFFRSYKDAESKRICDQEEQFEKPTRTTCQGM- 841
Query: 772 AKSLHSVIDSDGLPYVGQMIHPGE----PYCSIYDKTTNSWRTNSR----------KGSE 817
+++ +D DG+ G + + ++ D T R + SE
Sbjct: 842 RNAIYDKLDDDGIIAPGIRVSGDDVVIGKTITLPDNDDELEGTTKRYTKRDASTFLRNSE 901
Query: 818 SVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSG 877
+ VD V + + NS+ + IR R R P IGDKF+SRHGQKG C + DMPF+
Sbjct: 902 TGIVDQVMITL-NSEGY-KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFT- 958
Query: 878 VTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
G+ PD+IINPHA PSRMTI L+E + K
Sbjct: 959 CEGLTPDIIINPHAIPSRMTIGHLIECLQGK 989
>gi|324120642|dbj|BAJ78712.1| RNA polymerase II second largest subunit [Reticulitermes speratus]
Length = 1150
Score = 241 bits (616), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 247/944 (26%), Positives = 406/944 (43%), Gaps = 132/944 (13%)
Query: 34 MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVR---ERFNFGQFPVMLKTRRCHLQGADS 90
M + R ++Y+ L D+ + G + ++ G+ P+ML++ C L G
Sbjct: 84 MPNEARLRNLTYSAPLYVDITKTIVKDGEDPIETQHQKTFIGKIPIMLRSTYCLLNGLTD 143
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
+ L L E + GGYFI+NG E+V +I ++ ++ S +D + + KA +
Sbjct: 144 RDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFSMKDGKFAF--KAEIRS 198
Query: 151 CVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
C+ + + TL + + G + G+ + +P+ IV +AL D +
Sbjct: 199 CLEHSSRPTSTLWVNMMARGGQSIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRD 258
Query: 201 IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
I H+ +D+ P + E VK L E + + L IG +
Sbjct: 259 ILEHIIYDFDD-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGA--RGARP 303
Query: 261 GLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
G+ + A +++ + H+ ++ K L +M+ +L D+ D
Sbjct: 304 GVTKDKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 363
Query: 317 QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
N+ + L G L+ + ++ +++ + Q I + GK F+ LA IK +K
Sbjct: 364 GNKRLDLAGPLLAFLFRGLFKNLMKEVRIYAQKFI-DRGKDFNL-ELA-IK-------TK 413
Query: 377 QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
I + L TG Q Q RAG + RL F +S R V+ G +
Sbjct: 414 IITDGLRYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRVNSPIGRDG-KLA 471
Query: 437 SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
R+L WG +CP TP+G GL+ ++ ++ + IL L
Sbjct: 472 KPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYIS-----------VGSQPSPILEFL 520
Query: 497 IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAAS 550
M +L ++ S + ++G VG+ + E+++A LR+L+ VS S
Sbjct: 521 EEWSM-ENLEEIAPSAIADATKIFVNGCWVGI--HRDPEQLMATLRKLRRQMDIIVSEVS 577
Query: 551 VIPD--DLEVGYVPLSLGGAYPGLYLFTSPPKFVRPV------------RNISLPSEESQ 596
+I D D E+ ++T + RP+ R+I + E
Sbjct: 578 MIRDIRDREI--------------RIYTDAGRICRPLLIVEGGNLLLKKRHIDMLKEREY 623
Query: 597 N------------IELIGPFEQ-VFMEIRCPDGGDGGRRNAFPAT--HEEIHPTGMLSVV 641
N +E I E+ M PD + A+ T H EIHP +L V
Sbjct: 624 NNYGWQVLVASGVVEYIDTLEEETVMIAMSPDDLRQDKEYAYCTTYTHCEIHPAMILGVC 683
Query: 642 ANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKY 701
A++ P+ DHNQSPRN YQ M KQ MG + R D + L P P+V T +
Sbjct: 684 ASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYL 743
Query: 702 GIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT-ETIDLSDDGNKVD 760
E P G N+IVA+L YTGY+ ED++I+N S+V+RG ++ + + G++ +
Sbjct: 744 RFRELPAGINSIVAILCYTGYNQEDSVIMNASAVERGFFRSVFFRAYKDAESKRIGDQEE 803
Query: 761 RGQKLFRRNKDA--KSLHSVIDSDGL-----------PYVGQMIHPGEPYCSIYDKTTNS 807
+ +K R +L+ +D DG+ +G+ I + + T
Sbjct: 804 QFEKPTRTTCQGMRNALYDKLDDDGIISPGIRVSGDDVVIGKTITLPDTEDELEGTTKRF 863
Query: 808 WRTNSR---KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVC 864
+ ++ + SE+ VD V + + NS+ + IR R R P IGDKF+SRHGQKG C
Sbjct: 864 TKRDASTFLRNSETGIVDQVMLTL-NSEGY-KFCKIRVRSVRIPQIGDKFASRHGQKGTC 921
Query: 865 SQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
+ DMPF+ G+ PD+IINPHA PSRMTI L+E + K
Sbjct: 922 GIQYRQEDMPFT-CEGLTPDIIINPHAIPSRMTIGHLIECLQGK 964
>gi|154342160|ref|XP_001567028.1| putative DNA-directed RNA polymerase II subunit 2 [Leishmania
braziliensis MHOM/BR/75/M2904]
gi|134064357|emb|CAM42447.1| putative DNA-directed RNA polymerase II subunit 2 [Leishmania
braziliensis MHOM/BR/75/M2904]
Length = 1185
Score = 241 bits (616), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 246/945 (26%), Positives = 412/945 (43%), Gaps = 145/945 (15%)
Query: 36 DHCRQAKISY--TGKLMADVEFQYLDAGSP--VVRERFNFGQFPVMLKTRRCHLQGADSQ 91
+ CR ++Y ++ VE + A +P G+ P+MLK+ RC+L G D
Sbjct: 127 NECRLRDMTYDAQAQVTLGVELYHPHADTPHDTFLRNVELGRIPIMLKSMRCNLSGKDED 186
Query: 92 KLVSLKEEAAEMGGYFILNGLERVF------------------------RSVILPKQNYP 127
+L L E + GGYF++NG E+V +S++ N P
Sbjct: 187 ELPRLNECPHDQGGYFVINGTEKVLIAQERQAANHVYTFSRQKGLLCEVKSIVEGSLNKP 246
Query: 128 MSM-VRSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPV 186
++ + +R+R G ++++ R + D+ T+ L+ L R + KE L
Sbjct: 247 RTLQIIMPYRNRGPGSGFESLMCRVAQMDE---TIPLFVLF----RAMDMVADKEIL--- 296
Query: 187 GIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQ 246
V+ L DT LE+ GS +++ L + TR +
Sbjct: 297 QTVVPDLKDTAMLELLR-----------------GS----------MSDASTLQIFTREE 329
Query: 247 CLQHIGEHF--QPVIDGLQSESYYAVAETVIRDYIFVHL----NDNNDKFNLLIFMLQKL 300
L +IG Q + LQ E AE+++ + H+ + N K + +M+ KL
Sbjct: 330 ALGYIGRRLGKQDAMANLQRE-----AESLLMRDLLPHMGTDPSANRTKCLYMGYMVHKL 384
Query: 301 FSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDF 360
+ + D L ++ I + G L+T+ L+ L ++ K +QD N F F
Sbjct: 385 LLVALGRHEETDRDFLGHKRIDVAGTLLTVQLQTFLAQVRKEMIKTLQDHAANPRGVFSF 444
Query: 361 FNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISF 420
+ + + V + + + T LKTG + T G RL + +S
Sbjct: 445 GRVIHSRLVTD-GLRRCLATGNFGDLKTGNIKT----------GVAQTLNRLTYSSSLSN 493
Query: 421 FRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRG 480
R + + A + T R L WG++CPV TP+G GLL ++ C + SRG
Sbjct: 494 LRRIQNPIA-ASSKATRPRNLHCTQWGYICPVETPEGGSIGLLKNVALMCLM-----SRG 547
Query: 481 NIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAH 540
D +++ ++ + G I L + V V ++G ++GV E+++
Sbjct: 548 T--DHAEVVQAVQARIDGFRTI----GLEDTADVRVARVFVNGTMIGV--DRNPERLLHD 599
Query: 541 LRRLKVSA-----ASVIPDDLEVGYVPLSLGGAY--PGLYLFTSPPKFVRPVRNISLPSE 593
LR + + S++ D + S GG P + K + L SE
Sbjct: 600 LRTRRRNGELSNEVSIVRDIRDREIRVFSDGGRCLRPLFVVENCHLKLRKSSMRDLLVSE 659
Query: 594 ES---QNIELIGPFEQVFMEIRCPDGGDGGRRNAFPA--------THEEIHPTGMLSVVA 642
++ ++I ++ ++E+ + D P+ +H E+ P+ +L + A
Sbjct: 660 KAGGKKSISWNTVLKKGYVELIDCEEEDSLLVAMTPSEVEKNYYYSHCEMDPSMILGICA 719
Query: 643 NLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYG 702
++ PY +HNQSPRN YQ M KQ MG R D + L PQ P+VRT T
Sbjct: 720 SIIPYPNHNQSPRNTYQSAMGKQAMGIYASNFNMRMDTTAHVLFYPQKPLVRTKAMTYMH 779
Query: 703 IDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRG 762
++ P G NA+VA+ Y+GY+ ED++I+++S+V+RG ++ + ++ K D
Sbjct: 780 SNDLPAGHNAVVAISCYSGYNQEDSIIMSRSAVERGFFRSAFWR--SFKAKEERQKRDAL 837
Query: 763 QKLFRRNKDA----KSLHSVIDSDGLPYVGQMIHPGE---------PYCSIYDKTTNSWR 809
+ N++ ++ +S +D+DGL G + G+ P + TT + +
Sbjct: 838 ETFENPNREVCRVKRADYSKLDTDGLIKPGMRVLGGDVVVGKTIPLPEADLDKLTTGNTK 897
Query: 810 TNSRKGS------ESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGV 863
R S E V+ V + M +S A ++ R + P IGDKF SRHGQKG
Sbjct: 898 ITKRDASITSRTTEKGVVEKVMLTMNSSDRF---AKVKIRTIKIPNIGDKFCSRHGQKGT 954
Query: 864 CSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
+ DMPF+ G+ PDLIINPHA PSRMT+A L+E++A K
Sbjct: 955 NGIQFRQEDMPFNR-DGVVPDLIINPHAIPSRMTVAHLIETLAGK 998
>gi|324120610|dbj|BAJ78696.1| RNA polymerase II second largest subunit [Mnais pruinosa pruinosa]
Length = 1175
Score = 241 bits (616), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 249/947 (26%), Positives = 405/947 (42%), Gaps = 138/947 (14%)
Query: 34 MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVR---ERFNFGQFPVMLKTRRCHLQGADS 90
M + R ++Y+ L D+ G + ++ G+ P+ML++ C L G
Sbjct: 109 MPNEARLRNLTYSAPLYVDITKTVAKEGEEPIETQHQKTFIGKIPIMLRSTYCLLNGLTD 168
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
+ L L E + GGYFI+NG E+V +I ++ ++ S +D + + KA +
Sbjct: 169 RDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFSMKDGKFAF--KAEIRS 223
Query: 151 CVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
C+ + + TL + + G + G+ + +P+ IV +AL D +
Sbjct: 224 CLEHSSRPTSTLWVNMMARGGQSIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRD 283
Query: 201 IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
I H+ +D+ P + E VK L E + + L IG +
Sbjct: 284 ILEHIIYDFDD-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGA--RGARP 328
Query: 261 GLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
G+ E A +++ + H+ ++ K L +M+ +L D+ D
Sbjct: 329 GVTKEKRVKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 388
Query: 317 QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
N+ + L G L+ + ++ +++ + Q I + GK F+ LA IK +K
Sbjct: 389 GNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFI-DRGKDFN-LELA-IK-------TK 438
Query: 377 QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
I + L TG Q Q RAG + RL F +S R V+ G +
Sbjct: 439 IITDGLRYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRVNSPIGRDG-KLA 496
Query: 437 SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
R+L WG +CP TP+G GL+ ++ Y S G+ + IL L
Sbjct: 497 KPRQLHNTLWGMICPAETPEGAAVGLVKNLALMA-----YISVGS------QPSPILEFL 545
Query: 497 IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAAS 550
M +L ++ S + ++G VG+ + E+++A LR+L+ VS S
Sbjct: 546 EEWSM-ENLEEIAPSAIADATKIFVNGCWVGI--HRDPEQLMATLRKLRRQMDIIVSEVS 602
Query: 551 VIPD--DLEVGYVPLSLGGAYPGLYLFTSPPKFVRPV------------RNISLPSEESQ 596
+I D D E+ ++T + RP+ R+I + E
Sbjct: 603 MIRDIRDREI--------------RIYTDAGRICRPLLIVENGTLLLKKRHIEMLKEREY 648
Query: 597 N------------IELIGPF-EQVFMEIRCPDGGDGGRRNAFPA--THEEIHPTGMLSVV 641
N +E I E+ M P+ + A+ TH EIHP +L V
Sbjct: 649 NNYGWQVLVASGVVEYIDTLEEETVMIAMSPEDLRQEKEYAYCTTYTHCEIHPAMILGVC 708
Query: 642 ANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKY 701
A++ P+ DHNQSPRN YQ M KQ MG + R D + L P P+V T +
Sbjct: 709 ASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYL 768
Query: 702 GIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDR 761
E P G N++VA+ YTGY+ ED++I+N S+V+RG Y++ + +V
Sbjct: 769 RFRELPAGINSVVAIACYTGYNQEDSVIMNASAVERGFFRSVFYRSYK---DQESKRVGD 825
Query: 762 GQKLFRRNKDA------KSLHSVIDSDGL-----------PYVGQMIHPGEPYCSIYDKT 804
++ F + A +++ +D DG+ +G+ I E + T
Sbjct: 826 QEEQFEKPTRATCQGMRNAIYDKLDDDGIIAPGVRVSGDDVVIGKTITLPENDDELEGTT 885
Query: 805 TNSWRTNSR---KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQK 861
+ ++ + SE+ VD V + + NS+ + IR R R P IGDKF+SRHGQK
Sbjct: 886 KRFTKRDASTFLRNSETGIVDQVMITL-NSEGY-KFCKIRVRSVRIPQIGDKFASRHGQK 943
Query: 862 GVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
G C + DMPF+ G+ PD+IINPHA PSRMTI L+E + K
Sbjct: 944 GTCGIQYRQEDMPFT-CEGLTPDIIINPHAIPSRMTIGHLIECLQGK 989
>gi|324120608|dbj|BAJ78695.1| RNA polymerase II second largest subunit [Epiophlebia superstes]
Length = 1175
Score = 241 bits (615), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 250/952 (26%), Positives = 401/952 (42%), Gaps = 148/952 (15%)
Query: 34 MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVR---ERFNFGQFPVMLKTRRCHLQGADS 90
M + R ++Y+ L D+ G + ++ G+ P+ML++ C L G
Sbjct: 109 MPNEARLRNLTYSAPLYVDITKTVAKEGEEPIETQHQKTFIGKIPIMLRSTYCLLNGLTD 168
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVF--RSVILPKQNYPMSMVRSSFRDRREGYTDKAVV 148
+ L L E + GGYFI+NG E+V + + Y SM F + E
Sbjct: 169 RDLTELNECPLDPGGYFIINGSEKVLIAQEKMATNTVYVFSMKDGKFAFKAE-------- 220
Query: 149 IRCVRKDQSSVTLKLYYLLNGSVRLGFWLQ----GKEYL---------LPVGIVLKALVD 195
IR + S T L+ +N R G ++ G+ + +P+ IV +AL
Sbjct: 221 IRSCLEHSSRPTSTLW--VNMMARCGQSIKKSAIGQRIIAILPYIKQEIPIMIVFRALGF 278
Query: 196 TNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHF 255
D +I H+ +D+ P + E VK L E + + L IG
Sbjct: 279 VADRDILEHIIYDFDD-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGA-- 323
Query: 256 QPVIDGLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSD 311
+ G+ E A +++ + H+ ++ K L +M+ +L D
Sbjct: 324 RGARPGVTKEKRVKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELD 383
Query: 312 NPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVME 371
+ D N+ + L G L+ + ++ +++ + Q I + GK F+ LA IK
Sbjct: 384 DRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFI-DRGKDFN-LELA-IK---- 436
Query: 372 KNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFA 431
+K I + L TG Q Q RAG + RL F +S R V+
Sbjct: 437 ---TKIITDGLRYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRVNSPIGRD 492
Query: 432 GLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTS 491
G + R+L WG +CP TP+G GL+ ++ ++ +
Sbjct: 493 G-KLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYIS-----------VGSQPSP 540
Query: 492 ILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------ 545
IL L M +L ++ S + ++G VG+ + E+++A LR+L+
Sbjct: 541 ILEFLEEWSM-ENLEEIAPSAIADATKIFVNGCWVGI--HRDPEQLMATLRKLRRQMDII 597
Query: 546 VSAASVIPD--DLEVGYVPLSLGGAYPGLYLFTSPPKFVRPV------------RNISLP 591
VS S+I D D E+ ++T + RP+ R+I +
Sbjct: 598 VSEVSMIRDIRDREI--------------RIYTDAGRICRPLLIVENGTLLLKKRHIEML 643
Query: 592 SEESQN------------IELIGPF-EQVFMEIRCPDGGDGGRRNAFPA--THEEIHPTG 636
E N +E I E+ M P+ + A+ + TH EIHP
Sbjct: 644 KEREYNNYGWQVLVASGVVEYIDTLEEETVMIAMSPEDLRQEKEYAYCSTYTHCEIHPAM 703
Query: 637 MLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTN 696
+L V A++ P+ DHNQSPRN YQ M KQ MG + R D + L P P+V T
Sbjct: 704 ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTR 763
Query: 697 TYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDG 756
+ E P G N++VA+ YTGY+ ED++I+N S+V+RG Y++ +
Sbjct: 764 SMEYLRFRELPAGINSVVAIACYTGYNQEDSVIMNASAVERGFFRSVFYRSYK---DQES 820
Query: 757 NKVDRGQKLFRRNKDA------KSLHSVIDSDGL-----------PYVGQMIHPGEPYCS 799
+V ++ F + A +++ +D DG+ +G+ I E
Sbjct: 821 KRVGDQEEQFEKPTRATCQGMRNAIYDKLDDDGIIAPGVRVSGDDVVIGKTITLPENDDE 880
Query: 800 IYDKTTNSWRTNSR---KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSS 856
+ T + ++ + SE+ VD V + + NS+ + IR R R P IGDKF+S
Sbjct: 881 LEGTTKRFTKRDASTFLRNSETGIVDQVMITL-NSEGY-KFCKIRVRSVRIPQIGDKFAS 938
Query: 857 RHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
RHGQKG C + DMPF+ G+ PD+IINPHA PSRMTI L+E + K
Sbjct: 939 RHGQKGTCGIQYRQEDMPFT-CEGLTPDIIINPHAIPSRMTIGHLIECLQGK 989
>gi|324120674|dbj|BAJ78728.1| RNA polymerase II second largest subunit [Papilio polytes]
Length = 1176
Score = 241 bits (615), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 249/944 (26%), Positives = 403/944 (42%), Gaps = 132/944 (13%)
Query: 34 MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVR---ERFNFGQFPVMLKTRRCHLQGADS 90
M + R ++Y+ L D+ + + ++ G+ P+ML++ C L
Sbjct: 109 MPNEARLRNLTYSAPLYVDITKTIVKENEEPIETQHQKIFIGKIPIMLRSTYCLLSNLTD 168
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
+ L L E + GGYFI+NG E+V +I ++ ++ S +D + Y K +
Sbjct: 169 RDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFSMKDGKYAY--KTEIRS 223
Query: 151 CVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
C+ + + TL + + G + G+ + +P+ IV +AL D +
Sbjct: 224 CLEHSSRPTSTLWVNMMARGGQSIKKSAIGQRIIAIVPYIKQEIPIMIVFRALGFVADRD 283
Query: 201 IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
I H+ +D+ P + E VK L E + + L IG +
Sbjct: 284 ILEHIIYDFDD-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGA--RGARP 328
Query: 261 GLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
G+ E A +++ + H+ ++ K L +M+ +L D+ D
Sbjct: 329 GVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 388
Query: 317 QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
N+ + L G L+ + ++ L++ + Q I + GK F+ LA IK +K
Sbjct: 389 GNKRLDLAGPLLAFLFRGLFKNLLKEVRMYAQKFI-DRGKDFNL-ELA-IK-------TK 438
Query: 377 QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
I + L TG Q Q RAG + RL F +S R V+ G +
Sbjct: 439 IITDGLRYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRVNSPIGRDG-KLA 496
Query: 437 SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
R+L WG +CP TP+G GL+ ++ ++ + IL L
Sbjct: 497 KPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYIS-----------VGSQPSPILEFL 545
Query: 497 IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAAS 550
M +L ++ S + ++G VG+ + E+++A LR+L+ VS S
Sbjct: 546 EEWSM-ENLEEIAPSAIADATKIFVNGCWVGI--HRDPEQLMATLRKLRRQMDIIVSEVS 602
Query: 551 VIPD--DLEVGYVPLSLGGAYPGLYLFTSPPKFVRPV------------RNISLPSEESQ 596
+I D D E+ ++T + RP+ ++I E
Sbjct: 603 MIRDIRDREI--------------RIYTDAGRICRPLLIVENGALLLKKKHIDHLKERDY 648
Query: 597 N------------IELIGPFEQ-VFMEIRCPDGGDGGRRNAFPAT--HEEIHPTGMLSVV 641
N +E I E+ M PD + A+ +T H EIHP +L V
Sbjct: 649 NNYGWQNLVASGVVEYIDTLEEETVMIAMSPDDLAQVKEYAYCSTYTHCEIHPAMILGVC 708
Query: 642 ANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKY 701
A++ P+ DHNQSPRN YQ M KQ MG + R D + L P P+V T +
Sbjct: 709 ASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYL 768
Query: 702 GIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDD-GNKVD 760
E P G N+IVA+L YTGY+ ED++ILN S+V+RG Y++ S G++ +
Sbjct: 769 RFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDSESKRLGDQEE 828
Query: 761 RGQKLFRRNKDA--KSLHSVIDSDGL-----------PYVGQMIHPGEPYCSIYDKTTNS 807
+ +K R+ +L+ +D DG+ +G+ I E + T
Sbjct: 829 QFEKPTRQTCQGMRNALYDKLDDDGIIAPGIRVSGDDVVIGKTITLPENDDELEGTTRRY 888
Query: 808 WRTNSR---KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVC 864
+ ++ + SE+ VD V V + ++ + IR R R P IGDKF+SRHGQKG C
Sbjct: 889 TKRDASTFLRNSETGIVDQVMVTL--NREGYKFCKIRVRSVRIPQIGDKFASRHGQKGTC 946
Query: 865 SQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
+ DMPF+ G+ PD+IINPHA PSRMTI L+E + K
Sbjct: 947 GIQYRQEDMPFT-CEGITPDIIINPHAIPSRMTIGHLIECIQGK 989
>gi|297673503|ref|XP_002814800.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 1
[Pongo abelii]
gi|410038417|ref|XP_003950400.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Pan
troglodytes]
Length = 1167
Score = 241 bits (615), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 244/931 (26%), Positives = 399/931 (42%), Gaps = 107/931 (11%)
Query: 34 MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFN---FGQFPVMLKTRRCHLQGADS 90
M + R ++Y+ L D+ + G ++ + G+ P+ML++ C L G
Sbjct: 102 MPNEARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTD 161
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
+ L L E + GGYFI+NG E+V +I ++ ++ + +D + YT +
Sbjct: 162 RDLCELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFAKKDSKYAYTGECR--S 216
Query: 151 CVRKD-QSSVTLKLYYLLNGSV---------RLGFWLQGKEYLLPVGIVLKALVDTNDLE 200
C+ + + T+ + L G R+ L + +P+ IV +AL +D +
Sbjct: 217 CLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRD 276
Query: 201 IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
I H+ +++ P + E VK L E + + L IG +
Sbjct: 277 ILEHIIYDFED-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGS--RGAKP 321
Query: 261 GLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
G+ E A+ V++ + H+ ++ K L +M+ +L D+ D
Sbjct: 322 GVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 381
Query: 317 QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
N+ + L G L+ + ++ L++ + Q I + GK F+ LA IK ++
Sbjct: 382 GNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFI-DRGKDFNL-ELA-IK-------TR 431
Query: 377 QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
I ++ L TG Q Q RAG + RL F +S R ++ G +
Sbjct: 432 IISDGLKYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRLNSPIGRDG-KLA 489
Query: 437 SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
R+L WG +CP TP+G GL+ ++ ++ + IL L
Sbjct: 490 KPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYIS-----------VGSQPSPILEFL 538
Query: 497 IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAAS 550
M +L ++ + + ++G VG+ + E+++ LR+L+ VS S
Sbjct: 539 EEWSM-ENLEEISPAAIADATKIFVNGCWVGI--HKDPEQLMNTLRKLRRQMDIIVSEVS 595
Query: 551 VIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN------------I 598
+I D E + G L K + R+I E N +
Sbjct: 596 MIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVV 655
Query: 599 ELIGPFEQ--VFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRN 656
E I E+ V + + D + TH EIHP+ +L V A++ P+ DHNQSPRN
Sbjct: 656 EYIDTLEEETVMLAMTPDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRN 715
Query: 657 MYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAV 716
YQ M KQ MG + R D + L PQ P+V T + E P G N+IVA+
Sbjct: 716 TYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAI 775
Query: 717 LAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDA---- 772
+YTGY+ ED++I+N+S+VDRG Y++ S G D+ + + ++
Sbjct: 776 ASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKG--FDQEEVFEKPTRETCQGM 833
Query: 773 -KSLHSVIDSDGLPYVGQMIHPGE----PYCSIYDKTTNSWRTNSR----------KGSE 817
+++ +D DGL G + + ++ + TN R + SE
Sbjct: 834 RHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRYTKRDCSTFLRTSE 893
Query: 818 SVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSG 877
+ VD V V + + IR R R P IGDKF+SRHGQKG C + DMPF+
Sbjct: 894 TGIVDQVMVTLNQEGY--KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFT- 950
Query: 878 VTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
G+ PD+IINPHA PSRMTI L+E + K
Sbjct: 951 CEGITPDIIINPHAIPSRMTIGHLIECLQGK 981
>gi|374633176|ref|ZP_09705543.1| DNA-directed RNA polymerase subunit B [Metallosphaera
yellowstonensis MK1]
gi|373524660|gb|EHP69537.1| DNA-directed RNA polymerase subunit B [Metallosphaera
yellowstonensis MK1]
Length = 1124
Score = 241 bits (615), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 245/984 (24%), Positives = 413/984 (41%), Gaps = 162/984 (16%)
Query: 13 RELVRHHIESFDYMLDEGLSEMFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRE----- 67
R LVR H++SF+ + L E+ D + G ++ + G P VRE
Sbjct: 18 RGLVRQHLDSFNDFVRNKLQEIIDEQGEITTEIPG---LKIKLGKIRVGKPRVREADKGD 74
Query: 68 -----------------------------------RFNFGQFPVMLKTRRCHLQGADSQK 92
+ G P+MLK+ +K
Sbjct: 75 REITPMEARLRNLTYSAPIYLTMIPIENNIEGEPIEVHIGDIPIMLKSSADPTSELSPEK 134
Query: 93 LVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCV 152
LV + E+ + GGYFI+NG ERV I+ +++ + V T A +I
Sbjct: 135 LVEIGEDPKDPGGYFIINGSERV----IVTQEDLATNRVLVDVGKSGSNITHTAKIISST 190
Query: 153 RKDQSSVTLKLYYLLNGSVRLGF-WLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDE 211
+ +T++ L + ++ + F + G+ +P I+++AL + D ++ D
Sbjct: 191 AGYRVPITIE--RLKDSTIHVSFPAMPGR---IPFVILMRALGISTDRDV--TYAVSLDP 243
Query: 212 KYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVA 271
+ + E ++ + Q S+ T+ L IG V G + E A
Sbjct: 244 EIQNE--------------LLPSIEQASSIATKEDALDFIGNR---VAIGQKREMRIQKA 286
Query: 272 ETVIRDYIFVHL----NDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHL 327
E ++ Y HL +D K L F + KL L D+ D N+ + L G L
Sbjct: 287 EQILDKYFLPHLGTSPSDRMAKAYYLAFAVSKLIELYLGRREPDDKDHYANKRLKLAGDL 346
Query: 328 ITIYLKEKLEDWLRKGKKLIQ--DEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETM 385
+ + ++ K L+ ++ + G++ L + E+
Sbjct: 347 FASLFRVAFKAFV---KDLVYQLEKSKVRGRRLALNALVRPDIISERI------------ 391
Query: 386 LKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFA-GLRTTSVRKLLPE 444
R A TG + R G + +R N+L +S R V +S A G R L
Sbjct: 392 ----RHALATGNWVGGRTGVSQLLDRTNWLSMLSHLRRVV--SSLARGQPNFEARDLHGT 445
Query: 445 SWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIP- 503
WG +CP TP+G GL+ ++ +++ + R ++ + L +G+ P
Sbjct: 446 QWGRMCPFETPEGPNSGLVKNIALLAQISVGINER-----------NVEKTLYNLGVTPV 494
Query: 504 -SLPKLVKSGP-----PAVLSVLLDGRVVGVIP-SSEIEKVVAHLRRL-----KVSAASV 551
+ + V++G V+L+G++VG P E+ + + RR +V+ + +
Sbjct: 495 DEIIRKVEAGEDVSEYQGWSRVILNGKLVGYYPDGEELAQKIRDRRREGELSDEVNVSHM 554
Query: 552 IPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIG-PFEQVFME 610
+ + + Y+ G L + + V E+ +N++ F+ + E
Sbjct: 555 VTESFDEVYINCDGGRVRRPLVVVRNGKPLV--------AKEDIENLKKGKITFDTLVRE 606
Query: 611 IRCPDGGDGGRRNAFPA----------THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQC 660
+ NA A TH EI +L + A++ PY +HNQSPRN YQ
Sbjct: 607 GKIEFLDAEEEENALIAMEPKDVTKDHTHLEIWAPAVLGITASIIPYPEHNQSPRNTYQS 666
Query: 661 QMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYT 720
MAKQ +G + R D + + L PQ PIV+T G E P G NAI A+++YT
Sbjct: 667 AMAKQALGLYAANYQIRTDTRAHLLHYPQKPIVQTRALEAIGYTERPAGNNAIFALMSYT 726
Query: 721 GYDMEDAMILNKSSVDRGMCHGQIY-------------QTETIDLSDDGNKVDRGQKLFR 767
GY+MEDA+I+NKSSVDRGM + Q + I L + G + +G++ +R
Sbjct: 727 GYNMEDAVIMNKSSVDRGMFRSTFFRLYSAEEIKYPGGQEDQILLPEAGVRGYKGKEYYR 786
Query: 768 RNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSR---KGSESVFVDYV 824
+ + ++ G + + P + + + + ++ + E VD V
Sbjct: 787 LLESNGIVSPEVEVKGGDVLIGKVSPPRFLQEFKELSPDQSKRDTSIITRHGERGTVDLV 846
Query: 825 AVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPD 884
V + N + +R R R P IGDKF++RHGQKGV L P +DMP++ V G+ PD
Sbjct: 847 LVTETSDGN--KLVKVRVRDLRIPEIGDKFATRHGQKGVIGMLIPQVDMPYT-VRGLVPD 903
Query: 885 LIINPHAFPSRMTIAMLLESVAAK 908
+I+NPHA PSRMT+ ++E++A K
Sbjct: 904 IILNPHALPSRMTVGQIMEAIAGK 927
>gi|164657975|ref|XP_001730113.1| hypothetical protein MGL_2495 [Malassezia globosa CBS 7966]
gi|159104008|gb|EDP42899.1| hypothetical protein MGL_2495 [Malassezia globosa CBS 7966]
Length = 517
Score = 241 bits (615), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 131/265 (49%), Positives = 167/265 (63%), Gaps = 21/265 (7%)
Query: 662 MAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTG 721
M KQTMG A+ R D KLY LQT QTPIVR + + KY +D++P GTNAIVAV++YTG
Sbjct: 1 MGKQTMGTPSGAIARRTDNKLYRLQTGQTPIVRPSLHNKYAMDDFPNGTNAIVAVISYTG 60
Query: 722 YDMEDAMILNKSSVDRGMCHGQIYQTETIDLSD-----------------DGNKVDRGQK 764
YDMEDAMILNKS+ +RG +G +Y++E I L D V G
Sbjct: 61 YDMEDAMILNKSAHERGFGYGSVYKSEVIHLRDMMGGAGSGSGSSRGGRAGALPVHFGFG 120
Query: 765 LFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYV 824
R DA+ +D+DGLP+VG + G P + +++ T KG E+ +VD V
Sbjct: 121 PDIRADDAR--REQLDADGLPFVGTFMTRGTPLYACFNEATGRTIVKRYKGDEAAYVDTV 178
Query: 825 AVDMKNSKNLP-QKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRP 883
V ++ + Q I FR R+P+IGDKFSSRHGQKGVCSQ WP +DMPFS +GM+P
Sbjct: 179 RVIGSDAGDTECQHVQIMFRIPRSPVIGDKFSSRHGQKGVCSQKWPAVDMPFS-ESGMQP 237
Query: 884 DLIINPHAFPSRMTIAMLLESVAAK 908
D+IINPHAFPSRMTI ML+ES+A K
Sbjct: 238 DVIINPHAFPSRMTIGMLIESMAGK 262
>gi|399950027|gb|AFP65683.1| second-largest subunit of RNA polymerase III [Chroomonas
mesostigmatica CCMP1168]
Length = 1096
Score = 241 bits (615), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 243/918 (26%), Positives = 392/918 (42%), Gaps = 131/918 (14%)
Query: 39 RQAKISYTGKLMADVEFQYLDAGSPVVRER------FNFGQFPVMLKTRRCHLQGADSQK 92
R ++Y L D+ F + +R FN G+ P+MLK+ +C L G + ++
Sbjct: 81 RIRDLTYCASLFIDISF--------TIEKRIKYCFDFNLGKIPIMLKSNKCALFGKNEEQ 132
Query: 93 LVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCV 152
L+SLKE A + GGYFI+ G ER+ IL ++ + + S D+R
Sbjct: 133 LISLKECALDPGGYFIIKGNERI----ILIQEKIASNRI-SIETDKRGNVCAHVDFSNYG 187
Query: 153 RKDQSSVTLK---LYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY 209
+K+++++ +K LY+ R ++ + +P+ I+ A+ N +I + + Y
Sbjct: 188 KKNRNTIVMKNKKLYF------RNNYFFED----IPLFIIFVAIGLDNQHDIIDLIGNRY 237
Query: 210 D------EKYKKEKGAVGSP----LVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPV- 258
+ ++ K +G + V +R + + + +D S I + F+ +
Sbjct: 238 ENILQLSKQEAKHEGIASTNQAIRYVIQRFDLKIMKKKDTSTDYNTNHPSTIKKIFEAIV 297
Query: 259 ---IDGLQSESYYAVAETVIRDYIFVHLNDNN--DKFNLLIFMLQKLFSLVDHTSVSDNP 313
I GL+S S ND N +K +L M++++F +D + D+
Sbjct: 298 FRNILGLKSTS---------------EKNDKNSEEKIIILAMMVRRIFLSLDQPMIVDSK 342
Query: 314 DSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIEN-NGKKFDFFNLANIKKVMEK 372
D N+ L G L+++ ED RK K + E KK + N +++
Sbjct: 343 DYYGNKRFELAGKLVSVLF----EDLFRKTNKEFERYFEMVQKKKKETLN----HEIVPG 394
Query: 373 NPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVH-RGASFA 431
S I T E TG + ++ G T RL+F+ +S ++ +
Sbjct: 395 IRSDLITTGFEYAFSTGNWMVKPYQ--LEKNGITQLLSRLSFISTLSMLTKINSQNEKIR 452
Query: 432 GLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTS 491
+R R L WG +CP TP+GE CGL+ + + + S+ + K+
Sbjct: 453 KVRGP--RSLQTSQWGMVCPTETPEGESCGLVKDLAILAHITTAQKSKYLLEICFKLGAE 510
Query: 492 ILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASV 551
V + I + VK + L+GR VG S+ + R L+ S
Sbjct: 511 TF-VFSKISSIKTSSDFVK--------IFLNGRYVGF--HSQPSTFLYAFRSLRRSG--- 556
Query: 552 IPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIEL-IGPFEQVFME 610
+ Y+ + + + + + RP ++ + N E + E +FME
Sbjct: 557 ----MINKYISIYWDTFSSEIKILSDSGRICRPFMVVNSGKCKINNFEKSLLKKEALFME 612
Query: 611 IRCPDG-----GDGGRRNAF----------PATHEEIHPTGMLSVVANLTPYSDHNQSPR 655
G + NAF ++H EI P +L + NL P+SDHNQSPR
Sbjct: 613 NLSRKGFVEFLDVNEQNNAFISHDLKSLKVRSSHLEITPEIILGICGNLIPFSDHNQSPR 672
Query: 656 NMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVA 715
N YQC M KQ +G R D L L PQ P+VRT T G + +G N V
Sbjct: 673 NTYQCAMGKQAIGSISYNQNQRCDTVLSILLYPQKPLVRTKTVYFSGNNRLTSGINTCVC 732
Query: 716 VLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETI---DLSDDGNKVDRGQKLFRRNKDA 772
+++++GYD+ED++I+N+SS +RG+ + + I D + + K F NK
Sbjct: 733 IMSFSGYDIEDSIIMNRSSTERGLFRSFVMRKHKILVKDFLSEKKSLTTTNKKFLNNK-- 790
Query: 773 KSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSK 832
SD + VG + S YD S K V+ + + S
Sbjct: 791 -------KSDNIQKVGDLF-SNVTSNSFYDLGQIILSQVSHKEISGEMVEKIII----SS 838
Query: 833 NLPQK--ANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPH 890
N + A + R R P +GDKFSSRHGQKG+C L D+PFS G+ PDLI+NPH
Sbjct: 839 NFRELFFAKLVIRQIRKPEVGDKFSSRHGQKGICGFLCFQKDIPFSN-DGVIPDLIMNPH 897
Query: 891 AFPSRMTIAMLLESVAAK 908
FPSRMTI + E + K
Sbjct: 898 GFPSRMTIGKMFELLNGK 915
>gi|194209129|ref|XP_001916826.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB2-like [Equus caballus]
Length = 1174
Score = 241 bits (615), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 244/931 (26%), Positives = 399/931 (42%), Gaps = 107/931 (11%)
Query: 34 MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFN---FGQFPVMLKTRRCHLQGADS 90
M + R ++Y+ L D+ + G ++ + G+ P+ML++ C L G
Sbjct: 109 MPNEARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTD 168
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
+ L L E + GGYFI+NG E+V +I ++ ++ + +D + YT +
Sbjct: 169 RDLCELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFAKKDSKYAYTGECR--S 223
Query: 151 CVRKD-QSSVTLKLYYLLNGSV---------RLGFWLQGKEYLLPVGIVLKALVDTNDLE 200
C+ + + T+ + L G R+ L + +P+ IV +AL +D +
Sbjct: 224 CLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRD 283
Query: 201 IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
I H+ +++ P + E VK L E + + L IG +
Sbjct: 284 ILEHIIYDFED-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGS--RGAKP 328
Query: 261 GLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
G+ E A+ V++ + H+ ++ K L +M+ +L D+ D
Sbjct: 329 GVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 388
Query: 317 QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
N+ + L G L+ + ++ L++ + Q I + GK F+ LA IK ++
Sbjct: 389 GNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFI-DRGKDFNL-QLA-IK-------TR 438
Query: 377 QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
I ++ L TG Q Q RAG + RL F +S R ++ G +
Sbjct: 439 IISDGLKYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRLNSPIGRDG-KLA 496
Query: 437 SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
R+L WG +CP TP+G GL+ ++ ++ + IL L
Sbjct: 497 KPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYIS-----------VGSQPSPILEFL 545
Query: 497 IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAAS 550
M +L ++ + + ++G VG+ + E+++ LR+L+ VS S
Sbjct: 546 EEWSM-ENLEEISPAAIADATKIFVNGCWVGI--HKDPEQLMNTLRKLRRQMDIIVSEVS 602
Query: 551 VIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN------------I 598
+I D E + G L K + R+I E N +
Sbjct: 603 MIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVV 662
Query: 599 ELIGPFEQ--VFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRN 656
E I E+ V + + D + TH EIHP+ +L V A++ P+ DHNQSPRN
Sbjct: 663 EYIDTLEEETVMLAMTPDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRN 722
Query: 657 MYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAV 716
YQ M KQ MG + R D + L PQ P+V T + E P G N+IVA+
Sbjct: 723 TYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAI 782
Query: 717 LAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDA---- 772
+YTGY+ ED++I+N+S+VDRG Y++ S G D+ + + ++
Sbjct: 783 ASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKG--FDQEEVFEKPTRETCQGM 840
Query: 773 -KSLHSVIDSDGLPYVGQMIHPGE----PYCSIYDKTTNSWRTNSR----------KGSE 817
+++ +D DGL G + + ++ + TN R + SE
Sbjct: 841 RHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRYTKRDCSTFLRTSE 900
Query: 818 SVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSG 877
+ VD V V + + IR R R P IGDKF+SRHGQKG C + DMPF+
Sbjct: 901 TGIVDQVMVTLNQEGY--KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFT- 957
Query: 878 VTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
G+ PD+IINPHA PSRMTI L+E + K
Sbjct: 958 CEGITPDIIINPHAIPSRMTIGHLIECLQGK 988
>gi|23512288|gb|AAH38472.1| Polymerase (RNA) II (DNA directed) polypeptide B [Mus musculus]
Length = 1167
Score = 241 bits (615), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 245/932 (26%), Positives = 401/932 (43%), Gaps = 109/932 (11%)
Query: 34 MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVR---ERFNFGQFPVMLKTRRCHLQGADS 90
M + R ++Y+ L D+ + G ++ ++ G+ P+ML++ C L G
Sbjct: 102 MPNEARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTD 161
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
+ L L E + GGYFI+NG E+V +I ++ ++ + +D + YT + R
Sbjct: 162 RDLCELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFAKKDSKYAYTGEC---R 215
Query: 151 CVRKDQS--SVTLKLYYLLNGSV---------RLGFWLQGKEYLLPVGIVLKALVDTNDL 199
++ S + T+ + L G R+ L + +P+ IV +AL +D
Sbjct: 216 SCLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDR 275
Query: 200 EIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVI 259
+I H+ +++ P + E VK L E + + L IG +
Sbjct: 276 DILEHIIYDFED-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGS--RGAK 320
Query: 260 DGLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDS 315
G+ E A+ V++ + H+ ++ K L +M+ +L D+ D
Sbjct: 321 PGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDH 380
Query: 316 LQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPS 375
N+ + L G L+ + ++ L++ + Q I + GK F+ LA IK +
Sbjct: 381 YGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFI-DRGKDFNL-ELA-IK-------T 430
Query: 376 KQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRT 435
+ I ++ L TG Q Q RAG + RL F +S R ++ G +
Sbjct: 431 RIISDGLKYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRLNSPIGRDG-KL 488
Query: 436 TSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRV 495
R+L WG +CP TP+G GL+ ++ ++ + IL
Sbjct: 489 AKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYIS-----------VGSQPSPILEF 537
Query: 496 LIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAA 549
L M +L ++ + + ++G VG+ + E+++ LR+L+ VS
Sbjct: 538 LEEWSM-ENLEEISPAAIADATKIFVNGCWVGI--HKDPEQLMNTLRKLRRQMDIIVSEV 594
Query: 550 SVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN------------ 597
S+I D E + G L K + R+I E N
Sbjct: 595 SMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGV 654
Query: 598 IELIGPFEQ--VFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPR 655
+E I E+ V + + D + TH EIHP+ +L V A++ P+ DHNQSPR
Sbjct: 655 VEYIDTLEEETVMLAMTPDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPR 714
Query: 656 NMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVA 715
N YQ M KQ MG + R D + L PQ P+V T + E P G N+IVA
Sbjct: 715 NTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVA 774
Query: 716 VLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDA--- 772
+ +YTGY+ ED++I+N+S+VDRG Y++ S G D+ + + ++
Sbjct: 775 IASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKG--FDQEEVFEKPTRETCQG 832
Query: 773 --KSLHSVIDSDGLPYVGQMIHPGE----PYCSIYDKTTNSWRTNSR----------KGS 816
+++ +D DGL G + + ++ + TN R + S
Sbjct: 833 MRHAIYEKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRYTKRDCSTFLRTS 892
Query: 817 ESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFS 876
E+ VD V V + + IR R R P IGDKF+SRHGQKG C + DMPF+
Sbjct: 893 ETGIVDQVMVTLNQEGY--KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFT 950
Query: 877 GVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
G+ PD+IINPHA PSRMTI L+E + K
Sbjct: 951 -CEGITPDIIINPHAIPSRMTIGHLIECLQGK 981
>gi|303390954|ref|XP_003073707.1| DNA-directed RNA polymerase subunit beta [Encephalitozoon
intestinalis ATCC 50506]
gi|303302855|gb|ADM12347.1| DNA-directed RNA polymerase subunit beta [Encephalitozoon
intestinalis ATCC 50506]
Length = 1140
Score = 241 bits (614), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 246/923 (26%), Positives = 406/923 (43%), Gaps = 109/923 (11%)
Query: 36 DHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFN---FGQFPVMLKTRRCHLQGADSQK 92
+ R ++Y L DV + + V + +++ FG PVML++ C L G +
Sbjct: 93 NEARIRDLTYASPLFIDVTKETISELGVVDKHKYSRVPFGSLPVMLRSSYCVLYGLSDKD 152
Query: 93 LVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCV 152
L+ L E + GGYFI+NG E+V I+ ++ + V + + YT A IR V
Sbjct: 153 LIDLGECPYDQGGYFIVNGSEKV----IVAQERMASNTVYVFKKAQPATYTHYAE-IRSV 207
Query: 153 ----RKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCC 208
++ S++++KL G +R+ L ++ +P+ ++ +AL +D EI +H+
Sbjct: 208 PEKSSRNPSTLSMKLCRS-PGVIRVSLPLVKQD--IPLFVLYRALGFLSDKEIIDHI--L 262
Query: 209 Y---DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSE 265
Y DE ++ K ++ +V VQD ++ L +IG+ PV G E
Sbjct: 263 YEDDDEMFELLKESIEEGMV----------VQDQNVA-----LDYIGKRSAPV--GTPQE 305
Query: 266 SYYAVAETVIRDYIFVHLNDN----NDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEI 321
+A+ ++ + H+ K + +++Q+L + D+ D + +
Sbjct: 306 KRIIIAKDLLAKEVLPHIGTQEFCETKKAYFIGYIVQRLLLVALGRKNPDDRDHYGKKRM 365
Query: 322 LLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTS 381
L G L+ + + + +Q IEN + FN+A K + I
Sbjct: 366 DLSGPLLASLFRTLFKKLCADTTRHMQKCIENGRE----FNIALGLK------ASIITQG 415
Query: 382 IETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKL 441
L TG Q +Q RAG R NF+ +S R V+ G + + R+L
Sbjct: 416 FRYALATGNWGDQAKA-MQTRAGVAQVLNRYNFVSTLSHLRRVNTPIEKEG-KLAAPRQL 473
Query: 442 LPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGM 501
WG +CP TP+G+ CGL+ +++ + S S G + +F L G
Sbjct: 474 HNTHWGMVCPAETPEGQACGLVKNLSLMAYI-SVGSSSGPLVEF----------LEECG- 521
Query: 502 IPSLPKLVKSGPPAVLSVLLDGRVVGV--IPSSEIEKVVAHLRRLKVSAASVIPDDLEVG 559
+ SL ++ A + ++G VG+ P I+ + R L++ I D+
Sbjct: 522 VESLEEISTPQLNAATKIFVNGIWVGIHSDPVYLIKSLKLLRRSLEMDKEVSIVRDIREK 581
Query: 560 YVPLSLGGAYPGLYLFT--------SPPKFVRPVR-NISLPSEESQN-IELIGPFEQ--- 606
+ + P L +P R R I + S+ IE + E+
Sbjct: 582 EIRIQSDAGRPCRPLLVVKNNELVITPEDIKRLKRGEIKWDNLISEGFIEFLDVEEEEMS 641
Query: 607 -VFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQ 665
+ M + + TH EIHP +L + A+ P+ DHNQSPRN YQ M KQ
Sbjct: 642 MIAMNTKALEESKKASDVKISYTHCEIHPALILGICASTIPFPDHNQSPRNTYQSAMGKQ 701
Query: 666 TMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDME 725
MG R D L PQ P+V T + E P+G NA+VA+ Y+GY+ E
Sbjct: 702 AMGIYATNFLLRMDTLSNILFYPQKPLVTTKSMEYLRFKELPSGQNALVAIACYSGYNQE 761
Query: 726 DAMILNKSSVDRGMCHGQIYQTETID-------LSDDGNKVDRGQKLFRRNKDAKSLHSV 778
D++I+N+S++DRG+ Y+T T ++++ K RG L +N + ++
Sbjct: 762 DSIIMNQSAIDRGLFRSFFYRTYTDQESMSRPGVNEEFCKPSRGTVLRMKNLN----YNK 817
Query: 779 IDSDGL-----------PYVGQMIHPGEPYCSIYDKTTNSWRTNSR--KGSESVFVDYVA 825
+D DGL +G++ +P S + ++ +S + +E+ VD V
Sbjct: 818 LDEDGLISPGTRVTGDDVLIGKITPILDPERSTKEAPVYVYKDSSTAMRRTETGIVDTVI 877
Query: 826 VDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDL 885
V K+ + I+ R R P +GDKF+SRH QKG DMPF+ G+ PD+
Sbjct: 878 VTNKDGYKF---SKIKVRSGRIPQMGDKFASRHAQKGTIGITLRQEDMPFTS-DGIVPDI 933
Query: 886 IINPHAFPSRMTIAMLLESVAAK 908
IINPHA PSRMTI L+E + K
Sbjct: 934 IINPHAIPSRMTIGHLIECLLGK 956
>gi|194379208|dbj|BAG58155.1| unnamed protein product [Homo sapiens]
Length = 1167
Score = 241 bits (614), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 245/932 (26%), Positives = 401/932 (43%), Gaps = 109/932 (11%)
Query: 34 MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVR---ERFNFGQFPVMLKTRRCHLQGADS 90
M + R ++Y+ L D+ + G ++ ++ G+ P+ML++ C L G
Sbjct: 102 MPNEARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTD 161
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
+ L L E + GGYFI+NG E+V +I ++ ++ + +D + YT + R
Sbjct: 162 RDLCELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFAKKDSKYAYTGEC---R 215
Query: 151 CVRKDQS--SVTLKLYYLLNGSV---------RLGFWLQGKEYLLPVGIVLKALVDTNDL 199
++ S + T+ + L G R+ L + +P+ IV +AL +D
Sbjct: 216 SCLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDR 275
Query: 200 EIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVI 259
+I H+ +++ P + E VK L E + + L IG +
Sbjct: 276 DILEHIIYDFED-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGS--RGAK 320
Query: 260 DGLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDS 315
G+ E A+ V++ + H+ ++ K L +M+ +L D+ D
Sbjct: 321 PGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDH 380
Query: 316 LQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPS 375
N+ + L G L+ + ++ L++ + Q I + GK F+ LA IK +
Sbjct: 381 YGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFI-DRGKDFNL-ELA-IK-------T 430
Query: 376 KQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRT 435
+ I ++ L TG Q Q RAG + RL F +S R ++ G +
Sbjct: 431 RIISDGLKYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRLNSPIGRDG-KL 488
Query: 436 TSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRV 495
R+L WG +CP TP+G GL+ ++ ++ + IL
Sbjct: 489 AKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYIS-----------VGSQPSPILEF 537
Query: 496 LIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAA 549
L M +L ++ + + ++G VG+ + E+++ LR+L+ VS
Sbjct: 538 LEEWSM-ENLEEISPAAIADATKIFVNGCWVGI--HKDPEQLMNTLRKLRRQMDIIVSEV 594
Query: 550 SVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN------------ 597
S+I D E + G L K + R+I E N
Sbjct: 595 SMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGV 654
Query: 598 IELIGPFEQ--VFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPR 655
+E I E+ V + + D + TH EIHP+ +L V A++ P+ DHNQSPR
Sbjct: 655 VEYIDTLEEETVMLAMTPDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPR 714
Query: 656 NMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVA 715
N YQ M KQ MG + R D + L PQ P+V T + E P G N+IVA
Sbjct: 715 NTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVA 774
Query: 716 VLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDA--- 772
+ +YTGY+ ED++I+N+S+VDRG Y++ S G D+ + + ++
Sbjct: 775 IASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKG--FDQEEVFEKPTRETCQG 832
Query: 773 --KSLHSVIDSDGLPYVGQMIHPGE----PYCSIYDKTTNSWRTNSR----------KGS 816
+++ +D DGL G + + ++ + TN R + S
Sbjct: 833 MRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRYTKRDCSTFLRTS 892
Query: 817 ESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFS 876
E+ VD V V + + IR R R P IGDKF+SRHGQKG C + DMPF+
Sbjct: 893 ETGIVDQVMVTLNQEGY--KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFT 950
Query: 877 GVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
G+ PD+IINPHA PSRMTI L+E + K
Sbjct: 951 -CEGITPDIIINPHAIPSRMTIGHLIECLQGK 981
>gi|324120596|dbj|BAJ78689.1| RNA polymerase II second largest subunit [Lepidocampa weberi]
Length = 1179
Score = 241 bits (614), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 245/933 (26%), Positives = 404/933 (43%), Gaps = 110/933 (11%)
Query: 34 MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVR---ERFNFGQFPVMLKTRRCHLQGADS 90
M + R ++Y+ L D+ + G + ++ G+ P+ML++ C L G
Sbjct: 113 MPNEARLRNLTYSAPLYVDITKSVIKEGEEAIETQHQKTFIGKIPIMLRSTYCLLNGLTD 172
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
+ L L E + GGYFI+NG E+V +I ++ ++ S +D + Y KA +
Sbjct: 173 RDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFSMKDGKYAY--KAEIRS 227
Query: 151 CVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
C+ + + TL + L G + G+ + +P+ IV +AL D +
Sbjct: 228 CLEHSSRPTSTLWVNMLARGGQSIKKSAIGQRIIAVVPYIKQEIPIMIVFRALGFVADRD 287
Query: 201 IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAE---VQDLSLTTRLQCLQHIGEHFQP 257
I H+ +D+ P + E VK L E VQ+ ++ L IG +
Sbjct: 288 ILEHIIYDFDD-----------PEMMEMVKPSLDEAFVVQEQNVA-----LNFIGA--RG 329
Query: 258 VIDGLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNP 313
G+ E A +++ + H+ ++ K L +M+ +L D+
Sbjct: 330 ARPGVTKEKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDR 389
Query: 314 DSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKN 373
D N+ + L G L+ + ++ L++ + Q I + GK F+ LA IK
Sbjct: 390 DHYGNKRLDLAGPLLAFLFRGLFKNLLKEVRIYSQKFI-DRGKDFN-LELA-IK------ 440
Query: 374 PSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGL 433
++ I + L TG Q Q RAG + RL F +S R V+ G
Sbjct: 441 -TRIITDGLRYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRVNSPIGRDG- 497
Query: 434 RTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSIL 493
+ R+L WG +CP TP+G GL+ ++ ++ + IL
Sbjct: 498 KLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYIS-----------VGSQPSPIL 546
Query: 494 RVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VS 547
L M +L ++ S + ++G VG+ + E++++ LR+L+ VS
Sbjct: 547 EFLEEWSM-ENLEEIAPSAIADATKIFVNGCWVGI--HRDPEQLMSTLRKLRRQMDIIVS 603
Query: 548 AASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN---------- 597
S+I D + + G L + R+I + E N
Sbjct: 604 EVSMIRDIRDREIRIYTDAGRICRPLLIVEGGRLALKKRHIEMLKEREYNNYGWQDLVAS 663
Query: 598 --IELIGPF-EQVFMEIRCPDGGDGGRRNAFPA--THEEIHPTGMLSVVANLTPYSDHNQ 652
+E I E+ M P+ + A+ TH EIHP +L V A++ P+ DHNQ
Sbjct: 664 GVVEYIDTLEEETVMIAMSPEDLRQDKEYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQ 723
Query: 653 SPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNA 712
SPRN YQ M KQ MG + R D + L PQ P+V T + E P G N+
Sbjct: 724 SPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLFYPQKPLVTTRSMEYLRFRELPAGINS 783
Query: 713 IVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT-ETIDLSDDGNKVDRGQKLFRRNKD 771
+VA+ YTGY+ ED++I+N S+V+RG Y++ + + G++ ++ +K +
Sbjct: 784 VVAIACYTGYNQEDSVIMNASAVERGFFRSVFYRSYKDQECKRSGDQEEQFEKPTKETCQ 843
Query: 772 A--KSLHSVIDSDGL-----------PYVGQMIHPGEPYCSIYDKTTNSWRTNSR---KG 815
+++ +D DG+ +G+ I E + T + ++ +
Sbjct: 844 GMRNAIYDKLDEDGIIAPGIRVSGDDVIIGKTITLPENDDELEGTTRRFTKRDASTFLRN 903
Query: 816 SESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPF 875
SE+ VD V V + N++ + IR R R P IGDKF+SRHGQKG C + DM F
Sbjct: 904 SETGIVDQVMVTL-NAEGY-KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMIF 961
Query: 876 SGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
+ G+ PD+IINPHA PSRMTI L+E + K
Sbjct: 962 T-CEGLTPDIIINPHAIPSRMTIGHLIECLQGK 993
>gi|226958589|ref|NP_722493.2| DNA-directed RNA polymerase II subunit RPB2 [Mus musculus]
gi|51702009|sp|Q8CFI7.2|RPB2_MOUSE RecName: Full=DNA-directed RNA polymerase II subunit RPB2; AltName:
Full=DNA-directed RNA polymerase II 140 kDa polypeptide;
AltName: Full=DNA-directed RNA polymerase II subunit B;
AltName: Full=RNA polymerase II subunit 2; AltName:
Full=RNA polymerase II subunit B2
gi|148705989|gb|EDL37936.1| polymerase (RNA) II (DNA directed) polypeptide B [Mus musculus]
Length = 1174
Score = 241 bits (614), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 244/931 (26%), Positives = 400/931 (42%), Gaps = 107/931 (11%)
Query: 34 MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVR---ERFNFGQFPVMLKTRRCHLQGADS 90
M + R ++Y+ L D+ + G ++ ++ G+ P+ML++ C L G
Sbjct: 109 MPNEARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTD 168
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
+ L L E + GGYFI+NG E+V +I ++ ++ + +D + YT +
Sbjct: 169 RDLCELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFAKKDSKYAYTGECR--S 223
Query: 151 CVRKD-QSSVTLKLYYLLNGSV---------RLGFWLQGKEYLLPVGIVLKALVDTNDLE 200
C+ + + T+ + L G R+ L + +P+ IV +AL +D +
Sbjct: 224 CLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRD 283
Query: 201 IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
I H+ +++ P + E VK L E + + L IG +
Sbjct: 284 ILEHIIYDFED-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGS--RGAKP 328
Query: 261 GLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
G+ E A+ V++ + H+ ++ K L +M+ +L D+ D
Sbjct: 329 GVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 388
Query: 317 QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
N+ + L G L+ + ++ L++ + Q I + GK F+ LA IK ++
Sbjct: 389 GNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFI-DRGKDFNL-ELA-IK-------TR 438
Query: 377 QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
I ++ L TG Q Q RAG + RL F +S R ++ G +
Sbjct: 439 IISDGLKYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRLNSPIGRDG-KLA 496
Query: 437 SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
R+L WG +CP TP+G GL+ ++ ++ + IL L
Sbjct: 497 KPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYIS-----------VGSQPSPILEFL 545
Query: 497 IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAAS 550
M +L ++ + + ++G VG+ + E+++ LR+L+ VS S
Sbjct: 546 EEWSM-ENLEEISPAAIADATKIFVNGCWVGI--HKDPEQLMNTLRKLRRQMDIIVSEVS 602
Query: 551 VIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN------------I 598
+I D E + G L K + R+I E N +
Sbjct: 603 MIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVV 662
Query: 599 ELIGPFEQ--VFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRN 656
E I E+ V + + D + TH EIHP+ +L V A++ P+ DHNQSPRN
Sbjct: 663 EYIDTLEEETVMLAMTPDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRN 722
Query: 657 MYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAV 716
YQ M KQ MG + R D + L PQ P+V T + E P G N+IVA+
Sbjct: 723 TYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAI 782
Query: 717 LAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDA---- 772
+YTGY+ ED++I+N+S+VDRG Y++ S G D+ + + ++
Sbjct: 783 ASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKG--FDQEEVFEKPTRETCQGM 840
Query: 773 -KSLHSVIDSDGLPYVGQMIHPGE----PYCSIYDKTTNSWRTNSR----------KGSE 817
+++ +D DGL G + + ++ + TN R + SE
Sbjct: 841 RHAIYEKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRYTKRDCSTFLRTSE 900
Query: 818 SVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSG 877
+ VD V V + + IR R R P IGDKF+SRHGQKG C + DMPF+
Sbjct: 901 TGIVDQVMVTLNQEGY--KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFT- 957
Query: 878 VTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
G+ PD+IINPHA PSRMTI L+E + K
Sbjct: 958 CEGITPDIIINPHAIPSRMTIGHLIECLQGK 988
>gi|146094444|ref|XP_001467277.1| putative DNA-directed RNA polymerase II subunit 2 [Leishmania
infantum JPCM5]
gi|398019887|ref|XP_003863107.1| DNA-directed RNA polymerase II subunit 2, putative [Leishmania
donovani]
gi|134071642|emb|CAM70332.1| putative DNA-directed RNA polymerase II subunit 2 [Leishmania
infantum JPCM5]
gi|322501339|emb|CBZ36417.1| DNA-directed RNA polymerase II subunit 2, putative [Leishmania
donovani]
Length = 1181
Score = 241 bits (614), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 242/925 (26%), Positives = 418/925 (45%), Gaps = 105/925 (11%)
Query: 36 DHCRQAKISY--TGKLMADVEFQYLDAGSP--VVRERFNFGQFPVMLKTRRCHLQGADSQ 91
+ CR ++Y ++ VE + A +P G+ P+MLK+ RC+L G D
Sbjct: 123 NECRLRDMTYDAQAQVTLGVELYHPHADTPHDTFLRNVELGRIPIMLKSMRCNLSGKDED 182
Query: 92 KLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRC 151
+L L E + GGYF++NG E+V ++ ++ + V + R + K++V
Sbjct: 183 ELPRLNECPHDQGGYFVINGTEKV----LIAQERQAANHVYTFSRQKGLLCEVKSIVEGS 238
Query: 152 VRKDQSSVTLKLYYLL---NGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCC 208
+ K ++ + Y +G L + + +P+ ++ +A+ D EI T
Sbjct: 239 LNKPRTLQIIMQYKNKGPGSGFENLMCRVAQMDETIPLFVLFRAMDMVADKEILQ--TVV 296
Query: 209 YDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHF--QPVIDGLQSES 266
D K + E ++ +++ L + TR + L +IG Q + LQ E
Sbjct: 297 PDLK---------DTAMLELLRGSMSDASTLQIFTREEALGYIGRRLGKQDAMANLQRE- 346
Query: 267 YYAVAETVIRDYIFVHL----NDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEIL 322
AE+++ + H+ + N K + +M+ KL + + D L ++ I
Sbjct: 347 ----AESLLMRDLLPHMGTDPSANRTKCLYMGYMVHKLLLVALGRHEETDRDFLGHKRID 402
Query: 323 LPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSI 382
+ G L+T+ L+ L ++ K +QD N F F + + K++ + + T
Sbjct: 403 VAGTLLTVQLQTFLAQVRKEMIKTLQDHAANPRGVFSFGRVIH-SKLITDGLRRCLATGN 461
Query: 383 ETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLL 442
LKTG + T G RL + +S R + + A + T R L
Sbjct: 462 FGDLKTGNIKT----------GVAQTLNRLTYSSSLSNLRRIQNPIA-ASSKATRPRNLH 510
Query: 443 PESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMI 502
WG++CPV TP+G GLL ++ C + SRG D +++ ++ + G I
Sbjct: 511 CTQWGYICPVETPEGGSIGLLKNVALMCLM-----SRGT--DHAEVVQAVQARIDGFRTI 563
Query: 503 PSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSA-----ASVIPD--D 555
L + V V ++G ++GV E+++ LR + + S++ D D
Sbjct: 564 ----GLEDTADVRVARVFVNGTMIGV--DRNPERLLHDLRTRRRNGELSNEVSIVRDIRD 617
Query: 556 LEVGYVPLSLGGAYPGLYLFTSPPKFVRP--VRNISLPSEES---QNIELIGPFEQVFME 610
E+ V G L++ + +R +RN+ L SE++ ++I ++ ++E
Sbjct: 618 REI-RVFSDAGRCLRPLFVAENCHLKLRKSGMRNL-LVSEKAGGKKSISWNTALKKGYVE 675
Query: 611 -IRCPDGGD-------GGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQM 662
I C + + +H E+ P+ +L + A++ PY +HNQSPRN YQ M
Sbjct: 676 LIDCEEEDSLLIAMTPNEVEKNYYYSHCEMDPSMILGICASIIPYPNHNQSPRNTYQSAM 735
Query: 663 AKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGY 722
KQ MG R D + L PQ P+VRT T ++ P G NA+VA+ Y+GY
Sbjct: 736 GKQAMGIYASNFNMRMDTTAHVLFYPQKPLVRTKAMTYMHSNDLPAGHNAVVAISCYSGY 795
Query: 723 DMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKD----AKSLHSV 778
+ ED++I+++S+V+RG ++ + ++ K D + +++ ++ +S
Sbjct: 796 NQEDSIIMSRSAVERGFFRSAFWR--SFKAKEERQKRDALETFENPDRELCRVKRADYSK 853
Query: 779 IDSDGLPYVGQMIHPGE---------PYCSIYDKTTNSWRTNSRKGS------ESVFVDY 823
+D+DGL G + G+ P + TT + + R S E VD
Sbjct: 854 LDTDGLIKPGMRVLGGDVVVGKTIPLPEADLEKLTTGNTKITKRDASITSRTTEKGVVDK 913
Query: 824 VAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRP 883
V + M N+ + ++ R + P IGDKF SRHGQKG + DMPF+ G+ P
Sbjct: 914 VMLTMNNNDRFTK---VKIRTIKIPNIGDKFCSRHGQKGTNGIQFRQEDMPFNR-DGIVP 969
Query: 884 DLIINPHAFPSRMTIAMLLESVAAK 908
DLIINPHA PSRMT+A L+E++A K
Sbjct: 970 DLIINPHAIPSRMTVAHLIETLAGK 994
>gi|4505941|ref|NP_000929.1| DNA-directed RNA polymerase II subunit RPB2 [Homo sapiens]
gi|157822127|ref|NP_001099472.1| DNA-directed RNA polymerase II subunit RPB2 [Rattus norvegicus]
gi|387849108|ref|NP_001248426.1| DNA-directed RNA polymerase II subunit RPB2 [Macaca mulatta]
gi|114594586|ref|XP_517275.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 2
[Pan troglodytes]
gi|296196473|ref|XP_002745851.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Callithrix
jacchus]
gi|297673513|ref|XP_002814803.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 4
[Pongo abelii]
gi|332238537|ref|XP_003268457.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Nomascus
leucogenys]
gi|348571889|ref|XP_003471727.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Cavia
porcellus]
gi|354498860|ref|XP_003511530.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like
[Cricetulus griseus]
gi|395851369|ref|XP_003798233.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 1
[Otolemur garnettii]
gi|402869719|ref|XP_003898895.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 1
[Papio anubis]
gi|401012|sp|P30876.1|RPB2_HUMAN RecName: Full=DNA-directed RNA polymerase II subunit RPB2; AltName:
Full=DNA-directed RNA polymerase II 140 kDa polypeptide;
AltName: Full=DNA-directed RNA polymerase II subunit B;
AltName: Full=RNA polymerase II subunit 2; AltName:
Full=RNA polymerase II subunit B2
gi|36122|emb|CAA45124.1| RNA polymerase II 140 kDa subunit [Homo sapiens]
gi|254869|gb|AAB23139.1| RNA polymerase II second largest subunit, RNA polymerase B second
largest subunit [human, HeLa cells, Peptide, 1174 aa]
gi|33870592|gb|AAH23503.2| Polymerase (RNA) II (DNA directed) polypeptide B, 140kDa [Homo
sapiens]
gi|119625924|gb|EAX05519.1| polymerase (RNA) II (DNA directed) polypeptide B, 140kDa [Homo
sapiens]
gi|149035168|gb|EDL89872.1| polymerase (RNA) II (DNA directed) polypeptide B (predicted)
[Rattus norvegicus]
gi|158260669|dbj|BAF82512.1| unnamed protein product [Homo sapiens]
gi|168277428|dbj|BAG10692.1| DNA-directed RNA polymerase II subunit RPB2 [synthetic construct]
gi|355749385|gb|EHH53784.1| DNA-directed RNA polymerase II subunit RPB2 [Macaca fascicularis]
gi|380783295|gb|AFE63523.1| DNA-directed RNA polymerase II subunit RPB2 [Macaca mulatta]
gi|383413177|gb|AFH29802.1| DNA-directed RNA polymerase II subunit RPB2 [Macaca mulatta]
gi|384941246|gb|AFI34228.1| DNA-directed RNA polymerase II subunit RPB2 [Macaca mulatta]
gi|410224966|gb|JAA09702.1| polymerase (RNA) II (DNA directed) polypeptide B, 140kDa [Pan
troglodytes]
gi|410261216|gb|JAA18574.1| polymerase (RNA) II (DNA directed) polypeptide B, 140kDa [Pan
troglodytes]
gi|410306896|gb|JAA32048.1| polymerase (RNA) II (DNA directed) polypeptide B, 140kDa [Pan
troglodytes]
gi|410306898|gb|JAA32049.1| polymerase (RNA) II (DNA directed) polypeptide B, 140kDa [Pan
troglodytes]
gi|410306900|gb|JAA32050.1| polymerase (RNA) II (DNA directed) polypeptide B, 140kDa [Pan
troglodytes]
gi|410350135|gb|JAA41671.1| polymerase (RNA) II (DNA directed) polypeptide B, 140kDa [Pan
troglodytes]
Length = 1174
Score = 241 bits (614), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 244/931 (26%), Positives = 399/931 (42%), Gaps = 107/931 (11%)
Query: 34 MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFN---FGQFPVMLKTRRCHLQGADS 90
M + R ++Y+ L D+ + G ++ + G+ P+ML++ C L G
Sbjct: 109 MPNEARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTD 168
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
+ L L E + GGYFI+NG E+V +I ++ ++ + +D + YT +
Sbjct: 169 RDLCELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFAKKDSKYAYTGECR--S 223
Query: 151 CVRKD-QSSVTLKLYYLLNGSV---------RLGFWLQGKEYLLPVGIVLKALVDTNDLE 200
C+ + + T+ + L G R+ L + +P+ IV +AL +D +
Sbjct: 224 CLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRD 283
Query: 201 IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
I H+ +++ P + E VK L E + + L IG +
Sbjct: 284 ILEHIIYDFED-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGS--RGAKP 328
Query: 261 GLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
G+ E A+ V++ + H+ ++ K L +M+ +L D+ D
Sbjct: 329 GVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 388
Query: 317 QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
N+ + L G L+ + ++ L++ + Q I + GK F+ LA IK ++
Sbjct: 389 GNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFI-DRGKDFNL-ELA-IK-------TR 438
Query: 377 QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
I ++ L TG Q Q RAG + RL F +S R ++ G +
Sbjct: 439 IISDGLKYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRLNSPIGRDG-KLA 496
Query: 437 SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
R+L WG +CP TP+G GL+ ++ ++ + IL L
Sbjct: 497 KPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYIS-----------VGSQPSPILEFL 545
Query: 497 IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAAS 550
M +L ++ + + ++G VG+ + E+++ LR+L+ VS S
Sbjct: 546 EEWSM-ENLEEISPAAIADATKIFVNGCWVGI--HKDPEQLMNTLRKLRRQMDIIVSEVS 602
Query: 551 VIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN------------I 598
+I D E + G L K + R+I E N +
Sbjct: 603 MIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVV 662
Query: 599 ELIGPFEQ--VFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRN 656
E I E+ V + + D + TH EIHP+ +L V A++ P+ DHNQSPRN
Sbjct: 663 EYIDTLEEETVMLAMTPDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRN 722
Query: 657 MYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAV 716
YQ M KQ MG + R D + L PQ P+V T + E P G N+IVA+
Sbjct: 723 TYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAI 782
Query: 717 LAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDA---- 772
+YTGY+ ED++I+N+S+VDRG Y++ S G D+ + + ++
Sbjct: 783 ASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKG--FDQEEVFEKPTRETCQGM 840
Query: 773 -KSLHSVIDSDGLPYVGQMIHPGE----PYCSIYDKTTNSWRTNSR----------KGSE 817
+++ +D DGL G + + ++ + TN R + SE
Sbjct: 841 RHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRYTKRDCSTFLRTSE 900
Query: 818 SVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSG 877
+ VD V V + + IR R R P IGDKF+SRHGQKG C + DMPF+
Sbjct: 901 TGIVDQVMVTLNQEGY--KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFT- 957
Query: 878 VTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
G+ PD+IINPHA PSRMTI L+E + K
Sbjct: 958 CEGITPDIIINPHAIPSRMTIGHLIECLQGK 988
>gi|417413545|gb|JAA53095.1| Putative rna polymerase i second largest subunit, partial [Desmodus
rotundus]
Length = 1144
Score = 241 bits (614), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 245/932 (26%), Positives = 400/932 (42%), Gaps = 109/932 (11%)
Query: 34 MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFN---FGQFPVMLKTRRCHLQGADS 90
M + R ++Y+ L D+ + G ++ + G+ P+ML++ C L G
Sbjct: 79 MPNEARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTD 138
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
+ L L E + GGYFI+NG E+V +I ++ ++ + +D + YT + R
Sbjct: 139 RDLCELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFAKKDSKYAYTGEC---R 192
Query: 151 CVRKDQS--SVTLKLYYLLNGSV---------RLGFWLQGKEYLLPVGIVLKALVDTNDL 199
++ S + T+ + L G R+ L + +P+ IV +AL +D
Sbjct: 193 SCLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDR 252
Query: 200 EIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVI 259
+I H+ +++ P + E VK L E + + L IG +
Sbjct: 253 DILEHIIYDFED-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGS--RGAK 297
Query: 260 DGLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDS 315
G+ E A+ V++ + H+ ++ K L +M+ +L D+ D
Sbjct: 298 PGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDH 357
Query: 316 LQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPS 375
N+ + L G L+ + ++ L++ + Q I + GK F+ LA IK +
Sbjct: 358 YGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFI-DRGKDFNL-ELA-IK-------T 407
Query: 376 KQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRT 435
+ I ++ L TG Q Q RAG + RL F +S R ++ G +
Sbjct: 408 RIISDGLKYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRLNSPIGRDG-KL 465
Query: 436 TSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRV 495
R+L WG +CP TP+G GL+ ++ ++ + IL
Sbjct: 466 AKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYIS-----------VGSQPSPILEF 514
Query: 496 LIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAA 549
L M +L ++ + + ++G VG+ + E+++ LR+L+ VS
Sbjct: 515 LEEWSM-ENLEEISPAAIADATKIFVNGCWVGI--HKDPEQLMNTLRKLRRQMDIIVSEV 571
Query: 550 SVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN------------ 597
S+I D E + G L K + R+I E N
Sbjct: 572 SMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGV 631
Query: 598 IELIGPFEQ--VFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPR 655
+E I E+ V + + D + TH EIHP+ +L V A++ P+ DHNQSPR
Sbjct: 632 VEYIDTLEEETVMLAMTPDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPR 691
Query: 656 NMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVA 715
N YQ M KQ MG + R D + L PQ P+V T + E P G N+IVA
Sbjct: 692 NTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVA 751
Query: 716 VLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDA--- 772
+ +YTGY+ ED++I+N+S+VDRG Y++ S G D+ + + ++
Sbjct: 752 IASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKG--FDQEEVFEKPTRETCQG 809
Query: 773 --KSLHSVIDSDGLPYVGQMIHPGE----PYCSIYDKTTNSWRTNSR----------KGS 816
+++ +D DGL G + + ++ + TN R + S
Sbjct: 810 MRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRYTKRDCSTFLRTS 869
Query: 817 ESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFS 876
E+ VD V V + + IR R R P IGDKF+SRHGQKG C + DMPF+
Sbjct: 870 ETGIVDQVMVTLNQEGY--KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFT 927
Query: 877 GVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
G+ PD+IINPHA PSRMTI L+E + K
Sbjct: 928 -CEGITPDIIINPHAIPSRMTIGHLIECLQGK 958
>gi|291401757|ref|XP_002717206.1| PREDICTED: DNA directed RNA polymerase II polypeptide B
[Oryctolagus cuniculus]
Length = 1174
Score = 241 bits (614), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 244/931 (26%), Positives = 399/931 (42%), Gaps = 107/931 (11%)
Query: 34 MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFN---FGQFPVMLKTRRCHLQGADS 90
M + R ++Y+ L D+ + G ++ + G+ P+ML++ C L G
Sbjct: 109 MPNEARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTD 168
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
+ L L E + GGYFI+NG E+V +I ++ ++ + +D + YT +
Sbjct: 169 RDLCELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFAKKDSKYAYTGECR--S 223
Query: 151 CVRKD-QSSVTLKLYYLLNGSV---------RLGFWLQGKEYLLPVGIVLKALVDTNDLE 200
C+ + + T+ + L G R+ L + +P+ IV +AL +D +
Sbjct: 224 CLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRD 283
Query: 201 IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
I H+ +++ P + E VK L E + + L IG +
Sbjct: 284 ILEHIIYDFED-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGS--RGAKP 328
Query: 261 GLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
G+ E A+ V++ + H+ ++ K L +M+ +L D+ D
Sbjct: 329 GVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 388
Query: 317 QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
N+ + L G L+ + ++ L++ + Q I + GK F+ LA IK ++
Sbjct: 389 GNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFI-DRGKDFNL-ELA-IK-------TR 438
Query: 377 QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
I ++ L TG Q Q RAG + RL F +S R ++ G +
Sbjct: 439 IISDGLKYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRLNSPIGRDG-KLA 496
Query: 437 SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
R+L WG +CP TP+G GL+ ++ ++ + IL L
Sbjct: 497 KPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYIS-----------VGSQPSPILEFL 545
Query: 497 IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAAS 550
M +L ++ + + ++G VG+ + E+++ LR+L+ VS S
Sbjct: 546 EEWSM-ENLEEISPAAIADATKIFVNGCWVGI--HKDPEQLMNTLRKLRRQMDIIVSEVS 602
Query: 551 VIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN------------I 598
+I D E + G L K + R+I E N +
Sbjct: 603 MIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVV 662
Query: 599 ELIGPFEQ--VFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRN 656
E I E+ V + + D + TH EIHP+ +L V A++ P+ DHNQSPRN
Sbjct: 663 EYIDTLEEETVMLAMTPDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRN 722
Query: 657 MYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAV 716
YQ M KQ MG + R D + L PQ P+V T + E P G N+IVA+
Sbjct: 723 TYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAI 782
Query: 717 LAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDA---- 772
+YTGY+ ED++I+N+S+VDRG Y++ S G D+ + + ++
Sbjct: 783 ASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKG--FDQEEVFEKPTRETCQGM 840
Query: 773 -KSLHSVIDSDGLPYVGQMIHPGE----PYCSIYDKTTNSWRTNSR----------KGSE 817
+++ +D DGL G + + ++ + TN R + SE
Sbjct: 841 RHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRYTKRDCSTFLRTSE 900
Query: 818 SVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSG 877
+ VD V V + + IR R R P IGDKF+SRHGQKG C + DMPF+
Sbjct: 901 TGIVDQVMVTLNQEGY--KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFT- 957
Query: 878 VTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
G+ PD+IINPHA PSRMTI L+E + K
Sbjct: 958 CEGITPDIIINPHAIPSRMTIGHLIECLQGK 988
>gi|302488402|ref|NP_001019632.2| DNA-directed RNA polymerase II subunit RPB2 [Danio rerio]
Length = 1174
Score = 241 bits (614), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 246/933 (26%), Positives = 400/933 (42%), Gaps = 111/933 (11%)
Query: 34 MFDHCRQAKISYTGKLMADVEFQYLDAGSP---VVRERFNFGQFPVMLKTRRCHLQGADS 90
M + R ++Y+ L D+ + G ++ G+ P+ML++ C L G
Sbjct: 109 MPNEARLRNLTYSAPLYVDITKTIIKDGEEQQQTQHQKTFIGKIPIMLRSTYCLLSGLTD 168
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
+ L L E + GGYFI+NG E+V +I ++ ++ + +D + YT + R
Sbjct: 169 RDLCELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFAKKDSKYAYTGEC---R 222
Query: 151 CVRKDQS--SVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDL 199
++ S + T+ + + G + G+ + +P+ IV +AL +D
Sbjct: 223 SCLENSSRPTSTIWVSMMARGGQGVKKSAIGQRIVSTLPYIRQEVPIIIVFRALGFVSDR 282
Query: 200 EIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVI 259
+I H+ +D+ P + E VK L E + + L IG +
Sbjct: 283 DILEHIIYDFDD-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGS--RGAK 327
Query: 260 DGLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDS 315
G+ E A+ V++ + H+ ++ K L +M+ +L D+ D
Sbjct: 328 PGVTKERRIKYAKEVLQKEVLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDH 387
Query: 316 LQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPS 375
N+ + L G L+ + ++ L++ + Q I + GK F+ LA IK +
Sbjct: 388 YGNKRLDLAGPLLAFLFRGMFKNLLKEIRIYAQKFI-DRGKDFNL-ELA-IK-------T 437
Query: 376 KQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRT 435
+ I ++ L TG Q RAG + RL F +S R V+ G +
Sbjct: 438 RIISDGLKYSLATGNWGDVKKAH-QARAGVSQVLNRLTFASTLSHLRRVNSPIGRDG-KL 495
Query: 436 TSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRV 495
R+L WG +CP TP+G GL+ ++ ++ + IL
Sbjct: 496 AKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYIS-----------VGSQPSPILEF 544
Query: 496 LIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAA 549
L M +L ++ + + ++G VG+ + E+++ LR+L+ VS
Sbjct: 545 LEEWSM-ENLEEISPAAIADATKIFVNGCWVGI--HKDPEQLMNTLRKLRRQMDIIVSEV 601
Query: 550 SVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN------------ 597
S+I D E + G L K + R+I E N
Sbjct: 602 SMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKRRHIDQLKEREYNNYSWQDLVASGV 661
Query: 598 IELIGPFEQ--VFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPR 655
+E I E+ V + + D + G TH EIHP+ +L V A++ P+ DHNQSPR
Sbjct: 662 VEYIDTLEEETVMLAMTPDDLQEKGVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPR 721
Query: 656 NMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVA 715
N YQ M KQ MG + R D + L PQ P+V T + E P G N+IVA
Sbjct: 722 NTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVA 781
Query: 716 VLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDA--- 772
+ +YTGY+ ED++I+N+S+VDRG Y++ S G D+ + + ++
Sbjct: 782 IASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKG--FDQEEIFEKPTRETCQG 839
Query: 773 --KSLHSVIDSDGLPYVGQMIHPGE-----PYCSIYDKTTNSWRTNSR----------KG 815
+++ +D DGL G + GE ++ + TN R +
Sbjct: 840 MRHAIYDKLDDDGLIAPGVRV-SGEDVIIGKTVTLPENDDELDSTNRRYTKRDCSTFLRT 898
Query: 816 SESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPF 875
SE+ VD V V + + IR R R P IGDKF+SRHGQKG C + DMPF
Sbjct: 899 SETGIVDQVMVTLNQEGY--KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPF 956
Query: 876 SGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
+ G+ PD+IINPHA PSRMT+ L+E + K
Sbjct: 957 T-CEGITPDIIINPHAIPSRMTVGHLIECLQGK 988
>gi|302820918|ref|XP_002992124.1| hypothetical protein SELMODRAFT_430375 [Selaginella moellendorffii]
gi|300140050|gb|EFJ06779.1| hypothetical protein SELMODRAFT_430375 [Selaginella moellendorffii]
Length = 1440
Score = 241 bits (614), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 238/934 (25%), Positives = 395/934 (42%), Gaps = 159/934 (17%)
Query: 37 HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQ-------FPVMLKTRRCHLQGAD 89
CR ++Y+ + D+E+ G ++ + GQ PVML++ RC L G
Sbjct: 412 QCRLRDMTYSAPISVDIEYT---RGKDIITRKGKDGQGAQVIGRMPVMLRSSRCILTGKS 468
Query: 90 SQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVI 149
+L L E + GGYF++ G E+V +++ R ++I
Sbjct: 469 DAELAKLGECPLDPGGYFVVKGTEKVI-------------LIQEQLSKNR-------III 508
Query: 150 RCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYL----LPVGIVLKALVDTNDLEIFNHL 205
D S GS+ L ++GK + +P+ +V+KA+ +D EI +
Sbjct: 509 -----DSDST---------GSLSLAVHMRGKLNVFSDDVPIVVVMKAMGMESDQEIIQMV 554
Query: 206 TCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSE 265
D K+ + +P + E L + T Q L+++G + +
Sbjct: 555 GT--DPKF----AGILAP--------SMQECASLGVYTTHQALEYLGTKVRVNRQWGSKQ 600
Query: 266 SYYAVAET------VIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQ 319
+ V E V ++ VH D K + ML+++ + D+ D + N+
Sbjct: 601 TKSKVDEARDILLNVFLAHVAVHKYDFRPKCIYVALMLRRMLEAILDKECVDDRDYVGNK 660
Query: 320 EILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIG 379
+ L G L+ + ED ++ ++ ++ K + + ++ K ++ + +
Sbjct: 661 RLELAGQLLALLF----EDLFKRSCSELKSNVDRTLSKMNRASQYDVSKSLKPD---MLT 713
Query: 380 TSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-V 438
+ +E + +G + + G T RL+++ + V + F R S
Sbjct: 714 SGLENAISSGNWTVKRFR--MDKKGVTQVVSRLSYIAALGHMTRV--ASQFEKSRKVSGP 769
Query: 439 RKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIG 498
R L P WG LCP TP+GE CGL ++ + + D + D L +G
Sbjct: 770 RSLQPSQWGMLCPCDTPEGEGCGLTKNLALMTHITT-DDEEAPLID--------LCTNLG 820
Query: 499 VGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEV 558
V I L A L V+ +G ++G+ ++ +R+L+ + ++
Sbjct: 821 VEDINLLSGEEFHSKNAFL-VMFNGTILGI--HRRPQQFATLMRKLRRAG--------KI 869
Query: 559 G-YVPLSLGGAYPGLYLFTSPPKFVRPV----RNISLPSEESQNIELIG--PFEQVFMEI 611
G +V + + +Y+ + + RPV +S E G F+ E
Sbjct: 870 GEFVSIFVNEKQRCIYIASDGGRVCRPVVIADHGVSRIKEHHMKELKDGFRTFDDFLREG 929
Query: 612 RCPDGGDGGRRNAFPATHE----------EIHPTGMLSVVANLTPYSDHNQSPRNMYQCQ 661
NA A +E EI P +L V A L PY HNQSPRN YQC
Sbjct: 930 LVEYLDVNEENNALIALYEKEADSTTTHIEIEPFTILGVCAGLIPYPHHNQSPRNTYQCA 989
Query: 662 MAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTG 721
M KQ MG R D LY L PQ P++ T + D+ G NA VAV++Y+G
Sbjct: 990 MGKQAMGNIAYNQLQRIDTLLYLLVYPQRPLLTTKSIELVNYDKLGAGQNASVAVMSYSG 1049
Query: 722 YDMEDAMILNKSSVDRGM----------CHGQIYQTETIDLSDDGNKVDRGQKLFRRNKD 771
YD+EDA+++NK+S+DRG C + Y+ T+D ++ +
Sbjct: 1050 YDIEDAIVMNKASLDRGFGRCIVLKKFSCLVRKYENRTMD------------RIVAPRQH 1097
Query: 772 AKSLHSVIDSDGLPYVGQMIHPGEPYCSIYD----KTT---------NSWRTNSR--KG- 815
+ ++D DG+ VG+ I+ + + + KTT +++R + KG
Sbjct: 1098 GHATSQLLDQDGIASVGERIYDKDIFVNKESPKDVKTTFLNPLALPDSAYRPTPQRYKGP 1157
Query: 816 -SESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMP 874
ES VD V + S+ + K + RHTR P +GDKFSSRHGQKGVC + D P
Sbjct: 1158 LGESAIVDKVLLTTNESQQMVIKCQV--RHTRRPELGDKFSSRHGQKGVCGTIVEQQDFP 1215
Query: 875 FSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
F+ G+ PDLI+NPH FPSRMT+ ++E + K
Sbjct: 1216 FTE-RGVCPDLIMNPHGFPSRMTVGKMIELLGGK 1248
>gi|297673507|ref|XP_002814802.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 3
[Pongo abelii]
gi|395851371|ref|XP_003798234.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 2
[Otolemur garnettii]
gi|410038419|ref|XP_003950401.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Pan
troglodytes]
Length = 1099
Score = 241 bits (614), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 245/932 (26%), Positives = 401/932 (43%), Gaps = 109/932 (11%)
Query: 34 MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVR---ERFNFGQFPVMLKTRRCHLQGADS 90
M + R ++Y+ L D+ + G ++ ++ G+ P+ML++ C L G
Sbjct: 34 MPNEARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTD 93
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
+ L L E + GGYFI+NG E+V +I ++ ++ + +D + YT + R
Sbjct: 94 RDLCELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFAKKDSKYAYTGEC---R 147
Query: 151 CVRKDQS--SVTLKLYYLLNGSV---------RLGFWLQGKEYLLPVGIVLKALVDTNDL 199
++ S + T+ + L G R+ L + +P+ IV +AL +D
Sbjct: 148 SCLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDR 207
Query: 200 EIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVI 259
+I H+ +++ P + E VK L E + + L IG +
Sbjct: 208 DILEHIIYDFED-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGS--RGAK 252
Query: 260 DGLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDS 315
G+ E A+ V++ + H+ ++ K L +M+ +L D+ D
Sbjct: 253 PGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDH 312
Query: 316 LQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPS 375
N+ + L G L+ + ++ L++ + Q I + GK F+ LA IK +
Sbjct: 313 YGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFI-DRGKDFNL-ELA-IK-------T 362
Query: 376 KQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRT 435
+ I ++ L TG Q Q RAG + RL F +S R ++ G +
Sbjct: 363 RIISDGLKYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRLNSPIGRDG-KL 420
Query: 436 TSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRV 495
R+L WG +CP TP+G GL+ ++ ++ + IL
Sbjct: 421 AKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYIS-----------VGSQPSPILEF 469
Query: 496 LIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAA 549
L M +L ++ + + ++G VG+ + E+++ LR+L+ VS
Sbjct: 470 LEEWSM-ENLEEISPAAIADATKIFVNGCWVGI--HKDPEQLMNTLRKLRRQMDIIVSEV 526
Query: 550 SVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN------------ 597
S+I D E + G L K + R+I E N
Sbjct: 527 SMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGV 586
Query: 598 IELIGPFEQ--VFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPR 655
+E I E+ V + + D + TH EIHP+ +L V A++ P+ DHNQSPR
Sbjct: 587 VEYIDTLEEETVMLAMTPDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPR 646
Query: 656 NMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVA 715
N YQ M KQ MG + R D + L PQ P+V T + E P G N+IVA
Sbjct: 647 NTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVA 706
Query: 716 VLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDA--- 772
+ +YTGY+ ED++I+N+S+VDRG Y++ S G D+ + + ++
Sbjct: 707 IASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKG--FDQEEVFEKPTRETCQG 764
Query: 773 --KSLHSVIDSDGLPYVGQMIHPGE----PYCSIYDKTTNSWRTNSR----------KGS 816
+++ +D DGL G + + ++ + TN R + S
Sbjct: 765 MRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRYTKRDCSTFLRTS 824
Query: 817 ESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFS 876
E+ VD V V + + IR R R P IGDKF+SRHGQKG C + DMPF+
Sbjct: 825 ETGIVDQVMVTLNQEGY--KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFT 882
Query: 877 GVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
G+ PD+IINPHA PSRMTI L+E + K
Sbjct: 883 -CEGITPDIIINPHAIPSRMTIGHLIECLQGK 913
>gi|255073731|ref|XP_002500540.1| predicted protein [Micromonas sp. RCC299]
gi|226515803|gb|ACO61798.1| predicted protein [Micromonas sp. RCC299]
Length = 1178
Score = 241 bits (614), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 239/905 (26%), Positives = 383/905 (42%), Gaps = 134/905 (14%)
Query: 71 FGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRS---------VIL 121
FG+ P+ML+++ C L ++L L E + GGYFI+NG E+V + +
Sbjct: 156 FGKVPIMLRSQYCSLHDHTDKELTELGECPYDEGGYFIINGSEKVLIAQEKMSTNHVYVF 215
Query: 122 PKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKE 181
K+ M + R E A SS +L + G
Sbjct: 216 EKRQPSKYMWVAECRSSPESGARAA----------SSCMARLCHAPGTKDEAGVISVTIP 265
Query: 182 YL---LPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQD 238
Y+ +P+ +V +AL D +I HL Y E + L + + + + QD
Sbjct: 266 YIRTEIPLFVVFRALGFVADKDILEHLV------YDFEDHEMMQLLRNSIEEAQVIQSQD 319
Query: 239 LSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDN----NDKFNLLI 294
++L IG+ V G+ A +++ + H+ N K L
Sbjct: 320 VAL-------DFIGKRGSAV--GVTRPKRIQYAREILQKELLPHVGVNEGCETKKAYFLG 370
Query: 295 FMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENN 354
+++ +L D+ D N+ + L G LI + ++ + K +L ++
Sbjct: 371 YIVNRLLLCALGRKKEDDRDHFGNKRMDLSGPLIAMLFRQLFRK-VTKDVRLYSQRCIDS 429
Query: 355 GKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNF 414
GK LA +K +K I + ++ L TG Q D+ RAG + RL+F
Sbjct: 430 GKDIQL-TLA-VK-------AKTITSGLKYSLATGNWGAQGAQDI--RAGVSQVLNRLSF 478
Query: 415 LRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVAS 474
+S R ++ G + R+L WG +CP TP+G+ GL+ +++ C V+
Sbjct: 479 SSTLSHLRRLNSPIGREG-KLAKPRQLHNSHWGMVCPAETPEGQAVGLVKNLSLMCLVSV 537
Query: 475 YYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLS---VLLDGRVVGVIPS 531
S + + S+ L + P +++ + ++G VGV
Sbjct: 538 GSPSAPLLEFLEEW---------------SMENLEEISPSVIVNATKIFVNGVWVGV--H 580
Query: 532 SEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPV-----R 586
E ++V LR L+ I EVG V A L L+T + +RP+
Sbjct: 581 REPAQLVQTLRNLRRKLDITI----EVGVVH---DIALRELRLYTDYGRCIRPLFIVEDN 633
Query: 587 NISLPSEESQNI---ELIGPFEQVFMEIRCPDGGD-----------------GGRRNAFP 626
++ + ++ Q + E+ G + C + D G R NA P
Sbjct: 634 HLVIKKKDIQMLYEKEITGYTWNDLVATGCIEYVDTEEEETTMIAMTIDELVGQRINAEP 693
Query: 627 A------THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQ 680
TH EIHP+ +L + A++ P+ DHNQSPRN YQ M KQ MG V + R D
Sbjct: 694 GGVKHMYTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGMYVTNFQIRMDT 753
Query: 681 KLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMC 740
Y L PQ P+V T E P G N +V ++ YTGY+ ED++I+N+SS+DRG+
Sbjct: 754 LAYVLFYPQKPLVTTRAMEHLHFRELPAGVNVVVGIMCYTGYNQEDSVIMNQSSIDRGLF 813
Query: 741 HGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAK-----SLHSVIDSDGLPYVGQMIH--- 792
Y++ + G+ ++L R ++D + +D DGL G +
Sbjct: 814 RSIFYRSFKDEEKKQGSLTK--EELERPSRDTTLGMRHGTYDKLDDDGLICPGTRVSGED 871
Query: 793 ---------PGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFR 843
P + ++ + T + K SE+ +D V + N + L + IR R
Sbjct: 872 IIIGKTSPLPEDDPSAVSKRFTKRDCSTGMKNSETGIIDQVLL-TTNDQGL-RFVKIRVR 929
Query: 844 HTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLE 903
R P +GDKFSSRHGQKG + DMPF+ G+ PD+I+NPHA PSRMTI L+E
Sbjct: 930 SCRTPQVGDKFSSRHGQKGTIGMTYTQEDMPFT-CEGIVPDIIVNPHAIPSRMTIGQLVE 988
Query: 904 SVAAK 908
+ K
Sbjct: 989 CLMGK 993
>gi|324120652|dbj|BAJ78717.1| RNA polymerase II second largest subunit [Bemisia tabaci]
Length = 1176
Score = 241 bits (614), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 251/946 (26%), Positives = 406/946 (42%), Gaps = 136/946 (14%)
Query: 34 MFDHCRQAKISYTGKLMADVEFQYL-DAGSPVV--RERFNFGQFPVMLKTRRCHLQGADS 90
M + R ++Y+ L D+ + D PVV E+ G+ P+ML++ C L G
Sbjct: 109 MPNEARLRNLTYSAPLYVDITKTVIKDGQEPVVTEHEKSFIGKIPIMLRSTFCLLSGLTD 168
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
+ L L E + GGYFI+NG E+V +I ++ ++ S +D + Y KA +
Sbjct: 169 RDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFSMKDGKYAY--KAEIRS 223
Query: 151 CVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
C+ + + TL + + G + G+ + +P+ IV +AL D +
Sbjct: 224 CLEHSSRPTSTLWVNMMARGGQSIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRD 283
Query: 201 IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
I H+ +D+ P + E VK L E + + L IG +
Sbjct: 284 ILEHIIYDFDD-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGA--RGARP 328
Query: 261 GLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
G+ + A +++ + H+ ++ K L +M+ +L D+ D
Sbjct: 329 GVTKDKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 388
Query: 317 QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
N+ + L G L+ + ++ +++ + Q I + GK F+ LA IK +K
Sbjct: 389 GNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFI-DRGKDFNM-ELA-IK-------TK 438
Query: 377 QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
I + L TG Q Q RAG + RL F +S R V+ G +
Sbjct: 439 IITDGLRYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRVNSPIGRDG-KLA 496
Query: 437 SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
R+L WG +CP TP+G GL+ ++ ++ + IL L
Sbjct: 497 KPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYIS-----------VGSQPSPILEFL 545
Query: 497 IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAAS 550
M +L ++ S + ++G VG+ + E+++ LR+L+ VS S
Sbjct: 546 EEWSM-ENLEEIAPSAIADATKIFVNGCWVGI--HRDPEQLMGTLRKLRRQMDIIVSEVS 602
Query: 551 VIPD--DLEVGYVPLSLGGAYPGLYLFTSPPKFVRP---VRNISLPSEESQN-------- 597
+I D D E+ ++T + RP V N +L + S
Sbjct: 603 IIRDIRDREI--------------RIYTDAGRICRPLLIVENQTLLLKRSHVDNLKQRDY 648
Query: 598 -------------IELIGPFEQ-VFMEIRCPDGGDGGRRNAFPAT--HEEIHPTGMLSVV 641
+E I E+ M P+ + A+ T H EIHP +L V
Sbjct: 649 NNYKWQELVSSGVVEYIDTLEEETTMIAMSPEDLRQDKEYAYCTTYTHCEIHPAMILGVC 708
Query: 642 ANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKY 701
A++ P+ DHNQSPRN YQ M KQ MG + R D + L P P+V T +
Sbjct: 709 ASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNYHVRMDTLAHVLYYPHKPLVTTRSMEYL 768
Query: 702 GIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDR 761
E P G N+IVA+L YTGY+ ED++ILN S+V+RG ++ + S+ D+
Sbjct: 769 RFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFFR--SYKDSESKRIGDQ 826
Query: 762 GQKLFRRNKDA-----KSLHSVIDSDGL-----------PYVGQMIHPGEPYCSIYDKTT 805
++ + N+ +++ +D DG+ +G+ I E + T
Sbjct: 827 EEQFEKPNRSTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIGKTITLPENDDELEGTTK 886
Query: 806 NSWRTNSR---KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKG 862
+ ++ + SE+ VD V + + NS+ + IR R R P IGDKF+SRHGQKG
Sbjct: 887 RYSKRDASTFLRNSETGIVDQVMLTL-NSEGY-KFCKIRVRSVRIPQIGDKFASRHGQKG 944
Query: 863 VCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
C + DMPF+ G+ PD+IINPHA PSRMTI L+E + K
Sbjct: 945 TCGIQYRQEDMPFT-CEGLAPDIIINPHAIPSRMTIGHLIECLQGK 989
>gi|154707850|ref|NP_001092552.1| DNA-directed RNA polymerase II subunit RPB2 [Bos taurus]
gi|73975053|ref|XP_532382.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 2
[Canis lupus familiaris]
gi|301765482|ref|XP_002918158.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like
[Ailuropoda melanoleuca]
gi|410957577|ref|XP_003985402.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 1
[Felis catus]
gi|426231739|ref|XP_004009895.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Ovis aries]
gi|148744083|gb|AAI42268.1| POLR2B protein [Bos taurus]
gi|296486557|tpg|DAA28670.1| TPA: DNA directed RNA polymerase II polypeptide B [Bos taurus]
Length = 1174
Score = 241 bits (614), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 244/931 (26%), Positives = 399/931 (42%), Gaps = 107/931 (11%)
Query: 34 MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFN---FGQFPVMLKTRRCHLQGADS 90
M + R ++Y+ L D+ + G ++ + G+ P+ML++ C L G
Sbjct: 109 MPNEARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTD 168
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
+ L L E + GGYFI+NG E+V +I ++ ++ + +D + YT +
Sbjct: 169 RDLCELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFAKKDSKYAYTGECR--S 223
Query: 151 CVRKD-QSSVTLKLYYLLNGSV---------RLGFWLQGKEYLLPVGIVLKALVDTNDLE 200
C+ + + T+ + L G R+ L + +P+ IV +AL +D +
Sbjct: 224 CLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRD 283
Query: 201 IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
I H+ +++ P + E VK L E + + L IG +
Sbjct: 284 ILEHIIYDFED-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGS--RGAKP 328
Query: 261 GLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
G+ E A+ V++ + H+ ++ K L +M+ +L D+ D
Sbjct: 329 GVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 388
Query: 317 QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
N+ + L G L+ + ++ L++ + Q I + GK F+ LA IK ++
Sbjct: 389 GNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFI-DRGKDFNL-ELA-IK-------TR 438
Query: 377 QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
I ++ L TG Q Q RAG + RL F +S R ++ G +
Sbjct: 439 IISDGLKYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRLNSPIGRDG-KLA 496
Query: 437 SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
R+L WG +CP TP+G GL+ ++ ++ + IL L
Sbjct: 497 KPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYIS-----------VGSQPSPILEFL 545
Query: 497 IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAAS 550
M +L ++ + + ++G VG+ + E+++ LR+L+ VS S
Sbjct: 546 EEWSM-ENLEEISPAAIADATKIFVNGCWVGI--HKDPEQLMNTLRKLRRQMDIIVSEVS 602
Query: 551 VIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN------------I 598
+I D E + G L K + R+I E N +
Sbjct: 603 MIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVV 662
Query: 599 ELIGPFEQ--VFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRN 656
E I E+ V + + D + TH EIHP+ +L V A++ P+ DHNQSPRN
Sbjct: 663 EYIDTLEEETVMLAMTPDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRN 722
Query: 657 MYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAV 716
YQ M KQ MG + R D + L PQ P+V T + E P G N+IVA+
Sbjct: 723 TYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAI 782
Query: 717 LAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDA---- 772
+YTGY+ ED++I+N+S+VDRG Y++ S G D+ + + ++
Sbjct: 783 ASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKG--FDQEEVFEKPTRETCQGM 840
Query: 773 -KSLHSVIDSDGLPYVGQMIHPGE----PYCSIYDKTTNSWRTNSR----------KGSE 817
+++ +D DGL G + + ++ + TN R + SE
Sbjct: 841 RHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELEGTNRRYTKRDCSTFLRTSE 900
Query: 818 SVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSG 877
+ VD V V + + IR R R P IGDKF+SRHGQKG C + DMPF+
Sbjct: 901 TGIVDQVMVTLNQEGY--KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFT- 957
Query: 878 VTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
G+ PD+IINPHA PSRMTI L+E + K
Sbjct: 958 CEGITPDIIINPHAIPSRMTIGHLIECLQGK 988
>gi|324120648|dbj|BAJ78715.1| RNA polymerase II second largest subunit [Cryptotympana facialis]
Length = 1175
Score = 240 bits (613), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 248/944 (26%), Positives = 402/944 (42%), Gaps = 132/944 (13%)
Query: 34 MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFN---FGQFPVMLKTRRCHLQGADS 90
M + R ++Y+ L D+ + G + + G+ P+ML++ C L G
Sbjct: 109 MPNEARLRNLTYSAPLYVDITKTIVKEGEDPIETQHQKSFIGKIPIMLRSTYCLLNGLTD 168
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
+ L L E + GGYFI+NG E+V +I ++ ++ S +D + Y KA +
Sbjct: 169 RDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFSMKDGKFAY--KAEIRS 223
Query: 151 CVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
C+ + + TL + + G + G+ + +P+ IV +AL D +
Sbjct: 224 CLEHSSRPTSTLWVNMMARGGQSIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRD 283
Query: 201 IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
I H+ +D+ P + E VK L E + + L IG +
Sbjct: 284 ILEHIIYDFDD-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGA--RGARP 328
Query: 261 GLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
G+ E A +++ + H+ ++ K L +M+ +L D+ D
Sbjct: 329 GVTKEKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 388
Query: 317 QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
N+ + L G L+ + ++ +++ + Q I + GK F+ LA IK +K
Sbjct: 389 GNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFI-DRGKDFN-LELA-IK-------TK 438
Query: 377 QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
I + L TG Q Q RAG + RL F +S R V+ G +
Sbjct: 439 IITDGLRYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRVNSPIGRDG-KLA 496
Query: 437 SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
R+L WG +CP TP+G GL+ ++ ++ + IL L
Sbjct: 497 KPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYIS-----------VGSQPSPILEFL 545
Query: 497 IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAAS 550
M +L ++ S + ++G VG+ + E+++ LR+L+ VS S
Sbjct: 546 EEWSM-ENLEEIAPSAIADATKIFVNGCWVGI--HRDPEQLMGTLRKLRRQMDIIVSEVS 602
Query: 551 VIPD--DLEVGYVPLSLGGAYPGLYLFTSPPKFVRPV------------RNISLPSEESQ 596
+I D D E+ ++T + RP+ R+I E
Sbjct: 603 IIRDIRDREI--------------RIYTDAGRICRPLLIVENGSLLLKKRHIDNLKERDY 648
Query: 597 N------------IELIGPF-EQVFMEIRCPDGGDGGRRNAFPA--THEEIHPTGMLSVV 641
N +E I E+ M PD + A+ TH EIHP +L V
Sbjct: 649 NNYGWQVLVSSGVVEYIDTLEEETTMIAMSPDDLRQDKEYAYCTTYTHCEIHPAMILGVC 708
Query: 642 ANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKY 701
A++ P+ DHNQSPRN YQ M KQ MG + R D + L P P+V T +
Sbjct: 709 ASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYL 768
Query: 702 GIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT-ETIDLSDDGNKVD 760
E P G N+IVA+ YTGY+ ED++ILN S+V+RG +++ + + G++ +
Sbjct: 769 RFRELPAGINSIVAIACYTGYNQEDSVILNASAVERGFFRSVFFRSYKDAESKRVGDQEE 828
Query: 761 RGQKLFRRNKDA--KSLHSVIDSDGLPYVGQMIHPGE----PYCSIYDKTTNSWRTNSR- 813
+ +K R+ +++ +D DG+ G + + ++ D T R
Sbjct: 829 QFEKPTRQTCQGMRNAIYDKLDDDGIIAPGLRVSGDDVVIGKTMTLPDNEDELEGTTKRY 888
Query: 814 ---------KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVC 864
+ SE+ VD V + + NS+ + IR R R P IGDKF+SRHGQKG C
Sbjct: 889 TKRDASTFLRNSETGIVDQVMLTL-NSEGY-KFCKIRVRSVRIPQIGDKFASRHGQKGTC 946
Query: 865 SQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
+ DMPF+ G+ PD+IINPHA PSRMTI L+E + K
Sbjct: 947 GIQYRQEDMPFT-CEGISPDIIINPHAIPSRMTIGHLIECLQGK 989
>gi|401426102|ref|XP_003877535.1| DNA-directed RNA polymerase II subunit 2,putative [Leishmania
mexicana MHOM/GT/2001/U1103]
gi|322493781|emb|CBZ29070.1| DNA-directed RNA polymerase II subunit 2,putative [Leishmania
mexicana MHOM/GT/2001/U1103]
Length = 1185
Score = 240 bits (613), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 242/942 (25%), Positives = 419/942 (44%), Gaps = 104/942 (11%)
Query: 18 HHIESFDYMLDEGLSEMF-DHCRQAKISY--TGKLMADVEFQYLDAGSP--VVRERFNFG 72
H +S Y L +F + CR ++Y ++ VE + A +P G
Sbjct: 110 HQTQS--YFAGGSLPPLFPNECRLRDMTYDAQAQVTLGVELYHPHADTPHDTFLRNVELG 167
Query: 73 QFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVR 132
+ P+MLK+ RC+L G D +L L E + GGYF++NG E+V ++ ++ + V
Sbjct: 168 RIPIMLKSMRCNLSGKDEDELPRLNECPHDQGGYFVINGTEKV----LIAQERQAANHVY 223
Query: 133 SSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLL---NGSVRLGFWLQGKEYLLPVGIV 189
+ R + K++V + K ++ + Y +G L + + +P+ ++
Sbjct: 224 TFSRQKGLLCEVKSIVEGSLNKPRTLQIIMQYKNKGPGSGFENLMCRVAQMDETIPLFVL 283
Query: 190 LKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQ 249
+A+ D EI T D K + E ++ +++ L + TR + L
Sbjct: 284 FRAMDMVADKEILQ--TVVPDLK---------DTAMLELLRGSMSDASTLQIFTREEALG 332
Query: 250 HIGEHF--QPVIDGLQSESYYAVAETVIRDYIFVHL----NDNNDKFNLLIFMLQKLFSL 303
+IG Q + LQ E AE+++ + H+ + N K + +M+ KL +
Sbjct: 333 YIGRRLGKQDAMANLQRE-----AESLLMRDLLPHMGTDPSANRTKCLYMGYMVHKLLLV 387
Query: 304 VDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNL 363
+ D L ++ I + G L+T+ L+ L ++ K +QD N F F +
Sbjct: 388 ALGRHEETDRDFLGHKRIDVAGTLLTVQLQTFLAQVRKEMIKTLQDHAANPRGVFSFGRV 447
Query: 364 ANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRA 423
+ K++ + + T LKTG + T G RL + +S R
Sbjct: 448 IH-SKLITDGLRRCLATGNFGDLKTGNIKT----------GVAQTLNRLTYSSSLSNLRR 496
Query: 424 VHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIR 483
+ + A + T R L WG++CPV TP+G GLL ++ C + SRG
Sbjct: 497 IQNPIA-ASSKATRPRNLHCTQWGYICPVETPEGGSIGLLKNVALMCLM-----SRGT-- 548
Query: 484 DFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRR 543
D +++ ++ + G I L + V V ++G ++GV E+++ LR
Sbjct: 549 DHAEVVQAVQARIDGFRTI----GLEDTADVRVARVFVNGTMIGV--DRNPERLLHDLRT 602
Query: 544 LKVSA-----ASVIPD--DLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEES- 595
+ + S++ D D E+ + P K + L SE++
Sbjct: 603 RRRNGELSNEVSIVRDIRDREIRVFSDAGRCLRPLFVAENCHLKLRKSGMRDLLVSEKAG 662
Query: 596 --QNIELIGPFEQVFMEIRCPDGGDGGRRNAFPA--------THEEIHPTGMLSVVANLT 645
++I ++ ++E+ + D P+ +H E+ P+ +L + A++
Sbjct: 663 GKKSISWSTALKKGYVELIDCEEEDSLLIAMTPSEVEKNYYYSHCEMDPSMILGICASII 722
Query: 646 PYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDE 705
PY +HNQSPRN YQ M KQ MG R D + L PQ P+VRT T ++
Sbjct: 723 PYPNHNQSPRNTYQSAMGKQAMGIYASNFNMRMDTTAHVLFYPQKPLVRTKAMTYMHSND 782
Query: 706 YPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKL 765
P G NA+VA+ Y+GY+ ED++I+++S+V+RG ++ + ++ K D +
Sbjct: 783 LPAGHNAVVAISCYSGYNQEDSIIMSRSAVERGFFRSAFWR--SFKAKEERQKRDALETF 840
Query: 766 FRRNKDA----KSLHSVIDSDGLPYVGQMIHPGE---------PYCSIYDKTTNSWRTNS 812
+++ ++ +S +D+DGL G + G+ P + TT + +
Sbjct: 841 ENPDREVCRVKRADYSKLDTDGLIKPGMRVLGGDVVVGKTIPLPEADLEKLTTGNTKITK 900
Query: 813 R------KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQ 866
R + +E VD V + M N+ + ++ R + P IGDKF SRHGQKG
Sbjct: 901 RDASITSRATEKGVVDKVMLTMNNNDRFTK---VKIRTIKIPNIGDKFCSRHGQKGTNGI 957
Query: 867 LWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
+ DMPF+ G+ PDLIINPHA PSRMT+A L+E++A K
Sbjct: 958 QFRQEDMPFNR-DGIVPDLIINPHAIPSRMTVAHLIETLAGK 998
>gi|19074634|ref|NP_586140.1| DNA-DIRECTED RNA POLYMERASE II SECOND LARGEST SUBUNIT
[Encephalitozoon cuniculi GB-M1]
gi|51702025|sp|Q8SR75.1|RPB2_ENCCU RecName: Full=DNA-directed RNA polymerase II subunit RPB2;
Short=RNA polymerase II subunit 2; Short=RNA polymerase
II subunit B2
gi|19069276|emb|CAD25744.1| DNA-DIRECTED RNA POLYMERASE II SECOND LARGEST SUBUNIT
[Encephalitozoon cuniculi GB-M1]
Length = 1141
Score = 240 bits (613), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 246/929 (26%), Positives = 403/929 (43%), Gaps = 120/929 (12%)
Query: 36 DHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFN---FGQFPVMLKTRRCHLQGADSQK 92
+ R ++Y L DV + L V + +++ FG PVML++ C L G +
Sbjct: 93 NEARIRDLTYASPLFIDVTKETLSELGVVDKHKYSRVPFGSLPVMLRSSYCVLYGLGDKD 152
Query: 93 LVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCV 152
L+ L E + GGYFI+NG E+V I+ ++ + V + + YT A IR V
Sbjct: 153 LIDLGECPYDQGGYFIVNGSEKV----IVAQERMASNTVYVFKKAQPATYTHYAE-IRSV 207
Query: 153 ----RKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCC 208
++ S++++KL G +R+ L ++ +P+ ++ +AL +D EI +H+
Sbjct: 208 PEKSSRNPSTLSMKLCRS-PGVIRVSLPLVKQD--VPLFVLYRALGFLSDKEIIDHILYE 264
Query: 209 YDE------KYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGL 262
DE K E+G V VQD ++ L +IG+ P+ G
Sbjct: 265 DDEEMFELLKESIEEGTV---------------VQDQNVA-----LDYIGKRSAPI--GT 302
Query: 263 QSESYYAVAETVIRDYIFVHLNDN----NDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQN 318
E +A+ ++ + H+ K + +++Q+L + D+ D
Sbjct: 303 PQEKRIVMAKDLLAKEVLPHIGTQEFCETKKAYFIGYIVQRLLLVALGRRNPDDRDHYGK 362
Query: 319 QEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQI 378
+ + L G L+ + + + +Q IEN + FN+A K + I
Sbjct: 363 KRMDLSGPLLASLFRTLFKKLCVDTTRHMQKCIENGRE----FNIALGLK------ASII 412
Query: 379 GTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSV 438
L TG Q +Q RAG R NF+ +S R V+ G + +
Sbjct: 413 TQGFRYALATGNWGDQAKA-MQTRAGVAQVLNRYNFVSTLSHLRRVNTPIEKEG-KLAAP 470
Query: 439 RKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIG 498
R+L WG +CP TP+G+ CGL+ +++ + S S G + +F L
Sbjct: 471 RQLHNTHWGMVCPAETPEGQACGLVKNLSLMAYI-SVGSSSGPLVEF----------LEE 519
Query: 499 VGMIPSLPKLVKSGPPAVLSVLLDGRVVGV--IPSSEIEKVVAHLRRLKVSAASVIPDDL 556
G + SL ++ S A + ++G VG+ P I+ + R L++ I D+
Sbjct: 520 CG-VESLEEISTSQLDAATKIFVNGVWVGIHSDPVGLIKSLKLLRRSLEMDKEVSIVRDI 578
Query: 557 EVGYVPLSLGGAYPGL-YLFTSPPKFV---RPVRNISLPSEESQNIELIGPFEQVFMEIR 612
+ + P L K V +R + + N+ G E F+++
Sbjct: 579 REKEIRVQSDAGRPCRPLLVVKDNKLVITAEDIRKLKRGEIKWDNLVTSGFIE--FLDVE 636
Query: 613 -------------CPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQ 659
D + TH EIHP +L + A+ P+ DHNQSPRN YQ
Sbjct: 637 EEEMSMIAMNTKILADESRNSSDVSVSYTHCEIHPALILGICASTIPFPDHNQSPRNTYQ 696
Query: 660 CQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAY 719
M KQ MG R D L PQ P+V T + E P+G NA+VA+ Y
Sbjct: 697 SAMGKQAMGIYATNFLLRMDTLSNILFYPQKPLVTTKSMEYLRFKELPSGQNALVAIACY 756
Query: 720 TGYDMEDAMILNKSSVDRGMCHGQIYQTETID-------LSDDGNKVDRGQKLFRRNKDA 772
+GY+ ED++I+N+S++DRG+ Y+T T ++++ K RG L +N +
Sbjct: 757 SGYNQEDSIIMNQSAIDRGLFRSFFYRTYTDQESMSRPGVNEEFCKPSRGAVLRMKNLN- 815
Query: 773 KSLHSVIDSDGL-----------PYVGQMIHPGEPYCSIYDKTTNSWRTNSR--KGSESV 819
++ +D DGL +G++ +P S + ++ +S + +E+
Sbjct: 816 ---YNKLDDDGLISPGTRVTGDDVLIGKITPILDPERSTKEAPVYVYKDSSTAMRRTETG 872
Query: 820 FVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVT 879
VD V V K+ + ++ R R P +GDKF+SRH QKG DMPF+
Sbjct: 873 IVDTVIVTNKDGYKF---SKVKVRSGRIPQMGDKFASRHAQKGTIGITLRQEDMPFTS-E 928
Query: 880 GMRPDLIINPHAFPSRMTIAMLLESVAAK 908
G+ PD+IINPHA PSRMTI L+E + K
Sbjct: 929 GIVPDIIINPHAIPSRMTIGHLIECLLGK 957
>gi|320101550|ref|YP_004177142.1| DNA-directed RNA polymerase subunit B' ;DNA-directed RNA polymerase
subunit B' [Desulfurococcus mucosus DSM 2162]
gi|319753902|gb|ADV65660.1| DNA-directed RNA polymerase, subunit B' ;DNA-directed RNA
polymerase, subunit B' [Desulfurococcus mucosus DSM
2162]
Length = 1165
Score = 240 bits (613), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 259/1009 (25%), Positives = 425/1009 (42%), Gaps = 177/1009 (17%)
Query: 15 LVRHHIESFDYMLDEGLSEMFDHCRQAKISYTGKLM-----------------------A 51
LVR H++S++ L E L + + R+ +I+ +++
Sbjct: 26 LVRQHLDSYERFLKELLPSILEEFREIRIAEKTRIVIEKYRVDEPKWTSIEGIEESKSPM 85
Query: 52 DVEFQYLDAGSPV------------VRER-FNFGQFPVMLKTRRCHLQGADSQKLVSLKE 98
+ + L +PV RE+ PVMLK+ L ++LV++ E
Sbjct: 86 ECRLRNLTYATPVYVTVRIEDESGYTREQELKLMDLPVMLKSSIDPLSKLTPEELVAMGE 145
Query: 99 EAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSS 158
+ + GGYFI+NG E+ VI+ +++ + + T A V R +S
Sbjct: 146 DPRDPGGYFIINGSEK----VIVAQEDLASNNIIVDAMPEGSSVTHVAKVTSVARGRRSQ 201
Query: 159 VTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIF----------NHLTCC 208
+ ++ +G F QG ++ P +++ AL ++ EI NHL
Sbjct: 202 LVIERRK--DGVFYASF--QGHKF--PAVMLMVALGLASEAEILYATSLKPEVHNHLLPS 255
Query: 209 YDE------KYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGL 262
+ K + +GA + + + V+ + L I F I G
Sbjct: 256 IIQIQEVLPKLEIPEGASEEEVERLKEEYRRRVVE--------EALDFIASKF---IIGK 304
Query: 263 QSESYYAVAETVIRDYIFVHLNDN---NDKFNLLIF---MLQKLFSLVDHTSVSDNPDSL 316
E A+ ++ + + H+ + + +F M+ ++ L D+ D
Sbjct: 305 PREERILRAQRLLDERLLPHIGTDPSPETRLRKAVFIGQMISRIIELYLGYRSPDDKDHY 364
Query: 317 QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
+N+ + L G ++ L+ + + R+ K+ ++ ++ K ++K V + PS
Sbjct: 365 RNKRLKLAGDMLATLLRAAIMGFSREIKEGVEKQLAKTRK-------VDLKMVFK--PS- 414
Query: 377 QIGTSIETMLKTGRL--ATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLR 434
+ T RL A TG R G + +R N L +S R V + G
Sbjct: 415 ---------IITDRLLHAMATGNWPGGRTGVSQLLDRTNMLSTLSHLRRVVSPLA-RGQP 464
Query: 435 TTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILR 494
R+L WG +CP TP+G GL+ ++ V+ D + I
Sbjct: 465 HFEARELHGTQWGRMCPFETPEGANIGLVKNLALMTNVSVGVDDK-----------EIEL 513
Query: 495 VLIGVGMIP------------SLPKLVKSGPPAVLS----------VLLDGRVVGVIPS- 531
+L +G++P + +++ A + V L+G++VG +
Sbjct: 514 LLYRIGVVPLVSINTGDKSYKGILDIIREDVSAAVELSEKYSGWSKVFLNGKLVGYHRNG 573
Query: 532 SEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPG------LYLFTSPPKFVRPV 585
E+ + + LRR ++ V + GYV + PG + + PK R
Sbjct: 574 EELARAIRELRRKGKISSEVNVAHINSGYVDEVVVNTDPGRIRRPLIVVENGKPKLTR-- 631
Query: 586 RNISLPSE---------ESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIHPTG 636
++ + E + IE + P E+ I G G TH EI
Sbjct: 632 EHVKMLEEGRLGFEDLVKQGIIEYLDPDEEENAYIALEPGSVGAEH-----THMEIWIPA 686
Query: 637 MLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTN 696
+L + A++ PY +HNQSPRNMYQ MAKQ++G + R D + + L PQ P+V+T
Sbjct: 687 ILGITASIIPYPEHNQSPRNMYQSAMAKQSLGLYAANFQRRMDTRGHFLHYPQKPLVQTR 746
Query: 697 TYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT-ETIDLSDD 755
G +E P G N +VAVL YTGY+MEDA+ILNKSSVDRG+ ++ T++
Sbjct: 747 AMDVIGYNERPAGQNMVVAVLTYTGYNMEDALILNKSSVDRGLARSTFFRLYTTVEYKYP 806
Query: 756 GNKVD------------RGQKLFRR-NKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYD 802
G D RGQK + + +D + G +G++ P Y+
Sbjct: 807 GGIQDEITIPSTNIRGYRGQKAYEKLEEDGIVAPETPVTGGDVLIGKISPPRFLSAQEYE 866
Query: 803 KTTNSWRTNSR---KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHG 859
+ R ++ + E VD V + M + N + +R R R P +GDKF+SRHG
Sbjct: 867 VGSTLTRQDTSVVMRHEEKGVVDTVLITMDSEGN--KLIKVRVRDLRIPELGDKFASRHG 924
Query: 860 QKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
QKGV L P DMPF+ G+ PDLIINPHAFPSRMT+A L+ES+A K
Sbjct: 925 QKGVVGLLVPQYDMPFTE-EGVVPDLIINPHAFPSRMTVAQLMESIAGK 972
>gi|397469837|ref|XP_003806546.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Pan paniscus]
Length = 1226
Score = 240 bits (613), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 245/929 (26%), Positives = 400/929 (43%), Gaps = 103/929 (11%)
Query: 34 MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVR---ERFNFGQFPVMLKTRRCHLQGADS 90
M + R ++Y+ L D+ + G ++ ++ G+ P+ML++ C L G
Sbjct: 161 MPNEARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTD 220
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
+ L L E + GGYFI+NG E+V +I ++ ++ + +D + YT +
Sbjct: 221 RDLCELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFAKKDSKYAYTGECR--S 275
Query: 151 CVRKD-QSSVTLKLYYLLNGSV---------RLGFWLQGKEYLLPVGIVLKALVDTNDLE 200
C+ + + T+ + L G R+ L + +P+ IV +AL +D +
Sbjct: 276 CLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRD 335
Query: 201 IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
I H+ +++ P + E VK L E + + L IG +
Sbjct: 336 ILEHIIYDFED-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGS--RGAKP 380
Query: 261 GLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
G+ E A+ V++ + H+ ++ K L +M+ +L D+ D
Sbjct: 381 GVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 440
Query: 317 QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
N+ + L G L+ + ++ L++ + Q I + GK F+ LA IK ++
Sbjct: 441 GNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFI-DRGKDFNL-ELA-IK-------TR 490
Query: 377 QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
I ++ L TG Q Q RAG + RL F +S R ++ G +
Sbjct: 491 IISDGLKYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRLNSPIGRDG-KLA 548
Query: 437 SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
R+L WG +CP TP+G GL+ ++ ++ + IL L
Sbjct: 549 KPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYIS-----------VGSQPSPILEFL 597
Query: 497 IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAAS 550
M +L ++ + + ++G VG+ + E+++ LR+L+ VS S
Sbjct: 598 EEWSM-ENLEEISPAAIADATKIFVNGCWVGI--HKDPEQLMNTLRKLRRQMDIIVSEVS 654
Query: 551 VIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN------------I 598
+I D E + G L K + R+I E N +
Sbjct: 655 MIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVV 714
Query: 599 ELIGPFEQ--VFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRN 656
E I E+ V + + D + TH EIHP+ +L V A++ P+ DHNQSPRN
Sbjct: 715 EYIDTLEEETVMLAMTPDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRN 774
Query: 657 MYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAV 716
YQ M KQ MG + R D + L PQ P+V T + E P G N+IVA+
Sbjct: 775 TYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAI 834
Query: 717 LAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDG-NKVDRGQKLFRRNKDA--K 773
+YTGY+ ED++I+N+S+VDRG Y++ S G ++ + +K R
Sbjct: 835 ASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEVFEKPTRETCQGMRH 894
Query: 774 SLHSVIDSDGLPYVGQMIHPGE----PYCSIYDKTTNSWRTNSR----------KGSESV 819
+++ +D DGL G + + ++ + TN R + SE+
Sbjct: 895 AIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRYTKRDCSTFLRTSETG 954
Query: 820 FVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVT 879
VD V V + + IR R R P IGDKF+SRHGQKG C + DMPF+
Sbjct: 955 IVDQVMVTLNQEGY--KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFT-CE 1011
Query: 880 GMRPDLIINPHAFPSRMTIAMLLESVAAK 908
G+ PD+IINPHA PSRMTI L+E + K
Sbjct: 1012 GITPDIIINPHAIPSRMTIGHLIECLQGK 1040
>gi|440903358|gb|ELR54029.1| DNA-directed RNA polymerase II subunit RPB2 [Bos grunniens mutus]
Length = 1175
Score = 240 bits (613), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 245/932 (26%), Positives = 401/932 (43%), Gaps = 109/932 (11%)
Query: 34 MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVR---ERFNFGQFPVMLKTRRCHLQGADS 90
M + R ++Y+ L D+ + G ++ ++ G+ P+ML++ C L G
Sbjct: 110 MPNEARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTD 169
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
+ L L E + GGYFI+NG E+V +I ++ ++ + +D + YT + R
Sbjct: 170 RDLCELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFAKKDSKYAYTGEC---R 223
Query: 151 CVRKDQS--SVTLKLYYLLNGSV---------RLGFWLQGKEYLLPVGIVLKALVDTNDL 199
++ S + T+ + L G R+ L + +P+ IV +AL +D
Sbjct: 224 SCLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDR 283
Query: 200 EIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVI 259
+I H+ +++ P + E VK L E + + L IG +
Sbjct: 284 DILEHIIYDFED-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGS--RGAK 328
Query: 260 DGLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDS 315
G+ E A+ V++ + H+ ++ K L +M+ +L D+ D
Sbjct: 329 PGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDH 388
Query: 316 LQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPS 375
N+ + L G L+ + ++ L++ + Q I + GK F+ LA IK +
Sbjct: 389 YGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFI-DRGKDFNL-ELA-IK-------T 438
Query: 376 KQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRT 435
+ I ++ L TG Q Q RAG + RL F +S R ++ G +
Sbjct: 439 RIISDGLKYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRLNSPIGRDG-KL 496
Query: 436 TSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRV 495
R+L WG +CP TP+G GL+ ++ ++ + IL
Sbjct: 497 AKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYIS-----------VGSQPSPILEF 545
Query: 496 LIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAA 549
L M +L ++ + + ++G VG+ + E+++ LR+L+ VS
Sbjct: 546 LEEWSM-ENLEEISPAAIADATKIFVNGCWVGI--HKDPEQLMNTLRKLRRQMDIIVSEV 602
Query: 550 SVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN------------ 597
S+I D E + G L K + R+I E N
Sbjct: 603 SMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGV 662
Query: 598 IELIGPFEQ--VFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPR 655
+E I E+ V + + D + TH EIHP+ +L V A++ P+ DHNQSPR
Sbjct: 663 VEYIDTLEEETVMLAMTPDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPR 722
Query: 656 NMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVA 715
N YQ M KQ MG + R D + L PQ P+V T + E P G N+IVA
Sbjct: 723 NTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVA 782
Query: 716 VLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDA--- 772
+ +YTGY+ ED++I+N+S+VDRG Y++ S G D+ + + ++
Sbjct: 783 IASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKG--FDQEEVFEKPTRETCQG 840
Query: 773 --KSLHSVIDSDGLPYVGQMIHPGE----PYCSIYDKTTNSWRTNSR----------KGS 816
+++ +D DGL G + + ++ + TN R + S
Sbjct: 841 MRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELEGTNRRYTKRDCSTFLRTS 900
Query: 817 ESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFS 876
E+ VD V V + + IR R R P IGDKF+SRHGQKG C + DMPF+
Sbjct: 901 ETGIVDQVMVTLNQEGY--KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFT 958
Query: 877 GVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
G+ PD+IINPHA PSRMTI L+E + K
Sbjct: 959 -CEGITPDIIINPHAIPSRMTIGHLIECLQGK 989
>gi|335293559|ref|XP_003129085.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Sus scrofa]
Length = 1167
Score = 240 bits (613), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 244/931 (26%), Positives = 400/931 (42%), Gaps = 107/931 (11%)
Query: 34 MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVR---ERFNFGQFPVMLKTRRCHLQGADS 90
M + R ++Y+ L D+ + G ++ ++ G+ P+ML++ C L G
Sbjct: 102 MPNEARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTD 161
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
+ L L E + GGYFI+NG E+V +I ++ ++ + +D + YT +
Sbjct: 162 RDLCELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFAKKDSKYAYTGECR--S 216
Query: 151 CVRKD-QSSVTLKLYYLLNGSV---------RLGFWLQGKEYLLPVGIVLKALVDTNDLE 200
C+ + + T+ + L G R+ L + +P+ IV +AL +D +
Sbjct: 217 CLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRD 276
Query: 201 IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
I H+ +++ P + E VK L E + + L IG +
Sbjct: 277 ILEHIIYDFED-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGS--RGAKP 321
Query: 261 GLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
G+ E A+ V++ + H+ ++ K L +M+ +L D+ D
Sbjct: 322 GVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 381
Query: 317 QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
N+ + L G L+ + ++ L++ + Q I + GK F+ LA IK ++
Sbjct: 382 GNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFI-DRGKDFNL-ELA-IK-------TR 431
Query: 377 QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
I ++ L TG Q Q RAG + RL F +S R ++ G +
Sbjct: 432 IISDGLKYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRLNSPIGRDG-KLA 489
Query: 437 SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
R+L WG +CP TP+G GL+ ++ ++ + IL L
Sbjct: 490 KPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYIS-----------VGSQPSPILEFL 538
Query: 497 IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAAS 550
M +L ++ + + ++G VG+ + E+++ LR+L+ VS S
Sbjct: 539 EEWSM-ENLEEISPAAIADATKIFVNGCWVGI--HKDPEQLMNTLRKLRRQMDIIVSEVS 595
Query: 551 VIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN------------I 598
+I D E + G L K + R+I E N +
Sbjct: 596 MIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVV 655
Query: 599 ELIGPFEQ--VFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRN 656
E I E+ V + + D + TH EIHP+ +L V A++ P+ DHNQSPRN
Sbjct: 656 EYIDTLEEETVMLAMTPDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRN 715
Query: 657 MYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAV 716
YQ M KQ MG + R D + L PQ P+V T + E P G N+IVA+
Sbjct: 716 TYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAI 775
Query: 717 LAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDA---- 772
+YTGY+ ED++I+N+S+VDRG Y++ S G D+ + + ++
Sbjct: 776 ASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKG--FDQEEVFEKPTRETCQGM 833
Query: 773 -KSLHSVIDSDGLPYVGQMIHPGE----PYCSIYDKTTNSWRTNSR----------KGSE 817
+++ +D DGL G + + ++ + TN R + SE
Sbjct: 834 RHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELEGTNRRYTKRDCSTFLRTSE 893
Query: 818 SVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSG 877
+ VD V V + + IR R R P IGDKF+SRHGQKG C + DMPF+
Sbjct: 894 TGIVDQVMVTLNQEGY--KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFT- 950
Query: 878 VTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
G+ PD+IINPHA PSRMTI L+E + K
Sbjct: 951 CEGITPDIIINPHAIPSRMTIGHLIECLQGK 981
>gi|324120668|dbj|BAJ78725.1| RNA polymerase II second largest subunit [Stichotrema asahinai]
Length = 1173
Score = 240 bits (613), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 243/928 (26%), Positives = 406/928 (43%), Gaps = 106/928 (11%)
Query: 36 DHCRQAKISYTGKLMADVEFQYL-DAGSPVVR--ERFNFGQFPVMLKTRRCHLQGADSQK 92
+ R ++Y+ L D+ + D P+ + + G+ P+ML++ C L G +
Sbjct: 112 NEARLRNLTYSAPLYVDISKTIIRDGEDPIYKPHTKTFIGKIPIMLRSTYCLLNGMTDRD 171
Query: 93 LVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCV 152
L L E + G YFI+NG E+V +I ++ ++ + +D + Y K + C+
Sbjct: 172 LTELNECPFDPGAYFIINGSEKV---LIAQEKMATNTVYVFAMKDGKFAY--KTEIRSCL 226
Query: 153 R-KDQSSVTLKLYYLLNGSV---------RLGFWLQGKEYLLPVGIVLKALVDTNDLEIF 202
+ + TL + L G R+ L + +P+ +V +AL D +I
Sbjct: 227 EHSSRPTSTLWVNMLARGGQVGKRNSVGQRIIAILPYIKQEIPIMVVFRALGFVADRDIL 286
Query: 203 NHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGL 262
H+ +++ P + E VK L E + + L IG + G+
Sbjct: 287 EHIIYDFED-----------PEMMEMVKPSLDEA--FVIQEQNIALNFIGA--RGARPGV 331
Query: 263 QSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSLQN 318
E A+ +++ + H+ ++ K L +M+ +L D+ D N
Sbjct: 332 TKEKRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGN 391
Query: 319 QEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQI 378
+ + L G L++ + ++ L K +L + + GK F NI+ ++ ++ I
Sbjct: 392 KRLDLGGPLLSFLFRGMFKN-LIKEVRLYAQKFVDRGKDF------NIELAVK---TRII 441
Query: 379 GTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSV 438
+ L TG A Q Q RAG + RL F +S R V+ G +
Sbjct: 442 SDGLRYSLATGNWADQKKAH-QARAGVSQVLNRLTFASTLSHLRRVNSPIGRDG-KLAKP 499
Query: 439 RKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIG 498
R+L WG +CP TP+G GL+ ++ ++ + IL L
Sbjct: 500 RQLHNTLWGMICPAETPEGAAVGLVKNLALMAYIS-----------VGSQPSPILEFLEE 548
Query: 499 VGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAASVI 552
M +L ++ S + ++G VG+ E+ +++ LR+L+ VS S++
Sbjct: 549 WSM-ENLEEIAPSSIADSTKIFVNGCWVGIHRDPEL--LMSTLRKLRRQMDIIVSEVSMV 605
Query: 553 PD--DLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEE---------SQNIELI 601
D D E+ + G L + S + + ++I L + S +E I
Sbjct: 606 RDIRDREI-RIYTDAGRICRPLLIVDSEGRLLMKKKDIDLLKDRDYGWQSLVSSGVVEYI 664
Query: 602 GPFEQ-VFMEIRCPDGGDGGRRNAFPA--THEEIHPTGMLSVVANLTPYSDHNQSPRNMY 658
E+ M P+ R + + A TH EIHP+ +L V A++ P+ DHNQSPRN Y
Sbjct: 665 DTLEEETIMIAMTPNDLRQNRDDTYCANFTHCEIHPSMILGVCASIIPFPDHNQSPRNTY 724
Query: 659 QCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLA 718
Q M KQ MG + R D + L P P+V T + E P G N+IVA+L
Sbjct: 725 QSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILC 784
Query: 719 YTGYDMEDAMILNKSSVDRGMCHGQIYQT----ETIDLSDDGNKVDRGQKLFRRNKDAKS 774
YTGY+ ED++I+N S+V+RG Y++ E L D + ++ +L + +
Sbjct: 785 YTGYNQEDSIIINASAVERGFFRSVFYRSYRDAEVRRLGDQDEQFEKPNRLTCQGM-RHA 843
Query: 775 LHSVIDSDGLPYVG--------------QMIHPGEPYCSIYDKTTNSWRTNSRKGSESVF 820
++ +D DG+ G ++ + S+ K T + + SE+
Sbjct: 844 IYDKLDEDGIIAPGVRVSGDDVVIGKTITLMENEDELESVTKKYTKRDASTFLRRSETGV 903
Query: 821 VDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTG 880
VD V + + N++ + IR R R P IGDKF+SRHGQKG C + DMPF+ G
Sbjct: 904 VDQVMLTL-NAEGY-KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTS-EG 960
Query: 881 MRPDLIINPHAFPSRMTIAMLLESVAAK 908
+ PD+IINPHA PSRMTI L+E + K
Sbjct: 961 ITPDIIINPHAIPSRMTIGHLIECLQGK 988
>gi|449330210|gb|AGE96471.1| DNA-directed RNA polymerase II second largest subunit
[Encephalitozoon cuniculi]
Length = 1141
Score = 240 bits (613), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 246/929 (26%), Positives = 403/929 (43%), Gaps = 120/929 (12%)
Query: 36 DHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFN---FGQFPVMLKTRRCHLQGADSQK 92
+ R ++Y L DV + L V + +++ FG PVML++ C L G +
Sbjct: 93 NEARIRDLTYASPLFIDVTKETLSELGVVDKHKYSRVPFGSLPVMLRSSYCVLYGLGDKD 152
Query: 93 LVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCV 152
L+ L E + GGYFI+NG E+V I+ ++ + V + + YT A IR V
Sbjct: 153 LIDLGECPYDQGGYFIVNGSEKV----IVAQERMASNTVYVFKKAQPATYTHYAE-IRSV 207
Query: 153 ----RKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCC 208
++ S++++KL G +R+ L ++ +P+ ++ +AL +D EI +H+
Sbjct: 208 PEKSSRNPSTLSMKLCRS-PGVIRVSLPLVKQD--VPLFVLYRALGFLSDKEIIDHILYE 264
Query: 209 YDE------KYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGL 262
DE K E+G V VQD ++ L +IG+ P+ G
Sbjct: 265 DDEEMFELLKESIEEGTV---------------VQDQNVA-----LDYIGKRSAPI--GT 302
Query: 263 QSESYYAVAETVIRDYIFVHLNDN----NDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQN 318
E +A+ ++ + H+ K + +++Q+L + D+ D
Sbjct: 303 PQEKRIVMAKDLLAKEVLPHIGTQEFCETKKAYFIGYIVQRLLLVALGRRNPDDRDHYGK 362
Query: 319 QEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQI 378
+ + L G L+ + + + +Q IEN + FN+A K + I
Sbjct: 363 KRMDLSGPLLASLFRTLFKKLCVDTTRHMQKCIENGRE----FNIALGLK------ASII 412
Query: 379 GTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSV 438
L TG Q +Q RAG R NF+ +S R V+ G + +
Sbjct: 413 TQGFRYALATGNWGDQAKA-MQTRAGVAQVLNRYNFVSTLSHLRRVNTPIEKEG-KLAAP 470
Query: 439 RKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIG 498
R+L WG +CP TP+G+ CGL+ +++ + S S G + +F L
Sbjct: 471 RQLHNTHWGMVCPAETPEGQACGLVKNLSLMAYI-SVGSSSGPLIEF----------LEE 519
Query: 499 VGMIPSLPKLVKSGPPAVLSVLLDGRVVGV--IPSSEIEKVVAHLRRLKVSAASVIPDDL 556
G + SL ++ S A + ++G VG+ P I+ + R L++ I D+
Sbjct: 520 CG-VESLEEISTSQLDAATKIFVNGVWVGIHSDPVGLIKSLKLLRRSLEMDKEVSIVRDI 578
Query: 557 EVGYVPLSLGGAYPGL-YLFTSPPKFV---RPVRNISLPSEESQNIELIGPFEQVFMEIR 612
+ + P L K V +R + + N+ G E F+++
Sbjct: 579 REKEIRVQSDAGRPCRPLLVVKDNKLVITAEDIRKLKRGEIKWDNLVTSGFIE--FLDVE 636
Query: 613 -------------CPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQ 659
D + TH EIHP +L + A+ P+ DHNQSPRN YQ
Sbjct: 637 EEEMSMIAMNTKILADESRNSSDVSVSYTHCEIHPALILGICASTIPFPDHNQSPRNTYQ 696
Query: 660 CQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAY 719
M KQ MG R D L PQ P+V T + E P+G NA+VA+ Y
Sbjct: 697 SAMGKQAMGIYATNFLLRMDTLSNILFYPQKPLVTTKSMEYLRFKELPSGQNALVAIACY 756
Query: 720 TGYDMEDAMILNKSSVDRGMCHGQIYQTETID-------LSDDGNKVDRGQKLFRRNKDA 772
+GY+ ED++I+N+S++DRG+ Y+T T ++++ K RG L +N +
Sbjct: 757 SGYNQEDSIIMNQSAIDRGLFRSFFYRTYTDQESMSRPGVNEEFCKPSRGAVLRMKNLN- 815
Query: 773 KSLHSVIDSDGL-----------PYVGQMIHPGEPYCSIYDKTTNSWRTNSR--KGSESV 819
++ +D DGL +G++ +P S + ++ +S + +E+
Sbjct: 816 ---YNKLDDDGLISPGTRVTGDDVLIGKITPILDPERSTKEAPVYVYKDSSTAMRRTETG 872
Query: 820 FVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVT 879
VD V V K+ + ++ R R P +GDKF+SRH QKG DMPF+
Sbjct: 873 IVDTVIVTNKDGYKF---SKVKVRSGRIPQMGDKFASRHAQKGTIGITLRQEDMPFTS-E 928
Query: 880 GMRPDLIINPHAFPSRMTIAMLLESVAAK 908
G+ PD+IINPHA PSRMTI L+E + K
Sbjct: 929 GIVPDIIINPHAIPSRMTIGHLIECLLGK 957
>gi|281352499|gb|EFB28083.1| hypothetical protein PANDA_006563 [Ailuropoda melanoleuca]
Length = 1168
Score = 240 bits (613), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 245/932 (26%), Positives = 400/932 (42%), Gaps = 109/932 (11%)
Query: 34 MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFN---FGQFPVMLKTRRCHLQGADS 90
M + R ++Y+ L D+ + G ++ + G+ P+ML++ C L G
Sbjct: 103 MPNEARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTD 162
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
+ L L E + GGYFI+NG E+V +I ++ ++ + +D + YT + R
Sbjct: 163 RDLCELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFAKKDSKYAYTGEC---R 216
Query: 151 CVRKDQS--SVTLKLYYLLNGSV---------RLGFWLQGKEYLLPVGIVLKALVDTNDL 199
++ S + T+ + L G R+ L + +P+ IV +AL +D
Sbjct: 217 SCLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDR 276
Query: 200 EIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVI 259
+I H+ +++ P + E VK L E + + L IG +
Sbjct: 277 DILEHIIYDFED-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGS--RGAK 321
Query: 260 DGLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDS 315
G+ E A+ V++ + H+ ++ K L +M+ +L D+ D
Sbjct: 322 PGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDH 381
Query: 316 LQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPS 375
N+ + L G L+ + ++ L++ + Q I + GK F+ LA IK +
Sbjct: 382 YGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFI-DRGKDFNL-ELA-IK-------T 431
Query: 376 KQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRT 435
+ I ++ L TG Q Q RAG + RL F +S R ++ G +
Sbjct: 432 RIISDGLKYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRLNSPIGRDG-KL 489
Query: 436 TSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRV 495
R+L WG +CP TP+G GL+ ++ ++ + IL
Sbjct: 490 AKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYIS-----------VGSQPSPILEF 538
Query: 496 LIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAA 549
L M +L ++ + + ++G VG+ + E+++ LR+L+ VS
Sbjct: 539 LEEWSM-ENLEEISPAAIADATKIFVNGCWVGI--HKDPEQLMNTLRKLRRQMDIIVSEV 595
Query: 550 SVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN------------ 597
S+I D E + G L K + R+I E N
Sbjct: 596 SMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGV 655
Query: 598 IELIGPFEQ--VFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPR 655
+E I E+ V + + D + TH EIHP+ +L V A++ P+ DHNQSPR
Sbjct: 656 VEYIDTLEEETVMLAMTPDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPR 715
Query: 656 NMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVA 715
N YQ M KQ MG + R D + L PQ P+V T + E P G N+IVA
Sbjct: 716 NTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVA 775
Query: 716 VLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDA--- 772
+ +YTGY+ ED++I+N+S+VDRG Y++ S G D+ + + ++
Sbjct: 776 IASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKG--FDQEEVFEKPTRETCQG 833
Query: 773 --KSLHSVIDSDGLPYVGQMIHPGE----PYCSIYDKTTNSWRTNSR----------KGS 816
+++ +D DGL G + + ++ + TN R + S
Sbjct: 834 MRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELEGTNRRYTKRDCSTFLRTS 893
Query: 817 ESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFS 876
E+ VD V V + + IR R R P IGDKF+SRHGQKG C + DMPF+
Sbjct: 894 ETGIVDQVMVTLNQEGY--KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFT 951
Query: 877 GVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
G+ PD+IINPHA PSRMTI L+E + K
Sbjct: 952 -CEGITPDIIINPHAIPSRMTIGHLIECLQGK 982
>gi|443726751|gb|ELU13810.1| hypothetical protein CAPTEDRAFT_172112 [Capitella teleta]
Length = 1174
Score = 240 bits (612), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 246/938 (26%), Positives = 402/938 (42%), Gaps = 123/938 (13%)
Query: 34 MFDHCRQAKISYTGKLMADVEFQYLDAGS-PV--VRERFNFGQFPVMLKTRRCHLQGADS 90
M + R ++Y+ L D+ + G P+ + ++ G+ P+ML++ C L G
Sbjct: 111 MPNEARLRNLTYSAPLYVDITKTLIKEGDDPIEALSQKTFVGKVPIMLRSTYCLLNGLTD 170
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
+ L L E + GGYFI+NG E+V L Q + F + Y K +
Sbjct: 171 RDLTELNECPLDPGGYFIINGSEKV-----LIAQEKMATNTVYVFSQKESKYAYKTEIRS 225
Query: 151 CVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
C+ + + TL + + G + G+ + +PV IV +AL +D +
Sbjct: 226 CLEHSSRPTSTLWINMMARGGHGVRKNAIGQRIIAILPYIRQEIPVIIVFRALGFVSDRD 285
Query: 201 IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAE---VQDLSLTTRLQCLQHIGEHFQP 257
I H+ +D+ P + E VK L E VQ+ ++ L IG +
Sbjct: 286 ILEHIIYDFDD-----------PEMMEMVKPSLDEAFVVQEQNVA-----LNFIGA--RG 327
Query: 258 VIDGLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNP 313
G+ E A+ +++ + H+ ++ K L +++ +L D+
Sbjct: 328 ARPGVTKEKRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYIVHRLLLAALGRRECDDR 387
Query: 314 DSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKN 373
D N+ + L G L+ + + L K +L + + GK F N++ +
Sbjct: 388 DHYGNKRLDLAGPLLAFLFRGLFRN-LTKEVRLFSQKFIDQGKDF------NLELAIR-- 438
Query: 374 PSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGL 433
++ I ++ L TG Q Q RAG + RL F+ +S R ++ G
Sbjct: 439 -TRTITDGLKYSLATGNWGDQKKAH-QARAGVSQVLNRLTFVSTLSHLRRLNSPVGRDG- 495
Query: 434 RTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSIL 493
+ R+L WG +CP TP+G GL+ ++ ++ + IL
Sbjct: 496 KLARPRQLHNTQWGMICPAETPEGSCVGLVKNLALMAYIS-----------VGSQPSPIL 544
Query: 494 RVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VS 547
L M +L ++ S + ++G VG+ + E+++ L++L+ VS
Sbjct: 545 EFLEEWSM-ENLEEIAPSAIQDATKIFVNGCWVGI--HRDPEQLMNTLKKLRRQMDIIVS 601
Query: 548 AASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN---------- 597
S++ D + + G L K + R+I L E N
Sbjct: 602 EVSMVRDISDREIRIYTDAGRICRPLLIVENQKLLLKKRHIDLLKEREYNNYGWQDLVAS 661
Query: 598 --IELIGPFEQ-VFMEIRCPDG-GDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQS 653
+E I E+ M PD + G +++ TH EIHP+ +L V A++ P+ DHNQS
Sbjct: 662 GVVEYIDTLEEETIMLSMSPDQLQESGYCSSY--THCEIHPSMILGVCASIIPFPDHNQS 719
Query: 654 PRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAI 713
PRN YQ M KQ MG + R D + L PQ P+V T + E P G NAI
Sbjct: 720 PRNTYQSAMGKQAMGVYITNYHVRMDTLAHVLFYPQKPLVTTRSMEYLRFRELPAGINAI 779
Query: 714 VAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAK 773
VA+ +YTGY+ ED++ILN+ +VDRG Y++ S G +D+ ++LF R
Sbjct: 780 VAIASYTGYNQEDSVILNEGAVDRGFFRSVFYRSYKDSESKKG--LDQ-EELFERPDPNH 836
Query: 774 ------SLHSVIDSDGLPYVGQMIHPGEPYCSIYDKT-----------TNSWRTNSR--- 813
+++ +D DG+ G + + + KT + R R
Sbjct: 837 VQGMRMAVYDKLDDDGIIAPGTRVSGDD---VLIGKTLTLPENEDELDAQAKRFTKRDCS 893
Query: 814 ---KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPD 870
+ SE+ +D V V + + IR R + P IGDKF+SRHGQKG C +
Sbjct: 894 VFMRRSETGIIDQVMVTINQEGY--KFCKIRVRTVKTPQIGDKFASRHGQKGTCGIRYRQ 951
Query: 871 IDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
DMPF+ G+ PD+IINPHA PSRMT+ L+E + K
Sbjct: 952 EDMPFT-CEGITPDIIINPHAIPSRMTVGHLIECLQGK 988
>gi|390939172|ref|YP_006402910.1| DNA-directed RNA polymerase subunit B [Desulfurococcus fermentans
DSM 16532]
gi|390192279|gb|AFL67335.1| DNA-directed RNA polymerase subunit B [Desulfurococcus fermentans
DSM 16532]
Length = 1166
Score = 240 bits (612), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 256/975 (26%), Positives = 412/975 (42%), Gaps = 149/975 (15%)
Query: 17 RHHIESFDYMLDEGLSEMFD--HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQF 74
++ I+S + EG+ E CR ++Y + V + D +
Sbjct: 65 KYRIDSPKWTSVEGIEESKTPMECRLRNLTYATPIYVSVRIE--DESGYTREQELKLMDL 122
Query: 75 PVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSS 134
PVMLK+ L Q+L+ E+ + GGYFI+NG E+V I+ +++ + +
Sbjct: 123 PVMLKSSIDPLSKLTPQELIENGEDPRDPGGYFIINGSEKV----IVAQEDLASNNIIVD 178
Query: 135 FRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALV 194
T A V R +S + ++ +G F QG ++ P I++ AL
Sbjct: 179 VMQEGSSVTHVAKVTSVSRGRRSQLIIERRK--DGVFYASF--QGHKF--PALILMTALG 232
Query: 195 DTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKII----------LAEVQDLSLTTR 244
++ EI Y K E P + + +I+ EV+ L R
Sbjct: 233 LASEAEIL------YSTSLKPEIQTYLLPSILQVQEILPKLEIPEGASEEEVRRLKEEYR 286
Query: 245 LQCLQH----IGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDNND---KFNLLIF-- 295
+ ++ I F I G E A+ ++ + + H+ ++ + +F
Sbjct: 287 RKVIEEALDFIASKF---IIGRPREERILRAQRLLDERLLPHIGIDSSPETRLKKAVFIG 343
Query: 296 -MLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENN 354
M+ ++ L D+ D +N+ + L G ++ + L+ + + R+ K+ I+ ++
Sbjct: 344 QMISRIIELQLGYRGPDDKDHYRNKRLKLAGDMLAVLLRAAMMGFAREIKEGIEKQLAKT 403
Query: 355 GKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNF 414
KK D M PS I I+ + TG R G + +R N
Sbjct: 404 -KKIDL--------KMVFKPSI-ITDRIQHAMATGNWPGG-------RTGVSQLLDRTNM 446
Query: 415 LRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVAS 474
L +S R V + G R+L WG +CP TP+G GL+ ++ V+
Sbjct: 447 LSTLSHLRRVVSPLA-RGQPHFEARELHGTQWGRMCPFETPEGANIGLVKNLALMTNVSV 505
Query: 475 YYDSRGNIRDFSKMRTSILRVLIGVGMIP-----SLPKLVKSGPPAVLS----------- 518
D + I +L VG++P ++ + G ++S
Sbjct: 506 GIDDK-----------EIEALLYRVGVVPIVSTRTIDGKIHKGLIDMISEDVSKATEISE 554
Query: 519 -------VLLDGRVVGV-IPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAY- 569
V L+G+++G E+ + + LRR + I ++ V Y+ G Y
Sbjct: 555 KYSGWCKVFLNGKLIGYHKDGEELARTIRSLRR-----SGKISSEVNVAYI----GNKYI 605
Query: 570 --------------PGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPD 615
P + + PK R ++ L SE E + +Q +E PD
Sbjct: 606 KEVVVNTDSGRIRRPLIVIENGVPKLTR--EHVKLLSEGKLTFEDL--VKQGIIEYLDPD 661
Query: 616 GGDGGRRNAFPA------THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGF 669
+ P+ TH EI +L + A++ PY +HNQSPRNMYQ MAKQ++G
Sbjct: 662 EEENAYIALQPSDVTAEHTHLEIWIPAILGITASIIPYPEHNQSPRNMYQSAMAKQSLGL 721
Query: 670 SVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMI 729
+ R D + + L PQ P+V T G +E P G N +VAVL YTGY+MEDA+I
Sbjct: 722 YAANFQRRMDTRGHFLHYPQRPLVETRMMNVIGYNERPAGQNMVVAVLTYTGYNMEDALI 781
Query: 730 LNKSSVDRGMCHGQIYQT-ETIDLSDDGNKVD------------RGQKLFRR-NKDAKSL 775
+N+SSV+RG+ ++ T++ G D RGQK + + +D
Sbjct: 782 MNRSSVERGLARSTFFRLYTTVEYKYPGGIQDEITIPSTNVRGYRGQKAYEKLEEDGIVA 841
Query: 776 HSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNS--RKGSESVFVDYVAVDMKNSKN 833
S G +G++ P Y+ + + S + E VD V + M + N
Sbjct: 842 PETQVSGGDVLIGKVSPPRFLSAQEYEVGGLTRQDTSIVMRHEEKGIVDTVLITMDSEGN 901
Query: 834 LPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFP 893
+ +R R R P +GDKF+SRHGQKGV L P DMPF+ G+ PDLIINPHAFP
Sbjct: 902 --KLIKVRVRDLRIPELGDKFASRHGQKGVLGLLLPQYDMPFTE-EGVTPDLIINPHAFP 958
Query: 894 SRMTIAMLLESVAAK 908
SRMT+A L+ES+A K
Sbjct: 959 SRMTVAQLMESIAGK 973
>gi|324120656|dbj|BAJ78719.1| RNA polymerase II second largest subunit [Metylophorus sp. E-43]
Length = 1176
Score = 240 bits (612), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 245/932 (26%), Positives = 401/932 (43%), Gaps = 106/932 (11%)
Query: 34 MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFN---FGQFPVMLKTRRCHLQGADS 90
M + R ++Y+ L D+ + G + + G+ P+ML++ C L G
Sbjct: 108 MPNEARLRNLTYSAPLYVDITKTIVKEGEEPIETQHQKSFIGKIPIMLRSTYCLLSGLTD 167
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
+ L L E + GGYFI+NG E+V +I ++ ++ S +D + Y K +
Sbjct: 168 RDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFSMKDGKYAY--KTEIRS 222
Query: 151 CVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
C+ + + TL + + G + G+ + +P+ IV +AL D +
Sbjct: 223 CLEHSSRPTSTLWVNMMARGGQSIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRD 282
Query: 201 IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
I H+ +D+ P + E VK L E + + L IG +
Sbjct: 283 ILEHIIYDFDD-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGA--RGARP 327
Query: 261 GLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
G+ E A +++ + H+ ++ K L +M+ +L D+ D
Sbjct: 328 GVTKEKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 387
Query: 317 QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
N+ + L G L+ + ++ +++ + Q I + GK F+ LA IK +K
Sbjct: 388 GNKRLDLAGPLLAFLFRGLFKNLMKEVRMFAQKFI-DRGKDFNL-ELA-IK-------TK 437
Query: 377 QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
I + L TG Q Q RAG + RL F +S R V+ G +
Sbjct: 438 IITDGLRYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRVNSPIGRDG-KLA 495
Query: 437 SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
R+L WG +CP TP+G GL+ ++ ++ + IL L
Sbjct: 496 KPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYIS-----------VGSQPSPILEFL 544
Query: 497 IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAAS 550
M +L ++ S + ++G VG+ + E+++A LR+L+ VS S
Sbjct: 545 EEWSM-ENLEEIAPSAIADATKIFVNGCWVGI--HRDPEQLMATLRKLRRQMDIIVSEVS 601
Query: 551 VIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN------------I 598
+I D + + G L + + ++++ E N +
Sbjct: 602 MIRDIRDREIRIYTDAGRICRPLLIVENGQLLLKRNHVNMLKEREFNNYGWQVLVASGVV 661
Query: 599 ELIGPFEQVFMEIRCP-DGGDGGRRNAFP----ATHEEIHPTGMLSVVANLTPYSDHNQS 653
E I E+ + I D GG+ + TH EIHP +L V A++ P+ DHNQS
Sbjct: 662 EYIDTLEEETVMIAMNLDDLRGGQEKEYAYCSTHTHCEIHPAMILGVCASIIPFPDHNQS 721
Query: 654 PRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAI 713
PRN YQ M KQ MG + R D + L P P+V T + E P G N+I
Sbjct: 722 PRNTYQSAMGKQAMGVYITNYHVRMDTLAHVLFYPHKPLVTTRSMEYLRFRELPAGINSI 781
Query: 714 VAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDD-GNKVDRGQKLFRRNKDA 772
VA+L YTGY+ ED++ILN S+V+RG Y++ S G++ ++ +K R+
Sbjct: 782 VAILCYTGYNQEDSVILNASAVERGYFRSCFYRSYKDSESKRIGDQEEQFEKPTRQTCQG 841
Query: 773 --KSLHSVIDSDGLPYVGQMIHPGE----PYCSIYDKTTNSWRTNSR----------KGS 816
+++ +D DG+ G + + ++ D + T R + S
Sbjct: 842 MRNAMYDKLDDDGIITPGVRVSGDDVVIGKTITLPDTDDDLEGTTRRFTKRDASTFLRNS 901
Query: 817 ESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFS 876
E+ VD V + + N++ + IR R R P IGDKF+SRHGQKG C + DMPF+
Sbjct: 902 ETGCVDQVMLTL-NAEGY-KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFT 959
Query: 877 GVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
G+ PD+IINPHA PSRMTI L+E + K
Sbjct: 960 -CEGLTPDIIINPHAIPSRMTIGHLIECLQGK 990
>gi|73975081|ref|XP_861044.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 17
[Canis lupus familiaris]
gi|410957579|ref|XP_003985403.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 isoform 2
[Felis catus]
Length = 1099
Score = 240 bits (612), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 245/932 (26%), Positives = 401/932 (43%), Gaps = 109/932 (11%)
Query: 34 MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVR---ERFNFGQFPVMLKTRRCHLQGADS 90
M + R ++Y+ L D+ + G ++ ++ G+ P+ML++ C L G
Sbjct: 34 MPNEARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTD 93
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
+ L L E + GGYFI+NG E+V +I ++ ++ + +D + YT + R
Sbjct: 94 RDLCELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFAKKDSKYAYTGEC---R 147
Query: 151 CVRKDQS--SVTLKLYYLLNGSV---------RLGFWLQGKEYLLPVGIVLKALVDTNDL 199
++ S + T+ + L G R+ L + +P+ IV +AL +D
Sbjct: 148 SCLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDR 207
Query: 200 EIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVI 259
+I H+ +++ P + E VK L E + + L IG +
Sbjct: 208 DILEHIIYDFED-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGS--RGAK 252
Query: 260 DGLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDS 315
G+ E A+ V++ + H+ ++ K L +M+ +L D+ D
Sbjct: 253 PGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDH 312
Query: 316 LQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPS 375
N+ + L G L+ + ++ L++ + Q I + GK F+ LA IK +
Sbjct: 313 YGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFI-DRGKDFNL-ELA-IK-------T 362
Query: 376 KQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRT 435
+ I ++ L TG Q Q RAG + RL F +S R ++ G +
Sbjct: 363 RIISDGLKYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRLNSPIGRDG-KL 420
Query: 436 TSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRV 495
R+L WG +CP TP+G GL+ ++ ++ + IL
Sbjct: 421 AKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYIS-----------VGSQPSPILEF 469
Query: 496 LIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAA 549
L M +L ++ + + ++G VG+ + E+++ LR+L+ VS
Sbjct: 470 LEEWSM-ENLEEISPAAIADATKIFVNGCWVGI--HKDPEQLMNTLRKLRRQMDIIVSEV 526
Query: 550 SVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN------------ 597
S+I D E + G L K + R+I E N
Sbjct: 527 SMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGV 586
Query: 598 IELIGPFEQ--VFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPR 655
+E I E+ V + + D + TH EIHP+ +L V A++ P+ DHNQSPR
Sbjct: 587 VEYIDTLEEETVMLAMTPDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPR 646
Query: 656 NMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVA 715
N YQ M KQ MG + R D + L PQ P+V T + E P G N+IVA
Sbjct: 647 NTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVA 706
Query: 716 VLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDA--- 772
+ +YTGY+ ED++I+N+S+VDRG Y++ S G D+ + + ++
Sbjct: 707 IASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKG--FDQEEVFEKPTRETCQG 764
Query: 773 --KSLHSVIDSDGLPYVGQMIHPGE----PYCSIYDKTTNSWRTNSR----------KGS 816
+++ +D DGL G + + ++ + TN R + S
Sbjct: 765 MRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELEGTNRRYTKRDCSTFLRTS 824
Query: 817 ESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFS 876
E+ VD V V + + IR R R P IGDKF+SRHGQKG C + DMPF+
Sbjct: 825 ETGIVDQVMVTLNQEGY--KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFT 882
Query: 877 GVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
G+ PD+IINPHA PSRMTI L+E + K
Sbjct: 883 -CEGITPDIIINPHAIPSRMTIGHLIECLQGK 913
>gi|339250694|ref|XP_003374332.1| DNA-directed RNA polymerase II subunit RPB2 [Trichinella spiralis]
gi|316969378|gb|EFV53485.1| DNA-directed RNA polymerase II subunit RPB2 [Trichinella spiralis]
Length = 1190
Score = 240 bits (612), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 246/951 (25%), Positives = 408/951 (42%), Gaps = 150/951 (15%)
Query: 34 MFDHCRQAKISYTGKLMADVEFQYLDAGS-PVVR--ERFNFGQFPVMLKTRRCHLQGADS 90
M + R ++Y+ L D+ + P++ E+ G+ P+ML++ C L
Sbjct: 129 MPNEARLRNLTYSAPLYVDITKTIAKSNEEPLIAKYEKVFIGKIPIMLRSTYCLLNRLSE 188
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
+ L L E + GGYFI+NG E+V +I ++ ++ S +D + + KA
Sbjct: 189 RDLTDLNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFSLKDNKFAF--KAECRS 243
Query: 151 CVR---KDQSSVTLKLYYLL--NGSVRLGFWLQGKEYL---------LPVGIVLKALVDT 196
C+ + S++ + +Y +G+ L G+ + LPV +V +AL
Sbjct: 244 CLESSSRPTSTLWVNMYARGGGHGAANTKKQLMGQRIVVNLPYVKQELPVIVVFRALGFV 303
Query: 197 NDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAE---VQDLSLTTRLQCLQHIGE 253
+D +I H+ +D+ + E VK L E +Q+ S+ L IG
Sbjct: 304 SDRDILEHIVYDFDDAE-----------MMEMVKPSLDEAFVIQEQSVA-----LNFIGS 347
Query: 254 H-FQPVIDGLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTS 308
QP G+ E A +++ H+ ++ K L +M+ +L
Sbjct: 348 RGVQP---GITREKRVKYAREILQKETLPHVGISDFCETKKAYFLGYMVHRLLLAAMGRR 404
Query: 309 VSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKK 368
D+ D N+ + L G L ++ L++ K + Q I G FNL +
Sbjct: 405 ELDDRDHYGNKRLDLAGPL------GLFKNLLKEVKMVAQRYINKTGD----FNLELCVR 454
Query: 369 VMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGA 428
+ + ++ L TG Q Q RAG + RL + +S R ++
Sbjct: 455 ------TGILTKGLQYSLATGNWGDQKKAH-QTRAGVSQVLNRLTYAATLSHLRRLNSPI 507
Query: 429 SFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKM 488
G + R+L WG +CP TP+G+ GL+ ++ ++
Sbjct: 508 GREG-KLAKPRQLHNTLWGMICPAETPEGQAVGLVKNLALMAYIS-----------VGSQ 555
Query: 489 RTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK--- 545
+ IL L M +L ++ S A + ++G VG+ E ++++A LR+L+
Sbjct: 556 QEPILEFLEEWSM-ETLEEVAPSAISATTKIFVNGAWVGI--HREPQQLMATLRKLRRQM 612
Query: 546 ---VSAASVIPD--DLEVGYVPLSLGGAYPGLYLFTSPPKFVRP---------------V 585
VS S++ D D E+ ++T + RP +
Sbjct: 613 DIVVSEVSMVRDIRDREI--------------RIYTDAGRICRPLLIVEDQRLLLKKNHI 658
Query: 586 RNISLPSEESQN----------IELIGPFEQ--VFMEIRCPDGGDGGRRNAFPATHEEIH 633
N+ +E + + +E I E+ + + + D D G TH EIH
Sbjct: 659 ENLKRRNESNGHGWSELVANSIVEYIDTMEEETIMLAMTPDDLQDRGVGYCDTYTHCEIH 718
Query: 634 PTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIV 693
P+ +L V A++ P+ DHNQSPRN YQ M KQ MG R D + L PQ P+V
Sbjct: 719 PSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYTTNFHVRMDTLAHVLWYPQKPLV 778
Query: 694 RTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT----ET 749
T + +E P G N+IVA+L+YTGY+ ED++I+N SS+DRGM Y++ E+
Sbjct: 779 TTRSMEYLRFNELPAGINSIVAILSYTGYNQEDSVIMNSSSIDRGMFRSIFYRSYRDQES 838
Query: 750 IDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYC--SIYDKTTNS 807
+ + +++ + + H +D DG+ G + + +I + T+
Sbjct: 839 SREARNEETIEKPTRQICQGMRNAVYHK-LDDDGIVSPGTRVSGDDVIIGKTIMLEDTDD 897
Query: 808 WRTNSR----------KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSR 857
T R + SE+ VD V + + N + +R R R P IGDKF+SR
Sbjct: 898 SSTTKRSSKKDASTFLRASETGIVDQVMLSVNADGN--KFVKVRVRSIRIPQIGDKFASR 955
Query: 858 HGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
HGQKG ++ DMPF+ G+ PD+IINPHA PSRMTI L+E + K
Sbjct: 956 HGQKGTIGMIYRQEDMPFT-CEGITPDIIINPHAIPSRMTIGHLIECLQGK 1005
>gi|355712719|gb|AES04443.1| polymerase II polypeptide B, 140kDa [Mustela putorius furo]
Length = 1104
Score = 240 bits (612), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 245/932 (26%), Positives = 400/932 (42%), Gaps = 109/932 (11%)
Query: 34 MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFN---FGQFPVMLKTRRCHLQGADS 90
M + R ++Y+ L D+ + G ++ + G+ P+ML++ C L G
Sbjct: 61 MPNEARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTD 120
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
+ L L E + GGYFI+NG E+V +I ++ ++ + +D + YT + R
Sbjct: 121 RDLCELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFAKKDSKYAYTGEC---R 174
Query: 151 CVRKDQS--SVTLKLYYLLNGSV---------RLGFWLQGKEYLLPVGIVLKALVDTNDL 199
++ S + T+ + L G R+ L + +P+ IV +AL +D
Sbjct: 175 SCLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDR 234
Query: 200 EIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVI 259
+I H+ +++ P + E VK L E + + L IG +
Sbjct: 235 DILEHIIYDFED-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGS--RGAK 279
Query: 260 DGLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDS 315
G+ E A+ V++ + H+ ++ K L +M+ +L D+ D
Sbjct: 280 PGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDH 339
Query: 316 LQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPS 375
N+ + L G L+ + ++ L++ + Q I + GK F+ LA IK +
Sbjct: 340 YGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFI-DRGKDFNL-ELA-IK-------T 389
Query: 376 KQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRT 435
+ I ++ L TG Q Q RAG + RL F +S R ++ G +
Sbjct: 390 RIISDGLKYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRLNSPIGRDG-KL 447
Query: 436 TSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRV 495
R+L WG +CP TP+G GL+ ++ ++ + IL
Sbjct: 448 AKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYIS-----------VGSQPSPILEF 496
Query: 496 LIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAA 549
L M +L ++ + + ++G VG+ + E+++ LR+L+ VS
Sbjct: 497 LEEWSM-ENLEEISPAAIADATKIFVNGCWVGI--HKDPEQLMNTLRKLRRQMDIIVSEV 553
Query: 550 SVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN------------ 597
S+I D E + G L K + R+I E N
Sbjct: 554 SMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGV 613
Query: 598 IELIGPFEQ--VFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPR 655
+E I E+ V + + D + TH EIHP+ +L V A++ P+ DHNQSPR
Sbjct: 614 VEYIDTLEEETVMLAMTPDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPR 673
Query: 656 NMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVA 715
N YQ M KQ MG + R D + L PQ P+V T + E P G N+IVA
Sbjct: 674 NTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVA 733
Query: 716 VLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDA--- 772
+ +YTGY+ ED++I+N+S+VDRG Y++ S G D+ + + ++
Sbjct: 734 IASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKG--FDQEEVFEKPTRETCQG 791
Query: 773 --KSLHSVIDSDGLPYVGQMIHPGE----PYCSIYDKTTNSWRTNSR----------KGS 816
+++ +D DGL G + + ++ + TN R + S
Sbjct: 792 MRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELEGTNRRYTKRDCSTFLRTS 851
Query: 817 ESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFS 876
E+ VD V V + + IR R R P IGDKF+SRHGQKG C + DMPF+
Sbjct: 852 ETGIVDQVMVTLNQEGY--KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFT 909
Query: 877 GVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
G+ PD+IINPHA PSRMTI L+E + K
Sbjct: 910 -CEGITPDIIINPHAIPSRMTIGHLIECLQGK 940
>gi|443917907|gb|ELU38513.1| DNA-directed RNA polymerase III subunit [Rhizoctonia solani AG-1 IA]
Length = 1248
Score = 239 bits (611), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 253/998 (25%), Positives = 417/998 (41%), Gaps = 184/998 (18%)
Query: 12 LRELVRHHIESFDYMLDEGLSEM---------------------------------FD-- 36
++ LV+ HI+SF+Y +D L+ + FD
Sbjct: 90 VKGLVKQHIDSFNYFVDVDLANILKANNKVLSDVDPKFWLKYTGIHVGMPTRNDDSFDKS 149
Query: 37 ----HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQK 92
CR +Y + DV QY V R+ G+ P+ML++ +C L G
Sbjct: 150 VTPHECRLRDTTYAATITVDV--QYTRGNVIVRRKGVPIGRLPIMLRSNKCVLAGQSEAS 207
Query: 93 LVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCV 152
L + E + GGYFI+ G E+ VIL ++ S R E K +V V
Sbjct: 208 LARMTECPLDPGGYFIVKGTEK----VILVQEQL------SKNRIIVETDPVKGIVQASV 257
Query: 153 RKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEK 212
K Y L+ + R+ +PV I LKA+ D EI L C +
Sbjct: 258 TSSTHERKSKTYVLMKKN-RIYLRHNSINEDIPVCIALKAMGIQADKEIL--LLCAGTTE 314
Query: 213 YKKEKGAVGSPLVSERVKIILAEVQDLSLT---TRLQCLQHIGEHFQPVIDGLQS----- 264
K A ++D +L T Q L++IG + G Q+
Sbjct: 315 AHKSAFA--------------PNLEDCALAGVFTTQQALEYIGSRVKVTRRGFQAGPKRP 360
Query: 265 ---ESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEI 321
E+ A+A T++ ++ V D K + M +++ + + D+ D + N+ +
Sbjct: 361 VWEEAMEALA-TIVLAHVEVKGMDFKHKAIYIATMTRRVLMAMADEKLVDDRDYVGNKRL 419
Query: 322 LLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTS 381
L G L+++ ++ K F+ ++I KV++K +
Sbjct: 420 ELAGQLLSLLFEDIF-------------------KTFNQNLKSSIDKVLKKPSRTSEFDA 460
Query: 382 IETMLKTGRLATQTGLDLQQRAGYTV---QAERLNFLRFISFFRAVHRGASFAGLRTTSV 438
+++L L T + +++ + ER +S + ++ + ++ +
Sbjct: 461 YQSLLYQSDLITSGFVRAISTGNWSLKRFKMERAGVTHVLSRYVKLNLASVYSSSSVPPL 520
Query: 439 ------RKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSI 492
R L P WG LC TP+GE CGL+ ++ + + + I
Sbjct: 521 DSVSGPRALQPSQWGMLCTSDTPEGEACGLVKNLALMTHITTDVEEE-----------PI 569
Query: 493 LRVLIGVGMIPSLPKLVKSGP----PAVLSVLLDGRVVGV--IPSSEIEKVVAHLRRLKV 546
+++ +G+ +G P V ++G +VG+ P+ + VA+ R+L+
Sbjct: 570 KKIVYMLGVEDDTDITFSTGAEIYSPHTFVVNVNGSIVGLTRFPA----RFVANFRKLRR 625
Query: 547 SAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNI--SLPSEESQNIELIG-- 602
S I + ++ + + + +++ + + RP+ + P +++I L+
Sbjct: 626 SGR--ISE-----FISVYINHHHHTVHIASDGGRICRPMIIVENERPRVRTEHINLLKRG 678
Query: 603 --PFEQVFMEIRCPDGGDGGRRNAF----------PAT-HEEIHPTGMLSVVANLTPYSD 649
F+ F++ + D N P+T H EI P +L VA L PY
Sbjct: 679 VVTFDD-FLKKGSIEYLDVNEENDSHIALYESSIEPSTTHLEIEPFTILGAVAGLIPYPH 737
Query: 650 HNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTG 709
HNQSPRN YQC M KQ++G R D LY PQ P+V+T T G D P G
Sbjct: 738 HNQSPRNTYQCAMGKQSIGAIAYNQLNRIDTLLYLSVYPQQPMVKTKTIELIGYDRLPAG 797
Query: 710 TNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRR- 768
NA VAV++Y+GYD+EDA+ILNK +++ + D + DR R
Sbjct: 798 QNATVAVMSYSGYDIEDALILNK-------LRSRLWTMPGVQEERDTHPFDRLADAPREA 850
Query: 769 NKDAKSLHSVIDSDGLPYVGQMIHPGEPYC------SIYDKTTN---------SWRTN-- 811
+ + + +I +DG+ VG+ + PG+ Y + D T N S+R
Sbjct: 851 DGSVQKRYDIIQADGIAGVGERVDPGDVYVNKQSPINANDNTFNTGEGASASISYRNTPM 910
Query: 812 SRKGSESVFVDYVAV-DMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPD 870
S K + ++D V + D N + L + R TR P +GDKFSSRHGQKGVC +
Sbjct: 911 SYKSPMAGYIDKVMLTDTDNDQTL---VKVLLRQTRRPELGDKFSSRHGQKGVCGLIVNQ 967
Query: 871 IDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
DMPF+ G+ PD I+NPH FPSRMT+ ++E +A K
Sbjct: 968 EDMPFND-QGINPDTIMNPHGFPSRMTVGKMIELLAGK 1004
>gi|156372267|ref|XP_001628960.1| predicted protein [Nematostella vectensis]
gi|156215949|gb|EDO36897.1| predicted protein [Nematostella vectensis]
Length = 1182
Score = 239 bits (611), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 248/931 (26%), Positives = 402/931 (43%), Gaps = 107/931 (11%)
Query: 34 MFDHCRQAKISYTGKLMADV-EFQYLDAGSPVV--RERFNFGQFPVMLKTRRCHLQGADS 90
M + R ++Y+ D+ + + D P V + G+ P+ML++ C L G
Sbjct: 113 MPNEARLRNLTYSAPFYVDITKTRIKDNEEPQVTTHSKMFIGKIPIMLRSTYCLLNGLLD 172
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
+ L L E + GGYFI+NG E+V +I ++ ++ S +D + YT A +
Sbjct: 173 RDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFSKKDSKYSYT--AEIRS 227
Query: 151 CVR-KDQSSVTLKLYYLLNGSV---------RLGFWLQGKEYLLPVGIVLKALVDTNDLE 200
C+ + + T+ + L GS R+ L + +P+ IV +AL D +
Sbjct: 228 CLEHSSRPTSTMWVSMLAKGSSGGRRSAIGQRIVGSLPYIKQEIPIMIVFRALGFVADRD 287
Query: 201 IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
I H+ ++++ + E VK L E + + L IG +
Sbjct: 288 ILEHIIYDFEDQE-----------MMEMVKPSLDEA--FVIQEQNVALNFIGS--RGARP 332
Query: 261 GLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
G+ E A+ +++ + H+ ++ K L +M+ +L D+ D
Sbjct: 333 GVTKERRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 392
Query: 317 QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
N+ + L G L+ + + +++ + Q I + GK F NI+ ++ K
Sbjct: 393 GNKRLDLAGPLLAFLFRGLFRNLMKEVRMYAQKFI-DRGKDF------NIELALK---PK 442
Query: 377 QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
I + L TG Q Q RAG + RL F +S R ++ G +
Sbjct: 443 VITDGLRYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRLNSPIGREG-KLA 500
Query: 437 SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
R+L WG +CP TP+G GL+ ++ + S I +F + T
Sbjct: 501 KPRQLHNTHWGMICPAETPEGHAVGLVKNLALMAYI-SVGSQPSPILEFMEEWT------ 553
Query: 497 IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAAS 550
+ +L ++ S + ++G VG+ + +++++ LR+L+ VS S
Sbjct: 554 -----MENLEEITPSAINTSTKIFVNGCWVGI--HRDPDQLMSTLRKLRRRMDIIVSEVS 606
Query: 551 VIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN------------I 598
++ D E S G L K + +I E N +
Sbjct: 607 MVRDFREREIRIYSDAGRICRPLLIVENQKLLLKKNHIDQLKEREYNEYSWQELVANGIV 666
Query: 599 ELIG-PFEQVFMEIRCPDG-GDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRN 656
E I E+ M PD + G+ TH EIHP+ +L V A++ P+ DHNQSPRN
Sbjct: 667 EYIDVNEEETVMVAMTPDELVEKGQAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRN 726
Query: 657 MYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAV 716
YQ M KQ MG + R D + L PQ P+V T + E P G NAIVA+
Sbjct: 727 TYQSAMGKQAMGVYITNYHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINAIVAI 786
Query: 717 LAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDA---- 772
+YTGY+ ED++I+N S++DRG+ Y++ S G +D+ + + +DA
Sbjct: 787 ASYTGYNQEDSVIMNASAIDRGLYRSVFYRSYRDQESKKG--LDQEETFEKPTRDAVQGM 844
Query: 773 -KSLHSVIDSDGLPYVGQMIHPGEPYCSIY-------DKTTNSWRTNSRKG-------SE 817
+ + +D DGL G + + D+ + R S+K SE
Sbjct: 845 RNASYDKLDEDGLIAPGIRVSGDDVIVGKTVTLPDNDDELEGTARKYSKKDASTFLRPSE 904
Query: 818 SVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSG 877
+ VD V V + N + + I+ R R P IGDKF+SRHGQKG C + DMPF+
Sbjct: 905 TGIVDQVMVTI-NQEGF-KFTKIKVRSVRVPQIGDKFASRHGQKGTCGITYRQEDMPFT- 961
Query: 878 VTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
G+ PD+IINPHA PSRMTI L+E + K
Sbjct: 962 CEGLSPDVIINPHAIPSRMTIGHLIECLQGK 992
>gi|303273466|ref|XP_003056094.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226462178|gb|EEH59470.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 1172
Score = 239 bits (611), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 242/955 (25%), Positives = 397/955 (41%), Gaps = 162/955 (16%)
Query: 39 RQAKISYTGKLMADVEFQY----LDAGSPVVRERFN---FGQFPVMLKTRRCHLQGADSQ 91
R ++Y+ L D+E LD+ E+ N G+ P+ML++ C L +
Sbjct: 110 RLRNLTYSAPLYVDMEKTVTTVTLDSQKTEEVEKINKVFIGKVPIMLRSEYCSLHDHTDK 169
Query: 92 KLVSLKEEAAEMGGYFILNGLERVFRS---------VILPKQNYPMSMVRSSFRDRREGY 142
+L L E + GGYFI+NG E+V + + K+ M + R E
Sbjct: 170 ELTELGECPYDEGGYFIINGSEKVLIAQEKMSSNHVYVFKKRQPSKYMWVAECRSSPESG 229
Query: 143 TDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIF 202
A CV + S K+ G +R+ + +P+ +V +AL D +I
Sbjct: 230 ARAASA--CVARMLHSPGTKME---PGCIRVTLPYIRTD--IPLFVVFRALGFVADKDIL 282
Query: 203 NHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGL 262
H+ +++ E + P + E + I +V L +IG+ V G+
Sbjct: 283 EHIVYDFNDHDAME---LLRPSIEEALPIQSKKV----------ALDYIGKRGSAV--GV 327
Query: 263 QSESYYAVAETVIRDYIFVHLNDNND----KFNLLIFMLQKLFSLVDHTSVSDNPDSLQN 318
E A+ +++ + H+ + + K L +++ +L D+ D N
Sbjct: 328 SREKRIKYAQDILQKELLPHVGVDEECETRKAYYLGYIVHRLLLCALGRRNEDDRDHFGN 387
Query: 319 QEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQI 378
+ + L G LI I ++ L K +L ++GK+ LA +K +K I
Sbjct: 388 KRMDLAGPLIAILFRQLFRK-LTKDVRLYCQRCVDSGKEIQL-TLA-VK-------AKTI 437
Query: 379 GTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSV 438
+ ++ L TG Q D+ RAG + RL+F +S R ++ G +
Sbjct: 438 TSGLKYSLATGNWGAQGAQDI--RAGVSQVLNRLSFSSTLSHLRRLNSPIGREG-KLAKP 494
Query: 439 RKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIG 498
R+L WG +CP TP+G+ CGL+ +++ L L+
Sbjct: 495 RQLHNSHWGMVCPAETPEGQACGLVKNLS-------------------------LMALVS 529
Query: 499 VGMIPSLPKL----------VKSGPPAVLS----VLLDGRVVGV--IPSSEIEKVVAHLR 542
VG PS P L ++ P+V+S + ++G VGV P+ + + R
Sbjct: 530 VGS-PSSPVLEFLEEWTMENLEEISPSVISHATKIFVNGVWVGVHRDPADLVRTLRELRR 588
Query: 543 RLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPV------------RNISL 590
++ ++ I D+ + L L+T + +RP+ RNI +
Sbjct: 589 KVDITTEVGIVHDIRL-----------QELRLYTDYGRCIRPLFIVEDQRMKIKKRNIEM 637
Query: 591 PSE----------------------ESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPAT 628
E E + +I + ++ R + ++ + T
Sbjct: 638 LQEKDITGFTWNDLVSSGCIEYVDTEEEETTMISMTIEDLVQARLLANNETSVQHMY--T 695
Query: 629 HEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTP 688
H EIHP+ +L + ++ P+ DHNQSPRN YQ M KQ MG V + R D Y L P
Sbjct: 696 HCEIHPSMILGICGSIIPFPDHNQSPRNTYQSAMGKQAMGMYVTNFQLRMDTLAYVLFYP 755
Query: 689 QTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTE 748
Q P+V T E P G N +V ++ YTGY+ ED++I+N+SS+DRG+ Y++
Sbjct: 756 QKPLVTTRAMEHLHFRELPAGVNVVVGIMCYTGYNQEDSVIMNQSSIDRGLFRSIFYRSF 815
Query: 749 TIDLSDDGNKVDRGQKLFRRNKDAKSLHSV---IDSDGLPYVGQMIH------------P 793
+ G+ + H +D DGL G + P
Sbjct: 816 KDEEKKQGSLTKEDLECPSPETTLGMRHGTYGKLDKDGLICPGTRVSGEDIIIGKTSPLP 875
Query: 794 GEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDK 853
+ + ++ T + K SE+ +D V + N + L + IR R R P +GDK
Sbjct: 876 DDDPSAASNRFTKRDCSTGMKNSETGIIDQVLL-TTNDQGL-RFVKIRVRSCRTPQVGDK 933
Query: 854 FSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
FSSRHGQKG + DMPF+ G+ PD+I+NPHA PSRMTI L+E + K
Sbjct: 934 FSSRHGQKGTIGMTYTQEDMPFT-CEGVVPDIIVNPHAIPSRMTIGQLVECLMGK 987
>gi|324120602|dbj|BAJ78692.1| RNA polymerase II second largest subunit [Nipponatelura sp. 66-1]
Length = 1175
Score = 239 bits (611), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 248/947 (26%), Positives = 409/947 (43%), Gaps = 138/947 (14%)
Query: 34 MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVR---ERFNFGQFPVMLKTRRCHLQGADS 90
M + R ++Y+ L D+ + G V ++ G+ P+ML++ C L G
Sbjct: 109 MPNEARLRNLTYSAPLYVDITKTIIKDGDEPVETQNQKTFIGKIPIMLRSTYCLLNGLTD 168
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
+ L L E + GGYFI+NG E+V +I ++ ++ S +D + + + IR
Sbjct: 169 RDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFSMKDGKYAFKSE---IR 222
Query: 151 CVRKDQSSVTLKLYYLLNGSVRLGFWLQ----GKEYL---------LPVGIVLKALVDTN 197
++ S T L+ +N R G ++ G+ + +P+ IV +AL
Sbjct: 223 SCQEHSSRPTSTLW--VNMMARGGQSIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVA 280
Query: 198 DLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQP 257
D +I H+ +D+ P + E VK L E + + L IG +
Sbjct: 281 DRDILEHIIYDFDD-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGA--RG 325
Query: 258 VIDGLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNP 313
G+ E A +++ + H+ ++ K L +M+ +L D+
Sbjct: 326 ARPGVTKEKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDR 385
Query: 314 DSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKN 373
D N+ + L G L+ + ++ +++ + Q I+ GK F+ LA IK
Sbjct: 386 DHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFIDR-GKDFNL-ELA-IK------ 436
Query: 374 PSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGL 433
+K I + L TG Q Q RAG + RL F +S R V+ G
Sbjct: 437 -TKIITDGLRYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRVNSPIGRDG- 493
Query: 434 RTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSIL 493
+ R+L WG +CP TP+G GL+ ++ ++ + IL
Sbjct: 494 KLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYIS-----------VGSQPSPIL 542
Query: 494 RVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VS 547
L M +L ++ S + ++G VG+ + E+++A LR+L+ VS
Sbjct: 543 EFLEEWSM-ENLEEIAPSAISDATKIFVNGCWVGI--HRDPEQLMATLRKLRRQMDIIVS 599
Query: 548 AASVIPD--DLEVGYVPLSLGGAYPGLYLFTSPPKFVRPV------------RNISLPSE 593
S+I D D E+ ++T + RP+ ++I + E
Sbjct: 600 EVSMIRDIRDREI--------------RIYTDAGRICRPLLIVENGHLLLKKKHIDMLKE 645
Query: 594 ESQN------------IELIGPFEQ-VFMEIRCPDGGDGGRRNAFPA--THEEIHPTGML 638
+ N +E I E+ M PD + A+ TH EIHP +L
Sbjct: 646 KEYNNYGWQVLVAQGVVEYIDTLEEETVMIAMTPDDLRQDKEYAYCTNYTHCEIHPAMIL 705
Query: 639 SVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTY 698
V A++ P+ DHNQSPRN YQ M KQ MG + R D + L P P+V T +
Sbjct: 706 GVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSM 765
Query: 699 TKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT-ETIDLSDDGN 757
E P G N++VA+ YTGY+ ED++I+N S+V+RG +++ + + G+
Sbjct: 766 EYLRFRELPAGINSVVAIACYTGYNQEDSVIMNASAVERGFFRSVFFRSYKDAESKGMGD 825
Query: 758 KVDRGQKLFRRNKDA--KSLHSVIDSDGL-----------PYVGQMIHPGEPYCSIYDKT 804
+ ++ +K R +++ +D DG+ +G+ I E + T
Sbjct: 826 QEEQFEKPSRTTCQGMRNAIYDKLDDDGIIAPGIRVSGDDVVIGKTITLPENDDELEGTT 885
Query: 805 TNSWRTNSR---KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQK 861
+ ++ + SE+ VD V + + NS+ + IR R R P IGDKF+SRHGQK
Sbjct: 886 KRYTKRDASTFLRNSETGIVDQVMLTL-NSEGY-KFCKIRVRSVRIPQIGDKFASRHGQK 943
Query: 862 GVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
G C + DMPF+ G+ PD+IINPHA PSRMTI L+E + K
Sbjct: 944 GTCGIQYRQEDMPFT-CEGLTPDIIINPHAIPSRMTIGHLIECLQGK 989
>gi|324120650|dbj|BAJ78716.1| RNA polymerase II second largest subunit [Anacanthocoris
striicornis]
Length = 1175
Score = 239 bits (611), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 243/930 (26%), Positives = 400/930 (43%), Gaps = 104/930 (11%)
Query: 34 MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFN---FGQFPVMLKTRRCHLQGADS 90
M + R ++Y+ L D+ + G + + G+ P+ML++ C L G
Sbjct: 109 MPNEARLRNLTYSAPLYVDITKTIIREGEEPIESQHQKSFIGKIPIMLRSTYCLLNGLTD 168
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
+ L L E + GGYFI+NG E+V +I ++ ++ S +D + Y KA +
Sbjct: 169 RDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFSMKDGKFAY--KAEIRS 223
Query: 151 CVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
C+ + + TL + + G + G+ + +P+ IV +AL D +
Sbjct: 224 CLEHSSRPTSTLWVNMMARGGQSIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRD 283
Query: 201 IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
I H+ +D+ P + E VK L E + + L IG +
Sbjct: 284 ILEHIIYDFDD-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGA--RGARP 328
Query: 261 GLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
G+ E A +++ + H+ ++ K L +M+ +L D+ D
Sbjct: 329 GVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 388
Query: 317 QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
N+ + L G L+ + ++ +++ + Q I + GK F+ LA IK +K
Sbjct: 389 GNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFI-DRGKDFNL-ELA-IK-------TK 438
Query: 377 QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
I + L TG Q Q RAG + RL F +S R V+ G +
Sbjct: 439 IITDGLRYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRVNSPIGRDG-KLA 496
Query: 437 SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
R+L WG +CP TP+G GL+ ++ ++ + IL L
Sbjct: 497 KPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYIS-----------VGSQPSPILEFL 545
Query: 497 IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAAS 550
M +L ++ S + ++G VG+ + E+++ LR+L+ VS S
Sbjct: 546 EEWSM-ENLEEIAPSAIADATKIFVNGCWVGI--HRDPEQLMGTLRKLRRQMDIIVSEVS 602
Query: 551 VIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN------------I 598
+I D + + G L + + R+I E N +
Sbjct: 603 IIRDIRDREIRIYTDAGRICRPLLIVENGQLLLKKRHIENLKERDYNNYGWQVLVSSGVV 662
Query: 599 ELIGPFEQ-VFMEIRCPDGGDGGRRNAFPAT--HEEIHPTGMLSVVANLTPYSDHNQSPR 655
E I E+ M P+ + A+ T H EIHP +L V A++ P+ DHNQSPR
Sbjct: 663 EYIDTLEEETTMIAISPEDLRQDKEYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPR 722
Query: 656 NMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVA 715
N YQ M KQ MG + R D + L P P+V T + E P G N+IVA
Sbjct: 723 NTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVA 782
Query: 716 VLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT-ETIDLSDDGNKVDRGQKLFRRNKDA-- 772
+ YTGY+ ED++ILN S+V+RG +++ + + G++ ++ +K R+
Sbjct: 783 IACYTGYNQEDSVILNASAVERGFFRSVFFRSYKDAESKRVGDQEEQFEKPMRQTCQGMR 842
Query: 773 KSLHSVIDSDGL-----------PYVGQMIHPGEPYCSIYDKTTNSWRTNSR---KGSES 818
+++ +D DG+ +G+ I E + T + ++ + SE+
Sbjct: 843 NAIYDKLDDDGIIAPGLRVSGDDVVIGKTITLPENDDELEGTTKKFTKRDASTFLRNSET 902
Query: 819 VFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGV 878
VD V + + N++ + IR R R P IGDKF+SRHGQKG C + DMPF+
Sbjct: 903 GIVDQVMLTL-NAEGY-KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFT-C 959
Query: 879 TGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
G+ PD+IINPHA PSRMTI L+E + K
Sbjct: 960 EGLSPDIIINPHAIPSRMTIGHLIECLQGK 989
>gi|91090964|ref|XP_974653.1| PREDICTED: similar to AGAP003648-PA [Tribolium castaneum]
gi|270013197|gb|EFA09645.1| hypothetical protein TcasGA2_TC011771 [Tribolium castaneum]
Length = 1175
Score = 239 bits (611), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 248/944 (26%), Positives = 404/944 (42%), Gaps = 132/944 (13%)
Query: 34 MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVR---ERFNFGQFPVMLKTRRCHLQGADS 90
M + R ++Y+ L D+ + G + ++ G+ P+ML++ C L G
Sbjct: 109 MPNEARLRNLTYSAPLYVDITKTIVKDGEDPIETQHQKTFIGKIPIMLRSTYCLLNGLTD 168
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
+ L L E + GGYFI+NG E+V +I ++ ++ S +D + Y K+ +
Sbjct: 169 RDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFSMKDGK--YAFKSEIRS 223
Query: 151 CVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
C+ + + TL + + G + G+ + +P+ IV +AL D +
Sbjct: 224 CLEHSSRPTSTLWVNMMARGGQAIKKAAIGQRIIAILPYIKQEIPIMIVFRALGFVADRD 283
Query: 201 IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
I H+ +++ P + E VK L E + + L IG +
Sbjct: 284 ILEHIIYDFED-----------PEMMEMVKPSLDEA--FVIQEQNIALNFIGT--RGARP 328
Query: 261 GLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
G+ E A +++ + H+ ++ K L +M+ +L D+ D
Sbjct: 329 GVTKEKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 388
Query: 317 QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
N+ + L G L+ + ++ +++ + Q I + GK F+ +LA IK +K
Sbjct: 389 GNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFI-DRGKDFNL-DLA-IK-------TK 438
Query: 377 QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
I + L TG Q Q RAG + RL F +S R V+ G +
Sbjct: 439 LITDGLRYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRVNSPIGRDG-KLA 496
Query: 437 SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
R+L WG +CP TP+G GL+ ++ ++ + IL L
Sbjct: 497 KPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYIS-----------VGSQPSPILEFL 545
Query: 497 IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAAS 550
M +L ++ S + ++G VG+ + E+++A LR+L+ VS S
Sbjct: 546 EEWSM-ENLEEIAPSAIANATKIFVNGCWVGI--HRDPEQLMATLRKLRRQMDIIVSEVS 602
Query: 551 VIPD--DLEVGYVPLSLGGAYPGLYLFTSPPKFVRPV------------RNISLPSEESQ 596
+I D D E+ ++T + RP+ R+I + E
Sbjct: 603 MIRDIRDREI--------------RIYTDAGRICRPLLIVENGTLLLKKRHIDMLKEREY 648
Query: 597 N------------IELIGPFEQ-VFMEIRCPDGGDGGRRNAFPAT--HEEIHPTGMLSVV 641
N +E I E+ M PD + A+ T H EIHP +L V
Sbjct: 649 NNYGWQVLVASGVVEYIDTLEEETVMIAMSPDDLRQEKEYAYCTTYTHCEIHPAMILGVC 708
Query: 642 ANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKY 701
A++ P+ DHNQSPRN YQ M KQ MG + R D + L P P+V T +
Sbjct: 709 ASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYL 768
Query: 702 GIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT-ETIDLSDDGNKVD 760
E P G N+IVA+ YTGY+ ED++ILN S+V+RG Y++ + + G++ +
Sbjct: 769 RFRELPAGINSIVAIACYTGYNQEDSVILNASAVERGFFRSVFYRSYKDAESKRIGDQEE 828
Query: 761 RGQKLFRRNKDA--KSLHSVIDSDGLPYVGQMIHPGEPYCSI----------YDKTTNSW 808
+ +K R+ +L+ +D DG+ G + + D TT +
Sbjct: 829 QFEKPTRQTCQGMRNALYDKLDDDGIIAPGIRVSGDDVVIGKTMTLPENDDELDGTTKRF 888
Query: 809 RTNSR----KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVC 864
+ SE+ VD V + + NS+ + IR R R P IGDKF+SRHGQKG C
Sbjct: 889 TKRDASTFLRNSETGVVDQVMLTL-NSEGY-KFCKIRVRSVRIPQIGDKFASRHGQKGTC 946
Query: 865 SQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
+ DM F+ G+ PD+IINPHA PSRMTI L+E + K
Sbjct: 947 GIQYRQEDMIFT-CEGLTPDIIINPHAIPSRMTIGHLIECIQGK 989
>gi|218884686|ref|YP_002429068.1| DNA-directed RNA polymerase subunit B [Desulfurococcus
kamchatkensis 1221n]
gi|218766302|gb|ACL11701.1| DNA-directed RNA polymerase, subunit B [Desulfurococcus
kamchatkensis 1221n]
Length = 1149
Score = 239 bits (610), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 255/964 (26%), Positives = 408/964 (42%), Gaps = 127/964 (13%)
Query: 17 RHHIESFDYMLDEGLSEMFD--HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQF 74
++ I+S + EG+ E CR ++Y + V + D +
Sbjct: 48 KYRIDSPKWTSVEGIEESKTPMECRLRNLTYATPIYVSVRIE--DESGYTREQELKLMDL 105
Query: 75 PVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSS 134
PVMLK+ L Q+L+ E+ + GGYFI+NG E+V I+ +++ + +
Sbjct: 106 PVMLKSSIDPLSKLTPQELIENGEDPRDPGGYFIINGSEKV----IVAQEDLASNNIIVD 161
Query: 135 FRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALV 194
T A V R +S + ++ +G F QG ++ P I++ AL
Sbjct: 162 VMQEGSSVTHVAKVTSVSRGRRSQLIIERRK--DGVFYASF--QGHKF--PALILMIALG 215
Query: 195 DTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKII----------LAEVQDLSLTTR 244
++ E+ Y K E P + + +I+ EV+ L R
Sbjct: 216 LASEAEML------YSTSLKPEIQTYLLPSILQVQEILPKLEIPEGASEEEVRRLKEEYR 269
Query: 245 LQCLQH----IGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDNND---KFNLLIF-- 295
+ ++ I F I G E AE ++ + + H+ ++ + +F
Sbjct: 270 RKVIEEALDFIASKF---IIGRPREERILRAERLLDERLLPHIGIDSSPETRLKKAVFIG 326
Query: 296 -MLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENN 354
M+ ++ L D+ D +N+ + L G ++ + L+ + + R+ K+ I+ ++
Sbjct: 327 QMISRIIELQLGYREPDDKDHYRNKRLKLAGDMLAVLLRAAMMGFAREIKEGIEKQLAKT 386
Query: 355 GKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNF 414
KK D M PS I I+ + TG R G + +R N
Sbjct: 387 -KKIDL--------KMVFKPSI-ITDRIQHAMATGNWPGG-------RTGVSQLLDRTNM 429
Query: 415 LRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVAS 474
L +S R V + G R+L WG +CP TP+G GL+ ++ V+
Sbjct: 430 LSTLSHLRRVVSPLA-RGQPHFEARELHGTQWGRMCPFETPEGANIGLVKNLALMTNVSV 488
Query: 475 YYDSRG------NIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGP------PAVLSVLLD 522
D + I + T + I G+I + + V V L+
Sbjct: 489 GIDDKEIEALLYRIGVVPIVSTRTIDGKIHKGLIDMISEDVSKASEISEKYSGWCKVFLN 548
Query: 523 GRVVGV-IPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAY------------ 569
G+++G E+ + + LRR + I ++ V Y+ G Y
Sbjct: 549 GKLIGYHKDGEELARTIRSLRR-----SGKISSEVNVAYI----GNKYIKEVVVNTDSGR 599
Query: 570 ---PGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFP 626
P + + PK R ++ L SE E + +Q +E PD + P
Sbjct: 600 IRRPLIVIENGVPKLTR--EHVKLLSEGKLTFEDL--VKQGIVEYLDPDEEENAYIALQP 655
Query: 627 A------THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQ 680
+ TH EI +L + A++ PY +HNQSPRNMYQ MAKQ++G + R D
Sbjct: 656 SDVTAEHTHLEIWIPAILGITASIIPYPEHNQSPRNMYQSAMAKQSLGLYAANFQRRMDT 715
Query: 681 KLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMC 740
+ + L PQ P+V T G +E P G N +VAVL YTGY+MEDA+I+N+SSV+RG+
Sbjct: 716 RGHFLHYPQRPLVETRMMNVIGYNERPAGQNMVVAVLTYTGYNMEDALIMNRSSVERGLA 775
Query: 741 HGQIYQT-ETIDLSDDGNKVD------------RGQKLFRR-NKDAKSLHSVIDSDGLPY 786
++ T++ G D RGQK + + +D S G
Sbjct: 776 RSTFFRLYTTVEYKYPGGIQDEITIPSTNVRGYRGQKAYEKLEEDGIVAPETQVSGGDVL 835
Query: 787 VGQMIHPGEPYCSIYDKTTNSWRTNS--RKGSESVFVDYVAVDMKNSKNLPQKANIRFRH 844
+G++ P Y+ + + S + E VD V + M + N + +R R
Sbjct: 836 IGKVSPPRFLSTQEYEVGGLTRQDTSIVMRHEEKGIVDTVLITMDSEGN--KLIKVRVRD 893
Query: 845 TRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLES 904
R P +GDKF+SRHGQKGV L P DMPF+ G+ PDLIINPHAFPSRMT+A L+ES
Sbjct: 894 LRIPELGDKFASRHGQKGVLGLLLPQYDMPFTE-EGVTPDLIINPHAFPSRMTVAQLMES 952
Query: 905 VAAK 908
+A K
Sbjct: 953 IAGK 956
>gi|268574492|ref|XP_002642223.1| C. briggsae CBR-RPB-2 protein [Caenorhabditis briggsae]
Length = 1194
Score = 239 bits (610), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 242/932 (25%), Positives = 396/932 (42%), Gaps = 111/932 (11%)
Query: 34 MFDHCRQAKISYTGKLMADVE--FQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQ 91
M + R ++Y L D+ ++ + V E+ G+ PVML++ C L +
Sbjct: 117 MPNEARLRNLTYASPLYVDITKVVTRDESVNEKVYEKVFVGKVPVMLRSSYCMLSNMTDR 176
Query: 92 KLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRC 151
L L E + GGYF++NG E+V +I ++ ++ S +D + Y K C
Sbjct: 177 DLTELNECPLDPGGYFVINGSEKV---LIAQEKMATNTVYVFSMKDGK--YAFKTECRSC 231
Query: 152 VRKD-QSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLEI 201
+ + + T+ + L G G+ + +P+ IV +AL +D +I
Sbjct: 232 LENSSRPTSTMWVNMLARGGGGGKKTAMGQRIIGILPYIKQEIPIMIVFRALGFVSDRDI 291
Query: 202 FNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDG 261
H+ +++ P + E VK L E + + L IG + G
Sbjct: 292 LGHIIYDFED-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGA--RGAKPG 336
Query: 262 LQSESYYAVAETVIRDYIFVHL----NDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQ 317
+ E A +++ + H+ + K + +M+ +L D+ D +
Sbjct: 337 VTREQRIKYAREILQKELLPHVGVSEHCETKKAFFIGYMVHRLLLAALGRRELDDRDHIG 396
Query: 318 NQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQ 377
N+ + L G L+ + + L++ + Q I N D F L K +
Sbjct: 397 NKRLDLAGPLLAFLFRALFRNLLKEMRMTAQKYINKN----DDFALDVCVK------TST 446
Query: 378 IGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS 437
I + L TG Q Q RAG + RL + +S R + G +
Sbjct: 447 ITRGLAYSLATGNWGDQKKAH-QSRAGVSQVLNRLTYTATLSHLRRANSPIGREG-KLAK 504
Query: 438 VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLI 497
R+L WG +CP TP+G+ GL+ ++ Y S G++ + IL L
Sbjct: 505 PRQLHNTQWGMVCPAETPEGQAVGLVKNLALMA-----YISVGSLPE------PILEFLE 553
Query: 498 GVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAASV 551
M +L ++ S + ++G VG+ E E ++ L++L+ VS S+
Sbjct: 554 EWSM-ENLEEVSPSAIADATKIFVNGAWVGI--HREPELLMDTLKKLRRQMDIIVSEVSM 610
Query: 552 IPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN-------------I 598
+ D + + G L K R+I L + + +
Sbjct: 611 VRDIRDREIRIYTDAGRVCRPLLIVEKQKLALRKRHIDLLKDVDETKKYTWSDLVGNGVV 670
Query: 599 ELIGPFEQ--VFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRN 656
ELI E+ + + D GG + + TH EIHP +L V A++ P+ DHNQSPRN
Sbjct: 671 ELIDSMEEETSMIAMMPEDLRSGGYCDTY--THCEIHPAMILGVCASIIPFPDHNQSPRN 728
Query: 657 MYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAV 716
YQ M KQ MG R D + L PQ P+V T + +E P G NAIVA+
Sbjct: 729 TYQSAMGKQAMGVYTTNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFNELPAGINAIVAI 788
Query: 717 LAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAK--- 773
L+Y+GY+ ED++I+N S++DRG+ Y++ ++ N + ++L + K
Sbjct: 789 LSYSGYNQEDSVIMNNSAIDRGLFRSVFYRSYR---DNEANIDNANEELIEKPTREKCSG 845
Query: 774 ---SLHSVIDSDGLPYVGQMIHPGE----PYCSIYDKTTNSWRTNSR----------KGS 816
SL+ +D DG+ G + + ++ D + T + + S
Sbjct: 846 MRHSLYDKLDEDGIISPGMRVSGDDVIIGKTVALPDIDDDLDATGKKYPKRDASTFLRSS 905
Query: 817 ESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFS 876
E+ VD V + + N N + IR R R P IGDKF+SRHGQKG ++ DMPF+
Sbjct: 906 ETGIVDQVMLSLNNDGN--KFVKIRMRSVRLPQIGDKFASRHGQKGTMGIMYRQEDMPFT 963
Query: 877 GVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
G+ PD+IINPHA PSRMTI L+E + K
Sbjct: 964 A-EGLTPDIIINPHAVPSRMTIGHLIECLQGK 994
>gi|302832249|ref|XP_002947689.1| hypothetical protein VOLCADRAFT_103593 [Volvox carteri f.
