BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002545
(910 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9P7X8|RPA2_SCHPO Probable DNA-directed RNA polymerase I subunit RPA2
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=rpa2 PE=3 SV=2
Length = 1174
Score = 733 bits (1893), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 393/905 (43%), Positives = 557/905 (61%), Gaps = 89/905 (9%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
R+ +Y +L+ ++F + G P E G P+M+++ RCHL+G +L++ K
Sbjct: 106 ARERLTTYKSRLV--LKFSWSVNGGPRQSEMREVGMIPIMVRSNRCHLEGLSPAELIAHK 163
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
EE+ EMGGYFI+NG+E++ R +ILPK+N+P +++R SF +R Y+ + IRCVR DQS
Sbjct: 164 EESEEMGGYFIVNGIEKLIRMLILPKRNHPTAIIRPSFANRGTSYSQYGLSIRCVRPDQS 223
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
S+T L+YL NG F + EYL+P ++LKAL++T+D EIF +
Sbjct: 224 SLTNTLHYLNNGVTMFRFHWRKNEYLIPSMMILKALLETSDKEIFEGIV----------G 273
Query: 218 GAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRD 277
+G+ +++RV+++L + L ++ + LQ++G F+ V+ + + V +++
Sbjct: 274 KDLGNTFLTDRVELMLRAYKSYGLYSQTETLQYLGSKFRVVLGVAEDLTDVEVGRFLLQK 333
Query: 278 YIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLE 337
+ VHL + DKF LL+FM++KL++LV +DNPDS Q+QEILL G L LKEK+E
Sbjct: 334 VVLVHLREAKDKFRLLLFMIRKLYALVAGECCADNPDSPQHQEILLGGFLYGQILKEKIE 393
Query: 338 DWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGL 397
DWL + I ++ + DF + + +V K + IGT ++ L TG L + TGL
Sbjct: 394 DWLNSIRAQINLDVRRSAPGVDFSDRKYLTRVFSK-INNDIGTKLQYFLSTGNLVSNTGL 452
Query: 398 DLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDG 457
DLQQ GYTV AE+LNF RF+S FR VHRGA FA L+TT+VRKLLPE+WGF+CPVHTPDG
Sbjct: 453 DLQQATGYTVVAEKLNFYRFLSHFRMVHRGAFFAELKTTTVRKLLPEAWGFMCPVHTPDG 512
Query: 458 EPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVL 517
PCGLLNH+ C + ++ V IPSL + PP+V+
Sbjct: 513 SPCGLLNHLARKCEIVTHPSD--------------------VSQIPSLLLSLGVDPPSVV 552
Query: 518 S-------VLLDGRVVGVIPSSEIEKVVAHLRRLKVSAA-----------SVIPDDLEVG 559
V LDG++VG + V LR +K+ A + +P DLE+G
Sbjct: 553 GHESGWGCVQLDGKIVGWCTYKLAKHVADVLRLMKIEYAVKLRNGTATEPAKVPLDLEIG 612
Query: 560 YVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDG 619
YVP S G YPGLYLF++P + VRPV++IS + ++++GPFEQV+M+I C
Sbjct: 613 YVPPSHNGQYPGLYLFSNPARMVRPVKHIS-----TGELDMLGPFEQVYMDIAC------ 661
Query: 620 GRRNAFP-------ATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQ 672
FP +TH E PT +LS+VAN+TP+SD NQSPRNMYQCQM KQTMG
Sbjct: 662 -----FPKEIVPKVSTHVEYSPTNVLSIVANMTPFSDFNQSPRNMYQCQMGKQTMGTPGT 716
Query: 673 ALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNK 732
AL++R D KLY LQT QTP+VR + YG+D YP GTNA+VAV++YTGYDMEDAMILNK
Sbjct: 717 ALRYRTDNKLYRLQTGQTPVVRPKLHNTYGLDHYPNGTNAVVAVISYTGYDMEDAMILNK 776
Query: 733 SSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDA------KSLHSVIDSDGLPY 786
S+ +RG +G +Y+ E+ DLS K RG+ + A + +D+DGLP+
Sbjct: 777 SAHERGFGYGTVYKGESFDLS---QKRRRGEPVVHHFGFAPGSTPRREWLQKLDADGLPF 833
Query: 787 VGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAV---DMKNSKNLPQKANIRFR 843
+G + G+P + YD++T + G+E FVD V + D+ +S+ Q+ +++ R
Sbjct: 834 IGIKLEDGDPIVAYYDESTGQNFIETYHGTEPGFVDEVRLLGNDVGDSEC--QQIHVKLR 891
Query: 844 HTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLE 903
TR+PIIGDKFSSRHGQKG+CSQ WP +DMPF+ +GM+PD+IINPHAFPSRMTI M +E
Sbjct: 892 ITRSPIIGDKFSSRHGQKGICSQKWPTVDMPFT-ESGMQPDIIINPHAFPSRMTIGMFIE 950
Query: 904 SVAAK 908
S+A K
Sbjct: 951 SLAGK 955
>sp|Q75DS1|RPA2_ASHGO DNA-directed RNA polymerase I subunit RPA2 OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=RPA2 PE=3 SV=2
Length = 1196
Score = 719 bits (1857), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 395/880 (44%), Positives = 553/880 (62%), Gaps = 45/880 (5%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
R+ +Y GKL+ + + D G E + G PVML++ RCHL Q+LV K
Sbjct: 120 ARKRLTTYRGKLLLKLNWSVND-GEETFSEVRDCGPLPVMLQSNRCHLHKMSPQELVEHK 178
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQS 157
EE+ E+GGYFI+NG+E++ R +I+ ++N+PM+++R SF +R Y+ V IRCVR DQ+
Sbjct: 179 EESDELGGYFIVNGIEKLIRMLIVQRRNHPMAIIRPSFANRGTSYSHYGVQIRCVRPDQT 238
Query: 158 SVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEK 217
S T L+YL +G V F + EYL+PV ++LKAL D +D EIF+ +
Sbjct: 239 SQTNVLHYLNDGQVTFRFSWRKNEYLVPVVLILKALTDASDREIFDGIV----------- 287
Query: 218 GA-VGSPLVSERVKIILAEVQDL--SLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETV 274
GA + +++R++++L + L R Q LQ++G+ F+ V+ S Y V + +
Sbjct: 288 GADTSNSFLTDRLELLLRGFKKRFPQLLNRRQVLQYLGDKFRVVLQASPDMSDYLVGQEL 347
Query: 275 IRDYIFVHLND-NNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLK 333
+R + VHL D N DK N+L+FM++KL+SLV DNPD+ Q+QE+LL G L + +K
Sbjct: 348 LRRIVLVHLGDENTDKSNMLMFMIRKLYSLVAGECCPDNPDATQHQEVLLGGFLYGMIVK 407
Query: 334 EKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLAT 393
EK+E++L+ K IQ ++ N G DF + + +V+ + ++ IG+ ++ L TG L +
Sbjct: 408 EKIEEYLQNIKLQIQADV-NRGMPVDFKDRKYMTRVLTR-INENIGSKLQYFLSTGNLVS 465
Query: 394 QTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVH 453
Q+GLDLQQ +GYTV AE++NF RFIS FR VHRG+ FA L+TT+VRKLLPESWGFLCPVH
Sbjct: 466 QSGLDLQQVSGYTVVAEKINFYRFISHFRMVHRGSFFAQLKTTTVRKLLPESWGFLCPVH 525
Query: 454 TPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGP 513
TPDG PCGLLNH C++++ D SK+ T +L +G+ P+ V +
Sbjct: 526 TPDGSPCGLLNHFAHKCKIST------TQSDVSKIPT----LLYSLGVSPA--AHVTAAG 573
Query: 514 PAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAAS-VIPDDLEVGYVPLSLGGAYPGL 572
P++ V LDG++VG + V LR KV + +P DLE+GYVP S G YPGL
Sbjct: 574 PSLCCVQLDGKIVGWCSHEQGRIVADTLRYWKVEGKTDGLPLDLEIGYVPASKRGQYPGL 633
Query: 573 YLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEI 632
YLF + +RPVR + L ++ ++GPFEQV+M+I + + N TH E
Sbjct: 634 YLFGGHSRMMRPVRYLPLDKQD-----IVGPFEQVYMDIAVTP--EEIQNNVH--THVEF 684
Query: 633 HPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPI 692
PT +LS++ANLTP+SD NQSPRNMYQCQM KQTMG AL R+D KLY LQ+ QTPI
Sbjct: 685 SPTNILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGVALCHRSDNKLYRLQSGQTPI 744
Query: 693 VRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDL 752
V+ N Y YG+D +P GTNA+VAV++YTGYDM+DAMI+NKS+ +RG +G +Y+TE IDL
Sbjct: 745 VKANLYDDYGMDNFPNGTNAVVAVISYTGYDMDDAMIINKSADERGFSYGTVYKTEKIDL 804
Query: 753 SDDGNKVDRGQKLFRRNKDA--KSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRT 810
S + D + F D K +D DGLP +G + G+P C+ +D T N +
Sbjct: 805 SLSRGRGDPVTQHFGFGTDEWPKEWLEKLDEDGLPIIGSYVEEGDPICAYFDDTLNKTKI 864
Query: 811 NSRKGSESVFVDYVAV--DMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLW 868
+ SE +++ V + D N Q I++R R P IGDKFSSRHGQKGVCS+ W
Sbjct: 865 KTYHSSEPAYIEEVTLIGDESNKFQELQYITIKYRIRRVPQIGDKFSSRHGQKGVCSRKW 924
Query: 869 PDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
P +DMPFS TG++PD+IINPHAFPSRMTI M +ES+A K
Sbjct: 925 PTVDMPFSE-TGIQPDVIINPHAFPSRMTIGMFVESLAGK 963
>sp|O74633|RPA2_NEUCR DNA-directed RNA polymerase I subunit RPA2 OS=Neurospora crassa
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257
/ FGSC 987) GN=acr-2 PE=1 SV=2
Length = 1234
Score = 706 bits (1821), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 390/906 (43%), Positives = 556/906 (61%), Gaps = 74/906 (8%)
Query: 37 HCRQAKISYTGKLMADVEFQYLDAGSP--VVRERFNFGQFPVMLKTRRCHLQGADSQKLV 94
CR+ +SY GKL A E++ D G P VRE GQ P+M+K+ +CHLQ +LV
Sbjct: 120 ECRERHVSYRGKLSATFEYRIND-GEPHEFVRE---LGQMPIMVKSNKCHLQNNSPAQLV 175
Query: 95 SLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRK 154
+ KEE+ E+GGYFI+NG+E++ R +++ ++N+P+++VR SF++R YT +++R VR
Sbjct: 176 ARKEESEELGGYFIVNGIEKLIRMLLVNRRNFPLAIVRPSFQNRGASYTPYGIIMRSVRP 235
Query: 155 DQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYK 214
D++S T L+YL +G+V F + EYL+PV +++KALV+TND EIF L K
Sbjct: 236 DETSQTNVLHYLSDGNVTFRFSWRKNEYLIPVMMIMKALVETNDREIFEGLVGPPQSK-- 293
Query: 215 KEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETV 274
V + +++RV+++L + L ++ Q ++G+ F+ V+ + S Y V
Sbjct: 294 ----GVANTFLTDRVELLLRTYKKYGLYSKTQTRAYLGQKFRVVLGVPDTMSDYEVGTEF 349
Query: 275 IRDYIFVHLNDNN-------DKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHL 327
+R + VHL + DKFN+L+FM +KL++LV DNPD++QNQEILL G L
Sbjct: 350 LRKIVLVHLGSQDVTEQQDADKFNMLLFMCRKLYALVAGDCAVDNPDAVQNQEILLGGFL 409
Query: 328 ITIYLKEKLEDWLRKG-KKLIQDEIENNGK---KFDFFNLANIKKVMEKNPSKQIGTSIE 383
+KE+LE+ L + ++D + N + D F L + + + ++ IG S+E
Sbjct: 410 YGQIIKERLEELLTVSFRASLRDYLRRNPTVSFQSDTF-LKDFPIAIFRRANENIGQSLE 468
Query: 384 TMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLP 443
L TG L + +GLDLQQ +G+TV AE+LNFLRFIS FR VHRG+ FA L+TT+VRKLLP
Sbjct: 469 YFLSTGNLVSPSGLDLQQVSGFTVVAEKLNFLRFISHFRMVHRGSFFAQLKTTTVRKLLP 528
Query: 444 ESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIP 503
ESWGFLCPVHTPDG PCGLLNH+ C++ + S ++I R+ +G++
Sbjct: 529 ESWGFLCPVHTPDGSPCGLLNHLAHKCKIMTE----------SVDASTISRLAFELGVV- 577
Query: 504 SLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPL 563
+ + + V+LDGR+VG E + + LR KV+ + +P LE+GYVP
Sbjct: 578 ---NISSAATSESVVVMLDGRIVGWCTPEECKSIAETLRYWKVNGENGVPLQLEIGYVPP 634
Query: 564 SLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRN 623
S GG+YPGLY+ + P + VRPV+ + L E+ +GP EQ +M I C + +
Sbjct: 635 SNGGSYPGLYMSSQPARMVRPVKYLPLQKED-----FVGPQEQPYMSIACTE------QE 683
Query: 624 AFP--ATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQK 681
P +TH E PT +LS++AN+TP+SD NQSPRNMYQCQM KQTMG AL R D K
Sbjct: 684 VIPGDSTHVEFDPTNILSILANMTPFSDFNQSPRNMYQCQMGKQTMGTPATALAHRTDNK 743
Query: 682 LYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCH 741
+Y LQT QTP+VR + YG D +P G NA+VAV++YTGYDM+DAMILNKS+ +RG H
Sbjct: 744 MYRLQTGQTPVVRAPLHNTYGFDNFPNGMNAVVAVISYTGYDMDDAMILNKSAHERGFGH 803
Query: 742 GQIYQTETIDLSDDGNKVDRGQ--KLFRRNKDA---KSLHSVIDSDGLPYVGQMIHPGEP 796
G IY+T+ + L DD K+F ++ +S ++D+DGLP VG+++ G+
Sbjct: 804 GSIYKTKKVSLKDDSRTRSAKSIVKMFGFAPNSTIRESTRDMLDNDGLPRVGRLLREGDV 863
Query: 797 YCSIY-------------DKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLP-QKANIRF 842
C+ + D T+ R K SE FV+ V V ++ P Q +I+
Sbjct: 864 ICAWHTVSADYNGQLVNRDGVTHYERY---KDSEDAFVEEVRVIGADNGTEPLQTVSIKL 920
Query: 843 RHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLL 902
R R+P+IGDKFSSRHGQKGV SQ WP DMPFS TG++PD+IINPHAFPSRMTI M +
Sbjct: 921 RIPRSPVIGDKFSSRHGQKGVLSQKWPATDMPFSE-TGIQPDVIINPHAFPSRMTIGMFV 979
Query: 903 ESVAAK 908
ES+A K
Sbjct: 980 ESLAGK 985
>sp|P22138|RPA2_YEAST DNA-directed RNA polymerase I subunit RPA135 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPA135 PE=1
SV=1
Length = 1203
Score = 701 bits (1808), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 384/879 (43%), Positives = 549/879 (62%), Gaps = 44/879 (5%)
Query: 39 RQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKE 98
RQ SY GKL+ +++ ++ G + E + G PVML++ RCHL +LV KE
Sbjct: 127 RQRLTSYRGKLLLKLKWS-VNNGEENLFEVRDCGGLPVMLQSNRCHLNKMSPYELVQHKE 185
Query: 99 EAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSS 158
E+ E+GGYFI+NG+E++ R +I+ ++N+PM+++R SF +R Y+ + IR VR DQ+S
Sbjct: 186 ESDEIGGYFIVNGIEKLIRMLIVQRRNHPMAIIRPSFANRGASYSHYGIQIRSVRPDQTS 245
Query: 159 VTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKG 218
T L+YL +G V F + EYL+PV ++LKAL T+D EIF+ +
Sbjct: 246 QTNVLHYLNDGQVTFRFSWRKNEYLVPVVMILKALCHTSDREIFDGII----------GN 295
Query: 219 AVGSPLVSERVKIILAEVQDL--SLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIR 276
V +++R++++L + L R Q LQ++G+ F+ V +S V + V+
Sbjct: 296 DVKDSFLTDRLELLLRGFKKRYPHLQNRTQVLQYLGDKFRVVFQASPDQSDLEVGQEVLD 355
Query: 277 DYIFVHL--NDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKE 334
+ VHL + + DKF +L+FM++KL+SLV DNPD+ Q+QE+LL G L + LKE
Sbjct: 356 RIVLVHLGKDGSQDKFRMLLFMIRKLYSLVAGECSPDNPDATQHQEVLLGGFLYGMILKE 415
Query: 335 KLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQ 394
K++++L+ ++ +I N G +F + + +V+ + ++ IG+ ++ L TG L +Q
Sbjct: 416 KIDEYLQNIIAQVRMDI-NRGMAINFKDKRYMSRVLMR-VNENIGSKMQYFLSTGNLVSQ 473
Query: 395 TGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHT 454
+GLDLQQ +GYTV AE++NF RFIS FR VHRG+ FA L+TT+VRKLLPESWGFLCPVHT
Sbjct: 474 SGLDLQQVSGYTVVAEKINFYRFISHFRMVHRGSFFAQLKTTTVRKLLPESWGFLCPVHT 533
Query: 455 PDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPP 514
PDG PCGLLNH CR+++ D S+ I +L +G+ P+ P
Sbjct: 534 PDGSPCGLLNHFAHKCRISTQQS------DVSR----IPSILYSLGVAPASHTFAAG--P 581
Query: 515 AVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASV-IPDDLEVGYVPLSLGGAYPGLY 573
++ V +DG+++G + + + + LR KV + +P DLE+GYVP S G YPGLY
Sbjct: 582 SLCCVQIDGKIIGWVSHEQGKIIADTLRYWKVEGKTPGLPIDLEIGYVPPSTRGQYPGLY 641
Query: 574 LFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPATHEEIH 633
LF + +RPVR + L E+ ++GPFEQV+M I + N TH E
Sbjct: 642 LFGGHSRMLRPVRYLPLDKED-----IVGPFEQVYMNIAVTP--QEIQNNVH--THVEFT 692
Query: 634 PTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIV 693
PT +LS++ANLTP+SD NQSPRNMYQCQM KQTMG AL R+D KLY LQT QTPIV
Sbjct: 693 PTNILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGVALCHRSDNKLYRLQTGQTPIV 752
Query: 694 RTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLS 753
+ N Y YG+D +P G NA+VAV++YTGYDM+DAMI+NKS+ +RG +G +Y+TE +DL+
Sbjct: 753 KANLYDDYGMDNFPNGFNAVVAVISYTGYDMDDAMIINKSADERGFGYGTMYKTEKVDLA 812
Query: 754 DDGNKVDRGQKLFRRNKDA--KSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTN 811
+ N+ D + F D K +D DGLPY+G + G+P C+ +D T N +
Sbjct: 813 LNRNRGDPITQHFGFGNDEWPKEWLEKLDEDGLPYIGTYVEEGDPICAYFDDTLNKTKIK 872
Query: 812 SRKGSESVFVDYVAV--DMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWP 869
+ SE +++ V + D N Q +I++R R P IGDKFSSRHGQKGVCS+ WP
Sbjct: 873 TYHSSEPAYIEEVNLIGDESNKFQELQTVSIKYRIRRTPQIGDKFSSRHGQKGVCSRKWP 932
Query: 870 DIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
IDMPFS TG++PD+IINPHAFPSRMTI M +ES+A K
Sbjct: 933 TIDMPFS-ETGIQPDIIINPHAFPSRMTIGMFVESLAGK 970
>sp|Q54BM1|RPA2_DICDI DNA-directed RNA polymerase I subunit rpa2 OS=Dictyostelium
discoideum GN=polr1b PE=3 SV=1
Length = 1130
Score = 682 bits (1759), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 386/963 (40%), Positives = 557/963 (57%), Gaps = 93/963 (9%)
Query: 10 EPLRELVRHHIESFDYMLDEGLSEM--------FDH------------------------ 37
E L+ L++ HI+SFD+ D G+ + F+H
Sbjct: 3 EELKSLIQPHIDSFDFFTDHGIDLVLKDSEPLYFEHNSTQYKIRFTDLKLSRPTRNIVEK 62
Query: 38 --------CRQAKISYTGKLMADV------EFQYLDAGSPVVRER--------FNFGQFP 75
R+ +Y + E +D G+ V + + G+ P
Sbjct: 63 EIKLYPNESRETGTTYNAPFKGAIGLYEVNEMDEMDDGTEVDYNKQEPTHTFEVDLGRLP 122
Query: 76 VMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSF 135
+M+K+R CHL G +KL+ +EE E GGYFI+NG E+V R +++ K N+P+++ R ++
Sbjct: 123 IMVKSRYCHLNGMSPEKLIESREEELEQGGYFIVNGNEKVVRMLVMTKANHPVALHRKAW 182
Query: 136 RDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVD 195
+R GYT + IRCVR D+SS+T L+Y+ +G L F + +E+ LP ++LKAL D
Sbjct: 183 TNRGPGYTKNGITIRCVRPDRSSITNNLHYINDGQTTLRFLYRRQEFFLPATLLLKALKD 242
Query: 196 TNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHF 255
T + EI+ ++ +G + +++RV++ L E + ++ T+ + L +IG F
Sbjct: 243 TTEKEIYENIV----------QGDNENTFLTDRVELSLREQKINNINTQEEVLDYIGSRF 292
Query: 256 QPVIDGLQSESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDS 315
+ S S + I ++FVHL + NDK+NLLI M+QKL+++V +DN DS
Sbjct: 293 RARTQFPPSFSNIKIGRWFINQFVFVHLPNYNDKYNLLILMIQKLYAMVGGKCGTDNIDS 352
Query: 316 LQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPS 375
QE+LL GH+ + LKEKL ++L K + E+ K D A +KKV++KN
Sbjct: 353 PAFQEVLLAGHIYGMILKEKLTEYLESTKSFVLKSFEDKKKSGDKLPDA-LKKVLDKN-- 409
Query: 376 KQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRT 435
+I L TG L + +G+DLQQ +G+ V A++LNFLRFIS FR++HRGA FA ++T
Sbjct: 410 FKIADRFSYFLATGNLRSSSGIDLQQTSGFCVIADKLNFLRFISHFRSIHRGAFFATMKT 469
Query: 436 TSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRV 495
T++RKL+PESWGF CPVHTPDG PCGLLNH++S C V ++ K +T +
Sbjct: 470 TAIRKLMPESWGFFCPVHTPDGAPCGLLNHLSSNCLVTVDAAQDPTVQ---KAQTLLPSF 526
Query: 496 LIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK-VSAASVIPD 554
L GM+P +V L++ LDGRV+G I E++V LR L+ + IP
Sbjct: 527 LAAHGMLPI--DMVSVYQHQYLTITLDGRVLGKIEPKAGEEMVKMLRYLRSMGNEPSIPK 584
Query: 555 DLEVGYVPLS--LGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIR 612
+E+ Y P + G Y G+ LFT+ +F+RPV N++ QN ELIGP EQ++MEI
Sbjct: 585 TMEISYAPPTNVENGQYSGISLFTTGARFMRPVVNLT----SGQN-ELIGPQEQLYMEIA 639
Query: 613 C-PDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSV 671
P G TH E PT M S++ANLTP+SD+NQSPRNMYQCQMAKQTMG +
Sbjct: 640 VVPHEVIKG-----VTTHIETSPTAMFSLLANLTPFSDYNQSPRNMYQCQMAKQTMGTPL 694
Query: 672 QALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILN 731
+ FR D KLY +Q Q PIV T K+ ++YP G NA++AV++ TGYDMEDAMI+N
Sbjct: 695 HSYPFRTDNKLYKVQNVQKPIVHTKNQFKFRCNDYPHGCNAVIAVISNTGYDMEDAMIIN 754
Query: 732 KSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRR-NKDAKSLHSVIDSDGLPYVGQM 790
KS+ +RG HG +Y+ E IDL ++ ++ + F R N L ID+DGLP+VG++
Sbjct: 755 KSAYERGFGHGSVYKNEYIDLDQGLSRFEQKKTFFGRPNTVVDELDKFIDTDGLPFVGRL 814
Query: 791 IHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDM--KNSKNLPQKAN---IRFRHT 845
I PGEPY + + T KG E +++ V + + P K N ++ R
Sbjct: 815 IKPGEPYYTYIRPSDGRQVTKDYKGKEEAYIEDVRIIFGPNGATRDPSKINNICVKLRFN 874
Query: 846 RNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESV 905
RNP+IGDKFSSRHGQKGV SQLWP+I+MPF+ +GM+PD+IINP+AFPSRMTI ML+E +
Sbjct: 875 RNPVIGDKFSSRHGQKGVLSQLWPEINMPFTE-SGMKPDVIINPNAFPSRMTIGMLVEIL 933
Query: 906 AAK 908
A K
Sbjct: 934 AGK 936
>sp|P70700|RPA2_MOUSE DNA-directed RNA polymerase I subunit RPA2 OS=Mus musculus
GN=Polr1b PE=2 SV=2
Length = 1135
Score = 680 bits (1754), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 387/948 (40%), Positives = 544/948 (57%), Gaps = 97/948 (10%)
