Query 002546
Match_columns 909
No_of_seqs 291 out of 1853
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 02:10:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002546.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002546hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF11995 DUF3490: Domain of un 100.0 4.9E-89 1.1E-93 662.4 14.5 160 733-892 1-161 (161)
2 KOG0245 Kinesin-like protein [ 100.0 4.8E-64 1E-68 585.6 22.4 307 2-309 114-444 (1221)
3 KOG0242 Kinesin-like protein [ 100.0 7.6E-62 1.7E-66 572.2 25.4 298 2-310 111-410 (675)
4 KOG4280 Kinesin-like protein [ 100.0 1.6E-61 3.4E-66 553.6 19.4 258 1-260 110-369 (574)
5 KOG0243 Kinesin-like protein [ 100.0 2.3E-59 5.1E-64 555.2 24.7 292 2-296 161-467 (1041)
6 PLN03188 kinesin-12 family pro 100.0 1.1E-55 2.3E-60 528.4 26.6 258 2-259 200-472 (1320)
7 KOG0240 Kinesin (SMY1 subfamil 100.0 3.9E-56 8.4E-61 499.3 21.3 304 2-309 110-446 (607)
8 KOG0241 Kinesin-like protein [ 100.0 6.8E-54 1.5E-58 492.1 23.1 258 2-260 118-384 (1714)
9 cd01373 KISc_KLP2_like Kinesin 100.0 7.7E-53 1.7E-57 463.0 24.4 223 2-226 107-337 (337)
10 cd01370 KISc_KIP3_like Kinesin 100.0 2.5E-52 5.4E-57 459.2 24.9 224 2-226 112-338 (338)
11 cd01365 KISc_KIF1A_KIF1B Kines 100.0 5.7E-51 1.2E-55 450.9 25.5 232 2-233 113-356 (356)
12 cd01368 KISc_KIF23_like Kinesi 100.0 1.4E-50 3E-55 446.6 23.6 218 2-224 113-345 (345)
13 cd01364 KISc_BimC_Eg5 Kinesin 100.0 3.1E-50 6.7E-55 444.0 25.2 230 2-234 117-351 (352)
14 cd01371 KISc_KIF3 Kinesin moto 100.0 8.1E-50 1.8E-54 438.1 24.9 224 2-226 109-333 (333)
15 cd01374 KISc_CENP_E Kinesin mo 100.0 1.8E-49 3.8E-54 433.0 24.9 223 2-226 98-321 (321)
16 cd01375 KISc_KIF9_like Kinesin 100.0 2.2E-49 4.7E-54 435.1 24.3 221 2-224 108-334 (334)
17 cd01372 KISc_KIF4 Kinesin moto 100.0 3.5E-49 7.6E-54 433.4 24.9 227 1-227 103-341 (341)
18 cd01369 KISc_KHC_KIF5 Kinesin 100.0 5.8E-49 1.2E-53 429.4 24.3 221 2-226 104-325 (325)
19 cd01376 KISc_KID_like Kinesin 100.0 9.5E-49 2.1E-53 427.4 24.0 215 2-224 105-319 (319)
20 cd01367 KISc_KIF2_like Kinesin 100.0 1E-48 2.2E-53 427.8 22.0 213 2-224 109-322 (322)
21 cd01366 KISc_C_terminal Kinesi 100.0 1E-47 2.2E-52 420.0 25.1 223 2-229 102-329 (329)
22 PF00225 Kinesin: Kinesin moto 100.0 1.2E-47 2.6E-52 419.0 20.3 225 2-226 101-335 (335)
23 smart00129 KISc Kinesin motor, 100.0 9.1E-47 2E-51 412.8 25.3 230 2-233 104-335 (335)
24 KOG0244 Kinesin-like protein [ 100.0 9.6E-49 2.1E-53 459.2 7.7 254 2-260 94-350 (913)
25 cd00106 KISc Kinesin motor dom 100.0 4.2E-45 9E-50 398.0 24.9 221 2-224 103-328 (328)
26 KOG0246 Kinesin-like protein [ 100.0 7.8E-44 1.7E-48 399.2 18.9 222 1-231 321-546 (676)
27 KOG0239 Kinesin (KAR3 subfamil 100.0 2.4E-44 5.2E-49 423.3 14.5 228 1-233 417-647 (670)
28 KOG0247 Kinesin-like protein [ 100.0 2.4E-42 5.2E-47 396.1 21.6 211 21-233 223-443 (809)
29 COG5059 KIP1 Kinesin-like prot 100.0 1.9E-42 4.2E-47 403.4 20.0 230 1-234 113-344 (568)
30 cd01363 Motor_domain Myosin an 100.0 3.5E-31 7.6E-36 268.7 12.0 133 71-205 54-186 (186)
31 PRK10884 SH3 domain-containing 82.0 3.3 7.1E-05 44.2 6.6 76 236-311 89-166 (206)
32 PF04420 CHD5: CHD5-like prote 80.0 9.7 0.00021 39.0 8.9 66 239-308 39-104 (161)
33 COG5059 KIP1 Kinesin-like prot 79.8 0.44 9.5E-06 57.6 -1.0 81 81-169 486-566 (568)
34 PF03999 MAP65_ASE1: Microtubu 57.3 3.6 7.7E-05 50.4 0.1 47 734-780 288-336 (619)
35 PF06005 DUF904: Protein of un 55.8 85 0.0019 28.4 8.5 52 241-308 19-70 (72)
36 PF14282 FlxA: FlxA-like prote 52.6 61 0.0013 31.1 7.6 59 239-302 18-76 (106)
37 PRK04406 hypothetical protein; 48.0 1.3E+02 0.0028 27.4 8.4 50 244-309 8-57 (75)
38 PRK11637 AmiB activator; Provi 46.3 84 0.0018 36.7 9.0 23 279-301 98-120 (428)
39 PF12325 TMF_TATA_bd: TATA ele 46.0 41 0.00089 33.2 5.4 35 275-309 59-93 (120)
40 PF10205 KLRAQ: Predicted coil 43.9 67 0.0015 31.1 6.2 64 244-309 9-72 (102)
41 COG3883 Uncharacterized protei 43.6 37 0.0008 37.8 5.1 41 269-309 65-105 (265)
42 PRK02119 hypothetical protein; 43.0 2.3E+02 0.005 25.6 9.2 31 279-309 25-55 (73)
43 PF08317 Spc7: Spc7 kinetochor 41.4 1.1E+02 0.0025 34.6 8.8 36 275-310 235-270 (325)
44 KOG1962 B-cell receptor-associ 40.0 98 0.0021 33.6 7.5 18 243-260 130-147 (216)
45 PF01486 K-box: K-box region; 39.9 2.2E+02 0.0049 26.6 9.1 69 240-308 19-99 (100)
46 PF04102 SlyX: SlyX; InterPro 39.8 1.6E+02 0.0036 26.1 7.7 35 277-311 18-52 (69)
47 PF02388 FemAB: FemAB family; 39.1 1.7E+02 0.0036 34.3 9.9 46 156-204 194-239 (406)
48 PF15290 Syntaphilin: Golgi-lo 38.7 1.4E+02 0.003 33.7 8.5 10 297-306 123-132 (305)
49 PF14257 DUF4349: Domain of un 38.6 1.6E+02 0.0034 32.2 9.0 133 150-309 57-194 (262)
50 TIGR02338 gimC_beta prefoldin, 38.4 1.7E+02 0.0037 28.0 8.2 39 270-308 67-105 (110)
51 PRK00295 hypothetical protein; 36.6 2.4E+02 0.0052 25.1 8.2 27 276-302 25-51 (68)
52 COG2433 Uncharacterized conser 35.7 1.2E+02 0.0026 37.5 8.0 33 274-306 478-510 (652)
53 PRK11637 AmiB activator; Provi 34.5 1.4E+02 0.003 35.0 8.3 38 272-309 98-135 (428)
54 KOG3990 Uncharacterized conser 34.3 84 0.0018 34.8 5.9 63 240-311 225-294 (305)
55 PF05529 Bap31: B-cell recepto 34.1 1.2E+02 0.0027 31.4 7.1 30 276-305 160-189 (192)
56 PRK04325 hypothetical protein; 33.4 3.7E+02 0.008 24.4 9.1 29 279-307 25-53 (74)
57 COG3074 Uncharacterized protei 33.4 3.3E+02 0.0072 24.9 8.4 60 240-308 18-77 (79)
58 PF01920 Prefoldin_2: Prefoldi 33.3 2.7E+02 0.0058 25.6 8.5 44 267-310 59-102 (106)
59 PF08614 ATG16: Autophagy prot 32.7 2.5E+02 0.0053 29.5 9.0 58 238-304 114-171 (194)
60 PF06156 DUF972: Protein of un 31.7 2E+02 0.0044 27.9 7.5 32 274-305 26-57 (107)
61 PF12329 TMF_DNA_bd: TATA elem 31.5 4E+02 0.0086 24.1 8.9 60 239-307 11-70 (74)
62 PF07106 TBPIP: Tat binding pr 31.0 49 0.0011 33.8 3.5 18 242-259 88-105 (169)
63 PF04977 DivIC: Septum formati 30.0 1.4E+02 0.003 26.1 5.7 28 276-303 23-50 (80)
64 TIGR02894 DNA_bind_RsfA transc 29.9 2.4E+02 0.0053 29.4 8.1 35 275-309 116-150 (161)
65 PF10392 COG5: Golgi transport 29.8 3.4E+02 0.0073 26.8 8.9 45 214-259 8-52 (132)
66 KOG4196 bZIP transcription fac 29.7 2.6E+02 0.0055 28.4 7.9 34 275-308 86-119 (135)
67 KOG4603 TBP-1 interacting prot 29.6 1.1E+02 0.0025 32.1 5.7 70 240-309 79-148 (201)
