BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002546
(909 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1T5C|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
pdb|1T5C|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
Length = 349
Score = 192 bits (489), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 112/247 (45%), Positives = 151/247 (61%), Gaps = 16/247 (6%)
Query: 2 IGITEYTMSDIYDYIEKHKEREFVLKFSAMEIYNESVRDLLSA--DTSPLRLLDDPERGT 59
+G+ + DI+ I+K +REF+L+ S MEIYNE++ DLL PL + +D R
Sbjct: 102 LGVIPRAIHDIFQKIKKFPDREFLLRVSYMEIYNETITDLLCGTQKMKPLIIREDVNRNV 161
Query: 60 IVEKLTEETLKDWNHLKELLSTCEAQRQIGETSLNETSSRSHQILRLTVES------SAC 113
V LTEE + + ++ E R GET +N+ SSRSH I R+ +ES S C
Sbjct: 162 YVADLTEEVVYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKGEPSNC 221
Query: 114 EFIGNDPSSLTATVNFVDLAGSERASQALSAGTRLKEGCHINRSLLTLGTVIRKLSKGR- 172
E S + +N VDLAGSERA+Q +AG RLKEGC+INRSL LG VI+KLS G+
Sbjct: 222 E-----GSVKVSHLNLVDLAGSERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDGQV 276
Query: 173 NGHVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAKEVTTNAQV 232
G + +RDSKLTRILQ+SLGGNA+T IICT++P +++ L FAS AK + V
Sbjct: 277 GGFINYRDSKLTRILQNSLGGNAKTRIICTITPV--SFDETLTALQFASTAKYMKNTPYV 334
Query: 233 NIVMSDK 239
N V +D+
Sbjct: 335 NEVSTDE 341
>pdb|3B6U|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
pdb|3B6U|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
Length = 372
Score = 171 bits (432), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 94/245 (38%), Positives = 146/245 (59%), Gaps = 3/245 (1%)
Query: 3 GITEYTMSDIYDYIEKHKEREFVLKFSAMEIYNESVRDLLSAD-TSPLRLLDDPERGTIV 61
G+ + I+ +I + + ++++++ S +EIY E +RDLLS D T L L + P+ G V
Sbjct: 130 GVIPNSFDHIFTHISRSQNQQYLVRASYLEIYQEEIRDLLSKDQTKRLELKERPDTGVYV 189
Query: 62 EKLTEETLKDWNHLKELLSTCEAQRQIGETSLNETSSRSHQILRLTVESSACEFIGNDPS 121
+ L+ K ++ +++ R +G T++NE SSRSH I +T+E S G +
Sbjct: 190 KDLSSFVTKSVKEIEHVMNVGNQNRSVGATNMNEHSSRSHAIFVITIECSEVGLDGENHI 249
Query: 122 SLTATVNFVDLAGSERASQALSAGTRLKEGCHINRSLLTLGTVIRKLSKGRNGHVPFRDS 181
+ +N VDLAGSER ++ + G RLKE IN SL LG VI L G++ H+P+RDS
Sbjct: 250 RV-GKLNLVDLAGSERQAKTGAQGERLKEATKINLSLSALGNVISALVDGKSTHIPYRDS 308
Query: 182 KLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAKEVTTNAQVNIVMSDKAL 241
KLTR+LQ SLGGNA+T ++ + PA +VE++ TL +A+ AK + +VN D AL
Sbjct: 309 KLTRLLQDSLGGNAKTVMVANVGPASYNVEETLTTLRYANRAKNIKNKPRVNEDPKD-AL 367
Query: 242 VKHLQ 246
++ Q
Sbjct: 368 LREFQ 372
>pdb|4AQV|C Chain C, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian
Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom
Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain
In The Ampppnp State.
pdb|4AQW|C Chain C, Model Of Human Kinesin-5 Motor Domain (1ii6, 3hqd) And
Mammalian Tubulin Heterodimer (1jff) Docked Into The
9.5- Angstrom Cryo-em Map Of Microtubule-bound Kinesin-5
Motor Domain In The Rigor State
Length = 373
Score = 153 bits (386), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 95/238 (39%), Positives = 143/238 (60%), Gaps = 8/238 (3%)
Query: 1 MIGITEYTMSDIYDYIEKHKEREFVLKFSAMEIYNESVRDLL--SADTSP-LRLLDDP-- 55
+ GI T+ I++ + + EF +K S +EIYNE + DLL S+D S L++ DDP
Sbjct: 132 LAGIIPRTLHQIFEKLTDNGT-EFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRN 190
Query: 56 ERGTIVEKLTEETLKDWNHLKELLSTCEAQRQIGETSLNETSSRSHQILRLTVESSACEF 115
+RG I++ L E T+ + + + ++L A+R T +N SSRSH + +T+
Sbjct: 191 KRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTI 250
Query: 116 IGNDPSSLTATVNFVDLAGSERASQALSAGTRLKEGCHINRSLLTLGTVIRKLSKGRNGH 175
G + + +N VDLAGSE ++ + R +E +IN+SLLTLG VI L + R H
Sbjct: 251 DGEELVKI-GKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVE-RTPH 308
Query: 176 VPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAKEVTTNAQVN 233
VP+R+SKLTRILQ SLGG RT+II T+SPA ++E++ +TL +A AK + +VN
Sbjct: 309 VPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVN 366
>pdb|4AP0|A Chain A, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|B Chain B, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|C Chain C, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|D Chain D, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
Length = 370
Score = 152 bits (383), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 95/238 (39%), Positives = 143/238 (60%), Gaps = 8/238 (3%)
Query: 1 MIGITEYTMSDIYDYIEKHKEREFVLKFSAMEIYNESVRDLL--SADTSP-LRLLDDP-- 55
+ GI T+ I++ + + EF +K S +EIYNE + DLL S+D S L++ DDP
Sbjct: 134 LAGIIPRTLHQIFEKLTDNGT-EFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRN 192
Query: 56 ERGTIVEKLTEETLKDWNHLKELLSTCEAQRQIGETSLNETSSRSHQILRLTVESSACEF 115
+RG I++ L E T+ + + + ++L A+R T +N SSRSH + +T+
Sbjct: 193 KRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTI 252
Query: 116 IGNDPSSLTATVNFVDLAGSERASQALSAGTRLKEGCHINRSLLTLGTVIRKLSKGRNGH 175
G + + +N VDLAGSE ++ + R +E +IN+SLLTLG VI L + R H
Sbjct: 253 DGEELVKI-GKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVE-RTPH 310
Query: 176 VPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAKEVTTNAQVN 233
VP+R+SKLTRILQ SLGG RT+II T+SPA ++E++ +TL +A AK + +VN
Sbjct: 311 VPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVN 368
>pdb|4A1Z|A Chain A, Eg5-1
pdb|4A1Z|B Chain B, Eg5-1
Length = 368
Score = 152 bits (383), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 95/238 (39%), Positives = 143/238 (60%), Gaps = 8/238 (3%)
Query: 1 MIGITEYTMSDIYDYIEKHKEREFVLKFSAMEIYNESVRDLL--SADTSP-LRLLDDP-- 55
+ GI T+ I++ + + EF +K S +EIYNE + DLL S+D S L++ DDP
Sbjct: 132 LAGIIPRTLHQIFEKLTDNGT-EFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRN 190
Query: 56 ERGTIVEKLTEETLKDWNHLKELLSTCEAQRQIGETSLNETSSRSHQILRLTVESSACEF 115
+RG I++ L E T+ + + + ++L A+R T +N SSRSH + +T+
Sbjct: 191 KRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTI 250
Query: 116 IGNDPSSLTATVNFVDLAGSERASQALSAGTRLKEGCHINRSLLTLGTVIRKLSKGRNGH 175
G + + +N VDLAGSE ++ + R +E +IN+SLLTLG VI L + R H
Sbjct: 251 DGEELVKI-GKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVE-RTPH 308
Query: 176 VPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAKEVTTNAQVN 233
VP+R+SKLTRILQ SLGG RT+II T+SPA ++E++ +TL +A AK + +VN
Sbjct: 309 VPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVN 366
>pdb|1II6|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1II6|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1YRS|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|1YRS|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2FME|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2FME|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2GM1|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|D Chain D, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|E Chain E, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2G1Q|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2G1Q|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2PG2|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2PG2|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2UYI|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYI|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYM|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|2UYM|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|3K5E|A Chain A, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K5E|B Chain B, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K3B|A Chain A, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3K3B|B Chain B, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3L9H|A Chain A, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|3L9H|B Chain B, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|2X7C|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7C|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7D|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7D|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7E|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2X7E|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2WOG|A Chain A, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|B Chain B, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|C Chain C, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2X2R|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2XAE|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|4A50|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
2-amino-5-(3-methylphenyl)-5,5-diphenylpentanoic Acid
pdb|4A51|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|D Chain D, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|E Chain E, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|F Chain F, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|G Chain G, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A5Y|A Chain A, Eg5-Inhibitor Complex
pdb|4A5Y|B Chain B, Eg5-Inhibitor Complex
pdb|4A5Y|C Chain C, Eg5-Inhibitor Complex
Length = 368