Query: 12 LRELVRHHIESFDYMLDEGLSEMFD----------------------------------- 36
L++L R H++SF+Y EGLS
Sbjct: 35 LQDLTRAHVDSFNYAALEGLSHAVQAIPPFEFAFKDERISLTIVDAVISPPSVPKGTICK 94
Query: 37 -------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGAD 89
CR K +Y G+L AD+ + ++++ G P+M+K++ C+L
Sbjct: 95 DLNVYPAECRGRKSTYRGRLTADISWAVNGVPKGIIKQFL--GYVPIMVKSKLCNLYNLP 152
Query: 90 SQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVI 149
+ L+ EEA EMGGYFI+NG+E+V R +I+P++N+P++MVR ++ R GYT V +
Sbjct: 153 PRVLIEHHEEAEEMGGYFIINGIEKVIRMLIVPRRNFPIAMVRPKWKSRGLGYTQFGVSM 212
Query: 150 RCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY 209
RCVR++ S+V + L+Y+ NG+V L F + + + LP+G LKALV +D +IF L
Sbjct: 213 RCVREEHSAVNMNLHYVENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELI--- 269
Query: 210 DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYA 269
KE+ + VS+ ++I++ E ++ Q L ++GE F+ +
Sbjct: 270 ---KGKEEDSFFRNSVSQMLRIVIEE----GCHSQKQVLNYLGECFRVKLSLPDWYPNVE 322
Query: 270 VAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
AE ++ I +HL N DKF LL M +KLF+L + DNPDSL NQE+L PG L
Sbjct: 323 AAEFLLNQCICIHLQSNTDKFYLLCLMTRKLFALARGECMDDNPDSLVNQEVLSPGQLFL 382
Query: 330 IYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTG 389
++LKEK+E+WL K ++ + + NL I + ++ E +L TG
Sbjct: 383 MFLKEKMENWLVSIKIVLDKRAQKANVSINNENLMKIFSM-----GTELTRPFEYLLATG 437
Query: 390 RLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFL 449
L ++TGL Q +G V A++LNFLR++S FR VHRGA+FA +RTT+VR+LLPESWGFL
Sbjct: 438 NLRSKTGLGFLQDSGLCVVADKLNFLRYLSHFRCVHRGAAFAKMRTTTVRRLLPESWGFL 497
Query: 450 CPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLV 509
CPVHTPDG PCGLLNH+T+ C V + + SI +L G+G+ P V
Sbjct: 498 CPVHTPDGAPCGLLNHLTAVCEVVTKF----------VYTASIPALLCGLGVTP-----V 542
Query: 510 KSGPPAVLS----VLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSL 565
+ P S VLLDG +VG + +V LRR KV IP +EV +P++
Sbjct: 543 DTAPCRPYSDCYPVLLDGVMVGWVDKDLAPEVADTLRRFKVLREKRIPPWMEVALIPMTG 602
Query: 566 GGA-YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRC-PDGGDGGRRN 623
+ YPGL+LFT+P + VRPV+N+ L EE LIG EQ+FM + D GG
Sbjct: 603 KPSLYPGLFLFTTPCRLVRPVQNLELGREE-----LIGTMEQLFMNVAIFEDEVFGGI-- 655
Query: 624 AFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLY 683
+TH+E+ P +LSV+AN P+SDHNQSPRNMYQCQM KQTMGF + + R+D KLY
Sbjct: 656 ---STHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQNRSDNKLY 712
Query: 684 HLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQ 743
LQTPQ+P+VR Y Y +D YP GTNAIVAV++YTGYDMEDAMI+NK+S +RG HG
Sbjct: 713 RLQTPQSPLVRPCMYDFYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGS 772
Query: 744 IYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDK 803
+Y++E IDLS+ + + + D + + +D DGLP++G + G+PY S +
Sbjct: 773 VYKSEFIDLSEKFKQGEDNLVFGVKPGDPRVMQK-LDDDGLPFIGAKLEYGDPYYSYLNL 831
Query: 804 TTNSWRTNSRKGSESVFVDYVAV---DMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQ 860
T K E+ VD + V DM + K + I R RNP IGDKF+SRHGQ
Sbjct: 832 NTGEGFVVYYKSKENCVVDNIKVCSNDMGSGKF--KCICITVRIPRNPTIGDKFASRHGQ 889
Query: 861 KGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
KG+ S+LWP DMPF+ +GM PD++ NPH FPSRMTI ML+ES+A K
Sbjct: 890 KGILSRLWPAEDMPFTE-SGMMPDILFNPHGFPSRMTIGMLIESMAGK 936
>sp|Q9H9Y6|RPA2_HUMAN DNA-directed RNA polymerase I subunit RPA2 OS=Homo sapiens
GN=POLR1B PE=1 SV=2
Length = 1135
Score = 679 bits (1751), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/941 (40%), Positives = 536/941 (56%), Gaps = 83/941 (8%)
Query: 12 LRELVRHHIESFDYMLDEGLS--------------------EMFD--------------- 36
L+EL R H+ESF+Y + EGL + D
Sbjct: 35 LQELTRAHVESFNYAVHEGLGLAVQAIPPFEFAFKDERISFTILDAVISPPTVPKGTICK 94
Query: 37 -------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGAD 89
CR + +Y GKL AD+ + ++++ G P+M+K++ C+L+
Sbjct: 95 EANVYPAECRGRRSTYRGKLTADINWAVNGISKGIIKQFL--GYVPIMVKSKLCNLRNLP 152
Query: 90 SQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVI 149
Q L+ EEA EMGGYFI+NG+E+V R +I+P++N+P++M+R ++ R GYT V +
Sbjct: 153 PQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWKTRGPGYTQYGVSM 212
Query: 150 RCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY 209
CVR++ S+V + L+YL NG+V L F + + + LP+G LKALV +D +IF L
Sbjct: 213 HCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELI--- 269
Query: 210 DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYA 269
KE + VS+ ++I++ E +T+ Q L ++GE F+ ++
Sbjct: 270 ---KGKEDDSFLRNSVSQMLRIVMEE----GCSTQKQVLNYLGECFRVKLNVPDWYPNEQ 322
Query: 270 VAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
AE + I +HL N +KF +L M +KLF+L + DNPDSL NQE+L PG L
Sbjct: 323 AAEFLFNQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMEDNPDSLVNQEVLTPGQLFL 382
Query: 330 IYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTG 389
++LKEKLE WL K + + + NL I + + E + TG
Sbjct: 383 MFLKEKLEGWLVSIKIAFDKKAQKTSVSMNTDNLMRIFTM-----GIDLTKPFEYLFATG 437
Query: 390 RLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFL 449
L ++TGL L Q +G V A++LNF+R++S FR VHRGA FA +RTT+VR+LLPESWGFL
Sbjct: 438 NLRSKTGLGLLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVRRLLPESWGFL 497
Query: 450 CPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLV 509
CPVHTPDGEPCGL+NH+T+ C V + + +I L +GV I P
Sbjct: 498 CPVHTPDGEPCGLMNHLTAVCEVVTQFVYTASI--------PALLCNLGVTPIDGAPHRS 549
Query: 510 KSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGA- 568
S VLLDG +VG + + LR KV IP +EV +P++ +
Sbjct: 550 YS---ECYPVLLDGVMVGWVDKDLAPGIADSLRHFKVLREKRIPPWMEVVLIPMTGKPSL 606
Query: 569 YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPAT 628
YPGL+LFT+P + VRPV+N++L EE LIG EQ+FM + + A T
Sbjct: 607 YPGLFLFTTPCRLVRPVQNLALGKEE-----LIGTMEQIFMNVAIFED----EVFAGVTT 657
Query: 629 HEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTP 688
H+E+ P +LSV+AN P+SDHNQSPRNMYQCQM KQTMGF + + R+D KLY LQTP
Sbjct: 658 HQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTP 717
Query: 689 QTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTE 748
Q+P+VR + Y Y +D YP GTNAIVAV++YTGYDMEDAMI+NK+S +RG HG +Y++E
Sbjct: 718 QSPLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSE 777
Query: 749 TIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSW 808
IDLS+ + D + D + L +D DGLP++G + G+PY S + T
Sbjct: 778 FIDLSEKIKQGDSSLVFGIKPGDPRVLQK-LDDDGLPFIGAKLQYGDPYYSYLNLNTGES 836
Query: 809 RTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHTRNPIIGDKFSSRHGQKGVCSQL 867
K E+ VD + V ++ + K I R RNP IGDKF+SRHGQKG+ S+L
Sbjct: 837 FVMYYKSKENCVVDNIKVCSNDTGSGKFKCVCITMRVPRNPTIGDKFASRHGQKGILSRL 896
Query: 868 WPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
WP DMPF+ +GM PD++ NPH FPSRMTI ML+ES+A K
Sbjct: 897 WPAEDMPFTE-SGMVPDILFNPHGFPSRMTIGMLIESMAGK 936
>sp|Q5REE8|RPA2_PONAB DNA-directed RNA polymerase I subunit RPA2 OS=Pongo abelii
GN=POLR1B PE=2 SV=1
Length = 1136
Score = 677 bits (1747), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 383/941 (40%), Positives = 533/941 (56%), Gaps = 83/941 (8%)
Query: 12 LRELVRHHIESFDYMLDEGLS--------------------EMFD--------------- 36
L+EL R H+ESF+Y + EGL + D
Sbjct: 35 LQELTRAHVESFNYAVHEGLGLAVQAIPPFEFAFKDERISFTILDAVISPPTVPKGTICK 94
Query: 37 -------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGAD 89
CR + +Y GKL AD+ + ++++ G P+M+K++ C+L
Sbjct: 95 EVSVYPAECRGRRCTYRGKLTADISWAVNGISKGIIKQFL--GYVPIMVKSKLCNLYNLP 152
Query: 90 SQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVI 149
Q L+ EEA EMGGYFI+NG+E+V R +I+P++N+P++MVR ++ R GYT V +
Sbjct: 153 PQALIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMVRPKWKTRGPGYTHYGVSM 212
Query: 150 RCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY 209
CVR++ S+V + L+YL NG+V L F + + + LP+G LKALV +D +IF L
Sbjct: 213 HCVREEHSAVNMNLHYLENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELI--- 269
Query: 210 DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYA 269
KE + VS+ ++I++ E +T+ Q L ++GE F+ ++
Sbjct: 270 ---KGKEDDSFLRNSVSQMLRIVMEE----GCSTQKQVLNYLGECFRVKLNVPDWYPNEQ 322
Query: 270 VAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
AE + I +HL N +KF +L M +KLF+L + DNPDSL NQE+L PG L
Sbjct: 323 AAEFLFNQCICIHLKSNTEKFYMLCLMTRKLFALAKGECMEDNPDSLVNQEVLTPGQLFL 382
Query: 330 IYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTG 389
++LKEKLE WL K + + + NL I + + E + TG
Sbjct: 383 MFLKEKLEGWLVSIKIAFDKKAQKTNVSMNTDNLMRIFTM-----GIDLTKPFEYLFATG 437
Query: 390 RLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFL 449
L ++TGL L Q +G V A++LNF+R++S FR VHRGA FA +RTT+VR+LLPESWGFL
Sbjct: 438 NLRSKTGLGLLQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVRRLLPESWGFL 497
Query: 450 CPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLV 509
CPVHTPDGEPCGL+NH+T+ C V + + +I L +GV I P
Sbjct: 498 CPVHTPDGEPCGLMNHLTAVCEVVTQFVYTASI--------PALLCNLGVTPIDGAPHRS 549
Query: 510 KSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGA- 568
S VLLDG +VG + + LR KV IP EV +P++ +
Sbjct: 550 YS---ECYPVLLDGVMVGWVDKELAPGIADSLRHFKVLREKRIPPWTEVVLIPMTGKPSL 606
Query: 569 YPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPAT 628
YPGL+LFT+P + VRPV+N+ L EE LIG EQ+FM + + A T
Sbjct: 607 YPGLFLFTTPCRLVRPVQNLELGKEE-----LIGTMEQIFMNVAIFED----EVFAGVTT 657
Query: 629 HEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTP 688
H+E+ P +LSV+AN P+SDHNQSPRNMYQCQM KQTMGF + + R+D KLY LQTP
Sbjct: 658 HQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTP 717
Query: 689 QTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTE 748
Q+P+VR + Y Y +D YP GTNAIVAV++YTGYDMEDAMI+NK+S +RG HG +Y++E
Sbjct: 718 QSPLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSE 777
Query: 749 TIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSW 808
IDLS+ + D + D + L +D DGLP++G + G+PY S + T
Sbjct: 778 FIDLSEKIKQGDSSLVFGMKPGDPRILQK-LDDDGLPFIGAKLQYGDPYYSYLNLNTGES 836
Query: 809 RTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHTRNPIIGDKFSSRHGQKGVCSQL 867
K E+ VD + V ++ + K I R RNP IGDKF+SRHGQKG+ S+L
Sbjct: 837 FVMYYKSKENCVVDNIKVCSNDTGSGKFKCVCITMRVPRNPTIGDKFASRHGQKGILSRL 896
Query: 868 WPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
WP DMPF+ +GM PD++ NPH FPSRMTI ML+ES+A K
Sbjct: 897 WPAEDMPFTE-SGMVPDILFNPHGFPSRMTIGMLIESMAGK 936
>sp|O54888|RPA2_RAT DNA-directed RNA polymerase I subunit RPA2 OS=Rattus norvegicus
GN=Polr1b PE=1 SV=1
Length = 1135
Score = 616 bits (1588), Expect = e-175, Method: Compositional matrix adjust.
Identities = 367/963 (38%), Positives = 513/963 (53%), Gaps = 127/963 (13%)
Query: 12 LRELVRHHIESFDYMLDEGLSEMFD----------------------------------- 36
L++L R H++SF+Y + EGLS
Sbjct: 35 LQDLTRAHVDSFNYAVLEGLSHAVQAIPPFEFAFKDERISLTIVDAAISPPAVPKGTICK 94
Query: 37 -------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGAD 89
CR + +Y GKL AD+ + ++++ G P+M+K++ C+L
Sbjct: 95 ELNIYPAECRGRRSTYRGKLTADISWAVNGVPKGIIKQFL--GXVPIMVKSKLCNLYNLP 152
Query: 90 SQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVI 149
Q L+ EEA EMGGYFI+NG+E+V R +I+P++N+P++M+R ++ R GYT V I
Sbjct: 153 PQVLIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPIAMIRPKWKSRGLGYTQFGVSI 212
Query: 150 RCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY 209
CVR++ S+V + L+Y+ NG+V L F + + + LP+G LKALV +D +IF L
Sbjct: 213 HCVREEHSAVNMNLHYVENGTVMLNFIYRKELFFLPLGFALKALVSFSDYQIFQELI--- 269
Query: 210 DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYA 269
KE+ + VS+ ++I++ E T+ Q L ++GE F+ +
Sbjct: 270 ---KGKEEDSFFKNSVSQMLRIVMEE----GCHTQKQVLDYLGERFRVKLSLPDWYPNAE 322
Query: 270 VAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLIT 329
AE + I +HL N DKF LL M +KLF+L + DNPDSL NQE+L PG L
Sbjct: 323 AAEFLFNQCICIHLKSNTDKFYLLCLMTRKLFALARGECMEDNPDSLVNQEVLTPGQLFL 382
Query: 330 IYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTG 389
++LKEK+E+WL K + + + NL I + ++ E +L TG
Sbjct: 383 MFLKEKMENWLLSIKIALDKRAQKTNVSINNENLMKIFSM-----GTELTRPFEYLLATG 437
Query: 390 RLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFL 449
L ++TGL Q +G V A++LNF+R++S FR VHRGA FA +RTT+VRKLLPESWGFL
Sbjct: 438 NLRSKTGLGFMQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVRKLLPESWGFL 497
Query: 450 CPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLV 509
CPVHTPDG PCGLLNH+T+ C V + + SI +L G+G+ P V
Sbjct: 498 CPVHTPDGAPCGLLNHLTAVCEVVTKF----------VYTASIPALLCGLGVTP-----V 542
Query: 510 KSGPPAVLS----VLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSL 565
+ P S VLLDG +VG + +V LRR KV SL
Sbjct: 543 DAAPCRPYSDCYPVLLDGVMVGWVDKELAPEVADTLRRFKVLRERRCS----------SL 592
Query: 566 GGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRR--- 622
G P + + P + SL + E+ C + G G RR
Sbjct: 593 DGGGPDSHDRKAKPVPRAVPLHHSLQAGEA-----------------CAEPGAGQRRARW 635
Query: 623 NAFPATHEEIH----------------PTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQT 666
N A HE H P+ V+AN P+SDHNQSPRNMYQCQM KQT
Sbjct: 636 NYGAALHEHCHLRGRGFWWSFHTPGALPSQPAEVIANFIPFSDHNQSPRNMYQCQMGKQT 695
Query: 667 MGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMED 726
MGF + + R+D KLY LQTPQ+P+VR Y Y +D YP GTNAIVAV++YTGYDMED
Sbjct: 696 MGFPLLTYQDRSDNKLYRLQTPQSPLVRPCMYDHYDMDNYPIGTNAIVAVISYTGYDMED 755
Query: 727 AMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPY 786
AMI+NK+S +RG HG +Y++E IDLS+ + D + D + + +D+DGLP+
Sbjct: 756 AMIVNKASWERGFAHGSVYKSEFIDLSEKFKQGDDSLVFGVKPGDPRVMQK-LDNDGLPF 814
Query: 787 VGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKA-NIRFRHT 845
+G + G+PY + T K E+ VD + V ++ + K + R
Sbjct: 815 IGAKLEFGDPYYGYLNLNTGEGFVVYYKSKENCVVDNIKVCSNDTGSGKFKCVCVTVRVP 874
Query: 846 RNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESV 905
RNP IGDKF+SRHGQKG+ S+LWP DMPF+ +GM PD++ NPH FPSRMTI ML+ES+
Sbjct: 875 RNPTIGDKFASRHGQKGILSRLWPAEDMPFTE-SGMMPDILFNPHGFPSRMTIGMLIESM 933
Query: 906 AAK 908
A K
Sbjct: 934 AGK 936
>sp|P28365|RPA2_EUPOC DNA-directed RNA polymerase I subunit RPA2 OS=Euplotes
octocarinatus GN=RPA2 PE=3 SV=2
Length = 1166
Score = 607 bits (1564), Expect = e-172, Method: Compositional matrix adjust.
Identities = 364/966 (37%), Positives = 530/966 (54%), Gaps = 105/966 (10%)
Query: 13 RELVRHHIESFDYMLDEGLSEMFDH----------------------------------- 37
+ + RHHI+SFD+ + L+ +H
Sbjct: 17 KNIARHHIDSFDFAMSTCLNRACEHMLPFDYIVPEESASCGFKKLTLWYDSFELGQPSLG 76
Query: 38 -------------CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCH 84
CRQ K++YT L A + ++ D V + G P M + + C+
Sbjct: 77 EIDYDSHILYPSECRQRKMTYTIPLFATIFKKFDD--EMVDNFKVKLGDIPTMGRKKFCN 134
Query: 85 LQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTD 144
L+G ++L E+ E GGYFI+NG E+V R +I+PK+N+P++ RS F +R + +TD
Sbjct: 135 LKGLTKKELAKRGEDMLEFGGYFIVNGNEKVIRMLIVPKRNFPIAFKRSKFLERGKDFTD 194
Query: 145 KAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNH 204
V +RCVR D ++ T+ L YL +GSV L Q +E+L+P+ ++LKAL + D +I+
Sbjct: 195 YGVQMRCVRDDFTAQTITLTYLSDGSVSLRLIYQKQEFLIPIILILKALKNCTDRQIYER 254
Query: 205 LTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQS 264
+ KG +S+RV+ ILA +DL++ Q IG F+ V+ G+ S
Sbjct: 255 IV----------KGNFNQRQISDRVEAILAVGKDLNIYDSDQSKALIGSRFRIVLAGITS 304
Query: 265 E-SYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILL 323
E S + + +I +H + KF+ LI M+ KL++ V + DN DS+ Q++LL
Sbjct: 305 ETSDIDAGDLFLSKHICIHTDSYEAKFDTLILMIDKLYASVANEVELDNLDSVAMQDVLL 364
Query: 324 PGHLITIYLKEKLEDWLRKG-KKLIQDEIENNGKKFDFFNLANIKKVMEKNPS-KQIGTS 381
GHL L EKL D L + + E++ + FD ++ + N IG
Sbjct: 365 GGHLYLQILSEKLFDCLHINLRARLNKELKRHN--FDPMKFRDVLTNQKINCGIGLIGKR 422
Query: 382 IETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKL 441
+E L TG L ++T LDL Q +G+ + ++LN +RF+S FR++HRG FA +TTSVRKL
Sbjct: 423 MENFLATGNLISRTNLDLMQTSGFCIIGDKLNNIRFLSHFRSIHRGQYFAEQKTTSVRKL 482
Query: 442 LPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGM 501
LPESWGF+CPVHTPDG PCGLLNH++ +C + + +I F +L +GM
Sbjct: 483 LPESWGFICPVHTPDGAPCGLLNHISMSCVPIGSEEKQIDIDKFRN-------ILGELGM 535
Query: 502 IPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAAS---VIPDDLEV 558
L + V+ DG +G + E V LR LK + + IP LE+
Sbjct: 536 NSISSDLCLNYHTGYYPVIFDGIHLGYVEKDIGESFVEGLRYLKCTQSQPDYAIPRTLEI 595
Query: 559 GYVPLS---LGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPD 615
++P S +PG++L ++P +F RPV+N+ IE I P EQ+ + I C D
Sbjct: 596 AFIPFSGYSRNLQWPGIFLASTPARFTRPVKNLHYNC-----IEWISPLEQMNLSIACTD 650
Query: 616 GGDGGRRNAFP-ATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQAL 674
+ P TH+E+ P +LS+VA++ ++++NQSPRNMYQCQMAKQTMG
Sbjct: 651 ------EDITPETTHQELDPINILSIVASVGVFAEYNQSPRNMYQCQMAKQTMGTPYHNH 704
Query: 675 KFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSS 734
+FR D K+Y L P PIV+T T + I+EYP+GTNA+VAV++YTGYD+EDAMI+NKSS
Sbjct: 705 QFRTDNKIYRLLFPHRPIVKTRTQVDFDIEEYPSGTNAVVAVISYTGYDLEDAMIINKSS 764
Query: 735 VDRGMCHGQIYQTETIDLSDDGNKVDRGQK-----LFRRNKDAKSLHSV----IDSDGLP 785
+RG HG +Y++ T DL++ ++ RG K F N K + ID DGLP
Sbjct: 765 YERGFGHGVVYKSYTHDLNESNSQSTRGIKSSVRYKFLNNVSQKDKSKIKLENIDPDGLP 824
Query: 786 YVGQMIHPGEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAV---DMKNSKNLPQKANIRF 842
+G + G+P I+D + + K SE ++ V V D KN NL IR+
Sbjct: 825 KIGSQLTKGKPELCIFDTLKRGAKLSKFKDSEKARIETVRVCGNDDKNPDNLSIGYTIRY 884
Query: 843 RHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLL 902
+R P+IGDKFSSRHGQKGV S LWP +DMPF+ G+ PDLIINPHAFPSRMT+ ML+
Sbjct: 885 --SRIPVIGDKFSSRHGQKGVLSVLWPQVDMPFTE-NGITPDLIINPHAFPSRMTMGMLI 941
Query: 903 ESVAAK 908
+S+AAK
Sbjct: 942 QSMAAK 947
>sp|P20028|RPA2_DROME DNA-directed RNA polymerase I subunit RPA2 OS=Drosophila
melanogaster GN=RpI135 PE=2 SV=2
Length = 1129
Score = 585 bits (1507), Expect = e-166, Method: Compositional matrix adjust.