68 PF08826 DMPK_coil: DMPK coile 29.2 2.3E+02 0.005 25.1 6.7 30 269-298 31-60 (61)
69 KOG2959 Transcriptional regula 29.2 41 0.00088 35.9 2.5 54 833-886 115-187 (238)
70 PF08700 Vps51: Vps51/Vps67; 28.5 2.9E+02 0.0062 24.7 7.6 60 240-304 26-85 (87)
71 cd00632 Prefoldin_beta Prefold 27.8 2.5E+02 0.0053 26.6 7.3 37 273-309 66-102 (105)
72 KOG1962 B-cell receptor-associ 27.3 4.6E+02 0.0099 28.7 9.9 33 276-308 178-210 (216)
73 KOG0250 DNA repair protein RAD 26.7 1.9E+02 0.0041 38.0 8.0 64 240-311 372-435 (1074)
74 COG2900 SlyX Uncharacterized p 26.4 5.1E+02 0.011 23.8 8.8 39 276-314 21-59 (72)
75 PRK10803 tol-pal system protei 25.7 2.4E+02 0.0053 31.1 7.9 26 277-302 61-86 (263)
76 PRK02793 phi X174 lysis protei 25.5 3.5E+02 0.0076 24.4 7.4 33 278-310 23-55 (72)
77 PF07106 TBPIP: Tat binding pr 25.5 3.3E+02 0.0072 27.8 8.3 18 242-259 81-98 (169)
78 smart00787 Spc7 Spc7 kinetocho 25.1 3.3E+02 0.0072 31.1 8.9 28 280-307 235-262 (312)
79 PF07795 DUF1635: Protein of u 24.5 2.1E+02 0.0045 31.2 6.8 35 271-305 27-61 (214)
80 PF09726 Macoilin: Transmembra 24.0 2.1E+02 0.0046 36.2 7.7 21 240-260 418-438 (697)
81 KOG4348 Adaptor protein CMS/SE 23.7 3.3E+02 0.0071 32.7 8.5 60 237-308 566-625 (627)
82 KOG0993 Rab5 GTPase effector R 23.3 3E+02 0.0065 32.7 8.1 29 281-309 159-187 (542)
83 PRK09343 prefoldin subunit bet 23.1 3.7E+02 0.0081 26.3 7.8 32 277-308 85-116 (121)
84 PRK00846 hypothetical protein; 23.1 5.6E+02 0.012 23.7 8.3 31 279-309 29-59 (77)
85 PF06005 DUF904: Protein of un 23.1 4.3E+02 0.0093 24.0 7.5 29 277-305 25-53 (72)
86 COG4942 Membrane-bound metallo 23.0 2.5E+02 0.0054 33.4 7.6 21 273-293 90-110 (420)
87 PF14389 Lzipper-MIP1: Leucine 22.9 4.7E+02 0.01 24.4 8.0 29 271-299 55-83 (88)
88 PRK09039 hypothetical protein; 22.9 3.1E+02 0.0068 31.5 8.3 18 240-257 137-154 (343)
89 smart00338 BRLZ basic region l 22.6 3.1E+02 0.0067 23.6 6.4 28 277-304 33-60 (65)
90 PF10146 zf-C4H2: Zinc finger- 22.5 3.8E+02 0.0083 29.4 8.5 49 240-297 32-80 (230)
91 COG1382 GimC Prefoldin, chaper 21.9 3.9E+02 0.0084 26.7 7.5 41 270-310 70-110 (119)
92 KOG0804 Cytoplasmic Zn-finger 21.8 2.8E+02 0.0061 33.3 7.6 64 242-310 384-447 (493)
93 KOG0995 Centromere-associated 21.7 3.6E+02 0.0077 33.3 8.6 55 242-302 310-364 (581)
94 PF07794 DUF1633: Protein of u 21.4 73 0.0016 38.2 2.9 79 181-259 509-588 (790)
95 COG3879 Uncharacterized protei 21.2 5.8E+02 0.013 28.4 9.5 81 211-309 23-107 (247)
96 PF00170 bZIP_1: bZIP transcri 21.2 3.6E+02 0.0077 23.2 6.5 28 278-305 27-54 (64)
97 PF10458 Val_tRNA-synt_C: Valy 21.1 2.5E+02 0.0055 24.5 5.6 19 240-258 4-22 (66)
98 PF00170 bZIP_1: bZIP transcri 21.1 2.5E+02 0.0055 24.1 5.5 36 271-306 27-62 (64)
99 smart00338 BRLZ basic region l 21.0 2.2E+02 0.0049 24.5 5.2 35 275-309 24-58 (65)
100 PRK00295 hypothetical protein; 20.9 4.3E+02 0.0094 23.5 7.0 37 275-311 17-53 (68)
101 PRK13729 conjugal transfer pil 20.8 1.8E+02 0.0039 35.1 6.0 18 276-293 103-120 (475)
102 TIGR03185 DNA_S_dndD DNA sulfu 20.6 2.5E+02 0.0055 34.8 7.5 33 275-307 433-465 (650)
103 PF12329 TMF_DNA_bd: TATA elem 20.3 2.5E+02 0.0054 25.4 5.5 59 242-309 7-65 (74)
104 PRK00736 hypothetical protein; 20.2 4.8E+02 0.01 23.2 7.2 24 277-300 26-49 (68)
105 PF15188 CCDC-167: Coiled-coil 20.2 4.1E+02 0.009 25.0 6.9 54 239-305 11-64 (85)
106 PRK00736 hypothetical protein; 20.0 6.3E+02 0.014 22.5 9.2 37 275-311 17-53 (68)
107 PRK13169 DNA replication intia 20.0 4.4E+02 0.0095 25.9 7.4 29 275-303 27-55 (110)
No 1
>PF11995 DUF3490: Domain of unknown function (DUF3490); InterPro: IPR021881 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 160 amino acids in length. This domain is found associated with PF00225 from PFAM. This domain is found associated with PF00225 from PFAM. This domain has two conserved sequence motifs: EVE and ESA.
Probab=100.00 E-value=4.9e-89 Score=662.43 Aligned_cols=160 Identities=69% Similarity=1.121 Sum_probs=158.4
Q ss_pred HHHHHHHHHHHHhhhcccceeehheeeeeecCCCCCceEEEEEeehhhhhHHhhccCCCCCCCCccccHHHHHHHHHHHH
Q 002546 733 EFKRLQREIIELWHACNVSLVHRTYFFLLFKGDPKDSIYMEVEQRRLSFLKDSFSRGNDAIEDGRTVSLASSMKALRRER 812 (909)
Q Consensus 733 ~F~~~~~~IIeLW~~CnVSlvHRTyFfLLFkGd~~D~iYmEVElRRL~~lk~~~~~~~~~~~~~~~~s~~ss~k~l~~Er 812 (909)
+||+||++||||||+|||||||||||||||||||+|+||||||||||+|||+||++|++|++|++++|++||+|||+|||
T Consensus 1 ~Fe~qq~~IIeLW~~C~VsLvHRTyFfLLFkGdpaD~iYmEVElRRLs~Lk~~fs~~~~~~~~~~~~s~~sS~kaL~rER 80 (161)
T PF11995_consen 1 EFERQQQEIIELWHACNVSLVHRTYFFLLFKGDPADSIYMEVELRRLSFLKETFSEGGQAAGGGHTLSLASSIKALRRER 80 (161)
T ss_pred ChHHHHHHHHHHHHhcCcchhhhhhhhheecCCcccceEEEeehHHHHHHHHHhccCCcccCCCCcccHHHHHHHHHHHH
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCHHHHHHHHHhhCcCCCCcchhhHHhhhcCCcc-chhhHHHHHHHHHHHhcccCCCchhhhhhccccCC
Q 002546 813 HMLSQHVKKRFSREQRENLFLKWGIGLQTKHRSLQLAHLLWTSK-DLNHVAESAAIVSKLVTFVKPDQAFREMFGLNFAP 891 (909)
Q Consensus 813 ~~l~k~~~~rl~~~ere~ly~kwgi~l~~k~Rrlql~~~lWt~~-d~~hv~eSa~~Vaklv~f~e~~~~~kemf~l~f~~ 891 (909)
+||||||++|||.+|||+||.||||||+||||||||||+|||+| ||+||+|||+||||||||||||+|+||||||||+|
T Consensus 81 ~~L~k~m~~rls~eere~ly~kWgI~l~sK~RrlQL~~~LWt~~~d~~Hv~eSA~lVAkLvgf~e~g~~~KEMFgLnF~~ 160 (161)
T PF11995_consen 81 EMLAKQMQKRLSREEREELYKKWGIPLDSKQRRLQLANRLWTDTKDMEHVRESAELVAKLVGFVEPGQASKEMFGLNFTP 160 (161)
T ss_pred HHHHHHHHHhCCHHHHHHHHHhcCCCCcchHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhccccccHHHHHccCCCC
Confidence 99999999999999999999999999999999999999999999 99999999999999999999999999999999998
Q ss_pred C
Q 002546 892 R 892 (909)
Q Consensus 892 ~ 892 (909)
|
T Consensus 161 ~ 161 (161)
T PF11995_consen 161 P 161 (161)
T ss_pred C
Confidence 6
No 2
>KOG0245 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=4.8e-64 Score=585.56 Aligned_cols=307 Identities=35% Similarity=0.517 Sum_probs=269.3
Q ss_pred CCcHHHHHHHHHHHHHhcC--CceEEEEEEEEEEECCeeeecCC-CCC-CCceeeeCCCCCeEeccceEEEecCHHHHHH
Q 002546 2 IGITEYTMSDIYDYIEKHK--EREFVLKFSAMEIYNESVRDLLS-ADT-SPLRLLDDPERGTIVEKLTEETLKDWNHLKE 77 (909)
Q Consensus 2 ~GIIprav~dLF~~Iek~~--erefsV~vS~lEIYNE~V~DLLs-~~~-~~L~I~eDp~~g~~VegLtev~V~S~eell~ 77 (909)
+|||||+|+|||.+|...+ +..|.|.|||||||||+|+|||+ |.. ++|+++++|-.|+||++|+.+.|.|+.|+..