Score = 152 bits (383), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 95/238 (39%), Positives = 143/238 (60%), Gaps = 8/238 (3%)
Query: 1 MIGITEYTMSDIYDYIEKHKEREFVLKFSAMEIYNESVRDLL--SADTSP-LRLLDDP-- 55
+ GI T+ I++ + + EF +K S +EIYNE + DLL S+D S L++ DDP
Sbjct: 132 LAGIIPRTLHQIFEKLTDNGT-EFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRN 190
Query: 56 ERGTIVEKLTEETLKDWNHLKELLSTCEAQRQIGETSLNETSSRSHQILRLTVESSACEF 115
+RG I++ L E T+ + + + ++L A+R T +N SSRSH + +T+
Sbjct: 191 KRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTI 250
Query: 116 IGNDPSSLTATVNFVDLAGSERASQALSAGTRLKEGCHINRSLLTLGTVIRKLSKGRNGH 175
G + + +N VDLAGSE ++ + R +E +IN+SLLTLG VI L + R H
Sbjct: 251 DGEELVKI-GKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVE-RTPH 308
Query: 176 VPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAKEVTTNAQVN 233
VP+R+SKLTRILQ SLGG RT+II T+SPA ++E++ +TL +A AK + +VN
Sbjct: 309 VPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVN 366
>pdb|1Q0B|A Chain A, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|1Q0B|B Chain B, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|2FKY|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FKY|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FL2|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL2|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL6|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2FL6|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2IEH|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2IEH|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2Q2Y|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Y|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Z|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|2Q2Z|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|3CJO|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 30
pdb|3CJO|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 30
Length = 367
Score = 152 bits (383), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 95/238 (39%), Positives = 143/238 (60%), Gaps = 8/238 (3%)
Query: 1 MIGITEYTMSDIYDYIEKHKEREFVLKFSAMEIYNESVRDLL--SADTSP-LRLLDDP-- 55
+ GI T+ I++ + + EF +K S +EIYNE + DLL S+D S L++ DDP
Sbjct: 131 LAGIIPRTLHQIFEKLTDNGT-EFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRN 189
Query: 56 ERGTIVEKLTEETLKDWNHLKELLSTCEAQRQIGETSLNETSSRSHQILRLTVESSACEF 115
+RG I++ L E T+ + + + ++L A+R T +N SSRSH + +T+
Sbjct: 190 KRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTI 249
Query: 116 IGNDPSSLTATVNFVDLAGSERASQALSAGTRLKEGCHINRSLLTLGTVIRKLSKGRNGH 175
G + + +N VDLAGSE ++ + R +E +IN+SLLTLG VI L + R H
Sbjct: 250 DGEELVKI-GKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVE-RTPH 307
Query: 176 VPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAKEVTTNAQVN 233
VP+R+SKLTRILQ SLGG RT+II T+SPA ++E++ +TL +A AK + +VN
Sbjct: 308 VPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVN 365
>pdb|4A28|A Chain A, Eg5-2
pdb|4A28|B Chain B, Eg5-2
Length = 368
Score = 152 bits (383), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 95/236 (40%), Positives = 142/236 (60%), Gaps = 8/236 (3%)
Query: 3 GITEYTMSDIYDYIEKHKEREFVLKFSAMEIYNESVRDLL--SADTSP-LRLLDDP--ER 57
GI T+ I++ + + EF +K S +EIYNE + DLL S+D S L++ DDP +R
Sbjct: 134 GIIPRTLHQIFEKLTDNGT-EFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKR 192
Query: 58 GTIVEKLTEETLKDWNHLKELLSTCEAQRQIGETSLNETSSRSHQILRLTVESSACEFIG 117
G I++ L E T+ + + + ++L A+R T +N SSRSH + +T+ G
Sbjct: 193 GVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDG 252
Query: 118 NDPSSLTATVNFVDLAGSERASQALSAGTRLKEGCHINRSLLTLGTVIRKLSKGRNGHVP 177
+ + +N VDLAGSE ++ + R +E +IN+SLLTLG VI L + R HVP
Sbjct: 253 EELVKI-GKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVE-RTPHVP 310
Query: 178 FRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAKEVTTNAQVN 233
+R+SKLTRILQ SLGG RT+II T+SPA ++E++ +TL +A AK + +VN
Sbjct: 311 YRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVN 366
>pdb|3HQD|A Chain A, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3HQD|B Chain B, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3KEN|A Chain A, Human Eg5 In Complex With S-Trityl-L-Cysteine
Length = 369
Score = 152 bits (383), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 95/238 (39%), Positives = 143/238 (60%), Gaps = 8/238 (3%)
Query: 1 MIGITEYTMSDIYDYIEKHKEREFVLKFSAMEIYNESVRDLL--SADTSP-LRLLDDP-- 55
+ GI T+ I++ + + EF +K S +EIYNE + DLL S+D S L++ DDP
Sbjct: 132 LAGIIPRTLHQIFEKLTDNGT-EFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRN 190
Query: 56 ERGTIVEKLTEETLKDWNHLKELLSTCEAQRQIGETSLNETSSRSHQILRLTVESSACEF 115
+RG I++ L E T+ + + + ++L A+R T +N SSRSH + +T+
Sbjct: 191 KRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTI 250
Query: 116 IGNDPSSLTATVNFVDLAGSERASQALSAGTRLKEGCHINRSLLTLGTVIRKLSKGRNGH 175
G + + +N VDLAGSE ++ + R +E +IN+SLLTLG VI L + R H
Sbjct: 251 DGEELVKI-GKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVE-RTPH 308
Query: 176 VPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAKEVTTNAQVN 233
VP+R+SKLTRILQ SLGG RT+II T+SPA ++E++ +TL +A AK + +VN
Sbjct: 309 VPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVN 366
>pdb|1X88|A Chain A, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
pdb|1X88|B Chain B, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
Length = 359
Score = 152 bits (383), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 95/238 (39%), Positives = 143/238 (60%), Gaps = 8/238 (3%)
Query: 1 MIGITEYTMSDIYDYIEKHKEREFVLKFSAMEIYNESVRDLL--SADTSP-LRLLDDP-- 55
+ GI T+ I++ + + EF +K S +EIYNE + DLL S+D S L++ DDP
Sbjct: 123 LAGIIPRTLHQIFEKLTDNGT-EFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRN 181
Query: 56 ERGTIVEKLTEETLKDWNHLKELLSTCEAQRQIGETSLNETSSRSHQILRLTVESSACEF 115
+RG I++ L E T+ + + + ++L A+R T +N SSRSH + +T+
Sbjct: 182 KRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTI 241
Query: 116 IGNDPSSLTATVNFVDLAGSERASQALSAGTRLKEGCHINRSLLTLGTVIRKLSKGRNGH 175
G + + +N VDLAGSE ++ + R +E +IN+SLLTLG VI L + R H
Sbjct: 242 DGEELVKI-GKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVE-RTPH 299
Query: 176 VPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAKEVTTNAQVN 233
VP+R+SKLTRILQ SLGG RT+II T+SPA ++E++ +TL +A AK + +VN
Sbjct: 300 VPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVN 357
>pdb|3B6V|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
pdb|3B6V|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
Length = 395
Score = 151 bits (382), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 93/256 (36%), Positives = 140/256 (54%), Gaps = 26/256 (10%)
Query: 3 GITEYTMSDIYDYIEKHKEREFVLKFSAMEIYNESVRDLLSADTSP-LRLLDDPERGTIV 61
G+ I+ +I + + ++++++ S +EIY E +RDLLS + L L ++PE G +
Sbjct: 130 GVIPNAFEHIFTHISRSQNQQYLVRASYLEIYQEEIRDLLSKEPGKRLELKENPETGVYI 189
Query: 62 EKLTEETLKDWNHLKELLSTCEAQRQIGETSLNETSSRSHQILRLTVESSACEFIGNDPS 121
+ L+ K+ ++ +++ R +G T +NE SSRSH I +TVE S G D
Sbjct: 190 KDLSSFVTKNVKEIEHVMNLGNQTRAVGSTHMNEVSSRSHAIFIITVECSERGSDGQDHI 249
Query: 122 SLTATVNFVDLAGSERASQAL--SAGT----------------------RLKEGCHINRS 157
+ +N VDLAGSER ++A +AG R KE IN S
Sbjct: 250 RV-GKLNLVDLAGSERQNKAGPNTAGGAATPSSGGGGGGGGSGGGAGGERPKEASKINLS 308
Query: 158 LLTLGTVIRKLSKGRNGHVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTL 217
L LG VI L+ R+ H+P+RDSKLTR+LQ SLGGNA+T ++ TL PA ++S +TL
Sbjct: 309 LSALGNVIAALAGNRSTHIPYRDSKLTRLLQDSLGGNAKTIMVATLGPASHSYDESLSTL 368
Query: 218 LFASCAKEVTTNAQVN 233
FA+ AK + +VN
Sbjct: 369 RFANRAKNIKNKPRVN 384
>pdb|2VVG|A Chain A, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
pdb|2VVG|B Chain B, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
Length = 350
Score = 149 bits (376), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 86/212 (40%), Positives = 126/212 (59%), Gaps = 4/212 (1%)
Query: 22 REFVLKFSAMEIYNESVRDLLSADTSPLRLLDDPERGTIVEKLTEETLKDWNHLKELLST 81
+ F++ S +E+YNE +RDL+ +T L L +D RG V+ L+ + L L+
Sbjct: 135 QNFLVIGSYLELYNEEIRDLIKNNTK-LPLKEDKTRGIYVDGLSMHRVTTAAELSALMDK 193
Query: 82 CEAQRQIGETSLNETSSRSHQILRLTVESSACEFIGNDPSSLTATVNFVDLAGSERASQA 141
A R + T +N+TSSRSH I + +E S E I N +N VDLAGSER S+
Sbjct: 194 GFANRHVAATQMNDTSSRSHSIFMVRIECS--EVIENKEVIRVGKLNLVDLAGSERQSKT 251
Query: 142 LSAGTRLKEGCHINRSLLTLGTVIRKLSKGRNGHVPFRDSKLTRILQSSLGGNARTAIIC 201
+ G L EG IN SL LG VI KL +G H+P+RDSKLTR+LQ SLGGN++T +
Sbjct: 252 GATGETLVEGAKINLSLSALGLVISKLVEGAT-HIPYRDSKLTRLLQDSLGGNSKTLMCA 310
Query: 202 TLSPARSHVEQSRNTLLFASCAKEVTTNAQVN 233
+SPA ++ +++ +TL +A AK++ ++N
Sbjct: 311 NISPASTNYDETMSTLRYADRAKQIKNKPRIN 342
>pdb|3GBJ|A Chain A, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|B Chain B, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|C Chain C, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
Length = 354
Score = 149 bits (376), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 84/215 (39%), Positives = 133/215 (61%), Gaps = 7/215 (3%)
Query: 17 EKHKEREFVLKFSAMEIYNESVRDLLSADTS--PLRLLDDPERGTIVEKLTEETLKDWNH 74