nagariensis]
gi|300267037|gb|EFJ51222.1| hypothetical protein VOLCADRAFT_103593 [Volvox carteri f.
nagariensis]
Length = 1206
Score = 239 bits (610), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 247/941 (26%), Positives = 399/941 (42%), Gaps = 132/941 (14%)
Query: 38 CRQAKISYTGKLMADV-EFQYLDAGSPVVRER------FNFGQFPVMLKTRRCHL-QGAD 89
R ++Y L DV + +Y V E+ + G+ P+MLK+ RC+L + A
Sbjct: 114 ARLRNLTYCAPLYVDVTKTEYTRQADDTVEEKQETLSHVHLGKVPIMLKSERCNLHEAAT 173
Query: 90 SQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKA--- 146
Q+ +L E + GGYF++NG E+V ++ ++ + V + + YT A
Sbjct: 174 EQEATNLGECPYDQGGYFVINGSEKV----LIAQERMANNHVYVFKKSQPSKYTFCAEIR 229
Query: 147 VVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---LPVGIVLKALVDTNDLEIFN 203
V+ + SS+++ + + G Y+ P+ I+ +AL +D +I
Sbjct: 230 SVVEGSTRSASSMSIMMLAKGKKAGAAGVIRAQIPYIRAEFPIFILFRALGFVSDRDILE 289
Query: 204 HLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQ 263
H+ D P + E ++ + E Q++ T+ + L ++G+ + + G
Sbjct: 290 HIVYDLD----------SDPAMLEALRASVEEAQEVQ--TQEEALNYLGK--RGTVTGAS 335
Query: 264 SESYYAVAETVIRDYIFVHLNDN----NDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQ 319
A ++ + HL K + +M+ +L + D+ D N+
Sbjct: 336 KADRIQYARNLLIKELLPHLGTEEFMETRKGYFVGYMVHRLMLVALGRRPEDDRDHYANK 395
Query: 320 EILLPGHLITIYLK---EKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
+ L G L+ + KL LR + + D GK+ + + N K
Sbjct: 396 RLDLGGPLMAGLFRLLFRKLCKELRMHAQRMVDA----GKEINVLSAIN---------EK 442
Query: 377 QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
I ++ L TG Q + RAG + RL + +S R V+ G +
Sbjct: 443 IITRGLKYSLATGNWGEQGKQGI--RAGVSQVLARLTYASTLSHLRRVNSPIGREG-KLA 499
Query: 437 SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
R+L WG CP TP+G+ GL+ +M C + S + + T
Sbjct: 500 KPRQLHNSLWGMFCPAETPEGQAVGLVKNMALMCYITVGTPSLPVVAHLEEFNTE----- 554
Query: 497 IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVI--PSSEIEKVVAHLRRLKVSA-ASVIP 553
+L ++ + A V ++G +G+ P++ I+ + A R++ S S+I
Sbjct: 555 -------ALDEVTPADIAAATKVFINGVWLGIQRDPTALIKNLRAMRRQVAFSTEVSIIY 607
Query: 554 DDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPV----------------RNIS-LPSEESQ 596
D G L +FT + RP+ R IS LP EE
Sbjct: 608 D------------GPLKELRIFTDYGRTSRPLYIVEDNRLLVTKNHIRRLISPLPDEEEY 655
Query: 597 N---------IELIGPFEQ----VFMEIR-CPDGGDGGRRNAFPATHEEIHPTGMLSVVA 642
+E I E+ + M I + + G TH EIHP +L V A
Sbjct: 656 AWPQLVQDGLVEYIDAEEEETTMIAMTIADLRNAREAGSATGTTYTHCEIHPAMILGVCA 715
Query: 643 NLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYG 702
++ P+ DHNQSPRN YQ M KQ MG + R D + + L PQ P+V T
Sbjct: 716 SIIPFPDHNQSPRNTYQSAMGKQAMGMYATNYQTRMDTQGFVLYYPQKPLVCTRAMDYLK 775
Query: 703 IDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRG 762
E P G NAIVA++ Y+GY+ ED+++LN SS+DRG Y+ + G+
Sbjct: 776 FRELPAGINAIVAIMCYSGYNQEDSLMLNGSSIDRGFHRSIFYRAYKEEEKKAGSLSREE 835
Query: 763 QKLFRRNKDAKSLHSV---IDSDGLPYVGQMIHPGEPYC----SIYDKTTNSWRTNSRK- 814
+ AK H +D+DGL G + + C ++ D T + + ++K
Sbjct: 836 IEAPDPVVTAKMKHGTYDKLDADGLCPPGTRVSGEDIICGKTVTLPDDPTGAVQRFTKKD 895
Query: 815 ------GSESVFVDYVAVDMKNSKNLPQK-ANIRFRHTRNPIIGDKFSSRHGQKGVCSQL 867
G E+ +D V M + + QK IR R P +GDKF+SRHGQKG C
Sbjct: 896 ASLALRGHEAGVIDQV---MLTTNDEGQKFVKIRVRTICIPQVGDKFASRHGQKGTCGIT 952
Query: 868 WPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
+ DMPFS G+ PD+I+NPHA PSRMTI L+E++ +K
Sbjct: 953 YTMEDMPFSA-EGIVPDIIVNPHAIPSRMTIGHLVEALMSK 992
>gi|355687402|gb|EHH25986.1| DNA-directed RNA polymerase II subunit RPB2 [Macaca mulatta]
Length = 1174
Score = 239 bits (610), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 244/931 (26%), Positives = 399/931 (42%), Gaps = 107/931 (11%)
Query: 34 MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFN---FGQFPVMLKTRRCHLQGADS 90
M + R ++Y+ L D+ + G ++ + G+ P+ML++ C L G
Sbjct: 109 MPNEARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTD 168
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
+ L L E + GGYFI+NG E+V +I ++ ++ + +D + YT +
Sbjct: 169 RDLCELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFAKKDSKYAYTGECR--S 223
Query: 151 CVRKD-QSSVTLKLYYLLNGSV---------RLGFWLQGKEYLLPVGIVLKALVDTNDLE 200
C+ + + T+ + L G R+ L + +P+ IV +AL +D +
Sbjct: 224 CLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRD 283
Query: 201 IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
I H+ +++ P + E VK L E + + L IG +
Sbjct: 284 ILEHIIYDFED-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGS--RGAKP 328
Query: 261 GLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
G+ E A+ V++ + H+ ++ K L +M+ +L D+ D
Sbjct: 329 GVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 388
Query: 317 QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
N+ + L G L+ + ++ L++ + Q I + GK F+ LA IK ++
Sbjct: 389 GNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFI-DRGKDFNL-ELA-IK-------TR 438
Query: 377 QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
I ++ L TG Q Q RAG + RL F +S R ++ G +
Sbjct: 439 IISDGLKYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRLNSPIGRDG-KLA 496
Query: 437 SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
R+L WG +CP TP+G GL+ ++ ++ + IL L
Sbjct: 497 KPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYIS-----------VGSQPSPILEFL 545
Query: 497 IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAAS 550
M +L ++ + + ++G VG+ + E+++ LR+L+ VS S
Sbjct: 546 EEWSM-ENLEEISPAAIADATKIFVNGCWVGI--HKDPEQLMNTLRKLRRQMDIIVSEVS 602
Query: 551 VIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEE------------SQNI 598
+I D E + G L K + R+I E S +
Sbjct: 603 MIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYKTTGWQDLVASGVV 662
Query: 599 ELIGPFEQ--VFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRN 656
E I E+ V + + D + TH EIHP+ +L V A++ P+ DHNQSPRN
Sbjct: 663 EYIDTLEEETVMLAMTPDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRN 722
Query: 657 MYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAV 716
YQ M KQ MG + R D + L PQ P+V T + E P G N+IVA+
Sbjct: 723 TYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAI 782
Query: 717 LAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDA---- 772
+YTGY+ ED++I+N+S+VDRG Y++ S G D+ + + ++
Sbjct: 783 ASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKG--FDQEEVFEKPTRETCQGM 840
Query: 773 -KSLHSVIDSDGLPYVGQMIHPGE----PYCSIYDKTTNSWRTNSR----------KGSE 817
+++ +D DGL G + + ++ + TN R + SE
Sbjct: 841 RHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRYTKRDCSTFLRTSE 900
Query: 818 SVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSG 877
+ VD V V + + IR R R P IGDKF+SRHGQKG C + DMPF+
Sbjct: 901 TGIVDQVMVTLNQEGY--KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFT- 957
Query: 878 VTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
G+ PD+IINPHA PSRMTI L+E + K
Sbjct: 958 CEGITPDIIINPHAIPSRMTIGHLIECLQGK 988
>gi|170042980|ref|XP_001849183.1| DNA-directed RNA polymerase II 140 kDa polypeptide [Culex
quinquefasciatus]
gi|167866385|gb|EDS29768.1| DNA-directed RNA polymerase II 140 kDa polypeptide [Culex
quinquefasciatus]
Length = 1176
Score = 239 bits (609), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 256/950 (26%), Positives = 412/950 (43%), Gaps = 144/950 (15%)
Query: 34 MFDHCRQAKISYTGKLMADV-EFQYLDAGSPV--VRERFNFGQFPVMLKTRRCHLQGADS 90
M + R ++Y+ L D+ + + ++ PV ++ G+ P+ML++ C L
Sbjct: 110 MPNEARLRNLTYSAPLYVDITKTKIVEGQDPVETQHQKTFIGKIPIMLRSTYCLLSQLTD 169
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
+ L L E + GGYFI+NG E+V +I ++ ++ S +D + Y K+ +
Sbjct: 170 RDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFSMKDGKYAY--KSEIRS 224
Query: 151 CVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
C+ + + TL + G + G+ + +P+ IV +AL D +
Sbjct: 225 CLEHSSRPTSTLWCNMMARGGQSIKKSAIGQRVIAILPYVKQEIPIMIVFRALGFVADRD 284
Query: 201 IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAE---VQDLSLTTRLQCLQHIGEHFQP 257
I H+ +D+ P + E VK L E VQ+ ++ L IG +
Sbjct: 285 ILEHIIYDFDD-----------PEMMEMVKPSLDEAFVVQEQNVA-----LNFIGA--RG 326
Query: 258 VIDGLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNP 313
G+ + A+ +++ + H+ ++ K L +M+ +L D+
Sbjct: 327 ARPGVTKDKRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDR 386
Query: 314 DSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKN 373
D N+ + L G L+ + ++ L++ + Q I + GK F+ LA IK
Sbjct: 387 DHYGNKRLDLAGPLLAFLFRGLFKNLLKEVRMYAQKFI-DRGKDFNL-ELA-IK------ 437
Query: 374 PSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGL 433
+K I + L TG Q Q RAG + RL F +S R V+ G
Sbjct: 438 -TKIITDGLRYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRVNSPIGRDG- 494
Query: 434 RTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSIL 493
+ R+L WG +CP TP+G GL+ ++ ++ + IL
Sbjct: 495 KLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYIS-----------VGSQPSPIL 543
Query: 494 RVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VS 547
L M +L ++ S + ++G VG+ + E+++A LR+L+ VS
Sbjct: 544 EFLEEWSM-ENLEEIAPSAIADATKIFVNGCWVGI--HRDPEQLMATLRKLRRQMDIIVS 600
Query: 548 AASVIPD--DLEVGYVPLSLGGAYPGLYLFTSPPKFVRPV------------RNISLPSE 593
S+I D D E+ ++T + RP+ ++ + E
Sbjct: 601 EVSMIRDIRDREI--------------RIYTDAGRICRPLLIVENGSLLLRKNHVDMLKE 646
Query: 594 ESQN------------IELIGPFEQ-VFMEIRCPDGGDGGRRNAFPAT--HEEIHPTGML 638
N +E I E+ M P + A+ T H EIHP +L
Sbjct: 647 RDYNNYGWQVLVASGVVEYIDTLEEETVMIAMTPYDLKQDKEYAYCTTYTHCEIHPAMIL 706
Query: 639 SVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTY 698
V A++ P+ DHNQSPRN YQ M KQ MG + R D + L P P+V T +
Sbjct: 707 GVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPMKPLVTTRSM 766
Query: 699 TKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDD-GN 757
E P G N+IVA+L YTGY+ ED++ILN S+V+RG Y++ S G+
Sbjct: 767 EYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDSESKKIGD 826
Query: 758 KVDRGQKLFRRNKDA--KSLHSVIDSDGL-----------PYVGQMIHPGEPYCSIYDKT 804
+ ++ +K R+ +L+ +D DG+ +G+ I E + D T
Sbjct: 827 QEEQFEKPNRQTCQGMRNALYDKLDDDGIIAPGLRVSGDDVVIGKTITLPETDDDL-DGT 885
Query: 805 TNSWRTNSRKG------SESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRH 858
T R + R G SE+ VD V + + NS+ + IR R R P IGDKF+SRH
Sbjct: 886 TK--RYSKRDGSTFLRNSETGIVDQVMLTL-NSEGY-KFCKIRVRSVRIPQIGDKFASRH 941
Query: 859 GQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
GQKG C + DMPF+ G+ PD+IINPHA PSRMTI L+E + K
Sbjct: 942 GQKGTCGIQYRQEDMPFT-CEGLTPDIIINPHAIPSRMTIGHLIECIQGK 990
>gi|68300857|gb|AAY89365.1| RNA polymerase IV second largest subunit precursor [Chlamydomonas
reinhardtii]
Length = 1607
Score = 239 bits (609), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 244/939 (25%), Positives = 400/939 (42%), Gaps = 129/939 (13%)
Query: 38 CRQAKISYTGKLMADV-EFQYLDAGSPVVRER-----FNFGQFPVMLKTRRCHLQGADS- 90
R ++Y L DV + +Y G V E+ + G+ P+MLK+ RC+L A +
Sbjct: 105 ARLRNLTYCAPLYVDVTKTEYTRVGENEVEEKTDLSHVHLGKVPIMLKSERCNLHEASTE 164
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKA---V 147
Q+ +L E + GGYF++NG E+V ++ ++ + V + + YT A
Sbjct: 165 QEATNLGECPYDQGGYFVINGSEKV----LIAQERMANNHVYVFKKSQPSKYTFCAEIRS 220
Query: 148 VIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---LPVGIVLKALVDTNDLEIFNH 204
V+ + SS+++ + + G Y+ P+ I+ +AL +D +I H
Sbjct: 221 VVEGSTRSASSMSIMMLAKGKKAGAAGVIRAQIPYIRAEFPIFILFRALGFVSDRDILEH 280
Query: 205 LTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQS 264
+ D P + E ++ + E Q++ T+ + L ++G+ + + G
Sbjct: 281 IVYDLD----------ADPAMLEALRSSVEEAQEVQ--TQEEALNYLGK--RGTVTGASK 326
Query: 265 ESYYAVAETVIRDYIFVHLNDN----NDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQE 320
A ++ + HL K + +M+ +L + D+ D N+
Sbjct: 327 ADRIQYARNLLIKELLPHLGTEEFMETRKGYFVGYMVHRLMLVALGRRPEDDRDHYANKR 386
Query: 321 ILLPGHLITIYLK---EKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQ 377
+ L G L+ + KL LR + + D GK+ + + N K
Sbjct: 387 LDLGGPLMAGLFRLLFRKLCKELRMQAQRMVDA----GKEINVISAIN---------DKV 433
Query: 378 IGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS 437
I ++ L TG Q + RAG + RL + +S R V+ G +
Sbjct: 434 ITRGLKYSLATGNWGEQGKQGI--RAGVSQVLARLTYASTLSHLRRVNSPIGREG-KLAK 490
Query: 438 VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLI 497
R+L WG CP TP+G+ GL+ +M C + S + + T
Sbjct: 491 PRQLHNSLWGIFCPAETPEGQAVGLVKNMALMCYITVGTPSLPVVAHLEEFNTE------ 544
Query: 498 GVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVI--PSSEIEKVVAHLRRLKVSAASVIPDD 555
+L ++ + A V ++G +G+ P++ I+ + A R++ S I D
Sbjct: 545 ------ALDEVTPADIAASTKVFINGVWLGIQRDPTALIKNLRAMRRQVAFSTEVAIIYD 598
Query: 556 LEVGYVPLSLGGAYPGLYLFTSPPKFVRPV----------------RNIS-LPSEESQN- 597
G L +FT + RP+ R IS LP E+
Sbjct: 599 -----------GPLKELRIFTDYGRASRPLYICEDNRLLVSKHHIRRLISPLPDEDEYAW 647
Query: 598 --------IELIGPFEQ----VFMEIR-CPDGGDGGRRNAFPATHEEIHPTGMLSVVANL 644
+E I E+ + M I + + G TH EIHP +L V A++
Sbjct: 648 PQLVQDGLVEYIDAEEEETTMIAMTIADLRNAREAGAATGTTYTHCEIHPAMILGVCASI 707
Query: 645 TPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGID 704
P+ DHNQSPRN YQ M KQ MG + R D + + L PQ P+V T
Sbjct: 708 IPFPDHNQSPRNTYQSAMGKQAMGMYATNYQTRMDTQGFVLYYPQKPLVCTRAMDYLMFR 767
Query: 705 EYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQK 764
E P G NAIVA++ Y+GY+ ED+++LN SS+DRG +Y+ + G+ +
Sbjct: 768 ELPAGINAIVAIMCYSGYNQEDSLMLNGSSIDRGFHRSILYRAYKEEEKKAGSMAREEIE 827
Query: 765 LFRRNKDAKSLHSV---IDSDGLPYVGQMIHPGEPYC----SIYDKTTNSWRTNSRK--- 814
+ +K H +D+DGL G + + C ++ D T + + ++K
Sbjct: 828 APDPSVTSKMKHGTYDKLDADGLCPPGTRVSGEDIICGKTVTLPDDPTGAVQRFTKKDAS 887
Query: 815 ----GSESVFVDYVAVDMKNSKNLPQK-ANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWP 869
G E+ +D V M + + QK IR R P +GDKF+SRHGQKG C +
Sbjct: 888 LALRGHEAGVIDQV---MLTTNDEGQKFVKIRVRTICIPQVGDKFASRHGQKGTCGITYT 944
Query: 870 DIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
DMPF+ G+ PD+I+NPHA PSRMTI L+E++ +K
Sbjct: 945 MEDMPFTA-EGIVPDIIVNPHAIPSRMTIGHLVEALMSK 982
>gi|15920466|ref|NP_376135.1| DNA-directed RNA polymerase subunit B [Sulfolobus tokodaii str. 7]
gi|15621249|dbj|BAB65244.1| DNA-directed RNA polymerase subunit B [Sulfolobus tokodaii str. 7]
Length = 1126
Score = 239 bits (609), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 254/991 (25%), Positives = 417/991 (42%), Gaps = 167/991 (16%)
Query: 9 FEPLRELVRHHIESFDYMLDEGLSEMFDH------------CRQAKISYTGKLMADV--- 53
F LR LVR H++SF+ L L ++ D + KI Y + +
Sbjct: 15 FFKLRGLVRQHLDSFNDFLRNKLQQIIDEQGEIITEIPGLKIKLGKIRYDRPGIRETDKG 74
Query: 54 ---EFQYLDA-----------------------GSPVVRERFNFGQFPVMLKTRRCHLQG 87
E L+A G P+ G P+MLK+
Sbjct: 75 PPKELTPLEARLRNLTYAVPLYLTMIPIENNIEGEPI---EVYIGDLPIMLKSIADPTSN 131
Query: 88 ADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAV 147
+L+ + E+ + GGYFI+NG E+V I+ +++ + V + T A
Sbjct: 132 MTYDELIKIGEDPKDPGGYFIVNGTEKV----IVAQEDLATNRVLVDYGKSGSNITHVAK 187
Query: 148 VIRCVRKDQSSVTLKLYYLLNGSVRLGFW-LQGKEYLLPVGIVLKALVDTNDLEIFNHLT 206
+ + V ++ L + S+++ F + GK +P I+++AL T D +I
Sbjct: 188 ITSAAAGYRVQVVIE--RLKDSSIQVSFATVPGK---IPFVIMMRALGFTTDKDIV--YA 240
Query: 207 CCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSES 266
D + + E ++ + Q S+TT L IG + G + E+
Sbjct: 241 VSLDPEIQNE--------------LLPSLEQASSITTVEDALDFIGNR---IAIGQKREN 283
Query: 267 YYAVAETVIRDYIFVHLN----DNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEIL 322
AE +I Y H+ D K L + KL L D+ D N+ +
Sbjct: 284 RIQRAEQIIDKYFLPHIGTSPEDRKKKGYYLAAAVNKLLELYLGRRQPDDKDHYANKRVR 343
Query: 323 LPGHLITIYLKEKLEDWLRKGKKLIQ--DEIENNGKKFDFFNLANIKKVMEKNPSKQIGT 380
L G L T + + ++ K L+ ++ + G++ L + E+
Sbjct: 344 LAGDLFTSLFRVAFKAFV---KDLVYQLEKAKVRGRRLSLTALVRADIITERV------- 393
Query: 381 SIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFA-GLRTTSVR 439
R A TG + R G + +R N+L +S R V +S A G R
Sbjct: 394 ---------RHALATGNWVGGRTGVSQLLDRTNWLSMLSHLRRVV--SSLARGQPNFEAR 442
Query: 440 KLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGV 499
L WG +CP TP+G GL+ ++ +V+ + +SI +V+
Sbjct: 443 DLHGTQWGRMCPFETPEGPNSGLVKNLALLAQVSVGINE-----------SSIEKVIYEQ 491
Query: 500 GMIPSLPKLVKSGPPAVLS-------VLLDGRVVGVIP-SSEIEKVVAHLRRLKVSAASV 551
G+I + + ++ V L+GR++G P E+ + + LRR +
Sbjct: 492 GVISQEELIDRLSAEEDINKYLNWSKVYLNGRLLGYYPDGKELAEKIRELRR-----SGK 546
Query: 552 IPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNI--SLPSEESQNIELIGPFEQVFM 609
I D++ V ++ +++ + RP+ + P +IE + E F
Sbjct: 547 ISDEVNVAHIVTEYINE---VHINCDGGRVRRPLIIVKDGKPLVSEDDIEKLRKGEITFD 603
Query: 610 E------IRCPDGGDGGRRNAFPA----------THEEIHPTGMLSVVANLTPYSDHNQS 653
+ I D + NA+ A TH EI P +L + A++ PY +HNQS
Sbjct: 604 DLVKQGKIEFLDAEE--EENAYIALNPQDLTKDHTHLEIWPPAILGITASIIPYPEHNQS 661
Query: 654 PRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAI 713
PRN YQ MAKQ +G + R D + + L PQ P+V T G ++ P G NAI
Sbjct: 662 PRNTYQSAMAKQALGLYAANYQLRTDTRAHLLHYPQKPLVGTKILDIIGYNDRPAGNNAI 721
Query: 714 VAVLAYTGYDMEDAMILNKSSVDRGMCHG---QIYQTETIDL----------SDDGNKVD 760
+AV++YTGY+MEDA+I+NKSSV+RGM ++Y TE + + G K
Sbjct: 722 LAVMSYTGYNMEDAIIMNKSSVERGMYRSTFFRLYSTEELKYPGGQEDKIMKPEPGTKGY 781
Query: 761 RGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPG---EPYCSIYDKTTNSWRTNSRKGSE 817
+G + +R +D + ++ G + + P + + + + + + + E
Sbjct: 782 KGNEYYRLLEDNGIVSPEVEVKGGDVLIGKVSPPRFLQEFKELSPEQSKRDTSIVTRHGE 841
Query: 818 SVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSG 877
VD V V + N + +R R R P IGDKF++RHGQKGV L DMP++
Sbjct: 842 MGIVDLVLVTESSEGN--KLVKVRVRDLRIPEIGDKFATRHGQKGVIGMLIDQADMPYT- 898
Query: 878 VTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
V G+ PD+I+NPHA PSRMTI ++E++A K
Sbjct: 899 VKGVVPDIILNPHALPSRMTIGQIMEALAGK 929
>gi|300123537|emb|CBK24809.2| unnamed protein product [Blastocystis hominis]
Length = 1056
Score = 239 bits (609), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 241/916 (26%), Positives = 397/916 (43%), Gaps = 105/916 (11%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR+ ++Y+ + AD+ + G ++R++ GQ P+ML + +C L+ +L +++
Sbjct: 45 CRKRSLTYSAPIFADIIYTL---GDKIIRKKVRIGQIPIMLHSCKCVLRNKSPAELAAMQ 101
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
E + GGYFI+ G E+V S +N + + D ++ V +
Sbjct: 102 ECLYDPGGYFIVKGNEKVLLSGEQMSKNRVLCDI-----------NDDGTIVVNVTSSTA 150
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
+ Y L +GK YL K V T D+ I C E ++
Sbjct: 151 ERKSRCYVLEK---------KGKLYL-------KHNVFTKDIPICIAFRCMGIESDQEIM 194
Query: 218 GAVGS-PLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAE---- 272
+G+ P + E +L + T+ Q L+ +G + G S A E
Sbjct: 195 ALIGNEPKYRTYFNQSIEEAHELGIFTQQQALKWVGS-LVSMRKGRWSRKRSAEEEGREV 253
Query: 273 --TVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLV-DHTSVSDNPDSLQNQEILLPGHLIT 329
T I ++ V D K L +M ++ + DH+ +SD D N+ I G L++
Sbjct: 254 FNTTILCHVPVVRYDFWPKCVYLAYMTRECLQCIFDHSLLSDK-DYYGNKRIETAGDLMS 312
Query: 330 IYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTG 389
+ ++ + + K K+ + ++ + N ++ VM++ + +
Sbjct: 313 LLFEDLFKMYNAKVKEFVNKSLQKTTR----VNAFDVVPVMQQFHDIITNGCVNAIKSGN 368
Query: 390 RLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFL 449
+ + +D R G RL+++ I + R + + R L P +G +
Sbjct: 369 WVLKRFHID---RKGVAEPVTRLSYIAAIGHMTRI-RSHVEKAQKISGPRALQPSQFGMV 424
Query: 450 CPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRV-LIGVGMIPSLPKL 508
CP TP+GE CGL+ +T + D + +R + ++ VG+ +
Sbjct: 425 CPSDTPEGEQCGLVKSLTILAYITIDQDEKA-------LRQVAYDLGVLDVGLFGAEELY 477
Query: 509 VKSGPPAVLSVLLDGRVVGV--IPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLG 566
+ PA L V L+G ++GV P + + V RR + A + D V LS
Sbjct: 478 AR---PASL-VFLNGGLLGVHSQPQALVRGVRQLRRRGLLGAFVSVYYDRIRRCVHLSCD 533
Query: 567 GAYPGLYLFTSPPKFVRP---------VRNISLPSEE---SQNIELIGPFEQVFMEIRCP 614
G L + RP +R ++ +E + IE I E+ I
Sbjct: 534 GGRICRPLLVLNRETGRPFLTKAHTDGIRRGTITIQELVRAGVIEYIDVNEENSCLIAVT 593
Query: 615 DGGDGGRRNAFPA-THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQA 673
D ++ PA TH EI P +L +VA+L PY DHNQSPRN YQC M KQ +G
Sbjct: 594 D------KDITPAHTHMEIDPVSILGIVASLIPYPDHNQSPRNTYQCAMGKQAIGTVACN 647
Query: 674 LKFRAD-QKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNK 732
+ R D L + P P+VR+ + P G NA+VAV++Y+GYD+EDA++LN+
Sbjct: 648 QQQRVDVSPLNVMVYPMMPMVRSRVLDLLHFSQLPAGQNAMVAVMSYSGYDIEDAVVLNR 707
Query: 733 SSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSL-----------HSVIDS 781
+S+DRG I + + L N K R +D K++ + + S
Sbjct: 708 ASIDRGYGRVVISKKQVFSLKKYPNGSSDLIKGPPRREDQKNIDDHTWNRLFEPYKALGS 767
Query: 782 DGLPYVGQMIHPGEPYCS--------IYDKTTNSWRTNSRKGSES-VFVDYVAVDMKNSK 832
DG+ G IHPG+ + + + R K ES +VD V + +++
Sbjct: 768 DGIVESGVPIHPGDIMVNKHVPMDTGSFGADRDQLRAAPVKYKESGGYVDKVLITTTDNE 827
Query: 833 NLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAF 892
K + R R P +GDKFSSRHGQKGV + ++PFS G+ PD+I+NPH F
Sbjct: 828 YFVIKTMV--RDMRRPELGDKFSSRHGQKGVVGLITGQENLPFS-TAGIYPDMIMNPHGF 884
Query: 893 PSRMTIAMLLESVAAK 908
PSRMT+ ++E +A K
Sbjct: 885 PSRMTVGKMMELLAGK 900
>gi|403224032|dbj|BAM42162.1| DNA-directed RNA polymerase [Theileria orientalis strain Shintoku]
Length = 1189
Score = 238 bits (608), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 234/904 (25%), Positives = 397/904 (43%), Gaps = 85/904 (9%)
Query: 39 RQAKISYTGKLMADVEFQ-YLDAGSPVVRE------RFNFGQFPVMLKTRRCHLQGADSQ 91
R ++Y ++ D+E Q +L+ +V+ R + P+MLK+ C +G
Sbjct: 150 RLRNLTYASQVYIDIEQQTFLNEEGNLVQTDSTVYPRVPLCRIPMMLKSAYCWTKGLTEH 209
Query: 92 KLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRC 151
L + E + GGYF++NG ERV L Q + F + + Y+ A +R
Sbjct: 210 DLSDIGECVFDQGGYFVVNGGERV-----LIAQERMANNFVYVFNKKNQKYSAVAQ-LRS 263
Query: 152 VRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---LPVGIVLKALVDTNDLEIFNHLTCC 208
VT +LN + L Y+ +PV I+ +AL +D +I +
Sbjct: 264 QPDFSQGVTSFSIMILNSQLAKNKMLAALPYVKGDVPVPILFRALGCISDRDILQRIVYD 323
Query: 209 YDEKYKKEKGAVGSPLVSERVKIILAEVQDLS-LTTRLQCLQHIGEHFQPVIDGLQSESY 267
+ + ++ + ++ + +++ S T++ QCL +IG+ V L++
Sbjct: 324 FSD--------------TQMLSLMRSTLEECSEYTSQEQCLDYIGKRGPTVGAPLEARIQ 369
Query: 268 YAVAETVIRDYIFVHLN----DNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILL 323
YA + ++R + H+ + K + +M+ +L D+ + + + L
Sbjct: 370 YA--KDLLRRHFLPHVGTEVGSESKKCFYVGYMIHRLLLNQLGRINEDDREHFGKKRLDL 427
Query: 324 PGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIE 383
G L+ + KKL+Q++I++ G+ FD IK QI ++
Sbjct: 428 AGALMASSFGALFRKLAKDVKKLLQNQIDS-GRSFDV--AGAIKSC------SQITQGLQ 478
Query: 384 TMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLP 443
L TG ++ R G + RL F ++S R ++ G + R+L
Sbjct: 479 YQLLTGNWGRDKEGNVV-RTGVSQVLNRLTFASYLSHLRRLNTPLGREG-KMAKPRQLHN 536
Query: 444 ESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIP 503
WG +CP TP+G+ GL+ ++ C ++ M ++IL L+ GM
Sbjct: 537 THWGMICPAETPEGQAVGLVKNLALMCYIS-----------VGSMTSTILDFLLEFGM-D 584
Query: 504 SLPKLVKSGPPAVLSVLLDGRVVGVI--PSSEIEKVVAHLRRLKVSAASVIPDDLEVGYV 561
SL ++ + + L+G +GV P + + ++ R+ +S+ + I D+ +
Sbjct: 585 SLDEISPVLIKDRVKIFLNGTWIGVFNQPDALVNLLLELRRKGNISSETSIVRDILSNEI 644
Query: 562 PL--SLGGAYPGLYLFTSPPKFVRPVRNISLPSE--------ESQNIELIG-PFEQVFME 610
+ G + LY+ + + + + + ES +E I E++ M
Sbjct: 645 KIFTDSGRSMRPLYIVENNRLLITKRHALMIENNQLNWSGLLESGVVEYIDCEEEEICMI 704
Query: 611 IRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFS 670
PD TH EIHP+ +L V A++ P+ D NQSPRN YQ M KQ MG
Sbjct: 705 AMFPDDLINNNNYCNSYTHCEIHPSMILGVCASIIPFPDQNQSPRNTYQSAMGKQAMGVY 764
Query: 671 VQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMIL 730
R D + L PQ P+V T + E P G N+IVA++ YTGY+ ED++I+
Sbjct: 765 STNYNLRMDTLSHVLYYPQKPLVCTRSMEFLRFRELPAGINSIVAIMCYTGYNQEDSLIM 824
Query: 731 NKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSL----HSVIDSDGLPY 786
N+SS+DRG+ +T + + G+ V + +L +S +D+DGL
Sbjct: 825 NQSSIDRGLFRSVFNRTYSSEEKYLGSTVIESFTKPTATSNFLNLKRGDYSKLDNDGLIE 884
Query: 787 VGQMIHPGEPYCSIYDKTTNSWRTNS--RKGSESVFVDYVAVDMKNSKNLPQKANIRFRH 844
G P P Y N S + +E+ VD V + + N + ++ R
Sbjct: 885 PGSRSDPNNPN---YPAEMNLRMDCSCCLRPNENGVVDNVLLTVNNKG--CKFTKVKVRS 939
Query: 845 TRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLES 904
R P IGDKF+SRHGQKG + D+PF+ G+ PD+I+NPHA PSRMTI L+E
Sbjct: 940 VRVPQIGDKFASRHGQKGTIGMTFRMEDLPFT-CEGIVPDIIMNPHAVPSRMTIGHLIEC 998
Query: 905 VAAK 908
+ K
Sbjct: 999 LLGK 1002
>gi|324120618|dbj|BAJ78700.1| RNA polymerase II second largest subunit [Aposthonia japonica]
Length = 1150
Score = 238 bits (608), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 248/947 (26%), Positives = 407/947 (42%), Gaps = 138/947 (14%)
Query: 34 MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVR---ERFNFGQFPVMLKTRRCHLQGADS 90
M + R ++Y+ L D+ + G + ++ G+ P+ML++ C L G
Sbjct: 84 MPNEARLRNLTYSAPLYVDITKTIVRDGEEPIETQHQKTFIGKIPIMLRSTYCLLNGLTD 143
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
+ L L E + GGYFI+NG E+V +I ++ ++ S +D + Y + IR
Sbjct: 144 RDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFSMKDGKYAYKTE---IR 197
Query: 151 CVRKDQSSVTLKLYYLLNGSVRLGFWLQ----GKEYL---------LPVGIVLKALVDTN 197
++ S T L+ +N R G ++ G+ + +P+ IV +AL
Sbjct: 198 SCQEHSSRPTSTLW--VNMMARGGQSIKKSAIGQRIIAILPYIRQEIPIMIVFRALGFVA 255
Query: 198 DLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQP 257
D +I H+ +D+ P + E VK L E + + L IG +
Sbjct: 256 DRDILEHIIYDFDD-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGA--RG 300
Query: 258 VIDGLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNP 313
G+ E A +++ + H+ ++ K L +M+ +L D+
Sbjct: 301 ARPGVTKEKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDR 360
Query: 314 DSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKN 373
D N+ + L G L+ + ++ L K ++ + + GK F+ LA IK
Sbjct: 361 DHYGNKRLDLAGPLLAFLFRGLFKN-LTKEVRMYAQKFIDRGKDFNL-ELA-IK------ 411
Query: 374 PSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGL 433
+K I + L TG Q Q RAG + RL F +S R V+ G
Sbjct: 412 -TKIITDGLRYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRVNSPIGRDG- 468
Query: 434 RTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSIL 493
+ R+L WG +CP TP+G GL+ ++ ++ IL
Sbjct: 469 KLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYIS-----------VGSQPAPIL 517
Query: 494 RVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VS 547
L M +L ++ S + ++G VG+ + E+++A LR+L+ VS
Sbjct: 518 EFLEEWSM-ENLEEIAPSAIADATKIFVNGCWVGI--HRDPEQLMATLRKLRRQMDIIVS 574
Query: 548 AASVIPD--DLEVGYVPLSLGGAYPGLYLFTSPPKFVRPV------------RNISLPSE 593
S+I D D E+ ++T + RP+ R++ + E
Sbjct: 575 EVSMIRDIRDREI--------------RIYTDAGRICRPLLIVENGSLLLKKRHVDMLKE 620
Query: 594 ESQN------------IELIGPFEQ-VFMEIRCPDGGDGGRRNAF--PATHEEIHPTGML 638
N +E I E+ M D + A+ TH EIHP +L
Sbjct: 621 REYNNYGWQVLVAQGVVEYIDTLEEETVMIAMSTDDLKQDKEFAYCNTYTHCEIHPAMIL 680
Query: 639 SVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTY 698
V A++ P+ DHNQSPRN YQ M KQ MG + R D + L P P+V T +
Sbjct: 681 GVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSM 740
Query: 699 TKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT-ETIDLSDDGN 757
E P G N++VA+L YTGY+ ED++I+N S+V+RG +++ + + G+
Sbjct: 741 EYLRFRELPAGINSVVAILCYTGYNQEDSVIMNASAVERGFFRSVFFRSYKDAESKRIGD 800
Query: 758 KVDRGQKLFRRNKDA--KSLHSVIDSDGL-----------PYVGQMIHPGEPYCSIYDKT 804
+ ++ +K R+ +L+ +D DG+ +G+ I + + T
Sbjct: 801 QEEQFEKPTRQTCQGMRNALYDKLDDDGIISPGIRVSGDDVVIGKTITLPDNEDELEGST 860
Query: 805 TNSWRTNSR---KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQK 861
+ ++ + SE+ VD V + + NS+ + IR R R P IGDKF+SRHGQK
Sbjct: 861 KRFTKRDASTFLRNSETGIVDQVMLTL-NSEGY-KFCKIRVRSVRIPQIGDKFASRHGQK 918
Query: 862 GVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
G C + DMPF+ G+ PD+IINPHA PSRMTI L+E + K
Sbjct: 919 GTCGIQYRQEDMPFT-CEGLTPDIIINPHAIPSRMTIGHLIECLQGK 964
>gi|170291136|ref|YP_001737952.1| DNA-directed RNA polymerase subunit B [Candidatus Korarchaeum
cryptofilum OPF8]
gi|170175216|gb|ACB08269.1| DNA-directed RNA polymerase subunit B [Candidatus Korarchaeum
cryptofilum OPF8]
Length = 1121
Score = 238 bits (608), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 237/995 (23%), Positives = 421/995 (42%), Gaps = 150/995 (15%)
Query: 1 MARKKSADFEPL-------RELVRHHIESFDYMLDEGLSEMFDHCRQAKISYTGKLM--- 50
++++ DF P+ R L IESF+ L+ G+ E+ D ++ ++ KL+
Sbjct: 2 LSKRSEVDFYPIVKAYFRERNLADVQIESFNRFLERGIQEVVDAFKEIELVENYKLILSR 61
Query: 51 ---------------------------------ADVEFQYLDAGSPVVRERFNFGQFPVM 77
++E + G + ER G P+M
Sbjct: 62 VYVGRPEIDEYDGSSLPAMPNEIRLRNADYIAPIELEIKVYAGGMELKTERVRIGHLPIM 121
Query: 78 LKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRD 137
+K++ C+L G D ++L+S E+ + GGYFI+NG ERV +++ P ++
Sbjct: 122 VKSKGCYLYGLDEKRLISKGEDPRDPGGYFIINGSERV---LVMRDDIAPNKVIVEQTVA 178
Query: 138 RREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTN 197
+ Y+ A ++ ++ + L+ YY+ +G+++ G +PV ++LKAL
Sbjct: 179 ENKPYSHVAQIVSARAGLRTRLYLE-YYMRDGTIKAS---TGALRGIPVAMLLKALGLER 234
Query: 198 DLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQP 257
D +I + ++ DE + ++ V R AE + + TR + L +IG
Sbjct: 235 DEDIVDAISSVDDEIRSEFLYSLDD--VQRR-----AEEEGAQIITREEALDYIGRRLVQ 287
Query: 258 VIDGLQSESYYAVAETVIRDYIFVHL----NDNNDKFNLLIFMLQKLFSLVDHTSVSDNP 313
+ Y A+ +R+ H+ DN K L M++KL +V D+
Sbjct: 288 AVPRADRIRY---AKEYLRNNFLPHIGVSEEDNIVKAYFLAKMIEKLLKVVRGKLEPDDK 344
Query: 314 DSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKN 373
D N+ + L G L+ ++ +RK K+ +++ + D + +K++ +
Sbjct: 345 DHFSNKRLRLSGTLMQEVFRDSFYQLVRKLKEKADEQLSSGVYDLDIRRIIQSQKLVTQR 404
Query: 374 PSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGL 433
+ + T G DL G + ER N++ + R V+ AGL
Sbjct: 405 IIRAVAT-----------GAWPGGDL----GVSQNLERTNYIATLHHLRRVNSPLP-AGL 448
Query: 434 RTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSIL 493
VR+ S G LCP+ TP+G GL+ + C V F I+
Sbjct: 449 PLHEVRQTHGTSIGRLCPLETPEGTNVGLVRSLAIFCDVT-----------FGTDPEPII 497
Query: 494 RVLIGVGMIP---SLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAAS 550
+++ G P + P+ V S P V ++GR+V + + E++V+ LR + A
Sbjct: 498 ELVLDWGAKPAKEAKPREVGSLTP----VYVNGRLVAF--TDKPEELVSFLREKR---AE 548
Query: 551 VIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNIS--------LPSEESQNIELIG 602
+ P EV ++ GA +++ + RP+ +S LP +S +
Sbjct: 549 LNP---EVNFIYNREEGA---VFINADAGRMRRPLIPVSKLKEAMELLPKVDSGELSFTD 602
Query: 603 PFEQVFMEIRCPDGGDGG------RRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRN 656
+ +E+ D + TH + P M V A+ PY++HN PR+
Sbjct: 603 LVKMGVVELLDADEEEYAVVAQSIEEITDKHTHFDFAPYAMFGVAASQIPYAEHNNIPRD 662
Query: 657 MYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAV 716
+ M +Q +G + + R D + + + PQ PIV T G + P+G N +VA+
Sbjct: 663 IIGSNMVRQGLGEYLANWRLRFDSRAFLMFYPQRPIVETRGAEITGYNYRPSGQNLVVAL 722
Query: 717 LAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSD----DGNKVDRGQKLFR-RNKD 771
L GY+M+DA++++K ++DRG ++T + +G+K + L + K
Sbjct: 723 LPMDGYNMDDALVMSKGAIDRGAARAVFFRTYETEARRHAIIEGDKFENPVALKKVSGKK 782
Query: 772 AKSLHSVIDSDGLPYVGQMIHPGE------------PYCSI---YDKTTNSWRTNS---R 813
+ + + DG+ + G+ P ++ Y + T R S R
Sbjct: 783 EEQYYQKLGEDGIVDPETYVEGGDVLIGKTSPPRFSPELTVGSGYPQYTFERRDTSISMR 842
Query: 814 KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDM 873
V D + + L + R TR P +GDKF++RHGQKGV ++ DM
Sbjct: 843 AWERGVVTDVLLATKTGGEKL---VRVNVRETRPPELGDKFATRHGQKGVLGMIYRHEDM 899
Query: 874 PFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
PF+ G+ PD++++PH PSRMTI L E +A K
Sbjct: 900 PFTA-QGIIPDIVLDPHTIPSRMTIGQLYEIIAGK 933
>gi|407464206|ref|YP_006775088.1| DNA-directed RNA polymerase subunit B [Candidatus Nitrosopumilus
sp. AR2]
gi|407047394|gb|AFS82146.1| DNA-directed RNA polymerase subunit B [Candidatus Nitrosopumilus
sp. AR2]
Length = 1115
Score = 238 bits (608), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 260/981 (26%), Positives = 411/981 (41%), Gaps = 161/981 (16%)
Query: 15 LVRHHIESFDYMLDEGLSEMFDHCRQAKI--------------------------SYTGK 48
+ R H+ SFD L+ GL + + Q I S T
Sbjct: 21 IARQHLNSFDEFLERGLQSIINEVGQIDIENAEYPYKIQLGKVKLQQPRMMELDGSITHI 80
Query: 49 LMADVEFQYLDAGSPVVRE------------RF-NFGQFPVMLKTRRCHLQGADSQKLVS 95
A+ + + +PV+ E RF + G PVM K+ C L SQKL+
Sbjct: 81 TPAEARLRNVSYSAPVMMEASVVEDGKILESRFVHIGDVPVMAKSNACILHNFSSQKLIE 140
Query: 96 LKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKD 155
E+ + GGYFI+NG ERV V L +Y +V RE V V
Sbjct: 141 HGEDPNDPGGYFIINGSERVI--VGLEDLSYNKIIVD------RETVGGNIVFKAKVYSS 192
Query: 156 QSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKK 215
KL ++ + + G +PV +++AL +D EI + ++ D
Sbjct: 193 IVGYRAKLELVMKNDGLIVARIPGSPVDIPVVTLMRALGLESDREIASVVSLVDD----- 247
Query: 216 EKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVI 275
+ + ++ + D+ T + +I + P G+ E AET++
Sbjct: 248 ---------IQDELEGSFEKAGDVP--TSKDAIVYISKRIAP---GMLEEFQIKRAETLL 293
Query: 276 RDYIFVHLN----DNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIY 331
+ HL + +K L KL L D+ D N+ I G ++
Sbjct: 294 DWGLLPHLGKHPENRKEKAQFLGEAACKLLELKLGWITPDDKDHYGNKVIKFAGQMLADL 353
Query: 332 LKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRL 391
+ + +R K ++E +G+K + +I + T +L
Sbjct: 354 FRTAFRNLVRDMKY----QLERSGQKRGI---------------NAVAAAIRPGIITDKL 394
Query: 392 --ATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT---SVRKLLPESW 446
A TG + R G T +R N+L IS R + S RT R L +
Sbjct: 395 NNAIATGNWGRGRVGVTQLLDRTNYLSTISHLRRIQSPLS----RTQPNFEARDLHATHF 450
Query: 447 GFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLP 506
G +CP TP+G CGL+ ++ + ++ + + + T V +
Sbjct: 451 GRICPSETPEGSNCGLVKNLALSGIISVNVPNEEIVEKLYDLGT--------VHFFDAKE 502
Query: 507 KLVKSGPPAVLSVLLDGRVVGVIP-SSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSL 565
L K G V +DGR++G SE+ + + LRR S I + V + +
Sbjct: 503 DLKKDG----TRVFVDGRLIGYYKDGSELAESLRELRR-----NSKIHPHVGVSFHKSEI 553
Query: 566 GGAYPGLYLFTSPPKFVRPVRNIS-----LPSEESQNIE----------LIGPFEQVFM- 609
G+ LY+ + + +RP+ I L SE I +G E +
Sbjct: 554 EGSTRRLYVNCNAGRVLRPLIIIKDNKPLLTSELLDKISKKLLSWTDLLRMGVLEMIDAN 613
Query: 610 -EIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMG 668
E C D ++A TH E+ P +L A++ PY +HNQSPRN Y+ MAKQ++G
Sbjct: 614 EEENCYVTLD--EKDAKKHTHLEVFPPAILGAGASIIPYPEHNQSPRNTYESAMAKQSLG 671
Query: 669 FSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAM 728
FS + + + + PQ PIV T G+++ P G N IVAVL + GY++EDA+
Sbjct: 672 FSTPMMNTSTYVRQHFMLYPQVPIVNTKAMKLLGLEDRPAGQNCIVAVLPFDGYNIEDAI 731
Query: 729 ILNKSSVDRGMCHG---QIYQTET------------IDLSDDGNKVDRGQKLFRRNKDAK 773
+L+K+SVDRG+ +IY E I ++D + +G++ +R +D
Sbjct: 732 VLSKASVDRGLGRTFFFRIYDAEAKQYPGGMRDSFEIPNAEDNIRGYKGERAYRLLEDDG 791
Query: 774 SLHSVIDSDGLP-YVGQMIHPG--EPYCSIYDKTTNSWRTNSRKG---SESVFVDYVAVD 827
+ S G +G+ P E Y +++ +R ++ G SE+ +D V +
Sbjct: 792 VVASEAPVKGGDILIGKTSPPRFMEEYREF--ESSGPYRRDTSIGVRPSETGVIDTVVMT 849
Query: 828 MKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLII 887
N K IR R R P IGDKF+SRHGQKGV L D+P++ +GM PD++I
Sbjct: 850 QSNEGGKMYK--IRARDMRIPEIGDKFASRHGQKGVLGILAKAEDLPYTA-SGMSPDVLI 906
Query: 888 NPHAFPSRMTIAMLLESVAAK 908
NPHAFPSRMT+ M++ES+ K
Sbjct: 907 NPHAFPSRMTVGMMMESICGK 927
>gi|256081823|ref|XP_002577167.1| DNA-directed RNA polymerase III subunit [Schistosoma mansoni]
gi|360043957|emb|CCD81503.1| putative dna-directed RNA polymerase III subunit [Schistosoma
mansoni]
Length = 1126
Score = 238 bits (608), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 246/930 (26%), Positives = 392/930 (42%), Gaps = 133/930 (14%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR ++Y G+++ DV F + V ++ G+ P+MLK+ C L G +L+ LK
Sbjct: 79 CRLRDLTYAGEILVDVTF--VRQNEVVSKKGVLIGRMPIMLKSSICVLNGKSPSELMRLK 136
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
E + GGYFI+ G E+V V++ +Q ++ D + G K ++
Sbjct: 137 ECPLDPGGYFIIGGTEKV---VLMQEQTSKNRLIIEE--DSKRGLVCSVTSSSAQTKSKT 191
Query: 158 SVTLK--LYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKK 215
++ K +YL + S + +P+ I+ KA+ T+D E+ +
Sbjct: 192 NIVTKDDKFYLSHNSFIVD---------VPIAILFKAMNITSDQELLQLI---------G 233
Query: 216 EKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHF-QPVIDGLQSESYYAVAETV 274
+ +V + V +K+ L + ++ T L + QP +
Sbjct: 234 TEESVWANFVPS-LKLCL----EYNIHTCLDACNWLHSRLRQPRYRTAFGADIILEIQRF 288
Query: 275 IRDYIFVHLNDNNDKFNLLIFMLQKLFS---LVDHTSVSDNP-DSLQNQEILLPGHLITI 330
+RD I H+ F F L ++ L + + N D N+ I L G L+ +
Sbjct: 289 LRDIIITHVEMEKLNFAPRAFFLGQMVRYLILANEKRIPVNDRDFYGNKRIELAGSLLAL 348
Query: 331 YLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGR 390
++ + + + L +I+ + F +IK M + +S ++K R
Sbjct: 349 LFEDVFKTF-NEDLWLTVSKIDTKRRCTPFDISRHIKTWMITEQLNRAISSGNWIIKRFR 407
Query: 391 LATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLLPESWGFL 449
+ R G T RL+++ + + F R S R + WG +
Sbjct: 408 M---------MRHGVTQVVSRLSYVAALGHM--TRMTSQFEKTRKVSGPRSIHASQWGLI 456
Query: 450 CPVHTPDGEPCG------LLNHMTSTCRVASYYDSRGNIRDFS--KMRTSILRVLIGVGM 501
CP TP+GE CG L+ H+T A + N F +MR + +I V
Sbjct: 457 CPSDTPEGEACGLVKNVALMCHVTVEVDDAHLIELISNYYTFPLYQMRYAKNEYVIYVNG 516
Query: 502 IPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYV 561
P + + P L VL+ G + S I V+ + V+ D
Sbjct: 517 KP----IGFTQHPGKLCVLIRG----LRRSGRIHGFVSVYIKQAYQCVHVVSD------- 561
Query: 562 PLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNI----ELI--GPFEQ--------- 606
GG + Y+ RP+ S+ + N+ +L+ G E
Sbjct: 562 ----GGRFCRPYIILCNG---RPLVTESVLQDLRHNVLNWDDLLKKGLVEYLDVNELNDC 614
Query: 607 -VFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQ 665
V M+ C G+ TH EI P +L VVA L PY DHNQSPRN YQC M KQ
Sbjct: 615 LVAMDESCLTDGNH-------YTHMEIDPATILGVVAGLIPYPDHNQSPRNTYQCAMGKQ 667
Query: 666 TMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDME 725
+G + R D + PQ P+V++ T DE P G NA+VA+++Y+GYD+E
Sbjct: 668 AIGTVALNQQIRFDTLQCQMVYPQKPLVQSKTIQMMHFDELPAGQNAVVAIMSYSGYDVE 727
Query: 726 DAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKV-DR--GQKLFRRNKDAKSLHSVIDSD 782
DA+++N++S+DRG +Y+ + L N V DR G + R + V+ +D
Sbjct: 728 DALVINQASIDRGFARACVYRRSGVHLKMHENAVYDRLMGPSIERETGVLRRGDEVLQAD 787
Query: 783 GLPYVGQMIH----------PGEPYCSIYDKTTN-SWRTNS-------------RKGSES 818
G+ Y+G ++ P ++ D + S N+ KG E
Sbjct: 788 GVAYIGACVNDRQILINKEMPVVSSSAVLDNAGSLSLNVNTPENATEFKRCPVDYKGIEP 847
Query: 819 VFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGV 878
+V+ V S+ I R TR P +GDKFSSRHGQKGV + D+PFS
Sbjct: 848 SYVEKVM--FSTSEGNQAVVKILLRQTRRPEVGDKFSSRHGQKGVVGLIVRQEDLPFS-T 904
Query: 879 TGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
G+ PD+I+NPH FPSRMT+ LLE + +K
Sbjct: 905 NGLTPDIIMNPHGFPSRMTVGKLLEVLGSK 934
>gi|194378878|dbj|BAG57990.1| unnamed protein product [Homo sapiens]
Length = 1099
Score = 238 bits (607), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 244/932 (26%), Positives = 400/932 (42%), Gaps = 109/932 (11%)
Query: 34 MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVR---ERFNFGQFPVMLKTRRCHLQGADS 90
M + R ++Y+ L D+ + G ++ ++ G+ P+ML++ C L G
Sbjct: 34 MPNEARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTD 93
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
+ L L E + GGYFI+NG E+V +I ++ ++ + +D + YT + R
Sbjct: 94 RDLCELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFAKKDSKYAYTGEC---R 147
Query: 151 CVRKDQS--SVTLKLYYLLNGSV---------RLGFWLQGKEYLLPVGIVLKALVDTNDL 199
++ S + T+ + L G R+ L + +P+ IV +AL +D
Sbjct: 148 SCLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDR 207
Query: 200 EIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVI 259
+I H+ +++ P + E VK L E + + L IG +
Sbjct: 208 DILEHIIYDFED-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGS--RGAK 252
Query: 260 DGLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDS 315
G+ E A+ V++ + H+ ++ K L +M+ +L D+ D
Sbjct: 253 PGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDH 312
Query: 316 LQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPS 375
N+ + L G L+ + ++ L++ + Q I + GK F+ LA IK +
Sbjct: 313 YGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFI-DRGKDFNL-ELA-IK-------T 362
Query: 376 KQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRT 435
+ I ++ L TG Q Q RAG + RL F +S R ++ G +
Sbjct: 363 RIISDGLKYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRLNSPIGRDG-KL 420
Query: 436 TSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRV 495
R+L WG +CP TP+G GL+ ++ ++ + IL
Sbjct: 421 AKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYIS-----------VGSQPSPILEF 469
Query: 496 LIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAA 549
L M +L ++ + + ++G VG+ + E+++ LR+L+ VS
Sbjct: 470 LEEWSM-ENLEEISPAAIADATKIFVNGCWVGI--HKDPEQLMNTLRKLRRQMDIIVSEV 526
Query: 550 SVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN------------ 597
S+I D E + G L K + R+I E N
Sbjct: 527 SMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGV 586
Query: 598 IELIGPFEQ--VFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPR 655
+E I E+ V + + D + TH EIHP+ +L V A++ P+ DHNQSPR
Sbjct: 587 VEYIDTLEEETVMLAMTPDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPR 646
Query: 656 NMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVA 715
N YQ M KQ MG + R D + L PQ P+V T + E P G N+IVA
Sbjct: 647 NTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVA 706
Query: 716 VLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDA--- 772
+ +YTGY+ ED++I+N+S+VDR Y++ S G D+ + + ++
Sbjct: 707 IASYTGYNQEDSVIMNRSAVDRSFFRSVFYRSYKEQESKKG--FDQEEVFEKPTRETCQG 764
Query: 773 --KSLHSVIDSDGLPYVGQMIHPGE----PYCSIYDKTTNSWRTNSR----------KGS 816
+++ +D DGL G + + ++ + TN R + S
Sbjct: 765 MRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRYTKRDCSTFLRTS 824
Query: 817 ESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFS 876
E+ VD V V + + IR R R P IGDKF+SRHGQKG C + DMPF+
Sbjct: 825 ETGIVDQVMVTLNQEGY--KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFT 882
Query: 877 GVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
G+ PD+IINPHA PSRMTI L+E + K
Sbjct: 883 -CEGITPDIIINPHAIPSRMTIGHLIECLQGK 913
>gi|108710089|gb|ABF97884.1| DNA-directed RNA polymerase II 135 kDa polypeptide, putative,
expressed [Oryza sativa Japonica Group]
gi|125545063|gb|EAY91202.1| hypothetical protein OsI_12811 [Oryza sativa Indica Group]
Length = 1222
Score = 238 bits (607), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 237/933 (25%), Positives = 397/933 (42%), Gaps = 116/933 (12%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPV--VRERFNF-----GQFPVMLKTRRCHLQGADS 90
R ++Y+ L DV ++ + G V E + G+ P+ML++ C L
Sbjct: 148 ARLRNLTYSAPLYVDVSYRVMKKGHDCEEVTETMEYPKVFIGKVPIMLRSSYCTLFQQSE 207
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
+ L L E + GGYFI+NG E+V ++ ++ + V F+ R+ +R
Sbjct: 208 KDLTELGECPYDQGGYFIINGSEKV----LIAQEKMSTNHV-YVFKKRQPNKYAYVAEVR 262
Query: 151 CVRKDQSSVTLKLYYLL------NGSVRLGFWLQGKEYL---LPVGIVLKALVDTNDLEI 201
+ ++Q+ ++ + G + Y+ +P+ IV +AL D +I
Sbjct: 263 SMAENQNRPASSMFVRMLSRAGAKGGSSGQYIRATLPYIRADIPIIIVFRALGFVADKDI 322
Query: 202 FNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDG 261
H+ CYD + E ++ L E + + L +IG+ V G
Sbjct: 323 LEHI--CYD---------FSDTQMMELLRPSLEEA--FVIQNQQVALDYIGKRGATV--G 367
Query: 262 LQSESYYAVAETVIRDYIFVHLN----DNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQ 317
+ E A+ +++ + H+ K +++ +L D+ D
Sbjct: 368 VTKEKRIKYAKEILQKEMLPHVGVGEFCETKKAYYFGYIIHRLLMCALGRRAEDDRDHYG 427
Query: 318 NQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQ 377
N+ + L G L+ + R + +Q + +NGK+ N++ ++ +K
Sbjct: 428 NKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCV-DNGKE------VNLQFAIK---AKT 477
Query: 378 IGTSIETMLKTGRL--ATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRT 435
I + ++ L TG A Q G RAG + RL + +S R ++ G +
Sbjct: 478 ITSGLKYSLATGNWGQANQAGT----RAGVSQVLNRLTYASTLSHLRRLNSPIGREG-KL 532
Query: 436 TSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRV 495
R+L WG +CP TP+G+ CGL+ ++ + IL
Sbjct: 533 AKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYIT-----------VGSAANPILEF 581
Query: 496 LIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK----VSAASV 551
L G + ++ + P + ++G VG+ + ++ +V LRRL+ V+
Sbjct: 582 LEEWG-TENFEEISPAVIPQAAKIFVNGCWVGIHRNPDL--LVKTLRRLRRQIDVNTEVG 638
Query: 552 IPDDLEVGYVPL--SLGGAYPGLYLFTS-----PPKFVRPVRNISLPSEESQN------I 598
+ D+ + + L G L++ + + +R ++ P E + I
Sbjct: 639 VVRDIRLKELRLYTDYGRCSRPLFIVENQRLLIKKRHIRALQQRETPEEGWHDLVAKGFI 698
Query: 599 ELIGPFEQ----VFMEIRCPDGGDGGRRNAFPAT--HEEIHPTGMLSVVANLTPYSDHNQ 652
E I E+ + M I G A+ T H EIHP+ +L V A++ P+ DHNQ
Sbjct: 699 EYIDTEEEETTMISMTINDLIGARHNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQ 758
Query: 653 SPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNA 712
SPRN YQ M KQ MG V + R D Y L PQ P+V T + P G NA
Sbjct: 759 SPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINA 818
Query: 713 IVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKD- 771
IVA+ Y+GY+ ED++I+N+SS+DRG +++ + G V ++ R N++
Sbjct: 819 IVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVK--EEFGRPNREN 876
Query: 772 ----AKSLHSVIDSDGLPYVGQMIH------------PGEPYCSIYDKTTNSWRTNSRKG 815
+ +D DGL G + P + + T + S +
Sbjct: 877 TMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTSPIPQDDAQGQATRYTKRDHSTSLRH 936
Query: 816 SESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPF 875
SES VD V + N+ L + +R R R P IGDKFSSRHGQKG + DMP+
Sbjct: 937 SESGMVDQVLL-TTNADGL-RFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPW 994
Query: 876 SGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
+ + G+ PD+I+NPHA PSRMTI L+E + K
Sbjct: 995 T-IEGITPDIIVNPHAIPSRMTIGQLIECIMGK 1026
>gi|379005506|ref|YP_005261178.1| DNA-directed RNA polymerase subunit B [Pyrobaculum oguniense TE7]
gi|375160959|gb|AFA40571.1| DNA-directed RNA polymerase subunit B [Pyrobaculum oguniense TE7]
Length = 1127
Score = 238 bits (607), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 247/901 (27%), Positives = 399/901 (44%), Gaps = 128/901 (14%)
Query: 57 YLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVF 116
Y+D P E F G+ P+M+K++RC+L + E+ + GGYFI+NG ER
Sbjct: 117 YVD-DEPYATETFYIGELPIMVKSKRCNLSRLRPSEYPKRFEDPQDFGGYFIINGSER-- 173
Query: 117 RSVILPKQNYPMSMVRSSFRDRREGYTDK--AVVIRCVRKDQSSVTLKLYYLLNGSVRLG 174
VI+ +++ + D+ + + K A I +S++T++L N +
Sbjct: 174 --VIISQEDL---VADRPIYDKGDKPSVKFLAKTISTGIGYRSTLTVEL----NKDGVIY 224
Query: 175 FWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILA 234
L +P I +KAL D ++ ++ D +KE + S +V+ ++ I
Sbjct: 225 ATLSAIPVKIPFPIYMKALGLETDEDVVKAVSD--DPDIQKE--LLPSLVVANQIAI--- 277
Query: 235 EVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDNND------ 288
TR L +IG V G A ++ Y HL
Sbjct: 278 --------TREDALDYIGGK---VAVGQPRPVRVERALQLLDRYFLPHLGTTVQDEKKQQ 326
Query: 289 -----KFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKG 343
K +L +++ L L D+ D + N+ + L G L+T + + L++
Sbjct: 327 EIRLKKALMLGQIVKGLVELQLGRRKPDDKDHVANKRVRLVGDLMTQLFRTVFKQLLQE- 385
Query: 344 KKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRA 403
++ ++E ++ I P Q + + + R A TG + +
Sbjct: 386 ---LRSQLEK------YYARGRI-------PHLQTIVRPDIITERVRQALATGNWVGGKT 429
Query: 404 GYTVQAERLNFLRFISFFRAVHRGASFAGLRTT---SVRKLLPESWGFLCPVHTPDGEPC 460
G + +R N+L +S+ R V S RT R L P WG LC V TP+G+
Sbjct: 430 GVSQILDRTNYLSTLSYLRRVVSSLS----RTQPHFEARDLHPTQWGRLCAVETPEGQNV 485
Query: 461 GLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVL 520
GL+ ++ + + D + ++L+ G++P L K + G V
Sbjct: 486 GLVKNLALLAEITTGVDE-----------NEVEQMLLQQGVVPIL-KAREEGIRGA-EVY 532
Query: 521 LDGRVVGVIPS-SEIEKVVAHLRRLKVSAASVIPDDLEVGYVPL-----SLGGAY--PGL 572
L+GR++G+ P E+ K V LRR I D++ + Y+ S GG P L
Sbjct: 533 LNGRLIGIHPEPEELVKTVRSLRR-----QGKISDEINIAYLNGVVYVNSDGGRIRRPLL 587
Query: 573 YLFTSPPKFVRPVRNISLPSEESQN-------IELIGPFEQVFMEIRCPDGGDGGRRNAF 625
+ K + + E + + +E + E+ I GD
Sbjct: 588 VVEDGKLKLTKDIVERVKRGELTWDDLLKMGVVEYLDADEEENAHIAVDPEGDLSN---- 643
Query: 626 PATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHL 685
TH EI P+ +L +A++ PY +HNQSPRN Y+ MAKQ++G ++ D + + L
Sbjct: 644 -YTHVEIIPSSILGAIASIIPYLEHNQSPRNQYEAAMAKQSLGLPQSNFLYKLDSRGHML 702
Query: 686 QTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIY 745
P+ PIV T G + P G NA+VA+L YTGY++EDA+ILNK+SV+RGM Y
Sbjct: 703 YYPERPIVTTRGLELVGYSKRPAGQNAVVALLTYTGYNIEDAVILNKASVERGMFRSVFY 762
Query: 746 QT-------------ETIDLSDDGNKVDRGQKLFRR-NKDAKSLHSVIDSDGLPYVGQMI 791
+T + I++ D K RG + + ++D + V S +G+
Sbjct: 763 RTYETEEQRYPGGEEDKIEIPDSSVKGYRGPEAYSHLDEDGIAPPEVYVSSSEVLIGKT- 821
Query: 792 HPGEPYCSIYDKTTNSWRTNS----RKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRN 847
P Y ++ + R ++ R+G + + VD V + N + +R R R
Sbjct: 822 SPPRFYTTLETERILKERRDASVAVRRGEKGI-VDRVIITESPEGN--KLVKVRLRELRI 878
Query: 848 PIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAA 907
P +GDKF+SRHGQKGV L DMPF+ G+ PD+I+NPHA PSRMT+A LLES+A
Sbjct: 879 PELGDKFASRHGQKGVVGMLLRQEDMPFTE-EGIVPDIIVNPHALPSRMTVAQLLESMAG 937
Query: 908 K 908
K
Sbjct: 938 K 938
>gi|222625458|gb|EEE59590.1| hypothetical protein OsJ_11898 [Oryza sativa Japonica Group]
Length = 1218
Score = 238 bits (606), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 237/933 (25%), Positives = 397/933 (42%), Gaps = 116/933 (12%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPV--VRERFNF-----GQFPVMLKTRRCHLQGADS 90
R ++Y+ L DV ++ + G V E + G+ P+ML++ C L
Sbjct: 144 ARLRNLTYSAPLYVDVSYRVMKKGHDCEEVTETMEYPKVFIGKVPIMLRSSYCTLFQQSE 203
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
+ L L E + GGYFI+NG E+V ++ ++ + V F+ R+ +R
Sbjct: 204 KDLTELGECPYDQGGYFIINGSEKV----LIAQEKMSTNHV-YVFKKRQPNKYAYVAEVR 258
Query: 151 CVRKDQSSVTLKLYYLL------NGSVRLGFWLQGKEYL---LPVGIVLKALVDTNDLEI 201
+ ++Q+ ++ + G + Y+ +P+ IV +AL D +I
Sbjct: 259 SMAENQNRPASSMFVRMLSRAGAKGGSSGQYIRATLPYIRADIPIIIVFRALGFVADKDI 318
Query: 202 FNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDG 261
H+ CYD + E ++ L E + + L +IG+ V G
Sbjct: 319 LEHI--CYD---------FSDTQMMELLRPSLEEA--FVIQNQQVALDYIGKRGATV--G 363
Query: 262 LQSESYYAVAETVIRDYIFVHLN----DNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQ 317
+ E A+ +++ + H+ K +++ +L D+ D
Sbjct: 364 VTKEKRIKYAKEILQKEMLPHVGVGEFCETKKAYYFGYIIHRLLMCALGRRAEDDRDHYG 423
Query: 318 NQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQ 377
N+ + L G L+ + R + +Q + +NGK+ N++ ++ +K
Sbjct: 424 NKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCV-DNGKE------VNLQFAIK---AKT 473
Query: 378 IGTSIETMLKTGRL--ATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRT 435
I + ++ L TG A Q G RAG + RL + +S R ++ G +
Sbjct: 474 ITSGLKYSLATGNWGQANQAG----TRAGVSQVLNRLTYASTLSHLRRLNSPIGREG-KL 528
Query: 436 TSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRV 495
R+L WG +CP TP+G+ CGL+ ++ + IL
Sbjct: 529 AKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYIT-----------VGSAANPILEF 577
Query: 496 LIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK----VSAASV 551
L G + ++ + P + ++G VG+ + ++ +V LRRL+ V+
Sbjct: 578 LEEWG-TENFEEISPAVIPQAAKIFVNGCWVGIHRNPDL--LVKTLRRLRRQIDVNTEVG 634
Query: 552 IPDDLEVGYVPL--SLGGAYPGLYLFTS-----PPKFVRPVRNISLPSEESQN------I 598
+ D+ + + L G L++ + + +R ++ P E + I
Sbjct: 635 VVRDIRLKELRLYTDYGRCSRPLFIVENQRLLIKKRHIRALQQRETPEEGWHDLVAKGFI 694
Query: 599 ELIGPFEQ----VFMEIRCPDGGDGGRRNAFPAT--HEEIHPTGMLSVVANLTPYSDHNQ 652
E I E+ + M I G A+ T H EIHP+ +L V A++ P+ DHNQ
Sbjct: 695 EYIDTEEEETTMISMTINDLIGARHNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQ 754
Query: 653 SPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNA 712
SPRN YQ M KQ MG V + R D Y L PQ P+V T + P G NA
Sbjct: 755 SPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINA 814
Query: 713 IVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKD- 771
IVA+ Y+GY+ ED++I+N+SS+DRG +++ + G V ++ R N++
Sbjct: 815 IVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVK--EEFGRPNREN 872
Query: 772 ----AKSLHSVIDSDGLPYVGQMIH------------PGEPYCSIYDKTTNSWRTNSRKG 815
+ +D DGL G + P + + T + S +
Sbjct: 873 TMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTSPIPQDDAQGQATRYTKRDHSTSLRH 932
Query: 816 SESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPF 875
SES VD V + N+ L + +R R R P IGDKFSSRHGQKG + DMP+
Sbjct: 933 SESGMVDQVLL-TTNADGL-RFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPW 990
Query: 876 SGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
+ + G+ PD+I+NPHA PSRMTI L+E + K
Sbjct: 991 T-IEGITPDIIVNPHAIPSRMTIGQLIECIMGK 1022
>gi|324120600|dbj|BAJ78691.1| RNA polymerase II second largest subunit [Petrobiellus takunagae]
Length = 1151
Score = 238 bits (606), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 243/930 (26%), Positives = 401/930 (43%), Gaps = 104/930 (11%)
Query: 34 MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVR---ERFNFGQFPVMLKTRRCHLQGADS 90
M + R ++Y+ L D+ + G + ++ G+ P+ML++ C L G
Sbjct: 84 MPNEARLRNLTYSAPLYVDITKTVVKDGEDPIETQHQKTFIGKIPIMLRSTYCLLNGLTD 143
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
+ L L E + GGYFI+NG E+V +I ++ ++ S +D + Y K+ +
Sbjct: 144 RDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFSMKDGKYAY--KSEIRS 198
Query: 151 CVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
C+ + + TL + L G + G++ + +P+ IV +AL D +
Sbjct: 199 CLEHSSRPTSTLWVNMLARGGQSVKKSSVGQKIIAILPYIKQEIPIMIVFRALGFVADRD 258
Query: 201 IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
I H+ +D+ P + E VK L E + + L IG +
Sbjct: 259 ILEHIIYDFDD-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGG--RGAKP 303
Query: 261 GLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
G+ E A +++ + H+ ++ K L +M+ +L D+ D
Sbjct: 304 GVTREKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 363
Query: 317 QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
N+ + L G L+ + ++ +++ + Q I + GK F+ LA IK +K
Sbjct: 364 GNKRLDLAGPLLAFLFRGMFKNLMKEVRMYAQKFI-DRGKDFN-LELA-IK-------TK 413
Query: 377 QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
I + L TG Q Q RAG + RL F +S R V+ G +
Sbjct: 414 IITDGLRYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRVNSPIGRDG-KLA 471
Query: 437 SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
R+L WG +CP TP+G GL+ ++ ++ + IL L
Sbjct: 472 KPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYIS-----------VGSQPSPILEFL 520
Query: 497 IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAAS 550
M +L ++ S + ++G VG+ + E++++ LR+L+ VS S
Sbjct: 521 EEWSM-ENLEEIAPSAIADATKIFVNGCWVGI--HRDPEQLMSTLRKLRRQMDIIVSEVS 577
Query: 551 VIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN------------I 598
+I D + + G L + + R++ + E N +
Sbjct: 578 MIRDIRDREIRIYTDAGRICRPLLIVENGRLLLKKRHVDMLKEREYNNYGWQDLVASSAV 637
Query: 599 ELIGPF-EQVFMEIRCPDGGDGGRRNAFPA--THEEIHPTGMLSVVANLTPYSDHNQSPR 655
E I E+ M D + A+ TH EIHP +L V A++ P+ DHNQSPR
Sbjct: 638 EYIDTLEEETVMIAMSLDDLRQDKEYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPR 697
Query: 656 NMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVA 715
N YQ M KQ MG + R D + L PQ P+V T + E P G N++VA
Sbjct: 698 NTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSVVA 757
Query: 716 VLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDD-GNKVDRGQKLFRRNKDA-- 772
+ YTGY+ ED++I+N S+V+RG + S G++ ++ +K R+
Sbjct: 758 IACYTGYNQEDSVIMNASAVERGFFRSVFMRAYKDSESKRVGDQEEQFEKPTRQTCQGMR 817
Query: 773 KSLHSVIDSDGL-----------PYVGQMIHPGEPYCSIYDKTTNSWRTNSR---KGSES 818
+++ +D DG+ +G+ I E + T + ++ + SE+
Sbjct: 818 NAIYDKLDDDGIIAPGIRVSGDDVIIGKTITLPENDDELEGTTKRYTKRDASTFLRNSET 877
Query: 819 VFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGV 878
VD V + + NS+ + IR R R P IGDKF+SRHGQKG C + DMPF+
Sbjct: 878 GIVDQVMLTL-NSEGY-KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFT-C 934
Query: 879 TGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
G+ PD+IINPHA PSRMTI L+E + K
Sbjct: 935 EGLTPDIIINPHAIPSRMTIGHLIECLQGK 964
>gi|17552304|ref|NP_498047.1| Protein RPB-2 [Caenorhabditis elegans]
gi|2507348|sp|Q10578.2|RPB2_CAEEL RecName: Full=DNA-directed RNA polymerase II subunit RPB2;
Short=RNA polymerase II subunit 2; Short=RNA polymerase
II subunit B2
gi|351058294|emb|CCD65728.1| Protein RPB-2 [Caenorhabditis elegans]
Length = 1193
Score = 238 bits (606), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 243/933 (26%), Positives = 393/933 (42%), Gaps = 112/933 (12%)
Query: 34 MFDHCRQAKISYTGKLMADVE--FQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQ 91
M + R ++Y L D+ D+ + V ++ G+ PVML++ C L +
Sbjct: 116 MPNEARLRNLTYASPLYVDITKVVTRDDSATEKVYDKVFVGKVPVMLRSSYCMLSNMTDR 175
Query: 92 KLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRC 151
L L E + GGYF++NG E+V +I ++ ++ S +D + Y K C
Sbjct: 176 DLTELNECPLDPGGYFVINGSEKV---LIAQEKMATNTVYVFSMKDGK--YAFKTECRSC 230
Query: 152 VRKD-QSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLEI 201
+ + + T+ + L G G+ + +P+ IV +AL +D +I
Sbjct: 231 LENSSRPTSTMWVNMLARGGGGGKKTAMGQRIIGILPYIKQEIPIMIVFRALGFVSDRDI 290
Query: 202 FNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDG 261
H+ YD P + E VK L E + + L IG + G
Sbjct: 291 LGHII--YD---------FNDPEMMEMVKPSLDEA--FVIQEQNVALNFIGA--RGAKPG 335
Query: 262 LQSESYYAVAETVIRDYIFVHL----NDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQ 317
+ E A +++ + H+ + K + +M+ +L D+ D +
Sbjct: 336 VTREQRIKYAREILQKELLPHVGVSEHCETKKAFFIGYMVHRLLLAALGRRELDDRDHIG 395
Query: 318 NQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQ 377
N+ + L G L+ + + L++ + Q I N D F L K +
Sbjct: 396 NKRLDLAGPLLAFLFRSLFRNLLKEMRMTAQKYINKN----DDFALDVCVK------TST 445
Query: 378 IGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS 437
I + L TG Q Q RAG + RL + +S R + G +
Sbjct: 446 ITRGLTYSLATGNWGDQKKAH-QSRAGVSQVLNRLTYTATLSHLRRANSPIGREG-KLAK 503
Query: 438 VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLI 497
R+L WG +CP TP+G+ GL+ ++ Y S G++ + IL L
Sbjct: 504 PRQLHNTQWGMVCPAETPEGQAVGLVKNLALMA-----YISVGSLPE------PILEFLE 552
Query: 498 GVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAASV 551
M +L ++ S + ++G VG+ E ++++ L++L+ VS S+
Sbjct: 553 EWSM-ENLEEVSPSAIADATKIFVNGAWVGI--HREPDQLMTTLKKLRRQMDIIVSEVSM 609
Query: 552 IPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN-------------- 597
+ D + + G L K R+I E +
Sbjct: 610 VRDIRDREIRIYTDAGRVCRPLLIVENQKLALKKRHIDQLKEAADEANKYTWSDLVGGGV 669
Query: 598 IELIGPFEQ--VFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPR 655
+ELI E+ + + D GG + TH EIHP +L V A++ P+ DHNQSPR
Sbjct: 670 VELIDSMEEETSMIAMMPEDLRSGGYCDTH--THCEIHPAMILGVCASIIPFPDHNQSPR 727
Query: 656 NMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVA 715
N YQ M KQ MG R D + L PQ P+V T + +E P G NAIVA
Sbjct: 728 NTYQSAMGKQAMGVYTTNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFNELPAGINAIVA 787
Query: 716 VLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAK-- 773
+L+Y+GY+ ED++I+N S++DRG+ Y++ ++ N + ++L + K
Sbjct: 788 ILSYSGYNQEDSVIMNNSAIDRGLFRSVFYRSYR---DNEANLDNANEELIEKPTREKCS 844
Query: 774 ----SLHSVIDSDGLPYVGQMIHPGEPYCS-------IYDKTTNSWRTNSR-------KG 815
SL+ +D DG+ G + + I D S + + +
Sbjct: 845 GMRHSLYDKLDEDGIISPGMRVSGDDVIIGKTVALPDIDDDLDASGKKYPKRDASTFLRS 904
Query: 816 SESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPF 875
SE+ VD V + + + N + IR R R P IGDKF+SRHGQKG ++ DMPF
Sbjct: 905 SETGIVDQVMLSLNSDGN--KFVKIRMRSVRLPQIGDKFASRHGQKGTMGIMYRQEDMPF 962
Query: 876 SGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
+ G+ PD+IINPHA PSRMTI L+E + K
Sbjct: 963 TA-EGLTPDIIINPHAVPSRMTIGHLIECLQGK 994
>gi|324120672|dbj|BAJ78727.1| RNA polymerase II second largest subunit [Lucidina biplagiata]
Length = 1175
Score = 238 bits (606), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 244/930 (26%), Positives = 396/930 (42%), Gaps = 104/930 (11%)
Query: 34 MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVR---ERFNFGQFPVMLKTRRCHLQGADS 90
M + R ++Y+ L D+ + G + ++ G+ P+ML++ C L G
Sbjct: 109 MPNEARLRNLTYSAPLYVDITKTIVKDGEEPIETQHQKTFIGKIPIMLRSTYCLLSGLTD 168
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
+ L+ L E + GGYFI+NG E+V L Q + F + Y K+ +
Sbjct: 169 RDLMELNECPLDPGGYFIINGSEKV-----LIAQEKMATNTVYVFAMKDGKYAFKSEIRS 223
Query: 151 CVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
C+ + + TL + + G + G+ + +PV +V +AL D +
Sbjct: 224 CLEHSSRPTSTLWVNMMARGGQAIKKAAIGQRIIAILPYIKQEIPVMVVFRALGFVADRD 283
Query: 201 IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
I H+ +++ P + E VK L E + + L IG +
Sbjct: 284 ILEHIIYDFED-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGA--RGARP 328
Query: 261 GLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
G+ E A +++ + H+ ++ K L +M+ +L D+ D
Sbjct: 329 GVTKEKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 388
Query: 317 QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
N+ + L G L+ + ++ +++ + Q I + GK F+ +LA IK +K
Sbjct: 389 GNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFI-DRGKDFN-LDLA-IK-------TK 438
Query: 377 QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
I + L TG Q Q RAG + RL F +S R V+ G +
Sbjct: 439 LITDGLRYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRVNSPIGRDG-KLA 496
Query: 437 SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
R+L WG +CP TP+G GL+ ++ ++ + IL L
Sbjct: 497 KPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYIS-----------VGSQPSPILEFL 545
Query: 497 IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAAS 550
M +L ++ S + ++G VG+ + E++++ LR+L+ VS S
Sbjct: 546 EEWSM-ENLEEIAPSAIADATKIFVNGCWVGI--HRDPEQLMSTLRKLRRQMDIIVSEVS 602
Query: 551 VIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN------------I 598
+I D + + G L + + R+I + E N +
Sbjct: 603 MIRDIRDREIRIYTDAGRICRPLLIVENGQLLLKKRHIDMLKEREYNNYGWQVLVAQGVV 662
Query: 599 ELIGPF-EQVFMEIRCPDGGDGGRRNAFPA--THEEIHPTGMLSVVANLTPYSDHNQSPR 655
E I E+ M PD + A+ TH EIHP +L V A++ P+ DHNQSPR
Sbjct: 663 EYIDTLEEETVMIAISPDDLRQEKDYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPR 722
Query: 656 NMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVA 715
N YQ M KQ MG + R D + L P P+V T + E P G N+IVA
Sbjct: 723 NTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVA 782
Query: 716 VLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT-ETIDLSDDGNKVDRGQKLFRRNKDA-- 772
+ YTGY+ ED++ILN S+V+RG Y++ + + G++ ++ +K R+
Sbjct: 783 IACYTGYNQEDSVILNASAVERGFFRSVFYRSYKDSECKRIGDQEEQFEKPTRQTCQGMR 842
Query: 773 KSLHSVIDSDGLPYVGQMIHPGEPYCSI----------YDKTTNSWRTNSR----KGSES 818
+L+ +D DG+ G + + D TT + + SE+
Sbjct: 843 NALYDKLDDDGIISPGIRVSGDDVVIGKTMTLPENDDELDGTTKKFSKRDASTFLRNSET 902
Query: 819 VFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGV 878
VD V + + NS+ + IR R R P IGDKF+SRHGQKG C + DM F+
Sbjct: 903 GVVDQVMLTL-NSEGY-KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMIFT-C 959
Query: 879 TGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
G+ PD+IINPHA PSRMTI L+E + K
Sbjct: 960 EGITPDIIINPHAIPSRMTIGHLIECIQGK 989
>gi|345561256|gb|EGX44352.1| hypothetical protein AOL_s00193g80 [Arthrobotrys oligospora ATCC
24927]
Length = 1258
Score = 237 bits (605), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 247/932 (26%), Positives = 389/932 (41%), Gaps = 142/932 (15%)
Query: 68 RFNFGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYP 127
R G+ P+MLK++ C L+ + L L E + GGYF++NG E+V L Q
Sbjct: 185 RVFIGKIPIMLKSQYCVLKEFNEDGLYGLNECPYDQGGYFVINGSEKV-----LIAQERS 239
Query: 128 MSMVRSSFRDRREGYTDKAVVIRCVRKDQS----SVTLKLYYLLNGSVRLGFWLQGKEYL 183
+ + F+ IR + S S+T+KL + G R GF + L
Sbjct: 240 AANIVQCFKKAAPSPISYIAEIRSALEKGSRLISSLTIKL--MAKGEGRTGFGRTIRSTL 297
Query: 184 ------LPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQ 237
+P+ +V +AL +D +I N + CYD + E +K + E
Sbjct: 298 PYIKTDVPIAVVFRALGVVSDEDILNRV--CYDRN---------DTAMLEMLKPCIEEA- 345
Query: 238 DLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLND----NNDKFNLL 293
+ R L IG+ + G+ + A+ +++ + H++ K L
Sbjct: 346 -FVIQDREVALDFIGK--RGSAQGINRDKRIKYAKEIMQKELLPHISQAEGHETRKAFFL 402
Query: 294 IFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIEN 353
+M+ K+ +D+ D + + L G L+ + + ++ K +Q +E+
Sbjct: 403 GYMVHKMLQCALERRETDDRDHFGRKRLDLAGPLLANLFRMLFKKLVKDVFKYLQKCVES 462
Query: 354 NGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLN 413
G+ F N+ ++ N I ++ L TG Q +AG + R
Sbjct: 463 -GRDF------NVTLAIKSN---TITNGLKYSLATGNWGDQKK-PASAKAGVSQVLNRYT 511
Query: 414 FLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMT--STCR 471
F +S R + G + R+L WG +CP TP+G+ CGL+ +++ S
Sbjct: 512 FASTLSHLRRTNTPIGRDG-KIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSYIT 570
Query: 472 VASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGV-IP 530
V S + I+ F + R + L P V V ++G VGV
Sbjct: 571 VGSPTEP---IQAFMEQRN-----------LEPLETFEPGRSPNVTKVFINGSWVGVHRD 616
Query: 531 SSEIEKVVAHLRRLKVSA--ASVIPDDLEVGYVPLSLGGAYPG-LYLFTSPPKFVRPVRN 587
++ + + V LRR V + SVI D + + S G LY+ + P +R
Sbjct: 617 AASLYRTVLSLRRTNVISHEVSVIRDIRDREFKIFSDAGRVTRPLYVIDNDPGSLRKGEL 676
Query: 588 I-------SLPSEESQNIELIGPFEQVF-------------------------------- 608
+ L + + Q E + P E+ +
Sbjct: 677 VLQKYHIEKLENAKFQTAEDLAPGEEKYGWNGLLNDGCVEYVDAEEEETIMISMSPEDLE 736
Query: 609 --------MEIRCPDGGDGGRR-------NAFPATHEEIHPTGMLSVVANLTPYSDHNQS 653
EI D GD +R A TH EIHP+ +L + A++ P+ DHNQS
Sbjct: 737 ISRQVQAGYEIPVDDSGDMAKRVKAKVNPYAHTWTHCEIHPSMILGICASIIPFPDHNQS 796
Query: 654 PRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAI 713
PRN YQ M KQ MG + R D L PQ P+ T + E P G NAI
Sbjct: 797 PRNTYQSAMGKQAMGIFLTNFNERMDTMANILYYPQKPLATTRSMEFLKFRELPAGQNAI 856
Query: 714 VAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDG-NKVDRGQKLFRRN--K 770
V ++ Y+GY+ ED++I+N+SS+DRG+ Y+ G ++ +K R N +
Sbjct: 857 VGIMCYSGYNQEDSVIMNQSSIDRGLFRSLFYRAYMDSEKRIGMTTIEEFEKPMRNNTLR 916
Query: 771 DAKSLHSVIDSDGL--PYV---GQMIHPGEPYCSIYDKTTNSWRTNSR---------KGS 816
+ +D DGL P V G+ I G+ D RT + + +
Sbjct: 917 LKHGTYDKLDDDGLVAPGVRVSGEDIIIGKTAPIPADTEELGQRTKNHTKRDVSTPLRST 976
Query: 817 ESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFS 876
E+ VD V + N++ + + +R R T+ P IGDKF+SRHGQKG + DMPF+
Sbjct: 977 ENGIVDQVML-TTNAEGM-RFVKVRMRTTKVPQIGDKFASRHGQKGTIGITYRHEDMPFT 1034
Query: 877 GVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
G+ PDLIINPHA PSRMTIA L+E +K
Sbjct: 1035 A-EGIVPDLIINPHAIPSRMTIAHLIECQLSK 1065
>gi|297527625|ref|YP_003669649.1| DNA-directed RNA polymerase subunit B [Staphylothermus hellenicus
DSM 12710]
gi|297256541|gb|ADI32750.1| DNA-directed RNA polymerase subunit B [Staphylothermus hellenicus
DSM 12710]
Length = 1156
Score = 237 bits (605), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 252/1007 (25%), Positives = 422/1007 (41%), Gaps = 180/1007 (17%)
Query: 15 LVRHHIESFDYMLDEGLSEMFDHCRQAKISYTGKLMADVEFQYLDAGSPVVR-------- 66
LVR H++S++ +D L E+ ++ KIS + KL+ Y P +R
Sbjct: 26 LVRQHLDSYNRFIDHLLPEIISEHKEIKISGSRKLLIK---GYRIGNEPKIRTIEGFERT 82
Query: 67 --------------------------------ERFNFGQFPVMLKTRRCHLQGADSQKLV 94
+ PVMLK++ L +++L+
Sbjct: 83 VTPLECRLRNFTYAVPVYLRVALQDETGIYKEQEIKLMDLPVMLKSKIDPLSKMTAEELI 142
Query: 95 SLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRK 154
++ E+ + GGYFI+NG E+V ++ +++ + + + T A VI +
Sbjct: 143 AIGEDPKDPGGYFIINGSEKV----LVAQEDLASNNILIDYASEGSSATHIAKVISVAKG 198
Query: 155 DQSSVTLK------LYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCC 208
+S + ++ Y L+G + +PV I++ AL ++LEI + ++
Sbjct: 199 RRSQLVIERRKDGIFYANLHG------------HRIPVVILMTALGLASELEITHAVSLD 246
Query: 209 YD-----------EKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQP 257
D + K + SE K I E + ++ L +IG
Sbjct: 247 PDLQTYLLPSIMQAQSIFPKLEIPENASSEEQKRIEEEHRRKTIEI---ALDYIGAR--- 300
Query: 258 VIDGLQSESYYAVAETVIRDYIFVHLNDN------NDKFNLLIFMLQKLFSLVDHTSVSD 311
+ G E A+ + +Y+ H+ K + M+ KL L+ D
Sbjct: 301 IAIGRPREERIRRAQRALDEYLLPHIGTEPTPEVRRKKAYFIGQMVNKLIELIVGRRKPD 360
Query: 312 NPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVME 371
+ D +N+ + L G L+ ++ L + + +K +E
Sbjct: 361 DKDHYRNKRLKLAGDLLAQLIRHNLVTYF----------------------IREVKSSIE 398
Query: 372 KNPSKQIGTSIETMLKTGRL------ATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVH 425
++ SK ++ ++K G L A TG + G + +R N + +S R V
Sbjct: 399 RSYSKYGKLDLKLVIKPGMLTDRILHAMATGNWPGGKTGVSQLLDRTNLMSTLSHLRRV- 457
Query: 426 RGASFAGLRTT----SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGN 481
+ L+ T R+L P WG +CP TP+G GL+ ++ V+
Sbjct: 458 ----VSPLKRTQPHFEARELHPTQWGRMCPFETPEGANIGLVKNLALMAHVS-------- 505
Query: 482 IRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLS----------VLLDGRVVGVIP- 530
+ + IL +GV I + VK L V L+GR++G P
Sbjct: 506 VGVPEEHIEPILYEKLGVKSIEEIIGEVKKAVTGELEEYPDYTSWSRVYLNGRLIGYYPD 565
Query: 531 SSEIEKVVAHLRR-----LKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPV 585
++ + + ++RR ++V+ A + + L Y+ G L + + ++P
Sbjct: 566 GKKLAEEIRNMRRRGKISIEVNVAHIQDEHLNEVYINTDAGRIRRPLLVVENGKLKLKPE 625
Query: 586 RNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFP------ATHEEIHPTGMLS 639
L S E + +L+ ++ +E D + P TH EI ++
Sbjct: 626 HIAKLKSGEWKFSDLV---KKGIIEYLDADEEEEAYIALTPDQITPEHTHMEIWTPAIMG 682
Query: 640 VVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYT 699
+ A++ PY++HNQSPRN Y+ MAKQ++G + R D + L PQ P+V+T
Sbjct: 683 ITASIIPYAEHNQSPRNSYEAAMAKQSLGLYSANFQRRMDTHGHLLHYPQKPLVQTRAME 742
Query: 700 KYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT-ETIDLSDDGNK 758
G +E P G N +VAV+++TGY++EDA+I+NKSSVDRG+ ++ T++ G +
Sbjct: 743 VNGYNERPAGQNMVVAVMSFTGYNIEDALIMNKSSVDRGLARSTFFRLYTTVEYRYPGGQ 802
Query: 759 VD------------RGQKLFRR-NKDAKSLHSVIDSDGLPYVGQMIHP----GEPYCSIY 801
D RG K + + ++D G +G++ P + Y
Sbjct: 803 EDKITIPPSNVRGYRGPKAYEKLDEDGIVSPETPVKGGDVLIGKISPPRFMTAQEYTVGA 862
Query: 802 DKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQK 861
T +R G + + VD V V N KA R R R P +GDKF+SRHGQK
Sbjct: 863 GITRQDASVVTRHGEKGI-VDLVMVTTDIDGNRLVKA--RVRDLRIPELGDKFASRHGQK 919
Query: 862 GVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
GV L P DMPF+ G+ PDLIINPHAFPSRMT+ L+ES+A K
Sbjct: 920 GVIGLLVPQQDMPFTE-EGIVPDLIINPHAFPSRMTVGQLIESIAGK 965
>gi|347970296|ref|XP_313416.4| AGAP003648-PA [Anopheles gambiae str. PEST]
gi|333468866|gb|EAA08858.4| AGAP003648-PA [Anopheles gambiae str. PEST]
Length = 1175
Score = 237 bits (605), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 255/948 (26%), Positives = 409/948 (43%), Gaps = 140/948 (14%)
Query: 34 MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVR---ERFNFGQFPVMLKTRRCHLQGADS 90
M + R ++Y+ L D+ L G V ++ G+ P+ML++ C L
Sbjct: 109 MPNEARLRNLTYSAPLYVDITKTKLVEGQDPVETQHQKTFIGKIPIMLRSTYCLLSQLTD 168
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
+ L L E + GGYFI+NG E+V +I ++ ++ S +D + Y K +
Sbjct: 169 RDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFSMKDGKYAY--KTEIRS 223
Query: 151 CVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
C+ + + TL + + G + G+ + +P+ IV +AL D +
Sbjct: 224 CLEHSSRPTSTLWVNMMARGGQSIKKSAIGQRVIAILPYVKQEIPIMIVFRALGFVADRD 283
Query: 201 IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAE---VQDLSLTTRLQCLQHIGEHFQP 257
I H+ +D+ P + E VK L E VQ+ ++ L IG +
Sbjct: 284 ILEHIIYDFDD-----------PEMMEMVKPSLDEAFVVQEQNVA-----LNFIGA--RG 325
Query: 258 VIDGLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNP 313
G+ + A+ +++ + H+ ++ K L +M+ +L D+
Sbjct: 326 ARPGVTKDKRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDR 385
Query: 314 DSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKN 373
D N+ + L G L+ + ++ +++ + Q I+ GK F+ LA IK
Sbjct: 386 DHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFIDR-GKDFNL-ELA-IK------ 436
Query: 374 PSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGL 433
+K I + L TG Q Q RAG + RL F +S R V+ G
Sbjct: 437 -TKIITDGLRYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRVNSPIGRDG- 493
Query: 434 RTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSIL 493
+ R+L WG +CP TP+G GL+ ++ ++ + IL
Sbjct: 494 KLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYIS-----------VGSQPSPIL 542
Query: 494 RVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VS 547
L M +L ++ S + ++G VG+ + E+++A LR+L+ VS
Sbjct: 543 EFLEEWSM-ENLEEIAPSAIADATKIFVNGCWVGI--HRDPEQLMATLRKLRRQMDIIVS 599
Query: 548 AASVIPD--DLEVGYVPLSLGGAYPGLYLFTSPPKFVRPV------------RNISLPSE 593
S+I D D E+ ++T + RP+ +I + +
Sbjct: 600 EVSMIRDIRDREI--------------RIYTDAGRICRPLLIVENGSLLLRKNHIDMLKD 645
Query: 594 ESQN------------IELIGPFEQ-VFMEIRCPDGGDGGRRNAFPAT--HEEIHPTGML 638
N +E I E+ M P + A+ T H EIHP +L
Sbjct: 646 RDYNNYGWQVLVASGVVEYIDTLEEETVMIAMTPYDLKQDKEYAYCTTYTHCEIHPAMIL 705
Query: 639 SVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTY 698
V A++ P+ DHNQSPRN YQ M KQ MG + R D + L P P+V T +
Sbjct: 706 GVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPMKPLVTTRSM 765
Query: 699 TKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDD-GN 757
E P G N+IVA+L YTGY+ ED++ILN S+V+RG Y++ S G+
Sbjct: 766 EYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDSESKRIGD 825
Query: 758 KVDRGQKLFRRNKDA--KSLHSVIDSDGL-----------PYVGQMIHPGEPYCSIYDKT 804
+ ++ +K R+ +L+ +D DG+ +G+ I E + D T
Sbjct: 826 QEEQFEKPNRQTCQGMRNALYDKLDEDGIIAPGLRVSGDDVVIGKTITLPETDDDL-DGT 884
Query: 805 TNSW--RTNSR--KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQ 860
T + R S + SE+ VD V + + NS+ + IR R R P IGDKF+SRHGQ
Sbjct: 885 TKRYTKRDGSTFLRNSETGIVDQVMLTL-NSEGY-KFCKIRVRSVRIPQIGDKFASRHGQ 942
Query: 861 KGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
KG C + DMPF+ G+ PD+IINPHA PSRMTI L+E + K
Sbjct: 943 KGTCGIQYRQEDMPFT-CEGITPDIIINPHAIPSRMTIGHLIECIQGK 989
>gi|324120598|dbj|BAJ78690.1| RNA polymerase II second largest subunit [Pedetontus unimaculatus]
Length = 1176
Score = 237 bits (605), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 243/930 (26%), Positives = 401/930 (43%), Gaps = 104/930 (11%)
Query: 34 MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVR---ERFNFGQFPVMLKTRRCHLQGADS 90
M + R ++Y+ L D+ + G + ++ G+ P+ML++ C L G
Sbjct: 109 MPNEARLRNLTYSAPLYVDITKTVVKDGEDPIETQHQKTFIGKIPIMLRSTYCLLNGLTD 168
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
+ L L E + GGYFI+NG E+V +I ++ ++ S +D + Y K+ +
Sbjct: 169 RDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFSMKDGKYAY--KSEIRS 223
Query: 151 CVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
C+ + + TL + L G + G++ + +P+ IV +AL D +
Sbjct: 224 CLEHSSRPTSTLWVNMLARGGQSVKKSSVGQKIIAILPYIKQEIPIMIVFRALGFVADRD 283
Query: 201 IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
I H+ +D+ P + E VK L E + + L IG +
Sbjct: 284 ILEHIIYDFDD-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGG--RGAKP 328
Query: 261 GLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
G+ E A +++ + H+ ++ K L +M+ +L D+ D
Sbjct: 329 GVTKEKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 388
Query: 317 QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
N+ + L G L+ + ++ +++ + Q I + GK F+ LA IK +K
Sbjct: 389 GNKRLDLAGPLLAFLFRGMFKNLMKEVRMYAQKFI-DRGKDFN-LELA-IK-------TK 438
Query: 377 QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
I + L TG Q Q RAG + RL F +S R V+ G +
Sbjct: 439 IITDGLRYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRVNSPIGRDG-KLA 496
Query: 437 SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
R+L WG +CP TP+G GL+ ++ ++ + IL L
Sbjct: 497 KPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYIS-----------VGSQPSPILEFL 545
Query: 497 IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAAS 550
M +L ++ S + ++G VG+ + E++++ LR+L+ VS S
Sbjct: 546 EEWSM-ENLEEIAPSAIADATKIFVNGCWVGI--HRDPEQLMSTLRKLRRQMDIIVSEVS 602
Query: 551 VIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN------------I 598
+I D + + G L + + R++ + E N +
Sbjct: 603 MIRDIRDREIRIYTDAGRICRPLLIVENGRLLLKKRHVDMLKEREYNNYGWQDLVASSAV 662
Query: 599 ELIGPF-EQVFMEIRCPDGGDGGRRNAFPA--THEEIHPTGMLSVVANLTPYSDHNQSPR 655
E I E+ M D + A+ TH EIHP +L V A++ P+ DHNQSPR
Sbjct: 663 EYIDTLEEETVMIAMSLDDLRQDKEYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPR 722
Query: 656 NMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVA 715
N YQ M KQ MG + R D + L PQ P+V T + E P G N++VA
Sbjct: 723 NTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSVVA 782
Query: 716 VLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDD-GNKVDRGQKLFRRNKDA-- 772
+ YTGY+ ED++I+N S+V+RG + S G++ ++ +K R+
Sbjct: 783 IACYTGYNQEDSVIMNASAVERGFFRSVFMRAYKDSESKRVGDQEEQFEKPTRQTCQGMR 842
Query: 773 KSLHSVIDSDGL-----------PYVGQMIHPGEPYCSIYDKTTNSWRTNSR---KGSES 818
+++ +D DG+ +G+ I E + T + ++ + SE+
Sbjct: 843 NAIYDKLDDDGIIAPGIRVSGDDVIIGKTITLPENDDELEGTTRRYTKRDASTFLRNSET 902
Query: 819 VFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGV 878
VD V + + NS+ + IR R R P IGDKF+SRHGQKG C + DMPF+
Sbjct: 903 GIVDQVMLTL-NSEGY-KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFT-C 959
Query: 879 TGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
G+ PD+IINPHA PSRMTI L+E + K
Sbjct: 960 EGLTPDIIINPHAIPSRMTIGHLIECLQGK 989
>gi|126465702|ref|YP_001040811.1| DNA-directed RNA polymerase subunit B [Staphylothermus marinus F1]
gi|126014525|gb|ABN69903.1| DNA-directed RNA polymerase, subunit B' / DNA-directed RNA
polymerase, subunit B' [Staphylothermus marinus F1]
Length = 1156
Score = 237 bits (605), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 241/948 (25%), Positives = 409/948 (43%), Gaps = 147/948 (15%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR +Y + V Q D + PVMLK++ L +++LV++
Sbjct: 88 CRLRNFTYAVPIYLKVALQ--DETGIYKEQEIKLMDLPVMLKSKIDPLSKMTAEELVAIG 145
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
E+ + GGYFI+NG E+V ++ +++ + + + T A VI + +S
Sbjct: 146 EDPKDPGGYFIINGSEKV----LVAQEDLASNNILVDYASEGSSATHIAKVISVAKGRRS 201
Query: 158 SVTLK------LYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDE 211
+ ++ Y L+G + +PV I++ AL ++LEI ++ D
Sbjct: 202 QLVIERRKDGIFYANLHG------------HRIPVVILMTALGLASELEITYAVSLDPDL 249
Query: 212 KYKKEKGAVGSPLVSERVKI-----------ILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
+ + + V R++I I E + ++ T L +IG +
Sbjct: 250 QTYLLPSIMQAQSVFPRLEIPENASPEEQKRIEEEHRRKTIET---ALDYIGAR---IAI 303
Query: 261 GLQSESYYAVAETVIRDYIFVHLNDN------NDKFNLLIFMLQKLFSLVDHTSVSDNPD 314
G E A+ + +Y+ H+ K + M+ KL L+ D+ D
Sbjct: 304 GRPREERIRRAQRALDEYLLPHIGTEPTPEVRRKKAYFIGQMVNKLIELIVDRRKPDDKD 363
Query: 315 SLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNP 374
+N+ + L G L+ ++ L + + +K +E++
Sbjct: 364 HYRNKRLKLAGDLLAQLVRHNLVTYF----------------------IREVKSSIERSY 401
Query: 375 SKQIGTSIETMLKTGRL------ATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGA 428
SK ++ ++K G L A TG + G + +R N + +S R V
Sbjct: 402 SKYGRLDLKLVIKPGMLTDRILHAMATGNWPGGKTGVSQLLDRTNLMSTLSHLRRV---- 457
Query: 429 SFAGLRTT----SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVAS---------- 474
+ L+ T R+L P WG +CP TP+G GL+ ++ V+
Sbjct: 458 -VSPLKRTQPHFEARELHPTQWGRMCPFETPEGANIGLVKNLALMAHVSVGVPEEHIEPI 516
Query: 475 YYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIP-SSE 533
Y G +++ ++ I + + G + P V L+GR++G P +
Sbjct: 517 LYRKLG-VKNLDEIIEEIKKAI--TGEVEEYPDYTSWS-----RVYLNGRLIGYHPDGKK 568
Query: 534 IEKVVAHLRR-----LKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNI 588
+ + + +LRR ++V+ A + + L Y+ G L + + ++P
Sbjct: 569 LAQEIRNLRRRGKISVEVNVAHIRDEHLNEVYINTDAGRIRRPLLVVENGKLKLKPEHIA 628
Query: 589 SLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFP------ATHEEIHPTGMLSVVA 642
L S E + +L+ ++ +E D + P TH EI ++ + A
Sbjct: 629 KLKSGEWKFSDLV---KRGIIEYLDADEEEEAYIALTPDQITPEHTHMEIWTPAIMGITA 685
Query: 643 NLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYG 702
++ PY++HNQSPRN Y+ MAKQ++G + R D + + L PQ P+V+T G
Sbjct: 686 SIIPYAEHNQSPRNSYEAAMAKQSLGLYSANFQQRMDTRGHLLHYPQKPLVQTRAMEVNG 745
Query: 703 IDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT-ETIDLSDDGNKVDR 761
+E P G N +VAV+++TGY++EDA+I+NKSSVDRG+ ++ T++ G + DR
Sbjct: 746 YNERPAGQNMVVAVMSFTGYNIEDALIMNKSSVDRGLARSTFFRLYTTVEYRYPGGQEDR 805
Query: 762 ------GQKLFRRNKDAKSLHSVIDSDGL-----------PYVGQMIHP----GEPYCSI 800
+ +R K + L D DG+ +G++ P + Y
Sbjct: 806 IMIPPSNVRGYRGPKAYEKL----DEDGIVSPETPVKGGDVLIGKISPPRFMTAQEYTVG 861
Query: 801 YDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQ 860
T +R G + + VD V V N + +R R R P +GDKF+SRHGQ
Sbjct: 862 AGITRQDASVVTRHGEKGI-VDVVMVTTDIDGN--RLVKVRVRDLRIPELGDKFASRHGQ 918
Query: 861 KGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
KGV L P DMPF+ G+ PDLIINPHAFPSRMT+ L+ES+A K
Sbjct: 919 KGVIGLLVPQQDMPFTE-EGIVPDLIINPHAFPSRMTVGQLIESIAGK 965
>gi|118576748|ref|YP_876491.1| DNA-directed RNA polymerase, beta subunit/140 kD subunit
[Cenarchaeum symbiosum A]
gi|118195269|gb|ABK78187.1| DNA-directed RNA polymerase, beta subunit/140 kD subunit
[Cenarchaeum symbiosum A]
Length = 1115
Score = 237 bits (605), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 263/988 (26%), Positives = 415/988 (42%), Gaps = 175/988 (17%)
Query: 15 LVRHHIESFDYMLDEGLSEMFDHCRQAKI------------------------------- 43
+ R H+ SFD L+ GL + D Q +I
Sbjct: 21 IARQHLNSFDEFLERGLQSIIDEQGQIEIENAEYPYKIQLGKVKLQKPRMMELDGSITYI 80
Query: 44 ----------SYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKL 93
SY+ +M +E ++ G + + + G P M+K+ C L QKL
Sbjct: 81 TPAEGRLRNVSYSAPVM--MEASVVEDGKTLESKFVHIGDIPTMIKSSACVLHNLPDQKL 138
Query: 94 VSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVR 153
+ E+ + GGYFI+NG ERV V L +Y +V +E V V
Sbjct: 139 IEQGEDPNDPGGYFIINGSERVV--VGLEDLSYNKIIVD------KETVGGNPVYKAKVY 190
Query: 154 KDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKY 213
KL ++ + + G +PV ++KAL +D EI + + D +
Sbjct: 191 SSIVGYRAKLELIMKNDGLIVVRIPGSPVDIPVVTLMKALGLESDREIASSASLNDDIQN 250
Query: 214 KKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAET 273
+ E GS + VK T + +I + P G+ E AET
Sbjct: 251 ELE----GSFEKAGEVK------------TSKDAIVYISKRIAP---GMLEEFQIKRAET 291
Query: 274 VIRDYIFVHLN----DNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
++ + HL + +K L KL L +D+ D N+ I G ++
Sbjct: 292 LLDWSLLPHLGKHPENRKEKAQFLGEATCKLLELKLVWIPADDKDHYGNKVIKFAGQMLA 351
Query: 330 IYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTG 389
+ + +R K ++E +G+K +A +I + T
Sbjct: 352 DLFRTAFRNLVRDMKY----QLERSGQKRGIHAVA---------------AAIRPGIVTD 392
Query: 390 RL--ATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT---SVRKLLPE 444
+L A TG + R G T +R N+L IS R V S RT R L
Sbjct: 393 KLNNAIATGNWGRGRVGVTQLLDRTNYLSTISHLRRVQSPLS----RTQPNFEARDLHAT 448
Query: 445 SWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPS 504
+G +CP TP+G CGL+ ++ + ++ + S+ I L +G +
Sbjct: 449 HFGRICPSETPEGSNCGLVKNLALSAIISVHVPSQ-----------EITEKLFDMGTV-H 496
Query: 505 LPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLS 564
+ + +DGR++G + LR L+ S S I + + + +
Sbjct: 497 FTDAKEDARATGTRIFVDGRLIGYYKDGG--GLADSLRDLRRS--SKIHPHVSISFNRPA 552
Query: 565 LGGAYPGLYLFTSPPKFVRPVRNIS----LPSEE----------SQN-------IELIGP 603
GA LY+ S + +RP+ I L +++ S N IELI
Sbjct: 553 EDGATRRLYVNCSAGRVLRPMIIIKDGKPLLTQDLLDKISSKLLSWNDLLRMGVIELIDA 612
Query: 604 FEQVFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMA 663
E+ + + + A TH EI P+ +L A++ PY +HNQSPRN Y+ MA
Sbjct: 613 NEEENCYVTLDE------KEAKGHTHLEIFPSAILGAGASIIPYPEHNQSPRNTYESAMA 666
Query: 664 KQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYD 723
KQ++GFS + + + + PQTPIV T G+++ P G N +VAVL + GY+
Sbjct: 667 KQSLGFSTPMMNTSTYVRQHFMLYPQTPIVNTRAMGLLGLEDRPAGQNCVVAVLPFDGYN 726
Query: 724 MEDAMILNKSSVDRGMCHG---QIYQTET------------IDLSDDGNKVDRGQKLFRR 768
+EDA++L+KSSVDRG+ +IY E I ++D + +G+K +R
Sbjct: 727 IEDAIVLSKSSVDRGLARTFFYRIYDAEAKQYPGGMRDNFEIPGAEDNIRGYKGEKSYRL 786
Query: 769 NKD---AKSLHSVIDSDGLPYVGQMIHPG--EPYCSIYDKTTNSWRTNSRKG---SESVF 820
+D S +V+ D L +G+ P E Y + + +R ++ G SE+
Sbjct: 787 LEDDGVIASESTVLGGDIL--IGKTSPPRFMEEYKEF--EPSGPYRRDTSIGVRPSETGV 842
Query: 821 VDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTG 880
VD V + N K IR R R P IGDKF++RHGQKGV L + D+P++ G
Sbjct: 843 VDTVVMTQSNEGGKMYK--IRVRDMRVPEIGDKFAARHGQKGVLGILAKNEDLPYT-AEG 899
Query: 881 MRPDLIINPHAFPSRMTIAMLLESVAAK 908
+ PD++INPHAFPSRMT+ M +ES+ K
Sbjct: 900 VTPDVLINPHAFPSRMTVGMFMESITGK 927
>gi|357621065|gb|EHJ73034.1| hypothetical protein KGM_12615 [Danaus plexippus]
Length = 1176
Score = 237 bits (605), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 250/944 (26%), Positives = 397/944 (42%), Gaps = 132/944 (13%)
Query: 34 MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFN---FGQFPVMLKTRRCHLQGADS 90
M + R ++Y+ L D+ + + + G+ P+ML++ C L
Sbjct: 109 MPNEARLRNLTYSAPLYVDITKTIVKENEDPIETQHQKTFIGKIPIMLRSTYCLLSNLTD 168
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
+ L L E + GGYFI+NG E+V L Q + F + Y K +
Sbjct: 169 RDLTELNECPLDPGGYFIINGSEKV-----LIAQEKMATNTVYVFSMQGGKYAYKTEIRS 223
Query: 151 CVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
C+ + + TL + + G + G+ + +P+ IV +AL D +
Sbjct: 224 CLEHSSRPTSTLWVNMMARGGQSIKKSAIGQRIVAIVPYIKQEIPIMIVFRALGFVADRD 283
Query: 201 IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
I H+ +D+ P + E VK L E + + L IG +
Sbjct: 284 ILEHIIYDFDD-----------PEMMEMVKPSLDEA--FVIQEQNVALSFIGA--RGARP 328
Query: 261 GLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
G+ E A +++ + H+ ++ K L +M+ +L D+ D
Sbjct: 329 GVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 388
Query: 317 QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
N+ + L G L+ + ++ L++ + Q I + GK F+ LA IK +K
Sbjct: 389 GNKRLDLAGPLLAFLFRGLFKNLLKEVRMYAQKFI-DKGKDFNL-ELA-IK-------TK 438
Query: 377 QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
I + L TG Q Q RAG + RL F +S R V+ G +
Sbjct: 439 IITDGLRYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRVNSPIGRDG-KLA 496
Query: 437 SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
R+L WG +CP TP+G GL+ ++ ++ + IL L
Sbjct: 497 KPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYIS-----------VGSQPSPILEFL 545
Query: 497 IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAAS 550
M +L ++ S + ++G VG+ + E+++A LR+L+ VS S
Sbjct: 546 EEWSM-ENLEEIAPSAIADATKIFVNGCWVGI--HRDPEQLMATLRKLRRQMDIIVSEVS 602
Query: 551 VIPD--DLEVGYVPLSLGGAYPGLYLFTSPPKFVRPV------------RNISLPSEESQ 596
+I D D E+ ++T + RP+ ++I E
Sbjct: 603 MIRDIRDREI--------------RIYTDAGRICRPLLIVENGSLLLKKKHIDQLKERDY 648
Query: 597 N------------IELIGPFEQ-VFMEIRCPDGGDGGRRNAFPAT--HEEIHPTGMLSVV 641
N +E I E+ M PD + A+ T H EIHP +L V
Sbjct: 649 NNYGWQNLVASGVVEYIDTLEEETVMIAMNPDDLQQIKEYAYCTTYTHCEIHPAMILGVC 708
Query: 642 ANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKY 701
A++ P+ DHNQSPRN YQ M KQ MG + R D + L P P+V T +
Sbjct: 709 ASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLFYPHKPLVTTRSMEYL 768
Query: 702 GIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDD-GNKVD 760
E P G N+IVA+L YTGY+ ED++ILN S+V+RG Y++ S G++ +
Sbjct: 769 RFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDSESKRIGDQEE 828
Query: 761 RGQKLFRRNKDA--KSLHSVIDSDGL-----------PYVGQMIHPGEPYCSIYDKTTNS 807
+ +K R+ +L+ +D DG+ +G+ I E + T
Sbjct: 829 QFEKPTRQTCQGMRNALYDKLDDDGIIAPGIRVSGDDVVIGKTITLPENDDELEGTTKRF 888
Query: 808 WRTNSR---KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVC 864
+ ++ + SE+ VD V + + NS+ + IR R R P IGDKF+SRHGQKG C
Sbjct: 889 TKRDASTFLRNSETGIVDQVMLTL-NSEGY-KFCKIRVRSVRIPQIGDKFASRHGQKGTC 946
Query: 865 SQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
+ DMPF+ G+ PD+IINPHA PSRMTI L+E + K
Sbjct: 947 GIQYRQEDMPFT-CEGITPDIIINPHAIPSRMTIGHLIECIQGK 989
>gi|145592515|ref|YP_001154517.1| DNA-directed RNA polymerase subunit B [Pyrobaculum arsenaticum DSM
13514]
gi|145284283|gb|ABP51865.1| DNA-directed RNA polymerase, subunit B' / DNA-directed RNA
polymerase, subunit B' [Pyrobaculum arsenaticum DSM
13514]
Length = 1127
Score = 237 bits (604), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 249/901 (27%), Positives = 399/901 (44%), Gaps = 128/901 (14%)
Query: 57 YLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVF 116
Y+D P E F G+ P+M+K++RC+L + E+ + GGYFI+NG ER
Sbjct: 117 YVD-DEPYATETFYIGELPIMVKSKRCNLTRLRPSEYPKRFEDPQDFGGYFIINGSER-- 173
Query: 117 RSVILPKQNYPMSMVRSSFRDRREGYTDK--AVVIRCVRKDQSSVTLKLYYLLNGSVRLG 174
VI+ +++ + D+ + + K A I +S++T++L N +
Sbjct: 174 --VIISQEDL---VADRPIYDKGDKPSVKFLAKTISTGIGYRSTLTVEL----NKDGVIY 224
Query: 175 FWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILA 234
L +P I +KAL D ++ ++ D +KE + S +V+ ++ I
Sbjct: 225 ATLSAIPVKIPFPIYMKALGLETDEDVVKAVSD--DPDIQKE--LLPSLVVANQIAI--- 277
Query: 235 EVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDNN------- 287
TR L +IG V G A ++ Y HL
Sbjct: 278 --------TREDALDYIGGK---VAVGQPRPVRVERALQLLDRYFLPHLGTTVPDEKKQQ 326
Query: 288 ----DKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKG 343
K +L +++ L L D+ D + N+ + L G L+T + + L++
Sbjct: 327 EIRLKKALMLGQIVKGLVELQLGRRKPDDKDHVANKRVRLVGDLMTQLFRTVFKQLLQE- 385
Query: 344 KKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRA 403
++ ++E ++ I P Q + + + R A TG + +
Sbjct: 386 ---LRSQLEK------YYARGRI-------PHLQTIVRPDIITERVRQALATGNWVGGKT 429
Query: 404 GYTVQAERLNFLRFISFFRAVHRGASFAGLRTT---SVRKLLPESWGFLCPVHTPDGEPC 460
G + +R N+L +S+ R V S RT R L P WG LC V TP+G+
Sbjct: 430 GVSQILDRTNYLSTLSYLRRVVSSLS----RTQPHFEARDLHPTQWGRLCAVETPEGQNV 485
Query: 461 GLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVL 520
GL+ ++ + + D D +M L+ G++P L K + G V
Sbjct: 486 GLVKNLALLAEITTGVDEN----DVEQM-------LLQQGVVPIL-KAREEGVRGA-EVY 532
Query: 521 LDGRVVGVIPS-SEIEKVVAHLRRLKVSAASVIPDDLEVGYVPL-----SLGGAY--PGL 572
L+GR++G+ P E+ K V LRR I D++ + Y+ S GG P L
Sbjct: 533 LNGRLIGIHPEPEELVKTVRSLRR-----QGKISDEINIAYLNGVVYVNSDGGRIRRPLL 587
Query: 573 YLFTSPPKFVRPVRNISLPSEESQN-------IELIGPFEQVFMEIRCPDGGDGGRRNAF 625
+ K + + E + + +E + E+ I GD
Sbjct: 588 VVEDGKLKLTKDIVERVKRGELTWDDLLKMGVVEYLDADEEENAHIAVDPEGDLSN---- 643
Query: 626 PATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHL 685
TH EI P+ +L +A++ P+ +HNQSPRN Y+ MAKQ++G ++ D + + L
Sbjct: 644 -YTHVEIIPSSILGAIASIIPFLEHNQSPRNQYEAAMAKQSLGLPQSNFLYKLDSRGHML 702
Query: 686 QTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIY 745
P+ PIV T G + P G NA+VA+L YTGY++EDA+ILNK+SV+RGM Y
Sbjct: 703 YYPERPIVTTRGLELVGYSKRPAGQNAVVALLTYTGYNIEDAVILNKASVERGMFRSVFY 762
Query: 746 QT-------------ETIDLSDDGNKVDRGQKLFRR-NKDAKSLHSVIDSDGLPYVGQMI 791
+T + I++ D K RG + + ++D + V S +G+
Sbjct: 763 RTYETEEQRYPGGEEDKIEIPDSSVKGYRGPEAYSHLDEDGIAPPEVYVSSSEVLIGKT- 821
Query: 792 HPGEPYCSIYDKTTNSWRTNS----RKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRN 847
P Y ++ + R ++ R+G + + VD V V N + +R R R
Sbjct: 822 SPPRFYTTLETERILKERRDASVAVRRGEKGI-VDRVIVTESPEGN--KLVKVRLRELRI 878
Query: 848 PIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAA 907
P +GDKF+SRHGQKGV L DMPF+ G+ PD+I+NPHA PSRMT+A LLES+A
Sbjct: 879 PELGDKFASRHGQKGVVGMLLRQEDMPFTE-EGIVPDIIVNPHALPSRMTVAQLLESMAG 937
Query: 908 K 908
K
Sbjct: 938 K 938
>gi|328777078|ref|XP_003249277.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB2 [Apis mellifera]
Length = 1154
Score = 237 bits (604), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 246/927 (26%), Positives = 395/927 (42%), Gaps = 119/927 (12%)
Query: 34 MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVR---ERFNFGQFPVMLKTRRCHLQGADS 90
M + R ++Y+ L D+ + G + ++ G+ P+ML+++ C L G
Sbjct: 109 MPNEARLRNLTYSAPLYVDITKTIVKDGEDPIETQHQKTFIGKIPIMLRSKYCLLAGLSD 168
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
+ L L E + GGYFI+NG E+V +I ++ ++ S +D + Y K+ +
Sbjct: 169 RDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFSMKDGKYAY--KSEIRS 223
Query: 151 CVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
C+ + + TL + + + G+ + +P+ IV +AL D +
Sbjct: 224 CLEHSSRPTSTLWINMMAKSGASIKKSAIGQRIIAIIPYIKQEIPIMIVFRALGFVADRD 283
Query: 201 IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
I H+ +D+ P + E VK L E + + L IG +
Sbjct: 284 ILEHIIYDFDD-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGT--RGARP 328
Query: 261 GLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQE 320
G+ E A +++ + H+ + + L+ + N+
Sbjct: 329 GVTKEKRIKYAREILQKEMLPHVGIRDFCETKKAYFLEFI-----------------NKR 371
Query: 321 ILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGT 380
+ L G L+ + ++ L K +L + + GK F+ LA IK +K I
Sbjct: 372 LDLAGPLLAFXFRGLFKN-LMKEVRLYAQKFIDRGKDFNL-ELA-IK-------TKIITD 421
Query: 381 SIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRK 440
+ L TG Q Q RAG + RL F +S R V+ G + R+
Sbjct: 422 GLRYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRVNSPIGRDG-KLAKPRQ 479
Query: 441 LLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVG 500
L WG LCP TP+G GL+ ++ ++ + IL L
Sbjct: 480 LHNTLWGMLCPAETPEGAAVGLVKNLALMAYIS-----------VGSQPSPILEFLEEWS 528
Query: 501 MIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAASVIPD 554
M +L ++ S + ++G VG+ + ++++A LR+L+ VS S+I D
Sbjct: 529 M-ENLEEIAPSAIADATKIFVNGCWVGI--HRDPDQLMATLRKLRRQMDIIVSEVSMIRD 585
Query: 555 DLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN----IELIGPF------ 604
+ + G L + R+I + E N EL+G
Sbjct: 586 IRDREIRIYTDAGRISRPLLIVEGQNLLLKKRHIDMLKERDYNNDGWQELVGSGVVEYID 645
Query: 605 ---EQVFMEIRCPDGGDGGRRNAFPAT--HEEIHPTGMLSVVANLTPYSDHNQSPRNMYQ 659
E+ M P+ + A+ T H EIHP +L V A++ P+ DHNQSPRN YQ
Sbjct: 646 TLEEETVMIAMSPEDLRQEKEYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQ 705
Query: 660 CQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAY 719
M KQ MG + R D + L P P+V T + E P G N+IVA+L Y
Sbjct: 706 SAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCY 765
Query: 720 TGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDD-GNKVDRGQKLFRRNKDA--KSLH 776
TGY+ ED++ILN S+V+RG Y++ S G++ ++ +K R+ +++
Sbjct: 766 TGYNQEDSVILNASAVERGFFRSVFYRSYKDSESKRIGDQEEQFEKPTRQTCQGMRNAIY 825
Query: 777 SVIDSDGL-----------PYVGQMIHPGEPYCSIYDKTTNSWRTNSR----KGSESVFV 821
+D DG+ +G+ I E + D TT + + SE+ V
Sbjct: 826 DKLDDDGIIAPGIRVSGDDVVIGKTITLPEADDEL-DSTTKRFTKRDASTFLRNSETGIV 884
Query: 822 DYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGM 881
D V + + NS+ + IR R R P IGDKF+SRHGQKG C + DMPFS G+
Sbjct: 885 DQVMLTL-NSEGY-KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFS-CEGL 941
Query: 882 RPDLIINPHAFPSRMTIAMLLESVAAK 908
PD+IINPHA PSRMTI L+E + K
Sbjct: 942 TPDIIINPHAIPSRMTIGHLIECIQGK 968
>gi|312381454|gb|EFR27200.1| hypothetical protein AND_06234 [Anopheles darlingi]
Length = 1954
Score = 237 bits (604), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 255/950 (26%), Positives = 411/950 (43%), Gaps = 144/950 (15%)
Query: 34 MFDHCRQAKISYTGKLMADV-EFQYLDAGSPV--VRERFNFGQFPVMLKTRRCHLQGADS 90
M + R ++Y+ L D+ + + ++ PV ++ G+ P+ML++ C L
Sbjct: 109 MPNEARLRNLTYSAPLYVDITKTKIVEGQDPVETQHQKTFIGKIPIMLRSTYCLLSQLTD 168
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
+ L L E + GGYFI+NG E+V +I ++ ++ S +D + Y K +
Sbjct: 169 RDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFSMKDGKYAY--KTEIRS 223
Query: 151 CVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
C+ + + TL + + G + G+ + +P+ IV +AL D +
Sbjct: 224 CLEHSSRPTSTLWVNMMARGGQSIKKSAIGQRVIAILPYVKQEIPIMIVFRALGFVADRD 283
Query: 201 IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAE---VQDLSLTTRLQCLQHIGEHFQP 257
I H+ +D+ P + E VK L E VQ+ ++ L IG +
Sbjct: 284 ILEHIIYDFDD-----------PEMMEMVKPSLDEAFVVQEQNV-----ALNFIGA--RG 325
Query: 258 VIDGLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNP 313
G+ + A+ +++ + H+ ++ K L +M+ +L D+
Sbjct: 326 ARPGVTKDKRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDR 385
Query: 314 DSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKN 373
D N+ + L G L+ + ++ +++ + Q I+ GK F+ LA IK
Sbjct: 386 DHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFIDR-GKDFNL-ELA-IK------ 436
Query: 374 PSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGL 433
+K I + L TG Q Q RAG + RL F +S R V+ G
Sbjct: 437 -TKIITDGLRYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRVNSPIGRDG- 493
Query: 434 RTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSIL 493
+ R+L WG +CP TP+G GL+ ++ ++ + IL
Sbjct: 494 KLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYIS-----------VGSQPSPIL 542
Query: 494 RVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VS 547
L M +L ++ S + ++G VG+ + E+++A LR+L+ VS
Sbjct: 543 EFLEEWSM-ENLEEIAPSAIADATKIFVNGCWVGI--HRDPEQLMATLRKLRRQMDIIVS 599
Query: 548 AASVIPD--DLEVGYVPLSLGGAYPGLYLFTSPPKFVRPV------------RNISLPSE 593
S+I D D E+ ++T + RP+ +I + +
Sbjct: 600 EVSMIRDIRDREI--------------RIYTDAGRICRPLLIVEGGSLLLRKHHIDMLKD 645
Query: 594 ESQN------------IELIGPFEQ-VFMEIRCPDGGDGGRRNAFPAT--HEEIHPTGML 638
N +E I E+ M P + A+ T H EIHP +L
Sbjct: 646 RDYNNYGWQVLVASGVVEYIDTLEEETVMIAMTPYDLKQDKEYAYCTTYTHCEIHPAMIL 705
Query: 639 SVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTY 698
V A++ P+ DHNQSPRN YQ M KQ MG + R D + L P P+V T +
Sbjct: 706 GVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPMKPLVTTRSM 765
Query: 699 TKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDD-GN 757
E P G N+IVA+L YTGY+ ED++ILN S+V+RG Y++ S G+
Sbjct: 766 EYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDSESKRIGD 825
Query: 758 KVDRGQKLFRRNKDA--KSLHSVIDSDGL-----------PYVGQMIHPGEPYCSIYDKT 804
+ ++ +K R+ +L+ +D DG+ +G+ I E + D T
Sbjct: 826 QEEQFEKPNRQTCQGMRNALYDKLDEDGIIAPGLRVSGDDVVIGKTITLPETDDDL-DGT 884
Query: 805 TNSWRTNSRKG------SESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRH 858
T R R G SE+ VD V + + NS+ + IR R R P IGDKF+SRH
Sbjct: 885 TK--RFTKRDGSTFLRNSETGIVDQVMLTL-NSEGY-KFCKIRVRSVRIPQIGDKFASRH 940
Query: 859 GQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
GQKG C + DMPF+ G+ PD+IINPHA PSRMTI L+E + K
Sbjct: 941 GQKGTCGIQYRQEDMPFT-CEGITPDIIINPHAIPSRMTIGHLIECIQGK 989
>gi|326436004|gb|EGD81574.1| DNA-directed RNA polymerase II polypeptide [Salpingoeca sp. ATCC
50818]
Length = 1193
Score = 237 bits (604), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 246/968 (25%), Positives = 398/968 (41%), Gaps = 171/968 (17%)
Query: 39 RQAKISYTGKLMADVEFQY---LDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVS 95
R ++Y ++ + E Y D+ + G+ P+ML+++ C L G + L +
Sbjct: 110 RLRNLTYWSEMFVEAEETYRETQDSEPETTTTSVHLGKIPIMLRSKFCLLNGKLNDDLYN 169
Query: 96 LKEEAAEMGGYFILNGLERVF--------RSVILPKQNYPMSMVRSSFRD--RREGYTDK 145
L E + GGYFI+NG E+V +V + ++ P + + + R
Sbjct: 170 LNECPLDPGGYFIINGSEKVLLAQEKMAPNTVFVFEKKDPKYLFVTEIKSVLERSPRPPS 229
Query: 146 AVVIRCVRKDQSS--------VTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTN 197
+++++ +R QS+ VTL Y + V + F G E I+ + D N
Sbjct: 230 SLLVKLLRGSQSAARSGPVLHVTLP-YVRQDVPVVVVFRALGFED--DRSILEHIIYDFN 286
Query: 198 DLEIFNHLTCCYDEKYKKE----------KGAVGSPLVSERVKIILAEVQDLSLTTRLQC 247
D+E+ L DE + + K AV SP +S+ +I A +D+ + +
Sbjct: 287 DMEMMEMLKPSLDEAFVIQNRDVALDWIGKRAVQSPAISKERRIHYA--KDI---LQKEL 341
Query: 248 LQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHT 307
L HIG G E+ A L +M+ +
Sbjct: 342 LPHIGL-------GPHCETKKAF---------------------FLGYMVHRTLQAALRR 373
Query: 308 SVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIK 367
D+ D N+ + + G L + + ++ + IQ ++ N +
Sbjct: 374 RQLDDRDHYGNKRLDMSGPLTGFLFRTLFRNVTKELRSYIQKKL----------NRSEEI 423
Query: 368 KVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRG 427
K+ SKQI + + TG TQ + RAG + RL F +S R ++
Sbjct: 424 KLSAGLNSKQIESGLRYSFATGNWGTQAKA-FEARAGVSQVLNRLTFASTLSHLRRLNSP 482
Query: 428 ASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSK 487
G + R+L WG++CP TP+G GL+ ++ V D+
Sbjct: 483 IERTG-KIAKPRQLHNTHWGYICPAETPEGHAVGLVKNLALMASVTVGGDA--------- 532
Query: 488 MRTSILRVLIGVGMIPSLPKLV-KSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKV 546
T +L +L +GM SL L +S + ++G VG+ E E+VV +L +
Sbjct: 533 --TPVLELLNSIGM-ESLDDLASRSVIRDTTKIFVNGAWVGI--HMEPEEVVRNLHLCRR 587
Query: 547 SAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPS-------------- 592
+ A +I + V + +++++ + RP+ + P
Sbjct: 588 TQADMIQSE-----VSIFRDIREREIHVYSDSGRLTRPLLIVEKPELDDTFHDGTQQQQT 642
Query: 593 --------EESQNIELIGPFEQVF----------------------MEIRCPDG---GDG 619
E+ Q+ + FE + M PD D
Sbjct: 643 LALKKQHLEKLQSAAMQNAFEATYSWSDLVREGLVEYIDVNEEDTTMIAMTPDDFEMSDE 702
Query: 620 GRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRAD 679
TH EIHP+ +L + A++ P+ DHNQSPRN YQ M KQ MG R D
Sbjct: 703 QDLYCTTYTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGIYTTNFHIRLD 762
Query: 680 QKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGM 739
+ L PQ P+V+T + + P G NAIVA++ YTGY+ ED++I+NK +VDRG+
Sbjct: 763 TLAHVLYYPQQPLVKTRSMDYMYFKDLPAGINAIVAIMCYTGYNQEDSVIMNKCAVDRGL 822
Query: 740 CHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDA--KSLHSVIDSDGLPYVGQMIHPGEPY 797
Y++ + G +V + +K R S + ++ DGL G + +
Sbjct: 823 FRSVFYRSYASSEENTGREVIKFEKPSRETCAGMRNSNYGKLEDDGLIAPGTSVTGDD-- 880
Query: 798 CSIYDKTT----NSWRTNSR-------------KGSESVFVDYVAVDMKNSKNLPQKANI 840
+I +T N+ +SR + SE+ +D V V M + I
Sbjct: 881 -AIIGRTMELPPNAEARDSRLARFEKLDKSVFLRASENGIIDQVMVAMGPKGT--RFVKI 937
Query: 841 RFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAM 900
R R R P IGDKF+SRHGQKG C + DMPF+ G+ PD+I+NPHA PSRMTI
Sbjct: 938 RVRSIRVPQIGDKFASRHGQKGTCGMQYSQEDMPFT-CQGITPDIIVNPHAIPSRMTIGH 996
Query: 901 LLESVAAK 908
L+E + K
Sbjct: 997 LIECLLGK 1004
>gi|57641018|ref|YP_183496.1| DNA-directed RNA polymerase subunit B [Thermococcus kodakarensis
KOD1]
gi|57159342|dbj|BAD85272.1| DNA-directed RNA polymerase, subunit B [Thermococcus kodakarensis
KOD1]
Length = 1123
Score = 237 bits (604), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 247/993 (24%), Positives = 414/993 (41%), Gaps = 186/993 (18%)
Query: 15 LVRHHIESFDYMLDEGLSEMFDHCRQA-------KISYTGKLMADVEFQY---------- 57
VR H++S++ +D GL ++ + + K+ + + EFQ
Sbjct: 30 FVRQHLDSYNAFIDHGLQDVVNEFGEVVPDIPNFKVKFGKIRIGQPEFQEAQGQRRPLYP 89
Query: 58 LDA-------GSPVVRE-------------RFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
+DA +P+ E G+ P+MLK++ C L G ++L+ L
Sbjct: 90 MDARIRNLTYSAPLYLEMIPVVNGIEQEPVEVRIGELPIMLKSKACRLYGLSDEELIKLG 149
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
E+ + GGYFI+NG ERV S+ + +K +V R R Q+
Sbjct: 150 EDPKDPGGYFIINGSERVIVSI-------------------EDLAPNKTLVERDER--QN 188
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGI-----------VLKALVDTNDLEIFNHLT 206
V K++ +G L + K+ +L V I V++AL D EI ++
Sbjct: 189 KVVAKVFSYRHGYRALITVERKKDGILYVTIPNVPKPVKFVYVMRALGLLTDKEIVEAVS 248
Query: 207 CCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLS-LTTRLQCLQHIGEHFQPVIDGLQSE 265
P + + ++ ++D S ++T+ + L +IG P G E
Sbjct: 249 --------------DDPRIQQ---VLFDNLEDASDISTQEEALDYIGRLALP---GQPKE 288
Query: 266 SYYAVAETVIRDYIFVHLN----DNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEI 321
AE +I + + H+ + K L M K+ L D+ D N+ +
Sbjct: 289 YRLRRAEHIIDNNLLPHMGVDPENRRAKAYYLGMMALKVLELSLGLRGEDDKDHYANKRL 348
Query: 322 LLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTS 381
L G L+ + ++ + + + G+++ F N+ V +
Sbjct: 349 KLAGDLLKDLFRVAFGQLVKDMQYQMTKTYQRKGERYTFENIQRF--VRNSIRPDVLSER 406
Query: 382 IETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKL 441
IE L TG R G + +R N++ +S R V S + R L
Sbjct: 407 IEHALATGSWPGG-------RTGVSQLLDRTNYMSTLSHLRRVTSPLSRDQPHFEA-RDL 458
Query: 442 LPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGM 501
WG +CP TP+G CGL+ ++ ++ + R +R++ L+ +G+
Sbjct: 459 HGTHWGRICPTETPEGPNCGLVKNLALMSQITTGIPER-EVREY----------LMKMGV 507
Query: 502 IPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSE--IEKVVAHLRRLKVSAA--SVIPDDLE 557
+P + P + V L+G ++G + +E++ A R K+S + +D E
Sbjct: 508 VPIEER---RPAPGLYRVYLNGVLIGTVEDGRKLVERIRADRRAGKISDVINVALYEDEE 564
Query: 558 VGYVPLSLGGAY---PGLYLFTSPPKFVRP-VRNISLPSEESQNIELIGPFEQVFMEIRC 613
V V ++ P + + PK R V I + ++ +G E + E
Sbjct: 565 VKEVYINSDDGRVRRPLIVVENGKPKLTREHVEGIKNGTLTWSDLIRMGVIEYLDAE--- 621
Query: 614 PDGGDGGRRNAFPAT----------HEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMA 663
NA+ AT H E+ P +L + A+L PY +HN +PRN Y MA
Sbjct: 622 ------EEENAYVATWPWEVTEEHTHLELMPAAILGIPASLVPYPEHNAAPRNTYGAGMA 675
Query: 664 KQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYD 723
KQ++G + R D + + + PQ P+V + G ++ P G N +VAVL+Y GY+
Sbjct: 676 KQSLGLGWANFRIRVDTRGHLMHYPQVPLVNSRIMKAVGFEDRPAGQNFVVAVLSYHGYN 735
Query: 724 MEDAMILNKSSVDRGMCHGQIYQT-ETIDLSDDGNKVDR------------GQKLFRRNK 770
MEDA+I+NK+S++RG+ ++T E + G + D G+K +R
Sbjct: 736 MEDAVIINKASIERGLARSTFFRTYEAEEKRYLGGQKDNFEVPSPNIQGYLGEKYYRH-- 793
Query: 771 DAKSLHSVIDSDGLPY-----------VGQMIHPG--EPYCSIYDKTTNSWRTNSR--KG 815
+D DGL + VG+ P E S+ R S +
Sbjct: 794 --------LDEDGLIFPESKVEGKDVLVGRTSPPRFIEEQSSLGSMVLQGRRETSVTVRP 845
Query: 816 SESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPF 875
SE VD V V + + + + R R P +GDKF+SRHGQKGV + P DMP+
Sbjct: 846 SEKGVVDKVIV--TETGDGTKLVKVTVRDLRIPELGDKFASRHGQKGVIGLIVPQEDMPW 903
Query: 876 SGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
+ +G+ PDLI+NPH PSRMT+ L+E++ K
Sbjct: 904 TE-SGIVPDLIVNPHGIPSRMTVGQLIEAIGGK 935
>gi|378754668|gb|EHY64698.1| RNA polymerase [Nematocida sp. 1 ERTm2]
Length = 1088
Score = 236 bits (603), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 244/924 (26%), Positives = 390/924 (42%), Gaps = 161/924 (17%)
Query: 36 DHCRQAKISYTGKLMADVEFQYLDAGSPVVRER-FNFGQFPVMLKTR------------- 81
+ CR ++Y+G ++ DVE+ G ++ R G+ P+ML +R
Sbjct: 93 EECRIRNMTYSGDIVVDVEYTR---GKDIISSRNVVVGKMPIMLGSRLSLQQKDFMESNI 149
Query: 82 ---RCHLQGADSQKLVSLKEEAA-EMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRD 137
+L+ ++ K K E ++GGYFI G+ERV ++ + ++ + FR
Sbjct: 150 GVISSNLRQINNPKYTRPKNECPYDIGGYFICKGVERVL--LMQEQLAKNRILIENDFRG 207
Query: 138 RREGYTDKAVVIRCV---RKDQSSVTLK--LYYLLNGSVRLGFWLQGKEYLLPVGIVLKA 192
D V+ RK ++ V +K L YL + S+ +P+ IV+K
Sbjct: 208 ------DLCAVVTSSSLERKSKTKVVMKKKLLYLAHNSLTED---------VPLNIVMKG 252
Query: 193 LVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIG 252
+ T DLEI +G P S + + T L+ L IG
Sbjct: 253 MGITTDLEI---------------DILIGQPTPS-----------IVHIRTELEALAWIG 286
Query: 253 EHFQPVIDGLQSESYYAVAETVIRDYIFVHL----NDNNDKFNLLIFMLQKLFSLVDHT- 307
+ G++ A + D I H+ D K L M + L D
Sbjct: 287 SRIKTRAGGIEE------ARLFLCDIILAHIPGIGTDMRRKAEYLSVMARMLIDTADGNV 340
Query: 308 -SVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANI 366
S+ ++ D + N+ I L G ++++ ++ L+ + KK + + + + L +
Sbjct: 341 DSLQNDKDFVGNKRIELTGQMLSLLFEDLLKRLNTEIKKALDRVLCKRARAQEMDALHFL 400
Query: 367 KKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHR 426
VM + I T + + TG + + +RAG T RL+ L I V
Sbjct: 401 --VMNRG---LITTGLLRAISTGSWSLKRFR--MERAGITQVLTRLSRLSAIGMCSRVS- 452
Query: 427 GASFAGLRTTS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDF 485
+ F R S R L WG CP TP+GE CGL+ + + D G I
Sbjct: 453 -SQFEKTRKVSGPRALHCSQWGVFCPADTPEGEACGLVKSLAMLTEITPNEDESGVISAL 511
Query: 486 SKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK 545
S +GV I ++ G ++G ++G S+ E++ LR ++
Sbjct: 512 S---------FLGVEDISAISPGDLEGAS---KCWVNGVIIGT--CSDPERMARELRNVR 557
Query: 546 VSAASVIPDDLEVGYVPLSLG-GAYPGLYLFTSPPKFVRPVRNIS--LPSEESQNIELIG 602
S G +P ++G LY+ T + RP+ + LP +I L+
Sbjct: 558 RS-----------GRIPSTVGVWVNKDLYISTETGRLTRPLIIVENCLPRLTRNHIRLLR 606
Query: 603 PFEQVFME------IRCPDGGDGGRRNAFPA----------THEEIHPTGMLSVVANLTP 646
+ + I D + +N+ A TH EI P +L VA + P
Sbjct: 607 EGYKTVNDLLNEGLIEYIDQNEA--KNSLIAVWSTEITDKTTHLEIDPAAILGYVAGVIP 664
Query: 647 YSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEY 706
Y HNQSPRN YQC M KQ +G + + R D + + PQ P+ T ++
Sbjct: 665 YPHHNQSPRNTYQCAMGKQGVGVTGVDQRRRMDGANFFMVNPQRPLAATRGMEIIKYNDL 724
Query: 707 PTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLF 766
P G N +AV++ +GYD+EDA++LNK+S+DRG+ +++T + L
Sbjct: 725 PAGQNLTIAVMSMSGYDIEDALVLNKASIDRGIGRALLFKTHALSL-------------- 770
Query: 767 RRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTT--NSWRTNSRKGSESVFVDYV 824
R S +++ +G+P G + G + D+ T S +G + VD
Sbjct: 771 -RTYPGGSADTIV-GEGIPPPGMKVQEGTTF---IDRRTPMGSKAGAVYRGLDGASVDKT 825
Query: 825 AVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPD 884
A+ M+ +L + H R P IGDKFSSRHGQKGV + P DMPF+ + GM PD
Sbjct: 826 AI-MRTGDDLITIKTVLKEH-RIPRIGDKFSSRHGQKGVVGLILPQEDMPFNEL-GMSPD 882
Query: 885 LIINPHAFPSRMTIAMLLESVAAK 908
L++NPH FPSRMT+ +LE V K
Sbjct: 883 LVMNPHGFPSRMTVGKILELVTGK 906
>gi|432961296|ref|XP_004086596.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB2-like [Oryzias latipes]
Length = 1120
Score = 236 bits (603), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 237/912 (25%), Positives = 390/912 (42%), Gaps = 123/912 (13%)
Query: 34 MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVR---ERFNFGQFPVMLKTRRCHLQGADS 90
M + R ++Y+ L D+ + G ++ ++ G+ P+ML++ C L G
Sbjct: 109 MPNEARLRNLTYSAPLYVDITKTIIKEGEDQLQTQHQKTFIGKIPIMLRSTYCLLSGLTD 168
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
+ L L E + GGYFI+NG E+V +I ++ ++ + +D + YT A
Sbjct: 169 RDLCELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFAKKDSKYAYT--AECRS 223
Query: 151 CVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
C+ + + T+ + + G + G+ + +P+ IV +AL +D +
Sbjct: 224 CLEXSSRPTSTIWVSMMARGGQGVKKSAIGQRIVSTLPYIRQEVPIIIVFRALGFVSDRD 283
Query: 201 IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
I H+ +D+ P + E VK L E + + L IG +
Sbjct: 284 ILEHIIYDFDD-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGS--RGAKP 328
Query: 261 GLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
G+ E A+ V++ + H+ ++ K L +M+ +L D+ D
Sbjct: 329 GVTKERRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 388
Query: 317 QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
N+ + L G L+ + ++ L++ + Q I + GK F+ LA IK ++
Sbjct: 389 GNKRLDLAGPLLAFLFRGMFKNLLKEIRIYAQKFI-DRGKDFNL-ELA-IK-------TR 438
Query: 377 QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
I ++ L TG Q RAG + RL F +S R V+ G +
Sbjct: 439 IISDGLKYSLATGNWGDVKKAH-QARAGVSQVLNRLTFASTLSHLRRVNSPIGRDG-KLA 496
Query: 437 SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
R+L WG +CP TP+G GL+ ++ ++ + IL L
Sbjct: 497 KPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYIS-----------VGSQPSPILEFL 545
Query: 497 IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDL 556
M +L ++ + + ++G VG+ + E+++ LR+L+ ++ +DL
Sbjct: 546 EEWSM-ENLEEISPAAIADATKIFVNGCWVGI--HKDPEQLMNTLRKLRRQMDIIVSEDL 602
Query: 557 EVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDG 616
V V I EE+ V + + D
Sbjct: 603 VASGV-----------------------VEYIDTLEEET-----------VMLAMTPDDL 628
Query: 617 GDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKF 676
+ G TH EIHP+ +L V A++ P+ DHNQSPRN YQ M KQ MG +
Sbjct: 629 QEKGVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHV 688
Query: 677 RADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVD 736
R D + L PQ P+V T + E P G N+IVA+ +YTGY+ ED++I+N+S+VD
Sbjct: 689 RMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVD 748
Query: 737 RGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDA-----KSLHSVIDSDGLPYVGQMI 791
RG Y++ S G D+ + + ++ +++ +D DGL G +
Sbjct: 749 RGFFRSVFYRSYKEQESKKG--FDQEEIFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRV 806
Query: 792 HPGEPY-----CSIYDKTTNSWRTNSR----------KGSESVFVDYVAVDMKNSKNLPQ 836
GE ++ + TN R + SE+ VD V V + +
Sbjct: 807 S-GEDVIIGKTVTLPENDDELDSTNKRYTKRDCSTFLRTSETGIVDQVMVTLNQEGY--K 863
Query: 837 KANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRM 896
IR R R P IGDKF+SRHGQKG C + DMPF+ G+ PD+IINPHA PSRM
Sbjct: 864 FCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFT-CEGITPDIIINPHAIPSRM 922
Query: 897 TIAMLLESVAAK 908
T+ L+E + K
Sbjct: 923 TVGHLIECLQGK 934
>gi|403182531|gb|EJY57456.1| AAEL017213-PA [Aedes aegypti]
Length = 1176
Score = 236 bits (601), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 255/937 (27%), Positives = 407/937 (43%), Gaps = 118/937 (12%)
Query: 34 MFDHCRQAKISYTGKLMADV-EFQYLDAGSPV--VRERFNFGQFPVMLKTRRCHLQGADS 90
M + R ++Y+ L D+ + + ++ PV ++ G+ P+ML++ C L
Sbjct: 110 MPNEARLRNLTYSAPLYVDITKTKIVEGQDPVETQHQKTFIGKIPIMLRSTYCLLSQLTD 169
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
+ L L E + GGYFI+NG E+V +I ++ ++ S +D + Y K+ +
Sbjct: 170 RDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFSMKDGKYAY--KSEIRS 224
Query: 151 CVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
C+ + + TL + G + G+ + +P+ IV +AL D +
Sbjct: 225 CLEHSSRPTSTLWCNMMARGGQSIKKSAIGQRVIAILPYVKQEIPIMIVFRALGFVADRD 284
Query: 201 IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAE---VQDLSLTTRLQCLQHIGEHFQP 257
I H+ +D+ P + E VK L E VQ+ ++ L IG +
Sbjct: 285 ILEHIIYDFDD-----------PEMMEMVKPSLDEAFVVQEQNVA-----LNFIGA--RG 326
Query: 258 VIDGLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNP 313
G+ + A+ +++ + H+ ++ K L +M+ +L D+
Sbjct: 327 ARPGVTKDKRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDR 386
Query: 314 DSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKN 373
D N+ + L G L+ + + + +++ + Q I + GK F+ LA IK
Sbjct: 387 DHYGNKRLDLAGPLMALLFRGLFKSLVKEVRMYAQKFI-DRGKDFNL-ELA-IK------ 437
Query: 374 PSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGL 433
+K I + L TG Q Q RAG + RL F +S R V+ G
Sbjct: 438 -TKIITDGLRYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRVNSPIGRDG- 494
Query: 434 RTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSIL 493
+ R+L WG +CP TP+G GL+ ++ ++ + IL
Sbjct: 495 KLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYIS-----------VGSQPSPIL 543
Query: 494 RVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VS 547
L M +L ++ S + ++G VG+ + E++ A LR+L+ VS
Sbjct: 544 EFLEEWSM-ENLEEIAPSAIADATKIFVNGCWVGI--HRDPEQLTATLRKLRRQMDIIVS 600
Query: 548 AASVIPD--DLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN-------- 597
S+I D D E+ + G L + + +R L + N
Sbjct: 601 EVSMIRDIRDREI-RIYTDAGRICRPLLIVENGSLLLRKNHVDMLKDRDYNNYGWQVLVA 659
Query: 598 ---IELIGPFEQ-VFMEIRCPDGGDGGRRNAFPAT--HEEIHPTGMLSVVANLTPYSDHN 651
+E I E+ M P + A+ T H EIHP +L V A++ P+ DHN
Sbjct: 660 SGVVEYIDTLEEETVMIAMTPYDLKQDKEYAYCTTYTHCEIHPAMILGVCASIIPFPDHN 719
Query: 652 QSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTN 711
QSPRN YQ M KQ MG + R D + L P P+V T + E P G N
Sbjct: 720 QSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPMKPLVTTRSMEYLRFRELPAGIN 779
Query: 712 AIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDD-GNKVDRGQKLFRRNK 770
IVA+L YTGY+ ED++ILN S+V+RG Y++ S G++ ++ +K R+
Sbjct: 780 TIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDSESKKIGDQEEQFEKPNRQTC 839
Query: 771 DA--KSLHSVIDSDGL-----------PYVGQMIHPGEPYCSIYDKTTNSWRTNSRKG-- 815
+L+ +D DG+ +G+ I E + D TT R R G
Sbjct: 840 QGMRNALYDKLDDDGIIAPGLRVSGDDVVIGKTITLPETDDDL-DGTTK--RYTKRDGST 896
Query: 816 ----SESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDI 871
SE+ VD V + + NS+ + IR R R P IGDKF+SRHGQKG C +
Sbjct: 897 FLRNSETGIVDQVMLTL-NSEGY-KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQE 954
Query: 872 DMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
DMPF+ G+ PD+IINPHA PSRMTI L+E + K
Sbjct: 955 DMPFT-CEGLTPDIIINPHAIPSRMTIGHLIECIQGK 990
>gi|403331439|gb|EJY64666.1| DNA-directed RNA polymerase [Oxytricha trifallax]
Length = 1198
Score = 236 bits (601), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 245/929 (26%), Positives = 408/929 (43%), Gaps = 152/929 (16%)
Query: 54 EFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLV-SLKEEAAEMGGYFILNGL 112