T Consensus 114 ~GIIPrlCEeLF~ri~~nq~~~~sy~VevSymEIYcErVrDLL~~p~~kg~LRVREHP~lGPYVedLS~~aV~Sy~dI~~ 193 (1221)
T KOG0245|consen 114 PGIIPRLCEELFSRIADNQSQQMSYSVEVSYMEIYCERVRDLLNAPKSKGGLRVREHPILGPYVEDLSKLAVTSYADIQD 193 (1221)
T ss_pred CCchhHHHHHHHHHHhhcccccceEEEEEeehhHHHHHHHHHhhCCCCCCCceeeccCccChhHhHhhhcccccHHHHHH
Confidence 6999999999999998655 67999999999999999999999 543 5899999999999999999999999999999
Q ss_pred HHHHHHhhccccccccCCCCCCceeEEEEEEEeecccccCCCCCcccccceeecccCcccccccccccchhhhhhhhhhh
Q 002546 78 LLSTCEAQRQIGETSLNETSSRSHQILRLTVESSACEFIGNDPSSLTATVNFVDLAGSERASQALSAGTRLKEGCHINRS 157 (909)
Q Consensus 78 LL~~G~~~R~~~sT~lN~~SSRSH~IFtI~Veq~~~e~~g~~~s~~~SkL~fVDLAGSER~skt~s~g~rlkEg~~INkS 157 (909)
+|..|++.|++++|.||++|||||+||+|++.+......++..+...|+|+|||||||||++.+++.|.|+|||.+||||
T Consensus 194 ~md~GNkqRTtAATnMNdtSSRSHaVFtIvftQk~~~~~~~l~sek~SKIsLVDLAGSERasstGa~G~RLKEGa~INKS 273 (1221)
T KOG0245|consen 194 LMDEGNKQRTTAATNMNDTSSRSHAVFTIVFTQKKHDQDTGLDSEKVSKISLVDLAGSERASSTGANGDRLKEGANINKS 273 (1221)
T ss_pred HHHhcchhhhhhhhccccccccceeEEEEEEEeeeccccCCCcceeeeeeeEEeccCcccccccCCCccchhcccccchH
Confidence 99999999999999999999999999999999988776666666889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcC------CCCCcccCCCchhHHHhHhhcCCCcccceEeecCCCCCChHHHHHHHHHHHHHhcccccce
Q 002546 158 LLTLGTVIRKLSK------GRNGHVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAKEVTTNAQ 231 (909)
Q Consensus 158 LlaLg~VI~ALs~------~k~~hIPYRDSKLTrLLqdSLGGNsrT~mIatVSPs~~~~eETLsTLrFAsRAK~Ikn~p~ 231 (909)
|++||.||.||+. ++..+||||||.||+||+++||||+||+|||++||++.||+|||+|||||+|||.|+|+++
T Consensus 274 LtTLGkVISALAe~~~~k~~ks~fIPYRDSVLTWLLkEnLGGNSKTaMIAAlSPAdiNyeETLSTLRYAdRAK~Iv~~av 353 (1221)
T KOG0245|consen 274 LTTLGKVISALAESQKGKKKKSDFIPYRDSVLTWLLKENLGGNSKTAMIAALSPADINYEETLSTLRYADRAKQIVNNAV 353 (1221)
T ss_pred HHHHHHHHHHHHHHhccCCCCCccccchHHHHHHHHHHhcCCcchhhhhhccChhhcChHHHHHHHHHhhHhhhhhccce
Confidence 9999999999973 2345999999999999999999999999999999999999999999999999999999999
Q ss_pred eccccCHHHHHHHHHHHHHHHHHHHhcCCCCCCC--------------cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002546 232 VNIVMSDKALVKHLQRELSRLENELRGSGPVFIT--------------PDSVSVLREKDLRIEKLEKEVDELTMQRDLAR 297 (909)
Q Consensus 232 vN~~~s~k~lik~Lq~Ei~~Le~eLr~~~~~~~~--------------~d~~~~l~ekd~~IekLe~ei~eL~~q~d~aq 297 (909)
||+.+.++ +|+.|++||.+|+..|+..+..... ......|+|.+..++.|.+...+--.+-+..+
T Consensus 354 VNEdpnaK-LIRELreEv~rLksll~~~~~~~~~~~~~p~~~~~~~~~e~~~~~L~E~Ek~mael~etW~EKl~~aEair 432 (1221)
T KOG0245|consen 354 VNEDPNAK-LIRELREEVARLKSLLRAQGLGDIAVEGSPSALLSQPEIEELRERLQETEKIMAELNETWEEKLREAEAIR 432 (1221)
T ss_pred eCCCccHH-HHHHHHHHHHHHHHHHhccccccccccCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99887776 9999999999999999887644322 01234455666666666666555555555555
Q ss_pred HHHHHHHHHhcC
Q 002546 298 TEVENLLRGAGK 309 (909)
Q Consensus 298 ~el~~L~~~~~~ 309 (909)
.+-..+++.+|-
T Consensus 433 ~e~~~~L~emGv 444 (1221)
T KOG0245|consen 433 MEREALLAEMGV 444 (1221)
T ss_pred HhHHHHHHhcCc
Confidence 555556666654
No 3
>KOG0242 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=7.6e-62 Score=572.24 Aligned_cols=298 Identities=56% Similarity=0.759 Sum_probs=274.5
Q ss_pred CCcHHHHHHHHHHHHHhcCCceEEEEEEEEEEECCeeeecCCCCCCCceeeeCCCCCeEeccceEEEecCHHHHHHHHHH
Q 002546 2 IGITEYTMSDIYDYIEKHKEREFVLKFSAMEIYNESVRDLLSADTSPLRLLDDPERGTIVEKLTEETLKDWNHLKELLST 81 (909)
Q Consensus 2 ~GIIprav~dLF~~Iek~~erefsV~vS~lEIYNE~V~DLLs~~~~~L~I~eDp~~g~~VegLtev~V~S~eell~LL~~ 81 (909)
|||||+++.|||++|.++.++.|.|+|||+|||||.|+|||+++..+|+|++|+.+|++|.||+++.|.|+++++++|..
T Consensus 111 PGii~la~~dif~~I~~~~~r~f~v~vSYlEIYNE~I~DLL~~~~~~L~irED~~~gi~V~gL~e~~v~s~e~~~~ll~~ 190 (675)
T KOG0242|consen 111 PGIIPLAMKDIFEKIDKSGEREFSVRVSYLEIYNERIRDLLNPDGGDLRLREDSEGGIVVPGLTEETVSSREELLELLQK 190 (675)
T ss_pred CCeeehHHHHHHHHHHhcCCceeEEEEEEEEEeccccccccCCCCCCceEeEcCCCCEEecCCeeecCCCHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccccccccCCCCCCceeEEEEEEEeecccccCCCCCcccccceeecccCcccccccccccchhhhhhhhhhhHHHH
Q 002546 82 CEAQRQIGETSLNETSSRSHQILRLTVESSACEFIGNDPSSLTATVNFVDLAGSERASQALSAGTRLKEGCHINRSLLTL 161 (909)
Q Consensus 82 G~~~R~~~sT~lN~~SSRSH~IFtI~Veq~~~e~~g~~~s~~~SkL~fVDLAGSER~skt~s~g~rlkEg~~INkSLlaL 161 (909)
|+++|+++.|.+|..|||||+||+|+|++...... + ..++|+|||||||||++++++.|.|++||++||+||++|
T Consensus 191 g~~~R~~g~T~~N~~SSRSHaIl~i~i~s~~~~~~----~-~~s~L~lIDLAGSERas~T~~~G~RlkEG~~INrSLlaL 265 (675)
T KOG0242|consen 191 GNKNRTTGETNLNEQSSRSHAILRITVESRGREAS----S-RVSKLNLIDLAGSERASRTGNEGVRLKEGAHINRSLLAL 265 (675)
T ss_pred hhccCcccccccccccchhhheeeEEEEecccccc----c-hhheehhhhhhhhhhhhhhhccceeccccchhhHHHHHH
Confidence 99999999999999999999999999999876432 2 778999999999999999999999999999999999999
Q ss_pred HHHHHHhcCC-CCCcccCCCchhHHHhHhhcCCCcccceEeecCCCCCChHHHHHHHHHHHHHhcccccceeccccCHHH
Q 002546 162 GTVIRKLSKG-RNGHVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAKEVTTNAQVNIVMSDKA 240 (909)
Q Consensus 162 g~VI~ALs~~-k~~hIPYRDSKLTrLLqdSLGGNsrT~mIatVSPs~~~~eETLsTLrFAsRAK~Ikn~p~vN~~~s~k~ 240 (909)
|+||++|+++ ..+||||||||||||||++|||||+|+|||||+|+..+++||.+||+||+|||+|++++.+|+++.++.
T Consensus 266 gtVI~~Ls~~~~~~hipYRDSKLTRiLq~sLgGn~rt~~I~tisp~~~~~~eT~nTL~fAsrak~i~~~~~~n~~~~~~~ 345 (675)
T KOG0242|consen 266 GTVINKLSEGKRPRHIPYRDSKLTRLLQDSLGGNARTAIIATISPSSSHYEETKNTLKFASRAKEITTKAQVNVILSDKA 345 (675)
T ss_pred HHHHHHHccccccCCCCccccHHHHhchhhcCCCccEEEEEEeCchhhHHHHHHHHHHHHHHhhhcccccccceecchhh
Confidence 9999999988 567999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCcchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 002546 241 LVKHLQRELSRLENELRGSGPVFITPDSVSVLREKDLRIEKLE-KEVDELTMQRDLARTEVENLLRGAGKG 310 (909)
Q Consensus 241 lik~Lq~Ei~~Le~eLr~~~~~~~~~d~~~~l~ekd~~IekLe-~ei~eL~~q~d~aq~el~~L~~~~~~~ 310 (909)
+++.+++++..|+.++.......... .+....+.+++ +++.++..+++.++...+.+.......
T Consensus 346 ~~~~~~~~i~~l~~e~~~~~~~~~~~------~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (675)
T KOG0242|consen 346 LLKYLQREIAELEAELERLKKKLEPE------REQELLIQKLEKEEVEELLPQRSEIQSLVELLKRLSASR 410 (675)
T ss_pred hhHHHHHHHHHHHHHHHhhccccccc------hhhHHHHhHhhhhhHhhhhhhhhHHHHHHHHHhhhcccc
Confidence 99999999999999998765442211 25566677787 788888888888888887776665543
No 4
>KOG4280 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.6e-61 Score=553.65 Aligned_cols=258 Identities=42% Similarity=0.628 Sum_probs=241.3
Q ss_pred CCCcHHHHHHHHHHHHHhcCC-ceEEEEEEEEEEECCeeeecCCCCC-CCceeeeCCCCCeEeccceEEEecCHHHHHHH
Q 002546 1 MIGITEYTMSDIYDYIEKHKE-REFVLKFSAMEIYNESVRDLLSADT-SPLRLLDDPERGTIVEKLTEETLKDWNHLKEL 78 (909)
Q Consensus 1 m~GIIprav~dLF~~Iek~~e-refsV~vS~lEIYNE~V~DLLs~~~-~~L~I~eDp~~g~~VegLtev~V~S~eell~L 78 (909)
.+|||||++.+||..|++.++ ..|+|+|||+|||||.|+|||++.. ..+.++++|..|+||+||+++.|.++++++.+
T Consensus 110 ~~GiiPraf~~LF~~I~~~~~~~~f~vrvS~lEiYnE~i~DLL~~~~~~~l~lre~p~~Gv~V~nlse~~v~s~~d~~~~ 189 (574)
T KOG4280|consen 110 LRGLIPRAFEHLFRHIDERKEKTRFLVRVSYLEIYNESIRDLLSPVNPKGLELREDPKCGVYVENLSEMDVESAEDAQQL 189 (574)
T ss_pred hCCchhHHHHHHHHHHHhccccceEEEEeehHHHHhHHHHHHhCccCcCCceeeEcCCCceEecCcceeecCCHHHHHHH
Confidence 479999999999999998874 4699999999999999999999988 48999999999999999999999999999999
Q ss_pred HHHHHhhccccccccCCCCCCceeEEEEEEEeecccccCCCCCcccccceeecccCcccccccccccchhhhhhhhhhhH
Q 002546 79 LSTCEAQRQIGETSLNETSSRSHQILRLTVESSACEFIGNDPSSLTATVNFVDLAGSERASQALSAGTRLKEGCHINRSL 158 (909)
Q Consensus 79 L~~G~~~R~~~sT~lN~~SSRSH~IFtI~Veq~~~e~~g~~~s~~~SkL~fVDLAGSER~skt~s~g~rlkEg~~INkSL 158 (909)
|..|.++|.+++|.||..|||||+||+|+|++... ..++......++|+|||||||||..++++.|.+++|+.+||+||
T Consensus 190 l~~G~~nR~vgat~mn~~SsRSH~ift~~i~~~~~-~~~~~~~~~~~rlnlvDLagsEr~~~tga~G~rlkEa~~IN~SL 268 (574)
T KOG4280|consen 190 LVVGLANRRVGATSMNEESSRSHAIFTIHIESSEK-SDGGLMSGRSSKLNLVDLAGSERQSKTGAEGERLKEATNINLSL 268 (574)
T ss_pred HHHHHhhcchhhccCCcccccceEEEEEEEEeecc-cCCCccccccceeeeeeccchhhhcccCccchhhhhhcccchhH
Confidence 99999999999999999999999999999999322 12234447899999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCcccCCCchhHHHhHhhcCCCcccceEeecCCCCCChHHHHHHHHHHHHHhcccccceeccccCH
Q 002546 159 LTLGTVIRKLSKGRNGHVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAKEVTTNAQVNIVMSD 238 (909)
Q Consensus 159 laLg~VI~ALs~~k~~hIPYRDSKLTrLLqdSLGGNsrT~mIatVSPs~~~~eETLsTLrFAsRAK~Ikn~p~vN~~~s~ 238 (909)
++||+||.+|+++++.||||||||||+||||+|||||+|+|||||+|+..+++||++||+||+|||.|+|+|++|.++.