E+++E+ F ++ S MEIYNE VRDLL S L++ + G V+ L++ + +
Sbjct: 134 EENEEQSFKVEVSYMEIYNEKVRDLLDPKGSRQTLKVREHSVLGPYVDGLSKLAVTSYKD 193
Query: 75 LKELLSTCEAQRQIGETSLNETSSRSHQILRLTVESSACEFIGNDPSSLTATVNFVDLAG 134
++ L+S R + T++NE SSRSH + ++T+ + + ++ VDLAG
Sbjct: 194 IESLMSEGNKSRTVAATNMNEESSRSHAVFKITLTHTLYDVKSGTSGEKVGKLSLVDLAG 253
Query: 135 SERASQALSAGTRLKEGCHINRSLLTLGTVIRKLS-----KGRNGHVPFRDSKLTRILQS 189
SERA++ +AG RLKEG +IN+SL TLG VI L+ K +N VP+RDS LT +L+
Sbjct: 254 SERATKTGAAGDRLKEGSNINKSLTTLGLVISALADQSAGKNKNKFVPYRDSVLTWLLKD 313
Query: 190 SLGGNARTAIICTLSPARSHVEQSRNTLLFASCAK 224
SLGGN++TA++ T+SPA + +++ +TL +A AK
Sbjct: 314 SLGGNSKTAMVATVSPAADNYDETLSTLRYADRAK 348
>pdb|2Y5W|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y5W|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y65|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|C Chain C, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|D Chain D, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
Length = 365
Score = 148 bits (374), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 90/232 (38%), Positives = 130/232 (56%), Gaps = 5/232 (2%)
Query: 3 GITEYTMSDIYDYIEKHK-EREFVLKFSAMEIYNESVRDLLSADTSPLRLLDDPERGTIV 61
GI ++DI+++I + EF +K S EIY + +RDLL L + +D R V
Sbjct: 113 GIIPRIVNDIFNHIYAMEVNLEFHIKVSYYEIYMDKIRDLLDVSKVNLSVHEDKNRVPYV 172
Query: 62 EKLTEETLKDWNHLKELLSTCEAQRQIGETSLNETSSRSHQILRLTVESSACEFIGNDPS 121
+ TE + + E++ ++ R I T++NE SSRSH + + V+ E +
Sbjct: 173 KGATERFVSSPEDVFEVIEEGKSNRHIAVTNMNEHSSRSHSVFLINVKQENLE----NQK 228
Query: 122 SLTATVNFVDLAGSERASQALSAGTRLKEGCHINRSLLTLGTVIRKLSKGRNGHVPFRDS 181
L+ + VDLAGSE+ S+ + GT L E +IN+SL LG VI L+ G H+P+RDS
Sbjct: 229 KLSGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSALGNVISALADGNKTHIPYRDS 288
Query: 182 KLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAKEVTTNAQVN 233
KLTRILQ SLGGNART I+ SPA + ++++TL F AK V VN
Sbjct: 289 KLTRILQESLGGNARTTIVICCSPASFNESETKSTLDFGRRAKTVKNVVCVN 340
>pdb|3LRE|A Chain A, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
pdb|3LRE|B Chain B, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
Length = 355
Score = 148 bits (374), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 88/227 (38%), Positives = 133/227 (58%), Gaps = 5/227 (2%)
Query: 3 GITEYTMSDIYDYIEKHKEREFV-LKFSAMEIYNESVRDLLSADTSPLRLLDDPERGTIV 61
G+ TM +Y +++ KE + S +E+YNE +RDLL ++ PL + +D ++G +V
Sbjct: 131 GVMYLTMLHLYKCMDEIKEEKICSTAVSYLEVYNEQIRDLL-VNSGPLAVREDTQKGVVV 189
Query: 62 EKLTEETLKDWNHLKELLSTCEAQRQIGETSLNETSSRSHQILRLTVESSACEFIGNDPS 121
LT K + LL R T +N TSSRSH + ++ + N
Sbjct: 190 HGLTLHQPKSSEEILHLLDNGNKNRTQHPTDMNATSSRSHAVFQIYLRQQDKTASINQNV 249
Query: 122 SLTATVNFVDLAGSERASQALSAGTRLKEGCHINRSLLTLGTVIRKL--SKGRNGHVPFR 179
+ A ++ +DLAGSERAS + + GTR EG +INRSLL LG VI L SK +N H+P+R
Sbjct: 250 RI-AKMSLIDLAGSERASTSGAKGTRFVEGTNINRSLLALGNVINALADSKRKNQHIPYR 308
Query: 180 DSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAKEV 226
+SKLTR+L+ SLGGN +T +I +SP+ + + NTL +A+ AK++
Sbjct: 309 NSKLTRLLKDSLGGNCQTIMIAAVSPSSVFYDDTYNTLKYANRAKDI 355
>pdb|3ZCW|A Chain A, Eg5 - New Allosteric Binding Site
Length = 348
Score = 148 bits (374), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 93/231 (40%), Positives = 140/231 (60%), Gaps = 8/231 (3%)
Query: 1 MIGITEYTMSDIYDYIEKHKEREFVLKFSAMEIYNESVRDLL--SADTSP-LRLLDDP-- 55
+ GI T+ I++ + + EF +K S +EIYNE + DLL S+D S L++ DDP
Sbjct: 117 LAGIIPRTLHQIFEKLTDNGT-EFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRN 175
Query: 56 ERGTIVEKLTEETLKDWNHLKELLSTCEAQRQIGETSLNETSSRSHQILRLTVESSACEF 115
+RG I++ L E T+ + + + ++L A+R T +N SSRSH + +T+
Sbjct: 176 KRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTI 235
Query: 116 IGNDPSSLTATVNFVDLAGSERASQALSAGTRLKEGCHINRSLLTLGTVIRKLSKGRNGH 175
G + + +N VDLAGSE ++ + R +E +IN+SLLTLG VI L + R H
Sbjct: 236 DGEELVKI-GKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVE-RTPH 293
Query: 176 VPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAKEV 226
VP+R+SKLTRILQ SLGG RT+II T+SPA ++E++ +TL +A AK +
Sbjct: 294 VPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 344
>pdb|1GOJ|A Chain A, Structure Of A Fast Kinesin: Implications For Atpase
Mechanism And Interactions With Microtubules
Length = 355
Score = 147 bits (370), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 84/225 (37%), Positives = 128/225 (56%), Gaps = 4/225 (1%)
Query: 23 EFVLKFSAMEIYNESVRDLLSADTSPLRLLDDPERGTIVEKLTEETLKDWNHLKELLSTC 82
E+ ++ S MEIY E +RDLL+ L + ++ RG V+ L E + + E++
Sbjct: 131 EYTVRVSYMEIYMERIRDLLAPQNDNLPVHEEKNRGVYVKGLLEIYVSSVQEVYEVMRRG 190
Query: 83 EAQRQIGETSLNETSSRSHQILRLTVESSACEFIGNDPSSLTATVNFVDLAGSERASQAL 142
R + T++N+ SSRSH I +T+ E S+ + + VDLAGSE+ +
Sbjct: 191 GNARAVAATNMNQESSRSHSIFVITITQKNVE----TGSAKSGQLFLVDLAGSEKVGKTG 246
Query: 143 SAGTRLKEGCHINRSLLTLGTVIRKLSKGRNGHVPFRDSKLTRILQSSLGGNARTAIICT 202
++G L+E IN+SL LG VI L+ G++ HVP+RDSKLTRILQ SLGGN+RT +I
Sbjct: 247 ASGQTLEEAKKINKSLSALGMVINALTDGKSSHVPYRDSKLTRILQESLGGNSRTTLIIN 306
Query: 203 LSPARSHVEQSRNTLLFASCAKEVTTNAQVNIVMSDKALVKHLQR 247
SP+ + ++ +TL F AK + A+VN +S L + L +
Sbjct: 307 CSPSSYNDAETLSTLRFGMRAKSIKNKAKVNAELSPAELKQMLAK 351
>pdb|1IA0|K Chain K, Kif1a Head-Microtubule Complex Structure In Atp-Form
pdb|2HXF|C Chain C, Kif1a Head-Microtubule Complex Structure In Amppnp-Form
pdb|2HXH|C Chain C, Kif1a Head-Microtubule Complex Structure In Adp-Form
Length = 394
Score = 145 bits (367), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 83/223 (37%), Positives = 132/223 (59%), Gaps = 12/223 (5%)
Query: 24 FVLKFSAMEIYNESVRDLLS-ADTSPLRLLDDPERGTIVEKLTEETLKDWNHLKELLSTC 82
+ ++ S MEIY E VRDLL+ + LR+ + P G VE L++ + +N +++L+ +
Sbjct: 156 YSVEVSYMEIYCERVRDLLNPKNKGNLRVREHPLLGPYVEDLSKLAVTSYNDIQDLMDSG 215
Query: 83 EAQRQIGETSLNETSSRSHQILRLTVESSACEFIGNDPSSLTATVNFVDLAGSERASQAL 142
R + T++NETSSRSH + + + N + + ++ VDLAGSERA
Sbjct: 216 NKARTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTEKVSKISLVDLAGSERADSTG 275
Query: 143 SAGTRLKEGCHINRSLLTLGTVIRKLSKGRNG-----------HVPFRDSKLTRILQSSL 191
+ GTRLKEG +IN+SL TLG VI L++ +G +P+RDS LT +L+ +L
Sbjct: 276 AKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENL 335
Query: 192 GGNARTAIICTLSPARSHVEQSRNTLLFASCAKEVTTNAQVNI 234
GGN+RTA++ LSPA + +++ +TL +A AK++ VN+
Sbjct: 336 GGNSRTAMVAALSPADINYDETLSTLRYADRAKQIRNTVSVNL 378
>pdb|2WBE|C Chain C, Kinesin-5-Tubulin Complex With Amppnp
Length = 373
Score = 145 bits (367), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 91/236 (38%), Positives = 139/236 (58%), Gaps = 7/236 (2%)
Query: 2 IGITEYTMSDIYDYIEKHKEREFVLKFSAMEIYNESVRDLLSAD-TSPLRLLDDPER--G 58
IGI +S ++D + + E E+ ++ S +E+YNE + DLLS D T+ +R+ DD +
Sbjct: 136 IGIIPRALSHLFDEL-RMMEVEYTMRISYLELYNEELCDLLSTDDTTKIRIFDDSTKKGS 194
Query: 59 TIVEKLTEETLKDWNHLKELLSTCEAQRQIGETSLNETSSRSHQILRLTVESSACEFIGN 118
I++ L E + + + +LL + +R+ T +N SSRSH + + V G
Sbjct: 195 VIIQGLEEIPVHSKDDVYKLLEKGKERRKTATTLMNAQSSRSHTVFSIVVHIRENGIEGE 254
Query: 119 DPSSLTATVNFVDLAGSERASQALS-AGTRLKEGCHINRSLLTLGTVIRKLSKGRNGHVP 177
D + +N VDLAGSE S+A + G R++E +IN+SLLTLG VI L R HVP
Sbjct: 255 DMLKI-GKLNLVDLAGSENVSKAGNEKGIRVRETVNINQSLLTLGRVITALVD-RAPHVP 312
Query: 178 FRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAKEVTTNAQVN 233
+R+SKLTR+LQ SLGG +T+II T+SP +E++ +TL +A AK + +VN
Sbjct: 313 YRESKLTRLLQESLGGRTKTSIIATISPGHKDIEETLSTLEYAHRAKNIQNKPEVN 368
>pdb|1I5S|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Adp
Length = 367
Score = 145 bits (366), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 83/222 (37%), Positives = 131/222 (59%), Gaps = 12/222 (5%)
Query: 24 FVLKFSAMEIYNESVRDLLS-ADTSPLRLLDDPERGTIVEKLTEETLKDWNHLKELLSTC 82
+ ++ S MEIY E VRDLL+ + LR+ + P G VE L++ + +N +++L+ +
Sbjct: 140 YSVEVSYMEIYCERVRDLLNPKNKGNLRVREHPLLGPYVEDLSKLAVTSYNDIQDLMDSG 199
Query: 83 EAQRQIGETSLNETSSRSHQILRLTVESSACEFIGNDPSSLTATVNFVDLAGSERASQAL 142
R + T++NETSSRSH + + + N + + ++ VDLAGSERA
Sbjct: 200 NKARTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTEKVSKISLVDLAGSERADSTG 259
Query: 143 SAGTRLKEGCHINRSLLTLGTVIRKLSKGRNG-----------HVPFRDSKLTRILQSSL 191
+ GTRLKEG +IN+SL TLG VI L++ +G +P+RDS LT +L+ +L
Sbjct: 260 AKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENL 319
Query: 192 GGNARTAIICTLSPARSHVEQSRNTLLFASCAKEVTTNAQVN 233
GGN+RTA++ LSPA + +++ +TL +A AK++ VN
Sbjct: 320 GGNSRTAMVAALSPADINYDETLSTLRYADRAKQIRNTVSVN 361
>pdb|1I6I|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppcp
Length = 366
Score = 145 bits (365), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 83/222 (37%), Positives = 131/222 (59%), Gaps = 12/222 (5%)
Query: 24 FVLKFSAMEIYNESVRDLLS-ADTSPLRLLDDPERGTIVEKLTEETLKDWNHLKELLSTC 82
+ ++ S MEIY E VRDLL+ + LR+ + P G VE L++ + +N +++L+ +
Sbjct: 140 YSVEVSYMEIYCERVRDLLNPKNKGNLRVREHPLLGPYVEDLSKLAVTSYNDIQDLMDSG 199
Query: 83 EAQRQIGETSLNETSSRSHQILRLTVESSACEFIGNDPSSLTATVNFVDLAGSERASQAL 142
R + T++NETSSRSH + + + N + + ++ VDLAGSERA