+F L+ P+ + F G+ PVM++++ CHL+ ++V + KE + GGYF++NG
Sbjct: 160 KFTILEDSKPI--QTF-LGKVPVMVRSKFCHLRNLQDHEIVRNAKECLYDQGGYFVINGG 216
Query: 113 ERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVR 172
E+V I+ ++ ++V R Y+ A IR ++ + + + ++
Sbjct: 217 EKV----IIAQERMANNIVLVFHRRPPSKYSWVAE-IRSQAENSNKPPQQFMVAIQEKIK 271
Query: 173 LGFWLQGKEYL-------------LPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGA 219
LG G Y +PV I+++AL +D +I N + CYD + + +
Sbjct: 272 LG-EQGGGNYARTICATIPAIREPIPVAILMRALGCVSDKQIINKI--CYDPEDSEMCES 328
Query: 220 VGSPLVSERVKIILAEVQDL------------SLTTRLQCLQHIGE-----HFQPVIDGL 262
+ L E+ ++ E L S TR+Q Q I E H +GL
Sbjct: 329 LKPSL--EQAMTVMTEEDALDFISKRGSGAQYSRDTRIQYAQKILETEFLPHVSMNAEGL 386
Query: 263 QSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEIL 322
+SY+ + +M+ +L + D+ D + +
Sbjct: 387 YKKSYF------------------------VGYMVNRLIQASLGRTSEDDRDYYGKKRMD 422
Query: 323 LPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSI 382
+ G L++ ++ K ++ +I+N GK+ +LA+ K S I +
Sbjct: 423 MAGSLLSGLFRQLFRQTTDDMLKYLKRDIDN-GKQI--LSLASAIK------SDTISRGL 473
Query: 383 ETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLL 442
++ L TG D+Q + G RL F +S R ++ + +G + T R+L
Sbjct: 474 KSALATGNWGKDKQGDVQ-KTGVAQVLNRLTFASSLSHLRRLNTPLAKSG-KLTKPRQLH 531
Query: 443 PESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMI 502
WG +CP TP+G+ CGL+ +++ V+ + +K IL GV +
Sbjct: 532 NSHWGMVCPAETPEGQACGLVKNLSLMSLVS--------VGSPNKTLIEILEDF-GVEDL 582
Query: 503 PSLPKLVKSGPPAVLSVLLDGRVVGV-IPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYV 561
SL ++ V V ++G +G ++++ K + +RR IP ++ +
Sbjct: 583 TSLDPIILQNKELV-KVFVNGNWIGCHRNATDLVKNIKDMRR-----TYTIPKEISI--- 633
Query: 562 PLSLGGAYPG-LYLFTSPPKFVRP---VRNISLPSEESQNIELIG---PFEQVFMEIRCP 614
+ Y + FT + RP V N +L ++ +LI FE + E C
Sbjct: 634 ---VRDIYTKEIKFFTDSGRVQRPLFIVENSALRIKKFHIPQLINGSKNFEDLLQEGLCE 690
Query: 615 ----------------DGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMY 658
D G + + TH EIHP+ +L V A++ P+ DHNQSPRN Y
Sbjct: 691 FLDVEEEETVMIAMTLDDLKGQKAIEYHYTHCEIHPSMILGVCASIIPFPDHNQSPRNTY 750
Query: 659 QCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLA 718
Q M KQ MG + R D + L PQ P+V T + E +G NA +A+
Sbjct: 751 QSAMGKQAMGVYTSNYQMRMDTLAHVLYYPQKPLVCTKSMEFLHFKELSSGLNASIAIAC 810
Query: 719 YTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKV---DRGQKLFRRNKDAKSL 775
YTGY+ ED+++LN+S++DRG ++T D S +G D + R++ D L
Sbjct: 811 YTGYNQEDSIMLNQSAIDRGFFRSVFFRTYD-DCSKEGEVFAIPDFAKTSGRKHGDYDKL 869
Query: 776 HSVIDSDGLPYVGQMIHPGEPYCSIYDK-TTNSWRTNSR--------------KGSESVF 820
D DGL G ++ + K T+N++ + R K SES
Sbjct: 870 ----DIDGLICPGVLVSGDDIIVGKVAKMTSNTFNEDLRDSTAKKFKDCSTPLKHSESGI 925
Query: 821 VDYVAVDMKNSKNLPQK-ANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVT 879
+D V + + + QK ++ R R P IGDKF+SRHGQKG C + D+PF+
Sbjct: 926 IDQVIL---TTNDEAQKFTKVKMRAVRIPQIGDKFASRHGQKGTCGMTYRQEDLPFTR-E 981
Query: 880 GMRPDLIINPHAFPSRMTIAMLLESVAAK 908
G+ PD+I+NPHA PSRMTI L+E + +K
Sbjct: 982 GVVPDMIVNPHAIPSRMTIGHLIECLLSK 1010
>gi|340382420|ref|XP_003389717.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Amphimedon
queenslandica]
Length = 1175
Score = 236 bits (601), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 248/935 (26%), Positives = 391/935 (41%), Gaps = 114/935 (12%)
Query: 34 MFDHCRQAKISYTGKLMADVE--FQYLDAGSPVVRERFNF-GQFPVMLKTRRCHLQGADS 90
M + R ++Y+ L DV+ Y D S F G+ P+ML++ C L
Sbjct: 107 MPNEARLRNLTYSAPLYVDVKKTIIYEDEDSKEDPHPKTFIGKIPIMLRSTYCLLSQLTD 166
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
+ L L E + GGYFI+NG E+V L Q + F + Y A +
Sbjct: 167 RDLNELNECPLDPGGYFIINGSEKV-----LIAQEKMATNTVHVFSKKESKYAHTAEIRS 221
Query: 151 CVRKDQSSV-TLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
+ V TL + L G + G++ + +P+ IV +AL +D +
Sbjct: 222 YIENSSRPVSTLWVSQLSRGGTGVKKSAIGQKIVATLPYIKQEIPIMIVFRALGFVSDRD 281
Query: 201 IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
I H+ + + E + P + E I + Q+++L IG +
Sbjct: 282 ILEHIIYDFTDI---EMMEMLKPSLDEAFVI---QEQNVALN-------FIG--VRGAKP 326
Query: 261 GLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
G+ E A+ +++ + H+ ++ K L +M+ +L D+ D
Sbjct: 327 GVTREKRIKYAKDILQKELLPHVGVSSFCETRKAYFLGYMVHRLLQAALGRRELDDRDHY 386
Query: 317 QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
N+ + L G L+ + + L K +L + + G+ F+ LA IK +K
Sbjct: 387 GNKRLDLAGPLLAFLFRGLFRN-LTKEVRLYAQKFIDKGRDFNL-ELA-IK-------TK 436
Query: 377 QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
I + L TG Q Q RAG + RL F +S R ++ G +
Sbjct: 437 TITDGLRYSLATGNWGDQKKAH-QTRAGVSQVLNRLTFASTLSHLRRLNSPIGRDG-KLA 494
Query: 437 SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
R+L WG +CP TP+G GL+ ++ ++ IL L
Sbjct: 495 RPRQLHNTHWGMICPAETPEGHAVGLVKNLALMGYIS-----------VGSQPAPILEFL 543
Query: 497 IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAAS 550
M +L ++ S + ++G VG+ E E ++ LRRL+ VS S
Sbjct: 544 EEWSM-ENLEEITPSVIANSTKIFVNGNWVGI--HREPEHLMTTLRRLRRQMDIIVSEVS 600
Query: 551 VIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN------------I 598
++ D E + G L K + +I + E N +
Sbjct: 601 MVRDIREREIRIFTDAGRICRPLLIVENQKLLLKKHHIQMLKEREYNNASWQDLVAGGVV 660
Query: 599 ELIGPFEQ-VFMEIRCPD--GGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPR 655
E I E+ M PD +GG TH EIHP +L V A++ P+ DHNQSPR
Sbjct: 661 EYIDCLEEETVMIAMTPDDLSTEGGASYCSTYTHCEIHPAMILGVCASIIPFPDHNQSPR 720
Query: 656 NMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVA 715
N YQ M KQ MG + R D + L PQ P+V T + E P G NAIVA
Sbjct: 721 NTYQSAMGKQAMGVYITNYHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINAIVA 780
Query: 716 VLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDA--- 772
+ +YTGY+ ED++I+N S++DRG+ Y++ + S G D+ + + +D
Sbjct: 781 IASYTGYNQEDSVIMNASAIDRGLFRSVFYRSYKDEESKRG--FDQEEVFEKPTRDTCAG 838
Query: 773 --KSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSR----------------- 813
+ + +D DG+ G + + +I KT + +
Sbjct: 839 MRNAAYDKLDEDGIIAPGLRVSGND---AIIGKTISLPENDDELEGAPKRYQKRDASTFL 895
Query: 814 KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDM 873
+ SE+ +D V + + +++ + IR R R P IGDKF+SRHGQKG C + DM
Sbjct: 896 RASETGIIDQVMLSL--NQDGYKFCKIRVRSVRVPQIGDKFASRHGQKGTCGITYRQEDM 953
Query: 874 PFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
PF+ G+ PD+IINPHA PSRMTI L+E + K
Sbjct: 954 PFT-CEGLSPDVIINPHAIPSRMTIGHLIECLQGK 987
>gi|427798029|gb|JAA64466.1| Putative rna polymerase i second largest subunit, partial
[Rhipicephalus pulchellus]
Length = 1149
Score = 235 bits (600), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 243/929 (26%), Positives = 394/929 (42%), Gaps = 102/929 (10%)
Query: 34 MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFN---FGQFPVMLKTRRCHLQGADS 90
M + R ++Y+ L D+ L V + G+ P+ML++ C L
Sbjct: 109 MPNEARLRNLTYSAPLYVDITKTVLKENEEAVETQHQKTFIGKIPIMLRSTYCLLNNLTD 168
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
+ L L E + GGYFI+NG E+V L Q + F+ + Y KA
Sbjct: 169 RDLSELNECPLDPGGYFIINGSEKV-----LIAQEKMATNTVYVFQMKDSKYAYKAECRS 223
Query: 151 CVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
C+ + + TL + L G + G+ + +P+ IV +AL D +
Sbjct: 224 CLEHSSRPTSTLWVNMLARGGQGVRKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRD 283
Query: 201 IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
I H+ +++ P + E VK L E + + L IG +
Sbjct: 284 ILEHIIYDFED-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGS--RGARP 328
Query: 261 GLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
G+ E ++ +++ + H+ ++ K L +M+ +L D+ D
Sbjct: 329 GVTKEKRIKYSKEILQKEMLPHVGVSDFCETKKAYYLGYMVHRLLLAALGRRELDDRDHY 388
Query: 317 QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
N+ + L G L+ + + L K ++ + + GK F+ LA IK
Sbjct: 389 GNKRLDLAGPLMAFLFRGLFRN-LTKEVRMYAQKFIDRGKDFNL-ELA-IKT------XX 439
Query: 377 QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
I + L TG Q Q RAG + RL + +S R V+ G +
Sbjct: 440 XITDGLRYSLATGNWGDQKKAH-QARAGVSQVLNRLTYASTLSHLRRVNSPIGRDG-KLA 497
Query: 437 SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
R+L WG +CP TP+G GL+ ++ + SY + IL L
Sbjct: 498 KPRQLHNTLWGMICPAETPEGHAVGLVKNLA----LMSYIS-------VGSQPSPILEFL 546
Query: 497 IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAAS 550
M +L ++ S + ++G VG+ + ++++ LR+L+ VS S
Sbjct: 547 EEWSM-ENLEEIAPSAIAEATKIFVNGCWVGI--HRDPDQLMNTLRKLRRQMDIIVSEVS 603
Query: 551 VIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNI-SLPSEESQN-----------I 598
++ D + + G L K + R+I +L E N +
Sbjct: 604 MVRDIRDREIRIYTDAGRICRPLLIVEDQKLLLKRRHIDNLKDREYNNYSWQDLVASGVV 663
Query: 599 ELIGPFEQ--VFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRN 656
E I E+ V + + D D G TH EIHP+ +L V A++ P+ DHNQSPRN
Sbjct: 664 EYIDTLEEETVMLSMTPDDLQDKGLAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRN 723
Query: 657 MYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAV 716
YQ M KQ MG + R D + L P P+ T + E P G N+IVA+
Sbjct: 724 TYQSAMGKQAMGIYITNFHVRMDTLAHVLYYPHKPLTTTRSMEYLRFRELPAGINSIVAI 783
Query: 717 LAYTGYDMEDAMILNKSSVDRGMCHGQIYQT-ETIDLSDDGNKVDRGQKLFRRNKDA--K 773
++YTGY+ ED++I+N S+VDRG Y++ + + G++ ++ +K R
Sbjct: 784 MSYTGYNQEDSIIVNASAVDRGFFRSVFYRSYKDSECKRVGDQEEQFEKPTRETCQGMRN 843
Query: 774 SLHSVIDSDGLPYVGQMIHPGE----PYCSIYDKTTNSWRTNSR----------KGSESV 819
+++ +D DG+ G + + ++ + + TN R + SE+
Sbjct: 844 AIYDKLDDDGIIAPGTRVSGDDVIIGKTITLPENDDDLESTNRRFTKRDASTFLRNSETG 903
Query: 820 FVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVT 879
VD V + + N++ + IR R R P IGDKF+SRHGQKG C + DMPF+
Sbjct: 904 IVDQVMLTV-NAEGY-KFCKIRVRSVRIPQIGDKFASRHGQKGTCGITYRQEDMPFTA-E 960
Query: 880 GMRPDLIINPHAFPSRMTIAMLLESVAAK 908
G+ PD+IINPHA PSRMTI L+E + K
Sbjct: 961 GLTPDIIINPHAIPSRMTIGHLIECLQGK 989
>gi|196009726|ref|XP_002114728.1| DNA directed RNA polymerase II polypeptide B [Trichoplax adhaerens]
gi|190582790|gb|EDV22862.1| DNA directed RNA polymerase II polypeptide B [Trichoplax adhaerens]
Length = 1196
Score = 235 bits (600), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 246/930 (26%), Positives = 393/930 (42%), Gaps = 119/930 (12%)
Query: 34 MFDHCRQAKISYTGKLMADVEFQYLDAGS-PVVR--ERFNFGQFPVMLKTRRCHLQGADS 90
M + R ++Y+ L D+ + P V+ + G+ P+ML++ C L
Sbjct: 111 MSNQARLRNLTYSAPLYVDITKTITKGNNEPEVKCHPKTFIGKIPIMLRSTYCLLHNMAD 170
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
L L E ++GGYFI+NG E+V L Q S F+ + Y A IR
Sbjct: 171 HALTELNECPLDVGGYFIINGSEKV-----LIAQEKMASNTVYVFQKKESKYAYVAE-IR 224
Query: 151 CVRKDQS--SVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDL 199
V ++ S + TL + L G + G++ + +P+ +V +AL D
Sbjct: 225 SVTENSSRPTSTLWVSMLARGGGTSKKSVIGQKIVAAIPYVNQEIPIMVVFRALGFVADR 284
Query: 200 EIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVI 259
+I H+ +D+ P + E VK L E + + L +IG
Sbjct: 285 DILEHIIYDFDD-----------PELMEMVKPSLDEA--FVIQEQNVALNYIGSRGSR-- 329
Query: 260 DGLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDS 315
G+ E A +++ + H+ ++ K L +M+ +L D+ D
Sbjct: 330 SGVTKEKRIKYAREILQKEMLPHVGISDYCETKKAYFLGYMVHRLLLTALGRREVDDRDH 389
Query: 316 LQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPS 375
N+ + L K K+ + +NG+ F+ LA IK +
Sbjct: 390 YGNKRLFRN---------------LLKEVKMYAQKFVDNGRDFNL-ELA-IK-------T 425
Query: 376 KQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRT 435
K I + L TG Q Q RAG + RL F+ +S R ++ G +
Sbjct: 426 KIITDGLRYSLATGNWGDQKKAH-QSRAGVSQVLNRLTFVSTLSHLRRLNSPIGRDG-KL 483
Query: 436 TSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRV 495
R+L WG +CP TP+G+ GL+ ++ ++ + IL
Sbjct: 484 ARPRQLHNTHWGMICPAETPEGQAVGLVKNLALMAYIS-----------VGSQPSPILEF 532
Query: 496 LIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAA 549
L M +L ++ S + + ++G VG+ + E++++ LR+L+ VS
Sbjct: 533 LEEWSM-ENLEEVSHSALASATKIFVNGCWVGI--HRDPEQLMSTLRKLRRQMDVIVSEV 589
Query: 550 SVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNI-SLPSEESQNI----ELIGPF 604
S++ D + + G L K V +I S+ + + + +LI
Sbjct: 590 SMVRDIRDREIRIYTDAGRICRPLLIVENQKLVLKKNHIESMKTADDYEVFGWQDLIANG 649
Query: 605 ---------EQVFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPR 655
E+ M PD G TH EIHP+ +L V A++ P+ DHNQSPR
Sbjct: 650 IVEYVDTLEEETVMIAMTPDYLTAGVNYCRTYTHCEIHPSMILGVCASIIPFPDHNQSPR 709
Query: 656 NMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVA 715
N YQ M KQ MG R D + L PQ P+V T + E P G N IVA
Sbjct: 710 NTYQSAMGKQAMGVYTTNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINTIVA 769
Query: 716 VLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT-ETIDLSDDGNKVDRGQKLFRRNKDA-- 772
+ +YTGY+ ED++I+N+ ++DRG+ Y++ + S D N + +K +
Sbjct: 770 IASYTGYNQEDSIIMNRGAIDRGLFRSVFYRSYRDQESSGDFNSEEIFEKPSKETCSGMH 829
Query: 773 KSLHSVIDSDGLPYVGQMIHPG-----------EPYCSIYDKTTNSWRTNSRKG---SES 818
+++ +D DGL G + G E ++ D + ++ G SES
Sbjct: 830 NAMYDKLDDDGLVAPGTRVSGGDIVIGKTALLPEDADALGDTNKRFVKRDASTGLRSSES 889
Query: 819 VFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGV 878
VD V + + S+ + +R R R P IGDKF+SRHGQKG C + DMPF+
Sbjct: 890 GIVDQVLLTV--SQEGYKFTKVRVRSVRIPQIGDKFASRHGQKGTCGITYRQEDMPFT-C 946
Query: 879 TGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
G+ PD+IINPHA PSRMTI L+E + K
Sbjct: 947 EGITPDIIINPHAIPSRMTIGHLIECLQGK 976
>gi|324120616|dbj|BAJ78699.1| RNA polymerase II second largest subunit [Phraortes illepidus]
Length = 1150
Score = 235 bits (599), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 243/930 (26%), Positives = 401/930 (43%), Gaps = 104/930 (11%)
Query: 34 MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFN---FGQFPVMLKTRRCHLQGADS 90
M + R ++Y+ L D+ + G + + G+ P+ML++ C L G
Sbjct: 84 MPNEARLRNLTYSAPLYVDITKTIIKDGDEPMESQHQKTFIGKIPIMLRSTYCLLNGLTD 143
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
+ L L E + GGYFI+NG E+V +I ++ ++ S +D + Y KA +
Sbjct: 144 RDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFSMKDGKYAY--KAEIRS 198
Query: 151 CVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
C+ + + TL + + G + G+ + +P+ IV +AL D +
Sbjct: 199 CLEHSSRPTSTLWVNMMARGGQSIKKSAIGQRIIAIMPYIKQEIPIMIVFRALGFVADRD 258
Query: 201 IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
I H+ +D++ E + P + E I + Q+++L IG +
Sbjct: 259 ILEHIIYDFDDQ---EMMEMVKPSLDEAFVI---QEQNVALN-------FIGA--RGARP 303
Query: 261 GLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
G+ E A +++ + H+ ++ K L +M+ +L D+ D
Sbjct: 304 GVTKEKRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 363
Query: 317 QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
N+ + L G L+ +L L L K ++ + + GK F+ LA IK +K
Sbjct: 364 GNKRLDLAGPLLA-FLFRGLFKTLMKEVRMYAQKFIDRGKDFNL-ELA-IK-------TK 413
Query: 377 QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
I + L TG Q Q RAG + RL F +S R V+ G +
Sbjct: 414 IITDGLRYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRVNSPIGRDG-KLA 471
Query: 437 SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
R+L WG +CP TP+G GL+ ++ ++ + IL L
Sbjct: 472 KPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYIS-----------VGSQPSPILEFL 520
Query: 497 IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAAS 550
M +L ++ S + ++G VG+ + E+++ LR+L+ VS S
Sbjct: 521 EEWSM-ENLEEIAPSAIADATKIFVNGCWVGI--HRDPEQLMTTLRKLRRQMDIIVSEVS 577
Query: 551 VIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN------------I 598
+I D + + G L K + R+I + + N +
Sbjct: 578 MIRDIRDREIRIYTDAGRICRPLLIVENGKLLLKKRHIDMLKDREYNNYGWQVLVASGVV 637
Query: 599 ELIGPFEQ-VFMEIRCPDGGDGGRRNAFPAT--HEEIHPTGMLSVVANLTPYSDHNQSPR 655
E I E+ M + + A+ T H EIHP +L V A++ P+ DHNQSPR
Sbjct: 638 EYIDTLEEETVMIAMMTEDMKHEKEYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPR 697
Query: 656 NMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVA 715
N YQ M KQ MG + R D + L P P+V T + E P G N++VA
Sbjct: 698 NTYQSAMGKQAMGVYITNYHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSVVA 757
Query: 716 VLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT-ETIDLSDDGNKVDRGQKLFRRNKDA-- 772
+L YTGY+ ED++I+N S+V+RG +++ + + G++ ++ +K R+
Sbjct: 758 ILCYTGYNQEDSVIMNASAVERGFFRSVFFRSYKDAESKRIGDQEEQFEKPTRQTCQGMR 817
Query: 773 KSLHSVIDSDGLPYVGQMIHPGE----PYCSIYDKTTNSWRTNSR----------KGSES 818
+L+ +D DG+ G + + ++ D T R + SE+
Sbjct: 818 NALYDKLDDDGIIAPGIRVSGDDVVIGKTITLPDNEDELEGTTKRFTKRDASTFLRNSET 877
Query: 819 VFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGV 878
VD V + + N++ + IR R R P IGDKF+SRHGQKG C + DMPF+
Sbjct: 878 GIVDQVMLTL-NAEGY-KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFT-C 934
Query: 879 TGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
G+ PD+IINPHA PSRMTI L+E + K
Sbjct: 935 EGLTPDIIINPHAIPSRMTIGHLIECLQGK 964
>gi|291241363|ref|XP_002740582.1| PREDICTED: DNA directed RNA polymerase II polypeptide B-like
[Saccoglossus kowalevskii]
Length = 1175
Score = 235 bits (599), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 237/931 (25%), Positives = 403/931 (43%), Gaps = 107/931 (11%)
Query: 34 MFDHCRQAKISYTGKLMADVEFQYLDAG---SPVVRERFNFGQFPVMLKTRRCHLQGADS 90
M + R ++Y+ L D+ + G ++ G+ P+ML++ C L G
Sbjct: 109 MPNEARLRNLTYSAPLYVDITKTIVKEGDEPQETQHQKTFIGKIPIMLRSTYCLLSGLTD 168
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
+ L L E + GGYFI+NG E+V +I ++ ++ + +D + YT +
Sbjct: 169 RDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFAKKDSKYAYTGECR--S 223
Query: 151 CVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
C+ + + TL ++ + G + G+ + +P+ IV +AL +D +
Sbjct: 224 CLEHSSRPTSTLWVHMMARGGQGVRKSAIGQRIVAALPYIRQEIPIMIVFRALGFVSDRD 283
Query: 201 IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
I H+ +D+ P + E VK L E + + L IG +
Sbjct: 284 ILEHIIYDFDD-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGA--RGARP 328
Query: 261 GLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
G+ E A +++ + H+ ++ K L +M+ +L D+ D
Sbjct: 329 GVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 388
Query: 317 QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
N+ + L G L+ + ++ +++ + Q I + GK F+ LA IK ++
Sbjct: 389 GNKRLDLAGPLLAFLFRHLFKNLMKEVRIYAQKFI-DKGKDFNL-ELA-IK-------TR 438
Query: 377 QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
I ++ L TG Q Q RAG + RL F +S R ++ G +
Sbjct: 439 IITDGLKYSLATGNWGEQKKAH-QARAGVSQVLNRLTFASTLSHLRRLNSPIGRDG-KLA 496
Query: 437 SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
R+L WG +CP TP+G+ GL+ ++ ++ + IL L
Sbjct: 497 RPRQLHNTLWGMICPAETPEGQAVGLVKNLALMAYIS-----------VGSQPSPILEFL 545
Query: 497 IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAAS 550
M +L ++ S + ++G VG+ + E+++ L++L+ VS S
Sbjct: 546 EEWSM-ENLEEIAASAINEATKIFVNGCWVGI--HRDPEQLMNTLKKLRRQMDIIVSEVS 602
Query: 551 VIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN------------I 598
++ D E + G L K + ++I + E N +
Sbjct: 603 MVRDIREKEIRIYTDAGRICRPLLIVEKQKLLLKKKHIDMLKEREYNNYSWQDLVASGVV 662
Query: 599 ELIGPFEQ--VFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRN 656
E I E+ V + + D + G TH EIHP+ +L V A++ P+ DHNQSPRN
Sbjct: 663 EYIDTLEEETVMLAMTPDDLQEKGMGYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRN 722
Query: 657 MYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAV 716
YQ M KQ MG + R D + L PQ P+V T + E P G N+IVA+
Sbjct: 723 TYQSAMGKQAMGVYITNYHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAI 782
Query: 717 LAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDA---- 772
+YTGY+ ED++I+N S+V+RG Y++ S G +D+ + + ++++
Sbjct: 783 ASYTGYNQEDSVIMNLSAVERGFFRSVFYRSYRDQESKKG--LDQEEVFEKPDRESCQGM 840
Query: 773 -KSLHSVIDSDGLPYVGQMIHPGEPYCSIY-------DKTTNSWRTNSRKGS-------E 817
+++ +D DG+ G + + D+ + R +++ S E
Sbjct: 841 RMAVYDKLDDDGIIAPGSRVSGDDVLIGKTVTLPENDDELEGTTRRFTKRDSSTFMRRTE 900
Query: 818 SVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSG 877
+ VD V V + + I+ R R P IGDKF+SRHGQKG C + DMPF+
Sbjct: 901 TGIVDQVMVSINQEGY--KFCKIKIRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTA 958
Query: 878 VTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
G+ PD+IINPHA PSRMTI L+E + K
Sbjct: 959 -EGITPDIIINPHAIPSRMTIGHLIECLQGK 988
>gi|195392246|ref|XP_002054770.1| RNA polymerase II 140kD subunit [Drosophila virilis]
gi|194152856|gb|EDW68290.1| RNA polymerase II 140kD subunit [Drosophila virilis]
Length = 1176
Score = 235 bits (599), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 253/954 (26%), Positives = 406/954 (42%), Gaps = 152/954 (15%)
Query: 34 MFDHCRQAKISYTGKLMADV-EFQYLDAGSPV--VRERFNFGQFPVMLKTRRCHLQGADS 90
M + R ++Y+ L D+ + + ++ PV ++ G+ P+ML++ C L
Sbjct: 110 MPNEARLRNLTYSAPLYVDITKTKNVEGMDPVETQHQKTFIGKIPIMLRSTYCLLSQLTD 169
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
+ L L E + GGYFI+NG E+V +I ++ ++ S +D + Y K +
Sbjct: 170 RDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFSMKDGK--YAFKTEIRS 224
Query: 151 CVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
C+ + + TL + + GS + G+ + +P+ IV +AL D +
Sbjct: 225 CLEHSSRPTSTLWVNMMARGSQNIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRD 284
Query: 201 IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAE---VQDLSLTTRLQCLQHIGEHFQP 257
I H+ +D+ P + E VK L E VQ+ ++ L IG +
Sbjct: 285 ILEHIIYDFDD-----------PEMMEMVKPSLDEAFVVQEQNVA-----LNFIGA--RG 326
Query: 258 VIDGLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNP 313
G+ + A+ +++ + H+ ++ K L +M+ +L D+
Sbjct: 327 ARPGVTKDKRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDR 386
Query: 314 DSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKN 373
D N+ + L G L+ + ++ +++ + Q I+ GK F N++ ++ N
Sbjct: 387 DHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYTQKFIDR-GKDF------NLELAIKTN 439
Query: 374 PSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGL 433
I + L TG Q Q RAG + RL F +S R V+ G
Sbjct: 440 I---ITDGLRYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRVNSPIGRDG- 494
Query: 434 RTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSIL 493
+ R+L WG LCP TP+G GL+ ++ ++ + IL
Sbjct: 495 KLAKPRQLHNTLWGMLCPAETPEGAAVGLVKNLALMAYIS-----------VGSQPSPIL 543
Query: 494 RVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VS 547
L M +L ++ S + ++G VG+ + E+++A LR+L+ VS
Sbjct: 544 EFLEEWSM-ENLEEIAPSAIADATKIFVNGCWVGI--HRDPEQLMATLRKLRRQMDIIVS 600
Query: 548 AASVIPD--DLEVGYVPLSLGGAYPGLYLFTSPPKFVRPV------------RNISLPSE 593
S+I D D E+ ++T + RP+ ++ + E
Sbjct: 601 EVSMIRDIRDREI--------------RIYTDAGRICRPLLIVENGTLLLKKTHVEMLKE 646
Query: 594 ESQN------------IELIGPFEQ-VFMEIRCPDGGDGGRRNAFPAT--HEEIHPTGML 638
N +E I E+ M P + A+ T H EIHP +L
Sbjct: 647 RDYNNYSWQVLVASGVVEYIDTLEEETVMIAMSPYDLKQDKDYAYCTTYTHCEIHPAMIL 706
Query: 639 SVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTY 698
V A++ P+ DHNQSPRN YQ M KQ MG + R D + L P P+V T +
Sbjct: 707 GVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPMKPLVTTRSM 766
Query: 699 TKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT-------ETID 751
E P G N+IVA+L YTGY+ ED++ILN S+V+RG Y++ D
Sbjct: 767 EYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDAENKRVGD 826
Query: 752 LSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKT------- 804
++ K RG RN L D DG+ G + + + KT
Sbjct: 827 QEENFEKPHRGTCQGMRNAHYDKL----DDDGIIAPGIRVSGDD---VVIGKTITLPEND 879
Query: 805 ----TNSWRTNSR------KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKF 854
+N+ R R + SE+ VD V + + NS+ + IR R R P IGDKF
Sbjct: 880 DELDSNTKRFAKRDASTFLRNSETGIVDQVMLTL-NSEGY-KFCKIRVRSVRIPQIGDKF 937
Query: 855 SSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
+SRHGQKG C + DMPF+ G+ PD+IINPHA PSRMTI L+E + K
Sbjct: 938 ASRHGQKGTCGIQYRQEDMPFT-CEGLAPDIIINPHAIPSRMTIGHLIECLQGK 990
>gi|109104775|ref|XP_001114787.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2-like, partial
[Macaca mulatta]
Length = 449
Score = 234 bits (598), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 121/249 (48%), Positives = 162/249 (65%), Gaps = 3/249 (1%)
Query: 661 QMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYT 720
++ KQTMGF + + R+D KLY LQTPQ+P+VR + Y Y +D YP GTNAIVAV++YT
Sbjct: 4 RVGKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVAVISYT 63
Query: 721 GYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVID 780
GYDMEDAMI+NK+S +RG HG +Y++E IDLS+ + D + D + L +D
Sbjct: 64 GYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKIKQGDSSLVFGIKPGDPRILQK-LD 122
Query: 781 SDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKA-N 839
DGLP++G + G+PY S + T K E+ VD + V ++ + K
Sbjct: 123 DDGLPFIGAKLQYGDPYYSYLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGKFKCVC 182
Query: 840 IRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIA 899
I R RNP IGDKF+SRHGQKG+ S+LWP DMPF+ +GM PD++ NPH FPSRMTI
Sbjct: 183 ITMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFT-ESGMVPDILFNPHGFPSRMTIG 241
Query: 900 MLLESVAAK 908
ML+ES+A K
Sbjct: 242 MLIESMAGK 250
>gi|195109863|ref|XP_001999501.1| GI23040 [Drosophila mojavensis]
gi|193916095|gb|EDW14962.1| GI23040 [Drosophila mojavensis]
Length = 1176
Score = 234 bits (598), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 253/954 (26%), Positives = 406/954 (42%), Gaps = 152/954 (15%)
Query: 34 MFDHCRQAKISYTGKLMADV-EFQYLDAGSPV--VRERFNFGQFPVMLKTRRCHLQGADS 90
M + R ++Y+ L D+ + + ++ PV ++ G+ P+ML++ C L
Sbjct: 110 MPNEARLRNLTYSAPLYVDITKTKNVEGMDPVETQHQKTFIGKIPIMLRSTYCLLSQLTD 169
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
+ L L E + GGYFI+NG E+V +I ++ ++ S +D + Y K +
Sbjct: 170 RDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFSMKDGK--YAFKTEIRS 224
Query: 151 CVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
C+ + + TL + + GS + G+ + +P+ IV +AL D +
Sbjct: 225 CLEHSSRPTSTLWVNMMARGSQNIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRD 284
Query: 201 IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAE---VQDLSLTTRLQCLQHIGEHFQP 257
I H+ +D+ P + E VK L E VQ+ ++ L IG +
Sbjct: 285 ILEHIIYDFDD-----------PEMMEMVKPSLDEAFVVQEQNVA-----LNFIGA--RG 326
Query: 258 VIDGLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNP 313
G+ + A+ +++ + H+ ++ K L +M+ +L D+
Sbjct: 327 ARPGVTKDKRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDR 386
Query: 314 DSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKN 373
D N+ + L G L+ + ++ +++ + Q I+ GK F N++ ++ N
Sbjct: 387 DHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYTQKFIDR-GKDF------NLELAIKTN 439
Query: 374 PSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGL 433
I + L TG Q Q RAG + RL F +S R V+ G
Sbjct: 440 I---ITDGLRYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRVNSPIGRDG- 494
Query: 434 RTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSIL 493
+ R+L WG LCP TP+G GL+ ++ ++ + IL
Sbjct: 495 KLAKPRQLHNTLWGMLCPAETPEGAAVGLVKNLALMAYIS-----------VGSQPSPIL 543
Query: 494 RVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VS 547
L M +L ++ S + ++G VG+ + E+++A LR+L+ VS
Sbjct: 544 EFLEEWSM-ENLEEIAPSAIADATKIFVNGCWVGI--HRDPEQLMATLRKLRRQMDIIVS 600
Query: 548 AASVIPD--DLEVGYVPLSLGGAYPGLYLFTSPPKFVRPV------------RNISLPSE 593
S+I D D E+ ++T + RP+ ++ + E
Sbjct: 601 EVSMIRDIRDREI--------------RIYTDAGRICRPLLIVENGTLLLKKTHVEMLKE 646
Query: 594 ESQN------------IELIGPFEQ-VFMEIRCPDGGDGGRRNAFPAT--HEEIHPTGML 638
N +E I E+ M P + A+ T H EIHP +L
Sbjct: 647 RDYNNYSWQVLVASGVVEYIDTLEEETVMIAMSPYDLKQDKDYAYCTTYTHCEIHPAMIL 706
Query: 639 SVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTY 698
V A++ P+ DHNQSPRN YQ M KQ MG + R D + L P P+V T +
Sbjct: 707 GVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPMKPLVTTRSM 766
Query: 699 TKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT-------ETID 751
E P G N+IVA+L YTGY+ ED++ILN S+V+RG Y++ D
Sbjct: 767 EYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDAENKRVGD 826
Query: 752 LSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKT------- 804
++ K RG RN L D DG+ G + + + KT
Sbjct: 827 QEENFEKPHRGTCQGMRNAHYDKL----DDDGIIAPGIRVSGDD---VVIGKTITLPEND 879
Query: 805 ----TNSWRTNSR------KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKF 854
+N+ R R + SE+ VD V + + NS+ + IR R R P IGDKF
Sbjct: 880 DELDSNTKRFAKRDASTFLRNSETGIVDQVMLTL-NSEGY-KFCKIRVRSVRIPQIGDKF 937
Query: 855 SSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
+SRHGQKG C + DMPF+ G+ PD+IINPHA PSRMTI L+E + K
Sbjct: 938 ASRHGQKGTCGIQYRQEDMPFT-CEGLAPDIIINPHAIPSRMTIGHLIECLQGK 990
>gi|194745991|ref|XP_001955468.1| GF16238 [Drosophila ananassae]
gi|190628505|gb|EDV44029.1| GF16238 [Drosophila ananassae]
Length = 1176
Score = 234 bits (598), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 252/954 (26%), Positives = 406/954 (42%), Gaps = 152/954 (15%)
Query: 34 MFDHCRQAKISYTGKLMADV-EFQYLDAGSPV--VRERFNFGQFPVMLKTRRCHLQGADS 90
M + R ++Y+ L D+ + + ++ P+ ++ G+ P+ML++ C L
Sbjct: 110 MPNEARLRNLTYSAPLYVDITKTKNVEGQDPIETQHQKTFIGKIPIMLRSTYCLLSQLTD 169
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
+ L L E + GGYFI+NG E+V +I ++ ++ S +D + Y K +
Sbjct: 170 RDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFSMKDGK--YAFKTEIRS 224
Query: 151 CVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
C+ + + TL + + GS + G+ + +P+ IV +AL D +
Sbjct: 225 CLEHSSRPTSTLWVNMMARGSQNIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRD 284
Query: 201 IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAE---VQDLSLTTRLQCLQHIGEHFQP 257
I H+ +D+ P + E VK L E VQ+ ++ L IG +
Sbjct: 285 ILEHIIYDFDD-----------PEMMEMVKPSLDEAFVVQEQNVA-----LNFIGA--RG 326
Query: 258 VIDGLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNP 313
G+ + A+ +++ + H+ ++ K L +M+ +L D+
Sbjct: 327 ARPGVTKDKRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDR 386
Query: 314 DSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKN 373
D N+ + L G L+ + ++ +++ + Q I+ GK F N++ ++ N
Sbjct: 387 DHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYTQKFIDR-GKDF------NLELAIKTN 439
Query: 374 PSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGL 433
I + L TG Q Q RAG + RL F +S R V+ G
Sbjct: 440 I---ITDGLRYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRVNSPIGRDG- 494
Query: 434 RTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSIL 493
+ R+L WG LCP TP+G GL+ ++ ++ + IL
Sbjct: 495 KLAKPRQLHNTLWGMLCPAETPEGAAVGLVKNLALMAYIS-----------VGSQPSPIL 543
Query: 494 RVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VS 547
L M +L ++ S + ++G VG+ + E+++A LR+L+ VS
Sbjct: 544 EFLEEWSM-ENLEEIAPSAIADATKIFVNGCWVGI--HRDPEQLMATLRKLRRQMDIIVS 600
Query: 548 AASVIPD--DLEVGYVPLSLGGAYPGLYLFTSPPKFVRPV------------RNISLPSE 593
S+I D D E+ ++T + RP+ ++ + E
Sbjct: 601 EVSMIRDIRDREI--------------RIYTDAGRICRPLLIVENGSLLLKKTHVEMLKE 646
Query: 594 ESQN------------IELIGPFEQ-VFMEIRCPDGGDGGRRNAFPAT--HEEIHPTGML 638
N +E I E+ M P + A+ T H EIHP +L
Sbjct: 647 RDYNNYSWQVLVASGVVEYIDTLEEETVMIAMSPYDLKQDKDYAYCTTYTHCEIHPAMIL 706
Query: 639 SVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTY 698
V A++ P+ DHNQSPRN YQ M KQ MG + R D + L P P+V T +
Sbjct: 707 GVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPMKPLVTTRSM 766
Query: 699 TKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT-------ETID 751
E P G N+IVA+L YTGY+ ED++ILN S+V+RG Y++ D
Sbjct: 767 EYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDSENKRVGD 826
Query: 752 LSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKT------- 804
++ K RG RN L D DG+ G + + + KT
Sbjct: 827 QEENFEKPHRGTCQGMRNAHYDKL----DDDGIIAPGIRVSGDD---VVIGKTITLPEND 879
Query: 805 ----TNSWRTNSR------KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKF 854
+N+ R R + SE+ VD V + + NS+ + IR R R P IGDKF
Sbjct: 880 DELDSNTKRFAKRDASTFLRNSETGIVDQVMLTL-NSEGY-KFCKIRVRSVRIPQIGDKF 937
Query: 855 SSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
+SRHGQKG C + DMPF+ G+ PD+IINPHA PSRMTI L+E + K
Sbjct: 938 ASRHGQKGTCGIQYRQEDMPFT-CEGLAPDIIINPHAIPSRMTIGHLIECLQGK 990
>gi|327311708|ref|YP_004338605.1| DNA-directed RNA polymerase subunit beta [Thermoproteus uzoniensis
768-20]
gi|326948187|gb|AEA13293.1| DNA-directed RNA polymerase subunit beta [Thermoproteus uzoniensis
768-20]
Length = 1127
Score = 234 bits (597), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 252/926 (27%), Positives = 407/926 (43%), Gaps = 139/926 (15%)
Query: 37 HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
R +Y+ + V Y+D P E G+ P+M+K+++C+L ++
Sbjct: 98 EARLRNATYSAPMYLTVTL-YVD-DEPYATETIYAGELPIMVKSKKCNLTRLKPEEYPKR 155
Query: 97 KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQ 156
E+ + GGYFI+NG ERV S + P+ V DK IR + K
Sbjct: 156 FEDPEDPGGYFIINGSERVVISQEDLVTDRPIYDV-----------GDKPT-IRYLAKVI 203
Query: 157 SS-----VTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDE 211
S+ T+ + Y +G + + L +P + ++A+ +D +I L D
Sbjct: 204 STGPGYRATMTVEYHKDGVIYV--TLSAIPVRIPFTVYMRAMGLESDQDIV--LAVSDDP 259
Query: 212 KYKKE---KGAVGSPLVSER--------VKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
+KE G + + R KI + + + + + LQ L ++F P ++
Sbjct: 260 DIQKELLPSLLAGQEIAATRDDALDFVGGKIAVGQPRPIRIERALQILD---KYFLPNLN 316
Query: 261 GLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQE 320
Q A+ E I+ K LL +++ L + D+ D + N+
Sbjct: 317 P-QKPDEKAMEEARIK------------KALLLGQVVKGLIEMQLGRRKPDDKDHVANKR 363
Query: 321 ILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGT 380
+ L L+ + ++ +L+ E++N +K+ K P Q
Sbjct: 364 VRLVNDLLAQLFRTVMKQFLQ--------ELKNQLEKY---------YARGKIPHLQTIV 406
Query: 381 SIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT---S 437
+ + + + A TG + + G + +R N+L +S+ R V S RT
Sbjct: 407 RPDIITERVKQALATGNWVGGKTGVSQILDRTNYLSTLSYLRRVVSSLS----RTQPHFE 462
Query: 438 VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLI 497
R L P WG LC V TP+G+ GL+ ++ + D + + L
Sbjct: 463 ARDLHPTQWGRLCAVETPEGQNVGLVKNLALLAEITIGVDE-----------AVVEKTLN 511
Query: 498 GVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLE 557
+G++P L + G V L+GR++G+ E++V LR+++ I D++
Sbjct: 512 ELGVVPVLE--ARRGGLEGAEVYLNGRLIGI--HQNPEELVKTLRKMRRQGK--ISDEVN 565
Query: 558 VGYVPLSLGGAYPGLYLFTSPPKFVRPVRNIS-----LPSEESQNI---ELIGPFEQVFM 609
V + LG A +Y+ + RP+ I L E Q + EL
Sbjct: 566 VAH----LGDA---VYVNCDGGRIRRPLLVIEDGKLKLTKEHVQKLASGELTWNDLVKMG 618
Query: 610 EIRCPDGGDGGRRNAFPA----------THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQ 659
+ D + NA+ A TH EI P+ +L +A++ PY +HNQSPRN Y+
Sbjct: 619 VVEYLDADE--EENAYIAVGPEPDMSKYTHMEIVPSSILGAIASIIPYLEHNQSPRNQYE 676
Query: 660 CQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAY 719
MAKQ++G ++ D + + L P+ PIV T G P G NA+VA+L Y
Sbjct: 677 AAMAKQSLGLPQANFMYKLDSRGHMLYYPERPIVTTRGLELIGYSRKPAGQNAVVALLTY 736
Query: 720 TGYDMEDAMILNKSSVDRGMCHGQIYQT-ETIDLSDDGNKVDRGQ--KLFRRNKDAKSLH 776
TGY++EDA+I+NKSSVDRG+ Y+T ET + G + DR + R +
Sbjct: 737 TGYNIEDAVIMNKSSVDRGLFRSNFYRTYETEEQKYPGGEEDRIEVPDSSARGYRGPEAY 796
Query: 777 SVIDSDGLP----YV--GQMI----HPGEPYCSIYDKTTNSWRTNS----RKGSESVFVD 822
S +D DG+ YV G++I P Y ++ + R ++ R+G + VD
Sbjct: 797 SHLDEDGIAPPEVYVTGGEVIIGKTAPPRFYMTLETEKILKERRDASIPVRRGERGI-VD 855
Query: 823 YVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMR 882
V + N + +R R R P +GDKF+SRHGQKGV L DMPF+ G+
Sbjct: 856 RVVITESPEGN--KLVKVRLRELRVPELGDKFASRHGQKGVIGMLLRQEDMPFTE-DGIV 912
Query: 883 PDLIINPHAFPSRMTIAMLLESVAAK 908
PD+I+NPHA PSRMT+ LLES+A K
Sbjct: 913 PDIIVNPHAMPSRMTVGQLLESIAGK 938
>gi|195145272|ref|XP_002013620.1| GL24239 [Drosophila persimilis]
gi|198452242|ref|XP_001358686.2| GA16485 [Drosophila pseudoobscura pseudoobscura]
gi|194102563|gb|EDW24606.1| GL24239 [Drosophila persimilis]
gi|198131848|gb|EAL27829.2| GA16485 [Drosophila pseudoobscura pseudoobscura]
Length = 1176
Score = 234 bits (597), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 253/954 (26%), Positives = 406/954 (42%), Gaps = 152/954 (15%)
Query: 34 MFDHCRQAKISYTGKLMADV-EFQYLDAGSPV--VRERFNFGQFPVMLKTRRCHLQGADS 90
M + R ++Y+ L D+ + + ++ PV ++ G+ P+ML++ C L
Sbjct: 110 MPNEARLRNLTYSAPLYVDITKTKNVEGLDPVETQHQKTFIGKIPIMLRSTYCLLSQLTD 169
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
+ L L E + GGYFI+NG E+V +I ++ ++ S +D + Y K +
Sbjct: 170 RDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFSMKDGK--YAFKTEIRS 224
Query: 151 CVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
C+ + + TL + + GS + G+ + +P+ IV +AL D +
Sbjct: 225 CLEHSSRPTSTLWVNMMARGSQNIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRD 284
Query: 201 IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAE---VQDLSLTTRLQCLQHIGEHFQP 257
I H+ +D+ P + E VK L E VQ+ ++ L IG +
Sbjct: 285 ILEHIIYDFDD-----------PEMMEMVKPSLDEAFVVQEQNVA-----LNFIGA--RG 326
Query: 258 VIDGLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNP 313
G+ + A+ +++ + H+ ++ K L +M+ +L D+
Sbjct: 327 ARPGVTKDKRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDR 386
Query: 314 DSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKN 373
D N+ + L G L+ + ++ +++ + Q I+ GK F N++ ++ N
Sbjct: 387 DHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYTQKFIDR-GKDF------NLELAIKTN 439
Query: 374 PSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGL 433
I + L TG Q Q RAG + RL F +S R V+ G
Sbjct: 440 I---ITDGLRYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRVNSPIGRDG- 494
Query: 434 RTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSIL 493
+ R+L WG LCP TP+G GL+ ++ ++ + IL
Sbjct: 495 KLAKPRQLHNTLWGMLCPAETPEGAAVGLVKNLALMAYIS-----------VGSQPSPIL 543
Query: 494 RVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VS 547
L M +L ++ S + ++G VG+ + E+++A LR+L+ VS
Sbjct: 544 EFLEEWSM-ENLEEIAPSAIADATKIFVNGCWVGI--HRDPEQLMATLRKLRRQMDIIVS 600
Query: 548 AASVIPD--DLEVGYVPLSLGGAYPGLYLFTSPPKFVRPV------------RNISLPSE 593
S+I D D E+ ++T + RP+ ++ + E
Sbjct: 601 EVSMIRDIRDREI--------------RIYTDAGRICRPLLIVENGSLLLKKTHVEMLKE 646
Query: 594 ESQN------------IELIGPFEQ-VFMEIRCPDGGDGGRRNAFPAT--HEEIHPTGML 638
N +E I E+ M P + A+ T H EIHP +L
Sbjct: 647 RDYNNYSWQVLVASGVVEYIDTLEEETVMIAMSPYDLKQDKDYAYCTTYTHCEIHPAMIL 706
Query: 639 SVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTY 698
V A++ P+ DHNQSPRN YQ M KQ MG + R D + L P P+V T +
Sbjct: 707 GVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPMKPLVTTRSM 766
Query: 699 TKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT-------ETID 751
E P G N+IVA+L YTGY+ ED++ILN S+V+RG Y++ D
Sbjct: 767 EYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDSENKRVGD 826
Query: 752 LSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKT------- 804
++ K RG RN L D DG+ G + + + KT
Sbjct: 827 QEENFEKPHRGTCQGMRNAHYDKL----DDDGIIAPGIRVSGDD---VVIGKTITLPEND 879
Query: 805 ----TNSWRTNSR------KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKF 854
+N+ R R + SE+ VD V + + NS+ + IR R R P IGDKF
Sbjct: 880 DELDSNTKRFAKRDASTFLRNSETGIVDQVMLTL-NSEGY-KFCKIRVRSVRIPQIGDKF 937
Query: 855 SSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
+SRHGQKG C + DMPF+ G+ PD+IINPHA PSRMTI L+E + K
Sbjct: 938 ASRHGQKGTCGIQYRQEDMPFT-CEGLAPDIIINPHAIPSRMTIGHLIECLQGK 990
>gi|195446199|ref|XP_002070673.1| GK12191 [Drosophila willistoni]
gi|194166758|gb|EDW81659.1| GK12191 [Drosophila willistoni]
Length = 1176
Score = 234 bits (597), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 253/954 (26%), Positives = 406/954 (42%), Gaps = 152/954 (15%)
Query: 34 MFDHCRQAKISYTGKLMADV-EFQYLDAGSPV--VRERFNFGQFPVMLKTRRCHLQGADS 90
M + R ++Y+ L D+ + + ++ PV ++ G+ P+ML++ C L
Sbjct: 110 MPNEARLRNLTYSAPLYVDITKTKNVEGLDPVETQHQKTFIGKIPIMLRSTYCLLSQLTD 169
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
+ L L E + GGYFI+NG E+V +I ++ ++ S +D + Y K +
Sbjct: 170 RDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFSMKDGK--YAFKTEIRS 224
Query: 151 CVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
C+ + + TL + + GS + G+ + +P+ IV +AL D +
Sbjct: 225 CLEHSSRPTSTLWVNMMARGSQNIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRD 284
Query: 201 IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAE---VQDLSLTTRLQCLQHIGEHFQP 257
I H+ +D+ P + E VK L E VQ+ ++ L IG +
Sbjct: 285 ILEHIIYDFDD-----------PEMMEMVKPSLDEAFVVQEQNVA-----LNFIGA--RG 326
Query: 258 VIDGLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNP 313
G+ + A+ +++ + H+ ++ K L +M+ +L D+
Sbjct: 327 ARPGVTKDKRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDR 386
Query: 314 DSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKN 373
D N+ + L G L+ + ++ +++ + Q I+ GK F N++ ++ N
Sbjct: 387 DHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYTQKFIDR-GKDF------NLELAIKTN 439
Query: 374 PSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGL 433
I + L TG Q Q RAG + RL F +S R V+ G
Sbjct: 440 I---ITDGLRYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRVNSPIGRDG- 494
Query: 434 RTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSIL 493
+ R+L WG LCP TP+G GL+ ++ ++ + IL
Sbjct: 495 KLAKPRQLHNTLWGMLCPAETPEGAAVGLVKNLALMAYIS-----------VGSQPSPIL 543
Query: 494 RVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VS 547
L M +L ++ S + ++G VG+ + E+++A LR+L+ VS
Sbjct: 544 EFLEEWSM-ENLEEIAPSAIADATKIFVNGCWVGI--HRDPEQLMATLRKLRRQMDIIVS 600
Query: 548 AASVIPD--DLEVGYVPLSLGGAYPGLYLFTSPPKFVRPV------------RNISLPSE 593
S+I D D E+ ++T + RP+ ++ + E
Sbjct: 601 EVSMIRDIRDREI--------------RIYTDAGRICRPLLIVENGSLLLKKTHVEMLKE 646
Query: 594 ESQN------------IELIGPFEQ-VFMEIRCPDGGDGGRRNAFPAT--HEEIHPTGML 638
N +E I E+ M P + A+ T H EIHP +L
Sbjct: 647 RDYNNYSWQVLVASGVVEYIDTLEEETVMIAMSPYDLKQDKDYAYCTTYTHCEIHPAMIL 706
Query: 639 SVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTY 698
V A++ P+ DHNQSPRN YQ M KQ MG + R D + L P P+V T +
Sbjct: 707 GVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPMKPLVTTRSM 766
Query: 699 TKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT-------ETID 751
E P G N+IVA+L YTGY+ ED++ILN S+V+RG Y++ D
Sbjct: 767 EYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDAENKRVGD 826
Query: 752 LSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKT------- 804
++ K RG RN L D DG+ G + + + KT
Sbjct: 827 QEENFEKPHRGTCQGMRNAHYDKL----DDDGIIAPGIRVSGDD---VVIGKTITLPEND 879
Query: 805 ----TNSWRTNSR------KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKF 854
+N+ R R + SE+ VD V + + NS+ + IR R R P IGDKF
Sbjct: 880 DELDSNTKRFAKRDASTFLRNSETGIVDQVMLTL-NSEGY-KFCKIRVRSVRIPQIGDKF 937
Query: 855 SSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
+SRHGQKG C + DMPF+ G+ PD+IINPHA PSRMTI L+E + K
Sbjct: 938 ASRHGQKGTCGIQYRQEDMPFT-CEGLAPDIIINPHAIPSRMTIGHLIECLQGK 990
>gi|323447819|gb|EGB03728.1| hypothetical protein AURANDRAFT_39265 [Aureococcus anophagefferens]
Length = 1222
Score = 234 bits (597), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 246/972 (25%), Positives = 404/972 (41%), Gaps = 177/972 (18%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR +Y+ + DV +Y V +R G+ P+ML++ +C L +L +LK
Sbjct: 93 CRLRDCTYSAPIFVDV--RYRRGPQIVTTKRVPIGRIPIMLRSSQCVLHNKSWSQLEALK 150
Query: 98 EEAAEMGGYFILNGLERVF---------RSVI-LPKQNYPMSMVRSSFRDRREGYTDKAV 147
E + GGYF++ G+E+V R +I L + + + + SS +R+
Sbjct: 151 ECPHDPGGYFVVKGVEKVILMQEQLSKNRMIIELDAKGFVCATITSSTHERKS------- 203
Query: 148 VIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTC 207
RC + + YL + ++ G + +PV ++LKA+ +D EI L
Sbjct: 204 --RCSIVVKPTTHGHRVYLKHNTL-------GDD--IPVVVILKAMGMESDQEI-AELVS 251
Query: 208 CYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQP-----VIDGL 262
D K + V+ + A V+ T+ Q L+++G+ + +DG
Sbjct: 252 SADLK-------IADIFVNSMEEPCAAHVK-----TQKQALEYVGQAIRAKQKAQSVDGS 299
Query: 263 QSE-------------------SYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSL 303
+S+ ++ ++ + DY FV K + + +++ +
Sbjct: 300 RSQYLPHSRRPVSIEDEAREVLAHVVLSHVPVEDYDFV------AKRTYIGHVTRRVLAA 353
Query: 304 VDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDW---LRKGKKLIQDEIENNGKKFDF 360
S+ D+ D N+ + L G L+++ ++ + + L++ L+ + +N FD
Sbjct: 354 SLDNSLLDDKDYYGNKRLELAGQLLSLLFEDLFKRFNADLKRSADLVLQK-QNRTAVFDI 412
Query: 361 FNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQT-GLDLQQRAGYTVQAERLNFLRFIS 419
+K + + + I + TG + +D RAG T RL+++ I
Sbjct: 413 -----VKSTVWR--TDTISQGFVHAISTGNWVLKRFKMD---RAGVTQVLSRLSYVSAIG 462
Query: 420 FFRAVHRGASFAGLRTTS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDS 478
V+ + F R TS R L WG LCP TP+GE CGL+ ++ V + +
Sbjct: 463 MMTRVN--SQFEKTRKTSGPRALQLSQWGMLCPADTPEGETCGLVKNLALLAHVTTDAEV 520
Query: 479 RGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVV 538
R + L L G + S P A L V L+G V+G K+
Sbjct: 521 EKTKRSCFDLGVEQLGYLNGAEL--------NSHPGAYL-VFLNGLVIGA--CRRPHKLA 569
Query: 539 AHLRRLKVSAASVIPDDLEVG-YVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN 597
LR ++ S +G +V + + +Y+ + RP+ +
Sbjct: 570 RGLRCMRRSK--------RIGEFVSVYTHTVHRAIYVACDGGRVCRPLIIATHGHSRLTA 621
Query: 598 IELIGPFEQVFMEIRCPDGGDGG--------------------------------RRNAF 625
+L F + + DG N F
Sbjct: 622 AQLATAFAKTYPNSNSQSKNDGDPNRLQSHASTQSVGTLDHLTTVGIIEYVDVNEENNCF 681
Query: 626 PA----------THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALK 675
A TH EI P +L +V+ L + HNQSPRN YQC M KQ MG
Sbjct: 682 IALDERELTPRHTHVEIDPVTILGIVSGLVAFPHHNQSPRNTYQCAMGKQAMGSVATNQY 741
Query: 676 FRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSV 735
R D LY L PQ P+V++ D P G NA +AV++Y+GYD+EDA++LN++S+
Sbjct: 742 ERMDSLLYSLVYPQKPMVKSRVLDLVHFDALPGGCNATLAVMSYSGYDIEDAIVLNRASL 801
Query: 736 DRGMCHGQIYQTETIDLSDDGN-KVDRGQ-----KLFRRNKDAKSLHSVIDSDGLPYVGQ 789
DRG + + + + N DR +LF + + +S +D+DG+ VG+
Sbjct: 802 DRGFMRCLVIKRHQVSIRRYANGACDRTTGPPSIELFLQGYVFR--YSALDNDGICRVGE 859
Query: 790 MIHPG------EPYCSIYDKTT-------NSWRTNSRKGSESVFVDYVAVDMKNSKNLPQ 836
+H E D+ T +++ K VD V + +
Sbjct: 860 KLHDQSIMINREMPVEDRDELTPALPGRVSAFVVLHYKSPAPSVVDRVLLTANETDQFLV 919
Query: 837 KANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRM 896
K + R R P +GDKF+SRHGQKGVC + DMPFS TG+ PD+I+NPH FPSRM
Sbjct: 920 K--VMVRQCRRPEVGDKFASRHGQKGVCGAIVSQEDMPFSD-TGVCPDVIMNPHGFPSRM 976
Query: 897 TIAMLLESVAAK 908
T+ ++E VA K
Sbjct: 977 TVGKIIELVAGK 988
>gi|302790720|ref|XP_002977127.1| hypothetical protein SELMODRAFT_443461 [Selaginella moellendorffii]
gi|300155103|gb|EFJ21736.1| hypothetical protein SELMODRAFT_443461 [Selaginella moellendorffii]
Length = 1386
Score = 234 bits (596), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 234/929 (25%), Positives = 396/929 (42%), Gaps = 142/929 (15%)
Query: 37 HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQ-------FPVMLKTRRCHLQGAD 89
CR ++Y+ + D+E+ G ++ + GQ PVML++ RC L G
Sbjct: 351 QCRLRDMTYSAPISVDIEYT---RGKDIITRKGKDGQGAQVIGRMPVMLRSSRCILTGKS 407
Query: 90 SQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVI 149
+L L E + GGYF++ G E+V +++ +Q ++ S D T
Sbjct: 408 DAELAKLGECPLDPGGYFVVKGTEKV---ILIQEQLSKNRIIIDS--DSTGSVTASVTSS 462
Query: 150 RCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY 209
RK ++++ +K + V+L + +P+ +V+KA+ +D EI +
Sbjct: 463 THERKSKTNIIIKHEKIY---VKLNVFSDD----VPIVVVMKAMGMESDQEIIQMVGT-- 513
Query: 210 DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYA 269
D K+ + +P + E L + T Q L+++G + ++
Sbjct: 514 DPKF----AGILAP--------SMQECASLGVYTTHQALEYLGTKVRVNRQWGSKQTKSK 561
Query: 270 VAET------VIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILL 323
V E V ++ VH D K + ML+++ + D+ D + N+ + L
Sbjct: 562 VDEARDILLNVFLAHVAVHRYDFRPKCIYVALMLRRMLEAILDKECVDDRDYVGNKRLEL 621
Query: 324 PGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIE 383
G L+ + ED ++ ++ ++ K + + ++ K ++ + + + +E
Sbjct: 622 AGQLLALL----FEDLFKRSCSELKSNVDRTLSKMNRASQYDVSKSLKPD---MLTSGLE 674
Query: 384 TMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLP 443
+ +G + + G T RL+++ + V + F R
Sbjct: 675 NAISSGNWTVKRF--RMDKKGVTQVVSRLSYIAALGHMTRV--ASQFEKSR--------- 721
Query: 444 ESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIP 503
WG LCP TP+GE CGL ++ + + D + D L +GV I
Sbjct: 722 -KWGMLCPCDTPEGEGCGLTKNLALMTHITT-DDEEAPLID--------LCTNLGVEDIN 771
Query: 504 SLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVG-YVP 562
L A L V+ +G ++G+ ++ +R+L+ + ++G +V
Sbjct: 772 LLSGEEFHSKNAFL-VMFNGTILGI--HRRPQQFATLMRKLRRAG--------KIGEFVS 820
Query: 563 LSLGGAYPGLYLFTSPPKFVRPV----RNISLPSEESQNIELIG--PFEQVFMEIRCPDG 616
+ + +Y+ + + RPV +S E G F+ E
Sbjct: 821 IFVNEKQRCIYIASDGGRVCRPVVIADHGVSRIKEHHMKELKDGFRTFDDFLREGLVEYL 880
Query: 617 GDGGRRNAFPATHE----------EIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQT 666
NA A +E EI P +L V A L PY HNQSPRN YQC M KQ
Sbjct: 881 DVNEENNALIALYEKEADSTTTHIEIEPFTILGVCAGLIPYPHHNQSPRNTYQCAMGKQA 940
Query: 667 MGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMED 726
MG R D LY L PQ P++ T + D+ G NA VAV++Y+GYD+ED
Sbjct: 941 MGNIAYNQLQRIDTLLYLLVYPQRPLLTTKSIELVNYDKLGAGQNASVAVMSYSGYDIED 1000
Query: 727 AMILNKSSVDRGM----------CHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLH 776
A+++NK+S+DRG C + Y+ T+D ++ + +
Sbjct: 1001 AIVMNKASLDRGFGRCIVLKKFSCLVRKYENRTMD------------RIVAPRQHGHATS 1048
Query: 777 SVIDSDGLPYVGQMIHPGEPYCSIYD----KTT---------NSWRTNSR--KG--SESV 819
++D DG+ VG+ I+ + + + KTT +++R + KG ES
Sbjct: 1049 QLLDQDGIASVGERIYDKDIFVNKESPKDVKTTFLNPLALPDSAYRPTPQRYKGPLGESA 1108
Query: 820 FVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVT 879
VD V + S+ + K + RHTR P +GDKFSSRHGQKGVC + D PF+
Sbjct: 1109 IVDKVLLTTNESQQMVIKCQV--RHTRRPELGDKFSSRHGQKGVCGTIVEQQDFPFTE-R 1165
Query: 880 GMRPDLIINPHAFPSRMTIAMLLESVAAK 908
G+ PDLI+NPH FPSRMT+ ++E + K
Sbjct: 1166 GVCPDLIMNPHGFPSRMTVGKMIELLGGK 1194
>gi|429329468|gb|AFZ81227.1| DNA-directed RNA polymerase II subunit, putative [Babesia equi]
Length = 1219
Score = 234 bits (596), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 244/939 (25%), Positives = 413/939 (43%), Gaps = 140/939 (14%)
Query: 39 RQAKISYTGKLMADVEFQ-YLD---AGSPVVRE-----RFNFGQFPVMLKTRRCHLQGAD 89
R ++Y ++ D+E + YL G+ +++ R G+ P+MLK+ C +G
Sbjct: 165 RLRNLTYASQIYVDIEQETYLKDETTGAETLQDKTTYPRIPLGRMPMMLKSTYCWTKGLS 224
Query: 90 SQKLVSLKEEAAEMGGYFILNGLERV----------FRSVILPKQNYPMSMVRSSFRDRR 139
+ L + E + GGYFI+NG ERV F V KQ S V + R +
Sbjct: 225 EEDLADVGECPYDQGGYFIVNGGERVLIAQERMANNFIYVFKKKQPSKYSFV-AEIRSQA 283
Query: 140 E---GYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDT 196
E G T +++++ S K + L ++ +L+ +PV I+ +AL
Sbjct: 284 EFSQGITPFSIMMKSSLGAPGS-RFKSHGQLVATIP---YLRAD---IPVPILFRALGCV 336
Query: 197 NDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLS-LTTRLQCLQHIGEHF 255
D +I + +++K + + ++ A +++ S T+ CL IG+
Sbjct: 337 ADRDILQRIVYDFEDK--------------QMLNLMRATLEEASDYVTQETCLDFIGKRG 382
Query: 256 QPVIDGLQSESYYAVAETVIRDYIFVHLN----DNNDKFNLLIFMLQKLFSLVDHTSVSD 311
V L++ YA + ++R ++ H+ K L +M+ +L D
Sbjct: 383 PTVGAPLETRIQYA--KDLLRQHLLPHVGTEPGSEGKKCYFLGYMIHRLLLSRLGRINED 440
Query: 312 NPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVME 371
+ + + + L G L+ + ++++Q +I + G+ FD +
Sbjct: 441 DREHFGKKRLDLAGPLMASSFGTLFRKMAKDARRILQQQI-DCGRAFDVAGAIRSATTIT 499
Query: 372 KNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFA 431
+ Q+ T + G++ R G + RL F ++S R ++
Sbjct: 500 QGLQYQLLTGNWGRDREGKIV---------RTGVSQVLNRLTFASYLSHLRRLNTPLGRE 550
Query: 432 GLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTS 491
G + R+L WG +CP TP+G+ GL+ ++ C Y S G++ +
Sbjct: 551 G-KMAKPRQLHNTHWGMICPAETPEGQAVGLVKNLALMC-----YISVGSVA------AT 598
Query: 492 ILRVLIGVGMIPSLPKLVKSGPPAVLS----VLLDGRVVGVIPSSE--IEKVVAHLRRLK 545
I L GM SL ++ PP V+ + ++G VG ++ + ++ RR
Sbjct: 599 INEFLSEWGM-DSLDEV----PPEVVKDRVKIFINGTWVGCFDEADSLVRTLLELRRRGD 653
Query: 546 VSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRP---VRNISLPSEESQNIELI- 601
+S+ + I D+ V + FT + +RP V N + + ++I +I
Sbjct: 654 ISSETSIVRDIVSQEVKI-----------FTDAGRAMRPLFIVENGNTLAINKEHIAMID 702
Query: 602 -------GPFEQVFME-IRCPDG---------GDGGRRNAFPAT--HEEIHPTGMLSVVA 642
G E +E I C + D N + +T H EIHP+ +L V A
Sbjct: 703 NNECNWDGLVESGVIEYIDCEEEEMCMIGMFVDDLKANNTYCSTYTHCEIHPSMILGVCA 762
Query: 643 NLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYG 702
++ P+ D NQSPRN YQ M KQ MG R D + L PQ P+V T +
Sbjct: 763 SIIPFPDQNQSPRNTYQSAMGKQAMGVYATNFNLRMDTLCHILYYPQKPLVCTRSMEFLR 822
Query: 703 IDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRG 762
E P G NAIVA++ YTGY+ ED++I+N+SS+DRG+ +T + G+ +
Sbjct: 823 FRELPAGINAIVAIMCYTGYNQEDSLIMNQSSIDRGLFRSAFNRTYISEEKYVGSTI--- 879
Query: 763 QKLFRRNKDAKSL------HSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSR--- 813
+ F R A L ++ +D+DGL G + + I +T+ + + R
Sbjct: 880 VERFERPGTANILGLKRGDYTKLDADGLVEPGSRVMGDD---IIIGRTSTADEEDMRQDC 936
Query: 814 ----KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWP 869
+ +E+ VD V V + N+K + A ++ R R P IGDKF+SRHGQKG +
Sbjct: 937 SCCLRANENGVVDTVLVSV-NAKGT-KFAKVKVRSVRVPQIGDKFASRHGQKGTIGITYR 994
Query: 870 DIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
D+PF+ G+ PD+I+NPHA PSRMTI L+E + K
Sbjct: 995 TEDLPFT-CEGIVPDIIMNPHAVPSRMTIGHLVECLIGK 1032
>gi|357120315|ref|XP_003561873.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like
[Brachypodium distachyon]
Length = 1228
Score = 234 bits (596), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 235/933 (25%), Positives = 395/933 (42%), Gaps = 116/933 (12%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPV--VRERFNF-----GQFPVMLKTRRCHLQGADS 90
R ++Y+ L DV ++ + G V E + G+ P+ML++ C L
Sbjct: 154 ARLRNLTYSAPLYVDVSYRVVKKGHDCEEVTETMEYPKVFIGKVPIMLRSSYCTLFQQSE 213
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
+ L L E + GGYF++NG E+V ++ ++ + V F+ R+ +R
Sbjct: 214 KDLTELGECPYDQGGYFVINGSEKV----LIAQEKMSTNHV-YVFKKRQPNKFAYVAEVR 268
Query: 151 CVRKDQSSVTLKLYYLL------NGSVRLGFWLQGKEYL---LPVGIVLKALVDTNDLEI 201
+ ++Q+ ++ + G + Y+ +P+ IV +AL D +I
Sbjct: 269 SMAENQNRPASSMFVRMLSRAGAKGGSSGQYIRATLPYIRADIPIIIVFRALGFVADKDI 328
Query: 202 FNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDG 261
H+ CYD + E ++ L E + + L +IG+ V G
Sbjct: 329 LEHI--CYD---------FSDTQMMELLRPSLEEA--FVIQNQQVALDYIGKRGATV--G 373
Query: 262 LQSESYYAVAETVIRDYIFVHLN----DNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQ 317
+ E A+ +++ + H+ K +++ +L D+ D
Sbjct: 374 VTREKRIKYAKEILQKEMLPHVGVGEFCETKKAYYFGYIIHRLLMCALGRRAEDDRDHYG 433
Query: 318 NQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQ 377
N+ + L G L+ + R + +Q + +NGK N++ ++ +K
Sbjct: 434 NKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCV-DNGKD------VNLQFAIK---AKT 483
Query: 378 IGTSIETMLKTGRL--ATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRT 435
I + ++ L TG A Q G RAG + RL + +S R ++ G +
Sbjct: 484 ITSGLKYSLATGNWGQANQAGT----RAGVSQVLNRLTYASTLSHLRRLNSPIGREG-KL 538
Query: 436 TSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRV 495
R+L WG +CP TP+G+ CGL+ ++ + IL
Sbjct: 539 AKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYIT-----------VGSAANPILEF 587
Query: 496 LIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK----VSAASV 551
L G + ++ + P + ++G VG+ + ++ +V LRRL+ V+
Sbjct: 588 LEEWG-TENFEEISPAVIPQAAKIFVNGCWVGIHRNPDL--LVKTLRRLRRQIDVNTEVG 644
Query: 552 IPDDLEVGYVPL--SLGGAYPGLYLFTS-----PPKFVRPVRNISLPSEESQN------I 598
+ D+ + + L G L++ K +R ++ P E + I
Sbjct: 645 VVRDIRLKELRLYTDYGRCSRPLFIVDGQRLLIKKKHIRALQQRETPDEGWHDLVAKGFI 704
Query: 599 ELIGPFEQ----VFMEIRCPDGGDGGRRNAFPAT--HEEIHPTGMLSVVANLTPYSDHNQ 652
E I E+ + M I + A+ T H EIHP+ +L V A++ P+ DHNQ
Sbjct: 705 EYIDTEEEETTMISMTINDLVSARNNPQEAYSETYTHCEIHPSLILGVCASIIPFPDHNQ 764
Query: 653 SPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNA 712
SPRN YQ M KQ MG V + R D Y L PQ P+V T + P G NA
Sbjct: 765 SPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINA 824
Query: 713 IVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKD- 771
IVA+ Y+GY+ ED++I+N+SS+DRG +++ + G V ++ R N++
Sbjct: 825 IVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVK--EEFGRPNREN 882
Query: 772 ----AKSLHSVIDSDGLPYVGQMIH------------PGEPYCSIYDKTTNSWRTNSRKG 815
+ +D DGL G + P + + + + S +
Sbjct: 883 TMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTSPIPQDDAQGQATRYSKRDHSTSLRH 942
Query: 816 SESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPF 875
SES VD V + N+ L + +R R R P IGDKFSSRHGQKG + DMP+
Sbjct: 943 SESGMVDQVLL-TTNADGL-RFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPW 1000
Query: 876 SGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
+ + G+ PD+I+NPHA PSRMTI L+E + K
Sbjct: 1001 T-IEGITPDIIVNPHAIPSRMTIGQLIECIMGK 1032
>gi|209879223|ref|XP_002141052.1| RNA polymerase beta subunit [Cryptosporidium muris RN66]
gi|209556658|gb|EEA06703.1| RNA polymerase beta subunit, putative [Cryptosporidium muris RN66]
Length = 1184
Score = 234 bits (596), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 232/924 (25%), Positives = 374/924 (40%), Gaps = 150/924 (16%)
Query: 68 RFNFGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERV----------FR 117
R + P+ML++ C ++L S E + GGYFI+NG+E+V F
Sbjct: 141 RLPLAKIPIMLRSEYCWTHNISERELQSAGECIYDQGGYFIINGMEKVLIGQERMANNFV 200
Query: 118 SVILPKQNYPMSMVRSSFRDRREGY-TDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFW 176
+ KQ + + + R REG ++ Q V L Y+
Sbjct: 201 YLFQKKQPSKYTWI-AEVRSNREGMQATSGFSVKLRGGSQGQVVATLPYIRTD------- 252
Query: 177 LQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEV 236
+P+ I+ +AL +D +I L C YD + A+ P + E + EV
Sbjct: 253 -------IPIAILFRALGVLSDKDIL--LRCVYDFS-DSQMLAILRPSLEETFEFSSQEV 302
Query: 237 QDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRD---YIFVHLNDNNDKFNLL 293
CL IG+ P + ++ + E + R+ ++ V + K +
Sbjct: 303 ----------CLDFIGKR-GPTVGAIREKRIQYARELLEREVLPHVGVTIGCEFRKAYFI 351
Query: 294 IFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIEN 353
+M+ +L D+ D + + L G L+ + ++ ++L+Q I +
Sbjct: 352 GYMVHRLCMGALGRVPEDDRDHFGKKRLDLAGPLVAASFGQSFRKMMKDMRRLLQRNI-D 410
Query: 354 NGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLN 413
NGK+FD + + + Q T + G++ R G RL
Sbjct: 411 NGKEFDVAGVIRSASYITQTLQYQFATGNWGKDRDGKIV---------RTGVAQVLSRLT 461
Query: 414 FLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVA 473
F +S+ R ++ G R+L WG +CP TP+G GL+ ++ C ++
Sbjct: 462 FASALSYLRRLNTPLGREGT-LAKPRQLHNTHWGMICPAETPEGHAVGLVKNLALMCEIS 520
Query: 474 SYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSE 533
Y R F+ +R + + S+ ++ + V L+G VG SE
Sbjct: 521 VGY------RPFA------IRTFLDEWGMDSIDEVPPEDIKDKIKVFLNGNWVGCFDDSE 568
Query: 534 IEKVVAHLRRLKVSAASVIPDDLEVGY-VPLSLGGAYPGLYLFTSPPKFVRPVRNISLPS 592
+ +LR ++ S E+ Y + L + LFT + +RP+ +
Sbjct: 569 --DSITNLRMIRRSG--------EIPYETSIVLDVVNREVKLFTDAGRSMRPLYIVGEDG 618
Query: 593 E----ESQNIELIG---------PFEQVFMEIRCPDGG---------------------- 617
E +S L+G ++ E+ P+GG
Sbjct: 619 ELKIRKSHIATLLGIKMPENNSNEDMKILSEVDLPEGGISRDSDFTWDDLIKSGIIEYID 678
Query: 618 ----------------DGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQ 661
R TH EIHP+ +L + A++ P+ DHNQSPRN+YQ
Sbjct: 679 CEEEETAMIAMFMNDLRDARGYCSTYTHCEIHPSLILGICASIIPFPDHNQSPRNVYQSA 738
Query: 662 MAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTG 721
M KQ MG R D Y L PQ P+V T T E P G N IV ++ Y+G
Sbjct: 739 MGKQAMGVYTSNYNVRMDTLGYVLYYPQKPLVTTRAMTYMRFRELPAGINCIVGIMCYSG 798
Query: 722 YDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKS-----LH 776
Y+ ED++I+N+SS+DRG+ ++T + G+ + +L N D S +
Sbjct: 799 YNQEDSLIMNQSSIDRGLFRSVFFRTYVSEEKQIGSNLIEAFEL--PNPDEVSGLRFGNY 856
Query: 777 SVIDSDGLPYVGQMIH------------PGEPYCSIYDKTTNSWRTNSRKGSESVFVDYV 824
+D DGL G + P E + ++ T + + SE VD V
Sbjct: 857 GNLDRDGLIEPGNRVLGDDIIIGKFGPIPPEERDNRIERLTKRDCSIGLRSSEHGVVDEV 916
Query: 825 AVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPD 884
+ NSK + + ++ R R P IGDKF+SRHGQKG + DMPF+ G+ PD
Sbjct: 917 LLS-TNSKGV-KFTKVKVRTIRVPHIGDKFASRHGQKGTIGITYRMEDMPFTQ-DGIVPD 973
Query: 885 LIINPHAFPSRMTIAMLLESVAAK 908
+I+NPHA PSRMTI L+E + K
Sbjct: 974 IIMNPHAIPSRMTIGHLIECILGK 997
>gi|70606496|ref|YP_255366.1| DNA-directed RNA polymerase subunit B [Sulfolobus acidocaldarius
DSM 639]
gi|449066708|ref|YP_007433790.1| DNA-directed RNA polymerase subunit B [Sulfolobus acidocaldarius
N8]
gi|449068982|ref|YP_007436063.1| DNA-directed RNA polymerase subunit B [Sulfolobus acidocaldarius
Ron12/I]
gi|73920765|sp|P11513.2|RPOB_SULAC RecName: Full=DNA-directed RNA polymerase subunit B
gi|68567144|gb|AAY80073.1| DNA directed RNA polymerase subunit B [Sulfolobus acidocaldarius
DSM 639]
gi|449035216|gb|AGE70642.1| DNA-directed RNA polymerase subunit B [Sulfolobus acidocaldarius
N8]
gi|449037490|gb|AGE72915.1| DNA-directed RNA polymerase subunit B [Sulfolobus acidocaldarius
Ron12/I]
Length = 1126
Score = 234 bits (596), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 228/900 (25%), Positives = 393/900 (43%), Gaps = 129/900 (14%)
Query: 61 GSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVI 120
G P+ G P+MLK+ KL+ + E+ + GGYFI+NG E+V I
Sbjct: 107 GEPI---EIYIGDLPIMLKSVADPTSNLPIDKLIEIGEDPKDPGGYFIVNGSEKV----I 159
Query: 121 LPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFW-LQG 179
+ +++ + V + T A V + V ++ L + ++++ F + G
Sbjct: 160 IAQEDLATNRVLVDYGKSGSNITHVAKVTSSAAGYRVQVMIE--RLKDSTIQISFATVPG 217
Query: 180 KEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDL 239
+ +P I+++AL D +I D + + E ++ + Q
Sbjct: 218 R---IPFAIIMRALGFVTDRDIV--YAVSLDPQIQNE--------------LLPSLEQAS 258
Query: 240 SLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLN----DNNDKFNLLIF 295
S+T+ + L IG V G + E+ AE VI Y HL D K L
Sbjct: 259 SITSAEEALDFIGNR---VAIGQKRENRIQKAEQVIDKYFLPHLGTSPEDRKKKGYYLAS 315
Query: 296 MLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQ--DEIEN 353
+ K+ L D+ D N+ + L G L T + + ++ K L+ ++ +
Sbjct: 316 AVNKILELYLGRREPDDKDHYANKRVRLAGDLFTSLFRVAFKAFV---KDLVYQLEKSKV 372
Query: 354 NGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLN 413
G++ L + E+ R A TG + R G + +R N
Sbjct: 373 RGRRLSLTALVRADIITERI----------------RHALATGNWVGGRTGVSQLLDRTN 416
Query: 414 FLRFISFFRAVHRGASFA-GLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRV 472
+L +S R V +S A G R L WG +CP TP+G GL+ ++ +V
Sbjct: 417 WLSMLSHLRRVV--SSLARGQPNFEARDLHGTQWGRMCPFETPEGPNSGLVKNLALLAQV 474
Query: 473 ASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPP---------AVLSVLLDG 523
+ + + + RV +G++ S+ +++ + V L+G
Sbjct: 475 SVGINE-----------SVVERVAYELGVV-SVEDVIRRISEQNEDVEKYMSWSKVYLNG 522
Query: 524 RVVGVIP-SSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFV 582
R++G E+ K + RR + D++ V Y+ +++ +
Sbjct: 523 RLLGYYEDGKELAKKIRESRR-----QGKLSDEVNVAYIATDYLNE---VHINCDAGRVR 574
Query: 583 RP--VRNISLPSEESQNIELIGPFEQVFME------IRCPDGGDGGRRNAFPA------- 627
RP + N P ++++I+ + E F + I D + NA+ A
Sbjct: 575 RPLIIVNNGTPLVDTEDIKKLKNGEITFDDLVKQGKIEFIDAEE--EENAYVALNPQDLT 632
Query: 628 ---THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYH 684
TH EI P+ +L ++A++ PY +HNQSPRN YQ MAKQ++G + R D + +
Sbjct: 633 PDHTHLEIWPSAILGIIASIIPYPEHNQSPRNTYQSAMAKQSLGLYASNYQIRTDTRAHL 692
Query: 685 LQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHG-- 742
L PQ P+V+T G ++ P G NAI+A+++YTGY+MED++I+NKSS++RGM
Sbjct: 693 LHYPQMPLVQTRMLGVIGYNDRPAGANAILAIMSYTGYNMEDSIIMNKSSIERGMYRSTF 752
Query: 743 -QIYQTETID----------LSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMI 791
++Y TE + + G K +G+ +R +D + ++ G + +
Sbjct: 753 FRLYSTEEVKYPGGQEDKIVTPEAGVKGYKGKDYYRLLEDNGVVSPEVEVKGGDVLIGKV 812
Query: 792 HPGEPYCSIYDKTTNSWRTNSR---KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNP 848
P + + + ++ + E+ VD V + N + +R R R P
Sbjct: 813 SPPRFLQEFKELSPEQAKRDTSIVTRHGENGIVDLVLITETLEGN--KLVKVRVRDLRIP 870
Query: 849 IIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
IGDKF++RHGQKGV L +DMP++ G+ PD+I+NPHA PSRMTI ++E++ K
Sbjct: 871 EIGDKFATRHGQKGVVGILIDQVDMPYTA-KGIVPDIILNPHALPSRMTIGQIMEAIGGK 929
>gi|440801047|gb|ELR22072.1| DNAdirected RNA polymerase, beta subunit [Acanthamoeba castellanii
str. Neff]
Length = 1196
Score = 234 bits (596), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 234/905 (25%), Positives = 389/905 (42%), Gaps = 129/905 (14%)
Query: 68 RFNFGQFPVMLKTRRCHLQGADSQK-LVSLKEEAAEMGGYFILNGLERVFRSVILPKQNY 126
R G+ P+ML++ C L GA S K L L E + GGYF++NG E+V ++ ++
Sbjct: 172 RVFIGKVPIMLRSNYCMLAGAPSDKDLTELGECPYDQGGYFVINGSEKV----LIAQEKM 227
Query: 127 PMSMVRSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGK-EYL-- 183
+ V + Y A + C+ + ++ S G L+ Y+
Sbjct: 228 SHNHVYVFKKQAPSKYAYVAEIRSCLETGSRPTSTMYVKMMQRSGSKGQTLKATIPYIRQ 287
Query: 184 -LPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLT 242
+P+ IV +AL D EI + +D K E + P + E I QD ++
Sbjct: 288 DIPIIIVFRALGFVADREILELIVYDFDNKDMME---MLRPSLEEAFVI-----QDQAVA 339
Query: 243 TRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDN----NDKFNLLIFMLQ 298
L +IG+ + G E A+ +++ + H+ + K +++
Sbjct: 340 -----LDYIGK--RGTTTGATREKRIKYAKEILQKEMLPHVGISQYCETKKAYFFGYIIH 392
Query: 299 KLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKF 358
+L D+ D N+ + L G L+ ++ + + + +Q + ++GK+F
Sbjct: 393 RLLLAAQGKRPLDDRDHYGNKRLDLAGPLLGTLFRQLFKKLNKDVRGYLQKCV-DSGKEF 451
Query: 359 DFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFI 418
+ +M SK I ++ L TG + + ++G + RL F +
Sbjct: 452 N---------LMMAVKSKTITNGLKYSLATGNWTSTRSVG--AKSGVSQVLNRLTFASTL 500
Query: 419 SFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDS 478
S R ++ G + R+L WG +CP TP+G+ CGL+ ++ + S +
Sbjct: 501 SHLRRLNTPIGREG-KLAKPRQLHNTHWGMICPAETPEGQACGLVKNLALMAYI-SVGSA 558
Query: 479 RGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGV--IPSSEIEK 536
I +F + ++ +L ++ S PA + ++G VG+ P ++
Sbjct: 559 SAPILEFLEEWST-----------ENLEEISPSNIPAATKIFVNGAWVGIHRQPDHLVQT 607
Query: 537 VVAHLRRLKVSA-ASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRP----------- 584
+ + R + VSA SV+ D E L L+T + RP
Sbjct: 608 LRSLRRCVDVSAEVSVVRDIRE------------QELRLYTDAGRCCRPLFIVDKQRLLL 655
Query: 585 ----VRNIS-LPSEESQN------------IELIGPFEQ----VFMEIRCPDGGDGGRRN 623
+R+I L +ES + +E I E+ + M I
Sbjct: 656 KKSDIRDIQKLQQDESLSEKGWSHLVSQGFVEYIDCEEEETVMIAMTIDDLKKSRSEEAY 715
Query: 624 AFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLY 683
++ TH EIHP+ +L + A++ P+ DHNQSPRN YQ M KQ MG + R D +
Sbjct: 716 SYTYTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVYTTNYQLRMDTLAH 775
Query: 684 HLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQ 743
L PQ P++ T++ + P+G N I+A+ Y+GY+ ED++++N+SSVDRG
Sbjct: 776 VLYYPQKPLITTHSMEHLHFRKLPSGQNGIIAIACYSGYNQEDSLVMNQSSVDRGFFRSV 835
Query: 744 IYQTETIDLSDDGNKVDRGQKLFRRNKDA--KSLHSVIDSDGLPYVGQMIHPGEPYCS-- 799
Y++ G + +K R + + I+ DGL I PG
Sbjct: 836 FYRSYVDSEKHMGQYDEEFEKPIREDTMGMRHGSYEKIEDDGL------IAPGTRVSGDD 889
Query: 800 -IYDKTT----NSWRTNSR-----------KGSESVFVDYVAVDMKNSKNLPQKANIRFR 843
I KTT N T ++ + SE+ +D V + NS + +R R
Sbjct: 890 IIIGKTTPVSPNEEDTRAQRFSKKDSSISVRSSETGIIDKVMLST-NSDGY-KFCKVRVR 947
Query: 844 HTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLE 903
R P IGDKFSSRHGQKG ++ DMPF+ + G+ PD+I+NPHA PSRMTI L+E
Sbjct: 948 SVRTPQIGDKFSSRHGQKGTVGIMYRQEDMPFN-IEGITPDIIVNPHAIPSRMTIGQLIE 1006
Query: 904 SVAAK 908
+ K
Sbjct: 1007 CLMGK 1011
>gi|341896020|gb|EGT51955.1| CBN-RPB-2 protein [Caenorhabditis brenneri]
Length = 1195
Score = 234 bits (596), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 242/933 (25%), Positives = 396/933 (42%), Gaps = 113/933 (12%)
Query: 34 MFDHCRQAKISYTGKLMADVEFQYLDAGSPV--VRERFNFGQFPVMLKTRRCHLQGADSQ 91
M + R ++Y L D+ S V V E+ G+ PVML++ C L +
Sbjct: 115 MPNEARLRNLTYASPLYVDITKVVTRDDSVVEKVYEKVFVGKVPVMLRSSYCMLSNMTDR 174
Query: 92 KLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRC 151
L L E + GGYF++NG E+V +I ++ ++ S +D + Y K C
Sbjct: 175 DLTELNECPLDPGGYFVINGSEKV---LIAQEKMATNTVYVFSMKDGK--YAFKTECRSC 229
Query: 152 VRKD-QSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLEI 201
+ + + T+ + L G G+ + +P+ IV +AL +D +I
Sbjct: 230 LENSSRPTSTMWVNMLARGGGGGKKTAMGQRIIGILPYIKQEIPIMIVFRALGFVSDRDI 289
Query: 202 FNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDG 261
H+ +++ P + E VK L E + + L IG + G
Sbjct: 290 LGHIIYDFED-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGA--RGAKPG 334
Query: 262 LQSESYYAVAETVIRDYIFVHL----NDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQ 317
+ E A +++ + H+ + K + +M+ +L D+ D +
Sbjct: 335 VTREQRIKYAREILQKELLPHVGVSEHCETKKAFFIGYMVHRLLLAALGRRELDDRDHIG 394
Query: 318 NQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQ 377
N+ + L G L+ + + L++ + Q I N D F L K +
Sbjct: 395 NKRLDLAGPLLAFLFRALFRNLLKEMRMTAQKYINKN----DDFALDVCVK------TST 444
Query: 378 IGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS 437
I + L TG Q Q RAG + RL + +S R + G +
Sbjct: 445 ITRGLAYSLATGNWGDQKKAH-QSRAGVSQVLNRLTYTATLSHLRRANSPIGREG-KLAK 502
Query: 438 VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLI 497
R+L WG +CP TP+G+ GL+ ++ Y S G++ + IL L
Sbjct: 503 PRQLHNTQWGMVCPAETPEGQAVGLVKNLALMA-----YISVGSLPE------PILEFLE 551
Query: 498 GVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAASV 551
M +L ++ S + ++G VG+ E ++++ L++L+ VS S+
Sbjct: 552 EWSM-ENLEEVSPSSISDATKIFVNGSWVGI--HREPDQLMTTLKKLRRQMDIIVSEVSM 608
Query: 552 IPD--DLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN------------ 597
+ D D E+ + G L + ++ L + N
Sbjct: 609 VRDIRDREI-RIYTDAGRVCRPLLIVEDQKLALKKTHIDQLKDVDEANKFSWSDLVGGGV 667
Query: 598 IELIGPFEQ--VFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPR 655
+ELI E+ + + D GG + TH EIHP +L V A++ P+ DHNQSPR
Sbjct: 668 VELIDSMEEETSMIAMMPEDLRTGGYCDTH--THCEIHPAMILGVCASIIPFPDHNQSPR 725
Query: 656 NMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVA 715
N YQ M KQ MG R D + L PQ P+V T + +E P G NAIVA
Sbjct: 726 NTYQSAMGKQAMGVYTTNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFNELPAGINAIVA 785
Query: 716 VLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAK-- 773
+L+Y+GY+ ED++I+N S++DRG+ Y++ ++ N + ++L + K
Sbjct: 786 ILSYSGYNQEDSVIMNNSAIDRGLFRSVFYRSYR---DNEANLDNANEELIEKPTREKCS 842
Query: 774 ----SLHSVIDSDGLPYVGQMIHPGE----PYCSIYDKTTNSWRTNSR----------KG 815
+L+ +D DG+ G + + ++ D + T + +
Sbjct: 843 GMRHALYDKLDEDGIISPGMRVSGDDVIIGKTVALPDIDDDLDATGKKYPKRDASTFLRS 902
Query: 816 SESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPF 875
SE+ VD V + + N N + IR R R P IGDKF+SRHGQKG ++ DMPF
Sbjct: 903 SETGIVDQVMLSLNNDGN--KFVKIRMRSVRLPQIGDKFASRHGQKGTMGIMYRQEDMPF 960
Query: 876 SGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
+ G+ PD+IINPHA PSRMTI L+E + K
Sbjct: 961 TA-EGLTPDIIINPHAVPSRMTIGHLIECLQGK 992
>gi|161899557|ref|XP_001713004.1| second-largest subunit of DNA-directed RNA polymerase I
[Bigelowiella natans]
gi|75756499|gb|ABA27392.1| second-largest subunit of DNA-directed RNA polymerase I
[Bigelowiella natans]
Length = 1137
Score = 233 bits (595), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 229/887 (25%), Positives = 396/887 (44%), Gaps = 110/887 (12%)
Query: 75 PVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSS 134
P+ML + RC++ + V L E+ GYF+ G +V R K+N+ + + S
Sbjct: 111 PMMLGSIRCNVHSQIITRNVQLSEKKVFKTGYFVSKGKSKVIRISNTIKKNHIFLIKKKS 170
Query: 135 FRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPV--GIVLKA 192
+ + ++I+ +K+ + K++ L+ S + F ++Y + + ++L +
Sbjct: 171 ---HKSNASKTYILIKISKKNSENFITKIF--LSRSKGIIFIFGSRDYDIEIFSEVLLCS 225
Query: 193 LVDTNDL--EIFN--HLTCCYDEKYKK---EKGAVGSPLVSERVKIILAEVQDLSLTTRL 245
++D L +I N H + Y+ + + ++ + S LV A++ L L ++
Sbjct: 226 ILDNKKLSGQISNENHYSNFYNGRICRHLLKQFYINSNLVQH------AQIVGLGLYSKF 279
Query: 246 QCLQHIGE--HFQPVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSL 303
++G+ + ++D ++ V IR+ HL ++++K N + L
Sbjct: 280 DYFNYVGKVINCSNLLDFF--SNFMEVGCHFIRNTFLGHLYNSSNKHN---YFRSIYLRL 334
Query: 304 VDHTSVSDNPDSLQ---NQEILLPGHLITIYL-KEKLEDWLRKGKKLIQDEIENNGKKF- 358
V++ D+ D+L N E +LPG + T+ L K + R KL +D I N K
Sbjct: 335 VENKIFKDSSDNLNLTINLEYILPGDVCTLALFKSAMTIIFRSSLKL-KDNINKNSMKNS 393
Query: 359 -----DFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGY----TVQA 409
DF++ NI +K+I + I+ ++ G L DL + Y +V
Sbjct: 394 TSFSKDFYSYTNI--------NKKIFSRIKIIISVGHLK-----DLVSHSSYENGNSVLL 440
Query: 410 ERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTST 469
E+ N + S F VHRG F + R + +S G+LCPV TPDG GL+NH++
Sbjct: 441 EKSNMSCYFSNFDLVHRGQYFKKSQNIYPRLVSLDSLGYLCPVQTPDGASSGLINHLSLL 500
Query: 470 CRVA---SYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVV 526
++ + D N I L+ + +P K+V + ++S L+ ++
Sbjct: 501 TAISIDCEFDDLNSNF--------FIQEFLLSINFLPIESKIVGTSFENLISAGLNNMLI 552
Query: 527 GVIPSSEIEKVVAHLRRLK----------------VSAASVIPDDLEVGYVPLSLGGAYP 570
G+ S + + + LK + D E Y S+ P
Sbjct: 553 GLFFHSLLNEKIRFYHFLKSIRLYDNGRNLFLNHSFENQKLKIFDTEAAYFTPSV----P 608
Query: 571 GLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHE 630
G + RP+R + L S S + E IG E + + ++ D + F TH+
Sbjct: 609 GNEMIQFYTNANRPLRLLKLYS--SCSFEFIGMNEFINLSVKWLDSFSSQK--FFDKTHQ 664
Query: 631 EIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQT 690
++ +LS A+L P+ +HNQSPRN+YQCQM+KQ +G ++ F D K+ L PQ
Sbjct: 665 DLGNIALLSFTASLIPFWNHNQSPRNIYQCQMSKQAIGAGLENSMFCQDTKVMFLYYPQK 724
Query: 691 PIVR--TNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTE 748
+ + T+ G+ P G N I+++ + + DMEDA +LNK S G+ H I +
Sbjct: 725 YLFKKFNRIITRRGL--LPYGNNIIISIGSNSQNDMEDACVLNKFSSQNGLFHTIILK-- 780
Query: 749 TIDLSDDGNKVDRGQKLFRRNKD----AKSLHSVIDSDGL-PYVGQMIHPGEPYCSIYDK 803
KV + L ++K+ K++ S+++S + V + H SI++
Sbjct: 781 ---------KVKQNNYLIEKDKEKIALTKNIRSLLNSLIINKSVRNLCHNRFILSSIFNY 831
Query: 804 TTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGV 863
T + + F + +K+ I TRN ++GDK +S HGQK V
Sbjct: 832 TKKNKVKVQEYNNFDQFTYFGKEKVKSKTRFKFSLEITKNITRNILVGDKLASLHGQKSV 891
Query: 864 CSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAKEE 910
S L D+PFS G+ P++ +NPH+FPSRMTI ML E K
Sbjct: 892 VSTLISREDLPFSFFDGIIPEVSLNPHSFPSRMTIGMLKEMALLKNS 938
>gi|308487676|ref|XP_003106033.1| CRE-RPB-2 protein [Caenorhabditis remanei]
gi|308254607|gb|EFO98559.1| CRE-RPB-2 protein [Caenorhabditis remanei]
Length = 1207
Score = 233 bits (595), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 241/931 (25%), Positives = 394/931 (42%), Gaps = 101/931 (10%)
Query: 34 MFDHCRQAKISYTGKLMADVE--FQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQ 91
M + R ++Y L D+ D+ + V E+ G+ PVML++ C L +
Sbjct: 123 MPNEARLRNLTYASPLYVDITKVVTRDDSVNEKVYEKVFVGKVPVMLRSSYCMLSNMTDR 182
Query: 92 KLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRC 151
L L E + GGYF++NG E+V +I ++ ++ S +D + Y K C
Sbjct: 183 DLTELNECPLDPGGYFVINGSEKV---LIAQEKMATNTVYVFSMKDGK--YAFKTECRSC 237
Query: 152 VRKD-QSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLEI 201
+ + + T+ + L G G+ + +P+ IV +AL +D +I
Sbjct: 238 LENSSRPTSTMWVNMLARGGGGGKKTAMGQRIIGILPYIKQEIPIMIVFRALGFVSDRDI 297
Query: 202 FNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDG 261
H+ +D+ P + E VK L E + + L IG + G
Sbjct: 298 LGHIIYDFDD-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGA--RGAKPG 342
Query: 262 LQSESYYAVAETVIRDYIFVHL----NDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQ 317
+ E A +++ + H+ + K + +M+ +L D+ D +
Sbjct: 343 VTREQRIKYAREILQKELLPHVGVSEHCETKKAFFIGYMVHRLLLAALGRRELDDRDHIG 402
Query: 318 NQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQ 377
N+ + L G L+ + + L++ K+I I+ + N + + +
Sbjct: 403 NKRLDLAGPLLAFLFRALFRNLLKE--KMITSCIQMRMTAQKYINKNDDFALDVCVKTST 460
Query: 378 IGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS 437
I + L TG Q Q RAG + RL + +S R + G +
Sbjct: 461 ITRGLAYSLATGNWGDQKKAH-QSRAGVSQVLNRLTYTATLSHLRRANSPIGREG-KLAK 518
Query: 438 VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLI 497
R+L WG +CP TP+G+ GL+ ++ Y S G++ + IL L
Sbjct: 519 PRQLHNTQWGMVCPAETPEGQAVGLVKNLALMA-----YISVGSLPE------PILEFLE 567
Query: 498 GVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAASV 551
M +L ++ S + ++G VG+ E ++++ L++L+ VS S+
Sbjct: 568 EWSM-ENLEEVSPSAIADATKIFVNGAWVGI--HREPDQLMTTLKKLRRQMDIIVSEVSM 624
Query: 552 IPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNI-SLPSEESQN------------I 598
+ D + + G L K R+I L + N +
Sbjct: 625 VRDIRDREIRIYTDAGRVCRPLLIVEDQKLALRKRHIDQLKDIDEANKYTWSDLVGGGVV 684
Query: 599 ELIGPFEQ-VFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNM 657
ELI E+ M P+ G TH EIHP +L V A++ P+ DHNQSPRN
Sbjct: 685 ELIDSMEEETSMIAMMPEDLRSGVY-CDTHTHCEIHPAMILGVCASIIPFPDHNQSPRNT 743
Query: 658 YQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVL 717
YQ M KQ MG R D + L PQ P+V T + +E P G NAIVA+L
Sbjct: 744 YQSAMGKQAMGVYTTNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFNELPAGINAIVAIL 803
Query: 718 AYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAK---- 773
+Y+GY+ ED++I+N S++DRG+ Y++ ++ N + ++L + K
Sbjct: 804 SYSGYNQEDSVIMNNSAIDRGLFRSVFYRSYR---DNEANLDNANEELIEKPTREKCSGM 860
Query: 774 --SLHSVIDSDGLPYVGQMIHPGEPYCS-------IYDKTTNSWRTNSR-------KGSE 817
SL+ +D DG+ G + + I D + + + + SE
Sbjct: 861 RHSLYDKLDEDGIISPGMRVSGDDVIIGKTVALPDIDDDLDATGKKYPKRDASTFLRSSE 920
Query: 818 SVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSG 877
+ VD V + + N N + IR R R P IGDKF+SRHGQKG ++ DMPF+
Sbjct: 921 TGIVDQVMLSLNNDGN--KFVKIRMRSVRLPQIGDKFASRHGQKGTMGIMYRQEDMPFTA 978
Query: 878 VTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
G+ PD+IINPHA PSRMTI L+E + K
Sbjct: 979 -EGLTPDIIINPHAVPSRMTIGHLIECLQGK 1008
>gi|227830880|ref|YP_002832660.1| DNA-directed RNA polymerase subunit B [Sulfolobus islandicus
L.S.2.15]
gi|227457328|gb|ACP36015.1| RNA polymerase Rpb2 domain 6 [Sulfolobus islandicus L.S.2.15]
Length = 1131
Score = 233 bits (595), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 232/889 (26%), Positives = 386/889 (43%), Gaps = 116/889 (13%)
Query: 67 ERFNFGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNY 126
E G P+MLK+ + KL+ + E+ + GGYFI+NG ERV I+ +++
Sbjct: 115 EEVYIGDLPIMLKSAIDPISQYTLDKLIEIGEDPKDPGGYFIVNGSERV----IVTQEDL 170
Query: 127 PMSMVRSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGF-WLQGKEYLLP 185
+ V T A +I + VT++ L +G+ + F + GK +P
Sbjct: 171 APNRVLVDTGKTGSNITHTAKIISSTAGYRVPVTIE--RLKDGTFHVSFPAVPGK---IP 225
Query: 186 VGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRL 245
I+++AL D +I D + + E P + + I A V D
Sbjct: 226 FVILMRALGILTDRDIV--YAVSLDPEIQNEL----FPSLEQASSI--ANVDD------- 270
Query: 246 QCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHL----NDNNDKFNLLIFMLQKLF 301
L IG V G + E+ A+ +I Y HL +D K L + + K+
Sbjct: 271 -ALDFIGSR---VAIGQKRENRIEKAQQIIDKYFLPHLGTSADDRRKKAYYLAYAISKVI 326
Query: 302 SLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFF 361
L D+ D N+ + L G L + + +++ ++ + G+K
Sbjct: 327 ELYLGRREPDDKDHYANKRLRLAGDLFASLFRVAFKAFVKDLTYQLEKS-KVRGRKLALK 385
Query: 362 NLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFF 421
L V E+ R A TG + R G + +R N+L +S
Sbjct: 386 ALVRPDIVTERI----------------RHALATGNWVGGRTGVSQLLDRTNWLSMLSHL 429
Query: 422 RAVHRGASFA-GLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRG 480
R V +S A G R L WG +CP TP+G GL+ ++ ++A + R
Sbjct: 430 RRVI--SSLARGQPNFEARDLHGTQWGRMCPFETPEGPNSGLVKNLALMAQIAVGINER- 486
Query: 481 NIRDFSKMRTSILRVLIGVGMIPS---LPKLVKSGPP-----AVLSVLLDGRVVGVI-PS 531
+ + L +G++P + ++ + G V+L+GR+VG
Sbjct: 487 ----------IVEKTLYEMGVVPVEEVIRRVTEGGEDQNEYLKWSKVILNGRLVGYYRDG 536
Query: 532 SEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISL- 590
E+ K + RR I D++ VG++ +++ + RP+ +S
Sbjct: 537 EELAKKIRERRR-----NGEISDEVNVGHIVTDFINE---VHVNCDSGRVRRPLIIVSNG 588
Query: 591 -PSEESQNIELIGP----FEQVFMEIRCPDGGDGGRRNAFPA----------THEEIHPT 635
P ++IE + F+ + + + NA+ A TH EI
Sbjct: 589 NPLVTREDIEKLDSGSITFDDLVRQGKIEYLDAEEEENAYVALEPSDLTPEHTHLEIWSP 648
Query: 636 GMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRT 695
+L + A++ PY +HNQSPRN YQ MAKQ +G + R D + + L PQ P+V+T
Sbjct: 649 AILGITASIIPYPEHNQSPRNTYQSAMAKQALGLYAANYQLRTDTRAHLLHYPQRPLVQT 708
Query: 696 NTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHG---QIYQTETID- 751
G P G NAI+AV+++TGY+MED++I+N+SSV+RGM ++Y TE +
Sbjct: 709 RALDIIGYTNRPAGNNAILAVISFTGYNMEDSIIMNRSSVERGMYRSTFFRLYSTEEVKY 768
Query: 752 ---------LSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYD 802
+ + G + +G++ +R +D + ++ G + + P +
Sbjct: 769 PGGQEDKIVMPEPGVRGYKGKEYYRLLEDNGVVSPEVEVKGGDVLIGKVSPPRFLQEFKE 828
Query: 803 KTTNSWRTNSR---KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHG 859
+ + ++ + E VD V + N + +R R R P IGDKF+SRHG
Sbjct: 829 LSPEQAKRDTSIVTRHGEMGIVDLVLITETAEGN--KLVKVRVRDLRVPSIGDKFASRHG 886
Query: 860 QKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
QKGV L P +DMP++ V G+ PD+I+NPHA PSRMT+ ++E +A K
Sbjct: 887 QKGVIGMLIPQVDMPYT-VKGVVPDIILNPHALPSRMTLGQIMEGIAGK 934
>gi|159041032|ref|YP_001540284.1| DNA-directed RNA polymerase subunit B [Caldivirga maquilingensis
IC-167]
gi|157919867|gb|ABW01294.1| RNA polymerase Rpb2 domain 6 [Caldivirga maquilingensis IC-167]
Length = 1131
Score = 233 bits (594), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 229/885 (25%), Positives = 404/885 (45%), Gaps = 115/885 (12%)
Query: 67 ERFNFGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNY 126
E G P+M+K++ C+L G Q +V E+ + GGYFI+NG ERV ++ +++
Sbjct: 130 ETVPLGDLPIMVKSKYCNLYGLKPQAIVKKLEDPNDPGGYFIINGSERV----VVSQEDL 185
Query: 127 PMSMVRSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPV 186
++ + +R +A +I +++V ++ Y +G + + + +P
Sbjct: 186 ALNKPIYDYDERGATRIPRAKIISMGPGYRTTVVVE--YHKDGVIYV--QIPKIPTRMPF 241
Query: 187 GIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQ 246
+V++AL D +I L +++ ++E L S + I +A D +
Sbjct: 242 PVVMRALGLEKDQDI--ALAVSDNDEIQREL------LASFEMAIQIAPTVD-------E 286
Query: 247 CLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLN---DNNDKFNLLIFMLQKLFSL 303
+IG ++ G E A + Y HL D+ + + I + Q + +
Sbjct: 287 ARDYIGRR---IVLGHPREIRIQRALEYLDKYFLPHLGTTPDDKVRLSKAIELGQAVAGV 343
Query: 304 VD---HTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDF 360
++ D+ D + N+ + L G L+ + + +QD K++
Sbjct: 344 IELYKGWRQPDDKDHMSNKRVRLVGDLLAQLFRSIF-------AQFVQDLRNQLEKQYSR 396
Query: 361 FNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISF 420
+ ++ ++ + I LK A TG + + G T +R N++ IS
Sbjct: 397 GKIPELRTIVRAD-------IISDRLKH---ALSTGNWVGGKTGVTQMLDRTNYVSTISH 446
Query: 421 FRAVHRGASFAGLRTT---SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYD 477
R V S RT R L P WG LC + TP+G+ CGL+ +M V D
Sbjct: 447 LRRVVSSLS----RTQPHFEARDLHPTQWGRLCAIETPEGQNCGLVKNMALMATVTVGVD 502
Query: 478 SRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGV--IPSSEIE 535
++LR + + ++ + +K +VLL+GR++G+ P + +
Sbjct: 503 EASV--------EAMLREMGVINVLDARRNEIKGA-----NVLLNGRLIGIHRDPQALVN 549
Query: 536 KVVAHLRRLKVSAASVIPDDLEVGYVPL-------SLGGAYPGLYLFTSPPKFVRPVRNI 588
+ RR ++ ++ VGY+ GG L S K +I
Sbjct: 550 AIREARRRGDING------EVNVGYIEKLNEVRVNCDGGRLRRPLLIISNGKLRLTKEHI 603
Query: 589 S-LPSEESQNIELIGPFEQVFMEIRCPDG-----GDGGRRNAFPATHEEIHPTGMLSVVA 642
L S E +L+ +++ + GD + TH EI P+ ML VA
Sbjct: 604 EKLRSGEWTWDDLVKNGIVEYLDADEEENAMVTIGDTKDVDLSKYTHMEIIPSIMLGAVA 663
Query: 643 NLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYG 702
++ PYS+HNQSPRN+Y+ MAKQ++GF ++R D + + L P+ P+V T G
Sbjct: 664 HIIPYSEHNQSPRNIYEAAMAKQSLGFPYSNYRYRIDSRGHLLLYPERPLVTTRGLELIG 723
Query: 703 IDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHG---QIYQTETIDLS-DDGNK 758
P+G NA++A++++ GY +EDA+++NK++++RGM + Y+TE + + ++
Sbjct: 724 YSMRPSGQNAVLALVSFMGYSIEDAVMINKAAIERGMFRSIFYRSYETEAMRYPMGENDR 783
Query: 759 VDRGQKLFRRNKDAKSLHSVIDSDGL-----------PYVGQMIHPGEPYCSIYD-KTTN 806
+ R + A++ ++ +D DG+ +G+ I P Y ++ + +
Sbjct: 784 ITIPPPTVRDYRGAEA-YAHLDEDGIVPPEVFVSSKEVLIGK-ISPPRFYSALAESQLAG 841
Query: 807 SWRTNS---RKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGV 863
W+ NS R+G + + VD V + S + ++ R R P +GDKF+SRHGQKGV
Sbjct: 842 EWKDNSITVRRGEKGI-VDQVLI--TESSEGFKLIKVKVRELRIPELGDKFASRHGQKGV 898
Query: 864 CSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
+ P DMPF+ G+ PD++INPHA PSRMTI LLE++A K
Sbjct: 899 VGMIVPMEDMPFTE-NGITPDVVINPHALPSRMTIGQLLEAIAGK 942
>gi|340344216|ref|ZP_08667348.1| DNA-directed RNA polymerase subunit beta [Candidatus
Nitrosoarchaeum koreensis MY1]
gi|339519357|gb|EGP93080.1| DNA-directed RNA polymerase subunit beta [Candidatus
Nitrosoarchaeum koreensis MY1]
Length = 1115
Score = 233 bits (594), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 253/982 (25%), Positives = 408/982 (41%), Gaps = 163/982 (16%)
Query: 15 LVRHHIESFDYMLDEGLSEMFDHCRQAKI--------------------------SYTGK 48
+ R H+ SFD L+ GL + + Q +I S T
Sbjct: 21 IARQHLNSFDEFLERGLQSIINEVGQIEIENAEYPYKIQLGKVKLQQPRMMELDGSITHI 80
Query: 49 LMADVEFQYLDAGSPVVRE------------RF-NFGQFPVMLKTRRCHLQGADSQKLVS 95
A+ + + +PV+ E RF + G PVM K+ C L +QKLV
Sbjct: 81 TPAEARLRNVSYSAPVMMEASVVEDGKILESRFVHIGDVPVMAKSNACILHNFSTQKLVE 140
Query: 96 LKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKD 155
E+ + GGYFI+NG ERV V L +Y +V RE V V
Sbjct: 141 HGEDPNDPGGYFIINGSERVI--VGLEDLSYNKIIVD------RESVGGNTVFKAKVYSS 192
Query: 156 QSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKK 215
KL ++ + + G +PV + +AL +D EI ++ DE +
Sbjct: 193 IVGYRAKLELVMKNDGLIVARIPGSPVDIPVVTLTRALGLESDREIAAAVSLV-DEIQNE 251
Query: 216 EKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVI 275
+G+ + D+ T + +I + P G+ E AET++
Sbjct: 252 LEGS-------------FEKAGDVP--TAKDAIVYISKRIAP---GMLEEFQIKRAETLL 293
Query: 276 RDYIFVHLN----DNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIY 331
+ HL + +K L KL L D+ D N+ I G ++
Sbjct: 294 DWGLLPHLGKHPENRKEKAQFLGEAACKLLELKLGWISPDDKDHYGNKVIKFAGQMLADL 353
Query: 332 LKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRL 391
+ + +R K ++E +G+K + +I + T +L
Sbjct: 354 FRTAFRNLVRDMKY----QLERSGQKRGI---------------NAVAAAIRPGIITDKL 394
Query: 392 --ATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT---SVRKLLPESW 446
A TG + R G T +R N+L IS R + S RT R L +
Sbjct: 395 NNAIATGNWGRGRVGVTQLLDRTNYLSTISHLRRIQSPLS----RTQPNFEARDLHATHF 450
Query: 447 GFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLP 506
G +CP TP+G CGL+ ++ + ++ S + + T + +
Sbjct: 451 GRICPSETPEGSNCGLVKNLALSGIISVNVPSEEIVEKLYDLGT--------IHFFDAKE 502
Query: 507 KLVKSGPPAVLSVLLDGRVVGVIP-SSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSL 565
+ K G + +DGR++G +E+ + + LRR S I + + + ++
Sbjct: 503 DVKKDGA----RIFVDGRLIGYYKDGAELAESLRELRR-----NSKIHPHVGISFHQSAI 553
Query: 566 GGAYPGLYLFTSPPKFVRPV---------------RNISLPSEESQNIELIGPFEQVFM- 609
G+ LY+ + + +RP+ IS ++ +G E +
Sbjct: 554 EGSTKRLYVNCNAGRVLRPLIIIKDNKPLLTQDLLDKISKKLLSWTDLLRMGVLEMIDAN 613
Query: 610 -EIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMG 668
E C D +++ TH E+ P +L A++ PY +HNQSPRN Y+ MAKQ++G
Sbjct: 614 EEENCYITLD--EKDSKKHTHLEVFPPAILGAGASIIPYPEHNQSPRNTYESAMAKQSLG 671
Query: 669 FSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAM 728
FS + + + + PQTPIV T G+++ P G N +VAVL + GY++EDA+
Sbjct: 672 FSTPMMNTSTYVRQHLMLYPQTPIVNTKAMKLLGLEDRPAGQNCVVAVLPFDGYNIEDAI 731
Query: 729 ILNKSSVDRGMCHG---QIYQTETIDLSD---DGNKVDRGQKLFRRNKDAKSLHSVIDSD 782
+L++SSVDRG+ +IY E D ++ + R K K+ + +++ D
Sbjct: 732 VLSRSSVDRGLGRTFFFRIYDAEAKQYPGGMRDAFEIPNAEDNIRGYKGEKA-YRLLEED 790
Query: 783 GLPYVGQMIHPG-------------EPYCSIYDKTTNSWRTNSRKG---SESVFVDYVAV 826
G+ +H G E Y +++ +R ++ G SE+ VD V +
Sbjct: 791 GVVASESPVHGGDILIGKTSPPRFMEEYREF--ESSGPYRRDTSIGVRPSETGVVDTVVM 848
Query: 827 DMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLI 886
N K IR R R P IGDKF+SRHGQKGV L D+P++ G+ PD++
Sbjct: 849 TQSNEGGKMYK--IRVRDMRIPEIGDKFASRHGQKGVLGILAKAEDLPYTA-DGISPDVL 905
Query: 887 INPHAFPSRMTIAMLLESVAAK 908
INPHAFPSRMT+ M +ES+ K
Sbjct: 906 INPHAFPSRMTVGMFMESICGK 927
>gi|387592536|gb|EIJ87560.1| RNA polymerase [Nematocida parisii ERTm3]
gi|387595162|gb|EIJ92787.1| RNA polymerase [Nematocida parisii ERTm1]
Length = 1089
Score = 233 bits (594), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 240/927 (25%), Positives = 391/927 (42%), Gaps = 167/927 (18%)
Query: 36 DHCRQAKISYTGKLMADVEFQYLDAGSPVVRER-FNFGQFPVMLKTRRCHLQ-------- 86
+ CR ++Y+G ++ DVE+ G ++ R G+ P+ML +R Q
Sbjct: 93 EECRIRNMTYSGDIVVDVEYTR---GKDIISSRNVVVGKMPIMLGSRLSLRQKEFMENQV 149
Query: 87 GADSQKLVSL---------KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRD 137
G D+ + + E ++GGYFI G+ERV ++ + ++ + FR
Sbjct: 150 GIDTSNMQRITNPMYTRPKNECPYDIGGYFICKGVERVL--LMQEQLAKNRILIETDFRG 207
Query: 138 RREGYTDKAVVIRCV---RKDQSSVTLK--LYYLLNGSVRLGFWLQGKEYLLPVGIVLKA 192
D V+ RK ++ V +K L YL + S+ +P+ IV+K
Sbjct: 208 ------DLCAVVTSSSLERKSKTKVVMKKKLLYLSHNSLTED---------IPLNIVMKG 252
Query: 193 LVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIG 252
+ T DLEI +G P+ S +A ++ T L+ L IG
Sbjct: 253 MGVTTDLEI---------------DILIGQPVQS------IAHIR-----TELEALAWIG 286
Query: 253 EHFQPVIDGLQSESYYAVAETVIRDYIFVHL----NDNNDKFNLLIFMLQKLFSLVDHTS 308
+ G+ A ++ D I H+ D K L M + L + +
Sbjct: 287 SRIKTRSGGIDE------ARLLLCDIILAHIPGTGTDMRRKAEYLSVMARMLIDTANGNT 340
Query: 309 --VSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEI--ENNGKKFDFFNLA 364
+ ++ D + N+ I L G ++++ ++ L+ + KK + + ++ D +
Sbjct: 341 DTLQNDKDFVGNKRIELTGQMLSLLFEDLLKRLNTEIKKALDRVLCKRARAQELDALHFL 400
Query: 365 NIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAV 424
+ + M I T + + TG + + +RAG T RL+ L I V
Sbjct: 401 VMNRGM-------ITTGLLRAISTGSWSLKRFR--MERAGITQVLTRLSRLSAIGMCSRV 451
Query: 425 HRGASFAGLRTTS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIR 483
+ F R S R L WG CP TP+GE CGL+ + + I
Sbjct: 452 S--SQFEKTRKVSGPRALHCSQWGVFCPADTPEGEACGLVKSLAMLTEITPAESEESVIS 509
Query: 484 DFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRR 543
S + + V+ S + KS ++G ++G+ S+ ++ LR+
Sbjct: 510 ALSFLGIEDISVI-------STGDMEKSK-----KCWVNGVIIGI--CSDPARMACELRK 555
Query: 544 LKVSAASVIPDDLEVGYVPLSLG-GAYPGLYLFTSPPKFVRPVRNI--SLPSEESQNIEL 600
++ + G +P ++G L++ T + RP+ + P +I L
Sbjct: 556 VRRN-----------GSIPSTVGIWVNNDLFISTETGRLTRPLIIVEDGEPKLTQTHIRL 604
Query: 601 IGPFEQVFME------IRCPDGGDGGRRNAFPA----------THEEIHPTGMLSVVANL 644
+ + + I C D + +N+ A TH EI P +L VA +
Sbjct: 605 LKEGYKTVNDLLREGLIECIDQNEA--KNSLIAVWRTEITQDTTHLEIDPAAILGYVAGV 662
Query: 645 TPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGID 704
PY HNQSPRN YQC M KQ +G + + R D + + PQ P+ T +
Sbjct: 663 IPYPHHNQSPRNTYQCAMGKQGVGVTGVDQRRRMDGANFFMVNPQRPLAATRGMEIIKYN 722
Query: 705 EYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSD-DGNKVDRGQ 763
E P G N +AV++ +GYD+EDA+ILNK+S+DRG+ +++T + L G D
Sbjct: 723 ELPAGQNLTIAVMSMSGYDIEDALILNKASIDRGIGRALLFKTHALSLRTYPGGAAD--- 779
Query: 764 KLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTT--NSWRTNSRKGSESVFV 821
I DG+P G + G + D+ T S +G +S +
Sbjct: 780 --------------TIVGDGIPSPGMKVQEG---ITFIDRRTPMGSKAGAVYRGLDSASI 822
Query: 822 DYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGM 881
D A+ M+ +L + H R P IGDKFSSRHGQKGV + P DMPF+ + G+
Sbjct: 823 DKTAI-MRTGDDLITIKAVVKEH-RIPRIGDKFSSRHGQKGVVGLILPQEDMPFNEM-GI 879
Query: 882 RPDLIINPHAFPSRMTIAMLLESVAAK 908
PDL++NPH FPSRMT+ +LE V K
Sbjct: 880 SPDLVMNPHGFPSRMTVGKILELVTGK 906
>gi|229579766|ref|YP_002838165.1| DNA-directed RNA polymerase subunit B [Sulfolobus islandicus
Y.G.57.14]
gi|229581565|ref|YP_002839964.1| DNA-directed RNA polymerase subunit B [Sulfolobus islandicus
Y.N.15.51]
gi|228010481|gb|ACP46243.1| RNA polymerase Rpb2 domain 6 [Sulfolobus islandicus Y.G.57.14]
gi|228012281|gb|ACP48042.1| RNA polymerase Rpb2 domain 6 [Sulfolobus islandicus Y.N.15.51]
Length = 1131
Score = 233 bits (594), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 232/889 (26%), Positives = 386/889 (43%), Gaps = 116/889 (13%)
Query: 67 ERFNFGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNY 126
E G P+MLK+ + KL+ + E+ + GGYFI+NG ERV I+ +++
Sbjct: 115 EEVYIGDLPIMLKSAIDPISQYTLDKLIEIGEDPKDPGGYFIVNGSERV----IVTQEDL 170
Query: 127 PMSMVRSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGF-WLQGKEYLLP 185
+ V T A +I + VT++ L +G+ + F + GK +P
Sbjct: 171 APNRVLVDTGKTGSNITHTAKIISSTAGYRVPVTIE--RLKDGTFHVSFPAVPGK---IP 225
Query: 186 VGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRL 245
I+++AL D +I D + + E P + + I A V D
Sbjct: 226 FVILMRALGILTDRDIV--YAVSLDPEIQNEL----FPSLEQASSI--ANVDD------- 270
Query: 246 QCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHL----NDNNDKFNLLIFMLQKLF 301
L IG V G + E+ A+ +I Y HL +D K L + + K+
Sbjct: 271 -ALDFIGSR---VAIGQKRENRIEKAQQIIDKYFLPHLGTSADDRRKKAYYLAYAISKVI 326
Query: 302 SLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFF 361
L D+ D N+ + L G L + + +++ ++ + G+K
Sbjct: 327 ELYLGRREPDDKDHYANKRLRLAGDLFASLFRVAFKAFVKDLTYQLEKS-KVRGRKLALK 385
Query: 362 NLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFF 421
L V E+ R A TG + R G + +R N+L +S
Sbjct: 386 ALVRPDIVTERI----------------RHALATGNWVGGRTGVSQLLDRTNWLSMLSHL 429
Query: 422 RAVHRGASFA-GLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRG 480
R V +S A G R L WG +CP TP+G GL+ ++ ++A + R
Sbjct: 430 RRVI--SSLARGQPNFEARDLHGTQWGRMCPFETPEGPNSGLVKNLALMAQIAVGINER- 486
Query: 481 NIRDFSKMRTSILRVLIGVGMIPS---LPKLVKSGPP-----AVLSVLLDGRVVGVI-PS 531
+ + L +G++P + ++ + G V+L+GR+VG
Sbjct: 487 ----------IVEKTLYEMGVVPVEEVIRRVTEGGEDQNEYLKWSKVILNGRLVGYYRDG 536
Query: 532 SEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISL- 590
E+ K + RR I D++ VG++ +++ + RP+ +S
Sbjct: 537 EELAKKIRERRR-----NGEISDEVNVGHIVTDFINE---VHVNCDSGRVRRPLIIVSNG 588
Query: 591 -PSEESQNIELIGP----FEQVFMEIRCPDGGDGGRRNAFPA----------THEEIHPT 635
P ++IE + F+ + + + NA+ A TH EI
Sbjct: 589 NPLVTREDIEKLDSGSITFDDLVRQGKIEYLDAEEEENAYVALEPSDLTPEHTHLEIWSP 648
Query: 636 GMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRT 695
+L + A++ PY +HNQSPRN YQ MAKQ +G + R D + + L PQ P+V+T
Sbjct: 649 AILGITASIIPYPEHNQSPRNTYQSAMAKQALGLYAANYQLRTDTRAHLLHYPQRPLVQT 708
Query: 696 NTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHG---QIYQTETID- 751
G P G NAI+AV+++TGY+MED++I+N+SSV+RGM ++Y TE +
Sbjct: 709 RALDIIGYTNRPAGNNAILAVISFTGYNMEDSIIMNRSSVERGMYRSTFFRLYSTEEVKY 768
Query: 752 ---------LSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYD 802
+ + G + +G++ +R +D + ++ G + + P +
Sbjct: 769 PGGQEDKIVMPEPGVRGYKGKEYYRLLEDNGVVSPEVEVKGGDVLIGKVSPPRFLQEFKE 828
Query: 803 KTTNSWRTNSR---KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHG 859
+ + ++ + E VD V + N + +R R R P IGDKF+SRHG
Sbjct: 829 LSPEQAKRDTSIVTRHGEMGIVDLVLITETAEGN--KLVKVRVRDLRVPSIGDKFASRHG 886
Query: 860 QKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
QKGV L P +DMP++ V G+ PD+I+NPHA PSRMT+ ++E +A K
Sbjct: 887 QKGVIGMLIPQVDMPYT-VKGVVPDVILNPHALPSRMTLGQIMEGIAGK 934
>gi|294874302|ref|XP_002766888.1| RNA polymerase beta subunit, putative [Perkinsus marinus ATCC
50983]
gi|239868263|gb|EEQ99605.1| RNA polymerase beta subunit, putative [Perkinsus marinus ATCC
50983]
Length = 1171
Score = 233 bits (593), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 227/893 (25%), Positives = 389/893 (43%), Gaps = 101/893 (11%)
Query: 71 FGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSM 130
G+ P+MLK+ C L+ + LV + E + GGYFI+NG E+V ++ N+
Sbjct: 139 IGRIPMMLKSEYCWLKNQTERGLVEMGECVFDQGGYFIINGSEKVLIAMERMANNFVYC- 197
Query: 131 VRSSFRDRREGYTDKAVVIRCVRK---DQSSVTLKLYYLLNG-SVRLGFWLQGKEYL--- 183
F+ ++ IR + S ++K+ L G S G + Y+
Sbjct: 198 ----FQKKQPAKYTWICEIRSQAEGMLSTSGFSVKMLANLGGRSAARGQIVCSMPYINAD 253
Query: 184 LPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTT 243
+PV I+ +AL +D E+ + + + + + P + E + I+ EV
Sbjct: 254 IPVVILFRALGCVSDREVIERIVYDFSDT---QMMFLLRPSIEEAMPIMSQEV------- 303
Query: 244 RLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQK 299
L I + P I G A+ +++ + HL K + +M+ +
Sbjct: 304 ---ALDFIAKR-GPTI-GTSKSGRIQYAKELLQKELLPHLGVKQYCEPRKAYFIGYMVHR 358
Query: 300 LFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFD 359
L D+ D + + + G L+ + ++ K+++Q ++++ G+ FD
Sbjct: 359 LLLGQLGRIAEDDRDHFGKKRMDMAGPLMAASFAQLFRKLVQDSKRILQRQVDS-GRHFD 417
Query: 360 FFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFIS 419
+ + Q+ T + K+G+ R G + RL F+ +S
Sbjct: 418 LNSAIRSASSITDGLRYQLATGNWGIDKSGKSV---------RTGVSQVLNRLTFMSTMS 468
Query: 420 FFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSR 479
R ++ +G + R+L WG +CP TP+G+ GL+ ++ C + +
Sbjct: 469 HLRRMNTPLERSG-KLAKPRQLHNTHWGMICPAETPEGQAVGLVKNIALMCTI-----TV 522
Query: 480 GNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGV-IPSSEIEKVV 538
G++ +++ + + +L ++ S + V L+G+ VG+ ++ + + +
Sbjct: 523 GSL-------PNVVYDFLNEWGLENLDEINPSQIKHMTKVFLNGQWVGMHADATMLCETL 575
Query: 539 AHLRRLK-VSAASVIPDDLEVGYVPLSLGG--AYPGLYLFTSPP--------KFVRPVRN 587
LRR + + I DL+ + + G A LY+ PP + V +R
Sbjct: 576 RDLRRKRDIDPEVSIIRDLQANELRIFTDGGRACRPLYVVQPPPSQKLCIKREHVEALRR 635
Query: 588 ISLPSE--------ESQNIELIGPFEQ--VFMEIRCPDGGDGGRRNAFPA------THEE 631
+ L +E E +E I E+ + + D + RR + + TH E
Sbjct: 636 MLLNNEHGGWDMLVEEGLVEYIDAEEEETCMVAMFVDDLRNAQRRKSKASSYCHTYTHCE 695
Query: 632 IHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTP 691
IHP+ +L V A++ P+ DHNQSPRN YQ M KQ MG R D + L PQ P
Sbjct: 696 IHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYATNFNMRIDTMAHVLNYPQKP 755
Query: 692 IVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETID 751
+V T E P G NAIVA++ Y+GY+ ED++I+N SS+DRG +++ D
Sbjct: 756 LVGTRAMEYLRFRELPAGNNAIVAIMTYSGYNQEDSLIMNASSIDRGFMRSVHFKSYMAD 815
Query: 752 LSDDGNKVD---RGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGE-------PYCSIY 801
G +V R + + +S +D+DGL G +H + P +
Sbjct: 816 EKRQGAQVVEEFRAPSWSKTYAMKRGDYSKLDNDGLINPGTRVHGDDILIGKVSPIPNQT 875
Query: 802 DKTTNSWRTNSR------KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFS 855
D+ + R KG+++ VD V + + + + IR R R P IGDKF+
Sbjct: 876 DEEGRIQKYTERDCSVALKGADNGVVDQVMLSVNARGH--KFTKIRVRTLRVPTIGDKFA 933
Query: 856 SRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
SRHGQKG + DMPF+ G+ PD+I+NPHA PSRMTI L+E + K
Sbjct: 934 SRHGQKGTMGISYRQEDMPFTQF-GVVPDIIMNPHAVPSRMTIGHLVECLLGK 985
>gi|227828173|ref|YP_002829953.1| DNA-directed RNA polymerase subunit B [Sulfolobus islandicus
M.14.25]
gi|229585402|ref|YP_002843904.1| DNA-directed RNA polymerase subunit B [Sulfolobus islandicus
M.16.27]
gi|238620363|ref|YP_002915189.1| DNA-directed RNA polymerase subunit B [Sulfolobus islandicus
M.16.4]
gi|385773843|ref|YP_005646410.1| RNA polymerase Rpb2 domain 6 [Sulfolobus islandicus HVE10/4]
gi|385776478|ref|YP_005649046.1| RNA polymerase Rpb2 domain 6 [Sulfolobus islandicus REY15A]
gi|227459969|gb|ACP38655.1| RNA polymerase Rpb2 domain 6 [Sulfolobus islandicus M.14.25]
gi|228020452|gb|ACP55859.1| RNA polymerase Rpb2 domain 6 [Sulfolobus islandicus M.16.27]
gi|238381433|gb|ACR42521.1| RNA polymerase Rpb2 domain 6 [Sulfolobus islandicus M.16.4]
gi|323475226|gb|ADX85832.1| RNA polymerase Rpb2 domain 6 [Sulfolobus islandicus REY15A]
gi|323477958|gb|ADX83196.1| RNA polymerase Rpb2 domain 6 [Sulfolobus islandicus HVE10/4]
Length = 1131
Score = 233 bits (593), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 232/889 (26%), Positives = 386/889 (43%), Gaps = 116/889 (13%)
Query: 67 ERFNFGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNY 126
E G P+MLK+ + KL+ + E+ + GGYFI+NG ERV I+ +++
Sbjct: 115 EEVYIGDLPIMLKSAIDPISQYTLDKLIEIGEDPKDPGGYFIVNGSERV----IVTQEDL 170
Query: 127 PMSMVRSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGF-WLQGKEYLLP 185
+ V T A +I + VT++ L +G+ + F + GK +P
Sbjct: 171 APNRVLVDTGKTGSNITHTAKIISSTAGYRVPVTIE--RLKDGTFHVSFPAVPGK---IP 225
Query: 186 VGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRL 245
I+++AL D +I D + + E P + + I A V D
Sbjct: 226 FVILMRALGILTDRDIV--YAVSLDPEIQNEL----FPSLEQASSI--ANVDD------- 270
Query: 246 QCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHL----NDNNDKFNLLIFMLQKLF 301
L IG V G + E+ A+ +I Y HL +D K L + + K+
Sbjct: 271 -ALDFIGSR---VAIGQKRENRIEKAQQIIDKYFLPHLGTSADDRRKKAYYLAYAISKVI 326
Query: 302 SLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFF 361
L D+ D N+ + L G L + + +++ ++ + G+K
Sbjct: 327 ELYLGRREPDDKDHYANKRLRLAGDLFASLFRVAFKAFVKDLTYQLEKS-KVRGRKLALK 385
Query: 362 NLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFF 421
L V E+ R A TG + R G + +R N+L +S
Sbjct: 386 ALVRPDIVTERI----------------RHALATGNWVGGRTGVSQLLDRTNWLSMLSHL 429
Query: 422 RAVHRGASFA-GLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRG 480
R V +S A G R L WG +CP TP+G GL+ ++ ++A + R
Sbjct: 430 RRVI--SSLARGQPNFEARDLHGTQWGRMCPFETPEGPNSGLVKNLALMAQIAVGINER- 486
Query: 481 NIRDFSKMRTSILRVLIGVGMIPS---LPKLVKSGPP-----AVLSVLLDGRVVGVI-PS 531
+ + L +G++P + ++ + G V+L+GR+VG
Sbjct: 487 ----------IVEKTLYEMGVVPVEEVIRRVTEGGEDQNEYLKWSKVILNGRLVGYYRDG 536
Query: 532 SEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISL- 590
E+ K + RR I D++ VG++ +++ + RP+ +S
Sbjct: 537 EELAKKIRERRR-----NGEISDEVNVGHIVTDFINE---VHVNCDSGRVRRPLIIVSNG 588
Query: 591 -PSEESQNIELIGP----FEQVFMEIRCPDGGDGGRRNAFPA----------THEEIHPT 635
P ++IE + F+ + + + NA+ A TH EI
Sbjct: 589 NPLVTREDIEKLDSGSITFDDLVRQGKIEYLDAEEEENAYVALEPSDLTPEHTHLEIWSP 648
Query: 636 GMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRT 695
+L + A++ PY +HNQSPRN YQ MAKQ +G + R D + + L PQ P+V+T
Sbjct: 649 AILGITASIIPYPEHNQSPRNTYQSAMAKQALGLYAANYQLRTDTRAHLLHYPQRPLVQT 708
Query: 696 NTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHG---QIYQTETID- 751
G P G NAI+AV+++TGY+MED++I+N+SSV+RGM ++Y TE +
Sbjct: 709 RALDIIGYTNRPAGNNAILAVISFTGYNMEDSIIMNRSSVERGMYRSTFFRLYSTEEVKY 768
Query: 752 ---------LSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYD 802
+ + G + +G++ +R +D + ++ G + + P +
Sbjct: 769 PGGQEDKIVMPEPGVRGYKGKEYYRLLEDNGVVSPEVEVKGGDVLIGKVSPPRFLQEFKE 828
Query: 803 KTTNSWRTNSR---KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHG 859
+ + ++ + E VD V + N + +R R R P IGDKF+SRHG
Sbjct: 829 LSPEQAKRDTSIVTRHGEMGIVDLVLITETAEGN--KLVKVRVRDLRIPSIGDKFASRHG 886
Query: 860 QKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
QKGV L P +DMP++ V G+ PD+I+NPHA PSRMT+ ++E +A K
Sbjct: 887 QKGVIGMLIPQVDMPYT-VKGVVPDVILNPHALPSRMTLGQIMEGIAGK 934
>gi|194900689|ref|XP_001979888.1| GG16840 [Drosophila erecta]
gi|190651591|gb|EDV48846.1| GG16840 [Drosophila erecta]
Length = 1176
Score = 233 bits (593), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 252/954 (26%), Positives = 407/954 (42%), Gaps = 152/954 (15%)
Query: 34 MFDHCRQAKISYTGKLMADV-EFQYLDAGSPV--VRERFNFGQFPVMLKTRRCHLQGADS 90
M + R ++Y+ L D+ + + ++ PV ++ G+ P+ML++ C L
Sbjct: 110 MPNEARLRNLTYSAPLYVDITKTKNVEGLDPVETQHQKTFIGKIPIMLRSTYCLLSQLTD 169
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
+ L L E + GGYFI+NG E+V +I ++ ++ S +D + Y K +
Sbjct: 170 RDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFSMKDGK--YAFKTEIRS 224
Query: 151 CVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
C+ + + TL + + GS + G+ + +P+ IV +AL D +
Sbjct: 225 CLEHSSRPTSTLWVNMMARGSQNIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRD 284
Query: 201 IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAE---VQDLSLTTRLQCLQHIGEHFQP 257
I H+ +D+ P + E VK L E VQ+ ++ L IG +
Sbjct: 285 ILEHIIYDFDD-----------PEMMEMVKPSLDEAFVVQEQNVA-----LNFIGA--RG 326
Query: 258 VIDGLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNP 313
G+ + A+ +++ + H+ ++ K L +M+ +L D+
Sbjct: 327 ARPGVTKDKRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDR 386
Query: 314 DSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKN 373
D N+ + L G L+ + ++ +++ + Q I+ GK F N++ ++ N
Sbjct: 387 DHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYTQKFIDR-GKDF------NLELAIKTN 439
Query: 374 PSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGL 433
I + L TG Q Q RAG + RL F +S R V+ G
Sbjct: 440 I---ITDGLRYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRVNSPIGRDG- 494
Query: 434 RTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSIL 493
+ R+L WG LCP TP+G GL+ ++ ++ + IL
Sbjct: 495 KLAKPRQLHNTLWGMLCPAETPEGAAVGLVKNLALMAYIS-----------VGSQPSPIL 543
Query: 494 RVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VS 547
L M +L ++ S + ++G VG+ + E+++A LR+L+ VS
Sbjct: 544 EFLEEWSM-ENLEEIAPSAIADATKIFVNGCWVGI--HRDPEQLMATLRKLRRQMDIIVS 600
Query: 548 AASVIPD--DLEVGYVPLSLGGAYPGLYLFTSPPKFVRPV------------RNISLPSE 593
S+I D D E+ ++T + RP+ ++ + E
Sbjct: 601 EVSMIRDIRDREI--------------RIYTDAGRICRPLLIVENGSLLLKKTHVEMLKE 646
Query: 594 ESQN------------IELIGPFEQ-VFMEIRCPDGGDGGRRNAFPAT--HEEIHPTGML 638
N +E I E+ M P + A+ T H EIHP +L
Sbjct: 647 RDYNNYSWQVLVASGVVEYIDTLEEETVMIAMSPYDLKQDKDYAYCTTYTHCEIHPAMIL 706
Query: 639 SVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTY 698
V A++ P+ DHNQSPRN YQ M KQ MG + R D + L P P+V T +
Sbjct: 707 GVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPMKPLVTTRSM 766
Query: 699 TKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT-------ETID 751
E P G N+IVA+L YTGY+ ED++ILN S+V+RG Y++ D
Sbjct: 767 EYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDSENKRVGD 826
Query: 752 LSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKT------- 804
++ K +RG RN L D DG+ G + + + KT
Sbjct: 827 QEENFEKPNRGTCQGMRNAHYDKL----DDDGIIAPGIRVSGDD---VVIGKTITLPEND 879
Query: 805 ----TNSWRTNSR------KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKF 854
+N+ R + R + SE+ VD V + + NS+ + IR R R P IGDKF
Sbjct: 880 DELDSNTKRFSKRDASTFLRNSETGIVDQVMLTL-NSEGY-KFCKIRVRSVRIPQIGDKF 937
Query: 855 SSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
+SRHGQKG C + DM F+ G+ PD+IINPHA PSRMTI L+E + K
Sbjct: 938 ASRHGQKGTCGIQYRQEDMAFT-CEGLAPDIIINPHAIPSRMTIGHLIECLQGK 990
>gi|46669|emb|CAA32924.1| RNA polymerase subunit B (AA 1-1126) [Sulfolobus acidocaldarius]
Length = 1126
Score = 233 bits (593), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 227/900 (25%), Positives = 395/900 (43%), Gaps = 129/900 (14%)
Query: 61 GSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVI 120
G P+ G P+MLK+ KL+ + E+ + GGYFI+NG E++ I
Sbjct: 107 GEPI---EIYIGDLPIMLKSVADPTSNLPIDKLIEIGEDPKDPGGYFIVNGSEKM----I 159
Query: 121 LPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFW-LQG 179
+ +++ + V + T A V + V ++ L + ++++ F + G
Sbjct: 160 IAQEDLATNRVLVDYGKSGSNITHVAKVTSSAAGYRVQVMIE--RLKDSTIQISFATVPG 217
Query: 180 KEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDL 239
+ +P I+++AL D +I ++ D + + E ++ + Q
Sbjct: 218 R---IPFAIIMRALGFVTDRDIVYAVSL--DPQIQNE--------------LLPSLEQAS 258
Query: 240 SLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLN----DNNDKFNLLIF 295
S+T+ + L IG V G + E+ AE VI Y HL D K L
Sbjct: 259 SITSAEEALDFIGNR---VAIGQKRENRIQKAEQVIDKYFLPHLGTSPEDRKKKGYYLAS 315
Query: 296 MLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQ--DEIEN 353
+ K+ L D+ D N+ + L G L T + + ++ K L+ ++ +
Sbjct: 316 AVNKILELYLGRREPDDKDHYANKRVRLAGDLFTSLFRVAFKAFV---KDLVYQLEKSKV 372
Query: 354 NGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLN 413
G++ L + E+ R A TG + R G + +R N
Sbjct: 373 RGRRLSLTALVRADIITERI----------------RHALATGNWVGGRTGVSQLLDRTN 416
Query: 414 FLRFISFFRAVHRGASFA-GLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRV 472
+L +S R V +S A G R L WG +CP TP+G GL+ ++ +V
Sbjct: 417 WLSMLSHLRRVV--SSLARGQPNFEARDLHGTQWGRMCPFETPEGPNSGLVKNLALLAQV 474
Query: 473 ASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPP---------AVLSVLLDG 523
+ + + + RV +G++ S+ +++ + V L+G
Sbjct: 475 SVGINE-----------SVVERVAYELGVV-SVEDVIRRISEQNEDVEKYMSWSKVYLNG 522
Query: 524 RVVGVIP-SSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFV 582
R++G E+ K + RR + D++ V Y+ +++ +
Sbjct: 523 RLLGYYEDGKELAKKIRESRR-----QGKLSDEVNVAYIATDYLNE---VHINCDAGRVR 574
Query: 583 RP--VRNISLPSEESQNIELIGPFEQVFME------IRCPDGGDGGRRNAFPA------- 627
RP + N P ++++I+ + E F + I D + NA+ A
Sbjct: 575 RPLIIVNNGTPLVDTEDIKKLKNGEITFDDLVKQGKIEFIDAEE--EENAYVALNPQDLT 632
Query: 628 ---THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYH 684
TH EI P+ +L ++A++ PY +HNQSPRN YQ MAKQ++G + R D + +
Sbjct: 633 PDHTHLEIWPSAILGIIASIIPYPEHNQSPRNTYQSAMAKQSLGLYASNYQIRTDTRAHL 692
Query: 685 LQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHG-- 742
L PQ P+V+T G ++ P G NAI+A+++YTGY+MED++I+NKSS++RGM
Sbjct: 693 LHYPQMPLVQTRMLGVIGYNDRPAGANAILAIMSYTGYNMEDSIIMNKSSIERGMYRSTF 752
Query: 743 -QIYQTETID----------LSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMI 791
++Y TE + + G K +G+ +R +D + ++ G + +
Sbjct: 753 FRLYSTEEVKYPGGQEDKIVTPEAGVKGYKGKDYYRLLEDNGVVSPEVEVKGGDVLIGKV 812
Query: 792 HPGEPYCSIYDKTTNSWRTNSR---KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNP 848
P + + + ++ + E+ VD V + N + +R R R P
Sbjct: 813 SPPRFLQEFKELSPEQAKRDTSIVTRHGENGIVDLVLITETLEGN--KLVKVRVRDLRIP 870
Query: 849 IIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
IGDKF++RHGQKGV L +DMP++ G+ PD+I+NPHA PSRMTI ++E++ K
Sbjct: 871 EIGDKFATRHGQKGVVGILIDQVDMPYTA-KGIVPDIILNPHALPSRMTIGQIMEAIGGK 929
>gi|167044136|gb|ABZ08819.1| putative RNA polymerase Rpb2, domain 6 [uncultured marine
crenarchaeote HF4000_APKG5C13]
Length = 1114
Score = 232 bits (592), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 244/921 (26%), Positives = 399/921 (43%), Gaps = 127/921 (13%)
Query: 37 HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
R +SY LM +E ++ G + + G P+M+K+ C L+ QKL+
Sbjct: 84 EARLRNVSYVAPLM--LEASVIEDGKTLENRFLHIGDIPIMVKSEGCILRNFSEQKLIDH 141
Query: 97 KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQ 156
E+ + GGYFI+NG ERV V L +Y +V + D+ G K V +
Sbjct: 142 AEDPYDPGGYFIINGSERVI--VGLEDLSYNKIIVDA---DKIGG---KKVFKAKIYSSI 193
Query: 157 SSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKE 216
KL +L + + G +P+ +++AL +D EI + ++ ++K + E
Sbjct: 194 VGYRAKLELVLKEDGLIVARIPGSPVDIPIITLVRALGLESDKEIASAISL--NDKIQNE 251
Query: 217 KGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIR 276
+ + ++T +++I + P G+ E AET++
Sbjct: 252 ---------------LEGSFEKTEISTPKDAIEYISKRIAP---GMLEEFQIKRAETLLD 293
Query: 277 DYIFVHLN----DNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYL 332
+ HL + +K L KL L D+ D N+ + G ++
Sbjct: 294 WGLLPHLGKQPENRKEKIQFLGEAACKLLELKLGWIQPDDKDHYGNKVVKFAGQMLADLF 353
Query: 333 KEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLA 392
+ + +R K ++E +G+K I V I + + TG
Sbjct: 354 RTAFRNLVRDMKY----QLERSGQK------RGINAVSAAIRPGIISDKLNNAIATGNWG 403
Query: 393 TQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT---SVRKLLPESWGFL 449
+ R G T +R N+L IS R V S RT R L +G +
Sbjct: 404 -------RGRVGVTQLLDRTNYLSTISHLRRVQSPLS----RTQPNFEARDLHSTHFGRI 452
Query: 450 CPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLV 509
CP TP+G CGL+ ++ + ++ S I + IG + V
Sbjct: 453 CPSETPEGSNCGLVKNLALSAIISVSVPSEEIIEKMYE---------IGTEYFTDVKDSV 503
Query: 510 KSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAY 569
K V +DG+++G + +K+ + LR L+ S S I + + GA
Sbjct: 504 KKDGT---RVFVDGKLIGY--HKDGKKLASSLRELRRS--SKIHPHIGISIHIPEQEGAT 556
Query: 570 PGLYLFTSPPKFVRPVRNIS--------------LPSEESQN-------IELIGPFEQVF 608
LY+ + + +R + + L S N IELI E+
Sbjct: 557 KRLYVNCNAGRVLRSLIVVKDGKSTLTPDLLDKILKKLVSWNDLVRMGVIELIDANEEEN 616
Query: 609 MEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMG 668
I D ++ TH EI P+ +L A++ PY +HNQSPRN Y+ MAKQ++G
Sbjct: 617 CFITFDD------KHVKKHTHTEIFPSAILGAGASIIPYPEHNQSPRNTYESAMAKQSLG 670
Query: 669 FSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAM 728
FS + + + + PQTPIV T G+++ P G N +VAVL + GY++EDA+
Sbjct: 671 FSTPMMNTSTYVRQHTMLYPQTPIVTTRAMGLLGLEKRPAGQNCVVAVLPFDGYNIEDAI 730
Query: 729 ILNKSSVDRGMCHG---QIYQTET------------IDLSDDGNKVDRGQKLFRRNKDAK 773
+L+KS+++RG+ +IY+ E+ I +DD + +G+K +R +D
Sbjct: 731 VLSKSAIERGLGRTLFYRIYEAESKQYPGGMRDNFEIPNADDNLRGYKGEKSYRLLEDDG 790
Query: 774 SLHSVID-SDGLPYVGQMIHPG--EPYCSIYDKTTNSWRTNSRKG---SESVFVDYVAVD 827
+ S S G +G+ P E Y + + + +R ++ G SE+ VD +
Sbjct: 791 IVASESRVSGGDILIGKTSPPRFMEEYHEL--EGSGPYRRDTSIGVRPSETGVVDTII-- 846
Query: 828 MKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLII 887
+ S + +R R R P IGDKF+SRHGQKGV L D+P++ G+ PD++I
Sbjct: 847 LTQSAEGGKMFKVRIRDMRLPEIGDKFASRHGQKGVVGLLAKAEDLPYTA-DGISPDVLI 905
Query: 888 NPHAFPSRMTIAMLLESVAAK 908
NPHAFPSRMT+ M+LES+ K
Sbjct: 906 NPHAFPSRMTVGMMLESITGK 926
>gi|308798899|ref|XP_003074229.1| DNA-directed RNA polymerase (ISS) [Ostreococcus tauri]
gi|116000401|emb|CAL50081.1| DNA-directed RNA polymerase (ISS) [Ostreococcus tauri]
Length = 999
Score = 232 bits (592), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 240/896 (26%), Positives = 381/896 (42%), Gaps = 147/896 (16%)
Query: 77 MLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRS---------VILPKQNYP 127
ML++ C L G ++L L E + GGYF++NG E+V + + K+
Sbjct: 1 MLRSDYCSLHGHTDKELTELGECPYDEGGYFVINGSEKVLIAQERMSTNHVYVFEKKQPS 60
Query: 128 MSMVRSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVG 187
M ++ R + E + A CV + +V K G +R + +P+
Sbjct: 61 KFMWQAECRSQPERGSRGAS--SCVMRQMHAVGTKD---APGPIRCTLPYIRTD--IPIF 113
Query: 188 IVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQC 247
+V +AL D +I H+ CYD E + P + E I EV
Sbjct: 114 VVFRALGFVADKDILEHI--CYDLA-DNEMMEMLRPSIEEAFVIQSQEV----------A 160
Query: 248 LQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDNND----KFNLLIFMLQKLFSL 303
L IG+ V G+ E A+ +++ + H+ D K L +M+ +L
Sbjct: 161 LDFIGKRGSAV--GVSREKRIKYAKEILQKELLPHVGVREDCETKKAYFLGYMIHRLLLC 218
Query: 304 VDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNL 363
D+ D N+ + L G L+ ++ L K +L ++GK+ L
Sbjct: 219 SLGRRPEDDRDHYGNKRLDLGGPLLAQLFRQLFRK-LTKDVRLYCQRCIDSGKEIQL-QL 276
Query: 364 ANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRA 423
A IK +K I ++ L TG +Q D+ RAG + RL++ +S R
Sbjct: 277 A-IK-------AKTITQGLKYSLATGNWGSQGAQDI--RAGVSQVLNRLSYSSTLSHLRR 326
Query: 424 VHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIR 483
++ G + R+L WG +CP TP+G+ GL+ ++
Sbjct: 327 INSPIGREG-KLAKPRQLHNSLWGMICPAETPEGQAVGLVKNLA---------------- 369
Query: 484 DFSKMRTSILRVLIGVGMIPSLPKL----------VKSGPPAVLS----VLLDGRVVGV- 528
L L+ VG PS P L ++ P++++ + L+G VGV
Sbjct: 370 ---------LMALVSVGS-PSEPILEFLDEWTMENLEEISPSLIAESTKIFLNGVWVGVH 419
Query: 529 -IPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPL--SLGGAYPGLYLFTSPPKFVRPV 585
P+ + + R+ V ++ + D+ + + L G L++ K
Sbjct: 420 RDPADLVRTLRKLRRQCDVDSSVSVVHDIRLKELRLYTDYGRCTRPLFIVDDDQKLRIKK 479
Query: 586 RNISLPSEE-----SQNIELIGPF--------EQVFMEIRCPDGGDGGRRNA-------F 625
++I L +E+ S N + F E+ M D R++A
Sbjct: 480 QHIELLTEKDVTGYSWNELVTSGFIEYVDTEEEETTMISMTIDDLAAARQSADRKTGVAI 539
Query: 626 PATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHL 685
TH EIHP+ +L + A++ P+ DHNQSPRN YQ M KQ MG V + R D Y L
Sbjct: 540 RYTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGMYVTNYQIRMDTLGYVL 599
Query: 686 QTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIY 745
PQ P+V T E P G NA+VA++ YTGY+ ED++++N+S++DRG+ Y
Sbjct: 600 FYPQKPLVTTRAMEYLHFRELPAGCNAVVAIMCYTGYNQEDSVLMNQSAIDRGLFRSLYY 659
Query: 746 QTETIDLSDDGN-------KVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYC 798
++ + G+ + DR L R+ + +D DGL
Sbjct: 660 RSFKDEEKKQGSLSREEFERPDRDTCLGMRH----GTYDKLDDDGL-------------- 701
Query: 799 SIYDKTTNSWRTNSR------KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGD 852
IYD S R + + K +E+ +D V + N + L + +R R R P +GD
Sbjct: 702 -IYDSAVLSKRFSKKDCSTGMKHAETGIIDQVLL-TTNDQGL-RFVKLRVRSMRTPQVGD 758
Query: 853 KFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
KFSSRHGQKG + DMPF+ G+ PD+I+NPHA PSRMTI L+E + K