Identities = 327/877 (37%), Positives = 511/877 (58%), Gaps = 59/877 (6%)
Query: 39 RQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKE 98
RQ +SY+G M V + G + G+ P+ML+++ C+L A +++V E
Sbjct: 103 RQLHVSYSG--MCSVRLGWSVNGVQKTPINMDLGEVPIMLRSKACNLGQATPEEMVKHGE 160
Query: 99 EAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSS 158
+E GG F++ G E++ R +I+ ++N+P+ + RSS++DR + ++D ++++ VR+D+SS
Sbjct: 161 HDSEWGGIFVIRGNEKIVRMLIMTRRNHPICVKRSSWKDRGQNFSDLGMLVQTVREDESS 220
Query: 159 VTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKG 218
++ ++YL NG+ + F + +PV ++LK L+D D EI+N L + Y+ ++
Sbjct: 221 LSNVVHYLNNGTAKFMFSHVKRLSYVPVCLILKCLMDYTDEEIYNRLV----QGYESDQY 276
Query: 219 AVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQ---PVIDGLQSESYYAVAETVI 275
V V+ +L EVQ+ ++ T QC IG F+ P + Q + V + ++
Sbjct: 277 YVSC------VQAMLREVQNENVYTHAQCKSFIGNLFRARFPEVPEWQPDD--DVTDFIL 328
Query: 276 RDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEK 335
R+ + +HL+ DKF L++FM+QKLF +N DS QE+LLPGHL YL E+
Sbjct: 329 RERVMIHLDTYEDKFQLIVFMIQKLFQCAQGKYKVENVDSAMMQEVLLPGHLYQKYLSER 388
Query: 336 LEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQT 395
+E W+ + ++ +Q ++ + A + + M + + +G +IE+ L TG +A++T
Sbjct: 389 VESWVSQVRRCLQKKLTSPDA---LVTSAVMTQCMRQ--AGGVGRAIESFLATGNIASRT 443
Query: 396 GLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTP 455
GL L Q +G + AE +N +R++S FRA+HRG+ F +RTT R+LLP++WGF+CPVHTP
Sbjct: 444 GLGLMQNSGLVIMAENINRMRYMSHFRAIHRGSYFTTMRTTEARQLLPDAWGFICPVHTP 503
Query: 456 DGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPA 515
DG PCGLLNH+T TC ++ +R K+ +I + LI +GM+P + +
Sbjct: 504 DGTPCGLLNHLTLTCEIS--------MRPDPKLVKAIPKHLIDMGMMPLSNR--RYLGEK 553
Query: 516 VLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLF 575
+ V LDG+ +G I SE EK+V LR K+ +P +E+G++P G +PGLY+
Sbjct: 554 LYVVFLDGKHLGHIHQSEAEKIVDELRYGKIFGT--LPQMMEIGFIPFKKNGQFPGLYIA 611
Query: 576 TSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFP--ATHEEIH 633
T P + +RPV N+ + +E IG EQ++MEI + +P TH E+
Sbjct: 612 TGPARMMRPVWNLKW-----KRVEYIGTLEQLYMEIAI------DAKEMYPDFTTHLELA 660
Query: 634 PTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIV 693
T +S +ANL P D+NQSPRNMYQCQM KQTMG +A KLY LQTP TP+
Sbjct: 661 KTHFMSNLANLIPMPDYNQSPRNMYQCQMGKQTMGTPCLNWPKQAANKLYRLQTPGTPLF 720
Query: 694 RTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLS 753
R Y +D++ GTNAIVAV++YTGYDMEDAMI+NK++ +RG +G IY+T+ + L
Sbjct: 721 RPVHYDNIQLDDFAMGTNAIVAVISYTGYDMEDAMIINKAAYERGFAYGSIYKTKFLTL- 779
Query: 754 DDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTNSWRTNSR 813
D+ F R+ L +D+DGLP+ G + G P +D +++
Sbjct: 780 ------DKKSSYFARHPHMPELIKHLDTDGLPHPGSKLSYGSPLYCYFDGEVATYKVVKM 833
Query: 814 KGSESVFVDYVAVDMKNSKNL-PQK-ANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDI 871
E V+ ++ S +L P+K I R R IGDKF+SR GQKG+CSQ +P
Sbjct: 834 DEKEDCIVE--SIRQLGSFDLSPKKMVAITLRVPRPATIGDKFASRAGQKGICSQKYPAE 891
Query: 872 DMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
D+PF+ +G+ PD++ NPH FPSRMTIAM++E++A K
Sbjct: 892 DLPFTE-SGLIPDIVFNPHGFPSRMTIAMMIETMAGK 927
>sp|P22276|RPC2_YEAST DNA-directed RNA polymerase III subunit RPC2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RET1 PE=1
SV=2
Length = 1149
Score = 285 bits (730), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 265/981 (27%), Positives = 428/981 (43%), Gaps = 147/981 (14%)
Query: 9 FEPLRELVRHHIESFDYMLDEGLSEMFD-------------------------------- 36
F ++ LV+ H++SF+Y +D L ++
Sbjct: 51 FLKVKGLVKQHLDSFNYFVDTDLKKIIKANQLILSDVDPEFYLKYVDIRVGKKSSSSTKD 110
Query: 37 ------HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADS 90
CR ++Y+ + D+E Y + ++ + G+ P+ML++ +C L AD
Sbjct: 111 YLTPPHECRLRDMTYSAPIYVDIE--YTRGRNIIMHKDVEIGRMPIMLRSNKCILYDADE 168
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
K+ L E + GGYFI+NG E+V +++ +Q ++ + D ++G +V
Sbjct: 169 SKMAKLNECPLDPGGYFIVNGTEKV---ILVQEQLSKNRIIVEA--DEKKGIVQASVTSS 223
Query: 151 C-VRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCY 209
RK ++ V K NG + L +E +P+ IVLKA +DLEI L C
Sbjct: 224 THERKSKTYVITK-----NGKIYLKHNSIAEE--IPIAIVLKACGILSDLEIM-QLVCGN 275
Query: 210 DEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPV----IDGLQSE 265
D Y+ + + L E L + T+ Q L++IG + + + LQ E
Sbjct: 276 DSSYQ------------DIFAVNLEESSKLDIYTQQQALEYIGAKVKTMRRQKLTILQ-E 322
Query: 266 SYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPG 325
A+A TVI ++ V D +K + M +++ + + + D+ D + N+ + L G
Sbjct: 323 GIEAIATTVIA-HLTVEALDFREKALYIAMMTRRVVMAMYNPKMIDDRDYVGNKRLELAG 381
Query: 326 HLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETM 385
LI++ ++ + + K I ++ + ++ L +I S I + +
Sbjct: 382 QLISLLFEDLFKKFNNDFKLSIDKVLKKPNRAMEYDALLSINV-----HSNNITSGLNRA 436
Query: 386 LKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLLPE 444
+ TG + + +RAG T RL+++ + + + F R S R L P
Sbjct: 437 ISTGNWSLKRFK--MERAGVTHVLSRLSYISALGMMTRI--SSQFEKSRKVSGPRALQPS 492
Query: 445 SWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPS 504
+G LC TP+GE CGL+ ++ + + D + L ++GV I
Sbjct: 493 QFGMLCTADTPEGEACGLVKNLALMTHITT---------DDEEEPIKKLCYVLGVEDIT- 542
Query: 505 LPKLVKSGPPAV-LSVLLDGRVVGVI--PSSEIEKVVAHLRRL-KVSAASVIPDDLEVGY 560
L+ S + V L+G ++G I P+ + + HLRR KVS +
Sbjct: 543 ---LIDSASLHLNYGVYLNGTLIGSIRFPTKFVTQF-RHLRRTGKVSE-----------F 587
Query: 561 VPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFE-----QVFMEIRCPD 615
+ + +++ T + RP+ +S ++I L + F+++ +
Sbjct: 588 ISIYSNSHQMAVHIATDGGRICRPLIIVSDGQSRVKDIHLRKLLDGELDFDDFLKLGLVE 647
Query: 616 GGDGGRRN----------AFPA-THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAK 664
D N P+ TH EI P +L VA L PY HNQSPRN YQC M K
Sbjct: 648 YLDVNEENDSYIALYEKDIVPSMTHLEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGK 707
Query: 665 QTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDM 724
Q +G R D LY + PQ P+V+T T D+ P G NA VAV++Y+GYD+
Sbjct: 708 QAIGAIAYNQFKRIDTLLYLMTYPQQPMVKTKTIELIDYDKLPAGQNATVAVMSYSGYDI 767
Query: 725 EDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDR--GQKLFRRNKDAKSLHSVIDSD 782
EDA++LNKSS+DRG + + T L N G N D H + D
Sbjct: 768 EDALVLNKSSIDRGFGRCETRRKTTTVLKRYANHTQDIIGGMRVDENGDPIWQHQSLGPD 827
Query: 783 GLPYVGQMIHPGEPYCSIYDKTTNSWRTNSR---------------KGSESVFVDYVAVD 827
GL VG + G+ Y + T ++ N +G E +D V
Sbjct: 828 GLGEVGMKVQSGQIYINKSVPTNSADAPNPNNVNVQTQYREAPVIYRGPEPSHIDQVM-- 885
Query: 828 MKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLII 887
M S N + R R P +GDKFSSRHGQKGVC + DMPF+ G+ PD+I+
Sbjct: 886 MSVSDNDQALIKVLLRQNRRPELGDKFSSRHGQKGVCGIIVKQEDMPFND-QGIVPDIIM 944
Query: 888 NPHAFPSRMTIAMLLESVAAK 908
NPH FPSRMT+ ++E ++ K
Sbjct: 945 NPHGFPSRMTVGKMIELISGK 965
>sp|Q10233|RPC2_SCHPO DNA-directed RNA polymerase III subunit RPC2 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rpc2 PE=2 SV=1
Length = 1165
Score = 275 bits (704), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 259/922 (28%), Positives = 412/922 (44%), Gaps = 117/922 (12%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRER-FNFGQFPVMLKTRRCHLQGADSQKLVSL 96
CR ++Y + D+E+ G VVR R G+ PVML++ +C L G + ++ +L
Sbjct: 126 CRLRDLTYGANIYVDIEYT---RGKQVVRRRNVPIGRMPVMLRSNKCVLSGKNEMEMAAL 182
Query: 97 KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQ 156
E + GGYFI+ G E+V IL ++ + + ++ + RK +
Sbjct: 183 NECPLDPGGYFIVKGTEKV----ILVQEQLSKNRIIVEAEPKKGLWQASVTSSTHERKSK 238
Query: 157 SSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKE 216
+ V K NG + L + +P+ +VLKA+ +D EIF L + Y+
Sbjct: 239 TYVITK-----NGKLYLKHNSVADD--IPIVVVLKAMGLQSDQEIF-ELVAGAEASYQD- 289
Query: 217 KGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQ-PVIDGLQSESYYAVAETVI 275
+ +P + E K L++ T Q L++IG + G + A V+
Sbjct: 290 ---LFAPSIEECAK--------LNIYTAQQALEYIGARVKVNRRAGANRLPPHEEALEVL 338
Query: 276 RDYIFVHLNDNNDKFN-----LLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITI 330
+ H+N N +F + I + L ++VD V D D + N+ + L G L+ +
Sbjct: 339 AAVVLAHINVFNLEFRPKAVYIGIMARRVLMAMVDPLQVDDR-DYVGNKRLELAGQLLAL 397
Query: 331 YLKEKLEDWLRKGKKLIQDEIENNGKK------FDFFNLANIKKVMEKNPSKQIGTSIET 384
ED +K ++ I+ KK FD +N + S I +
Sbjct: 398 LF----EDLFKKFNSDLKLNIDKVLKKPHRTQEFDAYNQLTVH-------SDHITQGMVR 446
Query: 385 MLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLLP 443
L TG + + +RAG T RL+++ + + + F R S R L
Sbjct: 447 ALSTGNWSLKRFK--MERAGVTHVLSRLSYISALGMMTRIT--SQFEKTRKVSGPRSLQA 502
Query: 444 ESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIP 503
+G LC TP+GE CGL+ ++ + + + I+ + V+ G
Sbjct: 503 SQFGMLCTSDTPEGEACGLVKNLALMTHITTDEEEEPIIKLAYAFGIEDIHVISG----- 557
Query: 504 SLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPL 563
+L G V L+G ++G+ S VA R+L+ S + P ++ +
Sbjct: 558 --RELHSHG---TYLVYLNGAILGI--SRYPSLFVASFRKLRRSG-KISP------FIGI 603
Query: 564 SLGGAYPGLYLFTSPPKFVRP---VRNISLPSEESQNIELIGP----FEQVFME-----I 611
+ +++ T + RP V+N LP ES++I L+ FE + +
Sbjct: 604 FINTHQRAVFISTDGGRICRPLIIVQN-GLPKVESKHIRLLKEGKWGFEDFLKQGLVEYV 662
Query: 612 RCPDGGDG----GRRNAFP-ATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQT 666
+ D R+ P TH EI P +L VA L PY HNQSPRN YQC M KQ
Sbjct: 663 DVNEENDSLISVYERDITPDTTHLEIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQA 722
Query: 667 MGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMED 726
+G R D LY + PQ P+V+T T G D+ P G NA VA+++Y+GYD+ED
Sbjct: 723 IGAIAYNQLQRIDTLLYLMVYPQQPMVKTKTIELIGYDKLPAGQNATVAIMSYSGYDIED 782
Query: 727 AMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAKSL---HSVIDSDG 783
A++LNKSS+DRG Q++ ++ + N +R+ + + H V++ DG
Sbjct: 783 ALVLNKSSIDRGFGRCQVFHKHSVIVRKYPNGTHDRIGDPQRDPETGEVVWKHGVVEDDG 842
Query: 784 LPYVGQMIHPGEPYC-----------SIYDKTTNSWRTNSR------KGSESVFVDYVAV 826
L VG + PG+ Y SI T + + + K E ++D V +
Sbjct: 843 LAGVGCRVQPGQIYVNKQTPTNALDNSITLGHTQTVESGYKATPMTYKAPEPGYIDKVML 902
Query: 827 DMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLI 886
+S K + R TR P +GDKFSSRHGQKGVC + DMPF+ G+ PD+I
Sbjct: 903 TTTDSDQTLIK--VLMRQTRRPELGDKFSSRHGQKGVCGVIVQQEDMPFND-QGICPDII 959
Query: 887 INPHAFPSRMTIAMLLESVAAK 908
+NPH FPSRMT+ ++E ++ K
Sbjct: 960 MNPHGFPSRMTVGKMIELLSGK 981
>sp|P59470|RPC2_MOUSE DNA-directed RNA polymerase III subunit RPC2 OS=Mus musculus
GN=Polr3b PE=2 SV=2
Length = 1133
Score = 269 bits (687), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 249/922 (27%), Positives = 404/922 (43%), Gaps = 122/922 (13%)
Query: 37 HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
CR ++Y+ + D+E Y ++R G+ P+ML++ C L G + L
Sbjct: 101 ECRLRDMTYSAPITVDIE--YTRGSQRIIRNALPIGRMPIMLRSSNCVLTGKTPAEFAKL 158
Query: 97 KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQ 156
E + GGYFI+ G+E+V +++ +Q +S R R+G +V
Sbjct: 159 NECPLDPGGYFIVKGVEKV---ILIQEQ---LSKNRIIVEADRKGAVGASV--------- 203
Query: 157 SSVTLKLYYLLNGSVRLG-FWLQGKEYL--LPVGIVLKALVDTNDLEIFNHLTCCYDEKY 213
+S T + N +V+ G F+L+ +P+ I+ KA+ +D EI +
Sbjct: 204 TSSTHEKKSRTNMAVKQGRFYLRHNTLSEDIPIVIIFKAMGVESDQEIVQMIGT------ 257
Query: 214 KKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHF--QPVIDGLQSESYYAVA 271
++ A P L E Q + T++Q L++IG Q + G ++ A
Sbjct: 258 EEHVMAAFGP--------SLEECQKAQIFTQMQALKYIGNKVRRQRMWGGGPKKTKIEEA 309
Query: 272 ETVIRDYIFVHLNDNNDKFN---LLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLI 328
++ I H+ F + ++ + L + D+ D N+ + L G L+
Sbjct: 310 RELLASTILTHVPVKEFNFRAKCIYTAVMVRRVILAQGDNKVDDRDYYGNKRLELAGQLL 369
Query: 329 TIYLKEKLEDWLRKGKKLIQDEI-ENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLK 387
++ ++ + + + KK+ I + +FD V++ QI + +
Sbjct: 370 SLLFEDLFKKFNSEMKKIADQVIPKQRAAQFD---------VVKHMRQDQITNGMVNAIS 420
Query: 388 TGRLATQT-GLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLLPES 445
TG + + +D R G T RL+++ + + + F R S R L P
Sbjct: 421 TGNWSLKRFKMD---RQGVTQVLSRLSYISALGMMTRI--SSQFEKTRKVSGPRSLQPSQ 475
Query: 446 WGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSL 505
WG LCP TP+GE CGL+ ++ + + + I+ + + +L G +
Sbjct: 476 WGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIIKLAGNLGVEDVNLLCGEEL---- 531
Query: 506 PKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSL 565
P V V L+G ++GVI + +K+V+ R ++ A I + +V +S
Sbjct: 532 ------SYPNVFLVFLNGNILGVI--RDHKKLVSTFRLMR--RAGYINE-----FVSIST 576
Query: 566 GGAYPGLYLFTSPPKFVRP--VRNISLPSEESQNIELIGP----FEQVFME--IRCPDGG 617
+Y+ + + RP + P+ ++++E + FE E + D
Sbjct: 577 NLTDRCVYISSDGGRLCRPYIIVKKQKPAVTNKHMEELAQGYRNFEDFLHESLVEYLDVN 636
Query: 618 DGGRRNAF--------PATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGF 669
+ N TH EI P +L V A L PY HNQSPRN YQC M KQ MG
Sbjct: 637 EENDCNIALYEHTINKDTTHLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGT 696
Query: 670 SVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMI 729
+ R D +Y L PQ P+V+T T ++ P G NA VAV++Y+GYD+EDA++
Sbjct: 697 IGYNQRNRIDTLMYLLAYPQKPMVKTKTIELIDFEKLPAGQNATVAVMSYSGYDIEDALV 756
Query: 730 LNKSSVDRGMCHGQIYQTETIDLSDDGNKV-DR--GQKLFRRNKDAKSLHSVIDSDG--- 783
LNK+S+DRG +Y+ L N+ D+ G L + H ++D+DG
Sbjct: 757 LNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDKVMGPMLDAATRKPIWRHEILDADGICS 816
Query: 784 ---------------LPYVGQMIHPGE--PYCSIYDKTTNSWRTNSRKGSESVFVDYVAV 826
+P V Q+ G P Y +++ + E V + A
Sbjct: 817 PGEKVENKQVLVNKSMPTVTQIPLEGSNVPQQPQYKDVPITYKGATDSYIEKVMISSNAE 876
Query: 827 DMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLI 886
D K L R TR P IGDKFSSRHGQKGVC + P DMPF +G+ PD+I
Sbjct: 877 DAFLIKML-------LRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCD-SGICPDII 928
Query: 887 INPHAFPSRMTIAMLLESVAAK 908
+NPH FPSRMT+ L+E +A K
Sbjct: 929 MNPHGFPSRMTVGKLIELLAGK 950
>sp|Q9NW08|RPC2_HUMAN DNA-directed RNA polymerase III subunit RPC2 OS=Homo sapiens
GN=POLR3B PE=1 SV=2
Length = 1133
Score = 268 bits (686), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 249/922 (27%), Positives = 404/922 (43%), Gaps = 122/922 (13%)
Query: 37 HCRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSL 96
CR ++Y+ + D+E Y ++R G+ P+ML++ C L G + L
Sbjct: 101 ECRLRDMTYSAPITVDIE--YTRGSQRIIRNALPIGRMPIMLRSSNCVLTGKTPAEFAKL 158
Query: 97 KEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQ 156
E + GGYFI+ G+E+V +++ +Q +S R R+G +V
Sbjct: 159 NECPLDPGGYFIVKGVEKV---ILIQEQ---LSKNRIIVEADRKGAVGASV--------- 203
Query: 157 SSVTLKLYYLLNGSVRLG-FWLQGKEYL--LPVGIVLKALVDTNDLEIFNHLTCCYDEKY 213
+S T + N +V+ G F+L+ +P+ I+ KA+ +D EI +
Sbjct: 204 TSSTHEKKSRTNMAVKQGRFYLRHNTLSEDIPIVIIFKAMGVESDQEIVQMIGT------ 257
Query: 214 KKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHF--QPVIDGLQSESYYAVA 271
++ A P L E Q + T++Q L++IG Q + G ++ A
Sbjct: 258 EEHVMAAFGP--------SLEECQKAQIFTQMQALKYIGNKVRRQRMWGGGPKKTKIEEA 309
Query: 272 ETVIRDYIFVHLNDNNDKFN---LLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLI 328
++ I H+ F + ++ + L + D+ D N+ + L G L+
Sbjct: 310 RELLASTILTHVPVKEFNFRAKCIYTAVMVRRVILAQGDNKVDDRDYYGNKRLELAGQLL 369
Query: 329 TIYLKEKLEDWLRKGKKLIQDEI-ENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLK 387
++ ++ + + + KK+ I + +FD V++ QI + +
Sbjct: 370 SLLFEDLFKKFNSEMKKIADQVIPKQRAAQFD---------VVKHMRQDQITNGMVNAIS 420
Query: 388 TGRLATQT-GLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS-VRKLLPES 445
TG + + +D R G T RL+++ + + + F R S R L P
Sbjct: 421 TGNWSLKRFKMD---RQGVTQVLSRLSYISALGMMTRI--SSQFEKTRKVSGPRSLQPSQ 475
Query: 446 WGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSL 505
WG LCP TP+GE CGL+ ++ + + + ++ S + + +L G +
Sbjct: 476 WGMLCPSDTPEGEACGLVKNLALMTHITTDMEDGPIVKLASNLGVEDVNLLCGEEL---- 531
Query: 506 PKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSL 565
P V V L+G ++GVI + +K+V R ++ A I + +V +S
Sbjct: 532 ------SYPNVFLVFLNGNILGVI--RDHKKLVNTFRLMR--RAGYINE-----FVSIST 576
Query: 566 GGAYPGLYLFTSPPKFVRP--VRNISLPSEESQNIELIGP----FEQVFME--IRCPDGG 617
+Y+ + + RP + P+ ++++E + FE E + D
Sbjct: 577 NLTDRCVYISSDGGRLCRPYIIVKKQKPAVTNKHMEELAQGYRNFEDFLHESLVEYLDVN 636
Query: 618 DGGRRNAF--------PATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGF 669
+ N TH EI P +L V A L PY HNQSPRN YQC M KQ MG
Sbjct: 637 EENDCNIALYEHTINKDTTHLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGT 696
Query: 670 SVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMI 729
+ R D +Y L PQ P+V+T T ++ P G NA VAV++Y+GYD+EDA++
Sbjct: 697 IGYNQRNRIDTLMYLLAYPQKPMVKTKTIELIEFEKLPAGQNATVAVMSYSGYDIEDALV 756
Query: 730 LNKSSVDRGMCHGQIYQTETIDLSDDGNKV-DR--GQKLFRRNKDAKSLHSVIDSDG--- 783
LNK+S+DRG +Y+ L N+ D+ G L + H ++D+DG
Sbjct: 757 LNKASLDRGFGRCLVYKNAKCTLKRYTNQTFDKVMGPMLDAATRKPIWRHEILDADGICS 816
Query: 784 ---------------LPYVGQMIHPGE--PYCSIYDKTTNSWRTNSRKGSESVFVDYVAV 826
+P V Q+ G P Y +++ + E V + A
Sbjct: 817 PGEKVENKQVLVNKSMPTVTQIPLEGSNVPQQPQYKDVPITYKGATDSYIEKVMISSNAE 876
Query: 827 DMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLI 886
D K L R TR P IGDKFSSRHGQKGVC + P DMPF +G+ PD+I
Sbjct: 877 DAFLIKML-------LRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCD-SGICPDII 928
Query: 887 INPHAFPSRMTIAMLLESVAAK 908
+NPH FPSRMT+ L+E +A K
Sbjct: 929 MNPHGFPSRMTVGKLIELLAGK 950
>sp|P25167|RPC2_DROME DNA-directed RNA polymerase III subunit RPC2 OS=Drosophila
melanogaster GN=RpIII128 PE=2 SV=2
Length = 1137
Score = 261 bits (666), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 254/929 (27%), Positives = 404/929 (43%), Gaps = 140/929 (15%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR +Y+ + D+E Y + R G+ P+ML+ C L G +L L
Sbjct: 110 CRLRDTTYSAPITVDIE--YTRGTQRIKRNNLLIGRMPLMLRCSNCALTGKSEFELSKLN 167
Query: 98 EEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRC----VR 153
E + GGYF++ G E+V +++ +Q M+ F V++C
Sbjct: 168 ECPLDPGGYFVVRGQEKV---ILIQEQLSWNKMLTEDFNG----------VVQCQVTSST 214
Query: 154 KDQSSVTLKL-----YYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCC 208
++ S TL L YYL + S+ +P+ ++ KAL +D EI + +
Sbjct: 215 HEKKSRTLVLSKHGKYYLKHNSMTDD---------IPIVVIFKALGVVSDQEIQSLIGI- 264
Query: 209 YDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIG-----EHFQPVIDGLQ 263
D K + GA L + +L + T+ + L+++G + FQ
Sbjct: 265 -DSKSQNRFGAS------------LIDAYNLKVFTQQRALEYMGSKLVVKRFQSATTKTP 311
Query: 264 SESYYAVAETVIRDYIFVHLNDNNDKFNLLI------FMLQKLFSLVDHTSVSDNPDSLQ 317
SE + T I ++ V D FNL + M++++ + ++ D+ D
Sbjct: 312 SEEARELLLTTILAHVPV------DNFNLQMKAIYVSMMVRRVMAAELDKTLFDDRDYYG 365
Query: 318 NQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQ 377
N+ + L G L+++ ED ++ ++ + N K +K + + Q
Sbjct: 366 NKRLELAGSLLSMMF----EDLFKRMNWELKTIADKNIPKVKAAQFDVVKHMR----AAQ 417
Query: 378 IGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS 437
I +E+ + +G + +RAG T RL+++ + V+ + F R S
Sbjct: 418 ITAGLESAISSGNWTIKRFK--MERAGVTQVLSRLSYISALGMMTRVN--SQFEKTRKVS 473