T Consensus 269 s~LG~vI~aLvd~~~~HIPYRdSkLT~LLqdSLGGN~kT~mianvsp~~~~~~ETlsTLrfA~Rak~I~nk~~ined~~- 347 (574)
T KOG4280|consen 269 SALGNVISALVDGSKTHIPYRDSKLTRLLQDSLGGNSKTTMIANVSPSSDNYEETLSTLRFAQRAKAIKNKPVINEDPK- 347 (574)
T ss_pred HHHHHHHHHHhccccCCCCcchhHHHHHHHHHcCCCceEEEEEecCchhhhhHHHHHHHHHHHHHHHhhccccccCCcc-
Confidence 9999999999999888999999999999999999999999999999999999999999999999999999999997765
Q ss_pred HHHHHHHHHHHHHHHHHHhcCC
Q 002546 239 KALVKHLQRELSRLENELRGSG 260 (909)
Q Consensus 239 k~lik~Lq~Ei~~Le~eLr~~~ 260 (909)
.+.++.||+||+.|+.+|...+
T Consensus 348 ~~~~~~lq~ei~~Lk~~l~~~~ 369 (574)
T KOG4280|consen 348 DALLRELQEEIERLKKELDPGG 369 (574)
T ss_pred hhhHHHHHHHHHHHHHhhcccc
Confidence 5689999999999999996653
No 5
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=2.3e-59 Score=555.25 Aligned_cols=292 Identities=37% Similarity=0.562 Sum_probs=252.2
Q ss_pred CCcHHHHHHHHHHHHHhcCCceEEEEEEEEEEECCeeeecCCCCCC---CceeeeCC-----CCCeEeccceEEEecCHH
Q 002546 2 IGITEYTMSDIYDYIEKHKEREFVLKFSAMEIYNESVRDLLSADTS---PLRLLDDP-----ERGTIVEKLTEETLKDWN 73 (909)
Q Consensus 2 ~GIIprav~dLF~~Iek~~erefsV~vS~lEIYNE~V~DLLs~~~~---~L~I~eDp-----~~g~~VegLtev~V~S~e 73 (909)
.|||||++.+||+.++... .+|+|+|||+|+|||.++|||++... .+++.+++ .+|++|+||.++.|.++.
T Consensus 161 aGIIPRal~~IFd~Le~~~-~EYsvKVSfLELYNEEl~DLLa~~~~~~~~~~~k~~~~~~~~kggV~vkGlEEi~V~~A~ 239 (1041)
T KOG0243|consen 161 AGIIPRALRQIFDTLEAQG-AEYSVKVSFLELYNEELTDLLASEDTSDKKLRIKDDSTIVDGKGGVIVKGLEEIIVTNAD 239 (1041)
T ss_pred CCcchHHHHHHHHHHHhcC-CeEEEEEEehhhhhHHHHHhcCCccccccccccccCCcccCCcCcEEEecceeeeecchh
Confidence 6999999999999998766 79999999999999999999998654 45555555 689999999999999999
Q ss_pred HHHHHHHHHHhhccccccccCCCCCCceeEEEEEEEeecccccCCCCCcccccceeecccCcccccccccccchhhhhhh
Q 002546 74 HLKELLSTCEAQRQIGETSLNETSSRSHQILRLTVESSACEFIGNDPSSLTATVNFVDLAGSERASQALSAGTRLKEGCH 153 (909)
Q Consensus 74 ell~LL~~G~~~R~~~sT~lN~~SSRSH~IFtI~Veq~~~e~~g~~~s~~~SkL~fVDLAGSER~skt~s~g~rlkEg~~ 153 (909)
+++.+|..|.+.|++++|.||..|||||+||+|+|....... +++.....|+|+||||||||-.+++|+.+.|.+|++.
T Consensus 240 ei~klLekGs~kRrtAaTl~N~~SSRSHsIFsItvhike~t~-~geelvK~GKLNLVDLAGSENI~RSGA~~~RArEAG~ 318 (1041)
T KOG0243|consen 240 EIYKLLEKGSKKRRTAATLMNDQSSRSHSIFSITVHIKENTP-EGEELVKIGKLNLVDLAGSENISRSGARNGRAREAGE 318 (1041)
T ss_pred HHHHHHHhhhhHhHHHHHHhhhhccccceEEEEEEEEecCCC-cchhhHhhcccceeeccccccccccccccchhHHhhh
Confidence 999999999999999999999999999999999998776443 2334478999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHhcCCCCCcccCCCchhHHHhHhhcCCCcccceEeecCCCCCChHHHHHHHHHHHHHhcccccceec
Q 002546 154 INRSLLTLGTVIRKLSKGRNGHVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAKEVTTNAQVN 233 (909)
Q Consensus 154 INkSLlaLg~VI~ALs~~k~~hIPYRDSKLTrLLqdSLGGNsrT~mIatVSPs~~~~eETLsTLrFAsRAK~Ikn~p~vN 233 (909)
||+||++||+||+||.. +.+|||||+|||||||||||||..+|+|||||||+..+++||++||.||.|||.|+|+|.+|
T Consensus 319 INqSLLTLGRVInALVe-~s~HIPYRESKLTRLLQDSLGGkTKT~iIATiSPa~~~lEETlSTLEYA~RAKnIkNKPevN 397 (1041)
T KOG0243|consen 319 INQSLLTLGRVINALVE-HSGHIPYRESKLTRLLQDSLGGKTKTCIIATISPAKHNLEETLSTLEYAHRAKNIKNKPEVN 397 (1041)
T ss_pred hhHHHHHHHHHHHHHHc-cCCCCCchHHHHHHHHHHHhCCCceeEEEEEeCCCcccHHHHHHHHHHHHHhhhccCCCccc
Confidence 99999999999999997 46699999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHhcCC---CCCCCcchh----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002546 234 IVMSDKALVKHLQRELSRLENELRGSG---PVFITPDSV----SVLREKDLRIEKLEKEVDELTMQRDLA 296 (909)
Q Consensus 234 ~~~s~k~lik~Lq~Ei~~Le~eLr~~~---~~~~~~d~~----~~l~ekd~~IekLe~ei~eL~~q~d~a 296 (909)
+.+..+.+++.|-.||++|+.+|.... +.++..+.. ....++.++|++|+.++..+..++..+
T Consensus 398 Qkl~K~~llKd~~~EIerLK~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~ 467 (1041)
T KOG0243|consen 398 QKLMKKTLLKDLYEEIERLKRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDL 467 (1041)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999996653 223322222 122344455555555554444443333
No 6
>PLN03188 kinesin-12 family protein; Provisional
Probab=100.00 E-value=1.1e-55 Score=528.40 Aligned_cols=258 Identities=39% Similarity=0.591 Sum_probs=235.2
Q ss_pred CCcHHHHHHHHHHHHHhc------CCceEEEEEEEEEEECCeeeecCCCCCCCceeeeCCCCCeEeccceEEEecCHHHH
Q 002546 2 IGITEYTMSDIYDYIEKH------KEREFVLKFSAMEIYNESVRDLLSADTSPLRLLDDPERGTIVEKLTEETLKDWNHL 75 (909)
Q Consensus 2 ~GIIprav~dLF~~Iek~------~erefsV~vS~lEIYNE~V~DLLs~~~~~L~I~eDp~~g~~VegLtev~V~S~eel 75 (909)
+|||||++++||++|... ....|.|+|||+|||||+|+|||++....+.|++|+.+|++|.||+++.|.+++++
T Consensus 200 ~GIIPRaledLF~~I~e~q~k~~d~~~~y~V~vSyLEIYNEkI~DLLsp~~k~L~IRED~kgGv~VeGLTEv~V~S~ED~ 279 (1320)
T PLN03188 200 QGLTPRVFERLFARINEEQIKHADRQLKYQCRCSFLEIYNEQITDLLDPSQKNLQIREDVKSGVYVENLTEEYVKTMKDV 279 (1320)
T ss_pred CCchHHHHHHHHHHHHhhhhhccccccceEEEEEEEeeecCcceeccccccCCceEEEcCCCCeEeCCCeEEeCCCHHHH
Confidence 699999999999999743 24589999999999999999999998889999999999999999999999999999
Q ss_pred HHHHHHHHhhccccccccCCCCCCceeEEEEEEEeecccccCCCCCcccccceeecccCcccccccccccchhhhhhhhh
Q 002546 76 KELLSTCEAQRQIGETSLNETSSRSHQILRLTVESSACEFIGNDPSSLTATVNFVDLAGSERASQALSAGTRLKEGCHIN 155 (909)
Q Consensus 76 l~LL~~G~~~R~~~sT~lN~~SSRSH~IFtI~Veq~~~e~~g~~~s~~~SkL~fVDLAGSER~skt~s~g~rlkEg~~IN 155 (909)
+.+|..|..+|++++|.+|..|||||+||+|+|++.......+......|+|+|||||||||...+++.|.+++|+++||
T Consensus 280 l~LL~~G~~nR~tasT~mN~~SSRSHaIFtI~Ves~~k~~~dg~ss~r~SkLnLVDLAGSER~kkTga~G~RLkEA~~IN 359 (1320)
T PLN03188 280 TQLLIKGLSNRRTGATSINAESSRSHSVFTCVVESRCKSVADGLSSFKTSRINLVDLAGSERQKLTGAAGDRLKEAGNIN 359 (1320)
T ss_pred HHHHHHHhccceeccCCCCCccCCCceeEEEEEEEeecccCCCCcceEEEEEEEEECCCchhccccCcccHHHHHHHHHh
Confidence 99999999999999999999999999999999998654333333345789999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhcC----CCCCcccCCCchhHHHhHhhcCCCcccceEeecCCCCCChHHHHHHHHHHHHHhcccccce
Q 002546 156 RSLLTLGTVIRKLSK----GRNGHVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAKEVTTNAQ 231 (909)
Q Consensus 156 kSLlaLg~VI~ALs~----~k~~hIPYRDSKLTrLLqdSLGGNsrT~mIatVSPs~~~~eETLsTLrFAsRAK~Ikn~p~ 231 (909)
+||++||+||.+|+. ++..||||||||||+||||+|||||+|+|||||||+..+++||++||+||+|||.|+|+|+
T Consensus 360 KSLsaLGnVI~ALae~Sq~gk~~HIPYRDSKLTrLLQDSLGGNSKTvMIa~VSPs~~~~eETLSTLrFAsRAK~IKNkpv 439 (1320)
T PLN03188 360 RSLSQLGNLINILAEISQTGKQRHIPYRDSRLTFLLQESLGGNAKLAMVCAISPSQSCKSETFSTLRFAQRAKAIKNKAV 439 (1320)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCcCCCCcchHHHHHHHhcCCCceEEEEEecCCchhhHHHHHHHHHHHHHHhhcCccce
Confidence 999999999999974 3456999999999999999999999999999999999999999999999999999999999
Q ss_pred eccccCH-----HHHHHHHHHHHHHHHHHHhcC
Q 002546 232 VNIVMSD-----KALVKHLQRELSRLENELRGS 259 (909)