Sbjct: 759 KFSSRHGQKGTVGMTYTQEDMPFT-CEGITPDIIVNPHAIPSRMTIGQLVECIMGK 813
>gi|17136444|ref|NP_476706.1| RNA polymerase II 140kD subunit [Drosophila melanogaster]
gi|195329082|ref|XP_002031240.1| GM24152 [Drosophila sechellia]
gi|12644108|sp|P08266.2|RPB2_DROME RecName: Full=DNA-directed RNA polymerase II subunit RPB2;
Short=RNA polymerase II subunit 2; Short=RNA polymerase
II subunit B2; AltName: Full=DNA-directed RNA polymerase
II 140 kDa polypeptide
gi|7299847|gb|AAF55024.1| RNA polymerase II 140kD subunit [Drosophila melanogaster]
gi|27819971|gb|AAO25022.1| LD22387p [Drosophila melanogaster]
gi|194120183|gb|EDW42226.1| GM24152 [Drosophila sechellia]
Length = 1176
Score = 232 bits (592), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 252/954 (26%), Positives = 406/954 (42%), Gaps = 152/954 (15%)
Query: 34 MFDHCRQAKISYTGKLMADV-EFQYLDAGSPV--VRERFNFGQFPVMLKTRRCHLQGADS 90
M + R ++Y+ L D+ + + ++ PV ++ G+ P+ML++ C L
Sbjct: 110 MPNEARLRNLTYSAPLYVDITKTKNVEGLDPVETQHQKTFIGKIPIMLRSTYCLLSQLTD 169
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
+ L L E + GGYFI+NG E+V +I ++ ++ S +D + Y K +
Sbjct: 170 RDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFSMKDGK--YAFKTEIRS 224
Query: 151 CVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
C+ + + TL + + GS + G+ + +P+ IV +AL D +
Sbjct: 225 CLEHSSRPTSTLWVNMMARGSQNIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRD 284
Query: 201 IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAE---VQDLSLTTRLQCLQHIGEHFQP 257
I H+ +D+ P + E VK L E VQ+ ++ L IG +
Sbjct: 285 ILEHIIYDFDD-----------PEMMEMVKPSLDEAFVVQEQNVA-----LNFIGA--RG 326
Query: 258 VIDGLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNP 313
G+ + A+ +++ + H+ ++ K L +M+ +L D+
Sbjct: 327 ARPGVTKDKRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDR 386
Query: 314 DSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKN 373
D N+ + L G L+ + ++ +++ + Q I+ GK F N++ ++ N
Sbjct: 387 DHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYTQKFIDR-GKDF------NLELAIKTN 439
Query: 374 PSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGL 433
I + L TG Q Q RAG + RL F +S R V+ G
Sbjct: 440 I---ITDGLRYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRVNSPIGRDG- 494
Query: 434 RTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSIL 493
+ R+L WG LCP TP+G GL+ ++ ++ + IL
Sbjct: 495 KLAKPRQLHNTLWGMLCPAETPEGAAVGLVKNLALMAYIS-----------VGSQPSPIL 543
Query: 494 RVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VS 547
L M +L ++ S + ++G VG+ + E+++A LR+L+ VS
Sbjct: 544 EFLEEWSM-ENLEEIAPSAIADATKIFVNGCWVGI--HRDPEQLMATLRKLRRQMDIIVS 600
Query: 548 AASVIPD--DLEVGYVPLSLGGAYPGLYLFTSPPKFVRPV------------RNISLPSE 593
S+I D D E+ ++T + RP+ ++ + E
Sbjct: 601 EVSMIRDIRDREI--------------RIYTDAGRICRPLLIVENGSLLLKKTHVEMLKE 646
Query: 594 ESQN------------IELIGPFEQ-VFMEIRCPDGGDGGRRNAFPAT--HEEIHPTGML 638
N +E I E+ M P + A+ T H EIHP +L
Sbjct: 647 RDYNNYSWQVLVASGVVEYIDTLEEETVMIAMSPYDLKQDKDYAYCTTYTHCEIHPAMIL 706
Query: 639 SVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTY 698
V A++ P+ DHNQSPRN YQ M KQ MG + R D + L P P+V T +
Sbjct: 707 GVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPMKPLVTTRSM 766
Query: 699 TKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT-------ETID 751
E P G N+IVA+L YTGY+ ED++ILN S+V+RG Y++ D
Sbjct: 767 EYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDSENKRVGD 826
Query: 752 LSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKT------- 804
++ K RG RN L D DG+ G + + + KT
Sbjct: 827 QEENFEKPHRGTCQGMRNAHYDKL----DDDGIIAPGIRVSGDD---VVIGKTITLPEND 879
Query: 805 ----TNSWRTNSR------KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKF 854
+N+ R + R + SE+ VD V + + NS+ + IR R R P IGDKF
Sbjct: 880 DELDSNTKRFSKRDASTFLRNSETGIVDQVMLTL-NSEGY-KFCKIRVRSVRIPQIGDKF 937
Query: 855 SSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
+SRHGQKG C + DM F+ G+ PD+IINPHA PSRMTI L+E + K
Sbjct: 938 ASRHGQKGTCGIQYRQEDMAFT-CEGLAPDIIINPHAIPSRMTIGHLIECLQGK 990
>gi|195570991|ref|XP_002103487.1| GD18948 [Drosophila simulans]
gi|194199414|gb|EDX12990.1| GD18948 [Drosophila simulans]
Length = 1176
Score = 232 bits (591), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 252/954 (26%), Positives = 406/954 (42%), Gaps = 152/954 (15%)
Query: 34 MFDHCRQAKISYTGKLMADV-EFQYLDAGSPV--VRERFNFGQFPVMLKTRRCHLQGADS 90
M + R ++Y+ L D+ + + ++ PV ++ G+ P+ML++ C L
Sbjct: 110 MPNEARLRNLTYSAPLYVDITKTKNVEGLDPVETQHQKTFIGKIPIMLRSTYCLLSQLTD 169
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
+ L L E + GGYFI+NG E+V +I ++ ++ S +D + Y K +
Sbjct: 170 RDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFSMKDGK--YAFKTEIRS 224
Query: 151 CVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
C+ + + TL + + GS + G+ + +P+ IV +AL D +
Sbjct: 225 CLEHSSRPTSTLWVNMMARGSQNIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRD 284
Query: 201 IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAE---VQDLSLTTRLQCLQHIGEHFQP 257
I H+ +D+ P + E VK L E VQ+ ++ L IG +
Sbjct: 285 ILEHIIYDFDD-----------PEMMEMVKPSLDEAFVVQEQNVA-----LNFIGA--RG 326
Query: 258 VIDGLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNP 313
G+ + A+ +++ + H+ ++ K L +M+ +L D+
Sbjct: 327 ARPGVTKDKRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDR 386
Query: 314 DSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKN 373
D N+ + L G L+ + ++ +++ + Q I+ GK F N++ ++ N
Sbjct: 387 DHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYTQKFIDR-GKDF------NLELAIKTN 439
Query: 374 PSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGL 433
I + L TG Q Q RAG + RL F +S R V+ G
Sbjct: 440 I---ITDGLRYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRVNSPIGRDG- 494
Query: 434 RTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSIL 493
+ R+L WG LCP TP+G GL+ ++ ++ + IL
Sbjct: 495 KLAKPRQLHNTLWGMLCPAETPEGAAVGLVKNLALMAYIS-----------VGSQPSPIL 543
Query: 494 RVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VS 547
L M +L ++ S + ++G VG+ + E+++A LR+L+ VS
Sbjct: 544 EFLEEWSM-ENLEEIAPSAIADATKIFVNGCWVGI--HRDPEQLMATLRKLRRQMDIIVS 600
Query: 548 AASVIPD--DLEVGYVPLSLGGAYPGLYLFTSPPKFVRPV------------RNISLPSE 593
S+I D D E+ ++T + RP+ ++ + E
Sbjct: 601 EVSMIRDIRDREI--------------RIYTDAGRICRPLLIVENGSLLLKKTHVEMLKE 646
Query: 594 ESQN------------IELIGPFEQ-VFMEIRCPDGGDGGRRNAFPAT--HEEIHPTGML 638
N +E I E+ M P + A+ T H EIHP +L
Sbjct: 647 RDYNNYSWQVLVASGVVEYIDTLEEETVMIAMSPYDLKQDKDYAYCTTYTHCEIHPAMIL 706
Query: 639 SVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTY 698
V A++ P+ DHNQSPRN YQ M KQ MG + R D + L P P+V T +
Sbjct: 707 GVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPMKPLVTTRSM 766
Query: 699 TKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT-------ETID 751
E P G N+IVA+L YTGY+ ED++ILN S+V+RG Y++ D
Sbjct: 767 EYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDSENKRVGD 826
Query: 752 LSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKT------- 804
++ K RG RN L D DG+ G + + + KT
Sbjct: 827 QEENFEKPHRGTCQGMRNAHYDKL----DDDGIIAPGIRVSGDD---VVIGKTITLPEND 879
Query: 805 ----TNSWRTNSR------KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKF 854
+N+ R + R + SE+ VD V + + NS+ + IR R R P IGDKF
Sbjct: 880 DELDSNTKRFSKRDASTFLRNSETGIVDQVMLTL-NSEGY-KFCKIRVRSVRIPQIGDKF 937
Query: 855 SSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
+SRHGQKG C + DM F+ G+ PD+IINPHA PSRMTI L+E + K
Sbjct: 938 ASRHGQKGTCGIQYRQEDMAFT-CEGLAPDIIINPHAIPSRMTIGHLIECLQGK 990
>gi|156084492|ref|XP_001609729.1| DNA-directed RNA polymerase, beta subunit family protein [Babesia
bovis]
gi|154796981|gb|EDO06161.1| DNA-directed RNA polymerase, beta subunit family protein [Babesia
bovis]
Length = 1207
Score = 232 bits (591), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 240/938 (25%), Positives = 403/938 (42%), Gaps = 135/938 (14%)
Query: 39 RQAKISYTGKLMADVEFQ-YL---DAGSPVVRE-----RFNFGQFPVMLKTRRCHLQGAD 89
R ++Y+ ++ D+E + YL + + ++E R G+ P+MLK+ C +
Sbjct: 150 RLRNLTYSSQIYVDIEQKTYLRDENTNTETLQETITYPRIELGRIPMMLKSAYCWTKDIS 209
Query: 90 SQKLVSLKEEAAEMGGYFILNGLERV----------FRSVILPKQNYPMSMVRSSFRDRR 139
L + E + GGYFI+NG ERV + + KQ S+V + R +
Sbjct: 210 EDDLADVGECPFDEGGYFIVNGGERVLIGQERMANNYIYIFKKKQPSKYSLV-AEIRSQP 268
Query: 140 EGYTDKAVVIRCVRKDQSSVT---LKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDT 196
E ++ + K S + K + L GS+ +L+ +P+ I+ +AL
Sbjct: 269 E-FSQGTTPFSIMMKSTSGIAGNRFKSHGQLVGSIP---YLKSD---IPIAILFRALGCV 321
Query: 197 NDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQ 256
D +I + YD + K+ + ++ L E D S T+ CL IG+
Sbjct: 322 ADRDILQRIV--YDFEDKQ---------MLTLMRPSLEETADYS--TQEMCLDFIGKRGP 368
Query: 257 PVIDGLQSESYYAVAETVIRDYIFVHLNDN----NDKFNLLIFMLQKLFSLVDHTSVSDN 312
V L++ YA + ++R + H+ + K L +M+ +L D+
Sbjct: 369 TVGAPLETRVQYA--KDLLRQHFLPHVGTEPGCESRKCYFLGYMVHRLLLSRLGRIPEDD 426
Query: 313 PDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEK 372
D + + L G L+ ++ K+++Q +I++ G++FD
Sbjct: 427 RDHFGKKRLDLAGSLMASSFGTLFRKMVKDTKRILQQQIDS-GREFDVAGAVR------- 478
Query: 373 NPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAG 432
+ QI ++ L TG + R G + RL F ++S R ++ G
Sbjct: 479 -SATQITHGLQYQLLTGNWGRDRDGKVV-RTGVSQVLNRLTFASYLSHLRRLNTPLGREG 536
Query: 433 LRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSI 492
+ R+L WG +CP TP+G+ GL+ ++ C ++ ++I
Sbjct: 537 -KIAKPRQLHNTHWGMICPAETPEGQAVGLVKNLALMCFIS-----------VGTAASTI 584
Query: 493 LRVLIGVGMIPSLPKLVKSGPPAVLS----VLLDGRVVGVIPSSE--IEKVVAHLRRLKV 546
L GM SL ++ PP V+ + ++G VG +E ++ ++ RR +
Sbjct: 585 NEFLCEWGM-DSLDEV----PPEVIKDRIKIFINGTWVGCFDEAESLVKTLLELRRRGNI 639
Query: 547 SAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRP-----------VRNISLPSEES 595
+A + I D+ V + FT + +RP + + ++
Sbjct: 640 AAETSIVCDIVSQEVKI-----------FTDAGRAMRPLLIVENGNTLAITKTDIARLDN 688
Query: 596 QNIELIGPFEQVFME-IRCPDG--------GDGGRRNAFPA---THEEIHPTGMLSVVAN 643
G E +E + C + + + N+ TH EIHP+ +L V A+
Sbjct: 689 NECNWDGLIESGVVEYVDCEEEEMCMIAMFAEDLKNNSTYCNTYTHCEIHPSMILGVCAS 748
Query: 644 LTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGI 703
+ P+ D NQSPRN YQ M KQ MG R D + L PQ P+V T +
Sbjct: 749 IIPFPDQNQSPRNTYQSAMGKQAMGVYATNFNLRMDPLSHLLYYPQKPLVCTRSMEFLRF 808
Query: 704 DEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQ 763
E P G NAIVA++ YTGY+ ED++I+N+SS+DRG+ +T + G+ V
Sbjct: 809 RELPAGINAIVAIMCYTGYNQEDSLIMNQSSIDRGLFRSAFNRTYVSEEKHVGSTV---V 865
Query: 764 KLFRRNKDAKSL------HSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSR---- 813
+ F R A + ++ +D+DGL G + + + N R
Sbjct: 866 ERFERPNPATCVGLKRGDYTKLDADGLVQPGSRVLGDDVIIGRTSACNDEEDENLRQDCS 925
Query: 814 ---KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPD 870
+ SE+ VD V + N+K + A ++ R R P IGDKF+SRHGQKG +
Sbjct: 926 CCLRTSENGVVDTVLIS-SNAKG-SRFAKVKVRSIRVPQIGDKFASRHGQKGTIGMTYRT 983
Query: 871 IDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
D+PF+ G+ PD+I+NPHA PSRMTI L+E + K
Sbjct: 984 EDLPFT-CEGIVPDIIMNPHAVPSRMTIGHLVECLVGK 1020
>gi|195501705|ref|XP_002097907.1| GE24221 [Drosophila yakuba]
gi|194184008|gb|EDW97619.1| GE24221 [Drosophila yakuba]
Length = 1176
Score = 232 bits (591), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 252/954 (26%), Positives = 406/954 (42%), Gaps = 152/954 (15%)
Query: 34 MFDHCRQAKISYTGKLMADV-EFQYLDAGSPV--VRERFNFGQFPVMLKTRRCHLQGADS 90
M + R ++Y+ L D+ + + ++ PV ++ G+ P+ML++ C L
Sbjct: 110 MPNEARLRNLTYSAPLYVDITKTKNVEGLDPVETQHQKTFIGKIPIMLRSTYCLLSQLTD 169
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
+ L L E + GGYFI+NG E+V +I ++ ++ S +D + Y K +
Sbjct: 170 RDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFSMKDGK--YAFKTEIRS 224
Query: 151 CVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
C+ + + TL + + GS + G+ + +P+ IV +AL D +
Sbjct: 225 CLEHSSRPTSTLWVNMMARGSQNIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRD 284
Query: 201 IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAE---VQDLSLTTRLQCLQHIGEHFQP 257
I H+ +D+ P + E VK L E VQ+ ++ L IG +
Sbjct: 285 ILEHIIYDFDD-----------PEMMEMVKPSLDEAFVVQEQNVA-----LNFIGA--RG 326
Query: 258 VIDGLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNP 313
G+ + A+ +++ + H+ ++ K L +M+ +L D+
Sbjct: 327 ARPGVTKDKRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDR 386
Query: 314 DSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKN 373
D N+ + L G L+ + ++ +++ + Q I+ GK F N++ ++ N
Sbjct: 387 DHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYTQKFIDR-GKDF------NLELAIKTN 439
Query: 374 PSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGL 433
I + L TG Q Q RAG + RL F +S R V+ G
Sbjct: 440 I---ITDGLRYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRVNSPIGRDG- 494
Query: 434 RTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSIL 493
+ R+L WG LCP TP+G GL+ ++ ++ + IL
Sbjct: 495 KLAKPRQLHNTLWGMLCPAETPEGAAVGLVKNLALMAYIS-----------VGSQPSPIL 543
Query: 494 RVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VS 547
L M +L ++ S + ++G VG+ + E+++A LR+L+ VS
Sbjct: 544 EFLEEWSM-ENLEEIAPSAIADATKIFVNGCWVGI--HRDPEQLMATLRKLRRQMDIIVS 600
Query: 548 AASVIPD--DLEVGYVPLSLGGAYPGLYLFTSPPKFVRPV------------RNISLPSE 593
S+I D D E+ ++T + RP+ ++ + E
Sbjct: 601 EVSMIRDIRDREI--------------RIYTDAGRICRPLLIVENGSLLLKKTHVEMLKE 646
Query: 594 ESQN------------IELIGPFEQ-VFMEIRCPDGGDGGRRNAFPAT--HEEIHPTGML 638
N +E I E+ M P + A+ T H EIHP +L
Sbjct: 647 RDYNNYSWQVLVASGVVEYIDTLEEETVMIAMSPYDLKQDKDYAYCTTYTHCEIHPAMIL 706
Query: 639 SVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTY 698
V A++ P+ DHNQSPRN YQ M KQ MG + R D + L P P+V T +
Sbjct: 707 GVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPMKPLVTTRSM 766
Query: 699 TKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT-------ETID 751
E P G N+IVA+L YTGY+ ED++ILN S+V+RG Y++ D
Sbjct: 767 EYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDSENKRVGD 826
Query: 752 LSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKT------- 804
++ K RG RN L D DG+ G + + + KT
Sbjct: 827 QEENFEKPHRGTCQGMRNAHYDKL----DDDGIIAPGIRVSGDD---VVIGKTITLPEND 879
Query: 805 ----TNSWRTNSR------KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKF 854
+N+ R + R + SE+ VD V + + NS+ + IR R R P IGDKF
Sbjct: 880 DELDSNTKRFSKRDASTFLRNSETGIVDQVMLTL-NSEGY-KFCKIRVRSVRIPQIGDKF 937
Query: 855 SSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
+SRHGQKG C + DM F+ G+ PD+IINPHA PSRMTI L+E + K
Sbjct: 938 ASRHGQKGTCGIQYRQEDMAFT-CEGLAPDIIINPHAIPSRMTIGHLIECLQGK 990
>gi|224587859|gb|ACN58727.1| DNA-directed RNA polymerase III subunit RPC2 [Salmo salar]
Length = 814
Score = 232 bits (591), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 192/643 (29%), Positives = 296/643 (46%), Gaps = 89/643 (13%)
Query: 311 DNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVM 370
D+ D N+ + L G L+++ ++ + + + KK I D+I + F +I K M
Sbjct: 33 DDRDYYGNKRLELAGQLLSLLFEDLFKKFNSELKK-ISDQIIPKQRAAQF----DIVKHM 87
Query: 371 EKNPSKQIGTSIETMLKTGRLATQT-GLDLQQRAGYTVQAERLNFLRFISFFRAVHRGAS 429
++ QI + + TG + + +D R G T RL+F+ + + +
Sbjct: 88 RQD---QITNGMVNAISTGNWSLKRFKMD---RQGVTQVLSRLSFISALGMMTRI--SSQ 139
Query: 430 FAGLRTTS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKM 488
F R S R L P WG LCP TP+GE CGL+ ++ + + + ++ +
Sbjct: 140 FEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIVKLAFNL 199
Query: 489 RTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSA 548
+ +L G + P+V V L+G ++GVI + +++V R ++
Sbjct: 200 GVEDVNLLCGEEL----------SYPSVFLVFLNGNILGVI--RDHQRLVYTFRLMR--R 245
Query: 549 ASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRP--VRNISLPSEESQNIELIG---- 602
A I + +V +S +Y+ + + RP + P ++++IE +
Sbjct: 246 AGFINE-----FVSISTNLTDRCVYVSSDGGRLCRPYIIVKKGQPMVKNKHIEELTQGYR 300
Query: 603 PFEQVFMEIRCPDGGDGGRRNAFP-----------ATHEEIHPTGMLSVVANLTPYSDHN 651
FE F+ + D N TH EI P +L V A L PY HN
Sbjct: 301 TFED-FLHESLVEYLDVNEENDCQIALYEHMINKDTTHLEIEPFTLLGVCAGLIPYPHHN 359
Query: 652 QSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTN 711
QSPRN YQC M KQ MG + R D +Y L PQ P+V+T T ++ P G N
Sbjct: 360 QSPRNTYQCAMGKQAMGTIGYNQRNRIDTLMYLLGYPQKPMVKTRTIELIDFEKLPAGQN 419
Query: 712 AIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKV-DR--GQKLFRR 768
A VAV++Y+GYD+EDA+ILNK+S+DRG +Y+ L N+ D+ G L
Sbjct: 420 ATVAVMSYSGYDIEDALILNKASLDRGFGRCLVYKNAKCTLRRYTNQTFDKVMGPMLDAA 479
Query: 769 NKDAKSLHSVIDSDGLPYVGQMI-----------------------HPGEPYCSIYDKTT 805
+ HS++D+DG+ G+ + PG+P Y
Sbjct: 480 TRKPIWRHSILDADGICCPGEKVENKQVLVNKSMPTVTQTPLEGSAQPGQPQ---YRDVP 536
Query: 806 NSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCS 865
S+ KGS +++ V + K I R TR P IGDKFSSRHGQKGVC
Sbjct: 537 VSY-----KGSTDSYIEKVMISSNADDAFLIK--ILLRQTRRPEIGDKFSSRHGQKGVCG 589
Query: 866 QLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
+ P DMPF +G+ PD+I+NPH +PSRMT+ L+E +A K
Sbjct: 590 LIVPQEDMPFCD-SGICPDIIMNPHGYPSRMTVGKLIELLAGK 631
>gi|161527855|ref|YP_001581681.1| DNA-directed RNA polymerase subunit B [Nitrosopumilus maritimus
SCM1]
gi|160339156|gb|ABX12243.1| RNA polymerase Rpb2 domain 6 [Nitrosopumilus maritimus SCM1]
Length = 1115
Score = 232 bits (591), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 260/983 (26%), Positives = 405/983 (41%), Gaps = 165/983 (16%)
Query: 15 LVRHHIESFDYMLDEGLSEMFDHCRQAKI--------------------------SYTGK 48
+ R H+ SFD L+ GL + + Q I S T
Sbjct: 21 IARQHLNSFDEFLERGLQSIINEVGQIDIENAEYPYKIQLGKVKLQQPRMMELDGSITHI 80
Query: 49 LMADVEFQYLDAGSPVVRE------------RF-NFGQFPVMLKTRRCHLQGADSQKLVS 95
A+ + + +PV+ E RF + G PVM K+ C L +QKLV
Sbjct: 81 TPAEARLRNVSYSAPVMMEASVVEDGKILESRFVHIGDVPVMAKSNACILHNFSTQKLVE 140
Query: 96 LKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKD 155
E+ + GGYFI+NG ERV V L +Y +V RE V V
Sbjct: 141 HGEDPNDPGGYFIINGSERVI--VGLEDLSYNKIIVD------RETVGGNIVHKAKVYSS 192
Query: 156 QSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKK 215
KL ++ + + G +PV +++AL +D EI
Sbjct: 193 IVGYRAKLELVMKNDGLIVARIPGSPVDIPVVTLMRALGLESDREI-------------- 238
Query: 216 EKGAVGSPLVSERVKIILAEVQDLS-LTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETV 274
A LV E + A + + T + +I + P G+ E AET+
Sbjct: 239 ---AAAVSLVDELQDELEASFEKAGDVPTAKDAIVYISKRIAP---GMLEEFQIKRAETL 292
Query: 275 IRDYIFVHLN----DNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITI 330
+ + HL + +K L KL L D+ D N+ I G ++
Sbjct: 293 LDWGLLPHLGKHPENRKEKAQFLGEAACKLLELKLDWIRPDDKDHYGNKVIKFAGQMLAD 352
Query: 331 YLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGR 390
+ + +R K ++E +G+K + +I + T +
Sbjct: 353 LFRTAFRNLVRDMKY----QLERSGQKRGI---------------NAVAAAIRPGIITDK 393
Query: 391 L--ATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT---SVRKLLPES 445
L A TG + R G T +R N+L IS R + S RT R L
Sbjct: 394 LNNAIATGNWGRGRVGVTQLLDRTNYLSTISHLRRIQSPLS----RTQPNFEARDLHATH 449
Query: 446 WGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSL 505
+G +CP TP+G CGL+ ++ + ++ S + + T V +
Sbjct: 450 FGRICPSETPEGSNCGLVKNLALSGIISVNVPSEEIVEKLYDLGT--------VHFFDAK 501
Query: 506 PKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSL 565
L K G + +DGR++G E ++ LR L+ + S I + V + +
Sbjct: 502 EDLKKDG----TRIFVDGRLIGYYKDGE--QLAESLRDLRRN--SKIHPHVGVSFHKSEI 553
Query: 566 GGAYPGLYLFTSPPKFVRPV---------------RNISLPSEESQNIELIGPFEQVFM- 609
G+ LY+ + + +RP+ IS ++ +G E +
Sbjct: 554 EGSTRRLYVNCNAGRVLRPLIIIKDNKPLLTADLLDKISKKLISWTDLLRMGVLEMIDAN 613
Query: 610 -EIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMG 668
E C D ++ TH E+ P +L A++ PY +HNQSPRN Y+ MAKQ++G
Sbjct: 614 EEENCYVTLD--EKDTKKHTHLEVFPPAILGAGASIIPYPEHNQSPRNTYESAMAKQSLG 671
Query: 669 FSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAM 728
FS + + + + PQ PIV T G+++ P G N +VAVL + GY++EDA+
Sbjct: 672 FSTPMMNTSTYVRQHFMLYPQVPIVNTKAMKLLGLEDRPAGQNCVVAVLPFDGYNIEDAI 731
Query: 729 ILNKSSVDRGMCHG---QIYQTET------------IDLSDD---GNKVDRGQKLFRRNK 770
+L+K+SVDRG+ +IY E I ++D G K +R +L +
Sbjct: 732 VLSKASVDRGLGRTFFFRIYDAEAKQYPGGMRDAFEIPNAEDNIRGYKGERAYRLLEEDG 791
Query: 771 DAKSLHSVIDSDGLPYVGQMIHPG--EPYCSIYDKTTNSWRTNSRKG---SESVFVDYVA 825
+ V D L +G+ P E Y +++ +R ++ G SE+ VD V
Sbjct: 792 VVATEAPVKGGDIL--IGKTSPPRFMEEYREF--ESSGPYRRDTSIGVRPSETGVVDTVV 847
Query: 826 VDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDL 885
+ N K IR R R P IGDKF+SRHGQKGV L D+P++ +GM PD+
Sbjct: 848 MTQSNEGGKMYK--IRARDMRIPEIGDKFASRHGQKGVLGILAKAEDLPYTA-SGMSPDV 904
Query: 886 IINPHAFPSRMTIAMLLESVAAK 908
+INPHAFPSRMT+ M++ES+ K
Sbjct: 905 LINPHAFPSRMTVGMMMESICGK 927
>gi|284998387|ref|YP_003420155.1| hypothetical protein [Sulfolobus islandicus L.D.8.5]
gi|284446283|gb|ADB87785.1| conserved hypothetical protein [Sulfolobus islandicus L.D.8.5]
Length = 1131
Score = 232 bits (591), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 231/889 (25%), Positives = 384/889 (43%), Gaps = 116/889 (13%)
Query: 67 ERFNFGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNY 126
E G P+MLK+ + KL+ + E+ + GGYFI+NG ERV I+ +++
Sbjct: 115 EEVYIGDLPIMLKSAIDPISQYTLDKLIEIGEDPKDPGGYFIVNGSERV----IVTQEDL 170
Query: 127 PMSMVRSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGF-WLQGKEYLLP 185
+ V T A +I + VT++ L +G+ + F + GK +P
Sbjct: 171 APNRVLVDTGKTGSNITHTAKIISSTAGYRVPVTIE--RLKDGTFHVSFPAVPGK---IP 225
Query: 186 VGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRL 245
I+++AL D +I D + + E P + + I A V D
Sbjct: 226 FVILMRALGILTDRDIV--YAVSLDPEIQNEL----FPSLEQASSI--ANVDD------- 270
Query: 246 QCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHL----NDNNDKFNLLIFMLQKLF 301
L IG V G + E+ A+ +I Y HL +D K L + + K+
Sbjct: 271 -ALDFIGSR---VAIGQKRENRIEKAQQIIDKYFLPHLGTSADDRRKKAYYLAYAISKVI 326
Query: 302 SLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFF 361
L D+ D N+ + L G L + + +++ ++ + G+K
Sbjct: 327 ELYLGRREPDDKDHYANKRLRLAGDLFASLFRVAFKAFVKDLTYQLEKS-KVRGRKLALK 385
Query: 362 NLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFF 421
L V E+ R A TG + R G + +R N+L +S
Sbjct: 386 ALVRPDIVTERI----------------RHALATGNWVGGRTGVSQLLDRTNWLSMLSHL 429
Query: 422 RAVHRGASFA-GLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRG 480
R V +S A G R L WG +CP TP+G GL+ ++ ++A + R
Sbjct: 430 RRVI--SSLARGQPNFEARDLHGTQWGRMCPFETPEGPNSGLVKNLALMAQIAVGINER- 486
Query: 481 NIRDFSKMRTSILRVLIGVGMIPS---LPKLVKSGPP-----AVLSVLLDGRVVGVI-PS 531
+ + L +G++P + ++ + G V+L+GR+VG
Sbjct: 487 ----------IVEKTLYEMGVVPVEEVIRRVTEGGEDQNEYLKWSKVILNGRLVGYYRDG 536
Query: 532 SEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNIS-- 589
E+ K + RR I D++ VG++ +++ + RP+ +S
Sbjct: 537 EELAKKIRERRR-----NGEISDEVNVGHIVTDFINE---VHVNCDSGRVRRPLIIVSNG 588
Query: 590 --------LPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPA------THEEIHPT 635
+ +S +I Q +E + + G P+ TH EI
Sbjct: 589 NPLVTREDIEKLDSGSITFDDLVRQGKIEYLDAEEEENGYVALEPSDLTPEHTHLEIWSP 648
Query: 636 GMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRT 695
+L + A++ PY +HNQSPRN YQ MAKQ +G + R D + + L PQ P+V+T
Sbjct: 649 AILGITASIIPYPEHNQSPRNTYQSAMAKQALGLYAANYQLRTDTRAHLLHYPQRPLVQT 708
Query: 696 NTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHG---QIYQTETID- 751
G P G NAI+AV+++TGY+MED++I+N+SSV+RGM ++Y TE +
Sbjct: 709 RALDIIGYTNRPAGNNAILAVISFTGYNMEDSIIMNRSSVERGMYRSTFFRLYSTEEVKY 768
Query: 752 ---------LSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYD 802
+ + G + +G++ +R +D + ++ G + + P +
Sbjct: 769 PGGQEDKIVMPEPGVRGYKGKEYYRLLEDNGVVSPEVEVKGGDVLIGKVSPPRFLQEFKE 828
Query: 803 KTTNSWRTNSR---KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHG 859
+ + ++ + E VD V + N + +R R R P IGDKF+SRHG
Sbjct: 829 LSPEQAKRDTSIVTRHGEMGIVDLVLITETAEGN--KLVKVRVRDLRVPSIGDKFASRHG 886
Query: 860 QKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
QKGV L P +DMP++ V G+ PD+I+NPHA PSRMT+ ++E +A K
Sbjct: 887 QKGVIGMLIPQVDMPYT-VKGVVPDIILNPHALPSRMTLGQIMEGIAGK 934
>gi|238596601|ref|XP_002394094.1| hypothetical protein MPER_06071 [Moniliophthora perniciosa FA553]
gi|215462579|gb|EEB95024.1| hypothetical protein MPER_06071 [Moniliophthora perniciosa FA553]
Length = 323
Score = 232 bits (591), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 124/304 (40%), Positives = 190/304 (62%), Gaps = 15/304 (4%)
Query: 173 LGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCC-YDEKYKKEKGAVGSPLVSERVKI 231
L F + +EY++P+ + LKALV+ +D EIF + YD + +S RV++
Sbjct: 2 LRFSWRKQEYVIPIMLFLKALVNASDREIFEGIMMQDYDNTF-----------LSGRVEL 50
Query: 232 ILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKFN 291
+L ++ T QCL+++G+ F+ V+ + AV +++ + VHL + DK+
Sbjct: 51 LLRSFTVFTMRTGDQCLEYLGDKFRVVLGVPGDWTNAAVGAYLLQKLVLVHLENPRDKYR 110
Query: 292 LLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEI 351
+L+FML+KL+SLV +DNPDS Q+QE+LLPG L ++ +KE+LE+ L + + I ++
Sbjct: 111 MLLFMLRKLYSLVSGACCADNPDSPQHQEVLLPGTLYSMIIKERLEEILNQIRTQIDRDV 170
Query: 352 ENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAER 411
+ K DF + +KV+ + + +G + L TG L + TGLDLQQ +G+T +
Sbjct: 171 RDE-KVVDFNDKRYFQKVLSR-VNFDVGAKLANFLATGNLVSPTGLDLQQASGFTQLFRK 228
Query: 412 LNFL-RFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTC 470
+ R+IS FR +HRGA FA L+TT+VRKLLPE+WGFLCPVHTPDG PCGLLNH+ TC
Sbjct: 229 SSIAQRYISHFRCIHRGAFFAELKTTTVRKLLPEAWGFLCPVHTPDGSPCGLLNHLARTC 288
Query: 471 RVAS 474
R+ +
Sbjct: 289 RIVT 292
>gi|378755195|gb|EHY65222.1| DNA-directed RNA polymerase II subunit RPB2 [Nematocida sp. 1
ERTm2]
Length = 1137
Score = 231 bits (590), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 231/880 (26%), Positives = 381/880 (43%), Gaps = 97/880 (11%)
Query: 67 ERFNFGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRS-------- 118
+R G P+ML++ C D + + ++E + GGYFI+NG E+V +
Sbjct: 127 KRMPIGSIPIMLRSLYCVYSNTDDKDMNRIEECTYDQGGYFIVNGSEKVLIAHERMASNL 186
Query: 119 VILPKQNYPMSMVRSSFRDRREGYTDK---AVVIRCVRKDQSSVTLKLYYLLNGSVRLGF 175
V + K+ P + ++ + + ++ IR V + + + Y+L
Sbjct: 187 VYIFKKAPPSPYLYTAEMRSVPDHGLRLPSSLTIRLVARSSDNASGGGYFLRA------- 239
Query: 176 WLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAE 235
L + +PV ++ +AL +D EI H+ CYD E ++ P + E I
Sbjct: 240 LLPHAKQDVPVVVIFRALGFVSDKEILEHI--CYDFS-DTEMLSMLRPSIEEAFVI---- 292
Query: 236 VQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDN----NDKFN 291
QD + L +IG+ P G E A+ + + H+ K
Sbjct: 293 -QDQGVA-----LDYIGKRVAPA--GFSKEKRIKFAKDLFQREFLPHVGTKEFCETKKAY 344
Query: 292 LLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEI 351
LL + + KL + ++ D + + L G L+ + + + K +Q I
Sbjct: 345 LLGYTINKLLMVALGRRSEEDRDHYGRKRLDLAGPLMAGLFRMLFKKMSNELAKYMQRCI 404
Query: 352 ENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAER 411
+ N D + ++ + + + L TG Q+ +Q RAG R
Sbjct: 405 DGNK---DLNLIVGLR-------TSTLTNGLRYSLATGNWGEQSK-SMQARAGVAQVLNR 453
Query: 412 LNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCR 471
N++ +S R V+ G + R+L WG +CP TP+G+ CGL+ +
Sbjct: 454 YNYISTLSHLRRVNTPIGRDG-KLAKPRQLHSSHWGMVCPAETPEGQACGLVKNFALMSH 512
Query: 472 VASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPS 531
++ +S SI+ L+ + L ++ + VL++G VGV S
Sbjct: 513 ISVGSNS------------SIVVELLEECGLEGLEEVSPTAIAGATKVLVNGSWVGVHRS 560
Query: 532 -SEIEKVVAHLRRL-KVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPP------KFVR 583
++ + +LRR ++S+ I DL + ++ G LF F+
Sbjct: 561 PDDLIGTLKYLRRSGELSSEIGIVRDLREKEIRINTDGGRACRPLFIVEKGVLRIEHFLE 620
Query: 584 PVRNISLPSEE---SQNIELIGPFEQ--VFMEIRCPDGGDGGRRNAFPATHEEIHPTGML 638
R+ + +E +E + E+ + ++ D R TH EI P ML
Sbjct: 621 ANRHRAFTWDELMADGCVEFLDVEEEETAMIAVKTSDL----RNTEIMYTHCEIQPATML 676
Query: 639 SVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTY 698
V A++ P+ DHNQSPRN YQ M KQ MG R D L PQ P+V T +
Sbjct: 677 GVCASVVPFPDHNQSPRNTYQSAMGKQAMGMYATNFLMRMDSLSNVLCYPQKPLVITQSM 736
Query: 699 TKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGN- 757
E P+G NA+VA+ Y+GY+ ED++++N+ +VDRG+ Y+T + D+
Sbjct: 737 NFLQFRELPSGQNAMVAIACYSGYNQEDSVVMNRGAVDRGLFRSFFYRTYS-DMESRTKP 795
Query: 758 -------KVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWR- 809
K DR + +R K+A + +D DGL G + + T + ++
Sbjct: 796 EEQECFMKPDR--RSVQRMKNAN--YEKLDIDGLVPPGTRVSGEDVLIGKAVSTPDGYKD 851
Query: 810 -TNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLW 868
+ + +G+ES VD V + K+ + A IR R R P +GDKF+SRHGQKG +
Sbjct: 852 ASTTMRGTESGVVDRVILTTKDGY---RYARIRVRSARTPQMGDKFASRHGQKGTIGIML 908
Query: 869 PDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
DMPF+ G+ PD+IINPHA PSRMTI L+E + K
Sbjct: 909 SPEDMPFTA-DGITPDIIINPHAIPSRMTIGHLVECLLGK 947
>gi|237823479|pdb|2WAQ|B Chain B, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
gi|237823491|pdb|2WB1|B Chain B, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
gi|237823507|pdb|2WB1|R Chain R, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
gi|323462789|pdb|2Y0S|B Chain B, Crystal Structure Of Sulfolobus Shibatae Rna Polymerase In
P21 Space Group
gi|323462805|pdb|2Y0S|R Chain R, Crystal Structure Of Sulfolobus Shibatae Rna Polymerase In
P21 Space Group
gi|400260743|pdb|4AYB|B Chain B, Rnap At 3.2ang
gi|400260760|pdb|4B1O|B Chain B, Archaeal Rnap-Dna Binary Complex At 4.32ang
gi|400260780|pdb|4B1P|R Chain R, Archaeal Rnap-Dna Binary Complex At 4.32ang
gi|219814433|gb|ACL36490.1| RNA polymerase subunit 2 [Sulfolobus shibatae B12]
Length = 1131
Score = 231 bits (590), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 231/889 (25%), Positives = 386/889 (43%), Gaps = 116/889 (13%)
Query: 67 ERFNFGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNY 126
E G P+MLK+ + KL+ + E+ + GGYFI+NG ERV I+ +++
Sbjct: 115 EEVYIGDLPIMLKSAIDPISQYTLDKLIEIGEDPKDPGGYFIVNGSERV----IVTQEDL 170
Query: 127 PMSMVRSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGF-WLQGKEYLLP 185
+ V T A +I + VT++ L +G+ + F + GK +P
Sbjct: 171 APNRVLVDTGKTGSNITHTAKIISSTAGYRVPVTIE--RLKDGTFHVSFPAVPGK---IP 225
Query: 186 VGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRL 245
I+++AL D +I D + + E P + + I A V D
Sbjct: 226 FVILMRALGILTDRDIV--YAVSLDPEIQNEL----FPSLEQASSI--ANVDD------- 270
Query: 246 QCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHL----NDNNDKFNLLIFMLQKLF 301
L IG V G + E+ A+ +I Y HL +D K L + + K+
Sbjct: 271 -ALDFIGSR---VAIGQKRENRIEKAQQIIDKYFLPHLGTSADDRRKKAYYLAYAISKVI 326
Query: 302 SLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFF 361
L D+ D N+ + L G L + + +++ ++ + G+K
Sbjct: 327 ELYLGRREPDDKDHYANKRLRLAGDLFASLFRVAFKAFVKDLTYQLEKS-KVRGRKLALK 385
Query: 362 NLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFF 421
L V E+ R A TG + R G + +R N+L +S
Sbjct: 386 ALVRPDIVTERI----------------RHALATGNWVGGRTGVSQLLDRTNWLSMLSHL 429
Query: 422 RAVHRGASFA-GLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRG 480
R V +S A G R L WG +CP TP+G GL+ ++ ++A + +
Sbjct: 430 RRVI--SSLARGQPNFEARDLHGTQWGRMCPFETPEGPNSGLVKNLALMAQIAVGINEK- 486
Query: 481 NIRDFSKMRTSILRVLIGVGMIPS---LPKLVKSGPP-----AVLSVLLDGRVVGVI-PS 531
+ + L +G++P + ++ + G V+L+GR+VG
Sbjct: 487 ----------IVEKTLYEMGVVPVEEVIRRVTEGGEDQNEYLKWSKVILNGRLVGYYRDG 536
Query: 532 SEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISL- 590
E+ K + RR I D++ VG++ +++ + RP+ +S
Sbjct: 537 EELAKKIRERRR-----KGEISDEVNVGHIVTDFINE---VHVNCDSGRVRRPLIIVSNG 588
Query: 591 -PSEESQNIELIGP----FEQVFMEIRCPDGGDGGRRNAFPA----------THEEIHPT 635
P ++IE + F+ + + + NA+ A TH EI
Sbjct: 589 NPLVTREDIEKLDSGSITFDDLVRQGKIEYLDAEEEENAYVALEPSDLTPEHTHLEIWSP 648
Query: 636 GMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRT 695
+L + A++ PY +HNQSPRN YQ MAKQ +G + R D + + L PQ P+V+T
Sbjct: 649 AILGITASIIPYPEHNQSPRNTYQSAMAKQALGLYAANYQLRTDTRAHLLHYPQRPLVQT 708
Query: 696 NTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHG---QIYQTETID- 751
G P G NAI+AV+++TGY+MED++I+N+SSV+RGM ++Y TE +
Sbjct: 709 RALDIIGYTNRPAGNNAILAVISFTGYNMEDSIIMNRSSVERGMYRSTFFRLYSTEEVKY 768
Query: 752 ---------LSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYD 802
+ + G + +G++ +R +D + ++ G + + P +
Sbjct: 769 PGGQEDKIVMPEPGVRGYKGKEYYRLLEDNGVVSPEVEVKGGDVLIGKVSPPRFLQEFKE 828
Query: 803 KTTNSWRTNSR---KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHG 859
+ + ++ + E VD V + N + +R R R P IGDKF+SRHG
Sbjct: 829 LSPEQAKRDTSIVTRHGEMGIVDLVLITETAEGN--KLVKVRVRDLRIPSIGDKFASRHG 886
Query: 860 QKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
QKGV L P +DMP++ V G+ PD+I+NPHA PSRMT+ ++E +A K
Sbjct: 887 QKGVIGMLIPQVDMPYT-VKGVVPDVILNPHALPSRMTLGQIMEGIAGK 934
>gi|384245445|gb|EIE18939.1| RNA polymerase II second largest subunit [Coccomyxa subellipsoidea
C-169]
Length = 1170
Score = 231 bits (590), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 223/909 (24%), Positives = 379/909 (41%), Gaps = 143/909 (15%)
Query: 71 FGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSM 130
G+ P+ML++ C L +Q+L L E + GGYF++NG E+V ++ ++ +
Sbjct: 150 IGEVPIMLRSSYCSLHERTNQQLTQLGECPYDQGGYFVVNGSEKV----LIAQERMANNQ 205
Query: 131 VRSSFRDRREGYTDKA---VVIRCVRKDQSSVTLKLYYLLNG----SVRLGF-WLQGKEY 182
V + + Y +A V+ ++ SS+++++ G ++R +++
Sbjct: 206 VYVFRKSQPSKYAYQAECRSVVENSTRNTSSMSIRMLARSGGKGGQAIRATLPYIRAD-- 263
Query: 183 LLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLT 242
+P+ I+ +AL T D +I H+ +++ E P + E I EV
Sbjct: 264 -IPILIIFRALGLTADKDILQHVVYDFNDTAMME---ALRPSIEEAFPIQTQEV------ 313
Query: 243 TRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLN----DNNDKFNLLIFMLQ 298
L IG+ G+ E A +++ + H+ K +M+
Sbjct: 314 ----ALDFIGKRGSN--PGVTREKRIHYARDILQREMLPHVAIGEFSETKKAYFFGYMVH 367
Query: 299 KLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKF 358
+L + D+ D N+ + L G L+ ++ + + +Q + + GK+
Sbjct: 368 RLLLVALGRRDQDDRDHYCNKRLDLGGPLLANLFRQLFRKLTKDVRSHVQKAV-DRGKEI 426
Query: 359 DFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFI 418
+ N I + + TG Q + RAG + RL + +
Sbjct: 427 NLMAAVN---------KDTITRGLRYSIATGNWGMQGTAGM--RAGVSQVLNRLTYASTL 475
Query: 419 SFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDS 478
S R + G + R+L WG +CP TP+G+ CGL+ ++ + SY
Sbjct: 476 SHLRRISSPIGREG-KLAKPRQLHNSQWGVICPAETPEGQACGLVKNLA----LMSY--- 527
Query: 479 RGNIRDFSKMRTSILRVLIGVGMIP--------SLPKLVKSGPPAVLS---VLLDGRVVG 527
V +G P S L + P +L V ++G VG
Sbjct: 528 ----------------VSVGCPSAPIGEFLEEWSTENLEEINPSVILEATKVFVNGVWVG 571
Query: 528 V--IPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPV 585
+ P+ + + R++ +S I D+ + L L+T + RP+
Sbjct: 572 IHRQPAVLVNTLRKMRRQVDISTEVGIVHDIRL-----------QELRLYTDYGRCCRPL 620
Query: 586 -------RNISLPSEESQN-------------------IELIGPFEQ----VFMEIRCPD 615
+ +++ ++ + IE I E+ + MEI+ +
Sbjct: 621 FIVDPDRKRLTITKDDIRQLQEREVTHFGWNELVHKGCIEYIDTEEEETTMIAMEIKDLE 680
Query: 616 GGDGGRRNAFPAT--HEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQA 673
R A+ T H EIHP+ +L V A++ P+ DHNQSPRN YQ M KQ MG V
Sbjct: 681 NARTPGRVAYSETYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGMYVTN 740
Query: 674 LKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKS 733
+ R D + Y L PQ P+V T E P G N IVA+ Y+GY+ ED++++N+S
Sbjct: 741 YQTRMDTQAYVLYYPQKPLVTTRAMEHLHFRELPAGQNTIVAIACYSGYNQEDSLMMNQS 800
Query: 734 SVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSV---IDSDGLP----- 785
S+DRG ++T + G+ V ++ R+ H +D DG+
Sbjct: 801 SIDRGFFRSMFFRTYRAEEKKQGSLVQEVIEVPDRSVTVAMRHGTYDKLDDDGIAPPGTR 860
Query: 786 ------YVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKAN 839
+G+ + + + + + S + SES +D V V +
Sbjct: 861 VSGEDVIIGKTSPLADEQPGVAQRFSKKDVSTSLRNSESGMIDQVMVTTNAEGQ--RFVK 918
Query: 840 IRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIA 899
IR R R P +GDKF+SRHGQKG + DMP++ G+ PDLIINPHA PSRMTI
Sbjct: 919 IRVRSIRIPQVGDKFASRHGQKGTIGMTYTQEDMPWTS-EGIVPDLIINPHAIPSRMTIG 977
Query: 900 MLLESVAAK 908
L+E++ +K
Sbjct: 978 HLVEALMSK 986
>gi|5514652|emb|CAA29180.2| RNA polymerase [Drosophila melanogaster]
Length = 1123
Score = 231 bits (589), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 253/955 (26%), Positives = 409/955 (42%), Gaps = 154/955 (16%)
Query: 34 MFDHCRQAKISYTGKLMADV-EFQYLDAGSPV--VRERFNFGQFPVMLKTRRCHLQGADS 90
M + R ++Y+ L D+ + + ++ PV ++ G+ P+ML++ C L
Sbjct: 57 MPNEARLRNLTYSAPLYVDITKTKNVEGLDPVETQHQKTFIGKIPIMLRSTYCLLSQLTD 116
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
+ L L E + GGYFI+NG E+V +I ++ ++ S +D + Y K +
Sbjct: 117 RDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFSMKDGK--YAFKTEIRS 171
Query: 151 CVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
C+ + + TL + + GS + G+ + +P+ IV +AL D +
Sbjct: 172 CLEHSSRPTSTLWVNMMARGSQNIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRD 231
Query: 201 IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAE---VQDLSLTTRLQCLQHIGEHFQP 257
I H+ +D+ P + E VK L E VQ+ ++ L IG +
Sbjct: 232 ILEHIIYDFDD-----------PEMMEMVKPSLDEAFVVQEQNVA-----LNFIGA--RG 273
Query: 258 VIDGLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNP 313
G+ + A+ +++ + H+ ++ K L +M+ +L D+
Sbjct: 274 ARPGVTKDKRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDR 333
Query: 314 DSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKN 373
D N+ + L G L+ + ++ +++ + Q I+ GK F N++ ++ N
Sbjct: 334 DHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYTQKFIDR-GKDF------NLELAIKTN 386
Query: 374 PSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGL 433
I + L TG Q Q RAG + RL F +S R V+ G
Sbjct: 387 I---ITDGLRYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRVNSPIGRDG- 441
Query: 434 RTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSIL 493
+ R+L WG LCP TP+G GL+ ++ ++ + IL
Sbjct: 442 KLAKPRQLHNTLWGMLCPAETPEGAAVGLVKNLALMAYIS-----------VGSQPSPIL 490
Query: 494 RVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VS 547
L M +L ++ S + ++G VG+ + E+++A LR+L+ VS
Sbjct: 491 EFLEEWSM-ENLEEIAPSAIADATKIFVNGCWVGI--HRDPEQLMATLRKLRRQMDIIVS 547
Query: 548 AASVIPD--DLEVGYVPLSLGGAYPGLYLFTSPPKFVRP---VRNISLPSEESQNIELIG 602
S+I D D E+ ++T + RP V N SL +++ ++E++
Sbjct: 548 EVSMIRDIRDREI--------------RIYTDAGRICRPLLIVENGSLLLKKT-HVEMLK 592
Query: 603 PF-----------------------EQVFMEIRCPDGGDGGRRNAFPAT--HEEIHPTGM 637
E+ M P + A+ T H EIHP +
Sbjct: 593 ERDYNNYSWQVLVASGVVEYMYTLEEETVMIAMSPYDLKQDKDYAYCTTYTHCEIHPAMI 652
Query: 638 LSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNT 697
L V A++ P+ DHNQSPRN YQ M KQ MG + R D + L P P+V T +
Sbjct: 653 LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPMKPLVTTRS 712
Query: 698 YTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT-------ETI 750
E P G N+IVA+L YTGY+ ED++ILN S+V+RG Y++
Sbjct: 713 MEYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDSENKRVG 772
Query: 751 DLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKT------ 804
D ++ K RG RN L D DG+ G + + + KT
Sbjct: 773 DQEENFEKPHRGTCQGMRNAHYDKL----DDDGIIAPGIRVSGDD---VVIGKTITLPEN 825
Query: 805 -----TNSWRTNSR------KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDK 853
+N+ R + R + SE+ VD V + + NS+ + IR R R P IGDK
Sbjct: 826 DDELDSNTKRFSKRDASTFLRNSETGIVDQVMLTL-NSEGY-KFCKIRVRSVRIPQIGDK 883
Query: 854 FSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
F+SRHGQKG C + DM F+ G+ PD+IINPHA PSRMTI L+E + K
Sbjct: 884 FASRHGQKGTCGIQYRQEDMAFT-CEGLAPDIIINPHAIPSRMTIGHLIECLQGK 937
>gi|195064711|ref|XP_001996619.1| GH19704 [Drosophila grimshawi]
gi|193892751|gb|EDV91617.1| GH19704 [Drosophila grimshawi]
Length = 1175
Score = 231 bits (589), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 252/954 (26%), Positives = 405/954 (42%), Gaps = 152/954 (15%)
Query: 34 MFDHCRQAKISYTGKLMADV-EFQYLDAGSPV--VRERFNFGQFPVMLKTRRCHLQGADS 90
M + R ++Y+ L D+ + + ++ PV ++ G+ P+ML++ C L
Sbjct: 109 MPNEARLRNLTYSAPLYVDITKTKNVEGLDPVETQHQKTFIGKIPIMLRSTYCLLSQLTD 168
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
+ L L E + GGYFI+NG E+V +I ++ ++ S +D + Y K +
Sbjct: 169 RDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFSMKDGK--YAFKTEIRS 223
Query: 151 CVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
C+ + + TL + + GS + G+ + +P+ IV +AL D +
Sbjct: 224 CLEHSSRPTSTLWVNMMARGSQNIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRD 283
Query: 201 IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAE---VQDLSLTTRLQCLQHIGEHFQP 257
I H+ +D+ P + E VK L E VQ+ ++ L IG +
Sbjct: 284 ILEHIIYDFDD-----------PEMMEMVKPSLDEAFVVQEQNVA-----LNFIGA--RG 325
Query: 258 VIDGLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNP 313
G+ + A+ +++ + H+ ++ K L +M+ +L D+
Sbjct: 326 ARPGVTKDKRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDR 385
Query: 314 DSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKN 373
D N+ + L G L+ + ++ +++ + Q I+ GK F N++ ++ N
Sbjct: 386 DHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYTQKFIDR-GKDF------NLELAIKTN 438
Query: 374 PSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGL 433
I + L TG Q Q RAG + RL F +S R V+ G
Sbjct: 439 I---ITDGLRYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRVNSPIGRDG- 493
Query: 434 RTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSIL 493
+ R+L WG LCP TP+G GL+ ++ ++ + IL
Sbjct: 494 KLAKPRQLHNTLWGMLCPAETPEGAAVGLVKNLALMAYIS-----------VGSQPSPIL 542
Query: 494 RVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VS 547
L M +L ++ S + ++G VG+ + E+++A LR+L+ VS
Sbjct: 543 EFLEEWSM-ENLEEIAPSAIADATKIFVNGCWVGI--HRDPEQLMATLRKLRRQMDIIVS 599
Query: 548 AASVIPD--DLEVGYVPLSLGGAYPGLYLFTSPPKFVRPV------------RNISLPSE 593
S+I D D E+ ++T + RP+ ++ + E
Sbjct: 600 EVSMIRDIRDREI--------------RIYTDAGRICRPLLIVENGTLLLKKTHVEMLKE 645
Query: 594 ESQN------------IELIGPFEQ-VFMEIRCPDGGDGGRRNAFPAT--HEEIHPTGML 638
N +E I E+ M P + A+ T H EIHP +L
Sbjct: 646 RDYNNYSWQVLVASGVVEYIDTLEEETVMIAMSPYDLKQDKDYAYCTTYTHCEIHPAMIL 705
Query: 639 SVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTY 698
V A++ P+ DHNQSPRN YQ M KQ MG + R D + L P P+V T +
Sbjct: 706 GVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPMKPLVTTRSM 765
Query: 699 TKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT-------ETID 751
E P G N+IVA+L YTGY+ ED++ILN S+V+RG Y++ D
Sbjct: 766 EYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDSENKRVGD 825
Query: 752 LSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKT------- 804
++ K RG RN L D DG+ G + + + KT
Sbjct: 826 QEENFEKPHRGTCQGMRNAHYDKL----DDDGIIAPGIRVSGDD---VVIGKTITLPEND 878
Query: 805 ----TNSWRTNSR------KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKF 854
+N+ R R + SE+ VD V + + NS+ + IR R R P IGDKF
Sbjct: 879 DELDSNTKRFAKRDASTFLRNSETGIVDQVMLTL-NSEGY-KFCKIRVRSVRIPQIGDKF 936
Query: 855 SSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
+SRHGQKG C + DM F+ G+ PD+IINPHA PSRMTI L+E + K
Sbjct: 937 ASRHGQKGTCGIQYRQEDMAFT-CEGLAPDIIINPHAIPSRMTIGHLIECLQGK 989
>gi|169806505|ref|XP_001827997.1| DNA-directed RNA polymerase [Enterocytozoon bieneusi H348]
gi|161779137|gb|EDQ31162.1| DNA-directed RNA polymerase [Enterocytozoon bieneusi H348]
Length = 1138
Score = 231 bits (589), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 236/924 (25%), Positives = 405/924 (43%), Gaps = 120/924 (12%)
Query: 36 DHCRQAKISYTGKLMADVEFQYLDAGSPVVRE---RFNFGQFPVMLKTRRCHLQGADSQK 92
+ R ++Y + DV+ Y + G V R FG PVM+K+ C L+ + +
Sbjct: 104 NEARLRDLTYWVNMFIDVKKAYYENGIEVDVSKTIRVPFGSLPVMVKSELCALKELNDKD 163
Query: 93 LVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCV 152
+ L E + GGYFI+ G E+ VI+ ++ +MV + + YT A IR V
Sbjct: 164 NIRLGECPYDQGGYFIITGGEK----VIVAQERIATNMVHIFKKSQPAPYTYFA-EIRSV 218
Query: 153 RKDQSSV----TLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCC 208
+ S + +LK+ L +R L ++ +PV I+ +AL +D EI +++
Sbjct: 219 AEIGSKLPSIFSLKVVKNLR-VIRASINLVKQD--IPVLIIFRALGFNSDKEILSYI--- 272
Query: 209 YDEKYKKEKGAVGSPLVSERVKIILAEVQDLS-LTTRLQCLQHIGEHFQPVIDGLQSESY 267
+Y +K E + +L +++ S + +L L IG+ P+ G
Sbjct: 273 ---QYDNDK---------ELNEYLLNSLEEASCIQDQLSALDFIGKRSAPI--GSPKSKR 318
Query: 268 YAVAETVIRDYIFVHLNDN----NDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILL 323
A+ ++ H+ K L +M+ K+ ++ D+ D + + L
Sbjct: 319 IDFAKQILIKEFLPHIGQQEFCETKKAYFLGYMINKILLVITGKRDVDDRDHYGKKRMDL 378
Query: 324 PGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIE 383
G L+ K + L + K +Q +ENN + FNL K S I +
Sbjct: 379 SGPLLANLFKVLFKKLLTETTKYLQKCVENNRE----FNLTIGLK------SSIITQGFK 428
Query: 384 TMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLP 443
L TG Q + RAG R NFL +S R V+ G + + R+L
Sbjct: 429 YALATGNWGHQEKA-MSTRAGVAQVLSRYNFLSTLSHLRRVNTPIEKEG-KLAAPRQLHN 486
Query: 444 ESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL--IGVGM 501
WG +CP+ TP+G CGL+ +++ ++ K I+ +L +GV
Sbjct: 487 THWGMICPIETPEGHACGLVKNLSLMAYIS-----------VGKSSNQIIEILEELGVER 535
Query: 502 IPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK----VSAASVIPDDLE 557
+ + + + +L++G +GV +S+ ++V L++ + + + I D++
Sbjct: 536 LEEIEYIYGT------KILVNGAWIGV--TSDPVRIVQILKKFRRHGEIDSEISIIFDIK 587
Query: 558 VGYVPLSLGGAYPGLYLFTSP-------PKFVRPVRNISLPSEE-SQNIELIGPFEQVFM 609
+ ++ P LF + + ++NI + ++ +N ++ +
Sbjct: 588 ENEIKINSDAGRPCRPLFIVENNELLVNKQDIEDLKNIKIKWDDLIKNGKIELLDIEEEE 647
Query: 610 EIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGF 669
G + + TH EIHP +L + A++ P+ HN SPRN YQ M KQ MG
Sbjct: 648 VSLIAMGLNDLKDTNKQYTHCEIHPAIILGITASVIPFPTHNPSPRNTYQSAMGKQAMGI 707
Query: 670 SVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMI 729
R D L PQ P+V T + E P+G N IVA+ Y+GY+ ED++I
Sbjct: 708 YSTNFFKRMDTLSNILCYPQKPLVSTKSMEYIKFKELPSGQNCIVAIACYSGYNQEDSII 767
Query: 730 LNKSSVDRGMCHGQIYQT----ETIDLSDDGNKVDRGQK--LFRRNKDAKSLHSVIDSDG 783
+N++S+DRG+ +++T E + + K+ + ++ +FR K+ + ++ +DG
Sbjct: 768 MNQASIDRGLFRSFLFRTYSDQEKMKYTGVNEKICKIERSVIFRPKKNN---YDILGNDG 824
Query: 784 LPYVGQMIH-------------------PGEPYCSIYDKTTNSWRTNSRKGSESVFVDYV 824
+ G ++ PG P+ D +T +T E +D V
Sbjct: 825 IVCPGTQVYGDDVIIGKMTPILDVEKSTPGNPFYLFKDTSTLIRKT------EQGNIDKV 878
Query: 825 AVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPD 884
V K+ + ++ R R P +GDKF+SRH QKGV DMPF+ G+ PD
Sbjct: 879 IVTTKDGYKFTK---VKVRSMRIPQMGDKFASRHAQKGVVGITLKQEDMPFTS-DGLIPD 934
Query: 885 LIINPHAFPSRMTIAMLLESVAAK 908
+IINPHA PSRMTI L E++ K
Sbjct: 935 VIINPHAIPSRMTIGHLFEALLGK 958
>gi|324120624|dbj|BAJ78703.1| RNA polymerase II second largest subunit [Nomadacris japonica]
Length = 1173
Score = 231 bits (589), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 245/947 (25%), Positives = 409/947 (43%), Gaps = 138/947 (14%)
Query: 34 MFDHCRQAKISYTGKLMADV---EFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADS 90
M + R ++Y+ L D+ ++ + + ++ G+ P+ML++ C L
Sbjct: 107 MPNEARLRNLTYSAPLYVDILKRVEKHKEEPVETLHQKTFIGKIPIMLRSTYCLLSTLTD 166
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
+ L L E + GGYFI+NG E+V +I ++ ++ S +D + Y KA +
Sbjct: 167 RDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFSMKDGKYAY--KAEIRS 221
Query: 151 CVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
C+ + + TL + + G + G+ + +P+ I +AL D +
Sbjct: 222 CLEHSSRPTSTLWVNMMARGGQSIKKSAIGQRIVAILPYIKQEIPIIIAFRALGFVADRD 281
Query: 201 IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAE---VQDLSLTTRLQCLQHIGEHFQP 257
I H+ +D+ P + E VK L E VQ+ ++ L IG +
Sbjct: 282 ILEHIIYDFDD-----------PEMMEMVKPSLDEAFVVQEQNVA-----LNFIGT--RG 323
Query: 258 VIDGLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNP 313
G+ E A +++ + H+ ++ K L +M+ +L D+
Sbjct: 324 ARPGVTKERRIKYAREILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDR 383
Query: 314 DSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKN 373
D N+ + L G L+ + ++ +++ + Q I + GK F+ LA IK
Sbjct: 384 DHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYAQKFI-DRGKDFNL-ELA-IK------ 434
Query: 374 PSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGL 433
+K I + L TG Q Q RAG + RL F +S R V+ G
Sbjct: 435 -TKIITDGLRYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRVNSPIGRDG- 491
Query: 434 RTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSIL 493
+ R+L WG +CP TP+G GL+ ++ ++ + IL
Sbjct: 492 KLAKPRQLHNTLWGMICPAETPEGAAVGLVKNLALMAYIS-----------VGSQPSPIL 540
Query: 494 RVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VS 547
L M +L ++ S + ++G VG+ + E+++A LR+L+ VS
Sbjct: 541 EFLEEWSM-ENLEEIAPSAIADATKIFVNGCWVGI--HRDPEQLMATLRKLRRQMDIIVS 597
Query: 548 AASVIPD--DLEVGYVPLSLGGAYPGLYLFTSPPKFVRPV------------RNISLPSE 593
S+I D D E+ ++T + RP+ R+I E
Sbjct: 598 EVSMIRDIRDREI--------------RIYTDAGRICRPLLIVENGSLLLKKRHIDRLKE 643
Query: 594 ESQN------------IELIGPFEQ-VFMEIRCPDGGDGGRRNAFPATHE--EIHPTGML 638
+ +E I E+ M D + A+ +TH EIHP +L
Sbjct: 644 RDYDNYGWQMLVAEGVVEYIDTLEEETVMIAMSLDDLRHDKSYAYCSTHTHCEIHPAMIL 703
Query: 639 SVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTY 698
V A++ P+ DHNQSPRN YQ M KQ MG + R D + L P P+V T +
Sbjct: 704 GVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSM 763
Query: 699 TKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT-ETIDLSDDGN 757
E P G N++VA+L YTGY+ ED++I+N S+V+RG +++ + + G+
Sbjct: 764 EYLRFRELPAGINSVVAILCYTGYNQEDSVIMNASAVERGFFRSVFFRSYKDAESKRIGD 823
Query: 758 KVDRGQKLFRRNKDA--KSLHSVIDSDGL-----------PYVGQMIHPGEPYCSIYDKT 804
+ ++ +K R+ +L+ +D DG+ +G+ I + + T
Sbjct: 824 QEEQFEKPTRQTCQGMRNALYDKLDDDGIISPGIRVSGDDVVIGKTITLPDNEDELEGTT 883
Query: 805 TNSWRTNSR---KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQK 861
+ ++ + SE+ VD V + + NS+ + IR R R P IGDKF+SRHGQK
Sbjct: 884 KRYTKRDASTFLRNSETGIVDQVMLTL-NSEGY-KFCKIRVRSVRIPQIGDKFASRHGQK 941
Query: 862 GVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
G C + DMPF+ G+ PD+IINPHA PSRMTI L+E + K
Sbjct: 942 GTCGIQYRQEDMPFT-CEGITPDIIINPHAIPSRMTIGHLIECLQGK 987
>gi|360044299|emb|CCD81846.1| putative dna-directed rna polymerase II subunit [Schistosoma
mansoni]
Length = 1158
Score = 231 bits (588), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 232/917 (25%), Positives = 377/917 (41%), Gaps = 119/917 (12%)
Query: 57 YLDAGSPVVRERFN---------FGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYF 107
Y+D ++R+ G+ P+ML++ C L + L L E + GGYF
Sbjct: 105 YVDVMKKIIRDEIEEEKPLEKKFIGKIPIMLRSTYCLLSVMSDRDLAELNECPLDPGGYF 164
Query: 108 ILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVR-KDQSSVTLKLYYL 166
I+NG E+V L Q + F+ + Y K + C+ + + TL + +
Sbjct: 165 IINGSEKV-----LIAQEKMATNTVYVFKQKDSKYAYKTEIRSCLEHSSRPASTLWINMM 219
Query: 167 LNGS----------VRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKE 216
G R+ L + +PV IV +AL D +I H+ +D+ +E
Sbjct: 220 ARGGKDGSKRATIGQRIVAILPYIKQEIPVLIVFRALGFVADRDILEHIIYDFDDTEMRE 279
Query: 217 --KGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETV 274
K ++ V + K+ L IG + G+ E A+ +
Sbjct: 280 MIKPSLDDAFVIQEQKV---------------ALNFIGS--RGARPGVTKEKRIKYAKEI 322
Query: 275 IRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITI 330
++ H+ ++ K L +M+ +L D+ D N+ + L G L+
Sbjct: 323 LQKETLPHVGVSDFCETRKAYFLGYMVHRLLLAALKRRDVDDRDHYGNKRLDLAGPLLAF 382
Query: 331 YLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGR 390
+ + L K +L + + GK F N++ + S+ I ++ L TG
Sbjct: 383 LFRGLFRN-LTKEIRLYAQKFIDKGKDF------NLELAIR---SQIITDGLKYSLATGN 432
Query: 391 LATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLC 450
Q + Q R G + RL F +S R ++ G + R+L WG +C
Sbjct: 433 WGDQKKAN-QARPGVSQVLNRLTFASTLSHLRRLNSPIGRDG-KLARPRQLHNTLWGMIC 490
Query: 451 PVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVK 510
P TP+G GL+ ++ ++ + IL L M +L ++
Sbjct: 491 PAETPEGHAVGLVKNLALMAYIS-----------VGSQPSPILEFLEEWSM-ENLEEIAP 538
Query: 511 SGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAASVIPDDLEVGYVPLS 564
S + ++G VG+ S + ++ LR+L+ VS S+I D + +
Sbjct: 539 SAIGKTCKIFVNGCWVGI--HSSPDHLMGTLRKLRRQVDVIVSEVSMIRDYRDQEIRIYT 596
Query: 565 LGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN------------IELIGPFEQ-VFMEI 611
G + K + +I L +++ N +E I E+ M
Sbjct: 597 DAGRICRPLVIVEKGKLLLKRSHIELLKDKAYNRYSWQDLVLSGVVEYIDTLEEETVMIA 656
Query: 612 RCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSV 671
P TH EIHP+ +L + A++ P+ DHNQSPRN YQ M KQ MG +
Sbjct: 657 MGPAEMQAAVNYCKTHTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVYI 716
Query: 672 QALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILN 731
R D L PQ P+V T + E P G NAIVA+ YTGY+ ED++I+N
Sbjct: 717 SNFHTRMDTLANVLYYPQKPLVATRSMEYLRFRELPAGINAIVAIATYTGYNQEDSVIIN 776
Query: 732 KSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAK------SLHSVIDSDGLP 785
+S++ RG + Y+T + G + +++F + +++ +D DGL
Sbjct: 777 ESAIQRGFFRSEFYRTYKDQETRHGMDL---EEVFEKPNPQNCQGMRHAIYDKLDDDGLI 833
Query: 786 YVGQMIHPGEPYCSIY-------DKTTNSWRTNSRKG-------SESVFVDYVAVDMKNS 831
G + + D+ R +++ SE VD V V N
Sbjct: 834 APGTRVSGDDVLIGKTITLPENEDEMEGGQRRYTKRDASVFMRRSEYGIVDQVMVTWNNE 893
Query: 832 KNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHA 891
N + +R R T+ P +GDKF+SRHGQKG C + DMPF+ G+ PD+IINPHA
Sbjct: 894 GN--KFCKVRVRTTKAPQVGDKFASRHGQKGTCGIRYRQEDMPFT-CEGITPDIIINPHA 950
Query: 892 FPSRMTIAMLLESVAAK 908
PSRMTI L+E + K
Sbjct: 951 IPSRMTIGHLIECLQGK 967
>gi|169597943|ref|XP_001792395.1| hypothetical protein SNOG_01766 [Phaeosphaeria nodorum SN15]
gi|160707624|gb|EAT91415.2| hypothetical protein SNOG_01766 [Phaeosphaeria nodorum SN15]
Length = 1443
Score = 231 bits (588), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 239/928 (25%), Positives = 395/928 (42%), Gaps = 138/928 (14%)
Query: 36 DHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVS 95
+ CR ++Y ++ D+ Y + V R G+ P+MLK+ +C L + +++
Sbjct: 413 NECRLRDMTYAAPIVVDI--VYTRGSAKVKRTGIKIGRMPIMLKSNKCVLAAKNDREMAV 470
Query: 96 LKEEAAEMGGYFILNGLERVF---------RSVILPKQNYPMSMVRSSFRDRREGYTDKA 146
+ E + GGYFI G E+V R ++ + + V SS +RR K
Sbjct: 471 MDECPLDPGGYFITRGQEKVILVQEQLNKNRVIVESAKGIMQASVTSSTHERRT----KT 526
Query: 147 VVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLT 206
VI+ L +L + ++ +P+ VLKAL +D EI +
Sbjct: 527 YVIQ---------KKGLMFLRHNTL---------SEEVPIVFVLKALGVHSDKEIL-LMI 567
Query: 207 CCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQS-- 264
D Y+ + I + T+ + L++IG + V L +
Sbjct: 568 AGTDAAYQ------------DSFAINFEACAREGIHTQEKALEYIGHRVRLVKKPLGTSR 615
Query: 265 -ESYYAVAETVIRDYIFVHL----NDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQ 319
+Y+ A + + + H+ + K + M +++ + + D+ D + N+
Sbjct: 616 MRNYHLEAIECLANVVLPHVPVEGTNYRPKALYVALMARRVLMAMQDPKLVDDRDYVGNK 675
Query: 320 EILLPGHLITIYLKEKLEDWLRKGKKLIQDEI---ENNGKKFDFFNLANIKKVMEKNPSK 376
+ L G ++++ ++ + + KL D++ +N ++FD F+ ++ K
Sbjct: 676 RLELSGQMLSLLFEDHFKRF-NHDFKLSIDKVLKKQNRAQEFDAFSHFSVHK-------N 727
Query: 377 QIGTSIETMLKTGRLATQT-GLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRT 435
I IE + TG + + +D RAG T RL+++ + + + F R
Sbjct: 728 HITMGIERAIATGNWSLKRFKMD---RAGVTHVLSRLSYIAALGMMTRI--SSQFEKTRK 782
Query: 436 TS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILR 494
S R L P +G LC TP+GE CGL+ ++ + + D +R I
Sbjct: 783 VSGPRALQPSQFGMLCTSDTPEGEACGLVKNLALMTHITTEDDE-------DPVRKIIF- 834
Query: 495 VLIGVGMIPSLP--KLVKSGPPAVLSVLLDGRVVGV--IPSSEIEKVVAHLRRLKVSAAS 550
L+G I S ++ + G V SV L+G + + IP + R ++S
Sbjct: 835 -LLGAEEICSQTGEEIHREG---VYSVCLNGTPIAITDIPKRFLNSFRKLRRMGRISE-- 888
Query: 551 VIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVF-- 608
+ + + + +++ T + RP+ + E+Q ++ G + +
Sbjct: 889 ---------FTSIHINHDFCEVHVATDEGRICRPMIVV-----ENQRSKVTGRYLKALRK 934
Query: 609 --ME---------IRCPDGGDGGRRN-AFPATHEEIHPTGM-------LSVVANLTPYSD 649
ME + D + N A T H T + L VA L PY
Sbjct: 935 GTMEFEDFLTRGLVEYLDTNEENDTNIALKETDINQHTTHLEIEPFTILGAVAGLIPYPH 994
Query: 650 HNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTG 709
HNQSPRN YQC M KQ +G R D LY + PQ P+V+T T D+ P G
Sbjct: 995 HNQSPRNTYQCAMGKQAIGAIAYNQFSRIDTILYLMVYPQEPMVKTRTIELTKYDKLPAG 1054
Query: 710 TNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKV-DRGQKLFRR 768
NA VAV++Y+GYD+EDA+ILNK+S DRG Q+ + + L N DR +
Sbjct: 1055 QNATVAVMSYSGYDIEDALILNKASCDRGFGRCQVMKKVSHQLKSYANGTSDRINAGALK 1114
Query: 769 NKDAKSLHSVIDSDGLPYVGQMIHPGEPYC--SIYDKTTNSWRTNSRKGSESV------F 820
D H I DG+ VG I+ G+ + +I T T + E +
Sbjct: 1115 VDDPT--HQAIGQDGIAQVGARINQGDAFLLKAIPQDTAGPPSTTYKDKPEKYKLPDCSY 1172
Query: 821 VDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTG 880
+D V + + K I R TR P +GDKFSSRHGQKG + DMPF+ G
Sbjct: 1173 IDKVCITENEAGTTLIK--ILNRQTRRPELGDKFSSRHGQKGTTGLIVQQEDMPFND-QG 1229
Query: 881 MRPDLIINPHAFPSRMTIAMLLESVAAK 908
+ PD+I+NPH FPSRMT+ ++E ++ K
Sbjct: 1230 INPDIIMNPHGFPSRMTVGKMMELLSGK 1257
>gi|391332506|ref|XP_003740675.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like
[Metaseiulus occidentalis]
Length = 1178
Score = 231 bits (588), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 245/934 (26%), Positives = 396/934 (42%), Gaps = 112/934 (11%)
Query: 34 MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVR---ERFNFGQFPVMLKTRRCHLQGADS 90
M + R ++Y+ L D+ + G V ++ G+ P+ML++ C L G
Sbjct: 107 MPNEARLRNLTYSAPLYVDIIKTVIRDGEDPVETQHQKTFIGKIPIMLRSSYCLLNGLSD 166
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
+ L L E + GGYFI+NG E+V L Q + F+ + Y KA
Sbjct: 167 RDLSELNECPLDPGGYFIINGSEKV-----LIAQEKMATNTVYVFQMKDGKYAFKAECRS 221
Query: 151 CVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
C+ + + TL + + G + G+ + +P+ IV +AL D +
Sbjct: 222 CIEHSSRPTSTLWVNMMARGGSGVKKASIGQRIIAILPYIKQEIPIMIVFRALGFVADRD 281
Query: 201 IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
I H+ +++ P + E VK L E + + L IG +
Sbjct: 282 ILEHIIYDFED-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGS--RGARP 326
Query: 261 GLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
G+ + A +++ + H+ ++ K L +M+ +L D+ D
Sbjct: 327 GVTKANRIKYAREILQKEMLPHVGVSDFCETKKAYYLGYMVHRLLLAALGRRELDDRDHY 386
Query: 317 QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
N+ + L G L+ + ++ L K ++ + + GK F+ LA IK ++
Sbjct: 387 GNKRLDLAGPLMAFLFRGLFKN-LTKEVRMFAQKFIDKGKDFNL-ELA-IK-------TR 436
Query: 377 QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
I ++ L TG Q Q R G + RL + +S R V+ G +
Sbjct: 437 IITDGLKYSLATGNWGDQKKAH-QARPGVSQVLNRLTYASTLSHLRRVNSPIGRDG-KLA 494
Query: 437 SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
R+L WG +CP TP+G GL+ ++ + SY + IL L
Sbjct: 495 KPRQLHNTLWGMICPAETPEGHAVGLVKNLA----LMSYIS-------VGSQPSPILEFL 543
Query: 497 IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAAS 550
M +L ++ S + ++G VG+ + E+++ L++L+ VS S
Sbjct: 544 EEWSM-ENLEEIAPSAIAEATKIFVNGCWVGI--HRDPEQLMLTLQKLRRQMDIIVSEVS 600
Query: 551 VIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEE------------SQNI 598
++ D + + G L K + +I E S +
Sbjct: 601 MVRDIRDREIRIYTDAGRICRPLLIVENQKLLLKRHHIDKLKERECSYYSWQDLVASGVV 660
Query: 599 ELIGPFEQ-VFMEIRCPDGGDGGRRNAFPAT--HEEIHPTGMLSVVANLTPYSDHNQSPR 655
E I E+ M PD + A+ +T H EIHP+ +L V A++ P+ DHNQSPR
Sbjct: 661 EYIDTLEEETVMLAMTPDDLTQDKALAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPR 720
Query: 656 NMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVA 715
N YQ M KQ MG + R D + L P P+ T + E P G NAIVA
Sbjct: 721 NTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPHKPLTTTRSMEYLRFRELPAGINAIVA 780
Query: 716 VLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKV--DRGQKLFRRNKDA- 772
+++YTGY+ ED++ILN S+VDRG Y++ D NK D+ + + ++
Sbjct: 781 IMSYTGYNQEDSVILNASAVDRGFFRSVFYRS----YKDSENKRMGDQEETFEKPTRETC 836
Query: 773 ----KSLHSVIDSDGLPYVGQMIHPGE----PYCSIYDKTTNSWRTNSR----------K 814
+++ +D DG+ G + + ++ + + TN R +
Sbjct: 837 QGMRNAIYDKLDDDGIIAPGTRVSGDDVIIGKTITLPENDDDLDSTNKRYSKRDASTFLR 896
Query: 815 GSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMP 874
SE+ VD V + + NS + IR R R P IGDKF+SRHGQKG C + DMP
Sbjct: 897 NSETGIVDQVMLTI-NSDGY-KFCKIRVRSVRIPQIGDKFASRHGQKGTCGVTYRQEDMP 954
Query: 875 FSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
F+ V G+ PD+IINPHA PSRMTI L+E + K
Sbjct: 955 FT-VEGLTPDIIINPHAIPSRMTIGHLIECLQGK 987
>gi|342185198|emb|CCC94681.1| unnamed protein product, partial [Trypanosoma congolense IL3000]
Length = 730
Score = 231 bits (588), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 171/533 (32%), Positives = 261/533 (48%), Gaps = 70/533 (13%)
Query: 434 RTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYY--DSRGNIRDFSKMRTS 491
R++ VRK E +GFLC VH+PDGE CG+LNH++ + +S + DS + + ++
Sbjct: 1 RSSEVRKYPCEGYGFLCMVHSPDGEDCGVLNHLSLSTVFSSSFPADSSQQMSLLASIQEE 60
Query: 492 ILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------ 545
+ V + + +L+ + P V L+G+++G I E V L R K
Sbjct: 61 LKDVRNFSSLASIVDQLIDTVP-----VWLEGKMIGYIEPKAAEGVARTLLRKKLIKSRS 115
Query: 546 -VSAASVIP-------DDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQ- 596
V A ++ + +EV Y+P PGLY+F S + +RPV I S +
Sbjct: 116 AVDATGMVRRCKLGPLNTVEVIYIPPGSKDP-PGLYIFYSYGRLMRPVLQIVSESHDKDI 174
Query: 597 --NIELIGPFEQVFMEIRC--PDGGDGGRRNAFPATHEEIHPTG--MLSVVANLTPYSDH 650
+ +G +EQ + +I D DG ++ T+E + TG +LS+ ++ P+ +H
Sbjct: 175 PFPLVYLGTWEQTWKDIAAVPSDLLDGVQQ--LNRTYEFMEQTGFNILSLTSSTIPFFEH 232
Query: 651 NQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGT 710
N SPRN++QC ++KQT G +Q++ +R + KL+ + PQ I RT YG+D+ G
Sbjct: 233 NCSPRNLFQCGLSKQTAGTQLQSMLWRKEAKLFQMYCPQRYISRTLPMDYYGLDDVSLGV 292
Query: 711 NAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNK 770
NA+VA+LA+TGYD++DA+I+N ++ GM + I + I S G + D R
Sbjct: 293 NAVVAILAHTGYDLDDAIIVNSTASQLGMFNACITVAKVIVASGTGERKDV-FVFHNRLP 351
Query: 771 DAKSLHSVIDSDGLPYVGQMIHPGEP------------------YCS------------- 799
D K +D+ GLP + G P +C
Sbjct: 352 DGKPFVPELDAQGLPRKRAVPGAGSPLSFDTDHSHPSLRDSSAVFCCARRFERVDPITRK 411
Query: 800 -IYDKT---TNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFS 855
+Y+ T WR + KG + + V + P FR R P IGDKFS
Sbjct: 412 KVYEYTRHHVTRWR-HFDKGEDGWVANIVPLTYDGPD--PTAVLFVFRIPRPPAIGDKFS 468
Query: 856 SRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
SRHGQKG D+PF+ G+ PD+IINPHAFPSRMT+ M+LE + AK
Sbjct: 469 SRHGQKGTLPLNIRAYDLPFTSRDGISPDVIINPHAFPSRMTVGMVLEMMGAK 521
>gi|226480014|emb|CAX73303.1| putative DNA-directed RNA polymerase II 140 kDa polypeptide (RNA
polymerase II subunit 2) (RPB2) [Schistosoma japonicum]
Length = 1196
Score = 230 bits (587), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 233/917 (25%), Positives = 378/917 (41%), Gaps = 119/917 (12%)
Query: 57 YLDAGSPVVR---------ERFNFGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYF 107
Y+D ++R E+ G+ P+ML++ C L + L L E + GGYF
Sbjct: 143 YVDVMKKIIRDETEEEKPLEKKFIGKIPIMLRSTYCLLSVMSDRDLAELNECPLDPGGYF 202
Query: 108 ILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVR-KDQSSVTLKLYYL 166
I+NG E+V L Q + F+ + Y K + C+ + + TL + +
Sbjct: 203 IINGSEKV-----LIAQEKMATNTVYVFKQKDSKYAYKTEIRSCLEHSSRPASTLWINMM 257
Query: 167 LNGS----------VRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKE 216
G R+ L + +PV IV +AL D +I H+ +D+ +E
Sbjct: 258 ARGGKDGSKRATIGQRIVAILPYIKQEIPVLIVFRALGFVADRDILEHIIYDFDDTEMRE 317
Query: 217 --KGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETV 274
K ++ V + K+ L IG + G+ E A+ +
Sbjct: 318 MIKPSLDDAFVIQEQKV---------------ALNFIGS--RGARPGVTKEKRIKYAKEI 360
Query: 275 IRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITI 330
++ H+ ++ K L +M+ +L D+ D N+ + L G L+
Sbjct: 361 LQKETLPHVGVSDFCETRKAYFLGYMVHRLLLAALKRRDVDDRDHYGNKRLDLAGPLLAF 420
Query: 331 YLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGR 390
+ + L K +L + + GK F N++ + S+ I ++ L TG
Sbjct: 421 LFRGLFRN-LTKEIRLYAQKFIDKGKDF------NLELAIR---SQIITDGLKYSLATGN 470
Query: 391 LATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLC 450
Q + Q R G + RL F +S R ++ G + R+L WG +C
Sbjct: 471 WGDQKKAN-QARPGVSQVLNRLTFASTLSHLRRLNSPIGRDG-KLARPRQLHNTLWGMIC 528
Query: 451 PVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVK 510
P TP+G GL+ ++ ++ + IL L M +L ++
Sbjct: 529 PAETPEGHAVGLVKNLALMAYIS-----------VGSQPSPILEFLEEWSM-ENLEEIAP 576
Query: 511 SGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAASVIPDDLEVGYVPLS 564
S + ++G VG+ S + ++ LR+L+ VS S+I D + +
Sbjct: 577 SAIGKTCKIFVNGCWVGI--HSSPDHLMGTLRKLRRQVDVIVSEVSMIRDYRDQEIRIYT 634
Query: 565 LGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN------------IELIGPFEQ-VFMEI 611
G + K + +I L +++ N +E I E+ M
Sbjct: 635 DAGRICRPLVIVEKGKLLLKRSHIELLKDKAYNRYSWQDLVLSGVVEYIDTLEEETVMIA 694
Query: 612 RCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSV 671
P TH EIHP+ +L + A++ P+ DHNQSPRN YQ M KQ MG +
Sbjct: 695 MGPAEMQAAVNYCKTHTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVYI 754
Query: 672 QALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILN 731
R D L PQ P+V T + E P G NAIVA+ YTGY+ ED++I+N
Sbjct: 755 SNFHTRMDTLANVLYYPQKPLVATRSMEYLRFRELPAGINAIVAIATYTGYNQEDSVIIN 814
Query: 732 KSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAK------SLHSVIDSDGLP 785
+S++ RG + Y+T + G + +++F + +++ +D DGL
Sbjct: 815 ESAIQRGFFRSEFYRTYKDQETRHGMDL---EEVFEKPNPQNCQGMRHAIYDKLDDDGLI 871
Query: 786 YVGQMIHPGEPYCSIY-------DKTTNSWRTNSRKG-------SESVFVDYVAVDMKNS 831
G + + D+ R +++ SE VD V V N
Sbjct: 872 APGTRVSGDDVLIGKTITLPENEDEMEGGQRRYTKRDASVFMRRSEYGIVDQVMVTWNNE 931
Query: 832 KNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHA 891
N + +R R T+ P +GDKF+SRHGQKG C + DMPF+ G+ PD+IINPHA
Sbjct: 932 GN--KFCKVRVRTTKAPQVGDKFASRHGQKGTCGIRYRQEDMPFT-CEGITPDIIINPHA 988
Query: 892 FPSRMTIAMLLESVAAK 908
PSRMTI L+E + K
Sbjct: 989 IPSRMTIGHLIECLQGK 1005
>gi|353247551|emb|CCA77052.1| probable RPA135-DNA-directed RNA polymerase I, 135 KD subunit
[Piriformospora indica DSM 11827]
Length = 268
Score = 230 bits (587), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 128/270 (47%), Positives = 169/270 (62%), Gaps = 25/270 (9%)
Query: 385 MLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPE 444
L TG L + TGLDLQQ AG+T+ AE+LN+ R+IS FR VHRGA FA L+TT+VRKLLPE
Sbjct: 4 FLATGNLVSPTGLDLQQAAGFTIVAEKLNWYRYISHFRCVHRGAFFAELKTTTVRKLLPE 63
Query: 445 SWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIG-VGMIP 503
SWGF+CPVHTPDG PCGLLNH++ +CR+ + + ++ + L ++G +GM
Sbjct: 64 SWGFICPVHTPDGSPCGLLNHLSHSCRIIT-----------NPIKAAHLPTILGSLGMTQ 112
Query: 504 SLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPL 563
+ V L V LDG+VVG S + + LR LK +P DLE+G+VP+
Sbjct: 113 AFAPSVDGS--KSLCVQLDGKVVGWATPSLAKHLATTLRILKTEGRENVPLDLEIGFVPV 170
Query: 564 SLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRR 622
S GG YPGLYLFTS + +RP R + ++S IG FEQV+M+I P+ D
Sbjct: 171 SQGGQYPGLYLFTSRARMMRPARYLPNGRDDS-----IGSFEQVYMDIAIKPEEIDPTI- 224
Query: 623 NAFPATHEEIHPTGMLSVVANLTPYSDHNQ 652
TH E+ PT LS++ANLTP+SD NQ
Sbjct: 225 ----TTHLELAPTNFLSILANLTPFSDFNQ 250
>gi|284174418|ref|ZP_06388387.1| DNA-directed RNA polymerase subunit B [Sulfolobus solfataricus
98/2]
gi|384433685|ref|YP_005643043.1| DNA-directed RNA polymerase subunit B [Sulfolobus solfataricus
98/2]
gi|167744883|pdb|2PMZ|B Chain B, Archaeal Rna Polymerase From Sulfolobus Solfataricus
gi|167744894|pdb|2PMZ|R Chain R, Archaeal Rna Polymerase From Sulfolobus Solfataricus
gi|239782145|pdb|3HKZ|B Chain B, The X-Ray Crystal Structure Of Rna Polymerase From Archaea
gi|239782158|pdb|3HKZ|J Chain J, The X-Ray Crystal Structure Of Rna Polymerase From Archaea
gi|261601839|gb|ACX91442.1| DNA-directed RNA polymerase subunit B [Sulfolobus solfataricus
98/2]
Length = 1124
Score = 230 bits (587), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 230/889 (25%), Positives = 386/889 (43%), Gaps = 116/889 (13%)
Query: 67 ERFNFGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNY 126
E G P+MLK+ + KL+ + E+ + GGYFI+NG ERV I+ +++
Sbjct: 112 EEVYIGDLPIMLKSAIDPISQYTLDKLIEIGEDPKDPGGYFIVNGSERV----IVTQEDL 167
Query: 127 PMSMVRSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGF-WLQGKEYLLP 185
+ V T A +I + VT++ L +G+ + F + GK +P
Sbjct: 168 APNRVLVDTGKTGSNITHTAKIISSTAGYRVPVTIE--RLKDGTFHVSFPAVPGK---IP 222
Query: 186 VGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRL 245
I+++AL D +I ++ D + + E P + + I A V D
Sbjct: 223 FVILMRALGILTDRDIVYAVSL--DPEVQNEL----FPSLEQASSI--ANVDD------- 267
Query: 246 QCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLN----DNNDKFNLLIFMLQKLF 301
L IG V G + E+ A+ +I Y HL D K L + + K+
Sbjct: 268 -ALDFIGSR---VAIGQKRENRIEKAQQIIDKYFLPHLGTSAEDRKKKAYYLAYAISKVI 323
Query: 302 SLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFF 361
L D+ D N+ + L G L + + +++ ++ + G+K
Sbjct: 324 ELYLGRREPDDKDHYANKRLRLAGDLFASLFRVAFKAFVKDLTYQLEKS-KVRGRKLALK 382
Query: 362 NLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFF 421
L V E+ R A TG + R G + +R N+L +S
Sbjct: 383 ALVRPDIVTERI----------------RHALATGNWVGGRTGVSQLLDRTNWLSMLSHL 426
Query: 422 RAVHRGASFA-GLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRG 480
R V +S A G R L WG +CP TP+G GL+ ++ ++A + R
Sbjct: 427 RRVI--SSLARGQPNFEARDLHGTQWGRMCPFETPEGPNSGLVKNLALMAQIAVGINER- 483
Query: 481 NIRDFSKMRTSILRVLIGVGMIPS---LPKLVKSGPP-----AVLSVLLDGRVVGVIP-S 531
+ + L +G++P + ++ + G V+L+GR++G
Sbjct: 484 ----------IVEKTLYEMGVVPVEEVIRRVTEGGEDQNEYLKWSKVILNGRLIGYYQDG 533
Query: 532 SEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISL- 590
E+ + RR I D++ VG++ +++ + RP+ +S
Sbjct: 534 GELANKIRERRR-----KGEISDEVNVGHIVTDFINE---VHVNCDSGRVRRPLIIVSNG 585
Query: 591 -PSEESQNIELIGP----FEQVFMEIRCPDGGDGGRRNAFPA----------THEEIHPT 635
P ++IE + F+ + + + NA+ A TH EI
Sbjct: 586 NPLVTIEDIEKLESGAITFDDLVRQGKIEYLDAEEEENAYVALEPNDLTPDHTHLEIWSP 645
Query: 636 GMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRT 695
+L + A++ PY +HNQSPRN YQ MAKQ +G + R D + + L PQ P+V+T
Sbjct: 646 AILGITASIIPYPEHNQSPRNTYQSAMAKQALGLYAANYQLRTDTRAHLLHYPQRPLVQT 705
Query: 696 NTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHG---QIYQTETID- 751
G P G NAI+AV+++TGY+MED++I+N+SSV+RGM ++Y TE +
Sbjct: 706 RALDIIGYTNRPAGNNAILAVMSFTGYNMEDSIIMNRSSVERGMYRSTFFRLYSTEEVKY 765
Query: 752 ---------LSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYD 802
+ + G + +G++ +R +D + ++ G + + P +
Sbjct: 766 PGGQEDKIVMPEAGVRGYKGKEYYRLLEDNGVVSPEVEVKGGDVLIGKVSPPRFLQEFKE 825
Query: 803 KTTNSWRTNSR---KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHG 859
+ + ++ + E VD V + N + +R R R P IGDKF+SRHG
Sbjct: 826 LSPEQAKRDTSIVTRHGEMGIVDLVLITETAEGN--KLVKVRVRDLRIPTIGDKFASRHG 883
Query: 860 QKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
QKGV L P +DMP++ V G+ PD+I+NPHA PSRMT+ ++E +A K
Sbjct: 884 QKGVIGMLIPQVDMPYT-VKGVVPDIILNPHALPSRMTLGQIMEGIAGK 931
>gi|357438193|ref|XP_003589372.1| DNA-directed RNA polymerase [Medicago truncatula]
gi|355478420|gb|AES59623.1| DNA-directed RNA polymerase [Medicago truncatula]
Length = 1213
Score = 230 bits (587), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 249/952 (26%), Positives = 402/952 (42%), Gaps = 135/952 (14%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAG--SPVVRERFNF-----GQFPVMLKTRRCHLQGADS 90
R ++Y+ L DV + + G V E +F G+ P+ML++ C L
Sbjct: 118 ARLRNLTYSAPLYVDVSKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSE 177
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
+ L L E + GGYFI+NG E+ V++ ++ + V F+ R+ +R
Sbjct: 178 KDLTELGECPYDQGGYFIINGSEK----VLIAQEKMSTNHV-YVFKKRQPNKYAYVGEVR 232
Query: 151 CVRKDQSS--VTLKLYYLLNGSVRLGFWLQGKEYL----------LPVGIVLKALVDTND 198
+ + Q+ T+ + L S + G +Y+ +P+ IV +AL D
Sbjct: 233 SMAESQNRPPSTMFVRMLSRASAKGG---SSGQYIRATLPYIRTEIPIIIVFRALGFVAD 289
Query: 199 LEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPV 258
+I H+ CYD + E ++ L E + + L +IG+ V
Sbjct: 290 KDILEHI--CYD---------FADTQMMELLRPSLEEA--FVIQNQQVALDYIGKRGSTV 336
Query: 259 IDGLQSESYYAVAETVIRDYIFVHLN----DNNDKFNLLIFMLQKLFSLVDHTSVSDNPD 314
G+ E A+ +++ + H+ K +++ +L D+ D
Sbjct: 337 --GVTKEKRIKYAKDILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRAEDDRD 394
Query: 315 SLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNP 374
N+ + L G L+ + R + +Q + +NGK N++ ++
Sbjct: 395 HYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQKCV-DNGKD------VNLQFAIK--- 444
Query: 375 SKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLR 434
+K I + ++ L TG RAG + RL + +S R ++ G +
Sbjct: 445 AKTITSGLKYSLATGNWGQANAAG--TRAGVSQVLNRLTYASTLSHLRRLNSPIGREG-K 501
Query: 435 TTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILR 494
R+L WG +CP TP+G+ CGL+ ++ + + + + T
Sbjct: 502 LAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFE 561
Query: 495 VLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGV--IPSSEIEKVVAHLRRLKVSAASVI 552
VL+ I + ++ + P + ++G +G+ P + + RR V+
Sbjct: 562 VLV----ISFIKEISPAVIPQATKIFVNGCWMGIHRDPDMLVRTLRKLRRRFSAEGFDVV 617
Query: 553 PDDL--EVGYV-PLSLGGAYPGLYLFTSPPKFVRPV------------RNI-SLPSEESQ 596
D+ EVG V + L L ++T + RP+ ++I SL ES
Sbjct: 618 QVDVNTEVGVVRDIRL----KELRIYTDYGRCSRPLFIVDKQRLLIKKKDIHSLQQRESP 673
Query: 597 N------------IELIGPFEQ----VFMEIRCPDGGDGGRRNAFPAT--HEEIHPTGML 638
IE I E+ + M I A+ T H EIHP+ +L
Sbjct: 674 EDGGWHDLVSKGFIEYIDTEEEETTMISMTINDLVQARLNPEEAYSDTYTHCEIHPSLIL 733
Query: 639 SVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTY 698
V A++ P+ DHNQSPRN YQ M KQ MG V +FR D Y L PQ P+V T
Sbjct: 734 GVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAM 793
Query: 699 TKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETID------- 751
+ P G NAIVA+ Y+GY+ ED++I+N+SS+DRG +++ +
Sbjct: 794 EHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTL 853
Query: 752 LSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTT------ 805
+ +D + DR + R+ L D DGL G + GE I KTT
Sbjct: 854 VKEDFGRPDRANTMGMRHGSYDKL----DDDGLAPPGTRV-SGEDV--IIGKTTPLSQEE 906
Query: 806 ---NSWRTNSR------KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSS 856
+ R + R + SE+ VD V + N+ L + +R R R P IGDKFSS
Sbjct: 907 QQGQAARYSKRDHSISLRHSETGIVDQVLL-TTNADGL-RFVKVRVRSVRIPQIGDKFSS 964
Query: 857 RHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
RHGQKG + DMP++ V G+ PD+I+NPHA PSRMTI L+E + K
Sbjct: 965 RHGQKGTVGMTYTQEDMPWT-VEGITPDIIVNPHAIPSRMTIGQLIECIMGK 1015
>gi|70794974|gb|AAZ08461.1| RNA polymerase II second largest subunit [Liriodendron tulipifera]
Length = 942
Score = 230 bits (587), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 246/939 (26%), Positives = 402/939 (42%), Gaps = 128/939 (13%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPV--VRERFNF-----GQFPVMLKTRRCHLQGADS 90
R ++Y+ L DV + + G V E +F G+ P+ML++ C L
Sbjct: 2 ARLRNLTYSAPLYVDVTKRVIKKGHDCEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSE 61
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
+ L L E + GGYFI+NG E+V ++ ++ + V F+ R+ +R
Sbjct: 62 KDLTELGECPYDQGGYFIINGSEKV----LIAQEKMSTNHV-YVFKKRQPNKYAYVAEVR 116
Query: 151 CVRKDQ----SSVTLKLYYLLNGSVRLGFWLQGKEYL----------LPVGIVLKALVDT 196
+ + Q SS+ +++ L S + G +Y+ +P+ IV +AL
Sbjct: 117 SMAESQNRPPSSMFVRM--LSRASAKGG---SSGQYIRATLPYIRTEIPIIIVFRALGFV 171
Query: 197 NDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQ 256
D +I H+ CYD + E ++ L E + + L +IG+ Q
Sbjct: 172 ADKDILEHI--CYD---------FSDTQMMELLRPSLEEA--FVIQNQQVALDYIGKRGQ 218
Query: 257 PVIDGLQSESYYAVAETVIRDYIFVHLN----DNNDKFNLLIFMLQKLFSLVDHTSVSDN 312
V G+ E A+ +++ + H+ K +++ +L D+
Sbjct: 219 TV--GVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRPEDD 276
Query: 313 PDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEK 372
D N+ + L G L+ + R + +Q + +NGK N++ ++
Sbjct: 277 RDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQKCV-DNGKD------VNLQFAIK- 328
Query: 373 NPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAG 432
+K I + ++ L TG RAG + RL F +S R ++ G
Sbjct: 329 --AKTITSGLKYSLATGNWGQANAAG--TRAGVSQVLNRLTFASTLSHLRRLNSPIGREG 384
Query: 433 LRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSI 492
+ R+L WG +CP TP+G+ CGL+ ++ + + + I +F + ++
Sbjct: 385 -KLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYI-TVGSAANPILEFLEEWSTE 442
Query: 493 LRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEI-EKVVAHLRR-LKVSAAS 550
I +IP K + ++G VG+ + E+ K + LRR + V+
Sbjct: 443 NFEEISPAVIPQATK-----------IFVNGCWVGIHRNPELLVKTLRQLRRQVDVNTEV 491
Query: 551 VIPDDLEVGYVPL--SLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN----------- 597
+ D+ + + L G L++ ++ SL E+Q+
Sbjct: 492 GVIRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKKHIRSLQQRETQDEGWHDLVAKGF 551
Query: 598 IELIGPFEQ----VFMEIRCPDGGDGGRRNAFPAT--HEEIHPTGMLSVVANLTPYSDHN 651
IE + E+ + M I A+ T H EIHP+ +L V A++ P+ DHN
Sbjct: 552 IEYVDTEEEETTMISMTISDLVSARLNPDEAYSETYTHCEIHPSLILGVCASIIPFPDHN 611
Query: 652 QSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTN 711
QSPRN YQ M KQ MG V + R D Y L PQ P+V T + P G N
Sbjct: 612 QSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGIN 671
Query: 712 AIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETID-------LSDDGNKVDRGQK 764
AIVA+ Y+GY+ ED++I+N+SS+DRG +++ + + +D + +R
Sbjct: 672 AIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLIKEDFGRPNRENT 731
Query: 765 LFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSR----------- 813
+ R+ L D DGL G + GE I KTT + S+
Sbjct: 732 MGMRHGSYDKL----DDDGLAPPGTRV-SGEDV--IIGKTTPIAQDESQGQASRYTRRDH 784
Query: 814 ----KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWP 869
+ SES VD V + N+ L + +R R R P IGDKFSSRHGQKG +
Sbjct: 785 STSLRHSESGMVDQVLL-TTNADGL-RFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYT 842
Query: 870 DIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
DMP++ V G+ PD+I+NPHA PSRMTI L+E + K
Sbjct: 843 QEDMPWT-VEGITPDIIVNPHAIPSRMTIGQLIECIMGK 880
>gi|256073421|ref|XP_002573029.1| DNA-directed rna polymerase II subunit [Schistosoma mansoni]
Length = 1304
Score = 230 bits (587), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 232/917 (25%), Positives = 377/917 (41%), Gaps = 119/917 (12%)
Query: 57 YLDAGSPVVRERFN---------FGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYF 107
Y+D ++R+ G+ P+ML++ C L + L L E + GGYF
Sbjct: 251 YVDVMKKIIRDEIEEEKPLEKKFIGKIPIMLRSTYCLLSVMSDRDLAELNECPLDPGGYF 310
Query: 108 ILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVR-KDQSSVTLKLYYL 166
I+NG E+V L Q + F+ + Y K + C+ + + TL + +
Sbjct: 311 IINGSEKV-----LIAQEKMATNTVYVFKQKDSKYAYKTEIRSCLEHSSRPASTLWINMM 365
Query: 167 LNGS----------VRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKE 216
G R+ L + +PV IV +AL D +I H+ +D+ +E
Sbjct: 366 ARGGKDGSKRATIGQRIVAILPYIKQEIPVLIVFRALGFVADRDILEHIIYDFDDTEMRE 425
Query: 217 --KGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETV 274
K ++ V + K+ L IG + G+ E A+ +
Sbjct: 426 MIKPSLDDAFVIQEQKV---------------ALNFIGS--RGARPGVTKEKRIKYAKEI 468
Query: 275 IRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITI 330
++ H+ ++ K L +M+ +L D+ D N+ + L G L+
Sbjct: 469 LQKETLPHVGVSDFCETRKAYFLGYMVHRLLLAALKRRDVDDRDHYGNKRLDLAGPLLAF 528
Query: 331 YLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGR 390
+ + L K +L + + GK F N++ + S+ I ++ L TG
Sbjct: 529 LFRGLFRN-LTKEIRLYAQKFIDKGKDF------NLELAIR---SQIITDGLKYSLATGN 578
Query: 391 LATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLC 450
Q + Q R G + RL F +S R ++ G + R+L WG +C
Sbjct: 579 WGDQKKAN-QARPGVSQVLNRLTFASTLSHLRRLNSPIGRDG-KLARPRQLHNTLWGMIC 636
Query: 451 PVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVK 510
P TP+G GL+ ++ ++ + IL L M +L ++
Sbjct: 637 PAETPEGHAVGLVKNLALMAYIS-----------VGSQPSPILEFLEEWSM-ENLEEIAP 684
Query: 511 SGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAASVIPDDLEVGYVPLS 564
S + ++G VG+ S + ++ LR+L+ VS S+I D + +
Sbjct: 685 SAIGKTCKIFVNGCWVGI--HSSPDHLMGTLRKLRRQVDVIVSEVSMIRDYRDQEIRIYT 742
Query: 565 LGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN------------IELIGPFEQ-VFMEI 611
G + K + +I L +++ N +E I E+ M
Sbjct: 743 DAGRICRPLVIVEKGKLLLKRSHIELLKDKAYNRYSWQDLVLSGVVEYIDTLEEETVMIA 802
Query: 612 RCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSV 671
P TH EIHP+ +L + A++ P+ DHNQSPRN YQ M KQ MG +
Sbjct: 803 MGPAEMQAAVNYCKTHTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVYI 862
Query: 672 QALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILN 731
R D L PQ P+V T + E P G NAIVA+ YTGY+ ED++I+N
Sbjct: 863 SNFHTRMDTLANVLYYPQKPLVATRSMEYLRFRELPAGINAIVAIATYTGYNQEDSVIIN 922
Query: 732 KSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAK------SLHSVIDSDGLP 785
+S++ RG + Y+T + G + +++F + +++ +D DGL
Sbjct: 923 ESAIQRGFFRSEFYRTYKDQETRHGMDL---EEVFEKPNPQNCQGMRHAIYDKLDDDGLI 979
Query: 786 YVGQMIHPGEPYCSIY-------DKTTNSWRTNSRKG-------SESVFVDYVAVDMKNS 831
G + + D+ R +++ SE VD V V N
Sbjct: 980 APGTRVSGDDVLIGKTITLPENEDEMEGGQRRYTKRDASVFMRRSEYGIVDQVMVTWNNE 1039
Query: 832 KNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHA 891
N + +R R T+ P +GDKF+SRHGQKG C + DMPF+ G+ PD+IINPHA
Sbjct: 1040 GN--KFCKVRVRTTKAPQVGDKFASRHGQKGTCGIRYRQEDMPFT-CEGITPDIIINPHA 1096
Query: 892 FPSRMTIAMLLESVAAK 908
PSRMTI L+E + K
Sbjct: 1097 IPSRMTIGHLIECLQGK 1113
>gi|167043846|gb|ABZ08535.1| putative RNA polymerase Rpb2, domain 6 [uncultured marine
crenarchaeote HF4000_APKG3E18]
Length = 960
Score = 230 bits (587), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 257/984 (26%), Positives = 415/984 (42%), Gaps = 168/984 (17%)
Query: 15 LVRHHIESFDYMLDEGLSEMF---DH---------------------------------- 37
+ R H+ SFD L +GL E+ DH
Sbjct: 21 IARQHLTSFDEFLTKGLQEIINEIDHIDIENAEYPYRIKLGRIQFKQPRMMELDGSVTHI 80
Query: 38 ----CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKL 93
R +SY LM +E ++ G + + G PVM+K+ C L+ +QKL
Sbjct: 81 TPAEARLRNVSYVAPLM--MEASVIEDGKTLESRFLHIGDIPVMVKSDGCILRSFTNQKL 138
Query: 94 VSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVR 153
+ E+ + GGYFI+NG ERV V L +Y +V + D+ G K V V
Sbjct: 139 IDHAEDPEDPGGYFIINGSERVI--VGLEDLSYNKIIVDA---DKIGG---KKVFKAKVY 190
Query: 154 KDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKY 213
KL +L + + G +P+ +++AL +D EI + ++ ++K
Sbjct: 191 SSIVGYRAKLELVLKEDGLIVARIPGSPVDIPIITLVRALGLESDKEIASAISL--NDKI 248
Query: 214 KKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAET 273
+ E + + + T +++I + P G+ E AET
Sbjct: 249 QNE---------------LEGSFEKTEIATPKDAIEYISKRIAP---GMLEEFQIKRAET 290
Query: 274 VIRDYIFVHLN----DNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
++ + HL + +K L KL L D+ D N+ + G ++
Sbjct: 291 LLDWGLLPHLGKQPENRKEKVQFLGEAACKLLELKLGWIQPDDKDHYGNKVVKFAGQMLA 350
Query: 330 IYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTG 389
+ + +R K ++E +G+K I V I + + TG
Sbjct: 351 DLFRTAFRNLVRDMKY----QLERSGQK------RGINAVSAAIRPGIISDKLNNAIATG 400
Query: 390 RLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT---SVRKLLPESW 446
+ R G T +R N+L +S R V S RT R L +
Sbjct: 401 NWG-------RGRVGVTQLLDRTNYLSTLSHLRRVQSPLS----RTQPNFEARDLHSTHF 449
Query: 447 GFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLP 506
G +CP TP+G CGL+ ++ + ++ S + ++ G +
Sbjct: 450 GRICPSETPEGSNCGLVKNLALSAIISVSVPSEEIVEKMYEL---------GTDYFTDVK 500
Query: 507 KLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK--------VSAASVIPDDLEV 558
VK + +DG+++G + EK+ + LR L+ V + IP+
Sbjct: 501 DSVKKDG---TRIFVDGKLIGY--HKDGEKLASSLRELRRTNKIHRHVGISIHIPEQEGA 555
Query: 559 G---YVPLSLGGAYPGLYLFTSPPKFVRP--VRNIS--LPSEES----QNIELIGPFEQV 607
YV + G L + + P + IS L S E IELI E+
Sbjct: 556 TKRLYVNCNAGRVLRSLIIVKDGKSALTPDLLDKISKKLVSWEDLIRMGVIELIDANEEE 615
Query: 608 FMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTM 667
I D ++ TH EI P+ +L A++ PY +HNQSPRN Y+ MAKQ++
Sbjct: 616 NCFITFDD------KHIKKHTHTEIFPSAILGAGASIIPYPEHNQSPRNTYESAMAKQSL 669
Query: 668 GFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDA 727
GFS + + + + PQT IV T G+++ P G N +VAVL + GY++EDA
Sbjct: 670 GFSTPMMNTSTYVRQHFMLYPQTSIVTTRAMELLGLEKRPAGQNCVVAVLPFDGYNIEDA 729
Query: 728 MILNKSSVDRGMCHG---QIYQTET------------IDLSDDGNKVDRGQKLFRRNKDA 772
++L+KSSV+RG+ +IY+ E+ I SDD + +G+K +R ++
Sbjct: 730 IVLSKSSVERGLGRTLFYRIYEAESKQYPGGMRDNFEIPNSDDNLRGYKGEKSYRLLEED 789
Query: 773 KSLHS---VIDSDGLPYVGQMIHPG--EPYCSIYDKTTNSWRTNSRKG---SESVFVDYV 824
+ S V D L +G+ P E Y + ++ +R ++ G SE+ VD +
Sbjct: 790 GIIASESRVTGGDIL--IGKTSPPRFMEEYREL--DSSGPYRRDTSIGVRPSETGVVDTI 845
Query: 825 AVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPD 884
+ S + +R R R+P IGDKF+SRHGQKGV L D+P++ G+ PD
Sbjct: 846 I--LTQSAEGGKMFKVRIRDFRSPEIGDKFASRHGQKGVVGLLAKAEDLPYTA-EGVSPD 902
Query: 885 LIINPHAFPSRMTIAMLLESVAAK 908
++INPHAFPSRMT+ M++ES+ K
Sbjct: 903 VLINPHAFPSRMTVGMMMESITGK 926
>gi|242038711|ref|XP_002466750.1| hypothetical protein SORBIDRAFT_01g013470 [Sorghum bicolor]
gi|241920604|gb|EER93748.1| hypothetical protein SORBIDRAFT_01g013470 [Sorghum bicolor]
Length = 1218
Score = 230 bits (586), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 236/936 (25%), Positives = 394/936 (42%), Gaps = 137/936 (14%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPV--VRERFNF-----GQFPVMLKTRRCHLQGADS 90
R ++Y+ L DV ++ + G V E ++ G+ P+ML++ C L
Sbjct: 159 ARLRNLTYSAPLYVDVSYRVMKKGHDCEEVTETADYPKVFIGKVPIMLRSSYCTLYQQSE 218
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
+ L L E + GGYFI+NG E+V ++ ++ + V F+ R+ +R
Sbjct: 219 KDLTELGECPYDQGGYFIINGSEKV----LIAQEKMSTNHV-YVFKKRQPNKFAYVAEVR 273
Query: 151 CVRKDQSSVTLKLYYLL------NGSVRLGFWLQGKEYL---LPVGIVLKALVDTNDLEI 201
+ ++Q+ ++ + G + Y+ +P+ IV +AL D +I
Sbjct: 274 SMAENQNRPASSMFVRMLSRAGAKGGSSGQYIRATLPYIRADIPIIIVFRALGFVADKDI 333
Query: 202 FNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDG 261
H+ CYD + E ++ L E + + L +IG+ V G
Sbjct: 334 LEHI--CYD---------FSDTQMMELLRPSLEEA--FVIQNQQVALDYIGKRGATV--G 378
Query: 262 LQSESYYAVAETVIRDYIFVHLN----DNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQ 317
+ E A+ +++ + H+ K +++ +L D+ D
Sbjct: 379 VTREKRIKYAKEILQKEMLPHVGVGEFCETKKAYYFGYIIHRLLMCALGRRAEDDRDHYG 438
Query: 318 NQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQ 377
N+ + L G L+ + + +NGK+ N++ ++ +K
Sbjct: 439 NKRLDLAGPLLGGLFRMCV----------------DNGKE------VNLQFAIK---AKT 473
Query: 378 IGTSIETMLKTGRL--ATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRT 435
I + ++ L TG A Q G RAG + RL + +S R ++ G +
Sbjct: 474 ITSGLKYSLATGNWGQANQAGT----RAGVSQVLNRLTYASTLSHLRRLNSPIGREG-KL 528
Query: 436 TSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRV 495
R+L WG +CP TP+G+ CGL+ ++ + IL
Sbjct: 529 AKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYIT-----------VGSAANPILEF 577
Query: 496 LIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK----VSAASV 551
L G + ++ + P + ++G VG+ + ++ +V LRRL+ V+
Sbjct: 578 LEEWG-TENFEEISPAVIPQAAKIFVNGCWVGIHRNPDL--LVKTLRRLRRQIDVNTEVG 634
Query: 552 IPDDLEVGYVPL--SLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN-----------I 598
+ D+ + + L G L++ ++ I+L E+ + I
Sbjct: 635 VVRDIRLKELRLYTDYGRCSRPLFIVEGQRLLIKKAHIIALQHRETPDEGWHELVSKGYI 694
Query: 599 ELIGPFEQ----VFMEIRCPDGGDGGRRNAFPAT--HEEIHPTGMLSVVANLTPYSDHNQ 652
E I E+ + M I +A+ T H EIHP+ +L V A++ P+ DHNQ
Sbjct: 695 EYIDTEEEETTMISMTISDLHNARHNPEDAYSETYTHCEIHPSLILGVCASIIPFPDHNQ 754
Query: 653 SPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNA 712
SPRN YQ M KQ MG V + R D Y L PQ P+V T + P G NA
Sbjct: 755 SPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINA 814
Query: 713 IVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKD- 771
IVA+ Y+GY+ ED++I+N+SS+DRG +++ + G V ++ R N++
Sbjct: 815 IVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVK--EEFGRPNREN 872
Query: 772 ----AKSLHSVIDSDGLPYVGQMIH---------------PGEPYCSIYDKTTNSWRTNS 812
+ +D DGL G + + S Y K +S S
Sbjct: 873 TMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTSPIPQDDAQGQASRYSKRDHS---TS 929
Query: 813 RKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDID 872
+ SES VD V + N+ L + +R R R P IGDKFSSRHGQKG + D
Sbjct: 930 LRHSESGMVDQVLL-TTNADGL-RFVKVRMRSVRIPQIGDKFSSRHGQKGTVGMTYTQED 987
Query: 873 MPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
MP++ + G+ PD+I+NPHA PSRMTI L+E + K
Sbjct: 988 MPWT-IEGITPDIIVNPHAIPSRMTIGQLIECIMGK 1022
>gi|350539902|ref|NP_001234825.1| RNA polymerase II second largest subunit [Solanum lycopersicum]
gi|68300807|gb|AAY89345.1| RNA polymerase II second largest subunit [Solanum lycopersicum]
Length = 1205
Score = 230 bits (586), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 246/935 (26%), Positives = 397/935 (42%), Gaps = 120/935 (12%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPV--VRERFNF-----GQFPVMLKTRRCHLQGADS 90
R ++Y+ L DV+ + + G V E F G+ P+ML++ C L
Sbjct: 134 ARLRNLTYSSPLYVDVKKEVIKKGHDYEEVTENQEFTKVFIGKVPIMLRSSYCSLYNLSE 193
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
+ L L E + GGYFI+NG E+V L Q S F+ R+ +R
Sbjct: 194 KDLTELGECPYDQGGYFIVNGSEKV-----LIAQEKMSSNHVYVFKKRQPNKYAYVAEVR 248
Query: 151 CVRKDQ----SSVTLKLYYLLNGSVRLGFWLQGK-EYL---LPVGIVLKALVDTNDLEIF 202
+ + Q S + +++ N G +++ Y+ +P+ +V +AL D +I
Sbjct: 249 SISEGQNKAPSGMFVRMLSRSNSKGAYGQYIRATLPYIRTEIPIIVVFRALGFVADKDIL 308
Query: 203 NHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGL 262
H+ CYD + E ++ L E + + L +IG+ V G
Sbjct: 309 AHI--CYD---------FADTQMMELLRPSLEEA--FVIQNQQVALDYIGKRGSTV--GF 353
Query: 263 QSESYYAVAETVIRDYIFVHLND----NNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQN 318
E A+ +++ + H+ K +++ +L V D+ D N
Sbjct: 354 TREKRIKYAKEILQREMLPHVGTREYCETKKAYYFGYIIHRLLLCVLGRRPEDDRDHYAN 413
Query: 319 QEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQI 378
+ + L G L+ + R + +Q + + GK N++ ++ +K I
Sbjct: 414 KRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCV-DGGKD------VNLQFAIK---AKTI 463
Query: 379 GTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSV 438
+ ++ L TG RAG + RL F +S R ++ G +
Sbjct: 464 TSGLKYSLATGNWGQANAAG--TRAGVSQVLNRLTFASTLSHLRRLNSPIGREG-KLAKP 520
Query: 439 RKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGN-IRDFSKMRTSILRVLI 497
R+L WG +CP TP+G+ CGL+ ++ + S N I +F + ++ I
Sbjct: 521 RQLHNSHWGMMCPAETPEGQACGLVKNLALMVYIT--VGSAANPILEFLEEWSTENFEEI 578
Query: 498 GVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSE-IEKVVAHLRR-LKVSAASVIPDD 555
+IP K + ++G VG+ + + + + + LRR + V+ + +
Sbjct: 579 SPAVIPQSTK-----------IFVNGCWVGIHRNPDLLVRTLRQLRRQVDVNTEVGVVRN 627
Query: 556 LEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRN--ISLPSEESQN------------IELI 601
+ + + L LF K +R +N I+L ES IE +
Sbjct: 628 INLKELRLYTDYGRCSRPLFIVDKKRLRIKKNDIIALQMRESSEDSGWHDLVAKGFIEYV 687
Query: 602 GPFEQ----VFMEIRCPDGGDGGRRNAFPAT--HEEIHPTGMLSVVANLTPYSDHNQSPR 655
E+ + M I A+ T H EIHP+ +L V A++ P+ DHNQSPR
Sbjct: 688 DTEEEETTMIAMTINDLTNSRVNPDEAYAETYTHCEIHPSLILGVCASIIPFPDHNQSPR 747
Query: 656 NMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVA 715
N YQ M KQ MG V +FR D Y L PQ P+V T + P G NAIVA
Sbjct: 748 NTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVA 807
Query: 716 VLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETID-------LSDDGNKVDRGQKLFRR 768
+ Y+GY+ ED++I+N+SS+DRG+ +++ + + +D + DR + R
Sbjct: 808 ITCYSGYNQEDSVIMNQSSIDRGLFRSLFFRSYRDEEKKMGTLVKEDFGRPDREHTMGMR 867
Query: 769 NKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTT---------NSWR------TNSR 813
+ + L + DG G + + I KTT S R + S
Sbjct: 868 HGNYDKL----EDDGFAPPGTRVSGDD---VIIGKTTPISQDEAQGQSARYTRKDHSTSL 920
Query: 814 KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDM 873
+ SE+ VD V + N+ L + IR R R P IGDKFSSRHGQKG + DM
Sbjct: 921 RHSETGIVDQVLL-TTNADGL-RFVKIRMRSVRIPQIGDKFSSRHGQKGTIGMTYTQEDM 978
Query: 874 PFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
P+S G+ PD+I+NPHA PSRMTI L+E + K
Sbjct: 979 PWSA-EGITPDIIVNPHAIPSRMTIGQLVECIMGK 1012
>gi|389860840|ref|YP_006363080.1| DNA-directed RNA polymerase subunit B' [Thermogladius
cellulolyticus 1633]
gi|388525744|gb|AFK50942.1| DNA-directed RNA polymerase subunit B' [Thermogladius
cellulolyticus 1633]
Length = 1151
Score = 230 bits (586), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 243/937 (25%), Positives = 416/937 (44%), Gaps = 123/937 (13%)
Query: 37 HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
CR ++Y + A V +D + PVMLK+ L ++L +
Sbjct: 83 ECRLRNLTYAAPVTAKVAL--VDREGSHKEQDIKLMDLPVMLKSELDPLSKLSKEELKQV 140
Query: 97 KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQ 156
E+ + GGYFI+NG E+V ++ +++ + + T A V+ + +
Sbjct: 141 GEDPDDPGGYFIINGAEKV----LIAQEDLASNNIIVDISPEGSSTTHVAKVVSTAKGRR 196
Query: 157 SSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKE 216
S + ++ +G F QG++ +P I++ AL + E+ N ++ D + +
Sbjct: 197 SQLVIERRK--DGVFYANF--QGRK--IPAPILMIALGLATEYELMNAVSFDPDVQIQL- 249
Query: 217 KGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID------------GLQS 264
P +SE V+ +L ++ + + + E+ + V++ G
Sbjct: 250 -----LPSISE-VQSVLPRLEIPPGVSEEEIRRLEEEYRKKVVEEALDFIGARMAVGRPR 303
Query: 265 ESYYAVAETVIRDYIFVHLNDN---NDKFNLLIF---MLQKLFSLVDHTSVSDNPDSLQN 318
E AE + +Y+ H+ + + + +F M+ K+ + D+ D +N
Sbjct: 304 EERVRRAERALDEYLLPHIGTDPSPSTRLKKALFIGQMINKIIEVYLGRRQPDDKDHYRN 363
Query: 319 QEILLPGHLITIYLKEKLE-DWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQ 377
+ + L G L+ L+ + ++R+ K I+ K + + ++K V++ N
Sbjct: 364 KRLKLAGDLLATLLRHAIVVSFIREVKTSIE-------KTYSKYRKVDLKMVIKPN---- 412
Query: 378 IGTSIETMLKTGRL--ATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRT 435
+ T R+ A TG R G + +R N L +S R V + A
Sbjct: 413 --------IITDRISHAMATGNWPGGRTGVSQILDRTNMLSTLSHLRRVVSPLARAQPHF 464
Query: 436 TSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRV 495
+ R+L SWG +CP TP+G GL+ ++ ++ +D + + K+
Sbjct: 465 EA-RELHFTSWGRMCPFETPEGANIGLVKNLALMAHISVGFDEKEVEQTLVKL------- 516
Query: 496 LIGVGMIP----SLPKLVKSGPP--------AVLSVLLDGRVVGVIP-SSEIEKVVAHLR 542
GV +P L + +K G + V L+GR++G+ P E+ + + LR
Sbjct: 517 --GVKTLPQILDELKESIKRGEAYSGTAEYSSWSKVYLNGRLIGLYPDGGELARKIRELR 574
Query: 543 RL-----KVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTS-----PPKFVRPVRNISLPS 592
R +V+ A + L YV G L + + P+ ++ ++N +L
Sbjct: 575 RQGKISSEVNVAYFRTEYLNEVYVNCDAGRIRRPLLVVENGELKLKPEHIKQLKNGNLKF 634
Query: 593 EESQN---IELIGPFEQVFMEIRC-PDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYS 648
E+ IE + P E+ I PD + TH EI +L +VA++ PY
Sbjct: 635 EDLVKRGVIEYLDPDEEENAYIALNPD------ELSIEHTHLEIWVPSILGIVASIIPYP 688
Query: 649 DHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPT 708
+HNQSPRN+Y+ M KQ++G + R D + + L PQ P+ +T G +E P
Sbjct: 689 EHNQSPRNIYEAAMGKQSLGLYAANFQRRMDSRGHFLHYPQKPLAQTKPLEVIGYNEKPA 748
Query: 709 GTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT-ETIDLSDDGNKVDR---GQK 764
G N +VAVL YTGY++EDA+I+NKSS++RG+ ++ T++ G + D+
Sbjct: 749 GQNMVVAVLTYTGYNIEDAVIMNKSSIERGLGRSTFFRVYSTVEYKYPGGQEDKISVPPS 808
Query: 765 LFRRNKDAKSLHSVIDSDGLP-----YVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESV 819
R K ++ + +D DG+ VG + G+ S + T + K SV
Sbjct: 809 DIRGYKGPRA-YEKLDEDGIVAPETYVVGGDVLIGKVSPSRFMITQELTGSEQVKQDTSV 867
Query: 820 --------FVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDI 871
VD V + + N + +R R R P +GDKF+SRHGQKGV + P
Sbjct: 868 VMRHEEKGIVDVVMITTDSDGN--KLVKVRVRDLRIPELGDKFASRHGQKGVVGLIIPQY 925
Query: 872 DMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
DMPF+ G+ PDLIINPHAFPSRMT+ L+ES+A K
Sbjct: 926 DMPFTE-DGITPDLIINPHAFPSRMTVGQLIESIAGK 961
>gi|167519879|ref|XP_001744279.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163777365|gb|EDQ90982.1| predicted protein [Monosiga brevicollis MX1]
Length = 1166
Score = 230 bits (586), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 223/895 (24%), Positives = 384/895 (42%), Gaps = 110/895 (12%)
Query: 71 FGQFPVMLKTRRCHLQGADS-QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMS 129
G+ P+ML+++ C L ++ + + E + GGYFI+NG E+V +I ++ +
Sbjct: 136 LGKVPMMLRSKYCTLNKMETFRDFYDINECPLDPGGYFIINGSEKV---LIAQEKMAGNT 192
Query: 130 MVRSSFRDRREGY-TDKAVVIRCVRKDQSSVTLKLYYLLNGSVR----LGFWLQGK-EYL 183
+ +D + + T+ ++ + S++ +K+ +G + G + Y+
Sbjct: 193 VYVFEKKDSKHMFVTEMRSIVEDSNRPTSTMMVKMLRGGSGGTKGRATFGRVIHASLPYI 252
Query: 184 ---LPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLS 240
+PV ++ +AL +D I H+ +D+ + E +K L E
Sbjct: 253 RQDIPVVVLFRALGFEDDRSILEHIIYDFDDME-----------MMELLKPSLDEA--FV 299
Query: 241 LTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHL----NDNNDKFNLLIFM 296
+ TR L IG + G+ + A +++ + H+ K L +M
Sbjct: 300 VQTREVALDLIGRRSMAAV-GMSKDMRVRFARDILQKEMLPHIGVGPQCEQAKAFFLGYM 358
Query: 297 LQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGK 356
+ + D+ D N+ + L G L+ + + +K + + D + N
Sbjct: 359 VHRTLQAALRRRELDDRDHYGNKRLDLAGSLVAYLFRTLFKQLTKKLTRKVTDLV-NRNH 417
Query: 357 KFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLR 416
KF L +++ +G+ + L TG Q + RAG + RL F
Sbjct: 418 KFMVITLLDVEI---------LGSGLRYSLATGNWGDQKKAH-EARAGVSQVLNRLTFAS 467
Query: 417 FISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYY 476
+S R ++ G + R+L WG++CP TP+G GL+ +++ +
Sbjct: 468 TLSHLRRLNSPIDRTG-KIAKPRQLHNTHWGYICPAETPEGHAVGLVKNLSLMASLTVGS 526
Query: 477 DSRGNIRDFSKMRTSILRVLIGVGMIPSLPKL-VKSGPPAVLSVLLDGRVVGVIPSSEIE 535
D + + L+G + L +L +S V ++G VG+ S +
Sbjct: 527 DD------------TPVHDLLGASGLDYLDRLPSRSAIKTATKVFVNGNWVGI--HSHPD 572
Query: 536 KVVAHLRRLKVSAASVIPDDL---------EVGYVPLSLGGAYPGLYL---------FTS 577
++V +R+ + AA + ++ EV V S P L + F
Sbjct: 573 ELVTTMRQYLLDAAHSVASEVSIFRNIREREVHIVTDSGRTTRPLLIVNKDDANRCRFAL 632
Query: 578 PPKFVRPVRNISLPSE---ESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIHP 634
V +RN + + +E I E+ I G TH EIHP
Sbjct: 633 KNSHVMALRNDQMSWTHLVQRGVVEYIDVNEEETTMIAMDQGTLEETSYCNTYTHCEIHP 692
Query: 635 TGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVR 694
+ +LS+ A++ P+ DHNQSPRN YQ M KQ MG + R D + L PQ P+V+
Sbjct: 693 SMILSICASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQRPLVQ 752
Query: 695 TNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSD 754
T + E P G NAIV ++ YTGY+ ED++I+N+ SV+RG+ Y++
Sbjct: 753 TRSMNYLRFAELPAGINAIVGIMTYTGYNQEDSVIMNRYSVERGLFRSVFYRSYAASEHS 812
Query: 755 DGNKVDRGQKLFRRNKDA--KSLHSVIDSDGL-----------PYVGQMIHPGEPYCSIY 801
+ ++ + K R N ++ + ++ DG+ VG+++ E
Sbjct: 813 ERGEIIKIDKPSRENCIGMRRANYDKLEDDGIVAPGIRVSGDDAIVGRLLELPEA----- 867
Query: 802 DKTTNSWRTNSR------KGSESVFVD--YVAVDMKNSKNLPQKANIRFRHTRNPIIGDK 853
+ + R R + SES +D ++V+ K K + IR R R P IGDK
Sbjct: 868 TRQASGGRFEKRDKSLFLRSSESGIIDGVMISVNQKGEKFV----KIRVRSVRTPQIGDK 923
Query: 854 FSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
F+SRHGQKG C + DMPF+ +G+ PD+I+NPHA PSRMTI L+E + K
Sbjct: 924 FASRHGQKGTCGMQYAQEDMPFAA-SGVVPDIIVNPHAIPSRMTIGHLIECLLGK 977
>gi|342180758|emb|CCC90234.1| unnamed protein product [Trypanosoma congolense IL3000]
gi|343476499|emb|CCD12414.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 1186
Score = 229 bits (585), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 243/904 (26%), Positives = 388/904 (42%), Gaps = 129/904 (14%)
Query: 67 ERFNFGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNY 126
+ G+ P+MLK+ RC+L D ++L L E + GGYFI+NG E+V ++ ++
Sbjct: 163 QNMELGRIPIMLKSMRCNLLNKDEEELPRLNECPHDQGGYFIVNGTEKV----LIAQERQ 218
Query: 127 PMSMVRSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLL---NGSVRLGFWLQGKEYL 183
+ V + R + K++V + K ++ L Y +G L + + L
Sbjct: 219 AANHVYAFTRPKGLLCEIKSIVEGSLNKPRTLQILMPYKKSGPGHGYENLLCRVAQMDEL 278
Query: 184 LPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTT 243
+P+ I+ +AL +D EI T D K + E ++ + + L + T
Sbjct: 279 IPLFILFRALDMGSDKEILQ--TVVPDLK---------DAAMLEMLRGSMEDASTLQVFT 327
Query: 244 RLQCLQHIGEHF--QPVIDGLQSESYYAVAETVIRD---YIFVHLNDNNDKFNLLIFMLQ 298
R + L IG+ Q D LQ E+ + ++RD ++ V + K + +M+
Sbjct: 328 RDEALWFIGKRLGKQDSRDNLQREA----QDLLMRDLLPHMGVDCAADRSKCLFIGYMVH 383
Query: 299 KLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKF 358
+L L + D L ++ I + G L+T L + L R+ + + D N
Sbjct: 384 RLLLLALGRREDTDRDFLGHKRIDVAGSLLTFQLNQFLVQVRREMTRTVHDFSTNRSGVV 443
Query: 359 DFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFI 418
F + + S+ I + L TG ++ + G + RL + +
Sbjct: 444 SFGRILH---------SRLITDGMRRCLATGNFGDLKSGNI--KTGVSQTLNRLTYSSSL 492
Query: 419 SFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDS 478
S R + S A + T R L WG++CPV TP+G GLL ++ C V+ D
Sbjct: 493 SNLRRIQNPIS-ASSKATRPRNLHCTQWGYICPVETPEGGSIGLLKNLALMCLVSRGSDH 551
Query: 479 RGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGV---------- 528
G ++ T + L V V ++G ++GV
Sbjct: 552 TGVVQVVQSRTTGFHSI-----------TLADLADVRVARVFVNGTLIGVHADPERLLRE 600
Query: 529 ----IPSSEIEKVVAHLRRLKVSAASVIPDD---------LEVGYVPLSLG--------G 567
E+ V+ +R ++ V D +E V L G
Sbjct: 601 LRARRRGGELSNEVSVVRDIRDREIRVFSDGGRCLRPLFVVEKSRVKLQKGKIGELLEPS 660
Query: 568 AYPGLYLFTSPPKFVRP--VRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAF 625
A PG S + ++ V + E+S I + GP E +N F
Sbjct: 661 AAPGGRREISWSRVMKKGYVELVDCEEEDSLLIAM-GPSEV--------------GKNYF 705
Query: 626 PATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHL 685
+H E+ P+ +L + A++ PY +HNQSPRN YQ M KQ MG R D + L
Sbjct: 706 -YSHCEMDPSMILGICASIIPYPNHNQSPRNTYQSAMGKQAMGVYASNFNMRMDTTAHVL 764
Query: 686 QTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIY 745
PQ P+VRT + ++ P G NAIVA+ Y+GY+ ED++I+++S+V+RG +
Sbjct: 765 FYPQKPLVRTKAMSYMRSNDLPAGHNAIVAIACYSGYNQEDSIIMSRSAVERGFFRSVFW 824
Query: 746 QTETIDLSDDGNKVDRGQKLFRRNKDAKSLH------SVIDSDGL-----PYVGQMIHPG 794
++ K GQ++F D K H + +D+DGL P +G I G
Sbjct: 825 RS----YKASEEKKREGQEMF-EIPDRKVCHVKRADYTKLDTDGLIKPGMPVIGGDIIVG 879
Query: 795 E----PYCSIYDKTTNSWR------TNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRH 844
+ P D T + R + S + +E VD V + +N N K +R R
Sbjct: 880 KTIPIPESMREDTTLTNTRILKRDCSISSRTAEKGVVDRVML-TENKGNRFTK--VRIRT 936
Query: 845 TRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLES 904
+ P IGDKF SRHGQKG + D+PF+ G+ PDLIINPHA PSRMT+A L+E+
Sbjct: 937 IKIPNIGDKFCSRHGQKGTNGIQFRQEDLPFNN-DGISPDLIINPHAIPSRMTVAHLIET 995
Query: 905 VAAK 908
+A K
Sbjct: 996 LAGK 999
>gi|66363138|ref|XP_628535.1| RNA polymerase beta subunit [Cryptosporidium parvum Iowa II]
gi|46229549|gb|EAK90367.1| RNA polymerase beta subunit [Cryptosporidium parvum Iowa II]
Length = 1177
Score = 229 bits (585), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 237/949 (24%), Positives = 382/949 (40%), Gaps = 141/949 (14%)
Query: 36 DHCRQAKISYTGKLMADVE---FQYLDAGSPV-----VRERFNFGQFPVMLKTRRCHLQG 87
+ R ++Y+ + D E ++ D GS V R + P+ML++ C
Sbjct: 107 NEARLRNLTYSSPVFVDAEQKVYKLEDDGSETLVYETVYSRLPLAKIPIMLRSEYCWTHN 166
Query: 88 ADSQKLVSLKEEAAEMGGYFILNGLERVFRS--------VILPKQNYPMSMVR-SSFRDR 138
++L S E + GGYFI+NG+E+V V L ++N P + R
Sbjct: 167 ISERELQSAGECVYDQGGYFIINGMEKVLVGQERMANNFVYLFQKNQPSKYTWIAEIRSN 226
Query: 139 REGY---TDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVD 195
REG + +V +R +Q + L Y+ +P+ I+ +AL
Sbjct: 227 REGMQATSGFSVKLRGSDGNQGQIVATLPYIRTD--------------IPIAILFRALGV 272
Query: 196 TNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHF 255
+D +I + C YD + A+ P + E + +V CL IG+
Sbjct: 273 LSDKDILSR--CVYDFN-DTQMLALLRPSLEETFEFFSQDV----------CLDFIGKRG 319
Query: 256 QPVIDGLQSESYYA--VAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNP 313
V + YA + E + ++ V + K + +M+ KL D+
Sbjct: 320 PTVGAAREKRIQYAKELFEKELLPHVGVTSGSESRKAYFIGYMVHKLCLGALGRVPEDDR 379
Query: 314 DSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKN 373
D + + L G L+ + ++ ++L+Q I+ NGK+FD + + +
Sbjct: 380 DHFGKKRLDLAGPLVAASFGQCFRKMMKDVRRLLQRNID-NGKEFDVAGVIRSASYITQT 438
Query: 374 PSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGL 433
Q T K G++ R G + RL F +S+ R ++ G
Sbjct: 439 IQYQFATGNWGKDKDGKII---------RTGVSQVLSRLTFTSALSYLRRLNTPLGREG- 488
Query: 434 RTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSIL 493
+ R+L WG +CP TP+G GL+ ++ C ++ Y R +
Sbjct: 489 KFAKPRQLHNTHWGMICPAETPEGHSVGLVKNLALMCEISVGY------------RPYAI 536
Query: 494 RVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIP 553
R + + S+ ++ G + V L+G VG S E +++LR ++ S
Sbjct: 537 RTFLDEWGMDSIDEIPPEGIKRKIKVFLNGNWVGCFDDS--EDSISNLRMIRRSG----- 589
Query: 554 DDLEVGY-VPLSLGGAYPGLYLFTSPPKFVRP-----------VRNISLPSEESQNIELI 601
E+ Y + L + LFT + +RP ++ + S ++N
Sbjct: 590 ---EIPYETSIVLDVVNREVKLFTDSGRSMRPLYIVGEDGDLKIKKSHINSLLNENPSFD 646
Query: 602 GPFEQVFMEIRCPDGGDGGRRNAFPATHEEIHPTGM------------------------ 637
E + D + G EE M
Sbjct: 647 EKMEDEKHDYTWDDLVNTGIIEYIDCEEEETSMIAMFINDLRIDRGYCSTYTHCEIHPSL 706
Query: 638 -LSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTN 696
L V A++ P+ DHNQSPRN+YQ M KQ MG R D Y L PQ P+V T
Sbjct: 707 ILGVCASIIPFPDHNQSPRNVYQSAMGKQAMGVYTSNYNVRMDTLGYVLYYPQKPLVTTR 766
Query: 697 TYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDG 756
T E P G N IV ++ Y+GY+ ED++I+N+SS+DRG+ ++T + G
Sbjct: 767 AMTYMRFRELPAGINCIVGIMCYSGYNQEDSLIMNQSSIDRGLFRSVFFRTYVSEEKQVG 826
Query: 757 NKVDRGQKLFRRNKDAKSL----HSVIDSDGLPYVGQM-------------IHPGEPYCS 799
+ + +L ++ L + +D DGL G I+P +
Sbjct: 827 SNLIEAFEL-PNPEEVSGLRFGNYGNLDLDGLIEPGNRVLGDDIIIGKVGPINPEDRDTR 885
Query: 800 IYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHG 859
I T R SE VD V + NSK + + A ++ R R P +GDKF+SRHG
Sbjct: 886 IQKLTKRDCSVGIRT-SEHGVVDEVLLS-TNSKGV-KFAKVKVRTIRIPHVGDKFASRHG 942
Query: 860 QKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
QKG + DMPF+ G+ PD+I+NPHA PSRMTI L+E + K
Sbjct: 943 QKGTIGITYRTEDMPFTQ-DGIIPDIIMNPHAIPSRMTIGHLIECLLGK 990
>gi|145340678|ref|XP_001415447.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144575670|gb|ABO93739.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 1174
Score = 229 bits (585), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 244/937 (26%), Positives = 394/937 (42%), Gaps = 125/937 (13%)
Query: 39 RQAKISYTGKLMADVEFQYL----DAGSPVVRERFN---FGQFPVMLKTRRCHLQGADSQ 91
R ++Y+ L D+ + D + V +E N G+ P+ML++ C L G +
Sbjct: 110 RLRNLTYSAPLYVDMVKEVTTVQPDGETTVEKEILNKNFIGKVPIMLRSDYCSLHGHTDK 169
Query: 92 KLVSLKEEAAEMGGYFILNGLERVFRS---------VILPKQNYPMSMVRSSFRDRREGY 142
+L L E + GGYF++NG E+V + + K+ M ++ R + E
Sbjct: 170 ELTELGECPYDEGGYFVINGSEKVLIAQERMSTNHVYVFEKKQPSKFMWQAECRSQPE-- 227
Query: 143 TDKAVVIRCVRKDQSSVTLKLYYLLN----GSVRLGFWLQGKEYLLPVGIVLKALVDTND 198
R R S V +L+ G +R + +P+ +V +AL D
Sbjct: 228 -------RGSRGASSCVMRQLHAPGTKDAPGPIRCTLPYIRTD--IPIFVVFRALGFVAD 278
Query: 199 LEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPV 258
+I H+ YD E + P + E I EV L IG+ V
Sbjct: 279 KDILEHIV--YDLA-DNEMMEMLRPSIEEAFVIQSQEV----------ALDFIGKRGSAV 325
Query: 259 IDGLQSESYYAVAETVIRDYIFVHLNDNND----KFNLLIFMLQKLFSLVDHTSVSDNPD 314
G+ E A+ +++ + H+ D K L +M+ +L D+ D
Sbjct: 326 --GVSREKRIKYAKEILQKELLPHVGVREDCETKKAYFLGYMIHRLLLCSLGRRPEDDRD 383
Query: 315 SLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNP 374
N+ + L G L+ ++ L K +L ++GK+ LA IK
Sbjct: 384 HYGNKRLDLGGPLLAQLFRQLFRK-LTKDVRLYCQRCIDSGKEIQL-QLA-IK------- 433
Query: 375 SKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLR 434
+K I ++ L TG +Q D+ RAG + RL++ +S R ++ G +
Sbjct: 434 AKTITQGLKYSLATGNWGSQGAADI--RAGVSQVLNRLSYSSTLSHLRRINSPIGREG-K 490
Query: 435 TTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILR 494
R+L WG +CP TP+G+ GL+ ++ V+ S IL
Sbjct: 491 LAKPRQLHNSLWGMICPAETPEGQAVGLVKNLALMALVSVGSPSE-----------PILE 539
Query: 495 VLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVI--PSSEIEKVVAHLRRLKVSAASVI 552
L M +L ++ S + L+G VGV P+ + + R+ + ++ +
Sbjct: 540 FLDEWTM-ENLEEISPSLIAESTKIFLNGVWVGVHRNPADLVRTLRKLRRQCDIDSSVSV 598
Query: 553 PDDLEVGYVPL--SLGGAYPGLYLFTSPPKFVRPVRNISLPSEE------------SQNI 598
D+ + + L G L++ K ++I L +E+ S I
Sbjct: 599 VHDIRLKELRLYTDYGRCTRPLFIVEDDQKLKIKKQHIELLTEKDVTGYTWNELVTSGFI 658
Query: 599 ELIGPFEQVFMEIRCP-DGGDGGRRN-------AFPATHEEIHPTGMLSVVANLTPYSDH 650
E + E+ I D GR A TH EIHP+ +L + A++ P+ DH
Sbjct: 659 EYVDTEEEETTMISMTIDDLVAGRHAVEQNTGVAINYTHCEIHPSMILGICASIIPFPDH 718
Query: 651 NQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGT 710
NQSPRN YQ M KQ MG V + R D Y + PQ P+V T E P G
Sbjct: 719 NQSPRNTYQSAMGKQAMGMYVTNYQIRMDTLGYVMFYPQKPLVTTRAMEYLHFRELPAGC 778
Query: 711 NAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGN-------KVDRGQ 763
NA+VA++ YTGY+ ED++++N+S++DRG+ Y++ + G+ + DR
Sbjct: 779 NAVVAIMCYTGYNQEDSVLMNQSAIDRGLFRSLYYRSFKDEEKKQGSLSREEFERPDRDT 838
Query: 764 KLFRRNKDAKSLHSVIDSDGLPYVGQMIH------------PGEPYCSIYDKTTNSWRTN 811
L R+ + +D DGL G + P + + + + +
Sbjct: 839 CLGMRH----GTYDKLDDDGLICPGTRVSGDDIIIGKTAPLPEDDTAVLSKRFSKKDCST 894
Query: 812 SRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDI 871
K +E+ +D V + N + L + +R R R P +GDKFSSRHGQKG +
Sbjct: 895 GMKHAETGIIDQVLL-TTNDQGL-RFVKLRVRSMRTPQVGDKFSSRHGQKGTVGMTYTQE 952
Query: 872 DMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
DMPF+ G+ PD+I+NPHA PSRMTI L+E + K
Sbjct: 953 DMPFT-CEGITPDIIVNPHAIPSRMTIGQLVECIMGK 988
>gi|300122083|emb|CBK22657.2| unnamed protein product [Blastocystis hominis]
Length = 1194
Score = 229 bits (584), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 239/904 (26%), Positives = 381/904 (42%), Gaps = 118/904 (13%)
Query: 74 FPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVF---------RSVILPKQ 124
PVML++ C+L G D ++ S+ E + GGYFI+NG E+ + + K+
Sbjct: 110 IPVMLRSEACNLYGLDDERRASIGECIYDQGGYFIINGSEKAIIAQERQTTNKVYVFEKK 169
Query: 125 NYPMSMVRSSFRDRREGYTDKA-VVIRCVRKDQSSVTLKLYYLLNGSVRLGFW--LQGKE 181
+ R EG + A ++ C+ S +K Y + W L
Sbjct: 170 QPSKYSWTAEIRSVPEGSSVPAQTLMLCMYAHSSKSQIKNKYCI--------WAKLPTLS 221
Query: 182 YLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSL 241
+PV I+ +AL ND I H+ +D+ + ER + L E +
Sbjct: 222 DEIPVCILFRALGCENDRSIIQHICYNFDDVE-----------MMERFRPSLVEASECR- 269
Query: 242 TTRLQCLQHIGEHFQPVID--GLQSES-YYAVAETVIRDYIFVHLN------DNNDKFNL 292
TR L I +ID G + S A +++ + H+N N K
Sbjct: 270 -TREVALNFIATRHPKMIDENGTRPRSERVKFASRLLQKIMLPHINVDFGPNSNCKKAFY 328
Query: 293 LIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIE 352
L +M+ KL + + + ++ D + N+ + L G +I L + ++ + ++ ++
Sbjct: 329 LGYMVHKLLNCSLNRNEQEDRDHISNKRMDLAGPMIGRLFHGLLYRFTKELRSHMK-KVV 387
Query: 353 NNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERL 412
N+ K F N +M S I ++ TG ++ + G + RL
Sbjct: 388 NSRKGSSFIN------IMTNAKSSIISDGLKYSFATGNWGDRS-RGMPTTTGVSQSLNRL 440
Query: 413 NFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRV 472
+ +S R + + T R L WG +CP TP+G+ CG++ ++ C
Sbjct: 441 TYASSLSSLRRLKSPIDTTS-KVTKPRLLHSTQWGMMCPAETPEGQSCGIVKNLALMC-- 497
Query: 473 ASYYDSRGN------IRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVV 526
Y S GN RD+ + I R+L G + L + S P V ++G V
Sbjct: 498 ---YISVGNPVGAAGARDWQVEK--IYRLLENNG-VEELETIASSLIPKTTKVFVNGVWV 551
Query: 527 GVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVR 586
G+ ++ ++ H + V + G LY+ + V+ +R
Sbjct: 552 GIHRDPKV--ILDHREDFDTDVSMVYDIQERELRITADAGRCCRPLYVVDPITQRVK-IR 608
Query: 587 NISLPSEESQN----------IELIGPFEQVFMEIRCPDGGD-------GGRRNAFPATH 629
L + + + IE + E+ + C G D R+ TH
Sbjct: 609 KYHLRNLQPETMFSDLVLNRLIEYVSAEEEEY----CMIGMDLKTMRACVENRSCTTYTH 664
Query: 630 EEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQ 689
EIHP+ +L V A++ P+ DHNQSPRN YQ M KQ MG V + R D + L PQ
Sbjct: 665 CEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYVSNYRQRMDTTAHVLSYPQ 724
Query: 690 TPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT-- 747
P+V T T E P G N +VA+ Y+GY+ ED++ILN+S+++RG+ Y+T
Sbjct: 725 QPLVTTKAMTYLRFKELPAGCNCVVAICCYSGYNQEDSLILNQSAIERGLFRSIFYRTYQ 784
Query: 748 ------ETIDLSDDGNKVDRGQKLFRR--------NKDAKSLHSVIDSDGLPYVGQ---- 789
+T S + G + F R KD + L+ +D DGL G
Sbjct: 785 DTEVRRDTTTSSLSLSNPSMGNERFCRPLSEQCSMTKD-EGLYRNLDEDGLVKPGSRVTG 843
Query: 790 ---MIHPGEPYCSIYDKTTNSWRTNSR--KGSESVFVDYVAVDMKNSKNLPQKANIRFRH 844
+I P + ++ + NS + +ES VD V + N K + ++ R
Sbjct: 844 DSILIGKATPTGELNVHGRSNLKDNSTGLRHAESGIVDEVML-TTNEKGF-RFVKVKVRS 901
Query: 845 TRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLES 904
R P IGDK SSRHGQKG + DMPF+ G+ PD+I+NPHA PSRMTI L+E
Sbjct: 902 VRVPQIGDKLSSRHGQKGTIGMTYRQEDMPFTE-NGIVPDIIMNPHAIPSRMTIGQLIEC 960
Query: 905 VAAK 908
+ K
Sbjct: 961 LLGK 964
>gi|241813048|ref|XP_002416483.1| DNA-directed RNA polymerase II, putative [Ixodes scapularis]
gi|215510947|gb|EEC20400.1| DNA-directed RNA polymerase II, putative [Ixodes scapularis]
Length = 1142
Score = 229 bits (584), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 243/928 (26%), Positives = 399/928 (42%), Gaps = 110/928 (11%)
Query: 34 MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVR---ERFNFGQFPVMLKTRRCHLQGADS 90
M + R ++Y+ L D+ + G V ++ G+ P+ML++ C L
Sbjct: 109 MPNEARLRNLTYSAPLYVDITKTVIKEGEEPVETQHQKTFIGKIPIMLRSTYCLLNSLTD 168
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
+ L L E + GGYFI+NG E+V L Q + F+ + + KA
Sbjct: 169 RDLSELNECPLDPGGYFIINGSEKV-----LIAQEKMATNTVYVFQMKDSKFVFKAECRS 223
Query: 151 CVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
C+ + + TL + L G + G+ + +P+ IV +AL D +
Sbjct: 224 CLEHSSRPTSTLWVNMLARGGQGVRKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRD 283
Query: 201 IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAE---VQDLSLTTRLQCLQHIGEHFQP 257
I H+ +++ P + E VK L E +Q+ ++ L + G H
Sbjct: 284 ILEHIIYDFED-----------PEMMEMVKPSLDEAFVIQEQNVA--LNFIGARGAH--- 327
Query: 258 VIDGLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNP 313
G+ E + +++ + H+ ++ K L +M+ +L D+
Sbjct: 328 --PGVTKERRIKYSREILQKEMLPHVGVSDFCETKKAYYLGYMVHRLLLAALGRRELDDR 385
Query: 314 DSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKN 373
D N+ + L G L+ + + L K ++ + + GK F+ LA IK
Sbjct: 386 DHYGNKRLDLAGPLMAFLFRGLFRN-LTKEVRMYAQKFIDRGKDFNL-ELA-IK------ 436
Query: 374 PSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGL 433
++ I + L TG Q Q RAG + RL + +S R V+ G
Sbjct: 437 -TRIITDGLRYSLATGNWGDQKKAH-QARAGVSQVLNRLTYASTLSHLRRVNSPIGRDG- 493
Query: 434 RTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSIL 493
+ R+L WG +CP TP+G GL+ ++ + SY + IL
Sbjct: 494 KLAKPRQLHNTLWGMICPAETPEGHAVGLVKNLA----LMSYIS-------VGSQPSPIL 542
Query: 494 RVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VS 547
L M +L ++ S + ++G VG+ + ++++ LR+L+ VS
Sbjct: 543 EFLEEWSM-ENLEEIAPSAIAEATKIFVNGCWVGI--HRDPDQLMNTLRKLRRQMDIIVS 599
Query: 548 AASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNI-SLPSEESQN--------- 597
S++ D + + G L K + R+I SL E N
Sbjct: 600 EVSMVRDIRDREIRIYTDAGRICRPLLIVEDQKLLLKRRHIDSLKEREYNNYSWQDLVAS 659
Query: 598 --IELIGPFEQ--VFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQS 653
+E I E+ V + + D D G TH EIHP+ +L V A++ P+ DHNQS
Sbjct: 660 GVVEYIDTLEEETVMLSMTPDDLQDKGFAYCSTYTHCEIHPSMILGVCASIIPFPDHNQS 719
Query: 654 PRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAI 713
PRN YQ M KQ MG + R D + L P P+ T + E P G N+I
Sbjct: 720 PRNTYQSAMGKQAMGIYITNFHVRMDTLAHVLYYPHKPLTTTRSMEYLRFRELPAGINSI 779
Query: 714 VAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT-ETIDLSDDGNKVDRGQKLFRRNKDA 772
VA+++YTGY+ ED++I+N S+VDRG Y++ + + G++ ++ +K R
Sbjct: 780 VAIMSYTGYNQEDSIIVNASAVDRGFFRSVFYRSYKDSECKRVGDQEEQFEKPTRETCQG 839
Query: 773 --KSLHSVIDSDGLPYVGQMIHPGE----PYCSIYDKTTNSWRTNSR----------KGS 816
+++ +D DG+ G + + ++ + + TN R + S
Sbjct: 840 MRNAIYDKLDDDGIIAPGTRVSGDDVIIGKTITLPENDDDLESTNRRFTKRDASTFLRNS 899
Query: 817 ESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFS 876
E+ VD V + + N++ + IR R R P IGDKF+SRHGQKG C + DMPF+
Sbjct: 900 ETGIVDQVMLTV-NAEGY-KFCKIRVRSVRIPQIGDKFASRHGQKGTCGITYRQEDMPFT 957
Query: 877 GVTGMRPDLIINPHAFPSRMT-IAMLLE 903
G+ PD+IINPHA PSRMT I+ LL+
Sbjct: 958 A-DGLTPDIIINPHAIPSRMTKISNLLQ 984
>gi|387593606|gb|EIJ88630.1| DNA-directed RNA polymerase II subunit RPB2 [Nematocida parisii