Query: 438 -VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
R L P WG LCP TP+GE CGL+ ++ + + + R I+
Sbjct: 474 GPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTEVEERP---------VMIVAFN 524
Query: 497 IGVGMIPSLPKLVKSGP---PAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIP 553
GV I + V P P V V ++G V+G+ + + +V +LR ++
Sbjct: 525 AGVEDI----REVSGNPINNPNVFLVFINGNVLGLTLNHK--HLVRNLRYMRRKG----- 573
Query: 554 DDLEVG-YVPLSLGGAYPGLYLFTSPPKFVRP---VRNISLPSEESQNIEL---IGPFEQ 606
+G YV + +Y+ T + RP V N ++ EL I F+
Sbjct: 574 ---RMGSYVSVHTSYTQRCIYIHTDGGRLCRPYVIVENRRPLVKQHHLDELNRGIRKFDD 630
Query: 607 VFMEIRCPDGGDGGRRNAFPA----------THEEIHPTGMLSVVANLTPYSDHNQSPRN 656
++ ++F A TH EI P +L V A L PY HNQSPRN
Sbjct: 631 FLLDGLIEYLDVNEENDSFIAWNEDQIEDRTTHLEIEPFTLLGVCAGLVPYPHHNQSPRN 690
Query: 657 MYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAV 716
YQC M KQ MG K R D +Y+L P P+V++ T D+ P G NA VAV
Sbjct: 691 TYQCAMGKQAMGMIGYNQKNRIDSLMYNLVYPHAPMVKSKTIELTNFDKLPAGQNATVAV 750
Query: 717 LAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKV-DRGQKLFRRNKDAKSL 775
++Y+GYD+EDA+ILNK+S+DRG +Y+ + N+ DR + K +
Sbjct: 751 MSYSGYDIEDALILNKASIDRGYGRCLVYKNSKCTVKRYANQTFDRIMGPMKDALTNKVI 810
Query: 776 --HSVIDSDGLPYVGQ-------MIHPGEPYCSIYD-------KTTNSWRTNSRKGSESV 819
H V+D+DG+ G+ MI+ P + + + + S KG E
Sbjct: 811 FKHDVLDTDGIVAPGEQVQNKQIMINKEMPAVTSMNPLQGQSAQVPYTAVPISYKGPEPS 870
Query: 820 FVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVT 879
+++ V V ++ K I R TR P IGDKFSSRHGQKGV + DMPF+
Sbjct: 871 YIERVMVSANAEEDFLIK--ILLRQTRIPEIGDKFSSRHGQKGVTGLIVEQEDMPFNDF- 927
Query: 880 GMRPDLIINPHAFPSRMTIAMLLESVAAK 908
G+ PD+I+NPH FPSRMT+ LE + K
Sbjct: 928 GICPDMIMNPHGFPSRMTVGKTLELLGGK 956
>sp|Q8CFI7|RPB2_MOUSE DNA-directed RNA polymerase II subunit RPB2 OS=Mus musculus
GN=Polr2b PE=2 SV=2
Length = 1174
Score = 241 bits (614), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 244/931 (26%), Positives = 400/931 (42%), Gaps = 107/931 (11%)
Query: 34 MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVR---ERFNFGQFPVMLKTRRCHLQGADS 90
M + R ++Y+ L D+ + G ++ ++ G+ P+ML++ C L G
Sbjct: 109 MPNEARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTD 168
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
+ L L E + GGYFI+NG E+V +I ++ ++ + +D + YT +
Sbjct: 169 RDLCELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFAKKDSKYAYTGECR--S 223
Query: 151 CVRKD-QSSVTLKLYYLLNGSV---------RLGFWLQGKEYLLPVGIVLKALVDTNDLE 200
C+ + + T+ + L G R+ L + +P+ IV +AL +D +
Sbjct: 224 CLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRD 283
Query: 201 IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
I H+ +++ P + E VK L E + + L IG +
Sbjct: 284 ILEHIIYDFED-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGS--RGAKP 328
Query: 261 GLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
G+ E A+ V++ + H+ ++ K L +M+ +L D+ D
Sbjct: 329 GVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 388
Query: 317 QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
N+ + L G L+ + ++ L++ + Q I + GK F+ LA IK ++
Sbjct: 389 GNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFI-DRGKDFNL-ELA-IK-------TR 438
Query: 377 QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
I ++ L TG Q Q RAG + RL F +S R ++ G +
Sbjct: 439 IISDGLKYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRLNSPIGRDG-KLA 496
Query: 437 SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
R+L WG +CP TP+G GL+ ++ ++ + IL L
Sbjct: 497 KPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYIS-----------VGSQPSPILEFL 545
Query: 497 IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAAS 550
M +L ++ + + ++G VG+ + E+++ LR+L+ VS S
Sbjct: 546 EEWSM-ENLEEISPAAIADATKIFVNGCWVGI--HKDPEQLMNTLRKLRRQMDIIVSEVS 602
Query: 551 VIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN------------I 598
+I D E + G L K + R+I E N +
Sbjct: 603 MIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVV 662
Query: 599 ELIGPFEQ--VFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRN 656
E I E+ V + + D + TH EIHP+ +L V A++ P+ DHNQSPRN
Sbjct: 663 EYIDTLEEETVMLAMTPDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRN 722
Query: 657 MYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAV 716
YQ M KQ MG + R D + L PQ P+V T + E P G N+IVA+
Sbjct: 723 TYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAI 782
Query: 717 LAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDA---- 772
+YTGY+ ED++I+N+S+VDRG Y++ S G D+ + + ++
Sbjct: 783 ASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKG--FDQEEVFEKPTRETCQGM 840
Query: 773 -KSLHSVIDSDGLPYVGQMIHPGE----PYCSIYDKTTNSWRTNSR----------KGSE 817
+++ +D DGL G + + ++ + TN R + SE
Sbjct: 841 RHAIYEKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRYTKRDCSTFLRTSE 900
Query: 818 SVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSG 877
+ VD V V + + IR R R P IGDKF+SRHGQKG C + DMPF+
Sbjct: 901 TGIVDQVMVTLNQEGY--KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFT- 957
Query: 878 VTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
G+ PD+IINPHA PSRMTI L+E + K
Sbjct: 958 CEGITPDIIINPHAIPSRMTIGHLIECLQGK 988
>sp|P30876|RPB2_HUMAN DNA-directed RNA polymerase II subunit RPB2 OS=Homo sapiens
GN=POLR2B PE=1 SV=1
Length = 1174
Score = 241 bits (614), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 244/931 (26%), Positives = 399/931 (42%), Gaps = 107/931 (11%)
Query: 34 MFDHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFN---FGQFPVMLKTRRCHLQGADS 90
M + R ++Y+ L D+ + G ++ + G+ P+ML++ C L G
Sbjct: 109 MPNEARLRNLTYSAPLYVDITKTVIKEGEEQLQTQHQKTFIGKIPIMLRSTYCLLNGLTD 168
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
+ L L E + GGYFI+NG E+V +I ++ ++ + +D + YT +
Sbjct: 169 RDLCELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFAKKDSKYAYTGECR--S 223
Query: 151 CVRKD-QSSVTLKLYYLLNGSV---------RLGFWLQGKEYLLPVGIVLKALVDTNDLE 200
C+ + + T+ + L G R+ L + +P+ IV +AL +D +
Sbjct: 224 CLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIVATLPYIKQEVPIIIVFRALGFVSDRD 283
Query: 201 IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
I H+ +++ P + E VK L E + + L IG +
Sbjct: 284 ILEHIIYDFED-----------PEMMEMVKPSLDEA--FVIQEQNVALNFIGS--RGAKP 328
Query: 261 GLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNPDSL 316
G+ E A+ V++ + H+ ++ K L +M+ +L D+ D
Sbjct: 329 GVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHY 388
Query: 317 QNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSK 376
N+ + L G L+ + ++ L++ + Q I + GK F+ LA IK ++
Sbjct: 389 GNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFI-DRGKDFNL-ELA-IK-------TR 438
Query: 377 QIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT 436
I ++ L TG Q Q RAG + RL F +S R ++ G +
Sbjct: 439 IISDGLKYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRLNSPIGRDG-KLA 496
Query: 437 SVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVL 496
R+L WG +CP TP+G GL+ ++ ++ + IL L
Sbjct: 497 KPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYIS-----------VGSQPSPILEFL 545
Query: 497 IGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAAS 550
M +L ++ + + ++G VG+ + E+++ LR+L+ VS S
Sbjct: 546 EEWSM-ENLEEISPAAIADATKIFVNGCWVGI--HKDPEQLMNTLRKLRRQMDIIVSEVS 602
Query: 551 VIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN------------I 598
+I D E + G L K + R+I E N +
Sbjct: 603 MIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREYNNYSWQDLVASGVV 662
Query: 599 ELIGPFEQ--VFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRN 656
E I E+ V + + D + TH EIHP+ +L V A++ P+ DHNQSPRN
Sbjct: 663 EYIDTLEEETVMLAMTPDDLQEKEVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSPRN 722
Query: 657 MYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAV 716
YQ M KQ MG + R D + L PQ P+V T + E P G N+IVA+
Sbjct: 723 TYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIVAI 782
Query: 717 LAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDA---- 772
+YTGY+ ED++I+N+S+VDRG Y++ S G D+ + + ++
Sbjct: 783 ASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKG--FDQEEVFEKPTRETCQGM 840
Query: 773 -KSLHSVIDSDGLPYVGQMIHPGE----PYCSIYDKTTNSWRTNSR----------KGSE 817
+++ +D DGL G + + ++ + TN R + SE
Sbjct: 841 RHAIYDKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNRRYTKRDCSTFLRTSE 900
Query: 818 SVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSG 877
+ VD V V + + IR R R P IGDKF+SRHGQKG C + DMPF+
Sbjct: 901 TGIVDQVMVTLNQEGY--KFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFT- 957
Query: 878 VTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
G+ PD+IINPHA PSRMTI L+E + K
Sbjct: 958 CEGITPDIIINPHAIPSRMTIGHLIECLQGK 988
>sp|Q8SR75|RPB2_ENCCU DNA-directed RNA polymerase II subunit RPB2 OS=Encephalitozoon
cuniculi (strain GB-M1) GN=RPB2 PE=3 SV=1
Length = 1141
Score = 240 bits (613), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 246/929 (26%), Positives = 403/929 (43%), Gaps = 120/929 (12%)
Query: 36 DHCRQAKISYTGKLMADVEFQYLDAGSPVVRERFN---FGQFPVMLKTRRCHLQGADSQK 92
+ R ++Y L DV + L V + +++ FG PVML++ C L G +
Sbjct: 93 NEARIRDLTYASPLFIDVTKETLSELGVVDKHKYSRVPFGSLPVMLRSSYCVLYGLGDKD 152
Query: 93 LVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCV 152
L+ L E + GGYFI+NG E+V I+ ++ + V + + YT A IR V
Sbjct: 153 LIDLGECPYDQGGYFIVNGSEKV----IVAQERMASNTVYVFKKAQPATYTHYAE-IRSV 207
Query: 153 ----RKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCC 208
++ S++++KL G +R+ L ++ +P+ ++ +AL +D EI +H+
Sbjct: 208 PEKSSRNPSTLSMKLCRS-PGVIRVSLPLVKQD--VPLFVLYRALGFLSDKEIIDHILYE 264
Query: 209 YDE------KYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGL 262
DE K E+G V VQD ++ L +IG+ P+ G
Sbjct: 265 DDEEMFELLKESIEEGTV---------------VQDQNVA-----LDYIGKRSAPI--GT 302
Query: 263 QSESYYAVAETVIRDYIFVHLNDN----NDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQN 318
E +A+ ++ + H+ K + +++Q+L + D+ D
Sbjct: 303 PQEKRIVMAKDLLAKEVLPHIGTQEFCETKKAYFIGYIVQRLLLVALGRRNPDDRDHYGK 362
Query: 319 QEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQI 378
+ + L G L+ + + + +Q IEN + FN+A K + I
Sbjct: 363 KRMDLSGPLLASLFRTLFKKLCVDTTRHMQKCIENGRE----FNIALGLK------ASII 412
Query: 379 GTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSV 438
L TG Q +Q RAG R NF+ +S R V+ G + +
Sbjct: 413 TQGFRYALATGNWGDQAKA-MQTRAGVAQVLNRYNFVSTLSHLRRVNTPIEKEG-KLAAP 470
Query: 439 RKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIG 498
R+L WG +CP TP+G+ CGL+ +++ + S S G + +F L
Sbjct: 471 RQLHNTHWGMVCPAETPEGQACGLVKNLSLMAYI-SVGSSSGPLVEF----------LEE 519
Query: 499 VGMIPSLPKLVKSGPPAVLSVLLDGRVVGV--IPSSEIEKVVAHLRRLKVSAASVIPDDL 556
G + SL ++ S A + ++G VG+ P I+ + R L++ I D+
Sbjct: 520 CG-VESLEEISTSQLDAATKIFVNGVWVGIHSDPVGLIKSLKLLRRSLEMDKEVSIVRDI 578
Query: 557 EVGYVPLSLGGAYPGL-YLFTSPPKFV---RPVRNISLPSEESQNIELIGPFEQVFMEIR 612
+ + P L K V +R + + N+ G E F+++
Sbjct: 579 REKEIRVQSDAGRPCRPLLVVKDNKLVITAEDIRKLKRGEIKWDNLVTSGFIE--FLDVE 636
Query: 613 -------------CPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQ 659
D + TH EIHP +L + A+ P+ DHNQSPRN YQ
Sbjct: 637 EEEMSMIAMNTKILADESRNSSDVSVSYTHCEIHPALILGICASTIPFPDHNQSPRNTYQ 696
Query: 660 CQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAY 719
M KQ MG R D L PQ P+V T + E P+G NA+VA+ Y
Sbjct: 697 SAMGKQAMGIYATNFLLRMDTLSNILFYPQKPLVTTKSMEYLRFKELPSGQNALVAIACY 756
Query: 720 TGYDMEDAMILNKSSVDRGMCHGQIYQTETID-------LSDDGNKVDRGQKLFRRNKDA 772
+GY+ ED++I+N+S++DRG+ Y+T T ++++ K RG L +N +
Sbjct: 757 SGYNQEDSIIMNQSAIDRGLFRSFFYRTYTDQESMSRPGVNEEFCKPSRGAVLRMKNLN- 815
Query: 773 KSLHSVIDSDGL-----------PYVGQMIHPGEPYCSIYDKTTNSWRTNSR--KGSESV 819
++ +D DGL +G++ +P S + ++ +S + +E+
Sbjct: 816 ---YNKLDDDGLISPGTRVTGDDVLIGKITPILDPERSTKEAPVYVYKDSSTAMRRTETG 872
Query: 820 FVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVT 879
VD V V K+ + ++ R R P +GDKF+SRH QKG DMPF+
Sbjct: 873 IVDTVIVTNKDGYKF---SKVKVRSGRIPQMGDKFASRHAQKGTIGITLRQEDMPFTS-E 928
Query: 880 GMRPDLIINPHAFPSRMTIAMLLESVAAK 908
G+ PD+IINPHA PSRMTI L+E + K
Sbjct: 929 GIVPDIIINPHAIPSRMTIGHLIECLLGK 957
>sp|Q10578|RPB2_CAEEL DNA-directed RNA polymerase II subunit RPB2 OS=Caenorhabditis
elegans GN=rpb-2 PE=2 SV=2
Length = 1193
Score = 238 bits (606), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 243/933 (26%), Positives = 393/933 (42%), Gaps = 112/933 (12%)
Query: 34 MFDHCRQAKISYTGKLMADVE--FQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQ 91
M + R ++Y L D+ D+ + V ++ G+ PVML++ C L +
Sbjct: 116 MPNEARLRNLTYASPLYVDITKVVTRDDSATEKVYDKVFVGKVPVMLRSSYCMLSNMTDR 175
Query: 92 KLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRC 151
L L E + GGYF++NG E+V +I ++ ++ S +D + Y K C
Sbjct: 176 DLTELNECPLDPGGYFVINGSEKV---LIAQEKMATNTVYVFSMKDGK--YAFKTECRSC 230
Query: 152 VRKD-QSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLEI 201
+ + + T+ + L G G+ + +P+ IV +AL +D +I
Sbjct: 231 LENSSRPTSTMWVNMLARGGGGGKKTAMGQRIIGILPYIKQEIPIMIVFRALGFVSDRDI 290
Query: 202 FNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDG 261
H+ YD P + E VK L E + + L IG + G
Sbjct: 291 LGHII--YD---------FNDPEMMEMVKPSLDEA--FVIQEQNVALNFIGA--RGAKPG 335
Query: 262 LQSESYYAVAETVIRDYIFVHL----NDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQ 317
+ E A +++ + H+ + K + +M+ +L D+ D +
Sbjct: 336 VTREQRIKYAREILQKELLPHVGVSEHCETKKAFFIGYMVHRLLLAALGRRELDDRDHIG 395
Query: 318 NQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQ 377
N+ + L G L+ + + L++ + Q I N D F L K +
Sbjct: 396 NKRLDLAGPLLAFLFRSLFRNLLKEMRMTAQKYINKN----DDFALDVCVK------TST 445
Query: 378 IGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS 437
I + L TG Q Q RAG + RL + +S R + G +
Sbjct: 446 ITRGLTYSLATGNWGDQKKAH-QSRAGVSQVLNRLTYTATLSHLRRANSPIGREG-KLAK 503
Query: 438 VRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLI 497
R+L WG +CP TP+G+ GL+ ++ Y S G++ + IL L
Sbjct: 504 PRQLHNTQWGMVCPAETPEGQAVGLVKNLALMA-----YISVGSLPE------PILEFLE 552
Query: 498 GVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VSAASV 551
M +L ++ S + ++G VG+ E ++++ L++L+ VS S+
Sbjct: 553 EWSM-ENLEEVSPSAIADATKIFVNGAWVGI--HREPDQLMTTLKKLRRQMDIIVSEVSM 609
Query: 552 IPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQN-------------- 597
+ D + + G L K R+I E +
Sbjct: 610 VRDIRDREIRIYTDAGRVCRPLLIVENQKLALKKRHIDQLKEAADEANKYTWSDLVGGGV 669
Query: 598 IELIGPFEQ--VFMEIRCPDGGDGGRRNAFPATHEEIHPTGMLSVVANLTPYSDHNQSPR 655
+ELI E+ + + D GG + TH EIHP +L V A++ P+ DHNQSPR
Sbjct: 670 VELIDSMEEETSMIAMMPEDLRSGGYCDTH--THCEIHPAMILGVCASIIPFPDHNQSPR 727
Query: 656 NMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVA 715
N YQ M KQ MG R D + L PQ P+V T + +E P G NAIVA
Sbjct: 728 NTYQSAMGKQAMGVYTTNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFNELPAGINAIVA 787
Query: 716 VLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETIDLSDDGNKVDRGQKLFRRNKDAK-- 773
+L+Y+GY+ ED++I+N S++DRG+ Y++ ++ N + ++L + K
Sbjct: 788 ILSYSGYNQEDSVIMNNSAIDRGLFRSVFYRSYR---DNEANLDNANEELIEKPTREKCS 844
Query: 774 ----SLHSVIDSDGLPYVGQMIHPGEPYCS-------IYDKTTNSWRTNSR-------KG 815
SL+ +D DG+ G + + I D S + + +
Sbjct: 845 GMRHSLYDKLDEDGIISPGMRVSGDDVIIGKTVALPDIDDDLDASGKKYPKRDASTFLRS 904
Query: 816 SESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPF 875
SE+ VD V + + + N + IR R R P IGDKF+SRHGQKG ++ DMPF
Sbjct: 905 SETGIVDQVMLSLNSDGN--KFVKIRMRSVRLPQIGDKFASRHGQKGTMGIMYRQEDMPF 962
Query: 876 SGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
+ G+ PD+IINPHA PSRMTI L+E + K
Sbjct: 963 TA-EGLTPDIIINPHAVPSRMTIGHLIECLQGK 994
>sp|P11513|RPOB_SULAC DNA-directed RNA polymerase subunit B OS=Sulfolobus acidocaldarius
(strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 /
NCIMB 11770) GN=rpoB PE=3 SV=2
Length = 1126
Score = 234 bits (596), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 228/900 (25%), Positives = 393/900 (43%), Gaps = 129/900 (14%)
Query: 61 GSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVI 120
G P+ G P+MLK+ KL+ + E+ + GGYFI+NG E+V I
Sbjct: 107 GEPI---EIYIGDLPIMLKSVADPTSNLPIDKLIEIGEDPKDPGGYFIVNGSEKV----I 159
Query: 121 LPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFW-LQG 179
+ +++ + V + T A V + V ++ L + ++++ F + G
Sbjct: 160 IAQEDLATNRVLVDYGKSGSNITHVAKVTSSAAGYRVQVMIE--RLKDSTIQISFATVPG 217
Query: 180 KEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDL 239
+ +P I+++AL D +I D + + E ++ + Q
Sbjct: 218 R---IPFAIIMRALGFVTDRDIV--YAVSLDPQIQNE--------------LLPSLEQAS 258
Query: 240 SLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLN----DNNDKFNLLIF 295
S+T+ + L IG V G + E+ AE VI Y HL D K L
Sbjct: 259 SITSAEEALDFIGNR---VAIGQKRENRIQKAEQVIDKYFLPHLGTSPEDRKKKGYYLAS 315
Query: 296 MLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQ--DEIEN 353
+ K+ L D+ D N+ + L G L T + + ++ K L+ ++ +
Sbjct: 316 AVNKILELYLGRREPDDKDHYANKRVRLAGDLFTSLFRVAFKAFV---KDLVYQLEKSKV 372
Query: 354 NGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLN 413
G++ L + E+ R A TG + R G + +R N
Sbjct: 373 RGRRLSLTALVRADIITERI----------------RHALATGNWVGGRTGVSQLLDRTN 416
Query: 414 FLRFISFFRAVHRGASFA-GLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRV 472
+L +S R V +S A G R L WG +CP TP+G GL+ ++ +V
Sbjct: 417 WLSMLSHLRRVV--SSLARGQPNFEARDLHGTQWGRMCPFETPEGPNSGLVKNLALLAQV 474
Query: 473 ASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPP---------AVLSVLLDG 523
+ + + + RV +G++ S+ +++ + V L+G
Sbjct: 475 SVGINE-----------SVVERVAYELGVV-SVEDVIRRISEQNEDVEKYMSWSKVYLNG 522
Query: 524 RVVGVIP-SSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFV 582
R++G E+ K + RR + D++ V Y+ +++ +
Sbjct: 523 RLLGYYEDGKELAKKIRESRR-----QGKLSDEVNVAYIATDYLNE---VHINCDAGRVR 574
Query: 583 RP--VRNISLPSEESQNIELIGPFEQVFME------IRCPDGGDGGRRNAFPA------- 627
RP + N P ++++I+ + E F + I D + NA+ A
Sbjct: 575 RPLIIVNNGTPLVDTEDIKKLKNGEITFDDLVKQGKIEFIDAEE--EENAYVALNPQDLT 632
Query: 628 ---THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYH 684
TH EI P+ +L ++A++ PY +HNQSPRN YQ MAKQ++G + R D + +
Sbjct: 633 PDHTHLEIWPSAILGIIASIIPYPEHNQSPRNTYQSAMAKQSLGLYASNYQIRTDTRAHL 692
Query: 685 LQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHG-- 742
L PQ P+V+T G ++ P G NAI+A+++YTGY+MED++I+NKSS++RGM
Sbjct: 693 LHYPQMPLVQTRMLGVIGYNDRPAGANAILAIMSYTGYNMEDSIIMNKSSIERGMYRSTF 752
Query: 743 -QIYQTETID----------LSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMI 791
++Y TE + + G K +G+ +R +D + ++ G + +
Sbjct: 753 FRLYSTEEVKYPGGQEDKIVTPEAGVKGYKGKDYYRLLEDNGVVSPEVEVKGGDVLIGKV 812
Query: 792 HPGEPYCSIYDKTTNSWRTNSR---KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNP 848
P + + + ++ + E+ VD V + N + +R R R P
Sbjct: 813 SPPRFLQEFKELSPEQAKRDTSIVTRHGENGIVDLVLITETLEGN--KLVKVRVRDLRIP 870