Sbjct: 200 NKARTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTEKVSKISLVDLAGSERADSTG 259
Query: 143 SAGTRLKEGCHINRSLLTLGTVIRKLSKGRNG-----------HVPFRDSKLTRILQSSL 191
+ GTRLKEG +IN+SL TLG VI L++ +G +P+RDS LT +L+ +L
Sbjct: 260 AKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENL 319
Query: 192 GGNARTAIICTLSPARSHVEQSRNTLLFASCAKEVTTNAQVN 233
GGN+RTA++ LSPA + +++ +TL +A AK++ VN
Sbjct: 320 GGNSRTAMVAALSPADINYDETLSTLRYADRAKQIRNTVSVN 361
>pdb|1VFV|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFW|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFX|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-mg-alfx
pdb|1VFZ|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-Mg-Vo4
pdb|2ZFI|A Chain A, Crystal Structure Of The Kif1a Motor Domain Before Mg
Release
pdb|2ZFJ|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-1
pdb|2ZFK|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-2
pdb|2ZFL|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-3
pdb|2ZFM|A Chain A, Crystal Structure Of The Kif1a Motor Domain After Mg
Release
Length = 366
Score = 144 bits (364), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 83/222 (37%), Positives = 131/222 (59%), Gaps = 12/222 (5%)
Query: 24 FVLKFSAMEIYNESVRDLLS-ADTSPLRLLDDPERGTIVEKLTEETLKDWNHLKELLSTC 82
+ ++ S MEIY E VRDLL+ + LR+ + P G VE L++ + +N +++L+ +
Sbjct: 140 YSVEVSYMEIYCERVRDLLNPKNKGNLRVREHPLLGPYVEDLSKLAVTSYNDIQDLMDSG 199
Query: 83 EAQRQIGETSLNETSSRSHQILRLTVESSACEFIGNDPSSLTATVNFVDLAGSERASQAL 142
R + T++NETSSRSH + + + N + + ++ VDLAGSERA
Sbjct: 200 NKPRTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTEKVSKISLVDLAGSERADSTG 259
Query: 143 SAGTRLKEGCHINRSLLTLGTVIRKLSKGRNG-----------HVPFRDSKLTRILQSSL 191
+ GTRLKEG +IN+SL TLG VI L++ +G +P+RDS LT +L+ +L
Sbjct: 260 AKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENL 319
Query: 192 GGNARTAIICTLSPARSHVEQSRNTLLFASCAKEVTTNAQVN 233
GGN+RTA++ LSPA + +++ +TL +A AK++ VN
Sbjct: 320 GGNSRTAMVAALSPADINYDETLSTLRYADRAKQIRNTVSVN 361
>pdb|4ATX|C Chain C, Rigor Kinesin Motor Domain With An Ordered Neck-Linker,
Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em
Map Of Doublecortin-Microtubules Decorated With Kinesin
Length = 340
Score = 144 bits (363), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 86/234 (36%), Positives = 131/234 (55%), Gaps = 6/234 (2%)
Query: 2 IGITEYTMSDIYDYIEKHKER-EFVLKFSAMEIYNESVRDLLSADTSPLRLLDDPERGTI 60
+GI + DI++YI E EF +K S EIY + +RDLL + L + +D R
Sbjct: 105 MGIIPRIVQDIFNYIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDKNRVPY 164
Query: 61 VEKLTEETLKDWNHLKELLSTCEAQRQIGETSLNETSSRSHQILRLTVESSACEFIGNDP 120
V+ TE + + + + + ++ R + T++NE SSRSH I + V+ +
Sbjct: 165 VKGCTERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQ----TE 220
Query: 121 SSLTATVNFVDLAGSERASQALSAGTRLKEGCHINRSLLTLGTVIRKLSKGRNGHVPFRD 180
L+ + VDLAGSE+ S+ + G L E +IN+SL LG VI L++G +VP+RD
Sbjct: 221 QKLSGKLYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGST-YVPYRD 279
Query: 181 SKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAKEVTTNAQVNI 234
SK+TRILQ SLGGN RT I+ SP+ + ++++TLLF AK + VN+
Sbjct: 280 SKMTRILQDSLGGNCRTTIVICCSPSSYNESETKSTLLFGQRAKTIKNTVCVNV 333
>pdb|1MKJ|A Chain A, Human Kinesin Motor Domain With Docked Neck Linker
Length = 349
Score = 144 bits (363), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 86/234 (36%), Positives = 131/234 (55%), Gaps = 6/234 (2%)
Query: 2 IGITEYTMSDIYDYIEKHKER-EFVLKFSAMEIYNESVRDLLSADTSPLRLLDDPERGTI 60
+GI + DI++YI E EF +K S EIY + +RDLL + L + +D R
Sbjct: 105 MGIIPRIVQDIFNYIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDKNRVPY 164
Query: 61 VEKLTEETLKDWNHLKELLSTCEAQRQIGETSLNETSSRSHQILRLTVESSACEFIGNDP 120
V+ TE + + + + + ++ R + T++NE SSRSH I + V+ +
Sbjct: 165 VKGCTERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQ----TE 220
Query: 121 SSLTATVNFVDLAGSERASQALSAGTRLKEGCHINRSLLTLGTVIRKLSKGRNGHVPFRD 180
L+ + VDLAGSE+ S+ + G L E +IN+SL LG VI L++G +VP+RD
Sbjct: 221 QKLSGKLYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGST-YVPYRD 279
Query: 181 SKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAKEVTTNAQVNI 234
SK+TRILQ SLGGN RT I+ SP+ + ++++TLLF AK + VN+
Sbjct: 280 SKMTRILQDSLGGNCRTTIVICCSPSSYNESETKSTLLFGQRAKTIKNTVCVNV 333
>pdb|4A14|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 142 bits (358), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 96/238 (40%), Positives = 134/238 (56%), Gaps = 24/238 (10%)
Query: 3 GITEYTMSDIYDYIEKHKEREFVLKFSAMEIYNESVRDLLSADTSP--LRLLDDPERGTI 60
GI M++ + I+++ + ++ S +E+Y E RDLL T+ ++L +D ERG +
Sbjct: 115 GIVPRAMAEAFKLIDENDLLDCLVHVSYLEVYKEEFRDLLEVGTASRDIQLRED-ERGNV 173
Query: 61 VEKLTEETLKDWNHLKELLSTCE---AQRQIGETSLNETSSRSHQILRLTVESSACEFIG 117
V +E D L E+LS E A R G T LN SSRSH + +T+E G
Sbjct: 174 VLCGVKEV--DVEGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLEQR-----G 226
Query: 118 NDPSSL---------TATVNFVDLAGSERASQALSAGTRLKEGCHINRSLLTLGTVIRKL 168
PS L + +FVDLAGSER + S G RLKE IN SLL LG VI L
Sbjct: 227 RAPSRLPRPAPGQLLVSKFHFVDLAGSERVLKTGSTGERLKESIQINSSLLALGNVISAL 286
Query: 169 S--KGRNGHVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAK 224
+ R H+P+RDSK+TRIL+ SLGGNA+T +I +SP+ S +++ NTL +AS A+
Sbjct: 287 GDPQRRGSHIPYRDSKITRILKDSLGGNAKTVMIACVSPSSSDFDETLNTLNYASRAQ 344
>pdb|1BG2|A Chain A, Human Ubiquitous Kinesin Motor Domain
pdb|2P4N|K Chain K, Human Monomeric Kinesin (1bg2) And Bovine Tubulin (1jff)
Docked Into The 9-Angstrom Cryo-Em Map Of
Nucleotide-Free Kinesin Complexed To The Microtubule
Length = 325
Score = 140 bits (354), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 84/226 (37%), Positives = 128/226 (56%), Gaps = 6/226 (2%)
Query: 2 IGITEYTMSDIYDYIEKHKER-EFVLKFSAMEIYNESVRDLLSADTSPLRLLDDPERGTI 60
+GI + DI++YI E EF +K S EIY + +RDLL + L + +D R
Sbjct: 105 MGIIPRIVQDIFNYIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDKNRVPY 164
Query: 61 VEKLTEETLKDWNHLKELLSTCEAQRQIGETSLNETSSRSHQILRLTVESSACEFIGNDP 120
V+ TE + + + + + ++ R + T++NE SSRSH I + V+ +
Sbjct: 165 VKGCTERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQ----TE 220
Query: 121 SSLTATVNFVDLAGSERASQALSAGTRLKEGCHINRSLLTLGTVIRKLSKGRNGHVPFRD 180
L+ + VDLAGSE+ S+ + G L E +IN+SL LG VI L++G +VP+RD
Sbjct: 221 QKLSGKLYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGST-YVPYRD 279
Query: 181 SKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAKEV 226
SK+TRILQ SLGGN RT I+ SP+ + ++++TLLF AK +
Sbjct: 280 SKMTRILQDSLGGNCRTTIVICCSPSSYNESETKSTLLFGQRAKTI 325
>pdb|1SDM|A Chain A, Crystal Structure Of Kinesin-Like Calmodulin Binding
Protein
pdb|3CNZ|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3CNZ|B Chain B, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|C Chain C, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
Length = 369
Score = 138 bits (347), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 86/247 (34%), Positives = 140/247 (56%), Gaps = 9/247 (3%)
Query: 3 GITEYTMSDIYDYIEKHKER-EFVLKFSAMEIYNESVRDLL---SADTSPLRLLDDPERG 58
G+T MS+++ ++K + F LK +E+Y +++ DLL A L + D +
Sbjct: 105 GLTPRAMSELFRIMKKDSNKFSFSLKAYMVELYQDTLVDLLLPKQAKRLKLDIKKDSKGM 164
Query: 59 TIVEKLTEETLKDWNHLKELLSTCEAQRQIGETSLNETSSRSHQILRLTVESSACEFIGN 118
VE +T ++ + LK ++ QR T +NE SSRSH I+ + +ES+ +
Sbjct: 165 VSVENVTVVSISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIESTNLQ---- 220
Query: 119 DPSSLTATVNFVDLAGSERASQALSAGTRLKEGCHINRSLLTLGTVIRKLSKGRNGHVPF 178
+ ++FVDLAGSER ++ SAG +LKE IN+SL LG VI LS G N H+P+
Sbjct: 221 TQAIARGKLSFVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVISALSSG-NQHIPY 279
Query: 179 RDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAKEVTTNAQVNIVMSD 238
R+ KLT ++ SLGGNA+T + +SPA S+++++ N+L +AS + + + N+ +
Sbjct: 280 RNHKLTMLMSDSLGGNAKTLMFVNISPAESNLDETHNSLTYASRVRSIVNDPSKNVSSKE 339
Query: 239 KALVKHL 245
A +K L
Sbjct: 340 VARLKKL 346
>pdb|3H4S|A Chain A, Structure Of The Complex Of A Mitotic Kinesin With Its
Calcium Binding Regulator
Length = 386
Score = 138 bits (347), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 87/245 (35%), Positives = 142/245 (57%), Gaps = 11/245 (4%)
Query: 3 GITEYTMSDIYDYIEKHKER-EFVLKFSAMEIYNESVRDLL---SADTSPLRLLDDPERG 58
G+T ++++ +++ +R F LK +E+Y +++ DLL SA L + D +
Sbjct: 113 GLTPRATKELFNILKRDSKRFSFSLKAYMVELYQDTLVDLLLPKSARRLKLEIKKDSKGM 172
Query: 59 TIVEKLTEETLKDWNHLKELLSTCEAQRQIGETSLNETSSRSHQILRLTVESSACEFIGN 118
VE +T + L+ +L +R + T++NE SSRSH IL + +ES +
Sbjct: 173 VFVENVTTIPISTLEELRMILERGSERRHVSGTNMNEESSRSHLILSVVIESIDLQ---- 228
Query: 119 DPSSLTATVNFVDLAGSERASQALSAGTRLKEGCHINRSLLTLGTVIRKLSKGRNGHVPF 178
S+ ++FVDLAGSER ++ SAG +LKE IN+SL LG VI LS G N H+P+
Sbjct: 229 TQSAARGKLSFVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVIGALSSG-NQHIPY 287
Query: 179 RDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAKEVTTNAQVNIVMSD 238
R+ KLT ++ SLGGNA+T + +SPA S+++++ N+LL+AS + + + +I S
Sbjct: 288 RNHKLTMLMSDSLGGNAKTLMFVNVSPAESNLDETYNSLLYASRVRTIVNDPSKHI--SS 345
Query: 239 KALVK 243
K +V+
Sbjct: 346 KEMVR 350