Q Consensus 232 vN~~~s~-----k~lik~Lq~Ei~~Le~eLr~~ 259 (909)
+|..+.+ ..+|++|+.|+.+|+.....+
T Consensus 440 vNe~~~~~vn~LrelIr~Lk~EL~rLK~~~~~p 472 (1320)
T PLN03188 440 VNEVMQDDVNFLREVIRQLRDELQRVKANGNNP 472 (1320)
T ss_pred eccchhhhHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 9987543 357888899999998886544
No 7
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=100.00 E-value=3.9e-56 Score=499.33 Aligned_cols=304 Identities=33% Similarity=0.500 Sum_probs=258.6
Q ss_pred CCcHHHHHHHHHHHHHhcCC-ceEEEEEEEEEEECCeeeecCCCCCCCceeeeCCCCCeEeccceEEEecCHHHHHHHHH
Q 002546 2 IGITEYTMSDIYDYIEKHKE-REFVLKFSAMEIYNESVRDLLSADTSPLRLLDDPERGTIVEKLTEETLKDWNHLKELLS 80 (909)
Q Consensus 2 ~GIIprav~dLF~~Iek~~e-refsV~vS~lEIYNE~V~DLLs~~~~~L~I~eDp~~g~~VegLtev~V~S~eell~LL~ 80 (909)
.|||||++++||++|....+ .+|.|+|||+|||+|+++|||++.+.++.+++|...+++|+|+++..|.+++++++.|+
T Consensus 110 ~GIipRi~~diF~~Iys~~~n~efhVkVsy~EIYmEKi~DLL~~~k~nlsvheDK~~v~~vkG~t~~~v~s~d~v~~~i~ 189 (607)
T KOG0240|consen 110 MGIIPRILNDIFDHIYSMEENLEFHVKVSYFEIYMEKIRDLLDPEKTNLSVHEDKNRVPYVKGVTERFVSSPDEVLDVID 189 (607)
T ss_pred cCcHHHHHHHHHHHHhcCcccceEEEEEEeehhhhhHHHHHhCcccCCceeecccCCCceecCceeEEecCHHHHHHHHh
Confidence 59999999999999998774 69999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccccccccCCCCCCceeEEEEEEEeecccccCCCCCcccccceeecccCcccccccccccchhhhhhhhhhhHHH
Q 002546 81 TCEAQRQIGETSLNETSSRSHQILRLTVESSACEFIGNDPSSLTATVNFVDLAGSERASQALSAGTRLKEGCHINRSLLT 160 (909)
Q Consensus 81 ~G~~~R~~~sT~lN~~SSRSH~IFtI~Veq~~~e~~g~~~s~~~SkL~fVDLAGSER~skt~s~g~rlkEg~~INkSLla 160 (909)
.|..+|+++.|.||.+|||||.||+|+|.+.+.+ ......|+|+||||||||+++++++.|..+.|+++||+||.+
T Consensus 190 ~g~~nr~va~t~mn~~sSRSHsIF~i~VkQ~n~e----~~~~~~gkLyLVDLaGSEkvsKtga~g~vleEaK~INkSLsa 265 (607)
T KOG0240|consen 190 EGKSNRHVAVTNMNEHSSRSHSIFLIHVKQENVE----DKRKLSGKLYLVDLAGSEKVSKTGAEGAVLEEAKNINKSLSA 265 (607)
T ss_pred cccccchhhhccccccccccceEEEEEEEecccc----chhhccccEEEEEcccccccCCCCccchhHHHHhhhhhhHHH
Confidence 9999999999999999999999999999998753 233689999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCcccCCCchhHHHhHhhcCCCcccceEeecCCCCCChHHHHHHHHHHHHHhcccccceeccccCHHH
Q 002546 161 LGTVIRKLSKGRNGHVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAKEVTTNAQVNIVMSDKA 240 (909)
Q Consensus 161 Lg~VI~ALs~~k~~hIPYRDSKLTrLLqdSLGGNsrT~mIatVSPs~~~~eETLsTLrFAsRAK~Ikn~p~vN~~~s~k~ 240 (909)
||+||++|+.|...|||||||||||||||+|||||||.||+|++|+..+..||.+||+|+.|||.|+|.+.+|...+..+
T Consensus 266 LgnvI~aLa~g~~shipYRDSKLTRILqdSLGGNsRTtlIi~csPss~n~~ET~STl~fg~rak~ikN~v~~n~e~~~e~ 345 (607)
T KOG0240|consen 266 LGNVINALAEGPKSHIPYRDSKLTRILQDSLGGNSRTTLIICCSPSSLNEAETKSTLRFGNRAKTIKNTVWVNLELTAEE 345 (607)
T ss_pred HHHHHHHHhcCCCCCCcchhhHHHHHHHHHhCCCcceEEEEecCCccccccccccchhhccccccccchhhhhhHhhHHH
Confidence 99999999999888999999999999999999999999999999999999999999999999999999999999888877
Q ss_pred HHHHHHHH----------HHHHHHHHhcCCCCCCC-cch-------h-------------HHHHH-HHHHHHHHHHHHHH
Q 002546 241 LVKHLQRE----------LSRLENELRGSGPVFIT-PDS-------V-------------SVLRE-KDLRIEKLEKEVDE 288 (909)
Q Consensus 241 lik~Lq~E----------i~~Le~eLr~~~~~~~~-~d~-------~-------------~~l~e-kd~~IekLe~ei~e 288 (909)
..+.|..+ +..++..|......... .+. . ..+.. .+.....+++++..
T Consensus 346 ~~r~~e~~kd~~~~~~~~~~~~~~sl~~~~~~E~~~~de~~~~~~~~k~~~~~~~~~~~i~~~~~~~~~~~~~~~e~~~~ 425 (607)
T KOG0240|consen 346 WKRKLEKKKDKNVALKEELEKLRNSLKRWRNGEEVKEDEDFSLKEEAKMSAILSEEEMSITKLKGSLEEEEDILTERIES 425 (607)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhhhcccCcccchhhhhHHHHHHhhhhhhhhhhhhhhcccchHHHHHHHHHHHHH
Confidence 76665444 33333333322111000 000 0 00000 13445667888888
Q ss_pred HHHHHHHHHHHHHHHHHHhcC
Q 002546 289 LTMQRDLARTEVENLLRGAGK 309 (909)
Q Consensus 289 L~~q~d~aq~el~~L~~~~~~ 309 (909)
|..|+|....+++...+...+
T Consensus 426 L~qqlD~kd~~~n~~sqL~~~ 446 (607)
T KOG0240|consen 426 LYQQLDQKDDQINKQSQLMEK 446 (607)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 888888877777654444443
No 8
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=6.8e-54 Score=492.11 Aligned_cols=258 Identities=36% Similarity=0.588 Sum_probs=240.6
Q ss_pred CCcHHHHHHHHHHHHHhcC--CceEEEEEEEEEEECCeeeecCCCCC--CCceeeeCCCCCeEeccceEEEecCHHHHHH
Q 002546 2 IGITEYTMSDIYDYIEKHK--EREFVLKFSAMEIYNESVRDLLSADT--SPLRLLDDPERGTIVEKLTEETLKDWNHLKE 77 (909)
Q Consensus 2 ~GIIprav~dLF~~Iek~~--erefsV~vS~lEIYNE~V~DLLs~~~--~~L~I~eDp~~g~~VegLtev~V~S~eell~ 77 (909)
+|||||.+.+||.+|.+.. ...|.|.|||+|||||+|||||+|.. ..++++++.-.|+||.||++..|.|++++..
T Consensus 118 pGiIPrlc~~lFe~I~k~~n~~~tfkVeVSymEIynEkv~DLLdPk~ssqtlkVrehsvlGp~vdGLS~laV~S~qdId~ 197 (1714)
T KOG0241|consen 118 PGIIPRLCESLFERIDKESNPSQTFKVEVSYMEIYNEKVRDLLDPKGSSQTLKVREHSVLGPYVDGLSQLAVTSFQDIDS 197 (1714)
T ss_pred CCchhHHHHHHHHHHHhccCCCceEEEEEEHHHHhhcchhhhhCCCCCcceeEEeecccccccccchhhhhcccHHHHHH
Confidence 7999999999999998654 67999999999999999999999876 4799999999999999999999999999999
Q ss_pred HHHHHHhhccccccccCCCCCCceeEEEEEEEeecccccCCCCCcccccceeecccCcccccccccccchhhhhhhhhhh
Q 002546 78 LLSTCEAQRQIGETSLNETSSRSHQILRLTVESSACEFIGNDPSSLTATVNFVDLAGSERASQALSAGTRLKEGCHINRS 157 (909)
Q Consensus 78 LL~~G~~~R~~~sT~lN~~SSRSH~IFtI~Veq~~~e~~g~~~s~~~SkL~fVDLAGSER~skt~s~g~rlkEg~~INkS 157 (909)
++..|++.|++++|+||..|||||+||.|.|++.-.+...+......++|.+||||||||++++++.|.+++||.+||+|
T Consensus 198 lm~egnKsrtvaatnmn~EssrsHaVFslvvtQ~l~D~ktg~SgeKvsklslVDLAgserasktga~g~rlkegsNinkS 277 (1714)
T KOG0241|consen 198 LMSEGNKSRTVAATNMNEESSRSHAVFSLVVTQTLYDLKTGHSGEKVSKLSLVDLAGSERASKTGAAGSRLKEGSNINKS 277 (1714)
T ss_pred HHHhccccceeeeecccccccccceeEEEEEeeEEeccccCcchhheeeeeEEEeccccccccccchhhhhhhcCCcchh
Confidence 99999999999999999999999999999999987665444444788999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcC-----CCCCcccCCCchhHHHhHhhcCCCcccceEeecCCCCCChHHHHHHHHHHHHHhccccccee
Q 002546 158 LLTLGTVIRKLSK-----GRNGHVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAKEVTTNAQV 232 (909)
Q Consensus 158 LlaLg~VI~ALs~-----~k~~hIPYRDSKLTrLLqdSLGGNsrT~mIatVSPs~~~~eETLsTLrFAsRAK~Ikn~p~v 232 (909)
|++||.||.||+. |+..+||||||.||+||||+|||||+|+||+||||+..+|+|||+||+||.|||.|+|++++
T Consensus 278 LttLglVIsaLadq~n~kgkdKfvPYrDSVLTwLLkD~LGGNsrTvMiatvSPaAdnyeeTlStLRYadrAkrIvN~avv 357 (1714)
T KOG0241|consen 278 LTTLGLVISALADQKNGKGKDKFVPYRDSVLTWLLKDNLGGNSRTVMIATVSPAADNYEETLSTLRYADRAKRIVNHAVV 357 (1714)
T ss_pred hHHHHHHHHHHHHhhcCCCccccccchhHHHHHHHHhhcCCCceeEEEEEecccccchHHHHHHHHHHHHHHHhhccccc
Confidence 9999999999984 34569999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCHHHHHHHHHHHHHHHHHHHhcCC
Q 002546 233 NIVMSDKALVKHLQRELSRLENELRGSG 260 (909)
Q Consensus 233 N~~~s~k~lik~Lq~Ei~~Le~eLr~~~ 260 (909)
|..+..+ .++.|++|+..|+.+|.+..