ERTm3]
gi|387597261|gb|EIJ94881.1| DNA-directed RNA polymerase II subunit RPB2 [Nematocida parisii
ERTm1]
Length = 1137
Score = 229 bits (583), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 242/927 (26%), Positives = 393/927 (42%), Gaps = 109/927 (11%)
Query: 28 DEGLSEMF-DHCRQAKISYTGKLMADVEFQYLDAGSPVVRER----FNFGQFPVMLKTRR 82
D S MF + R ++Y+ L D+ + G V R G P+ML++
Sbjct: 84 DGRTSSMFPNDARVRSLTYSASLYIDI-VKTEHIGDEEVESRSYKKMPIGSIPIMLRSLY 142
Query: 83 CHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRS--------VILPKQNYPMSMVRSS 134
C D + + ++E + GGYFI+NG E+V + V + K++ P + ++
Sbjct: 143 CVYSNTDDRDMNRIEECTYDQGGYFIVNGSEKVLIAHERMASNLVYIFKKSPPSPYLYTA 202
Query: 135 FRDRREGYTDK---AVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLK 191
+ + ++ IR V + S + G L L + +PV ++ +
Sbjct: 203 EMRSVPDHGLRLPSSLTIRLVSRASDSAS-------GGGYLLRALLPHAKLDVPVVVIFR 255
Query: 192 ALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHI 251
AL +D EI H+ CYD E ++ P + E I QD + L +I
Sbjct: 256 ALGFVSDKEILEHI--CYDFS-DTEMLSMLRPSIEEAFVI-----QDQGVA-----LDYI 302
Query: 252 GEHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDN----NDKFNLLIFMLQKLFSLVDHT 307
G+ P G E A+ + + H+ K L + + KL +
Sbjct: 303 GKRVAPA--GFSKEKRIKFAKDLFQKEFLPHVGTKEFCETKKAYLFGYTINKLLMVALGR 360
Query: 308 SVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIK 367
++ D + + L G L+T + + + K +Q I+ N D + ++
Sbjct: 361 RSEEDRDHYGRKRLDLAGPLMTGLFRMLFKKMSNELAKYMQRCIDGNK---DLNLIVGLR 417
Query: 368 KVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRG 427
+ + + L TG Q+ +Q RAG R N++ +S R V+
Sbjct: 418 -------TSTLTNGLRYSLATGNWGEQSK-SMQARAGVAQVLNRYNYISTLSHLRRVNTP 469
Query: 428 ASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSK 487
G + R+L WG +CP TP+G+ CGL +++F+
Sbjct: 470 IGRDG-KLAKPRQLHSSHWGMVCPAETPEGQACGL-------------------VKNFAL 509
Query: 488 MRTSILRVLIGVGMIPSLPKLVKS----GPPAVLS---VLLDGRVVGVIPS-SEIEKVVA 539
M + V + ++ P A++ VL++G VGV S ++ +
Sbjct: 510 MSHVSVGTSSSVVVELLEECGLEGLEEVSPSAIVGATKVLVNGSWVGVHRSPDDLMGTLK 569
Query: 540 HLRRL-KVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNI 598
+LRR ++S+ I DL + ++ G LF +R R +
Sbjct: 570 YLRRSGELSSEIAIVRDLREKEIRINTDGGRACRPLFIVDKGVLRIERFLEANRHRKFTW 629
Query: 599 -ELIGPFEQVFMEIRCPDGG-----DGGRRNA-FPATHEEIHPTGMLSVVANLTPYSDHN 651
EL+ F+++ + G +N TH EI P ML V A++ P+ DHN
Sbjct: 630 DELMADGCVEFLDVEEEETAMIAVKPGDLKNTDVMYTHCEIQPATMLGVCASVVPFPDHN 689
Query: 652 QSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTN 711
QSPRN YQ M KQ MG R D L PQ P+V T + E P+G N
Sbjct: 690 QSPRNTYQSAMGKQAMGMYATNFLMRMDSLSNVLCYPQKPLVITQSMNFLRFRELPSGQN 749
Query: 712 AIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGN--------KVDRGQ 763
A+VA+ Y+GY+ ED++++N+ +VDRG+ Y+T + D+ K DR
Sbjct: 750 AMVAIACYSGYNQEDSVVMNRGAVDRGLFRSFFYRTYS-DMESRTKPEEQECFMKPDR-- 806
Query: 764 KLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWR--TNSRKGSESVFV 821
+ +R K+A + +D DGL G + + T + ++ + + +G+ES V
Sbjct: 807 RSVQRMKNAN--YEKLDMDGLVPPGTRVSGEDVLIGKTVSTPDGYKDASTTMRGTESGVV 864
Query: 822 DYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGM 881
D V + K+ + A IR R R P +GDKF+SRHGQKG + DMPF+ G+
Sbjct: 865 DRVILTTKDGY---RYARIRVRSARTPQMGDKFASRHGQKGTIGIMLSPEDMPFTA-DGI 920
Query: 882 RPDLIINPHAFPSRMTIAMLLESVAAK 908
PD+IINPHA PSRMTI L+E + K
Sbjct: 921 TPDIIINPHAIPSRMTIGHLVECLLGK 947
>gi|407461849|ref|YP_006773166.1| DNA-directed RNA polymerase subunit B [Candidatus Nitrosopumilus
koreensis AR1]
gi|407045471|gb|AFS80224.1| DNA-directed RNA polymerase subunit B [Candidatus Nitrosopumilus
koreensis AR1]
Length = 1115
Score = 228 bits (582), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 257/982 (26%), Positives = 408/982 (41%), Gaps = 163/982 (16%)
Query: 15 LVRHHIESFDYMLDEGLSEMFDHCRQAKI--------------------------SYTGK 48
+ R H+ SFD L+ GL + + Q I S T
Sbjct: 21 VARQHLNSFDEFLERGLQSIINEVGQIDIENAEYPYKIQLGKVKLQQPRMMELDGSITHI 80
Query: 49 LMADVEFQYLDAGSPVVRE------------RF-NFGQFPVMLKTRRCHLQGADSQKLVS 95
A+ + + +PV+ E RF + G PVM K+ C L +QKLV
Sbjct: 81 TPAEARLRNVSYSAPVMMEASVVEDGKILESRFVHIGDVPVMAKSNACILHNFSTQKLVE 140
Query: 96 LKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKD 155
E+ + GGYFI+NG ERV V L +Y +V RE V V
Sbjct: 141 HGEDPNDPGGYFIINGSERVI--VGLEDLSYNKIIVD------RETVGGNIVHKAKVYSS 192
Query: 156 QSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKK 215
KL ++ + + G +PV +++AL +D EI ++ DE +
Sbjct: 193 IVGYRAKLELVMKSDGLIVARIPGSPVDIPVVTLMRALGLESDREIAAAVSLV-DELQDE 251
Query: 216 EKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVI 275
+G+ + D+ T + +I + P G+ E AET++
Sbjct: 252 LEGS-------------FEKAGDVP--TAKDAIVYISKRIAP---GMLEEFQIKRAETLL 293
Query: 276 RDYIFVHLN----DNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIY 331
+ HL + +K L KL L D+ D N+ I G ++
Sbjct: 294 DWGLLPHLGKHPENRKEKAQFLGEAACKLLELKLGWIKPDDKDHYGNKVIKFAGQMLADL 353
Query: 332 LKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRL 391
+ + +R K ++E +G+K + +I + T +L
Sbjct: 354 FRTAFRNLVRDMKY----QLERSGQKRGI---------------NAVAAAIRPGIITDKL 394
Query: 392 --ATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT---SVRKLLPESW 446
A TG + R G T +R N+L IS R + S RT R L +
Sbjct: 395 NNAIATGNWGRGRVGVTQLLDRTNYLSTISHLRRIQSPLS----RTQPNFEARDLHATHF 450
Query: 447 GFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLP 506
G +CP TP+G CGL+ ++ + ++ S + + T V +
Sbjct: 451 GRICPSETPEGSNCGLVKNLALSGIISVNVPSEEIVEKLYDLGT--------VHFFDAKE 502
Query: 507 KLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLG 566
L K G + +DG+++G E ++ LR L+ + S I + V + +
Sbjct: 503 DLKKDG----TRIFVDGKLIGYYKDGE--QLAESLRDLRRN--SKIHPHVGVSFHKSEIE 554
Query: 567 GAYPGLYLFTSPPKFVRPV---------------RNISLPSEESQNIELIGPFEQVFM-- 609
G+ LY+ + + +RP+ IS ++ +G E +
Sbjct: 555 GSTRRLYVNCNAGRVLRPLIIIKDNKPLLTADLLDKISKKLISWTDLLRMGVLEMIDANE 614
Query: 610 EIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGF 669
E C D ++ TH E+ P +L A++ PY +HNQSPRN Y+ MAKQ++GF
Sbjct: 615 EENCYVTLD--EKDTKKHTHLEVFPPAILGAGASIIPYPEHNQSPRNTYESAMAKQSLGF 672
Query: 670 SVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMI 729
S + + + + PQ PIV T G+++ P G N +VAVL + GY++EDA++
Sbjct: 673 STPMMNTSTYVRQHFMLYPQVPIVNTKAMKLLGLEDRPAGQNCVVAVLPFDGYNIEDAIV 732
Query: 730 LNKSSVDRGMCHG---QIYQTET------------IDLSDD---GNKVDRGQKLFRRNKD 771
L+K+SVDRG+ +IY E I ++D G K +R +L +
Sbjct: 733 LSKASVDRGLGRTFFYRIYDAEAKQYPGGMRDAFEIPNAEDNIRGYKGERAYRLLEEDGV 792
Query: 772 AKSLHSVIDSDGLPYVGQMIHPG--EPYCSIYDKTTNSWRTNSRKG---SESVFVDYVAV 826
+ V D L +G+ P E Y +++ +R ++ G SE+ VD V +
Sbjct: 793 VAAEAPVKGGDIL--IGKTSPPRFMEEYREF--ESSGPYRRDTSIGVRPSETGVVDTVVM 848
Query: 827 DMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLI 886
N K IR R R P IGDKF+SRHGQKG+ L D+P++ +GM PD++
Sbjct: 849 TQSNEGGKMYK--IRARDMRIPEIGDKFASRHGQKGILGILAKAEDLPYTA-SGMSPDVL 905
Query: 887 INPHAFPSRMTIAMLLESVAAK 908
INPHAFPSRMT+ M++ES+ K
Sbjct: 906 INPHAFPSRMTVGMMMESICGK 927
>gi|302780123|ref|XP_002971836.1| hypothetical protein SELMODRAFT_148107 [Selaginella moellendorffii]
gi|300160135|gb|EFJ26753.1| hypothetical protein SELMODRAFT_148107 [Selaginella moellendorffii]
Length = 1178
Score = 228 bits (582), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 226/894 (25%), Positives = 384/894 (42%), Gaps = 110/894 (12%)
Query: 71 FGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSM 130
G+ P+ML++ C L + L L E + GGYFI+NG E+V ++ ++ +
Sbjct: 142 IGKVPIMLRSSYCTLYQNSDKDLTELGECPYDQGGYFIINGSEKV----LIAQEKMSTNH 197
Query: 131 VRSSFRDRREGYTDKAVVIRCVRKDQS--SVTLKLYYLLNGSVRLGFWLQGKEYL----- 183
V F+ R+ +R + + Q+ + ++ + L + G +Y+
Sbjct: 198 V-YVFKKRQPNKYAYVAEVRSMAESQNRPASSMFVRMLSRAGAKAG---SSGQYIRATLP 253
Query: 184 -----LPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQD 238
+P+ +V +AL D +I H+ CYD + E ++ L E
Sbjct: 254 YIKQEIPIIVVFRALGFVADKDILEHI--CYD---------FSDTAMMELLRPSLEEA-- 300
Query: 239 LSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLN----DNNDKFNLLI 294
+ + L +IG+ V G+ E A+ +++ + H+ K
Sbjct: 301 FVIQNQQVALDYIGKRGSTV--GVTREKRIKYAKDILQKEMLPHVGVGEYCETKKAYFFG 358
Query: 295 FMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENN 354
+++ +L D+ D N+ + L G L+ ++ + + +Q + +N
Sbjct: 359 YIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGSLFRQLFRKLTKDVRAYLQKCV-DN 417
Query: 355 GKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNF 414
GK+ NLA K +K I + ++ L TG + RAG + RL +
Sbjct: 418 GKEV---NLAYAVK------AKTITSGLKYSLATGNWGQANSGN--ARAGVSQVLNRLTY 466
Query: 415 LRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVAS 474
+S R ++ G R+L WG +CP TP+G+ CGL+ ++
Sbjct: 467 ASTLSHLRRLNSPIGREGRLLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMA---- 522
Query: 475 YYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEI 534
Y + G+ + + V + + ++ + P + ++G VG+ E
Sbjct: 523 -YITVGSA-------ANPILVFLEEWSTENFEEISPAVIPNATKIFVNGAWVGI--HREP 572
Query: 535 EKVVAHLRRLK----VSAASVIPDDLEVGYVPL--SLGGAYPGLYLFTSPPKFVRPVRNI 588
E +V LR+L+ V+ + D+ + + L G L++ ++
Sbjct: 573 EHLVKTLRQLRRQVDVNTEVGVVRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKSDIR 632
Query: 589 SLPSEESQN-----------IELIGPFEQ----VFMEIRCPDGGDGGRRNAFPATHE--E 631
+L +E+ IE + E+ + M I A+ T+ E
Sbjct: 633 ALQQKEAGENGWHELVSKGFIEYVDTEEEETTMISMTISDLVNARLNPEEAYSDTYTHCE 692
Query: 632 IHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTP 691
IHP+ +L V ++ P+ DHNQSPRN YQ M KQ MG V + R D Y L PQ P
Sbjct: 693 IHPSMILGVCGSIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKP 752
Query: 692 IVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETID 751
+V T + P G NAIVA+ Y+GY+ ED++I+N+SS+DRG Y++ +
Sbjct: 753 LVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSIFYRSYRDE 812
Query: 752 LSDDGNKVDRGQKLFRRNKDAKS-----LHSVIDSDGLP-----YVGQMIHPGEPYCSIY 801
G V ++ R N++ + + +D DG+ G+ + G+ +
Sbjct: 813 EKKAGTLVK--EEFERPNRETTTGMRHGSYDKLDDDGIAPPGTRVSGEDVIIGKTTPLVQ 870
Query: 802 DKT-TNSWRTNSR------KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKF 854
D+T T + R + R + SES +D V + N+ L + R R R P IGDKF
Sbjct: 871 DETGTQAQRYSKRDQSTCLRHSESGMIDQVLL-TTNADGL-RFVKTRVRSIRIPQIGDKF 928
Query: 855 SSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
SSRHGQKG + DMPF+ G+ PD+I+NPHA PSRMTI L+E + K
Sbjct: 929 SSRHGQKGTIGMTYTQEDMPFTQ-EGITPDIIVNPHAIPSRMTIGQLIECIMGK 981
>gi|170579233|ref|XP_001894738.1| DNA-directed RNA polymerase III subunit 127.6 kDa polypeptide,
putative [Brugia malayi]
gi|158598542|gb|EDP36414.1| DNA-directed RNA polymerase III subunit 127.6 kDa polypeptide,
putative [Brugia malayi]
Length = 1104
Score = 228 bits (582), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 249/980 (25%), Positives = 418/980 (42%), Gaps = 160/980 (16%)
Query: 9 FEPLRELVRHHIESFDYML------------------------------------DEGLS 32
F +R LV+ HI S+DY + +EG +
Sbjct: 22 FLQVRGLVKQHIASYDYFVSTEIKKILRANDKITSDANPSFYLKYLDIHVGMPSSEEGFN 81
Query: 33 EMFD-----HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQG 87
++ D CR ++Y+ + D+E Y V+R G+ PVML++ +C L+
Sbjct: 82 QINDKISPHECRLRDMTYSAPISVDIE--YTRGSQRVLRNGLIIGKMPVMLRSSKCVLKN 139
Query: 88 ADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAV 147
+ +L ++E + GGYFI+ G E+V V++ +Q + ++ R +
Sbjct: 140 MNESELARVQECPYDPGGYFIIRGSEKV---VLIQEQ-----LSKNRIMIGRNSKKELQC 191
Query: 148 VIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYL--LPVGIVLKALVDTNDLEIFNHL 205
I +++ S T Y+ + R ++++ + +P+ I+ KA+ +D +I + +
Sbjct: 192 EILSSTQERKSKT----YIASKKQR--YYVRHNQLSDDVPIAIIFKAMGFESDHDIVSAV 245
Query: 206 TCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEH-----FQPVID 260
+EK+ A +P + E + T+ LQ+I F P
Sbjct: 246 G--LEEKFV----AAMAPSIEE--------CASHQIVTQEGALQYIASKVKIRKFGPATS 291
Query: 261 GLQSESYYAVAETVIRDYIFVHLN--DNNDKFN--LLIFMLQKLFSLVDHTSVSDNPDSL 316
G + A + + + H+ D N K L M+++L + D+ D
Sbjct: 292 GTSTLPREHEAIDFLSNLMIAHVPCPDGNMKMKAVYLGLMVRRLMQAEVGDTECDDRDFY 351
Query: 317 QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
N+ + L G L+ + ++ + + + K++ + + GK LA +++
Sbjct: 352 GNKRLELAGSLLALLFEDVFKRFNSELKRIADNSL---GK-----TLAAPLDIVKHVRQD 403
Query: 377 QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
I ++ L TG + +R G T RL+++ + ++ ++F R
Sbjct: 404 LITNALVDALATGNWTIKRFK--MERQGVTQVLSRLSYISVLGMMTRIN--STFEKTRKV 459
Query: 437 S-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRV 495
S R L P WG LCP TP+GE CGL+ ++ + + D + IR L
Sbjct: 460 SGPRSLQPSQWGMLCPSDTPEGESCGLVKNLALLSHITTDSDEKPVIR---------LLY 510
Query: 496 LIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDD 555
GV + SL PA V L+G +VG+ + + +++V+ +R ++
Sbjct: 511 NAGVEDVKSL-HFSAIHNPAYHIVFLNGVIVGL--TIDPQRIVSTIRAVRRHG------- 560
Query: 556 LEVGYVPLSLGGAYPGLYLFTSPPKFVRP---VRNISLPSEESQNIELIGPFEQVFMEI- 611
L +V +S A +Y+ + + RP V+N S+P ++IE + ++F +
Sbjct: 561 LLNEFVSVSTNAAQRSVYIASDGGRLCRPYIIVKN-SIPQVTQEHIEELKKGYRIFEDFV 619
Query: 612 -----------RCPDGGDGGRRNAF--PATHEEIHPTGMLSVVANLTPYSDHNQSPRNMY 658
D N TH EI P +L V A L PY HNQSPRN Y
Sbjct: 620 DDGLIEYLDVNEMNDASIAVYENQIKPTTTHLEIEPFTLLGVCAGLIPYPHHNQSPRNTY 679
Query: 659 QCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLA 718
QC M KQ MG + R D +Y L PQ P+V+T T ++ P G NAI+AV++
Sbjct: 680 QCAMGKQAMGTIGYNQQKRIDSLMYLLVYPQRPLVKTKTIEFCNFEKLPAGQNAIIAVMS 739
Query: 719 YTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKV-DR--GQKLFRRNKDAKSL 775
Y+GYD+EDA++LNK+S+DRG +Y+ N+ DR G + +
Sbjct: 740 YSGYDIEDALVLNKASLDRGYGRCLVYKHAKATARKYPNQTFDRLMGPTIEAATRKPIYK 799
Query: 776 HSVIDSDGLPYVGQ-------MIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDM 828
H V+D +G+ YVG MI+ P S+ T S + G S V+Y V +
Sbjct: 800 HQVLDQEGIVYVGACIRSKQVMINKHMPVVSMEAGATVSNNDGTNIGG-SHEVEYKDVSV 858
Query: 829 KNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIIN 888
+P A R T N H K DMPF+ + GM PD+I+N
Sbjct: 859 VYRNPVPSYAE-RVLLTYNE------DDAHLVKE---------DMPFNDL-GMCPDMIMN 901
Query: 889 PHAFPSRMTIAMLLESVAAK 908
PH +PSRMT+ L+E ++ K
Sbjct: 902 PHGYPSRMTVGKLMELLSGK 921
>gi|393794931|ref|ZP_10378295.1| DNA-directed RNA polymerase subunit B [Candidatus Nitrosoarchaeum
limnia BG20]
Length = 1115
Score = 228 bits (581), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 251/991 (25%), Positives = 408/991 (41%), Gaps = 181/991 (18%)
Query: 15 LVRHHIESFDYMLDEGLSEMFDHCRQAKI--------------------------SYTGK 48
+ R H+ SFD L+ GL + + Q +I S T
Sbjct: 21 IARQHLNSFDEFLERGLQSIINEVGQIEIENAEYPYKIQLGKVKLQQPRMMELDGSITHI 80
Query: 49 LMADVEFQYLDAGSPVVRE------------RF-NFGQFPVMLKTRRCHLQGADSQKLVS 95
A+ + + +PV+ E RF + G PVM K+ C L +QKL+
Sbjct: 81 TPAEARLRNVSYSAPVMMEASVVEDGKILESRFVHIGDVPVMAKSNACILHNFSTQKLIE 140
Query: 96 LKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKD 155
E+ + GGYFI+NG ERV V L +Y +V RE V V
Sbjct: 141 HGEDPNDPGGYFIINGSERVI--VGLEDLSYNKIIVD------RESVGGNTVFKAKVYSS 192
Query: 156 QSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKK 215
KL ++ + + G +PV + +AL +D EI ++ DE +
Sbjct: 193 IVGYRAKLELVMKNDGLIVARIPGSPVDIPVVTLTRALGLESDREIAAAVSLV-DEIQNE 251
Query: 216 EKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVI 275
+G+ + D+ T + +I + P G+ E AET++
Sbjct: 252 LEGS-------------FEKAGDVP--TAKDAIVYISKRIAP---GMLEEFQIKRAETLL 293
Query: 276 RDYIFVHLN----DNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIY 331
+ HL + +K L KL L D+ D N+ I G ++
Sbjct: 294 DWGLLPHLGKHPENRKEKAQFLGEAACKLLELKLGWISPDDKDHYGNKVIKFAGQMLADL 353
Query: 332 LKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRL 391
+ + +R K ++E +G+K + +I + T +L
Sbjct: 354 FRTAFRNLVRDMKY----QLERSGQKRGI---------------NAVAAAIRPGIITDKL 394
Query: 392 --ATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT---SVRKLLPESW 446
A TG + R G T +R N+L IS R + S RT R L +
Sbjct: 395 NNAIATGNWGRGRVGVTQLLDRTNYLSTISHLRRIQSPLS----RTQPNFEARDLHATHF 450
Query: 447 GFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLP 506
G +CP TP+G CGL+ ++ + ++ S + + T + +
Sbjct: 451 GRICPSETPEGSNCGLVKNLALSGIISVNVPSEEIVEKLYDLGT--------IHFFDAKE 502
Query: 507 KLVKSGPPAVLSVLLDGRVVGVIP-SSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSL 565
+ K G + +DGR++G +++ + + LRR S I + + + +
Sbjct: 503 DVKKDGA----RIFVDGRLIGYYKDGAQLAESLRDLRR-----NSKIHPHVGISFHKSEI 553
Query: 566 GGAYPGLYLFTSPPKFVRPV---------------RNISLPSEESQNIELIGPFEQVFM- 609
G+ LY+ + + +RP+ IS ++ +G E +
Sbjct: 554 EGSTKRLYVNCNAGRVLRPLIIIKDNKPLLTQDLLDKISKKLLSWTDLLRMGVLEMIDAN 613
Query: 610 -EIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMG 668
E C D ++ TH E+ P +L A++ PY +HNQSPRN Y+ MAKQ++G
Sbjct: 614 EEENCYITLD--EKDTKKHTHLEVFPPAILGAGASIIPYPEHNQSPRNTYESAMAKQSLG 671
Query: 669 FSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAM 728
FS + + + + PQTPIV T G+++ P G N +VAVL + GY++EDA+
Sbjct: 672 FSTPMMNTSTYVRQHLMLYPQTPIVNTKAMKLLGLEDRPAGQNCVVAVLPFDGYNIEDAI 731
Query: 729 ILNKSSVDRGMCHG---QIYQTET------------IDLSDDGNKVDRGQKLFRRNKDAK 773
+L+++SVDRG+ +IY E I ++D + +G+K +R
Sbjct: 732 VLSRASVDRGLGRTFFFRIYDAEAKQYPGGMRDTFEIPNAEDNIRGYKGEKAYR------ 785
Query: 774 SLHSVIDSDGLPYVGQMIHPG-------------EPYCSIYDKTTNSWRTNSRKG---SE 817
+++ DG+ +H G E Y +++ +R ++ G SE
Sbjct: 786 ----LLEEDGVVASESPVHGGDILIGKTSPPRFMEEYREF--ESSGPYRRDTSIGVRPSE 839
Query: 818 SVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSG 877
+ VD V + N K IR R R P IGDKF+SRHGQKGV L D+P++
Sbjct: 840 TGVVDTVVMTQSNEGGKMYK--IRVRDMRIPEIGDKFASRHGQKGVLGILAKAEDLPYTA 897
Query: 878 VTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
G+ PD++INPHAFPSRMT+ M +ES+ K
Sbjct: 898 -DGISPDVLINPHAFPSRMTVGMFMESICGK 927
>gi|190407518|gb|EDV10785.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Saccharomyces
cerevisiae RM11-1a]
Length = 881
Score = 228 bits (580), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 204/718 (28%), Positives = 320/718 (44%), Gaps = 81/718 (11%)
Query: 233 LAEVQDLSLTTRLQCLQHIGEHFQPV----IDGLQSESYYAVAETVIRDYIFVHLNDNND 288
L E L + T+ Q L++IG + + + LQ E A+A TVI ++ V D +
Sbjct: 19 LEESSKLDIYTQQQALEYIGAKVKTMRRQKLTILQ-EGIEAIATTVIA-HLTVEALDFRE 76
Query: 289 KFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQ 348
K + M +++ + + + D+ D + N+ + L G LI++ ++ + + K I
Sbjct: 77 KALYIAMMTRRVVMAMYNPKMIDDRDYVGNKRLELAGQLISLLFEDLFKKFNNDFKLSID 136
Query: 349 DEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQ 408
++ + ++ L +I S I + + + TG + + +RAG T
Sbjct: 137 KVLKKPNRAMEYDALLSINV-----HSNNITSGLNRAISTGNWSLKRFK--MERAGVTHV 189
Query: 409 AERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMT 467
RL+++ + + + F R S R L P +G LC TP+GE CGL+ ++
Sbjct: 190 LSRLSYISALGMMTRI--SSQFEKSRKVSGPRALQPSQFGMLCTADTPEGEACGLVKNLA 247
Query: 468 STCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAV-LSVLLDGRVV 526
+ + D + L ++GV I L+ S + V L+G ++
Sbjct: 248 LMTHITT---------DDEEEPIKKLCYVLGVEDI----TLIDSASLHLNYGVYLNGTLI 294
Query: 527 GVI--PSSEIEKVVAHLRRL-KVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVR 583
G I P+ + + HLRR KVS ++ + +++ T + R
Sbjct: 295 GSIRFPTKFVTQF-RHLRRTGKVSE-----------FISIYSNSHQMAVHIATDGGRICR 342
Query: 584 PVRNISLPSEESQNIELIGPFE-----QVFMEIRCPDGGDGGRRN----------AFPA- 627
P+ +S ++I L + F+++ + D N P+
Sbjct: 343 PLIIVSDGQSRVKDIHLRKLLDGELDFDDFLKLGLVEYLDVNEENDSYIALYEKDIVPSM 402
Query: 628 THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
TH EI P +L VA L PY HNQSPRN YQC M KQ +G R D LY +
Sbjct: 403 THLEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFKRIDTLLYLMTY 462
Query: 688 PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
PQ P+V+T T D+ P G NA VAV++Y+GYD+EDA++LNKSS+DRG + +
Sbjct: 463 PQQPMVKTKTIELIDYDKLPAGQNATVAVMSYSGYDIEDALVLNKSSIDRGFGRCETRRK 522
Query: 748 ETIDLSDDGNKVDR--GQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTT 805
T L N G N D H + DGL VG + G+ Y + T
Sbjct: 523 TTTVLKRYANHTQDIIGGMRVDENGDPIWQHQSLGPDGLGEVGMKVQSGQIYINKSVPTN 582
Query: 806 NSWRTNSR---------------KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPII 850
++ N +G E +D V M S N + R R P +
Sbjct: 583 SADAPNPNNVNVQTQYREAPVIYRGPEPSHIDQVM--MSVSDNDQALIKVLLRQNRRPEL 640
Query: 851 GDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
GDKFSSRHGQKGVC + DMPF+ G+ PD+I+NPH FPSRMT+ ++E ++ K
Sbjct: 641 GDKFSSRHGQKGVCGIIVKQEDMPFND-QGIVPDIIMNPHGFPSRMTVGKMIELISGK 697
>gi|325186944|emb|CCA21488.1| PREDICTED: hypothetical protein [Albugo laibachii Nc14]
Length = 1234
Score = 228 bits (580), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 254/964 (26%), Positives = 403/964 (41%), Gaps = 150/964 (15%)
Query: 28 DEGLSEMFDH-CRQAKISYTGKLMADVEFQYLDAGS--PVVRERFN-----------FGQ 73
D S MF H R ++Y+ L DV Q A + P E G
Sbjct: 138 DGSTSVMFPHEARLRNLTYSAPLYVDVVCQKFQANATGPTKIEEMEPYDQVETPKEFIGM 197
Query: 74 FPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRS 133
P+ML+++ C L ++L L E + GGYF++NG E+V + N+ +S
Sbjct: 198 VPIMLRSQYCVLTHKTDKELTELNECVYDQGGYFLINGSEKVLIAQERMSNNHVYCFRKS 257
Query: 134 SFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNG-SVRLGFWLQGK-EYL---LPVGI 188
++ V VR S++ +++Y G S G ++ Y+ +PV I
Sbjct: 258 GVSKYSWVCETRSHVEHGVRP-TSTMYVQMYQRSGGKSAISGNQIRAVIPYIRQDIPVVI 316
Query: 189 VLKALVDTNDLEIFNHLTCCYD-------EKYKKEKGAVGSPLVSERVKIILAEVQDLSL 241
+ +AL D EI H+ CYD E++K P + E I EV
Sbjct: 317 IFRALGFVADREILEHI--CYDFTDVELMERFK--------PSLEEAFVIQEQEV----- 361
Query: 242 TTRLQCLQHIGEHFQPVIDGLQSESYYA--VAETVIRDYIFVHLNDNNDKFNLLIFMLQK 299
L IG + G YA + + + ++ V ++ K L +++ K
Sbjct: 362 -----ALDFIGRRGSAINVGKADRIRYAQDILQKEMLPHVGVEDHNETKKAYFLGYVVHK 416
Query: 300 LFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFD 359
L D+ D N+ + L G L+ + + + K +Q ++N GK F+
Sbjct: 417 LLMCSLGRIGEDDRDHYGNKRLDLAGPLLGSLFRILFKKLTKDVKTYLQKCVDN-GKDFN 475
Query: 360 FFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFIS 419
LA I+ S+ I + L TG Q +AG + RL + +S
Sbjct: 476 L-TLA-IR-------SRTITNGLRYSLATGNWGMQ---KTASKAGVSQVLNRLTYASSLS 523
Query: 420 FFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSR 479
R ++ G + R+L WG +CP TP+G+ GL+ ++ + S +
Sbjct: 524 HLRRLNTPLGREG-KQAQPRQLHNTHWGMICPAETPEGQAVGLVKNLALMAYI-SVGSPQ 581
Query: 480 GNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVA 539
I +F L + P+++ P + ++G VGV E ++V
Sbjct: 582 APILEF-------LEEWATENLEEIKPQII----PHSTKIFVNGNWVGV--HREPNELVR 628
Query: 540 HLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPV----RNISLPSEES 595
LR L+ + D EV + + L ++T + RP+ N L +E
Sbjct: 629 TLRSLR----RCVDIDAEVSVIRDLMNRE---LRIYTDAGRVCRPLFIVEENQLLLQKEQ 681
Query: 596 ----QN----------------IELIGPFEQ--VFMEIRCPDGGDGGRRNAFPATHEEIH 633
QN +ELI E+ + + D G G ++ TH EIH
Sbjct: 682 VVKLQNHKITNYRWHNLLTDGVVELIDTEEEEVCMIAMEPKDVGLGTQQ----YTHCEIH 737
Query: 634 PTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIV 693
P+ +L + A++ P+ DHNQSPRN YQ M KQ MG + R D L PQ P+V
Sbjct: 738 PSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVYCSNFRARMDTMANVLNYPQKPLV 797
Query: 694 RTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGM-------C------ 740
T E P+G NAIV + +YTGY+ ED++I+N+S++DRG+ C
Sbjct: 798 TTRAMEFLHFRELPSGINAIVGIASYTGYNQEDSLIMNQSAIDRGLFRSTFYRCYVDQER 857
Query: 741 ----HGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIH---- 792
HG T + ++ K R L R+ S H +D+DGL G +
Sbjct: 858 NKSPHGGSAATALVSNCEEFEKPSRDNCLGLRH---GSYHK-LDADGLVAPGTRVSGNDI 913
Query: 793 --------PGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRH 844
P S+ + + S + E+ +D +V + + + + +RFR+
Sbjct: 914 IIGKTSPLPVSEDSSLEQRHQKRDASTSLRSHENGIID--SVMLTTNADGFKFTKVRFRN 971
Query: 845 TRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLES 904
R P IGDKF+SRHGQKG + DMPF+ + G+ PD+I+NPHA PSRMT+ L+E
Sbjct: 972 IRIPQIGDKFASRHGQKGTIGMTYRQEDMPFT-LEGITPDIIVNPHAIPSRMTVGHLIEC 1030
Query: 905 VAAK 908
+ K
Sbjct: 1031 LLGK 1034
>gi|329765755|ref|ZP_08257324.1| DNA-directed RNA polymerase subunit beta [Candidatus
Nitrosoarchaeum limnia SFB1]
gi|329137821|gb|EGG42088.1| DNA-directed RNA polymerase subunit beta [Candidatus
Nitrosoarchaeum limnia SFB1]
Length = 1115
Score = 228 bits (580), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 251/991 (25%), Positives = 408/991 (41%), Gaps = 181/991 (18%)
Query: 15 LVRHHIESFDYMLDEGLSEMFDHCRQAKI--------------------------SYTGK 48
+ R H+ SFD L+ GL + + Q +I S T
Sbjct: 21 IARQHLNSFDEFLERGLQSIINEVGQIEIENAEYPYKIQLGKVKLQQPRMMELDGSITHI 80
Query: 49 LMADVEFQYLDAGSPVVRE------------RF-NFGQFPVMLKTRRCHLQGADSQKLVS 95
A+ + + +PV+ E RF + G PVM K+ C L +QKL+
Sbjct: 81 TPAEARLRNVSYSAPVMMEASVVEDGKILESRFVHIGDVPVMAKSNACILHNFSTQKLIE 140
Query: 96 LKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKD 155
E+ + GGYFI+NG ERV V L +Y +V RE V V
Sbjct: 141 HGEDPNDPGGYFIINGSERVI--VGLEDLSYNKIIVD------RESVGGNTVFKAKVYSS 192
Query: 156 QSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKK 215
KL ++ + + G +PV + +AL +D EI ++ DE +
Sbjct: 193 IVGYRAKLELVMKNDGLIVARIPGSPVDIPVVTLTRALGLESDREIAAAVSLV-DEIQNE 251
Query: 216 EKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVI 275
+G+ + D+ T + +I + P G+ E AET++
Sbjct: 252 LEGS-------------FEKAGDVP--TAKDAIVYISKRIAP---GMLEEFQIKRAETLL 293
Query: 276 RDYIFVHLN----DNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIY 331
+ HL + +K L KL L D+ D N+ I G ++
Sbjct: 294 DWGLLPHLGKHPENRKEKAQFLGEAACKLLELKLGWISPDDKDHYGNKVIKFAGQMLADL 353
Query: 332 LKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRL 391
+ + +R K ++E +G+K + +I + T +L
Sbjct: 354 FRTAFRNLVRDMKY----QLERSGQKRGI---------------NAVSAAIRPGIITDKL 394
Query: 392 --ATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT---SVRKLLPESW 446
A TG + R G T +R N+L IS R + S RT R L +
Sbjct: 395 NNAIATGNWGRGRVGVTQLLDRTNYLSTISHLRRIQSPLS----RTQPNFEARDLHATHF 450
Query: 447 GFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLP 506
G +CP TP+G CGL+ ++ + ++ S + + T + +
Sbjct: 451 GRICPSETPEGSNCGLVKNLALSGIISVNVPSEEIVEKLYDLGT--------IHFFDAKE 502
Query: 507 KLVKSGPPAVLSVLLDGRVVGVIP-SSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSL 565
+ K G + +DGR++G +++ + + LRR S I + + + +
Sbjct: 503 DVKKDGA----RIFVDGRLIGYYKDGAQLAESLRDLRR-----NSKIHPHVGISFHKSEI 553
Query: 566 GGAYPGLYLFTSPPKFVRPV---------------RNISLPSEESQNIELIGPFEQVFM- 609
G+ LY+ + + +RP+ IS ++ +G E +
Sbjct: 554 EGSTKRLYVNCNAGRVLRPLIIIKDNKPLLTQDLLDKISKKLLSWTDLLRMGVLEMIDAN 613
Query: 610 -EIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMG 668
E C D ++ TH E+ P +L A++ PY +HNQSPRN Y+ MAKQ++G
Sbjct: 614 EEENCYITLD--EKDTKKHTHLEVFPPAILGAGASIIPYPEHNQSPRNTYESAMAKQSLG 671
Query: 669 FSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAM 728
FS + + + + PQTPIV T G+++ P G N +VAVL + GY++EDA+
Sbjct: 672 FSTPMMNTSTYVRQHLMLYPQTPIVNTKAMKLLGLEDRPAGQNCVVAVLPFDGYNIEDAI 731
Query: 729 ILNKSSVDRGMCHG---QIYQTET------------IDLSDDGNKVDRGQKLFRRNKDAK 773
+L+++SVDRG+ +IY E I ++D + +G+K +R
Sbjct: 732 VLSRASVDRGLGRTFFFRIYDAEAKQYPGGMRDTFEIPNAEDNIRGYKGEKAYR------ 785
Query: 774 SLHSVIDSDGLPYVGQMIHPG-------------EPYCSIYDKTTNSWRTNSRKG---SE 817
+++ DG+ +H G E Y +++ +R ++ G SE
Sbjct: 786 ----LLEEDGVVASESPVHGGDILIGKTSPPRFMEEYREF--ESSGPYRRDTSIGVRPSE 839
Query: 818 SVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSG 877
+ VD V + N K IR R R P IGDKF+SRHGQKGV L D+P++
Sbjct: 840 TGVVDTVVMTQSNEGGKMYK--IRVRDMRIPEIGDKFASRHGQKGVLGILAKAEDLPYTA 897
Query: 878 VTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
G+ PD++INPHAFPSRMT+ M +ES+ K
Sbjct: 898 -DGISPDVLINPHAFPSRMTVGMFMESICGK 927
>gi|294890932|ref|XP_002773362.1| DNA-directed RNA polymerase I subunit, putative [Perkinsus marinus
ATCC 50983]
gi|239878463|gb|EER05178.1| DNA-directed RNA polymerase I subunit, putative [Perkinsus marinus
ATCC 50983]
Length = 365
Score = 227 bits (579), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 144/369 (39%), Positives = 203/369 (55%), Gaps = 31/369 (8%)
Query: 297 LQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRK-----GKKLIQDEI 351
+KL +LV DN D++ QE+LLPG L LKE L+ L + KK Q ++
Sbjct: 7 FRKLMALVRGDIARDNADAMDVQELLLPGQLFGALLKEVLQSSLLRLEGALAKKSRQAQV 66
Query: 352 ENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAER 411
G+ + I+ + +E+ L TG + +++GLDLQQ G+TV A++
Sbjct: 67 -GKGRAPTVLSAELIRNTFMG--VCDVTKRMESFLATGNITSRSGLDLQQTTGFTVVADK 123
Query: 412 LNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCR 471
LN R++S FRAVHRG+ F ++TTSVRKLLPE+WGFLCPVHTPDG PCGLLNH+ + C+
Sbjct: 124 LNAYRYLSHFRAVHRGSFFQEMKTTSVRKLLPETWGFLCPVHTPDGTPCGLLNHLAAPCQ 183
Query: 472 -VASYYDSRGNIRDFSKMRTSILRVLIGVGMI-PSLPKLVKSGPPAVLSVLLDGRVVGVI 529
V G I + S +GV ++ S G V LDGRV+G +
Sbjct: 184 PVVRIASPEGVIPGLEEELAS-----LGVQLVRSSKTSTANYGAGENAYVTLDGRVLGKV 238
Query: 530 PSSEIEKVVAHLRRLKVSA-ASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNI 588
S +E V LRRLK+ +P DLE+ V ++ GL+LFT P + VRPVR++
Sbjct: 239 ARSRLEAVAEELRRLKIDKDCPGVPADLEI--VACQTPASFEGLWLFTGPCRMVRPVRDL 296
Query: 589 SLPSEESQNIELIGPFEQVFMEIRCP--DGGDGGRRNAFPA------THEEIHPTGMLSV 640
+ + N EL+GP EQVF++I D + ++ P TH E+ P MLSV
Sbjct: 297 A-----TGNEELVGPMEQVFLKIAATREDLEASTKTSSVPENIPMKYTHIELSPISMLSV 351
Query: 641 VANLTPYSD 649
+A LTP+S+
Sbjct: 352 IAGLTPFSN 360
>gi|320166143|gb|EFW43042.1| DNA-directed RNA polymerase II subunit RPB2 [Capsaspora owczarzaki
ATCC 30864]
Length = 1729
Score = 227 bits (579), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 236/947 (24%), Positives = 409/947 (43%), Gaps = 126/947 (13%)
Query: 36 DHCRQAKISYTGKLMADVE---FQYLDAG---SPVVR--ERFNFGQFPVMLKTRRCHLQG 87
+ R ++Y +L +++ F+Y + G P V+ ++ GQ P+ML+++ C L
Sbjct: 123 NEARLRNLTYACRLYVNLKREMFRYDENGVEEPPEVKILDKVYLGQIPMMLRSKNCALFN 182
Query: 88 ADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAV 147
+L + E + GGYF++NG E+V ++ ++ + V R Y+ A
Sbjct: 183 KKDYELEKMNECPYDQGGYFVINGSEKV----LIAQERMANNNVYVFHRKPPAKYSYVAE 238
Query: 148 VIRCVRKDQSSV-TLKLYYLLNGSV-------RLGFWLQGKEYLLPVGIVLKALVDTNDL 199
+ + TL L G R+ L + +P+ +V +AL +D
Sbjct: 239 IRSALETGHRPANTLYTKMLTRGQSKGESAGNRIQCTLPYIKTDIPIVVVFRALGFVSDR 298
Query: 200 EIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVI 259
++ +H+ Y ++ + E ++ L E L + + L IG+ + ++
Sbjct: 299 DVLDHVIYDYQDQE-----------MMEMLRFSLEEA--LPIQEQPVALDFIGK--RGLV 343
Query: 260 DGLQSESYYAVAETVIRDYIFVHL----NDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDS 315
G E+ A+ +++ + H+ + K +++ +L D+ D
Sbjct: 344 QGATRENRIRYAKEILQKELLPHVGVTDHSETKKAYFFGYIVHRLLQAALGRRELDDRDH 403
Query: 316 LQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPS 375
N+ L G L+ + ++ K +Q +++ K+ +F LA K +
Sbjct: 404 YGNKRCDLAGALVGGLFRLLFRKLIKDVKASLQKDVD---KRHEFNLLAAFK-------A 453
Query: 376 KQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRT 435
K I + L TG + RAG + RL + +S R ++ G +
Sbjct: 454 KIISDGLRYSLATGNWGDAKKAH-ESRAGVSQVLNRLTYASTLSHLRRLNSPIGREG-KL 511
Query: 436 TSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRV 495
R+L WG +CP TP+G+ CGL+ ++ ++ + I + T
Sbjct: 512 AKPRQLQNTQWGVMCPAETPEGQACGLVKNLALMAYISVGSPALHIIEFLEEWATE---- 567
Query: 496 LIGVGMIPSLPKLVKSGPPAVLS---VLLDGRVVGV-IPSSEIEKVVAHLR-RLKVSAA- 549
L ++ P ++L + ++G VG+ ++E+ + +A LR R +S
Sbjct: 568 -----------NLEETTPQSILQSTKIFVNGCWVGIHAQANELVRTLAQLRQRTDISPEI 616
Query: 550 SVIPDDLEVGYVPLSLGG-AYPGLYLFTSPPKFVR-----PVRNISLPSEESQNI----- 598
S++PD E S G A L++ +R ++ + ++I
Sbjct: 617 SIVPDIRERELRIYSDAGRAMRPLFVVEDERLSIRREHIDALKQAAQADRAGEHIDNPMR 676
Query: 599 --ELIGPF---------EQVFMEIRCPDGGDGGRRNAFPA-----THEEIHPTGMLSVVA 642
ELI E+ M P+ D RR A TH EI+P +L V A
Sbjct: 677 WPELITTGVIEYIDTQEEETRMIAMHPEDLDYARREGRGAYCSTHTHCEINPAMILGVCA 736
Query: 643 NLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYG 702
++ P+ DHNQSPRN YQ M KQ MG + + R D + L PQ P+ T +
Sbjct: 737 SIIPFPDHNQSPRNCYQSAMGKQAMGVYISNFQVRLDTMSHTLYYPQKPLTTTRSMEYLH 796
Query: 703 IDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRG 762
D P G NAIVA+ Y+GY+ ED++++N+S++DRG+ Y++ ++ G +D G
Sbjct: 797 FDSLPAGMNAIVAISVYSGYNQEDSVVMNQSAIDRGLFRSLFYRSYKDEVKPAG--LDVG 854
Query: 763 QKLFRRNK---DAKSLHSV---IDSDGLPYVGQMIHPGEPY-----CSIYDKTTNSWRTN 811
+ F + A HS +D+DGL G + G+ + I D+ +T
Sbjct: 855 DEEFEKPSLEIVAGMRHSSYDKLDADGLVAPGTRV-SGDDFIIGKTTPIPDEKNELAQTM 913
Query: 812 SR----------KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQK 861
R + +E+ VD V + + + + +R R R P IGDKF+SRHGQK
Sbjct: 914 KRYRKRDASTALRSTENGIVDTVMLSVNEDGH--RFVKVRVRGIRIPQIGDKFASRHGQK 971
Query: 862 GVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
G C + DMP++ G+ PD+IINPHA PSRMTI L+E + K
Sbjct: 972 GTCGITYRQEDMPYNA-EGITPDIIINPHAIPSRMTIGHLIECLQGK 1017
>gi|408402778|ref|YP_006860761.1| DNA-directed RNA polymerase subunit B [Candidatus Nitrososphaera
gargensis Ga9.2]
gi|300521500|gb|ADK25961.1| RNA polymerase B [Candidatus Nitrososphaera gargensis]
gi|408363374|gb|AFU57104.1| DNA-directed RNA polymerase subunit B [Candidatus Nitrososphaera
gargensis Ga9.2]
Length = 1116
Score = 227 bits (579), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 250/989 (25%), Positives = 415/989 (41%), Gaps = 176/989 (17%)
Query: 15 LVRHHIESFDYMLDEGLSEMFDHCRQAKI--------------------------SYTGK 48
+ R H+ S++ ++ GL + D + +I S T
Sbjct: 21 VARQHLNSYNEFMERGLQSIIDEVGEIEIETAEYPYKIKLGKIKLQQPRIMELDGSITHV 80
Query: 49 LMADVEFQYLDAGSPVVRE------------RF-NFGQFPVMLKTRRCHLQGADSQKLVS 95
+ + L SPV+ E RF + G PVM+K+ C L KL+
Sbjct: 81 APMEARLRNLTYASPVMLECSVVEDGKILESRFIHIGDMPVMVKSNTCILHNLPESKLIE 140
Query: 96 LKEEAAEMGGYFILNGLERV--------FRSVILPKQNYPMSMV-RSSFRDRREGYTDKA 146
E+ + GGYFI+NG ERV + +I+ + +++ ++ GY K
Sbjct: 141 FGEDPRDPGGYFIINGSERVIVGLEDLSYNKIIVDAEEATGTLLYKAKVYSSIVGYRAKL 200
Query: 147 VVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLT 206
++ +R D S VT + G +P+ +++AL +D +I + ++
Sbjct: 201 ELV--MRPDGSIVT---------------KIPGSPVDIPLITLIRALGLESDKDIADSVS 243
Query: 207 CCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSES 266
+ + + ++ + D++ T + +I + P G+ E
Sbjct: 244 L--------------NETIQDELEPSFEKAGDVN--TSRDAIVYISKRIAP---GMLEEF 284
Query: 267 YYAVAETVIRDYIFVHLNDNNDKFNLLIFML----QKLFSLVDHTSVSDNPDSLQNQEIL 322
AET++ + H+ N D + L KL L +D+ D N+ I
Sbjct: 285 QIKRAETLLDWGLLPHIGKNPDNRHEKALFLGEAASKLIELKLGWIDADDKDHYGNKVIK 344
Query: 323 LPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSI 382
G ++ + + +R K ++E +G+K I V + +
Sbjct: 345 FAGQMLADLFRTAFRNLIRDMKY----QLERSGQK------RGINAVAAAVRPGIVSDKL 394
Query: 383 ETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLL 442
+ TG + R G T +R N++ IS R + S + R L
Sbjct: 395 NNAIATGNWG-------RGRVGVTQLLDRTNYMSTISHLRRIQSPLSRSQ-PNFEARDLH 446
Query: 443 PESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMI 502
+G +CP TP+G CGL+ ++ + ++ N++ S T L L +
Sbjct: 447 ATHFGRICPAETPEGSNCGLVKNLALSAIISV------NVQ--SAEVTEKLYELGVQNVE 498
Query: 503 PSLPKLVKSGPPAVLSVLLDGRVVGVIPSSE-IEKVVAHLRRLKVSAASVIPDDLEVGYV 561
+ L +SG V +DGR++G + E + + +RR + + P VG
Sbjct: 499 DAREDLRESG----TRVFVDGRLIGYVEKGEHLSDTLRSMRR----SGKIHP---HVGIY 547
Query: 562 PLSLGG--AYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFME--------- 610
S A LY+ + + +RP+ + N E+I + F+
Sbjct: 548 LYSSQNENATKRLYISCNAGRVLRPLVVLRDGKPLVTN-EVIEKVSKKFLSWNDLLYMGV 606
Query: 611 IRCPDGGDGGRRNAFPA----------THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQC 660
I D + N + A TH EI P+ +L V A++ PY +HNQSPRN Y+
Sbjct: 607 IELVDANE--EENCYVAIDPKKLEPKHTHLEIFPSAILGVGASIIPYPEHNQSPRNTYES 664
Query: 661 QMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYT 720
MAKQ++GFS + + + + PQTP+V T G+++ PTG NA+VAVL +
Sbjct: 665 AMAKQSLGFSTPLMNASTYVRQHFMLYPQTPVVSTKAINLLGLEDRPTGQNAVVAVLPFE 724
Query: 721 GYDMEDAMILNKSSVDRGMCHG---QIYQTET------------IDLSDDGNKVDRGQKL 765
GY++EDA++ NKSSVDRG+ +IY+ E + D + RG+K
Sbjct: 725 GYNIEDAVVFNKSSVDRGLGRTFFYRIYEAEAKQYPGGMKDNFELPQPDANIRGYRGEKA 784
Query: 766 FR-RNKDAKSLHSVIDSDGLPYVGQMIHPG--EPYCSIYDKTTNSWRTNSRKG---SESV 819
+R +D +H + + G +G+ P E Y + +R ++ G SE+
Sbjct: 785 YRLLEQDGAIMHEAVVNGGDILIGRTSPPRFMEEYKEF--EVKGPYRRDTSVGVRPSENG 842
Query: 820 FVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVT 879
VD V V S + IR R R P IGDKF+SRHGQKGV L D+P++
Sbjct: 843 VVDTVIV--TQSVEGGKMYKIRVRDMRIPEIGDKFASRHGQKGVVGMLVNQEDVPYTE-D 899
Query: 880 GMRPDLIINPHAFPSRMTIAMLLESVAAK 908
G+ PD++INPHAFPSRMT+ +ES+ K
Sbjct: 900 GVVPDIMINPHAFPSRMTVGQFMESLGGK 928
>gi|302781178|ref|XP_002972363.1| hypothetical protein SELMODRAFT_172903 [Selaginella moellendorffii]
gi|300159830|gb|EFJ26449.1| hypothetical protein SELMODRAFT_172903 [Selaginella moellendorffii]
Length = 1178
Score = 227 bits (578), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 226/894 (25%), Positives = 383/894 (42%), Gaps = 110/894 (12%)
Query: 71 FGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSM 130
G+ P+ML++ C L + L L E + GGYFI+NG E+V ++ ++ +
Sbjct: 142 IGKVPIMLRSSYCTLYQNSDKDLTELGECPYDQGGYFIINGSEKV----LIAQEKMSTNH 197
Query: 131 VRSSFRDRREGYTDKAVVIRCVRKDQS--SVTLKLYYLLNGSVRLGFWLQGKEYL----- 183
V F+ R+ +R + + Q+ + ++ + L + G +Y+
Sbjct: 198 V-YVFKKRQPNKYAYVAEVRSMAESQNRPASSMFVRMLSRAGAKAG---SSGQYIRATLP 253
Query: 184 -----LPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQD 238
+P+ +V +AL D +I H+ CYD + E ++ L E
Sbjct: 254 YIKQEIPIIVVFRALGFVADKDILEHI--CYD---------FSDTAMMELLRPSLEEA-- 300
Query: 239 LSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLN----DNNDKFNLLI 294
+ + L +IG+ V G+ E A+ +++ + H+ K
Sbjct: 301 FVIQNQQVALDYIGKRGSTV--GVTREKRIKYAKDILQKEMLPHVGVGEYCETKKAYFFG 358
Query: 295 FMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENN 354
+++ +L D+ D N+ + L G L+ ++ + + +Q + +N
Sbjct: 359 YIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGSLFRQLFRKLTKDVRAYLQKCV-DN 417
Query: 355 GKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNF 414
GK+ NLA K +K I + ++ L TG + RAG + RL +
Sbjct: 418 GKEV---NLAYAVK------AKTITSGLKYSLATGNWGQANSGN--ARAGVSQVLNRLTY 466
Query: 415 LRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVAS 474
+S R ++ G R+L WG +CP TP+G+ CGL+ ++
Sbjct: 467 ASTLSHLRRLNSPIGREGRLLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMA---- 522
Query: 475 YYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEI 534
Y + G+ + + V + + ++ + P + ++G VG+ E
Sbjct: 523 -YITVGSA-------ANPILVFLEEWSTENFEEISPAVIPNATKIFVNGAWVGI--HREP 572
Query: 535 EKVVAHLRRLK----VSAASVIPDDLEVGYVPL--SLGGAYPGLYLFTSPPKFVRPVRNI 588
E +V LR+L+ V+ + D+ + + L G L++ ++
Sbjct: 573 EHLVKTLRQLRRQVDVNTEVGVVRDIRLKELRLYTDYGRCSRPLFIVEKQRLLIKKSDIR 632
Query: 589 SLPSEESQN-----------IELIGPFEQ----VFMEIRCPDGGDGGRRNAFPATHE--E 631
+L +E+ IE + E+ + M I A+ T+ E
Sbjct: 633 ALQQKEAGENGWHELVSKGFIEYVDTEEEETTMISMTISDLVNARLNPEEAYSDTYTHCE 692
Query: 632 IHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTP 691
IHP+ +L V ++ P+ DHNQSPRN YQ M KQ MG V + R D Y L PQ P
Sbjct: 693 IHPSMILGVCGSIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKP 752
Query: 692 IVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETID 751
+V T + P G NAIVA+ Y+GY+ ED++I+N+SS+DRG Y++ +
Sbjct: 753 LVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSIFYRSYRDE 812
Query: 752 LSDDGNKVDRGQKLFRRNKDAKS-----LHSVIDSDGLP-----YVGQMIHPGEPYCSIY 801
G V ++ R N++ + + +D DG+ G+ + G+
Sbjct: 813 EKKAGTLVK--EEFERPNRETTTGMRHGSYDKLDDDGIAPPGTRVSGEDVIIGKTTPLAQ 870
Query: 802 DKT-TNSWRTNSR------KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKF 854
D+T T + R + R + SES +D V + N+ L + R R R P IGDKF
Sbjct: 871 DETGTQAQRYSKRDQSTCLRHSESGMIDQVLL-TTNADGL-RFVKTRVRSIRIPQIGDKF 928
Query: 855 SSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
SSRHGQKG + DMPF+ G+ PD+I+NPHA PSRMTI L+E + K
Sbjct: 929 SSRHGQKGTIGMTYTQEDMPFTQ-EGITPDIIVNPHAIPSRMTIGQLIECIMGK 981
>gi|168027816|ref|XP_001766425.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162682334|gb|EDQ68753.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1185
Score = 227 bits (578), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 234/900 (26%), Positives = 386/900 (42%), Gaps = 124/900 (13%)
Query: 71 FGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSM 130
G+ P+ML++R C L + L L E + GGYFI+NG E+V ++ ++ +
Sbjct: 149 IGKVPIMLRSRYCTLFENSDKDLTELGECPYDQGGYFIINGSEKV----LIAQEKMSTNH 204
Query: 131 VRSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLL------NGSVRLGFWLQGKEYL- 183
V F+ R+ +R + ++Q+ ++ + G + Y+
Sbjct: 205 V-YVFKKRQPNKYCYVAEVRSMAENQNRPPSGMFVRMLSRAGAKGGSSGQYIRATLPYIR 263
Query: 184 --LPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSL 241
+P+ +V +AL D +I H+ CYD + E ++ L E +
Sbjct: 264 TEIPIIVVFRALGFVADKDILEHI--CYD---------FSDTAMMELLRPSLEEA--FVI 310
Query: 242 TTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLN----DNNDKFNLLIFML 297
+ L +IG+ V G+ E A+ +++ + H+ K +++
Sbjct: 311 QNQQVALDYIGKRGSTV--GVTREKRIKYAKEILQKEMLPHVGVGEFCETKKAYFFGYII 368
Query: 298 QKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKK 357
+L L D+ D N+ + L G L+ + + + +Q ++N GK+
Sbjct: 369 HRLL-LCAIGGAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTKDVRGYLQKCVDN-GKE 426
Query: 358 FDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRF 417
NLA K +K I + ++ L TG + RAG + RL +
Sbjct: 427 I---NLAYAVK------AKTITSGLKYSLATGNWGQANTAGV--RAGVSQVLNRLTYAST 475
Query: 418 ISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYD 477
+S R ++ G + R+L WG +CP TP+G+ CGL+ ++ + +
Sbjct: 476 LSHLRRLNSPIGREG-KLAKPRQLHNSHWGMMCPAETPEGQACGLVKNLALMAYI-TVGS 533
Query: 478 SRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKV 537
+ I +F + ++ I +IP+ K + ++G VG+ + E+ +
Sbjct: 534 AANPILEFLEEWSTENFEEISPAVIPNSTK-----------IFVNGLWVGIHRNPEL--L 580
Query: 538 VAHLRRLKVSAASVIPDDLEVGYV-PLSLGGAYPGLYLFTSPPKFVRP------------ 584
V LR+L+ + + EVG V + L L L+T + RP
Sbjct: 581 VRTLRQLRRQ----VDVNTEVGVVRDIRL----KELRLYTDYGRCSRPLFIVEKQRLLIK 632
Query: 585 ---VRNISLPSEESQN----------IELIGPFEQVFMEIRCPDGGDGGRRN------AF 625
VR + + E S+N IE + E+ I RN +
Sbjct: 633 KQDVRALQM-KESSENSWYDLVSKGFIEYVDTEEEETTMISMTIADLVNARNNPEEAYSD 691
Query: 626 PATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHL 685
TH EIHP+ +L V ++ P+ DHNQSPRN YQ M KQ MG V + R D Y L
Sbjct: 692 TYTHCEIHPSMILGVCGSIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQLRMDTLAYVL 751
Query: 686 QTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIY 745
PQ P+V T + P G NAIVA+ Y+GY+ ED++I+N+SS+DRG Y
Sbjct: 752 YYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSIFY 811
Query: 746 QTETIDLSDDGNKVDRGQKLFRRNKDAKS-----LHSVIDSDGLPYVGQMIH-------- 792
++ + G + ++ R N++ + + +D DGL G +
Sbjct: 812 RSYRDEEKKQGTLIK--EEFERPNRENTTGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGK 869
Query: 793 ----PGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNP 848
P + S + T ++ + SES +D V + N+ L + IR R R P
Sbjct: 870 TTPLPQDDNASQAQRYTKRDQSTCLRHSESGMIDQVLL-TTNADGL-RFVKIRVRSIRIP 927
Query: 849 IIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
IGDKFSSRHGQKG + DMP++ G+ PD+I+NPHA PSRMTI L+E + K
Sbjct: 928 QIGDKFSSRHGQKGTVGMTYTQEDMPWTQ-EGITPDIIVNPHAIPSRMTIGQLIECIMGK 986
>gi|50303683|ref|XP_451784.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49640916|emb|CAH02177.1| KLLA0B05577p [Kluyveromyces lactis]
Length = 1221
Score = 226 bits (576), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 245/923 (26%), Positives = 376/923 (40%), Gaps = 138/923 (14%)
Query: 71 FGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSM 130
G+ P+ML+++ C L L LKE +MGGYFI+NG E+V L Q
Sbjct: 161 IGRVPIMLRSKYCLLDDLTESDLYRLKECPFDMGGYFIINGSEKV-----LIAQERSAGN 215
Query: 131 VRSSFRDRREGYTDKAVVIRCVRKDQS----SVTLKLYYLLNGSVR-LGFWLQGKEYLLP 185
+ F+ IR + S ++ +KLY + R + L + +P
Sbjct: 216 IVQVFKKSAPSPISHIAEIRSALEKGSRFISTLQVKLYGREGSTSRTIKATLPYIKQDIP 275
Query: 186 VGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAE---VQDLSLT 242
+ I+ +AL D EI H+ CYD V + E +K + E +QD
Sbjct: 276 IVIIFRALGIIPDGEILEHI--CYD---------VNDWQMLEMLKPCVEEGFVIQD---- 320
Query: 243 TRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLND----NNDKFNLLIFMLQ 298
R L IG + G++ E A+ +++ H+ + K L +M+
Sbjct: 321 -RETALDFIGRRGTAL--GIKKEKRIQYAKDILQKEFLPHITQLEGFESRKAFFLGYMIN 377
Query: 299 KLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKF 358
+L D+ D + + L G L+ K R + +Q +E K F
Sbjct: 378 RLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLFRKLTRDILRFMQRSVEE-AKDF 436
Query: 359 DFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFI 418
N+K ++ + I ++ L TG Q + RAG + R + +
Sbjct: 437 ------NLKLAVK---ATTITAGLKYALATGNWGEQKK-SMSSRAGVSQVLNRYTYSSTL 486
Query: 419 SFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDS 478
S R + G + R+L WG +CP TP+G+ CGL+ +++ ++ D
Sbjct: 487 SHLRRTNTPIGRDG-KLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTDP 545
Query: 479 RGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVI--PSSEIEK 536
I+ L GM P L + P V ++G G+ P+ ++
Sbjct: 546 -----------LPIITFLNEWGMEP-LEDYIPHQSPDATRVFVNGVWHGIHRNPAKLVDT 593
Query: 537 VVAHLRRLKVSAASVIPDDLEVGYVPL--SLGGAYPGLYLFTSPPKFVRP--------VR 586
+ R+ ++ I D+ + + G Y L++ P+ R VR
Sbjct: 594 IRKLRRKGDITPEVSIVRDIREKELKIFTDAGRVYRPLFIVDENPETGRKELKVKKGHVR 653
Query: 587 NISLPS----------EESQN-----------IELIGPFEQVFMEIR------------- 612
+ L EE N +E I E+ + I
Sbjct: 654 KLMLTEYQDIEGGFDDEEEMNYTWTSLLNEGLVEYIDAEEEETILIAMQHEDLDPALLPV 713
Query: 613 --CPDGGDGGRR-----NAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQ 665
D D RR N+ TH EIHP+ +L V A++ P+ DHNQSPRN YQ M KQ
Sbjct: 714 ADSEDDLDPARRIRAIHNSNIFTHCEIHPSMILGVAASVIPFPDHNQSPRNTYQSAMGKQ 773
Query: 666 TMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDME 725
MG + R D L PQ P+ T E P G NAIVA+ Y+GY+ E
Sbjct: 774 AMGVFLTNYNVRMDTMANILYYPQKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQE 833
Query: 726 DAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSV---IDSD 782
D+MI+N+SS+DRG+ +++ G + + R + H +D D
Sbjct: 834 DSMIMNQSSIDRGLFRSLFFRSYMDQEKRIGMSITESFEKPHRTNTLRMKHGTYDKLDDD 893
Query: 783 GLPYVGQMIHPGEPYCSIYDKTT---------------NSWRTNSR--KGSESVFVDYVA 825
GL G + + I KTT +S R S + +E+ VD V
Sbjct: 894 GLIAPGVRVSGDD---MIIGKTTPIPPDAEELGQRTAFHSKRDASTPLRSTENGIVDQVL 950
Query: 826 VDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDL 885
+ N + L + +R R T+ P IGDKF+SRHGQKG + DMPF+ G+ PDL
Sbjct: 951 I-TTNQEGL-KFVKVRVRTTKIPQIGDKFASRHGQKGTIGITYRTEDMPFTA-EGVVPDL 1007
Query: 886 IINPHAFPSRMTIAMLLESVAAK 908
IINPHA PSRMT+A L+E + +K
Sbjct: 1008 IINPHAIPSRMTVAHLIECLLSK 1030
>gi|343477106|emb|CCD11984.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 1186
Score = 226 bits (576), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 242/904 (26%), Positives = 387/904 (42%), Gaps = 129/904 (14%)
Query: 67 ERFNFGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNY 126
+ G+ P+MLK+ RC+L D ++L L E + GGYFI+NG E+V ++ ++
Sbjct: 163 QNMELGRIPIMLKSMRCNLLNKDEEELPRLNECPHDQGGYFIVNGTEKV----LIAQERQ 218
Query: 127 PMSMVRSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLL---NGSVRLGFWLQGKEYL 183
+ V + R + K++V + K ++ L Y +G L + + L
Sbjct: 219 AANHVYAFTRPKGLLCEIKSIVEGSLNKPRTLQILMPYKKSGPGHGYENLLCRVAQMDEL 278
Query: 184 LPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTT 243
+P+ I+ +AL +D EI T D K + E ++ + + L + T
Sbjct: 279 IPLFILFRALDMGSDKEILQ--TVVPDLK---------DAAMLEMLRGSMEDASTLQVFT 327
Query: 244 RLQCLQHIGEHF--QPVIDGLQSESYYAVAETVIRD---YIFVHLNDNNDKFNLLIFMLQ 298
R + L IG+ Q D LQ E+ + ++RD ++ V + K + +M+
Sbjct: 328 RDEALWFIGKRLGKQDSRDNLQREA----QDLLMRDLLPHMGVDCAADRSKCLFIGYMVH 383
Query: 299 KLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKF 358
+L L + D L ++ I + G L+T L + L R+ + + D N
Sbjct: 384 RLLLLALGRREDTDRDFLGHKRIDVAGSLLTFQLNQFLVQVRREMTRTVHDFSTNRSGVV 443
Query: 359 DFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFI 418
F + + S+ I + L TG ++ + G + RL + +
Sbjct: 444 SFGRILH---------SRLITDGMRRCLATGNFGDLKSGNI--KTGVSQTLNRLTYSSSL 492
Query: 419 SFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDS 478
S R + S A + T R L WG++CPV TP+G GLL ++ C V+ D
Sbjct: 493 SNLRRIQNPIS-ASSKATRPRNLHCTQWGYICPVETPEGGSIGLLKNLALMCLVSRGSDH 551
Query: 479 RGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGV---------- 528
G ++ T + L V V ++G ++GV
Sbjct: 552 TGVVQVVQSRTTGFHSI-----------TLADLADVRVARVFVNGTLIGVHADPERLLRE 600
Query: 529 ----IPSSEIEKVVAHLRRLKVSAASVIPDD---------LEVGYVPLSLG--------G 567
E+ V+ +R ++ V D +E V L G
Sbjct: 601 LRARRRGGELSNEVSVVRDIRDREIRVFSDGGRCLRPLFVVEKSRVKLQKGKIGELLEPS 660
Query: 568 AYPGLYLFTSPPKFVRP--VRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAF 625
A PG S + ++ V + E+S I + GP E +N F
Sbjct: 661 AAPGGRREISWSRVMKKGYVELVDCEEEDSLLIAM-GPSEV--------------GKNYF 705
Query: 626 PATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHL 685
+H E+ P+ +L + A++ PY +HNQSPRN YQ M KQ MG R D + L
Sbjct: 706 -YSHCEMDPSMILGICASIIPYPNHNQSPRNTYQSAMGKQAMGVYASNFNMRMDTTAHVL 764
Query: 686 QTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIY 745
PQ P+VRT + ++ P G NAIVA+ Y+GY+ ED++I+++S+V+RG +
Sbjct: 765 FYPQKPLVRTKAMSYMRSNDLPAGHNAIVAIACYSGYNQEDSIIMSRSAVERGFFRSVFW 824
Query: 746 QTETIDLSDDGNKVDRGQKLFRRNKDAKSLH------SVIDSDGL-----PYVGQMIHPG 794
++ K GQ++F D K H + +D+DGL P +G I G
Sbjct: 825 RS----YKASEEKKREGQEMF-EIPDRKVCHVKRADYTKLDTDGLIKPGIPVIGGDIIVG 879
Query: 795 E----PYCSIYDKTTNSWR------TNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRH 844
+ P D T + R + S + +E VD V + +N N K +R R
Sbjct: 880 KTIPIPESMREDTTLTNTRILKRDCSISSRTAEKGVVDRVML-TENKGNRFTK--VRIRT 936
Query: 845 TRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLES 904
+ P IGDKF S HGQKG + D+PF+ G+ PDLIINPHA PSRMT+A L+E+
Sbjct: 937 IKIPNIGDKFCSPHGQKGTNGIQFRQEDLPFNN-DGISPDLIINPHAIPSRMTVAHLIET 995
Query: 905 VAAK 908
+A K
Sbjct: 996 LAGK 999
>gi|84996571|ref|XP_953007.1| DNA-directed RNA polymerase II subunit [Theileria annulata strain
Ankara]
gi|65304003|emb|CAI76382.1| DNA-directed RNA polymerase II subunit, putative [Theileria annulata]
Length = 1223
Score = 226 bits (575), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 229/937 (24%), Positives = 397/937 (42%), Gaps = 117/937 (12%)
Query: 39 RQAKISYTGKLMADVEFQY-------LDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQ 91
R ++Y ++ D+E + L V R + P+M K+ C +G + Q
Sbjct: 150 RLRNLTYASQVYIDIEQETYINEDGKLTQTDSTVYPRVPLCRMPMMHKSSYCWTRGLNDQ 209
Query: 92 KLVSLKEEAAEMGGYFILNGLERVFRS---------VILPKQNYPMSMVRS--SFRDRRE 140
L + E + GGYF++NG ERV + + K+N S V S D +
Sbjct: 210 DLSDIGECVFDQGGYFVVNGGERVLIAQERMANNFVYVFNKKNSKYSAVAQLRSQPDFIQ 269
Query: 141 GYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLE 200
G T ++I + ++ + L Y+ + +PV I+ +AL +D +
Sbjct: 270 GVTSLTIMISNSQLTKNKMVAVLPYIRSD--------------IPVPILFRALGCISDRD 315
Query: 201 IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLS-LTTRLQCLQHIGEHFQPVI 259
I + + + ++ + ++ + +++ S T++ QCL IG+ P +
Sbjct: 316 ILQRIVYDFSD--------------TQMLSLMRSSLEECSEYTSQEQCLDFIGKR-GPTV 360
Query: 260 DGLQSESYYAVAETVIRDY---IFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
LQ E ET+ R + + + + K L +M+ +L D+ +
Sbjct: 361 GALQEERLNFAKETLRRHFLPHVGTEVGSESKKCFYLGYMIHRLLLNQLGRINEDDREHF 420
Query: 317 QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
+ + L G L+ + ++ ++++I+ +G+ FD + +
Sbjct: 421 GKKRLDLAGSLMASSFGTLFRKLAKDVERFLKNQID-SGRSFDVAGAIKSCSQITQGLQY 479
Query: 377 QIGTSIETMLKTGRLATQTGLDLQQ----------RAGYTVQAERLNFLRFISFFRAVHR 426
Q+ T + + + + R G + RL F ++S R ++
Sbjct: 480 QLLTGTHSKIIKIKFILLKKFTIWNWGRDKDGNVVRTGVSQVLNRLTFASYLSHLRRLNT 539
Query: 427 GASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFS 486
G + R+L WG +CP TP+G+ GL+ ++ C ++
Sbjct: 540 PLGREG-KMAKPRQLHNTHWGMICPAETPEGQAVGLVKNLALMCYIS-----------VG 587
Query: 487 KMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVI--PSSEIEKVVAHLRRL 544
+ ++IL L+ GM SL ++ + + L+G VGV P S + ++ R+
Sbjct: 588 SLSSTILDFLLEFGM-DSLDEISPILIKDRVKIFLNGTWVGVFNQPDSLVNVLLELRRKG 646
Query: 545 KVSAASVIPDDLEVGYVPL--SLGGAYPGLYLFTS-----PPKFVRPVRNISLPSE---E 594
+S+ + I D+ + + G + LY+ + + + N L E
Sbjct: 647 NISSETSIVRDIMSNEIKIFTDSGRSMRPLYIVENNRLLITKRHANMIENNQLTWSGLME 706
Query: 595 SQNIELIG-PFEQVFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQS 653
+ +E I E++ M PD TH EIHP+ +L V A++ P+ D NQS
Sbjct: 707 TGVVEYIDCEEEEICMIAMFPDDLVNNNNYCNSYTHCEIHPSMILGVCASIIPFPDQNQS 766
Query: 654 PRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAI 713
PRN YQ M KQ MG R D + L PQ P+V T + E P G N+I
Sbjct: 767 PRNTYQSAMGKQAMGVYSTNYNLRMDTLSHVLYYPQKPLVCTRSMEFLRFRELPAGINSI 826
Query: 714 VAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKV--------DRGQKL 765
VA++ YTGY+ ED++I+N+SS+DRG+ +T + + G+ V G+ L
Sbjct: 827 VAIMCYTGYNQEDSLIMNQSSIDRGLFRSVFNRTYSSEEKYLGSTVIESFTKPTSTGKFL 886
Query: 766 FRRNKDAKSLHSVIDSDGLPYVGQ-------MIHPGEPYCSIYDKTTNSWRTNSR----- 813
+ D +S +D+DGL G +I P S + + N R
Sbjct: 887 NLKRGD----YSKLDNDGLIEPGSRVLGDDIIIGRSSPVESDPNNPQYTPEMNLRMDCSC 942
Query: 814 --KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDI 871
+ +E+ VD V + + N + ++ R R P IGDKF+SRHGQKG +
Sbjct: 943 CLRPNENGVVDNVLLTVNNKG--CKFTKVKVRSIRVPQIGDKFASRHGQKGTIGMTFRME 1000
Query: 872 DMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
D+PF+ G+ PD+I+NPHA PSRMTI L+E + K
Sbjct: 1001 DLPFT-CDGIVPDIIMNPHAVPSRMTIGHLIECLLGK 1036
>gi|261327712|emb|CBH10689.1| DNA-directed RNA polymerase II subunit 2,putative [Trypanosoma brucei
gambiense DAL972]
Length = 1189
Score = 226 bits (575), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 237/895 (26%), Positives = 389/895 (43%), Gaps = 111/895 (12%)
Query: 67 ERFNFGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNY 126
+ G+ P+MLK+ RC+L D ++L L E + GGYFI+NG E+V ++ ++
Sbjct: 166 QNMELGRIPIMLKSMRCNLLNKDEEELPRLNECPHDQGGYFIVNGTEKV----LIAQERQ 221
Query: 127 PMSMVRSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLL---NGSVRLGFWLQGKEYL 183
+ V + R + K++V + K ++ L Y +G L + + L
Sbjct: 222 AANHVYAFTRPKGLLCEIKSIVEGSLNKPRTLQILMPYKKSGPGHGYENLLCRVAQMDEL 281
Query: 184 LPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTT 243
+P+ ++ +AL +D EI T D K + E ++ + + L + T
Sbjct: 282 IPLFVLFRALDMGSDKEILQ--TVVPDLK---------DVAMLEMLRGSMEDASTLEIFT 330
Query: 244 RLQCLQHIGEHF--QPVIDGLQSESYYAVAETVIRD---YIFVHLNDNNDKFNLLIFMLQ 298
R + L IG+ Q + LQ E+ + ++RD ++ V + K + +M+
Sbjct: 331 RDEALWFIGKRLGKQDSRENLQREA----QDLLMRDLLPHMGVDCAADRGKCLFIGYMVH 386
Query: 299 KLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKF 358
+L L + D L ++ I + G L+T L + L R+ + + D N G
Sbjct: 387 RLLLLALGRREDTDRDFLGHKRIDVAGSLLTFQLNQFLVQVRREMAQTVHDYSTNRGGVV 446
Query: 359 DFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFI 418
F + + +++ + + T LK+G + T G + RL + +
Sbjct: 447 SFGRILH-NRLITDGMRRCLATGNFGDLKSGNIKT----------GVSQTLNRLTYSSSL 495
Query: 419 SFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDS 478
S R + S A + T R L WG++CPV TP+G GLL ++ C V+ D
Sbjct: 496 SNLRRIQNPIS-ASSKATRPRNLHCTQWGYICPVETPEGGSIGLLKNLALMCLVSRGSDH 554
Query: 479 RGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGV---------- 528
G ++ T + L V V ++G ++GV
Sbjct: 555 TGVVQAVQSRITGFHSI-----------ALSDLADVRVARVFVNGTLIGVHGDPERLLRD 603
Query: 529 ----IPSSEIEKVVAHLRRLKVSAASVIPDD---------LEVGYVPLSLGGAYPGLYLF 575
E+ V+ +R ++ V D +E + L G +
Sbjct: 604 LRARRRGGELSNEVSIVRDIRDREIRVFSDGGRCLRPLFVVEKSRIKLQKAG----IGEL 659
Query: 576 TSPPKFVRPVRNISLPSEESQN-IELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIHP 634
P + R IS + +ELI E+ + I G +N F +H E+ P
Sbjct: 660 LEPSTTLGGRREISWNKVMKKGYVELIDCEEEDSLLIAMVPSEVG--KNYF-YSHCEMDP 716
Query: 635 TGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVR 694
+ +L + A++ PY +HNQSPRN YQ M KQ MG R D + L PQ P+VR
Sbjct: 717 SMILGICASIIPYPNHNQSPRNTYQSAMGKQAMGIYASNFNMRMDTTAHVLFYPQKPLVR 776
Query: 695 TNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSD 754
T + ++ P G NAIVA+ Y+GY+ ED++I+++S+V+RG +++
Sbjct: 777 TKAMSYMRSNDLPAGHNAIVAIACYSGYNQEDSIIMSRSAVERGFFRSVFWRS----YKA 832
Query: 755 DGNKVDRGQKLFRRNKDAKSLH------SVIDSDGL-----PYVGQMIHPGEPYCSIYDK 803
K G+++F D K H + +D+DGL P +G I G+
Sbjct: 833 SEEKKREGREMF-EIPDRKVCHVKRADYTKLDTDGLIKPGMPVIGGDIIVGKTIPVPKTL 891
Query: 804 TTNSWRTNSR----------KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDK 853
+ S +++R + +E VD V + +N N K +R R + P IGDK
Sbjct: 892 SEGSPVSDTRILKRDCSISSRAAEKGVVDRVML-TENKGNRFTK--VRIRTIKIPNIGDK 948
Query: 854 FSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
F SRHGQKG + DMPF+ G+ PDLIINPHA PSRMT+A L+E++A K
Sbjct: 949 FCSRHGQKGTNGIQFRQEDMPFNH-DGISPDLIINPHAIPSRMTVAHLIETLAGK 1002
>gi|72388214|ref|XP_844531.1| DNA-directed RNA polymerase II subunit 2 [Trypanosoma brucei TREU927]
gi|62359772|gb|AAX80202.1| DNA-directed RNA polymerase II subunit 2, putative [Trypanosoma
brucei]
gi|70801064|gb|AAZ10972.1| DNA-directed RNA polymerase II subunit 2, putative [Trypanosoma
brucei brucei strain 927/4 GUTat10.1]
Length = 1190
Score = 226 bits (575), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 237/895 (26%), Positives = 389/895 (43%), Gaps = 111/895 (12%)
Query: 67 ERFNFGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNY 126
+ G+ P+MLK+ RC+L D ++L L E + GGYFI+NG E+V ++ ++
Sbjct: 167 QNMELGRIPIMLKSMRCNLLNKDEEELPRLNECPHDQGGYFIVNGTEKV----LIAQERQ 222
Query: 127 PMSMVRSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLL---NGSVRLGFWLQGKEYL 183
+ V + R + K++V + K ++ L Y +G L + + L
Sbjct: 223 AANHVYAFTRPKGLLCEIKSIVEGSLNKPRTLQILMPYKKSGPGHGYENLLCRVAQMDEL 282
Query: 184 LPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTT 243
+P+ ++ +AL +D EI T D K + E ++ + + L + T
Sbjct: 283 IPLFVLFRALDMGSDKEILQ--TVVPDLK---------DVAMLEMLRGSMEDASTLEIFT 331
Query: 244 RLQCLQHIGEHF--QPVIDGLQSESYYAVAETVIRD---YIFVHLNDNNDKFNLLIFMLQ 298
R + L IG+ Q + LQ E+ + ++RD ++ V + K + +M+
Sbjct: 332 RDEALWFIGKRLGKQDSRENLQREA----QDLLMRDLLPHMGVDCAADRGKCLFIGYMVH 387
Query: 299 KLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKF 358
+L L + D L ++ I + G L+T L + L R+ + + D N G
Sbjct: 388 RLLLLALGRREDTDRDFLGHKRIDVAGSLLTFQLNQFLVQVRREMAQTVHDYSTNRGGVV 447
Query: 359 DFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFI 418
F + + +++ + + T LK+G + T G + RL + +
Sbjct: 448 SFGRILH-NRLITDGMRRCLATGNFGDLKSGNIKT----------GVSQTLNRLTYSSSL 496
Query: 419 SFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDS 478
S R + S A + T R L WG++CPV TP+G GLL ++ C V+ D
Sbjct: 497 SNLRRIQNPIS-ASSKATRPRNLHCTQWGYICPVETPEGGSIGLLKNLALMCLVSRGSDH 555
Query: 479 RGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGV---------- 528
G ++ T + L V V ++G ++GV
Sbjct: 556 TGVVQAVQSRITGFHSI-----------ALSDLADVRVARVFVNGTLIGVHGDPERLLRD 604
Query: 529 ----IPSSEIEKVVAHLRRLKVSAASVIPDD---------LEVGYVPLSLGGAYPGLYLF 575
E+ V+ +R ++ V D +E + L G +
Sbjct: 605 LRARRRGGELSNEVSIVRDIRDREIRVFSDGGRCLRPLFVVEKSRIKLQKAG----IGEL 660
Query: 576 TSPPKFVRPVRNISLPSEESQN-IELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIHP 634
P + R IS + +ELI E+ + I G +N F +H E+ P
Sbjct: 661 LEPSTTLGGRREISWNKVMKKGYVELIDCEEEDSLLIAMVPSEVG--KNYF-YSHCEMDP 717
Query: 635 TGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVR 694
+ +L + A++ PY +HNQSPRN YQ M KQ MG R D + L PQ P+VR
Sbjct: 718 SMILGICASIIPYPNHNQSPRNTYQSAMGKQAMGIYASNFNMRMDTTAHVLFYPQKPLVR 777
Query: 695 TNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSD 754
T + ++ P G NAIVA+ Y+GY+ ED++I+++S+V+RG +++
Sbjct: 778 TKAMSYMRSNDLPAGHNAIVAIACYSGYNQEDSIIMSRSAVERGFFRSVFWRS----YKA 833
Query: 755 DGNKVDRGQKLFRRNKDAKSLH------SVIDSDGL-----PYVGQMIHPGEPYCSIYDK 803
K G+++F D K H + +D+DGL P +G I G+
Sbjct: 834 SEEKKREGREMF-EIPDRKVCHVKRADYTKLDTDGLIKPGMPVIGGDIIVGKTIPVPKTL 892
Query: 804 TTNSWRTNSR----------KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDK 853
+ S +++R + +E VD V + +N N K +R R + P IGDK
Sbjct: 893 SEESPVSDTRILKRDCSISSRAAEKGVVDRVML-TENKGNRFTK--VRIRTIKIPNIGDK 949
Query: 854 FSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
F SRHGQKG + DMPF+ G+ PDLIINPHA PSRMT+A L+E++A K
Sbjct: 950 FCSRHGQKGTNGIQFRQEDMPFNH-DGISPDLIINPHAIPSRMTVAHLIETLAGK 1003
>gi|18312085|ref|NP_558752.1| DNA-directed RNA polymerase subunit B [Pyrobaculum aerophilum str.
IM2]
gi|18159514|gb|AAL62934.1| DNA-directed RNA polymerase subunit B (rpoB) [Pyrobaculum
aerophilum str. IM2]
Length = 1127
Score = 225 bits (573), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 195/632 (30%), Positives = 297/632 (46%), Gaps = 81/632 (12%)
Query: 311 DNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVM 370
D+ D + N+ + L G L+T + L+ +L++ K ++ ++ I
Sbjct: 354 DDKDHVGNKRVRLVGDLMTQLFRTVLKQFLQELKSQLEK----------YYARGRI---- 399
Query: 371 EKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASF 430
P Q + + + R A TG + + G + +R N+L +S+ R V S
Sbjct: 400 ---PHIQTIVRPDIITERVRQALATGNWVGGKTGVSQILDRTNYLSTLSYLRRVVSSLS- 455
Query: 431 AGLRTT---SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSK 487
RT R L P WG LC V TP+G+ GL+ ++ + + D
Sbjct: 456 ---RTQPHFEARDLHPTQWGRLCAVETPEGQNVGLVKNLALLAEITTGVDE--------- 503
Query: 488 MRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPS-SEIEKVVAHLRRLKV 546
+ +L +G+IP L K + G V L+GR++GV P+ E+ K V LRR
Sbjct: 504 --GEVEHMLYNMGVIPIL-KAREEGVSGA-EVYLNGRLIGVHPNPEELAKTVRGLRR--- 556
Query: 547 SAASVIPDDLEV----GYVPLSLGGAY---PGLYLFTSPPKFVRP-VRNISLPSEESQNI 598
I D++ + G V ++ G P L + K R V + ++
Sbjct: 557 --QGKISDEINIAVINGTVYVNCDGGRIRRPLLVVENGKLKLTREIVEKVKRGDLTWDDL 614
Query: 599 ELIGPFEQVFM-EIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNM 657
+G E + E R N TH EI P+ +L +A++ PY +HNQSPRN
Sbjct: 615 VKMGVVEYLDADEEENAHIATDPRGNLTNYTHVEIIPSSILGAIASIIPYIEHNQSPRNQ 674
Query: 658 YQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVL 717
Y+ MAKQ++G ++ D + + L P+ PIV T G + P G NA+VA+L
Sbjct: 675 YEAAMAKQSLGLPQSNFLYKLDSRGHMLYYPERPIVTTRGLELIGYSKRPAGQNAVVALL 734
Query: 718 AYTGYDMEDAMILNKSSVDRGMCHGQIYQT-ETIDLSDDGNKVDRGQ------KLFRRNK 770
YTGY++EDA+ILNK+SV+RGM Y+T ET + G + DR + K +R
Sbjct: 735 TYTGYNIEDAVILNKASVERGMFRSVFYRTYETEEQKYPGGEEDRIEIPDSSVKGYR--- 791
Query: 771 DAKSLHSVIDSDGLP----YVGQ---MIHPGEP---YCSIYDKTTNSWRTNS----RKGS 816
+S +D DG+ YV +I P Y ++ + R ++ R+G
Sbjct: 792 -GPEAYSHLDEDGIAPPEVYVSSNEVLIGKTSPPRFYTTLEAERILKERRDASVAVRRGE 850
Query: 817 ESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFS 876
+ + VD V + N + +R R R P +GDKF+SRHGQKGV L DMPF+
Sbjct: 851 KGI-VDKVIITESPEGN--KLVKVRLRELRVPELGDKFASRHGQKGVVGMLLRQEDMPFT 907
Query: 877 GVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
G+ PD+I+NPHA PSRMT+A LLES+A K
Sbjct: 908 E-DGIVPDIIVNPHALPSRMTVAQLLESIAGK 938
Score = 49.3 bits (116), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 57 YLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVF 116
Y+D P E F G+ P+M+K++RC+L + E+ + GGYFI+NG ERV
Sbjct: 117 YVD-DEPYATETFYIGELPIMVKSKRCNLTRLRPSEYAKRFEDPQDFGGYFIINGSERVI 175
Query: 117 RS 118
S
Sbjct: 176 IS 177
>gi|392571043|gb|EIW64215.1| DNA-dependent RNA polymerase II second largest subunit [Trametes
versicolor FP-101664 SS1]
Length = 1231
Score = 224 bits (570), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 239/961 (24%), Positives = 405/961 (42%), Gaps = 158/961 (16%)
Query: 39 RQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKE 98
R+ S TG ++ + E +P + G+ P+ML++ C L G + +L L E
Sbjct: 146 REDPDSATGDMVWETEHD----DNPEDTRKVWIGKVPIMLRSTFCILHGLEDDELYDLNE 201
Query: 99 EAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSS 158
+ GGYFI+NG E+V ++ ++ + V + + + A + V K +
Sbjct: 202 CPYDSGGYFIINGSEKV----LIAQERMATNHVYVFAKAQPSPISFLAEIRSAVEKGGKT 257
Query: 159 VT---LKLYYLLNGSVRLGFWLQGK-EYL---LPVGIVLKALVDTNDLEIFNHLTCCYDE 211
++ +KLY+ + LG ++ Y+ +P+ +V +AL +D +I H+ CYD
Sbjct: 258 ISQFQVKLYHR-SQERSLGNVMKATIPYIKVDIPIWVVFRALGVISDRDILEHI--CYDM 314
Query: 212 KYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVA 271
+ + + P + E I E+ L +IG + GL E A
Sbjct: 315 Q-DNQMLEMLKPCIDEGFVIQDREI----------ALDYIGN--RGTTTGLNRERRLRYA 361
Query: 272 ETVIRDYIFVHLN----DNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHL 327
+ +++ + H++ + K +M+ +L D+ D + + L G L
Sbjct: 362 QEILQKEMLPHVSMAEGSESKKAYFFGYMIHRLLLAALERRDLDDRDHFGKKRLDLAGPL 421
Query: 328 ITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLK 387
+ + + + +Q +E + + F L K I ++ L
Sbjct: 422 LANLFRMLFRKLTKDVYRYLQKCVETHKE----FQLGLAVK------HNTITNGLKYSLA 471
Query: 388 TGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWG 447
TG Q + +AG + R + +S R + G + R+L WG
Sbjct: 472 TGNWGDQKKT-MSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREG-KIAKPRQLHNTHWG 529
Query: 448 FLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPK 507
+CP TP+G+ CGL+ +++ ++ + ++ L G+ SL +
Sbjct: 530 MVCPAETPEGQACGLVKNLSLMSCIS-----------VGSLSAPVIEFLEEWGL-ESLEE 577
Query: 508 LVKSGPPAVLSVLLDGRVVGV--IPSSEIEKVVAHLRRLKVSA-ASVIPDDLEVGYVPLS 564
S P V ++G +GV P++ ++ + R+ +SA SV+ D E
Sbjct: 578 NAHSSTPCT-KVFVNGVWMGVHRDPANLVKTIKKLRRKDDISAEVSVVRDIRE------- 629
Query: 565 LGGAYPGLYLFTSPPKFVRP---------------VRNISLPSEESQN------------ 597
L L+T + RP + N++ EE +
Sbjct: 630 -----RELRLYTDAGRVCRPLFIVENQQLLLQKKHIENLARGKEEPEKDATKFEYKWDNL 684
Query: 598 -----IELI-GPFEQVFMEIRCPDGGDGGR------------------------RNAFPA 627
IEL+ E+ M P+ + R NA
Sbjct: 685 IKDGVIELLDAEEEETVMICMTPEDLENSRLQSAGIDPHENDGELDPSARLKAPTNAHTW 744
Query: 628 THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
TH EIHP+ +L V A++ P+ DHNQSPRN YQ M KQ MG + R D L
Sbjct: 745 THCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYY 804
Query: 688 PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
PQ P+ T + E P G NA+VA+L Y+GY+ ED++I+N+SS+DRG+ Y++
Sbjct: 805 PQKPLATTRSMEYLKFRELPAGQNAVVAILCYSGYNQEDSVIMNQSSIDRGLFRSMYYRS 864
Query: 748 ETIDLSDDGNKVDRGQKLFRRNKDAK-----SLHSVIDSDGLPYVGQ-------MIHPGE 795
+DL + + + + ++ + +D+ + ++ DGL G +I
Sbjct: 865 -YMDL-EKKSGIQQLEEFEKPTRDSTLRMKHGTYDKLEDDGLIAPGTNVNGEDIIIGKTA 922
Query: 796 PYCSIYDKTTNSWRTNSR-------KGSESVFVDYVAVDMKNSKNLPQK-ANIRFRHTRN 847
P ++ RT+++ K +E +D V + N++ QK IR R TR
Sbjct: 923 PIPPDSEELGQRTRTHTKRDVSTPLKSTEQGIIDQVLI-TTNAEG--QKFVKIRVRSTRI 979
Query: 848 PIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAA 907
P IGDKF+SRHGQKG + DMPF+ G+ PD+IINPHA PSRMTI L+E + +
Sbjct: 980 PQIGDKFASRHGQKGTIGITYRQEDMPFTA-EGITPDIIINPHAIPSRMTIGHLVECLLS 1038
Query: 908 K 908
K
Sbjct: 1039 K 1039
>gi|340053396|emb|CCC47686.1| putative DNA-directed RNA polymerase II subunit 2 [Trypanosoma
vivax Y486]
Length = 1186
Score = 223 bits (569), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 240/891 (26%), Positives = 387/891 (43%), Gaps = 103/891 (11%)
Query: 67 ERFNFGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNY 126
+ G+ P+MLK+ RC+L D +L L E + GGYFI+NG E+V + N+
Sbjct: 163 QNMELGRIPIMLKSIRCNLLYKDEDELPRLNECPHDQGGYFIINGTEKVLVAQERQAANH 222
Query: 127 PMSMVR-----SSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKE 181
+ R + EG +K R Q + K +G L + +
Sbjct: 223 VYAFTRPKGLLCEIKSIVEGSLNKP------RTFQIIMPYKKTGPGHGYENLLCRVAQMD 276
Query: 182 YLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSL 241
L+P+ ++ +AL +D EI T D K + E ++ + + L +
Sbjct: 277 ELIPLFVLFRALDMGSDREILQ--TVVPDLK---------DAAMLEMLRGSMEDASTLQI 325
Query: 242 TTRLQCLQHIGEHF--QPVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQK 299
TR + L IG+ Q + LQ E+ + ++ ++ V + K + +M+ +
Sbjct: 326 FTRDEALWFIGKRLGRQDSRENLQREAQGLLMRDLL-PHMGVDCTADRGKCLFIGYMVHR 384
Query: 300 LFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFD 359
L L + D L ++ I + G L+T L L ++ K + D + G
Sbjct: 385 LLLLALGRREDTDRDFLGHKRIDVAGALLTFQLNHFLVQVRKEMSKTVHDYSTSRGGVVS 444
Query: 360 FFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFIS 419
F + + S+ I + L TG ++ + G + RL + +S
Sbjct: 445 FAKILH---------SRLITDGMRRCLATGNFGDLKSGNI--KTGVSQTLNRLTYSSSLS 493
Query: 420 FFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSR 479
R + S A + T R L WG++CPV TP+G GLL ++ C + SR
Sbjct: 494 NLRRIQNPIS-ASSKATRPRNLHCTQWGYICPVETPEGGSIGLLKNLALMCLI-----SR 547
Query: 480 GNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGV----------- 528
G+ D + + ++ + G + L + V ++G ++GV
Sbjct: 548 GS--DHTSVAQTVQARITGFHSV----GLSDLADVRLARVFVNGTLIGVHRDPERLLREL 601
Query: 529 ---IPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPL------SLGGAYPGLYLFTSPP 579
E+ V+ +R ++ V D PL SL G+ P
Sbjct: 602 RARRRGGELSNEVSIVRDIRDREIRVFSDAGRC-IRPLFVVEKSSLKLRKAGMGELLEPS 660
Query: 580 KFVRPVRNISLPSEESQN-IELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIHPTGML 638
+ R IS + +ELI E+ + I G +N F +H E+ P+ +L
Sbjct: 661 RAPGGQRQISWNRVMKRGYVELIDCEEEDSLLIAMAPSEVG--KNYF-YSHCEMDPSMIL 717
Query: 639 SVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTY 698
+ A++ PY +HNQSPRN YQ M KQ MG R D + L PQ P+VRT
Sbjct: 718 GICASIIPYPNHNQSPRNTYQSAMGKQAMGIYASNFNMRMDTTAHILFYPQKPLVRTKAM 777
Query: 699 TKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNK 758
+ ++ P G NA+VA+ Y+GY+ ED++I+++S+V+RG ++ + S++ K
Sbjct: 778 SYMRSNDLPAGHNAVVAIACYSGYNQEDSIIMSRSAVERGFFRSVFWR--SYKASEENKK 835
Query: 759 VDRGQKLFRRNKDAKSLH------SVIDSDGL-----PYVGQMIHPGE----PYCSIYDK 803
G+++F D K H S +D+DGL P +G I G+ P +
Sbjct: 836 --EGKEVF-EVPDRKICHVKRADYSKLDTDGLIKPGMPVMGGDILVGKTVPIPESMRENA 892
Query: 804 TTNSWRTNSR------KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSR 857
TT + R R + +E VD V + +N N K ++ R + P IGDKF SR
Sbjct: 893 TTANTRIMKRDCSISSRTAEKGVVDKVML-TENKGNRFTK--VKVRTIKIPNIGDKFCSR 949
Query: 858 HGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
HGQKG + DMPF+ G+ PDLIINPHA PSRMT+A L+E++A K
Sbjct: 950 HGQKGTNGIQFRQEDMPFNS-DGISPDLIINPHAIPSRMTVAHLIETLAGK 999
>gi|120561271|gb|ABM27020.1| RNA polymerase II second largest subunit, partial [Chytriomyces
hyalinus]
Length = 883
Score = 223 bits (568), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 209/786 (26%), Positives = 341/786 (43%), Gaps = 100/786 (12%)
Query: 184 LPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTT 243
+P+ +V +AL +D EI + CYD +P++ E +K + E + T
Sbjct: 73 VPIVVVFRALGIISDKEIMEKI--CYDFD--------DTPML-ELLKPCIEEA--FPIQT 119
Query: 244 RLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHL----NDNNDKFNLLIFMLQK 299
R L +IG Q V G E A +++ + H+ + K +M+ +
Sbjct: 120 REVALDYIGRRGQSV--GATKEKRIKYAMDILQKEMLPHVGTKAHQETRKAYFFGYMIHR 177
Query: 300 LFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFD 359
L D+ D + + L G L+T + + + +Q +E+N
Sbjct: 178 LLLATMQRRDFDDRDHFGKKRLDLAGPLMTQLFRILFRKLTKDITRQLQKHVESNKA--- 234
Query: 360 FFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFIS 419
FN+ ++++ ++ N K ++ L TG Q+ Q RAG + R F +S
Sbjct: 235 -FNIQSLERSLDANVLK---NGLKYSLATGNWGDQSKAS-QARAGVSQVLNRYTFASTLS 289
Query: 420 FFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSR 479
R ++ G + R+L WG +CP TP+G+ CGL+ +M+ + S
Sbjct: 290 HLRRLNSPTDRDG-KLAKPRQLHNTQWGMVCPAETPEGQACGLVKNMSLMAIITVGTSSG 348
Query: 480 GNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGV--IPSSEIEKV 537
I ++ + L VG P ++K V L+G +GV P + +E +
Sbjct: 349 PFIEHLEELS---METLEEVG-----PSVLKDA----TKVFLNGMWLGVHREPENLVENL 396
Query: 538 VAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFT----SPPKFVRPVRNISL--P 591
+ R +VS I D+ + L LF S ++ ++L P
Sbjct: 397 RSTRRNCEVSPEVSIVHDVTECELRLYTDAGRISRPLFIVDKESQKLLIQRAHVLALRDP 456
Query: 592 SEESQNIELIGPF---------EQVFMEIRCPDGGDGGRRNA------------------ 624
++ ++L+ E+ M PD + R+ A
Sbjct: 457 ETDATFVDLLSEGVVEYIDTEEEETAMIAMSPDDLESARKAARGIPEIKKERNRTERSQT 516
Query: 625 -----FPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRAD 679
TH EIHP+ +L + A++ P+ DHNQSPRN YQ M KQ MG + + ++R D
Sbjct: 517 VSALTLNWTHCEIHPSMILGICASIIPFPDHNQSPRNCYQSAMGKQAMGIFLTSFQYRMD 576
Query: 680 QKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGM 739
Q + L PQ P+ T + E P G NAIV + Y+GY+ ED++I+N+SS+D+G+
Sbjct: 577 QTMNILFYPQKPLACTRSMEYLRFRELPAGQNAIVCICCYSGYNQEDSLIMNQSSIDKGL 636
Query: 740 CHGQIYQTETIDLSDDG-NKVDRGQKLFRRN--KDAKSLHSVIDSDGL--PYV---GQMI 791
++ +G +++ +K R N + + + +D DGL P V G I
Sbjct: 637 FRSLYFKVYIDTEKKEGMTQLETIEKPMRENTLRMRQGSYDKLDVDGLVSPGVRVSGDDI 696
Query: 792 HPGEPYCSIYDKTTNSWRTNSR---------KGSESVFVDYVAVDMKNSKNLPQKANIRF 842
G+ D RT+ K +E+ +D V V + + + +R
Sbjct: 697 LIGKTVPLPKDSEEMGQRTSGHTKRDDSTPLKSTEAGIIDQVMV--TTNADGYKFVKVRM 754
Query: 843 RHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLL 902
R R P IGDKF+SRHGQKG C + + DMPF+ G+ PD+IINPHA PSRMTI L+
Sbjct: 755 RSIRVPQIGDKFASRHGQKGTCGITYRNEDMPFTR-DGITPDIIINPHAIPSRMTIGHLV 813
Query: 903 ESVAAK 908
E + K
Sbjct: 814 ECLLGK 819
>gi|120561269|gb|ABM27019.1| RNA polymerase II second largest subunit, partial [Chytriomyces
hyalinus]
Length = 883
Score = 223 bits (568), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 209/786 (26%), Positives = 341/786 (43%), Gaps = 100/786 (12%)
Query: 184 LPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTT 243
+P+ +V +AL +D EI + CYD +P++ E +K + E + T
Sbjct: 73 VPIVVVFRALGIISDKEIMEKI--CYDFD--------DTPML-ELLKPCIEEA--FPIQT 119
Query: 244 RLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHL----NDNNDKFNLLIFMLQK 299
R L +IG Q V G E A +++ + H+ + K +M+ +
Sbjct: 120 REVALDYIGRRGQSV--GATKEKRIKYAMDILQKEMLPHVGTKAHQETRKAYFFGYMIHR 177
Query: 300 LFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFD 359
L D+ D + + L G L+T + + + +Q +E+N
Sbjct: 178 LLLATMQRRDFDDRDHFGKKRLDLAGPLMTQLFRILFRKLTKDITRQLQKHVESNKA--- 234
Query: 360 FFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFIS 419
FN+ ++++ ++ N K ++ L TG Q+ Q RAG + R F +S
Sbjct: 235 -FNIQSLERSLDANVLK---NGLKYSLATGNWGDQSKAS-QARAGVSQVLNRYTFASTLS 289
Query: 420 FFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSR 479
R ++ G + R+L WG +CP TP+G+ CGL+ +M+ + S
Sbjct: 290 HLRRLNSPTDRDG-KLAKPRQLHNTQWGMVCPAETPEGQACGLVKNMSLMAIITVGTSSG 348
Query: 480 GNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGV--IPSSEIEKV 537
I ++ + L VG P ++K V L+G +GV P + +E +
Sbjct: 349 PFIEHLEELS---METLEEVG-----PSVLKDA----TKVFLNGMWLGVHREPENLVENL 396
Query: 538 VAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFT----SPPKFVRPVRNISL--P 591
+ R +VS I D+ + L LF S ++ ++L P
Sbjct: 397 RSTRRNCEVSPEVSIVHDVTECELRLYTDAGRISRPLFIVDKESQKLLIQRAHVLALRDP 456
Query: 592 SEESQNIELIGPF---------EQVFMEIRCPDGGDGGRRNA------------------ 624
++ ++L+ E+ M PD + R+ A
Sbjct: 457 ETDATFVDLLSEGVVEYIDTEEEETAMIAMSPDDLESARKAARGIPEIKKERNRTERSQT 516
Query: 625 -----FPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRAD 679
TH EIHP+ +L + A++ P+ DHNQSPRN YQ M KQ MG + + ++R D
Sbjct: 517 ISALTLNWTHCEIHPSMILGICASIIPFPDHNQSPRNCYQSAMGKQAMGIFLTSFQYRMD 576
Query: 680 QKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGM 739
Q + L PQ P+ T + E P G NAIV + Y+GY+ ED++I+N+SS+D+G+
Sbjct: 577 QTMNILFYPQKPLACTRSMEYLRFRELPAGQNAIVCICCYSGYNQEDSLIMNQSSIDKGL 636
Query: 740 CHGQIYQTETIDLSDDG-NKVDRGQKLFRRN--KDAKSLHSVIDSDGL--PYV---GQMI 791
++ +G +++ +K R N + + + +D DGL P V G I
Sbjct: 637 FRSLYFKVYIDTEKKEGMTQLETIEKPMRENTLRMRQGSYDKLDVDGLVSPGVRVSGDDI 696
Query: 792 HPGEPYCSIYDKTTNSWRTNSR---------KGSESVFVDYVAVDMKNSKNLPQKANIRF 842
G+ D RT+ K +E+ +D V V + + + +R
Sbjct: 697 LIGKTVPLPKDSEEMGQRTSGHTKRDDSTPLKSTEAGIIDQVMV--TTNADGYKFVKVRM 754
Query: 843 RHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLL 902
R R P IGDKF+SRHGQKG C + + DMPF+ G+ PD+IINPHA PSRMTI L+
Sbjct: 755 RSIRVPQIGDKFASRHGQKGTCGITYRNEDMPFTR-DGITPDIIINPHAIPSRMTIGHLV 813
Query: 903 ESVAAK 908
E + K
Sbjct: 814 ECLLGK 819
>gi|358337637|dbj|GAA55991.1| DNA-directed RNA polymerase II subunit RPB2 [Clonorchis sinensis]
Length = 1921
Score = 223 bits (567), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 233/923 (25%), Positives = 375/923 (40%), Gaps = 121/923 (13%)
Query: 39 RQAKISYTGKLMADVEFQYL--DAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
R ++Y L DV + + D E+ G+ P+ML++ C L + L L
Sbjct: 876 RLRNLTYAAPLYVDVMKKIIRDDGEEEKPLEKKFIGKIPIMLRSTYCLLSIMSDRDLAEL 935
Query: 97 KEEAAEMGGYFILNGLERVF-------RSVILPKQNYPMSMVRSSFRDRREGYTDKAVVI 149
E + GGYFI+NG E+V + +L + P S + + R K I
Sbjct: 936 NECPLDPGGYFIINGSEKVLIAQEKMATNTVLEHSSRPASTLWINMMARGGKDGSKRATI 995
Query: 150 RCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY 209
Q V + Y + +PV IV +AL D +I H+ +
Sbjct: 996 -----GQRIVAILPYI---------------KQEIPVLIVFRALGFVADRDILEHIIYDF 1035
Query: 210 DEKYKKE--KGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESY 267
D+ +E K ++ V + K+ L IG + G+ E
Sbjct: 1036 DDTEMREMIKPSLDDAFVIQEQKV---------------ALNFIGS--RGARPGVTKEKR 1078
Query: 268 YAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILL 323
A+ +++ H+ ++ K L +M+ +L D+ D N+ + L
Sbjct: 1079 IKYAKEILQKETLPHVGVSDFCETRKAYFLGYMVHRLLLAALKRRDVDDRDHYGNKRLDL 1138
Query: 324 PGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIE 383
G L+ + + L K +L + + GK F N++ + S+ I ++
Sbjct: 1139 AGPLLAFLFRGLFRN-LTKEIRLYAQKFIDKGKDF------NLELAIR---SQIITDGLK 1188
Query: 384 TMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLP 443
L TG Q + Q R G + RL F +S R ++ G + R+L
Sbjct: 1189 YSLATGNWGDQKKAN-QARPGVSQVLNRLTFASTLSHLRRLNSPIGRDG-KLARPRQLHN 1246
Query: 444 ESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIP 503
WG +CP TP+G GL+ ++ ++ + IL L M
Sbjct: 1247 TLWGMICPAETPEGSAVGLVKNLALMAYIS-----------VGSQPSPILEFLEEWSM-E 1294
Query: 504 SLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAASVIPDDLE 557
+L ++ S + ++G VG+ S + ++ LR+L+ VS S++ D +
Sbjct: 1295 NLEEIAPSAIGKTCKIFVNGCWVGIHNSPD--HLMVTLRKLRRQVDVIVSEVSMVRDYRD 1352
Query: 558 VGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN------------IELIGPFE 605
+ G + K + +I +++ N +E I E
Sbjct: 1353 QEIRIYTDAGRICRPLVIVEKGKLLLKRSHIEFLKDKAYNRYSWQDLVLSGVVEYIDTLE 1412
Query: 606 Q-VFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAK 664
+ M P TH EIHP+ +L + A++ P+ DHNQSPRN YQ M K
Sbjct: 1413 EETVMIAMGPAEMQAAVHYCKTHTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGK 1472
Query: 665 QTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDM 724
Q MG + R D L PQ P+V T + E P G NAIVA+ YTGY+
Sbjct: 1473 QAMGVYISNFHTRMDTLANVLYYPQKPLVATRSMEYLRFRELPAGINAIVAIATYTGYNQ 1532
Query: 725 EDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDA-----KSLHSVI 779
ED++ILN+S++ RG + Y+T + G +D+ + + N +++ +
Sbjct: 1533 EDSVILNESAIQRGFFRSEFYRTYKDQEARHG--MDQEEVFEKPNPQQCQGMRHAIYDKL 1590
Query: 780 DSDGLPYVGQMIHPGEPYCSIY-------DKTTNSWRTNSRKG-------SESVFVDYVA 825
D DGL G + + D+ R +++ SE VD V
Sbjct: 1591 DDDGLIAPGTRVSGDDVLIGKTITLPENEDEMEGGQRRYTKRDASVFMRRSEYGIVDQVM 1650
Query: 826 VDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDL 885
+ N N + +R R T+ P +GDKF+SRHGQKG C + DMPF+ G+ PD+
Sbjct: 1651 ITWNNEGN--KFCKVRVRTTKTPQVGDKFASRHGQKGTCGIRYRQEDMPFT-CEGITPDI 1707
Query: 886 IINPHAFPSRMTIAMLLESVAAK 908
IINPHA PSRMTI L+E + K
Sbjct: 1708 IINPHAIPSRMTIGHLIECLQGK 1730
>gi|307103930|gb|EFN52187.1| hypothetical protein CHLNCDRAFT_59036 [Chlorella variabilis]
Length = 1175
Score = 223 bits (567), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 217/884 (24%), Positives = 370/884 (41%), Gaps = 91/884 (10%)
Query: 71 FGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSM 130
G P+ML++ C+L G + L L E + GGYF++NG E+V + N+ + +
Sbjct: 152 LGDVPIMLRSDYCNLSGRSERDLCDLGECPYDQGGYFVINGSEKVLIAQERMANNH-VYV 210
Query: 131 VRSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGK-EYL---LPV 186
R S + + V+ + S++ +K+ G G ++ Y+ +P+
Sbjct: 211 FRKSQPSKYAYVAECRSVVEGSTRTVSTMQVKMLSRA-GQKGAGQCIRASIPYVRADIPI 269
Query: 187 GIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQ 246
I+ +AL D +I H+ + + E P + E I EV
Sbjct: 270 LIIFRALGFVADKDILEHIVYDFGDTTMME---ALRPSIEEAFPIQSQEV---------- 316
Query: 247 CLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLN----DNNDKFNLLIFMLQKLFS 302
L +IG+ + G + A +++ + H+ K +++ +L
Sbjct: 317 ALDYIGKRGSTI--GATRNARIQYARELLQKELLPHVGMEEFCETKKAYFFGYVIHRLLL 374
Query: 303 LVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFN 362
+ D+ D N+ + L G L+ ++ + + +Q + + GK+ + +
Sbjct: 375 VALGRREEDDRDHYGNKRLDLGGPLLANLFRQLFRKLSKDVRGYVQKCV-DKGKEINLTS 433
Query: 363 LANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFR 422
N K + + + T ++ G + R G + RL + +S R
Sbjct: 434 AIN-KDTITRGLRYSLATGNWGVVGAGEV----------RPGVSQVLNRLTYASTLSHLR 482
Query: 423 AVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNI 482
++ G + R+L WG +CP TP+G+ CGL+ ++ + S + +
Sbjct: 483 RINSPIGREG-KIAKPRQLHNSQWGMICPAETPEGQACGLVKNLALMTYI-SVGCASNPV 540
Query: 483 RDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGV--IPSSEIEKVVAH 540
DF + + L ++ S P + ++G VG+ P + +E + A
Sbjct: 541 LDFLQEWAT-----------EDLEEISPSVIPKATKIFVNGVWVGIHRDPQTLVETLRAM 589
Query: 541 LRRLKVSAASVIPDDLEVGYVPL--SLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNI 598
R++ +S + D+ + + L G L++ V+ I+L + E
Sbjct: 590 RRQVDISTEVGVVHDIRLQELRLYTDYGRCCRPLFIVEDQAVKVKKRDIINLQNREETGF 649
Query: 599 ELIGPFEQVFME------------------IRCPDGGDGGRRNAFPA--THEEIHPTGML 638
E ++E +R + + A TH EIHP +L
Sbjct: 650 TWQSMIEAGYIEYVDVEEEETTMIAMFINDLRLARIAEDAATASSIALYTHCEIHPAMIL 709
Query: 639 SVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTY 698
V A++ P+ DHNQSPRN YQ M KQ MG V + R D + Y L PQ P+V T
Sbjct: 710 GVCASIVPFPDHNQSPRNTYQSAMGKQAMGMYVTNYQVRMDTQGYVLFYPQKPLVTTRNM 769
Query: 699 TKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNK 758
E P G N IVA+ Y+GY+ ED+ ++N+SS+DRG+ +++ + G+
Sbjct: 770 EYLHFRELPAGINTIVAIACYSGYNQEDSTMMNQSSIDRGIFRSIFFRSYKTEEKKQGSL 829
Query: 759 VDRGQKLFRRNKDAKSLHSV---IDSDGLPYVGQMIHPGE----PYCSIYDKTTNSWRTN 811
V + R A + H +D DG+ G + + I D + +
Sbjct: 830 VQESIERPNREITAGTRHGTYDKLDDDGIAPPGTRVSGDDIVIGKTSPIPDDGSGLPQRY 889
Query: 812 SRKG-------SESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVC 864
S+K SES +D V V + + +R R R P +GDKF+SRHGQKG
Sbjct: 890 SKKDASTALRHSESGMIDSVLV--TTGADGQRFVKMRVRSVRIPQVGDKFASRHGQKGTI 947
Query: 865 SQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
+ DMPFS G+ PDLIINPHA PSRMTI L+E++ +K
Sbjct: 948 GITYTQEDMPFSA-EGISPDLIINPHAIPSRMTIGHLVEALMSK 990
>gi|339898015|ref|XP_003392438.1| putative DNA-directed RNA polymerase polypeptide [Leishmania
infantum JPCM5]
gi|321399356|emb|CBZ08599.1| putative DNA-directed RNA polymerase polypeptide [Leishmania
infantum JPCM5]
Length = 1132
Score = 223 bits (567), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 231/945 (24%), Positives = 392/945 (41%), Gaps = 166/945 (17%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRER-FNFGQFPVMLKTRRCHLQGADSQKLVSL 96
CR ++Y G ++ DV++ D ++ E+ G P+MLK++ C+L ++LV++
Sbjct: 98 CRVRDMTYRGDMIVDVQYTSRDRSRAMLVEKDVKIGTIPIMLKSKCCNLYRKTREELVNM 157
Query: 97 KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQ 156
+E + GGYFI+ G+E+V ++ +Q+ ++ + + K
Sbjct: 158 RECPLDPGGYFIIKGVEKV--CLVQEQQSKNRVIIEADEHGNISAHVQS--------KTH 207
Query: 157 SSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKE 216
S++ GS+ L ++ +P+ +VLKAL ND H+T C
Sbjct: 208 YSISKCAVTFKKGSIVLTHRSFTED--IPIIVVLKALGLEND----QHITQCIGT----- 256
Query: 217 KGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAV------ 270
SP E + E + L++ T+ LQ+IGE + + + V
Sbjct: 257 -----SPEFQEILFPCFEEARLLNVVTQNDALQYIGEKRKETVWEAEETQQRQVNRSKAD 311
Query: 271 -AETVIRDYIFVHLNDNN--------DKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEI 321
A + + + H+ + K + FM++ + S+ D D N+
Sbjct: 312 KAAEFLANVLLCHIREAQVQKDWNFRHKAFYVCFMVRGMIEASFDASLLDERDFYGNKRF 371
Query: 322 LLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTS 381
G L+ + ED L++ ++++ ++ K D N+K++ME +
Sbjct: 372 ETTGTLMALLF----EDLLKQFNRVVKTAMDQQLSKKDSTRPFNVKQLME--------SK 419
Query: 382 IETMLKTGRLATQTG-LDLQQ----RAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
+E + R+A +G DL++ R G T RL+++ + + +SF R
Sbjct: 420 MEVIQNGMRMAISSGRWDLKRFNMNRQGITQVLSRLSYIASLGMMTRL--ASSFEKTRKV 477
Query: 437 S-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRV 495
S R L P WG +CP TP+GE CGL+ + + +V + S +R
Sbjct: 478 SGPRSLQPSQWGMVCPCDTPEGESCGLVKNFATLSQVT------------LDLNDSYVRA 525
Query: 496 LIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDD 555
+ + + + +V L+G ++G+ ++ A +R L+ S
Sbjct: 526 AAHALGVEEIDTVTPTDFLHYYTVFLNGTLIGI--HRYPNRLCAGIRALRRS-------- 575
Query: 556 LEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPD 615
G +P + + T P + R + + S+ + + L+ I D
Sbjct: 576 ----------GRLHPHVSISTQPRQ-----RTVQIGSDGGRIVRLL---------IIVRD 611
Query: 616 GGDG------GRRNAFPATHEEIHPTGMLSVV--------------ANLTPYSDH----- 650
G R TH + G++ V A++ PY+ H
Sbjct: 612 GKPAVTSAHLDRLRDRLCTHNDFLAEGLIEYVDVNESNDCLIAVYPADIGPYTTHLEVEP 671
Query: 651 ----------------NQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVR 694
NQS RN +Q M KQ +G RAD L PQ P+ R
Sbjct: 672 LSLLGVVAGIIPYPHHNQSARNTFQSAMGKQALGTVALNQYIRADTVLLLGAYPQRPLCR 731
Query: 695 TNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSD 754
T + ++ G NA+V V++Y+GYD+EDA + NKSS+DRG + + +DL
Sbjct: 732 TKAMSLTHYEKLGAGINAMVCVMSYSGYDIEDAQVYNKSSLDRGYGRCVVLRKHEVDLEK 791
Query: 755 -DGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSR 813
G + D L ++ DG+ G ++ + Y + +K T + R
Sbjct: 792 YAGGEFD--VILPPEKNSGTGKFKALNPDGVASKGALV---QQYDVLVNKFTPVAGGDPR 846
Query: 814 ------KGSESVFVDYVAV----DMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGV 863
K + VD+V + D S ++ QK + R R P GDKFSSRHGQKGV
Sbjct: 847 PAPLVYKYPQPAVVDHVIISPPGDYDRSLDVDQKIKVITREVRPPEPGDKFSSRHGQKGV 906
Query: 864 CSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
+ +DMPF+ GM PD+I+NPH FPSRMT+ LLE V +K
Sbjct: 907 VGLIVNGVDMPFNE-RGMCPDMIMNPHGFPSRMTVGKLLELVCSK 950
>gi|213408763|ref|XP_002175152.1| DNA-directed RNA polymerase II complex subunit Rpb2
[Schizosaccharomyces japonicus yFS275]
gi|212003199|gb|EEB08859.1| DNA-directed RNA polymerase II complex subunit Rpb2
[Schizosaccharomyces japonicus yFS275]
Length = 1210
Score = 222 bits (566), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 242/929 (26%), Positives = 370/929 (39%), Gaps = 149/929 (16%)
Query: 71 FGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSM 130
G+ P+ML++ C L G +L L E + GGYFI+NG E+V I+ ++ ++
Sbjct: 152 IGKIPIMLRSTFCILNGVSDSELYDLNECPYDQGGYFIINGSEKV----IIAQERSAANI 207
Query: 131 VRSSFRDRREGYTDKAVVIRCVRKDQSSV--TLKLYYLLNGSVRLGFWLQGK-EYL---L 184
V+ FR IR + S + ++++ + + G ++ Y+ +
Sbjct: 208 VQV-FRKAAPSPIAYVAEIRSALERGSRLISSMQIKLMARSTENSGQTIKATLPYIRSDI 266
Query: 185 PVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTR 244
P+ +V +AL D +I H+ CYD + + P + E I QD +
Sbjct: 267 PIVVVFRALGVVPDRDILEHI--CYDPN-DLQMLEMMKPCIEEAFVI-----QDKDV--- 315
Query: 245 LQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLND----NNDKFNLLIFMLQKL 300
L +IG+ G+ E A +++ + H+ K L +M+ ++
Sbjct: 316 --ALDYIGKRGSTT--GVTREKRLRYAHDILQKEMLPHITTLEGFETRKAFFLGYMVHRM 371
Query: 301 FSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDF 360
D+ D + + L G L+ + + R K +Q +E N +
Sbjct: 372 LLCALERREPDDRDHFGKKRLDLAGPLLASLFRMLFKKMTRDVYKYMQKCVETNRE---- 427
Query: 361 FNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISF 420
FNL K S I + L TG Q L R G + R F +S
Sbjct: 428 FNLTLAVK------SNTITNGLRYSLATGNWGDQKR-GLANRVGVSQVLNRYTFASTLSH 480
Query: 421 FRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRG 480
R + G + R+L WG +CP TP+G+ CGL+ +++ V+ S
Sbjct: 481 LRRTNTPIGRDG-KLAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMSYVSVGSPS-- 537
Query: 481 NIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGV--IPSSEIEKVV 538
I+ L GM SL S P V ++G +GV P E +
Sbjct: 538 ---------APIIEFLEEWGM-ESLEDYNPSASPNATKVFVNGIWLGVHRDPVHLTETLR 587
Query: 539 AHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNI 598
+ RRL +SA I D+ L LFT + RP+ + S
Sbjct: 588 SLRRRLDISAEVSIVRDIR-----------EKELRLFTDAGRICRPLFIVDNDSNSDTKG 636
Query: 599 ELI---------------------------------------GPFEQVFMEIRCPDGGDG 619
EL E+ M PD +
Sbjct: 637 ELCIRKEHIQQLLEDRDRFDINAEQRFGWSSLIASGLIEYLDAEEEETVMIAMSPDDLEL 696
Query: 620 GRR-NAFPATHEEIHPTG----------------------MLSVVANLTPYSDHNQSPRN 656
R+ NA EE+ P +L ++A++ P+ DHNQSPRN
Sbjct: 697 SRQANAGYEMQEELDPAKRVKPAPNPHVHAWTHCEIHPAMILGILASIIPFPDHNQSPRN 756
Query: 657 MYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAV 716
YQ M KQ MG + + R D L PQ P+ T + E P G NAIVA+
Sbjct: 757 TYQSAMGKQAMGIYLTNYQVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAI 816
Query: 717 LAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLH 776
L Y+GY+ ED++I+N+SS+DRG+ Y+T G V + R+ + H
Sbjct: 817 LCYSGYNQEDSIIMNQSSIDRGLFRSIFYRTYMDQEKKIGMTVMEEFERPTRSTTLRMKH 876
Query: 777 SVID---SDGLPYVGQ-------MIHPGEPYCSIYDKTTNSWRTNSR-------KGSESV 819
D DGL G +I P +++ + +++ + +ES
Sbjct: 877 GTYDKLEDDGLIAPGTRVSGDDIIIGKTAPVPPDHEELGQRTQLHAKRDVSTPLRSTESG 936
Query: 820 FVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVT 879
VD V V N + L + +R R TR P IGDKF+SRHGQKG + DMPFS
Sbjct: 937 IVDQVMV-TTNQEGL-KFVKVRMRSTRIPQIGDKFASRHGQKGTIGMTYRHEDMPFSA-Q 993
Query: 880 GMRPDLIINPHAFPSRMTIAMLLESVAAK 908
G+ PD+IINPHA PSRMT+A L+E +K
Sbjct: 994 GIVPDIIINPHAIPSRMTVAHLVECQLSK 1022
>gi|326479873|gb|EGE03883.1| DNA-directed RNA polymerase III subunit RPC2 [Trichophyton equinum
CBS 127.97]
Length = 1210
Score = 222 bits (565), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 124/298 (41%), Positives = 169/298 (56%), Gaps = 20/298 (6%)
Query: 628 THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
TH EI P +L VA L PY HNQSPRN YQC M KQ +G R D LY +
Sbjct: 728 THLEIEPFTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIANNQFLRIDSLLYAMVY 787
Query: 688 PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
PQ P+V+T T D+ P G NA+VAV++Y+GYD+EDA++LNK SVDRG Q+++
Sbjct: 788 PQKPMVKTRTIELTNYDKLPAGQNAMVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRK 847
Query: 748 ETIDLSDDGNKV-DRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTN 806
+ +L N DR R N + H ++D+DGL VG+ + PGE Y I +T +
Sbjct: 848 YSANLKSHSNGTKDRLVGPTRENGVSIRKHGLLDNDGLAAVGEKVSPGEVY--INKETPD 905
Query: 807 SWRTNSRKGSES-------------VFVDYVAVD---MKNSKNLPQKANIRFRHTRNPII 850
+ ++ GS++ DY +D + ++ Q ++ R TR P +
Sbjct: 906 NALSSGITGSDAGLPVKYNPTPQTYKLPDYSYIDKVMISTTEGESQLIKVQTRQTRRPEV 965
Query: 851 GDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
GDKFSSRHGQKGV + DMPF+ TG+ PD+I+NPH FPSRMT+ +LE VA K
Sbjct: 966 GDKFSSRHGQKGVVGIIAEQADMPFTD-TGLVPDIIMNPHGFPSRMTVGKMLELVAGK 1022
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 103/447 (23%), Positives = 192/447 (42%), Gaps = 56/447 (12%)
Query: 36 DHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVS 95
+ CR ++Y ++ D F+Y+ V R G+ PVML++ +C L ++++ +
Sbjct: 165 NECRLRDMTYAAPILVD--FEYVRGRQRVKRNGTAIGRMPVMLRSSKCVLSNKSAREMYT 222
Query: 96 LKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKD 155
L E + GGYFI+NG E+ VIL ++ + V ++E RK
Sbjct: 223 LHECPLDPGGYFIVNGTEK----VILVQEQLSKNRVIVETDPKKEIVQASVTSSSHERKS 278
Query: 156 QSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKK 215
+S + +K G + L + + +P+ I+LKA+ +D E+ L D +Y+
Sbjct: 279 KSYIIMK-----KGRIYLRHNVLNDD--IPIVILLKAMGIQSDKEML-LLVAGVDMEYQ- 329
Query: 216 EKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEH---------FQPVIDGLQSES 266
E I E LS+ T+ Q L+++G F P +E+
Sbjct: 330 -----------EDFAINFEEAVKLSIYTQQQALEYLGARIKINRKASGFGPARRNYVAEA 378
Query: 267 YYAVAETVIRDYIFVHLNDNN--DKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLP 324
A++ +I V + D N K + M +++ S+ D+ D + N+ + L
Sbjct: 379 IEAISSVIIS---HVQVQDMNFRPKALYVTHMARRVLMAKLDPSLVDDRDYVGNKRLELA 435
Query: 325 GHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIET 384
G L+ + ++ + + K I D++ + + F+ + + + ++ + +I T
Sbjct: 436 GQLLALLFEDLFKKFCFDIKMNI-DKVLKKPVRTEAFDAYPVVAIHGNHITQGMNRAIAT 494
Query: 385 ---MLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRK 440
LK R+ +RAG T RL+++ + + + F R S R
Sbjct: 495 GNWSLKRFRM---------ERAGVTHVLSRLSYIAALGMMTRI--SSQFEKTRKVSGPRA 543
Query: 441 LLPESWGFLCPVHTPDGEPCGLLNHMT 467
L P +G LC TP+GE CGL+ ++
Sbjct: 544 LQPSQFGMLCTSDTPEGEACGLVKNLA 570
>gi|296809049|ref|XP_002844863.1| DNA-directed RNA polymerase III subunit RPC2 [Arthroderma otae CBS
113480]
gi|238844346|gb|EEQ34008.1| DNA-directed RNA polymerase III subunit RPC2 [Arthroderma otae CBS
113480]
Length = 1211
Score = 221 bits (564), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 124/298 (41%), Positives = 169/298 (56%), Gaps = 20/298 (6%)
Query: 628 THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
TH EI P +L VA L PY HNQSPRN YQC M KQ +G R D LY +
Sbjct: 729 THLEIEPFTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIANNQFLRIDSLLYAMVY 788
Query: 688 PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
PQ P+V+T T D+ P G NA+VAV++Y+GYD+EDA++LNK SVDRG Q+++
Sbjct: 789 PQKPMVKTRTIELTNYDKLPAGQNAMVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRK 848
Query: 748 ETIDLSDDGNKV-DRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTN 806
+ +L N DR R N + H ++D+DGL VG+ + PGE Y I +T +
Sbjct: 849 YSANLKSYSNGTKDRLVGPTRENGVSIRKHGLLDNDGLAAVGEKVSPGEVY--INKETPD 906
Query: 807 SWRTNSRKGSES-------------VFVDYVAVD---MKNSKNLPQKANIRFRHTRNPII 850
+ ++ GS++ DY +D + ++ Q ++ R TR P +
Sbjct: 907 NALSSGITGSDAGLPVKYNPTPQTYKLPDYSYIDKVMISTTEGESQLIKVQTRQTRRPEV 966
Query: 851 GDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
GDKFSSRHGQKGV + DMPF+ TG+ PD+I+NPH FPSRMT+ +LE VA K
Sbjct: 967 GDKFSSRHGQKGVVGIIAEQADMPFTD-TGLVPDIIMNPHGFPSRMTVGKMLELVAGK 1023
Score = 90.9 bits (224), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 102/447 (22%), Positives = 192/447 (42%), Gaps = 56/447 (12%)
Query: 36 DHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVS 95
+ CR ++Y ++ D F+Y+ V R G+ PVML++ +C L ++++ +
Sbjct: 166 NECRLRDMTYAAPILVD--FEYVRGRQRVKRNGTAIGRMPVMLRSSKCVLSNKSAREMYT 223
Query: 96 LKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKD 155
L E + GGYFI+NG E+ VIL ++ + V ++E RK
Sbjct: 224 LHECPLDPGGYFIVNGTEK----VILVQEQLSKNRVIVETDSKKEIVQASVTSSSHERKS 279
Query: 156 QSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKK 215
+S + +K G + L + + +P+ I+LKA+ +D E+ L D +Y+
Sbjct: 280 KSYIIMK-----KGRIYLRHNVLNDD--IPIVILLKAMGIQSDKEML-LLVAGVDLEYQ- 330
Query: 216 EKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEH---------FQPVIDGLQSES 266
E I E L + T+ Q L+++G F P +E+
Sbjct: 331 -----------EDFAINFEEAIKLGIFTQQQALEYLGARIKINRKASGFGPARRNYVAEA 379
Query: 267 YYAVAETVIRDYIFVHLNDNN--DKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLP 324
A++ +I V + D N K + +M +++ S+ D+ D + N+ + L
Sbjct: 380 IEAISSVIIS---HVQVQDMNFRPKALYVTYMARRVLMAKLDPSLVDDRDYVGNKRLELA 436
Query: 325 GHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIET 384
G L+ + ++ + + K I D++ + + F+ + + + ++ + +I T
Sbjct: 437 GQLLALLFEDLFKKFCFDIKMNI-DKVLKKPVRTEAFDAYPVVAIHGNHITQGMNRAIAT 495
Query: 385 ---MLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRK 440
LK R+ +RAG T RL+++ + + + F R S R
Sbjct: 496 GNWSLKRFRM---------ERAGVTHVLSRLSYIAALGMMTRI--SSQFEKTRKVSGPRA 544
Query: 441 LLPESWGFLCPVHTPDGEPCGLLNHMT 467
L P +G LC TP+GE CGL+ ++
Sbjct: 545 LQPSQFGMLCTSDTPEGEACGLVKNLA 571
>gi|253741841|gb|EES98701.1| DNA-directed RNA polymerase subunit B' [Giardia intestinalis ATCC
50581]
Length = 1239
Score = 221 bits (563), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 258/1010 (25%), Positives = 423/1010 (41%), Gaps = 202/1010 (20%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CRQ ++Y + DV + + S + G P+ML++ RC L ++ +
Sbjct: 103 CRQRNMTYAAPITIDVRCRASNKSSVQYYKDICIGYIPIMLRSNRCILANKSRKQQAFFQ 162
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
E + GGYFI+ G E+ S++L +Q ++M R +G + V +
Sbjct: 163 ECPDDPGGYFIVRGAEK---SILLAEQ---ITMNRIVLGRNTDGNIEVTVASNTTERKSR 216
Query: 158 SVTL---KLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHL--------- 205
L K +YL++ + +P+ + KA+ ND+ + + +
Sbjct: 217 CAVLYKNKKFYLIHNKF--------NKKPIPIVTIFKAMGFVNDVTVLSLIGTDQLFLDY 268
Query: 206 ------TCCYDEKYKKEKG-------------------------AVGSPLVSERVKIILA 234
C D+ Y +E+ A+ + E + LA
Sbjct: 269 MSLSVQECSNDKIYTQEQALKYLADRIVVRTYANTNVNFPTSPVAMTAKASIESARDCLA 328
Query: 235 E--VQDLSLTTRLQCLQHIGEHFQPVID--------------------GLQSESYYAVAE 272
+ + + RL LQ + ++ QP G +S S A+A+
Sbjct: 329 HFVLSHIPVVERLN-LQQVAQNIQPQTSASTASNTSVSTHTGTTATSVGGKSGSVSAMAK 387
Query: 273 TVIRDYIFVHLND--------NNDKFNLL-----IFMLQKLFSLVDHTSV-SDNPDSLQN 318
I V ++ N +FN L + + + L D + D+ D + N
Sbjct: 388 PAIGSGASVVASNTGSTAPPVNMARFNWLPKAVYLATMVRRAILFDFGVIKGDSKDFVGN 447
Query: 319 QEILLPGHLITIYLKEKLEDWL----RKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNP 374
++I G L+ + + + L RK +++ + +N G +L N V +P
Sbjct: 448 KKIETAGDLLELIFDDAFKTLLAHMARKVDVILRSD-KNRGT-----DLTNYDVVSLVDP 501
Query: 375 SKQIGTSIETMLKTGRLATQ-TGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASF--A 431
S I + + + TG + G+D R G + + L+ L +IS V R +S
Sbjct: 502 SI-ITRAFNSAISTGNWKIERIGVD---RVGVS---QVLSRLSYISTLGQVTRLSSTFDK 554
Query: 432 GLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTS 491
++++ R L G CP TP+GE G++ +++ R++ +D + S
Sbjct: 555 AMKSSGPRMLNFSQMGIFCPSDTPEGESVGIVKNLSIMARIS---------KDENADSIS 605
Query: 492 ILRVLIGVGMIPSLPKLVKSGPPAVLS----VLLDGRVVGVIPSSEIEKVVAHLRRLKVS 547
L + IGV + S SG L V L+G + GVI ++ + LR +
Sbjct: 606 KLLMSIGVEDLAS----CWSGDTFSLGYGYMVFLNGTIKGVIAKDMLKGFIITLRTFR-- 659
Query: 548 AASVIPDDLEVGYVP----LSLGGAYPGLYLFTSPPKFVRP---VRNISLPSEESQNIEL 600
GY+ + +Y+ + RP V N L +IEL
Sbjct: 660 ---------RKGYISYLTSFHFNDEHQAVYINCDSGRACRPLLIVENGKL-KLTLNDIEL 709
Query: 601 IGPFEQVFME------IRCPDGGDGGRRNAFPA----------THEEIHPTGMLSVVANL 644
+ ++ F++ + D + +NA+ A TH EI +L V L
Sbjct: 710 LVNNQKCFVDFIYEGKVEYLDVNEA--KNAYIAMDTKDLTPQHTHCEIESYTLLGYVVGL 767
Query: 645 TPYSDHNQSPRNMYQCQMAKQTMGFSVQALKF----RADQKLYHLQTPQTPIVRTNTYTK 700
PY HNQSPRN YQC M KQ G A+ F R + ++ L PQ P+ T
Sbjct: 768 IPYPHHNQSPRNCYQCSMGKQASG----AIAFNQFERFETAMFLLDYPQRPLTSTKILKL 823
Query: 701 YGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVD 760
G + P G NA V V++Y+ +D+EDA+ILN+S++DRG IY++ + +L+ G+K
Sbjct: 824 TGYERLPAGQNATVCVMSYSSFDIEDALILNRSAIDRGFGRCSIYRSVSAELNSTGSKSV 883
Query: 761 RGQK--LFRRNKDA----KSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTN-SWRTNSR 813
G K L KD +S H+V D DGL VG + G+ + TN ++
Sbjct: 884 DGTKDVLLGPPKDHLKQYESYHAVED-DGLCAVGAHLKTGDIVINKGRHVTNIPGLSDGP 942
Query: 814 KGSESV---------------FVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRH 858
+ +E++ ++D V V N NL K + R R P +GDKFSSRH
Sbjct: 943 EAAETLIKSPESLKSPLETITYIDKVLVTTNNDGNLLIK--VLTREPRRPEVGDKFSSRH 1000
Query: 859 GQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
GQKGVC + D+PF+ G+ PDLI+NPH +PSRMT+A LLE ++ K
Sbjct: 1001 GQKGVCGLIVSQSDLPFTS-QGIVPDLIMNPHGYPSRMTVAKLLELLSNK 1049
>gi|290973756|ref|XP_002669613.1| DNA-directed RNA polymerase II [Naegleria gruberi]
gi|284083163|gb|EFC36869.1| DNA-directed RNA polymerase II [Naegleria gruberi]
Length = 1233
Score = 221 bits (563), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 236/908 (25%), Positives = 401/908 (44%), Gaps = 125/908 (13%)
Query: 65 VRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRS------ 118
+ + G P+ML++ C L ++ Q + + E + GGYFI+NG E+V +
Sbjct: 200 IHNQIPLGSIPIMLRSVYCML--SEVQDVTDVGECPFDSGGYFIINGGEKVIIAQERMAT 257
Query: 119 ---VILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGF 175
+ K S V + GY + + Q + + L++ ++
Sbjct: 258 NHVYVFKKAMSKFSYVAEIRSSQEGGYRAPSGFFIKMEPKQGNKKGGIGGLIHATI---- 313
Query: 176 WLQGKEYL---LPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKII 232
Y+ +P+ I+ +AL D EI H+ ++ E + P + E V ++
Sbjct: 314 -----PYIRQDIPIVILFRALSCQADKEIIKHIIYNLNDGQMME---LLRPSLEEAVAVL 365
Query: 233 LAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKFN- 291
V L +IG+ + G E AE +++ + H+ + ++
Sbjct: 366 SNTV----------ALDYIGKRGNTL--GASQEKRMNHAEEILQKEMLPHVGIGDTSYDR 413
Query: 292 ---LLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQ 348
+ +M+ +L D+ D N+ + L G L+ + KK+++
Sbjct: 414 KAYFIGYMVHRLLLGALGRRPLDDRDHYGNKRLELAGGLLQGLFLQLF-------KKVVK 466
Query: 349 DEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQ 408
E+E+ KK + I N + I ++ L TG Q D+ RAG
Sbjct: 467 -EMESTLKK-SILKSSEIDVAPAVN-KRTITKGLQYSLATGNWGVQGSRDI--RAGVAQV 521
Query: 409 AERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTS 468
RL + +S R ++ +G + + R+L WG +CP TP+G CGL+ ++
Sbjct: 522 LNRLTYTSTLSHLRRLNTPIERSG-KQAAPRQLHNTQWGVICPAETPEGGACGLVKNLAL 580
Query: 469 TCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGV 528
+ D +T I ++L +G I L +L +S V L+G +GV
Sbjct: 581 MSYITVGTD-----------KTHISKMLDELG-INKLHELDESDLNKYTKVFLNGMWMGV 628
Query: 529 IPSSEIEKVVAHLRRLKVSAA-----SVIPD--DLEVGYVPLSLGGAYPGLYLFTS---- 577
+ + ++V HLR L+ + A S++ D + EV S A P L++
Sbjct: 629 HHTPD--ELVKHLRVLRRTGAVDMQVSIVRDVREREVRIWCDSGRCARP-LFIVDRDHDT 685
Query: 578 ---PPKFVRPVRNISL--------------PSEESQNIELIGPFEQVFMEIRCPDGGD-- 618
+ V+ +R ++ +EE ++I + F ++ + + G
Sbjct: 686 LFIKNQHVQALRENTMNWDNLLEQGLVELIDTEEEESIMIAMDFRELVEKRSSANEGKSR 745
Query: 619 -GGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFR 677
GG R P TH EIHP+ +L ++ ++ P+ DHNQSPRN YQ M KQ MG + + R
Sbjct: 746 KGGSRQ--PYTHAEIHPSMILGILGSIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFQQR 803
Query: 678 ADQKLYHLQTPQTPIVRTN--TYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSV 735
D + L PQ P+V T Y ++G E P G NA+VA+ Y+GY+ ED++I+N+S++
Sbjct: 804 MDTLAHVLYYPQRPLVTTQPMEYLRFG--ELPAGQNAVVAIACYSGYNQEDSVIMNQSAI 861
Query: 736 DRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDA---KSLHSVIDSDGLPYVGQMIH 792
DRG+ Y+T + GN + + +R+ A S + ++ DG+ G +
Sbjct: 862 DRGLFRSVFYRTYSDHERKKGNFLLENFEKPKRDTTAGMKTSTYEKLEDDGIIAPGVRVS 921
Query: 793 PGE---------PYCSIYDKTTNSWR---TNSRKGSESVFVDYVAVDMKNSKNLPQKANI 840
+ P S KT+ R + + +E+ VD V V +S+ + I
Sbjct: 922 GSDIIIGKTVPLPEESAKQKTSRQTRLDMSTPLRSNENGIVDTVVV-TTDSEGF-KFVKI 979
Query: 841 RFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAM 900
+ R R P IGDKFSSRHGQKG C + D+PF+ G+ PD+I+NPHA PSRMT+
Sbjct: 980 KVRVVRIPQIGDKFSSRHGQKGTCGITYRQEDLPFTR-EGIVPDIIVNPHAIPSRMTVGQ 1038
Query: 901 LLESVAAK 908
L+E + K
Sbjct: 1039 LIECLLGK 1046
>gi|219116262|ref|XP_002178926.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217409693|gb|EEC49624.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 1212
Score = 221 bits (563), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 238/963 (24%), Positives = 394/963 (40%), Gaps = 146/963 (15%)
Query: 28 DEGLSEMFDH-CRQAKISYTGKLMADVEF-QYL------------DAGSPVVRERFN--- 70
D ++ MF H R ++Y+ L DV+ QY D G PV E
Sbjct: 117 DGTITNMFPHEARLRNMTYSAPLYVDVDLNQYQVGREVNVNDPSEDLGEPVATEHAKKEF 176
Query: 71 FGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSM 130
G P+ML++ C L D L L E + GGYF++NG E+V I+ ++ +
Sbjct: 177 LGYVPIMLRSLFCVLSDKDDADLSDLGECVYDQGGYFVINGSEKV----IIAQERLSNNH 232
Query: 131 VRSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLL-----NGSVRLGFWLQGKEYL-- 183
V +F+ ++ + R ++ + LY + G++ Y+
Sbjct: 233 V-YAFKKKQPSKFSWVIETRSQVENSTRPVSTLYIQMYHKGGRGAIEGNQIRSTLPYIRT 291
Query: 184 -LPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLT 242
+PV I+ +AL D +I H+ Y G + + + + QD++L
Sbjct: 292 DIPVVIIFRALGYVADRDIIEHVV------YDLTDGEMMDLFRPSLEEAFVIQRQDVAL- 344
Query: 243 TRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDN----NDKFNLLIFMLQ 298
IG + + E A+ +++ + H+ K + + +
Sbjct: 345 ------DFIGR--RGSARDVTKEDRMRYAQAILQKEVLPHVGTEEHCETKKGFFIGYAVH 396
Query: 299 KLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLK---EKLEDWLRKGKKLIQDEIENNG 355
KL + D+ D + + L G L+ + KL +RK + DE G
Sbjct: 397 KLLMCRLGRAEEDDRDHFGKKRLDLAGPLLGGLFRVLFRKLTKDVRKHLQRCLDE----G 452
Query: 356 KKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFL 415
K F NI ++ N I ++ L TG + + +AG + RL +
Sbjct: 453 KHF------NIGAAIKSN---HITDGLKYSLATGNWGDK---GMATKAGVSQVLNRLTYA 500
Query: 416 RFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASY 475
+S R + + G + R+L WG +CP TP+G+ GL+ ++ + +
Sbjct: 501 SSLSHLRRCNTPLARTG-KQAKPRQLHNTHWGMVCPAETPEGQAVGLVKNLALMAYITTG 559
Query: 476 YDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSE-I 534
+ + T L + LP ++ P + ++G VG+ + +
Sbjct: 560 TAQVPVLEFLEEFSTENLTDI--------LPSVIAE--PNTCKIFVNGNWVGIHRDPKAL 609
Query: 535 EKVVAHLRRL-KVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPV-----RNI 588
E+ LRR+ + A I D+ A + ++T + RP+ + +
Sbjct: 610 EETFRSLRRMVDIDAEVSIVRDI-----------ADKEVRIYTDAGRICRPLFVVQEQKL 658
Query: 589 SLPSEESQNIELIGPFEQ-------------------------VFMEIRCPDGGDGGRRN 623
++ ++ + P E+ V ME P+ D
Sbjct: 659 AIKKHHIMQLQGMDPNEKKLTWTDLLMEGLVEYIDTEEEETTMVAME---PNDLDSDDSY 715
Query: 624 AFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLY 683
+ TH EIHP+ +L V A++ P+ DHNQSPRN YQ M KQ MG + R D +
Sbjct: 716 SSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYASNYQVRMDTMAH 775
Query: 684 HLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQ 743
L PQ P+ T E P+G N IV +L YTGY+ ED++ILN+S++DRG+
Sbjct: 776 VLHYPQKPLCTTRAMEFLHFRELPSGVNCIVGILVYTGYNQEDSLILNQSAIDRGLFRSS 835
Query: 744 IYQT--ETIDLSDDGNKVDRGQKLFRR-NKDAK-----SLHSVIDSDGLPYVGQMIH--- 792
Y+ + S G +LF + + D+ + +D DGL G +
Sbjct: 836 YYRCYIDQEKASTVGTIGSLTSELFEKPSMDSTRGMKHGEYGKLDDDGLVAPGTRVSGDD 895
Query: 793 -------PGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHT 845
P + + + + + S K +E VD V + +K + +R R+
Sbjct: 896 VLIGKTAPIDATAGMPSRYSKRDCSTSMKANEHGIVDNVLI--STTKEGYRFTKVRIRNV 953
Query: 846 RNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESV 905
R P IGDKF+SRHGQKG + DMPF+ V G+ PD+I+NPHA PSRMTIA L+E +
Sbjct: 954 RTPQIGDKFASRHGQKGTIGMTYRQEDMPFT-VEGIVPDIIVNPHAIPSRMTIAQLIECL 1012
Query: 906 AAK 908
K
Sbjct: 1013 LGK 1015
>gi|302657001|ref|XP_003020234.1| hypothetical protein TRV_05698 [Trichophyton verrucosum HKI 0517]
gi|291184045|gb|EFE39616.1| hypothetical protein TRV_05698 [Trichophyton verrucosum HKI 0517]
Length = 1196
Score = 221 bits (563), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 124/298 (41%), Positives = 169/298 (56%), Gaps = 20/298 (6%)
Query: 628 THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
TH EI P +L VA L PY HNQSPRN YQC M KQ +G R D LY +
Sbjct: 714 THLEIEPFTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIANNQFLRIDSLLYAMVY 773
Query: 688 PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
PQ P+V+T T D+ P G NA+VAV++Y+GYD+EDA++LNK SVDRG Q+++
Sbjct: 774 PQKPMVKTRTIELTNYDKLPAGQNAMVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRK 833
Query: 748 ETIDLSDDGNKV-DRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTN 806
+ +L N DR R N + H ++D+DGL VG+ + PGE Y I +T +
Sbjct: 834 YSANLKSYSNGTKDRLVGPTRENGVSIRKHGLLDNDGLAAVGEKVSPGEVY--INKETPD 891
Query: 807 SWRTNSRKGSES-------------VFVDYVAVD---MKNSKNLPQKANIRFRHTRNPII 850
+ ++ GS++ DY +D + ++ Q ++ R TR P +
Sbjct: 892 NALSSGITGSDAGLPVKYNPTPQTYKLPDYSYIDKVMISTTEGESQLIKVQTRQTRRPEV 951
Query: 851 GDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
GDKFSSRHGQKGV + DMPF+ TG+ PD+I+NPH FPSRMT+ +LE VA K
Sbjct: 952 GDKFSSRHGQKGVVGIIAEQADMPFTD-TGLVPDIIMNPHGFPSRMTVGKMLELVAGK 1008
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 103/447 (23%), Positives = 192/447 (42%), Gaps = 56/447 (12%)
Query: 36 DHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVS 95
+ CR ++Y ++ D F+Y+ V R G+ PVML++ +C L ++++ +
Sbjct: 151 NECRLRDMTYAAPILVD--FEYVRGRQRVKRNGTAIGRMPVMLRSSKCVLSNKSAREMYT 208
Query: 96 LKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKD 155
L E + GGYFI+NG E+ VIL ++ + V ++E RK
Sbjct: 209 LHECPLDPGGYFIVNGTEK----VILVQEQLSKNRVIVETDPKKEIVQASVTSSSHERKS 264
Query: 156 QSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKK 215
+S + +K G + L + + +P+ I+LKA+ +D E+ L D +Y+
Sbjct: 265 KSYIIMK-----KGRIYLRHNVLNDD--IPIVILLKAMGIQSDKEML-LLVAGVDMEYQ- 315
Query: 216 EKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEH---------FQPVIDGLQSES 266
E I E LS+ T+ Q L+++G F P +E+
Sbjct: 316 -----------EDFAINFEEAVKLSIYTQQQALEYLGARIKINRKASGFGPARRNYVAEA 364
Query: 267 YYAVAETVIRDYIFVHLNDNN--DKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLP 324
A++ +I V + D N K + M +++ S+ D+ D + N+ + L
Sbjct: 365 IEAISSVIIS---HVQVQDMNFRPKALYVTHMARRVLMAKLDPSLVDDRDYVGNKRLELA 421
Query: 325 GHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIET 384
G L+ + ++ + + K I D++ + + F+ + + + ++ + +I T
Sbjct: 422 GQLLALLFEDLFKKFCFDIKMNI-DKVLKKPVRTEAFDAYPVVAIHGNHITQGMNRAIAT 480
Query: 385 ---MLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRK 440
LK R+ +RAG T RL+++ + + + F R S R
Sbjct: 481 GNWSLKRFRM---------ERAGVTHVLSRLSYIAALGMMTRI--SSQFEKTRKVSGPRA 529
Query: 441 LLPESWGFLCPVHTPDGEPCGLLNHMT 467
L P +G LC TP+GE CGL+ ++
Sbjct: 530 LQPSQFGMLCTSDTPEGEACGLVKNLA 556
>gi|327300783|ref|XP_003235084.1| DNA-directed RNA polymerase III [Trichophyton rubrum CBS 118892]
gi|326462436|gb|EGD87889.1| DNA-directed RNA polymerase III [Trichophyton rubrum CBS 118892]
Length = 1210
Score = 221 bits (563), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 124/298 (41%), Positives = 169/298 (56%), Gaps = 20/298 (6%)
Query: 628 THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
TH EI P +L VA L PY HNQSPRN YQC M KQ +G R D LY +
Sbjct: 728 THLEIEPFTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIANNQFLRIDSLLYAMVY 787
Query: 688 PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
PQ P+V+T T D+ P G NA+VAV++Y+GYD+EDA++LNK SVDRG Q+++
Sbjct: 788 PQKPMVKTRTIELTNYDKLPAGQNAMVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRK 847
Query: 748 ETIDLSDDGNKV-DRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTN 806
+ +L N DR R N + H ++D+DGL VG+ + PGE Y I +T +
Sbjct: 848 YSANLKSYSNGTKDRLVGPTRENGVSIRKHGLLDNDGLAAVGEKVSPGEVY--INKETPD 905
Query: 807 SWRTNSRKGSES-------------VFVDYVAVD---MKNSKNLPQKANIRFRHTRNPII 850
+ ++ GS++ DY +D + ++ Q ++ R TR P +
Sbjct: 906 NALSSGITGSDAGLPVKYNPTPQTYKLPDYSYIDKVMISTTEGESQLIKVQTRQTRRPEV 965
Query: 851 GDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
GDKFSSRHGQKGV + DMPF+ TG+ PD+I+NPH FPSRMT+ +LE VA K
Sbjct: 966 GDKFSSRHGQKGVVGIIAEQADMPFTD-TGLVPDIIMNPHGFPSRMTVGKMLELVAGK 1022
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 103/447 (23%), Positives = 192/447 (42%), Gaps = 56/447 (12%)
Query: 36 DHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVS 95
+ CR ++Y ++ D F+Y+ V R G+ PVML++ +C L ++++ +
Sbjct: 165 NECRLRDMTYAAPILVD--FEYVRGRQRVKRNGTAIGRMPVMLRSSKCVLSNKSAREMYT 222
Query: 96 LKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKD 155
L E + GGYFI+NG E+ VIL ++ + V ++E RK
Sbjct: 223 LHECPLDPGGYFIVNGTEK----VILVQEQLSKNRVIVETDPKKEIVQASVTSSSHERKS 278
Query: 156 QSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKK 215
+S + +K G + L + + +P+ I+LKA+ +D E+ L D +Y+
Sbjct: 279 KSYIIMK-----KGRIYLRHNVLNDD--IPIVILLKAMGIQSDKEML-LLVAGVDMEYQ- 329
Query: 216 EKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEH---------FQPVIDGLQSES 266
E I E LS+ T+ Q L+++G F P +E+
Sbjct: 330 -----------EDFAINFEEAVKLSIYTQQQALEYLGARIKINRKASGFGPARRNYVAEA 378
Query: 267 YYAVAETVIRDYIFVHLNDNNDKFNLL--IFMLQKLFSLVDHTSVSDNPDSLQNQEILLP 324
A++ +I V + D N + L M +++ S+ D+ D + N+ + L
Sbjct: 379 IEAISSVIIS---HVQVQDMNFRPKALYVTHMARRVLMAKLDPSLVDDRDYVGNKRLELA 435
Query: 325 GHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIET 384
G L+ + ++ + + K I D++ + + F+ + + + ++ + +I T
Sbjct: 436 GQLLALLFEDLFKKFCFDIKMNI-DKVLKKPVRTEAFDAYPVVAIHGNHITQGMNRAIAT 494
Query: 385 ---MLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRK 440
LK R+ +RAG T RL+++ + + + F R S R
Sbjct: 495 GNWSLKRFRM---------ERAGVTHVLSRLSYIAALGMMTRI--SSQFEKTRKVSGPRA 543
Query: 441 LLPESWGFLCPVHTPDGEPCGLLNHMT 467
L P +G LC TP+GE CGL+ ++
Sbjct: 544 LQPSQFGMLCTSDTPEGEACGLVKNLA 570
>gi|374327622|ref|YP_005085822.1| DNA-directed RNA polymerase subunit beta [Pyrobaculum sp. 1860]
gi|356642891|gb|AET33570.1| DNA-directed RNA polymerase subunit beta [Pyrobaculum sp. 1860]
Length = 1127
Score = 221 bits (563), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 191/638 (29%), Positives = 303/638 (47%), Gaps = 93/638 (14%)
Query: 311 DNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVM 370
D+ D + N+ + L G L+T + + +L++ K ++ K + + +I+ V+
Sbjct: 354 DDKDHVANKRVRLVGDLMTQLFRTVFKQFLQELKSQLE-------KYYARGRIPHIQTVV 406
Query: 371 EKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASF 430
+ + + R A TG + + G + +R N+L +S+ R V S
Sbjct: 407 RPD----------IITERVRQALATGNWVGGKTGVSQILDRTNYLSTLSYLRRVVSSLS- 455
Query: 431 AGLRTT---SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSK 487
RT R L P WG LC V TP+G+ GL+ ++ + + D
Sbjct: 456 ---RTQPHFEARDLHPTQWGRLCAVETPEGQNVGLVKNLALLAEITTGVDE--------- 503
Query: 488 MRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVS 547
+ ++L G+G++P L + A V L+GR++GV P+ + ++ A +R L+
Sbjct: 504 --GEVEQMLYGMGVVPILK--ARDEGVAGAEVYLNGRLIGVHPNPD--ELAAAVRGLRRQ 557
Query: 548 AASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVR-----NISLPSEESQNIELIG 602
I D++ + L G +Y+ + + RP+ + L E + ++
Sbjct: 558 GK--ISDEINIAV----LNGV---VYVNSDGGRIRRPLLVVEDGKLKLTKEVVERVKRGD 608
Query: 603 PFEQVFMEIRCPDGGDGGRR-NAFPAT----------HEEIHPTGMLSVVANLTPYSDHN 651
++ + D NA AT H EI P+ +L VA++ PY +HN
Sbjct: 609 LTWDDLVKTGVVEYLDADEEENAHIATDPHVDLSNYTHVEIIPSSILGAVASIIPYLEHN 668
Query: 652 QSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTN 711
QSPRN Y+ MAKQ++G L ++ D + + L P+ PIV T G + P G N
Sbjct: 669 QSPRNQYEAAMAKQSLGLPQSNLLYKLDSRGHMLYYPERPIVTTRGLELIGYSKRPAGQN 728
Query: 712 AIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT-ETIDLSDDGNKVDRGQ------K 764
A+VA+L YTGY++EDA+ILNK+SV+RGM Y+T ET + G + DR + K
Sbjct: 729 AVVALLTYTGYNIEDAVILNKASVERGMFRSVFYRTYETEEQKYPGGEEDRIEIPDSSVK 788
Query: 765 LFRRNKDAKSLHSVIDSDGLP----YVGQ---MIHPGEP---YCSIYDKTTNSWRTNS-- 812
+R +S +D DG+ YV +I P Y ++ + R ++
Sbjct: 789 GYR----GPEAYSHLDEDGIAPPEVYVSSNEVLIGKTSPPRFYTTLEAERILKERRDASV 844
Query: 813 --RKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPD 870
R+G + VD V V N + +R R R P +GDKF+SRHGQKGV L
Sbjct: 845 AVRRGERGI-VDRVIVTESPEGN--KLVKVRLRELRIPELGDKFASRHGQKGVLGMLLRH 901
Query: 871 IDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
DMPF+ G+ PD+I+NPHA PSRMT+A LLES+A K
Sbjct: 902 EDMPFTE-DGIVPDIIVNPHALPSRMTVAQLLESMAGK 938
Score = 49.7 bits (117), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 57 YLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVF 116
Y+D P E F G+ P+M+K++RC+L + + E+ + GGYFI+NG ERV
Sbjct: 117 YVD-DEPYATETFYIGELPIMVKSKRCNLTRLRTGEYAKRFEDPQDFGGYFIINGSERVI 175
Query: 117 RS 118
S
Sbjct: 176 IS 177
>gi|326468641|gb|EGD92650.1| DNA-directed RNA polymerase III [Trichophyton tonsurans CBS 112818]
Length = 1210
Score = 221 bits (563), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 124/298 (41%), Positives = 169/298 (56%), Gaps = 20/298 (6%)
Query: 628 THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
TH EI P +L VA L PY HNQSPRN YQC M KQ +G R D LY +
Sbjct: 728 THLEIEPFTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIANNQFLRIDSLLYAMVY 787
Query: 688 PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
PQ P+V+T T D+ P G NA+VAV++Y+GYD+EDA++LNK SVDRG Q+++
Sbjct: 788 PQKPMVKTRTIELTNYDKLPAGQNAMVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRK 847
Query: 748 ETIDLSDDGNKV-DRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTN 806
+ +L N DR R N + H ++D+DGL VG+ + PGE Y I +T +
Sbjct: 848 YSANLKSYSNGTKDRLVGPTRENGVSIRKHGLLDNDGLAAVGEKVSPGEVY--INKETPD 905