>pdb|2OWM|A Chain A, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|B Chain B, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|C Chain C, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|D Chain D, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
Length = 443
Score = 134 bits (336), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 88/263 (33%), Positives = 140/263 (53%), Gaps = 32/263 (12%)
Query: 3 GITEYTMSDIYDYIEKHKER----EFVLKFSAMEIYNESVRDLLSA---DTSP--LRLLD 53
G+ T D++ I ++ + +K S E+YNE VRDLL+ + P L++ +
Sbjct: 162 GLIPRTCEDLFQRIASAQDETPNISYNVKVSYFEVYNEHVRDLLAPVVPNKPPYYLKVRE 221
Query: 54 DPERGTIVEKLTEETLKDWNHLKELLSTCEAQRQIGETSLNETSSRSHQILRLTVESSAC 113
P G V+ LTE ++ + + + R + T +N+TSSRSH + + ++
Sbjct: 222 SPTEGPYVKDLTEVPVRGLEEIIRWMRIGDGSRTVASTKMNDTSSRSHAVFTIMLKQIHH 281
Query: 114 EFIGNDPSSLTATVNFVDLAGSERASQALSAGTRLKEGCHINRSLLTLGTVIRKLS---- 169
+ +D + ++ + VDLAGSERA + G RL+EG +IN+SL TLG VI L+
Sbjct: 282 DLETDDTTERSSRIRLVDLAGSERAKSTEATGQRLREGSNINKSLTTLGRVIAALADPKS 341
Query: 170 ------------KGR-----NGHVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQ 212
+GR N VP+RDS LT +L+ SLGGN++TA+I +SP + ++
Sbjct: 342 SASRPSSPVKSGRGRTPGPANSVVPYRDSVLTWLLKDSLGGNSKTAMIACISP--TDYDE 399
Query: 213 SRNTLLFASCAKEVTTNAQVNIV 235
+ +TL +A AK + T A VN V
Sbjct: 400 TLSTLRYADQAKRIRTRAVVNQV 422
>pdb|2H58|A Chain A, Crystal Structure Of The Kifc3 Motor Domain In Complex
With Adp
Length = 330
Score = 133 bits (334), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 84/228 (36%), Positives = 126/228 (55%), Gaps = 9/228 (3%)
Query: 3 GITEYTMSDIYDYI-EKHKEREFVLKFSAMEIYNESVRDLLSADTSP---LRLLDDPERG 58
GI + + ++ + EK + E+ + SA EIYNE +RDLL + +RL D
Sbjct: 106 GINQRALQLLFSEVQEKASDWEYTITVSAAEIYNEVLRDLLGKEPQEKLEIRLCPDGSGQ 165
Query: 59 TIVEKLTEETLKDWNHLKELLSTCEAQRQIGETSLNETSSRSHQILRLTVESSACEFIGN 118
V LTE ++ + + ++ R T+LNE SSRSH +L +TV C +
Sbjct: 166 LYVPGLTEFQVQSVDDINKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVRGVDC----S 221
Query: 119 DPSSLTATVNFVDLAGSERASQALSAGTRLKEGCHINRSLLTLGTVIRKLSKGRNGHVPF 178
T +N VDLAGSER ++ + G+RL+E HIN+SL LG VI L + R GHVPF
Sbjct: 222 TGLRTTGKLNLVDLAGSERVGKSGAEGSRLREAQHINKSLSALGDVIAAL-RSRQGHVPF 280
Query: 179 RDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAKEV 226
R+SKLT +LQ SL G+++T ++ +SP + ++ +L FA + V
Sbjct: 281 RNSKLTYLLQDSLSGDSKTLMVVQVSPVEKNTSETLYSLKFAERVRSV 328
>pdb|2XT3|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 132 bits (331), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 92/238 (38%), Positives = 132/238 (55%), Gaps = 24/238 (10%)
Query: 3 GITEYTMSDIYDYIEKHKEREFVLKFSAMEIYNESVRDLLSADTSP--LRLLDDPERGTI 60
GI M++ + I+++ + ++ S +E+Y E RDLL T+ ++L +D ERG +
Sbjct: 115 GIVPRAMAEAFKLIDENDLLDCLVHVSYLEVYKEEFRDLLEVGTASRDIQLRED-ERGNV 173
Query: 61 VEKLTEETLKDWNHLKELLSTCE---AQRQIGETSLNETSSRSHQILRLTVESSACEFIG 117
V +E D L E+LS E A R G T LN SSRSH + +T++ G
Sbjct: 174 VLCGVKEV--DVEGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLKQR-----G 226
Query: 118 NDPSSL---------TATVNFVDLAGSERASQALSAGTRLKEGCHINRSLLTLGTVIRKL 168
PS L + +FVDLAGSER + S G KE IN SLL LG VI L
Sbjct: 227 RAPSRLPRPAPGQLLVSKFHFVDLAGSERVLKTGSTGELRKESIQINSSLLALGNVISAL 286
Query: 169 S--KGRNGHVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAK 224
+ R ++P+RDSK+TRIL+ SLGGNA+T +I +SP+ S +++ NTL +AS A+
Sbjct: 287 GDPQRRGSNIPYRDSKITRILKDSLGGNAKTVMIACVSPSSSDFDETLNTLNYASRAQ 344
>pdb|3U06|A Chain A, Crystal Structure Of The Kinesin-14 Ncdg347d
pdb|3U06|B Chain B, Crystal Structure Of The Kinesin-14 Ncdg347d
Length = 412
Score = 121 bits (303), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 80/227 (35%), Positives = 125/227 (55%), Gaps = 19/227 (8%)
Query: 2 IGITEYTMSDIYDYIEKHKER--EFVLKFSAMEIYNESVRDLLSADTSPL--RLLDDPER 57
+G+ T+ ++D I ++ E+ +K + +EIYNE + DLLS + + R+ + +
Sbjct: 163 VGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKN 222
Query: 58 GTIVEKLTEETLKDWNHLKELLSTCEAQRQIGETSLNETSSRSHQILRLTVESSACEFIG 117
V +TEET+ D NHL+ L+ T + R T+ NE SSRSH + +L E IG
Sbjct: 223 DIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKL-------ELIG 275
Query: 118 NDPSSL---TATVNFVDLAGSERASQALSAGTRLKEGCHINRSLLTLGTVIRKLSKGRNG 174
++N VDLAGSE + TR+ E +INRSL L VI L + +
Sbjct: 276 RHAEKQEISVGSINLVDLAGSESPKTS----TRMTETKNINRSLSELTNVILALLQ-KQD 330
Query: 175 HVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFAS 221
H+P+R+SKLT +L SLGGN++T + +SP + ++S +L FA+
Sbjct: 331 HIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAA 377
>pdb|2NCD|A Chain A, Ncd (Non-Claret Disjunctional) Dimer From D. Melanogaster
Length = 420
Score = 121 bits (303), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 80/227 (35%), Positives = 125/227 (55%), Gaps = 19/227 (8%)
Query: 2 IGITEYTMSDIYDYIEKHKER--EFVLKFSAMEIYNESVRDLLSADTSPL--RLLDDPER 57
+G+ T+ ++D I ++ E+ +K + +EIYNE + DLLS + + R+ + +
Sbjct: 171 VGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKN 230
Query: 58 GTIVEKLTEETLKDWNHLKELLSTCEAQRQIGETSLNETSSRSHQILRLTVESSACEFIG 117
V +TEET+ D NHL+ L+ T + R T+ NE SSRSH + +L E IG
Sbjct: 231 DIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKL-------ELIG 283
Query: 118 NDPSSL---TATVNFVDLAGSERASQALSAGTRLKEGCHINRSLLTLGTVIRKLSKGRNG 174
++N VDLAGSE + TR+ E +INRSL L VI L + +
Sbjct: 284 RHAEKQEISVGSINLVDLAGSESPKTS----TRMTETKNINRSLSELTNVILALLQ-KQD 338
Query: 175 HVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFAS 221
H+P+R+SKLT +L SLGGN++T + +SP + ++S +L FA+
Sbjct: 339 HIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAA 385
>pdb|1CZ7|A Chain A, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|B Chain B, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|C Chain C, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|D Chain D, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
Length = 406
Score = 120 bits (302), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 80/227 (35%), Positives = 125/227 (55%), Gaps = 19/227 (8%)
Query: 2 IGITEYTMSDIYDYIEKHKER--EFVLKFSAMEIYNESVRDLLSADTSPL--RLLDDPER 57
+G+ T+ ++D I ++ E+ +K + +EIYNE + DLLS + + R+ + +
Sbjct: 157 VGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKN 216
Query: 58 GTIVEKLTEETLKDWNHLKELLSTCEAQRQIGETSLNETSSRSHQILRLTVESSACEFIG 117
V +TEET+ D NHL+ L+ T + R T+ NE SSRSH + +L E IG
Sbjct: 217 DIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKL-------ELIG 269
Query: 118 NDPSSL---TATVNFVDLAGSERASQALSAGTRLKEGCHINRSLLTLGTVIRKLSKGRNG 174
++N VDLAGSE + TR+ E +INRSL L VI L + +
Sbjct: 270 RHAEKQEISVGSINLVDLAGSESPKTS----TRMTETKNINRSLSELTNVILALLQ-KQD 324
Query: 175 HVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFAS 221
H+P+R+SKLT +L SLGGN++T + +SP + ++S +L FA+
Sbjct: 325 HIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAA 371
>pdb|3L1C|A Chain A, Kinesin-14 Protein Ncd, T436s Mutant
pdb|3L1C|B Chain B, Kinesin-14 Protein Ncd, T436s Mutant
Length = 383
Score = 120 bits (301), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 80/227 (35%), Positives = 125/227 (55%), Gaps = 19/227 (8%)
Query: 2 IGITEYTMSDIYDYIEKHKER--EFVLKFSAMEIYNESVRDLLSADTSPL--RLLDDPER 57
+G+ T+ ++D I ++ E+ +K + +EIYNE + DLLS + + R+ + +
Sbjct: 160 VGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKN 219
Query: 58 GTIVEKLTEETLKDWNHLKELLSTCEAQRQIGETSLNETSSRSHQILRLTVESSACEFIG 117
V +TEET+ D NHL+ L+ T + R T+ NE SSRSH + +L E IG
Sbjct: 220 DIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKL-------ELIG 272
Query: 118 NDPSSL---TATVNFVDLAGSERASQALSAGTRLKEGCHINRSLLTLGTVIRKLSKGRNG 174
++N VDLAGSE + TR+ E +INRSL L VI L + +
Sbjct: 273 RHAEKQEISVGSINLVDLAGSESPKTS----TRMTETKNINRSLSELTNVILALLQ-KQD 327
Query: 175 HVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFAS 221
H+P+R+SKLT +L SLGGN++T + +SP + ++S +L FA+
Sbjct: 328 HIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAA 374
>pdb|1N6M|A Chain A, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
pdb|1N6M|B Chain B, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
Length = 409
Score = 118 bits (296), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 79/227 (34%), Positives = 124/227 (54%), Gaps = 19/227 (8%)
Query: 2 IGITEYTMSDIYDYIEKHKER--EFVLKFSAMEIYNESVRDLLSADTSPL--RLLDDPER 57
+G+ T+ ++D I ++ E+ +K + +EIYNE + DLLS + + R+ + +
Sbjct: 160 VGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKN 219
Query: 58 GTIVEKLTEETLKDWNHLKELLSTCEAQRQIGETSLNETSSRSHQILRLTVESSACEFIG 117
V +TEET+ D NHL+ L+ T + R T+ NE SSRSH + +L E IG
Sbjct: 220 DIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKL-------ELIG 272
Query: 118 NDPSSL---TATVNFVDLAGSERASQALSAGTRLKEGCHINRSLLTLGTVIRKLSKGRNG 174
++N VDLAGSE + TR+ E +I RSL L VI L + +
Sbjct: 273 RHAEKQEISVGSINLVDLAGSESPKTS----TRMTETKNIKRSLSELTNVILALLQ-KQD 327
Query: 175 HVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFAS 221
H+P+R+SKLT +L SLGGN++T + +SP + ++S +L FA+
Sbjct: 328 HIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAA 374
>pdb|4GKR|A Chain A, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