Query: 849 IIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
IGDKF++RHGQKGV L +DMP++ G+ PD+I+NPHA PSRMTI ++E++ K
Sbjct: 871 EIGDKFATRHGQKGVVGILIDQVDMPYTA-KGIVPDIILNPHALPSRMTIGQIMEAIGGK 929
>sp|P31814|RPOB_THECE DNA-directed RNA polymerase subunit B OS=Thermococcus celer GN=rpoB
PE=3 SV=1
Length = 1122
Score = 233 bits (595), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 249/992 (25%), Positives = 413/992 (41%), Gaps = 184/992 (18%)
Query: 15 LVRHHIESFDYMLDEGLSEMFDHCRQAK-------ISYTGKLMADVEFQY---------- 57
LVR H++S++ +D G+ E+ D K + + + + EFQ
Sbjct: 29 LVRQHLDSYNAFIDHGMQEVIDEFGGVKPDIPDFEVKFGKVRLGEPEFQEAQGQRKPLYP 88
Query: 58 LDA-------GSPVVRE-------------RFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
+DA +P+ E G+ P+MLK++ C L G ++L+ L
Sbjct: 89 MDARIRNLTYSAPIYLELIPVVNGVSQEAVEVRIGELPIMLKSKACRLYGLSDEELIKLG 148
Query: 98 EEAAEMGGYFILNGLERVFRSV-------ILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
E+ + GGYFI+NG ERV S+ L +++ + + + R GY +A++
Sbjct: 149 EDPKDPGGYFIVNGSERVIVSIEDLAPNKTLVERDERQNRIIAKCFSYRHGY--RALITV 206
Query: 151 CVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIV--LKALVDTNDLEIFNHLTCC 208
RKD LY L R PV V ++AL +D EI ++
Sbjct: 207 ERRKDGI-----LYVKLPNVPR------------PVKFVYVMRALGLLSDREIVEAVS-- 247
Query: 209 YDEKYKKEKGAVGSPLVSERVKIILAEVQDLS-LTTRLQCLQHIGEHFQPVIDGLQSESY 267
P + ++ ++D S +TT+ + L +IG+ P G E
Sbjct: 248 ------------DDPRIQH---VLFDNLEDASDVTTQEEALDYIGKLSLP---GQPKEYR 289
Query: 268 YAVAETVIRDYIFVHLN----DNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILL 323
A+ +I + + H+ D K L M ++ L D+ D N+ + L
Sbjct: 290 LRRAQNIIDNNLLPHMGVEEKDRKAKAYYLGMMALRVLELSLGLRGEDDKDHYANKRLKL 349
Query: 324 PGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIE 383
G L+ + ++ + + + G+++ F N+ V + IE
Sbjct: 350 AGDLLMDLFRVAFGQLVKDMQYQMTKTYQRKGERYTFENIQRF--VRNSIRPDVLSERIE 407
Query: 384 TMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLP 443
L TG R G + +R N++ +S R V S + R L
Sbjct: 408 HALATGSWPGG-------RTGVSQLLDRTNYISTLSHLRRVTSPLSREQPHFEA-RDLHG 459
Query: 444 ESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIP 503
WG +CP TP+G CGL+ ++ ++ + +R++ L +G++P
Sbjct: 460 THWGRICPTETPEGPNCGLVKNLALMSQITTGVPEE-EVREY----------LERLGVVP 508
Query: 504 SLPKLVKSGP-PAVLSVLLDGRVVGVIPSSE--IEKVVAHLRRLKVS----AASVIPDDL 556
+ + P P + + L+G +VG + E + ++ R K+S A +D+
Sbjct: 509 ----IEERRPNPDLWRLYLNGVLVGTVEDGEGFVNRIRTDRRSGKISDIINVALYQDEDV 564
Query: 557 EVGYVPLSLGGA-YPGLYLFTSPPKFVRP-VRNISLPSEESQNIELIGPFEQVFMEIRCP 614
+ YV G P + + PK R V I S ++ +G E + E
Sbjct: 565 KEIYVNSDDGRVRRPLIIVENGRPKLTREHVEAIKNGSLTWSDLVKMGVIEYLDAE---- 620
Query: 615 DGGDGGRRNAFPA----------THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAK 664
NA A TH E+ P +L + A+L PY +HN PRN Y MAK
Sbjct: 621 -----EEENALVATWPWEVTEEHTHLELMPAAILGIPASLVPYPEHNARPRNTYGAGMAK 675
Query: 665 QTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDM 724
Q++G + R D + + + PQ P+V + G +E P G N +VAVL+Y GY+M
Sbjct: 676 QSLGLGWANFRIRVDTRGHLMHYPQVPLVNSRIMKAVGFEERPAGQNFVVAVLSYAGYNM 735
Query: 725 EDAMILNKSSVDRGMCHGQIYQT-ETIDLSDDGNKVDR------------GQKLFRRNKD 771
EDA+I+NK+S++RG+ ++T E + G + DR G++ +R
Sbjct: 736 EDAIIMNKASIERGLARSTFFRTYEAEEKRYLGGQTDRFEIPDPTIQGYLGERYYRH--- 792
Query: 772 AKSLHSVIDSDGLPY-----------VGQMIHPG--EPYCSIYDKTTNSWRTNSR--KGS 816
+D DG+ + VG+ P E + R S + S
Sbjct: 793 -------LDEDGIIFPESKVNGKDVLVGRTSPPRFLEEQSGLGGIILQERRETSLTVRPS 845
Query: 817 ESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFS 876
E+ VD V + + + + + R R P GDKF+SRHGQKGV + P DMP++
Sbjct: 846 ETGVVDKVII--TETGDGTKLVKVTTRDLRIPEFGDKFASRHGQKGVIGLIVPQEDMPWT 903
Query: 877 GVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
+G+ PDLI+NPH PSRMT+ L+E++ K
Sbjct: 904 E-SGIVPDLIVNPHGIPSRMTVGQLIEAIGGK 934
>sp|P08266|RPB2_DROME DNA-directed RNA polymerase II subunit RPB2 OS=Drosophila
melanogaster GN=RpII140 PE=2 SV=2
Length = 1176
Score = 232 bits (592), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 252/954 (26%), Positives = 406/954 (42%), Gaps = 152/954 (15%)
Query: 34 MFDHCRQAKISYTGKLMADV-EFQYLDAGSPV--VRERFNFGQFPVMLKTRRCHLQGADS 90
M + R ++Y+ L D+ + + ++ PV ++ G+ P+ML++ C L
Sbjct: 110 MPNEARLRNLTYSAPLYVDITKTKNVEGLDPVETQHQKTFIGKIPIMLRSTYCLLSQLTD 169
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
+ L L E + GGYFI+NG E+V +I ++ ++ S +D + Y K +
Sbjct: 170 RDLTELNECPLDPGGYFIINGSEKV---LIAQEKMATNTVYVFSMKDGK--YAFKTEIRS 224
Query: 151 CVR-KDQSSVTLKLYYLLNGSVRLGFWLQGKEYL---------LPVGIVLKALVDTNDLE 200
C+ + + TL + + GS + G+ + +P+ IV +AL D +
Sbjct: 225 CLEHSSRPTSTLWVNMMARGSQNIKKSAIGQRIIAILPYIKQEIPIMIVFRALGFVADRD 284
Query: 201 IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAE---VQDLSLTTRLQCLQHIGEHFQP 257
I H+ +D+ P + E VK L E VQ+ ++ L IG +
Sbjct: 285 ILEHIIYDFDD-----------PEMMEMVKPSLDEAFVVQEQNVA-----LNFIGA--RG 326
Query: 258 VIDGLQSESYYAVAETVIRDYIFVHLNDNN----DKFNLLIFMLQKLFSLVDHTSVSDNP 313
G+ + A+ +++ + H+ ++ K L +M+ +L D+
Sbjct: 327 ARPGVTKDKRIKYAKEILQKEMLPHVGVSDFCETKKAYFLGYMVHRLLLASLGRRELDDR 386
Query: 314 DSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKN 373
D N+ + L G L+ + ++ +++ + Q I+ GK F N++ ++ N
Sbjct: 387 DHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRMYTQKFIDR-GKDF------NLELAIKTN 439
Query: 374 PSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGL 433
I + L TG Q Q RAG + RL F +S R V+ G
Sbjct: 440 I---ITDGLRYSLATGNWGDQKKAH-QARAGVSQVLNRLTFASTLSHLRRVNSPIGRDG- 494
Query: 434 RTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSIL 493
+ R+L WG LCP TP+G GL+ ++ ++ + IL
Sbjct: 495 KLAKPRQLHNTLWGMLCPAETPEGAAVGLVKNLALMAYIS-----------VGSQPSPIL 543
Query: 494 RVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLK------VS 547
L M +L ++ S + ++G VG+ + E+++A LR+L+ VS
Sbjct: 544 EFLEEWSM-ENLEEIAPSAIADATKIFVNGCWVGI--HRDPEQLMATLRKLRRQMDIIVS 600
Query: 548 AASVIPD--DLEVGYVPLSLGGAYPGLYLFTSPPKFVRPV------------RNISLPSE 593
S+I D D E+ ++T + RP+ ++ + E
Sbjct: 601 EVSMIRDIRDREI--------------RIYTDAGRICRPLLIVENGSLLLKKTHVEMLKE 646
Query: 594 ESQN------------IELIGPFEQ-VFMEIRCPDGGDGGRRNAFPAT--HEEIHPTGML 638
N +E I E+ M P + A+ T H EIHP +L
Sbjct: 647 RDYNNYSWQVLVASGVVEYIDTLEEETVMIAMSPYDLKQDKDYAYCTTYTHCEIHPAMIL 706
Query: 639 SVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTY 698
V A++ P+ DHNQSPRN YQ M KQ MG + R D + L P P+V T +
Sbjct: 707 GVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPMKPLVTTRSM 766
Query: 699 TKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT-------ETID 751
E P G N+IVA+L YTGY+ ED++ILN S+V+RG Y++ D
Sbjct: 767 EYLRFRELPAGINSIVAILCYTGYNQEDSVILNASAVERGFFRSVFYRSYKDSENKRVGD 826
Query: 752 LSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKT------- 804
++ K RG RN L D DG+ G + + + KT
Sbjct: 827 QEENFEKPHRGTCQGMRNAHYDKL----DDDGIIAPGIRVSGDD---VVIGKTITLPEND 879
Query: 805 ----TNSWRTNSR------KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKF 854
+N+ R + R + SE+ VD V + + NS+ + IR R R P IGDKF
Sbjct: 880 DELDSNTKRFSKRDASTFLRNSETGIVDQVMLTL-NSEGY-KFCKIRVRSVRIPQIGDKF 937
Query: 855 SSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
+SRHGQKG C + DM F+ G+ PD+IINPHA PSRMTI L+E + K
Sbjct: 938 ASRHGQKGTCGIQYRQEDMAFT-CEGLAPDIIINPHAIPSRMTIGHLIECLQGK 990
>sp|Q197F1|RPB2_IIV3 Probable DNA-directed RNA polymerase II subunit RPB2 homolog
OS=Invertebrate iridescent virus 3 GN=IIV3-009R PE=3
SV=1
Length = 1140
Score = 215 bits (547), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 248/1009 (24%), Positives = 407/1009 (40%), Gaps = 182/1009 (18%)
Query: 7 ADFEPLRELVRHHIESFDYMLDEGLSEMFDH----------------------------- 37
AD+ LV+H IE+F++ + +GL + ++
Sbjct: 24 ADYFKTNGLVKHQIETFNHFISKGLKTIINNESSIKYQSHDNYSLKFTNIYVEYPSIIDD 83
Query: 38 -----------CRQAKISYTGKLMADV--EFQYLDAGSPVVRERFN--FGQFPVMLKTRR 82
R +SYTG + +V + + P + E++ + P+ML +
Sbjct: 84 DRTIRDLYPQEARNKDLSYTGNVCVNVIEMVENKEGKPPQISEQYRVPIAKIPIMLGSDV 143
Query: 83 CHLQGADSQKLVSLKEEA------AEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFR 136
CHL K L+ E A+ GGYFI+NG ERV S + N P+ V+S+
Sbjct: 144 CHLS-----KYTPLENEQINGHSQADQGGYFIINGKERVLISQVRKAYNKPVCFVKST-- 196
Query: 137 DRREGYTDKAVVIRCVRKD-------QSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIV 189
+ K V+ C + +SV +K+ + + + L+ K +PVGIV
Sbjct: 197 ------SQKEDVLICEMRSMCEETFHSTSVQVKM---IKNKIMVSLKLKRKLIDIPVGIV 247
Query: 190 LKALVDTNDL------EIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQD----- 238
K L D +FN +Y+K A+ + + E I D
Sbjct: 248 FKCLGYNPDQMGSKFRSLFN-----LPPEYEKYIDAIKNDCLEEFAYGIAVSAADGDNSD 302
Query: 239 ----LSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDY-------IFVHL---N 284
+HI + F+ + + + A I D +F HL +
Sbjct: 303 SGGESGGEEEADQEEHIVKVFRNMSTSVDKDGGMAATGITIEDVQKSLDMDLFPHLGITS 362
Query: 285 DNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGK 344
+ +LL FM++K + DN D ++ + G L + + +K +
Sbjct: 363 TRKQRVDLLAFMVKKYLLTLTRKIPVDNRDDYNHKRVETAGELYSFLFRL----LYKKFQ 418
Query: 345 KLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAG 404
K +I N +K D N + I T I +G Q ++
Sbjct: 419 KTCITQIRN--RKPDISNFLR---------TSGITTGILYSFSSGYWGVQRNTYIRTGVS 467
Query: 405 YTVQAERLNFLRFISFFRAVHRGASFAG--LRTTSVRKLLPESWGFLCPVHTPDGEPCGL 462
V +++ L S R V S G +T+ +R++ P S +CPV TP+G+ G
Sbjct: 468 QVVNP-KVSLLANYSSLRRVVIPESKDGKEAKTSEIRQIHPSSSFLVCPVETPEGKGVGT 526
Query: 463 LNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLD 522
+ +M C+V + + I+ + G+ +K P L +L++
Sbjct: 527 VLNMAVFCQVTTGIST-----------CEIMDQIDSFGVDLKCHCTIKD-PNNCLLLLIN 574
Query: 523 GRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFV 582
G G + V+ L L + S++ V +LG + +F+ +F+
Sbjct: 575 GSPYG----NGHANVIHRLNFLNDTNISIV--------VNRALGV----IEIFSDAGRFI 618
Query: 583 RPVRNIS---------LPS----EESQNIELIGPFE----QVFMEIRCPDGGDGGRRNAF 625
RP+ ++ +PS ++Q I I E + +E+R R N
Sbjct: 619 RPIFDLDKICNFEGEIVPSFKWFLDNQLIRYIDINEAAANSIAIELRDLSTNPNTRYNLM 678
Query: 626 PATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHL 685
E+ P GM +VA + P+ D QS RN + M KQ +GF V + + + L
Sbjct: 679 -----ELDPCGMFGIVAGIIPFPDRTQSARNCFYSSMVKQAIGF-VPCHNLKTETVSHTL 732
Query: 686 QTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIY 745
PQ P+V T+ ++EYP G NAIVA+ YTGY+ ED++ILNKSS+DRG+ Y
Sbjct: 733 NYPQKPLVTTSFAEYNQLNEYPNGINAIVAIACYTGYNQEDSIILNKSSIDRGLFGTITY 792
Query: 746 QTETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPY-CSIYDKT 804
T T +G +R + K + ++ DG+ + Q + G+ C + K
Sbjct: 793 NTFTAQEKKNGIIEERIEIPSNAIKIRDCNYGLVGPDGIVRLRQRVKKGDVLICKVTIKN 852
Query: 805 TNSWRTNSRKGSESVFVD-----YVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHG 859
N + + SV V YV + N + + + R P IGDKF S
Sbjct: 853 KNQ---DEKLVDSSVIVQHGEEGYVDRIVDNVIDGCRIVKVVIGQMRTPEIGDKFCSGMA 909
Query: 860 QKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
QKG C ++P DMPF+ +GM PD+IINP+ PSRMTI ++ +V K
Sbjct: 910 QKGTCGMIFPQEDMPFTA-SGMTPDIIINPNCIPSRMTINQIISTVMGK 957
>sp|Q54IZ9|RPC2_DICDI DNA-directed RNA polymerase III subunit rpc2 OS=Dictyostelium
discoideum GN=polr3b PE=3 SV=1
Length = 1608
Score = 193 bits (491), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 116/299 (38%), Positives = 163/299 (54%), Gaps = 22/299 (7%)
Query: 627 ATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQ 686
TH EI P ML VA L PY HNQSPRN YQC M KQ +G R D LY L
Sbjct: 1134 TTHLEIEPFTMLGCVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQLTRIDTLLYLLV 1193
Query: 687 TPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQ 746
Q P+ +T T + P G NA VAV++Y+GYD+EDA+++NK+S+DRG + +
Sbjct: 1194 HTQRPLCQTRTIDLLNWYKLPAGHNATVAVMSYSGYDIEDALVMNKASLDRGFGRCIVLK 1253
Query: 747 TETIDLSDDGNKVDRGQKLF--RRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIY--- 801
+ + GN D ++F N + + ++DSDG+ G++ G+ + Y
Sbjct: 1254 KQVTSIKKHGN--DTSDRIFPPTPNDLRQPKYGLLDSDGIAKPGELAQKGQILVNKYSPL 1311
Query: 802 ---DKTTN-------SWRTN--SRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPI 849
D T N +++++ K F+D V + + + L K + R TR P
Sbjct: 1312 NTIDATPNPELIPDSAYKSSYMGYKYDNPAFIDKVLLTSGDDEQLLIK--MLMRSTRRPE 1369
Query: 850 IGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
+GDKFSSRHGQKGVC + DMPFS + G+ PD+I+NPH FPSRMTI ++E +A K
Sbjct: 1370 LGDKFSSRHGQKGVCGIIVKQEDMPFSDL-GICPDIIMNPHGFPSRMTIGKMIELLAGK 1427
Score = 79.7 bits (195), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 103/444 (23%), Positives = 177/444 (39%), Gaps = 73/444 (16%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLK 97
CR ++Y+ + ++E Y + + + G P+ML++ C L +++ +L
Sbjct: 115 CRLRDMTYSAPIFVNIE--YTRNKQIISKRDVHIGNIPIMLRSSNCVLSKKTPEQMAALG 172
Query: 98 EEAAEMGGYFILNGLERVF---------RSVI-LPKQNYPMSMVRSSFRDRREGYTDKAV 147
E + GGYFI+ G E+V R +I + + P + V SS +
Sbjct: 173 ECPMDPGGYFIVRGQEKVILNHEQLSKNRIIIEMDSKGLPSASVTSSTHE---------- 222
Query: 148 VIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTC 207
RK ++ VTLK N + L G++ +PV IVLK + D E+
Sbjct: 223 -----RKSRTGVTLK-----NEKLYLKHNTFGED--IPVAIVLKGMGVETDQEM------ 264
Query: 208 CYDEKYKKEKGAVGSPLVS-ERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID--GLQ- 263
VGS V + L E Q + T Q L ++G + G+Q
Sbjct: 265 ---------AQLVGSDDVFLNAITPSLEECQKCGVHTAAQALDYLGSRIKVFRRPYGVQN 315
Query: 264 ----SESYYAVAETVIRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQ 319
SE + V+ +++ V + K L M++++ S D+ D N+
Sbjct: 316 KKTKSEEARDILAGVVLNHVPVRRYNFRLKVIYLSLMIRRIIMASKDKSCLDDKDYYGNK 375
Query: 320 EILLPGHLITIYLKEKLEDWLRKGKKLIQDEI--ENNGKKFDFFNLANIKKVMEKNPSKQ 377
I L G LI++ ++ + + + KK + I N + D L + N
Sbjct: 376 RIELSGQLISLLFEDCFKKFQSELKKSVDQAIAKANRAENLDLPKLIRTDTIT--NGFTH 433
Query: 378 IGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTS 437
+S + LK R+ +R+G + RL+++ + + + F R +
Sbjct: 434 AISSGQWNLKRFRM---------ERSGVSQVLSRLSYISCMGMMTRIQ--SQFEKTRKVA 482
Query: 438 -VRKLLPESWGFLCPVHTPDGEPC 460
R L P WG LCP TP+GE C
Sbjct: 483 GPRSLQPSQWGMLCPSDTPEGEAC 506
>sp|Q9LV32|RPD2B_ARATH DNA-directed RNA polymerase D subunit 2b OS=Arabidopsis thaliana
GN=NRPD2b PE=2 SV=1
Length = 1119
Score = 189 bits (479), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 222/969 (22%), Positives = 406/969 (41%), Gaps = 141/969 (14%)
Query: 1 MARKKSADFEPLRELVRHHIESFDYMLDEGLSEMFDHCRQAKI--SYTGKLMADVEFQYL 58
+K + F L+ H + S+++ ++ GL +F+ + S+ D +++Y
Sbjct: 25 FCKKAATSFFEEFGLISHQLNSYNFFIEHGLQNVFESFGDILVEPSFDVIKKKDGDWRYA 84
Query: 59 DAGSPVV--RERFNFGQ--------------------FPVMLKTRRCHL--QGADSQKLV 94
+V ++F GQ PVM+K+ C +G ++ K
Sbjct: 85 TVFKKIVIKHDKFKTGQDEYVEKEILDVKKQDILIGSIPVMVKSVLCKTSEKGKENCKKG 144
Query: 95 SLKEEAAEMGGYFILNGLERVF--------RSVILPKQNYPMSMVRSSFRDR---REGYT 143
+ A + GGYF++ G E+VF + + + + +S + R+R R
Sbjct: 145 NC---AFDQGGYFVIKGAEKVFIAQEQMCTKRLWISNSPWTVSFRSETKRNRFIVRLSEN 201
Query: 144 DKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFN 203
+KA + + K L +Y+L +PV ++ AL ++D E +
Sbjct: 202 EKAEDYKIMEK-----VLTVYFLSTE--------------IPVWLLFFALGVSSDKEAMD 242
Query: 204 HLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDL-SLTTRLQCLQHIGEHFQPVIDGL 262
+ + + ++ + L+ A + + ++ +C G + ++
Sbjct: 243 LIA------FDGDDASITNSLI--------ASIHEADAVCEAFRC----GNNALTYVEHQ 284
Query: 263 QSESYYAVAETV---IRDYIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQ 319
+ + AE+V +R Y+F L K L +M++ L S +N DS +N+
Sbjct: 285 IKSTKFPPAESVDDCLRLYLFPCLQGLKKKARFLGYMVKCLLSAYAGKRKCENRDSFRNK 344
Query: 320 EILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIG 379
I L G L+ ++ L RK + +Q ++ +G ++K + + I
Sbjct: 345 RIELAGELLEREIRVHLAHARRKMTRAMQKQLSGDG---------DLKPIEHYLDASVIT 395
Query: 380 TSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVR 439
+ TG + +++ +G R N L+ + R + + G + R
Sbjct: 396 NGLNRAFSTGAW-SHPFRKMERVSGVVANLGRANPLQTLIDLRRTRQQVLYTG-KVGDAR 453
Query: 440 KLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGV 499
P WG +C + TPDGE CGL+ +M+ V++ + S++ +L
Sbjct: 454 HPHPSHWGRVCFLSTPDGENCGLVKNMSLLGLVST------------QGLESVVEMLFTC 501
Query: 500 GMIPSLPKLVKSGPPAVLSVLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVG 559
GM L + VLL+G VG+ SE V L+ + S +P ++E+
Sbjct: 502 GM-EELMNDTSTPLCGKHKVLLNGDWVGLCADSE--SFVGELKSRR--RQSELPLEMEI- 555
Query: 560 YVPLSLGGAYPGLYLFTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDG 619
+ +FT + +RP+ + + Q+ PF+ + + G
Sbjct: 556 ----KRDKDDNEVRIFTDAGRLLRPLLVVENLHKLKQDKPTQYPFKHLLDQGILELIGIE 611
Query: 620 GRRNAFPA-------------THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQM-AKQ 665
+ A TH E+ + +L V + P+++H+ R +YQ Q +Q
Sbjct: 612 EEEDCTTAWGIKQLLKEPKNYTHCELDLSFLLGVSCAIVPFANHDHGKRVLYQSQKHCQQ 671
Query: 666 TMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDME 725
+GFS R D L PQ P+ +T + G NAIVAV + GY+ E
Sbjct: 672 AIGFSSTNPNIRCDTLSQQLFYPQKPLFKTLASECLEKEVLFNGQNAIVAVNVHLGYNQE 731
Query: 726 DAMILNKSSVDRGMCHGQIYQTETIDL-SDDGNKVDRGQKLFRRNKDAKSLHSV--IDSD 782
D++++NK+S++RGM + ++ ++ + D K + +L + K + V ++ D
Sbjct: 732 DSIVMNKASLERGMFRSEQIRSYKAEVDTKDSEKRKKMDELVQFGKTYSKIGKVDSLEDD 791
Query: 783 GLPYVGQMIHPGEPYCSIYDKTTNSWRTNS--RKGSESVFVDYVAVDMKNS-KNLPQKAN 839
G P++G + G+ + + T S +S K +E V V + + KN A
Sbjct: 792 GFPFIGANMSTGDI---VIGRCTESGADHSIKLKHTERGIVQKVVLSSNDEGKNF---AA 845
Query: 840 IRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIA 899
+ R R+P +GDKFSS HGQKGV L + PF+ + G+ PD++INPHAFPSR T
Sbjct: 846 VSLRQVRSPCLGDKFSSMHGQKGVLGYLEEQQNFPFT-IQGIVPDIVINPHAFPSRQTPG 904
Query: 900 MLLESVAAK 908
LLE+ +K
Sbjct: 905 QLLEAALSK 913
>sp|P38420|RPB2_ARATH DNA-directed RNA polymerase II subunit RPB2 OS=Arabidopsis thaliana
GN=RPB135 PE=2 SV=2
Length = 1188
Score = 187 bits (476), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 119/303 (39%), Positives = 160/303 (52%), Gaps = 32/303 (10%)
Query: 628 THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
TH EIHP+ +L V A++ P+ DHNQSPRN YQ M KQ MG V +FR D Y L
Sbjct: 702 THCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYY 761
Query: 688 PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
PQ P+V T + P G NAIVA+ Y+GY+ ED++I+N+SS+DRG +++
Sbjct: 762 PQKPLVTTRAMEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRS 821
Query: 748 ETID-------LSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSI 800
+ + +D + DRG + R+ L D DGL G + GE I
Sbjct: 822 YRDEEKKMGTLVKEDFGRPDRGSTMGMRHGSYDKL----DDDGLAPPGTRV-SGEDV--I 874
Query: 801 YDKTT---------NSWRTNSR------KGSESVFVDYVAVDMKNSKNLPQKANIRFRHT 845
KTT S R R + SE+ VD V + N+ L + +R R
Sbjct: 875 IGKTTPISQDEAQGQSSRYTRRDHSISLRHSETGMVDQVLL-TTNADGL-RFVKVRVRSV 932
Query: 846 RNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESV 905
R P IGDKFSSRHGQKG + DMP++ + G+ PD+I+NPHA PSRMTI L+E +
Sbjct: 933 RIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT-IEGVTPDIIVNPHAIPSRMTIGQLIECI 991