Query: 807 SWRTNSRKGSES-------------VFVDYVAVD---MKNSKNLPQKANIRFRHTRNPII 850
+ ++ GS++ DY +D + ++ Q ++ R TR P +
Sbjct: 906 NALSSGITGSDAGLPVKYNPTPQTYKLPDYSYIDKVMISTTEGESQLIKVQTRQTRRPEV 965
Query: 851 GDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
GDKFSSRHGQKGV + DMPF+ TG+ PD+I+NPH FPSRMT+ +LE VA K
Sbjct: 966 GDKFSSRHGQKGVVGIIAEQADMPFTD-TGLVPDIIMNPHGFPSRMTVGKMLELVAGK 1022
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 103/447 (23%), Positives = 192/447 (42%), Gaps = 56/447 (12%)
Query: 36 DHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVS 95
+ CR ++Y ++ D F+Y+ V R G+ PVML++ +C L ++++ +
Sbjct: 165 NECRLRDMTYAAPILVD--FEYVRGRQRVKRNGTAIGRMPVMLRSSKCVLSNKSAREMYT 222
Query: 96 LKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKD 155
L E + GGYFI+NG E+ VIL ++ + V ++E RK
Sbjct: 223 LHECPLDPGGYFIVNGTEK----VILVQEQLSKNRVIVETDPKKEIVQASVTSSSHERKS 278
Query: 156 QSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKK 215
+S + +K G + L + + +P+ I+LKA+ +D E+ L D +Y+
Sbjct: 279 KSYIIMK-----KGRIYLRHNVLNDD--IPIVILLKAMGIQSDKEML-LLVAGVDMEYQ- 329
Query: 216 EKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEH---------FQPVIDGLQSES 266
E I E LS+ T+ Q L+++G F P +E+
Sbjct: 330 -----------EDFAINFEEAVKLSIYTQQQALEYLGARIKINRKASGFGPARRNYVAEA 378
Query: 267 YYAVAETVIRDYIFVHLNDNNDKFNLL--IFMLQKLFSLVDHTSVSDNPDSLQNQEILLP 324
A++ +I V + D N + L M +++ S+ D+ D + N+ + L
Sbjct: 379 IEAISSVIIS---HVQVQDMNFRPKALYVTHMARRVLMAKLDPSLVDDRDYVGNKRLELA 435
Query: 325 GHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIET 384
G L+ + ++ + + K I D++ + + F+ + + + ++ + +I T
Sbjct: 436 GQLLALLFEDLFKKFCFDIKMNI-DKVLKKPVRTEAFDAYPVVAIHGNHITQGMNRAIAT 494
Query: 385 ---MLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRK 440
LK R+ +RAG T RL+++ + + + F R S R
Sbjct: 495 GNWSLKRFRM---------ERAGVTHVLSRLSYIAALGMMTRI--SSQFEKTRKVSGPRA 543
Query: 441 LLPESWGFLCPVHTPDGEPCGLLNHMT 467
L P +G LC TP+GE CGL+ ++
Sbjct: 544 LQPSQFGMLCTSDTPEGEACGLVKNLA 570
>gi|302505599|ref|XP_003014506.1| hypothetical protein ARB_07068 [Arthroderma benhamiae CBS 112371]
gi|291178327|gb|EFE34117.1| hypothetical protein ARB_07068 [Arthroderma benhamiae CBS 112371]
Length = 1196
Score = 221 bits (562), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 124/298 (41%), Positives = 169/298 (56%), Gaps = 20/298 (6%)
Query: 628 THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
TH EI P +L VA L PY HNQSPRN YQC M KQ +G R D LY +
Sbjct: 714 THLEIEPFTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIANNQFLRIDSLLYAMVY 773
Query: 688 PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
PQ P+V+T T D+ P G NA+VAV++Y+GYD+EDA++LNK SVDRG Q+++
Sbjct: 774 PQKPMVKTRTIELTNYDKLPAGQNAMVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRK 833
Query: 748 ETIDLSDDGNKV-DRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTN 806
+ +L N DR R N + H ++D+DGL VG+ + PGE Y I +T +
Sbjct: 834 YSANLKSYSNGTKDRLVGPTRENGVSIRKHGLLDNDGLAAVGEKVSPGEVY--INKETPD 891
Query: 807 SWRTNSRKGSES-------------VFVDYVAVD---MKNSKNLPQKANIRFRHTRNPII 850
+ ++ GS++ DY +D + ++ Q ++ R TR P +
Sbjct: 892 NALSSGITGSDAGLPVKYNPTPQTYKLPDYSYIDKVMISTTEGESQLIKVQTRQTRRPEV 951
Query: 851 GDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
GDKFSSRHGQKGV + DMPF+ TG+ PD+I+NPH FPSRMT+ +LE VA K
Sbjct: 952 GDKFSSRHGQKGVVGIIAEQADMPFTD-TGLVPDIIMNPHGFPSRMTVGKMLELVAGK 1008
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 103/447 (23%), Positives = 192/447 (42%), Gaps = 56/447 (12%)
Query: 36 DHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVS 95
+ CR ++Y ++ D F+Y+ V R G+ PVML++ +C L ++++ +
Sbjct: 151 NECRLRDMTYAAPILVD--FEYVRGRQRVKRNGTAIGRMPVMLRSSKCVLSNKSAREMYT 208
Query: 96 LKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKD 155
L E + GGYFI+NG E+ VIL ++ + V ++E RK
Sbjct: 209 LHECPLDPGGYFIVNGTEK----VILVQEQLSKNRVIVETDPKKEIVQASVTSSSHERKS 264
Query: 156 QSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKK 215
+S + +K G + L + + +P+ I+LKA+ +D E+ L D +Y+
Sbjct: 265 KSYIIMK-----KGRIYLRHNVLNDD--IPIVILLKAMGIQSDKEML-LLVAGVDMEYQ- 315
Query: 216 EKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEH---------FQPVIDGLQSES 266
E I E LS+ T+ Q L+++G F P +E+
Sbjct: 316 -----------EDFAINFEEAVKLSIYTQQQALEYLGARIKINRKASGFGPARRNYVAEA 364
Query: 267 YYAVAETVIRDYIFVHLNDNNDKFNLL--IFMLQKLFSLVDHTSVSDNPDSLQNQEILLP 324
A++ +I V + D N + L M +++ S+ D+ D + N+ + L
Sbjct: 365 IEAISSVIIS---HVQVQDMNFRPKALYVTHMARRVLMAKLDPSLVDDRDYVGNKRLELA 421
Query: 325 GHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIET 384
G L+ + ++ + + K I D++ + + F+ + + + ++ + +I T
Sbjct: 422 GQLLALLFEDLFKKFCFDIKMNI-DKVLKKPVRTEAFDAYPVVAIHGNHITQGMNRAIAT 480
Query: 385 ---MLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRK 440
LK R+ +RAG T RL+++ + + + F R S R
Sbjct: 481 GNWSLKRFRM---------ERAGVTHVLSRLSYIAALGMMTRI--SSQFEKTRKVSGPRA 529
Query: 441 LLPESWGFLCPVHTPDGEPCGLLNHMT 467
L P +G LC TP+GE CGL+ ++
Sbjct: 530 LQPSQFGMLCTSDTPEGEACGLVKNLA 556
>gi|315048479|ref|XP_003173614.1| DNA-directed RNA polymerase III subunit RPC2 [Arthroderma gypseum CBS
118893]
gi|311341581|gb|EFR00784.1| DNA-directed RNA polymerase III subunit RPC2 [Arthroderma gypseum CBS
118893]
Length = 1210
Score = 221 bits (562), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 124/298 (41%), Positives = 169/298 (56%), Gaps = 20/298 (6%)
Query: 628 THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
TH EI P +L VA L PY HNQSPRN YQC M KQ +G R D LY +
Sbjct: 728 THLEIEPFTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIANNQFLRIDSLLYAMVY 787
Query: 688 PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
PQ P+V+T T D+ P G NA+VAV++Y+GYD+EDA++LNK SVDRG Q+++
Sbjct: 788 PQKPMVKTRTIELTNYDKLPAGQNAMVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRK 847
Query: 748 ETIDLSDDGNKV-DRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTN 806
+ +L N DR R N + H ++D+DGL VG+ + PGE Y I +T +
Sbjct: 848 YSANLKSYSNGTKDRLVGPTRENGVSIRKHGLLDNDGLAAVGEKVSPGEVY--INKETPD 905
Query: 807 SWRTNSRKGSES-------------VFVDYVAVD---MKNSKNLPQKANIRFRHTRNPII 850
+ ++ GS++ DY +D + ++ Q ++ R TR P +
Sbjct: 906 NALSSGITGSDAGLPVKYNPTPQTYKLPDYSYIDKVMISTTEGESQLIKVQTRQTRRPEV 965
Query: 851 GDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
GDKFSSRHGQKGV + DMPF+ TG+ PD+I+NPH FPSRMT+ +LE VA K
Sbjct: 966 GDKFSSRHGQKGVVGIIAEQADMPFTD-TGLVPDIIMNPHGFPSRMTVGKMLELVAGK 1022
Score = 89.7 bits (221), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 102/447 (22%), Positives = 192/447 (42%), Gaps = 56/447 (12%)
Query: 36 DHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVS 95
+ CR ++Y ++ D F+Y+ V R G+ PVML++ +C L ++++ +
Sbjct: 165 NECRLRDMTYAAPILVD--FEYVRGRQRVKRNGTAIGRMPVMLRSSKCVLSNKSAREMYT 222
Query: 96 LKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKD 155
L E + GGYFI+NG E+ VIL ++ + V ++E RK
Sbjct: 223 LHECPLDPGGYFIVNGTEK----VILVQEQLSKNRVIVETDPKKEIVQASVTSSSHERKS 278
Query: 156 QSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKK 215
+S + +K G + L + + +P+ I+LKA+ +D E+ L D +Y+
Sbjct: 279 KSYIIMK-----KGRIYLRHNVLNDD--IPIVILLKAMGIQSDKEML-LLVAGVDMEYQ- 329
Query: 216 EKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEH---------FQPVIDGLQSES 266
E I E L++ T+ Q L+++G F P +E+
Sbjct: 330 -----------EDFAINFEEAVKLNIYTQQQALEYLGARIKINRKASGFGPARRNYVAEA 378
Query: 267 YYAVAETVIRDYIFVHLNDNN--DKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLP 324
A++ +I V + D N K + M +++ S+ D+ D + N+ + L
Sbjct: 379 IEAISSVIIS---HVQVQDMNFRPKALYVTHMARRVLMAKLDPSLVDDRDYVGNKRLELA 435
Query: 325 GHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIET 384
G L+ + ++ + + K I D++ + + F+ + + + ++ + +I T
Sbjct: 436 GQLLALLFEDLFKKFCFDIKMNI-DKVLKKPVRTEAFDAYPVVAIHGNHITQGMNRAIAT 494
Query: 385 ---MLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRK 440
LK R+ +RAG T RL+++ + + + F R S R
Sbjct: 495 GNWSLKRFRM---------ERAGVTHVLSRLSYIAALGMMTRI--SSQFEKTRKVSGPRA 543
Query: 441 LLPESWGFLCPVHTPDGEPCGLLNHMT 467
L P +G LC TP+GE CGL+ ++
Sbjct: 544 LQPSQFGMLCTSDTPEGEACGLVKNLA 570
>gi|344323318|gb|AEN14442.1| DNA-dependent RNA polymerase II second largest subunit [Lentinula
edodes]
Length = 1228
Score = 220 bits (561), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 245/953 (25%), Positives = 388/953 (40%), Gaps = 166/953 (17%)
Query: 51 ADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILN 110
D+ ++ + P + G+ P+ML++ C L+G Q L L E + GGYFI+N
Sbjct: 155 GDMAWETENDDGPENSTKVWIGKVPIMLRSTFCILRGLADQDLYDLNECPYDSGGYFIIN 214
Query: 111 GLERVFRS----------VILPKQNYPMSM---VRSSFRDRREGYTDKAVVIRCVRKDQS 157
G E+V + V Q P++ +RS+ + G T ++ + Q
Sbjct: 215 GSEKVLIAQERMATNHVYVFAKAQPSPINFLAEIRSAVE--KGGKTISQFQVKMFHRGQE 272
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
+ +++ +P+ +V + L +D +I H+ CYD + +
Sbjct: 273 RAMGNVMKATIPYIKVD---------IPIWVVFRGLGVISDRDILEHI--CYDMQ-DAQM 320
Query: 218 GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRD 277
+ P + E I EV L IG + GL E A+ +++
Sbjct: 321 LEMLKPCIDEGFVIQDREV----------ALDFIGN--RGTTTGLSREKRIRYAQEILQK 368
Query: 278 YIFVHLN----DNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLK 333
+ H++ + K +M+ +L D+ D + + L G L+ +
Sbjct: 369 EMLPHVSMAEGSESKKAFFFGYMIHRLLLAALERRELDDRDHFGKKRLDLAGPLLANLFR 428
Query: 334 EKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLAT 393
+ + +Q +E + + FNLA K + I ++ L TG
Sbjct: 429 MLFRKLTKDVYRYMQKCVETHKE----FNLALAVK------HQTITNGLKYSLATGNWGD 478
Query: 394 QTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVH 453
Q + +AG + R + +S R + G + R+L WG +CP
Sbjct: 479 QKK-SMSSKAGVSQVLNRYTYASTLSHLRRCNTPLGREG-KIAKPRQLHNTHWGMVCPAE 536
Query: 454 TPDGEPCGLLNHMT--STCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKS 511
TP+G+ CGL+ ++ S V SY ++ L G+ SL + S
Sbjct: 537 TPEGQACGLVKNLALMSCISVGSY-------------SAPVIEFLEEWGL-ESLEENAHS 582
Query: 512 GPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVS-----AASVIPDDLEVGYVPLSLG 566
P + V ++G +GV E +V +R+L+ SV+ D E
Sbjct: 583 STPTMTKVFVNGVWMGV--HREPANLVKTIRKLRRKDDISPEVSVVRDIRE--------- 631
Query: 567 GAYPGLYLFTSPPKFVRP---VRNISLPSEE--------SQN----------------IE 599
L L+T + RP V N L ++ QN +E
Sbjct: 632 ---RELRLYTDAGRVCRPLFIVENQQLVLQKKHIKWLLNGQNDEGSEFKWEHLVKNGIVE 688
Query: 600 LIGPFEQVFMEIRC----------------PDGGDG-----GRRNAFPATHEEIH----P 634
L+ E+ + I P DG R A + H H P
Sbjct: 689 LLDAEEEETVMISMTPEDLENSRLQQQGIDPHENDGEFDPAARLKAGISAHTWTHCEIHP 748
Query: 635 TGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVR 694
+ +L + A++ P+ DHNQSPRN YQ M KQ MG + R D L PQ P+
Sbjct: 749 SMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLIRMDTMANILYYPQKPLAT 808
Query: 695 TNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSD 754
T + E P G NAIVA+L Y+GY+ ED++I+N+SS+DRG+ IY +DL
Sbjct: 809 TRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRS-IYYRSYMDLEK 867
Query: 755 DG--NKVDRGQKLFRRN--KDAKSLHSVIDSDGLPYVGQ-------MIHPGEPYCSIYDK 803
+++ +K R N + + ++ DGL G +I P ++
Sbjct: 868 KSGVQQLEEFEKPTRDNTLRMKHGTYDKLEDDGLIAPGTGVRGEDIIIGKTAPIPPDSEE 927
Query: 804 TTNSWRTNSR-------KGSESVFVDYVAVDMKNSKNLPQK-ANIRFRHTRNPIIGDKFS 855
RT++R K +ES VD V + NS+ QK IR R TR P IGDKF+
Sbjct: 928 LGQRTRTHTRRDVSTPLKSTESGIVDQVLI-TTNSEG--QKFVKIRVRSTRIPQIGDKFA 984
Query: 856 SRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
SRHGQKG + DMPF+ G+ PD++INPHA PSRMTI L+E + +K
Sbjct: 985 SRHGQKGTIGITYRQEDMPFTA-EGIVPDIVINPHAIPSRMTIGHLVECLLSK 1036
>gi|399216338|emb|CCF73026.1| unnamed protein product [Babesia microti strain RI]
Length = 1202
Score = 220 bits (560), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 239/936 (25%), Positives = 389/936 (41%), Gaps = 118/936 (12%)
Query: 39 RQAKISYTGKLMADVE---FQYLDA-GSPVVRERFNF-----GQFPVMLKTRRCHLQGAD 89
R ++Y+ ++ D++ + Y +A G +++R ++ G+ P+MLK+ C +
Sbjct: 132 RLRNLTYSSQIYVDIDQEIYIYDEAKGQETLQDRTSYPRISLGKIPMMLKSMYCWTRNVS 191
Query: 90 SQKLVSLKEEAAEMGGYFILNGLERV----------FRSVILPKQNYPMSMVRSSFRDRR 139
L + E + GGYFI+ G ERV F V KQ S V + R +
Sbjct: 192 EDDLADIGECPYDQGGYFIVGGGERVLIAQERMANNFIYVFKKKQPSKFSWV-AEIRSQM 250
Query: 140 EGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDL 199
E Y+ K + + + +L L +PV I+ +AL D
Sbjct: 251 E-YSQGTSAFSIKMKAKQATANVIGNRFRSYDQLVATLPYIRTDIPVAILFRALGCVADK 309
Query: 200 EIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQD-LSLTTRLQCLQHIGEHFQPV 258
+I + +D+K + + ++ ++D L TT+ CL IG+ V
Sbjct: 310 DILQRIAYDFDDK--------------QMLNLMKPTLEDALDFTTQDACLDFIGKRGPTV 355
Query: 259 IDGLQSESYYAVAETVIRDYIFVH----LNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPD 314
G + A+ ++R + H L + K + +M+ +L D+ D
Sbjct: 356 --GAPRDKRIQYAKDLLRKEVLPHVGTELGVESKKCYFIGYMVHRLLLAKLGRINQDDRD 413
Query: 315 SLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNP 374
+ + + G L+ + K+++Q +I+ G+ FD
Sbjct: 414 HFGKKRLDMAGPLMASSFGTLFRKMAKDAKRILQHQIDC-GRTFDVAGAIR--------S 464
Query: 375 SKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLR 434
+ QI ++ L TG + R G + RL F +S R ++ G +
Sbjct: 465 ASQITQGLQYQLLTGNWGKDRDGKVV-RTGVSQVLNRLTFASCLSHLRRLNTPLGREG-K 522
Query: 435 TTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILR 494
R+L WG +CP TP+G+ GL+ ++ C ++ ++I
Sbjct: 523 MAKPRQLHNTHWGMICPAETPEGQAVGLVKNLALMCSIS-----------VGGASSTICE 571
Query: 495 VLIGVGMIPSLPKLVKSGPPAVLS----VLLDGRVVGVIPSSE--IEKVVAHLRRLKVSA 548
+L +GM SL ++ PP V+ V ++G +G ++ + ++ RR +S
Sbjct: 572 LLTELGM-DSLDEV----PPEVIKDRVKVFINGTWIGCFDEADNLVNTLLHFRRRCDISH 626
Query: 549 ASVIPDDLEVGYVPL--SLGGAYPGLYLFTSPPKF------VRPVRNISLPSE------- 593
+ I ++ V + G A L + + V +R+ S +E
Sbjct: 627 ETSIIKEIVSKEVKIFTDAGRAMRPLLVVHDGNRLALKRSHVEKIRDGSYINECSSENTS 686
Query: 594 ------ESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPA-THEEIHPTGMLSVVANLTP 646
ES +E I E+ + N TH EIHP +L V A++ P
Sbjct: 687 AWNWLVESGVVEYIDCEEEEMCMVSMFVQDLHSNSNYCSTYTHCEIHPCMILGVCASIIP 746
Query: 647 YSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEY 706
+ D NQSPRN YQ M KQ MG R D + L PQ P+V T E
Sbjct: 747 FPDQNQSPRNTYQSAMGKQAMGVYSSNFNLRMDTLSHLLYYPQKPLVCTRAMEFLRFREL 806
Query: 707 PTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGN----KVDRG 762
P G NAIVA++ Y+GY+ ED++I+N+SS+DRG+ +T + G+ K +R
Sbjct: 807 PAGINAIVAIMCYSGYNQEDSLIMNQSSIDRGLFRSVFNRTYVSEEKQQGSVTIEKFERP 866
Query: 763 QKLFRRNKDAKSLHSVIDSDGLPYVGQ----------MIHPGEPYCSIYDKTTNSWRTNS 812
F + +S +DSDGL G I P P + K S
Sbjct: 867 NPQFVAGM-KRGDYSKLDSDGLVEPGSRVLGDDVIIGRISPTLPNQDVAPKRDCSL---C 922
Query: 813 RKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDID 872
+ SE+ V V + + NSK + ++ R R P IGDKF+SRHGQKG + D
Sbjct: 923 LRRSENGVVHSVLLSV-NSKG-SRFCKVKVRSVRIPQIGDKFASRHGQKGTIGITYRMED 980
Query: 873 MPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
MPF+ G+ PD+I+NPHA PSRMTI L+E + K
Sbjct: 981 MPFT-CQGIVPDIIMNPHAVPSRMTIGHLVECLVGK 1015
>gi|120561279|gb|ABM27024.1| RNA polymerase II second largest subunit, partial [Monosiga
brevicollis]
Length = 904
Score = 220 bits (560), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 202/783 (25%), Positives = 334/783 (42%), Gaps = 112/783 (14%)
Query: 184 LPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTT 243
+PV ++ +AL +D I H+ +D+ + E +K L E + T
Sbjct: 79 IPVVVLFRALGFEDDRSILEHIIYDFDDME-----------MMELLKPSLDEA--FVVQT 125
Query: 244 RLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDN----NDKFNLLIFMLQK 299
R L IG + G+ + A +++ + H+ K L +M+ +
Sbjct: 126 REVALDLIGRRSMAAV-GMSKDMRVRFARDILQKEMLPHIGVGPQCEQAKAFFLGYMVHR 184
Query: 300 LFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFD 359
D+ D N+ + L G L+ + + +K + + D + N KF
Sbjct: 185 TLQAALRRRELDDRDHYGNKRLDLAGSLVAYLFRTLFKQLTKKLTRKVTDLVNRN-HKFM 243
Query: 360 FFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFIS 419
L +++ +G+ + L TG Q + RAG + RL F +S
Sbjct: 244 VITLLDVEI---------LGSGLRYSLATGNWGDQKKAH-EARAGVSQVLNRLTFASTLS 293
Query: 420 FFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSR 479
R ++ G + R+L WG++CP TP+G GL+ +++ + D
Sbjct: 294 HLRRLNSPIDRTG-KIAKPRQLHNTHWGYICPAETPEGHAVGLVKNLSLMASLTVGSDD- 351
Query: 480 GNIRDFSKMRTSILRVLIGVGMIPSLPKL-VKSGPPAVLSVLLDGRVVGVIPSSEIEKVV 538
+ + L+G + L +L +S V ++G VG+ S +++V
Sbjct: 352 -----------TPVHDLLGASGLDYLDRLPSRSAIKTATKVFVNGNWVGI--HSHPDELV 398
Query: 539 AHLRRLK-----VSAASVIPD--DLEVGYVPLSLGGAYPGLYL---------FTSPPKFV 582
+R+++ S S+ + + EV V S P L + F V
Sbjct: 399 TTMRQMRRAHSVASEVSIFRNIREREVHIVTDSGRTTRPLLIVNKDDANRCRFALKNSHV 458
Query: 583 RPVRN----------------ISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFP 626
+RN I + EE+ I + G + + PD N +
Sbjct: 459 MALRNDQMSWTHLVQRGVVEYIDVNEEETTMIAMYGHDPLALLAL--PDSNTTSYCNTY- 515
Query: 627 ATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQ 686
TH EIHP+ +LS+ A++ P+ DHNQSPRN YQ M KQ MG + R D + L
Sbjct: 516 -THCEIHPSMILSICASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLY 574
Query: 687 TPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQ 746
PQ P+V+T + E P G NAIV ++ YTGY+ ED++I+N+ SV+RG+ Y+
Sbjct: 575 YPQRPLVQTRSMNYLRFAELPAGINAIVGIMTYTGYNQEDSVIMNRYSVERGLFRSVFYR 634
Query: 747 TETIDLSDDGNKVDRGQKLFRRNKDA--KSLHSVIDSDGL-----------PYVGQMIHP 793
+ + ++ + K R N ++ + ++ DG+ VG+++
Sbjct: 635 SYAASEHSERGEIIKIDKPSRENCIGMRRANYDKLEDDGIVAPGIRVSGDDAIVGRLLEL 694
Query: 794 GEPYCSIYDKTTNSWRTNSR------KGSESVFVD--YVAVDMKNSKNLPQKANIRFRHT 845
E + + R R + SES +D ++V+ K K + IR R
Sbjct: 695 PEA-----TRQASGGRFEKRDKSLFLRSSESGIIDGVMISVNQKGEKFV----KIRVRSV 745
Query: 846 RNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESV 905
R P IGDKF+SRHGQKG C + DMPF+ +G+ PD+I+NPHA PSRMTI L+E +
Sbjct: 746 RTPQIGDKFASRHGQKGTCGMQYAQEDMPFAA-SGVVPDIIVNPHAIPSRMTIGHLIECL 804
Query: 906 AAK 908
K
Sbjct: 805 LGK 807
>gi|68300802|gb|AAY89343.1| RNA polymerase II second largest subunit [Antirrhinum majus]
Length = 1198
Score = 219 bits (559), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 230/926 (24%), Positives = 391/926 (42%), Gaps = 103/926 (11%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAG--SPVVRERFNF-----GQFPVMLKTRRCHLQGADS 90
R ++Y+ L DV + + G V E F G+ P+ML++ C L
Sbjct: 123 ARLRNLTYSSPLYVDVTKRVVKKGFDCEEVTETQEFAKVFIGKVPIMLRSSYCSLYHLPE 182
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
+ L+ L E + GGYFI+NG E+ V++ ++ + V F+ R+ +R
Sbjct: 183 KDLMDLGECPYDQGGYFIVNGSEK----VLIAQEKMSTNHV-YVFKKRQPNKYSYVAEVR 237
Query: 151 CVRKDQSSVTLKLYYLL---NGSVR--LGFWLQGK-EYL---LPVGIVLKALVDTNDLEI 201
+ + Q+ ++ + +G+ R G ++ Y+ +P+ I+ +AL D +I
Sbjct: 238 SIAESQNKAPSGMFVRMLSRSGAKRGTSGQYIYATLPYIRTEVPIIIIFRALGFVADKDI 297
Query: 202 FNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDG 261
H+ CYD K + E ++ L E + + L +IG+ + G
Sbjct: 298 LEHI--CYDFNDSK---------MMELLRPFLEEA--FVIQNQQVALDYIGKRGSTI--G 342
Query: 262 LQSESYYAVAETVIRDYIFVHLND----NNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQ 317
+ + A +++ + H+ K +++ +L D+ D
Sbjct: 343 VTRDKRIKYAREILQREMLPHVGTEEYCETKKAYYFGYIINRLLLCALGRRPEDDRDHYA 402
Query: 318 NQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQ 377
N+ + L G L+ + R + +Q ++ NGK N++ ++ +K
Sbjct: 403 NKRLDLAGPLLAGLFRMLFRKLTRDVRSYVQKCVD-NGKD------VNLQFAIK---AKT 452
Query: 378 IGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS 437
I + ++ + TG RAG + RL + +S R ++ G +
Sbjct: 453 ITSGLKYSIATGNWGQANAAG--TRAGVSQVLNRLTYASTLSHLRRLNSPIGREG-KLAK 509
Query: 438 VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLI 497
R+L WG +CP TP+G+ CGL+ ++ + + + I +F ++ I
Sbjct: 510 PRQLHNSHWGMMCPAETPEGQACGLVKNLALMVYI-TVGSAANPILEFLDEWSTENFEEI 568
Query: 498 GVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSE-IEKVVAHLRR-LKVSAASVIPDD 555
+IP K + ++G +G+ + E + + + LRR + V+ I D
Sbjct: 569 SPAVIPQATK-----------IFVNGNWIGIHRNPELLVRTLRQLRRQVDVNTEVGIIRD 617
Query: 556 LEVGYVPL--SLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN------------IELI 601
+ + + L G L++ ++ ++L ES + +E +
Sbjct: 618 IHLKELRLYTDYGRCSRPLFIVDKQRLVIKKKDILALQQRESADEYGWHDLVRNGSVEYV 677
Query: 602 GPFEQVFMEIRCPDGGDGGRRNAFPATHEE------IHPTGMLSVVANLTPYSDHNQSPR 655
E+ I R+ A + E IHP+ +L V A++ P+ DHNQSPR
Sbjct: 678 DTEEEETTMISMTINDLINSRHNPDAAYSETYTHCEIHPSLVLGVCASIIPFPDHNQSPR 737
Query: 656 NMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVA 715
N YQ M KQ MG V + R D Y L PQ P+V T + P G NAIVA
Sbjct: 738 NTYQSAMGKQAMGIYVTNYQLRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVA 797
Query: 716 VLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSL 775
+ Y+GY+ ED++I+N+SS+DRG +++ + G V R+
Sbjct: 798 IACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGCPNRDNTMGMR 857
Query: 776 HSVIDS---DGLPYVGQMIH----------PGEPYCSIYDKTTNSWRTNSRKGSESVFVD 822
H D DG G + P P + + T ++S + SES VD
Sbjct: 858 HGSYDKLEDDGFAPPGTRVSGDDVIIGKTTPFTPDENQNIRFTRQDHSSSLRHSESGVVD 917
Query: 823 YVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMR 882
V + N+ L + +R R R P IGDKFSSRHGQKG + DMP+S + G+
Sbjct: 918 QVLL-TTNADGL-RFVKVRIRSVRIPQIGDKFSSRHGQKGTIGMTYTQDDMPWS-IEGIT 974
Query: 883 PDLIINPHAFPSRMTIAMLLESVAAK 908
PD+I+NPHA PSRMTI L+E + K
Sbjct: 975 PDIIVNPHAIPSRMTIGQLIECIMGK 1000
>gi|352682853|ref|YP_004893377.1| DNA-directed RNA polymerase subunit B [Thermoproteus tenax Kra 1]
gi|350275652|emb|CCC82299.1| DNA-directed RNA polymerase subunit B [Thermoproteus tenax Kra 1]
Length = 1127
Score = 219 bits (559), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 176/551 (31%), Positives = 266/551 (48%), Gaps = 64/551 (11%)
Query: 392 ATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT---SVRKLLPESWGF 448
A TG + + G + +R N+L +S+ R V S RT R L P WG
Sbjct: 418 ALATGNWVGGKTGVSQILDRTNYLSTLSYLRRVVSSLS----RTQPHFEARDLHPTQWGR 473
Query: 449 LCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKL 508
LC V TP+G+ GL+ ++ V D +S+ +L +G++P L
Sbjct: 474 LCAVETPEGQNVGLVKNLALLAEVTMGVDE-----------SSVEGLLYNLGVVPVLE-- 520
Query: 509 VKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSL--- 565
+ A V L+GR++GV P E E++V ++R ++ + D++ V + S+
Sbjct: 521 ARRNGVAGAEVYLNGRLIGVHP--EPEELVKNIRTMRRQGK--VHDEVNVALLGNSIYVN 576
Query: 566 --GGAY--PGLYLFTSPPKFVRPVRNISLPSEESQN-------IELIGPFEQVFMEIRCP 614
GG P L + K R + E + N IE + E+ I
Sbjct: 577 CDGGRIRRPLLVVENGKLKLTREHVQKLVAGELTWNDLIKMGVIEYLDADEEENAHIAVD 636
Query: 615 DGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQAL 674
+ + TH EI P+ +L +A++ PY +HNQSPRN Y+ MAKQ++G +
Sbjct: 637 P-----QEDLAGYTHMEIIPSSILGAIASIIPYLEHNQSPRNQYEAAMAKQSLGLPQANI 691
Query: 675 KFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSS 734
++ D + + L P+ PIV T G P G NA+VA+L YTGY++EDA+I+NKSS
Sbjct: 692 MYKLDSRGHMLYYPERPIVTTRGLELIGYSRKPAGQNAVVALLTYTGYNIEDAIIMNKSS 751
Query: 735 VDRGMCHGQIYQT-ETIDLSDDGNKVDRGQ--KLFRRNKDAKSLHSVIDSDGLP----YV 787
V+RG Y+T ET + G + DR + R + +D DG+ YV
Sbjct: 752 VERGFMRSNFYRTYETEEQKYPGGEEDRIEVPDPSARGYRGPEAYGHLDEDGIAPPEVYV 811
Query: 788 --GQMI----HPGEPYCSIYDKTTNSWRTNS----RKGSESVFVDYVAVDMKNSKNLPQK 837
G++I P Y ++ + R ++ R+G + + VD V + N +
Sbjct: 812 SGGEVIIGKTAPPRFYMTLETEKILKERRDASIPVRRGEKGI-VDRVVITESPEGN--KL 868
Query: 838 ANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMT 897
+R R R P +GDKF+SRHGQKGV L DMPF+ G+ PD+I+NPHA PSRMT
Sbjct: 869 VKVRLRELRVPELGDKFASRHGQKGVIGMLLRQEDMPFTE-DGIVPDIIVNPHAMPSRMT 927
Query: 898 IAMLLESVAAK 908
+ LLES+A K
Sbjct: 928 VGQLLESIAGK 938
Score = 44.3 bits (103), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 57 YLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVF 116
Y+D P E G+ P+++K++RC+L ++ E+ + GGYFI+NG ERV
Sbjct: 117 YVD-DEPYATETIYAGELPIVVKSKRCNLTRLKPEEYAKKFEDPEDPGGYFIINGSERVV 175
Query: 117 RS 118
S
Sbjct: 176 IS 177
>gi|410932093|ref|XP_003979428.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like,
partial [Takifugu rubripes]
Length = 982
Score = 219 bits (559), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 216/769 (28%), Positives = 334/769 (43%), Gaps = 91/769 (11%)
Query: 184 LPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTT 243
+P+ IV +AL +D +I H+ +D+ P + E VK L E +
Sbjct: 75 VPIIIVFRALGFVSDRDILEHIIYDFDD-----------PEMMEMVKPSLDEA--FVIQE 121
Query: 244 RLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQK 299
+ L IG + G+ E A+ V++ + H+ ++ K L +M+ +
Sbjct: 122 QNVALNFIGS--RGAKPGVTKERRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHR 179
Query: 300 LFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFD 359
L D+ D N+ + L G L+ + ++ L++ + Q I + GK F+
Sbjct: 180 LLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEIRIYAQKFI-DRGKDFN 238
Query: 360 FFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFIS 419
LA IK ++ I ++ L TG Q RAG + RL F +S
Sbjct: 239 L-ELA-IK-------TRIISDGLKYSLATGNWGDVKKAH-QARAGVSQVLNRLTFASTLS 288
Query: 420 FFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSR 479
R V+ G + R+L WG +CP TP+G GL+ ++ Y S
Sbjct: 289 HLRRVNSPIGRDG-KLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMA-----YISV 342
Query: 480 GNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVA 539
G+ + IL L M +L ++ + + ++G VG+ + E+++
Sbjct: 343 GS------QPSPILEFLEEWSM-ENLEEISPAAIADATKIFVNGCWVGI--HKDPEQLMN 393
Query: 540 HLRRLK------VSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSE 593
LR+L+ VS S+I D E + G L K + R+I E
Sbjct: 394 TLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKRRHIDQLKE 453
Query: 594 ESQN------------IELIGPFEQ--VFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLS 639
N +E I E+ V + + D + G TH EIHP+ +L
Sbjct: 454 REYNNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEKGVAYCSTYTHCEIHPSMILG 513
Query: 640 VVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYT 699
V A++ P+ DHNQSPRN YQ M KQ MG + R D + L PQ P+V T +
Sbjct: 514 VCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSME 573
Query: 700 KYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKV 759
E P G N+IVA+ +YTGY+ ED++I+N+S+VDRG Y++ S G
Sbjct: 574 YLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKG--F 631
Query: 760 DRGQKLFRRNKDA-----KSLHSVIDSDGLPYVGQMIHPGE-----PYCSIYDKTTNSWR 809
D+ + + ++ +++ +D DGL G + GE ++ D
Sbjct: 632 DQEEIFEKPTRETCQGMRHAIYEKLDDDGLIAPGVRV-SGEDVIIGKTVTLPDNEDELES 690
Query: 810 TNSR----------KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHG 859
TN R + SE+ VD V V + + IR R R P IGDKF+SRHG
Sbjct: 691 TNRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGY--KFCKIRVRSVRIPQIGDKFASRHG 748
Query: 860 QKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
QKG C + DMPF+ G+ PD+IINPHA PSRMT+ L+E + K
Sbjct: 749 QKGTCGIQYRQEDMPFT-CEGITPDIIINPHAIPSRMTVGHLIECLQGK 796
>gi|407852465|gb|EKG05946.1| DNA-directed RNA polymerase III subunit, putative [Trypanosoma
cruzi]
Length = 1186
Score = 219 bits (558), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 231/892 (25%), Positives = 389/892 (43%), Gaps = 105/892 (11%)
Query: 67 ERFNFGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNY 126
+ G+ P+MLK+ RC+LQ D +L L E + GGYF+++G E+ V++ ++
Sbjct: 163 QNMELGRIPIMLKSMRCNLQNKDEDELPRLNECPHDQGGYFVISGTEK----VLIAQERQ 218
Query: 127 PMSMVRSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLL---NGSVRLGFWLQGKEYL 183
+ V + R + K++V + K ++ L Y +G L + + L
Sbjct: 219 AANHVYAFSRQKGLLCEIKSIVEGSLNKPRTLQILMPYKKKGPGHGYENLLCRVAQMDEL 278
Query: 184 LPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTT 243
+P+ ++ +AL +D EI T D K + E ++ + + L + T
Sbjct: 279 IPLFVLFRALDMGSDKEILQ--TVVPDLK---------DAAMLEMLRGSMEDASTLQIFT 327
Query: 244 RLQCLQHIGEHF--QPVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLF 301
R + L IG+ Q + LQ ++ + ++ ++ V + K + +M+ +L
Sbjct: 328 RDEALWFIGKRLGKQDSRENLQRDAQGLLMRDLL-PHMGVDCAADRSKCLFIGYMVHRLL 386
Query: 302 SLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFF 361
L + D L ++ I + G L+T L + L ++ K + D N G F
Sbjct: 387 LLALGRREDTDRDFLGHKRIDVAGALLTFQLNQFLVQVRKEMVKTVHDYSTNRGGVVSFG 446
Query: 362 NLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFF 421
+ + S+ I + L TG +++ T+ RL + +S
Sbjct: 447 RILH---------SRLITDGLRRCLATGNFGDMKSGNIKTGVAQTLN--RLTYSSSLSNL 495
Query: 422 RAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGN 481
R + S A + T R L WG++CPV TP+G GLL ++ C ++ D G
Sbjct: 496 RRIQNPIS-ASSKATKPRNLHCTQWGYICPVETPEGGSIGLLKNLALMCLISRGSDHTGV 554
Query: 482 IRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGV------------- 528
++ T + LP L V V ++G ++GV
Sbjct: 555 VQAVQARITGFHSI--------DLPGLADV---RVARVFVNGTLIGVHRDPERLLRELRA 603
Query: 529 -IPSSEIEKVVAHLRRLKVSAASVIPDD---------LEVGYVPLSLGGAYPGLYLFTSP 578
E+ V+ +R ++ V D +E + L G+ P
Sbjct: 604 RRRGGELSNEVSIVRDIRDREIRVFSDGGRCLRPLFVVERSRIKLQ----KTGIGELLEP 659
Query: 579 PKFVRPVRNISLPSEESQN-IELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIHPTGM 637
K + R IS + +ELI E+ + I +N + + E + P+ +
Sbjct: 660 SKTLGGKREISWNRIIKKGYVELIDCEEEDSLLIAMT--MTEVSKNYYYSHCE-MDPSMI 716
Query: 638 LSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNT 697
L + A++ PY +HNQSPRN YQ M KQ MG R D + L PQ P+VRT
Sbjct: 717 LGICASIIPYPNHNQSPRNTYQSAMGKQAMGIYASNFNMRMDTTAHVLFYPQKPLVRTKA 776
Query: 698 YTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT------ETID 751
+ ++ P G NA+VA+ Y+GY+ ED++I+++S+V+RG +++ D
Sbjct: 777 MSYMRSNDLPAGHNAVVAIACYSGYNQEDSIIMSRSAVERGFFRSAFWRSYKATEERKKD 836
Query: 752 LSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGL-----PYVGQMIHPGEPYCSIYDKTTN 806
+ + DR K+ R ++ ++ +D+DGL P +G I G+ K N
Sbjct: 837 VRETFENPDR--KICRVK---RADYTKLDADGLIKPGMPVIGGDILVGKTIPISEAKLEN 891
Query: 807 SWRTNSR----------KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSS 856
+ ++R + SE V+ V + +NS N K ++ R + P IGDKF S
Sbjct: 892 AALDDTRLLKRDCSIASRTSEKGVVERVML-TENSGNRFTK--VKIRTIKIPNIGDKFCS 948
Query: 857 RHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
RHGQKG + DMPF+ G+ PDLIINPHA PSRMT+A L+E++A K
Sbjct: 949 RHGQKGTNGIQFRQEDMPFN-RDGIVPDLIINPHAIPSRMTVAHLIETLAGK 999
>gi|2654279|emb|CAA47069.1| DNA-directed RNA polymerase [Euplotes octocarinatus]
Length = 1194
Score = 219 bits (557), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 213/896 (23%), Positives = 384/896 (42%), Gaps = 115/896 (12%)
Query: 71 FGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSM 130
G+ PVM+++ C L G D + +KE + GGYFI+NG E+V I+ + +
Sbjct: 169 MGKVPVMVRSGFCSLNGIDESERWEMKECFHDQGGYFIINGGEKV----IVAHERMANNF 224
Query: 131 VRSSFRDRREGYTDKAVV---IRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---- 183
V + + ++ A V + + + ++K+Y G R G G +
Sbjct: 225 VYVFHKKQPSKFSWVAEVRSQVDASNRPPNQFSIKMYS--KGQRRAGGSFSGGKIFGQTL 282
Query: 184 ----------LPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIIL 233
+PV I+ +AL +D EI + + CYD A+ + L
Sbjct: 283 CASIPYINADIPVAILFRALNCISDKEILDRI--CYDSTDSHMMEAMRASLE-------- 332
Query: 234 AEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDNND----K 289
+ T+ L +IG + G+ E A +++ + H++ + K
Sbjct: 333 ---EGTPFLTQEDALSYIGS--RGTAGGVGREERIRHAREILKRHFLPHVSTKDSCESQK 387
Query: 290 FNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQD 349
+ +M +L + D+ D + + + G L+ + + ++++ + ++
Sbjct: 388 SYFIGYMCHRLLNAHLGRIKEDDRDHYGKKRLDMAGSLLGMLFRNLFRRFVKEAGRYLKA 447
Query: 350 EIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQA 409
+ + + NI K +K+ I ++ L TG T ++ + G +
Sbjct: 448 QADKG-------DSLNITKAFKKDI---ISDGLKYALATGNWGTNAAGEVS-KTGVSQVL 496
Query: 410 ERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTST 469
RL F +S R ++ +G + T R+L WG +CP TP+G+ CGL+ +++
Sbjct: 497 NRLTFASTLSHLRRLNTPLQKSG-KLTKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLM 555
Query: 470 CRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVI 529
V+ + +L G +L + S V ++G +G+
Sbjct: 556 AFVS-----------VGSAAERLREILENYGT-ENLVSISPSDIHESTKVFVNGCWIGI- 602
Query: 530 PSSEIEKVVAHLRRLKVSAASVIPDDLE-VGYVP-------LSLGGAYPGLYLFTSPPKF 581
+E E ++ +++ ++ A +IP ++ V +P G L++
Sbjct: 603 -HNESEDLINNIKLMR--RALLIPKEISIVRDIPNREVKFYTDHGRVQRPLFIVDDNRLI 659
Query: 582 VRPVRNISLPSEESQN------------IELIGPFEQVFMEIRCPDGGDGGRRNAFPATH 629
++ + L E + +E + E+ I G R TH
Sbjct: 660 LKKTHVVRLQDHERSDSMNFDDTLKEGLVEFLDVEEEETSMIAMNVGDLENRNYCSTYTH 719
Query: 630 EEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQ 689
EIHP+ +L V A++ P+ DHNQSPRN YQ M KQ MG + R D + L PQ
Sbjct: 720 CEIHPSMILGVCASIIPFPDHNQSPRNCYQSAMGKQAMGVYCSNYQIRMDTLAHVLYYPQ 779
Query: 690 TPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTET 749
P+V + + E P G ++IVA+ YTGY+ D++I++++ +DRG C ++
Sbjct: 780 KPLVVARSLDFPHVKELPPGCDSIVAITCYTGYNQVDSVIMSQAPIDRG-CFRSVFYKNI 838
Query: 750 IDLSDDGNKVDR---GQKLFRRNKDAKSLHSVIDSDGLPY-----------VGQMIHPGE 795
++ ++ R + RRN D ++ +D DGL + +G+ P
Sbjct: 839 FEIPVRVERLLRYPDSTVVGRRNGD----YTKLDIDGLIFPGKNVLGDDIIIGKTALPRN 894
Query: 796 PYCSIYDKTTNSWR---TNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGD 852
+ D TN + + S + SE +D +V + +++ ++ R R P IGD
Sbjct: 895 LFNDEMDDQTNLIKKDDSTSLRHSEKGIID--SVILTSNEEGDSFTKVKMRAIRIPQIGD 952
Query: 853 KFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
KF+SRHGQKG + D+PF+ G+ PD+I+NPHA PSRMTI L+E +A+K
Sbjct: 953 KFASRHGQKGTVGMTYRQEDIPFTQ-EGIIPDIIVNPHAIPSRMTIGHLIECLASK 1007
>gi|120561243|gb|ABM27006.1| RNA polymerase II second largest subunit, partial [Zancudomyces
culisetae]
gi|363543580|gb|AEW26268.1| RPB2 [Zancudomyces culisetae]
Length = 899
Score = 218 bits (556), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 220/793 (27%), Positives = 335/793 (42%), Gaps = 117/793 (14%)
Query: 184 LPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQD-LSLT 242
+PV +V +AL +I H+ CYD SE V+ A +++ +
Sbjct: 59 VPVVVVFRALGTVAAKDILEHI--CYDSND------------SEMVEEFKASIEEAFVIQ 104
Query: 243 TRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHL----NDNNDKFNLLIFMLQ 298
R L IG+ V G+ E A +++ H+ ++ K L +M+
Sbjct: 105 DREVSLDFIGKRGTTV--GVNREKRIKYAREILQKEFLPHVGTQPHNETRKTYFLGYMVH 162
Query: 299 KLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKF 358
+L V D+ D + + L G L+ + + + R + +Q IE+ +
Sbjct: 163 RLLQCVLERRDQDDRDHYGRKRLDLAGPLLAMLFRNLFKKMTRDMTRYLQKCIESRRE-- 220
Query: 359 DFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFI 418
FNL+ K S I ++ L TG Q +Q R G R F +
Sbjct: 221 --FNLSMALK------SNTITAGLKYSLATGNWGDQKKA-MQSRTGVAQVLNRYTFASTL 271
Query: 419 SFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDS 478
S R + G + R+L WG +CP TP+G+ CGL+ ++ + DS
Sbjct: 272 SHLRRCNTPIGRDG-KIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMAHITVGSDS 330
Query: 479 RGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVV 538
SIL L M +L +LV + ++G VG+ E ++
Sbjct: 331 -----------GSILMFLEEWAM-ENLEELVGDSLADSTKIFVNGVWVGI--HKEAVRLA 376
Query: 539 AHL----RRLKVSAASVIPDDL---------EVGYVPLSLGGAYPGLYLFTSPPKFVRPV 585
A L RRL+ S I D+ + G V L T P
Sbjct: 377 ATLKQLRRRLEFSYELSIVHDVREREIRILTDAGRVCRPLFVVNHMRLALTKPVVAAIEA 436
Query: 586 RNIS------------------LPSEESQNIELI-GPFE----QVFMEI-RCPDGGDG-- 619
R + L +EE + ++ P E + F+ + P DG
Sbjct: 437 RRLGERDAVRWHDLLSEGIVEYLDAEEEETAMIVMSPHELDESRRFVHTGQLPPKDDGRI 496
Query: 620 -GRRNA--FPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKF 676
RRN TH EIHP+ +L + A++ P+ DHNQSPRN YQ M KQ MG + +
Sbjct: 497 RSRRNIGITTWTHCEIHPSMILGICASIVPFPDHNQSPRNTYQSAMGKQAMGILLTNYQV 556
Query: 677 RADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVD 736
R D L PQ P+ T+ E P G NAIVA+L YTGY+ ED++I+N+SS+D
Sbjct: 557 RMDTLANLLYYPQKPLATTHAMEYIKFSELPAGQNAIVAILCYTGYNQEDSLIMNQSSID 616
Query: 737 RGMCHGQIYQTETIDLSDDGNKVD-RGQKLFRRNKDAKSL------HSVIDSDGLPYVGQ 789
RG+ +++ D+ +K+ R F + A +L + +D DGL G
Sbjct: 617 RGLFRSIFFRS----YMDEEDKLGMRTMGRFEKPSRASTLRLKIGTYEKLDDDGLIAPGT 672
Query: 790 MIHPGE---------PYCSIY--DKTTNSWRTNSRK---GSESVFVDYVAVDMKNSKNLP 835
+ + P S+ +T + ++ K +ES VD V + + +
Sbjct: 673 RVTGDDIIIGKTTPIPIASLELGQRTLAHTKLDASKPLRATESGIVDQVL--LTTNGDGF 730
Query: 836 QKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSR 895
+ +R R TR P IGDKF+SRHGQKG ++ DMPF+ G+ PDLIINPHA PSR
Sbjct: 731 KFVKVRVRSTRVPQIGDKFASRHGQKGTIGIVYTSEDMPFTA-DGIVPDLIINPHAIPSR 789
Query: 896 MTIAMLLESVAAK 908
MTI L+E + +K
Sbjct: 790 MTIGHLIECLLSK 802
>gi|302698289|ref|XP_003038823.1| DNA-dependent RNA polymerase II second largest subunit [Schizophyllum
commune H4-8]
gi|300112520|gb|EFJ03921.1| DNA-dependent RNA polymerase II second largest subunit [Schizophyllum
commune H4-8]
Length = 1204
Score = 218 bits (556), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 235/941 (24%), Positives = 389/941 (41%), Gaps = 152/941 (16%)
Query: 59 DAGSPVVR----------ERFNFGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFI 108
+AG P+ R ++ + G+ P+ML++ C L Q++ L E + GGYFI
Sbjct: 133 EAGEPIWRTVKEDEGNAVQKVHIGKVPIMLRSAFCILNKLSDQEIYDLNECPYDSGGYFI 192
Query: 109 LNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSSVT---LKLYY 165
+NG E+V ++ ++ + V + + A + V K +++ +K+++
Sbjct: 193 INGSEKV----LIAQERMATNHVYVFAKAQPSPINFLAEIRSAVEKGGKTISQFQVKMFH 248
Query: 166 LLNGSVRLGFWLQGKEYL---LPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGS 222
Y+ +P+ +V +AL +D +I +H+ CY+
Sbjct: 249 RTKERSMGNVIKATIPYIKVDIPIWVVFRALNVISDRDILDHI--CYEST---------D 297
Query: 223 PLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVH 282
P + E +K + + + R L IG + GL E A+ +++ + H
Sbjct: 298 PQMLELLKPCIDD--GFVIQEREVALDFIGN--RGTTTGLNRERRVRYAQEILQKELLPH 353
Query: 283 LN----DNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLED 338
++ + K +M+ +L D+ D + + L G L+ +
Sbjct: 354 VSMAEGSESKKAYFFGYMVHRLLLAALERRELDDRDHFGKKRLDLAGPLLAGLFRMLFRK 413
Query: 339 WLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLD 398
+ + +Q +E+N K F+ NLA IK I ++ L TG Q
Sbjct: 414 MTKDVYRYLQKCVESN-KDFNL-NLA-IKH-------HTISQGLKYSLATGNWGDQKKAG 463
Query: 399 LQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGE 458
+AG + R + +S R + G + R+L WG +CP TP+G+
Sbjct: 464 -AAKAGVSQVLNRYTYASTLSHLRRCNTPLGREG-KIAKPRQLHNTHWGMVCPAETPEGQ 521
Query: 459 PCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLS 518
CGL+ ++ S S + DF + + SL + +S
Sbjct: 522 ACGLVKNL-SLMACISVGSISAPVIDFLQEWN-----------LESLEENARSSEATFTK 569
Query: 519 VLLDGRVVGVIPSSEIEKVVAHLRRLK-----VSAASVIPDDLEVGYVPLSLGGAYPGLY 573
V ++G +GV + K+V +RRL+ SV+ D E L
Sbjct: 570 VFVNGVWMGV--HRDPAKLVETIRRLRRKDDISQEVSVVRDIRE------------KELR 615
Query: 574 LFTSPPKFVRP---VRNISLPSEESQN-----------------IELI-GPFEQVFMEIR 612
++T + RP V N SL E+ IEL+ E+ M
Sbjct: 616 VYTDAGRVCRPLFIVENQSLLLEKHHVHALTQGAKWDSLVKQGIIELLDAEEEETVMIAM 675
Query: 613 CPDGGDGGR--------------------------RNAFPATHEEIHPTGMLSVVANLTP 646
P+ + R N TH EIHP+ +L + A++ P
Sbjct: 676 TPEDLENSRMTPEERAAQQAEEEVDMTATKVAHTMANTHTWTHCEIHPSMILGICASIIP 735
Query: 647 YSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEY 706
+ DHNQSPRN YQ M KQ MG + R D L PQ P+ T + E
Sbjct: 736 FPDHNQSPRNTYQSAMGKQAMGIFLTNFILRMDTMANILYYPQKPLATTRSMEYLKFREL 795
Query: 707 PTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLF 766
P G NAIVA+L Y+GY+ ED++I+N+SS+DRG+ Y+ T D+ + ++
Sbjct: 796 PAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSIYYRGYT-DMEKKSVGMMPTEEFE 854
Query: 767 RRNKD-----AKSLHSVIDSDGLPYVGQMIH----------PGEPYC-SIYDKTTNSWR- 809
+ ++D + ++ DGL G ++ P P + +T N R
Sbjct: 855 KPSRDNTLRMKHGTYDKLEDDGLIAPGTGVNGEDIIIGKTAPIPPDSEELGQRTKNHTRR 914
Query: 810 --TNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQL 867
+ K +ES +D V + +++ + +R R TR P IGDKF+SRHGQKG
Sbjct: 915 DVSTPLKSTESGIIDQVL--LTTNEDGKKLIRVRVRSTRIPQIGDKFASRHGQKGTIGIT 972
Query: 868 WPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
+ DMPF+ G+ PD++INPHA PSRMTI L+E + +K
Sbjct: 973 YRQEDMPFTA-QGIVPDIVINPHAIPSRMTIGHLVECLLSK 1012
>gi|403336158|gb|EJY67267.1| DNA-directed RNA polymerase [Oxytricha trifallax]
Length = 1239
Score = 218 bits (555), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 229/910 (25%), Positives = 384/910 (42%), Gaps = 124/910 (13%)
Query: 68 RFNFGQFPVMLKTRRCHLQGADS-QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNY 126
R G+ PVML+++ C L + Q++ K+ + GGYFI+NG E+V I+ ++
Sbjct: 193 RVTIGKIPVMLRSKFCQLHSLNQMQRMKEGKDCQYDQGGYFIINGSEKV----IVAQERM 248
Query: 127 PMSMVRSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRL---GFW------- 176
+ V + F + IR ++ + +L L + GF
Sbjct: 249 ANNQV-NVFHKKPPSKYSWVAEIRSQAENSNKPPQQLLLFLKSRYKSSGPGFGQANHSTS 307
Query: 177 ---------LQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSE 227
L + +P+ I+ +AL +D +I + + C+D P + E
Sbjct: 308 KFGQSIYVSLPMIKEQIPLVILFRALGTISDRQILSRV--CFD--------CPDDPEMGE 357
Query: 228 RVKIILAEVQDLSLTTRLQCLQHIGEH--FQPVIDGLQSESYYAVAETVIRDYIFVHLND 285
++ L E + + T+ + +I + QP I + + E+ +I D
Sbjct: 358 ALRASLEESK--IVDTQEDAMDYIAKRGSAQPYIRENRLTYTKLMLESEFLPHISTLPQD 415
Query: 286 NNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKK 345
K L +M+ KL D+ D + + + G L+ ++ ++ ++
Sbjct: 416 MPKKSFFLGYMVNKLLKAFLGRIDEDDRDYYGKKRLDMAGSLLATNFRQLFRNFTDTMRR 475
Query: 346 LIQDEIENNGKKFDFFNLANIKKVMEKNPSKQ--IGTSIETMLKTGRLATQTGLDLQQRA 403
+++ EI++ GK+ +++ +N KQ I + T L TG D+Q +
Sbjct: 476 ILKHEIDS-GKE----------QIVLQNSIKQDIITRGLRTALATGNWGRDKNGDVQ-KT 523
Query: 404 GYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLL 463
G RL F +S R ++ + G + R+L WG +CP TP+G CGL+
Sbjct: 524 GVAQVLNRLTFASSLSHLRRLNTPIAKTG-KLAKPRQLHNTHWGMICPAETPEGAACGLV 582
Query: 464 NHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDG 523
++ V+ + ++ +L +G + L + + G + + ++G
Sbjct: 583 KNLALMTFVS-----------VGSQPSYLISILEDLG-VDRLDDMNQVGSGRQVRIFVNG 630
Query: 524 RVVG--VIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKF 581
G P I+ ++ R ++ I DL+ + LF
Sbjct: 631 NWFGTHANPDDLIKSMLKLRRTHQIPKEIAIVRDLQNKEIRFYTDSGRVQRPLFIVQNNN 690
Query: 582 VR-PVRNISLPSEESQN---------IELIGPFEQ--VFMEIRCPDGGDGGRRNAFPATH 629
++ ++ISL + N +E + E+ + + D TH
Sbjct: 691 IKLKKKHISLLEKNEYNFDDTIKEGLVEFLDVEEEETAMIAMHLQDLKSKKENRVTTYTH 750
Query: 630 EEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQ 689
EIHP+ +L V A++ P+ DHNQSPRN YQ M KQ MG R D + L PQ
Sbjct: 751 CEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYTSNHSIRMDTLAHVLYYPQ 810
Query: 690 TPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTET 749
P+V T + E P G+NAIVA+ YTGY+ ED++I N+SS+DRG+ ++T
Sbjct: 811 KPLVCTKSMDFLHFKELPAGSNAIVAIACYTGYNQEDSIIFNQSSIDRGIFRSAFFRT-- 868
Query: 750 IDLSDDGNKVDRGQ-KLFRRNKDAK-SLHSVIDSDGLPYVGQMIHPGEPYCS---IYDKT 804
S+ K +R + F++ K + +D DGL I+PG I KT
Sbjct: 869 --YSETQEKDERFEIPDFKKCSGRKHGTYDKLDIDGL------INPGNQVSGDDVIIGKT 920
Query: 805 TN-------SWRTNSRKGSESVF-------------------VDYVAVDMKNSKNLPQKA 838
T + NS +G++ +F +D V + + +
Sbjct: 921 TAIKMNENMNGNANSSQGADPMFFVKSRRDVSTCLKHSETGKIDQVVLTVNEQGE--RFV 978
Query: 839 NIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTI 898
I+ R R P IGDKF+SRHGQKG + DMPF+ G+ PDLIINPHA PSRMTI
Sbjct: 979 KIKMRSERIPQIGDKFASRHGQKGTVGMTYRQEDMPFTR-EGIVPDLIINPHAIPSRMTI 1037
Query: 899 AMLLESVAAK 908
L+E + +K
Sbjct: 1038 GHLIECLGSK 1047
>gi|296421900|ref|XP_002840501.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295636719|emb|CAZ84692.1| unnamed protein product [Tuber melanosporum]
Length = 422
Score = 217 bits (553), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 119/250 (47%), Positives = 163/250 (65%), Gaps = 35/250 (14%)
Query: 662 MAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTG 721
M KQ MG AL++R+D K+Y LQT QTPIVR+ Y++YG+D +P G NA+VAV++YTG
Sbjct: 1 MGKQAMGTPGTALRYRSDNKIYRLQTGQTPIVRSPLYSEYGLDNFPNGMNAVVAVISYTG 60
Query: 722 YDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDS 781
YDM+DAMILNKS+ +RG ++T+ I K ++R + ++D
Sbjct: 61 YDMDDAMILNKSAHERG------FETKFIF-----------GKAYQRIGIRQDWLRIVDM 103
Query: 782 DGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAV---DMKNSKNLPQKA 838
DGLP +GQ++ G+ IY +GSE ++D V + + +SK + Q+
Sbjct: 104 DGLPTIGQLVRDGDA-VFIY------------RGSEDAYIDEVRLLGSEGGDSKPM-QEI 149
Query: 839 NIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTI 898
+I++R R P IGDKFSSRHGQKGVCSQ WP IDMPF+ +GM+PD+IINPHAFPSRMTI
Sbjct: 150 SIKYRIPRPPNIGDKFSSRHGQKGVCSQKWPSIDMPFT-ESGMQPDIIINPHAFPSRMTI 208
Query: 899 AMLLESVAAK 908
M +ES+A K
Sbjct: 209 GMFVESLAGK 218
>gi|224003383|ref|XP_002291363.1| DNA directed RNA polymerase II, second largest subunit
[Thalassiosira pseudonana CCMP1335]
gi|220973139|gb|EED91470.1| DNA directed RNA polymerase II, second largest subunit
[Thalassiosira pseudonana CCMP1335]
Length = 1196
Score = 217 bits (553), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 240/964 (24%), Positives = 393/964 (40%), Gaps = 146/964 (15%)
Query: 28 DEGLSEMFDH-CRQAKISYTGKLMADVEFQYL-------------DAGSPV----VRERF 69
D ++ MF H R ++Y L DV D G PV R+ F
Sbjct: 99 DGTVTNMFPHEARLRNLTYAAPLYVDVTMNEYRVGNDVNVGDPAEDMGEPVSTEEARKEF 158
Query: 70 NFGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMS 129
G P+ML++ C L D +L L E + GGYF++NG E+V I+ ++ +
Sbjct: 159 -LGYVPIMLRSLFCVLSDKDDAQLADLGECIYDQGGYFVINGSEKV----IVAQERMSNN 213
Query: 130 MVRSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLL-----NGSVRLGFWLQGKEYL- 183
V +F+ ++ + R ++ + T LY + G++ Y+
Sbjct: 214 HV-YAFKKKQPSKFSWVIETRSQVENSTRPTSTLYIQMYQKGGKGAIEGNQIRSTLPYIR 272
Query: 184 --LPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSL 241
+PV I+ +AL D +I H+ YD E + P + E I EV
Sbjct: 273 TDIPVVIIFRALGYVADRDIIEHVV--YDLT-DGEMMDLFRPSLEEAFVIQKQEV----- 324
Query: 242 TTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDN----NDKFNLLIFML 297
L IG + + + A +++ + H+ K L + +
Sbjct: 325 -----ALDFIGR--RGSARDVTKDDRIRYAAGILQKEVLPHVGTEEHCETKKGFFLGYAV 377
Query: 298 QKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLK---EKLEDWLRKGKKLIQDEIENN 354
KL + D+ D + + L G L+ + KL +RK + DE
Sbjct: 378 HKLLMCKLGRADEDDRDHFGKKRLDLAGPLLGGLFRVLFRKLTKDVRKHLQRCLDE---- 433
Query: 355 GKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNF 414
GK F NI ++ N I ++ L TG + +AG + RL +
Sbjct: 434 GKHF------NIGAAIKSN---HISDGLKYSLATGNWGDKGN---TSKAGVSQVLNRLTY 481
Query: 415 LRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVAS 474
+S R + + G + R+L WG +CP TP+G+ GL+ +M + +
Sbjct: 482 ASSLSHLRRSNTPLARTG-KQAKPRQLHNSHWGMVCPAETPEGQAVGLVKNMALMAYITT 540
Query: 475 YYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEI 534
+ + T L + LP ++ P + ++G VG+ +
Sbjct: 541 GTSQVPVMEFLEEFSTENLTDI--------LPSVIAE--PNTCKIFVNGNWVGI--HRDP 588
Query: 535 EKVVAHLRRLKVSAASVIPDDLEVGYV---PLSLGGAYPGLYLFTSPPKFVRPV-----R 586
+++V R L+ +I D EV V P S + ++T + RP+ +
Sbjct: 589 KQLVHTFRSLR----RMIDIDAEVSIVRDIPES------EVRIYTDAGRICRPLFIVTDQ 638
Query: 587 NISLPSEESQNIELIGP----------------------FEQVFMEIRCPDGGDG--GRR 622
+++ ++ + P E+ M P D G
Sbjct: 639 ELAIKKHHISQLQGVSPDQKKLTWTDLLMEGLVEYVDTEEEETTMIAMEPKDLDMTVGEP 698
Query: 623 NAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKL 682
+ TH EIHP+ +L + A++ P+ DHNQSPRN YQ M KQ MG + R D
Sbjct: 699 YSTTYTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGIYASNYQVRMDTMA 758
Query: 683 YHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHG 742
+ L PQ P+ T E P+G N +VA++ YTGY+ ED++I+N+S++DRG+
Sbjct: 759 HVLHYPQKPLCTTRAMEFLHFRELPSGVNVVVAIMIYTGYNQEDSLIMNQSAIDRGLFRS 818
Query: 743 QIYQ--TETIDLSDDGNKVDRGQKLFRRNK--DAKSL----HSVIDSDGLPYVGQMIH-- 792
Y+ + S G+ + F R + K + + +D DGL G +
Sbjct: 819 SYYRCYNDQEKSSSVGSVGALNSEFFERPAFDNCKGMKTGDYGKLDDDGLVSPGTRVSGD 878
Query: 793 --------PGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRH 844
P + + + T + S K +E+ VD V + +K + +R R+
Sbjct: 879 DVLIGKTAPMDAIANTPSRYTKRDCSTSMKANENGIVDNVLI--STTKEGYRFTKVRIRN 936
Query: 845 TRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLES 904
R P +GDKF+SRHGQKG + DMPF+ G+ PD+I+NPHA PSRMTIA L+E
Sbjct: 937 VRIPQVGDKFASRHGQKGTIGMTYRQEDMPFT-CEGIVPDIIVNPHAIPSRMTIAQLIEC 995
Query: 905 VAAK 908
+ K
Sbjct: 996 ILGK 999
>gi|119872217|ref|YP_930224.1| DNA-directed RNA polymerase subunit B [Pyrobaculum islandicum DSM
4184]
gi|119673625|gb|ABL87881.1| DNA-directed RNA polymerase, subunit B' [Pyrobaculum islandicum DSM
4184]
Length = 1127
Score = 217 bits (553), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 184/634 (29%), Positives = 292/634 (46%), Gaps = 85/634 (13%)
Query: 311 DNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVM 370
D+ D + N+ + L G L+T + + +L++ K ++ ++ I
Sbjct: 354 DDKDHVANKRVRLVGDLMTQLFRTVFKQFLQELKSQLEK----------YYARGRI---- 399
Query: 371 EKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASF 430
P Q + + + R A TG + + G + +R N++ +S+ R V S
Sbjct: 400 ---PHIQTIVRPDIITERVRQALATGNWVGGKTGVSQILDRTNYMSTLSYLRRVVSSLS- 455
Query: 431 AGLRTT---SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSK 487
RT R L P WG LC V TP+G+ GL+ ++ + + D
Sbjct: 456 ---RTQPHFEARDLHPTQWGRLCAVETPEGQNVGLVKNLALLAEITTGVDE--------- 503
Query: 488 MRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPS-SEIEKVVAHLRRLKV 546
+ ++L +G++P L K G V ++GR++G+ P+ E+ + V LRR
Sbjct: 504 --GEVEQLLYNLGVVPIL-KARDEGIRGA-EVYINGRLIGIHPNPDELARTVRSLRR--- 556
Query: 547 SAASVIPDDLEVG------YVPLSLGGAYPGLYLFTS-----PPKFVRPVRNISLPSEES 595
I D++ + YV G L + + + V VR L ++
Sbjct: 557 --QGKISDEINIAVLNNAVYVNCDGGRIRRPLLVVENGKLKLTKEIVEKVRRGELTWDDL 614
Query: 596 QN---IELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQ 652
IE + E+ I D + TH EI P+ +L VA++ PY +HNQ
Sbjct: 615 VKMGVIEYLDADEEENAYIATDPHDDLSK-----YTHVEIIPSAILGAVASIIPYLEHNQ 669
Query: 653 SPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNA 712
SPRN Y+ MAKQ++G ++ D + + L P+ PIV T G + P G NA
Sbjct: 670 SPRNQYEAAMAKQSLGLPQSNFLYKLDSRGHMLYYPERPIVTTRGLELIGYSKKPAGQNA 729
Query: 713 IVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT-------------ETIDLSDDGNKV 759
+VA+L YTGY+MEDA+ILNK++V+RGM Y+T + I++ D K
Sbjct: 730 VVALLTYTGYNMEDAIILNKAAVERGMFRSVFYRTYETEEQKYPGGEEDKIEVPDSSVKG 789
Query: 760 DRGQKLFRR-NKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNS----RK 814
RG + + ++D + V S +G+ P Y ++ + R +S R+
Sbjct: 790 YRGPEAYSHLDEDGIAPPEVYVSSNEVIIGKT-SPPRFYTTLETERILKERRDSSVAVRR 848
Query: 815 GSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMP 874
G + + VD V + N + +R R R P +GDKF+SRHGQKGV + DMP
Sbjct: 849 GEKGI-VDRVIITESPEGN--RLVKVRLRELRIPELGDKFASRHGQKGVVGMILRHEDMP 905
Query: 875 FSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
F+ G+ PD+I+NPHA PSRMT+ LLES+A K
Sbjct: 906 FTE-EGIVPDIIVNPHALPSRMTVGQLLESIAGK 938
Score = 53.1 bits (126), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 57 YLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVF 116
Y+D P V E F G+ P+M+K++RC+L + V E+ + GGYFI+NG ERV
Sbjct: 117 YVD-DEPYVTETFYIGELPIMVKSKRCNLTRLKPSEYVKKFEDPQDFGGYFIINGSERVI 175
Query: 117 RS 118
S
Sbjct: 176 IS 177
>gi|409083783|gb|EKM84140.1| hypothetical protein AGABI1DRAFT_117576 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 1220
Score = 217 bits (553), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 239/926 (25%), Positives = 389/926 (42%), Gaps = 153/926 (16%)
Query: 71 FGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSM 130
G+ P+ML++ C L+G Q L L E + GGYFI+NG E+ V++ ++ +
Sbjct: 168 IGKVPIMLRSTFCILRGLQDQDLYDLNECPYDSGGYFIINGSEK----VLIAQERMATNH 223
Query: 131 VRSSFRDRREGYTDKAVVIRCVRKDQSSVT---LKLYYLLNGSVRLGFWLQGK-EYL--- 183
V + + A + V K +++ +K+++ N LG ++ Y+
Sbjct: 224 VYVFAKAQPSPINFLAEIRSAVEKGGKTISQFQVKMFH-RNQERSLGNVMKATIPYIKVD 282
Query: 184 LPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTT 243
+P+ +V + L +D +I H+ CYD + + + P + + I EV
Sbjct: 283 IPIWVVFRGLGVISDRDILEHI--CYDMQ-DAQMLEMLKPCIDDGFVIQDREV------- 332
Query: 244 RLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLN----DNNDKFNLLIFMLQK 299
L IG + GL E A+ +++ + H++ + K +M+ +
Sbjct: 333 ---ALDFIGN--RGTTTGLSRERRIRYAQEILQKEMLPHVSMAEGSESKKAYFFGYMIHR 387
Query: 300 LFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFD 359
L D+ D + + L G L+ + + + +Q +E + +
Sbjct: 388 LLLAALERRELDDRDHFGKKRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCVETHKE--- 444
Query: 360 FFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFIS 419
FNLA K + I ++ L TG Q + +AG + R + +S
Sbjct: 445 -FNLALAVK------HQTITNGLKYSLATGNWGDQKK-SMSSKAGVSQVLNRYTYASTLS 496
Query: 420 FFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMT--STCRVASYYD 477
R + G + R+L WG +CP TP+G+ CGL+ ++ S V SY
Sbjct: 497 HLRRCNTPLGREG-KIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMSCISVGSY-- 553
Query: 478 SRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGV--IPSSEIE 535
++ L G+ SL + S P V ++G +GV P++ ++
Sbjct: 554 -----------SAPVIEFLEEWGL-ESLEENAHSTSPCT-KVFVNGVWMGVHRDPANLVK 600
Query: 536 KVVAHLRRLKVS-AASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRP---------- 584
+ R+ +S SV+ D E L ++T + RP
Sbjct: 601 TIKKLRRKDDISPEVSVVRDIRE------------KELRIYTDAGRVCRPLFIVENQQLL 648
Query: 585 -----VRNISLPSEESQN------------IELIGPFEQVFMEIRC-------------- 613
+R ++ S++ N IEL+ E+ + I
Sbjct: 649 LGKRHIRWLNSGSDDEGNEYKWEQLIKGGVIELLDAEEEETVMISMTPEDLENSRLQAAG 708
Query: 614 --PDGGDG-----GRRNAFPATHEEIH----PTGMLSVVANLTPYSDHNQSPRNMYQCQM 662
P DG R A H H P+ +L + A++ P+ DHNQSPRN YQ M
Sbjct: 709 VDPHANDGDFDPAARLKAGTHAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAM 768
Query: 663 AKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGY 722
AKQ MG + R D L PQ P+ T + E P G NAIVA+L Y+GY
Sbjct: 769 AKQAMGIYLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCYSGY 828
Query: 723 DMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAK-----SLHS 777
+ ED++I+N+SS+DRG+ IY +DL + + + + ++ + +D +
Sbjct: 829 NQEDSVIMNQSSIDRGLFRS-IYYRSYMDL-EKKSGIQQLEEFEKPTRDTTLRMKHGTYD 886
Query: 778 VIDSDGLPYVGQ-------MIHPGEPYCSIYDKTTNSWRTNSR-------KGSESVFVDY 823
++ DGL G +I P ++ RT++R K +E VD
Sbjct: 887 KLEDDGLIAPGTGVRGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTEIGIVDQ 946
Query: 824 VAVDMKNSKNLPQK-ANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMR 882
V + NS+ QK +R R TR P IGDKF+SRHGQKG + DMPF+ G+
Sbjct: 947 VLI-TTNSEG--QKFVKVRVRATRIPQIGDKFASRHGQKGTVGITYRQEDMPFTA-EGIV 1002
Query: 883 PDLIINPHAFPSRMTIAMLLESVAAK 908
PDLIINPHA PSRMTI L+E + +K
Sbjct: 1003 PDLIINPHAIPSRMTIGHLVECLLSK 1028
>gi|339906100|ref|YP_004732897.1| hypothetical protein WIV_gp114 [Wiseana iridescent virus]
gi|308051971|gb|ADO00458.1| hypothetical protein [Wiseana iridescent virus]
Length = 1127
Score = 217 bits (552), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 249/1002 (24%), Positives = 425/1002 (42%), Gaps = 185/1002 (18%)
Query: 8 DFEPLRELVRHHIESFDYMLDEGLSEMFDH------------------------------ 37
DF LV+H I++F++ +GL + ++
Sbjct: 27 DFFKTNGLVKHQIDTFNWFTSKGLKNIINNEPSIKYESNKYDNYTLKFSNICVEPPTIID 86
Query: 38 ------------CRQAKISYTGKLMADV--EFQYLDAGSPVVRERFN--FGQFPVMLKTR 81
R +SYTG + D+ + + P + E++ + P+ML +
Sbjct: 87 NDRTIRPLYPQEARNKDLSYTGNVCVDIIETIESNEGKPPQINEQYRVPIAKIPIMLLSD 146
Query: 82 RCHLQGADSQKLVSLKEEA-AEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRRE 140
CHL+ Q+ SL + A+ GGYFI+NG ERV S + N P+ V+S+
Sbjct: 147 TCHLRQFTPQENESLNGHSEADQGGYFIINGKERVLISQVRKAYNKPLCFVKST------ 200
Query: 141 GYTDKAVVIRCVRKD-------QSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKAL 193
+ K V+ C + +SV +K+ + + + L+GK +PVGI+ K+L
Sbjct: 201 --SQKEDVLICEMRSMCDETFHSTSVQVKM---IKNKIVVSLKLKGKVVDIPVGIIFKSL 255
Query: 194 VDTNDLEIFNHL---------------TCCYDEKYKKEKGAVGSPLV---SERVKIILAE 235
D + F+HL C++E + +GA S S+ ++
Sbjct: 256 GFHPDTQ-FHHLFDLPKKYNRYLETIKNNCFEE-FSTTEGAASSDESNDESDSEDDLVKV 313
Query: 236 VQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDNNDK---FNL 292
+++S+T + + + E Q +D +F HL + K +L
Sbjct: 314 FRNVSVTADKEGILTM-EDIQKSLDM----------------DLFPHLGITSTKKQRIDL 356
Query: 293 LIFMLQK-LFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEI 351
LI M++K L +L+ V DN D ++ + G L Y +L +K +K +I
Sbjct: 357 LILMVKKYLLTLMGDLPV-DNRDDYNHKRVETAGELY--YFLFRL--LYKKFQKTCVAQI 411
Query: 352 ENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAER 411
+N +K D N + I T I +G Q ++ V +
Sbjct: 412 KN--RKPDISNFLR---------TSGITTGILYSFSSGYWGVQRNAYIRTGVSQVVNP-K 459
Query: 412 LNFLRFISFFRAVHRGASFAG--LRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTST 469
++ L S R V S G +T+ +R++ P S +CPV TP+G+ G + +M+
Sbjct: 460 VSLLANYSSLRRVVIPESKDGKEAKTSEIRQIHPSSSFLICPVETPEGKGVGTVLNMSIF 519
Query: 470 CRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVI 529
C V + + + + IL K K L++L++G
Sbjct: 520 CSVTTGISTCEIMDSIDHFQDLIL------------CKCRKPNKSNCLTILINGS----- 562
Query: 530 PSSEI--EKVVAHLRRLKVSAASVIPDD-LEVGYVPLSLGGAYPGLYLFTSPPKFVRPVR 586
P S++ + +L + + S++ + L++ + +F+ P + +RPV
Sbjct: 563 PFSKLGHANTINNLNFMGDKSISIVVNKHLKI-------------IEIFSDPGRLIRPVF 609
Query: 587 NIS---------LPS----EESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIH 633
+++ +PS E+Q I+ + +V + D E+H
Sbjct: 610 DLNKIIKKSGELIPSFNWFLENQLIKYVD-INEVITNCVAIEPLDIVENPKSKYNLMELH 668
Query: 634 PTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIV 693
P GM +VA + P+SD QS RN + M KQ +GF V + + + L PQ P+V
Sbjct: 669 PIGMFGIVAGIIPFSDRTQSARNCFYTSMVKQAIGF-VPCHNLKTETVSHTLNYPQKPLV 727
Query: 694 RTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLS 753
T+ G++EYP G NAIVA+ YTGY+ ED++ILNK+S++RG+ Y T T + +
Sbjct: 728 TTDIAEFNGLNEYPNGINAIVAIACYTGYNQEDSVILNKASIERGLFGTTTYNTFTAEET 787
Query: 754 DDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCS-IYDKTTNSWRT-- 810
+G +R K + + ++ G+ + Q + G+ I K N
Sbjct: 788 KNGIVEERIDIPIDSVKVRDNNYGLLSDSGIVRLRQQVKKGDVLIGRITIKNKNEQEKVV 847
Query: 811 -NS---RKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQ 866
NS ++G E +VD + ++ + +K I R P IGDKF S QKG C
Sbjct: 848 DNSIVVQQGEEG-YVDRITDNIVDG---CRKVKIVIGQLRIPEIGDKFCSGMAQKGTCGM 903
Query: 867 LWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
++ DMPF+ +GM PD+IINP+ PSRMTI ++ +V K
Sbjct: 904 IYAQEDMPFTQ-SGMTPDIIINPNCIPSRMTINQIIATVMGK 944
>gi|71028664|ref|XP_763975.1| DNA-directed RNA polymerase II subunit [Theileria parva strain
Muguga]
gi|68350929|gb|EAN31692.1| DNA-directed RNA polymerase II subunit, putative [Theileria parva]
Length = 1190
Score = 217 bits (552), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 230/928 (24%), Positives = 389/928 (41%), Gaps = 132/928 (14%)
Query: 39 RQAKISYTGKLMADVEFQ-YLDAGSPVVRE------RFNFGQFPVMLKTRRCHLQGADSQ 91
R ++Y ++ D+E + +++ +V+ R + P+M K+ C +G + +
Sbjct: 150 RLRNLTYASQVYIDIEQETFVNENGKLVQTDSTVYPRVPLCRMPMMHKSSYCWTRGLNDR 209
Query: 92 KLVSLKEEAAEMGGYFILNGLERVFRS---------VILPKQNYPMSMVRS--SFRDRRE 140
L + E + GGYF++NG ERV + + K+N S V S D +
Sbjct: 210 DLSDIGECVFDQGGYFVVNGGERVLIAQERMANNFVYVFNKKNSKYSAVAQLRSQPDFIQ 269
Query: 141 GYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLE 200
G T ++I + ++ + L Y+ + +PV I+ +AL +D +
Sbjct: 270 GVTSLTIMISNSQLTKNKMVAVLPYIRSD--------------IPVPILFRALGCISDRD 315
Query: 201 IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQ--PV 258
I + V D S T L ++ E + P
Sbjct: 316 ILQRI------------------------------VYDFSDTQMLSLMRASLEECKRGPT 345
Query: 259 IDGLQSESYYAVAETVIRDY---IFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDS 315
+ L E ET+ R + + + + K L +M+ +L D+ +
Sbjct: 346 VGALHEERLNFAKETLRRHFLPHVGTEVGSESKKCFYLGYMIHRLLLNQLGRINEDDREH 405
Query: 316 LQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPS 375
+ + L G L+ + ++ ++++I++ G+ FD IK
Sbjct: 406 FGKKRLDLAGSLMASSFGTLFRKLAKDVERFLKNQIDS-GRSFDV--AGAIKSC------ 456
Query: 376 KQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRT 435
QI ++ L TG ++ R G + RL F ++S R ++ G +
Sbjct: 457 SQITQGLQYQLLTGNWGRDKDGNVV-RTGVSQVLNRLTFASYLSHLRRLNTPLGREG-KM 514
Query: 436 TSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRV 495
R+L WG +CP TP+G+ GL+ ++ C ++ + ++IL
Sbjct: 515 AKPRQLHNTHWGMICPAETPEGQAVGLVKNLALMCYIS-----------VGSLSSTILDF 563
Query: 496 LIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVI--PSSEIEKVVAHLRRLKVSAASVIP 553
L+ GM SL ++ + + L+G VGV P S + ++ R+ +S+ + I
Sbjct: 564 LLEFGM-DSLDEISPILIKDRVKIFLNGTWVGVFNQPDSLVNVLLELRRKGNISSETSIV 622
Query: 554 DDLEVGYVPL--SLGGAYPGLYLFTS-----PPKFVRPVRNISLPSE---ESQNIELIG- 602
D+ + + G + LY+ + K + N L E+ +E I
Sbjct: 623 RDIMSNEIKIFTDAGRSMRPLYIVENNRLLITKKHADMIENRQLTWSGLLETGVVEYIDC 682
Query: 603 PFEQVFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQM 662
E++ M PD TH EIHP+ +L V A++ P+ D NQSPRN YQ M
Sbjct: 683 EEEEICMIAMFPDDLVNNNNYCNSYTHCEIHPSMILGVCASIIPFPDQNQSPRNTYQSAM 742
Query: 663 AKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGY 722
KQ MG R D + L PQ P+V T + E P G N+IVA++ YTGY
Sbjct: 743 GKQAMGVYSTNYNLRMDTLSHVLYYPQKPLVCTRSMEFLRFRELPAGINSIVAIMCYTGY 802
Query: 723 DMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKV--------DRGQKLFRRNKDAKS 774
+ ED++I+N+SS+DRG+ +T + + G+ V G L + D
Sbjct: 803 NQEDSLIMNQSSIDRGLFRSVFNRTYSSEEKYLGSTVIESFTKPTASGNFLNLKRGD--- 859
Query: 775 LHSVIDSDGLPYVGQ-------MIHPGEPYCSIYDKTTNSWRTNSR-------KGSESVF 820
+S +D+DGL G +I P + + + N R + +E+
Sbjct: 860 -YSKLDNDGLVEPGSRVLGDDIIIGRSSPVEADPNNPQYTSEMNLRMDCSCCLRPNENGV 918
Query: 821 VDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTG 880
VD V + + N + ++ R R P IGDKF+SRHGQKG + D+PF+ G
Sbjct: 919 VDNVLLTVNNKG--CKFTKVKVRSIRVPQIGDKFASRHGQKGTIGMTFRMEDLPFT-CDG 975
Query: 881 MRPDLIINPHAFPSRMTIAMLLESVAAK 908
+ PD+I+NPHA PSRMTI L+E + K
Sbjct: 976 IVPDIIMNPHAVPSRMTIGHLIECLLGK 1003
>gi|426201159|gb|EKV51082.1| hypothetical protein AGABI2DRAFT_113824 [Agaricus bisporus var.
bisporus H97]
Length = 1183
Score = 217 bits (552), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 239/926 (25%), Positives = 389/926 (42%), Gaps = 153/926 (16%)
Query: 71 FGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSM 130
G+ P+ML++ C L+G Q L L E + GGYFI+NG E+ V++ ++ +
Sbjct: 174 IGKVPIMLRSTFCILRGLQDQDLYDLNECPYDSGGYFIINGSEK----VLIAQERMATNH 229
Query: 131 VRSSFRDRREGYTDKAVVIRCVRKDQSSVT---LKLYYLLNGSVRLGFWLQGK-EYL--- 183
V + + A + V K +++ +K+++ N LG ++ Y+
Sbjct: 230 VYVFAKAQPSPINFLAEIRSAVEKGGKTISQFQVKMFH-RNQERSLGNVMKATIPYIKVD 288
Query: 184 LPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTT 243
+P+ +V + L +D +I H+ CYD + + + P + + I EV
Sbjct: 289 IPIWVVFRGLGVISDRDILEHI--CYDMQ-DAQMLEMLKPCIDDGFVIQDREV------- 338
Query: 244 RLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLN----DNNDKFNLLIFMLQK 299
L IG + GL E A+ +++ + H++ + K +M+ +
Sbjct: 339 ---ALDFIGN--RGTTTGLSRERRIRYAQEILQKEMLPHVSMAEGSESKKAYFFGYMIHR 393
Query: 300 LFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFD 359
L D+ D + + L G L+ + + + +Q +E + +
Sbjct: 394 LLLAALERRELDDRDHFGKKRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCVETHKE--- 450
Query: 360 FFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFIS 419
FNLA K + I ++ L TG Q + +AG + R + +S
Sbjct: 451 -FNLALAVK------HQTITNGLKYSLATGNWGDQKK-SMSSKAGVSQVLNRYTYASTLS 502
Query: 420 FFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMT--STCRVASYYD 477
R + G + R+L WG +CP TP+G+ CGL+ ++ S V SY
Sbjct: 503 HLRRCNTPLGREG-KIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMSCISVGSY-- 559
Query: 478 SRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGV--IPSSEIE 535
++ L G+ SL + S P V ++G +GV P++ ++
Sbjct: 560 -----------SAPVIEFLEEWGL-ESLEENAHSTSPCT-KVFVNGVWMGVHRDPANLVK 606
Query: 536 KVVAHLRRLKVS-AASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRP---------- 584
+ R+ +S SV+ D E L ++T + RP
Sbjct: 607 TIKKLRRKDDISPEVSVVRDIRE------------KELRIYTDAGRVCRPLFIVENQQLL 654
Query: 585 -----VRNISLPSEESQN------------IELIGPFEQVFMEIRC-------------- 613
+R ++ S++ N IEL+ E+ + I
Sbjct: 655 LGKRHIRWLNSGSDDEGNEYKWEQLIKGGVIELLDAEEEETVMISMTPEDLENSRLQAAG 714
Query: 614 --PDGGDG-----GRRNAFPATHEEIH----PTGMLSVVANLTPYSDHNQSPRNMYQCQM 662
P DG R A H H P+ +L + A++ P+ DHNQSPRN YQ M
Sbjct: 715 VDPHANDGDFDPAARLKAGTHAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAM 774
Query: 663 AKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGY 722
AKQ MG + R D L PQ P+ T + E P G NAIVA+L Y+GY
Sbjct: 775 AKQAMGIYLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCYSGY 834
Query: 723 DMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAK-----SLHS 777
+ ED++I+N+SS+DRG+ IY +DL + + + + ++ + +D +
Sbjct: 835 NQEDSVIMNQSSIDRGLFRS-IYYRSYMDL-EKKSGIQQLEEFEKPTRDTTLRMKHGTYD 892
Query: 778 VIDSDGLPYVGQ-------MIHPGEPYCSIYDKTTNSWRTNSR-------KGSESVFVDY 823
++ DGL G +I P ++ RT++R K +E VD
Sbjct: 893 KLEDDGLIAPGTGVRGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTEIGIVDQ 952
Query: 824 VAVDMKNSKNLPQK-ANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMR 882
V + NS+ QK +R R TR P IGDKF+SRHGQKG + DMPF+ G+
Sbjct: 953 VLI-TTNSEG--QKFVKVRVRATRIPQIGDKFASRHGQKGTVGITYRQEDMPFTA-EGIV 1008
Query: 883 PDLIINPHAFPSRMTIAMLLESVAAK 908
PDLIINPHA PSRMTI L+E + +K
Sbjct: 1009 PDLIINPHAIPSRMTIGHLVECLLSK 1034
>gi|353243888|emb|CCA75371.1| probable DNA-dependent RNA polymerase II RPB140 (RPB2)
[Piriformospora indica DSM 11827]
Length = 1223
Score = 216 bits (550), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 241/928 (25%), Positives = 383/928 (41%), Gaps = 156/928 (16%)
Query: 68 RFNFGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRS--------- 118
R + P+ML++ C L + L E + GGYFI++G E+V +
Sbjct: 165 RLPLAKIPIMLRSDICALYTIPDPEKYDLNECPDDPGGYFIISGQEKVLIAQERMAGNHV 224
Query: 119 -VILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCV----RKDQSSVTLKLYY-----LLN 168
V Q P+S + IR V K SS +KL++
Sbjct: 225 YVFAKGQPSPISFLAE---------------IRSVPERGGKLLSSFQVKLFHKGIEKQSG 269
Query: 169 GSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSER 228
G++R + +P+ I+ +A+ D +I H+ CYD + + + P + E
Sbjct: 270 GAIRASVPYIKTD--VPIWILFRAMGVLADRDILEHI--CYD-GHDDQMLEMLKPCIDEG 324
Query: 229 VKIILAEVQDLSLTTRLQCLQHIGEHFQ-PVIDGLQSESYYAVAETVIRDYIFVHLN--D 285
+ E+ L IG P I E A+ +I+ + H++ +
Sbjct: 325 FVVQHREI----------ALDFIGRRGNTPTI---SRERRIRYAQEIIQKELLPHISMEE 371
Query: 286 NND--KFNLLIFMLQKLF-SLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRK 342
N+ K + +M+ +L + +D + D D + + L G L++ + ++
Sbjct: 372 GNEARKAYFVGYMIHRLLLAALDRREIDDR-DHFGKKRLDLAGPLLSTLFRMLFRKVVKD 430
Query: 343 GKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQR 402
+ +Q +E+ GK FD + I ++ L TG Q + +
Sbjct: 431 VYRYLQKCVES-GKAFDVGRAIKLGT---------ISNGLKYSLATGNWGDQQNA-MSSK 479
Query: 403 AGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGL 462
AG + R + +S R + G + R+L WG +CP TP+G+ CGL
Sbjct: 480 AGVSQVLNRYTYASTLSHLRRTNTPLGREG-KIAKPRQLHNTHWGMVCPAETPEGQACGL 538
Query: 463 LNHMT--STCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVL 520
+ +++ + V SY G D M +L + +S P+ V
Sbjct: 539 VKNLSLMACISVGSYSAPVGEFLDEWGME--------------ALEENAQSDRPST-KVF 583
Query: 521 LDGRVVGV-IPSSEIEKVVAHLRRLKV--SAASVIPDDLEVGY-VPLSLGGAYPGLYLFT 576
L+G +GV +++ + HLRR + SV+ D E + G L++
Sbjct: 584 LNGVWMGVHREPTQLLNTLKHLRRTEAIHPEVSVVRDIREKELRIYTDSGRVCRPLFVVE 643
Query: 577 SPPKFVRPVRNISLPSEESQN-------------IELIGPFEQVFMEIRCPDGGDGGRRN 623
+ P + L E+ +EL+ E+ + I C D R+
Sbjct: 644 KDKLLITPEQVARLRDEKDDPAGYRWDNLFKDGVVELLDAEEEETVMI-CMSPEDLDARS 702
Query: 624 AFPATHE----------------------EIHPTGMLSVVANLTPYSDHNQSPRNMYQCQ 661
+ H EIHP+ +L V A++ P+ DHNQSPRN YQ
Sbjct: 703 SGQVYHTEDMYDPSSRVKTIIKAGSYSHCEIHPSMILGVCASIVPFPDHNQSPRNTYQSA 762
Query: 662 MAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTG 721
M KQ MG S+ R D L PQ P+ T + P G NAIVA+L Y+G
Sbjct: 763 MGKQAMGISLSNFLVRMDTMANILYYPQKPLATTRALEWLKFRDLPAGQNAIVAILCYSG 822
Query: 722 YDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKV----------DRGQKLFRRNKD 771
Y+ ED++I+N+SS+DRG+ IY +D+ ++ D ++ N D
Sbjct: 823 YNQEDSVIMNQSSIDRGLFRS-IYYRSYMDMEKTAGQITLEEFEKPSRDTTLRMKHGNYD 881
Query: 772 AKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSR---------KGSESVFVD 822
+I + G+ +G+ I G+ D RT+ K +ES +D
Sbjct: 882 KLDDDGLI-APGMNVIGEDIIIGKTAPLPPDSQELGQRTDRHTRRDVSTPLKSTESGIID 940
Query: 823 YV--AVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTG 880
+V VD + SK + IR R TR P +GDKF+SRHGQKG L+ DMPFS G
Sbjct: 941 HVLITVDGEGSKFV----KIRVRSTRIPQVGDKFASRHGQKGTIGILYRQEDMPFSA-DG 995
Query: 881 MRPDLIINPHAFPSRMTIAMLLESVAAK 908
+ PDLIINPHA PSRMTI L+E + +K
Sbjct: 996 IVPDLIINPHAIPSRMTIGHLVECLLSK 1023
>gi|344288485|ref|XP_003415980.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like
[Loxodonta africana]
Length = 1010
Score = 216 bits (550), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 209/768 (27%), Positives = 331/768 (43%), Gaps = 89/768 (11%)
Query: 184 LPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTT 243
+P+ IV +AL +D +I H+ +++ P + E VK L E +
Sbjct: 103 VPIIIVFRALGFVSDRDILEHIIYDFED-----------PEMMEMVKPSLDEA--FVIQE 149
Query: 244 RLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQK 299
+ L IG + G+ E A+ V++ + H+ ++ K L +M+ +
Sbjct: 150 QNVALNFIGS--RGAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHR 207
Query: 300 LFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFD 359
L D+ D N+ + L G L+ + ++ L++ + Q I + GK F+
Sbjct: 208 LLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFI-DRGKDFN 266
Query: 360 FFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFIS 419
LA IK ++ I ++ L TG Q Q RAG + RL F +S
Sbjct: 267 L-ELA-IK-------TRIISDGLKYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLS 316
Query: 420 FFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSR 479
R ++ G + R+L WG +CP TP+G GL+ ++ ++
Sbjct: 317 HLRRLNSPIGRDG-KLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYIS------ 369
Query: 480 GNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVA 539
+ IL L M +L ++ + + ++G VG+ + E+++
Sbjct: 370 -----VGSQPSPILEFLEEWSM-ENLEEISPAAIADATKIFVNGCWVGI--HKDPEQLMN 421
Query: 540 HLRRLK------VSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSE 593
LR+L+ VS S+I D E + G L K + R+I E
Sbjct: 422 TLRKLRRQMDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKE 481
Query: 594 ESQN------------IELIGPFEQ--VFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLS 639
N +E I E+ V + + D + TH EIHP+ +L
Sbjct: 482 REYNNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEKEVAYCSTYTHCEIHPSMILG 541
Query: 640 VVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYT 699
V A++ P+ DHNQSPRN YQ M KQ MG + R D + L PQ P+V T +
Sbjct: 542 VCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSME 601
Query: 700 KYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKV 759
E P G N+IVA+ +YTGY+ ED++I+N+S+VDRG Y++ S G
Sbjct: 602 YLRFRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKG--F 659
Query: 760 DRGQKLFRRNKDA-----KSLHSVIDSDGLPYVGQMIHPGE----PYCSIYDKTTNSWRT 810
D+ + + ++ +++ +D DGL G + + ++ + T
Sbjct: 660 DQEEVFEKPTRETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELEST 719
Query: 811 NSR----------KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQ 860
N R + SE+ VD V V + + IR R R P IGDKF+SRHGQ
Sbjct: 720 NRRYTKRDCSTFLRTSETGIVDQVMVTLNQEGY--KFCKIRVRSVRIPQIGDKFASRHGQ 777
Query: 861 KGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
KG C + DMPF+ G+ PD+IINPHA PSRMTI L+E + K
Sbjct: 778 KGTCGIQYRQEDMPFT-CEGITPDIIINPHAIPSRMTIGHLIECLQGK 824
>gi|409051856|gb|EKM61332.1| hypothetical protein PHACADRAFT_247866 [Phanerochaete carnosa
HHB-10118-sp]
Length = 1237
Score = 215 bits (548), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 244/954 (25%), Positives = 403/954 (42%), Gaps = 142/954 (14%)
Query: 39 RQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKE 98
R+ S TG L+ + E SP + G+ P+ML++ C L ++L L E
Sbjct: 150 REDPDSTTGDLVWEQEHD----ESPEDTRKVWIGKVPIMLRSTFCILNKLTQEELFDLNE 205
Query: 99 EAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSS 158
+ GGYFI+NG E+ V++ ++ + V + + + A + V K +
Sbjct: 206 CPYDSGGYFIINGSEK----VLIAQERMATNHVYVFAKAQPSPISFLAEIRSAVEKGGKT 261
Query: 159 VT---LKLYYLLNGSVRLGFWLQGK-EYL---LPVGIVLKALVDTNDLEIFNHLTCCYD- 210
++ +KLY+ N LG ++ Y+ +P+ +V +AL +D +I H+ CYD
Sbjct: 262 ISQFQVKLYH-RNQERSLGNVMKATIPYIKVDIPIWVVFRALGVISDRDILEHI--CYDM 318
Query: 211 ---EKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESY 267
+ + K + V + +I L + + TT GL E
Sbjct: 319 QDAQMLEMLKPCIDDGFVIQDREIALDFIGNRGTTT-----------------GLNRERR 361
Query: 268 YAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHL 327
A+ +++ + H++ K +M+ +L D+ D + + L G L
Sbjct: 362 LRYAQEILQKEMLPHIH----KAYFFGYMIHRLLLAALERRDLDDRDHFGKKRLDLAGPL 417
Query: 328 ITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLK 387
+ + R + +Q +E + + FNL+ K I ++ L
Sbjct: 418 LANLFRMLFRKLTRDVYRYLQKCVETHKE----FNLSLAVK------HNTITNGLKYSLA 467
Query: 388 TGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWG 447
TG Q + +AG + R + +S R + G + R+L WG
Sbjct: 468 TGNWGDQKK-SMSAKAGVSQVLNRYTYASTLSHLRRCNTPLGREG-KIAKPRQLHNTHWG 525
Query: 448 FLCPVHTPDGEPCGLLNHM---------TSTCRVASYYDSRG--NIRDFSKMRTSILRVL 496
+CP TP+G+ CGL+ ++ + + V + + G ++ + + T +V
Sbjct: 526 MVCPAETPEGQACGLVKNLSLMACISVGSLSAPVIEFLEEWGLESLEENAHSTTPCTKVF 585
Query: 497 I-GVGM---------IPSLPKLVKSG--PPAVLSVLLD------------GRVVGVIPSS 532
+ GV M + ++ KL + P V SV+ D GRV P
Sbjct: 586 VNGVWMGVHRDPANLVKTIKKLRRKDDISPEV-SVVRDIRERELRLYTDAGRVCR--PLF 642
Query: 533 EIEKVVAHLRRLKVS-AASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRN--IS 589
+E LR+ + AS +P + G L G Y P ++ V++ I
Sbjct: 643 IVENNQLTLRKKHIEWIASGVPQYDDAGSRLLKEDGTYD-----NQPYEWSNLVKDGVIE 697
Query: 590 LPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNA-----------FPATHEEIH----P 634
L E + +I + R G R+ F H H P
Sbjct: 698 LLDAEEEETVMICMTPEDLENARLQQAGIDSHRDESEFDPSARLKNFSMAHLWTHCEIHP 757
Query: 635 TGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVR 694
+ +L V A++ P+ DHNQSPRN YQ M KQ MG + R D L PQ P+
Sbjct: 758 SMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLAT 817
Query: 695 TNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSD 754
T + E P G NAIVA+L Y+GY+ ED++I+N+SS+DRG+ Y++ +DL +
Sbjct: 818 TRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSMYYRS-YMDL-E 875
Query: 755 DGNKVDRGQKLFRRNKDAK-----SLHSVIDSDGLPYVGQ-------MIHPGEPYCSIYD 802
+ V + ++ + +D + ++ DGL G +I P +
Sbjct: 876 KKSGVQQLEEFEKPTRDTTLRMKHGTYDKLEDDGLIAPGTGVNGEDIIIGKTAPIPPDSE 935
Query: 803 KTTNSWRTNSR-------KGSESVFVDYVAVDMKNSKNLPQK-ANIRFRHTRNPIIGDKF 854
+ RT+++ K +ES +D V + N++ QK IR R TR P IGDKF
Sbjct: 936 ELGQRTRTHTKRDVSTPLKSTESGIIDQVLI-TTNAEG--QKFVKIRVRSTRIPQIGDKF 992
Query: 855 SSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
+SRHGQKG + DMPF+ G+ PD++INPHA PSRMTI L+E + +K
Sbjct: 993 ASRHGQKGTIGITYRQEDMPFTA-EGITPDIVINPHAIPSRMTIGHLVECLLSK 1045
>gi|159487647|ref|XP_001701834.1| DNA-directed RNA polymerase II, 135 kDa polypeptide [Chlamydomonas
reinhardtii]
gi|158281053|gb|EDP06809.1| DNA-directed RNA polymerase II, 135 kDa polypeptide [Chlamydomonas
reinhardtii]
Length = 1634
Score = 215 bits (547), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 247/976 (25%), Positives = 397/976 (40%), Gaps = 184/976 (18%)
Query: 38 CRQAKISYTGKLMADV-EFQYLDAGSPVVRER------FNFGQFPVMLKTRRCHLQGADS 90
R ++Y L DV + +Y G V E+ + G+ P+MLK+ RC+L A +
Sbjct: 113 ARLRNLTYCAPLYVDVTKTEYTRVGENEVEEKTETFSHVHLGKVPIMLKSERCNLHEAST 172
Query: 91 -QKLVSLKEE----------------------------------------AAEMGGYFIL 109
Q+ +L E A GGYF++
Sbjct: 173 EQEATNLGESYFGAAACLIVGTCPGIAHQLAPPLTPLTPALAAPTRSASSAHPQGGYFVI 232
Query: 110 NGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKA---VVIRCVRKDQSSVTLKLYYL 166
NG E+V ++ ++ + V + + YT A V+ + SS+++ +
Sbjct: 233 NGSEKV----LIAQERMANNHVYVFKKSQPSKYTFCAEIRSVVEGSTRSASSMSIMMLAK 288
Query: 167 LNGSVRLGFWLQGKEYL---LPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSP 223
+ G Y+ P+ I+ +AL +D +I H+ D P
Sbjct: 289 GKKAGAAGVIRAQIPYIRAEFPIFILFRALGFVSDRDILEHIVYDLD----------ADP 338
Query: 224 LVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHL 283
+ E ++ + E Q++ T+ + L ++G+ + + G E ET R FV
Sbjct: 339 AMLEALRSSVEEAQEVQ--TQEEALNYLGK--RGTVTGASKE----FMET--RKGYFVG- 387
Query: 284 NDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLK---EKLEDWL 340
+M+ +L + D+ D N+ + L G L+ + KL L
Sbjct: 388 -----------YMVHRLMLVALGRRPEDDRDHYANKRLDLGGPLMAGLFRLLFRKLCKEL 436
Query: 341 RKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQ 400
R + + D GK+ + + N K I ++ L TG Q +
Sbjct: 437 RMQAQRMVDA----GKEINVISAIN---------DKVITRGLKYSLATGNWGEQGKQGI- 482
Query: 401 QRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPC 460
RAG + RL + +S R V+ G + R+L WG CP TP+G+
Sbjct: 483 -RAGVSQVLARLTYASTLSHLRRVNSPIGREG-KLAKPRQLHNSLWGIFCPAETPEGQAV 540
Query: 461 GLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVL 520
GL+ +M C + S + + T +L ++ + A V
Sbjct: 541 GLVKNMALMCYITVGTPSLPVVAHLEEFNTE------------ALDEVTPADIAASTKVF 588
Query: 521 LDGRVVGVI--PSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSP 578
++G +G+ P++ I+ + A R++ S I D G L +FT
Sbjct: 589 INGVWLGIQRDPTALIKNLRAMRRQVAFSTEVAIIYD-----------GPLKELRIFTDY 637
Query: 579 PKFVRPV----------------RNIS-LPSEESQN---------IELIGPFEQ----VF 608
+ RP+ R IS LP E+ +E I E+ +
Sbjct: 638 GRASRPLYICEDNRLLVSKHHIRRLISPLPDEDEYAWPQLVQDGLVEYIDAEEEETTMIA 697
Query: 609 MEIR-CPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTM 667
M I + + G TH EIHP +L V A++ P+ DHNQSPRN YQ M KQ M
Sbjct: 698 MTIADLRNAREAGAATGTTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAM 757
Query: 668 GFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDA 727
G + R D + + L PQ P+V T E P G NAIVA++ Y+GY+ ED+
Sbjct: 758 GMYATNYQTRMDTQGFVLYYPQKPLVCTRAMDYLKFRELPAGINAIVAIMCYSGYNQEDS 817
Query: 728 MILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSV---IDSDGL 784
++LN SS+DRG Y+ + G+ + + +K H +D+DGL
Sbjct: 818 LMLNGSSIDRGFHRSIFYRAYKEEEKKAGSMAREEIEAPDPSVTSKMKHGTYDKLDADGL 877
Query: 785 PYVGQMIHPGEPYC----SIYDKTTNSWRTNSRK-------GSESVFVDYVAVDMKNSKN 833
G + + C ++ D T + + ++K G E+ +D V M + +
Sbjct: 878 CPPGTRVSGEDIICGKTVTLPDDPTGAVQRFTKKDASLALRGHEAGVIDQV---MLTTND 934
Query: 834 LPQK-ANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAF 892
QK IR R P +GDKF+SRHGQKG C + DMPF+ G+ PD+I+NPHA
Sbjct: 935 EGQKFVKIRVRTICIPQVGDKFASRHGQKGTCGITYTMEDMPFTA-EGIVPDIIVNPHAI 993
Query: 893 PSRMTIAMLLESVAAK 908
PSRMTI L+E++ +K
Sbjct: 994 PSRMTIGHLVEALMSK 1009
>gi|109287887|ref|YP_654581.1| hypothetical protein MIV009R [Invertebrate iridescent virus 3]
gi|123868018|sp|Q197F1.1|RPB2_IIV3 RecName: Full=Probable DNA-directed RNA polymerase II subunit RPB2
homolog
gi|106073510|gb|ABF82039.1| hypothetical protein MIV009R [Aedes taeniorhynchus iridescent
virus]
Length = 1140
Score = 215 bits (547), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 248/1009 (24%), Positives = 407/1009 (40%), Gaps = 182/1009 (18%)
Query: 7 ADFEPLRELVRHHIESFDYMLDEGLSEMFDH----------------------------- 37
AD+ LV+H IE+F++ + +GL + ++
Sbjct: 24 ADYFKTNGLVKHQIETFNHFISKGLKTIINNESSIKYQSHDNYSLKFTNIYVEYPSIIDD 83
Query: 38 -----------CRQAKISYTGKLMADV--EFQYLDAGSPVVRERFN--FGQFPVMLKTRR 82
R +SYTG + +V + + P + E++ + P+ML +
Sbjct: 84 DRTIRDLYPQEARNKDLSYTGNVCVNVIEMVENKEGKPPQISEQYRVPIAKIPIMLGSDV 143
Query: 83 CHLQGADSQKLVSLKEEA------AEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFR 136
CHL K L+ E A+ GGYFI+NG ERV S + N P+ V+S+
Sbjct: 144 CHLS-----KYTPLENEQINGHSQADQGGYFIINGKERVLISQVRKAYNKPVCFVKST-- 196
Query: 137 DRREGYTDKAVVIRCVRKD-------QSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIV 189
+ K V+ C + +SV +K+ + + + L+ K +PVGIV
Sbjct: 197 ------SQKEDVLICEMRSMCEETFHSTSVQVKM---IKNKIMVSLKLKRKLIDIPVGIV 247
Query: 190 LKALVDTNDL------EIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQD----- 238
K L D +FN +Y+K A+ + + E I D
Sbjct: 248 FKCLGYNPDQMGSKFRSLFN-----LPPEYEKYIDAIKNDCLEEFAYGIAVSAADGDNSD 302
Query: 239 ----LSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDY-------IFVHL---N 284
+HI + F+ + + + A I D +F HL +
Sbjct: 303 SGGESGGEEEADQEEHIVKVFRNMSTSVDKDGGMAATGITIEDVQKSLDMDLFPHLGITS 362
Query: 285 DNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGK 344
+ +LL FM++K + DN D ++ + G L + + +K +
Sbjct: 363 TRKQRVDLLAFMVKKYLLTLTRKIPVDNRDDYNHKRVETAGELYSFLFRL----LYKKFQ 418
Query: 345 KLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAG 404
K +I N +K D N + I T I +G Q ++
Sbjct: 419 KTCITQIRN--RKPDISNFLR---------TSGITTGILYSFSSGYWGVQRNTYIRTGVS 467
Query: 405 YTVQAERLNFLRFISFFRAVHRGASFAG--LRTTSVRKLLPESWGFLCPVHTPDGEPCGL 462
V +++ L S R V S G +T+ +R++ P S +CPV TP+G+ G
Sbjct: 468 QVVNP-KVSLLANYSSLRRVVIPESKDGKEAKTSEIRQIHPSSSFLVCPVETPEGKGVGT 526
Query: 463 LNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLD 522
+ +M C+V + + I+ + G+ +K P L +L++
Sbjct: 527 VLNMAVFCQVTTGIST-----------CEIMDQIDSFGVDLKCHCTIKD-PNNCLLLLIN 574
Query: 523 GRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFV 582
G G + V+ L L + S++ V +LG + +F+ +F+
Sbjct: 575 GSPYG----NGHANVIHRLNFLNDTNISIV--------VNRALGV----IEIFSDAGRFI 618
Query: 583 RPVRNIS---------LPS----EESQNIELIGPFE----QVFMEIRCPDGGDGGRRNAF 625
RP+ ++ +PS ++Q I I E + +E+R R N
Sbjct: 619 RPIFDLDKICNFEGEIVPSFKWFLDNQLIRYIDINEAAANSIAIELRDLSTNPNTRYNLM 678
Query: 626 PATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHL 685
E+ P GM +VA + P+ D QS RN + M KQ +GF V + + + L
Sbjct: 679 -----ELDPCGMFGIVAGIIPFPDRTQSARNCFYSSMVKQAIGF-VPCHNLKTETVSHTL 732
Query: 686 QTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIY 745
PQ P+V T+ ++EYP G NAIVA+ YTGY+ ED++ILNKSS+DRG+ Y
Sbjct: 733 NYPQKPLVTTSFAEYNQLNEYPNGINAIVAIACYTGYNQEDSIILNKSSIDRGLFGTITY 792
Query: 746 QTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPY-CSIYDKT 804
T T +G +R + K + ++ DG+ + Q + G+ C + K
Sbjct: 793 NTFTAQEKKNGIIEERIEIPSNAIKIRDCNYGLVGPDGIVRLRQRVKKGDVLICKVTIKN 852
Query: 805 TNSWRTNSRKGSESVFVD-----YVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHG 859
N + + SV V YV + N + + + R P IGDKF S
Sbjct: 853 KNQ---DEKLVDSSVIVQHGEEGYVDRIVDNVIDGCRIVKVVIGQMRTPEIGDKFCSGMA 909
Query: 860 QKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
QKG C ++P DMPF+ +GM PD+IINP+ PSRMTI ++ +V K
Sbjct: 910 QKGTCGMIFPQEDMPFTA-SGMTPDIIINPNCIPSRMTINQIISTVMGK 957
>gi|14587115|gb|AAK70486.1|AF387736_1 RNA polymerase I subunit 2 [Blepharisma japonicum]
Length = 259
Score = 214 bits (546), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 118/264 (44%), Positives = 157/264 (59%), Gaps = 24/264 (9%)
Query: 649 DHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIV--RTNTYTKYGIDEY 706
+ NQSPRN YQCQMAKQTMG + +FR D KLY L PQ P+V + + G ++Y
Sbjct: 1 EFNQSPRNTYQCQMAKQTMGTPLYNYQFRNDNKLYRLTMPQKPLVSSKCRQVRRNGFEKY 60
Query: 707 PTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLF 766
P+GTNA+VAV++YTGYDMEDAMI+NKS+ +RG HG +Y+T DL + K + +
Sbjct: 61 PSGTNAVVAVISYTGYDMEDAMIVNKSAYERGFGHGIVYKTNIRDL--NATKKENFSWIQ 118
Query: 767 RRNKDAKSLHSVIDSDGLPYVGQ--------------MIHPGEP---YCSIYDKTTNSWR 809
++ +D+DGLP+VGQ + P E +K T S++
Sbjct: 119 SEAAKKEATEKGLDTDGLPFVGQNGISQQPELYLLNIVTEPNESKNKASESNNKVTESYK 178
Query: 810 TNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWP 869
T S K E D + + +++ K N ++R RNPIIGDKFSSRHGQKGV S LWP
Sbjct: 179 TFSYKDMEKSTYDDIKIIGTDTRQF--KVNFKYRFQRNPIIGDKFSSRHGQKGVLSVLWP 236
Query: 870 DIDMPFSGVTGMRPDLIINPHAFP 893
DMPF+ G+ PD+IINPHA P
Sbjct: 237 QEDMPFT-EEGLTPDVIINPHAIP 259
>gi|520507|gb|AAA50224.1| RNA polymerase II, second largest subunit, partial [Caenorhabditis
elegans]
Length = 859
Score = 214 bits (546), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 206/771 (26%), Positives = 329/771 (42%), Gaps = 95/771 (12%)
Query: 184 LPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTT 243
+P+ IV +AL +D +I H+ +++ P + E VK L E +
Sbjct: 74 IPIMIVFRALGFVSDRDILGHIIYDFND-----------PEMMEMVKPSLDEA--FVIQE 120
Query: 244 RLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHL----NDNNDKFNLLIFMLQK 299
+ L IG + G+ E A +++ + H+ + K + +M+ +
Sbjct: 121 QNVALNFIGA--RGAKPGVTREQRIKYAREILQKELLPHVGVSEHCETKKAFFIGYMVHR 178
Query: 300 LFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFD 359
L D+ D + N+ + L G L+ + + L++ + Q I N D
Sbjct: 179 LLLAALGRRELDDRDHIGNKRLDLAGPLLAFLFRSLFRNLLKEMRMTAQKYINKN----D 234
Query: 360 FFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFIS 419
F L K + I + L TG Q Q RAG + RL + +S
Sbjct: 235 DFALDVCVK------TSTITRGLTYSLATGNWGDQKKAH-QSRAGVSQVLNRLTYTATLS 287
Query: 420 FFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSR 479
R + G + R+L WG +CP TP+G+ GL+ ++ Y S
Sbjct: 288 HLRRANSPIGREG-KLAKPRQLHNTQWGMVCPAETPEGQAVGLVKNLALMA-----YISV 341
Query: 480 GNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVA 539
G++ + IL L M +L ++ S + ++G VG+ E ++++
Sbjct: 342 GSLPE------PILEFLEEWSM-ENLEEVSPSAIADATKIFVNGAWVGI--HREPDQLMT 392
Query: 540 HLRRLK------VSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSE 593
L++L+ VS S++ D + + G L K R+I E
Sbjct: 393 TLKKLRRQMDIIVSEVSMVRDIRDREIRIYTDAGRVCRPLLIVENQKLALKKRHIDQLKE 452
Query: 594 ESQN--------------IELIGPFEQ--VFMEIRCPDGGDGGRRNAFPATHEEIHPTGM 637
+ +ELI E+ + + D GG + TH EIHP +
Sbjct: 453 AADEANKYTWSDLVGGGVVELIDSMEEETSMIAMMPEDLRSGGYCDTH--THCEIHPAMI 510
Query: 638 LSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNT 697
L V A++ P+ DHNQSPRN YQ M KQ MG R D + L PQ P+V T +
Sbjct: 511 LGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYTTNFHVRMDTLAHVLYYPQKPLVTTRS 570
Query: 698 YTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGN 757
+E P G NAIVA+L+Y+GY+ ED++I+N S++DRG+ Y++ ++ N
Sbjct: 571 MEYLRFNELPAGINAIVAILSYSGYNQEDSVIMNNSAIDRGLFRSVFYRSYR---DNEAN 627
Query: 758 KVDRGQKLFRRNKDAK------SLHSVIDSDGLPYVGQMIHPGEPYCS-------IYDKT 804
+ ++L + K SL+ +D DG+ G + + I D
Sbjct: 628 LDNANEELIEKPTREKCSGMRHSLYDKLDEDGIISPGMRVSGDDVIIGKTVALPDIDDDL 687
Query: 805 TNSWRTNSR-------KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSR 857
S + + + SE+ VD V + + + N + IR R R P IGDKF+SR
Sbjct: 688 DASGKKYPKRDASTFLRSSETGIVDQVMLSLNSDGN--KFVKIRMRSVRLPQIGDKFASR 745
Query: 858 HGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
HGQKG ++ DMPF+ G+ PD+IINPHA PSRMTI L+E + K
Sbjct: 746 HGQKGTMGIMYRQEDMPFTA-EGLTPDIIINPHAVPSRMTIGHLIECLQGK 795
>gi|261194511|ref|XP_002623660.1| DNA-directed RNA polymerase III polypeptide [Ajellomyces dermatitidis
SLH14081]
gi|239588198|gb|EEQ70841.1| DNA-directed RNA polymerase III polypeptide [Ajellomyces dermatitidis
SLH14081]
Length = 1204
Score = 214 bits (545), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 122/298 (40%), Positives = 168/298 (56%), Gaps = 20/298 (6%)
Query: 628 THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
TH EI P +L VA L PY HNQSPRN YQC M KQ +G R D LY +
Sbjct: 722 THLEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIANNQFLRIDSLLYTMVY 781
Query: 688 PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
PQ P+V+T T D+ P G +A VAV++Y+GYD+EDA++LNKSSVDRG Q+++
Sbjct: 782 PQKPMVKTRTIELIKYDKLPAGQSATVAVMSYSGYDIEDALVLNKSSVDRGFGRCQVFRK 841
Query: 748 ETIDLSDDGNKV-DRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIY--DKT 804
+ +L N D+ + R N H+++DSDGL VG+ ++ GE Y + +
Sbjct: 842 YSTNLKSYSNGTKDKLKGPDRENGLPIRKHALLDSDGLAAVGEKVNQGEVYINKVTPENA 901
Query: 805 TNSWRTNSRKGS--------------ESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPII 850
+S T S G + ++D V + ++N Q ++ R TR P +
Sbjct: 902 LSSGITGSDAGRPIAYIPSPQTYKLPDPSYIDKVMISATEAEN--QLIKVQTRQTRVPEV 959
Query: 851 GDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
GDKFSSRHGQKGV + DMPFS + G+ PD+I+NPH FPSRMT+ +LE +A K
Sbjct: 960 GDKFSSRHGQKGVVGIIAEYADMPFSDL-GIVPDIIMNPHGFPSRMTVGKMLELIAGK 1016
Score = 93.2 bits (230), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 107/461 (23%), Positives = 190/461 (41%), Gaps = 70/461 (15%)
Query: 36 DHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVS 95
+ CR ++Y ++ D F+Y+ V R G+ PVML++ +C L ++
Sbjct: 159 NECRLRDMTYAAPILVD--FEYVRGRQRVKRNGTAIGRMPVMLRSSKCVLSNKSEAEMQL 216
Query: 96 LKEEAAEMGGYFILNGLERVF-------RSVILPKQNYPMSMVRSSFRDRREGYTDKAVV 148
L E + GGYFI+NG E+V ++ ++ + + +V++S K+ +
Sbjct: 217 LHECPLDPGGYFIVNGTEKVILVQEQLSKNRVIVETDLKKEIVQASVTSSSNERKSKSYI 276
Query: 149 IRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCC 208
I ++KD+ + + +LN V P+ I+LKA+ +D E+ L
Sbjct: 277 I--MKKDRIYMR---HNVLNEDV-------------PIVILLKAMGIQSDKEML-LLVAG 317
Query: 209 YDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHF----QPVIDGLQS 264
D Y+ E I E L + T+ Q L++IG +P G+
Sbjct: 318 IDSTYQ------------EDFSINFEEAVKLGIYTQHQALEYIGSRIKINRKPNSFGITR 365
Query: 265 ESYYAVAETVIRDYIFVHLNDNNDKFN---LLIFMLQKLFSLVDHT-SVSDNPDSLQNQE 320
++ A I I H+ N F L + + + + H S+ D+ D + N+
Sbjct: 366 RNHVQEAIEAISSVIISHVVVENLNFRPKALYVAHMARRVLMAKHDPSLVDDRDYVGNKR 425
Query: 321 ILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKK------FDFFNLANIKKVMEKNP 374
+ L G L+ + ED +K + I+ I+ KK FD + + I
Sbjct: 426 LELAGQLLALL----FEDLFKKFQFDIKMNIDKVLKKPVRTEQFDAYGVVAIH------- 474
Query: 375 SKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLR 434
I + + TG + + +RAG T RL+++ + + + F R
Sbjct: 475 GNHITQGMNRAISTGNWSLKRF--RMERAGVTHVLSRLSYIAALGMMTRI--SSQFEKTR 530
Query: 435 TTS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVAS 474
S R L P +G LCP TP+GE CGL+ ++ + +
Sbjct: 531 KVSGPRALQPSQFGMLCPSDTPEGEACGLVKNLALMTHITT 571
>gi|239613518|gb|EEQ90505.1| DNA-directed RNA polymerase III polypeptide [Ajellomyces dermatitidis
ER-3]
gi|327357033|gb|EGE85890.1| DNA-directed RNA polymerase [Ajellomyces dermatitidis ATCC 18188]
Length = 1228
Score = 214 bits (545), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 122/298 (40%), Positives = 168/298 (56%), Gaps = 20/298 (6%)
Query: 628 THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
TH EI P +L VA L PY HNQSPRN YQC M KQ +G R D LY +
Sbjct: 746 THLEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIANNQFLRIDSLLYTMVY 805
Query: 688 PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
PQ P+V+T T D+ P G +A VAV++Y+GYD+EDA++LNKSSVDRG Q+++
Sbjct: 806 PQKPMVKTRTIELIKYDKLPAGQSATVAVMSYSGYDIEDALVLNKSSVDRGFGRCQVFRK 865
Query: 748 ETIDLSDDGNKV-DRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCS--IYDKT 804
+ +L N D+ + R N H+++DSDGL VG+ ++ GE Y + +
Sbjct: 866 YSTNLKSYSNGTKDKLKGPDRENGLPIRKHALLDSDGLAAVGEKVNQGEVYINKVTPENA 925
Query: 805 TNSWRTNSRKGS--------------ESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPII 850
+S T S G + ++D V + ++N Q ++ R TR P +
Sbjct: 926 LSSGITGSDAGRPIAYIPSPQTYKLPDPSYIDKVMISATEAEN--QLIKVQTRQTRVPEV 983
Query: 851 GDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
GDKFSSRHGQKGV + DMPFS + G+ PD+I+NPH FPSRMT+ +LE +A K
Sbjct: 984 GDKFSSRHGQKGVVGIIAEYADMPFSDL-GIVPDIIMNPHGFPSRMTVGKMLELIAGK 1040
Score = 93.6 bits (231), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 110/480 (22%), Positives = 194/480 (40%), Gaps = 70/480 (14%)
Query: 17 RHHIESFDYMLDEGLSEMFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPV 76
R E D D + + CR ++Y ++ D F+Y+ V R G+ PV
Sbjct: 164 RRADEEQDSKFDVASTITPNECRLRDMTYAAPILVD--FEYVRGRQRVKRNGTAIGRMPV 221
Query: 77 MLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVF-------RSVILPKQNYPMS 129
ML++ +C L ++ L E + GGYFI+NG E+V ++ ++ + +
Sbjct: 222 MLRSSKCVLSNKSEAEMQLLHECPLDPGGYFIVNGTEKVILVQEQLSKNRVIVETDLKKE 281
Query: 130 MVRSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIV 189
+V++S K+ +I ++KD+ + + +LN V P+ I+
Sbjct: 282 IVQASVTSSSNERKSKSYII--MKKDRIYMR---HNVLNEDV-------------PIVIL 323
Query: 190 LKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQ 249
LKA+ +D E+ L D Y+ E I E L + T+ Q L+
Sbjct: 324 LKAMGIQSDKEML-LLVAGIDSTYQ------------EDFSINFEEAVKLGIYTQHQALE 370
Query: 250 HIGEHF----QPVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKFN----LLIFMLQKLF 301
+IG +P G+ ++ A I I H+ N F + M +++
Sbjct: 371 YIGSRIKINRKPNSFGITRRNHVQEAIEAISSVIISHVVVENLNFRPKALYVAHMARRVL 430
Query: 302 SLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKK---- 357
S+ D+ D + N+ + L G L+ + ED +K + I+ I+ KK
Sbjct: 431 MAKHDPSLVDDRDYVGNKRLELAGQLLALL----FEDLFKKFQFDIKMNIDKVLKKPVRT 486
Query: 358 --FDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFL 415
FD + + I I + + TG + + +RAG T RL+++
Sbjct: 487 EQFDAYGVVAIH-------GNHITQGMNRAISTGNWSLKRF--RMERAGVTHVLSRLSYI 537
Query: 416 RFISFFRAVHRGASFAGLRTTS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVAS 474
+ + + F R S R L P +G LCP TP+GE CGL+ ++ + +
Sbjct: 538 AALGMMTRI--SSQFEKTRKVSGPRALQPSQFGMLCPSDTPEGEACGLVKNLALMTHITT 595
>gi|70990294|ref|XP_749996.1| DNA-directed RNA polymerase III, beta subunit [Aspergillus fumigatus
Af293]
gi|66847628|gb|EAL87958.1| DNA-directed RNA polymerase III, beta subunit, putative [Aspergillus
fumigatus Af293]
gi|159130477|gb|EDP55590.1| DNA-directed RNA polymerase III, beta subunit, putative [Aspergillus
fumigatus A1163]
Length = 1200
Score = 214 bits (545), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 120/301 (39%), Positives = 167/301 (55%), Gaps = 25/301 (8%)
Query: 627 ATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQ 686
TH EI P +L VA L PY HNQSPRN YQC M KQ +G R D LY +
Sbjct: 718 TTHLEIEPFTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIASNQFLRIDSILYLMV 777
Query: 687 TPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQ 746
PQ P+V++ T D+ P G NA+VAV++Y+GYD+EDA++LNK SVDRG Q+++
Sbjct: 778 YPQKPMVKSRTIELVKYDQLPAGQNAMVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFR 837
Query: 747 TETIDLSDDGNKV-DRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTT 805
+L N DR N H+++++DGL VG+ ++ GE Y +K+T
Sbjct: 838 KYVTNLKSYSNGTKDRLNPPTYENGAPIRKHALLEADGLAAVGEQVNAGEVYI---NKST 894
Query: 806 NSWRTNSRKGSES------------------VFVDYVAVDMKNSKNLPQKANIRFRHTRN 847
S GS++ ++D V ++ ++N Q + R TR
Sbjct: 895 PEQSNLSGIGSDAGRPVQYTPTPMTYKLHDPAYIDKVMYSVQENEN--QLVKVLVRQTRR 952
Query: 848 PIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAA 907
P +GDKFSSRHGQKGV + +DMPF+ +G+ PD+I+NPH FPSRMT+ +LE VA
Sbjct: 953 PEVGDKFSSRHGQKGVVGIIADQVDMPFTD-SGINPDIIMNPHGFPSRMTVGKMLELVAG 1011
Query: 908 K 908
K
Sbjct: 1012 K 1012
Score = 92.8 bits (229), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 116/491 (23%), Positives = 208/491 (42%), Gaps = 75/491 (15%)
Query: 21 ESFDYMLDEGLSEMFDH-CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLK 79
E D D S++ H CR +Y ++ V F+Y+ V R+ + G+ P+ML+
Sbjct: 143 EPQDVTPDATPSDVSPHECRLRDTTYAAPIL--VNFEYIRGRQRVTRKGVSIGRMPIMLR 200
Query: 80 TRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVF--------RSVIL---PKQNYPM 128
+ +C L ++ L E + GGYFI+NG E+V +I+ PK+
Sbjct: 201 SSKCVLANKTPSEMTVLNECPLDPGGYFIVNGTEKVILVQEQLSKNRIIVETDPKKEIVQ 260
Query: 129 SMVRSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGI 188
+ V SS +R+ K+ +I ++KD KLY N + ++ +P+ I
Sbjct: 261 ASVTSSSNERKS----KSYII--LKKD------KLYVKHN--------VLSED--IPIVI 298
Query: 189 VLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCL 248
+L+A+ + E+ L D Y+ + I E L + T+ Q L
Sbjct: 299 LLRAMGIHTEQEML-LLVAGVDSLYQDD------------FAINFEESIKLGIYTQQQAL 345
Query: 249 QHIGEHFQPVIDGLQSE---SYYAVAETVIRDYIFVHLNDNNDKFN----LLIFMLQKLF 301
IG + I+ QS ++ A I I H+ N F + M +++
Sbjct: 346 DWIGARIK--INRKQSSYRRTHIQEAVEAIASVIISHIEVKNMNFRPKAVYVAHMARRVL 403
Query: 302 SLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFF 361
+ S+ D+ D L N+ + L G L+ + ++ + + K I D++ N + + F
Sbjct: 404 MAKNDPSLVDDRDYLGNKRLELAGQLLALLFEDLFKKFCFDIKMNI-DKVLNKRNRAEQF 462
Query: 362 NLANIKKVMEKNPSKQIGTSIET---MLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFI 418
+ + + + ++ + +I T LK R+ +RAG T RL+++ +
Sbjct: 463 DAWTVMSMHSNHITQGMNRAISTGNWSLKRFRM---------ERAGVTHVLSRLSYIAAL 513
Query: 419 SFFRAVHRGASFAGLRTTS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYD 477
+ + F R S R L P +G LCP TP+GE CGL+ ++ + + D
Sbjct: 514 GMMTRI--SSQFEKTRKVSGPRALQPSQFGMLCPADTPEGEACGLVKNLALMTHITT-ND 570
Query: 478 SRGNIRDFSKM 488
G I++ M
Sbjct: 571 EEGPIKNLVFM 581
>gi|358054058|dbj|GAA99857.1| hypothetical protein E5Q_06560 [Mixia osmundae IAM 14324]
Length = 1327
Score = 214 bits (544), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 239/943 (25%), Positives = 393/943 (41%), Gaps = 132/943 (13%)
Query: 47 GKLMADVEFQYL----DAG-SPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKEEAA 101
G+L + E +++ +AG + + R G+ P+M+K+R CHL + L + E
Sbjct: 206 GELDENGEIEWITEEDEAGMQQISQHREYLGKVPMMIKSRFCHLLKMEEDALFNADECPL 265
Query: 102 EMGGYFILNGLERVF--------RSVILPKQNYP-----MSMVRSSFRDRREGYTDKAVV 148
+ GGYFI+NG E+V +V + + P ++ +RS V
Sbjct: 266 DKGGYFIINGSEKVLIAQERMAGNTVYVFGKAPPSPIAYLAEIRS--------------V 311
Query: 149 IRCVRKDQSSVTLKLYYLLN--------GSVRLGFWLQGKEYLLPVGIVLKALVDTNDLE 200
+ + SS+T+K+ N GSV + L +P+ +V +AL D +
Sbjct: 312 VESGSQTPSSLTVKMMRAGNPDKVGGATGSV-IRVTLPYIRADIPILVVFRALGIIPDKD 370
Query: 201 IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAE---VQDLSLTTRLQCLQHIGEHFQP 257
I H+ CYD + E +K L E VQD ++ L IG +
Sbjct: 371 ILQHI--CYDPNDTD---------MYELLKPSLEEAFPVQDQNV-----ALDFIGR--RG 412
Query: 258 VIDGLQSESYYAVAETVIRDYIFVHLN----DNNDKFNLLIFMLQKLFSLVDHTSVSDNP 313
GL + A V++ + H++ + K +M+ +L D+
Sbjct: 413 TAAGLTRDKRIQYARDVLQKEVLPHVSTSAGSHQKKAYFFGYMIHRLLMAAMQRRDLDDR 472
Query: 314 DSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKN 373
D + + L G L+ + + ++ + +Q ++ K+F N
Sbjct: 473 DHFGKKRLDLAGPLVASLFRTLFKKMIKDVYRYLQKCVDTQ-KEFKMNNAIR-------- 523
Query: 374 PSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGL 433
+ I ++ L TG Q RAG + R F +S R + G
Sbjct: 524 -ASTITNGLKYSLATGNWGEQKKA-AAARAGVSQVLNRYTFASTLSHLRRTNTPIGRDG- 580
Query: 434 RTTSVRKLLPESWGFLCPVHTPDGEPCG------LLNHMTSTCRVASYYDSRGNIRDFSK 487
+ R+L WG +CP TP+G+ CG L++++T + D + S
Sbjct: 581 KIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMSYITVGTAIRPIIDFLQDWGSVSL 640
Query: 488 MRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLR----R 543
+ LR V + + V P ++ VLL R G + S +V +R R
Sbjct: 641 EEVTDLRKGAKV-FVNGFWQGVHPNPDVLMKVLLRLRRTGTLNKSV--SIVRDIREREIR 697
Query: 544 LKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNIS-------LPSEESQ 596
+ V L V L L + L + + +++ L +EE +
Sbjct: 698 IFADPGRVCRPLLIVQDQQLRLRRCHLDLLMRDPASDYAAGFDDMTNWGIVEFLDAEEEE 757
Query: 597 NIELIGPFEQVFMEIRCPDGGDGGR--------RNAFPA------THEEIHPTGMLSVVA 642
+ +E + D + R+A A TH EIHP +L + A
Sbjct: 758 MAMICMTYEDLEAAYYAHDKDHAKQGVDPTARLRSAITASQAQRWTHCEIHPAMILGICA 817
Query: 643 NLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYG 702
++ P+ DHNQSPRN YQ M KQ MG + + R D L PQ P+ T +
Sbjct: 818 SIIPFPDHNQSPRNTYQSAMGKQAMGVYLTNYQVRLDTMANILFYPQKPLATTRSMDYLH 877
Query: 703 IDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGN-KVDR 761
+ P G NAIVA+L Y+GY+ ED++I+N+S++DRG+ Y+T G +++
Sbjct: 878 FRQLPAGQNAIVAILCYSGYNQEDSVIMNQSAIDRGLFRSFYYRTYMDTEKRQGALQMES 937
Query: 762 GQKLFRRN--KDAKSLHSVIDSDGLPYVGQMIHPGE-------PYCSIYDKTTNSWRTNS 812
+K R + + + + + DG VG+ + G+ P ++ + +
Sbjct: 938 FEKPSRLDTLRLKRGTYDKLGDDGFVRVGEQVRGGDIIIGKTAPIAPDSEELGQRTKDHV 997
Query: 813 R-------KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCS 865
+ K +E ++D V + N+ L + A +R R TR P GDKF+SRHGQKG
Sbjct: 998 KRDVSTPLKSTEEGYIDRVMI-TTNADGL-KFAKVRVRSTRIPQTGDKFASRHGQKGTIG 1055
Query: 866 QLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
+ DMPF+ G+ PDLIINPHA PSRMTI L+E + +K
Sbjct: 1056 ITYQQNDMPFTS-EGIVPDLIINPHAIPSRMTIGHLVECLLSK 1097
>gi|330038752|ref|XP_003239690.1| second-largest subunit of RNA polymerase III [Cryptomonas
paramecium]
gi|327206614|gb|AEA38792.1| second-largest subunit of RNA polymerase III [Cryptomonas
paramecium]
Length = 1087
Score = 214 bits (544), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 249/923 (26%), Positives = 392/923 (42%), Gaps = 149/923 (16%)
Query: 36 DHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVS 95
+ CR ISY ++ DV Y R P+M+++ C V
Sbjct: 80 NECRIRDISYMAPILVDV--CYFFKKKFFSRMNLTLCILPIMIRSTGCIFFNKSENFFVK 137
Query: 96 LKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCV--R 153
KE + GGYFI+ G+ERV V + ++ ++ + + ++G A VI C+ R
Sbjct: 138 FKECPLDGGGYFIIKGIERV---VSIRER---LTFNKINIEKDQDG-NLCACVISCLAER 190
Query: 154 KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL--LPVGIVLKALVDTNDLEIFNHLTCCYDE 211
+ ++S+ LK F+ + +L + V I+ KA+ T++ +
Sbjct: 191 RVKNSIILK---------NKKFYFRSNIFLEDILVLILYKAINITDEKDFI--------- 232
Query: 212 KYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGE----------HFQPVIDG 261
G VG + + E++ + + T+ Q L +I + F G
Sbjct: 233 ------GLVGFQF-ENILNFTVDEMKIMGIFTQKQALLYIYQRLDLKVWKYKQFFKKNAG 285
Query: 262 LQSESYYAVAETVIRDYIFVHL------NDN-NDKFNLLIFMLQKLFSLVDHTSVSDNPD 314
E + V YI +H+ DN K + M++K+ + +D T DN D
Sbjct: 286 NTYEFIKKIVFNVFSKYILIHVISQKKTRDNFYGKIMFISIMIKKILASIDQTICIDNKD 345
Query: 315 SLQNQEILLPGHLITIYLKE--------KLEDWLRKGKKLIQDEIENNGKKFDFFNLANI 366
N+ L G I I L E ++E K I+ IE + F FF+ I
Sbjct: 346 YYGNKRFELSGQ-IMIKLFENVFKRSVFQMEKKYFSLSKKIKGRIECD--VFSFFHSNFI 402
Query: 367 KKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHR 426
E S G I + Q++ G T RL+F+ IS ++
Sbjct: 403 SSSFEY--SLSSGNWILSKFS------------QEKQGMTQILSRLSFISSISSVNKINS 448
Query: 427 GASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFS 486
+ + ++R L P WG +CP TP+GE CG++ ++ S S + I++
Sbjct: 449 TYN-KSTKILTLRSLYPSQWGVVCPSDTPEGESCGIIKNL-SILTYISLDEKNKYIKN-- 504
Query: 487 KMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSS-EIEKVVAHLRRLK 545
L +GV + S K VK+ P + V L+ +G+ ++ V +RR
Sbjct: 505 ------LCFDLGVEFL-SFSK-VKTVPMDM--VFLNNNYIGLHANTPRFLFVFRKMRRDT 554
Query: 546 VSA--ASVIPDDLE-VGYVPLSLGGAYPGLYLFT---SPPKFVR--PVRNISLPSEESQN 597
+ + S+ D + ++ G A ++ S KF + + S + + +N
Sbjct: 555 IISQNTSIFWDTVNRFVFIWTDRGRACRPFFIIKLNESIDKFKKRNTAKIFSWKNLQREN 614
Query: 598 -IELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRN 656
+E + +EQ I + + N+ TH EI P +L + AN P+ +HNQSPRN
Sbjct: 615 FVEFLDTYEQNNALI----ANESKKINS-KTTHLEISPEIILGICANNIPFPNHNQSPRN 669
Query: 657 MYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAV 716
YQC M KQ++GF +RAD L L PQ PIV T G + G NA + V
Sbjct: 670 TYQCAMGKQSIGFIGLNQIYRADTILSLLVYPQKPIVGTKITELSGNNRLTGGINACICV 729
Query: 717 LAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDD---GNKVDRGQKLF---RRN- 769
++Y G+D+EDAM LN+SS+ RG + + I L D + Q+ F ++N
Sbjct: 730 MSYRGHDIEDAMTLNRSSIQRGFMKSVLLKKSKIILKDKKSLSTLYKKSQEFFFSIKKNF 789
Query: 770 -KDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNS---RKGSESVFVDYVA 825
K + ++ +PY+ I P +T N NS + VFV +V
Sbjct: 790 FSIKKKKNFKNSNEKMPYI---ISP--------RRTENQKMYNSILTHNNHDFVFVKFV- 837
Query: 826 VDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDL 885
FR TR P +GDKFSSRHGQKGVC + D PFS G PD+
Sbjct: 838 ----------------FRETRTPEVGDKFSSRHGQKGVCGIVNFYEDFPFSN-EGSVPDI 880
Query: 886 IINPHAFPSRMTIAMLLESVAAK 908
I+NPH FPSRMTI ++E + +K
Sbjct: 881 IMNPHGFPSRMTIGKIVELLGSK 903
>gi|426344421|ref|XP_004038768.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Gorilla
gorilla gorilla]
Length = 1097
Score = 213 bits (543), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 189/678 (27%), Positives = 298/678 (43%), Gaps = 76/678 (11%)
Query: 270 VAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
+ E +I D+ ++ + ++I+M+ +L D+ D N+ + L G L+
Sbjct: 271 ILEHIIYDF------EDPEMMEMVIYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLA 324
Query: 330 IYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTG 389
+ ++ L++ + Q I + GK F+ LA IK ++ I ++ L TG
Sbjct: 325 FLFRGMFKNLLKEVRIYAQKFI-DRGKDFNL-ELA-IK-------TRIISDGLKYSLATG 374
Query: 390 RLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFL 449
Q Q RAG + RL F +S R ++ G + R+L WG +
Sbjct: 375 NWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRLNSPIGRDG-KLAKPRQLHNTLWGMV 432
Query: 450 CPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLV 509
CP TP+G GL+ ++ ++ + IL L M +L ++
Sbjct: 433 CPAETPEGHAVGLVKNLALMAYIS-----------VGSQPSPILEFLEEWSM-ENLEEIS 480
Query: 510 KSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAASVIPDDLEVGYVPL 563
+ + ++G VG+ + E+++ LR+L+ VS S+I D E
Sbjct: 481 PAAIADATKIFVNGCWVGI--HKDPEQLMNTLRKLRRQMDIIVSEVSMIRDIREREIRIY 538
Query: 564 SLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN------------IELIGPFEQ--VFM 609
+ G L K + R+I E N +E I E+ V +
Sbjct: 539 TDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVVEYIDTLEEETVML 598
Query: 610 EIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGF 669
+ D + TH EIHP+ +L V A++ P+ DHNQSPRN YQ M KQ MG
Sbjct: 599 AMTPDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGV 658
Query: 670 SVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMI 729
+ R D + L PQ P+V T + E P G N+IVA+ +YTGY+ ED++I
Sbjct: 659 YITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAIASYTGYNQEDSVI 718
Query: 730 LNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDA-----KSLHSVIDSDGL 784
+N+S+VDRG Y++ S G D+ + + ++ +++ +D DGL
Sbjct: 719 MNRSAVDRGFFRSVFYRSYKEQESKKG--FDQEEVFEKPTRETCQGMRHAIYDKLDDDGL 776
Query: 785 PYVGQMIHPGE----PYCSIYDKTTNSWRTNSR----------KGSESVFVDYVAVDMKN 830
G + + ++ + TN R + SE+ VD V V +
Sbjct: 777 IAPGVRVSGDDVIIGKTVTLPENEDELESTNRRYTKRDCSTFLRTSETGIVDQVMVTLNQ 836
Query: 831 SKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPH 890
+ IR R R P IGDKF+SRHGQKG C + DMPF+ G+ PD+IINPH
Sbjct: 837 EGY--KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFT-CEGITPDIIINPH 893
Query: 891 AFPSRMTIAMLLESVAAK 908
A PSRMTI L+E + K
Sbjct: 894 AIPSRMTIGHLIECLQGK 911
Score = 47.0 bits (110), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 3/86 (3%)
Query: 34 MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVR---ERFNFGQFPVMLKTRRCHLQGADS 90
M + R ++Y+ L D+ + G ++ ++ G+ P+ML++ C L G
Sbjct: 96 MPNEARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTD 155
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVF 116
+ L L E + GGYFI+NG E+V
Sbjct: 156 RDLCELNECPLDPGGYFIINGSEKVL 181
>gi|356518213|ref|XP_003527775.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Glycine
max]
Length = 1205
Score = 213 bits (542), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 233/898 (25%), Positives = 392/898 (43%), Gaps = 143/898 (15%)
Query: 71 FGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVF---RSVILPK---Q 124
G+ PVM+K+ C ++ A+ + ++ + GGYFI+ G E+ F + L +
Sbjct: 197 IGRLPVMVKSDLCWMKEAEKE------DDEFDHGGYFIVKGAEKTFIAQEQLYLKRLWVM 250
Query: 125 NYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLL 184
N P M+ + +R +VI+ V + + NG + L + E +
Sbjct: 251 NSPGWMIAYKSQMKR-----NRMVIKLVGNSRGE------EVENGDMSLAVYFLSVE--V 297
Query: 185 PVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVK-IILAEVQDLSLTT 243
PV ++ AL ++D EI + + C D+ R++ I+ A V+D
Sbjct: 298 PVWVLFFALGVSSDKEIVDLIGCGNDDV---------------RIQNILFASVRDADEKC 342
Query: 244 -RLQCLQHIGEHFQPVIDGLQ---SESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQK 299
+ +H ++ + + +Q SES E Y+F ++ N K L +M++
Sbjct: 343 GAFRRGRHAVQYLEKCVKSVQFPPSESMQECLEM----YVFPGISGLNRKARFLAYMVKG 398
Query: 300 LFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFD 359
L DN D +N+ + L L+ LK + ++ K +Q D
Sbjct: 399 LLLAYTGRRKCDNRDDFRNKRLELASELLDRELKVHIAHARKRMAKALQR---------D 449
Query: 360 FFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFIS 419
+ +++ + + I ++ TG + +++ +G R N L+ ++
Sbjct: 450 LYGDRDVRPIEHYLDASIITNGLQRAFSTGAW-SHPYKRMERISGVVANVGRTNPLQTMA 508
Query: 420 FFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSR 479
R + + G + R P WG +C + TPDGE CGL+ ++ T V++
Sbjct: 509 ELRRARQQVQYTG-KVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLAVTGLVST----- 562
Query: 480 GNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLS---VLLDGRVVGVIPSSEIEK 536
D S + IL L+ GM +LV + + VLL+G VGV P S
Sbjct: 563 ----DVSAVSEYILPKLLDCGM----EELVDDTSTHLGNKDKVLLNGDWVGVCPDS--SS 612
Query: 537 VVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRP---------VRN 587
VA LR + + +P +E+ + + +++ + +RP ++
Sbjct: 613 FVAELRSRR--RRNELPHQVEI-----KRDQSQHEVRIYSDAGRILRPLLVVGNLLKIKG 665
Query: 588 ISLPSEESQN------IELIGPFEQVFMEIRCPDG------GDGGRRNAFPATHEEIHPT 635
Q+ IELIGP E+ E C G G+R + TH E+ +
Sbjct: 666 FKSDCNSFQSLLDKGVIELIGPEEE---EDCCTAWGVEYLFGKEGKR-SVKYTHCELDMS 721
Query: 636 GMLSVVANLTPYSDHNQSPRNMYQCQM-AKQTMGFSVQALKFRADQKLYHLQTPQTPIVR 694
+L + +L P+++H+ + R +YQ Q + Q +GFS R D + L PQ P+ R
Sbjct: 722 FLLGLSCSLVPFANHDHARRVLYQSQKHSSQAIGFSTTNPNIRVDTLSHQLHYPQKPLFR 781
Query: 695 T----------NTYTKYGIDEYP------TGTNAIVAVLAYTGYDMEDAMILNKSSVDRG 738
T N+ + I + P G NAIVAV + GY+ ED++++N++S+ RG
Sbjct: 782 TMASDCLGKPDNSLGQNKISKIPPKAEFYNGQNAIVAVNVHLGYNQEDSLVMNRASLQRG 841
Query: 739 MC---HGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSV--IDSDGLPYVGQMIHP 793
M H + Y++E ID + +K + + + K + V +D DG PYVG +
Sbjct: 842 MFRSEHIRSYKSE-IDNKESSDKKRKPEDIVNFAKLQSKIGRVDSLDDDGFPYVGANLQS 900
Query: 794 GEPYCSIYDKTTNSWRTNS--RKGSESVFVDYVAVDMKN-SKNLPQKANIRFRHTRNPII 850
G+ I K S NS K +E +V V + + KN A + R R+P++
Sbjct: 901 GD---IIIGKGAESGADNSVKLKHTERGYVQKVVLSSNDEGKNF---AVVSLRQVRSPVL 954
Query: 851 GDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
GDKFSS HGQKGV L + PF+ G+ PD++INPHAFPSR T LLE+ K
Sbjct: 955 GDKFSSMHGQKGVLGFLESQENFPFT-RQGIVPDIVINPHAFPSRQTPGQLLEAALGK 1011
>gi|378727686|gb|EHY54145.1| DNA-directed RNA polymerase III subunit C2 [Exophiala dermatitidis
NIH/UT8656]
Length = 1225
Score = 213 bits (542), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 124/299 (41%), Positives = 162/299 (54%), Gaps = 21/299 (7%)
Query: 628 THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
TH EI P +L VA L PY HNQSPRN YQC M KQ +GF R D LY +
Sbjct: 736 THLEIEPFTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGFIANNQFLRIDTLLYLMVY 795
Query: 688 PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
PQ P+ +T T D+ P G NA VAV++Y+GYD+EDA++LNK+SVDRG Q+ +
Sbjct: 796 PQKPLCKTRTIELVKYDKLPAGQNATVAVMSYSGYDIEDALVLNKASVDRGFGRCQVLRK 855
Query: 748 ETIDLSDDGNKV-DRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIY----- 801
+ L N D + N H+++D DG+ VG + GE Y + Y
Sbjct: 856 YPVSLKLYANGTKDTVEGPTMENGVPVKAHALLDEDGIASVGAKVSQGEVYVNKYVPENA 915
Query: 802 ------DKTTNSWRTNSRKGSESV------FVDYVAVDMKNSKNLPQKANIRFRHTRNPI 849
D +NS T+ ++ ++D V V S N Q I+ R TR P
Sbjct: 916 NSSGLSDTASNSLGTSLMPQAQKYRLPDPSYIDKVMVSEVESGN--QLIKIQTRQTRVPE 973
Query: 850 IGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
+GDKFSSRHGQKGV + +DMPFS G+ PD+I+NPH FPSRMT+ +LE VA K
Sbjct: 974 VGDKFSSRHGQKGVVGIIAEQVDMPFSD-RGITPDIIMNPHGFPSRMTVGKMLELVAGK 1031
Score = 97.4 bits (241), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 101/447 (22%), Positives = 187/447 (41%), Gaps = 56/447 (12%)
Query: 36 DHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVS 95
+ CR ++Y ++ D+ +Y + R+ G+ P+ML++ RC L ++ +
Sbjct: 173 NECRLRDMTYAAPILVDI--RYTKSKVAYRRKGMPIGRLPIMLRSSRCVLANKSEAEMCA 230
Query: 96 LKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKD 155
+ E + GGYFI+NG E+ VIL ++ + + ++E T RK
Sbjct: 231 MDECPLDPGGYFIVNGTEK----VILVQEQLSKNRIIVEADPKKELITASVTSSTHARKS 286
Query: 156 QSSVTLK---LYY---LLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY 209
+S + LK LY +LN V P+ ++LKA+ T+D+++ +
Sbjct: 287 KSYIVLKKDMLYMRHNILNEDV-------------PICVLLKAMGVTSDMDMMAIV---- 329
Query: 210 DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHF----QPVIDGLQSE 265
A + + I E L + T+ Q L ++G +P G
Sbjct: 330 ---------AGTDSTLQDDFAINFEETIKLGIHTQQQALDYLGARIKITRKPTPFGQSRR 380
Query: 266 SYYAVAETVIRDYIFVHLNDNNDKFN----LLIFMLQKLFSLVDHTSVSDNPDSLQNQEI 321
+Y A + + H+ N F + M +++ + ++ D+ D + N+ +
Sbjct: 381 NYVQEALEAVSNVFIAHVPIENLNFRPKAIYVAHMARRVLMAKQNPALVDDRDYVGNKRL 440
Query: 322 LLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTS 381
L G L+++ ED +K I+ ++ +K + +A+ VM + + I
Sbjct: 441 ELAGQLLSLL----FEDLFKKYNYDIKMNMDKVLRKPNRTEMADPCTVMMGH-ANHITQG 495
Query: 382 IETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRK 440
+ + TG + RAG T RL+F+ + + + F R S R
Sbjct: 496 MNRAIATGNWNLKRF--RMDRAGVTHLLSRLSFIASLGMMTRI--SSQFEKTRKVSGPRA 551
Query: 441 LLPESWGFLCPVHTPDGEPCGLLNHMT 467
L P S+G LCP TP+GE CGL+ ++
Sbjct: 552 LQPSSFGMLCPADTPEGEACGLVKNLA 578
>gi|121703239|ref|XP_001269884.1| DNA-directed rna polymerase III subunit [Aspergillus clavatus NRRL 1]
gi|119398027|gb|EAW08458.1| DNA-directed rna polymerase III subunit [Aspergillus clavatus NRRL 1]
Length = 1246
Score = 213 bits (542), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 121/300 (40%), Positives = 166/300 (55%), Gaps = 25/300 (8%)
Query: 628 THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
TH EI P +L VA L PY HNQSPRN YQC M KQ +G R D LY +
Sbjct: 765 THLEIEPFTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIASNQFLRIDSILYLMVY 824
Query: 688 PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
PQ P+V++ T D+ P G NA+VAV++Y+GYD+EDA++LNK SVDRG Q+++
Sbjct: 825 PQKPMVKSRTIELTKYDQLPAGQNAMVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRK 884
Query: 748 ETIDLSDDGNKV-DRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTN 806
+L N DR N H++++SDGL VG+ ++ GE Y +K+T
Sbjct: 885 YVTNLKSYSNGTKDRLNPPTYENGAPIRKHALLESDGLAAVGEQVNAGEVYI---NKSTP 941
Query: 807 SWRTNSRKGSES------------------VFVDYVAVDMKNSKNLPQKANIRFRHTRNP 848
S GS++ ++D V ++ ++N Q + R TR P
Sbjct: 942 DQSHMSGIGSDAGRPIQYTPTPMTYKLHDPAYIDKVMYSVQENEN--QLVKVLVRQTRRP 999
Query: 849 IIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
+GDKFSSRHGQKGV + DMPF+ + G+ PD+I+NPH FPSRMT+ +LE VA K
Sbjct: 1000 EVGDKFSSRHGQKGVVGIIADQADMPFTDL-GINPDIIMNPHGFPSRMTVGKMLELVAGK 1058
Score = 93.6 bits (231), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 114/491 (23%), Positives = 207/491 (42%), Gaps = 75/491 (15%)
Query: 21 ESFDYMLDEGLSEMFDH-CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLK 79
E D LD S + H CR +Y ++ D F+Y+ V+R + G+ P+ML+
Sbjct: 189 EPQDASLDAFPSSVSPHECRLRDTTYAAPILVD--FEYIRGRQRVIRRGVSIGRMPIMLR 246
Query: 80 TRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVF--------RSVIL---PKQNYPM 128
+ +C L ++ L E + GGYFI+NG E+V +I+ PK+
Sbjct: 247 SSKCVLANKTPSEMTVLNECPLDPGGYFIVNGTEKVILVQEQLSKNRIIVETDPKKEIVQ 306
Query: 129 SMVRSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGI 188
+ V SS +R+ K+ +I ++KD+ V + +LN + P+ I
Sbjct: 307 ASVTSSSNERKS----KSYII--LKKDKLYVK---HNVLNEDI-------------PIVI 344
Query: 189 VLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCL 248
+L+A+ + E+ L D Y+ + I + L + T+ Q L
Sbjct: 345 LLRAMGIHTEQEML-LLVAGVDSLYQDD------------FAINFEDSIKLGIYTQQQAL 391
Query: 249 QHIGEHFQPVIDGLQ---SESYYAVAETVIRDYIFVHLNDNNDKFN----LLIFMLQKLF 301
IG + I+ Q ++ A I I H+ N F + M +++
Sbjct: 392 DWIGARIK--INRKQMSYRRTHIQEAVEAIASVIISHIEVKNMNFRPKAVYVAHMARRVL 449
Query: 302 SLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFF 361
+ S+ D+ D L N+ + L G L+ + ++ + + K I D++ N + + F
Sbjct: 450 MAKNDPSLVDDRDYLGNKRLELAGQLLALLFEDLFKKFCFDIKMNI-DKVLNKRNRAEAF 508
Query: 362 NLANIKKVMEKNPSKQIGTSIET---MLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFI 418
+ ++ + + ++ + +I T LK R+ +RAG T RL+++ +
Sbjct: 509 DAWSVMSMHGNHITQGMNRAISTGNWSLKRFRM---------ERAGVTHVLSRLSYIAAL 559
Query: 419 SFFRAVHRGASFAGLRTTS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYD 477
+ + F R S R L P +G LCP TP+GE CGL+ ++ + + D
Sbjct: 560 GMMTRI--SSQFEKTRKVSGPRALQPSQFGMLCPADTPEGEACGLVKNLALMTHITT-ND 616
Query: 478 SRGNIRDFSKM 488
G I++ M
Sbjct: 617 EEGPIKNLVFM 627
>gi|295658889|ref|XP_002790004.1| DNA-directed RNA polymerase III subunit RPC2 [Paracoccidioides sp.