pdb|4GKR|B Chain B, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
Length = 371
Score = 118 bits (296), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 83/235 (35%), Positives = 125/235 (53%), Gaps = 20/235 (8%)
Query: 3 GITEYTMSDIYDYIEKHKEREFVLKFSA--MEIYNESVRDLL------------SADTSP 48
GI T++ I+ +I+K R + K S +EIYNE++ DLL +AD+
Sbjct: 130 GIVPATINHIFSWIDKLAARGWSYKVSCEFIEIYNENIVDLLRSGAPSQENNDRNADSKH 189
Query: 49 LRLLDDPERGTIVEKLTEETLKDWNHLKELLSTCEAQRQIGETSLNETSSRSHQILRLTV 108
D + T + +T L + + ++L R T+ NE SSRSH I + +
Sbjct: 190 EIRHDQELKTTYITNITTCVLDSRDTVDKVLKRANKLRSTASTAANEHSSRSHSIFIIHL 249
Query: 109 ESSACEFIGNDPSSLTATVNFVDLAGSERASQALSAGTRLKEGCHINRSLLTLGTVIRKL 168
E E G + +N VDLAGSER + ++ G RL+E IN+SL LG VI L
Sbjct: 250 EGKN-EGTGEKSQGI---LNLVDLAGSERLNSSMVVGERLRETQSINKSLSCLGDVIHAL 305
Query: 169 SK--GRNGHVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFAS 221
+ G+ H+PFR+SKLT +LQ SL G+++T + +SPA H+ ++ N+L FAS
Sbjct: 306 NSPDGQKRHIPFRNSKLTYLLQYSLIGSSKTLMFVNISPAALHLNETINSLRFAS 360
>pdb|3NWN|A Chain A, Crystal Structure Of The Human Kif9 Motor Domain In
Complex With Adp
Length = 359
Score = 116 bits (291), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 74/230 (32%), Positives = 120/230 (52%), Gaps = 9/230 (3%)
Query: 3 GITEYTMSDIYDYIEKHKEREFVLKFSAMEIYNESVRDLLSA------DTSPLRLLDDPE 56
GI + ++ IE+ ++ S +EIYNES+ DLLS +P+ ++++P+
Sbjct: 133 GILPRALQQVFRMIEERPTHAITVRVSYLEIYNESLFDLLSTLPYVGPSVTPMTIVENPQ 192
Query: 57 RGTIVEKLTEETLKDWNHLKELLSTCEAQRQIGETSLNETSSRSHQILRLTVESSACEFI 116
G ++ L+ LL E R I ++N+ SSRSH I + +E+ +
Sbjct: 193 -GVFIKGLSVHLTSQEEDAFSLLFEGETNRIIASHTMNKNSSRSHCIFTIYLEAHSRTL- 250
Query: 117 GNDPSSLTATVNFVDLAGSERASQALSAGTRLKEGCHINRSLLTLGTVIRKLSKGRNGHV 176
++ +T+ +N VDLAGSER ++ S G LKE +IN+SL L I L + H+
Sbjct: 251 -SEEKYITSKINLVDLAGSERLGKSGSEGQVLKEATYINKSLSFLEQAIIALGDQKRDHI 309
Query: 177 PFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAKEV 226
PFR KLT L+ SLGGN ++ + + +E++ ++L FAS K V
Sbjct: 310 PFRQCKLTHALKDSLGGNCNMVLVTNIYGEAAQLEETLSSLRFASRMKLV 359
>pdb|4H1G|A Chain A, Structure Of Candida Albicans Kar3 Motor Domain Fused To
Maltose- Binding Protein
Length = 715
Score = 116 bits (290), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 77/230 (33%), Positives = 122/230 (53%), Gaps = 20/230 (8%)
Query: 3 GITEYTMSDIYDYIEKHKER--EFVLKFSAMEIYNESVRDLLSADTSPLRLL----DDPE 56
G+ ++ I++ IE+ KE+ + ++ +EIYNE++ DLL+ P DD
Sbjct: 486 GMIPLSLKKIFNDIEELKEKGWSYTVRGKFIEIYNEAIVDLLNPKIDPNTKYEIKHDDIA 545
Query: 57 RGTIVEKLTEETLKDWNHLKELLSTCEAQRQIGETSLNETSSRSHQILRLTVESSACEFI 116
T V ++ +K +L+ +R T N+ SSRSH I + ++
Sbjct: 546 GKTTVTNVSTIDIKSPEQAITILNQANKKRSTAATKSNDHSSRSHSIFIIDLQGY----- 600
Query: 117 GNDPSSLT-----ATVNFVDLAGSERASQALSAGTRLKEGCHINRSLLTLGTVIRKLSKG 171
+SLT T+N +DLAGSER + + + G RLKE IN+SL LG VI L+
Sbjct: 601 ----NSLTKESSYGTLNLIDLAGSERLNNSRAEGDRLKETQAINKSLSCLGDVIHSLNLK 656
Query: 172 RNGHVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFAS 221
HVP+R+SKLT +L+ SLGGN++T + +SP + ++ N+L FA+
Sbjct: 657 DGSHVPYRNSKLTYLLKHSLGGNSKTLMFVNISPLTKDLNETINSLRFAT 706
>pdb|4ETP|A Chain A, C-Terminal Motor And Motor Homology Domain Of Kar3vik1
Fused To A Synthetic Heterodimeric Coiled Coil
Length = 403
Score = 113 bits (283), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 85/243 (34%), Positives = 125/243 (51%), Gaps = 38/243 (15%)
Query: 3 GITEYTMSDIYDYIEKHKEREFVLKFSA--MEIYNESVRDLLSADTS---------PLRL 51
GI T+S I+++I K K + + K +A +EIYNE++ DLL +D + +
Sbjct: 164 GIIPSTISHIFNWINKLKTKGWDYKVNAEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEI 223
Query: 52 LDDPERGTIV-----------EKLTEETLKDWNHLKELLSTCEAQRQIGETSLNETSSRS 100
D E T E++ E LK N L+ ST NE SSRS
Sbjct: 224 RHDQETKTTTITNVTSVKLESEEMVEIILKKANKLRSTASTAS----------NEHSSRS 273
Query: 101 HQILRLTVESSACEFIGNDPSSLTATVNFVDLAGSERASQALSAGTRLKEGCHINRSLLT 160
H I + + S + + T+N VDLAGSER + + G RL+E +IN+SL
Sbjct: 274 HSIFIIHLSGSNAK----TGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSA 329
Query: 161 LGTVIRKLSK--GRNGHVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLL 218
LG VI L + H+PFR+SKLT +LQ SL G+++T + +SP+ SH+ ++ N+L
Sbjct: 330 LGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLR 389
Query: 219 FAS 221
FAS
Sbjct: 390 FAS 392
>pdb|2GRY|A Chain A, Crystal Structure Of The Human Kif2 Motor Domain In
Complex With Adp
Length = 420
Score = 112 bits (280), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 84/230 (36%), Positives = 125/230 (54%), Gaps = 19/230 (8%)
Query: 3 GITEYTMSDIYDYIEK--HKEREFVLKFSAMEIYNESVRDLLSADTSPLRLLDDPERGTI 60
GI D++ ++K +K+ E + + EIY+ V DLL+ T LR+L+D ++
Sbjct: 204 GIYALAARDVFLMLKKPNYKKLELQVYATFFEIYSGKVFDLLNRKTK-LRVLEDGKQQVQ 262
Query: 61 VEKLTEETLKDWNHLKELLSTCEAQRQIGETSLNETSSRSHQILRLTVESSACEFIGNDP 120
V L E +K + +L+ + R G+TS N SSRSH + ++ +
Sbjct: 263 VVGLQEREVKCVEDVLKLIDIGNSCRTSGQTSANAHSSRSHAVFQIILRRKG-------- 314
Query: 121 SSLTATVNFVDLAGSERASQALSAG--TRLKEGCHINRSLLTLGTVIRKLSKGRNG-HVP 177
L + +DLAG+ER + SA TRL EG IN+SLL L IR L GRN H P
Sbjct: 315 -KLHGKFSLIDLAGNERGADTSSADRQTRL-EGAEINKSLLALKECIRAL--GRNKPHTP 370
Query: 178 FRDSKLTRILQSS-LGGNARTAIICTLSPARSHVEQSRNTLLFASCAKEV 226
FR SKLT++L+ S +G N+RT +I T+SP + E + NTL +A+ KE+
Sbjct: 371 FRASKLTQVLRDSFIGENSRTCMIATISPGMASCENTLNTLRYANRVKEL 420
>pdb|3BFN|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 22
Length = 388
Score = 111 bits (278), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 78/226 (34%), Positives = 116/226 (51%), Gaps = 10/226 (4%)
Query: 28 FSAMEIYNESVRDLLSADTSPLRLLDDPERGTIVEKLTEETLKDWNHLKELLSTCEAQRQ 87
S +EIY E V DLL + L + +D ++ L+++ + + + R
Sbjct: 153 MSYLEIYQEKVLDLLDPASGDLVIREDCRGNILIPGLSQKPISSFADFERHFLPASRNRT 212
Query: 88 IGETSLNETSSRSHQILRLTVESS--ACEFIGNDPSSLTATVNFVDLAGSERASQALSAG 145
+G T LN+ SSRSH +L + V+ F + + +DLAGSE + + G
Sbjct: 213 VGATRLNQRSSRSHAVLLVKVDQRERLAPFRQRE-----GKLYLIDLAGSEDNRRTGNKG 267
Query: 146 TRLKEGCHINRSLLTLGTVIRKLSKGRNGHVPFRDSKLTRILQSSLGGNARTAIICTLSP 205
RLKE IN SL LG V+ L++G VP+RDSKLTR+LQ SLGG+A + +I ++P
Sbjct: 268 LRLKESGAINTSLFVLGKVVDALNQGLP-RVPYRDSKLTRLLQDSLGGSAHSILIANIAP 326
Query: 206 ARSHVEQSRNTLLFASCAKEVTTNAQVNIVMSDKAL--VKHLQREL 249
R + + L FA+ +KEV N + AL VK Q+EL
Sbjct: 327 ERRFYLDTVSALNFAARSKEVINRPFTNESLQPHALGPVKLSQKEL 372
>pdb|3KAR|A Chain A, The Motor Domain Of Kinesin-Like Protein Kar3, A
Saccharomyces Cerevisiae Kinesin-Related Protein
Length = 346
Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 84/243 (34%), Positives = 124/243 (51%), Gaps = 38/243 (15%)
Query: 3 GITEYTMSDIYDYIEKHKEREFVLKFSA--MEIYNESVRDLLSADTS---------PLRL 51
GI T+S I+++I K K + + K + +EIYNE++ DLL +D + +
Sbjct: 107 GIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEI 166
Query: 52 LDDPERGTIV-----------EKLTEETLKDWNHLKELLSTCEAQRQIGETSLNETSSRS 100
D E T E++ E LK N L R T+ NE SSRS
Sbjct: 167 RHDQETKTTTITNVTSCKLESEEMVEIILKKANKL----------RSTASTASNEHSSRS 216
Query: 101 HQILRLTVESSACEFIGNDPSSLTATVNFVDLAGSERASQALSAGTRLKEGCHINRSLLT 160
H I + + S + + T+N VDLAGSER + + G RL+E +IN+SL
Sbjct: 217 HSIFIIHLSGSNAK----TGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSC 272
Query: 161 LGTVIRKLSK--GRNGHVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLL 218
LG VI L + H+PFR+SKLT +LQ SL G+++T + +SP+ SH+ ++ N+L
Sbjct: 273 LGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLR 332
Query: 219 FAS 221
FAS
Sbjct: 333 FAS 335
>pdb|1F9T|A Chain A, Crystal Structures Of Kinesin Mutants Reveal A Signalling
Pathway For Activation Of The Motor Atpase
Length = 358
Score = 110 bits (276), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 84/243 (34%), Positives = 124/243 (51%), Gaps = 38/243 (15%)
Query: 3 GITEYTMSDIYDYIEKHKEREFVLKFSA--MEIYNESVRDLLSADTS---------PLRL 51
GI T+S I+++I K K + + K + +EIYNE++ DLL +D + +
Sbjct: 119 GIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEI 178
Query: 52 LDDPERGTIV-----------EKLTEETLKDWNHLKELLSTCEAQRQIGETSLNETSSRS 100
D E T E++ E LK N L R T+ NE SSRS
Sbjct: 179 RHDQETKTTTITNVTSCKLESEEMVEIILKKANKL----------RSTASTASNEHSSRS 228
Query: 101 HQILRLTVESSACEFIGNDPSSLTATVNFVDLAGSERASQALSAGTRLKEGCHINRSLLT 160
H I + + S + + T+N VDLAGSER + + G RL+E +IN+SL
Sbjct: 229 HSIFIIHLSGSNAK----TGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSC 284
Query: 161 LGTVIRKLSK--GRNGHVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLL 218
LG VI L + H+PFR+SKLT +LQ SL G+++T + +SP+ SH+ ++ N+L
Sbjct: 285 LGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLR 344
Query: 219 FAS 221
FAS
Sbjct: 345 FAS 347
>pdb|1F9W|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
pdb|1F9W|B Chain B, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 108 bits (270), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 83/243 (34%), Positives = 123/243 (50%), Gaps = 38/243 (15%)
Query: 3 GITEYTMSDIYDYIEKHKEREFVLKFSA--MEIYNESVRDLLSADTS---------PLRL 51
GI T+S I+++I K K + + K + +EIYNE++ DLL +D + +
Sbjct: 108 GIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEI 167