Query: 906 AAK 908
K
Sbjct: 992 MGK 994
Score = 77.0 bits (188), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 99/453 (21%), Positives = 184/453 (40%), Gaps = 59/453 (13%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAG--SPVVRERFNF-----GQFPVMLKTRRCHLQGADS 90
R ++Y+ L DV + + G V E +F G+ P+ML++ C L
Sbjct: 115 ARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLFQNSE 174
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
+ L L E + GGYFI+NG E+ V++ ++ + V F+ R+ +R
Sbjct: 175 KDLTELGECPYDQGGYFIINGSEK----VLIAQEKMSTNHV-YVFKKRQPNKYAYVGEVR 229
Query: 151 CVRKDQSS--VTLKLYYLLNGSVRLGFWLQGKEYL----------LPVGIVLKALVDTND 198
+ ++Q+ T+ + L S + G +Y+ +P+ IV +AL D
Sbjct: 230 SMAENQNRPPSTMFVRMLARASAKGG---SSGQYIRCTLPYIRTEIPIIIVFRALGFVAD 286
Query: 199 LEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPV 258
+I H+ CYD + E ++ L E + +L L +IG+ V
Sbjct: 287 KDILEHI--CYD---------FADTQMMELLRPSLEEA--FVIQNQLVALDYIGKRGATV 333
Query: 259 IDGLQSESYYAVAETVIRDYIFVHL----NDNNDKFNLLIFMLQKLFSLVDHTSVSDNPD 314
G+ E A +++ + H+ + K +++ +L D+ D
Sbjct: 334 --GVTKEKRIKYARDILQKEMLPHVGIGEHCETKKAYYFGYIIHRLLLCALGRRPEDDRD 391
Query: 315 SLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNP 374
N+ + L G L+ + R + +Q + +NGK+ N++ ++
Sbjct: 392 HYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCV-DNGKE------VNLQFAIK--- 441
Query: 375 SKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLR 434
+K I + ++ L TG RAG + RL + +S R ++ G +
Sbjct: 442 AKTITSGLKYSLATGNWGQANAAG--TRAGVSQVLNRLTYASTLSHLRRLNSPIGREG-K 498
Query: 435 TTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMT 467
R+L WG +CP TP+G+ CGL+ ++
Sbjct: 499 LAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 531
>sp|Q42877|RPB2_SOLLC DNA-directed RNA polymerase II subunit RPB2 OS=Solanum lycopersicum
GN=RPB2 PE=2 SV=1
Length = 1191
Score = 185 bits (470), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 117/303 (38%), Positives = 158/303 (52%), Gaps = 32/303 (10%)
Query: 628 THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
TH EIHP+ +L V A++ P+ DHNQSPRN YQ M KQ MG V +FR D Y L
Sbjct: 701 THCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYY 760
Query: 688 PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
PQ P+V T + P G NAIVA+ Y+GY+ ED++I+N+SS+DRG +++
Sbjct: 761 PQKPLVTTRAMEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRS 820
Query: 748 ETID-------LSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSI 800
+ + +D + DR + R+ L D DGL G + GE I
Sbjct: 821 YRDEEKKMGTLVKEDFGRPDRASTMGMRHGSYDKL----DDDGLAPPGTRV-SGEDV--I 873
Query: 801 YDKT---------------TNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHT 845
KT T + S + SE+ VD V + N+ L + +R R
Sbjct: 874 IGKTTPISQDDAQGQASRYTRKDHSTSLRHSETGMVDQVLL-TTNADGL-RFVKVRVRSV 931
Query: 846 RNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESV 905
R P IGDKFSSRHGQKG + DMP++ V G+ PD+I+NPHA PSRMTI L+E +
Sbjct: 932 RIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT-VEGITPDIIVNPHAIPSRMTIGQLIECI 990
Query: 906 AAK 908
K
Sbjct: 991 MGK 993
Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 98/453 (21%), Positives = 180/453 (39%), Gaps = 59/453 (13%)
Query: 38 CRQAKISYTGKLMADVEFQYLDAG--SPVVRERFNF-----GQFPVMLKTRRCHLQGADS 90
R ++Y+ L DV + + G V E +F G+ P+ML++ C L
Sbjct: 114 ARLRNLTYSAPLYVDVTKRVIKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSE 173
Query: 91 QKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIR 150
+ L L E + GGYFI+NG E+V ++ ++ + V F+ R+ +R
Sbjct: 174 KDLTELGECPLDQGGYFIINGSEKV----LIAQEKMSTNHV-YVFKKRQPNKYAFVAEVR 228
Query: 151 CVRKDQSS--VTLKLYYLLNGSVRLGFWLQGKEYL----------LPVGIVLKALVDTND 198
+ Q+ T+ + L S + G +Y+ +P+ IV +AL D
Sbjct: 229 SMADTQNRPPSTMFVRMLSRTSAKGG---SSGQYIRATLPYIRTEIPIIIVFRALGFVAD 285
Query: 199 LEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPV 258
+I H+ CYD + E ++ L E + + L +IG+ V
Sbjct: 286 KDILEHI--CYD---------FNDTQMMELLRPSLEEA--FVIQNQQVALDYIGKRGATV 332
Query: 259 IDGLQSESYYAVAETVIRDYIFVHLN----DNNDKFNLLIFMLQKLFSLVDHTSVSDNPD 314
G+ E A+ +++ + H+ K +++ +L D+ D
Sbjct: 333 --GVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRAEDDRD 390
Query: 315 SLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNP 374
N+ + L G L+ + R + +Q + +NGK N++ ++
Sbjct: 391 HYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQKCV-DNGKD------VNLQFAIK--- 440
Query: 375 SKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLR 434
+K I + ++ L TG RAG + RL + +S R ++ G +
Sbjct: 441 AKTITSGLKYSLATGNWGQANAAGT--RAGVSQVLNRLTYASTLSHLRRLNSPIGREG-K 497
Query: 435 TTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMT 467
R+L WG +CP TP+G+ CGL+ ++
Sbjct: 498 LAKPRQLHNSQWGMMCPAETPEGQACGLVKNLA 530
>sp|P09845|RPOB1_METTW DNA-directed RNA polymerase subunit B' OS=Methanothermobacter
thermoautotrophicus (strain Winter) GN=rpoB1 PE=3 SV=2
Length = 604
Score = 184 bits (468), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 112/301 (37%), Positives = 166/301 (55%), Gaps = 25/301 (8%)
Query: 628 THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
TH EI P+ ML + A + P+++HN SPRN + M KQ +G R D + + L
Sbjct: 122 THLEIDPSTMLGICAGIIPFANHNSSPRNTMEAGMTKQALGLYASNYNLRTDTRAHLLHH 181
Query: 688 PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
PQ PIV+T G DE P+G N +VAV++Y GY+MEDA+ILNK+S++RG+ +++
Sbjct: 182 PQVPIVKTRIIDVTGYDERPSGQNFVVAVMSYEGYNMEDALILNKASLERGLARSSFFRS 241
Query: 748 -ETIDLSDDGNKVDR------GQKLFRRNKDAKSLHS--VID-----SDGLPYVGQMIHP 793
E + G + DR G + +R +D + L +I+ S G +G+ P
Sbjct: 242 YEATERRYPGGQEDRFEIPEKGVRGYRSERDYRHLDEDGIINPETEVSSGDVLIGKTSPP 301
Query: 794 G-----EPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNP 848
+ + ++ ++ + T R G E + VD AV + + + A IR R R P
Sbjct: 302 RFLEEIDEFGTVAERRRETSVT-VRHGEEGI-VD--AVLLTETVEGSRLAKIRVREQRQP 357
Query: 849 -IIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAA 907
IGDKF+SRHGQKGV + DMPF+ G+ PDLI+NPHA PSRM++ +LE +A
Sbjct: 358 EFIGDKFASRHGQKGVVGLIVSQEDMPFT-EDGVVPDLIVNPHAIPSRMSVGQVLEMLAG 416
Query: 908 K 908
K
Sbjct: 417 K 417
>sp|O27124|RPOB1_METTH DNA-directed RNA polymerase subunit B' OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=rpoB1 PE=3 SV=1
Length = 603
Score = 183 bits (465), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 110/300 (36%), Positives = 165/300 (55%), Gaps = 24/300 (8%)
Query: 628 THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
TH EI P+ ML + A + P+++HN SPRN + M KQ +G R D + + L
Sbjct: 122 THLEIDPSTMLGICAGIIPFANHNSSPRNTMEAGMTKQALGLYASNYDLRTDTRAHLLHH 181
Query: 688 PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
PQ PIV+T G DE P+G N +VAV++Y GY+MEDA+ILNK+S++RG+ +++
Sbjct: 182 PQVPIVKTRIIDVTGYDERPSGQNFVVAVMSYEGYNMEDALILNKASLERGLARSSFFRS 241
Query: 748 -ETIDLSDDGNKVDR------GQKLFRRNKDAKSLHS--VID-----SDGLPYVGQMIHP 793
E + G + DR G + +R D + L +I+ S G +G+ P
Sbjct: 242 YEAAERRYPGGQEDRFEIPEKGVRGYRSESDYRHLDEDGIINPEAEVSSGDVLIGKTSPP 301
Query: 794 G-----EPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNP 848
+ + ++ ++ + T R G + + VD AV + + + A IR R R P
Sbjct: 302 RFLEEIDEFGTVAERRRETSVT-VRHGEKGI-VD--AVLLTETVEGSRLAKIRVREQRQP 357
Query: 849 IIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
+GDKF+SRHGQKGV + DMPF+ G+ PDLI+NPHA PSRM++ +LE +A K
Sbjct: 358 ELGDKFASRHGQKGVVGLIVSQEDMPFT-EDGIVPDLIVNPHAIPSRMSVGQVLEMLAGK 416
>sp|O28392|RPOB1_ARCFU DNA-directed RNA polymerase subunit B' OS=Archaeoglobus fulgidus
(strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC
100126) GN=rpoB1 PE=4 SV=1
Length = 604
Score = 182 bits (463), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 109/307 (35%), Positives = 165/307 (53%), Gaps = 38/307 (12%)
Query: 628 THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
TH E+ P+ ++ + PY++HN SPRN M KQ++G L +R D + + +Q
Sbjct: 122 THLELDPSLIVGICTGSIPYAEHNASPRNTMGAAMIKQSLGIPYSNLAWRTDTRGHLMQH 181
Query: 688 PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
PQ PIV T+T + DE P G N +VAVL+Y GY++EDA+I+NK SV+RG+ Y+T
Sbjct: 182 PQVPIVTTDTQVEIKFDERPAGQNFVVAVLSYEGYNIEDALIMNKGSVERGLGRSFFYRT 241
Query: 748 -ETIDLSDDGNKVDR----GQKL--FRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSI 800
E+ ++ G + D+ G + FR ++ +D DGL + + P +
Sbjct: 242 YESEEMRYPGGQEDKFEIPGADISGFR----GAEAYAHLDEDGLIFPETEVGPDDVLIGR 297
Query: 801 YD-------------------KTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIR 841
+T+ + R+N + ++VF + S+ + A +R
Sbjct: 298 TSPPRFLEEPTELGISPQKRRETSVTMRSNEKGVVDAVF-------LMQSEGGSKLAKVR 350
Query: 842 FRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAML 901
R R P +GDKF+SRHGQKGV L P+ DMPF+ +G+ PDLIINPHA PSRMT+ +
Sbjct: 351 VRDLRIPELGDKFASRHGQKGVVGLLVPEEDMPFT-ESGIVPDLIINPHAIPSRMTVGHV 409
Query: 902 LESVAAK 908
LE + K
Sbjct: 410 LEMIGGK 416
>sp|Q02061|RPB2_SCHPO DNA-directed RNA polymerase II subunit RPB2 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rpb2 PE=1 SV=2
Length = 1210
Score = 180 bits (457), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 113/298 (37%), Positives = 157/298 (52%), Gaps = 20/298 (6%)
Query: 628 THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
TH EIHP +L ++A++ P+ DHNQSPRN YQ M KQ MG + + R D L
Sbjct: 728 THCEIHPAMILGILASIIPFPDHNQSPRNTYQSAMGKQAMGVYLTNYQVRMDTMANILYY 787
Query: 688 PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
PQ P+ T + E P G NAIVA+L Y+GY+ ED++I+N++S+DRG+ Y+T
Sbjct: 788 PQKPLATTRSMEYLKFRELPAGQNAIVAILCYSGYNQEDSIIMNQASIDRGLFRSIFYRT 847
Query: 748 ETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDS---DGLPYVGQ-------MIHPGEPY 797
T G V + R+ + H D DGL G +I P
Sbjct: 848 YTDQEKKIGMTVMEEFERPVRSTTLRMKHGTYDKLEDDGLIAPGTRVSGEDIIIGKTAPI 907
Query: 798 CSIYDKTTNSWRTNSR-------KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPII 850
+++ + +++ + +ES VD V V N + L + +R R TR P I
Sbjct: 908 PLDHEELGQRTQLHAKRDVSTPLRSTESGIVDQVMV-TTNQEGL-KFVKVRMRSTRIPQI 965
Query: 851 GDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
GDKF+SRHGQKG + DMPFS G+ PD+IINPHA PSRMT+A L+E +K
Sbjct: 966 GDKFASRHGQKGTIGMTYRHEDMPFSA-QGIVPDIIINPHAIPSRMTVAHLVECQLSK 1022
Score = 80.5 bits (197), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 119/527 (22%), Positives = 202/527 (38%), Gaps = 67/527 (12%)
Query: 71 FGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSM 130
G+ P+ML++ C L G +L L E + GGYFI+NG E+V I+ ++ ++
Sbjct: 152 IGKIPIMLRSTFCILNGVSDSELYDLNECPYDQGGYFIINGSEKV----IIAQERSAANI 207
Query: 131 VRSSFRDRREGYTDKAVVIRCVRKDQSSV--TLKLYYLLNGSVRLGFWLQGK-EYL---L 184
V+ F+ IR + S + ++++ + + G ++ Y+ +
Sbjct: 208 VQV-FKKAAPSPIAYVAEIRSALERGSRLISSMQIKLMARNTENSGQTIRATLPYIRSDI 266
Query: 185 PVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTR 244
P+ IV +AL D +I H+ CYD + + P + E I QD +
Sbjct: 267 PIVIVFRALGVVPDRDILEHI--CYDPN-DFQMLEMMKPCIEEAFVI-----QDKDI--- 315
Query: 245 LQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLND----NNDKFNLLIFMLQKL 300
L +IG+ G+ E A +++ + H+ K L +M+ ++
Sbjct: 316 --ALDYIGKRGSTT--GVTREKRLRYAHDILQKELLPHITTMEGFETRKAFFLGYMIHRM 371
Query: 301 FSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDF 360
D+ D + + L G L+ + R K +Q +E N +
Sbjct: 372 LLCALERREPDDRDHFGKKRLDLAGPLLASLFRMLFRKMTRDVYKYMQKCVETNRE---- 427
Query: 361 FNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISF 420
FNL K S I + L TG Q + R G + R F +S
Sbjct: 428 FNLTLAVK------SNIITNGLRYSLATGNWGDQKR-SMVNRVGVSQVLNRYTFASTLSH 480
Query: 421 FRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRG 480
R + G + R+L WG +CP TP+G+ CGL+ +++ V+ S
Sbjct: 481 LRRTNTPIGRDG-KLAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMSYVSVGSPS-- 537
Query: 481 NIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGV--IPSSEIEKVV 538
I+ L G+ +L S P V ++G +GV P+ E +
Sbjct: 538 ---------APIIEFLEEWGL-ETLEDYNPSASPNATKVFVNGVWLGVHRDPAHLTETLR 587
Query: 539 AHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPV 585
+ RRL +SA I D+ L LFT + RP+
Sbjct: 588 SLRRRLDISAEVSIVRDIR-----------EKELRLFTDAGRICRPL 623
>sp|Q9LK40|RPD2A_ARATH DNA-directed RNA polymerase D subunit 2a OS=Arabidopsis thaliana
GN=NRPD2a PE=1 SV=1
Length = 1172
Score = 179 bits (455), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 213/894 (23%), Positives = 383/894 (42%), Gaps = 123/894 (13%)
Query: 53 VEFQYLDAGSPVVRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKEEAA-EMGGYFILNG 111
VE + LD V ++ G PVM+K+ C + ++ K K + A + GGYF++ G
Sbjct: 159 VEKKILD----VKKQDILIGSIPVMVKSILC--KTSEKGKENCKKGDCAFDQGGYFVIKG 212
Query: 112 LERVF--------RSVILPKQNYPMSMVRSSFRDR---REGYTDKAVVIRCVRKDQSSVT 160
E+VF + + + + +S + R+R R +KA + R+++
Sbjct: 213 AEKVFIAQEQMCTKRLWISNSPWTVSFRSENKRNRFIVRLSENEKAEDYK--RREK---V 267
Query: 161 LKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAV 220
L +Y+L +PV ++ AL ++D E + + + + ++
Sbjct: 268 LTVYFLSTE--------------IPVWLLFFALGVSSDKEAMDLIA------FDGDDASI 307
Query: 221 GSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETV---IRD 277
+ L++ I +A+ ++ +C G + ++ + + AE+V +
Sbjct: 308 TNSLIAS---IHVAD----AVCEAFRC----GNNALTYVEQQIKSTKFPPAESVDECLHL 356
Query: 278 YIFVHLNDNNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLE 337
Y+F L K L +M++ L + +N DS +N+ I L G L+ ++ L
Sbjct: 357 YLFPGLQSLKKKARFLGYMVKCLLNSYAGKRKCENRDSFRNKRIELAGELLEREIRVHLA 416
Query: 338 DWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGL 397
RK + +Q + +G ++K + + I + TG +
Sbjct: 417 HARRKMTRAMQKHLSGDG---------DLKPIEHYLDASVITNGLSRAFSTGAW-SHPFR 466
Query: 398 DLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDG 457
+++ +G R N L+ + R + + G + R P WG +C + TPDG
Sbjct: 467 KMERVSGVVANLGRANPLQTLIDLRRTRQQVLYTG-KVGDARYPHPSHWGRVCFLSTPDG 525
Query: 458 EPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVL 517
E CGL+ +M+ V++ + S++ L GM +L+ +
Sbjct: 526 ENCGLVKNMSLLGLVST------------QSLESVVEKLFACGM----EELMDDTCTPLF 569
Query: 518 S---VLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYL 574
VLL+G VG+ SE VA L+ + S +P ++E+ + +
Sbjct: 570 GKHKVLLNGDWVGLCADSE--SFVAELKSRR--RQSELPREMEI-----KRDKDDNEVRI 620
Query: 575 FTSPPKFVRPVRNISLPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAFPA------- 627
FT + +RP+ + + Q PF+ + G + A
Sbjct: 621 FTDAGRLLRPLLVVENLQKLKQEKPSQYPFDHLLDHGILELIGIEEEEDCNTAWGIKQLL 680
Query: 628 ------THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQM-AKQTMGFSVQALKFRADQ 680
TH E+ + +L V + P+++H+ R +YQ Q +Q +GFS R D
Sbjct: 681 KEPKIYTHCELDLSFLLGVSCAVVPFANHDHGRRVLYQSQKHCQQAIGFSSTNPNIRCDT 740
Query: 681 KLYHLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMC 740
L PQ P+ +T + G NAIVAV + GY+ ED++++NK+S++RGM
Sbjct: 741 LSQQLFYPQKPLFKTLASECLKKEVLFNGQNAIVAVNVHLGYNQEDSIVMNKASLERGMF 800
Query: 741 HGQIYQTETIDL-SDDGNKVDRGQKLFRRNKDAKSLHSV--IDSDGLPYVGQMIHPGEPY 797
+ ++ ++ + D K + +L + K + V ++ DG P++G + G+
Sbjct: 801 RSEQIRSYKAEVDAKDSEKRKKMDELVQFGKTHSKIGKVDSLEDDGFPFIGANMSTGDI- 859
Query: 798 CSIYDKTTNSWRTNS--RKGSESVFVDYVAVDMKNS-KNLPQKANIRFRHTRNPIIGDKF 854
+ + T S +S K +E V V + + KN A + R R+P +GDKF
Sbjct: 860 --VIGRCTESGADHSIKLKHTERGIVQKVVLSSNDEGKNF---AAVSLRQVRSPCLGDKF 914
Query: 855 SSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
SS HGQKGV L + PF+ + G+ PD++INPHAFPSR T LLE+ +K
Sbjct: 915 SSMHGQKGVLGYLEEQQNFPFT-IQGIVPDIVINPHAFPSRQTPGQLLEAALSK 967
>sp|Q60181|RPOB1_METJA DNA-directed RNA polymerase subunit B' OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=rpoB1 PE=3 SV=1
Length = 636
Score = 179 bits (453), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 104/302 (34%), Positives = 159/302 (52%), Gaps = 28/302 (9%)
Query: 628 THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
TH EI P +L + A + PY +HN +PR M KQ++G + +K+R D + ++L
Sbjct: 127 THLEIDPLTILGIGAGVAPYPEHNSAPRITMAAAMGKQSLGIPMSNIKWRLDTRGHYLHY 186
Query: 688 PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
PQ PIVRT G D+ P G N +VA+++Y GY+MEDA++ NKS++DRG+ ++T
Sbjct: 187 PQVPIVRTKHQEILGFDKRPAGQNFVVAIMSYEGYNMEDAIVFNKSAIDRGLGRSTFFRT 246
Query: 748 -ETIDLSDDGNKVDRGQKLFR--RNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKT 804
+ + G ++DR + + R ++ + ++ DG+ V + G+ I KT
Sbjct: 247 YDACERRYPGGQMDRFEIPDKGVRGYRSEECYRYLEEDGIVAVESHVKGGD---VIVGKT 303
Query: 805 T--------------NSWRTNS----RKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTR 846
+ R +S R G E + + K L ++ R R
Sbjct: 304 SPPRFLEEHEITIQVKPQRRDSSVVVRHGEEGYIDKVILTETKEGNRL---VKVKVRDLR 360
Query: 847 NPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVA 906
P +GDKF+SRHGQKGV P D+PF+ +G+ PD+IINPHA PSRMT+ LLE +
Sbjct: 361 IPELGDKFASRHGQKGVMGLTVPQEDLPFT-ESGIVPDIIINPHAIPSRMTVGQLLEMLG 419
Query: 907 AK 908
K
Sbjct: 420 GK 421
>sp|P41557|RPOB1_METVS DNA-directed RNA polymerase subunit B' OS=Methanococcus vannielii
(strain SB / ATCC 35089 / DSM 1224) GN=rpoB1 PE=3 SV=2
Length = 611
Score = 177 bits (450), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 110/306 (35%), Positives = 163/306 (53%), Gaps = 28/306 (9%)
Query: 624 AFPATHEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLY 683
F TH EI P +L + A + PY +HN +PR M KQ++G + +K+R D + +
Sbjct: 119 TFENTHVEIDPLVILGIGAGVAPYPEHNSAPRITMAAAMGKQSLGIPMANIKWRMDTRGH 178
Query: 684 HLQTPQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQ 743
L PQ P+VRT G D+ P G N +VAV++Y GY+MEDA ++NK+S++RG+
Sbjct: 179 LLHYPQVPLVRTKHQEILGFDKRPAGQNFVVAVMSYEGYNMEDAFVINKASLERGLGRST 238
Query: 744 IYQT-ETIDLSDDGNKVDRGQKLFR--RNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSI 800
+++ E+ + G ++D+ + + R A+ + + DGL + + G+ I
Sbjct: 239 FFRSYESFEKRYPGGQLDKFEVPEKGVRGYRAEEAYRNLGDDGLIDLESEVRSGD---VI 295
Query: 801 YDKT--------------TNSWRTNS----RKGSESVFVDYVAVDMKNSKNLPQKANIRF 842
KT T S R ++ R G E V VD V + +K + +R
Sbjct: 296 LGKTSPPRFLEEQEITLQTKSQRRDTSVTIRHGEEGV-VDLVI--LSETKEGNRLGKVRV 352
Query: 843 RHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLL 902
R R P GDKF+SRHGQKGV + P D+PF+ G+ PDLIINPHA PSRMTI +L
Sbjct: 353 RDLRVPEFGDKFASRHGQKGVIGLVVPQEDLPFT-EDGVIPDLIINPHAIPSRMTIGQVL 411
Query: 903 ESVAAK 908
E + K
Sbjct: 412 EMIGGK 417
>sp|Q6FLD5|RPB2_CANGA DNA-directed RNA polymerase II subunit RPB2 OS=Candida glabrata
(strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL
Y-65) GN=RPB2 PE=3 SV=1
Length = 1223
Score = 177 bits (450), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 114/298 (38%), Positives = 155/298 (52%), Gaps = 20/298 (6%)
Query: 628 THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
TH EIHP+ +L V A++ P+ DHNQSPRN YQ M KQ MG + FR D L
Sbjct: 738 THCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYNFRMDTMANILYY 797
Query: 688 PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