T Consensus 358 Nedpnar-virElReEve~lr~qL~~ae 384 (1714)
T KOG0241|consen 358 NEDPNAR-VIRELREEVEKLREQLEQAE 384 (1714)
T ss_pred cCCchHH-HHHHHHHHHHHHHHHHhhhh
Confidence 9776555 89999999999999998753
No 9
>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second
Probab=100.00 E-value=7.7e-53 Score=463.03 Aligned_cols=223 Identities=39% Similarity=0.588 Sum_probs=207.1
Q ss_pred CCcHHHHHHHHHHHHHhc-----CCceEEEEEEEEEEECCeeeecCCCCCCCceeeeCCCCCeEeccceEEEecCHHHHH
Q 002546 2 IGITEYTMSDIYDYIEKH-----KEREFVLKFSAMEIYNESVRDLLSADTSPLRLLDDPERGTIVEKLTEETLKDWNHLK 76 (909)
Q Consensus 2 ~GIIprav~dLF~~Iek~-----~erefsV~vS~lEIYNE~V~DLLs~~~~~L~I~eDp~~g~~VegLtev~V~S~eell 76 (909)
+|||||++++||..++.. .+..|.|++||+|||||+|+|||++....+++++++.+|++|+|++++.|.+++|++
T Consensus 107 ~Giipr~~~~Lf~~i~~~~~~~~~~~~~~v~~S~~EIyne~v~DLL~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~ 186 (337)
T cd01373 107 QGVIPRIFEYLFSLIQREEEKRGDGLKFLCKCSFLEIYNEQITDLLDPTSRNLKIREDIKKGVYVENLTEEYVSSYEDVY 186 (337)
T ss_pred CCHHHHHHHHHHHHHHhhhhhcccCceEEEEEEEEeecCCEeeeCCCCCCCCceEEECCCCCEEeCCCEEEEeCCHHHHH
Confidence 699999999999999754 346899999999999999999999988899999999999999999999999999999
Q ss_pred HHHHHHHhhccccccccCCCCCCceeEEEEEEEeecccccCCCCCcccccceeecccCcccccccccccchhhhhhhhhh
Q 002546 77 ELLSTCEAQRQIGETSLNETSSRSHQILRLTVESSACEFIGNDPSSLTATVNFVDLAGSERASQALSAGTRLKEGCHINR 156 (909)
Q Consensus 77 ~LL~~G~~~R~~~sT~lN~~SSRSH~IFtI~Veq~~~e~~g~~~s~~~SkL~fVDLAGSER~skt~s~g~rlkEg~~INk 156 (909)
.+|..|.++|++++|.+|..|||||+||+|+|.+..... .......++|+|||||||||...+++.|.+++|+++||+
T Consensus 187 ~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~~--~~~~~~~s~l~~VDLAGSEr~~~~~~~g~~~~E~~~IN~ 264 (337)
T cd01373 187 QVLLKGLSNRKVAATSMNSESSRSHAVFTCTIESWEKKA--SSTNIRTSRLNLVDLAGSERQKDDGAEGVRLKEAKNINK 264 (337)
T ss_pred HHHHHHHhccCcccCcCCCCCCCccEEEEEEEEEeecCC--CCCcEEEEEEEEEECCCCCcccccCCccHhhhhhccccH
Confidence 999999999999999999999999999999998765321 112356799999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhcC---CCCCcccCCCchhHHHhHhhcCCCcccceEeecCCCCCChHHHHHHHHHHHHHhcc
Q 002546 157 SLLTLGTVIRKLSK---GRNGHVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAKEV 226 (909)
Q Consensus 157 SLlaLg~VI~ALs~---~k~~hIPYRDSKLTrLLqdSLGGNsrT~mIatVSPs~~~~eETLsTLrFAsRAK~I 226 (909)
||++|++||.+|+. ++..||||||||||+||+|+|||||+|+|||||||+..+++||++||+||+|||+|
T Consensus 265 SL~~L~~vi~aL~~~~~~~~~~ipyR~SkLT~lL~dsLggns~t~~I~~vsP~~~~~~eTl~TL~fa~rak~I 337 (337)
T cd01373 265 SLSTLGHVIMALVDVAHGKQRHVPYRDSKLTFLLRDSLGGNAKTTIIANVSPSSKCFGETLSTLKFAQRAKLI 337 (337)
T ss_pred HHHHHHHHHHHHHhhccCCCCccCCcccHHHHHHHHhcCCCceEEEEEEECCCcccHHHHHHHHHHHHHhhcC
Confidence 99999999999974 34679999999999999999999999999999999999999999999999999986
No 10
>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a sec
Probab=100.00 E-value=2.5e-52 Score=459.16 Aligned_cols=224 Identities=46% Similarity=0.704 Sum_probs=210.8
Q ss_pred CCcHHHHHHHHHHHHHhcC-CceEEEEEEEEEEECCeeeecCCCCCCCceeeeCCCCCeEeccceEEEecCHHHHHHHHH
Q 002546 2 IGITEYTMSDIYDYIEKHK-EREFVLKFSAMEIYNESVRDLLSADTSPLRLLDDPERGTIVEKLTEETLKDWNHLKELLS 80 (909)
Q Consensus 2 ~GIIprav~dLF~~Iek~~-erefsV~vS~lEIYNE~V~DLLs~~~~~L~I~eDp~~g~~VegLtev~V~S~eell~LL~ 80 (909)
+|||||++++||+.++..+ +..|.|++||+|||||+|+|||++...++.+++|+.++++|.|++++.|.++++++.+|.
T Consensus 112 ~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIyne~v~DLL~~~~~~l~i~ed~~~~~~v~gl~~~~v~s~~e~~~~l~ 191 (338)
T cd01370 112 PGLMVLTMKDLFDKIEERKDDKEFEVSLSYLEIYNETIRDLLSPSSGPLELREDPNQGIVVAGLTEHQPKSAEEILELLM 191 (338)
T ss_pred CchHHHHHHHHHHhhhhcccCceEEEEEEEEEEECCEEEECCCCCCCCceEEEcCCCCEEeCCcEEEEeCCHHHHHHHHH
Confidence 6999999999999998876 689999999999999999999998888999999999999999999999999999999999
Q ss_pred HHHhhccccccccCCCCCCceeEEEEEEEeecccccCCCCCcccccceeecccCcccccccccccchhhhhhhhhhhHHH
Q 002546 81 TCEAQRQIGETSLNETSSRSHQILRLTVESSACEFIGNDPSSLTATVNFVDLAGSERASQALSAGTRLKEGCHINRSLLT 160 (909)
Q Consensus 81 ~G~~~R~~~sT~lN~~SSRSH~IFtI~Veq~~~e~~g~~~s~~~SkL~fVDLAGSER~skt~s~g~rlkEg~~INkSLla 160 (909)
.|.++|++++|.+|..|||||+||+|+|.+...... .......|+|+|||||||||..+++..|.+++|+++||+||++
T Consensus 192 ~g~~~R~~~~t~~n~~SSRSH~i~~i~i~~~~~~~~-~~~~~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~~ 270 (338)
T cd01370 192 KGNRNRTQEPTEANATSSRSHAVLQITVRQKDRTAS-INQQVRIGKLSLIDLAGSERASATNNRGQRLKEGANINRSLLA 270 (338)
T ss_pred HHHhhcccccccccCccCcceEEEEEEEEEEecCCC-CCCcEEEEEEEEEECCCCccccccCCCCccccccchhhHHHHH
Confidence 999999999999999999999999999998764321 1233678999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCC--CCcccCCCchhHHHhHhhcCCCcccceEeecCCCCCChHHHHHHHHHHHHHhcc
Q 002546 161 LGTVIRKLSKGR--NGHVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAKEV 226 (909)
Q Consensus 161 Lg~VI~ALs~~k--~~hIPYRDSKLTrLLqdSLGGNsrT~mIatVSPs~~~~eETLsTLrFAsRAK~I 226 (909)
|++||.+|+.+. ..||||||||||+||+|+|||||+|+|||||||+..+++||++||+||+|||+|
T Consensus 271 L~~vi~~L~~~~~~~~~ipyR~SkLT~lL~d~Lggn~~t~~I~~vsp~~~~~~eTl~TL~fa~ra~~I 338 (338)
T cd01370 271 LGNCINALVDGKKKNKHIPYRDSKLTRLLKDSLGGNCKTVMIANISPSSSHYEETHNTLKYANRAKNI 338 (338)
T ss_pred HHHHHHHHHhccCCCCcCCCcCCHHHHHHHHhcCCCCeEEEEEEeCCchhhHHHHHHHHHHHHHhccC
Confidence 999999999775 379999999999999999999999999999999999999999999999999986
No 11
>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.
Probab=100.00 E-value=5.7e-51 Score=450.92 Aligned_cols=232 Identities=38% Similarity=0.593 Sum_probs=215.9
Q ss_pred CCcHHHHHHHHHHHHHhcCC--ceEEEEEEEEEEECCeeeecCCCCC---CCceeeeCCCCCeEeccceEEEecCHHHHH
Q 002546 2 IGITEYTMSDIYDYIEKHKE--REFVLKFSAMEIYNESVRDLLSADT---SPLRLLDDPERGTIVEKLTEETLKDWNHLK 76 (909)
Q Consensus 2 ~GIIprav~dLF~~Iek~~e--refsV~vS~lEIYNE~V~DLLs~~~---~~L~I~eDp~~g~~VegLtev~V~S~eell 76 (909)
+|||||++++||+.++...+ ..|.|+|||+|||||+|+|||++.. ..+.+++++.+|++|+|++++.|.++++++
T Consensus 113 ~Gli~r~~~~Lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~~~~~l~i~~~~~~g~~v~gl~~~~v~s~~e~~ 192 (356)
T cd01365 113 KGIIPRLCEELFQRIESKKEQNLSYEVEVSYMEIYNEKVRDLLNPKKKNKGNLKVREHPVLGPYVEDLSKVAVTSYEDIQ 192 (356)
T ss_pred CchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCeeeeCCCCCccCCcCceEEECCCCCEEeCCCEEEEeCCHHHHH
Confidence 69999999999999987654 6899999999999999999999874 589999999999999999999999999999
Q ss_pred HHHHHHHhhccccccccCCCCCCceeEEEEEEEeecccccCCCCCcccccceeecccCcccccccccccchhhhhhhhhh
Q 002546 77 ELLSTCEAQRQIGETSLNETSSRSHQILRLTVESSACEFIGNDPSSLTATVNFVDLAGSERASQALSAGTRLKEGCHINR 156 (909)
Q Consensus 77 ~LL~~G~~~R~~~sT~lN~~SSRSH~IFtI~Veq~~~e~~g~~~s~~~SkL~fVDLAGSER~skt~s~g~rlkEg~~INk 156 (909)
.+|..|.++|+.++|.+|..|||||+||+|+|.+..............++|+|||||||||....+..|.+++|+.+||+
T Consensus 193 ~~l~~g~~~R~~~~t~~n~~SSRSH~i~~l~v~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~~~~~~~~~~E~~~IN~ 272 (356)
T cd01365 193 NLLEEGNKSRTTASTNMNDTSSRSHAVFTIVLTQKKLDKETDLTTEKVSKISLVDLAGSERASSTGAEGDRLKEGSNINK 272 (356)
T ss_pred HHHHHHHhcccccCCCCCCCcCCceEEEEEEEEEEecccCCCCCceEEEEEEeeecccccccccccccchhhHHHHHHhH
Confidence 99999999999999999999999999999999987654322334467899999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhcCC-------CCCcccCCCchhHHHhHhhcCCCcccceEeecCCCCCChHHHHHHHHHHHHHhccccc
Q 002546 157 SLLTLGTVIRKLSKG-------RNGHVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAKEVTTN 229 (909)
Q Consensus 157 SLlaLg~VI~ALs~~-------k~~hIPYRDSKLTrLLqdSLGGNsrT~mIatVSPs~~~~eETLsTLrFAsRAK~Ikn~ 229 (909)
||++|++||.+|+.+ +..||||||||||+||+++|||||+|+||+||||+..+++||++||+||++|++|++.