'lutzii' Pb01]
gi|226282087|gb|EEH37653.1| DNA-directed RNA polymerase III subunit RPC2 [Paracoccidioides sp.
'lutzii' Pb01]
Length = 1205
Score = 212 bits (540), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 120/298 (40%), Positives = 165/298 (55%), Gaps = 20/298 (6%)
Query: 628 THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
TH EI P +L VA L PY HNQSPRN YQC M KQ +G R D LY +
Sbjct: 723 THLEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIANNQFLRIDSLLYTMVY 782
Query: 688 PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
PQ P+V+T T D P G A VAV++Y+GYD+EDA++LNK S+DRG Q+++
Sbjct: 783 PQKPMVKTRTIELIKYDRLPAGQAATVAVMSYSGYDIEDALVLNKGSIDRGFGRCQVFRK 842
Query: 748 ETIDLSDDGNKV-DRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIY--DKT 804
+ +L N D+ + R N H+++D+DGL VG+ ++ GE Y + +
Sbjct: 843 YSTNLKSYSNGTKDKLKGPDRENGLPVRKHALLDNDGLAAVGEKVNQGEVYINKVTPENA 902
Query: 805 TNSWRTNSRKGS--------------ESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPII 850
+S T S G + ++D V + ++N Q ++ R TR P +
Sbjct: 903 LSSGITGSDAGRPITYIPSPQTYKLPDPSYIDKVMISSTEAEN--QLIKVQTRQTRRPEV 960
Query: 851 GDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
GDKFSSRHGQKGV + DMPFS + G+ PD+I+NPH FPSRMT+ +LE VA K
Sbjct: 961 GDKFSSRHGQKGVVGIIAEQADMPFSDL-GIVPDIIMNPHGFPSRMTVGKMLELVAGK 1017
Score = 94.4 bits (233), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 111/453 (24%), Positives = 185/453 (40%), Gaps = 68/453 (15%)
Query: 36 DHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVS 95
+ CR ++Y ++ D F+Y+ V R G+ PVML++ +C L ++
Sbjct: 160 NECRLRDMTYASPILVD--FEYVRGRQRVKRNGTAIGRMPVMLRSSKCVLSNKSEAEMQL 217
Query: 96 LKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKD 155
L+E + GGYFI+NG E+ VIL ++ + V ++E RK
Sbjct: 218 LQECPLDPGGYFIVNGTEK----VILVQEQLSKNRVIVETDLKKEIVQASVTSSSNERKS 273
Query: 156 QSSVTLK------LYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY 209
+S + LK + +LN V P+ I+LKA+ +D E+ L
Sbjct: 274 KSYIILKKERIYVRHNVLNEDV-------------PIVILLKAMGIQSDKEML-LLVAGI 319
Query: 210 DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHF----QPVIDGLQSE 265
D Y+ E I E L + T+ Q L++IG +P G+
Sbjct: 320 DSTYQ------------EDFAINFEEAVKLGIYTQHQALEYIGSRIKINRKPNNFGVIRR 367
Query: 266 SYYAVAETVIRDYIFVHLNDNNDKFN---LLIFMLQKLFSLVDHT-SVSDNPDSLQNQEI 321
+Y A I I H+ N F L + + + + H S+ D+ D + N+ +
Sbjct: 368 NYVQEAIEAISSVIISHVVVENLNFRPKALYVAHMARRVLMAKHDPSLVDDRDYVGNKRL 427
Query: 322 LLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKK------FDFFNLANIKKVMEKNPS 375
L G L+++ ED +K + I+ I+ KK FD + + I
Sbjct: 428 ELAGQLLSLL----FEDLFKKFQFDIKMNIDKVLKKPVRTEQFDAYGVVAIH-------G 476
Query: 376 KQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRT 435
I + + TG + + +RAG T RL+++ + + + F R
Sbjct: 477 NHITQGMNRAISTGNWSLKRF--RMERAGVTHVLSRLSYIAALGMMTRI--SSQFEKTRK 532
Query: 436 TS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMT 467
S R L P +G LCP TP+GE CGL+ ++
Sbjct: 533 VSGPRALQPSQFGMLCPSDTPEGEACGLVKNLA 565
>gi|258571555|ref|XP_002544581.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Uncinocarpus
reesii 1704]
gi|237904851|gb|EEP79252.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Uncinocarpus
reesii 1704]
Length = 1202
Score = 212 bits (540), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 121/298 (40%), Positives = 162/298 (54%), Gaps = 20/298 (6%)
Query: 628 THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
TH EI P +L VA L PY HNQSPRN YQC M KQ +G R D LY +
Sbjct: 720 THLEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIANNQFLRIDSLLYTMVY 779
Query: 688 PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
PQ P+V+T T D P G +A VAV++Y+GYD+EDA++LNK+SVDRG Q+++
Sbjct: 780 PQKPMVKTRTIELVKYDRLPAGQSATVAVMSYSGYDIEDALVLNKASVDRGFGRCQVFRK 839
Query: 748 ETIDLSDDGNKV-DRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCS--IYDKT 804
+ +L N DR R N H+++DSDGL VG+ + GE Y + +
Sbjct: 840 YSANLKSYSNGTKDRLLGPDRENGAPIRKHALLDSDGLAAVGEKVSSGEVYINKVTPENA 899
Query: 805 TNSWRTNSRKGS--------------ESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPII 850
+S T S G + ++D V + +N Q ++ R TR P +
Sbjct: 900 LSSGITGSDAGGPIAYIPSPQTYKLPDPSYIDKVMISTTEGEN--QLLKVQTRQTRRPEV 957
Query: 851 GDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
GDKFSSRHGQKGV + DMPF+ G+ PD+I+NPH FPSRMT+ +LE V K
Sbjct: 958 GDKFSSRHGQKGVVGIIAEQADMPFTD-QGIVPDIIMNPHGFPSRMTVGKMLELVVGK 1014
Score = 96.7 bits (239), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 114/458 (24%), Positives = 191/458 (41%), Gaps = 78/458 (17%)
Query: 36 DHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVS 95
+ CR ++Y ++ D F+Y+ V R G+ PVML++ +C L ++
Sbjct: 157 NECRLRDMTYAAPILVD--FEYVRGRQRVKRNGTAIGRMPVMLRSSKCVLSKKSPGEMYQ 214
Query: 96 LKEEAAEMGGYFILNGLERVF--------RSVIL---PKQNYPMSMVRSSFRDRREGYTD 144
L E + GGYFI+NG E+V VI+ PK+ + V SS +R+
Sbjct: 215 LHECPLDPGGYFIVNGTEKVILVQEQLSKNRVIVETDPKKEIVQASVTSSSNERK----S 270
Query: 145 KAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNH 204
K+ +I ++KD+ + L+ + +L+ V P+ I+LKA+ +D E+
Sbjct: 271 KSYII--LKKDR--IYLR-HNVLSDDV-------------PIVIILKAMGIQSDKEML-L 311
Query: 205 LTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHF----QPVID 260
L D Y+ E I E L + T+ Q L+++G H +P
Sbjct: 312 LVAGVDSVYQ------------EDFAINFEESIKLGIYTQQQALEYLGSHIKIMRKPNSF 359
Query: 261 GLQSESYYAVAETVIRDYIFVHLNDNNDKFN----LLIFMLQKLFSLVDHTSVSDNPDSL 316
G +Y A I I H+ N F + M +++ S+ D+ D +
Sbjct: 360 GGVRRNYIQEAVEAIASVIISHVQVENMNFRPKALYVAHMARRVLMAKHDPSLVDDRDYV 419
Query: 317 QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKK------FDFFNLANIKKVM 370
N+ + L G L+ + ED +K I+ I+ KK FD F++ I
Sbjct: 420 GNKRLELAGQLLALL----FEDLFKKFCFDIKMNIDKVLKKPVRTEAFDAFSVVAIH--- 472
Query: 371 EKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASF 430
I + + TG + + +RAG T RL+++ + + + F
Sbjct: 473 ----GNHITQGMNRAISTGNWSLKRF--RMERAGVTHVLSRLSYISALGMMTRI--SSQF 524
Query: 431 AGLRTTS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMT 467
R S R L P +G LCP TP+GE CGL+ ++
Sbjct: 525 EKTRKVSGPRALQPSQFGMLCPADTPEGEACGLVKNLA 562
>gi|119497281|ref|XP_001265400.1| DNA-directed rna polymerase III subunit [Neosartorya fischeri NRRL
181]
gi|119413562|gb|EAW23503.1| DNA-directed rna polymerase III subunit [Neosartorya fischeri NRRL
181]
Length = 1200
Score = 212 bits (540), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 120/300 (40%), Positives = 165/300 (55%), Gaps = 25/300 (8%)
Query: 628 THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
TH EI P +L VA L PY HNQSPRN YQC M KQ +G R D LY +
Sbjct: 719 THLEIEPFTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIASNQFLRIDSILYLMVY 778
Query: 688 PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
PQ P+V++ T D+ P G NA+VAV++Y+GYD+EDA++LNK SVDRG Q+++
Sbjct: 779 PQKPMVKSRTIELVKYDQLPAGQNAMVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRK 838
Query: 748 ETIDLSDDGNKV-DRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTN 806
+L N DR N H+++++DGL VG+ ++ GE Y +K+T
Sbjct: 839 YVTNLKSYSNGTKDRLNPPTYENGAPIRKHALLEADGLAAVGEQVNAGEVYI---NKSTP 895
Query: 807 SWRTNSRKGSES------------------VFVDYVAVDMKNSKNLPQKANIRFRHTRNP 848
S GS++ ++D V ++ ++N Q + R TR P
Sbjct: 896 EQSNLSGIGSDAGRPVQYTPTPMTYKLHDPAYIDKVMYSVQENEN--QLVKVLVRQTRRP 953
Query: 849 IIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
+GDKFSSRHGQKGV + DMPF+ G+ PD+I+NPH FPSRMT+ +LE VA K
Sbjct: 954 EVGDKFSSRHGQKGVVGIIADQADMPFTD-AGINPDIIMNPHGFPSRMTVGKMLELVAGK 1012
Score = 92.8 bits (229), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 116/491 (23%), Positives = 208/491 (42%), Gaps = 75/491 (15%)
Query: 21 ESFDYMLDEGLSEMFDH-CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLK 79
E D D S++ H CR +Y ++ V F+Y+ V R+ + G+ P+ML+
Sbjct: 143 EPQDVTPDATPSDVSPHECRLRDTTYAAPIL--VNFEYIRGRQRVTRKGVSIGRMPIMLR 200
Query: 80 TRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVF--------RSVIL---PKQNYPM 128
+ +C L ++ L E + GGYFI+NG E+V +I+ PK+
Sbjct: 201 SSKCVLANKTPSEMTVLNECPLDPGGYFIVNGTEKVILVQEQLSKNRIIVETDPKKEIVQ 260
Query: 129 SMVRSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGI 188
+ V SS +R+ K+ +I ++KD KLY N + ++ +P+ I
Sbjct: 261 ASVTSSSNERKS----KSYII--LKKD------KLYVKHN--------VLSED--IPIVI 298
Query: 189 VLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCL 248
+L+A+ + E+ L D Y+ + I E L + T+ Q L
Sbjct: 299 LLRAMGIHTEQEML-LLVAGVDSLYQDD------------FAINFEESIKLGIYTQQQAL 345
Query: 249 QHIGEHFQPVIDGLQSE---SYYAVAETVIRDYIFVHLNDNNDKFN----LLIFMLQKLF 301
IG + I+ QS ++ A I I H+ N F + M +++
Sbjct: 346 DWIGARIK--INRKQSSYRRTHIQEAVEAIASVIISHIEVKNMNFRPKAVYVAHMARRVL 403
Query: 302 SLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFF 361
+ S+ D+ D L N+ + L G L+ + ++ + + K I D++ N + + F
Sbjct: 404 MAKNDPSLVDDRDYLGNKRLELAGQLLALLFEDLFKKFCFDIKMNI-DKVLNKRNRAEQF 462
Query: 362 NLANIKKVMEKNPSKQIGTSIET---MLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFI 418
+ + + + ++ + +I T LK R+ +RAG T RL+++ +
Sbjct: 463 DAWTVMSMHSNHITQGMNRAISTGNWSLKRFRM---------ERAGVTHVLSRLSYIAAL 513
Query: 419 SFFRAVHRGASFAGLRTTS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYD 477
+ + F R S R L P +G LCP TP+GE CGL+ ++ + + D
Sbjct: 514 GMMTRI--SSQFEKTRKVSGPRALQPSQFGMLCPADTPEGEACGLVKNLALMTHITT-ND 570
Query: 478 SRGNIRDFSKM 488
G I++ M
Sbjct: 571 EEGPIKNLVFM 581
>gi|240276965|gb|EER40475.1| DNA-directed RNA polymerase III [Ajellomyces capsulatus H143]
Length = 1227
Score = 212 bits (539), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 120/298 (40%), Positives = 167/298 (56%), Gaps = 20/298 (6%)
Query: 628 THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
TH EI P +L VA L PY HNQSPRN YQC M KQ +G R D LY +
Sbjct: 745 THLEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGVIANNQFLRIDSLLYTMVY 804
Query: 688 PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
PQ P+V+T T D+ P G +A VAV++Y+GYD+EDA++LNK SVDRG Q+++
Sbjct: 805 PQKPMVKTRTIELIKYDKLPAGQSATVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRK 864
Query: 748 ETIDLSDDGNKV-DRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCS--IYDKT 804
+ +L N D+ + R N H+++D+DGL VG+ ++ GE Y + +
Sbjct: 865 YSTNLKSYSNGTKDKLKGPDRENGVPIRKHALLDNDGLAAVGEKVNYGEVYINKVTPENA 924
Query: 805 TNSWRTNSRKGS--------------ESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPII 850
+S T S G + ++D V + ++N Q ++ R TR P +
Sbjct: 925 LSSGITGSDAGRPIAYIPSPQTYKLPDPSYIDKVMISATEAEN--QLIKVQTRQTRVPEV 982
Query: 851 GDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
GDKFSSRHGQKGV + DMPFS + G+ PD+I+NPH FPSRMT+ +LE +A K
Sbjct: 983 GDKFSSRHGQKGVVGIIAEHADMPFSDL-GIVPDIIMNPHGFPSRMTVGKMLELIAGK 1039
Score = 92.8 bits (229), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 107/454 (23%), Positives = 184/454 (40%), Gaps = 56/454 (12%)
Query: 36 DHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVS 95
+ CR ++Y ++ D F+Y+ V R G+ PVML++ +C L ++
Sbjct: 182 NECRLRDMTYAAPILVD--FEYVRGRQRVKRNGTAIGRMPVMLRSSKCVLSNKSEAEMQL 239
Query: 96 LKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKD 155
L+E + GGYFI+NG E+ VIL ++ + V ++E RK
Sbjct: 240 LQECPLDPGGYFIVNGTEK----VILVQEQLSKNRVIVETDLKKEIVQASVTSSSNERKS 295
Query: 156 QSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKK 215
+S + LK R+ +P+ I+LKA+ +D E+ L D ++
Sbjct: 296 KSYIILK-------KDRIYMRHNVLSEDVPIVILLKAMGIQSDKEML-LLVAGIDSTFQ- 346
Query: 216 EKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHF----QPVIDGLQSESYYAVA 271
E I E LS+ T+ Q L++IG +P G+ ++ A
Sbjct: 347 -----------EDFAINFEESVKLSIYTQHQALEYIGSRIKINRKPNSFGITRRNHVQEA 395
Query: 272 ETVIRDYIFVHLNDNNDKFN----LLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHL 327
I I H+ N F + M +++ S+ D+ D + N+ + L G L
Sbjct: 396 IEAISSVIISHVVVENLNFRPKALYVAHMARRVLMAKHDPSLVDDRDYVGNKRLELAGQL 455
Query: 328 ITIYLKEKLEDWLRKGKKLIQDEIENNGKK------FDFFNLANIKKVMEKNPSKQIGTS 381
+ + ED +K + I+ I+ KK FD + + I I
Sbjct: 456 LALL----FEDLFKKFQFDIKMNIDKVLKKPVRTEQFDAYGVVAIH-------GNHITQG 504
Query: 382 IETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRK 440
+ + TG + + +RAG T RL+++ + + + F R S R
Sbjct: 505 MNRAISTGNWSLKRF--RMERAGVTHVLSRLSYIAALGMLTRI--SSQFEKTRKVSGPRA 560
Query: 441 LLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVAS 474
L P +G LCP TP+GE CGL+ ++ + +
Sbjct: 561 LQPSQFGMLCPSDTPEGEACGLVKNLALMTHITT 594
>gi|156627827|gb|ABU88901.1| RNA polymerase II second largest subunit [Phymatotrichopsis
omnivora]
gi|156627829|gb|ABU88902.1| RNA polymerase II second largest subunit [Phymatotrichopsis
omnivora]
gi|156627831|gb|ABU88903.1| RNA polymerase II second largest subunit [Phymatotrichopsis
omnivora]
gi|156627833|gb|ABU88904.1| RNA polymerase II second largest subunit [Phymatotrichopsis
omnivora]
Length = 884
Score = 212 bits (539), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 219/798 (27%), Positives = 341/798 (42%), Gaps = 117/798 (14%)
Query: 184 LPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTT 243
+P+ IV +AL +D +I NH+ CYD + E + P + E I EV
Sbjct: 70 IPIVIVFRALGVVSDEDILNHV--CYD-RNDTEMLEMMKPCIEEAFVIQDREV------- 119
Query: 244 RLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDNND----KFNLLIFMLQK 299
L IG+ G+ E A +++ + H++ K L +M+ +
Sbjct: 120 ---ALDFIGKRGNS--QGVNKEKRIRYARDIMQKELLPHISQKEGSETRKAFFLGYMVHR 174
Query: 300 LFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFD 359
+ D+ D + + L G L+ + + ++ K ++ +E + K+F+
Sbjct: 175 MLQCALERREVDDRDHFGKKRLDLAGPLLAQLFRNLWKQLTKEVYKYLEKCVEGS-KEFN 233
Query: 360 FFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFIS 419
NLA +K S I T ++ L TG A+Q +AG + R F +S
Sbjct: 234 L-NLA-VK-------SNTITTGLKYSLATGNWASQKKA-ASSKAGVSQVLNRYTFASTLS 283
Query: 420 FFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMT--STCRVASYYD 477
R + G + R+L WG +CP TP+G+ CGL+ ++ S V + D
Sbjct: 284 HLRRTNTPIGRDG-KIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMSYITVGTPGD 342
Query: 478 SRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSS-EIEK 536
I DF R + L + P + ++G VG+ ++ +
Sbjct: 343 P---IVDFMAQRN-----------MEFLEEYEPQRSPNATKIFVNGVWVGIHRDPLQLVR 388
Query: 537 VVAHLRRLKVSA--ASVIPDDLEVGY-VPLSLGGAYPGLYLFTSPPKFVRPVRNI----- 588
V LRR V + SVI D + + + G L+ + P R + +
Sbjct: 389 TVQKLRRTGVISHEVSVIRDIRDREFKIFTDAGRVCRPLFAIDNDPTSERRGQLVLQKEH 448
Query: 589 --------SLPSEES---QNIELIGPFE-------QVFMEIRCPDG-------------- 616
SLP EE + + +G E + M + P+
Sbjct: 449 IERLEDDHSLPEEERFGWKGLLSVGAVEYLDAEEEETVMIVMTPEDLELSRQVQAGYEVA 508
Query: 617 --GDGGRRNAFPA-------THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTM 667
D G+R P TH EIHP+ +L + A++ P+ DHNQSPRN YQ M KQ M
Sbjct: 509 EETDMGKRVKAPINPATHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAM 568
Query: 668 GFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDA 727
G + R D L PQ P+ T + E P G NAIVA+L Y+GY+ ED+
Sbjct: 569 GVFLTNFAERMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDS 628
Query: 728 MILNKSSVDRGMCHGQIYQTETIDLSDDGNK-VDRGQKLFRRN--KDAKSLHSVIDSDGL 784
+I+N+SS+DRG+ Y++ G + V+ +K R N K + +D DGL
Sbjct: 629 VIMNQSSIDRGLFRSLFYRSYMDQEKRIGMQIVEEFEKPMRSNTLKLKHGTYDKLDEDGL 688
Query: 785 PYVGQ-------MIHPGEPYCSIYDKTTNSWRTNSR-------KGSESVFVDYVAVDMKN 830
G +I P D+ + +++ + +E+ VD V + N
Sbjct: 689 VAPGVRVSGEDIIIGKTAPIAPDLDEMGQRQKYHTKRDVSTPLRSTENGIVDQVML-TTN 747
Query: 831 SKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPH 890
++ L + +R R T+ P IGDKF+SRHGQKG + DMPF+ G+ PDLIINPH
Sbjct: 748 AEGL-KFVKVRMRTTKVPQIGDKFASRHGQKGTIGITYRMEDMPFT-CEGIVPDLIINPH 805
Query: 891 AFPSRMTIAMLLESVAAK 908
A PSRMTIA L+E +K
Sbjct: 806 AIPSRMTIAHLIECQLSK 823
>gi|325094900|gb|EGC48210.1| DNA-directed RNA polymerase III [Ajellomyces capsulatus H88]
Length = 1227
Score = 212 bits (539), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 120/298 (40%), Positives = 167/298 (56%), Gaps = 20/298 (6%)
Query: 628 THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
TH EI P +L VA L PY HNQSPRN YQC M KQ +G R D LY +
Sbjct: 745 THLEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGVIANNQFLRIDSLLYTMVY 804
Query: 688 PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
PQ P+V+T T D+ P G +A VAV++Y+GYD+EDA++LNK SVDRG Q+++
Sbjct: 805 PQKPMVKTRTIELIKYDKLPAGQSATVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRK 864
Query: 748 ETIDLSDDGNKV-DRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCS--IYDKT 804
+ +L N D+ + R N H+++D+DGL VG+ ++ GE Y + +
Sbjct: 865 YSTNLKSYSNGTKDKLKGPDRENGVPIRKHALLDNDGLAAVGEKVNYGEVYINKVTPENA 924
Query: 805 TNSWRTNSRKGS--------------ESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPII 850
+S T S G + ++D V + ++N Q ++ R TR P +
Sbjct: 925 LSSGITGSDAGRPIAYIPSPQTYKLPDPSYIDKVMISATEAEN--QLIKVQTRQTRVPEV 982
Query: 851 GDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
GDKFSSRHGQKGV + DMPFS + G+ PD+I+NPH FPSRMT+ +LE +A K
Sbjct: 983 GDKFSSRHGQKGVVGIIAEHADMPFSDL-GIVPDIIMNPHGFPSRMTVGKMLELIAGK 1039
Score = 91.7 bits (226), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 106/454 (23%), Positives = 183/454 (40%), Gaps = 56/454 (12%)
Query: 36 DHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVS 95
+ CR ++Y ++ D F+Y+ V R G+ PVML++ +C L ++
Sbjct: 182 NECRLRDMTYAAPILVD--FEYVRGRQRVKRNGTAIGRMPVMLRSSKCVLSNKSEAEMQL 239
Query: 96 LKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKD 155
L+E + GGYFI+NG E+ VIL ++ + V ++E RK
Sbjct: 240 LQECPLDPGGYFIVNGTEK----VILVQEQLSKNRVIVETDLKKEIVQASVTSSSNERKS 295
Query: 156 QSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKK 215
+S + LK R+ +P+ I+LKA+ +D E+ L D ++
Sbjct: 296 KSYIILK-------KDRIYMRHNVLSEDVPIVILLKAMGIQSDKEML-LLVAGIDSTFQ- 346
Query: 216 EKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHF----QPVIDGLQSESYYAVA 271
E I E L + T+ Q L++IG +P G+ ++ A
Sbjct: 347 -----------EDFAINFEESVKLGICTQHQALEYIGSRIKINRKPNSFGITRRNHVQEA 395
Query: 272 ETVIRDYIFVHLNDNNDKFN----LLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHL 327
I I H+ N F + M +++ S+ D+ D + N+ + L G L
Sbjct: 396 IEAISSVIISHVVVENLNFRPKALYVAHMARRVLMAKHDPSLVDDRDYVGNKRLELAGQL 455
Query: 328 ITIYLKEKLEDWLRKGKKLIQDEIENNGKK------FDFFNLANIKKVMEKNPSKQIGTS 381
+ + ED +K + I+ I+ KK FD + + I I
Sbjct: 456 LALL----FEDLFKKFQFDIKMNIDKVLKKPVRTEQFDAYGVVAIH-------GNHITQG 504
Query: 382 IETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRK 440
+ + TG + + +RAG T RL+++ + + + F R S R
Sbjct: 505 MNRAISTGNWSLKRF--RMERAGVTHVLSRLSYIAALGMLTRI--SSQFEKTRKVSGPRA 560
Query: 441 LLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVAS 474
L P +G LCP TP+GE CGL+ ++ + +
Sbjct: 561 LQPSQFGMLCPSDTPEGEACGLVKNLALMTHITT 594
>gi|225554621|gb|EEH02917.1| DNA-directed RNA polymerase III polypeptide [Ajellomyces capsulatus
G186AR]
Length = 1227
Score = 212 bits (539), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 120/298 (40%), Positives = 167/298 (56%), Gaps = 20/298 (6%)
Query: 628 THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
TH EI P +L VA L PY HNQSPRN YQC M KQ +G R D LY +
Sbjct: 745 THLEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIANNQFLRIDSLLYTMVY 804
Query: 688 PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
PQ P+V+T T D+ P G +A VAV++Y+GYD+EDA++LNK SVDRG Q+++
Sbjct: 805 PQKPMVKTRTIELIKYDKLPAGQSATVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRK 864
Query: 748 ETIDLSDDGNKV-DRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCS--IYDKT 804
+ +L N D+ + R N H+++D+DGL VG+ ++ GE Y + +
Sbjct: 865 YSTNLKSYSNGTKDKLKGPDRENGVPIRKHALLDNDGLAAVGEKVNHGEVYINKVTPENA 924
Query: 805 TNSWRTNSRKGS--------------ESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPII 850
+S T S G + ++D V + ++N Q ++ R TR P +
Sbjct: 925 LSSGITGSDAGRPIAYIPSPQTYKLPDPSYIDKVMISATEAEN--QLIKVQTRQTRVPEV 982
Query: 851 GDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
GDKFSSRHGQKGV + DMPFS + G+ PD+I+NPH FPSRMT+ +LE +A K
Sbjct: 983 GDKFSSRHGQKGVVGIIAEHADMPFSDL-GIVPDIIMNPHGFPSRMTVGKMLELIAGK 1039
Score = 90.9 bits (224), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 106/454 (23%), Positives = 183/454 (40%), Gaps = 56/454 (12%)
Query: 36 DHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVS 95
+ CR ++Y ++ D F+Y+ V R G+ PVML++ +C L ++
Sbjct: 182 NECRLRDMTYAAPILVD--FEYVRGRQRVKRNGTAIGRMPVMLRSSKCVLSNKSEAEMQL 239
Query: 96 LKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKD 155
L+E + GGYFI+NG E+ VIL ++ + V ++E RK
Sbjct: 240 LQECPLDPGGYFIVNGTEK----VILVQEQLSKNRVIVETDLKKEIVQASVTSSSNERKS 295
Query: 156 QSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKK 215
+S + LK R+ +P+ I+LKA+ +D E+ L D ++
Sbjct: 296 KSYIILK-------KDRIYMRHNVLSEDVPIVILLKAMGIQSDKEML-LLVAGIDSTFQ- 346
Query: 216 EKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHF----QPVIDGLQSESYYAVA 271
E I E L + T+ Q L++IG +P G+ ++ A
Sbjct: 347 -----------EDFAINFEESVKLGIYTQHQALEYIGSRIKINRKPNSFGITRRNHVQEA 395
Query: 272 ETVIRDYIFVHLNDNNDKFN----LLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHL 327
I I H+ N F + M +++ S+ D+ D + N+ + L G L
Sbjct: 396 IEAISSVIISHVVVENLNFRPKALYVAHMARRVLMAKHDPSLVDDRDYVGNKRLELAGQL 455
Query: 328 ITIYLKEKLEDWLRKGKKLIQDEIENNGKK------FDFFNLANIKKVMEKNPSKQIGTS 381
+ + ED +K + I+ I+ KK FD + + I I
Sbjct: 456 LALL----FEDLFKKFQFDIKMNIDKVLKKPVRTEQFDAYGVVAIH-------GNHITQG 504
Query: 382 IETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRK 440
+ + TG + + +RAG T RL+++ + + + F R S R
Sbjct: 505 MNRAISTGNWSLKRF--RMERAGVTHVLSRLSYIAALGMMTRI--SSQFEKTRKVSGPRA 560
Query: 441 LLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVAS 474
L P +G LCP TP+GE CGL+ ++ + +
Sbjct: 561 LQPSQFGMLCPSDTPEGEACGLVKNLALMTHITT 594
>gi|226287945|gb|EEH43458.1| DNA-directed RNA polymerase III subunit RPC2 [Paracoccidioides
brasiliensis Pb18]
Length = 1209
Score = 212 bits (539), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 120/298 (40%), Positives = 165/298 (55%), Gaps = 20/298 (6%)
Query: 628 THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
TH EI P +L VA L PY HNQSPRN YQC M KQ +G R D LY +
Sbjct: 765 THLEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIANNQFLRIDSLLYTMVY 824
Query: 688 PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
PQ P+V+T T D P G A VAV++Y+GYD+EDA++LNK S+DRG Q+++
Sbjct: 825 PQKPMVKTRTIELIKYDRLPAGQAATVAVMSYSGYDIEDALVLNKGSIDRGFGRCQVFRK 884
Query: 748 ETIDLSDDGNKV-DRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIY--DKT 804
+ +L N D+ + R N H+++D+DGL VG+ ++ GE Y + +
Sbjct: 885 YSTNLKSYSNGTKDKLKGPDRENGLPVRKHALLDNDGLAAVGEKVNHGEVYINKVTPENA 944
Query: 805 TNSWRTNSRKGS--------------ESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPII 850
+S T S G + ++D V + ++N Q ++ R TR P +
Sbjct: 945 LSSGITGSDAGRPITYIPSPQTYKLPDPSYIDKVMISSTEAEN--QLIKVQTRQTRRPEV 1002
Query: 851 GDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
GDKFSSRHGQKGV + DMPFS + G+ PD+I+NPH FPSRMT+ +LE VA K
Sbjct: 1003 GDKFSSRHGQKGVVGIIAEQADMPFSDL-GIVPDIIMNPHGFPSRMTVGKMLELVAGK 1059
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 111/453 (24%), Positives = 185/453 (40%), Gaps = 68/453 (15%)
Query: 36 DHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVS 95
+ CR ++Y ++ D F+Y+ V R G+ PVML++ +C L ++
Sbjct: 202 NECRLRDMTYASPILVD--FEYVRGRQRVKRNGTAIGRMPVMLRSSKCVLSNKSEAEMQL 259
Query: 96 LKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKD 155
L+E + GGYFI+NG E+ VIL ++ + V ++E RK
Sbjct: 260 LQECPLDPGGYFIVNGTEK----VILVQEQLSKNRVIVETDLKKEIVQASVTSSSNERKS 315
Query: 156 QSSVTLK------LYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY 209
+S + LK + +LN V P+ I+LKA+ +D E+ L
Sbjct: 316 KSYIILKKERIYVRHNVLNEDV-------------PIVILLKAMGIQSDKEML-LLVAGI 361
Query: 210 DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHF----QPVIDGLQSE 265
D Y+ E I E L + T+ Q L++IG +P G+
Sbjct: 362 DSTYQ------------EDFAINFEEAVKLGIYTQHQALEYIGSRIKINRKPNNFGVIRR 409
Query: 266 SYYAVAETVIRDYIFVHLNDNNDKFN---LLIFMLQKLFSLVDHT-SVSDNPDSLQNQEI 321
+Y A I I H+ N F L + + + + H S+ D+ D + N+ +
Sbjct: 410 NYVQEAIEAISSVIISHVVVENLNFRPKALYVAHMARRVLMAKHDPSLVDDRDYVGNKRL 469
Query: 322 LLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKK------FDFFNLANIKKVMEKNPS 375
L G L+++ ED +K + I+ I+ KK FD + + I
Sbjct: 470 ELAGQLLSLL----FEDLFKKFQFDIKMNIDKVLKKPVRTEQFDAYGVVAIH-------G 518
Query: 376 KQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRT 435
I + + TG + + +RAG T RL+++ + + + F R
Sbjct: 519 NHITQGMNRAISTGNWSLKRF--RMERAGVTHVLSRLSYIAALGMMTRI--SSQFEKTRK 574
Query: 436 TS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMT 467
S R L P +G LCP TP+GE CGL+ ++
Sbjct: 575 VSGPRALQPSQFGMLCPSDTPEGEACGLVKNLA 607
>gi|225678942|gb|EEH17226.1| DNA-directed RNA polymerase III subunit RPC2 [Paracoccidioides
brasiliensis Pb03]
Length = 1232
Score = 211 bits (538), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 120/298 (40%), Positives = 165/298 (55%), Gaps = 20/298 (6%)
Query: 628 THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
TH EI P +L VA L PY HNQSPRN YQC M KQ +G R D LY +
Sbjct: 765 THLEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIANNQFLRIDSLLYTMVY 824
Query: 688 PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
PQ P+V+T T D P G A VAV++Y+GYD+EDA++LNK S+DRG Q+++
Sbjct: 825 PQKPMVKTRTIELIKYDRLPAGQAATVAVMSYSGYDIEDALVLNKGSIDRGFGRCQVFRK 884
Query: 748 ETIDLSDDGNKV-DRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCS--IYDKT 804
+ +L N D+ + R N H+++D+DGL VG+ ++ GE Y + +
Sbjct: 885 YSTNLKSYSNGTKDKLKGPDRENGLPVRKHALLDNDGLAAVGEKVNHGEVYINKVTPENA 944
Query: 805 TNSWRTNSRKGS--------------ESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPII 850
+S T S G + ++D V + ++N Q ++ R TR P +
Sbjct: 945 LSSGITGSDAGRPITYIPSPQTYKLPDPSYIDKVMISSTEAEN--QLIKVQTRQTRRPEV 1002
Query: 851 GDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
GDKFSSRHGQKGV + DMPFS + G+ PD+I+NPH FPSRMT+ +LE VA K
Sbjct: 1003 GDKFSSRHGQKGVVGIIAEQADMPFSDL-GIVPDIIMNPHGFPSRMTVGKMLELVAGK 1059
Score = 94.4 bits (233), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 110/453 (24%), Positives = 184/453 (40%), Gaps = 68/453 (15%)
Query: 36 DHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVS 95
+ CR ++Y ++ D F+Y+ V R G+ PVML++ +C L ++
Sbjct: 202 NECRLRDMTYASPILVD--FEYVRGRQRVKRNGTAIGRMPVMLRSSKCVLSNKSEAEMQL 259
Query: 96 LKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKD 155
L+E + GGYFI+NG E+ VIL ++ + V ++E RK
Sbjct: 260 LQECPLDPGGYFIVNGTEK----VILVQEQLSKNRVIVETDLKKEIVQASVTSSSNERKS 315
Query: 156 QSSVTLK------LYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY 209
+S + LK + +LN V P+ I+LKA+ +D E+ L
Sbjct: 316 KSYIILKKERIYVRHNVLNEDV-------------PIVILLKAMGIQSDKEML-LLVAGI 361
Query: 210 DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHF----QPVIDGLQSE 265
D Y+ E I E L + T+ Q L++IG +P G+
Sbjct: 362 DSTYQ------------EDFAINFEEAVKLGIYTQHQALEYIGSRIKINRKPNNFGVIRR 409
Query: 266 SYYAVAETVIRDYIFVHLNDNNDKFN----LLIFMLQKLFSLVDHTSVSDNPDSLQNQEI 321
+Y A I I H+ N F + M +++ S+ D+ D + N+ +
Sbjct: 410 NYVQEAIEAISSVIISHVVVENLNFRPKALYVAHMARRVLMAKHDPSLVDDRDYVGNKRL 469
Query: 322 LLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKK------FDFFNLANIKKVMEKNPS 375
L G L+++ ED +K + I+ I+ KK FD + + I
Sbjct: 470 ELAGQLLSLL----FEDLFKKFQFDIKMNIDKVLKKPVRTEQFDAYGVVAIH-------G 518
Query: 376 KQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRT 435
I + + TG + + +RAG T RL+++ + + + F R
Sbjct: 519 NHITQGMNRAISTGNWSLKRF--RMERAGVTHVLSRLSYIAALGMMTRI--SSQFEKTRK 574
Query: 436 TS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMT 467
S R L P +G LCP TP+GE CGL+ ++
Sbjct: 575 VSGPRALQPSQFGMLCPSDTPEGEACGLVKNLA 607
>gi|196011451|ref|XP_002115589.1| hypothetical protein TRIADDRAFT_59462 [Trichoplax adhaerens]
gi|190581877|gb|EDV21952.1| hypothetical protein TRIADDRAFT_59462 [Trichoplax adhaerens]
Length = 1016
Score = 211 bits (537), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 191/641 (29%), Positives = 285/641 (44%), Gaps = 88/641 (13%)
Query: 308 SVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLA--- 364
S+ D+ D N+ + L G L+ + ++ + + + K + + I NL
Sbjct: 241 SILDDKDYYGNKRLELAGQLLALLFEDLFKKFNSELKSIAEKNIPKQRAGPVNMNLRFLE 300
Query: 365 -NIKKVMEKNPSKQIGTSIETMLKTGRLATQT-GLDLQQRAGYTVQAERLNFLRFISFFR 422
+I K M ++ QI L TG + + +D RAG T RL++L +
Sbjct: 301 FDIVKYMRQD---QITNGFNLALTTGNWSIKRYKMD---RAGVTQVLSRLSYLSALGMMT 354
Query: 423 AVHRGASFAGLRTTS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGN 481
+ + F R S R L P WG LCP TP+GE CGL+ ++ + + D +
Sbjct: 355 RI--SSQFEKTRKVSGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTDSDDKII 412
Query: 482 IRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGV------------- 528
I + + +L G + SLP + V ++G V+G
Sbjct: 413 INLLFNLGVEDINLLSGEEL--SLPH--------IYIVYVNGYVLGAARNYKKLIRTFRL 462
Query: 529 ----IPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSL-GGAYPGLYLFTSPPKFVR 583
I ++++++++ + S+ P+ + ++L GG Y+ K
Sbjct: 463 LRRDIKTAQVKRILYLIANYINEFVSIYPNH-TYRQINIALDGGRVCRPYIIVKSEK--- 518
Query: 584 PVRNISLPSEESQNIELIGPFEQ--------VFMEIRCPDGGDGGRRNAFPATHEEIHPT 635
P+ I E SQ I F + V E C N+ TH +I P
Sbjct: 519 PLVTIKHIEELSQGIRSFDDFIRNGLIEYLDVNEENDCNIALYESDINS-KTTHLDIEPF 577
Query: 636 GMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRT 695
+L V A L P+ HNQSPRN YQC M KQ +G + R D LY L PQ P+V+T
Sbjct: 578 TILGVCAGLIPFPHHNQSPRNTYQCAMGKQAIGTIGYNQRNRIDTVLYQLVYPQVPLVKT 637
Query: 696 NTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRG-----MCHGQIYQTETI 750
T D+ P G NAI+AV++Y+GYD+EDA+ILNK+SVDRG I++ + +
Sbjct: 638 KTIDLIEFDKLPAGQNAIIAVMSYSGYDIEDAVILNKASVDRGPQADAQTGKTIWKHKVL 697
Query: 751 D---LSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNS 807
D + G KV+ Q L KS+ SV S + GQ + E Y +
Sbjct: 698 DADGICMPGEKVESKQILIN-----KSIPSVT-STPIAGTGQKLLQPE-----YIDMPMT 746
Query: 808 WRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQL 867
+R G +V+ V + N + K R +R P IGDKFSSRHGQKGVC +
Sbjct: 747 YR-----GPTDAYVENVMISSNNDEAFLIKT--LLRSSRRPEIGDKFSSRHGQKGVCGLI 799
Query: 868 WPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
DMPF+ D I+NPH FPSRMT+ L+E + K
Sbjct: 800 VNQEDMPFT-------DQIMNPHGFPSRMTVGKLMEVIGGK 833
Score = 53.1 bits (126), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Query: 37 HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
CR ++Y+ ++ D+E Y + R++ G+ PVML++ C L G +L
Sbjct: 106 ECRLRDLTYSAPIVVDIE--YTRGAQRIRRQKLPIGRVPVMLRSSICVLNGKSPVELAKY 163
Query: 97 KEEAAEMGGYFILNGLERVF 116
E + GGYFI+ G+E+V
Sbjct: 164 NECPIDPGGYFIVKGVEKVI 183
>gi|520515|gb|AAA50228.1| RNA polymerase II, second largest subunit, partial [Helobdella
stagnalis]
Length = 859
Score = 211 bits (536), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 215/784 (27%), Positives = 338/784 (43%), Gaps = 121/784 (15%)
Query: 184 LPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAE---VQDLS 240
+P+ IV +AL +D +I H+ +D+ P + E VK + E VQD
Sbjct: 74 IPIIIVFRALGFVSDRDILEHIIYDFDD-----------PEMMEMVKPSIDEAFCVQDQP 122
Query: 241 LTTRLQCLQHIG-EHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIF 295
+ L IG +P G+ E A+ +++ + H+ ++ K L +
Sbjct: 123 V-----ALNFIGGRGSRP---GVTREKRIKYAKEILQKEMLPHVGISDFCETRKAYFLGY 174
Query: 296 MLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNG 355
M+ +L D+ D N+ + L G L+ YL L L K +L + + G
Sbjct: 175 MVHRLLLAALGRREVDDRDHYGNKRLDLAGPLLA-YLFRGLFRNLSKEIRLYAQKFIDRG 233
Query: 356 KKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFL 415
K F+ LA IK ++ I ++ L TG Q Q RAG + RL F
Sbjct: 234 KDFNL-ELA-IK-------TRTITDGLKYSLATGNWGDQKKAH-QARAGVSQVLNRLTFA 283
Query: 416 RFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASY 475
+S R ++ G + R+L WG +CP TP+G GL+ ++
Sbjct: 284 STLSHLRRLNSPIGRDG-KLARPRQLHNTLWGMICPAETPEGCAVGLVKNLA-------- 334
Query: 476 YDSRGNIRDFSKMRTSILRVLIGVGMIPS----------LPKLVKSGPPAVLS---VLLD 522
L I VG PS + L + P A++ + ++
Sbjct: 335 -----------------LMAYISVGSQPSPILEFLEEWSMENLEEISPSAIMDATRIFVN 377
Query: 523 GRVVGVIPSSEIEKVVAHLRRLK------VSAASVIPDDLEVGYVPLSLGGAYPGLYLFT 576
G VG+ + E+++ L++L+ VS SVI D + + G L
Sbjct: 378 GCWVGI--HRDPEQLMNTLKKLRRQMDIIVSEVSVIRDIRDREIRIYTDAGRICRPLLIV 435
Query: 577 SPPKFVRPVRNISLPSEESQN------------IELIGPFEQ--VFMEIRCPDGGDGGRR 622
K + R+I L E N +E I E+ V + + D + G +
Sbjct: 436 ENQKLLLKKRHIDLLKEREYNNYSWQDLVANGVVEYIDTMEEETVMLAMTPEDFIEKGGQ 495
Query: 623 NAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKL 682
TH EIHP+ +L + A++ P+ DHNQSPRN YQ M KQ MG + R D
Sbjct: 496 YCSTYTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNYHVRMDTLA 555
Query: 683 YHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHG 742
+ L PQ P+V T + E P G N+I A+ +YTGY+ ED++I+N+S+VDRG
Sbjct: 556 HVLFYPQKPLVTTRSMEYLKFRELPAGINSITAIASYTGYNQEDSVIMNESAVDRGFFRS 615
Query: 743 QIYQT----ETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGL-----------PYV 787
Y++ E+ D ++ + + + A S + +D DG+ V
Sbjct: 616 VFYRSYKDAESKKGFDQEEVFEKPDRSYVQGMRANS-YDKLDDDGIISPGTRVSGDDALV 674
Query: 788 GQMIHPGEPYCSIYDKTTNSWRTNSR---KGSESVFVDYVAVDMKNSKNLPQKANIRFRH 844
G+ I E + + + + + SE+ V V V + +++ + IR R
Sbjct: 675 GKTISLPENEDELEGQARRYTKRDCSVFMRKSETGVVGQVMVTI--NQDGFKFTKIRVRT 732
Query: 845 TRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLES 904
+ P IGDKF+SRHGQKG C + DMPF+ G+ PD+IINPHA PSRMT+ L+E
Sbjct: 733 VKTPQIGDKFASRHGQKGTCGMRYRQEDMPFTA-EGITPDIIINPHAIPSRMTVGHLIEC 791
Query: 905 VAAK 908
+ K
Sbjct: 792 LQGK 795
>gi|303319249|ref|XP_003069624.1| DNA-directed RNA polymerase III, putative [Coccidioides posadasii
C735 delta SOWgp]
gi|240109310|gb|EER27479.1| DNA-directed RNA polymerase III, putative [Coccidioides posadasii
C735 delta SOWgp]
gi|320040958|gb|EFW22891.1| DNA-directed RNA polymerase 3 subunit RPC2 [Coccidioides posadasii
str. Silveira]
Length = 1197
Score = 211 bits (536), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 120/298 (40%), Positives = 164/298 (55%), Gaps = 20/298 (6%)
Query: 628 THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
TH EI P +L VA L PY HNQSPRN YQC M KQ +G R D LY +
Sbjct: 715 THLEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIANNQFLRIDSLLYTMVY 774
Query: 688 PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
PQ P+V+T T D+ P G +A VAV++Y+GYD+EDA++LNK SVDRG Q+++
Sbjct: 775 PQKPMVKTRTIELVKYDKLPAGQSATVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRK 834
Query: 748 ETIDLSDDGNKV-DRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYC--SIYDKT 804
+ +L N DR R++ H+++D+DGL VG+ + GE Y + +
Sbjct: 835 YSANLKSYSNGTKDRLLGPDRQDGVPIRKHALLDNDGLAAVGEKVSSGEVYINKATPENA 894
Query: 805 TNSWRTNSRKGS--------------ESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPII 850
+S T S G + ++D V + +N Q ++ R TR P +
Sbjct: 895 LSSGITGSDAGGPIAYIPSPQTYKLPDPSYIDKVMISTTEGEN--QLLKVQTRQTRRPEV 952
Query: 851 GDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
GDKFSSRHGQKGV + DMPF+ G+ PD+I+NPH FPSRMT+ +LE VA K
Sbjct: 953 GDKFSSRHGQKGVVGIIAEQADMPFTD-QGIVPDIIMNPHGFPSRMTVGKMLELVAGK 1009
Score = 96.7 bits (239), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 115/458 (25%), Positives = 191/458 (41%), Gaps = 78/458 (17%)
Query: 36 DHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVS 95
+ CR ++Y ++ D F+Y+ V R G+ PVML++ +C L +++
Sbjct: 152 NECRLRDMTYAAPILVD--FEYVRGRQRVKRNGTAIGRMPVMLRSSKCVLSKKSPREMYL 209
Query: 96 LKEEAAEMGGYFILNGLERVF--------RSVIL---PKQNYPMSMVRSSFRDRREGYTD 144
L E + GGYFI+NG E+V VI+ PK+ + V SS +R+
Sbjct: 210 LHECPLDPGGYFIVNGTEKVILVQEQLSKNRVIVETDPKKEIVQASVTSSSNERK----S 265
Query: 145 KAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNH 204
K+ VI ++KD+ + L+ L + +PV I+LKA+ +D E+
Sbjct: 266 KSYVI--LKKDR--IYLRHNVLSDD--------------IPVVILLKAMGIQSDKEML-L 306
Query: 205 LTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHF----QPVID 260
L D Y+ E I E L + T+ Q L+++G H +P
Sbjct: 307 LVAGVDSVYQ------------EDFAINFEESIKLGIYTQQQALEYLGSHIKITRKPNGF 354
Query: 261 GLQSESYYAVAETVIRDYIFVHLNDNNDKFN----LLIFMLQKLFSLVDHTSVSDNPDSL 316
G +Y A I I H+ N F + M +++ +S+ D+ D +
Sbjct: 355 GGGRRNYIQEAVEAIASVIISHVQVENMNFRPKALYVAHMARRVLMAKHDSSLVDDRDYV 414
Query: 317 QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKK------FDFFNLANIKKVM 370
N+ + L G L+ + ED +K I+ I+ KK FD F++ I
Sbjct: 415 GNKRLELAGQLLALL----FEDLFKKFCFDIKMNIDKVLKKPVRTEAFDAFSVVAIH--- 467
Query: 371 EKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASF 430
I + + TG + + +RAG T RL+++ + + + F
Sbjct: 468 ----GNHITQGMNRAISTGNWSLKRF--RMERAGVTHVLSRLSYISALGMMTRI--SSQF 519
Query: 431 AGLRTTS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMT 467
R S R L P +G LCP TP+GE CGL+ ++
Sbjct: 520 EKTRKVSGPRALQPSQFGMLCPSDTPEGEACGLVKNLA 557
>gi|391870940|gb|EIT80109.1| RNA polymerase III, second largest subunit [Aspergillus oryzae
3.042]
Length = 1008
Score = 211 bits (536), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 121/298 (40%), Positives = 163/298 (54%), Gaps = 20/298 (6%)
Query: 628 THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
TH EI P +L VA L PY HNQSPRN YQC M KQ +G R D LY +
Sbjct: 526 THLEIEPFTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIASNQFLRIDSILYLMVY 585
Query: 688 PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
PQ P+V++ T D+ P G NA+VAV++Y+GYD+EDA++LNK SVDRG Q+++
Sbjct: 586 PQKPMVKSRTIELTKYDQLPAGHNAMVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFKK 645
Query: 748 ETIDLSDDGNKVDRGQKLFRRNKDAK-SLHSVIDSDGLPYVGQMIHPGEPYC--SIYDKT 804
+L N + DA H++++SDGL VG+ ++ GE Y S D++
Sbjct: 646 SVANLKSYSNGTKDILMPPEYDNDAPIRKHALLESDGLAAVGEQVNAGEVYINKSTPDQS 705
Query: 805 TNSWRTNSRKG--------------SESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPII 850
S S G + ++D V V ++N Q + R TR P +
Sbjct: 706 LASGFPGSDMGRPVKYTPTPMTYKLHDPAYIDQVLVSTTENEN--QLIKVLTRQTRRPEV 763
Query: 851 GDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
GDKFSSRHGQKGV + DMPF+ G+ PD+I+NPH FPSRMT+ +LE VA K
Sbjct: 764 GDKFSSRHGQKGVVGIIADQADMPFTD-QGINPDIIMNPHGFPSRMTVGKMLELVAGK 820
Score = 78.2 bits (191), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 102/427 (23%), Positives = 178/427 (41%), Gaps = 57/427 (13%)
Query: 74 FPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRS 133
PVML++ +C L ++ L E + GGYFI+NG E+ VIL ++ + +
Sbjct: 1 MPVMLRSSKCVLSDKTPAEMTVLDECPLDPGGYFIVNGTEK----VILVQEQLSKNRIIV 56
Query: 134 SFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKAL 193
++E RK +S + LK L V+ + +P+ I+LKA+
Sbjct: 57 ETDPKKEIVQASVTSSSNERKSKSYIVLKKDKLY---VKHNVLSED----IPIVILLKAM 109
Query: 194 VDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGE 253
D E+ L D+ Y+ E I E L + T+ Q L IG
Sbjct: 110 GIHTDKEML-LLVAGIDKVYQ------------EDFAINFEEAIKLGIYTQQQALDWIGS 156
Query: 254 HFQPVIDGLQS--------ESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVD 305
+ + G Q+ E+ A+A +I +I V + K + M +++ +
Sbjct: 157 RIK-INRGKQNNYRRTHVQEAVEAIASVII-SHIEVKDMNFRPKAVYVAHMARRVLMAKN 214
Query: 306 HTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRK---GKKLIQDEIENNGKKFDFFN 362
S+ D+ D L N+ + L G L+ + ED +K K+ D++ N + + F+
Sbjct: 215 DPSLVDDRDYLGNKRLELAGQLLALL----FEDLFKKFCFDIKMNVDKVLNKRNRAEAFD 270
Query: 363 LANIKKVMEKNPSKQIGTSIET---MLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFIS 419
+ + + ++ + +I T LK R+ +RAG T RL+++ +
Sbjct: 271 AWTVMSMHSNHITQGMNRAISTGNWSLKRFRM---------ERAGVTHVLSRLSYIAALG 321
Query: 420 FFRAVHRGASFAGLRTTS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDS 478
+ + F R S R L P +G LC TP+GE CGL+ ++ + + D
Sbjct: 322 MMTRI--SSQFEKTRKVSGPRALQPSQFGMLCLADTPEGEACGLVKNLALMTHITT-NDE 378
Query: 479 RGNIRDF 485
G IR+
Sbjct: 379 EGPIRNL 385
>gi|119182523|ref|XP_001242390.1| hypothetical protein CIMG_06286 [Coccidioides immitis RS]
gi|392865284|gb|EAS31067.2| DNA-directed RNA polymerase III polypeptide [Coccidioides immitis RS]
Length = 1233
Score = 211 bits (536), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 120/298 (40%), Positives = 164/298 (55%), Gaps = 20/298 (6%)
Query: 628 THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
TH EI P +L VA L PY HNQSPRN YQC M KQ +G R D LY +
Sbjct: 751 THLEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIANNQFLRIDSLLYTMVY 810
Query: 688 PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
PQ P+V+T T D+ P G +A VAV++Y+GYD+EDA++LNK SVDRG Q+++
Sbjct: 811 PQKPMVKTRTIELVKYDKLPAGQSATVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRK 870
Query: 748 ETIDLSDDGNKV-DRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYC--SIYDKT 804
+ +L N DR R++ H+++D+DGL VG+ + GE Y + +
Sbjct: 871 YSANLKSYSNGTKDRLLGPDRQDGVPIRKHALLDNDGLAAVGEKVSSGEVYINKATPENA 930
Query: 805 TNSWRTNSRKGS--------------ESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPII 850
+S T S G + ++D V + +N Q ++ R TR P +
Sbjct: 931 LSSGITGSDAGGPIAYIPSPQTYKLPDPSYIDKVMISTTEGEN--QLLKVQTRQTRRPEV 988
Query: 851 GDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
GDKFSSRHGQKGV + DMPF+ G+ PD+I+NPH FPSRMT+ +LE VA K
Sbjct: 989 GDKFSSRHGQKGVVGIIAEQADMPFTD-QGIVPDIIMNPHGFPSRMTVGKMLELVAGK 1045
Score = 97.1 bits (240), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 115/458 (25%), Positives = 191/458 (41%), Gaps = 78/458 (17%)
Query: 36 DHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVS 95
+ CR ++Y ++ D F+Y+ V R G+ PVML++ +C L +++
Sbjct: 188 NECRLRDMTYAAPILVD--FEYVRGRQRVKRNGTAIGRMPVMLRSSKCVLSKKSPREMYL 245
Query: 96 LKEEAAEMGGYFILNGLERVF--------RSVIL---PKQNYPMSMVRSSFRDRREGYTD 144
L E + GGYFI+NG E+V VI+ PK+ + V SS +R+
Sbjct: 246 LHECPLDPGGYFIVNGTEKVILVQEQLSKNRVIVETDPKKEIVQASVTSSSNERK----S 301
Query: 145 KAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNH 204
K+ VI ++KD+ + L+ L + +PV I+LKA+ +D E+
Sbjct: 302 KSYVI--LKKDR--IYLRHNVLSDD--------------IPVVILLKAMGIQSDKEML-L 342
Query: 205 LTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHF----QPVID 260
L D Y+ E I E L + T+ Q L+++G H +P
Sbjct: 343 LVAGVDSVYQ------------EDFAINFEESIKLGIYTQQQALEYLGSHIKITRKPNGF 390
Query: 261 GLQSESYYAVAETVIRDYIFVHLNDNNDKFN----LLIFMLQKLFSLVDHTSVSDNPDSL 316
G +Y A I I H+ N F + M +++ +S+ D+ D +
Sbjct: 391 GGGRRNYIQEAVEAIASVIISHVQVENMNFRPKALYVAHMARRVLMAKHDSSLVDDRDYV 450
Query: 317 QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKK------FDFFNLANIKKVM 370
N+ + L G L+ + ED +K I+ I+ KK FD F++ I
Sbjct: 451 GNKRLELAGQLLALL----FEDLFKKFCFDIKMNIDKVLKKPVRTEAFDAFSVVAIH--- 503
Query: 371 EKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASF 430
I + + TG + + +RAG T RL+++ + + + F
Sbjct: 504 ----GNHITQGMNRAISTGNWSLKRF--RMERAGVTHVLSRLSYISALGMMTRI--SSQF 555
Query: 431 AGLRTTS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMT 467
R S R L P +G LCP TP+GE CGL+ ++
Sbjct: 556 EKTRKVSGPRALQPSQFGMLCPSDTPEGEACGLVKNLA 593
>gi|344303893|gb|EGW34142.1| DNA-directed RNA polymerase [Spathaspora passalidarum NRRL Y-27907]
Length = 1155
Score = 210 bits (535), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 123/305 (40%), Positives = 162/305 (53%), Gaps = 22/305 (7%)
Query: 623 NAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKL 682
N+ P TH EI P +L VA L PY HNQSPRN YQC M KQ +G R D L
Sbjct: 672 NSVPTTHLEIEPFTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFRRIDTLL 731
Query: 683 YHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHG 742
Y + PQ P+V+T T D+ P G NA VAV++Y+GYD+EDA++LNK+S+DRG
Sbjct: 732 YFMVYPQQPMVKTKTIELIDYDKLPAGQNATVAVMSYSGYDIEDALVLNKASIDRGFGRC 791
Query: 743 QIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSL--HSVIDSDGLPYVGQMIHPGEPYCSI 800
Q+ + TI L N R ++ + H + DGL VG I G+ Y +
Sbjct: 792 QVVRKNTIQLKRYPNHTKDILSGMRVDEHGNPIFPHQALGPDGLGEVGARIENGQIYANK 851
Query: 801 YDKTT--------NSWRTNSR---------KGSESVFVDYVAVDMKNSKNLPQKANIRFR 843
+ T S TN KG E +VD V M S N + R
Sbjct: 852 FVPTNAGESALGGASEPTNVESHRETPAYYKGPEPSYVDQVM--MSVSDNDQALIKVLLR 909
Query: 844 HTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLE 903
TR P +GDKFSSRHGQKGVC + D+PF+ + G+ PD+I+NPH FPSRMT+ ++E
Sbjct: 910 QTRRPELGDKFSSRHGQKGVCGIIVQQEDLPFNDM-GISPDIIMNPHGFPSRMTVGKMIE 968
Query: 904 SVAAK 908
++ K
Sbjct: 969 LISGK 973
Score = 105 bits (261), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 116/520 (22%), Positives = 214/520 (41%), Gaps = 98/520 (18%)
Query: 9 FEPLRELVRHHIESFDYMLDEGLSEMFD-------------------------------- 36
F ++ LV+ H++SF+Y +D L ++
Sbjct: 48 FLKVKGLVKQHLDSFNYFVDTDLKKIIKANELVLSDVDPEFYLKYLDIRVGHRSKTPNDK 107
Query: 37 -------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGAD 89
CR ++Y+ + DVE Y +V G+ P+ML++ +C L GAD
Sbjct: 108 LVLMPPHQCRLRDLTYSAPIFVDVE--YTRGRKIIVHTDLEIGRMPIMLRSNKCILDGAD 165
Query: 90 SQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVI 149
+ E + GGYFI+NG E+V +++ +Q ++ + D ++G +V
Sbjct: 166 DNTMARYDECPLDPGGYFIVNGTEKV---ILVQEQLSKNRIIVEA--DEKKGIVQASVTS 220
Query: 150 RC-VRKDQSSVTLK--LYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLT 206
RK ++ V K YL + S+ +P+ I+LKA T+DLEI L
Sbjct: 221 STHERKSKTYVITKNDKIYLKHNSISED---------IPIVIILKAAGITSDLEIL-QLV 270
Query: 207 CCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQ-------PVI 259
C D Y+ + + E L + T+ Q L ++G+ + P +
Sbjct: 271 CGSDPNYQ------------DLFVVNFEEAARLEVFTQQQALNYVGKRVKTIRRAGAPKL 318
Query: 260 DGLQSESYYAVAETVIRDYIFVHLNDNNDKFN----LLIFMLQKLFSLVDHTSVSDNPDS 315
LQ E A+A T+I HL ++ +F + M +++ + + ++ D+ D
Sbjct: 319 SQLQ-EGIEAIATTII-----AHLTVSDLQFKEKALYIATMARRVIMTMHNPTMVDDRDY 372
Query: 316 LQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPS 375
+ N+ + L G L+++ ++ + + K I ++ + +F L +I S
Sbjct: 373 VGNKRLELAGQLMSLLFEDLFKKFNSDFKANIDKVLKKPSRTSEFDALLSINI-----HS 427
Query: 376 KQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRT 435
I + + TG + + +RAG T RL+++ + + + F R
Sbjct: 428 NNITMGLNRAISTGNWSLKRF--KMERAGVTHVLSRLSYISALGMMTRI--SSQFEKSRK 483
Query: 436 TS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVAS 474
S R L P +G LC TP+GE CGL+ ++ + +
Sbjct: 484 VSGPRALQPSQFGMLCTSDTPEGEACGLVKNLALMTHITT 523
>gi|126132998|ref|XP_001383024.1| DNA-directed RNA polymerase III [Scheffersomyces stipitis CBS 6054]
gi|126094849|gb|ABN64995.1| DNA-directed RNA polymerase III [Scheffersomyces stipitis CBS 6054]
Length = 1155
Score = 210 bits (535), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 121/302 (40%), Positives = 161/302 (53%), Gaps = 22/302 (7%)
Query: 626 PATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHL 685
P TH EI P +L VA L PY HNQSPRN YQC M KQ +G R D LY +
Sbjct: 675 PVTHLEIEPFTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFRRIDTLLYFM 734
Query: 686 QTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIY 745
PQ P+V+T T D+ P G NA VAV++Y+GYD+EDA++LNKSS+DRG Q+
Sbjct: 735 VYPQQPMVKTKTIELIDYDKLPAGQNATVAVMSYSGYDIEDALVLNKSSIDRGFGRCQVV 794
Query: 746 QTETIDLSDDGNKVDRGQKLFRRNKDAKSL--HSVIDSDGLPYVGQMIHPGEPYCSIYDK 803
+ TI L N R ++D + + H + DGL +G + G+ Y + +
Sbjct: 795 RKNTIQLKRYPNHTKDIVSGMRVDEDGEPIFPHKALGPDGLGEIGARVENGQVYANKFVP 854
Query: 804 T---------------TNSWRTNSR--KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTR 846
T S R + KG E +VD V M S N + R TR
Sbjct: 855 TNAGESVLGHNEQMAGAESHREAAAYYKGPEPSYVDQVM--MSVSDNDQALIKVLLRQTR 912
Query: 847 NPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVA 906
P +GDKFSSRHGQKGVC + D+PF+ G+ PD+I+NPH FPSRMT+ ++E ++
Sbjct: 913 RPELGDKFSSRHGQKGVCGIIVQQEDLPFND-DGISPDIIMNPHGFPSRMTVGKMIELIS 971
Query: 907 AK 908
K
Sbjct: 972 GK 973
Score = 99.4 bits (246), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 113/517 (21%), Positives = 213/517 (41%), Gaps = 91/517 (17%)
Query: 9 FEPLRELVRHHIESFDYMLDEGLSEMF--------------------------------- 35
F ++ LV+ H++SF+Y +D L ++
Sbjct: 48 FLKVKGLVKQHLDSFNYFVDVDLKKIIRANELVLSDVDPEFYLKYLDIRVGHKSSSAPGT 107
Query: 36 -------DHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGA 88
CR ++Y+ + DVE Y ++ + G+ PVML++ +C L G
Sbjct: 108 KEVILPPHECRLRDLTYSAPIYVDVE--YTRGRKIIMHKDLEIGRMPVMLRSNKCILDGI 165
Query: 89 DSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVV 148
+ +++ E + GGYF++NG E+V +++ +Q ++ + D ++G +V
Sbjct: 166 NDKQMAKFDECPLDPGGYFVVNGTEKV---ILVQEQLSKNRIIVEA--DEKKGIVQASVT 220
Query: 149 IRC-VRKDQSSVTLK--LYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHL 205
RK ++ V K YL + S+ +P+ IVLKA T+DLEI L
Sbjct: 221 SSTHERKSKTYVITKNDKIYLKHNSISED---------IPIVIVLKAAGITSDLEIL-QL 270
Query: 206 TCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPV------- 258
C D +Y+ + + E L + T+ Q L ++G+ + +
Sbjct: 271 VCGSDPQYQ------------DLFVVNFEEAAKLEVFTQQQALNYVGKRVKTIRRAGAAK 318
Query: 259 IDGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQN 318
+ LQ E A+A TVI L +K + M +++ + + + D+ D + N
Sbjct: 319 LSVLQ-EGIEAIATTVIAHITVADLQ-FREKALYIATMARRVVMTMHNPKMVDDRDYVGN 376
Query: 319 QEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQI 378
+ + L G L+++ ++ + + K I ++ + +F L +I S I
Sbjct: 377 KRLELAGQLMSLLFEDLFKKFNSDFKANIDKILKKPSRTSEFDALLSINI-----HSNNI 431
Query: 379 GTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS- 437
+ + TG + + +RAG T RL+++ + + + F R S
Sbjct: 432 TMGLNRAISTGNWSLKRF--KMERAGVTHVLSRLSYISALGMMTRI--SSQFEKSRKVSG 487
Query: 438 VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVAS 474
R L P +G LC TP+GE CGL+ ++ + +
Sbjct: 488 PRALQPSQFGMLCTSDTPEGEACGLVKNLALMTHITT 524
>gi|67516079|ref|XP_657925.1| hypothetical protein AN0321.2 [Aspergillus nidulans FGSC A4]
gi|40746571|gb|EAA65727.1| hypothetical protein AN0321.2 [Aspergillus nidulans FGSC A4]
Length = 1656
Score = 210 bits (534), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 118/299 (39%), Positives = 165/299 (55%), Gaps = 22/299 (7%)
Query: 628 THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
TH EI P +L VA L PY HNQSPRN YQC M KQ +G R D LY +
Sbjct: 1174 THMEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIASNQFLRIDSILYLMVY 1233
Query: 688 PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
PQ P+V++ T D+ P G NA VAV++Y+GYD+EDA++LNK SVDRG Q+++
Sbjct: 1234 PQKPMVKSRTIELTKYDQLPAGQNATVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRK 1293
Query: 748 ETIDLS--DDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYC--SIYDK 803
++ +G K + + + H++++SDGL VG+ ++ GE Y S D+
Sbjct: 1294 YVTNMKSYSNGTKDILSPPTYENDAPIRK-HALLESDGLAAVGEQVNAGEVYINKSTPDQ 1352
Query: 804 TTNSWRTNSRKGS--------------ESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPI 849
+ +S S G + ++D V + ++N Q + R TR P
Sbjct: 1353 SMSSGMPGSDAGRPISYNPTPMTYKLPDPAYIDKVMISATENEN--QIIKVLTRQTRRPE 1410
Query: 850 IGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
+GDKFSSRHGQKGV + DMPF+ G+ PD+I+NPH FPSRMT+ +LE VA K
Sbjct: 1411 VGDKFSSRHGQKGVTGIIVDQADMPFTD-QGINPDIIMNPHGFPSRMTVGKMLELVAGK 1468
Score = 84.3 bits (207), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 105/461 (22%), Positives = 193/461 (41%), Gaps = 54/461 (11%)
Query: 37 HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
CR +Y + V+F+Y+ V R+ + G+ PVML++ +C L ++ L
Sbjct: 615 ECRLRDTTYAAPI--QVDFEYIRGRQRVRRKGVSIGRMPVMLRSSKCVLGNKTPAQMTVL 672
Query: 97 KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQ 156
E + GGYFI+NG E+ VIL ++ + + ++E RK +
Sbjct: 673 NECPLDPGGYFIVNGTEK----VILVQEQLSKNRIIVETDPKKEIVQASVTSSSNERKSK 728
Query: 157 SSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKE 216
S + LK RL +P+ I+LKA+ D E+ L D+ Y+
Sbjct: 729 SYIILK-------KDRLYVKHNVLSEDIPIVILLKAMGIHTDKEMM-LLVAGVDKVYQ-- 778
Query: 217 KGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQ--------SESYY 268
E I E + + T+ Q L IG + I+ Q E+
Sbjct: 779 ----------EDFAINFEEAIKVGVFTQQQALDWIGSRIK--INRKQMSYRRTHVQEAVE 826
Query: 269 AVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLI 328
A+A +I +I V + K + M +++ + ++ D+ D L N+ + L G L+
Sbjct: 827 AIASVII-SHIEVKDMNFRPKAIYVANMARRVLMAKNDAALVDDRDYLGNKRLELAGQLL 885
Query: 329 TIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIET---M 385
+ ++ + + K I D++ N + + F+ ++ + + ++ + +I T
Sbjct: 886 ALLFEDLFKKFCFDIKMNI-DKVLNKRNRVEAFDAWSVIGMHSNHITQGMNRAISTGNWS 944
Query: 386 LKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLLPE 444
LK R+ +RAG T RL+++ + + + F R S R L P
Sbjct: 945 LKRFRM---------ERAGVTHVLSRLSYIAALGMMTRI--SSQFEKTRKVSGPRALQPS 993
Query: 445 SWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDF 485
+G +C TP+GE CGL+ ++ + + D G I++
Sbjct: 994 QFGMICLADTPEGEACGLVKNLALMTHITT-NDEEGPIKNL 1033
>gi|323449816|gb|EGB05701.1| hypothetical protein AURANDRAFT_38329 [Aureococcus anophagefferens]
Length = 1233
Score = 210 bits (534), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 240/920 (26%), Positives = 378/920 (41%), Gaps = 154/920 (16%)
Query: 71 FGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSM 130
G P+ML++R C L ++L L E + GGYF++NG E+V ++ ++ +
Sbjct: 199 LGYVPIMLRSRFCVLADKSDKELCELGECIYDQGGYFVINGSEKV----VVAQERMSNNH 254
Query: 131 VRSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKE--YLLP--- 185
V FR ++ V R + + T +Y + G QG + LP
Sbjct: 255 V-YCFRKKQPHKYSWVVECRSHVEHGARPTSTIYMQMYNKAGRG-QSQGNQIRVTLPYVR 312
Query: 186 ----VGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSL 241
V +V +AL D +I H+ YD + ER++ L E +
Sbjct: 313 VDVPVIVVFRALGFVADRDILEHVV--YD---------FSDTEMMERLRPSLDEA--FVI 359
Query: 242 TTRLQCLQHIGEHFQPVIDGLQSESYYA--VAETVIRDYIFVHLNDNNDKFNLLIFMLQK 299
+ L IG G YA + + + ++ + K + +++ K
Sbjct: 360 QNQTIALDFIGRRGSATNIGRSKRVQYAKELLQKEVLPHVGTEEQSDTKKAFFVGYIVHK 419
Query: 300 LFSLVDHTSVSDNPDSLQNQEILLPGHLI----TIYLKEKLEDWLRKGKKLIQDEIENNG 355
L D+ D + + L G L+ + ++ +D L +K I D G
Sbjct: 420 LLMCSLERIDEDDRDHYGKKRLDLAGPLLGGLFRMLFRKLTKDVLAYLQKCIDD-----G 474
Query: 356 KKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFL 415
+ F NLA+ K S+ + + L TG + RAG + RL +
Sbjct: 475 RDF---NLASAIK------SRVVTDGLRYSLATGNWGDRKD---ASRAGVSQVLNRLTYA 522
Query: 416 RFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASY 475
+S R ++ G + R+L WGF+CP TP+G+ GL+ ++ V+
Sbjct: 523 STLSHLRRLNTPLGREG-KQAKPRQLHNTHWGFICPAETPEGQAVGLVKNLALMSYVS-- 579
Query: 476 YDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGP-----PAVLSVLLDGRVVGVIP 530
++ IL L S+ L + P P + ++G VGV
Sbjct: 580 ---------VGSPQSPILEFLEEW----SMENLEEISPQTIADPGTTKIFVNGSWVGVHR 626
Query: 531 S-SEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNIS 589
S +E + LRR I D EV V L ++T + RP+
Sbjct: 627 DPSTLESTLRSLRRQ-------IDIDPEVSVV---RDIKEKELRVYTDAGRVCRPL---- 672
Query: 590 LPSEESQNIELIGPFEQVFMEIRCPDG-------GDGG-----------------RRNAF 625
L E + + + E F E+R GD G A
Sbjct: 673 LIVEAASTVTRVRSQEATFQELRLRKSHVQKLVNGDLGWTQLLVKGLVELIDTEEEETAM 732
Query: 626 PA--------------THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSV 671
A TH EIHP+ +L + ++ P+ DHNQSPRN YQ M KQ MG
Sbjct: 733 IAMIPSDLNEPYSSTYTHCEIHPSMILGICGSIIPFPDHNQSPRNTYQSAMGKQAMGIYA 792
Query: 672 QALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILN 731
+ R D + L PQ P+ T E P+G NAIVA++ YTGY+ ED++I+N
Sbjct: 793 SNFQQRMDTLSHVLHYPQKPLATTRAMEHLHFRELPSGVNAIVAIMCYTGYNQEDSLIMN 852
Query: 732 KSSVDRGMCHGQIYQTETIDLSDDG--NKVDRGQKLFRR-NKDAKSL-----HSVIDSDG 783
++++DRG+ Y+T + + G + + Q+ F R N+D + + IDSDG
Sbjct: 853 QAAIDRGLFRSTFYRTYSDKEHNKGIWDSPEYLQETFERPNRDECTAMRHGSYEKIDSDG 912
Query: 784 LPYVGQMIHPGEPYCSIYDKTTNSWRTN---SRKG------------SESVFVDYVAVDM 828
L G + + + KT+ SW + R G +ES VD V +
Sbjct: 913 LVSPGVRVSGSD---ILVGKTSPSWHSGLKAERSGPSKRDSSTTMRPNESGLVDQVM--L 967
Query: 829 KNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIIN 888
+++ + +R R R P IGDKF+SRHGQKG + DMP++ G+ PD+I+N
Sbjct: 968 STNQDGMKFTKVRTRTIRIPQIGDKFASRHGQKGTIGMTYAQEDMPWTR-DGVSPDIIVN 1026
Query: 889 PHAFPSRMTIAMLLESVAAK 908
PHA PSRMTI L+E + +K
Sbjct: 1027 PHAIPSRMTIGHLVECLQSK 1046
>gi|395507733|ref|XP_003758175.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 [Sarcophilus
harrisii]
Length = 529
Score = 210 bits (534), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 117/366 (31%), Positives = 191/366 (52%), Gaps = 54/366 (14%)
Query: 12 LRELVRHHIESFDYMLDEGLSEMFD----------------------------------- 36
L+EL R HIESF+Y + EGLS
Sbjct: 35 LQELTRAHIESFNYAMREGLSHAVQAIPPLEFAFKDERITFAIVDAVVSPPMVPKGSICK 94
Query: 37 -------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGAD 89
CR + +Y GKL AD+ + ++++ + G P+M+K++ C+L
Sbjct: 95 ELKVYPAECRGRRSTYRGKLTADISWSVNGIPKGIIKQ--SLGYIPIMVKSKLCNLNNLP 152
Query: 90 SQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVI 149
+ L+ EEA EMGGYFI+NG+E++ R +I+P++N+P++M+R ++ R GYT + +
Sbjct: 153 PKALIEHHEEAEEMGGYFIINGIEKIIRMLIMPRRNFPIAMIRPKWKTRGPGYTHYGISM 212
Query: 150 RCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY 209
CVR + +++ + L+YL NGSV + F + + LP+G VLKALV +D +IF L
Sbjct: 213 HCVRDEHTAINMNLHYLENGSVMVNFIYHKELFFLPLGFVLKALVGFSDYQIFQELI--- 269
Query: 210 DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYA 269
+E+ + VS+ ++I++ E T+ Q L ++GE F+ + S
Sbjct: 270 ---KGREENSFFRNCVSQMLRIVMEE----GCLTQKQVLNYLGERFRVKLTLPDWYSNEQ 322
Query: 270 VAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
AE ++ + +HL N +KF +L M +KLF+ + +NPDSL NQE+L PG LI
Sbjct: 323 AAEFLLNQCVCIHLKSNEEKFYVLCLMTRKLFTFAKEECMEENPDSLMNQEVLTPGRLIL 382
Query: 330 IYLKEK 335
++LKE+
Sbjct: 383 MFLKEE 388
>gi|83765718|dbj|BAE55861.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 1180
Score = 210 bits (534), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 121/298 (40%), Positives = 163/298 (54%), Gaps = 20/298 (6%)
Query: 628 THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
TH EI P +L VA L PY HNQSPRN YQC M KQ +G R D LY +
Sbjct: 698 THLEIEPFTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIASNQFLRIDSILYLMVY 757
Query: 688 PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
PQ P+V++ T D+ P G NA+VAV++Y+GYD+EDA++LNK SVDRG Q+++
Sbjct: 758 PQKPMVKSRTIELTKYDQLPAGHNAMVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFKK 817
Query: 748 ETIDLSDDGNKVDRGQKLFRRNKDAK-SLHSVIDSDGLPYVGQMIHPGEPYC--SIYDKT 804
+L N + DA H++++SDGL VG+ ++ GE Y S D++
Sbjct: 818 SVANLKSYSNGTKDILMPPEYDNDAPIRKHALLESDGLAAVGEQVNAGEVYINKSTPDQS 877
Query: 805 TNSWRTNSRKG--------------SESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPII 850
S S G + ++D V V ++N Q + R TR P +
Sbjct: 878 LASGFPGSDMGRPVKYTPTPMTYKLHDPAYIDQVLVSTTENEN--QLIKVLTRQTRRPEV 935
Query: 851 GDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
GDKFSSRHGQKGV + DMPF+ G+ PD+I+NPH FPSRMT+ +LE VA K
Sbjct: 936 GDKFSSRHGQKGVVGIIADQADMPFTD-QGINPDIIMNPHGFPSRMTVGKMLELVAGK 992
Score = 89.7 bits (221), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 110/463 (23%), Positives = 193/463 (41%), Gaps = 59/463 (12%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR +Y + D F+Y+ V + + G+ PVML++ +C L ++ L
Sbjct: 139 CRLRDTTYAAPIQVD--FEYIRGRQRVKKTGCSIGRMPVMLRSSKCVLSDKTPAEMTVLD 196
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
E + GGYFI+NG E+ VIL ++ + + ++E RK +S
Sbjct: 197 ECPLDPGGYFIVNGTEK----VILVQEQLSKNRIIVETDPKKEIVQASVTSSSNERKSKS 252
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
+ LK L V+ + +P+ I+LKA+ D E+ L D+ Y+
Sbjct: 253 YIVLKKDKLY---VKHNVLSED----IPIVILLKAMGIHTDKEML-LLVAGIDKVYQ--- 301
Query: 218 GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQS--------ESYYA 269
E I E L + T+ Q L IG + + G Q+ E+ A
Sbjct: 302 ---------EDFAINFEEAIKLGIYTQQQALDWIGSRIK-INRGKQNNYRRTHVQEAVEA 351
Query: 270 VAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
+A +I +I V + K + M +++ + S+ D+ D L N+ + L G L+
Sbjct: 352 IASVII-SHIEVKDMNFRPKAVYVAHMARRVLMAKNDPSLVDDRDYLGNKRLELAGQLLA 410
Query: 330 IYLKEKLEDWLRK---GKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIET-- 384
+ ED +K K+ D++ N + + F+ + + + ++ + +I T
Sbjct: 411 LL----FEDLFKKFCFDIKMNVDKVLNKRNRAEAFDAWTVMSMHSNHITQGMNRAISTGN 466
Query: 385 -MLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLL 442
LK R+ +RAG T RL+++ + + + F R S R L
Sbjct: 467 WSLKRFRM---------ERAGVTHVLSRLSYIAALGMMTRI--SSQFEKTRKVSGPRALQ 515
Query: 443 PESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDF 485
P +G LC TP+GE CGL+ ++ + + D G IR+
Sbjct: 516 PSQFGMLCLADTPEGEACGLVKNLALMTHITT-NDEEGPIRNL 557
>gi|393244464|gb|EJD51976.1| DNA-dependent RNA polymerase II second largest subunit [Auricularia
delicata TFB-10046 SS5]
Length = 1217
Score = 210 bits (534), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 237/948 (25%), Positives = 384/948 (40%), Gaps = 158/948 (16%)
Query: 51 ADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILN 110
D ++Q D ++ G+ P+ML++ C L+ + L L E + GGYFI+N
Sbjct: 146 GDYDWQR-DPNESTTMQKIWIGKVPIMLRSSFCILKTLSDRDLYDLNECPYDQGGYFIIN 204
Query: 111 GLERVFRS----------VILPKQNYPMSM---VRSSFRDRREGYTDKAVVIRCVRKDQS 157
G E+V + V Q P++ +RS+ + G T + ++ ++Q
Sbjct: 205 GSEKVLIAQERMAANHVYVFAKAQPSPINFLAEIRSAVE--KGGKTISSFQVKMFHRNQE 262
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
+ +++ ++ +P+ IV +AL +D +I H+ CYD
Sbjct: 263 KTS-------GNTIKATIPYIKQD--IPIWIVFRALGVMSDRDILEHI--CYD------- 304
Query: 218 GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRD 277
+ + E +K + E + R Q L IG + GL E A+ +++
Sbjct: 305 --MHDVTMLEMLKPCIDE--GFVIQEREQALSFIG--VRGTTTGLNKERRLRYAQEILQK 358
Query: 278 YIFVHLN----DNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLK 333
+ H++ + K L +M+ +L D+ D + + L G L+ +
Sbjct: 359 EMLPHISMAEGSESKKAYFLGYMIHRLLLAALERRELDDRDHFGKKRLDLAGPLLASLFR 418
Query: 334 EKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLAT 393
+ + +Q +E + FNL+ K + I ++ L TG
Sbjct: 419 MLFRKLTKDVYRYLQKCVEARKE----FNLSLAVK------ANTITNGLKYSLATGNWGD 468
Query: 394 QTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVH 453
Q + +AG + R F +S R + G + R+L WG +CP
Sbjct: 469 QKK-SMSAKAGVSQVLNRYTFASTLSHLRRTNTPLGREG-KIAKPRQLHNTHWGMVCPAE 526
Query: 454 TPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGP 513
TP+G+ CGL+ ++ ++ + ++ L G+ SL + SG
Sbjct: 527 TPEGQACGLVKNLALMACIS-----------VGSLSAPVIEFLEEWGL-ESLEENAHSGV 574
Query: 514 PAVLSVLLDGRVVGV--IPSSEIEKVVAHLRRLKVS-AASVIPDDLEVGYVPLSLGGAYP 570
P+ V ++G +GV P++ ++ + R+ +S SV+ D E
Sbjct: 575 PST-KVFVNGVWMGVHRDPANLVKTIKKLRRKDDISPEVSVVRDIRE------------K 621
Query: 571 GLYLFTSPPKFVRP---------------VRNISLPSEESQN------------IELI-G 602
L L+T + RP V I +ES IEL+
Sbjct: 622 ELRLYTDAGRVCRPLFIVEDQQLVIKKHHVEWIQNKEDESGAPYKWDNLIKTGVIELLDA 681
Query: 603 PFEQVFMEIRCPDGGDGGR---RNAFPATHE-EIHPTGMLSVVAN--------------- 643
E+ M D + R R P + E P L V N
Sbjct: 682 EEEETVMICMTSDDLENSRLMSRGLAPRDADNEFDPAARLKSVVNAHTWTHCEIHPSMIL 741
Query: 644 -----LTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTY 698
+ P+ DHNQSPRN YQ M KQ MG + + R D L PQ P+ T +
Sbjct: 742 GICASIIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFQVRQDTMANILYYPQKPLATTRSM 801
Query: 699 TKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNK 758
E P G NAIVA+L Y+GY+ ED++I+N+SS+DRG+ IY +D+
Sbjct: 802 EYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRS-IYYRSYMDVEKKSGM 860
Query: 759 VDRGQ-KLFRRNKDAKSLHSVIDS---DGLPYVGQ-------MIHPGEPYCSIYDKTTNS 807
V + + R+ + H D DGL G +I P ++
Sbjct: 861 VALEEFEKPTRDTTLRMKHGTYDKLEDDGLIAPGTGVAGEDIIIGKTAPLPQDSEELGQR 920
Query: 808 WRTNSR-------KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQ 860
RT+ + K +E+ VD V + +++ + IR R TR P IGDKF+SRHGQ
Sbjct: 921 TRTHQKRDVSTPLKSTENGIVDQVLI--TTNQDGQKFVKIRIRSTRVPQIGDKFASRHGQ 978
Query: 861 KGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
KG + DMPF+ G+ PD+IINPHA PSRMTI L+E + +K
Sbjct: 979 KGTIGITYRQEDMPFTA-EGVTPDIIINPHAIPSRMTIGHLVECLLSK 1025
>gi|317139935|ref|XP_001817863.2| DNA-directed RNA polymerase III subunit RET1 [Aspergillus oryzae
RIB40]
Length = 1218
Score = 210 bits (534), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 121/298 (40%), Positives = 163/298 (54%), Gaps = 20/298 (6%)
Query: 628 THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
TH EI P +L VA L PY HNQSPRN YQC M KQ +G R D LY +
Sbjct: 736 THLEIEPFTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIASNQFLRIDSILYLMVY 795
Query: 688 PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
PQ P+V++ T D+ P G NA+VAV++Y+GYD+EDA++LNK SVDRG Q+++
Sbjct: 796 PQKPMVKSRTIELTKYDQLPAGHNAMVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFKK 855
Query: 748 ETIDLSDDGNKVDRGQKLFRRNKDAK-SLHSVIDSDGLPYVGQMIHPGEPYC--SIYDKT 804
+L N + DA H++++SDGL VG+ ++ GE Y S D++
Sbjct: 856 SVANLKSYSNGTKDILMPPEYDNDAPIRKHALLESDGLAAVGEQVNAGEVYINKSTPDQS 915
Query: 805 TNSWRTNSRKGS--------------ESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPII 850
S S G + ++D V V ++N Q + R TR P +
Sbjct: 916 LASGFPGSDMGRPVKYTPTPMTYKLHDPAYIDQVLVSTTENEN--QLIKVLTRQTRRPEV 973
Query: 851 GDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
GDKFSSRHGQKGV + DMPF+ G+ PD+I+NPH FPSRMT+ +LE VA K
Sbjct: 974 GDKFSSRHGQKGVVGIIADQADMPFTD-QGINPDIIMNPHGFPSRMTVGKMLELVAGK 1030
Score = 90.1 bits (222), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 110/463 (23%), Positives = 193/463 (41%), Gaps = 59/463 (12%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR +Y + D F+Y+ V + + G+ PVML++ +C L ++ L
Sbjct: 177 CRLRDTTYAAPIQVD--FEYIRGRQRVKKTGCSIGRMPVMLRSSKCVLSDKTPAEMTVLD 234
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
E + GGYFI+NG E+ VIL ++ + + ++E RK +S
Sbjct: 235 ECPLDPGGYFIVNGTEK----VILVQEQLSKNRIIVETDPKKEIVQASVTSSSNERKSKS 290
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
+ LK L V+ + +P+ I+LKA+ D E+ L D+ Y+
Sbjct: 291 YIVLKKDKLY---VKHNVLSED----IPIVILLKAMGIHTDKEML-LLVAGIDKVYQ--- 339
Query: 218 GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQS--------ESYYA 269
E I E L + T+ Q L IG + + G Q+ E+ A
Sbjct: 340 ---------EDFAINFEEAIKLGIYTQQQALDWIGSRIK-INRGKQNNYRRTHVQEAVEA 389
Query: 270 VAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
+A +I +I V + K + M +++ + S+ D+ D L N+ + L G L+
Sbjct: 390 IASVII-SHIEVKDMNFRPKAVYVAHMARRVLMAKNDPSLVDDRDYLGNKRLELAGQLLA 448
Query: 330 IYLKEKLEDWLRK---GKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIET-- 384
+ ED +K K+ D++ N + + F+ + + + ++ + +I T
Sbjct: 449 LL----FEDLFKKFCFDIKMNVDKVLNKRNRAEAFDAWTVMSMHSNHITQGMNRAISTGN 504
Query: 385 -MLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLL 442
LK R+ +RAG T RL+++ + + + F R S R L
Sbjct: 505 WSLKRFRM---------ERAGVTHVLSRLSYIAALGMMTRI--SSQFEKTRKVSGPRALQ 553
Query: 443 PESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDF 485
P +G LC TP+GE CGL+ ++ + + D G IR+
Sbjct: 554 PSQFGMLCLADTPEGEACGLVKNLALMTHITT-NDEEGPIRNL 595
>gi|354544175|emb|CCE40898.1| hypothetical protein CPAR2_109360 [Candida parapsilosis]
Length = 1228
Score = 210 bits (534), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 237/928 (25%), Positives = 384/928 (41%), Gaps = 142/928 (15%)
Query: 71 FGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSM 130
G+ P+M++++ C L+ ++ LKE +MGGYF++NG E+ V++ ++ ++
Sbjct: 159 LGKVPIMVRSKFCMLRDLGEHEMYELKECPYDMGGYFVINGSEK----VLIAQERSAANI 214
Query: 131 VRSSFRDRREGYTDKAVVIRCVRKDQ---SSVTLKLYYLLNGSVRLGFWLQGKEYL---L 184
V+ + + A + + K S++ +KLY S Y+ +
Sbjct: 215 VQVFKKAAPSPISHVAEIRSAIEKGSRLISAMQIKLYGRDEKSSSARTIKATLPYIKEDI 274
Query: 185 PVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTR 244
P+ IV +AL D +I H+ CYD + + P V E I EV
Sbjct: 275 PIVIVFRALGVVPDGDILEHI--CYDAN-DWQMLEMLKPCVEEGFVIQEREV-------- 323
Query: 245 LQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDNND----KFNLLIFMLQKL 300
L IG + G++ E A+ +++ + ++ K L +M+ +L
Sbjct: 324 --ALDFIGRRG---VLGIRREKRIQYAKDILQKELLPNITQEEGFETRKAFFLGYMVNRL 378
Query: 301 FSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDF 360
D+ D + + L G L+ + + + +Q +EN+ +
Sbjct: 379 LLCALERKEPDDRDHFGKKRLDLAGPLLANLFRILFKKLTKDIYNYMQRCVENDKE---- 434
Query: 361 FNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISF 420
FNL K S+ I + L TG Q + RAG + R + +S
Sbjct: 435 FNLTLAVK------SQTITDGLRYSLATGNWGEQKKA-MSSRAGVSQVLNRYTYSSTLSH 487
Query: 421 FRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRG 480
R + G + R+L WG +CP TP+G+ CGL+ +++ ++
Sbjct: 488 LRRTNTPIGRDG-KIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCIS------- 539
Query: 481 NIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAH 540
+ S+ +S LR G+ P L V S P V ++G VGV E +V +
Sbjct: 540 -VGTPSEPISSFLR---DWGLEP-LEDYVPSNSPDATRVFVNGVWVGV--HREPASLVDY 592
Query: 541 LRRLKVSA-----ASVIPDDLEVGY-VPLSLGGAYPGLYLFTSPP------------KFV 582
+R L+ + S+I D E + G Y L++ P + V
Sbjct: 593 MRDLRRNGDISPEVSIIRDIREKELKIFTDAGRVYRPLFIVDDNPDSETKGDLKLKKEHV 652
Query: 583 RPVRNISLPSEESQN------------IELI-GPFEQVFMEIRCPDGGDGGRRNAFPATH 629
+ S +E + +E + E+ M PD + + N
Sbjct: 653 NRLLESSYDGDEDEPSYTWSSLVREGIVEYVDAEEEETIMIAMTPDDLEASKSNLTETQQ 712
Query: 630 EE-------------IHPTG----------------MLSVVANLTPYSDHNQSPRNMYQC 660
++ I PTG +L V A++ P+ DHNQSPRN YQ
Sbjct: 713 QDLQMEEQELDPAKRIKPTGSSNTHTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQS 772
Query: 661 QMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYT 720
M KQ MG + R D L PQ P+ T E P G NAIVA+ Y+
Sbjct: 773 AMGKQAMGVFLTNYAVRMDTMANILYYPQKPLATTRAMEHLKFRELPAGQNAIVAIACYS 832
Query: 721 GYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSL----- 775
GY+ ED+MI+N+SS+DRG +++ +DL + + + + F + + +L
Sbjct: 833 GYNQEDSMIMNQSSIDRGFFRSLFFRS-YMDL--EKRQGMKALETFEKPSRSDTLRLKHG 889
Query: 776 -HSVIDSDGL--PYV---GQMIHPGEPYCSIYDKTTNSWRTNSR---------KGSESVF 820
+ +D DGL P V G+ I G+ D RT + +ES
Sbjct: 890 TYEKLDDDGLIAPGVRVSGEDIIIGKTTPIPPDTEELGQRTQYHTKRDASTPLRSTESGI 949
Query: 821 VDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTG 880
VD V + + + + +R R T+ P IGDKF+SRHGQKG + DMPF+ G
Sbjct: 950 VDQVL--LTTNGDGAKFVKVRMRTTKVPQIGDKFASRHGQKGTIGVTYRHEDMPFTA-EG 1006
Query: 881 MRPDLIINPHAFPSRMTIAMLLESVAAK 908
+ PDLIINPHA PSRMT+A L+E + +K
Sbjct: 1007 IVPDLIINPHAIPSRMTVAHLIECLLSK 1034
>gi|238483555|ref|XP_002373016.1| DNA-directed RNA polymerase III, beta subunit, putative [Aspergillus
flavus NRRL3357]
gi|220701066|gb|EED57404.1| DNA-directed RNA polymerase III, beta subunit, putative [Aspergillus
flavus NRRL3357]
Length = 1218
Score = 209 bits (533), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 121/298 (40%), Positives = 163/298 (54%), Gaps = 20/298 (6%)
Query: 628 THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
TH EI P +L VA L PY HNQSPRN YQC M KQ +G R D LY +
Sbjct: 736 THLEIEPFTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIASNQFLRIDSILYLMVY 795
Query: 688 PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
PQ P+V++ T D+ P G NA+VAV++Y+GYD+EDA++LNK SVDRG Q+++
Sbjct: 796 PQKPMVKSRTIELTKYDQLPAGHNAMVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFKK 855
Query: 748 ETIDLSDDGNKVDRGQKLFRRNKDAK-SLHSVIDSDGLPYVGQMIHPGEPYC--SIYDKT 804
+L N + DA H++++SDGL VG+ ++ GE Y S D++
Sbjct: 856 SVANLKSYSNGTKDILMPPEYDNDAPIRKHALLESDGLAAVGEQVNAGEVYINKSTPDQS 915
Query: 805 TNSWRTNSRKGS--------------ESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPII 850
S S G + ++D V V ++N Q + R TR P +
Sbjct: 916 LASGFPGSDMGRPVKYTPTPMTYKLHDPAYIDQVLVSTTENEN--QLIKVLTRQTRRPEV 973
Query: 851 GDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
GDKFSSRHGQKGV + DMPF+ G+ PD+I+NPH FPSRMT+ +LE VA K
Sbjct: 974 GDKFSSRHGQKGVVGIIADQADMPFTD-QGINPDIIMNPHGFPSRMTVGKMLELVAGK 1030
Score = 89.7 bits (221), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 110/463 (23%), Positives = 193/463 (41%), Gaps = 59/463 (12%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR +Y + D F+Y+ V + + G+ PVML++ +C L ++ L
Sbjct: 177 CRLRDTTYAAPIQVD--FEYIRGRQRVKKTGCSIGRMPVMLRSSKCVLSDKTPAEMTVLD 234
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
E + GGYFI+NG E+ VIL ++ + + ++E RK +S
Sbjct: 235 ECPLDPGGYFIVNGTEK----VILVQEQLSKNRIIVETDPKKEIVQASVTSSSNERKSKS 290
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
+ LK L V+ + +P+ I+LKA+ D E+ L D+ Y+
Sbjct: 291 YIVLKKDKLY---VKHNVLSED----IPIVILLKAMGIHTDKEML-LLVAGIDKVYQ--- 339
Query: 218 GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQS--------ESYYA 269
E I E L + T+ Q L IG + + G Q+ E+ A
Sbjct: 340 ---------EDFAINFEEAIKLGIYTQQQALDWIGSRIK-INRGKQNNYRRTHVQEAVEA 389
Query: 270 VAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
+A +I +I V + K + M +++ + S+ D+ D L N+ + L G L+
Sbjct: 390 IASVII-SHIEVKDMNFRPKAVYVAHMARRVLMAKNDPSLVDDRDYLGNKRLELAGQLLA 448
Query: 330 IYLKEKLEDWLRK---GKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIET-- 384
+ ED +K K+ D++ N + + F+ + + + ++ + +I T
Sbjct: 449 LL----FEDLFKKFCFDIKMNVDKVLNKRNRAEAFDAWTVMSMHSNHITQGMNRAISTGN 504
Query: 385 -MLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLL 442
LK R+ +RAG T RL+++ + + + F R S R L
Sbjct: 505 WSLKRFRM---------ERAGVTHVLSRLSYIAALGMMTRI--SSQFEKTRKVSGPRALQ 553
Query: 443 PESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDF 485
P +G LC TP+GE CGL+ ++ + + D G IR+
Sbjct: 554 PSQFGMLCLADTPEGEACGLVKNLALMTHITT-NDEEGPIRNL 595
>gi|259489446|tpe|CBF89725.1| TPA: DNA-directed RNA polymerase III, beta subunit, putative
(AFU_orthologue; AFUA_1G02460) [Aspergillus nidulans FGSC
A4]
Length = 1225
Score = 209 bits (532), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 118/300 (39%), Positives = 165/300 (55%), Gaps = 22/300 (7%)
Query: 627 ATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQ 686
TH EI P +L VA L PY HNQSPRN YQC M KQ +G R D LY +
Sbjct: 742 TTHMEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIASNQFLRIDSILYLMV 801
Query: 687 TPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQ 746
PQ P+V++ T D+ P G NA VAV++Y+GYD+EDA++LNK SVDRG Q+++
Sbjct: 802 YPQKPMVKSRTIELTKYDQLPAGQNATVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFR 861
Query: 747 TETIDLS--DDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYC--SIYD 802
++ +G K + + + H++++SDGL VG+ ++ GE Y S D
Sbjct: 862 KYVTNMKSYSNGTKDILSPPTYENDAPIRK-HALLESDGLAAVGEQVNAGEVYINKSTPD 920
Query: 803 KTTNSWRTNSRKGS--------------ESVFVDYVAVDMKNSKNLPQKANIRFRHTRNP 848
++ +S S G + ++D V + ++N Q + R TR P
Sbjct: 921 QSMSSGMPGSDAGRPISYNPTPMTYKLPDPAYIDKVMISATENEN--QIIKVLTRQTRRP 978
Query: 849 IIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
+GDKFSSRHGQKGV + DMPF+ G+ PD+I+NPH FPSRMT+ +LE VA K
Sbjct: 979 EVGDKFSSRHGQKGVTGIIVDQADMPFTD-QGINPDIIMNPHGFPSRMTVGKMLELVAGK 1037
Score = 85.5 bits (210), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 107/463 (23%), Positives = 192/463 (41%), Gaps = 60/463 (12%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR +Y + D F+Y+ V R+ + G+ PVML++ +C L ++ L
Sbjct: 185 CRLRDTTYAAPIQVD--FEYIRGRQRVRRKGVSIGRMPVMLRSSKCVLGNKTPAQMTVLN 242
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
E + GGYFI+NG E+ VIL ++ + + ++E RK +S
Sbjct: 243 ECPLDPGGYFIVNGTEK----VILVQEQLSKNRIIVETDPKKEIVQASVTSSSNERKSKS 298
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
+ LK RL +P+ I+LKA+ D E+ L D+ Y+
Sbjct: 299 YIILK-------KDRLYVKHNVLSEDIPIVILLKAMGIHTDKEMM-LLVAGVDKVYQ--- 347
Query: 218 GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQ--------SESYYA 269
E I E + + T+ Q L IG + I+ Q E+ A
Sbjct: 348 ---------EDFAINFEEAIKVGVFTQQQALDWIGSRIK--INRKQMSYRRTHVQEAVEA 396
Query: 270 VAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
+A +I +I V + K + M +++ + ++ D+ D L N+ + L G L+
Sbjct: 397 IASVII-SHIEVKDMNFRPKAIYVANMARRVLMAKNDAALVDDRDYLGNKRLELAGQLLA 455
Query: 330 IYLKEKLEDWLRK---GKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIET-- 384
+ ED +K K+ D++ N + + F+ ++ + + ++ + +I T
Sbjct: 456 LL----FEDLFKKFCFDIKMNIDKVLNKRNRVEAFDAWSVIGMHSNHITQGMNRAISTGN 511
Query: 385 -MLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLL 442
LK R+ +RAG T RL+++ + + + F R S R L
Sbjct: 512 WSLKRFRM---------ERAGVTHVLSRLSYIAALGMMTRI--SSQFEKTRKVSGPRALQ 560
Query: 443 PESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDF 485
P +G +C TP+GE CGL+ ++ + + D G I++
Sbjct: 561 PSQFGMICLADTPEGEACGLVKNLALMTHITT-NDEEGPIKNL 602
>gi|344247350|gb|EGW03454.1| DNA-directed RNA polymerase II subunit RPB2 [Cricetulus griseus]
Length = 807
Score = 209 bits (532), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 183/637 (28%), Positives = 281/637 (44%), Gaps = 70/637 (10%)
Query: 311 DNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVM 370
D+ D N+ + L G L+ + ++ L++ + Q I+ GK F+ LA IK
Sbjct: 16 DDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDR-GKDFNL-ELA-IK--- 69
Query: 371 EKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASF 430
++ I ++ L TG Q Q RAG + RL F +S R ++
Sbjct: 70 ----TRIISDGLKYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRLNSPIGR 124
Query: 431 AGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRT 490
G + R+L WG +CP TP+G GL+ ++ ++ +
Sbjct: 125 DG-KLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYIS-----------VGSQPS 172
Query: 491 SILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK----- 545
IL L M +L ++ + + ++G VG+ + E+++ LR+L+
Sbjct: 173 PILEFLEEWSM-ENLEEISPAAIADATKIFVNGCWVGI--HKDPEQLMNTLRKLRRQMDI 229
Query: 546 -VSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN------- 597
VS S+I D E + G L K + R+I E N
Sbjct: 230 IVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDL 289
Query: 598 -----IELIGPFEQ--VFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDH 650
+E I E+ V + + D + TH EIHP+ +L V A++ P+ DH
Sbjct: 290 VASGVVEYIDTLEEETVMLAMTPDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDH 349
Query: 651 NQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGT 710
NQSPRN YQ M KQ MG + R D + L PQ P+V T + E P G
Sbjct: 350 NQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGI 409
Query: 711 NAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNK 770
N+IVA+ +YTGY+ ED++I+N+S+VDRG Y++ S G D+ + + +
Sbjct: 410 NSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKG--FDQEEVFEKPTR 467
Query: 771 DA-----KSLHSVIDSDGLPYVGQMIHPGE----PYCSIYDKTTNSWRTNSR-------- 813
+ +++ +D DGL G + + ++ + TN R
Sbjct: 468 ETCQGMRHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRYTKRDCST 527
Query: 814 --KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDI 871
+ SE+ VD V V + + IR R R P IGDKF+SRHGQKG C +
Sbjct: 528 FLRTSETGIVDQVMVTLNQEGY--KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQE 585
Query: 872 DMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
DMPF+ G+ PD+IINPHA PSRMTI L+E + K
Sbjct: 586 DMPFT-CEGITPDIIINPHAIPSRMTIGHLIECLQGK 621
>gi|145512048|ref|XP_001441946.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124409207|emb|CAK74549.1| unnamed protein product [Paramecium tetraurelia]
Length = 1214
Score = 209 bits (531), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 229/961 (23%), Positives = 413/961 (42%), Gaps = 122/961 (12%)
Query: 19 HIESFDYMLDEGLSEMFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRER-------FNF 71
H++ F+ E + M R S K+ +V Q + + E+ F
Sbjct: 109 HVDKFE----EEIFPMIARLRDLTYSRQLKIDLEVTMQQRNKRDGTIEEKSKQQFKGLPF 164
Query: 72 GQFPVMLKTRRCHLQ-GADSQKLVSLKEEAAE----MGGYFILNGLERVFRS-------- 118
+ P+M+++R C LQ +L+ L+ + E GGYFIL G E+V +
Sbjct: 165 FKLPIMVRSRFCSLQKDPKDAELIQLRIQNGECGFDQGGYFILRGSEKVIVAQERIANNV 224
Query: 119 VILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQ 178
V++ K + R + + +++ V +R Q++ ++ SV+ Q
Sbjct: 225 VLVFKSKIVNKPWVAEIRSQPDLFSNPNVFKVELRYIQNTPVIRC------SVKQFNSTQ 278
Query: 179 GKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIIL--AEV 236
G +P+ + +AL ++D EI + Y E +G P++ + E
Sbjct: 279 G----IPLFTLFRALGISSDQEILERIV------YNLEDEFMG-PMLEMLYGSLQEGGEY 327
Query: 237 QDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDNND----KFNL 292
+D L CL+ IG + + E+ A+ +I I H+ + + K
Sbjct: 328 EDEEL-----CLRWIGNKIKKA-ENQDPETLIQEAKKLINKNILPHIGVSTESRDRKAYF 381
Query: 293 LIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIE 352
L +++ +L + + D+ D + + + G ++ K E + + KK ++ I
Sbjct: 382 LGYIVHRLLNASLGKTDQDDRDHYGKKRLDMAGAMMMGVFKTSFEQFKQNSKKALEKYIN 441
Query: 353 NN----GKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLA-TQTGLDLQQRAGYTV 407
G++ N+ + +QI I+ L TG ++ G ++ T+
Sbjct: 442 GGRRGRGQQTKIENMRQPDDIKSFFDGEQISKDIDNALATGNWGRSKEGQVVKTGVAQTL 501
Query: 408 QAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMT 467
+ E + +S R ++ + ++ + R+L +GF+CP TP+G+ G++ +++
Sbjct: 502 KRE-TSLFATLSHLRRMNAPIN-PQMKLSKPRQLHNTHFGFICPAETPEGQKIGIVKNLS 559
Query: 468 STCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGP------PAVLSVLL 521
V++ D L LI V ++ G P + VL+
Sbjct: 560 LMTTVSN---------DLQSKDKETLLKLIMVSQQNDFDFILLQGDFQAQDIPRMTKVLV 610
Query: 522 DGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKF 581
DG +G + E+ + + L+ + S IP ++ + + ++ + ++T +
Sbjct: 611 DGNWIGF--TRNPEQFIHEFKNLRSAEESYIPIEVSINFDYVN-----KEIRIYTDAGRC 663
Query: 582 VRP---VRNISLPSEESQNIELIGPFEQVFMEIRCP-----------------DGGDGGR 621
+RP V+N L + + I +E++ ++ +C D G
Sbjct: 664 MRPLFIVQNNKLKLMKGV-LNQINDWEEL-LKNKCVELLDVEEEEGSLIAMDIDIMMRGT 721
Query: 622 RNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQK 681
+N TH EIHP M V A++ P+++HNQ PRN Q M KQ MG + R D
Sbjct: 722 QNFKRYTHCEIHPCMMFGVCASVIPFANHNQGPRNTLQSAMGKQAMGLNSTNFNIRFDTL 781
Query: 682 LYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCH 741
++ L PQ P+ + ++E P G N + ++ +TGY+ ED++I+N+ ++DRG
Sbjct: 782 VHILHYPQKPLASSRAVDFITVNEVPIGINCVTSIACFTGYNQEDSIIINQYAIDRGFFR 841
Query: 742 GQIYQT--ETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCS 799
Y+T E+ D D + K N K L +DSDG+ G + EP
Sbjct: 842 SVFYRTYKESEDKDPDNFTETKITKPIGDNFAGK-LFIKLDSDGIVPPGTKVDEEEPIIG 900
Query: 800 ---IYDK---TTNSWRTNSRKGS------ESVFVDYVAVDMKNSKNLPQKANIRFRHTRN 847
I D T + + N+++ S E VD V + +N K + ++ R R
Sbjct: 901 KELIIDNIMLNTANGQKNTKECSLLTRRAERGVVDSVLIS-ENQKGY-KLVKVKVRSLRI 958
Query: 848 PIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAA 907
P IGDKF SRHGQKG C + D+P++ + G+ PDL INPH PSRMTI L+E +++
Sbjct: 959 PQIGDKFCSRHGQKGTCGMTYRQEDLPYT-LVGISPDLTINPHCIPSRMTIGHLIECLSS 1017
Query: 908 K 908
K
Sbjct: 1018 K 1018
>gi|145525932|ref|XP_001448777.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124416343|emb|CAK81380.1| unnamed protein product [Paramecium tetraurelia]
Length = 1203
Score = 208 bits (530), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 238/972 (24%), Positives = 418/972 (43%), Gaps = 155/972 (15%)
Query: 19 HIESFDYMLDEGLSEMFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRER-------FNF 71
HI+ F+ E + M R S K+ +V Q + + E+ F
Sbjct: 109 HIDKFE----EEIFPMIARLRDLTYSRQLKIDLEVTMQQRNKRDGSIEEKSKQTFKGLPF 164
Query: 72 GQFPVMLKTRRCHL-----QGADSQKLVSLKEEAAEMGGYFILNGLERV----------- 115
+ P+M+++R C L Q+ + E + GGYFIL G E+V
Sbjct: 165 FKLPIMVRSRFCSLPKDPKDPEQIQQRIQSGECGFDQGGYFILRGSEKVIVAQERIANNV 224
Query: 116 ---FRSVILPKQNYP-MSMVRS---------SFRDRREGYTDKAVVIRCVRKDQSSVTLK 162
F+S I+ N P ++ +RS +F+ Y VIRC K +S
Sbjct: 225 VLVFKSKIV---NKPWVAEIRSQPDLWSNPNNFKVELR-YIQNTPVIRCSVKQFNST--- 277
Query: 163 LYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGS 222
QG +P+ + +AL ++D EI + Y E +G
Sbjct: 278 ---------------QG----IPLFTLFRALGISSDQEILERIV------YNLEDEQMG- 311
Query: 223 PLVSERVKIIL--AEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIF 280
P++ + E +D L CL+ IG + + E+ A+ +I I
Sbjct: 312 PMLEMLYGSLQEGGEYEDEEL-----CLRWIGNKIKKA-ENQDPETLIQEAKKLINKNIL 365
Query: 281 VHL---NDNNDKFNLLI-FMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKL 336
H+ +++ D+ I +++ +L + + D+ D + + + G ++ K
Sbjct: 366 PHIGVSSESRDRKAYFIGYIVHRLLNASLGKTDQDDRDHYGKKRLDMAGAMMMGVFKTSF 425
Query: 337 EDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLA-TQT 395
E + + KK ++ I NG+ N+ + +QI I+ L TG ++
Sbjct: 426 ESFKQNAKKALEKYI--NGE-----NMRQPDDIKSFFDGEQISKDIDNALATGNWGRSKE 478
Query: 396 GLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTP 455
G ++ T++ E + +S R ++ + ++ + R+L +GF+CP TP
Sbjct: 479 GQVVKTGVAQTLKRE-TSLFATLSHLRRMNAPIN-PQMKLSKPRQLHNTHFGFICPAETP 536
Query: 456 DGEPCGL---LNHMTSTCRVASYYDSRGNIRDFSKMRTSIL--RVLIGVGMIPSLPKLVK 510
+G+ G+ L+ MT+ D ++ ++ + ++L G +PK+ K
Sbjct: 537 EGQKIGIVKNLSLMTAVSNDLQQKDKETLLKLIMVLKQDVFDFQLLQGDFQAQDIPKMTK 596
Query: 511 SGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYP 570
VL+DG +G + E+ + + L+ + S IP ++ + + ++
Sbjct: 597 --------VLVDGNWIGF--TRNPEQFIQEFKNLRSAEESFIPIEVSINFDYVN-----K 641
Query: 571 GLYLFTSPPKFVRP---VRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDG-------- 619
+ ++T + +RP V++ L +++Q + +EQ+ ++ +C + D
Sbjct: 642 EIRIYTDAGRCMRPLFIVQDNKLKLKKNQ-LNSFTDWEQL-LQNKCVELLDVEEEEGSLI 699
Query: 620 ---------GRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFS 670
G +N TH EIHP M V A++ P+++HNQ PRN Q M KQ MG +
Sbjct: 700 AMDLNIMTRGTQNFKRYTHCEIHPCMMFGVCASVIPFANHNQGPRNTLQSAMGKQAMGLN 759
Query: 671 VQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMIL 730
R D ++ L PQ P+ + ++E P G N + ++ +TGY+ ED++I+
Sbjct: 760 STNFNIRFDTLVHILHYPQKPLASSKAVDFITVNEVPIGINCVTSIACFTGYNQEDSIII 819
Query: 731 NKSSVDRGMCHGQIYQT--ETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVG 788
N+ ++DRG Y+T E+ D D + K N K L +DSDG+ G
Sbjct: 820 NQYAIDRGFFRSVFYRTYKESEDKDPDNFTETKITKPLGDNYAGK-LFIKLDSDGIVPPG 878
Query: 789 QMIHPGEPYCS---IYDK---TTNSWRTNSRKGS------ESVFVDYVAVDMKNSKNLPQ 836
+ EP I D T + + N+++ S E VD V + +N K +
Sbjct: 879 TKVDEEEPIIGKELIIDNIMLNTANGQKNTKECSLLTRRAERGVVDSVLIS-ENQKGY-K 936
Query: 837 KANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRM 896
++ R R P IGDKF SRHGQKG C + D+PF+ + G+ PDL INPH PSRM
Sbjct: 937 LVKVKVRSLRIPQIGDKFCSRHGQKGTCGMTYRQEDLPFT-LVGISPDLTINPHCIPSRM 995
Query: 897 TIAMLLESVAAK 908
TI L+E +++K
Sbjct: 996 TIGHLIECLSSK 1007
>gi|169844839|ref|XP_001829140.1| DNA-dependent RNA polymerase II second largest subunit [Coprinopsis
cinerea okayama7#130]
gi|116509880|gb|EAU92775.1| DNA-dependent RNA polymerase II second largest subunit [Coprinopsis
cinerea okayama7#130]
Length = 1222
Score = 208 bits (530), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 231/918 (25%), Positives = 376/918 (40%), Gaps = 138/918 (15%)
Query: 71 FGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRS----------VI 120
G+ P+ML++ C L Q L L E + GGYFI+NG E+V + V
Sbjct: 171 IGKVPIMLRSSFCILHELRDQDLYDLNECPYDSGGYFIINGSEKVLIAQERMATNHVYVF 230
Query: 121 LPKQNYPMSM---VRSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWL 177
Q P++ +RS+ R G T ++ ++Q + +++
Sbjct: 231 AKAQPSPINFLAEIRSAVE--RGGKTISQFQVKMFHRNQERSLGNVMKATIPYIKVD--- 285
Query: 178 QGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQ 237
+P+ +V +AL +D +I H+ CYD + + + P + + I EV
Sbjct: 286 ------IPIWVVFRALGVISDRDILEHI--CYDMQ-DAQMLEMLKPCIDDGFVIQDREV- 335
Query: 238 DLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLN----DNNDKFNLL 293
L IG + GL + A+ +++ + H++ + K
Sbjct: 336 ---------ALDFIGN--RGTTTGLPRDRRIRYAQEILQKEMLPHISMAEGSESKKAYFF 384
Query: 294 IFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIEN 353
+M+ +L D+ D + + L G L+ + + + +Q +E
Sbjct: 385 GYMIHRLLLAALERRELDDRDHFGKKRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCVET 444
Query: 354 NGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLN 413
+ + FNL+ K + I ++ L TG Q + +AG + R
Sbjct: 445 HKE----FNLSLAVK------HQTITNGLKYSLATGNWGDQKK-SMSSKAGVSQVLNRYT 493
Query: 414 FLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMT--STCR 471
+ +S R + G + R+L WG +CP TP+G+ CGL+ ++ +
Sbjct: 494 YASTLSHLRRCNTPLGREG-KIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMACIS 552
Query: 472 VASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGV--I 529
V SY ++ L G+ SL + S P V ++G +GV
Sbjct: 553 VGSY-------------SAPVIEFLEEWGL-ESLEENAHSTTPCT-KVFVNGVWMGVHRD 597
Query: 530 PSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSP-------PKFV 582
P++ ++ + R+ +S + D+ + L LF K V
Sbjct: 598 PANLVKTIKKLRRKDDISPEVSVVRDIRERELRLYTDAGRVCRPLFIVENQQLVLQKKHV 657
Query: 583 RPVRNIS--------------------LPSEESQNIELIGPFEQVFMEIRCPDGGD---- 618
R + N L +EE + + + E + + R +G +
Sbjct: 658 RWLANSENDDGEEWKWENLIKSGIVELLDAEEEETVMICMTPEDLEVSRRQSEGMEIQDH 717
Query: 619 -----GGRRNAFPATHEEIH----PTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGF 669
R A H H P+ +L + A++ P+ DHNQSPRN YQ M KQ MG
Sbjct: 718 EDYDPAARLKAGTHAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGI 777
Query: 670 SVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMI 729
+ R D L PQ P+ T + E P G N+IVA+L Y+GY+ ED++I
Sbjct: 778 FLTNFLIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNSIVAILCYSGYNQEDSVI 837
Query: 730 LNKSSVDRGMCHGQIYQTETIDLSDDG--NKVDRGQKLFRRN--KDAKSLHSVIDSDGLP 785
+N+SS+DRG+ IY +DL +++ +K R + + I+ DGL
Sbjct: 838 VNQSSIDRGLFRS-IYYRSYMDLEKKSGIQQLEEFEKPTRETTLRMKHGTYDKIEDDGLI 896
Query: 786 YVGQ-------MIHPGEPYCSIYDKTTNSWRTNSR-------KGSESVFVDYVAVDMKNS 831
G +I P ++ RT++R K +E+ VD V + NS
Sbjct: 897 APGTNVTGEDIIIGKTAPIPPDSEELGQRTRTHTRRDVSTPLKSTENGIVDQVLI-TTNS 955
Query: 832 KNLPQK-ANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPH 890
+ QK +R R TR P IGDKF+SRHGQKG + DMPF+ G+ PDLIINPH
Sbjct: 956 EG--QKFVKVRVRSTRIPQIGDKFASRHGQKGTIGIAYRQEDMPFTA-EGIVPDLIINPH 1012
Query: 891 AFPSRMTIAMLLESVAAK 908
A PSRMTI L+E + +K
Sbjct: 1013 AIPSRMTIGHLVECLLSK 1030
>gi|395334467|gb|EJF66843.1| DNA-dependent RNA polymerase II second largest subunit [Dichomitus
squalens LYAD-421 SS1]
Length = 1222
Score = 208 bits (530), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 235/925 (25%), Positives = 388/925 (41%), Gaps = 152/925 (16%)
Query: 71 FGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSM 130
G+ P+ML++ C L ++L L E + GGYFI+NG E+ V++ ++ +
Sbjct: 171 IGKVPIMLRSTYCILHELGDKELFDLNECPYDSGGYFIINGSEK----VLIAQERMATNH 226
Query: 131 VRSSFRDRREGYTDKAVVIRCVRKDQSSVT---LKLYYLLNGSVRLGFWLQGK-EYL--- 183
V + + + A + V K +++ +KLY+ + LG ++ Y+
Sbjct: 227 VYVFAKAQPSPISFLAEIRSAVEKGGKTISQFQVKLYH-RSQERSLGNVMKATIPYIKVD 285
Query: 184 LPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTT 243
+P+ +V +AL +D +I H+ CYD + + + P + E I E+
Sbjct: 286 IPIWVVFRALGVISDRDILEHI--CYDMQ-DNQMLEMLKPCIDEGFVIQDREI------- 335
Query: 244 RLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLN----DNNDKFNLLIFMLQK 299
L +IG + GL E A+ +++ + H++ + K +M+ +
Sbjct: 336 ---ALDYIGN--RGTTTGLNRERRLRYAQEILQKEMLPHVSMAEGSESKKAYFFGYMIHR 390
Query: 300 LFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFD 359
L D+ D + + L G L+ + + + +Q +E + K+F
Sbjct: 391 LLLAALERRDLDDRDHFGKKRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCVETH-KEF- 448
Query: 360 FFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFIS 419
NI ++ N I ++ L TG Q + +AG + R + +S
Sbjct: 449 -----NISLAVKHNT---ITNGLKYSLATGNWGDQKK-SMSSKAGVSQVLNRYTYASTLS 499
Query: 420 FFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSR 479
R + G + R+L WG +CP TP+G+ CGL+ +++ ++
Sbjct: 500 HLRRCNTPLGREG-KIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMSCIS------ 552
Query: 480 GNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVA 539
+ ++ L G+ SL + + P V ++G +GV + K+V+
Sbjct: 553 -----VGTLSAPVIEFLEEWGL-ESLEENAHASTPCT-KVFVNGVWMGV--HRDPVKLVS 603
Query: 540 HLRRLKVS-----AASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRP---VRNISLP 591
LR+L+ SV+ D E L L+T + RP V N L
Sbjct: 604 TLRKLRRKDDINCEVSVVRDIRE------------RELRLYTDAGRVCRPLFIVENQQLL 651
Query: 592 SEESQ------------------------NIELI-GPFEQVFMEIRCPDGGDGGRRNAF- 625
++ IEL+ E+ M P+ + R A
Sbjct: 652 IQKKHIESLVRAKDDPTFNYNWDSLLKDGVIELLDAEEEETVMICMTPEDLENSRLQAAG 711
Query: 626 --PATHEEIHPTG--------------------MLSVVANLTPYSDHNQSPRNMYQCQMA 663
P EE P+ +L V A++ P+ DHNQSPRN YQ M
Sbjct: 712 IDPHADEEEDPSARLKAPTSAHTWTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMG 771
Query: 664 KQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYD 723
KQ MG + R D L PQ P+ T + E P G NAIVA+L Y+GY+
Sbjct: 772 KQAMGIFLTNFLIRMDTMANILYYPQKPLATTRSMEYLRFRELPAGQNAIVAILCYSGYN 831
Query: 724 MEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAK-----SLHSV 778
ED++I+N+SS+DRG+ IY +DL + + V + ++ + +D +
Sbjct: 832 QEDSVIMNQSSIDRGLFRS-IYYRSYMDL-EKKSGVQQLEEFEKPTRDTTLRMKHGTYDK 889
Query: 779 IDSDGLPYVGQ-------MIHPGEPYCSIYDKTTNSWRTNSR-------KGSESVFVDYV 824
++ DGL G +I P ++ RT+++ K +E VD V
Sbjct: 890 LEDDGLIAPGTNVNGEDIIIGKTAPIPPDSEELGQRTRTHTKRDVSTPLKSTEQGIVDQV 949
Query: 825 AVDMKNSKNLPQK-ANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRP 883
+ N++ QK IR R TR P IGDKF+SRHGQKG + DMPF+ G+ P
Sbjct: 950 LI-TTNAEG--QKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTA-EGITP 1005
Query: 884 DLIINPHAFPSRMTIAMLLESVAAK 908
D+IINPHA PSRMTI L+E + +K
Sbjct: 1006 DIIINPHAIPSRMTIGHLVECLLSK 1030
>gi|156627835|gb|ABU88905.1| RNA polymerase II second largest subunit [Psilopezia deligata]
Length = 801
Score = 208 bits (530), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 216/788 (27%), Positives = 344/788 (43%), Gaps = 111/788 (14%)
Query: 184 LPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTT 243
+P+ IV +AL +D +I NH+ CYD + E + P + E I QD +
Sbjct: 47 IPIVIVFRALGVVSDEDILNHV--CYD-RNDTEMLEMMKPCIEEAFVI-----QDREI-- 96
Query: 244 RLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLN----DNNDKFNLLIFMLQK 299
L +IG+ G E A +++ + H++ + K L +M+ +
Sbjct: 97 ---ALDYIGKRGNS--QGSNKEKRIRYARDILQKELLPHISQQEGNETRKAFFLGYMVHR 151
Query: 300 LFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFD 359
L D+ D + + L G L+ + + ++ K ++ +E GK+F+
Sbjct: 152 LLQCALERREVDDRDHFGKKRLDLAGPLLAQLFRTLWKQLTKEVYKYLEKCVEG-GKEFN 210
Query: 360 FFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFIS 419
NLA +K S I + ++ L TG A+Q +AG + R F +S
Sbjct: 211 L-NLA-VK-------SNTITSGLKYSLATGNWASQKKA-ASSKAGVSQVLNRYTFASTLS 260
Query: 420 FFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNH---MTSTCRVASYY 476
R + G + R+L WG +CP TP+G+ CGL+ + M+ R
Sbjct: 261 HLRRTNTPIGRDG-KIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLALMSYITRNMEPL 319
Query: 477 DSRGNIRDFSKMRTSILRVLIGVGMIP-----SLPKLVKSGPPA-VLSVLLD-------- 522
+ R + + + V +G+ P ++ +L ++G + +SV+ D
Sbjct: 320 EEYEPQRSPNATKIFVNGVWVGIHRDPLHLVRTVQRLRRTGVISHEVSVIRDIRDREFKI 379
Query: 523 ----GRVVGVI------PSSEIEKVVA----HLRRLKVSAASVIPDDLEVGYVPLSLGGA 568
GRV + P+SE + H+ RL+ +P++ G+ L GA
Sbjct: 380 FTDAGRVCRPLFVIENDPTSERRGQLVLQKEHIERLEDDHG--LPEEERFGWKGLLSVGA 437
Query: 569 YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPA- 627
YL + V V +++EL QV + D +R P
Sbjct: 438 VE--YLDAEEEETVMIVMT-------PEDLEL---SRQVQAGYEIAEETDMAKRVKAPIN 485
Query: 628 ------THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQK 681
TH EIHP+ +L + A++ P+ DHNQSPRN YQ M KQ MG + + R D
Sbjct: 486 PATHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNFQERMDTM 545
Query: 682 LYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCH 741
L PQ P+ T + E P G NAIVA+L Y+GY+ ED++I+N+SS+DRG+
Sbjct: 546 ANILYYPQKPLATTRSMEFLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFR 605
Query: 742 GQIYQTET-------IDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQ----- 789
Y+ + + ++ K R L + + +D DGL G
Sbjct: 606 SLFYRCYLDQEKRVGMQIVEEFEKPQRSTTL----RLKXGTYDKLDEDGLVAPGVRVSGE 661
Query: 790 --MIHPGEPYCSIYDKTTNSWRTNSR-------KGSESVFVDYVAVDMKNSKNLPQKANI 840
+I P D+ + +++ + +E+ VD V V NS+ + + +
Sbjct: 662 DIIIGKTSPISPDTDEMGQRQKYHTKRDVSTPLRSTENGIVDQV-VFTTNSEGM-KFVKV 719
Query: 841 RFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAM 900
R R T+ P IGDKF+SRHGQKG + DMPF+ G+ PDLIINPHA PSRMTIA
Sbjct: 720 RMRTTKIPQIGDKFASRHGQKGTIGITYRMEDMPFT-CEGIVPDLIINPHAIPSRMTIAH 778
Query: 901 LLESVAAK 908
L+E +K
Sbjct: 779 LIECQLSK 786
>gi|70906409|gb|AAZ14928.1| DNA-dependent RNA polymerase II second largest subunit [Coprinellus
disseminatus]
Length = 1241
Score = 208 bits (529), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 234/930 (25%), Positives = 392/930 (42%), Gaps = 130/930 (13%)
Query: 54 EFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLE 113
E + D G P E+ G+ P+ML++ C L +L L E + GGYFI+NG E
Sbjct: 175 ETEQEDTGEP---EKIWIGKVPIMLRSSFCILHQLRDNELYDLNECPYDSGGYFIINGSE 231
Query: 114 RVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSSVT---LKLYYLLNGS 170
+V ++ ++ + V + + A + V K +++ +K+++ N
Sbjct: 232 KV----LIAQERMATNHVYVFAKAQPSPINFLAEIRSAVEKGGKTISQFQVKMFHR-NQE 286
Query: 171 VRLGFWLQGK-EYL---LPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVS 226
+G ++ Y+ +P+ +V +AL +D +I H+ CYD + + + P +
Sbjct: 287 RSMGNVMKATIPYIKVDIPIWVVFRALGVISDRDILEHI--CYDMQ-DAQMLEMLKPCID 343
Query: 227 ERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLN-- 284
+ I EV L IG + GL E A+ +++ + H++
Sbjct: 344 DGFVIQDREV----------ALDFIGN--RGTTTGLSRERRIRYAQEILQKEMLPHISMA 391
Query: 285 --DNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRK 342
+ K +M+ +L D+ D + + L G L+ + +
Sbjct: 392 EGSESKKAYFFGYMIHRLLLAALERRELDDRDHFGKKRLDLAGPLLAGLFRMLFRKLTKD 451
Query: 343 GKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQR 402
+ +Q +E + + FNL K + I ++ L TG Q + +
Sbjct: 452 VYRYLQKCVETHKE----FNLTLAVK------QQTITNGLKYSLATGNWGDQKKT-MSSK 500
Query: 403 AGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGL 462
AG + R + +S R + G + R+L WG +CP TP+G+ CGL
Sbjct: 501 AGVSQVLNRYTYASTLSHLRRCNTPLGREG-KIAKPRQLHNTHWGMVCPAETPEGQACGL 559
Query: 463 LNHMT--STCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVL 520
+ ++ S V SY ++ L G+ SL + S P V
Sbjct: 560 VKNLALMSCISVGSY-------------SAPVIEFLEEWGL-ESLEENAHSSTPCT-KVF 604
Query: 521 LDGRVVGV--IPSSEIEKVVAHLRRLKVSAASVIPDDL---------EVGYV--PL---- 563
++G +GV P++ ++ + R+ +S + D+ + G V PL
Sbjct: 605 VNGVWMGVHRDPANLVKTIKKLRRKDDISPEVSVVRDIRERELRLYTDAGRVCRPLFIVE 664
Query: 564 ---------SLGGAYPGLYLFTSPPKFVRPVRNIS---LPSEESQNIELIGPFEQVFMEI 611
+G G+ P K+ +++ L +EE + + + E + +
Sbjct: 665 NQQLLLQKKHIGWLNDGVDDQGEPYKWENLIKSGVIELLDAEEEETVMISMTPEDLDISR 724
Query: 612 RCPDGGD----------GGRRNAFPATHEEIH----PTGMLSVVANLTPYSDHNQSPRNM 657
R +G + R A H H P+ +L + A++ P+ DHNQSPRN
Sbjct: 725 RQAEGEETPENDAEFDPAARLKAGTHAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNT 784
Query: 658 YQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVL 717
YQ M KQ MG + R D L PQ P+ T + E P G NAIVA+L
Sbjct: 785 YQSAMGKQAMGIYLTNFLVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAIL 844
Query: 718 AYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGN--KVDRGQKLFRRN--KDAK 773
Y+GY+ ED++I+N+SS+DRG+ Y++ +DL +++ +K R +
Sbjct: 845 CYSGYNQEDSVIMNQSSIDRGLFRSMYYRS-YMDLEKKSGALQLEEFEKPTRDTTLRMKH 903
Query: 774 SLHSVIDSDGLPYVGQ-------MIHPGEPYCSIYDKTTNSWRTNSR-------KGSESV 819
+ I+ DG G +I P ++ R ++R K +E+
Sbjct: 904 GTYDKIEDDGFIAPGTNVTGEDIIIGKTAPIPPDSEELGQRTRAHTRRDVSTPLKSTENG 963
Query: 820 FVDYVAVDMKNSKNLPQK-ANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGV 878
VD V + N++ QK +R R TR P IGDKF+SRHGQKG + DMPF+
Sbjct: 964 IVDQVLI-TTNAEG--QKFVKVRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFT-C 1019
Query: 879 TGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
G+ PDLIINPHA PSRMTI L+E + +K
Sbjct: 1020 EGIVPDLIINPHAIPSRMTIGHLVECLLSK 1049
>gi|115396768|ref|XP_001214023.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Aspergillus
terreus NIH2624]
gi|114193592|gb|EAU35292.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Aspergillus
terreus NIH2624]
Length = 1219
Score = 208 bits (529), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 121/301 (40%), Positives = 165/301 (54%), Gaps = 26/301 (8%)
Query: 628 THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
TH EI P +L VA L PY HNQSPRN YQC M KQ +G R D LY +
Sbjct: 737 THLEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIASNQFLRIDSILYLMVY 796
Query: 688 PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
PQ P+V++ T D+ P G NAIVAV++Y+GYD+EDA++LNK SVDRG Q+++
Sbjct: 797 PQKPMVKSRTIELTKYDQLPAGQNAIVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRK 856
Query: 748 ETIDLSDDGNKV-DRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTT- 805
+L N D N H++++SDGL VG+ ++ GE Y +K+T
Sbjct: 857 YVTNLKSYSNGTKDMLTPPSYENDAPIRKHALLESDGLAAVGEQVNAGEVYI---NKSTP 913
Query: 806 ---NSWRTN---------------SRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRN 847
NS+ + K + ++D V + + ++N Q + R TR
Sbjct: 914 DQANSFGIGGPDPNRPINYMPTPMTYKLPDPAYIDQVLLSVTENEN--QLVKVLTRQTRR 971
Query: 848 PIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAA 907
P +GDKFSSRHGQKGV + DMPF+ G+ PD+I+NPH FPSRMT+ +LE VA
Sbjct: 972 PEVGDKFSSRHGQKGVVGIIADQADMPFTD-QGINPDIIMNPHGFPSRMTVGKMLELVAG 1030
Query: 908 K 908
K
Sbjct: 1031 K 1031
Score = 96.7 bits (239), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 112/473 (23%), Positives = 199/473 (42%), Gaps = 80/473 (16%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR +Y + D F Y+ V + + G+ PVML++ +C L ++ L
Sbjct: 179 CRLRDTTYAAPIQVD--FDYVRGRQRVRKRGYAIGRMPVMLRSSKCVLANKSPAEMTVLN 236
Query: 98 EEAAEMGGYFILNGLERVF--------RSVIL---PKQNYPMSMVRSSFRDRREGYTDKA 146
E + GGYFI+NG E+V +I+ PK+ + V SS +R+ K+
Sbjct: 237 ECPLDPGGYFIVNGTEKVILVQEQLSKNRIIVETDPKKEIVQASVTSSSNERKS----KS 292
Query: 147 VVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLT 206
++ ++KD+ V + +LN + P+ I+LKA+ D E+ L
Sbjct: 293 YIV--LKKDKLYVK---HNVLNEDI-------------PIVILLKAMGINTDKEML-LLV 333
Query: 207 CCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSE- 265
D+ Y+ E I E +L + T+ Q L IG + I+ Q+
Sbjct: 334 AGVDKVYQ------------EDFAINFEEAINLGIYTQQQALDWIGARIK--INRKQASY 379
Query: 266 --SYYAVAETVIRDYIFVHLNDNNDKFN----LLIFMLQKLFSLVDHTSVSDNPDSLQNQ 319
++ A I I H+ N F + M +++ + ++ D+ D L N+
Sbjct: 380 RRTHVQEAIEAIASVIISHIEVKNMNFRPKAIYVAHMARRVLMAKNDPTLVDDRDYLGNK 439
Query: 320 EILLPGHLITIYLKEKLEDWLRK---GKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
+ L G L+ + ED +K K+ D++ N + + F+ ++ + + ++
Sbjct: 440 RLELAGQLLALL----FEDLFKKFCFDIKMNVDKVLNKRNRAEAFDAWSVMSMHTNHITQ 495
Query: 377 QIGTSIET---MLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGL 433
+ +I T LK R+ +RAG T RL+++ + + + F
Sbjct: 496 GMNRAISTGNWSLKRFRM---------ERAGVTHVLSRLSYIAALGMMTRI--SSQFEKT 544
Query: 434 RTTS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDF 485
R S R L P +G LCP TP+GE CGL+ ++ + + D G IR+
Sbjct: 545 RKVSGPRALQPSQFGMLCPADTPEGEACGLVKNLALMTHITT-NDEEGPIRNL 596
>gi|443919777|gb|ELU39849.1| DNA-directed RNA polymerase II [Rhizoctonia solani AG-1 IA]
Length = 1179
Score = 207 bits (528), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 229/920 (24%), Positives = 378/920 (41%), Gaps = 174/920 (18%)
Query: 89 DSQKLVSLKEEAAEMGGYFILNGLERVFRS----------VILPKQNYPMSM---VRSSF 135
+S+ L L E + GGYFI+NG E+V + V Q P+S +RS+
Sbjct: 215 ESKDLYDLNECPLDQGGYFIINGSEKVLIAQERMAGNHVYVFAKAQPSPISFLSEIRSAV 274
Query: 136 RDRREGYTDKAVVIRCVRKDQSS-----VTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVL 190
+ G T + ++ ++Q + L Y+ N +P+ +V
Sbjct: 275 E--KGGKTISTMQVKMFHRNQDKTLGNVIRASLPYIKND--------------IPIWVVF 318
Query: 191 KALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQH 250
+AL T+D +I H+ CYD + + P + E ++ E + + L
Sbjct: 319 RALGVTSDRDILEHI--CYD-RDDTSMLEMLKPCIDE--GFVIQE----RIVSGQNALDF 369
Query: 251 IGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLN----DNNDKFNLLIFMLQKLFSLVDH 306
IG + GL E A+ +++ + H++ K +M+ +L
Sbjct: 370 IGS--RGTTTGLNKEKRLRYAQEILQKEMLPHISMAEGSETKKAFFFGYMIHRLLLAALD 427
Query: 307 TSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANI 366
D+ D + + L G L+ + +KL +D +E+N ++F +
Sbjct: 428 RRELDDRDHFGKKRLDLAGPLLASLFRMLF-------RKLTKDCVESN-REF------QL 473
Query: 367 KKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHR 426
+ ++ N I ++ L TG Q + +AG + R F +S R +
Sbjct: 474 RLAVKANT---ITNGLKYSLATGNWGDQKK-SMSAKAGVSQVLNRYTFASTLSHLRRCNT 529
Query: 427 GASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFS 486
G + R+L WG +CP TP+G+ CGL+ +++ ++
Sbjct: 530 PLGREG-KIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMSCIS-----------VG 577
Query: 487 KMRTSILRVLIGVGMIPSLPKLVKSGPPA-VLSVLLDGRVVGVIPSS-EIEKVVAHLRRL 544
+ ++ L G+ SL + V +G A V ++G +G+ + + K + LRR+
Sbjct: 578 SLSGPVIEFLEEWGL-ESLEENVATGNSASATKVFVNGVWLGIHRDAPNLVKTLHRLRRM 636
Query: 545 K--VSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPV------RNISLP----- 591
S S++ D E L ++T + RP+ + ++L
Sbjct: 637 DHINSEVSIVRDIRE------------KELRIYTDAGRICRPLFIVDEQQKLTLKKKHVE 684
Query: 592 ------SEESQN-----------IELI-GPFEQVFMEIRCPDGGDGGRR----------- 622
EE Q IEL+ E+ M P+ + RR
Sbjct: 685 WLQNGVDEEGQEFKWKQLVKRGVIELLDADEEETVMISMTPEDLENSRRIEGGGYVSNVN 744
Query: 623 ------------NAFPATHE----EIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQT 666
+ P H EIHP+ +L + A++ P+ DHNQSPRN YQ M KQ
Sbjct: 745 DPDWDPSGTARVKSVPNIHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQA 804
Query: 667 MGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMED 726
MG + + R D L PQ P+ T + E P G NAIVA+L Y+GY+ ED
Sbjct: 805 MGIYLTNYQIRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCYSGYNQED 864
Query: 727 AMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQ-KLFRRNKDAKSLHSVID----- 780
++I+N+SS+DRG+ Y++ +D+ ++ + + R+ + H D
Sbjct: 865 SVIMNQSSIDRGLFRSMYYRS-YMDIEKKAGVLNLEEFEKPTRDTTLRMKHGTYDKLEAD 923
Query: 781 ---SDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSR---------KGSESVFVDYVAVDM 828
+ G G+ I G+ D RT S K +E+ VD V +
Sbjct: 924 GFIAPGTGVTGEDIIIGKTAPLQADSEELGQRTRSHTKRDVSTPLKSTENGIVDQVLITT 983
Query: 829 KNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIIN 888
+ + + +R R TR P GDKF+SRHGQKG + DMPF+ G+ PDLIIN
Sbjct: 984 NHEGH--KFVKVRVRSTRVPQTGDKFASRHGQKGTIGITYRQEDMPFTA-EGITPDLIIN 1040
Query: 889 PHAFPSRMTIAMLLESVAAK 908
PHA PSRMTI L+E + +K
Sbjct: 1041 PHAIPSRMTIGHLVECLLSK 1060
>gi|392296021|gb|EIW07124.1| Rpa135p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 442
Score = 207 bits (528), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 103/210 (49%), Positives = 141/210 (67%), Gaps = 5/210 (2%)
Query: 703 IDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRG 762
+D +P G NA+VAV++YTGYDM+DAMI+NKS+ +RG +G +Y+TE +DL+ + N+ D
Sbjct: 1 MDNFPNGFNAVVAVISYTGYDMDDAMIINKSADERGFGYGTMYKTEKVDLALNRNRGDPI 60
Query: 763 QKLFRRNKDA--KSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVF 820
+ F D K +D DGLPY+G + G+P C+ +D T N + + SE +
Sbjct: 61 TQHFGFGNDEWPKEWLEKLDEDGLPYIGTYVEEGDPICAYFDDTLNKTKIKTYHSSEPAY 120
Query: 821 VDYVAV--DMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGV 878
++ V + D N Q +I++R R P IGDKFSSRHGQKGVCS+ WP IDMPFS
Sbjct: 121 IEEVNLIGDESNKFQELQTVSIKYRIRRTPQIGDKFSSRHGQKGVCSRKWPTIDMPFS-E 179
Query: 879 TGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
TG++PD+IINPHAFPSRMTI M +ES+A K
Sbjct: 180 TGIQPDIIINPHAFPSRMTIGMFVESLAGK 209
>gi|242808107|ref|XP_002485094.1| DNA-directed RNA polymerase III, beta subunit, putative [Talaromyces
stipitatus ATCC 10500]
gi|218715719|gb|EED15141.1| DNA-directed RNA polymerase III, beta subunit, putative [Talaromyces
stipitatus ATCC 10500]
Length = 1212
Score = 207 bits (527), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 121/300 (40%), Positives = 165/300 (55%), Gaps = 23/300 (7%)
Query: 628 THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
TH EI P +L VA L PY HNQSPRN YQC M KQ +G R D LY +
Sbjct: 729 THLEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIASNQFLRIDSLLYLMVY 788
Query: 688 PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
PQ P+V+T T D P G NA VAV++Y+GYD+EDA++LNK SVDRG Q+++
Sbjct: 789 PQKPMVKTRTIELIKYDHLPAGQNATVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRK 848
Query: 748 ETIDLSDDGNKVD---RGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCS--IYD 802
+L N + RG ++ N H+++DSDGL VG+++ G+ Y + +
Sbjct: 849 YVANLKSYPNGSEDRLRGPEIGENNVPIAK-HALLDSDGLAAVGEVVSQGQVYINKEVPA 907
Query: 803 KTTNSWRTNSRKGS--------------ESVFVDYVAVDMKNSKNLPQKANIRFRHTRNP 848
++ T S G + ++D V V + ++ K ++ R TR P
Sbjct: 908 AAFSAGITGSDAGRPTDYNPAPMTYKLPDPSYIDKVMVSVTEGESKIYK--VQTRQTRRP 965
Query: 849 IIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
+GDKFSSRHGQKGV + DMPF+ G+ PD+I+NPH FPSRMT+ LLE VA K
Sbjct: 966 EVGDKFSSRHGQKGVVGIIAEQADMPFTD-QGIVPDIIMNPHGFPSRMTVGKLLELVAGK 1024
Score = 81.3 bits (199), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 102/450 (22%), Positives = 184/450 (40%), Gaps = 51/450 (11%)
Query: 36 DHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVS 95
+ CR ++Y + D F Y V + R G+ P+ML++ +C L +L
Sbjct: 169 NECRLRDMTYAAPIFVD--FTYKRGKDNVTQRRVPIGRMPIMLRSSKCVLSNKKPNELHL 226
Query: 96 LKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKD 155
L E + GGYFI+NG E+ VIL ++ + + ++E RK
Sbjct: 227 LNECPLDPGGYFIVNGTEK----VILVQEQLSKNRIIVETDPKKEIVQASVTSSSNERKS 282
Query: 156 QSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKK 215
+S + LK RL +P+ IVLKA+ +D E+ L D+ Y+
Sbjct: 283 KSYIILK-------KDRLYLRHNVLSEDVPLVIVLKAMGVHSDKEMM-LLVAGIDDVYQ- 333
Query: 216 EKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQ---PVIDGLQ----SESYY 268
E I E ++ T+ Q L IG + + G + E+
Sbjct: 334 -----------EDFAINFEEAIKQNVFTQQQALDWIGSKIKINRGKVGGYKKTHIEEAIE 382
Query: 269 AVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLI 328
A++ VI ++ V D K + M +++ S+ D+ D + N+ + L G L+
Sbjct: 383 AISSVVI-SHVEVTNMDFRPKAIYVANMARRVLMAKHDPSMVDDRDYVGNKRLELAGQLL 441
Query: 329 TIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIET---M 385
+ ++ + + K I + ++ + F+ ++ + + + + +I T
Sbjct: 442 ALLFEDLFKKFCFDIKMNITKVL--GKRRREIFDAMSVVALHGNHITHGMNRAISTGNWS 499
Query: 386 LKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLLPE 444
LK R+ +RAG T RL+++ + + + F R S R L P
Sbjct: 500 LKRFRM---------ERAGVTHVLSRLSYIAALGMMTRI--SSQFEKTRKVSGPRALQPS 548
Query: 445 SWGFLCPVHTPDGEPCGLLNHMTSTCRVAS 474
+G LCP TP+GE CGL+ ++ + +
Sbjct: 549 QFGMLCPSDTPEGEACGLVKNLALMTHITT 578
>gi|406863176|gb|EKD16224.1| DNA-directed RNA polymerase III polypeptide [Marssonina brunnea f.