PQ P+ T E P G NAIVA+ Y+GY+ ED+MI+N+SS+DRG+ +++
Sbjct: 798 PQKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRS 857
Query: 748 ETIDLSDDGNKVDRGQKLFRRNKDAKSLHSV---IDSDGL--PYV---GQMIHPGEPYCS 799
G + + +R + H +D DGL P V G+ I G+
Sbjct: 858 YMDQEKKYGMSITETFEKPQRTNTLRMKHGTYDKLDEDGLIAPGVRVSGEDIIIGKTTPI 917
Query: 800 IYDKTTNSWRT---------NSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPII 850
D+ RT + +E+ VD V + N L + +R R T+ P I
Sbjct: 918 APDEEELGQRTAYHSKRDASTPLRSTENGIVDQVLI-TTNQDGL-KFVKVRVRTTKVPQI 975
Query: 851 GDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
GDKF+SRHGQKG + DMPF+ G+ PDLIINPHA PSRMT+A L+E + +K
Sbjct: 976 GDKFASRHGQKGTIGITYRREDMPFTA-EGIVPDLIINPHAIPSRMTVAHLIECLLSK 1032
Score = 87.0 bits (214), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 96/406 (23%), Positives = 164/406 (40%), Gaps = 41/406 (10%)
Query: 71 FGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSM 130
G+ P+ML+++ C+L A L LKE +MGGYFI+NG E+V L Q
Sbjct: 165 IGRLPIMLRSKNCYLSDATESDLYKLKECPFDMGGYFIINGSEKV-----LIAQERSAGN 219
Query: 131 VRSSFRDRREGYTDKAVVIRCVRKDQ----SSVTLKLYYLLNGSVR-LGFWLQGKEYLLP 185
+ F+ IR + S++ +KLY + S R + L + +P
Sbjct: 220 IVQVFKKAAPSPISHVAEIRSALEKGSRFISTLQVKLYGRESSSARTIKATLPYIKQDIP 279
Query: 186 VGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRL 245
+ I+ +AL D EI H+ CYD V + E +K + + + R
Sbjct: 280 IVIIFRALGIIPDGEILEHI--CYD---------VNDWQMLEMLKPCVED--GFVIQDRE 326
Query: 246 QCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLND----NNDKFNLLIFMLQKLF 301
L IG + G++ E A+ +++ H+ + K L +M+ +L
Sbjct: 327 TALDFIGRRGTAL--GIKKEKRIQYAKDILQKEFLPHITQLEGFESRKAFFLGYMINRLL 384
Query: 302 SLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFF 361
D+ D + + L G L+ K +KL +D + +
Sbjct: 385 LCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLF-------RKLTKDIFRYMQRTVEEA 437
Query: 362 NLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFISFF 421
N N+K + +K I + ++ L TG Q + RAG + R + +S
Sbjct: 438 NDFNMKLAIN---AKTITSGLKYALATGNWGEQKKA-MSSRAGVSQVLNRYTYSSTLSHL 493
Query: 422 RAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMT 467
R + G + R+L WG +CP TP+G+ CGL+ +++
Sbjct: 494 RRTNTPIGRDG-KLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLS 538
>sp|Q54J75|RPB2_DICDI DNA-directed RNA polymerase II subunit rpb2 OS=Dictyostelium
discoideum GN=polr2b PE=3 SV=1
Length = 1170
Score = 177 bits (448), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 108/298 (36%), Positives = 152/298 (51%), Gaps = 20/298 (6%)
Query: 628 THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
TH EIHP+ +L + ++ P+ DHNQSPRN YQ M KQ MG + + R D + L
Sbjct: 690 THCEIHPSMILGICCSIIPFPDHNQSPRNTYQAAMGKQAMGVYITNYQLRMDTMAHVLFY 749
Query: 688 PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
PQ P+V T + E P G N VA+ Y+GY+ ED++ILN+S++DRG+ Y+
Sbjct: 750 PQKPLVTTRSMEYLHFRELPAGQNVCVAIACYSGYNQEDSVILNQSAIDRGLFRSMFYRA 809
Query: 748 ETIDLSDDGNKVDRGQKLFRRNKDAKSLHSV---IDSDGLPYVGQ-------MIHPGEPY 797
+ + ++ + R+ A H ID DGL G +I P
Sbjct: 810 YKDEQKKQTSLMEEVFEKPERDTCAGMRHGSYEKIDDDGLVAPGVRVAGDDIIIGKTTPL 869
Query: 798 CSIYDKTTNSWRTNSR-------KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPII 850
D R +++ + SE+ VD V + S + +R R R P I
Sbjct: 870 PPSDDDLGPKTRRHTKRDSSTALRSSETGIVDQVI--LTTSGEGFKFCKVRVRSMRVPQI 927
Query: 851 GDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
GDKFSSRHGQKG C + D+PF+ V G+ PD+I+NPHA PSRMTI L+E + K
Sbjct: 928 GDKFSSRHGQKGTCGMAYRQEDLPFT-VEGIVPDIIVNPHAIPSRMTIGQLIECLLGK 984
Score = 78.6 bits (192), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 97/416 (23%), Positives = 180/416 (43%), Gaps = 51/416 (12%)
Query: 65 VRERFNFGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQ 124
V +R G+ P+ML+++ C L AD + L ++ E + + GGYFI+NG E+ V++ ++
Sbjct: 147 VLKRIFIGKVPIMLRSQYCMLNEADDRDLTTMGECSFDQGGYFIINGSEK----VLIAQE 202
Query: 125 NYPMSMVRSSFRDRREGYTDKAVVIRCVR---KDQSSVTLKLYYLLN-GSVRLGFWLQGK 180
+ V + Y+ A + C + S++ LK+ + N G V + +
Sbjct: 203 KMNNNHVYVFKKSPPSKYSYVAEIRSCQETGSRPTSTMYLKMLHNTNKGPVGIKATVPYI 262
Query: 181 EYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEV---- 236
+ +PV IV +AL D +I H+ CYD K + + P + E I EV
Sbjct: 263 KQDVPVIIVFRALGFVADKDILEHI--CYDFK-DAQMMDLMRPSLEESFVIQSQEVALDY 319
Query: 237 ---QDLSLTTRLQCLQHIGEHFQP-VIDGLQSESYYAVAETVIRDYIFVHLNDNNDKFNL 292
+ ++ TR Q ++ E Q ++ + +Y + YI L
Sbjct: 320 LGKRGSTMGTREQRIKFAREVLQKEMLPHVSVAEFYETKKAFYFGYI---------THRL 370
Query: 293 LIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIE 352
L+ L++ D+ D N+ + L G L+ ++ + + + +Q I+
Sbjct: 371 LLASLER--------RPLDDRDHFANKRLDLAGPLLGTLFRQLFKKLTKDVRLYLQRCID 422
Query: 353 NNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRL-ATQTGLDLQQRAGYTVQAER 411
K +F + +K SK I + ++ L TG ++++G ++G R
Sbjct: 423 ---KDKEFIASSAVK-------SKTITSGLKYSLATGNWGSSKSG---GTKSGVAQVLNR 469
Query: 412 LNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMT 467
L F +S R ++ G + R+L WG +CP TP+G+ CGL+ ++
Sbjct: 470 LTFASTLSHLRRLNTPIGREG-KLAKPRQLHNTHWGIVCPSETPEGQACGLVKNLA 524
>sp|P08518|RPB2_YEAST DNA-directed RNA polymerase II subunit RPB2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPB2 PE=1 SV=2
Length = 1224
Score = 175 bits (443), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 116/301 (38%), Positives = 155/301 (51%), Gaps = 26/301 (8%)
Query: 628 THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
TH EIHP+ +L V A++ P+ DHNQSPRN YQ M KQ MG + R D L
Sbjct: 739 THCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYNVRMDTMANILYY 798
Query: 688 PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
PQ P+ T E P G NAIVA+ Y+GY+ ED+MI+N+SS+DRG+ +++
Sbjct: 799 PQKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRS 858
Query: 748 ETIDLSDDGNKVDRGQKLFRRNKDAKSLHSV---IDSDGLPYVGQMIHPGEPYCSIYDKT 804
G + + +R + H +D DGL G + GE I KT
Sbjct: 859 YMDQEKKYGMSITETFEKPQRTNTLRMKHGTYDKLDDDGLIAPGVRV-SGEDV--IIGKT 915
Query: 805 T---------------NSWRTNSR--KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRN 847
T +S R S + +E+ VD V V N L + +R R T+
Sbjct: 916 TPISPDEEELGQRTAYHSKRDASTPLRSTENGIVDQVLV-TTNQDGL-KFVKVRVRTTKI 973
Query: 848 PIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAA 907
P IGDKF+SRHGQKG + DMPF+ G+ PDLIINPHA PSRMT+A L+E + +
Sbjct: 974 PQIGDKFASRHGQKGTIGITYRREDMPFTA-EGIVPDLIINPHAIPSRMTVAHLIECLLS 1032
Query: 908 K 908
K
Sbjct: 1033 K 1033
Score = 87.0 bits (214), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 98/409 (23%), Positives = 167/409 (40%), Gaps = 47/409 (11%)
Query: 71 FGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSM 130
G+ P+ML+++ C+L A L LKE +MGGYFI+NG E+V L Q
Sbjct: 167 IGRLPIMLRSKNCYLSEATESDLYKLKECPFDMGGYFIINGSEKV-----LIAQERSAGN 221
Query: 131 VRSSFRDRREGYTDKAVVIRCVRKDQ----SSVTLKLYYLLNGSVR-LGFWLQGKEYLLP 185
+ F+ IR + S++ +KLY S R + L + +P
Sbjct: 222 IVQVFKKAAPSPISHVAEIRSALEKGSRFISTLQVKLYGREGSSARTIKATLPYIKQDIP 281
Query: 186 VGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAE---VQDLSLT 242
+ I+ +AL D EI H+ CYD V + E +K + + +QD
Sbjct: 282 IVIIFRALGIIPDGEILEHI--CYD---------VNDWQMLEMLKPCVEDGFVIQD---- 326
Query: 243 TRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLND----NNDKFNLLIFMLQ 298
R L IG + G++ E A+ +++ H+ + K L +M+
Sbjct: 327 -RETALDFIGRRGTAL--GIKKEKRIQYAKDILQKEFLPHITQLEGFESRKAFFLGYMIN 383
Query: 299 KLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKF 358
+L D+ D + + L G L+ K + + + +Q +E +
Sbjct: 384 RLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLFKKLTKDIFRYMQRTVE---EAH 440
Query: 359 DFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFI 418
DF N+K + +K I + ++ L TG Q + RAG + R + +
Sbjct: 441 DF----NMKLAIN---AKTITSGLKYALATGNWGEQKKA-MSSRAGVSQVLNRYTYSSTL 492
Query: 419 SFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMT 467
S R + G + R+L WG +CP TP+G+ CGL+ +++
Sbjct: 493 SHLRRTNTPIGRDG-KLAKPRQLHNTHWGLVCPAETPEGQACGLVKNLS 540
>sp|A5DHT2|RPB2_PICGU DNA-directed RNA polymerase II subunit RPB2 OS=Meyerozyma
guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 /
JCM 1539 / NBRC 10279 / NRRL Y-324) GN=RPB2 PE=3 SV=3
Length = 1236
Score = 174 bits (441), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 114/303 (37%), Positives = 160/303 (52%), Gaps = 32/303 (10%)
Query: 629 HEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTP 688
H EIHP+ +L V A++ P+ DHNQSPRN YQ M KQ MG + R D L P
Sbjct: 749 HCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYSVRMDTMANILYYP 808
Query: 689 QTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTE 748
Q P+ T E P G NAIVA+ Y+GY+ ED+MI+N+SS+DRG+ ++T
Sbjct: 809 QKPLATTRAMEHLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDRGLFRSLFFRT- 867
Query: 749 TIDLSDDGNKVDRGQKLFRRNKDAKSL------HSVIDSDGLPYVGQMIHPGEPYCSIYD 802
+DL + + + + F + + +L + +D DGL G + GE I
Sbjct: 868 YMDL--EKRQGMKALETFEKPSRSDTLRLKHGTYEKLDDDGLIAPGIRVS-GEDI--IIG 922
Query: 803 KTT---------------NSWRTNSR--KGSESVFVDYVAVDMKNSKNLPQKANIRFRHT 845
KTT ++ R S + +ES VD V + + + + +R R T
Sbjct: 923 KTTPIPPDTEELGQRTQYHTKRDASTPLRSTESGIVDQVL--LTTNGDGAKFVKVRMRTT 980
Query: 846 RNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESV 905
+ P IGDKF+SRHGQKG + DMPF+ G+ PDLIINPHA PSRMT+A L+E +
Sbjct: 981 KVPQIGDKFASRHGQKGTVGVTYRHEDMPFTS-QGIVPDLIINPHAIPSRMTVAHLIECL 1039
Query: 906 AAK 908
+K
Sbjct: 1040 LSK 1042
Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 121/525 (23%), Positives = 201/525 (38%), Gaps = 60/525 (11%)
Query: 71 FGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYPMSM 130
G+ P+ML+++ C L+ + LKE +MGGYF++NG E+V L Q +
Sbjct: 160 LGKVPIMLRSKFCMLRDLGEHEFYELKECPYDMGGYFVINGSEKV-----LIAQERSAAN 214
Query: 131 VRSSFRDRREGYTDKAVVIRCVRKDQ----SSVTLKLYYLLNGSVRLGFWLQGKEYL--- 183
+ F+ IR + SS+ +KLY S Y+
Sbjct: 215 IVQVFKKAAPSPISHVAEIRSALERGSRLISSMQIKLYGREEKSTSNRTIKATLPYIKED 274
Query: 184 LPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTT 243
+P+ IV +AL D +I H+ CYD + + P V E I EV L
Sbjct: 275 IPIVIVFRALGIVPDGDILEHI--CYDAN-DWQMLEMLKPCVEEGFVIQEREVA-LDFIG 330
Query: 244 RLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLNDNND----KFNLLIFMLQK 299
R L G++ E A+ +++ + ++ + K L +M+ +
Sbjct: 331 RRGAL------------GIKREKRIQYAKDILQKELLPNITQDEGFETRKAFFLGYMVNR 378
Query: 300 LFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLIQDEIENNGKKFD 359
L D+ D + + L G L+ + + + +Q +EN+
Sbjct: 379 LLLCALERKEPDDRDHFGKKRLDLAGPLLASLFRILFKKLTKDIYNYMQRCVEND----K 434
Query: 360 FFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQRAGYTVQAERLNFLRFIS 419
FNL K S+ I + L TG Q + RAG + R + +S
Sbjct: 435 VFNLTLAVK------SQTITDGLRYSLATGNWGEQKKA-MSSRAGVSQVLNRYTYSSTLS 487
Query: 420 FFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSR 479
R + G + R+L WG +CP TP+G+ CGL+ +++ ++ S
Sbjct: 488 HLRRTNTPIGRDG-KIAKPRQLHNTHWGLVCPAETPEGQACGLVKNLSLMSCISVGTPSE 546
Query: 480 GNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVLLDGRVVGV--IPSSEIEKV 537
IL L GM P L V S P V ++G VG P+ ++ +
Sbjct: 547 -----------PILYFLEEWGMEP-LEDYVPSNSPDSTRVFVNGVWVGTHREPAHLVDTM 594
Query: 538 VAHLRRLKVS-AASVIPDDLEVGY-VPLSLGGAYPGLYLFTSPPK 580
+ RR +S S+I D E + + G Y L++ P+
Sbjct: 595 RSLRRRGDISPEVSIIRDIREKEFKIFTDAGRVYRPLFIVDDDPE 639
>sp|Q753Q4|RPB2_ASHGO DNA-directed RNA polymerase II subunit RPB2 OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=RPB2 PE=3 SV=1
Length = 1222
Score = 172 bits (435), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 114/304 (37%), Positives = 153/304 (50%), Gaps = 32/304 (10%)
Query: 628 THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
TH EIHP+ +L V A++ P+ DHNQSPRN YQ M KQ MG + R D L
Sbjct: 737 THCEIHPSMILGVAASVIPFPDHNQSPRNTYQSAMGKQAMGVFLTNYNVRMDTMANILYY 796
Query: 688 PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
PQ P+ T E P G NAIVA+ Y+GY+ ED+MI+N+SS+D G+ +++
Sbjct: 797 PQKPLGTTRAMEYLKFRELPAGQNAIVAIACYSGYNQEDSMIMNQSSIDSGLFRSLFFRS 856
Query: 748 ETIDLSDDGNKVDRGQKLFRRNKDAKSLHSV---IDSDGLPYVGQMIHPGEPYCS---IY 801
G + + R + H +D DGL I PG I
Sbjct: 857 YMDQEKRIGMSITESFEKPHRTNTLRMKHGTYEKLDDDGL------IAPGVRVSGDDIII 910
Query: 802 DKTT---------------NSWRTNSR--KGSESVFVDYVAVDMKNSKNLPQKANIRFRH 844
KTT +S R S + +E+ VD V + N + L + +R R
Sbjct: 911 GKTTPIPPDAEELGQRTAFHSKRDASTPLRSTENGIVDQVLI-TTNQEGL-KFVKVRVRT 968
Query: 845 TRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLES 904
T+ P IGDKF+SRHGQKG + DMPF+ G+ PDLIINPHA PSRMT+A L+E
Sbjct: 969 TKVPQIGDKFASRHGQKGTIGITYRREDMPFTA-EGVVPDLIINPHAIPSRMTVAHLIEC 1027
Query: 905 VAAK 908
+ +K
Sbjct: 1028 LLSK 1031
Score = 82.0 bits (201), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 100/426 (23%), Positives = 170/426 (39%), Gaps = 42/426 (9%)
Query: 52 DVEFQYLDAGSPVVRE-RFNFGQFPVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILN 110
D++++ + S E + G+ P+ML+++ C L L LKE +MGGYFI+N
Sbjct: 142 DLKYEIIQEESEDTEEGKIFIGRVPIMLRSKYCLLDDLSESDLYRLKECPFDMGGYFIIN 201
Query: 111 GLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQ----SSVTLKLYYL 166
G E+V L Q + F+ IR + S++ +KLY
Sbjct: 202 GSEKV-----LIAQERSAGNIVQVFKKSAPSPISHIAEIRSALEKGSRFISTLQVKLYGR 256
Query: 167 LNGSVR-LGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLV 225
+ R + L + +P+ I+ +AL D EI H+ CYD+ + + P V
Sbjct: 257 EGSTSRTIKATLPYIKQDIPIVIIFRALGIIPDGEILEHI--CYDQN-DWQMLEMLKPCV 313
Query: 226 SERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLND 285
E I QD R L IG + G++ E A+ +++ H+
Sbjct: 314 EEGFVI-----QD-----RETALDFIGRRGTAL--GIKKEKRIQYAKDILQKEFLPHITQ 361
Query: 286 ----NNDKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLR 341
+ K L +M+ +L D+ D + + L G L+ K R
Sbjct: 362 LEGFESRKAFFLGYMINRLLLCALDRKDQDDRDHFGKKRLDLAGPLLAQLFKTLFRKLTR 421
Query: 342 KGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQQ 401
+ +Q +E K F N+K ++ + I ++ L TG Q +
Sbjct: 422 DILRFMQRSVE-EAKDF------NLKLAVK---ATTITAGLKYALATGNWGEQKKA-MSS 470
Query: 402 RAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCG 461
RAG + R + +S R + G + R+L WG +CP TP+G+ CG
Sbjct: 471 RAGVSQVLNRYTYSSTLSHLRRTNTPIGRDG-KLAKPRQLHNTHWGLVCPAETPEGQACG 529
Query: 462 LLNHMT 467
L+ +++
Sbjct: 530 LVKNLS 535
>sp|Q6GZR3|RPB2_FRG3G Putative DNA-directed RNA polymerase II subunit RPB2 homolog OS=Frog
virus 3 (isolate Goorha) GN=FV3-062L PE=3 SV=1
Length = 1221
Score = 171 bits (433), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 259/1045 (24%), Positives = 397/1045 (37%), Gaps = 241/1045 (23%)
Query: 6 SADFEPLRELVRHHIESFDYMLDEGLSEMFDHCRQAKISYTG------------------ 47
SA+ P VRHHIESFD ML M R+ +S G
Sbjct: 89 SANMHP-SNFVRHHIESFDDMLWNEFPAMV--AREKPVSVKGYRVKFGTVRYEPPCPDGK 145
Query: 48 -------KLMADVEFQYLDA-----------GSPVVRERFNFGQFPVMLKTRRCHLQGAD 89
+ + Y A G V R + PVM+ + C +
Sbjct: 146 PWEKLTPAMARRTDATYHSAAVCDLTVTDPKGLETVYPRLELCKIPVMVGSAVCWTRTEG 205
Query: 90 SQKLVSLKEEAAEMGGYFILNGLERVFRSVILPKQNYP---------MSMVRSSFRDRRE 140
S E ++ GGYFI+ G ERV I P + P + RS R+ R+
Sbjct: 206 SPLP---GECPSDPGGYFIIKGKERVVVPHIRPAYDQPCVYKNGDGWLCEFRSVNRETRQ 262
Query: 141 GYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLE 200
V+++ + + L Y+ K+Y+ PVG+V KAL T
Sbjct: 263 -----TVLVQAKTDCRRKLEFSLPYI-------------KQYV-PVGLVFKALGKTAREA 303
Query: 201 IFNHLTCCYDEKYKKEKGAVGSPLVSERVKIILAEVQDLSLTTRLQCLQHIGEHFQPVID 260
+ C +GS L E + V S+ L QH PV D
Sbjct: 304 V---AMC-----------GLGSFLGDE---VSCRTVHHQSMAALLM-EQHASAPEDPVAD 345
Query: 261 -----------------GLQSESYYAVAET----------------VIRDYIFVHLNDNN 287
G + Y A V+ IF+H
Sbjct: 346 LAKHVPDGRSVYSKQAEGAKQAKYADRASVEEDRNAKGSKEDYVRHVLAGEIFLH---GG 402
Query: 288 DKFNLLIFMLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWLRKGKKLI 347
D L +M++++ + D L N+ + G LI L L K+ +
Sbjct: 403 DAAEHLGWMVKRMADAASGIGTCTDRDDLANKRVDATGPLIAFLLDGLL-------KQYV 455
Query: 348 QDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQT-GLDLQQRAGYT 406
+ +++ G + + ++ M + S+ TG + G R G +
Sbjct: 456 KLFVKSAGCQKNLCPYTVLQNSM------VMTNSLHMCFATGNWTVKRLGPPSYVRVGVS 509
Query: 407 VQAERLNFLRFISFFRAVHRGASFAGLRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHM 466
N+ +S R + SF G + +R+L +GFLCP TP+GE G++ +M
Sbjct: 510 QVLSNNNYGARVSHLRRIMHAVSFRG-KNIRMRQLHSSHYGFLCPYETPEGEKVGIVLNM 568
Query: 467 TSTCRVASYYDSRGNIRDFSKMRTSILRVLIGV-GMIPSLP-KLVKSGPPAVLSVLLDGR 524
A + ++ ++ + +R+ G+ G P +L SG SV +DG
Sbjct: 569 AEG---AGF-----SLETPREVVLATVRLGKGLPGFFEGAPARLAWSGAAGSASVDVDGV 620
Query: 525 VVGVIPSSEIEKVVAHLR--RLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFV 582
+ GV V +R RL + SV+ +E L G + L P+ +
Sbjct: 621 LCGVTGDP-----VGFVREARLCLPGVSVVWKKVEREIHLLGCQGRFVRRVL---DPEGI 672
Query: 583 RPVRNISLPSEESQNIEL-----------IGPFEQVFM---EIRCPDGGDGGRRNAFPAT 628
R S P+ E ++IE+ + V++ E+ GDG + PA+
Sbjct: 673 RGSGYDSPPAPEERDIEMDPAPSSSPSDSLPCPPGVYVCAQELSVCSLGDGEYADP-PAS 731
Query: 629 HEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTP 688
EI M SV+ P+ DH QSPRN YQ M KQ +GF R D L+ L P
Sbjct: 732 --EILTDAMSSVI----PFYDHTQSPRNAYQSNMGKQAIGFPAVNCSDRYDATLHRLDYP 785
Query: 689 QTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTE 748
Q +V + + + G DE G +VA++ G++ ED+++LN SS+DRG+ Y+T
Sbjct: 786 QKSLVDSRSVKRLGFDEMAHGALPVVAIMTAGGFNQEDSVVLNASSLDRGLFSCVTYRTV 845
Query: 749 TID----------------------------LSDDG-----------NKVDRGQKLFRR- 768
+ L DDG +V+ +K +R
Sbjct: 846 SCADKRRTKYDSEVVCLPDWGLRNREWDYDLLGDDGVIDPSCAGALARRVEGKRKAAKRP 905
Query: 769 --NKDAKSLHSVIDSDGLP----YVGQMIHPGEPYCSIYDKTTNSWRTN---SRKGSESV 819
+ + D+ +P VG++ H P N R + + K SE
Sbjct: 906 AGQRTGGGPAGLCDALWIPAGTVLVGKVSHSLGP-------GGNPMRRDVSLTVKQSEEG 958
Query: 820 FVDYVAVDM-KNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGV 878
++D V VD+ + K L +R R R+P +GDKF+S QKG C + DMPF
Sbjct: 959 YLDRVTVDVDSDGKKL---VKVRLRTPRHPEMGDKFASFTAQKGTCGAVLTQEDMPFDK- 1014
Query: 879 TGMRPDLIINPHAFPSRMTIAMLLE 903
G+ PDLIINPHAFPSRMT+ LL+
Sbjct: 1015 DGVVPDLIINPHAFPSRMTVNYLLQ 1039
>sp|Q7T6X7|RPO2_MIMIV DNA-directed RNA polymerase subunit 2 OS=Acanthamoeba polyphaga
mimivirus GN=RPO2 PE=1 SV=2
Length = 1196
Score = 168 bits (426), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 244/999 (24%), Positives = 403/999 (40%), Gaps = 205/999 (20%)
Query: 28 DEGLSEMFDHCRQAKISYTGKLMADVEFQYLDA-------------GSPVVRERFNFGQF 74
+E L D R+ +ISY+ K A V Q+ D GSP + +
Sbjct: 91 EENLLYPLDAIRK-QISYSAKYTATVT-QWQDIVDIDTKKTETRIIGSP--EKDVPIAKI 146
Query: 75 PVMLKTRRCHLQGADSQKLVSLKEEAAEMGGYFILNGLERVFRSV--ILPK--------- 123
P+M+ ++ C+L + ++ K + GGYFI+NG E+V SV ++P+
Sbjct: 147 PIMVLSKYCNLT---LRPDIAGKHCKYDAGGYFIVNGSEKVVLSVESMIPRKPVVFTQRD 203
Query: 124 QNYPMSMVR------SSFRDRREGYTDKAVVIRCVRKDQSSVTLKLYYLLNGSVRLGFWL 177
QN + VR S F + +T K K +S+ L + + S+