T Consensus 273 SL~aL~~vi~~l~~~~~~~~~~~~~~ipyR~SkLT~lL~~~lgg~s~t~~I~~vsp~~~~~~eTl~tL~fa~~~~~i~~~ 352 (356)
T cd01365 273 SLTTLGKVISALADNSSAKSKKKSSFIPYRDSVLTWLLKENLGGNSKTAMIATISPADINYEETLSTLRYADRAKKIVNV 352 (356)
T ss_pred HHHHHHHHHHHHHhcccccccCCCCcCCCcCcHHHHHHHHhcCCCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccCc
Confidence 999999999999854 3579999999999999999999999999999999999999999999999999999999
Q ss_pred ceec
Q 002546 230 AQVN 233 (909)
Q Consensus 230 p~vN 233 (909)
|++|
T Consensus 353 ~~~~ 356 (356)
T cd01365 353 AVVN 356 (356)
T ss_pred cccC
Confidence 9886
No 12
>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a
Probab=100.00 E-value=1.4e-50 Score=446.61 Aligned_cols=218 Identities=33% Similarity=0.511 Sum_probs=202.2
Q ss_pred CCcHHHHHHHHHHHHHhcCCceEEEEEEEEEEECCeeeecCCCCCC------CceeeeCCCCCeEeccceEEEecCHHHH
Q 002546 2 IGITEYTMSDIYDYIEKHKEREFVLKFSAMEIYNESVRDLLSADTS------PLRLLDDPERGTIVEKLTEETLKDWNHL 75 (909)
Q Consensus 2 ~GIIprav~dLF~~Iek~~erefsV~vS~lEIYNE~V~DLLs~~~~------~L~I~eDp~~g~~VegLtev~V~S~eel 75 (909)
+|||||++++||+.+.. |.|+|||+|||||+|+|||++... ++.+++|+.++++|+|++++.|.+++++
T Consensus 113 ~Gli~r~~~~lF~~~~~-----~~v~~S~~EIyne~v~DLL~~~~~~~~~~~~l~i~ed~~~~~~i~gl~~~~v~s~~e~ 187 (345)
T cd01368 113 GGILPRSLDVIFNSIGG-----YSVFVSYVEIYNNYIYDLLEDSPSSTKKRQSLRLREDHNGNMYVAGLTEVEVSSTEEA 187 (345)
T ss_pred CchHHHHHHHHHHHHHh-----eeEEEEEEEEeCCEeEeCCCCccccccCCCceEEEECCCCCEEecCCEEEEeCCHHHH
Confidence 69999999999999976 999999999999999999987553 6999999999999999999999999999
Q ss_pred HHHHHHHHhhccccccccCCCCCCceeEEEEEEEeecccccCC----CCCcccccceeecccCcccccccccccchhhhh
Q 002546 76 KELLSTCEAQRQIGETSLNETSSRSHQILRLTVESSACEFIGN----DPSSLTATVNFVDLAGSERASQALSAGTRLKEG 151 (909)
Q Consensus 76 l~LL~~G~~~R~~~sT~lN~~SSRSH~IFtI~Veq~~~e~~g~----~~s~~~SkL~fVDLAGSER~skt~s~g~rlkEg 151 (909)
+.+|..|.++|++++|.+|..|||||+||+|+|.+......+. ......++|+|||||||||..++++.|.+++|+
T Consensus 188 ~~~l~~g~~~R~~~~t~~N~~SSRSH~i~~i~v~~~~~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~ 267 (345)
T cd01368 188 REVFKRGQKNRRVAGTKLNRESSRSHSVFTIKLVQAPGDSDGDVDQDKDQITVSQLSLVDLAGSERTSRTQNTGERLKEA 267 (345)
T ss_pred HHHHHHhhccceeccccCcCCCCCceEEEEEEEEEeccCcccccccCCCceEEEEEEEEecccccccccccccchhhhhh
Confidence 9999999999999999999999999999999999876543221 233578999999999999999999999999999
Q ss_pred hhhhhhHHHHHHHHHHhcCC-----CCCcccCCCchhHHHhHhhcCCCcccceEeecCCCCCChHHHHHHHHHHHHHh
Q 002546 152 CHINRSLLTLGTVIRKLSKG-----RNGHVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAK 224 (909)
Q Consensus 152 ~~INkSLlaLg~VI~ALs~~-----k~~hIPYRDSKLTrLLqdSLGGNsrT~mIatVSPs~~~~eETLsTLrFAsRAK 224 (909)
++||+||++|++||.+|+++ +..||||||||||+||+|+|||||+|+||+||||+..+++||++||+||.+|+
T Consensus 268 ~~IN~SL~aL~~vi~aL~~~~~~~~~~~~iPyR~SkLT~lL~~~l~g~s~t~~I~~vsp~~~~~~eTl~tL~fa~~a~ 345 (345)
T cd01368 268 GNINTSLMTLGKCIEVLRENQLSGSTNKMVPYRDSKLTHLFQNYFDGEGKARMIVNVNPCASDYDETLHVMKFSAIAQ 345 (345)
T ss_pred hhhhHHHHHHHHHHHHHHhhhcccCCCCcCCCcCCHHHHHHHHhcCCCCeEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 99999999999999999863 46799999999999999999999999999999999999999999999999985
No 13
>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil d
Probab=100.00 E-value=3.1e-50 Score=444.04 Aligned_cols=230 Identities=38% Similarity=0.597 Sum_probs=214.1
Q ss_pred CCcHHHHHHHHHHHHHhcCCceEEEEEEEEEEECCeeeecCCCC---CCCceeeeC--CCCCeEeccceEEEecCHHHHH
Q 002546 2 IGITEYTMSDIYDYIEKHKEREFVLKFSAMEIYNESVRDLLSAD---TSPLRLLDD--PERGTIVEKLTEETLKDWNHLK 76 (909)
Q Consensus 2 ~GIIprav~dLF~~Iek~~erefsV~vS~lEIYNE~V~DLLs~~---~~~L~I~eD--p~~g~~VegLtev~V~S~eell 76 (909)
+|||||++.+||+.++.. ...|.|+|||+|||||+|+|||++. ..+++++++ ..+|++|+|++++.|.+++++.
T Consensus 117 ~Glipr~~~~Lf~~~~~~-~~~~~v~~S~~EIy~e~v~DLL~~~~~~~~~l~i~e~~~~~~g~~v~gl~~~~v~s~~e~~ 195 (352)
T cd01364 117 AGIIPRALYQLFEKLESQ-NTEYSVKVSYLELYNEELFDLLSSESDLNKPLRIFDDTNNKGGVVIQGLEEITVNNANEGL 195 (352)
T ss_pred CCchHHHHHHHHHHHHhc-cceeEEEEEEEEeeCCeeeeCCCCccccCccceEEeccCcCCCEEeCCcEEEEeCCHHHHH
Confidence 699999999999999876 6789999999999999999999987 468999999 5899999999999999999999
Q ss_pred HHHHHHHhhccccccccCCCCCCceeEEEEEEEeecccccCCCCCcccccceeecccCcccccccccccchhhhhhhhhh
Q 002546 77 ELLSTCEAQRQIGETSLNETSSRSHQILRLTVESSACEFIGNDPSSLTATVNFVDLAGSERASQALSAGTRLKEGCHINR 156 (909)
Q Consensus 77 ~LL~~G~~~R~~~sT~lN~~SSRSH~IFtI~Veq~~~e~~g~~~s~~~SkL~fVDLAGSER~skt~s~g~rlkEg~~INk 156 (909)
.+|..|.++|++++|.+|..|||||+||+|+|.+...... +......|+|+||||||+|+..+.++.+.+++|++.||+
T Consensus 196 ~~l~~g~~~R~~~~t~~n~~sSRSH~i~~i~i~~~~~~~~-~~~~~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~iN~ 274 (352)
T cd01364 196 KLLEKGSAKRKTAATLMNDQSSRSHSIFSITIHIKETTIS-GEELVKIGKLNLVDLAGSENIGRSGAENKRAREAGNINQ 274 (352)
T ss_pred HHHHHHhhhcccccCcCCCCCCCCceEEEEEEEEeccCCC-CCccEEEEEEEEEECCCccccccccCcchhhHHHhhhhH
Confidence 9999999999999999999999999999999998764322 222256799999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhcCCCCCcccCCCchhHHHhHhhcCCCcccceEeecCCCCCChHHHHHHHHHHHHHhcccccceecc
Q 002546 157 SLLTLGTVIRKLSKGRNGHVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAKEVTTNAQVNI 234 (909)
Q Consensus 157 SLlaLg~VI~ALs~~k~~hIPYRDSKLTrLLqdSLGGNsrT~mIatVSPs~~~~eETLsTLrFAsRAK~Ikn~p~vN~ 234 (909)
||++|++||.+|+.+. .|||||+||||+||+++|||||+|+||+||||+..+++||++||+||++|++|+|.|.+|.
T Consensus 275 SL~~L~~vi~al~~~~-~~vpyR~S~LT~lL~~~Lgg~s~t~~I~~vsp~~~~~~eTl~TL~~a~~~~~i~n~P~~n~ 351 (352)
T cd01364 275 SLLTLGRVINALVEKS-PHIPYRESKLTRLLQDSLGGRTKTSIIATISPASINLEETLSTLEYAHRAKNIKNKPEVNQ 351 (352)
T ss_pred HHHHHHHHHHHHHcCC-CCCCCcccHHHHHHHHhcCCCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccCccccCC
Confidence 9999999999998754 6999999999999999999999999999999999999999999999999999999999985
No 14
>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain
Probab=100.00 E-value=8.1e-50 Score=438.11 Aligned_cols=224 Identities=40% Similarity=0.629 Sum_probs=210.9
Q ss_pred CCcHHHHHHHHHHHHHhcCCceEEEEEEEEEEECCeeeecCCCCC-CCceeeeCCCCCeEeccceEEEecCHHHHHHHHH
Q 002546 2 IGITEYTMSDIYDYIEKHKEREFVLKFSAMEIYNESVRDLLSADT-SPLRLLDDPERGTIVEKLTEETLKDWNHLKELLS 80 (909)
Q Consensus 2 ~GIIprav~dLF~~Iek~~erefsV~vS~lEIYNE~V~DLLs~~~-~~L~I~eDp~~g~~VegLtev~V~S~eell~LL~ 80 (909)
+|||||++++||+.++..++..|.|+|||+|||||+|+|||++.. ..+.+++++.+|++|+|++++.|.+++++..+|.