sp. 'multigermtubi' MB_m1]
Length = 1214
Score = 207 bits (527), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 122/301 (40%), Positives = 172/301 (57%), Gaps = 23/301 (7%)
Query: 627 ATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKF-RADQKLYHL 685
+TH EI P +L VA L PY HNQSPRN YQC M KQ +G S+ +F R D LY +
Sbjct: 731 STHLEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIG-SIAYNQFSRIDTLLYLM 789
Query: 686 QTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIY 745
PQ P+V+T T D+ P G NA VAV++Y+GYD+EDA++LNKSS DRG Q++
Sbjct: 790 VYPQQPMVKTRTIELIHYDKLPAGQNATVAVMSYSGYDIEDALVLNKSSCDRGFGRCQVF 849
Query: 746 QTETIDLSDDGNK-VDR-GQKLFRRNKDAKSL--HSVIDSDGLPYVGQMIHPGEPYCSI- 800
+ I L N+ DR G ++ +K + H ++ SDG+ VG+ I GE +C+
Sbjct: 850 RKNMISLKKYPNRSYDRIGDRVLDEKDPSKPIAKHRILTSDGIAAVGERIFSGEVFCNKE 909
Query: 801 -----------YDKTTNSWR--TNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRN 847
D TN ++ S + + ++D V + + K ++ R TR
Sbjct: 910 TPLNTISTGIGSDYGTNDYKPAPASYRAYDFAYIDKVMTTQNDRDDTIIK--VQTRQTRR 967
Query: 848 PIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAA 907
P +GDKFSSRHGQKGV + DMPF+ +G+ PD+I+NPH FPSRMT+ +LE ++
Sbjct: 968 PELGDKFSSRHGQKGVVGIIVNQEDMPFAD-SGVCPDIIMNPHGFPSRMTVGKMLELLSG 1026
Query: 908 K 908
K
Sbjct: 1027 K 1027
Score = 95.9 bits (237), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 106/454 (23%), Positives = 182/454 (40%), Gaps = 69/454 (15%)
Query: 36 DHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVS 95
+ CR ++Y + V +Y+ + R G+ P+ML++ +C L G D +
Sbjct: 168 NECRLRDLTYAAPIR--VNIKYIRGKQVIHRTDIAIGRLPIMLRSSKCRLSGGDDHDMAH 225
Query: 96 LKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKD 155
+ E A + GGYFI+NG E+ VIL ++ S R E K +V V
Sbjct: 226 MNECALDPGGYFIVNGTEK----VILVQEQL------SKNRVIVETDVKKGIVSASVTSS 275
Query: 156 QSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKK 215
K Y LL R+ +P+ I LKAL +D E+ L D Y+
Sbjct: 276 THERKSKSYVLLKKE-RIVLQHNILNEAIPIVIALKALGIQSDHEML-LLVAGTDSTYQD 333
Query: 216 EKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQ---------------PVID 260
+ + E + + ++ Q L+ IG + V D
Sbjct: 334 D------------FAVNFEECTKMGVFSQHQALEWIGTRVKMGSRKGTPGAPQRRNHVAD 381
Query: 261 GLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQE 320
L++ S ++I ++ VH D K + FM++++ + D+ D + N+
Sbjct: 382 ALEALS------SIIITHVPVHGLDFRPKALYICFMVRRVLMANHDPKLVDDRDYVGNKR 435
Query: 321 ILLPGHLITIYLKEKLEDWLRKGKKLIQDEIE------NNGKKFDFFNLANIKKVMEKNP 374
+ L G L+++ ED +K ++ I+ N +FD FN ++
Sbjct: 436 LELAGQLLSLL----FEDLFKKFNSDLKMNIDKVLKKPNRTMQFDAFNHL-------QSH 484
Query: 375 SKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLR 434
I + + TG + + +RAG T RL+++ + + + F R
Sbjct: 485 GNHITQGMNRAISTGNWSVKRF--KMERAGVTHVLSRLSYISALGMMTRI--SSQFEKTR 540
Query: 435 TTS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMT 467
S R L P +G LCP TP+GE CGL+ ++
Sbjct: 541 KVSGPRALQPSQFGMLCPSDTPEGEACGLVKNLA 574
>gi|40253865|dbj|BAD05800.1| putative DNA-dependent RNA polymerase II [Oryza sativa Japonica
Group]
Length = 1136
Score = 207 bits (527), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 247/996 (24%), Positives = 416/996 (41%), Gaps = 180/996 (18%)
Query: 1 MARKKSADFEPLRELVRHHIESFDYMLDEGLSEMFDHC------------------RQAK 42
+ ++ S F LV H I S++ + GL +MFD R A
Sbjct: 35 LCKEASRSFFRETRLVSHQINSYNDFVSHGLQKMFDSLDEVTVEPDYDPSKKVGPWRHAT 94
Query: 43 ISYTGKLMADVEFQYLDAGS----PVVRER--------FNFGQFPVMLKTRRCHLQGADS 90
I + G++ D P ++ + G+ PVM+K+ C L
Sbjct: 95 IKF-GRVELVYSLHKSDKAKTGEDPYIQRKDIMKETKWVTIGKLPVMVKSNLCWLH---- 149
Query: 91 QKLVSLKEEAAE--MGGYFILNGLERVF---------RSVILPKQNYPMSMVRSSFRDRR 139
L+E E GGYF++ G+E+VF R I + RS R R
Sbjct: 150 ----KLQESECEYDFGGYFLIKGMEKVFVAEEQRCLSRIWINDSPTWEACYQRSQIR--R 203
Query: 140 EGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDL 199
E + K V D + LY+L G+ +P+ I+ AL ++D
Sbjct: 204 EKISIKPVQ----SNDGFRKVINLYFL--GAT------------IPIWIMFFALGVSSDK 245
Query: 200 EIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVI 259
E F+ + +E A + ++S + + + R E+ +I
Sbjct: 246 EAFDIIDI-------QECDASMANIISATITESHEQCEGFQREGR------ASEYIDKLI 292
Query: 260 DGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQ 319
+ + E + R ++F ++ N K L +M++ L SDN D +N+
Sbjct: 293 RNTKFPPKGSFDEYIGR-HMFPDVSGNRSKALFLGYMVRCLLLASSGNRKSDNRDDFRNK 351
Query: 320 EILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNG--KKFDFFNLANIKKVMEKNPSKQ 377
+ L L+ L + ++ K++Q + +G + + + A+I
Sbjct: 352 RLDLACELLQRELWVHIMHAQKRMVKVMQRHLSGDGDLQPLECYVHASI----------- 400
Query: 378 IGTSIETMLKTGRLATQTGLDLQQR-AGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
+ + TG + ++R +G R N L+ +S R + ++AG +
Sbjct: 401 VTNGLNRAFSTGSWCHP--FNKRERCSGIVATLRRTNPLQMMSDMRKTRQWVAYAG-KAG 457
Query: 437 SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
R P WG LC + TPDGE CG + ++ T V+ R + L
Sbjct: 458 DARYPNPSYWGKLCFLSTPDGEKCGFVKNLAITAIVSCL------------AREPSVDAL 505
Query: 497 IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLR----RLKVSAASVI 552
+ GM L +L+ + L+G +VGV S + V HLR R ++ A I
Sbjct: 506 VSCGM-KKLDELLLQEISGKDRIFLNGNLVGVCADSV--EFVLHLRSMRRRKQIDAQVEI 562
Query: 553 PDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPV------RNI--------SLPSEESQNI 598
D + V +F+ P + +RP+ RNI S QNI
Sbjct: 563 KRDKQNKEV-----------RIFSDPGRILRPLLIVENLRNIMNRKNGSYSFQELMDQNI 611
Query: 599 -ELIGPFEQVFMEIRCPDG------GDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHN 651
ELIG E+ +IRC G GD + +F TH E+ P+ +L + ++ P+++H+
Sbjct: 612 IELIGVEEE--EDIRCAYGIRHLFAGDEEKNFSF-YTHCELDPSFLLGLSCSIIPFANHD 668
Query: 652 QSPRNMYQCQ-MAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRT--------NTYTK-- 700
+ R + Q + +++Q +G+S FR D + L PQ P+ +T YT
Sbjct: 669 TAKRILMQAEKISQQAIGYSTTNPLFRVDTHSHQLYYPQRPLFKTVAADCLGKRDYTSGS 728
Query: 701 ---YGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT--ETIDLSDD 755
+ EY G NAIV++ + G++ ED+++LN++S++RGM Q +++ I+ +
Sbjct: 729 KHDFARPEYFNGQNAIVSISVHQGFNQEDSLVLNRASLERGMFRTQHFKSYKALIENKEI 788
Query: 756 GNKVDRGQKL-FRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRK 814
++ + + F + K L +D DGLPY+G + + I K ++S +S K
Sbjct: 789 TKRLKHKENINFGKTPSKKGLVDSLDIDGLPYIGASLQSND---IIIGKVSDSGEDHSIK 845
Query: 815 --GSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDID 872
+E V+ V + + A + R TR+P IGDKF+S HGQKGV L +
Sbjct: 846 LLHTEKGIVEKVVLSATDDGT--NSAFVTLRQTRSPRIGDKFASMHGQKGVIGFLDSQEN 903
Query: 873 MPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
PF+ G+ PD++INPH FP+R T LLE+ K
Sbjct: 904 FPFTH-QGIVPDIVINPHGFPTRQTPGQLLEAALGK 938
>gi|412992275|emb|CCO19988.1| DNA-directed RNA polymerase III subunit RPC2 [Bathycoccus prasinos]
Length = 1251
Score = 207 bits (526), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 185/681 (27%), Positives = 300/681 (44%), Gaps = 89/681 (13%)
Query: 274 VIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLK 333
V+ ++ V D K + M++++ + D+ D N+ + L G L+ + +
Sbjct: 412 VVLAHVPVEDYDFRGKSAYVCVMIRRILLANLNPEEVDDKDYYGNKRLELAGQLLALLFE 471
Query: 334 EKLE----DWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTG 389
+ + D R+ ++ N ++FD + K + ++ I +E + TG
Sbjct: 472 DCFKRLNADLKRQADAVLSKA--NRAQQFD------VVKCIRQD---TISNGLEHAISTG 520
Query: 390 RLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLLPESWGF 448
+ +R G T RL+F+ I + + F R S R L P WG
Sbjct: 521 NWTVKRFR--MERKGVTQVLSRLSFISAIGMMTRIT--SQFEKTRKVSGPRALQPSQWGM 576
Query: 449 LCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKL 508
LCP TP+GE CGL+ ++ V + D I+ + +L L G + L
Sbjct: 577 LCPSDTPEGESCGLVKNLALMTHVTTDSDEEPLIKLARALGCELLEHLAGEELHQKDSAL 636
Query: 509 VKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSA--ASVIPDDLEVGYVPLSLG 566
V LL+G ++G + S+ ++ R+L+ S + + + G+V ++
Sbjct: 637 V----------LLNGSILGSV--SQPKQFADKFRKLRRSGRISEFVSVHVTKGFVHIASD 684
Query: 567 GAYPGLYLFTSPPKFVRPVRNISLPSE----ESQNIELIGPFEQVFME------IRCPDG 616
G + RP+ + + + ++++ + E VF + + D
Sbjct: 685 GG-----------RVCRPLIVVDETTGRLKMKQKHLDALKNKEWVFDDFLKRGYVEYLDV 733
Query: 617 GDGGRRNAFPATHE-----------EIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQ 665
+ +A+ A HE EI P +L V A + P+ HNQSPRN YQC M KQ
Sbjct: 734 NE--ENDAYIALHEKDLTADAHTHCEIEPFTLLGVCAGIIPFPHHNQSPRNTYQCAMGKQ 791
Query: 666 TMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDME 725
MG R D +Y L + Q P+V T T D G NA++AVL+ TGYD+E
Sbjct: 792 AMGNLAFNQLNRMDTLMYTLCSAQKPLVTTKTIELIQYDRLGAGQNAVIAVLSNTGYDIE 851
Query: 726 DAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKV-DRGQKLFRRNKDAKSLHSVIDSDGL 784
DA+++N++S+DRG Q+ + + + N+ D+ K + V+D DG
Sbjct: 852 DAVVINRASLDRGFGRCQVSRKYSATMKKYANRTQDKVLKPSITQMKKMKNYRVLDDDGY 911
Query: 785 PYVGQMIHPGEPYCSIY------DKTTNSWRTNSR---------KGSE--SVFVDYVAVD 827
VG I + Y + + D TN + R +G E VD V +
Sbjct: 912 AQVGVRIRNKDIYINKHMPLNTRDPMTNPDQLPDREFRPAPQVYRGPEVDECVVDKVMLT 971
Query: 828 MKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLII 887
+ + K + RHTR P +GDKFSSRHGQKGV + P D P + G+ PDL++
Sbjct: 972 VTDENQFVVKTLV--RHTRRPEVGDKFSSRHGQKGVVGAILPQEDFPCTE-RGICPDLVM 1028
Query: 888 NPHAFPSRMTIAMLLESVAAK 908
NPH FPSRMT+ L+E +A K
Sbjct: 1029 NPHGFPSRMTVGKLIELLAGK 1049
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 71/300 (23%), Positives = 116/300 (38%), Gaps = 88/300 (29%)
Query: 9 FEPLRELVRHHIESFDYMLDEGLSEMFD-------------------------------- 36
F +R LVR HIESFDY++DE + ++
Sbjct: 59 FLKVRGLVRQHIESFDYLIDEEIKKIVSAKANNKVTCDSDPNFYLRYKNVSVGSPQTVDE 118
Query: 37 ----------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQ 86
CR ++Y +M DVE Y + G+ P+ML++ RC L+
Sbjct: 119 RMVKQDITPQQCRLRDMTYAAPVMVDVE--YTKGKDIITTHDVCIGKIPLMLRSSRCCLR 176
Query: 87 GADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKA 146
+L L E + GGYF++ G+E+V +++ +Q +S R +G +
Sbjct: 177 NKGEDELARLGECPLDPGGYFVVKGVEKV---ILIQEQ---LSKNRVIIERDAKGLICAS 230
Query: 147 VVIRC-VRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYL--------LPVGIVLKALVDTN 197
V RK +++V K GK YL +P+ I LKA+ +
Sbjct: 231 VTSSTHERKSKTNVVQK---------------GGKLYLKHNTFQEDIPIVIALKAMGLES 275
Query: 198 DLEIFNHLTCCYDEKYKKEKGAVGS-PLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQ 256
D E+ +K A GS PL + L E L + T+ + L++ G+ +
Sbjct: 276 DQELM-------------QKAAGGSDPLCMSLLAPSLQECTALDVFTQSEALEYCGQRIR 322
>gi|358378199|gb|EHK15881.1| hypothetical protein TRIVIDRAFT_206553 [Trichoderma virens Gv29-8]
Length = 1157
Score = 207 bits (526), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 124/312 (39%), Positives = 162/312 (51%), Gaps = 44/312 (14%)
Query: 627 ATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQ 686
TH EI P +L VA L P+ HNQSPRN YQC M KQ +G R D LY L
Sbjct: 672 TTHLEIEPFTLLGAVAGLIPFPHHNQSPRNTYQCAMGKQAIGAIAHNQFNRIDTLLYTLV 731
Query: 687 TPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQ 746
PQ P+V T T D+ P G NA V V++Y+GYD+EDA++LNK+S+DRG Q+++
Sbjct: 732 YPQRPMVITKTIQLIHYDKLPAGQNATVVVMSYSGYDIEDALVLNKASIDRGFGRCQVFR 791
Query: 747 TETIDL-----------SDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGE 795
T +L D N++D G + RR K H +D DGL VGQ IH GE
Sbjct: 792 KYTTELQKYPNGRRERIGDPLNEIDNG--VMRRIKK----HEALDDDGLAIVGQRIHSGE 845
Query: 796 PYC-------------------SIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQ 836
S Y T S+R ++ ++D V +
Sbjct: 846 AMVKKETPLDMTTTGIGLDRGPSEYRDTAVSYRI-----ADPAYIDKVMISQTEKDTTVI 900
Query: 837 KANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRM 896
K ++ R TR P +GDKFSSRHGQKGV + DMPF+ +G+ PD+I+NPH FPSRM
Sbjct: 901 K--VQTRQTRRPELGDKFSSRHGQKGVVGIIVDQEDMPFAD-SGLCPDIIMNPHGFPSRM 957
Query: 897 TIAMLLESVAAK 908
T+ LLE + K
Sbjct: 958 TVGKLLECLTGK 969
Score = 106 bits (264), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 103/456 (22%), Positives = 193/456 (42%), Gaps = 57/456 (12%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR ++Y + D+ Y+ +VR+ G+ P+MLK+ +C L GA++ ++ +
Sbjct: 109 CRLRDMTYAAPIFVDIA--YIRDKQKIVRKNVPLGRMPIMLKSCKCRLSGANNSQMEQMN 166
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
E + GGYFI+NG E+ VIL ++ + V ++ + RK ++
Sbjct: 167 ECPLDPGGYFIVNGTEK----VILIQEQLSKNRVIVEADEKNNVISASVTSSTHERKSKT 222
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
VTLK + ++ ++G +P+ I+LKAL +D EI L D +Y+ E
Sbjct: 223 YVTLKKDKI---TLTHNILVEG----IPIVIILKALGGLSDYEIM-QLVAGSDGRYQDE- 273
Query: 218 GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQ---------------PVIDGL 262
+ E + T+ Q L++IG + V +GL
Sbjct: 274 -----------FLVNFDEAAKAGIFTQHQALEYIGSRVKMGSRKGQFGAQARRNNVEEGL 322
Query: 263 QSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEIL 322
+ + +A I F K + M +++ + D+ D + N+ +
Sbjct: 323 DALANLIIAHVPIEGLDFY------PKAIYVAMMTRRVLMASQDPKLVDDRDFVGNKRLE 376
Query: 323 LPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSI 382
L G L+++ ++ + ++ + K I ++ N + + M N + IG I
Sbjct: 377 LAGQLLSLLFEDLFKRFMGEVKMSIDKFLKKNNRAVPLDAVH-----MISNHANSIGLGI 431
Query: 383 ETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKL 441
+++G + + ++ RAG T RL+++ + + + F R S R L
Sbjct: 432 NRAIQSGNWSVKR-FNM-NRAGVTHVLSRLSYISALGMMTRI--SSQFEKTRKVSGPRAL 487
Query: 442 LPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYD 477
P WG LCP TP+GE CGL+ ++ + + D
Sbjct: 488 QPSQWGMLCPSDTPEGEACGLVKNLALMTHITTNVD 523
>gi|24370467|emb|CAC70148.1| putative RNA polymerase B [Brugia malayi]
Length = 453
Score = 207 bits (526), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 126/391 (32%), Positives = 205/391 (52%), Gaps = 23/391 (5%)
Query: 38 CRQAKISYTGKLMADVEFQY----LDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKL 93
CRQ ++Y G L VE + +D +V G+ P+MLK+ RCHL+ ++L
Sbjct: 74 CRQRGLTYRGPLKVSVEIRLNGVKMDFCEVIV------GEVPIMLKSNRCHLRWLTREQL 127
Query: 94 VSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVR 153
V+ EE E GGYFI G E+V R ++ ++NYP+ +VR SFR++ +T ++IRCVR
Sbjct: 128 VAHGEEGTEKGGYFICKGTEKVIRLLVANRRNYPIGIVRRSFREKGPLFTQYGMMIRCVR 187
Query: 154 KDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKY 213
+ S+V + L+YL +G++ + + + + LP V+K+L ND I H+ C
Sbjct: 188 GNYSAVMMTLHYLESGTIVIALQYRRELFYLPFMYVIKSLTSMNDQCIMEHMIRCRP--- 244
Query: 214 KKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQS--ESYYAVA 271
G V +LA D + + L IG F+ E V
Sbjct: 245 -------GDHFWKGCVTAMLALCNDDGVVNQKTALTAIGARFRVATQDRVGPWEISEDVG 297
Query: 272 ETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIY 331
++R + +HL+++ DKF LL +M QKL +L +++PD+ Q QE + GH++ +
Sbjct: 298 RFLLRVCVAIHLDNDEDKFFLLSYMAQKLIALAKGECAAESPDNPQFQEAAVSGHILLLI 357
Query: 332 LKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRL 391
++E+LE+ L ++ I+ E + + F + + + M S +I +E + TG L
Sbjct: 358 IRERLENTLSIARRKIELEAKRKAESF-LLSSHELIRAMGTQRSGEITRGLEYFIATGNL 416
Query: 392 ATQTGLDLQQRAGYTVQAERLNFLRFISFFR 422
T+ GL LQQ G++V AER+N LRF+S FR
Sbjct: 417 ITKGGLTLQQNNGFSVIAERINQLRFVSHFR 447
>gi|358396944|gb|EHK46319.1| hypothetical protein TRIATDRAFT_132468 [Trichoderma atroviride IMI
206040]
Length = 1157
Score = 206 bits (525), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 124/312 (39%), Positives = 163/312 (52%), Gaps = 44/312 (14%)
Query: 627 ATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQ 686
TH EI P +L VA L P+ HNQSPRN YQC M KQ +G R D LY L
Sbjct: 672 TTHLEIEPFTLLGAVAGLIPFPHHNQSPRNTYQCAMGKQAIGAIAHNQFNRIDTLLYTLV 731
Query: 687 TPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQ 746
PQ P+V T T D+ P G NA V V++Y+GYD+EDA++LNK+S+DRG Q+++
Sbjct: 732 YPQRPMVITKTIQLIHYDKLPAGQNATVVVMSYSGYDIEDALVLNKASIDRGFGRCQVFR 791
Query: 747 TETIDL-----------SDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGE 795
T +L D N+V+ G + RR K H +D+DGL VGQ IH GE
Sbjct: 792 KYTTELQKYPNGRRERVGDPVNEVENG--VMRRIKK----HEALDADGLAIVGQRIHSGE 845
Query: 796 PYC-------------------SIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQ 836
S Y T S+R ++ ++D V +
Sbjct: 846 AMVKKETPLDMTTTGIGLDRGPSEYRDTAVSYRI-----ADPAYIDKVMISQTEKDTTVI 900
Query: 837 KANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRM 896
K ++ R TR P +GDKFSSRHGQKGV + DMPF+ +G+ PD+I+NPH FPSRM
Sbjct: 901 K--VQTRQTRRPELGDKFSSRHGQKGVVGIIVDQEDMPFAD-SGLCPDIIMNPHGFPSRM 957
Query: 897 TIAMLLESVAAK 908
T+ LLE + K
Sbjct: 958 TVGKLLECLTGK 969
Score = 105 bits (263), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 103/453 (22%), Positives = 192/453 (42%), Gaps = 57/453 (12%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR ++Y + D+ Y+ +VR+ G+ PVMLK+ +C L GA++ ++ +
Sbjct: 109 CRLRDMTYAAPIFVDI--AYIRDKQKIVRKNVPLGRMPVMLKSCKCRLSGANNSEMEKMN 166
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
E + GGYFI+NG E+ VIL ++ + V ++ + RK ++
Sbjct: 167 ECPLDPGGYFIVNGTEK----VILIQEQLSKNRVIVEADEKNNVISASVTSSTHERKSKT 222
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
VTLK ++ + ++G +P+ I+LKAL +D EI L D +Y+ E
Sbjct: 223 YVTLKKDKIV---LTHNILVEG----IPIVIILKALGGLSDYEIM-QLVAGSDGRYQDE- 273
Query: 218 GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQ---------------PVIDGL 262
+ E + T+ Q L++IG + V +GL
Sbjct: 274 -----------FLVNFDEAAKAGIFTQHQALEYIGSRVKMGSRRGQFGAQARRNNVEEGL 322
Query: 263 QSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEIL 322
+ + +A I F K + M +++ + D+ D + N+ +
Sbjct: 323 DALANLIIAHVPIEGLDFY------PKAIYVAMMTRRVLMASQDNKLVDDRDFVGNKRLE 376
Query: 323 LPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSI 382
L G L+++ ++ + ++ + K I ++ N + + M N + IG I
Sbjct: 377 LAGQLLSLLFEDLFKRFMGEVKMSIDKFLKKNNRAVPLDAVH-----MISNHANSIGLGI 431
Query: 383 ETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKL 441
+++G + + ++ RAG T RL+++ + + + F R S R L
Sbjct: 432 NRAIQSGNWSVKR-FNM-NRAGVTHVLSRLSYISALGMMTRI--SSQFEKTRKVSGPRAL 487
Query: 442 LPESWGFLCPVHTPDGEPCGLLNHMTSTCRVAS 474
P WG LCP TP+GE CGL+ ++ + +
Sbjct: 488 QPSQWGMLCPSDTPEGEACGLVKNLALMTHITT 520
>gi|389624163|ref|XP_003709735.1| DNA-directed RNA polymerase III subunit RPC2 [Magnaporthe oryzae
70-15]
gi|351649264|gb|EHA57123.1| DNA-directed RNA polymerase III subunit RPC2 [Magnaporthe oryzae
70-15]
gi|440467179|gb|ELQ36417.1| DNA-directed RNA polymerase III subunit RPC2 [Magnaporthe oryzae
Y34]
gi|440480743|gb|ELQ61392.1| DNA-directed RNA polymerase III subunit RPC2 [Magnaporthe oryzae
P131]
Length = 1158
Score = 206 bits (525), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 122/305 (40%), Positives = 163/305 (53%), Gaps = 21/305 (6%)
Query: 622 RNAFPA-THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQ 680
++ PA TH EI P +L VA L P+ HNQSPRN YQC M KQ +G R D
Sbjct: 669 KDVTPAHTHLEIEPFTILGAVAGLIPFPHHNQSPRNTYQCAMGKQAIGAIAYNQFNRIDT 728
Query: 681 KLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMC 740
LY L PQ P+V T T D+ P G NA V V++Y+GYD+EDA++LNK+S DRG
Sbjct: 729 LLYTLVYPQRPMVITKTIELIHYDKLPAGQNATVVVMSYSGYDIEDALVLNKASCDRGFG 788
Query: 741 HGQIYQTETIDLSDDGNKVDR---GQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPY 797
Q+++ T +L N G ++ R ++ IDSDGL VG IH GE
Sbjct: 789 RCQVFRKHTAELQTYANNKSEKISGPEIDERTGKPAEKYAAIDSDGLARVGYRIHSGEVM 848
Query: 798 CSIY------------DKTTNSWRTN--SRKGSESVFVDYVAVDMKNSKNLPQKANIRFR 843
D +N +R S + S ++D V V +++ A ++ R
Sbjct: 849 LRKLTPIDQGSTGIGNDVGSNDYRETSLSYRVSNPSYIDKVMVSQTEKEHI--LAKVQTR 906
Query: 844 HTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLE 903
TR P +GDKFSSRHGQKGV + DMPF+ +G+ PD+I+NPH FPSRMT+ L E
Sbjct: 907 QTRRPELGDKFSSRHGQKGVVGIIVEQEDMPFAD-SGLVPDIIMNPHGFPSRMTVGKLFE 965
Query: 904 SVAAK 908
+ K
Sbjct: 966 CLTGK 970
Score = 94.7 bits (234), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 98/453 (21%), Positives = 186/453 (41%), Gaps = 49/453 (10%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR ++Y + D+ Y V+R+ G+ P+MLK+ C L GA++ ++ +
Sbjct: 110 CRLRDMTYAAPIKVDI--AYFRDKKKVLRKNVTLGRMPIMLKSSNCWLSGANNAEMEDMN 167
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
E + GGYFI+NG E+ VIL ++ + V ++ + RK ++
Sbjct: 168 ECPLDPGGYFIINGTEK----VILIQEQLSKNRVIVEADEKNNVISASVTSSTHERKSKT 223
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
VTLK R+ +P+ I+LKAL D EI L D +Y+ +
Sbjct: 224 YVTLK-------KERITLAHNTLVEPIPIAIILKALGGLPDHEII-QLVAGEDARYQDD- 274
Query: 218 GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQS------------E 265
+ + + T+ Q L++IG + + ++ E
Sbjct: 275 -----------FAVNFDDAARAGVFTQQQSLEYIGSRVKMGSNRFKTPGGQAPRRNNAEE 323
Query: 266 SYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPG 325
A+A +I + L+ + + + + L + DH V D D + N+ + L G
Sbjct: 324 GLEALANMIIGHVPILDLDFYPKACYVAMMVRRVLMAAHDHKLVDDR-DFVGNKRLELAG 382
Query: 326 HLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETM 385
++++ ++ + +L + I + + + F L +I S I +
Sbjct: 383 QMLSLLFEDLFKKFLVDLRFNIDKVLRKSNRGVAFDPLNSITAT-----SGHITAGMNRA 437
Query: 386 LKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLLPE 444
+ +G + ++ RAG T RL+++ + + + F R S R L P
Sbjct: 438 ISSGNWTVKR-FNM-NRAGVTHVLSRLSYISALGMMTRI--SSQFEKTRKVSGPRALQPS 493
Query: 445 SWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYD 477
WG LC TP+GE CGL+ ++ + ++++
Sbjct: 494 QWGMLCTSDTPEGEACGLVKNLALMTHITTHFE 526
>gi|297791275|ref|XP_002863522.1| hypothetical protein ARALYDRAFT_917015 [Arabidopsis lyrata subsp.
lyrata]
gi|297309357|gb|EFH39781.1| hypothetical protein ARALYDRAFT_917015 [Arabidopsis lyrata subsp.
lyrata]
Length = 1165
Score = 206 bits (525), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 125/300 (41%), Positives = 166/300 (55%), Gaps = 23/300 (7%)
Query: 627 ATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQ 686
TH EI P +L VVA L PY HNQSPRN YQC M KQ MG R D LY L
Sbjct: 679 TTHIEIEPFTILGVVAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLNRMDTLLYLLV 738
Query: 687 TPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQ 746
PQ P++ T T G D+ G NA VAV++ +GYD+EDA+++NKSS+DRG + +
Sbjct: 739 YPQRPLLTTRTIELVGYDKLGAGQNATVAVMSNSGYDIEDAIVMNKSSLDRGFGRCIVMK 798
Query: 747 --TETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGE-------PY 797
T ++G VDR R DA+ + ++D DG+ G++I P + P
Sbjct: 799 KIVATCQKYENGT-VDRILMPQRTGPDAEKMQ-ILDDDGIASPGEIIRPNDVYIYKQIPV 856
Query: 798 CSIYDKTTNSWRTNSRKGSESVF---------VDYVAVDMKNSKNLPQKANIRFRHTRNP 848
C+ DK T+ + + + F VD VA+ S +L K I RHTR P
Sbjct: 857 CTTRDKITSPLSDSQYRPAREFFKGPEGETQVVDRVALCSDKSGSLCIKYII--RHTRRP 914
Query: 849 IIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
+GDKFSSRHGQKGVC + D PFS + G+ PDLI+NPH FPSRMT+ ++E + +K
Sbjct: 915 ELGDKFSSRHGQKGVCGTIIQQEDFPFSEL-GICPDLIMNPHGFPSRMTVGKMIELLGSK 973
Score = 107 bits (266), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 117/520 (22%), Positives = 212/520 (40%), Gaps = 94/520 (18%)
Query: 8 DFEPLRELVRHHIESFDYMLDEGL------------------------------------ 31
+F +R LV+ H++SF+Y ++ G+
Sbjct: 38 EFLKVRGLVKQHLDSFNYFINVGIKKIVHANCRIASVTDPSIYLRFKNVRVGEPSIMNIN 97
Query: 32 --SEMFDH-CRQAKISYTGKLMADVEFQYLDAGSPV--VRERFNFGQFPVMLKTRRCHLQ 86
E+ H CR A ++Y + ++E+ + G V+ F G+ P+ML++ RC L
Sbjct: 98 ISEEINPHMCRLADMTYAAPIYVNIEYVHGSHGKKATSVKNDFIIGRMPIMLRSCRCVLH 157
Query: 87 GADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKA 146
G D ++L L E + GGYF++ G E+V +++ +Q +S R ++G + +
Sbjct: 158 GKDEEELARLGECPLDPGGYFVIKGTEKV---LLIQEQ---LSKNRIIIDSDKKGNINAS 211
Query: 147 VVIRC-VRKDQSSVTL---KLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIF 202
V + K ++ + + K+Y L+ V+ +P+ IVLKA+ +D EI
Sbjct: 212 VTSSTEMTKSKTVIQMEKEKIYLFLHQFVK----------KIPIVIVLKAMGMESDQEIV 261
Query: 203 NHLTCCYDEKYKKEKGAVG-SPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDG 261
VG P S + + E + T+ Q L ++ + G
Sbjct: 262 Q---------------MVGRDPRFSASLLPSIEECVSEGVNTQKQALDYLEAKVKKTSYG 306
Query: 262 LQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIF----MLQKLFSLVDHTSVSDNPDSLQ 317
E A ++RD H+ ++ F F ML+++ + + D+ D +
Sbjct: 307 PPPEK-DGRALYILRDLFLAHVPVRDNNFRQKCFYVGVMLRRMIEAMLNKDSMDDKDYVG 365
Query: 318 NQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIE--NNGKKFDFFNLANIKKVMEKNPS 375
N+ + L G L+++ ++ + L + K + + + +FDF + + +
Sbjct: 366 NKRLELSGQLMSLLFEDLFKTMLSEAIKKVDAILSKPSRASRFDFS-----QYLTTGDSQ 420
Query: 376 KQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRT 435
I +E L TG + R G T RL+F+ + F + F R
Sbjct: 421 NTISVGLERTLSTGNFDIKRF--RMHRKGMTQVLTRLSFIGSLGFITKI--SPQFEKSRK 476
Query: 436 TS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVAS 474
S R L P WG LCP TP+GE CGL+ ++ V +
Sbjct: 477 VSGPRSLQPSQWGMLCPCDTPEGESCGLVKNLALMTHVTT 516
>gi|340517820|gb|EGR48063.1| predicted protein [Trichoderma reesei QM6a]
Length = 1158
Score = 206 bits (524), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 123/312 (39%), Positives = 163/312 (52%), Gaps = 44/312 (14%)
Query: 627 ATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQ 686
TH EI P +L VA L P+ HNQSPRN YQC M KQ +G R D LY L
Sbjct: 673 TTHLEIEPFTLLGAVAGLIPFPHHNQSPRNTYQCAMGKQAIGAIAHNQFNRIDTLLYTLV 732
Query: 687 TPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQ 746
PQ P+V T T D+ P G NA V V++Y+GYD+EDA++LNK+S+DRG Q+++
Sbjct: 733 YPQRPMVITKTIQLIHYDKLPAGQNATVVVMSYSGYDIEDALVLNKASIDRGFGRCQVFR 792
Query: 747 TETIDL-----------SDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGE 795
T +L D N+++ G + RR K H +D+DGL VGQ IH GE
Sbjct: 793 KYTTELQKYPNGRRERIGDPVNEIENG--VMRRIKK----HEALDADGLAVVGQRIHSGE 846
Query: 796 PYC-------------------SIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQ 836
S Y T S+R ++ ++D V +
Sbjct: 847 AMVKKETPLDMTTTGIGLDRGPSEYRDTAVSYRI-----ADPAYIDKVMISQTEKDTTVI 901
Query: 837 KANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRM 896
K ++ R TR P +GDKFSSRHGQKGV + DMPF+ +G+ PD+I+NPH FPSRM
Sbjct: 902 K--VQTRQTRRPELGDKFSSRHGQKGVVGIIVDQEDMPFAD-SGLCPDIIMNPHGFPSRM 958
Query: 897 TIAMLLESVAAK 908
T+ LLE + K
Sbjct: 959 TVGKLLECLTGK 970
Score = 107 bits (266), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 105/456 (23%), Positives = 192/456 (42%), Gaps = 57/456 (12%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR ++Y + D+ Y+ +VR+ G+ PVMLK+ +C L GA++ ++ +
Sbjct: 110 CRLRDMTYAAPIFVDI--AYIRDKQKIVRKNVPLGRMPVMLKSCKCRLSGANNSQMEQMN 167
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
E + GGYFI+NG E+ VIL ++ + V ++ + RK ++
Sbjct: 168 ECPLDPGGYFIVNGTEK----VILIQEQLSKNRVIVEADEKNNVISASVTSSTHERKSKT 223
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
VTLK ++ + ++G +P+ IVLKAL +D EI L D +Y+ E
Sbjct: 224 YVTLKKDKIV---LTHNILVEG----VPIVIVLKALGGLSDYEIM-QLVAGSDGRYQDE- 274
Query: 218 GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQ---------------PVIDGL 262
+ E + T+ Q L++IG + V +GL
Sbjct: 275 -----------FLVNFDEAAKAGIFTQQQALEYIGSRVKMGSKKGQFGAQARRNNVEEGL 323
Query: 263 QSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEIL 322
+ + +A I F K + M +++ + D+ D + N+ +
Sbjct: 324 DALANLIIAHVPIEGLDFY------PKAIYVAMMTRRVLMASQDPKLVDDRDFVGNKRLE 377
Query: 323 LPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSI 382
L G L+++ ++ + ++ + K I ++ N + + M N + IG I
Sbjct: 378 LAGQLLSLLFEDLFKRFMSEVKMSIDKFLKKNNRAVPLDAVH-----MISNHANSIGLGI 432
Query: 383 ETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKL 441
+++G + ++ RAG T RL+++ + + + F R S R L
Sbjct: 433 NRAIQSGNWTVKR-FNM-NRAGVTHVLSRLSYISALGMMTRI--SSQFEKTRKVSGPRAL 488
Query: 442 LPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYD 477
P WG LCP TP+GE CGL+ ++ + + D
Sbjct: 489 QPSQWGMLCPSDTPEGEACGLVKNLALMTHITTNVD 524
>gi|396941957|gb|AFN89695.1| RNA polymerase II, partial [Trigonopsis variabilis]
Length = 757
Score = 206 bits (524), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 203/726 (27%), Positives = 303/726 (41%), Gaps = 114/726 (15%)
Query: 261 GLQSESYYAVAETVIRDYIFVHLNDNND----KFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
G+ E A +++ + H+ K L +M+ ++ + + D+ D
Sbjct: 18 GINKEKRLRYARDILQKELLPHITQEEGFETRKAFFLGYMVHRMLLVAMGRAEVDDRDHF 77
Query: 317 QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
+ + L G L+ ++ R + +Q +E N FNL K S
Sbjct: 78 GKKRLDLAGPLLAKLFRDLFRKLTRDVYRYMQKCVETNKD----FNLTLAVK------SN 127
Query: 377 QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
I + L TG Q + RAG + R F +S R + G +
Sbjct: 128 TITNGLRYSLATGNWGDQKKF-MSARAGVSQVLNRYTFSSTLSHLRRTNTPIGRDG-KIA 185
Query: 437 SVRKLLPESWGFLCPVHTPDGEPCGLLNHMT--STCRVASYYDSRGNIRDFSKMRTSILR 494
R+L WG +CP TP+G+ CGL+ +++ S V S + I+
Sbjct: 186 KPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGSPAEP-------------IIC 232
Query: 495 VLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGV-IPSSEIEKVVAHLRRLK--VSAASV 551
L GM P L V P V V ++G +GV +S + + LRR S S+
Sbjct: 233 FLEEWGMEP-LEDFVPHASPNVTRVFVNGVWIGVHRDASHLTDTMKSLRRKGDISSEVSI 291
Query: 552 IPDDLEVGY-VPLSLGGAYPGLYLFTSPPKFVRP----------VRNISLPSEESQN--- 597
I D E + + G Y L+L + P R R + EE
Sbjct: 292 IRDIREKEFRIFTDAGRVYRPLFLVDNDPDSERKGELILQKEHVSRLLEDEGEEGSGYGW 351
Query: 598 --------IELI-GPFEQVFMEIRCPDGGDGGRR----NAFPA----------------- 627
+E I G E+ M P+ + R+ NA P
Sbjct: 352 SSLVQDGVVEYIDGEEEETIMIAMTPEDLEYARQLHESNAEPKEELDPAKRVKQHLDLLT 411
Query: 628 -THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQ 686
TH EIHP+ +L + A++ P+ DHNQSPRN YQ M KQ MG + R D L
Sbjct: 412 WTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYSVRMDTMANILY 471
Query: 687 TPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIY- 745
PQ P+ T + + E P G NAIVA+L Y+GY+ ED++I+N+SS+DRG+ +
Sbjct: 472 YPQKPLATTRSMEHFKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLFRSLFFR 531
Query: 746 ----QTETIDLS--DDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCS 799
Q + +S ++ K R L ++ + +D DGL G + GE
Sbjct: 532 SYMDQERRVGMSVVEEFEKPSRADTLRLKH----GTYDKLDDDGLIAPGVRV-SGEDI-- 584
Query: 800 IYDKT-----------------TNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRF 842
I KT T + + +ES VD V + N + L + +R
Sbjct: 585 IIGKTAPIPPENEELGQRTKFHTKRDASTPLRSTESGIVDQVLL-TTNQEGL-RFVKVRM 642
Query: 843 RHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLL 902
R T+ P IGDKF+SRHGQKG + DMPF+ G+ PD+IINPHA PSRMT+A L+
Sbjct: 643 RTTKIPQIGDKFASRHGQKGTIGITYRHEDMPFTA-QGIVPDIIINPHAIPSRMTVAHLI 701
Query: 903 ESVAAK 908
E + +K
Sbjct: 702 ECLLSK 707
>gi|356520824|ref|XP_003529060.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like
[Glycine max]
Length = 1152
Score = 206 bits (524), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 119/300 (39%), Positives = 164/300 (54%), Gaps = 23/300 (7%)
Query: 627 ATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQ 686
TH EI P +L V+A L PY HNQSPRN YQC M KQ MG R D LY L
Sbjct: 666 TTHIEIEPFTILGVIAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAFNQLRRMDSLLYLLV 725
Query: 687 TPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQ 746
PQ P++ T T G D+ G NA VAV++Y+GYD+EDA+++NK+S+DRG + +
Sbjct: 726 YPQRPLLTTKTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKASLDRGFGRCIVMK 785
Query: 747 TETIDLSDDGNKVDRGQKLFRRNK--DAKSLHSVIDSDGLPYVGQMIHPGEPYC------ 798
+ N D ++ R N+ D ++D DG+ G+++ P + Y
Sbjct: 786 KYNAIIQKHSN--DTSDRILRPNRTADTAGRMQILDDDGIAAPGEILRPYDIYINKQSPI 843
Query: 799 --------SIYDKTTNSWRTNSR--KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNP 848
S + +++R+N++ KG+ VD V + N+ K I RHTR P
Sbjct: 844 DTRTPKTGSAANLPDSAYRSNAQSFKGNGGEVVDRVVLCSDKDNNMCIKFLI--RHTRRP 901
Query: 849 IIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
+GDKFSSRHGQKGVC + P D PFS G+ PDLI+NPH FPSRMT+ ++E + K
Sbjct: 902 ELGDKFSSRHGQKGVCGTIVPQEDFPFSE-KGICPDLIMNPHGFPSRMTVGKMIELLGGK 960
Score = 103 bits (258), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 115/518 (22%), Positives = 213/518 (41%), Gaps = 104/518 (20%)
Query: 8 DFEPLRELVRHHIESFDY--------------------------------------MLDE 29
+F +R LV+ H++SF+Y M+DE
Sbjct: 52 EFLKVRGLVKQHLDSFNYFVRTDIKKIVRANDLIVASRYPHIYLRFLNVGIGKPSIMIDE 111
Query: 30 GLSEMFDH-CRQAKISYTGKLMADVEFQYLDAGSPVVRERFN--FGQFPVMLKTRRCHLQ 86
++ CR + ++Y + ADVE+ P ++ + G+ P+ML++ C L
Sbjct: 112 VTEDLTPQTCRLSDLTYAAPICADVEYTLGSHDKPDIKRKLKVEIGRMPIMLRSCCCVLH 171
Query: 87 GADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKA 146
G D +L L E + GGYF++ G E+V +++ +Q +S R ++G +
Sbjct: 172 GRDEAELAKLGECPLDPGGYFVIKGTEKV---ILIQEQ---LSKNRIIIDTDKKGNITAS 225
Query: 147 VVIRCVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKEY--LLPVGIVLKALVDTNDLEIFN 203
V + K ++ V ++ + WLQ ++ +P+ +V+KA+ +D E+
Sbjct: 226 VTSSTEKIKTKTVVVME---------KEKLWLQLNKFPKKVPLMVVMKAMGMESDQEVTQ 276
Query: 204 HLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQ 263
+ D +Y S L+ ++ E + TR Q L+++ D L+
Sbjct: 277 MVG--RDPRY--------SFLLLPSIE----ECTKCKVYTREQALEYL--------DKLE 314
Query: 264 SESYYAVAETVIRDYIFVHLNDNNDKFN----LLIFMLQKLFSLVDHTSVSDNPDSLQNQ 319
++ A +RD ++ + D F + M++++ + + D+ D + N+
Sbjct: 315 GAAFSA-----LRDVFLANVPVDQDNFRPKCIYVAVMMRRIMDAILNKDAMDDKDYVGNK 369
Query: 320 EILLPGHLITIYLKEKLEDWLRKGKKLIQDEIE--NNGKKFDFFNLANIKKVMEKNPSKQ 377
+ L G LI++ ++ + + K L +E + K FD L + +
Sbjct: 370 RLELSGQLISLLFEDLFKSMTTEVKNLTDKMLEKPDKAKNFDICTLLTRTRSI------- 422
Query: 378 IGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS 437
I +E L TG + +R G T +RL+F+ + V F R S
Sbjct: 423 ITLGLERTLSTGNFEIKRFR--MERKGMTQVLQRLSFIGALGHMTRV--SPQFEKSRKVS 478
Query: 438 -VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVAS 474
R L P WG LCP TP+GE CGL+ ++ V +
Sbjct: 479 GPRALQPSQWGMLCPCDTPEGESCGLVKNLALMTHVTT 516
>gi|449447799|ref|XP_004141655.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like
[Cucumis sativus]
Length = 1158
Score = 206 bits (523), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 127/301 (42%), Positives = 165/301 (54%), Gaps = 26/301 (8%)
Query: 627 ATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQ 686
TH EI P +L VVA L PY HNQSPRN YQC M KQ MG R D LY L
Sbjct: 673 TTHIEIEPFTILGVVAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLRRMDTLLYLLV 732
Query: 687 TPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQ 746
PQ P++ T T G D+ G NA VAV++Y+GYD+EDA+++NKSS+DRG +++
Sbjct: 733 YPQRPLLTTKTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVFK 792
Query: 747 T-ETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHP------------ 793
+++ + N DR + RN+D ++D DGL G++I P
Sbjct: 793 KYSSVNQKYENNTADRIVRP-NRNEDFTGNMQILDDDGLAAPGEIIRPNDIYVNKQSPII 851
Query: 794 --GEPYCSIYDKTTNSWRTNSR--KGSES--VFVDYVAVDMKNSKNLPQKANIRFRHTRN 847
G P I D N++R + KGSE VD VA+ + L K I R TR
Sbjct: 852 MKGSPLPGIPD---NAYRPCRQIFKGSEGEPTVVDRVALSTDKNDCLCIKFLI--RQTRR 906
Query: 848 PIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAA 907
P +GDKFSSRHGQKGVC + D PFS G+ PDLI+NPH FPSRMT+ ++E +
Sbjct: 907 PELGDKFSSRHGQKGVCGTIVQQEDFPFSE-RGICPDLIMNPHGFPSRMTVGKMIELLGG 965
Query: 908 K 908
K
Sbjct: 966 K 966
Score = 98.6 bits (244), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 118/519 (22%), Positives = 210/519 (40%), Gaps = 94/519 (18%)
Query: 8 DFEPLRELVRHHIESFDYMLD-------------------------------------EG 30
+F +R LV+ H++SF+Y ++
Sbjct: 47 EFLKVRGLVKQHLDSFNYFVNTEIKKIVKANDRIESSTDPSIYLRFLDVRIGEPSVTVNA 106
Query: 31 LSEMFD--HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFN--FGQFPVMLKTRRCHLQ 86
+SE + CR + ++Y ++ D+E+ RE+ + G+ P+ML++R C L
Sbjct: 107 VSETINPHMCRLSDLTYAAPILVDIEYIEESHAQKAPREKKDVVIGRMPIMLRSRCCVLH 166
Query: 87 GADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKA 146
G D +L L E + GGYFI+ G E+V V++ +Q +S R ++G + A
Sbjct: 167 GKDEAELARLGECPLDPGGYFIIKGTEKV---VLIQEQ---LSKNRIIIDTDKKGNIN-A 219
Query: 147 VVIRCVRKDQSSVTLKL----YYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIF 202
V +S +K+ YL +L + K +P+ +VLKA+ + E+
Sbjct: 220 SVTSSTEATKSKTVIKMENEKIYL-----QLNIFTTPK---IPIMVVLKAMGMESIQEVV 271
Query: 203 NHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGL 262
+ D +Y GA+ P + E K + T+ Q L+++ +
Sbjct: 272 QMVG--RDPRY----GALLLPSIEECAK--------EKIYTQEQALEYLETKVKKFQFAS 317
Query: 263 QSESYYAVAETVIRDYIF----VHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQN 318
A ++RD V+ N+ + K + M++++ + D+ D + N
Sbjct: 318 APPEKEGRALGILRDVFLANVPVYKNNFHPKCIYVAVMMRRMMDAILSKDAMDDKDYVGN 377
Query: 319 QEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGK--KFDFFNLANIKKVMEKNPSK 376
+ + L G LI++ ++ + + + KK I + + + +FDF N S
Sbjct: 378 KRLELSGQLISLLFEDLFKTMVSEVKKTIDKLLGKHSRSSRFDFSQHLN---------SN 428
Query: 377 QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
I +E L TG + R G + RL+F+ + V F R
Sbjct: 429 IISFGLERTLSTGNWDVKRF--RMHRKGMSQVLARLSFISTMGHVTRV--SPQFEKSRKV 484
Query: 437 S-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVAS 474
S R L P WG LCP TP+GE CGL+ ++ V +
Sbjct: 485 SGPRALQPSQWGMLCPCDTPEGEACGLVKNLALMTHVTT 523
>gi|242074526|ref|XP_002447199.1| hypothetical protein SORBIDRAFT_06g030300 [Sorghum bicolor]
gi|241938382|gb|EES11527.1| hypothetical protein SORBIDRAFT_06g030300 [Sorghum bicolor]
Length = 1239
Score = 206 bits (523), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 238/954 (24%), Positives = 402/954 (42%), Gaps = 178/954 (18%)
Query: 37 HCRQAKISYTGKLMADVEFQYLD--------AGSPVVRERFNF---------GQFPVMLK 79
H R ++Y +L +V Q G+ ++ NF G PVM+K
Sbjct: 188 HARLQNMTYASRLKVEVTIQVYSLEKSDKSKTGNEGFVQKRNFMNETHWIFIGLLPVMVK 247
Query: 80 TRRCHLQGADSQKLVSLKEEAA--EMGGYFILNGLERVF--------RSVILPKQNYPMS 129
+ C L SLKE + GGYF++ G+E+VF + + + + + M
Sbjct: 248 SNLCLLH--------SLKESECLFDAGGYFLVKGMEKVFIAQEQRCLKRLWVSDRPFWMI 299
Query: 130 MVRSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGS--VRLGFWLQGKEYLLPVG 187
+ RR + I+ V +S +GS + + F +PV
Sbjct: 300 SFMHEIKRRR-------IYIKLVESTRSED-------FSGSKVISISFLYA----TMPVW 341
Query: 188 IVLKALVDTNDLEIFN--HLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRL 245
++ AL ++D E F+ + C V + + E +L R
Sbjct: 342 LLFFALGISSDKEAFDVIDMQDC-------------DASVINTISATIKESDELCKGFRK 388
Query: 246 QCLQHIGEHFQPVIDGLQSESYYAVAETV---IRDYIFVHLNDNNDKFNLLIFMLQKLFS 302
+ + +D L S + AE+ + ++F +N N +K L +M++ L
Sbjct: 389 S------DKARQYVDELVKSSRFPPAESFDDYVARFLFPDINGNRNKAFFLGYMVKCLLM 442
Query: 303 LVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFN 362
DN D +N+ + LPG L+ L+ +L R+ K IQ ++ N+ + D
Sbjct: 443 AFTGKRKCDNKDDFRNKRLDLPGELLGRELRAQLRLLERRMVKAIQRDLNNDRELQDL-- 500
Query: 363 LANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRA----GYTVQAERLNFLRFI 418
+ I SI T +T + +RA G R N L+ +
Sbjct: 501 ------------ERYIDASIVTNGLNRAFSTGSWCHPYKRAERCSGIVATLRRTNPLQMM 548
Query: 419 SFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDS 478
S R + ++AG + R P WG LC + TPDGE CGL+ ++ T V+S
Sbjct: 549 SDLRKTRQRVAYAG-KAGDARYPNPSYWGKLCFLSTPDGENCGLVKNLAVTAIVSS---- 603
Query: 479 RGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVV 538
++ ++ I GM L + + + L+G VG S V
Sbjct: 604 --------RVGQPLIESFISCGM-SKLNDIPTEHIQRMDKIFLNGNWVGSCKDSA--SFV 652
Query: 539 AHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPV------------- 585
LR ++ S S+I +E+ + + +F+ + +RP+
Sbjct: 653 FRLRCMRRS--SMIDPQVEI-----KRDKHHKEVRVFSDAGRILRPLLVVENLNKIRKPK 705
Query: 586 -RNISLPSEESQNI-ELIGPFEQVFMEIRCPDGGDGGRRNAFPA-------THEEIHPTG 636
R+ S Q I E IG E+ +I+C G R+ F + TH E+ P+
Sbjct: 706 GRSFSFQELMQQEIIEFIGVEEE--EDIQCA----WGIRHLFESEGAISSYTHCELDPSF 759
Query: 637 MLSVVANLTPYSDHNQSPRNMYQCQM-AKQTMGFSVQALKFRADQKLYHLQTPQTPIVRT 695
++ + + P+++HN + R +YQ + ++Q +G+S R D + L PQ P+ +T
Sbjct: 760 LMGLSCGIIPFANHNFARRVLYQSEKHSQQAIGYSTTNPHIRVDTLSHQLYYPQRPLFKT 819
Query: 696 --------NTYTKYGID------EYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMC- 740
+ YT +G EY G NAIVAV + G++ ED++++N++S++RGM
Sbjct: 820 VIADCLGRSDYTAFGRKDDYTRPEYFNGQNAIVAVNVHQGFNQEDSLVMNRASLERGMFR 879
Query: 741 --HGQIYQTETIDLSDDGNKVDRGQKL-FRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPY 797
H + Y+T+ ++ D ++ +K+ F + + + +D DGLPY+G + +
Sbjct: 880 TEHLRSYKTD-VENKDGTKRLKLKEKIDFGKTESKRGRVDNLDDDGLPYIGASLQTND-- 936
Query: 798 CSIYDKTTNSWRTNS--RKGSESVFVDYVAVDMKN-SKNLPQKANIRFRHTRNPIIGDKF 854
+ K + S +S K +E V V + + KN A + R R P +GDKF
Sbjct: 937 -IVIGKVSESGEDHSIKLKHTEKGMVQKVLLSANDEGKNF---AVVTLRQVRTPCLGDKF 992
Query: 855 SSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
SS HGQKGV L + PF+ G+ PD++INPHAFP+R T LLE+ K
Sbjct: 993 SSMHGQKGVVGFLESQENFPFTH-EGIVPDIVINPHAFPTRQTPGQLLEAALGK 1045
>gi|358060336|dbj|GAA93741.1| hypothetical protein E5Q_00387 [Mixia osmundae IAM 14324]
Length = 1152
Score = 205 bits (522), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 122/297 (41%), Positives = 166/297 (55%), Gaps = 21/297 (7%)
Query: 628 THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
TH EI P +L VA L P+ HNQSPRN YQC M KQ +G R D LY +
Sbjct: 679 THLEIEPFTLLGAVAGLIPFPHHNQSPRNTYQCAMGKQAIGAIAYNQLARIDTLLYLMVY 738
Query: 688 PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
PQ P+V T T D+ P G NA+VAV++++GYD+EDA+ILN++SVDRG Q+++
Sbjct: 739 PQRPLVTTKTIELVKYDQLPAGQNAMVAVMSFSGYDIEDALILNRASVDRGFGRCQVFRK 798
Query: 748 ETIDLSDDGNKV-DRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYC---SIYDK 803
+ + N DR + D + V D+DGLP VG + G+ Y + +
Sbjct: 799 YSTYIKQYPNNTHDRLADPPPPDSDRHRKYKV-DADGLPAVGDRVKEGDIYVNKQTPSNA 857
Query: 804 TTNS---------WR--TNSRKGSESVFVDYVAV-DMKNSKNLPQKANIRFRHTRNPIIG 851
T NS WR + + + + +D V + DM+N L I R TR P +G
Sbjct: 858 TDNSSTASSMPSHWRDAVMTYRANMNGHIDKVMLSDMENGTQL---VKILMRQTRRPELG 914
Query: 852 DKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
DKFSSRHGQKGVC + P DMPF+ G+ PD+I+NPH FPSRMT+ +LE ++ K
Sbjct: 915 DKFSSRHGQKGVCGLIVPQEDMPFTD-QGICPDIIMNPHGFPSRMTVGKMLELLSGK 970
Score = 96.3 bits (238), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 106/446 (23%), Positives = 190/446 (42%), Gaps = 54/446 (12%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR ++Y + DV Y VV ++ G+ PVML++ +C L D +++ SL
Sbjct: 114 CRLRDMTYAAPIYVDV--IYAKGSRNVVSKKQLIGRIPVMLRSNKCVLWDKDPEQMQSLT 171
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
E + GGYF++ G E+V ++ + + +V + R +G RK ++
Sbjct: 172 ECPLDPGGYFVVKGTEKVI--LVQEQLSKNRVLVENDGRGPSKGIIASVTSSTLERKSKT 229
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
Y+ S ++ +P+ I LKAL D EI L C
Sbjct: 230 -------YVAEKSKKIVLRHNSLHEDVPIVIALKALGIVGDHEIM--LLVCGT------- 273
Query: 218 GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHF---QPVIDGLQSESYYAVAETV 274
SP + ER I + L + TR Q L+++G + V G + VAE
Sbjct: 274 ----SPELRERFAINFEDSTRLGIYTRTQALEYVGHRVKLSKRVAPGGNNFVRRPVAEEA 329
Query: 275 IR---DYIFVHLNDNNDKFN----LLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHL 327
+ + H+ N F + M++++ + + +++D+ D + N+ + L G L
Sbjct: 330 LELLATLVLAHVPVENLNFRPKAIYMALMIRRVLAAMLDPTMTDDRDYVGNKRLELAGQL 389
Query: 328 ITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLK 387
+++ ++ + + R K + ++ + +F L KV+ S Q G+ + ++
Sbjct: 390 LSLLFEDLFKLFNRDFKTNVDKMLKKPSRTNEFDGL----KVL----SMQTGSITDGFVR 441
Query: 388 TGRLATQTG-LDLQ----QRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKL 441
A TG L+ +RAG T RL+++ + + + F R S R L
Sbjct: 442 ----AIATGNWSLKRFRMERAGITHVLSRLSYISALGMMTRIT--SQFEKTRKVSGPRAL 495
Query: 442 LPESWGFLCPVHTPDGEPCGLLNHMT 467
WG LCP TP+GE CGL+ ++
Sbjct: 496 QASQWGMLCPSDTPEGEACGLVKNLA 521
>gi|425771289|gb|EKV09736.1| DNA-directed RNA polymerase [Penicillium digitatum Pd1]
gi|425776820|gb|EKV15021.1| DNA-directed RNA polymerase [Penicillium digitatum PHI26]
Length = 1208
Score = 205 bits (522), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 120/298 (40%), Positives = 162/298 (54%), Gaps = 21/298 (7%)
Query: 628 THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
TH EI P +L VA L PY HNQSPRN YQC M KQ +G R D LY +
Sbjct: 727 THLEIEPFTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIASNQFQRIDSILYLMVY 786
Query: 688 PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
PQ P+V++ T D+ P G NA VAV++Y+GYD+EDA++LNK SVDRG Q+++
Sbjct: 787 PQKPMVKSRTIELTKYDQLPAGQNATVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRK 846
Query: 748 ETIDLSD--DGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCS-IYDKT 804
L +G K F + H++++SDGL VG+M++ GE Y + + +
Sbjct: 847 YVTTLKSYPNGAKDSLKGPTFENGVPIRK-HALLESDGLAAVGEMVNNGESYINKVTPRV 905
Query: 805 TNSWR--------------TNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPII 850
NS + + K + ++D V V + Q + R TR P +
Sbjct: 906 QNSMGFTGSGMGGGDVIEASMNYKLPDPSYIDKVLVSATEGET--QLIKVLTRQTRRPEV 963
Query: 851 GDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
GDKFSSRHGQKGV + DMPFS G+ PD+I+NPH FPSRMT+ +LE VA K
Sbjct: 964 GDKFSSRHGQKGVVGIIADQADMPFSD-QGINPDIIMNPHGFPSRMTVGKMLELVAGK 1020
Score = 90.1 bits (222), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 102/460 (22%), Positives = 193/460 (41%), Gaps = 54/460 (11%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR +Y ++ D F+Y+ V+R G+ P+ML++ +C L ++ L
Sbjct: 169 CRLRDTTYAAPILVD--FEYVRGRQRVIRRAVPIGRIPIMLRSSKCVLSNKTPAQMSVLN 226
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
E + GGYF++NG E+ VIL ++ + + ++E RK +S
Sbjct: 227 ECPLDPGGYFVVNGTEK----VILVQEQLSKNRIIVETDPKKEIVQASVTSSSNERKSKS 282
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
Y+++ RL +P+ I+LKA+ D E+ +T
Sbjct: 283 -------YIVSKKGRLYVKHNVLNEDIPIVILLKAMGIHTDKEMMQMVTG---------- 325
Query: 218 GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQS--------ESYYA 269
L + I E ++ + T+ Q L+ IG + I+ Q+ E+ A
Sbjct: 326 ---DDSLYQDDFAINFEEAINVDVYTQQQALEWIGCRIK--INRKQAAYRKTHVQEAVEA 380
Query: 270 VAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
+A +I +I V + K + M +++ ++ D+ D L N+ + L G ++
Sbjct: 381 IASVII-SHIEVKDMNFRPKAIYVAHMARRVLMAKSDPALVDDRDYLGNKRLELAGQMLA 439
Query: 330 IYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIET---ML 386
+ ++ + + K I D++ N + + F+ I + + ++ + +I T L
Sbjct: 440 LLFEDLFKKFCFDIKMNI-DKVLNKRNRAEQFDAWTIVTMHGNHITQGMNRAISTGNWSL 498
Query: 387 KTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLLPES 445
K R+ +RAG T RL+++ + + + F R S R L P
Sbjct: 499 KRFRM---------ERAGVTHVLSRLSYIAALGMMTRI--SSQFEKTRKVSGPRALQPSQ 547
Query: 446 WGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDF 485
+G LCP TP+GE CGL+ ++ + + D G +R+
Sbjct: 548 FGMLCPADTPEGEACGLVKNLALMTHITT-NDEEGPVRNL 586
>gi|354546082|emb|CCE42811.1| hypothetical protein CPAR2_204540 [Candida parapsilosis]
Length = 1149
Score = 205 bits (522), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 122/307 (39%), Positives = 162/307 (52%), Gaps = 19/307 (6%)
Query: 618 DGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFR 677
D G TH EI P +L VA L PY HNQSPRN YQC M KQ +G R
Sbjct: 664 DIGENPNATVTHLEIEPFTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFRR 723
Query: 678 ADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDR 737
D LY + PQ P+V+T T D+ P G NA VAV++Y+GYD+EDA++LNKSS+DR
Sbjct: 724 IDTLLYFMVYPQQPMVKTKTIELINYDKLPAGQNATVAVMSYSGYDIEDALVLNKSSLDR 783
Query: 738 GMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSL--HSVIDSDGLPYVGQMIHPGE 795
G Q+ + T+ L N R +++ + + H + DGL VG I G+
Sbjct: 784 GFGRCQVVRKNTVQLKKYPNHTKDILSGMRVDENDEPIFPHRALGPDGLGEVGSRIENGQ 843
Query: 796 PYCSIYDKTTNSWRT--------NSR------KGSESVFVDYVAVDMKNSKNLPQKANIR 841
Y + T + + N R KG E +VD V M S N +
Sbjct: 844 VYANKCVPTNSGDSSLGQPQQVENHREAPLFYKGPEPSYVDQVM--MSVSDNDQALIKVL 901
Query: 842 FRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAML 901
R TR P +GDKFSSRHGQKGVC + D+PF+ G+ PD+I+NPH FPSRMT+ +
Sbjct: 902 LRQTRRPELGDKFSSRHGQKGVCGIIVQQEDLPFND-DGISPDIIMNPHGFPSRMTVGKM 960
Query: 902 LESVAAK 908
+E ++ K
Sbjct: 961 IELISGK 967
Score = 103 bits (256), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 115/518 (22%), Positives = 214/518 (41%), Gaps = 93/518 (17%)
Query: 9 FEPLRELVRHHIESFDYMLDEGLSEMFD-------------------------------- 36
F ++ LV+ H++SF+Y +D L ++
Sbjct: 43 FLKIKGLVKQHLDSFNYFVDVDLKKILKANSLVLSDVDPDFYVKYIDIRVGHKSTSPPGT 102
Query: 37 --------HCRQAKISYTGKLMADVEFQYLDAGSPVVRE-RFNFGQFPVMLKTRRCHLQG 87
CR ++Y+ + DVE+ G ++R G+ P+ML++ +C L G
Sbjct: 103 KEVILPPHECRLRDLTYSAPIYVDVEYT---RGRKIIRHYDLEIGRMPIMLRSNKCMLDG 159
Query: 88 ADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAV 147
D + + + E + GGYFI+NG E+V +++ +Q ++ + D ++G +V
Sbjct: 160 MDDKMMAQVDECPLDPGGYFIVNGTEKV---ILVQEQLSKNRIIVEA--DEKKGIVQASV 214
Query: 148 VIRC-VRKDQSSVTLK--LYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNH 204
RK ++ V K YL + S+ +P+ IVLKA T+DLEI
Sbjct: 215 TSSTHERKSKTYVITKNDKIYLKHNSISED---------IPIVIVLKAAGVTSDLEIL-Q 264
Query: 205 LTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQ-------P 257
L C + Y+ + + E L + T+ Q L ++G+ + P
Sbjct: 265 LVCGSNSNYQ------------DLFVVNFEEAAKLEVFTQQQALLYLGKRVKTIRRAGAP 312
Query: 258 VIDGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQ 317
+ LQ E A+A T+I V L +K + M +++ + + + D+ D +
Sbjct: 313 KLSQLQ-EGIEAIATTIIAHLTVVDLQ-FREKALYMAVMARRVIMAMHNPKMVDDRDYVG 370
Query: 318 NQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQ 377
N+ + L G L+++ ++ + + K I ++ + +F L +I S
Sbjct: 371 NKRLELAGQLMSLLFEDLFKKFNSDFKANIDKILKKPSRTSEFDALLSINI-----HSNN 425
Query: 378 IGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS 437
I + + TG + + +RAG T RL+++ + + + F R S
Sbjct: 426 ITMGLNRAISTGNWSLKRF--KMERAGVTHVLSRLSYISALGMMTRI--SSQFEKSRKVS 481
Query: 438 -VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVAS 474
R L P +G LC TP+GE CGL+ ++ + +
Sbjct: 482 GPRALQPSQFGMLCTADTPEGEACGLVKNLALMTHITT 519
>gi|330040234|ref|XP_003239811.1| DNA-directed RNA polymerase II second largest subunit [Cryptomonas
paramecium]
gi|327206736|gb|AEA38913.1| DNA-directed RNA polymerase II second largest subunit [Cryptomonas
paramecium]
Length = 1209
Score = 205 bits (521), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 246/980 (25%), Positives = 407/980 (41%), Gaps = 164/980 (16%)
Query: 36 DHCRQAKISYTGKLMADVEFQYLDAGSPVVRER-FNF---------GQFPVMLKTRRCHL 85
+ R +SY+ L D+ ++ + +ER NF G+ P+M+K+R C L
Sbjct: 100 NEARLRSLSYSSPLYCDISVTTVNVTNEHEKERELNFKQEKQKILLGRIPIMIKSRFCIL 159
Query: 86 QGADSQKLVSLKEEAAEMGGYFILNGLERVFRS---------VILPKQNYPMSMVRSSFR 136
L +L E ++GGYFI+NG E+V + + K+ S+ +S F
Sbjct: 160 DKLLPMTLQNLGECNLDLGGYFIINGSEKVIVAQEKMAWNYVYVFEKKKENNSVDKSFFL 219
Query: 137 DRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFW--------LQGKEYL----- 183
D + + + I K S+T+ + LN + GK Y+
Sbjct: 220 DLKNLFFAECRSISEFGKWSPSLTI-IKICLNKFRKKKIAKKENSFSHFTGKFYIRVVLP 278
Query: 184 -----LPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQD 238
+PV + KAL ++ EI ++ CYD + + E V+ IL +
Sbjct: 279 YFKSDVPVTWIFKALGFEDETEIIPYI--CYDNTNEN---------LIELVRNILKDDHF 327
Query: 239 LSLTTRLQC--------LQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKF 290
+ + C L IG+H G + Y + + ++ + K
Sbjct: 328 VPDNLKNDCFRLDQETSLALIGQHIFKASHGTRIRYAYEILQREFLPHVGIGQGFELRKG 387
Query: 291 NLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDE 350
+M+ KL + D+ D + + L+++ ++ + K K ++
Sbjct: 388 FFFGYMVNKLLLVQLGNKKVDDRDHYGYKRLDTVSPLLSVLFRQ----LVNKATKDLRMS 443
Query: 351 IE--NNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQ 408
+E N +K + F +++I K I T + L TG +T + G +
Sbjct: 444 LEKKTNLEK-NTFQISDIFKF------NLITTGMFYSLATGNWSTNGQ---TMKTGVSQV 493
Query: 409 AERLNFLRFISFFRAVHR-GASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHM- 466
R+N++ +S R ++ G + + L T R+L WG +CPV TP+G CGL+ ++
Sbjct: 494 LNRINYMSTLSHLRKINSTGINVSKL--TKPRQLHNTYWGLICPVETPEGHSCGLVKNLA 551
Query: 467 --------TSTCRVASYYDSRGNIRDFSKMRTSILR---------VLIGVGMIP-----S 504
+S+ V + + I++F++++ +R IGV P +
Sbjct: 552 ISAYITLGSSSMPVFEFLEEL-KIKNFNEIKVQNIRFYYKIFLNDCWIGVYDKPDTIAKT 610
Query: 505 LPKLVKSGPP-AVLSVLL------------DGRVVGVIPSSEIEKVVAHLRRLKVSAASV 551
L +SG LSV++ GRV + SE+ K + + V + SV
Sbjct: 611 LRCFRRSGNTNQELSVIIFHKDKEIKIYTDAGRVCRPLIVSELVKFNKKNQYI-VKSISV 669
Query: 552 IPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRN--ISLPSEESQNIELIGPFEQVFM 609
+ +V L++G + F +RN I E + +IG + VF
Sbjct: 670 NQYNFDV----LTIG----------NKCTFTELIRNGLIEFIDAEEEKTCVIGMY--VFE 713
Query: 610 EIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGF 669
I+ N TH EIHP+ ++ + A+ P+S HNQSPRN YQ M KQ++G
Sbjct: 714 GIK-------NINNLITFTHFEIHPSMIMGICASFIPFSHHNQSPRNTYQAAMGKQSIGI 766
Query: 670 SVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMI 729
+ R D + L PQ P+V T +P G NAIVA YTGY+ ED++I
Sbjct: 767 YSLNFQHRMDTMAHILYYPQKPLVTTRFLNYSASKNFPNGINAIVATACYTGYNQEDSII 826
Query: 730 LNKSSVDRGMCHGQIYQT-------------ETIDLSDD----GNKVDRGQKL----FRR 768
+++ S+DRG+ Y+ ET ++ + G K+ +KL F +
Sbjct: 827 MSQDSIDRGLFRSVFYRCYRDEEKKKTNGFKETFEIPNKSECIGLKIGSYEKLDLDGFVQ 886
Query: 769 NKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDM 828
S VI +P+ + K +R V VD + +
Sbjct: 887 EGSRISGEDVIIGKTVPFTNGISQKKILKFKKNPKYKKDASILARNCEVGV-VDKIMIGT 945
Query: 829 KNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIIN 888
N + IR R R P +GDKF+SRHGQKG+ + D+PF+ GM PD+I+N
Sbjct: 946 SEYGN--RLVKIRIRSIRIPQVGDKFASRHGQKGILGMAYKQYDLPFT-TEGMSPDIIMN 1002
Query: 889 PHAFPSRMTIAMLLESVAAK 908
PHA PSRMTI + E + AK
Sbjct: 1003 PHAIPSRMTIGHVYECLLAK 1022
>gi|449523027|ref|XP_004168526.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc2-like,
partial [Cucumis sativus]
Length = 750
Score = 205 bits (521), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 126/298 (42%), Positives = 167/298 (56%), Gaps = 20/298 (6%)
Query: 627 ATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQ 686
TH EI P +L VVA L PY HNQSPRN YQC M KQ MG R D LY L
Sbjct: 281 TTHIEIEPFTILGVVAGLIPYPHHNQSPRNTYQCAMGKQAMGNIAYNQLRRMDTLLYLLV 340
Query: 687 TPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQ 746
PQ P++ T T G D+ G NA VAV++Y+GYD+EDA+++NKSS+DRG +++
Sbjct: 341 YPQRPLLTTKTIELVGYDKLGAGQNATVAVMSYSGYDIEDAIVMNKSSLDRGFGRCIVFK 400
Query: 747 T-ETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCS----IY 801
+++ + N DR + RN+D ++D DGL G++I P + Y + I
Sbjct: 401 KYSSVNQKYENNTADRIVRP-NRNEDFTGNMQILDDDGLAAPGEIIRPNDIYVNKQSPII 459
Query: 802 DKTT-------NSWRTNSR--KGSES--VFVDYVAVDMKNSKNLPQKANIRFRHTRNPII 850
K + N++R + KGSE VD VA+ + L K I R TR P +
Sbjct: 460 TKGSPLPGIPDNAYRPCRQIFKGSEGEPTVVDRVALSTDKNDCLCIKFLI--RQTRRPEL 517
Query: 851 GDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
GDKFSSRHGQKGVC + D PFS G+ PDLI+NPH FPSRMT+ ++E + K
Sbjct: 518 GDKFSSRHGQKGVCGTIVQQEDFPFS-ERGICPDLIMNPHGFPSRMTVGKMIELLGGK 574
Score = 43.9 bits (102), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 409 AERLNFLRFISFFRAVHR-GASFAGLRTTS-VRKLLPESWGFLCPVHTPDGEPCGLLNHM 466
++ L L FIS V R F R S R L P WG LCP TP+GE CGL+ ++
Sbjct: 64 SQVLARLSFISTMGHVTRVSPQFEKSRKVSGPRALQPSQWGMLCPCDTPEGEACGLVKNL 123
Query: 467 TSTCRVAS 474
V +
Sbjct: 124 ALMTHVTT 131
>gi|255950612|ref|XP_002566073.1| Pc22g21780 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211593090|emb|CAP99466.1| Pc22g21780 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 1208
Score = 205 bits (521), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 120/298 (40%), Positives = 162/298 (54%), Gaps = 21/298 (7%)
Query: 628 THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
TH EI P +L VA L PY HNQSPRN YQC M KQ +G R D LY +
Sbjct: 727 THLEIEPFTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIASNQFQRIDSILYLMVY 786
Query: 688 PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
PQ P+V++ T D+ P G NA VAV++Y+GYD+EDA++LNK SVDRG Q+++
Sbjct: 787 PQKPMVKSRTIELTKYDQLPAGQNATVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRK 846
Query: 748 ETIDLSD--DGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCS-IYDKT 804
L +G K F + H++++SDGL VG+M++ GE Y + + +
Sbjct: 847 YVTTLKSYPNGAKDSLRAPTFENGAPIRK-HALLESDGLAAVGEMVNNGETYINKVTPRV 905
Query: 805 TNSWRTN--------------SRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPII 850
NS + + K + ++D V V + Q + R TR P +
Sbjct: 906 QNSLGFSGPDIGGGDVLEAPMNYKLPDPSYIDKVLVSATEGET--QLIKVLTRQTRRPEV 963
Query: 851 GDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
GDKFSSRHGQKGV + DMPFS G+ PD+I+NPH FPSRMT+ +LE VA K
Sbjct: 964 GDKFSSRHGQKGVVGIIADQADMPFSD-QGINPDIIMNPHGFPSRMTVGKMLELVAGK 1020
Score = 87.4 bits (215), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 101/460 (21%), Positives = 192/460 (41%), Gaps = 54/460 (11%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR +Y ++ D F+Y+ V+R G+ P+ML++ +C L ++ L
Sbjct: 169 CRLRDTTYAAPILVD--FEYVRGRQRVIRRAVPIGRIPMMLRSSKCVLSNKTPAQMSVLN 226
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
E + GGYF++NG E+ VIL ++ + + +++ RK +S
Sbjct: 227 ECPLDPGGYFVVNGTEK----VILVQEQLSKNRIIVETDPKKDIVQASVTSSSNERKSKS 282
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
Y+++ RL +P+ I+LKA+ D E+ +T
Sbjct: 283 -------YIVSKKGRLYVKHNVLNEDIPIVILLKAMGIHTDKEMMQMVTG---------- 325
Query: 218 GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQS--------ESYYA 269
L + I E ++ + T+ Q L IG + I+ Q+ E+ A
Sbjct: 326 ---DDALYQDDFAINFEEAINVDVYTQQQALDWIGCRIK--INRKQAAYRKTHVQEAVEA 380
Query: 270 VAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
+A +I +I V + K + M +++ ++ D+ D L N+ + L G ++
Sbjct: 381 IASVII-SHIEVKDMNFRPKAIYVAHMARRVLMAKSDPALVDDRDYLGNKRLELAGQMLA 439
Query: 330 IYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIET---ML 386
+ ++ + + K I D++ N + + F+ I + + ++ + +I T L
Sbjct: 440 LLFEDLFKKFCFDIKMNI-DKVLNKRNRAEQFDAWTIVTMHGNHITQGMNRAISTGNWSL 498
Query: 387 KTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLLPES 445
K R+ +RAG T RL+++ + + + F R S R L P
Sbjct: 499 KRFRM---------ERAGVTHVLSRLSYIAALGMMTRI--SSQFEKTRKVSGPRALQPSQ 547
Query: 446 WGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDF 485
+G LCP TP+GE CGL+ ++ + + D G +R+
Sbjct: 548 FGMLCPADTPEGEACGLVKNLALMTHITT-NDEEGPVRNL 586
>gi|170084317|ref|XP_001873382.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164650934|gb|EDR15174.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 942
Score = 205 bits (521), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 212/789 (26%), Positives = 343/789 (43%), Gaps = 107/789 (13%)
Query: 184 LPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTT 243
+P+ +V + L +D +I H+ CYD + + + P + + I EV
Sbjct: 65 IPIWVVFRGLGVISDRDILEHI--CYDMQ-DAQMLEMLKPCIDDGFVIQDREV------- 114
Query: 244 RLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLN----DNNDKFNLLIFMLQK 299
L IG + GL E A+ +++ + H++ + K +M+ +
Sbjct: 115 ---ALDFIGN--RGTTTGLSRERRIRYAQEILQKEMLPHVSMAEGSESKKAYFFGYMIHR 169
Query: 300 LFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFD 359
L D+ D + + L G L+ + + + +Q +E + +
Sbjct: 170 LLLAALERRELDDRDHFGKKRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCVETHKE--- 226
Query: 360 FFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFIS 419
FNLA K + I ++ L TG Q + +AG + R + +S
Sbjct: 227 -FNLALAVK------HQTITNGLKYSLATGNWGDQKK-SMSSKAGVSQVLNRYTYASTLS 278
Query: 420 FFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHM---------TSTC 470
R + G + R+L WG +CP TP+G+ CGL+ ++ + +
Sbjct: 279 HLRRCNTPLGREG-KIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMACISVGSYSA 337
Query: 471 RVASYYDSRG--NIRDFSKMRTSILRVLI-GVGM---------IPSLPKLVKSG--PPAV 516
V + + G ++ + + T +V + GV M + ++ KL + P V
Sbjct: 338 PVIEFLEEWGLESLEENAHSSTPCTKVFVNGVWMGVHRDPANLVKTIKKLRRKDDISPEV 397
Query: 517 LSVLLD------------GRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLS 564
SV+ D GRV + E +++ + +K + + D E + L
Sbjct: 398 -SVVRDIREKELRLYTDAGRVCRPLFIVENQQLALQKKHVKWLSNGLNDDGDEYKWEHLV 456
Query: 565 LGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGG-DGGRR- 622
GG + L + + IS+ E+ +N L +Q +++ DG D R
Sbjct: 457 KGGI---IELLDAEEE---ETVMISMTPEDLENSRL----QQSGVDLHANDGEFDPAARL 506
Query: 623 ----NAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRA 678
+A TH EIHP+ +L + A++ P+ DHNQSPRN YQ M KQ MG + R
Sbjct: 507 KAGTHAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLIRM 566
Query: 679 DQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRG 738
D L PQ P+ T + E P G NAIVA+L Y+GY+ ED++I+N+SS+DRG
Sbjct: 567 DTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRG 626
Query: 739 MCHGQIYQTETIDLSDDG--NKVDRGQKLFRRN--KDAKSLHSVIDSDGLPYVGQ----- 789
+ IY +DL +++ +K R N + + I+ DGL G
Sbjct: 627 LFRS-IYYRSYMDLEKKSGVQQLEEFEKPTRENTLRMKHGTYDKIEDDGLIAPGTGVAGE 685
Query: 790 --MIHPGEPYCSIYDKTTNSWRTNSR-------KGSESVFVDYVAVDMKNSKNLPQK-AN 839
+I P ++ +T++R K +ES VD V + NS+ QK
Sbjct: 686 DIIIGKTAPIPPDSEELGQRTQTHTRRDVSTPLKSTESGIVDQVLI-TTNSEG--QKFVK 742
Query: 840 IRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIA 899
+R R TR P IGDKF+SRHGQKG + DMPF+ G+ PD+IINPHA PSRMTI
Sbjct: 743 VRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTA-EGIVPDIIINPHAIPSRMTIG 801
Query: 900 MLLESVAAK 908
L+E + +K
Sbjct: 802 HLVECLLSK 810
>gi|55273993|gb|AAV48867.1| RNA polymerase II second largest subunit [Armillaria mellea]
Length = 884
Score = 205 bits (521), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 215/790 (27%), Positives = 340/790 (43%), Gaps = 109/790 (13%)
Query: 184 LPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTT 243
+P+ +V +AL +D +I H+ CYD + + + P + + I EV
Sbjct: 68 IPIWVVFRALGVISDRDILEHI--CYDMQ-DAQMLEMLKPCIDDGFVIQDREV------- 117
Query: 244 RLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLN----DNNDKFNLLIFMLQK 299
L IG + GL E A+ +++ + H++ + K +M+ +
Sbjct: 118 ---ALDFIGN--RGTTTGLSRERRIRYAQEILQKEMLPHVSMSEGSESKKAYFFGYMIHR 172
Query: 300 LFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFD 359
L D+ D L + L G L+ + + R + +Q +E + +
Sbjct: 173 LLLAALERRELDDRDHLGKNRLDLAGPLLANLFRMLFRKFNRDVYRYLQKCVETHKE--- 229
Query: 360 FFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFIS 419
FN++ K + I ++ L TG Q + +AG + R + +S
Sbjct: 230 -FNVSVGVK------HQTITNGLKYSLATGNWGDQKK-SMSSKAGVSQVLNRYTYASTLS 281
Query: 420 FFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMT--STCRVASY-- 475
R + G + R+L WG +CP TP+G+ CGL+ ++ S V SY
Sbjct: 282 HLRRCNTPLGREG-KIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLALMSCISVGSYSA 340
Query: 476 -----YDSRG--NIRDFSKMRTSILRVLI-GVGM---------IPSLPKLVKSG--PPAV 516
+ G + + + T +V + GV M + ++ KL + P V
Sbjct: 341 PVIEFLEEWGLETLEENAHSATPCTKVFVNGVWMGVHRDPANLVKTIKKLRRKDDISPEV 400
Query: 517 LSVLLD------------GRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLS 564
SV+ D GRV + E +++V + +K D E + L
Sbjct: 401 -SVVRDIREKELRLYTDAGRVCRPLFIVENQQLVLQKKHIKWLVRGTNDDGEEYKWEQLI 459
Query: 565 LGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGG-DGGRR- 622
GG + L + + IS+ E+ +N L +Q ++I DG D R
Sbjct: 460 KGGV---IELLDAEEE---ETVMISMTPEDLENSRL----QQSGVDIHANDGDFDPAARL 509
Query: 623 ----NAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRA 678
NA TH EIHP+ +L + A++ P+ DHNQSPRN YQ M KQ MG + R
Sbjct: 510 KAGINAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGIYLTNFLIRM 569
Query: 679 DQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRG 738
D L PQ P+ T + E P G NAIVA+L Y+GY+ ED++I+N+SS+DRG
Sbjct: 570 DTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRG 629
Query: 739 MCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSL------HSVIDSDGL-----PYV 787
+ IY +D+ + N ++F + +L + ++ DGL V
Sbjct: 630 LFRS-IYYRSYMDV--EKNNGIHSMEVFEKPMRESTLRMKHGTYDKLEDDGLIAPGTGVV 686
Query: 788 GQMIHPGE--PYCSIYDKTTNSWRTNSR-------KGSESVFVDYVAVDMKNSKNLPQKA 838
G+ I G+ P ++ R ++R K +E VD V V +
Sbjct: 687 GEDIIIGKTAPIPPESEELGQRTRMHTRRDVSTPLKNTERGIVDQVLVTTNYEGQ--KFV 744
Query: 839 NIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTI 898
+R R TR P IGDKF+SRHGQKG + DMPF+ G+ PD+IINPHA PSRMTI
Sbjct: 745 KVRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFT-CEGIVPDIIINPHAIPSRMTI 803
Query: 899 AMLLESVAAK 908
L+E + +K
Sbjct: 804 GHLVECLLSK 813
>gi|396941945|gb|AFN89689.1| RNA polymerase II, partial [Magnusiomyces magnusii]
Length = 778
Score = 204 bits (520), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 197/698 (28%), Positives = 289/698 (41%), Gaps = 117/698 (16%)
Query: 292 LLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEI 351
L +M+ KL + S D+ D + + L G L+ + + R + +Q +
Sbjct: 67 FLGYMIHKLLLVALDRSDPDDRDHFGKKRLDLAGPLLAQLFRILFKKLTRXIYRYMQKCV 126
Query: 352 ENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAER 411
E N FNL K S I ++ L TG Q + RAG + R
Sbjct: 127 ETNKD----FNLTLAVK------SNTITNGLKYSLATGNWGDQKKA-MSTRAGVSQVLNR 175
Query: 412 LNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCR 471
F +S R + G + R+L WGF+CP TP+G+ CGL+ +++
Sbjct: 176 YTFSSTLSHLRRTNTPIGRDG-KIARPRQLHNTHWGFVCPAETPEGQACGLVKNLSLLSG 234
Query: 472 VASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGV--I 529
V+ S I+ L GM P L V P + ++G VGV
Sbjct: 235 VSVGTPS-----------NPIVCFLSEWGMEP-LEDYVPHAAPNATRIFVNGVWVGVHTX 282
Query: 530 PSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPL--SLGGAYPGLYLFTSPP------KF 581
P + + R+ +SA I D+ + + G Y L+ K
Sbjct: 283 PGAIAXTMKTLRRKGDISAEVSITRDIRSKELRILTDAGRVYRPLFXVEHEGPNKGQLKV 342
Query: 582 VRPVRNISLPSEESQNI---ELIGPFEQ-------------------------------- 606
+ + N + +E + I ++ G EQ
Sbjct: 343 TKDLVNTVIAQQEEEAIGDEDVKGDMEQHIDWEHFVKNGVIEYIDGEEEETVMIAMSNED 402
Query: 607 ----------VFMEIRCPDGGDGGRR-----NAFPATHEEIHPTGMLSVVANLTPYSDHN 651
V ME R +G RR NA TH EIHP+ +L + A++ P+ DHN
Sbjct: 403 LEYSRHAQAGVEMEFR-----EGARRSTFNPNAHTWTHCEIHPSMILGICASIIPFPDHN 457
Query: 652 QSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTN 711
QSPRN YQ M KQ MG + R D L PQ P+ T + E P G N
Sbjct: 458 QSPRNTYQSAMGKQAMGVYLTNYNVRMDTMANILYYPQKPLATTRSMEFLKFRELPAGQN 517
Query: 712 AIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIY-----QTETIDLS--DDGNKVDRGQK 764
AIVA+L Y+GY+ ED+MI+N+ S+DRG+ + Q I +S ++ K R
Sbjct: 518 AIVAILCYSGYNQEDSMIMNQGSIDRGLFRSLFFRSYMDQERRIGMSVVEEFEKPTRADT 577
Query: 765 LFRRNKDAKSLHSVIDSDGL-----PYVGQMIHPGEPYCSIYDKTTNSWRTNSR------ 813
L ++ + +D DGL G+ I G+ D RT
Sbjct: 578 LRLKH----GTYDKLDDDGLISPGIRVAGEDIIIGKTAPIPPDSQEQGQRTQFHTKRDVS 633
Query: 814 ---KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPD 870
+ +E+ VD V + N + L + +R R T+ P IGDKF+SRHGQKG + +
Sbjct: 634 TPLRSTENGIVDQVLL-TTNQEGL-RFVKVRMRTTKVPQIGDKFASRHGQKGTIGVTYRN 691
Query: 871 IDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
DMPFS G+ PDL+INPHA PSRMT+A L+E + +K
Sbjct: 692 EDMPFSA-EGVVPDLVINPHAIPSRMTVAHLIECLLSK 728
>gi|452845424|gb|EME47357.1| hypothetical protein DOTSEDRAFT_125117 [Dothistroma septosporum
NZE10]
Length = 1147
Score = 204 bits (520), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 124/294 (42%), Positives = 162/294 (55%), Gaps = 21/294 (7%)
Query: 628 THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
TH EI P +L VA L PY HNQSPRN YQC M KQ +G R D LY +
Sbjct: 676 THLEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFTRIDTLLYLMVY 735
Query: 688 PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
PQ P+V+T T D+ P G NA+VAV++Y+GYD+EDA++LNK+S DRG Q+++
Sbjct: 736 PQAPMVKTRTIELVKYDKLPAGQNAVVAVMSYSGYDIEDALVLNKASCDRGFGRCQVFKK 795
Query: 748 ETIDLSDDGN-KVDR-GQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPY----CSIY 801
++ L GN DR G K + + H I +DG+ VG + + Y C +
Sbjct: 796 VSMPLKAYGNGHTDRMGTK-----DNNNTRHRKIGTDGIVEVGVELENSDMYMLKECPVN 850
Query: 802 DKTTNSWRTN-------SRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKF 854
T+ S R S K + + D V V + + K I+ R TR P IGDKF
Sbjct: 851 QATSVSQRDQKWSPMHMSYKLPDPCYADKVMVTANEANSTIIK--IQTRQTRRPEIGDKF 908
Query: 855 SSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
SSRHGQKGV L DMPFS G+ PD+I+NPH FPSRMT+ +LE V+ K
Sbjct: 909 SSRHGQKGVVGLLAEQADMPFSD-QGVVPDIIMNPHGFPSRMTVGKMLELVSGK 961
Score = 84.0 bits (206), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 102/464 (21%), Positives = 191/464 (41%), Gaps = 59/464 (12%)
Query: 36 DHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVS 95
+ CR ++Y+ + D + Y V + G+ P+ML++ RC L G +
Sbjct: 113 NECRLRDMTYSAPIYID--YVYPRQSGNVKKTNVQIGRMPMMLRSSRCVLSGRPESDMGM 170
Query: 96 LKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKD 155
L E A + GGYFI+ G E+V +++ +Q ++ SF K ++ V
Sbjct: 171 LNECAVDPGGYFIVRGQEKV---ILVQEQLSKNRIIVESF---------KGMIQASVTSH 218
Query: 156 QSSVTLKLYYLLNGSVRLGFWLQGKEYL--------LPVGIVLKALVDTNDLEIFNHLTC 207
++V K Y +L +G YL +PV I L+A+ +D EI L
Sbjct: 219 TANVKTKTYVVLK---------KGHLYLKHNSLTEDVPVAIALRAMGVQSDHEIL-LLAA 268
Query: 208 CYDEKYKKEKGAVGSPLVSERVKIILAEVQDLS-LTTRLQCLQH------IGEHFQPVID 260
D +Y+ E L ++ + Q L + TRL+ + GE P
Sbjct: 269 GNDAQYQDE---FAPNLEMAALEGAFTQEQGLDYIATRLKPERFPVYASPTGEVKTPKQK 325
Query: 261 GLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQE 320
++ + + + D F K + FM +++ + + D+ D + N+
Sbjct: 326 AMEKLAATIIPHVPVEDMNF------RPKALYIAFMTRRVLMAMIDPKLVDDRDYVGNKR 379
Query: 321 ILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGT 380
+ L G ++ + ++ +D R+ ++ +++ + +F L I++ +I +
Sbjct: 380 LELAGQMLALLFEDLFKDCTRQIFINMEKQLKKSNPTAEFDPLRLIEQC-----DARITS 434
Query: 381 SIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VR 439
+E + TG + RAG T RL+++ + + + F R S R
Sbjct: 435 GMERAISTGNWTLKRF--RMDRAGVTHVLSRLSYISALGMMTRIT--SQFEKTRKVSGPR 490
Query: 440 KLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIR 483
L P +G LC TP+GE CGL+ ++ + + D G +R
Sbjct: 491 ALQPSQFGMLCTSDTPEGEACGLVKNLALMTHITT-ADEEGPVR 533
>gi|323449030|gb|EGB04921.1| hypothetical protein AURANDRAFT_38738 [Aureococcus anophagefferens]
Length = 1147
Score = 204 bits (520), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 231/906 (25%), Positives = 371/906 (40%), Gaps = 138/906 (15%)
Query: 71 FGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSM 130
G P+ML++R C L ++L L E + GGYF++NG E+V ++ ++ +
Sbjct: 102 LGYVPIMLRSRFCVLADKSDKELCELGECIYDQGGYFVINGSEKV----VVAQERMSNNH 157
Query: 131 VRSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKE------YL- 183
V FR ++ V R + + T +Y + G QG + Y+
Sbjct: 158 V-YCFRKKQPHKYSWVVECRSHVEHGARPTSTIYMQMYNKAGRG-QSQGNQIRMTLPYIR 215
Query: 184 --LPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSL 241
+PV IV +AL D +I H+ + + E+ P + E ++ + L
Sbjct: 216 VDVPVIIVFRALGFVADRDILEHVVYDFSDTEMMEQL---RPSLDEAF-VVQNQTIALDF 271
Query: 242 TTRLQCLQHIG--EHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQK 299
R +IG + Q + LQ E + ++ + K + +++ K
Sbjct: 272 IGRRGSATNIGRSKRVQYAKELLQKE---------VLPHVGTEEQSDTKKAFFVGYIVHK 322
Query: 300 LFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFD 359
L D+ D + + L G L+ + +KL +D + K D
Sbjct: 323 LLMCSLERIDEDDRDHYGKKRLDLAGPLLGGLFRMLF-------RKLTKDVLAYLQKCID 375
Query: 360 F---FNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLR 416
FNLA+ K S+ I + L TG + RAG + RL +
Sbjct: 376 EGRDFNLASAIK------SRVITDGLRYSLATGNWGDRKD---ASRAGVSQVLNRLTYAS 426
Query: 417 FISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYY 476
+S R ++ G + R+L WGF+CP TP+G+ GL+ ++ V+
Sbjct: 427 TLSHLRRLNTPLGREG-KQAKPRQLHNTHWGFICPAETPEGQAVGLVKNLALMSYVS--- 482
Query: 477 DSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGP-----PAVLSVLLDGRVVGVIPS 531
++ IL L S+ L + P P + ++G VGV
Sbjct: 483 --------VGSPQSPILEFLEEW----SMENLEEISPQTIADPGTTKIFVNGSWVGVHRD 530
Query: 532 -SEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISL 590
S +E + LRR I D EV V L ++T + RP+ IS
Sbjct: 531 PSTLESTLRSLRRQ-------IDIDPEVSVV---RDIKEKELRIYTDAGRVCRPLLIISK 580
Query: 591 PSEESQN------------------------IELIGPFEQ-VFMEIRCPDGGDGGRRNAF 625
S + +EL+ E+ M P D +
Sbjct: 581 FSRQELRLRKSHIQKLVNGELGWTQLLVKGLVELVDTEEEETTMIAMVPS--DLNETYSS 638
Query: 626 PATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHL 685
TH EIHP+ +L + ++ P+ DHNQSPRN YQ M KQ MG + R D + L
Sbjct: 639 TYTHCEIHPSMILGICGSIIPFPDHNQSPRNTYQSAMGKQAMGIYASNFQQRMDTLSHVL 698
Query: 686 QTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIY 745
PQ P+ T E P+G NAIVA++ YTGY+ ED++I+N++++DRG+ Y
Sbjct: 699 HYPQKPLATTRAMEHLHFRELPSGVNAIVAIMCYTGYNQEDSLIMNQAAIDRGLFRSTFY 758
Query: 746 QTETIDLSDDGNKVDRGQKLFRRNKDAKSL-----HSVIDSDGLPYVGQMIH-------- 792
+T S G + R +D + + +D DGL G +
Sbjct: 759 RTYVDQESIRGLGEAFHETFERPTRDQCTAMRHGSYDKVDCDGLVAPGLRVSGADILIGK 818
Query: 793 --PGEP--------YCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRF 842
P P +C + +++ + + +ES VD V + N + + + +R
Sbjct: 819 TAPTTPLGMDGNLNHCQFTKQDSST----AMRPNESGLVDQVMLS-TNQEGM-KFTKVRT 872
Query: 843 RHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLL 902
R R P IGDKF+SRHGQKG + DMP++ G+ PD+++NPHA PSRMTI L+
Sbjct: 873 RTIRIPQIGDKFASRHGQKGTIGMTYSQEDMPWTR-DGVSPDIVVNPHAIPSRMTIGHLV 931
Query: 903 ESVAAK 908
E + +K
Sbjct: 932 ECLQSK 937
>gi|212537851|ref|XP_002149081.1| DNA-directed RNA polymerase III, beta subunit, putative [Talaromyces
marneffei ATCC 18224]
gi|210068823|gb|EEA22914.1| DNA-directed RNA polymerase III, beta subunit, putative [Talaromyces
marneffei ATCC 18224]
Length = 1212
Score = 204 bits (519), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 120/300 (40%), Positives = 165/300 (55%), Gaps = 23/300 (7%)
Query: 628 THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
TH EI P +L VA L PY HNQSPRN YQC M KQ +G R D LY +
Sbjct: 729 THLEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIASNQFLRIDSLLYLMVY 788
Query: 688 PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
PQ P+V+T T D+ P G NA VAV++Y+GYD+EDA++LNK SVDRG Q+++
Sbjct: 789 PQKPMVKTRTIELIKYDQLPAGQNATVAVMSYSGYDIEDALVLNKGSVDRGFGRCQVFRK 848
Query: 748 ETIDLSDDGNKVD---RGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCS--IYD 802
+L N + RG +L + H+++D+DGL VG ++ G+ Y + +
Sbjct: 849 YVANLKSYPNGSEDRLRGPELDEEGAPI-TKHALLDTDGLAAVGAVVSQGQVYINKEVPA 907
Query: 803 KTTNSWRTNSRKGS--------------ESVFVDYVAVDMKNSKNLPQKANIRFRHTRNP 848
++ T S G + ++D V V + ++ K ++ R TR P
Sbjct: 908 AAFSAGITGSDVGRPPDYNPAPMTYKLPDPSYIDKVMVSVTEGESKIYK--VQTRQTRRP 965
Query: 849 IIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
+GDKFSSRHGQKGV + DMPF+ G+ PD+I+NPH FPSRMT+ LLE VA K
Sbjct: 966 EVGDKFSSRHGQKGVVGIIAEQADMPFND-QGIVPDIIMNPHGFPSRMTVGKLLELVAGK 1024
Score = 81.6 bits (200), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 103/451 (22%), Positives = 182/451 (40%), Gaps = 53/451 (11%)
Query: 36 DHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVS 95
+ CR ++Y + D F Y V + R G+ P+ML++ +C L ++
Sbjct: 169 NECRLRDMTYAAPIFVD--FTYKRGKDKVTQRRVPIGRMPIMLRSSKCVLSNKKPNEMHL 226
Query: 96 LKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKD 155
L E + GGYFI+NG E+ VIL ++ + + ++E RK
Sbjct: 227 LNECPLDPGGYFIVNGTEK----VILVQEQLSKNRIIVETDPKKEIVQASVTSSSNERKS 282
Query: 156 QSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKK 215
+S + LK RL +P+ IVLKA+ +D E+ L D+ Y+
Sbjct: 283 KSYIILK-------KDRLYLKHNVLSEDVPLVIVLKAMGVHSDKEMM-LLVAGVDDVYQ- 333
Query: 216 EKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQ---PVIDGLQS---ESYYA 269
E I E ++ T+ Q L IG + I G + E
Sbjct: 334 -----------EDFAINFEEAIKQNVFTQQQALDWIGSKIKINRGKIGGYKKTHIEEAIE 382
Query: 270 VAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
+VI ++ V D K + M +++ + + D+ D + N+ + L G L+
Sbjct: 383 AISSVIISHVEVTDMDFRPKAIYVANMARRVLMAKHDSDMVDDRDYVGNKRLELAGQLLA 442
Query: 330 IYLKEKLEDWLRKGKKLIQDEIEN--NGKKFDFFNLANIKKVMEKNPSKQIGTSIET--- 384
+ ED +K + I+ I ++ + F+ ++ + + + + +I T
Sbjct: 443 LL----FEDLFKKFQFDIKMNITKVLGKRRREIFDAMSVVTLHGNHITHGMNRAISTGNW 498
Query: 385 MLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLLP 443
LK R+ +RAG T RL+++ + + + F R S R L P
Sbjct: 499 SLKRFRM---------ERAGVTHVLSRLSYIAALGMMTRI--SSQFEKTRKVSGPRALQP 547
Query: 444 ESWGFLCPVHTPDGEPCGLLNHMTSTCRVAS 474
+G LCP TP+GE CGL+ ++ + +
Sbjct: 548 SQFGMLCPSDTPEGEACGLVKNLALMTHITT 578
>gi|396941920|gb|AFN89677.1| RNA polymerase II, partial [Candida blankii]
Length = 771
Score = 204 bits (519), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 206/729 (28%), Positives = 308/729 (42%), Gaps = 112/729 (15%)
Query: 261 GLQSESYYAVAETVIRDYIFVHLNDN----NDKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
G+ E A +++ + H+ N K L +M+ ++ + D+ D
Sbjct: 32 GINREKRIRYARDILQKELLPHITQEEGYENRKAFFLGYMVHRMLLVALERREPDDRDHF 91
Query: 317 QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
+ + L G L+ + + R + +Q +E N FNL K S
Sbjct: 92 GKKRLDLAGPLLANLFRMLFKKLTRDIYRYLQKCVETNKD----FNLTLAVK------SN 141
Query: 377 QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
I ++ L TG Q + RAG + R F +S R + G +
Sbjct: 142 TITNGLKYSLATGNWGDQKKA-MSTRAGVSQVLNRYTFSSTLSHLRRTNTPIGRDG-KIA 199
Query: 437 SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
R+L WG +CP TP+G+ CGL+ +++ ++ S+ I+ L
Sbjct: 200 RPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGSPSQ-----------PIVYFL 248
Query: 497 IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGV--IPSSEIEKVVAHLRRLKVS-AASVIP 553
GM P L V P V ++G +GV P++ ++ + A R+ +S S+I
Sbjct: 249 EEWGMEP-LEDYVPHASPNATRVFVNGVWIGVHRDPATLVDTMRALRRKGDISPEVSIIR 307
Query: 554 DDLEVGY-VPLSLGGAYPGLYLFT----SPPK------------FVR-----------PV 585
D E + + G Y L+L SP K +R PV
Sbjct: 308 DIREKEFRIFTDAGRVYRPLFLVDNDEDSPYKGELKLRKDHVRELIRMEEEGDMETGEPV 367
Query: 586 RNIS----------LPSEESQNIELIGPFE--------QVFMEIRCPDGGDGGRR----- 622
S + EE + + + E Q EI + D RR
Sbjct: 368 STWSSLVNNGIVEYIDGEEEETVMIAMTPEDLEVSRQMQAGQEILEEEDPDPARRVKQAY 427
Query: 623 --NAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQ 680
NA TH EIHP+ +L + A++ P+ DHNQSPRN YQ M KQ MG + R D
Sbjct: 428 NPNAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYSVRMDT 487
Query: 681 KLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMC 740
L PQ P+ T + E P G NAIVA+L Y+GY+ ED++I+N+SS+DRG+
Sbjct: 488 MSNILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQSSIDRGLF 547
Query: 741 HGQIY-----QTETIDLS--DDGNKVDRGQKLFRRNKDAKSLHSVIDSDGL--PYV---G 788
+ Q I +S ++ K R L ++ + +D DGL P V G
Sbjct: 548 RSLFFRSYMDQERRIGMSVVEEFEKPTRADTLRLKH----GTYDKLDDDGLIPPGVRVSG 603
Query: 789 QMIHPGEPYCSIYDKTTNSWRTNSR---------KGSESVFVDYVAVDMKNSKNLPQKAN 839
+ I G+ D RT + +ES VD V + N + L +
Sbjct: 604 EDIIIGKTAPIPPDTEELGQRTKFHTKRDASTPLRSTESGIVDQVVL-TTNQEGL-RFVK 661
Query: 840 IRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIA 899
+R R T+ P IGDKF+SRHGQKG + DMPF+ G+ PDLIINPHA PSRMT+A
Sbjct: 662 VRMRTTKVPQIGDKFASRHGQKGTIGVTYRHEDMPFTA-EGIVPDLIINPHAIPSRMTVA 720
Query: 900 MLLESVAAK 908
L+E + +K
Sbjct: 721 HLIECLLSK 729
>gi|330946830|ref|XP_003306806.1| hypothetical protein PTT_20049 [Pyrenophora teres f. teres 0-1]
gi|311315505|gb|EFQ85085.1| hypothetical protein PTT_20049 [Pyrenophora teres f. teres 0-1]
Length = 484
Score = 204 bits (519), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 114/261 (43%), Positives = 157/261 (60%), Gaps = 21/261 (8%)
Query: 667 MGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMED 726
MG +L +R D K Y LQT QTPI R Y KYG+D +P G NA+VAV++YTGYDM+D
Sbjct: 1 MGTPATSLDYRTDNKAYRLQTGQTPIARPPLYNKYGLDNFPNGMNAVVAVISYTGYDMDD 60
Query: 727 AMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQ----KLFRRNKDA---KSLHSVI 779
+L++ + +RG HG +Y+T+ DL ++G++ +R + KLF ++ +
Sbjct: 61 GFVLSRGAHERGFGHGTVYKTKICDL-EEGSRKNRSKRTVTKLFGFAPNSLVEAKPKETL 119
Query: 780 DSDGLPYVGQMIHPGEPYCSI----YDKTTNSWRTNS-------RKGSESVFVDYVAVDM 828
D+DGLP VG M+ G+ + YD + + K E F+D V +
Sbjct: 120 DADGLPRVGMMLRSGDVIAAWHTVSYDTAMDDYTNKDGQTQFFKYKEDEVAFIDQVRLIG 179
Query: 829 KNSKNLP-QKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLII 887
P QK +I+ R R+PI+GDKFSSRHGQKGV SQ + DMPFS TG++PD+II
Sbjct: 180 SEDGTQPCQKLSIKLRIPRSPIVGDKFSSRHGQKGVVSQKFSVADMPFS-ETGIQPDVII 238
Query: 888 NPHAFPSRMTIAMLLESVAAK 908
NPHAFPSRMTI M +ES+A K
Sbjct: 239 NPHAFPSRMTIGMFIESLAGK 259
>gi|294660111|ref|XP_002777730.1| DEHA2G23232p [Debaryomyces hansenii CBS767]
gi|199434470|emb|CAR66041.1| DEHA2G23232p [Debaryomyces hansenii CBS767]
Length = 1165
Score = 204 bits (518), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 119/304 (39%), Positives = 161/304 (52%), Gaps = 26/304 (8%)
Query: 628 THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
TH EI P +L VA L PY HNQSPRN YQC M KQ +G R D LY +
Sbjct: 683 THMEIEPFTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGVIGYNQFRRIDTLLYLMVY 742
Query: 688 PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
PQ P+V+T T D+ P G NA+VAV++Y+GYD+EDA++LNKSS+DRG Q+ +
Sbjct: 743 PQQPMVKTKTIELIDYDKLPAGQNAVVAVMSYSGYDIEDALVLNKSSIDRGFGRCQVLRK 802
Query: 748 ETIDLSDDGNKVDRGQKLFRRNKDAKSL--HSVIDSDGLPYVGQMIHPGEPYCS------ 799
TI L N R +++ + + H+ + DGL VG + G+ Y +
Sbjct: 803 NTITLKRYPNHTKDLVSGMRVDENGEPIFPHAALGPDGLGEVGMKVENGQVYVNKCVPNN 862
Query: 800 -------IYDKTTNSWRTNSR--------KGSESVFVDYVAVDMKNSKNLPQKANIRFRH 844
D+ N +T K E +VD V M S N + R
Sbjct: 863 AGESVLGSNDQQHNQQQTAESHREVPAFYKAPEPAYVDQVM--MSVSDNDQALIKVLLRQ 920
Query: 845 TRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLES 904
TR P +GDKFSSRHGQKGVC + D+PF+ G+ PD+I+NPH FPSRMT+ ++E
Sbjct: 921 TRRPELGDKFSSRHGQKGVCGIIVQQEDLPFND-DGISPDIIMNPHGFPSRMTVGKMIEL 979
Query: 905 VAAK 908
++ K
Sbjct: 980 ISGK 983
Score = 103 bits (258), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 114/525 (21%), Positives = 213/525 (40%), Gaps = 107/525 (20%)
Query: 9 FEPLRELVRHHIESFDYMLDEGLSEMFD-------------------------------- 36
F ++ LV+ H++SF+Y +D L ++
Sbjct: 51 FLKVKGLVKQHLDSFNYFVDVDLKKIIKANELVLSDVDPEFYLKYLDIRIGHKSTSPPGT 110
Query: 37 --------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGA 88
CR ++Y+ + DVE Y ++ + G+ P+ML++ +C L G
Sbjct: 111 KEVILPPHECRLRDLTYSAPIYVDVE--YTRGRKIIMHKDLEIGRMPIMLRSNKCILDGI 168
Query: 89 DSQKLVSLKEEAAEMGGYFILNGLERVF-------RSVILPKQNYPMSMVRSSFRDRREG 141
D Q++ E + GGYFI+NG E+V ++ I+ + + ++V++S
Sbjct: 169 DEQQMARFDECPLDPGGYFIVNGTEKVILVQEQLSKNRIIVEADEKKNIVQASVTSSTHE 228
Query: 142 YTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEI 201
K VI + D YL + S+ +P+ I+LKA T+DLEI
Sbjct: 229 RKSKTYVI--TKNDN-------IYLKHNSISED---------IPIVIILKAAGITSDLEI 270
Query: 202 FNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQ----- 256
L C D +Y+ + + E L + T+ Q L ++G+ +
Sbjct: 271 L-QLVCGQDPQYQ------------DLFVVNFEEAAKLEIFTQQQALNYVGKRVKTIRRA 317
Query: 257 --PVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKFN----LLIFMLQKLFSLVDHTSVS 310
P + +Q E A+A T+I HL ++ +F + M +++ + + +
Sbjct: 318 GAPKLSQMQ-EGIEAIATTII-----AHLTVSDLQFREKALYIAAMARRVLMTMHNPKMV 371
Query: 311 DNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVM 370
D+ D + N+ + L G L+++ ++ + + K I ++ + +F L +I
Sbjct: 372 DDRDYVGNKRLELAGQLMSLLFEDLFKKFNSDFKANIDKILKKPSRASEFDALLSINI-- 429
Query: 371 EKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASF 430
S I + + TG + + +RAG T RL+++ + + + F
Sbjct: 430 ---HSNNITMGLNRAISTGNWSLKRF--KMERAGVTHVLSRLSYISALGMMTRI--SSQF 482
Query: 431 AGLRTTS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVAS 474
R S R L P +G LC TP+GE CGL+ ++ + S
Sbjct: 483 EKSRKVSGPRALQPSQFGMLCTADTPEGEACGLVKNLALMTHITS 527
>gi|322511118|gb|ADX06431.1| putative DNA-directed RNA polymerase II [Organic Lake phycodnavirus
2]
Length = 1208
Score = 203 bits (517), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 225/940 (23%), Positives = 401/940 (42%), Gaps = 136/940 (14%)
Query: 36 DHCRQAKISYTGKLM--ADVEFQYLDAGSPVVR----ERFN-FGQFPVMLKTRRCHLQGA 88
+ CR I+Y + DVE+ +L S + + E F G FP+MLK++ C L
Sbjct: 49 NECRLKNITYATTIYYKVDVEYVFLTRKSTIRKTYPEENFYCLGSFPIMLKSKLCLLNKL 108
Query: 89 DSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVV 148
+ L E + GGYFI++G E+V I+P++ + +++ R + D ++
Sbjct: 109 NKDVCYQLGECRHDYGGYFIIDGKEKV----IIPQEKFGDNII--YIRTLNDDKHDFSIE 162
Query: 149 IRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---LPVGIVLKALVDTNDLEIFNHL 205
I+ V +D S + + + G L + +P+ IV++AL +D +I +
Sbjct: 163 IKSVSEDHSKPKRTM--AIRRDIHRGHLLVDIPNVRLPIPLFIVIRALGIISDKDICKCI 220
Query: 206 TCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDL-SLTTRLQCLQHIGEHFQPVIDGLQS 264
D+ K ++++ + D + T+L CL +I +
Sbjct: 221 LSDLDDNEK-------------YLELLRPSINDAGTFYTQLACLNYISVFLK-------- 259
Query: 265 ESYYAVAET--VIRDYIFVHLNDNN--DKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQE 320
+ V ET ++ +Y+ H+ + N K L +M +L + + D+ + +
Sbjct: 260 --HSTVNETHNILTNYLLPHMGEMNYHAKALFLGYMTFELLKTIHGDRPLTDRDNYKFKR 317
Query: 321 ILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNL---------ANIKKVME 371
+ G ++ E + ++ +++ E+ N + NL +NI +++
Sbjct: 318 VESTGTIMKALFTEYAKIMKQEIHTIVEKEMYYNNSLYLDENLHEQDFNPEKSNILYLVK 377
Query: 372 KNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFA 431
+ + IE K +R G RL++ F++ R ++ +
Sbjct: 378 DHIFNE--KYIEQGFKKAFKGDWGAYGHTKRLGVIQDLNRLSYNSFLTHLRKINLEVD-S 434
Query: 432 GLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTS 491
+ L +G+L PV TPDG GL HM C + + I DF K
Sbjct: 435 SSKMVGPHLLHGSQYGYLDPVDTPDGANVGLHKHMAIMCNITRAIPNEI-IYDFIKNNFD 493
Query: 492 ILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEI---EKVVAHLRRLKVSA 548
IL SL + + ++G VG++ I ++ + RR
Sbjct: 494 IL----------SLERSSFLQIHNHFRLFINGLWVGIVIQDPIHFKQQFIDFRRR----- 538
Query: 549 ASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRP------------------------ 584
+IP+ + + + + Y +++++ + +RP
Sbjct: 539 -GIIPNTISIC---IQMNDKY--IFIYSDEGRLIRPLIYYEDNQVVIYDKEPIKWSNLVK 592
Query: 585 ----VRNISLPSEESQNIELI--GPFEQVFMEIRCPDGGDGGRRNAFPATHEEIHPTGML 638
V I S+E +E + E ++ + + G TH EIHP+ M
Sbjct: 593 TKNKVYEIDDQSKERVYLEYMDSSEIEMCYVSMEYKETYKG-------YTHLEIHPSLMF 645
Query: 639 SVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTY 698
++ N + ++NQ PRN++ C AKQ + R D+ L Q PIVRT +
Sbjct: 646 GIMGNQIIFPENNQLPRNLFGCGQAKQAVSLYHSNFINRIDKMGIVLNYGQKPIVRTQYF 705
Query: 699 TKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT-ETID----LS 753
+++P G N IVA++ +T Y++EDA+++N+SSV RG+ Y ET+D
Sbjct: 706 NYIHEEQHPYGENVIVAIMCHTSYNVEDAILINESSVKRGLFKTTYYNMYETMDEITIAG 765
Query: 754 DDGNKVDR--GQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTN 811
+ ++DR +L R K + ++ +D +GL + ++ + N +
Sbjct: 766 KNEKRIDRVLNHELTRDTKPGYN-YNKLDENGLIFENTIMDDKTVVIGKVNIINNEVFDS 824
Query: 812 S---RKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLW 868
S +KG +VD + K+ + L A +R R R+P IGDKF SR GQKG L
Sbjct: 825 SVLPKKGQLG-YVDKTFIYNKDGRKL---AKVRIREDRSPAIGDKFCSRCGQKGTIGNLI 880
Query: 869 PDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
P+ +MPF+ G++PD+IINPHA PSRMTI L+E++ AK
Sbjct: 881 PEENMPFTK-NGLKPDIIINPHALPSRMTIGQLIETLLAK 919
>gi|414585187|tpg|DAA35758.1| TPA: putative DNA-directed RNA polymerase subunit family protein [Zea
mays]
Length = 1063
Score = 203 bits (517), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 235/955 (24%), Positives = 404/955 (42%), Gaps = 180/955 (18%)
Query: 37 HCRQAKISYTGKLMADVEFQYLD--------AGSPVVRERFNF---------GQFPVMLK 79
H R ++Y +L+ +V Q G+ ++ NF G PVM+K
Sbjct: 178 HARLQNMTYASRLIVEVTIQVYSLEKSDKSKTGNDGFVQKRNFMNETHWIFIGLLPVMVK 237
Query: 80 TRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVF---------RSVILPKQNYPMSM 130
+ C L + + + + GGYF++ G+E+VF R I + + +S
Sbjct: 238 SNLCLLHSLNESECL------FDAGGYFLVKGMEKVFIAQEQRCLRRLWISDRPCWTISF 291
Query: 131 VRSSFRDRREGYTDKAVVIRCVRKDQSS-------VTLKLYYLLNGSVRLGFWLQGKEYL 183
+ S + RR + I+ V +S +T+ Y
Sbjct: 292 M-SEIKRRR-------IYIKLVESTRSEDFSESKIITISFLYAT---------------- 327
Query: 184 LPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTT 243
+PV ++ AL ++D E+F+ + ++ A +S +K +D +
Sbjct: 328 MPVWLLFFALGISSDKEVFDMIDM-------QDCDASVINTISATIKESDKLCEDFRKSD 380
Query: 244 RLQCLQHIGEHFQPVIDGLQSESYYAVAETV---IRDYIFVHLNDNNDKFNLLIFMLQKL 300
+ + +D L S + AE+ I ++F ++ N +K L +M++ L
Sbjct: 381 KAR----------QYVDELVKSSRFPPAESFDDYIARFLFPDISGNRNKALFLGYMVKCL 430
Query: 301 FSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDF 360
DN D +N+ + LPG L+ L+ +L ++ K IQ ++ ++ + D
Sbjct: 431 LMAFTGKRKCDNKDDFRNKRLDLPGELLGRELRAQLRLAEKRMVKAIQRDLNSDRELQDL 490
Query: 361 FNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRA----GYTVQAERLNFLR 416
+ I SI T +T + +RA G R N L+
Sbjct: 491 --------------ERYIDASIVTNGLNRAFSTGSWCHPYKRAERCSGIVATLRRTNPLQ 536
Query: 417 FISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYY 476
+S R + ++AG + R P WG LC + TPDGE CGL+ ++ T V+S
Sbjct: 537 MMSDLRKTRQRVAYAG-KAGDARYPNPSYWGKLCFMSTPDGENCGLVKNLAVTAIVSS-- 593
Query: 477 DSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEK 536
++ ++ I GM L + + + L+G VG +S
Sbjct: 594 ----------RVMQPLIESFISCGM-SKLNDIPTEHIQRMDKIFLNGNWVGSCENSA--S 640
Query: 537 VVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPV----------- 585
V LR ++ S S+I +E+ + + +FT + +RP+
Sbjct: 641 FVFRLRCMRRS--SLIDPQVEI-----KRDKHHNEVRVFTDAGRILRPLLVVENLNKIRK 693
Query: 586 ---RNISLPSEESQNI-ELIGPFEQVFMEIRCPDGGDGGRRNAFPA-------THEEIHP 634
R+ S Q I E IG E+ +I+C G R+ F + TH E+ P
Sbjct: 694 PKGRSFSFHELMQQEIIEFIGVEEE--EDIQCA----WGIRHLFESEGAISSYTHCELDP 747
Query: 635 TGMLSVVANLTPYSDHNQSPRNMYQCQM-AKQTMGFSVQALKFRADQKLYHLQTPQTPIV 693
+ +L + + P+++HN + R +YQ + ++Q +G+S R D + L PQ P+
Sbjct: 748 SFLLGLSCGIIPFANHNFARRVLYQSEKHSQQAIGYSTTNPHIRVDTLSHQLYYPQRPLF 807
Query: 694 RT--------NTYTKYGID------EYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGM 739
+T + Y +G EY G NAIVAV + G++ ED++++N++S++RGM
Sbjct: 808 KTVIADCLGRSDYASFGRKNDFARPEYFNGQNAIVAVNVHQGFNQEDSLVMNRASLERGM 867
Query: 740 CHGQIYQTETIDLSD-DGNK-VDRGQKL-FRRNKDAKSLHSVIDSDGLPYVGQMIHPGEP 796
+ ++ D+ + DG K + +K+ F + + + +D DGLPYVG + +
Sbjct: 868 FRTEHLRSYKADVENKDGTKRLKLKEKIDFGKTESKRGRVDNLDDDGLPYVGASLQTNDI 927
Query: 797 YCSIYDKTTNSWRTNS--RKGSESVFVDYVAVDMKNS-KNLPQKANIRFRHTRNPIIGDK 853
+ K + S +S K +E V V + + KN A + R R P +GDK
Sbjct: 928 ---VIGKVSESGEDHSIKLKHTEKGMVQKVLLSANDEGKNF---AVVTLRQVRTPCLGDK 981
Query: 854 FSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
FSS HGQKGV L + PF+ G+ PD++INPHAFP+R T LLE+ K
Sbjct: 982 FSSMHGQKGVVGFLESQENFPFTH-EGIVPDIVINPHAFPTRQTPGQLLEAALGK 1035
>gi|67515344|gb|AAY68201.1| RNA polymerase IV second largest subunit [Lunularia cruciata]
Length = 789
Score = 203 bits (517), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 158/566 (27%), Positives = 253/566 (44%), Gaps = 82/566 (14%)
Query: 396 GLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTP 455
G DL + +G +R N + + R + + R WG +CP+ TP
Sbjct: 49 GHDLMKNSGIVFDLKRSNPISTLCQLRELRQYVPPTVKVGEDARHPTFSQWGRVCPIDTP 108
Query: 456 DGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPA 515
DGE CGL+ +M T V+S + ++ L GMIP L +
Sbjct: 109 DGEACGLVKNMALTGIVSS-----------AGTEAPVIDFLESNGMIP-LESVTSDTLGM 156
Query: 516 VLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLF 575
V+ V ++GR +GV+ + E ++ LR L+ + +EV + + +
Sbjct: 157 VMKVFVNGRWLGVVKHTHFEPIIKGLRALRKRPPTAELYQMEVVIIRPKFE-----IQVS 211
Query: 576 TSPPKFVRPVRNI--------------------SLPSE------ESQNIELIGPFEQVFM 609
T + +RP+ + LP E + IEL+G E+
Sbjct: 212 TDSGRVLRPLLVVRHNKMNLNQDSVTQYISEKRGLPHERFTWFLQKHVIELLG-VEEEEK 270
Query: 610 EIRCPDGGDGGRRNAFPA------THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQC-QM 662
+ G D + N + +H EIHP+ +L + A++ P+ NQS RN++Q +
Sbjct: 271 ALIALHGADLEKANGLQSRKTVEFSHAEIHPSLILGLSASVIPFPHRNQSSRNLFQAHKH 330
Query: 663 AKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGY 722
+KQ +G V L RAD HL PQ +V+TN DE +G NAIVA+ YTGY
Sbjct: 331 SKQAIGVYVTNLACRADTSGQHLFYPQVQLVKTNIVNCLQKDEIFSGQNAIVAIACYTGY 390
Query: 723 DMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDR--------GQKLFRRNKDAKS 774
+ ED++I+++S++DRGM Q Y+T + D + G + R ++
Sbjct: 391 NQEDSIIMDQSALDRGMFRTQHYRTFKSEERSDHETFGKPSAADDSGGPRAMRSDQ---- 446
Query: 775 LHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNL 834
+++ DGLPY+G + + I K + N++ + VD + K
Sbjct: 447 ---ILEDDGLPYIGCNLGMND---VIVGKIVTHSQKNTQSADSARLVDTSTRLKAHEKGR 500
Query: 835 PQK------------ANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMR 882
++ A ++ R TR P +GDKFS HGQKG+ ++ D+PF+ G+
Sbjct: 501 VEQVILVQDEEGKKIAKVKLRETRIPQVGDKFSRMHGQKGIVGMVFTQEDLPFTN-EGIV 559
Query: 883 PDLIINPHAFPSRMTIAMLLESVAAK 908
PD+IINPHAFPSR T+ + ES K
Sbjct: 560 PDIIINPHAFPSRQTLGQMCESALGK 585
>gi|45545331|gb|AAS67513.1| DNA-dependent RNA polymerase II second largest subunit, partial
[Hydnum repandum]
Length = 887
Score = 203 bits (516), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 209/808 (25%), Positives = 333/808 (41%), Gaps = 144/808 (17%)
Query: 184 LPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTT 243
+P+ +V +AL T+D +I H+ CYD + + P + E I EV
Sbjct: 77 IPIWVVFRALGITSDRDILEHI--CYDTN-DTQMVEMLKPCIDEGFVIQEREV------- 126
Query: 244 RLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLN----DNNDKFNLLIFMLQK 299
L IG+ + GL + A+ +++ + H++ + K +M+ +
Sbjct: 127 ---ALDLIGK--RGTTTGLSKDKRLRYAQEILQKEMLPHVSMGEGSESKKAFFFGYMIHR 181
Query: 300 LFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFD 359
L D+ D + + L G L+ + + + +Q +E +
Sbjct: 182 LLLAALERRELDDRDHFGKKRLDLAGPLLASLFRMLFRKLTKDVYRHLQKCVETHKD--- 238
Query: 360 FFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFIS 419
FN++ K S I ++ L TG Q + +AG + R F +S
Sbjct: 239 -FNISIAVK------SNTITNGLKYSLATGNWGDQKK-SMSSKAGVSQVLNRYTFASTLS 290
Query: 420 FFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSR 479
R + G + R+L WG +CP TP+G+ CGL+ +++ ++
Sbjct: 291 HLRRCNTPLGRDG-KIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMACIS------ 343
Query: 480 GNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVA 539
+ ++ L G+ SL + + A V ++G +GV + +V
Sbjct: 344 -----VGSLSAPVIEFLQEWGL-ESLEENANAHGSAT-KVFVNGVWMGV--HRDAPNLVK 394
Query: 540 HLRRLK-----VSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPV--------- 585
LRRL+ S S++ D E L L+T + RP+
Sbjct: 395 TLRRLRRKDDISSEVSIVRDIRE------------KELRLYTDAGRVCRPLFIVENQQLL 442
Query: 586 ---RNISLPSEESQN-------------IELI-GPFEQVFMEIRCPDGGDGGRRN----- 623
++++ +++S+ IEL+ E+ M PD + R N
Sbjct: 443 LKKEHVNMLNDKSRTDPYKWTHLVKDGVIELLDAEEEETVMICMTPDDLENSRTNQAVAA 502
Query: 624 ----------------------AFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQ 661
A TH EIHP+ +L + A++ P+ DHNQSPRN YQ
Sbjct: 503 GYVSNAGASDHDVAARVRSTMTAHTWTHCEIHPSMILGICASIIPFPDHNQSPRNTYQSA 562
Query: 662 MAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTG 721
M KQ MG + + R D L PQ P+ T + E P G NA VA+L Y+G
Sbjct: 563 MGKQAMGIYLTNYQVRMDTMANILYYPQKPLATTRSMEYLRFRELPAGQNATVAILCYSG 622
Query: 722 YDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDG-------NKVDRGQKLFRRNKDAKS 774
Y+ ED++I+N+SS+DRG+ Y++ T G K R L ++ +
Sbjct: 623 YNQEDSVIMNQSSIDRGLFRSMYYRSYTDAEKKVGVLPLEEFEKPTRDTTLRMKHGTYEK 682
Query: 775 LHSVIDSDGLPYVGQ-------MIHPGEPYCSIYDKTTNSWRTNSR-------KGSESVF 820
L + DGL G +I P ++ RT++R K +E+
Sbjct: 683 L----EDDGLIAPGTGVAGEDIIIGKTAPLPPDSEELGQRMRTHTRRDVSTPLKSTENGI 738
Query: 821 VDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTG 880
VD V V N L + IR R TR P +GDKF+SRHGQKG + DMPF+ G
Sbjct: 739 VDQVLV-TTNQDGL-KFVKIRIRSTRIPQVGDKFASRHGQKGTVGITYRHEDMPFTA-EG 795
Query: 881 MRPDLIINPHAFPSRMTIAMLLESVAAK 908
+ PD+IINPHA PSRMTI L+E + +K
Sbjct: 796 ITPDIIINPHAIPSRMTIGHLIECLLSK 823
>gi|440631707|gb|ELR01626.1| DNA-directed RNA polymerase III subunit C2 [Geomyces destructans
20631-21]
Length = 1187
Score = 203 bits (516), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 117/303 (38%), Positives = 171/303 (56%), Gaps = 25/303 (8%)
Query: 628 THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
TH EI P +L VA L PY HNQSPRN YQC M KQ +G R D LY +
Sbjct: 735 THLEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFARIDTLLYLMVY 794
Query: 688 PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
PQ P+V+T T D+ P G NAIVAV++Y+GYD+EDA++LN++S+DRG Q+ +
Sbjct: 795 PQAPMVKTRTIELIRYDKLPAGQNAIVAVMSYSGYDIEDALVLNRASLDRGFGRCQVLRK 854
Query: 748 ETIDLSDDGNK-VDR-GQKLFR-RNKDAKSL----HSVIDSDGLPYVGQMIHPGEPYC-- 798
L N+ DR G + F R D ++ H ++ +DGL +VG++ G+ Y
Sbjct: 855 YATKLLKYANRSADRIGDRDFEVRASDGATVPIEKHQLLGADGLAHVGEIARNGDVYVKK 914
Query: 799 ------SIYDKTTNSWRTNSRKGS-------ESVFVDYVAVDMKNSKNLPQKANIRFRHT 845
S ++S R++ K + + ++D + + ++N ++ R T
Sbjct: 915 ETPLNTSSTGIGSDSGRSSDMKDASMSYRLPDPAYIDKIMI--SQTENESTVIKVQTRQT 972
Query: 846 RNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESV 905
R P +GDKFSSRHGQKGV + P D+PF+ +G+ PD+I+NPH FPSRMT+ +LE +
Sbjct: 973 RRPELGDKFSSRHGQKGVVGLIAPAQDLPFAD-SGITPDIIMNPHGFPSRMTVGKMLELL 1031
Query: 906 AAK 908
+ K
Sbjct: 1032 SGK 1034
Score = 97.4 bits (241), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 117/522 (22%), Positives = 205/522 (39%), Gaps = 91/522 (17%)
Query: 9 FEPLRELVRHHIESFDYMLDE-----------------------------GLSEMFDH-- 37
F ++ LV+ HI+SF+Y +D G E D+
Sbjct: 104 FLKVKGLVKQHIDSFNYFVDHEIKDILKANKFVRSDVDNTFWLEYTDIRVGAPERLDYDD 163
Query: 38 -----------CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQ 86
CR ++Y + D+ +Y+ V R G+ P+MLK+ +C L
Sbjct: 164 RKPLNDVTPNECRLRDLTYAAPIFVDI--KYVRGKRIVARRGIPIGRMPIMLKSSKCRLT 221
Query: 87 GADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKA 146
+ +L + E A + GGYFI+NG E+ VIL ++ + V ++ +
Sbjct: 222 SRNDGQLAYMNECALDPGGYFIVNGTEK----VILVQEQLSKNRVIVETDAKKSMVSASV 277
Query: 147 VVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGK--EYLLPVGIVLKALVDTNDLEIFNH 204
RK +S V +K + +LQ +P+ I LKA+ +D E+
Sbjct: 278 TSSTHERKSKSYVVMK---------KERIYLQHNVLTEAVPIVIALKAMAVQSDHEML-L 327
Query: 205 LTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHF--------Q 256
L D Y+ + + E L + ++ Q L+ IG Q
Sbjct: 328 LVAGTDATYQDD------------FAVNFEEAAKLGIFSQQQALEWIGGRVKMGKSRFGQ 375
Query: 257 PVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
P + A+A VI V L D K + FM++++ + + D+ D +
Sbjct: 376 PQRRNFAQDGLEALANIVITHVPVVGL-DFRPKALYVCFMVRRVLMAMHDPKLVDDRDYV 434
Query: 317 QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
N+ + L G L+++ ED +K ++ I+ KK + N + + M+ +
Sbjct: 435 GNKRLELAGQLLSLL----FEDLFKKFNSDLKMNIDKVLKKPNRTNEFDAYQHMQSH-GN 489
Query: 377 QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
I + + TG + + +RAG T RL+++ + + + F R
Sbjct: 490 YITQGMNRAISTGNWSLKRF--KMERAGVTHVLSRLSYIAALGMMTRI--SSQFEKTRKV 545
Query: 437 S-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYD 477
S R L P +G LCP TP+GE CGL+ ++ + + D
Sbjct: 546 SGPRALQPSQFGMLCPSDTPEGEACGLVKNLALMTHITTNDD 587
>gi|283443702|gb|ADB19860.1| mutant required to maintain repression 7-3/RNA polymerase D second
largest subunit 2-3 [Zea mays]
Length = 1094
Score = 203 bits (516), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 235/955 (24%), Positives = 404/955 (42%), Gaps = 180/955 (18%)
Query: 37 HCRQAKISYTGKLMADVEFQYLD--------AGSPVVRERFNF---------GQFPVMLK 79
H R ++Y +L+ +V Q G+ ++ NF G PVM+K
Sbjct: 178 HARLQNMTYASRLIVEVTIQVYSLEKSDKSKTGNDGFVQKRNFMNETHWIFIGLLPVMVK 237
Query: 80 TRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVF---------RSVILPKQNYPMSM 130
+ C L + + + + GGYF++ G+E+VF R I + + +S
Sbjct: 238 SNLCLLHSLNESECL------FDAGGYFLVKGMEKVFIAQEQRCLRRLWISDRPCWTISF 291
Query: 131 VRSSFRDRREGYTDKAVVIRCVRKDQSS-------VTLKLYYLLNGSVRLGFWLQGKEYL 183
+ S + RR + I+ V +S +T+ Y
Sbjct: 292 M-SEIKRRR-------IYIKLVESTRSEDFSESKIITISFLYAT---------------- 327
Query: 184 LPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTT 243
+PV ++ AL ++D E+F+ + ++ A +S +K +D +
Sbjct: 328 MPVWLLFFALGISSDKEVFDMIDM-------QDCDASVINTISATIKESDKLCEDFRKSD 380
Query: 244 RLQCLQHIGEHFQPVIDGLQSESYYAVAETV---IRDYIFVHLNDNNDKFNLLIFMLQKL 300
+ + +D L S + AE+ I ++F ++ N +K L +M++ L
Sbjct: 381 KAR----------QYVDELVKSSRFPPAESFDDYIARFLFPDISGNRNKALFLGYMVKCL 430
Query: 301 FSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDF 360
DN D +N+ + LPG L+ L+ +L ++ K IQ ++ ++ + D
Sbjct: 431 LMAFTGKRKCDNKDDFRNKRLDLPGELLGRELRAQLRLAEKRMVKAIQRDLNSDRELQDL 490
Query: 361 FNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRA----GYTVQAERLNFLR 416
+ I SI T +T + +RA G R N L+
Sbjct: 491 --------------ERYIDASIVTNGLNRAFSTGSWCHPYKRAERCSGIVATLRRTNPLQ 536
Query: 417 FISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYY 476
+S R + ++AG + R P WG LC + TPDGE CGL+ ++ T V+S
Sbjct: 537 MMSDLRKTRQRVAYAG-KAGDARYPNPSYWGKLCFMSTPDGENCGLVKNLAVTAIVSS-- 593
Query: 477 DSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEK 536
++ ++ I GM L + + + L+G VG +S
Sbjct: 594 ----------RVMQPLIESFISCGM-SKLNDIPTEHIQRMDKIFLNGNWVGSCENSA--S 640
Query: 537 VVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPV----------- 585
V LR ++ S S+I +E+ + + +FT + +RP+
Sbjct: 641 FVFRLRCMRRS--SLIDPQVEI-----KRDKHHNEVRVFTDAGRILRPLLVVENLNKIRK 693
Query: 586 ---RNISLPSEESQNI-ELIGPFEQVFMEIRCPDGGDGGRRNAFPA-------THEEIHP 634
R+ S Q I E IG E+ +I+C G R+ F + TH E+ P
Sbjct: 694 PKGRSFSFHELMQQEIIEFIGVEEE--EDIQCA----WGIRHLFESEGAISSYTHCELDP 747
Query: 635 TGMLSVVANLTPYSDHNQSPRNMYQCQM-AKQTMGFSVQALKFRADQKLYHLQTPQTPIV 693
+ +L + + P+++HN + R +YQ + ++Q +G+S R D + L PQ P+
Sbjct: 748 SFLLGLSCGIIPFANHNFARRVLYQSEKHSQQAIGYSTTNPHIRVDTLSHQLYYPQRPLF 807
Query: 694 RT--------NTYTKYGID------EYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGM 739
+T + Y +G EY G NAIVAV + G++ ED++++N++S++RGM
Sbjct: 808 KTVIADCLGRSDYASFGRKNDFARPEYFNGQNAIVAVNVHQGFNQEDSLVMNRASLERGM 867
Query: 740 CHGQIYQTETIDLSD-DGNK-VDRGQKL-FRRNKDAKSLHSVIDSDGLPYVGQMIHPGEP 796
+ ++ D+ + DG K + +K+ F + + + +D DGLPYVG + +
Sbjct: 868 FRTEHLRSYKADVENKDGTKRLKLKEKIDFGKTESKRGRVDNLDDDGLPYVGASLQTNDI 927
Query: 797 YCSIYDKTTNSWRTNS--RKGSESVFVDYVAVDMKN-SKNLPQKANIRFRHTRNPIIGDK 853
+ K + S +S K +E V V + + KN A + R R P +GDK
Sbjct: 928 ---VIGKVSESGEDHSIKLKHTEKGMVQKVLLSANDEGKNF---AVVTLRQVRTPCLGDK 981
Query: 854 FSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
FSS HGQKGV L + PF+ G+ PD++INPHAFP+R T LLE+ K
Sbjct: 982 FSSMHGQKGVVGFLESQENFPFTH-EGIVPDIVINPHAFPTRQTPGQLLEAALGK 1035
>gi|241958746|ref|XP_002422092.1| DNA-directed RNA polymerase III subunit, putative [Candida
dubliniensis CD36]
gi|223645437|emb|CAX40093.1| DNA-directed RNA polymerase III subunit, putative [Candida
dubliniensis CD36]
Length = 1157
Score = 203 bits (516), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 118/300 (39%), Positives = 160/300 (53%), Gaps = 22/300 (7%)
Query: 628 THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
TH EI P +L VA L PY HNQSPRN YQC M KQ +G R D LY +
Sbjct: 679 THLEIEPFTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFRRIDTLLYFMVY 738
Query: 688 PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
PQ P+V+T T D+ P G NA VAV++Y+GYD+EDA++LNK+S+DRG Q+ +
Sbjct: 739 PQQPMVKTKTIELIEYDKLPAGQNATVAVMSYSGYDIEDALVLNKASLDRGFGRCQVVRK 798
Query: 748 ETIDLSDDGNKVDRGQKLFRRNKDAKSL--HSVIDSDGLPYVGQMIHPGEPYCSIY---- 801
T+ L N R +++ K + H + DGL VG I G+ + +
Sbjct: 799 NTVQLKKYPNHTQDILAGMRVDENNKPIFPHQALGPDGLGEVGSRIFNGQVFANKCVPTN 858
Query: 802 -----------DKTTNSWRTNSR--KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNP 848
+T S R KG E ++D V M S N + R TR P
Sbjct: 859 SGDSTLGAQQEQRTAESHREAPAFYKGPEPSYIDQVM--MSVSDNDQALIKVLLRQTRRP 916
Query: 849 IIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
+GDKFSSRHGQKGVC + D+PF+ +G+ PD+I+NPH FPSRMT+ ++E ++ K
Sbjct: 917 ELGDKFSSRHGQKGVCGIIVQQEDLPFND-SGISPDIIMNPHGFPSRMTVGKMIELISGK 975
Score = 98.2 bits (243), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 104/453 (22%), Positives = 197/453 (43%), Gaps = 61/453 (13%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRER-FNFGQFPVMLKTRRCHLQGADSQKLVSL 96
CR ++Y+ + DVE+ G ++R G+ PVML++ +C L+G + +
Sbjct: 117 CRLRDLTYSAPIYVDVEYT---RGRKIIRHNDLEIGRMPVMLRSNKCMLEGMSEATMAQV 173
Query: 97 KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRC-VRKD 155
+E + GGYF++NG E+V +++ +Q ++ + D ++G +V RK
Sbjct: 174 EECPLDPGGYFVVNGTEKV---ILVQEQLSKNRIIVEA--DEKKGIVQASVTSSTHERKS 228
Query: 156 QSSVTLK--LYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKY 213
++ V K YL + S+ +P+ I+LKA +DLEI L C D Y
Sbjct: 229 KTYVITKNDKIYLKHNSISED---------IPIVIILKAAGIVSDLEIL-QLVCGSDPNY 278
Query: 214 KKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQ-------PVIDGLQSES 266
+ + + E L + T+ Q L ++G+ + P + LQ E
Sbjct: 279 Q------------DLFVVNFEEAARLEVFTQQQALYYVGKRVKTIRRAGAPKLSQLQ-EG 325
Query: 267 YYAVAETVIRDYIFVHLNDNNDKFN----LLIFMLQKLFSLVDHTSVSDNPDSLQNQEIL 322
A+A T+I HL ++ +F + M +++ + + + D+ D + N+ +
Sbjct: 326 IEAIATTII-----AHLTVSDLQFKEKALYIATMARRVVMAMHNPKMVDDRDYVGNKRLE 380
Query: 323 LPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSI 382
L G L+++ ++ + + K I ++ + +F L +I S I +
Sbjct: 381 LAGQLMSLLFEDLFKKFNSDFKANIDKVLKKPSRTSEFDALLSINI-----HSNNITMGL 435
Query: 383 ETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKL 441
+ TG + + +RAG T RL+++ + + + F R S R L
Sbjct: 436 NRAISTGNWSLKRF--KMERAGVTHVLSRLSYISALGMMTRI--SSQFEKSRKVSGPRAL 491
Query: 442 LPESWGFLCPVHTPDGEPCGLLNHMTSTCRVAS 474
P +G LC TP+GE CGL+ ++ + +
Sbjct: 492 QPSQFGMLCTADTPEGEACGLVKNLALMTHITT 524
>gi|298566250|ref|NP_001177299.1| required to maintain repression7 [Zea mays]
gi|283443696|gb|ADB19857.1| required to maintain repression 7/RNA polymerase D second largest
subunit [Zea mays]
gi|297185477|gb|ADI24118.1| RPD2/E2a [Zea mays]
gi|414585188|tpg|DAA35759.1| TPA: putative DNA-directed RNA polymerase subunit family protein [Zea
mays]
Length = 1229
Score = 203 bits (516), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 235/955 (24%), Positives = 404/955 (42%), Gaps = 180/955 (18%)
Query: 37 HCRQAKISYTGKLMADVEFQYLD--------AGSPVVRERFNF---------GQFPVMLK 79
H R ++Y +L+ +V Q G+ ++ NF G PVM+K
Sbjct: 178 HARLQNMTYASRLIVEVTIQVYSLEKSDKSKTGNDGFVQKRNFMNETHWIFIGLLPVMVK 237
Query: 80 TRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVF---------RSVILPKQNYPMSM 130
+ C L + + + + GGYF++ G+E+VF R I + + +S
Sbjct: 238 SNLCLLHSLNESECL------FDAGGYFLVKGMEKVFIAQEQRCLRRLWISDRPCWTISF 291
Query: 131 VRSSFRDRREGYTDKAVVIRCVRKDQSS-------VTLKLYYLLNGSVRLGFWLQGKEYL 183
+ S + RR + I+ V +S +T+ Y
Sbjct: 292 M-SEIKRRR-------IYIKLVESTRSEDFSESKIITISFLYAT---------------- 327
Query: 184 LPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTT 243
+PV ++ AL ++D E+F+ + ++ A +S +K +D +
Sbjct: 328 MPVWLLFFALGISSDKEVFDMIDM-------QDCDASVINTISATIKESDKLCEDFRKSD 380
Query: 244 RLQCLQHIGEHFQPVIDGLQSESYYAVAETV---IRDYIFVHLNDNNDKFNLLIFMLQKL 300
+ + +D L S + AE+ I ++F ++ N +K L +M++ L
Sbjct: 381 KAR----------QYVDELVKSSRFPPAESFDDYIARFLFPDISGNRNKALFLGYMVKCL 430
Query: 301 FSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDF 360
DN D +N+ + LPG L+ L+ +L ++ K IQ ++ ++ + D
Sbjct: 431 LMAFTGKRKCDNKDDFRNKRLDLPGELLGRELRAQLRLAEKRMVKAIQRDLNSDRELQDL 490
Query: 361 FNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRA----GYTVQAERLNFLR 416
+ I SI T +T + +RA G R N L+
Sbjct: 491 --------------ERYIDASIVTNGLNRAFSTGSWCHPYKRAERCSGIVATLRRTNPLQ 536
Query: 417 FISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYY 476
+S R + ++AG + R P WG LC + TPDGE CGL+ ++ T V+S
Sbjct: 537 MMSDLRKTRQRVAYAG-KAGDARYPNPSYWGKLCFMSTPDGENCGLVKNLAVTAIVSS-- 593
Query: 477 DSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEK 536
++ ++ I GM L + + + L+G VG +S
Sbjct: 594 ----------RVMQPLIESFISCGM-SKLNDIPTEHIQRMDKIFLNGNWVGSCENSA--S 640
Query: 537 VVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPV----------- 585
V LR ++ S S+I +E+ + + +FT + +RP+
Sbjct: 641 FVFRLRCMRRS--SLIDPQVEI-----KRDKHHNEVRVFTDAGRILRPLLVVENLNKIRK 693
Query: 586 ---RNISLPSEESQNI-ELIGPFEQVFMEIRCPDGGDGGRRNAFPA-------THEEIHP 634
R+ S Q I E IG E+ +I+C G R+ F + TH E+ P
Sbjct: 694 PKGRSFSFHELMQQEIIEFIGVEEE--EDIQCA----WGIRHLFESEGAISSYTHCELDP 747
Query: 635 TGMLSVVANLTPYSDHNQSPRNMYQCQM-AKQTMGFSVQALKFRADQKLYHLQTPQTPIV 693
+ +L + + P+++HN + R +YQ + ++Q +G+S R D + L PQ P+
Sbjct: 748 SFLLGLSCGIIPFANHNFARRVLYQSEKHSQQAIGYSTTNPHIRVDTLSHQLYYPQRPLF 807
Query: 694 RT--------NTYTKYGID------EYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGM 739
+T + Y +G EY G NAIVAV + G++ ED++++N++S++RGM
Sbjct: 808 KTVIADCLGRSDYASFGRKNDFARPEYFNGQNAIVAVNVHQGFNQEDSLVMNRASLERGM 867
Query: 740 CHGQIYQTETIDLSD-DGNK-VDRGQKL-FRRNKDAKSLHSVIDSDGLPYVGQMIHPGEP 796
+ ++ D+ + DG K + +K+ F + + + +D DGLPYVG + +
Sbjct: 868 FRTEHLRSYKADVENKDGTKRLKLKEKIDFGKTESKRGRVDNLDDDGLPYVGASLQTNDI 927
Query: 797 YCSIYDKTTNSWRTNS--RKGSESVFVDYVAVDMKN-SKNLPQKANIRFRHTRNPIIGDK 853
+ K + S +S K +E V V + + KN A + R R P +GDK
Sbjct: 928 ---VIGKVSESGEDHSIKLKHTEKGMVQKVLLSANDEGKNF---AVVTLRQVRTPCLGDK 981
Query: 854 FSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
FSS HGQKGV L + PF+ G+ PD++INPHAFP+R T LLE+ K
Sbjct: 982 FSSMHGQKGVVGFLESQENFPFTH-EGIVPDIVINPHAFPTRQTPGQLLEAALGK 1035
>gi|66356143|gb|AAY45706.1| RNA polymerase IV second largest subunit [Zea mays]
Length = 1170
Score = 203 bits (516), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 235/955 (24%), Positives = 403/955 (42%), Gaps = 180/955 (18%)
Query: 37 HCRQAKISYTGKLMADVEFQYLD--------AGSPVVRERFNF---------GQFPVMLK 79
H R ++Y +L+ +V Q G+ ++ NF G PVM+K
Sbjct: 119 HARLQNMTYASRLIVEVTIQVYSLEKSDKSKTGNDGFVQKRNFMNETHWIFIGLLPVMVK 178
Query: 80 TRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVF---------RSVILPKQNYPMSM 130
+ C L + + + + GGYF++ G+E+VF R I + + +S
Sbjct: 179 SNLCLLHSLNESECL------FDAGGYFLVKGMEKVFIAQEQRCLRRLWISDRPCWTISF 232
Query: 131 VRSSFRDRREGYTDKAVVIRCVRKDQSS-------VTLKLYYLLNGSVRLGFWLQGKEYL 183
+ S + RR + I+ V +S +T+ Y
Sbjct: 233 M-SEIKRRR-------IYIKLVESTRSEDFSESKIITISFLYAT---------------- 268
Query: 184 LPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTT 243
+PV + AL ++D E+F+ + ++ A +S +K +D +
Sbjct: 269 MPVWLXXFALGISSDKEVFDMIX-------MQDCDASVINTISATIKESDKLCEDFRKSD 321
Query: 244 RLQCLQHIGEHFQPVIDGLQSESYYAVAETV---IRDYIFVHLNDNNDKFNLLIFMLQKL 300
+ + +D L S + AE+ I ++F ++ N +K L +M++ L
Sbjct: 322 KAR----------QYVDELVKSSRFPPAESFDDYIARFLFPDISGNRNKALFLGYMVKCL 371
Query: 301 FSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDF 360
DN D +N+ + LPG L+ L+ +L ++ K IQ ++ ++ + D
Sbjct: 372 LMAFTGKRKCDNKDDFRNKRLDLPGELLGRELRAQLRLAEKRMVKAIQRDLNSDRELQDL 431
Query: 361 FNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRA----GYTVQAERLNFLR 416
+ I SI T +T + +RA G R N L+
Sbjct: 432 --------------ERYIDASIVTNGLNRAFSTGSWCHPYKRAERCSGIVATLRRTNPLQ 477
Query: 417 FISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYY 476
+S R + ++AG + R P WG LC + TPDGE CGL+ ++ T V+S
Sbjct: 478 MMSDLRKTRQRVAYAG-KAGDARYPNPSYWGKLCFMSTPDGENCGLVKNLAVTAIVSS-- 534
Query: 477 DSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEK 536
++ ++ I GM L + + + L+G VG +S
Sbjct: 535 ----------RVMQPLIESFISCGM-SKLNDIPTEHIQRMDKIFLNGNWVGSCENSA--S 581
Query: 537 VVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPV----------- 585
V LR ++ S S+I +E+ + + +FT + +RP+
Sbjct: 582 FVFRLRCMRRS--SLIDPQVEI-----KRDKHHNEVRVFTDAGRILRPLLVVENLNKIRK 634
Query: 586 ---RNISLPSEESQNI-ELIGPFEQVFMEIRCPDGGDGGRRNAFPA-------THEEIHP 634
R+ S Q I E IG E+ +I+C G R+ F + TH E+ P
Sbjct: 635 PKGRSFSFHELMQQEIIEFIGVEEE--EDIQCA----WGIRHLFESEGAISSYTHCELDP 688
Query: 635 TGMLSVVANLTPYSDHNQSPRNMYQCQM-AKQTMGFSVQALKFRADQKLYHLQTPQTPIV 693
+ +L + + P+++HN + R +YQ + ++Q +G+S R D + L PQ P+
Sbjct: 689 SFLLGLSCGIIPFANHNFARRVLYQSEKHSQQAIGYSTTNPHIRVDTLSHQLYYPQRPLF 748
Query: 694 RT--------NTYTKYGID------EYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGM 739
+T + Y +G EY G NAIVAV + G++ ED++++N++S++RGM
Sbjct: 749 KTVIADCLGRSDYASFGRKNDFARPEYFNGQNAIVAVNVHQGFNQEDSLVMNRASLERGM 808
Query: 740 CHGQIYQTETIDLSD-DGNK-VDRGQKL-FRRNKDAKSLHSVIDSDGLPYVGQMIHPGEP 796
+ ++ D+ + DG K + +K+ F + + + +D DGLPYVG + +
Sbjct: 809 FRTEHLRSYKADVENKDGTKRLKLKEKIDFGKTESKRGRXDNLDDDGLPYVGASLQTNDI 868
Query: 797 YCSIYDKTTNSWRTNS--RKGSESVFVDYVAVDMKN-SKNLPQKANIRFRHTRNPIIGDK 853
+ K + S +S K +E V V + + KN A + R R P +GDK
Sbjct: 869 ---VIGKVSESGEDHSIKLKHTEKGMVQKVLLSANDEGKNF---AVVTLRQVRTPCLGDK 922
Query: 854 FSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
FSS HGQKGV L + PF+ G+ PD++INPHAFP+R T LLE+ K
Sbjct: 923 FSSMHGQKGVVGFLESQENFPFTH-EGIVPDIVINPHAFPTRQTPGQLLEAALGK 976
>gi|55273999|gb|AAV48870.1| RNA polymerase II second largest subunit [Climacodon
septentrionalis]
Length = 886
Score = 203 bits (516), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 209/795 (26%), Positives = 338/795 (42%), Gaps = 125/795 (15%)
Query: 184 LPVGIVLKALVDTNDLEIFNHLTCCYD----EKYKKEKGAVGSPLVSERVKIILAEVQDL 239
+P+ +V +AL +D +I H+ CYD + + K + V + +I L + +
Sbjct: 58 IPIWVVFRALGVISDRDILEHI--CYDMQDAQMLEMLKPCIDDGFVIQDREIALDFIGNR 115
Query: 240 SLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLN----DNNDKFNLLIF 295
TT GL E A+ +++ + H++ + K +
Sbjct: 116 GTTT-----------------GLNRERRLRYAQEILQKEMLPHISMAEGSESKKAYFFGY 158
Query: 296 MLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNG 355
+ +L D+ D + + L G L+ + + + +Q +E +
Sbjct: 159 RIHRLLLAALERRDLDDRDHFGKKRLDLAGPLLANLFRMLFRKLTKDVYRYLQKCVETHK 218
Query: 356 KKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFL 415
+ FNL+ K I ++ L TG Q + + +AG + R +
Sbjct: 219 E----FNLSLAVK------HNTITNGLKYSLATGNWGDQKKM-MSAKAGVSQVLNRYTYA 267
Query: 416 RFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMT--STCRVA 473
+S R + G + R+L WG +CP TP+G+ CGL+ +++ S V
Sbjct: 268 STLSHLRRCNTPLGREG-KIAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMSCISVG 326
Query: 474 S-------YYDSRG--NIRDFSKMRTSILRVLI-GVGM---------IPSLPKLVKSG-- 512
S + + G ++ + + T +V + GV M + ++ KL +
Sbjct: 327 SLSAPVIEFLEEWGLESLEENAHSATPCTKVFVNGVWMGVHRDPANLVKTIKKLRRKDDI 386
Query: 513 PPAVLSVLLD------------GRV---VGVIPSSEIEKVVAHLRRLKVSAASVIPDDLE 557
P V SV+ D GRV + ++ + ++ H+ +L + DDL
Sbjct: 387 SPEV-SVVRDIRERELRLYTDAGRVCRPLFIVENQQLTITKKHISQLSDKESGYKWDDLI 445
Query: 558 VGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQ----VFMEIRC 613
G V L + P+ + RN I P +Q + M +R
Sbjct: 446 KGGVIELLDAEEEETVMICMTPEDLELARN------------GIDPLQQDAADIDMSVRL 493
Query: 614 PDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQA 673
+ A TH EIHP+ +L V A++ P+ DHNQSPRN YQ M KQ MG +
Sbjct: 494 KTA-----QTAHKFTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYLTN 548
Query: 674 LKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKS 733
R D L PQ P+ T + E P G NAIVA+L Y+GY+ ED++I+N+S
Sbjct: 549 FLVRMDTMANILYYPQKPLATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSVIMNQS 608
Query: 734 SVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAK-----SLHSVIDSDGLPYVG 788
S+DRG+ IY +DL + + V + ++ + ++ + I+ DGL G
Sbjct: 609 SIDRGLFRS-IYYRSYMDL-EKKSGVQQLEEFGKPTRETTLRMKHGTYDKIEDDGLIAPG 666
Query: 789 Q-------MIHPGEPYCSIYDKTTNSWRTNSR-------KGSESVFVDYVAVDMKNSKNL 834
+I P +K R ++R K +ES +D V + N++
Sbjct: 667 TGVNGEDIIIGKTAPIPPDSEKLGQRTRQHTRRDVSTPLKSTESGIIDQVLI-TTNAEG- 724
Query: 835 PQK-ANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFP 893
QK IR R TR P IGDKF+SRHGQKG + DMPF+ G+ PD+IINPHA P
Sbjct: 725 -QKFVKIRVRSTRIPQIGDKFASRHGQKGTIGITYRQEDMPFTA-EGITPDIIINPHAIP 782
Query: 894 SRMTIAMLLESVAAK 908
SRMTI L+E + +K
Sbjct: 783 SRMTIGHLVECLLSK 797
>gi|260945433|ref|XP_002617014.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Clavispora
lusitaniae ATCC 42720]
gi|238848868|gb|EEQ38332.1| DNA-directed RNA polymerase III 130 kDa polypeptide [Clavispora
lusitaniae ATCC 42720]
Length = 1159
Score = 202 bits (515), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 121/300 (40%), Positives = 156/300 (52%), Gaps = 22/300 (7%)
Query: 628 THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
TH EI P +L VA L PY HNQSPRN YQC M KQ +G R D LY +
Sbjct: 681 THLEIEPFTVLGAVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFRRIDTLLYFMVY 740
Query: 688 PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
PQ P+V++ T D+ P G NA VAV++Y+GYD+EDA++LNKSS+DRG Q+ +
Sbjct: 741 PQQPMVKSKTIELIEYDKLPAGQNATVAVMSYSGYDIEDALVLNKSSIDRGFGRCQVVRK 800
Query: 748 ETIDLSDDGNKVDRGQKLFR--RNKDAKSLHSVIDSDGLPYVGQMIHPGEPYC------- 798
TI L N R N D H+ + DGL VG I G+ Y
Sbjct: 801 NTIVLKRYPNHTKDIVAGMRVDENGDPIFAHNALGPDGLGEVGMRIENGQVYANKQVPTN 860
Query: 799 ---SIYDKTTNSWRTNSR-------KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNP 848
S+ S +G E +VD V M S N + R TR P
Sbjct: 861 AGESVLGDHNQPQSAESHRETPAYYRGPEPSYVDQVM--MSVSDNDQALIKVLLRQTRRP 918
Query: 849 IIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
+GDKFSSRHGQKGVC + DMPF+ + G+ PD+I+NPH FPSRMT+ ++E ++ K
Sbjct: 919 ELGDKFSSRHGQKGVCGIIVQHEDMPFNDM-GISPDIIMNPHGFPSRMTVGKMIELISGK 977
Score = 105 bits (262), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 117/520 (22%), Positives = 213/520 (40%), Gaps = 97/520 (18%)
Query: 9 FEPLRELVRHHIESFDYMLDEGLSEMF--------------------------------- 35
F ++ LV+ H++SF+Y +D L ++
Sbjct: 48 FLKVKGLVKQHLDSFNYFVDVDLKKIIRANELVLSDVDPQFYLKYLDIRVGHKSSSAPGT 107
Query: 36 -------DHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGA 88
CR ++Y+ + DVE Y ++ + G+ P+ML++ +C L G
Sbjct: 108 KEVIMAPHECRLRDLTYSAPIYVDVE--YTRGRKIIMHKDLEIGRMPIMLRSNKCVLDGI 165
Query: 89 DSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVV 148
D ++ +E + GGYFI+NG E+V +++ +Q S R E KA+V
Sbjct: 166 DEHQMAVFEECPIDPGGYFIVNGTEKV---ILIQEQ-------LSKNRIIVEADEKKAIV 215
Query: 149 IRCVRKDQSSVTLKLY------YLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIF 202
Q+SVT + Y+++ + ++ +P+ +VLKA +D+EI
Sbjct: 216 -------QASVTSSTHERKSKTYVISKNEKIYLKHNSIAEDVPIVVVLKAAGIVSDMEIL 268
Query: 203 NHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQ------ 256
L C + +Y+ + I E L + T+ Q L +IG+ +
Sbjct: 269 -QLVCGANSQYQ------------DLFAINFEEAAKLEIFTQQQALLYIGKRVKTVRRAG 315
Query: 257 -PVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDS 315
P + LQ E A+A TVI LN + I M +K+ + + S+ D+ D
Sbjct: 316 APKLSQLQ-EGIEAIATTVIAHLTVSDLNFREKALYIAI-MARKVLMTMHNPSMVDDRDY 373
Query: 316 LQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPS 375
+ N+ + L G L+++ ++ + + K I ++ + +F L +I S
Sbjct: 374 VGNKRLELAGQLMSLLFEDLFKKFNTDFKANIDKILKKPSRTSEFDALLSINI-----HS 428
Query: 376 KQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRT 435
I + + TG + + +RAG T RL+++ + + + F R
Sbjct: 429 NNITMGMNRAISTGNWSLKRF--KMERAGVTHVLSRLSYISALGMMTRI--SSQFEKSRK 484
Query: 436 TS-VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVAS 474
S R L P +G LC TP+GE CGL+ ++ + +
Sbjct: 485 VSGPRALQPSQFGMLCTSDTPEGEACGLVKNLALMTHITT 524
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.320 0.137 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,311,378,107
Number of Sequences: 23463169
Number of extensions: 621919588
Number of successful extensions: 1382580
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 7162
Number of HSP's successfully gapped in prelim test: 7852
Number of HSP's that attempted gapping in prelim test: 1332609
Number of HSP's gapped (non-prelim): 38817
length of query: 910
length of database: 8,064,228,071
effective HSP length: 152
effective length of query: 758
effective length of database: 8,792,793,679
effective search space: 6664937608682
effective search space used: 6664937608682
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 82 (36.2 bits)