Query: 52 LDDPERGTIV-----------EKLTEETLKDWNHLKELLSTCEAQRQIGETSLNETSSRS 100
D E T E++ E LK N L R T+ NE SSRS
Sbjct: 168 RHDQETKTTTITNVTSCKLESEEMVEIILKKANKL----------RSTASTASNEHSSRS 217
Query: 101 HQILRLTVESSACEFIGNDPSSLTATVNFVDLAGSERASQALSAGTRLKEGCHINRSLLT 160
H I + + S + + T+N VDLAGS R + + G RL+E +IN+SL
Sbjct: 218 HSIFIIHLSGSNAK----TGAHSYGTLNLVDLAGSARINVSQVVGDRLRETQNINKSLSC 273
Query: 161 LGTVIRKLSK--GRNGHVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLL 218
LG VI L + H+PFR+SKLT +LQ SL G+++T + +SP+ SH+ ++ N+L
Sbjct: 274 LGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLR 333
Query: 219 FAS 221
FAS
Sbjct: 334 FAS 336
>pdb|1F9U|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 108 bits (270), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 83/243 (34%), Positives = 123/243 (50%), Gaps = 38/243 (15%)
Query: 3 GITEYTMSDIYDYIEKHKEREFVLKFSA--MEIYNESVRDLLSADTS---------PLRL 51
GI T+S I+++I K K + + K + +EIYNE++ DLL +D + +
Sbjct: 108 GIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEI 167
Query: 52 LDDPERGTIV-----------EKLTEETLKDWNHLKELLSTCEAQRQIGETSLNETSSRS 100
D E T E++ E LK N L R T+ NE SSRS
Sbjct: 168 RHDQETKTTTITNVTSCKLESEEMVEIILKKANKL----------RSTASTASNEHSSRS 217
Query: 101 HQILRLTVESSACEFIGNDPSSLTATVNFVDLAGSERASQALSAGTRLKEGCHINRSLLT 160
H I + + S + + T+N VDLAGSER + + G RL+E +I +SL
Sbjct: 218 HSIFIIHLSGSNAK----TGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNIKKSLSC 273
Query: 161 LGTVIRKLSK--GRNGHVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLL 218
LG VI L + H+PFR+SKLT +LQ SL G+++T + +SP+ SH+ ++ N+L
Sbjct: 274 LGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLR 333
Query: 219 FAS 221
FAS
Sbjct: 334 FAS 336
>pdb|1F9V|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 108 bits (269), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 83/243 (34%), Positives = 123/243 (50%), Gaps = 38/243 (15%)
Query: 3 GITEYTMSDIYDYIEKHKEREFVLKFSA--MEIYNESVRDLLSADTS---------PLRL 51
GI T+S I+++I K K + + K + +EIYNE++ DLL +D + +
Sbjct: 108 GIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEI 167
Query: 52 LDDPERGTIV-----------EKLTEETLKDWNHLKELLSTCEAQRQIGETSLNETSSRS 100
D E T E++ E LK N L R T+ NE SS S
Sbjct: 168 RHDQETKTTTITNVTSCKLESEEMVEIILKKANKL----------RSTASTASNEHSSAS 217
Query: 101 HQILRLTVESSACEFIGNDPSSLTATVNFVDLAGSERASQALSAGTRLKEGCHINRSLLT 160
H I + + S + + T+N VDLAGSER + + G RL+E +IN+SL
Sbjct: 218 HSIFIIHLSGSNAK----TGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSC 273
Query: 161 LGTVIRKLSK--GRNGHVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLL 218
LG VI L + H+PFR+SKLT +LQ SL G+++T + +SP+ SH+ ++ N+L
Sbjct: 274 LGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLR 333
Query: 219 FAS 221
FAS
Sbjct: 334 FAS 336
>pdb|3T0Q|A Chain A, Motor Domain Structure Of The Kar3-Like Kinesin From
Ashbya Gossypii
Length = 349
Score = 106 bits (265), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 74/235 (31%), Positives = 119/235 (50%), Gaps = 20/235 (8%)
Query: 3 GITEYTMSDIYDYIEKHKER--EFVLKFSAMEIYNESVRDLLS-----------ADTSPL 49
G+ T+S I+ + KER + ++ +EIYNE++ DLL D+
Sbjct: 109 GMIPMTLSHIFKWTANLKERGWNYEMECEYIEIYNETILDLLRDFKSHDNIDEILDSQKH 168
Query: 50 RLLDDPER-GTIVEKLTEETLKDWNHLKELLSTCEAQRQIGETSLNETSSRSHQILRLTV 108
+ D E+ GT + +T + + + +L R T NE SSRSH + + +
Sbjct: 169 DIRHDHEKQGTYITNVTRMKMTSTSQVDTILKKASKMRSTAATRSNERSSRSHSVFMVHI 228
Query: 109 ESSACEFIGNDPSSLTATVNFVDLAGSERASQALSAGTRLKEGCHINRSLLTLGTVIRKL 168
+ + +N VDLAGSER + + G RL+E +IN+SL LG VI L
Sbjct: 229 NGRNL----HTGETSQGKLNLVDLAGSERINSSAVTGERLRETQNINKSLSCLGDVIYAL 284
Query: 169 SKGRNG--HVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFAS 221
+ G ++PFR+SKLT +LQ SL G+++T + + P +H+ ++ N+L FAS
Sbjct: 285 NTPDAGKRYIPFRNSKLTYLLQYSLVGDSKTLMFVNIPPDPNHISETLNSLRFAS 339
>pdb|2HEH|A Chain A, Crystal Structure Of The Kif2c Motor Domain (Casp Target)
Length = 387
Score = 103 bits (257), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 72/200 (36%), Positives = 110/200 (55%), Gaps = 15/200 (7%)
Query: 31 MEIYNESVRDLLSADTSPLRLLDDPERGTIVEKLTEETLKDWNHLKELLSTCEAQRQIGE 90
EIYN + DLL+ + LR+L+D ++ V L E + + + +++ A R G+
Sbjct: 196 FEIYNGKLFDLLN-KKAKLRVLEDGKQQVQVVGLQEHLVNSADDVIKMIDMGSACRTSGQ 254
Query: 91 TSLNETSSRSHQILRLTVESSACEFIGNDPSSLTATVNFVDLAGSERASQALSAG--TRL 148
T N SSRSH ++ + + + + VDLAG+ER + SA TR+
Sbjct: 255 TFANSNSSRSHACFQIILRAKG---------RMHGKFSLVDLAGNERGADTSSADRQTRM 305
Query: 149 KEGCHINRSLLTLGTVIRKLSKGRNGHVPFRDSKLTRILQSS-LGGNARTAIICTLSPAR 207
EG IN+SLL L IR L + + H PFR+SKLT++L+ S +G N+RT +I T+SP
Sbjct: 306 -EGAEINKSLLALKECIRALGQNK-AHTPFRESKLTQVLRDSFIGENSRTCMIATISPGI 363
Query: 208 SHVEQSRNTLLFASCAKEVT 227
S E + NTL +A KE++
Sbjct: 364 SSCEYTLNTLRYADRVKELS 383
>pdb|2REP|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member C1
Length = 376
Score = 103 bits (256), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 84/234 (35%), Positives = 120/234 (51%), Gaps = 22/234 (9%)
Query: 3 GITEYTMSDIYDYIEKHKEREFVLKFSA--MEIYNESVRDLLSADTSPLRLLDDPER--G 58
G+ + ++ ++ + + F A +EIYNE+VRDLL+ T + + R G
Sbjct: 145 GLIPRALRHLFSVAQELSGQGWTYSFVASYVEIYNETVRDLLATGTRKGQGGECEIRRAG 204
Query: 59 TIVEKLTEETLKDW-----NHLKELLSTCEAQRQIGETSLNETSSRSHQILRLTV--ESS 111
E+LT + + LL R + T+ NE SSRSH + +L + E S
Sbjct: 205 PGSEELTVTNARYVPVSCEKEVDALLHLARQNRAVARTAQNERSSRSHSVFQLQISGEHS 264
Query: 112 ACEFIGNDPSSLTATVNFVDLAGSERASQALSAGT----RLKEGCHINRSLLTLGTVIRK 167
+ P SL VDLAGSER L+ G RL+E IN SL TLG VI
Sbjct: 265 SRGLQCGAPLSL------VDLAGSERLDPGLALGPGERERLRETQAINSSLSTLGLVIMA 318
Query: 168 LSKGRNGHVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFAS 221
LS + HVP+R+SKLT +LQ+SLGG+A+ + +SP +V +S N+L FAS
Sbjct: 319 LSN-KESHVPYRNSKLTYLLQNSLGGSAKMLMFVNISPLEENVSESLNSLRFAS 371
>pdb|1V8J|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With Mg-adp
pdb|1V8K|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With
Mg-Amppnp
Length = 410
Score = 102 bits (255), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 73/200 (36%), Positives = 109/200 (54%), Gaps = 15/200 (7%)
Query: 31 MEIYNESVRDLLSADTSPLRLLDDPERGTIVEKLTEETLKDWNHLKELLSTCEAQRQIGE 90
EIYN V DLL+ + LR+L+D + V L E + + + ++++ A R G+
Sbjct: 216 FEIYNGKVFDLLN-KKAKLRVLEDSRQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQ 274
Query: 91 TSLNETSSRSHQILRLTVESSACEFIGNDPSSLTATVNFVDLAGSERASQALSAG--TRL 148
T N SSRSH ++ + + L + VDLAG+ER + SA TR+
Sbjct: 275 TFANSNSSRSHACFQILLRTKG---------RLHGKFSLVDLAGNERGADTSSADRQTRM 325
Query: 149 KEGCHINRSLLTLGTVIRKLSKGRNGHVPFRDSKLTRILQSS-LGGNARTAIICTLSPAR 207
EG IN+SLL L IR L + + H PFR+SKLT++L+ S +G N+RT +I +SP
Sbjct: 326 -EGAEINKSLLALKECIRALGQNK-AHTPFRESKLTQVLRDSFIGENSRTCMIAMISPGI 383
Query: 208 SHVEQSRNTLLFASCAKEVT 227
S E + NTL +A KE++
Sbjct: 384 SSCEYTLNTLRYADRVKELS 403
>pdb|3EDL|D Chain D, Kinesin13-Microtubule Ring Complex
Length = 331
Score = 102 bits (253), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 73/200 (36%), Positives = 109/200 (54%), Gaps = 15/200 (7%)
Query: 31 MEIYNESVRDLLSADTSPLRLLDDPERGTIVEKLTEETLKDWNHLKELLSTCEAQRQIGE 90
EIYN V DLL+ + LR+L+D + V L E + + + ++++ A R G+
Sbjct: 144 FEIYNGKVFDLLN-KKAKLRVLEDSRQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQ 202
Query: 91 TSLNETSSRSHQILRLTVESSACEFIGNDPSSLTATVNFVDLAGSERASQALSAG--TRL 148
T N SSRSH ++ + + L + VDLAG+ER + SA TR+
Sbjct: 203 TFANSNSSRSHACFQILLRTKG---------RLHGKFSLVDLAGNERGADTSSADRQTRM 253
Query: 149 KEGCHINRSLLTLGTVIRKLSKGRNGHVPFRDSKLTRILQSS-LGGNARTAIICTLSPAR 207
EG IN+SLL L IR L + + H PFR+SKLT++L+ S +G N+RT +I +SP
Sbjct: 254 -EGAEINKSLLALKECIRALGQNK-AHTPFRESKLTQVLRDSFIGENSRTCMIAMISPGI 311
Query: 208 SHVEQSRNTLLFASCAKEVT 227
S E + NTL +A KE++
Sbjct: 312 SSCEYTLNTLRYADRVKELS 331
>pdb|1RY6|A Chain A, Crystal Structure Of Internal Kinesin Motor Domain
Length = 360
Score = 100 bits (250), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 74/226 (32%), Positives = 123/226 (54%), Gaps = 15/226 (6%)
Query: 3 GITEYTMSDIYDYIEKH-KEREFVLKFSAMEIYNESVRDLLSADTSPLRLLDDPERGTIV 61
GI +Y DI+ ++ + K+ + S EIY + DLL + L++ ++ +V
Sbjct: 115 GIFQYAAGDIFTFLNIYDKDNTKGIFISFYEIYCGKLYDLLQK-RKMVAALENGKKEVVV 173
Query: 62 EKLTEETLKDWNHLKELLSTCEAQ--RQIGETSLNETSSRSHQILRLTVESSACEFIGND 119
+ L + L+ + +L + R+IG S N+ SSRSH IL + ++ N
Sbjct: 174 KDL--KILRVLTKEELILKMIDGVLLRKIGVNSQNDESSRSHAILNIDLKDI------NK 225
Query: 120 PSSLTATVNFVDLAGSERASQALSAGTRLK-EGCHINRSLLTLGTVIRKLSKGRNGHVPF 178
+SL + F+DLAGSER + +S + + +G +INRSLL L IR + +N H+PF
Sbjct: 226 NTSL-GKIAFIDLAGSERGADTVSQNKQTQTDGANINRSLLALKECIRAMDSDKN-HIPF 283
Query: 179 RDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAK 224
RDS+LT++L+ G +++ +I +SP S EQ+ NTL ++S K
Sbjct: 284 RDSELTKVLRDIFVGKSKSIMIANISPTISCCEQTLNTLRYSSRVK 329
>pdb|3PXN|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Kin10NOD IN Complex With Divalent Manganese And Adp
Length = 344
Score = 87.0 bits (214), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 66/228 (28%), Positives = 113/228 (49%), Gaps = 20/228 (8%)