Sbjct: 204 QNSLLYYVRVQSIPASQFVGNPQLFTVKM-------KRDNSIILSIPHFKEVSIFTFIRA 256
Query: 178 QGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVGSPLVS--ERVKIILAE 235
G E IV L + ++ N L+ C + + +P V+ E ++I+ +
Sbjct: 257 LGIE--TDEDIVDSILDVKKEKDLLNLLSICMN--------SSNTPSVTKEEALEIMANQ 306
Query: 236 VQDLSLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAETVIRDYIFVHLN--------DNN 287
++ T P + Q Y + ++ ++ H+ D
Sbjct: 307 IKSTKTFTDTN----------PEVKAEQRRRYL---DKIMTQFVLPHITSGTGDPEIDKI 353
Query: 288 DKFNLLIFMLQKLFSL-------VDHTSVSDNPDSLQNQEILLPGHLITIYLKEKLEDWL 340
K + + +M+ KL V+ D+ DS+ N+ I L G L+ K+ + L
Sbjct: 354 YKAHYICYMIHKLLKCYLRGAREVEEYRGCDDRDSMVNKRIDLTGRLLGGLFKQFYDKML 413
Query: 341 RKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKTGRLATQTGLDLQ 400
K+ + K D NI ++ N +Q + L TG +Q+
Sbjct: 414 NDCNKIFRT------KNIDDKKPPNIIPHIKPNSIEQ---GLRQALSTGNFGSQS----- 459
Query: 401 QRAGYTVQAERLNFLRFISFFRAVHRGASFAG-LRTTSVRKLLPESWGFLCPVHTPDGEP 459
R G + R+N L +S+ R V A ++ TS R L +G +CP+ +P+G+P
Sbjct: 460 -RKGLSQMLNRMNHLHSLSYMRRVITPTVDASTMKMTSPRHLHNTQYGSMCPLESPEGKP 518
Query: 460 -CGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLS 518
GL+ +M + +S+ I + S L +G I +L K +
Sbjct: 519 KTGLVKNMAMMEGITINMNSQIPIIE------SYL-----IGKITTLESANKKRLHQYVK 567
Query: 519 VLLDGRVVGVIPSSEIEKVVAHLRRLKVSAASVIPDDLEVG-YVPLSLGGAYPGLYLFTS 577
V L+G +GV + I K+ LR ++ E+ V L L +++T
Sbjct: 568 VFLNGNWLGV--TRNIIKIHNDLRAMRFRG--------ELSRMVGLVLNYKTAEFHIYTD 617
Query: 578 PPKFVRPVRNIS------------------------------LPSEESQNIELIGPFEQV 607
+ +RP ++ + EE QNI ++ F Q
Sbjct: 618 GGRLIRPYLTVTDNKLNFKPEMLDEVNSWEEFLAKFPEVIEYVDKEEEQNI-MLAVFPQY 676
Query: 608 FME---------IRCPDGGDG-GRRNAFPA------THEEIHPTGMLSVVANLTPYSDHN 651
+ I D + R N + TH EIHP +L ++++ P+ DHN
Sbjct: 677 IQDANRIMSKKPINSRDQLNKINRTNRYDDNVYVRYTHCEIHPCMILGLISSNIPFPDHN 736
Query: 652 QSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQTPIVRTNTYTKYGIDEYPTGTN 711
QSPR ++Q A+Q MG + + R D Y L PQ P+V + G +P G N
Sbjct: 737 QSPRGIFQYNQARQAMGLYISDYRERTDIS-YILYHPQIPLVTSRASKYTGTHIFPAGEN 795
Query: 712 AIVAVLAYTG-YDMEDAMILNKSSVDRGMCHGQIYQT-------------ETIDLSDDGN 757
+IVA+ +YTG + ED++++N S++ +G Q + +I + D N
Sbjct: 796 SIVAIASYTGLMNQEDSLVINDSAIQKGYMRAQALKKYMEIIKKNPASSQTSIFMKPDRN 855
Query: 758 KVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYD-KTTNSWRTNSRKGS 816
KVD +DA + + +G V +I G+ + + K T K +
Sbjct: 856 KVDNL-------RDAN--YDKLSEEGYAKVETVIRDGDVVIGVVNPKPTAREDEKQYKDA 906
Query: 817 ESVF-------VDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSSRHGQKGVCSQLWP 869
S++ VD V ++ N K +R R R P +GDKFSSR GQKG
Sbjct: 907 SSIYKSLIPGAVDKVITEVNNDGYPIIK--MRIRSERIPNVGDKFSSRAGQKGTIGYKAH 964
Query: 870 DIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
DM FS +G+ PD+IINP+ P RMTI L+E + K
Sbjct: 965 RADMLFSK-SGLIPDIIINPNCMPKRMTIGQLIECLLGK 1002
>sp|Q03587|RPOB_THEAC DNA-directed RNA polymerase subunit B OS=Thermoplasma acidophilum
(strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=rpoB PE=3 SV=1
Length = 1195
Score = 167 bits (424), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 107/305 (35%), Positives = 160/305 (52%), Gaps = 35/305 (11%)
Query: 628 THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
TH EI P +L VVA++ PY +HN SPR MAKQ++GF+ ++ R D + + L
Sbjct: 712 THLEIDPAMILGVVASIIPYPEHNSSPRITIASAMAKQSLGFAQSNVRIRPDTRGHLLHY 771
Query: 688 PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
PQ P+VRT D P G N +VAVL+Y GY+++DA+++NK++++RG+ ++T
Sbjct: 772 PQVPLVRTRVMDYIHYDRRPAGQNFVVAVLSYEGYNIQDALVINKAAIERGLGRSTFFRT 831
Query: 748 ETIDLSDDGNKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQMIHPG----EPYCSIYD- 802
S + + GQ+ +K H +I + Y + G E Y D
Sbjct: 832 ----YSAEERRYPGGQE----DKFEIPTHDIIGARAEEYYKNLDDSGIIFPEAYVEGSDV 883
Query: 803 ---KTT--------------NSWRTNS--RKGSESVFVDYVAVDMKNSKNLPQKANIRFR 843
KT+ R +S + +ES +VD V + + S + + I+ R
Sbjct: 884 LIGKTSPPRFLEEGEERLGPQRRRESSVTMRPNESGYVDNVFLTVSESNS--RVVKIKVR 941
Query: 844 HTRNPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLE 903
R P +GDKF+SRHGQKGV + P DMPF+ G+ PDLI NPH+ PSRMT+ +LE
Sbjct: 942 SERIPELGDKFASRHGQKGVVGLVVPQEDMPFTE-DGIIPDLIFNPHSIPSRMTVGHILE 1000
Query: 904 SVAAK 908
+ K
Sbjct: 1001 MIGGK 1005
Score = 57.4 bits (137), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 100/509 (19%), Positives = 191/509 (37%), Gaps = 115/509 (22%)
Query: 58 LDAGSPVVRERFNFGQFPVMLKTRRCHLQGAD----------------SQKLVSLKEEAA 101
++ GS +++ G PVM++++ C L + +KL + E+
Sbjct: 129 IEKGSEIIK----VGDLPVMVRSKICTLSEENLDQYIEKNNGPIGLSRREKLQYVGEDPD 184
Query: 102 EMGGYFILNGLERVFRSVILPKQNYPMSMVRSSFRDRREGYTDKAVVIRCVRKDQSSVTL 161
+ GGYFI+ G ERV S+ ++ + + + DR E + + V ++
Sbjct: 185 DPGGYFIIGGSERVIVSL----EDLAPNKIMVEWEDRYESKVEVSKVFS--QRGGFRALT 238
Query: 162 KLYYLLNGSVRLGFWLQGKEYLLPVGIVLKALVDTNDLEIFNHLTCCYDEKYKKEKGAVG 221
+ +G++ + + +P+ I++KAL D+++ + +
Sbjct: 239 SMEKGTDGTINVS--IPSVAGTVPLVILMKALGLERDVDVHDAIAS-------------- 282
Query: 222 SPLVSERVKIILAEVQDL---------SLTTRLQCLQHIGEHFQPVIDGLQSESYYAVAE 272
V E II + ++D + T + ++ + F G E
Sbjct: 283 ---VPEMEPIIYSNIEDSKNPKVLPPNGVNTTEDAISYLEKRFAA---GQAKEFRDKKIS 336
Query: 273 TVIRDYIFVHLNDN-NDKFNLLIF---MLQKLFSLVDHTSVSDNPDSLQNQEILLPGHLI 328
++ + HL D+ +D+ I+ M + L L D+ D L N+ I L G L+
Sbjct: 337 QMLDHSLLPHLGDSPSDRIRKAIYLGRMARSLLELSLGIRKEDDKDHLANKRIKLAGDLM 396
Query: 329 TIYLKEKLEDWLRKGKKLIQDEIENNGKKFDFFNLANIKKVMEKNPSKQIGTSIETMLKT 388
+ + ++ ++K +EK +++ G I ++
Sbjct: 397 DELFRSAFQSVMK-----------------------DLKYQLEKTYNRKRGIKIRPAVRQ 433
Query: 389 GRL------ATQTGLDLQQRAGYTVQAERLNFLRFISFFRAVHRGASFAGLRTT----SV 438
L A TG + R G + +R++ L IS R + + L T
Sbjct: 434 DLLTQRVLHAMSTGNWIGGRTGVSQLLDRVSNLSTISHLRRI-----ISPLTRTQPHFEA 488
Query: 439 RKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRVASYYDSRGNIRDFSKMRTSILRVLIG 498
R L P WG +CP TP+G+ CGL+ + V D S++ +L G
Sbjct: 489 RDLHPTQWGRICPNETPEGQNCGLVKNAALLINVTQGIDP-----------DSVMEILKG 537
Query: 499 VGMIPSLPKLVKSGPPAVLSVLLDGRVVG 527
+ + L + K G V L+G +G
Sbjct: 538 MDVREVLEESPKKG-----RVYLNGDFIG 561
>sp|P0CX03|RPOB1_HALSA DNA-directed RNA polymerase subunit B' OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=rpoB1 PE=3
SV=1
Length = 608
Score = 162 bits (411), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 101/302 (33%), Positives = 152/302 (50%), Gaps = 27/302 (8%)
Query: 628 THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
TH EI P + + A + PY +HN SPR M KQ++G + R D + + L
Sbjct: 125 THLEIDPQLIFGIGAGMIPYPEHNASPRITMGAGMMKQSLGLPAANYRIRPDTRQHLLHY 184
Query: 688 PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
PQ +V T T + G D+ P G N +VAV++Y G+++EDA+++NK SV+R + ++T
Sbjct: 185 PQKAMVNTQTTEQIGYDDRPAGQNFVVAVMSYEGFNIEDALVMNKGSVERALSRSHFFRT 244
Query: 748 -ETIDLSDDGNKVDR----GQKLFRRNKDAKSLHSVIDSDGLP-----------YVGQMI 791
E + G + DR G + R + ++ +D DGL +G+
Sbjct: 245 YEGEERRYPGGQEDRFEIPGDDV--RGARGEDAYTHLDDDGLVNPETKVDDSSVLLGKTS 302
Query: 792 HP-----GEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTR 846
P E + + R G + V VD V + ++ + A + R R
Sbjct: 303 PPRFLEEPEDMGGLSPQKRRETSVTMRSGEDGV-VDTVT--LMEGEDGSKLAKVSVRDER 359
Query: 847 NPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVA 906
P +GDKF+SRHGQKGV L P DMPF+ G+ PDL++NPHA PSRMT+ +LE +
Sbjct: 360 IPELGDKFASRHGQKGVVGHLAPQEDMPFT-QEGVVPDLVLNPHALPSRMTVGHVLEMLG 418
Query: 907 AK 908
K
Sbjct: 419 GK 420
>sp|B0R8D5|RPOB1_HALS3 DNA-directed RNA polymerase subunit B' OS=Halobacterium salinarum
(strain ATCC 29341 / DSM 671 / R1) GN=rpoB1 PE=1 SV=1
Length = 608
Score = 162 bits (411), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 101/302 (33%), Positives = 152/302 (50%), Gaps = 27/302 (8%)
Query: 628 THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
TH EI P + + A + PY +HN SPR M KQ++G + R D + + L
Sbjct: 125 THLEIDPQLIFGIGAGMIPYPEHNASPRITMGAGMMKQSLGLPAANYRIRPDTRQHLLHY 184
Query: 688 PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
PQ +V T T + G D+ P G N +VAV++Y G+++EDA+++NK SV+R + ++T
Sbjct: 185 PQKAMVNTQTTEQIGYDDRPAGQNFVVAVMSYEGFNIEDALVMNKGSVERALSRSHFFRT 244
Query: 748 -ETIDLSDDGNKVDR----GQKLFRRNKDAKSLHSVIDSDGLP-----------YVGQMI 791
E + G + DR G + R + ++ +D DGL +G+
Sbjct: 245 YEGEERRYPGGQEDRFEIPGDDV--RGARGEDAYTHLDDDGLVNPETKVDDSSVLLGKTS 302
Query: 792 HP-----GEPYCSIYDKTTNSWRTNSRKGSESVFVDYVAVDMKNSKNLPQKANIRFRHTR 846
P E + + R G + V VD V + ++ + A + R R
Sbjct: 303 PPRFLEEPEDMGGLSPQKRRETSVTMRSGEDGV-VDTVT--LMEGEDGSKLAKVSVRDER 359
Query: 847 NPIIGDKFSSRHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVA 906
P +GDKF+SRHGQKGV L P DMPF+ G+ PDL++NPHA PSRMT+ +LE +
Sbjct: 360 IPELGDKFASRHGQKGVVGHLAPQEDMPFT-QEGVVPDLVLNPHALPSRMTVGHVLEMLG 418
Query: 907 AK 908
K
Sbjct: 419 GK 420
>sp|Q91F97|RPB2_IIV6 Probable DNA-directed RNA polymerase II subunit RPB2 homolog
OS=Invertebrate iridescent virus 6 GN=IIV6-428L PE=3
SV=1
Length = 1193
Score = 156 bits (394), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 144/532 (27%), Positives = 243/532 (45%), Gaps = 68/532 (12%)
Query: 413 NFLRFISFFRAVHRGASFAGL--RTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTC 470
N + F +FF + R G + T +R++ P S F CP TP+G+ G+ + +
Sbjct: 498 NKVSFGAFFSYLRRFVIPMGKEGKNTKIRQIHPSSIFFACPSETPEGQFVGITLNFSMLA 557
Query: 471 RVASYYDSRGNIRDFSKMRTSILRVLIGVGMIPSLPKLVKSGPPAVLSVL-LDGRVVGVI 529
V S S I++ + + + + + + L K LS++ ++G + G+
Sbjct: 558 EV-SIRTSSVVIKEIIEASHQAFKHVHEISLEENKQFLSK------LSIIFVNGGICGL- 609
Query: 530 PSSEIEKVVAHLRRLKVSAASVIPDDLEVGYVPLSLGGAYPGLYLFTSPPKFVRPVRNIS 589
+S+ +++++ +R LK+ + D+ ++P +++ + +F+RPV N
Sbjct: 610 -TSKPQQLLSDVRDLKLKHC--LKYDVSAVFIP-----ELKEVHISSDAGRFIRPVLN-- 659
Query: 590 LPSEESQNIELIGPFEQVFMEIRCPDGGDGGRRNAF-----------------PATHE-- 630
L S ++ + F+ C + G ++A+ P ++
Sbjct: 660 LQSIKTNGNVMWNSFQN------CLENGHVVYKDAYEIEQSQIAINLQDLSRYPTVYDSM 713
Query: 631 EIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQTPQT 690
EIH + ML V+A P+++H QSPR YQ MAKQ +G ++ + ++D + Q
Sbjct: 714 EIHASCMLGVMAAQIPFAEHTQSPRLCYQSSMAKQAIG-NIPSHHVKSDNTTRVMDYVQR 772
Query: 691 PIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQTETI 750
P+V T +++P G NA+VAV YTG++ ED++ILNK+S+DRGM H Y+T +
Sbjct: 773 PLVTTQIAEMNRFNDFPNGLNAMVAVAIYTGFNQEDSIILNKASIDRGMFHVVTYKTIIV 832
Query: 751 DLSDDG--NKVDRGQKLFRRNKDAKSLHSVIDSDGLPYVGQM----------IHPGEPYC 798
+ G K+ RR + L D+ PY G + + G+
Sbjct: 833 EERKIGVNEKICMPVASVRRMNNYSLLE---DNPESPYFGVVKVKSFVKRNDVLVGKVIT 889
Query: 799 SIYDKTTNSWRTNSR--KGSESVFVDYVAVDMKNSKNLPQKANIRFRHTRNPIIGDKFSS 856
I T +S SE VD + ++ SK I + P IGDKF S
Sbjct: 890 KISKDGTRQETDHSTIVSISEEGKVDRI---IRTSKKGILMFKIVIAQQKRPEIGDKFCS 946
Query: 857 RHGQKGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAAK 908
QKG + ++DMPF G PD+IINPH PSRMTI ++ S+ K
Sbjct: 947 AMAQKGTVGMILEEVDMPFME-DGSIPDMIINPHCLPSRMTINQIMASIMGK 997
Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Query: 39 RQAKISYTGKLMADV-EFQYLDAGSPVVRE--RFNFGQFPVMLKTRRCHLQGADSQKLVS 95
RQ I+Y + DV E+ D +V + R + P+ML++ C+L Q+ +
Sbjct: 123 RQKMITYDSFVFVDVLEYVLRDEEEILVNKHLRVQIAKIPIMLRSSTCNLYNCTPQERIE 182
Query: 96 LKEEAAEMGGYFILNGLERVF 116
L E + GGYFI+NG ERV
Sbjct: 183 LGEGIEDPGGYFIINGNERVL 203
>sp|P0C8K5|RPB2_ASFWA DNA-directed RNA polymerase subunit 2 OS=African swine fever virus
(isolate Warthog/Namibia/Wart80/1980) GN=War-063 PE=3
SV=1
Length = 1242
Score = 130 bits (327), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 87/287 (30%), Positives = 142/287 (49%), Gaps = 15/287 (5%)
Query: 628 THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
TH ++ P +L + A ++PY++ Q R Y+ +QT G+ + +R D +
Sbjct: 770 THVDV-PQAILGLAALVSPYANCTQPARVTYETNQGRQTGGWYCFSWPYRVDMNRFFQFY 828
Query: 688 PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
+ P+V+T + Y I P G N IVA + Y GY+ ED++I+++S +DRG G Y+
Sbjct: 829 NEMPLVKTIAHN-YVI---PNGLNTIVAYMIYGGYNQEDSVIVSQSFIDRGGFAGTFYRE 884
Query: 748 ETIDLSDDGNKVDRGQKLFRRN-KDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTN 806
E ++L D + L +N K + ++ DG VG ++ G+ K
Sbjct: 885 EKVELESDIESFGKPDPLITKNLKPGANYEKLV--DGFVPVGTVVKKGDIIIGKVAKIRG 942
Query: 807 SWRTNSRKGSESVFVDYVAVDMKNSKNLPQKAN------IRFRHTRNPIIGDKFSSRHGQ 860
++ SV + + ++ P N +R R+ RN IGDK SSR G
Sbjct: 943 EKDELNKYIDRSVMYGFDEPAVVDAVMRPHGPNDEIFGLMRLRYERNLNIGDKMSSRSGN 1002
Query: 861 KGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAA 907
KG+ + P DMPF+ G++PDLI+NPH+ PSRMT ++E+
Sbjct: 1003 KGIAALALPTSDMPFTE-DGLQPDLIVNPHSHPSRMTNGQMIETTVG 1048
Score = 36.2 bits (82), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 36/87 (41%), Gaps = 7/87 (8%)
Query: 36 DHCRQAKISYTG--KLMADVEF--QYLDAGSPVVRER---FNFGQFPVMLKTRRCHLQGA 88
+ R +SY+G L A+V Y + V R F FP+M + RCH
Sbjct: 115 NKARLCGLSYSGPVNLAAEVILTAHYSNGRQEVKRASIPPFQVSTFPIMRGSNRCHTHHL 174
Query: 89 DSQKLVSLKEEAAEMGGYFILNGLERV 115
+ E+ E GGYFI G E V
Sbjct: 175 SKTAKKEIGEDPNEPGGYFIARGGEWV 201
>sp|P0C8K4|RPB2_ASFP4 DNA-directed RNA polymerase subunit 2 OS=African swine fever virus
(isolate Tick/South Africa/Pretoriuskop Pr4/1996)
GN=Pret-065 PE=3 SV=1
Length = 1242
Score = 130 bits (327), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 87/287 (30%), Positives = 142/287 (49%), Gaps = 15/287 (5%)
Query: 628 THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
TH ++ P +L + A ++PY++ Q R Y+ +QT G+ + +R D +
Sbjct: 770 THVDV-PQAILGLAALVSPYANCTQPARVTYETNQGRQTGGWYCFSWPYRVDMNRFFQFY 828
Query: 688 PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
+ P+V+T + Y I P G N IVA + Y GY+ ED++I+++S +DRG G Y+
Sbjct: 829 NEMPLVKTIAHN-YVI---PNGLNTIVAYMIYGGYNQEDSVIVSQSFIDRGGFAGTFYRE 884
Query: 748 ETIDLSDDGNKVDRGQKLFRRN-KDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTN 806
E ++L D + L +N K + ++ DG VG ++ G+ K
Sbjct: 885 EKVELESDIESFGKPDPLITKNLKPGANYEKLV--DGFVPVGTVVKKGDIIIGKVAKIRG 942
Query: 807 SWRTNSRKGSESVFVDYVAVDMKNSKNLPQKAN------IRFRHTRNPIIGDKFSSRHGQ 860
++ SV + + ++ P N +R R+ RN IGDK SSR G
Sbjct: 943 EKDELNKYIDRSVMYGFDEPAVVDAVMRPHGPNDEIFGLMRLRYERNLNIGDKMSSRSGN 1002
Query: 861 KGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAA 907
KG+ + P DMPF+ G++PDLI+NPH+ PSRMT ++E+
Sbjct: 1003 KGIAALALPTSDMPFTE-DGLQPDLIVNPHSHPSRMTNGQMIETTVG 1048
Score = 36.2 bits (82), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 36/87 (41%), Gaps = 7/87 (8%)
Query: 36 DHCRQAKISYTG--KLMADVEF--QYLDAGSPVVRER---FNFGQFPVMLKTRRCHLQGA 88
+ R +SY+G L A+V Y + V R F FP+M + RCH
Sbjct: 115 NKARLCGLSYSGPVNLAAEVILTAHYSNGRQEVKRASIPPFQVSTFPIMRGSNRCHTHHL 174
Query: 89 DSQKLVSLKEEAAEMGGYFILNGLERV 115
+ E+ E GGYFI G E V
Sbjct: 175 SKTAKKEIGEDPNEPGGYFIARGGEWV 201
>sp|P42487|RPB2_ASFB7 DNA-directed RNA polymerase subunit 2 OS=African swine fever virus
(strain Badajoz 1971 Vero-adapted) GN=Ba71V-053 PE=3 SV=1
Length = 1242
Score = 130 bits (327), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 87/287 (30%), Positives = 142/287 (49%), Gaps = 15/287 (5%)
Query: 628 THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
TH ++ P +L + A ++PY++ Q R Y+ +QT G+ + +R D +
Sbjct: 770 THVDV-PQAILGLAALVSPYANCTQPARVTYETNQGRQTGGWYCFSWPYRVDMNRFFQFY 828
Query: 688 PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
+ P+V+T + Y I P G N IVA + Y GY+ ED++I+++S +DRG G Y+
Sbjct: 829 NEMPLVKTIAHN-YVI---PNGLNTIVAYMIYGGYNQEDSVIVSQSFIDRGGFAGTFYRE 884
Query: 748 ETIDLSDDGNKVDRGQKLFRRN-KDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTN 806
E ++L D + L +N K + ++ DG VG ++ G+ K
Sbjct: 885 EKVELESDIESFGKPDPLITKNLKPGANYEKLV--DGFVPVGTVVKKGDIIIGKVAKIRG 942
Query: 807 SWRTNSRKGSESVFVDYVAVDMKNSKNLPQKAN------IRFRHTRNPIIGDKFSSRHGQ 860
++ SV + + ++ P N +R R+ RN IGDK SSR G
Sbjct: 943 EKDELNKYIDRSVMYGFDEPAVVDAVMRPHGPNDEIFGLMRLRYERNLNIGDKMSSRSGN 1002
Query: 861 KGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAA 907
KG+ + P DMPF+ G++PDLI+NPH+ PSRMT ++E+
Sbjct: 1003 KGIAALALPTSDMPFTE-DGLQPDLIVNPHSHPSRMTNGQMIETTVG 1048
Score = 36.2 bits (82), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 36/87 (41%), Gaps = 7/87 (8%)
Query: 36 DHCRQAKISYTG--KLMADVEF--QYLDAGSPVVRER---FNFGQFPVMLKTRRCHLQGA 88
+ R +SY+G L A+V Y + V R F FP+M + RCH
Sbjct: 115 NKARLCGLSYSGPVNLAAEVILTAHYSNGRQEVKRASIPPFQVSTFPIMRGSNRCHTHHL 174
Query: 89 DSQKLVSLKEEAAEMGGYFILNGLERV 115
+ E+ E GGYFI G E V
Sbjct: 175 SKTAKKEIGEDPNEPGGYFIARGGEWV 201
>sp|P0C8K3|RPB2_ASFM2 DNA-directed RNA polymerase subunit 2 OS=African swine fever virus
(isolate Tick/Malawi/Lil 20-1/1983) GN=Mal-061 PE=3 SV=1
Length = 1242
Score = 130 bits (327), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 87/287 (30%), Positives = 142/287 (49%), Gaps = 15/287 (5%)
Query: 628 THEEIHPTGMLSVVANLTPYSDHNQSPRNMYQCQMAKQTMGFSVQALKFRADQKLYHLQT 687
TH ++ P +L + A ++PY++ Q R Y+ +QT G+ + +R D +
Sbjct: 770 THVDV-PQAILGLAALVSPYANCTQPARVTYETNQGRQTGGWYCFSWPYRVDMNRFFQFY 828
Query: 688 PQTPIVRTNTYTKYGIDEYPTGTNAIVAVLAYTGYDMEDAMILNKSSVDRGMCHGQIYQT 747
+ P+V+T + Y I P G N IVA + Y GY+ ED++I+++S +DRG G Y+
Sbjct: 829 NEMPLVKTIAHN-YVI---PNGLNTIVAYMIYGGYNQEDSVIVSQSFIDRGGFAGTFYRE 884
Query: 748 ETIDLSDDGNKVDRGQKLFRRN-KDAKSLHSVIDSDGLPYVGQMIHPGEPYCSIYDKTTN 806
E ++L D + L +N K + ++ DG VG ++ G+ K
Sbjct: 885 EKVELESDIESFGKPDPLITKNLKPGANYEKLV--DGFVPVGTVVKKGDIIIGKVAKIRG 942
Query: 807 SWRTNSRKGSESVFVDYVAVDMKNSKNLPQKAN------IRFRHTRNPIIGDKFSSRHGQ 860
++ SV + + ++ P N +R R+ RN IGDK SSR G
Sbjct: 943 EKDELNKYIDRSVMYGFDEPAVVDAVMRPHGPNDEIFGLMRLRYERNLNIGDKMSSRSGN 1002
Query: 861 KGVCSQLWPDIDMPFSGVTGMRPDLIINPHAFPSRMTIAMLLESVAA 907
KG+ + P DMPF+ G++PDLI+NPH+ PSRMT ++E+
Sbjct: 1003 KGIAALALPTSDMPFTE-DGLQPDLIVNPHSHPSRMTNGQMIETTVG 1048
Score = 35.4 bits (80), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 36/87 (41%), Gaps = 7/87 (8%)
Query: 36 DHCRQAKISYTG--KLMADVEF--QYLDAGSPVVRER---FNFGQFPVMLKTRRCHLQGA 88
+ R +SY+G L A+V Y + V R F FP+M + RCH
Sbjct: 115 NKARLCGLSYSGPVNLAAEVILTAHYSNGRQEVKRASIPPFQVSTFPIMRGSNRCHTYHL 174
Query: 89 DSQKLVSLKEEAAEMGGYFILNGLERV 115
+ E+ E GGYFI G E V
Sbjct: 175 SKTAKKEIGEDPNEPGGYFIARGGEWV 201
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.137 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 342,134,986
Number of Sequences: 539616
Number of extensions: 15036931
Number of successful extensions: 37218
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 914
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 31946
Number of HSP's gapped (non-prelim): 3906
length of query: 910
length of database: 191,569,459
effective HSP length: 127
effective length of query: 783
effective length of database: 123,038,227
effective search space: 96338931741
effective search space used: 96338931741
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 66 (30.0 bits)