Query: 2 IGITEYTMSDIYDYIEKHKERE---FVLKFSAMEIYNESVRDLLSADTSPLRLLDDPERG 58
+GI + DI++ + +E + S +EIYNE DLL + + +R
Sbjct: 125 LGILPRALGDIFERVTARQENNKDAIQVYASFIEIYNEKPFDLLGSTPHMPMVAARCQRC 184
Query: 59 TIVEKLTEETLKDWNHLKELLSTCEAQRQIGETSLNETSSRSHQILRLTVESSACEFIGN 118
T L + D +H+ EL + R++ T++N SSRSH I+ + V+S
Sbjct: 185 TC---LPLHSQADLHHILELGTR---NRRVRPTNMNSNSSRSHAIVTIHVKSKTHH---- 234
Query: 119 DPSSLTATVNFVDLAGSERASQALSAGTRLKEGCHINRSLLTLGTVIRKLSKGRNGHVPF 178
+ +N VDLAGSE + G +EG +IN LL++ V+ ++ G +P+
Sbjct: 235 ------SRMNIVDLAGSEGVRRTGHEGVARQEGVNINLGLLSINKVVMSMAAGHTV-IPY 287
Query: 179 RDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAKEV 226
RDS LT +LQ+SL + + +SP + + ++ +TL F + AK++
Sbjct: 288 RDSVLTTVLQASLTAQSYLTFLACISPHQCDLSETLSTLRFGTSAKKL 335
>pdb|3DC4|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Adp
pdb|3DCB|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Amppnp
pdb|3DCO|N Chain N, Drosophila Nod (3dc4) And Bovine Tubulin (1jff) Docked
Into The 11-Angstrom Cryo-Em Map Of Nucleotide-Free Nod
Complexed To The Microtubule
Length = 344
Score = 86.3 bits (212), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 66/226 (29%), Positives = 111/226 (49%), Gaps = 20/226 (8%)
Query: 2 IGITEYTMSDIYDYIEKHKERE---FVLKFSAMEIYNESVRDLLSADTSPLRLLDDPERG 58
+GI + DI++ + +E + S +EIYNE DLL + + +R
Sbjct: 125 LGILPRALGDIFERVTARQENNKDAIQVYASFIEIYNEKPFDLLGSTPHMPMVAARCQRC 184
Query: 59 TIVEKLTEETLKDWNHLKELLSTCEAQRQIGETSLNETSSRSHQILRLTVESSACEFIGN 118
T L + D +H+ EL + R++ T++N SSRSH I+ + V+S
Sbjct: 185 TC---LPLHSQADLHHILELGTR---NRRVRPTNMNSNSSRSHAIVTIHVKSKTHH---- 234
Query: 119 DPSSLTATVNFVDLAGSERASQALSAGTRLKEGCHINRSLLTLGTVIRKLSKGRNGHVPF 178
+ +N VDLAGSE + G +EG +IN LL++ V+ ++ G +P+
Sbjct: 235 ------SRMNIVDLAGSEGVRRTGHEGVARQEGVNINLGLLSINKVVMSMAAGHTV-IPY 287
Query: 179 RDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAK 224
RDS LT +LQ+SL + + +SP + + ++ +TL F + AK
Sbjct: 288 RDSVLTTVLQASLTAQSYLTFLACISPHQCDLSETLSTLRFGTSAK 333
>pdb|3KIN|B Chain B, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|D Chain D, Kinesin (Dimeric) From Rattus Norvegicus
Length = 117
Score = 81.3 bits (199), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 45/117 (38%), Positives = 68/117 (58%), Gaps = 17/117 (14%)
Query: 155 NRSLLTLGTVIRKLSKGRNGHVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSR 214
N+SL LG VI L++G HVP+RDSK+TRILQ SLGGN RT I+ SP+ + +++
Sbjct: 1 NKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEAETK 60
Query: 215 NTLLFASCAKEVTTNAQVNIVMS-----------------DKALVKHLQRELSRLEN 254
+TL+F AK + VN+ ++ K++++HL+ EL+R N
Sbjct: 61 STLMFGQRAKTIKNTVSVNLELTAEEWKKKYEKEKEKNKALKSVIQHLEVELNRWRN 117
>pdb|2KIN|B Chain B, Kinesin (Monomeric) From Rattus Norvegicus
Length = 100
Score = 77.8 bits (190), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 38/82 (46%), Positives = 54/82 (65%)
Query: 153 HINRSLLTLGTVIRKLSKGRNGHVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQ 212
+IN+SL LG VI L++G HVP+RDSK+TRILQ SL GN RT I+ SP+ + +
Sbjct: 3 NINKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLDGNCRTTIVICCSPSVFNEAE 62
Query: 213 SRNTLLFASCAKEVTTNAQVNI 234
+++TL+F AK + VN+
Sbjct: 63 TKSTLMFGQRAKTIKNTVSVNL 84
>pdb|2KIN|A Chain A, Kinesin (Monomeric) From Rattus Norvegicus
pdb|3KIN|A Chain A, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|C Chain C, Kinesin (Dimeric) From Rattus Norvegicus
Length = 238
Score = 70.5 bits (171), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 70/139 (50%), Gaps = 5/139 (3%)
Query: 1 MIGITEYTMSDIYDYIEKHKER-EFVLKFSAMEIYNESVRDLLSADTSPLRLLDDPERGT 59
++GI DI+D+I E EF +K S EIY + +RDLL + L + +D R
Sbjct: 104 LMGIIPRIAHDIFDHIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLAVHEDKNRVP 163
Query: 60 IVEKLTEETLKDWNHLKELLSTCEAQRQIGETSLNETSSRSHQILRLTVESSACEFIGND 119
V+ TE + + +++ +A R + T++NE SSRSH I + ++ E
Sbjct: 164 YVKGCTERFVSSPEEVMDVIDEGKANRHVAVTNMNEHSSRSHSIFLINIKQENVE----T 219
Query: 120 PSSLTATVNFVDLAGSERA 138
L+ + VDLAGSE+
Sbjct: 220 EKKLSGKLYLVDLAGSEKV 238
>pdb|2Z1T|A Chain A, Crystal Structure Of Hydrogenase Maturation Protein Hype
pdb|2Z1U|A Chain A, Crystal Structure Of Hydrogenase Maturation Protein Hype
In Complex With Atp
Length = 343
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 64/145 (44%), Gaps = 30/145 (20%)
Query: 60 IVEKLTEETLKDWNHLKELLSTCEAQRQIGETSLNETSSRSHQILRLTVES--------S 111
+VEKL E + D + L++ R T+LNE + +S + + + +
Sbjct: 204 VVEKLVLE-VGDIHVLRD------PTRGGLATTLNEIAGQSQAVCHVLETAVPVRESVRN 256
Query: 112 ACEFIGNDPSSLTATVNFVDLAGSERASQALSAGTRLKEGCHINRSLLTLGTV--IRKLS 169
C F+G DP L + + ERA AL+ L+EG H +G+V + +L
Sbjct: 257 GCSFLGLDPLYLANEGKLICILPEERAEAALAV---LREGPH-GEHAARIGSVKSVGELG 312
Query: 170 KGRNGHVPFRDSKLTRILQSSLGGN 194
R G V +++++LGG+
Sbjct: 313 AARAGQV---------VMETALGGH 328
>pdb|2GJ9|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|C Chain C, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|D Chain D, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJA|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Nh4+
pdb|2GJA|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Nh4+
Length = 172
Score = 30.0 bits (66), Expect = 5.7, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 32/65 (49%)
Query: 473 TSGVAETEDEDEQCGESRSTTLKEQNELNNIILNSVTPSTVEPSPWRPEKYTPTPSILNL 532
T+G+ E DE E+ G R+ EQ + +++ T V+P+ PE P+ L +
Sbjct: 59 TAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPI 118
Query: 533 TRSRS 537
T R+
Sbjct: 119 TVVRN 123
>pdb|1RFL|A Chain A, Nmr Data Driven Structural Model Of G-Domain Of Mnme
Protein
Length = 172
Score = 30.0 bits (66), Expect = 5.8, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 32/65 (49%)
Query: 473 TSGVAETEDEDEQCGESRSTTLKEQNELNNIILNSVTPSTVEPSPWRPEKYTPTPSILNL 532
T+G+ E DE E+ G R+ EQ + +++ T V+P+ PE P+ L +
Sbjct: 62 TAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPI 121
Query: 533 TRSRS 537
T R+
Sbjct: 122 TVVRN 126
>pdb|3GNI|B Chain B, Structure Of Strad And Mo25
Length = 389
Score = 30.0 bits (66), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 8/44 (18%)
Query: 173 NGHVPFRDSKLTRILQSSLGGNAR----TAII----CTLSPARS 208
NGHVPF+D T++L L G T+ I T+SP+RS
Sbjct: 232 NGHVPFKDMPATQMLLEKLNGTVPCLLDTSTIPAEELTMSPSRS 275
>pdb|2WTK|B Chain B, Structure Of The Heterotrimeric Lkb1-Stradalpha-Mo25alpha
Complex
pdb|2WTK|E Chain E, Structure Of The Heterotrimeric Lkb1-Stradalpha-Mo25alpha
Complex
Length = 373
Score = 30.0 bits (66), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 8/44 (18%)
Query: 173 NGHVPFRDSKLTRILQSSLGGNAR----TAII----CTLSPARS 208
NGHVPF+D T++L L G T+ I T+SP+RS
Sbjct: 216 NGHVPFKDMPATQMLLEKLNGTVPCLLDTSTIPAEELTMSPSRS 259
>pdb|4AM0|A Chain A, Structure Of Dengue Virus Strain 4 Diii In Complex With
Fab 2h12
pdb|4AM0|C Chain C, Structure Of Dengue Virus Strain 4 Diii In Complex With
Fab 2h12
pdb|4AM0|E Chain E, Structure Of Dengue Virus Strain 4 Diii In Complex With
Fab 2h12
pdb|4AM0|H Chain H, Structure Of Dengue Virus Strain 4 Diii In Complex With
Fab 2h12
Length = 217
Score = 30.0 bits (66), Expect = 6.9, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 46/119 (38%), Gaps = 17/119 (14%)
Query: 434 VGCVQMGKGTTGYTDLKKSEPSLNKDRDLNMTSVDINPATSGVAETEDEDEQ---CGESR 490
+G + G GT Y D KS+ +L D N + ++ TS ED C
Sbjct: 48 IGNIYPGSGTVNYDDKFKSKATLTIDTSSNTAYMQLSSLTS-------EDSAVYYCTRGG 100
Query: 491 STTLKEQNELNNIILNSVTPSTVEPSPWRPEKYTPTPSILNLTRSRSCKACLMTSYSPD 549
S + + SVT S+ + +P P Y P + T S CL+ Y P+
Sbjct: 101 SHAMDYWGQ-----GTSVTVSSAKTTP--PSVYPLAPGSADTTGSSVTLGCLVKGYFPE 152
>pdb|4AL8|H Chain H, Structure Of Dengue Virus Diii In Complex With Fab 2h12
pdb|4ALA|H Chain H, Structure Of Dengue Virus Diii In Complex With Fab 2h12
Length = 217
Score = 29.6 bits (65), Expect = 7.2, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 46/119 (38%), Gaps = 17/119 (14%)
Query: 434 VGCVQMGKGTTGYTDLKKSEPSLNKDRDLNMTSVDINPATSGVAETEDEDEQ---CGESR 490
+G + G GT Y D KS+ +L D N + ++ TS ED C
Sbjct: 48 IGNIYPGSGTVNYDDKFKSKATLTIDTSSNTAYMQLSSLTS-------EDSAVYYCTRGG 100
Query: 491 STTLKEQNELNNIILNSVTPSTVEPSPWRPEKYTPTPSILNLTRSRSCKACLMTSYSPD 549
S + + SVT S+ + +P P Y P + T S CL+ Y P+
Sbjct: 101 SHAMDYWGQ-----GTSVTVSSAKTTP--PSVYPLAPGCGDTTGSSVTLGCLVKGYFPE 152
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.128 0.361
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,528,057
Number of Sequences: 62578
Number of extensions: 975777
Number of successful extensions: 2086
Number of sequences better than 100.0: 84
Number of HSP's better than 100.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 1856
Number of HSP's gapped (non-prelim): 96
length of query: 909
length of database: 14,973,337
effective HSP length: 108
effective length of query: 801
effective length of database: 8,214,913
effective search space: 6580145313
effective search space used: 6580145313
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 56 (26.2 bits)