T Consensus 109 ~Glipr~~~~Lf~~~~~~~~~~~~v~~S~~Eiy~e~v~DLL~~~~~~~l~i~~~~~~~~~v~~l~~~~v~s~~~~~~~l~ 188 (333)
T cd01371 109 RGIIPNSFAHIFGHIAKAENVQFLVRVSYLEIYNEEVRDLLGKDQKKKLELKERPDRGVYVKDLSMFVVKNAEEMDKLMT 188 (333)
T ss_pred cchHHHHHHHHHHHHhhccCccEEEEEEEEEeeCCeeeeCCCCCCCCceeEEEcCCCCEEeCCCEEEEeCCHHHHHHHHH
Confidence 699999999999999988889999999999999999999999876 5899999999999999999999999999999999
Q ss_pred HHHhhccccccccCCCCCCceeEEEEEEEeecccccCCCCCcccccceeecccCcccccccccccchhhhhhhhhhhHHH
Q 002546 81 TCEAQRQIGETSLNETSSRSHQILRLTVESSACEFIGNDPSSLTATVNFVDLAGSERASQALSAGTRLKEGCHINRSLLT 160 (909)
Q Consensus 81 ~G~~~R~~~sT~lN~~SSRSH~IFtI~Veq~~~e~~g~~~s~~~SkL~fVDLAGSER~skt~s~g~rlkEg~~INkSLla 160 (909)
.|.++|+.+.|.+|..|||||+||+|+|++...... +......|+|+||||||||+..+++..|.+++|++.||+||.+
T Consensus 189 ~g~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~-~~~~~~~s~L~~VDLAGsEr~~~~~~~~~~~~E~~~iN~sL~~ 267 (333)
T cd01371 189 LGNKNRSVGATNMNEDSSRSHSIFTITIECSEKGED-GENHIRVGKLNLVDLAGSERQSKTGATGDRLKEATKINLSLSA 267 (333)
T ss_pred HHHhhCccccccccCCCCCCcEEEEEEEEEEeccCC-CCCcEEEEEEEEEECCCCCcccccCCchhhhHhHhhhhhHHHH
Confidence 999999999999999999999999999998764321 2233568999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCcccCCCchhHHHhHhhcCCCcccceEeecCCCCCChHHHHHHHHHHHHHhcc
Q 002546 161 LGTVIRKLSKGRNGHVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAKEV 226 (909)
Q Consensus 161 Lg~VI~ALs~~k~~hIPYRDSKLTrLLqdSLGGNsrT~mIatVSPs~~~~eETLsTLrFAsRAK~I 226 (909)
|++||.+|+.++..|||||+||||+||+++|||||+|+||+||+|...+++||++||+||+|||+|
T Consensus 268 L~~vi~al~~~~~~~ipyR~SkLT~lL~~~l~g~s~t~~I~~vsP~~~~~~eTl~TL~fa~r~r~I 333 (333)
T cd01371 268 LGNVISALVDGKSTHIPYRDSKLTRLLQDSLGGNSKTVMCANIGPADYNYDETLSTLRYANRAKNI 333 (333)
T ss_pred HHHHHHHHHhCCCCcCCCccCHHHHHHHHhcCCCceEEEEEEeCCccccHHHHHHHHHHHHHhhcC
Confidence 999999999887779999999999999999999999999999999999999999999999999986
No 15
>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to
Probab=100.00 E-value=1.8e-49 Score=433.04 Aligned_cols=223 Identities=55% Similarity=0.810 Sum_probs=210.2
Q ss_pred CCcHHHHHHHHHHHHHhcCCceEEEEEEEEEEECCeeeecCCCCCCCceeeeCCCCCeEeccceEEEecCHHHHHHHHHH
Q 002546 2 IGITEYTMSDIYDYIEKHKEREFVLKFSAMEIYNESVRDLLSADTSPLRLLDDPERGTIVEKLTEETLKDWNHLKELLST 81 (909)
Q Consensus 2 ~GIIprav~dLF~~Iek~~erefsV~vS~lEIYNE~V~DLLs~~~~~L~I~eDp~~g~~VegLtev~V~S~eell~LL~~ 81 (909)
+|||||++++||..+.+.++..|.|++||+|||||+|+|||++...++++++++.+|++|.|++++.|.+++++..+|..
T Consensus 98 ~Gli~r~~~~lf~~~~~~~~~~~~v~~S~~Eiy~e~v~DLL~~~~~~l~i~~~~~~~~~v~gl~~~~v~s~~e~~~~l~~ 177 (321)
T cd01374 98 PGIIPLAVRDIFQRIQDTPDREFLLRVSYLEIYNEKIKDLLSPSPQELRIREDPNKGVVVAGLTEEIVTSPEHLLQLIAR 177 (321)
T ss_pred CchHHHHHHHHHHHHhcccCceEEEEEEEEEEEcCEeEEccCCCCCCceEEECCCCCEEeCCceEEEeCCHHHHHHHHHH
Confidence 59999999999999998888999999999999999999999999889999999999999999999999999999999999
Q ss_pred HHhhccccccccCCCCCCceeEEEEEEEeecccccCCCCCcccccceeecccCcccccccccccchhhhhhhhhhhHHHH
Q 002546 82 CEAQRQIGETSLNETSSRSHQILRLTVESSACEFIGNDPSSLTATVNFVDLAGSERASQALSAGTRLKEGCHINRSLLTL 161 (909)
Q Consensus 82 G~~~R~~~sT~lN~~SSRSH~IFtI~Veq~~~e~~g~~~s~~~SkL~fVDLAGSER~skt~s~g~rlkEg~~INkSLlaL 161 (909)
|.++|+.+.|.+|..|||||+||+|+|.+...... .......|+|+||||||+|+..+.+ .+.+++|+++||+||++|
T Consensus 178 ~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~-~~~~~~~s~l~~vDLAGsE~~~~~~-~~~~~~e~~~iN~Sl~~L 255 (321)
T cd01374 178 GEKNRHVGETDFNERSSRSHTIFQLTIESRERGDS-ESGTVRVSTLNLIDLAGSERASQTG-AGERRKEGSFINKSLLTL 255 (321)
T ss_pred HHhccccccCcCCCccccccEEEEEEEEEEecCCC-CCCcEEEEEEEEEECCCCCccccCC-CCccccccchhhhHHHHH
Confidence 99999999999999999999999999998764321 1233678999999999999999888 899999999999999999
Q ss_pred HHHHHHhcCCC-CCcccCCCchhHHHhHhhcCCCcccceEeecCCCCCChHHHHHHHHHHHHHhcc
Q 002546 162 GTVIRKLSKGR-NGHVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAKEV 226 (909)
Q Consensus 162 g~VI~ALs~~k-~~hIPYRDSKLTrLLqdSLGGNsrT~mIatVSPs~~~~eETLsTLrFAsRAK~I 226 (909)
++||.+|+.++ ..|||||+||||+||+++|||||+|+|||||||...+++||++||+||++|++|
T Consensus 256 ~~vi~al~~~~~~~~vpyR~SkLT~lL~~~L~g~s~t~~i~~vsp~~~~~~eTl~TL~~a~r~~~i 321 (321)
T cd01374 256 GTVISKLSEGKNSGHIPYRDSKLTRILQPSLSGNARTAIICTISPASSHVEETLNTLKFASRAKKV 321 (321)
T ss_pred HHHHHHHHhcCCCCcCCCcCCHHHHHHHHhcCCCceEEEEEEeCCccccHHHHHHHHHHHHHHhcC
Confidence 99999999875 679999999999999999999999999999999999999999999999999986
No 16
>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80
Probab=100.00 E-value=2.2e-49 Score=435.13 Aligned_cols=221 Identities=35% Similarity=0.498 Sum_probs=208.5
Q ss_pred CCcHHHHHHHHHHHHHhcCCceEEEEEEEEEEECCeeeecCCCCC------CCceeeeCCCCCeEeccceEEEecCHHHH
Q 002546 2 IGITEYTMSDIYDYIEKHKEREFVLKFSAMEIYNESVRDLLSADT------SPLRLLDDPERGTIVEKLTEETLKDWNHL 75 (909)
Q Consensus 2 ~GIIprav~dLF~~Iek~~erefsV~vS~lEIYNE~V~DLLs~~~------~~L~I~eDp~~g~~VegLtev~V~S~eel 75 (909)
+|||||++++||++++..++..|.|++||+|||||+|+|||++.. ..+.+++++.++++|+|++++.|.+++++
T Consensus 108 ~Glipr~~~~lf~~~~~~~~~~~~v~~S~~Eiy~e~v~DLL~~~~~~~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~ 187 (334)
T cd01375 108 RGLIPRALEQVFREVAMRATKTYTVHVSYLEIYNEQLYDLLGDTPEALESLPAVTILEDSEQNIHVKGLSLHSATTEEEA 187 (334)
T ss_pred CchHHHHHHHHHHHHHhccCcceEEEEEEEEEECCEeecCCCCCccccccCCceEEEEcCCCCEEeCCcEEEEeCCHHHH
Confidence 599999999999999998889999999999999999999999884 57999999999999999999999999999
Q ss_pred HHHHHHHHhhccccccccCCCCCCceeEEEEEEEeecccccCCCCCcccccceeecccCcccccccccccchhhhhhhhh
Q 002546 76 KELLSTCEAQRQIGETSLNETSSRSHQILRLTVESSACEFIGNDPSSLTATVNFVDLAGSERASQALSAGTRLKEGCHIN 155 (909)
Q Consensus 76 l~LL~~G~~~R~~~sT~lN~~SSRSH~IFtI~Veq~~~e~~g~~~s~~~SkL~fVDLAGSER~skt~s~g~rlkEg~~IN 155 (909)
+.+|..|.++|++++|.+|..|||||+||+|+|.+...+. .......++|+||||||||+..+++..+..++|+.+||
T Consensus 188 ~~~~~~g~~~R~~~~t~~n~~sSRSH~i~~l~v~~~~~~~--~~~~~~~s~l~~VDLAGsEr~~~~~~~~~~~~e~~~iN 265 (334)
T cd01375 188 LNLLFLGETNRTIAETSMNQASSRSHCIFTIHLESRSREA--GSEVVRLSKLNLVDLAGSERVSKTGVSGQVLKEAKYIN 265 (334)
T ss_pred HHHHHHHHhhcccccCcCcCCcCcCeEEEEEEEEEEecCC--CCCceEEEEEEEEECCCCCccccccCchhhhhhhhhhh
Confidence 9999999999999999999999999999999999875432 22336789999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhcCCCCCcccCCCchhHHHhHhhcCCCcccceEeecCCCCCChHHHHHHHHHHHHHh
Q 002546 156 RSLLTLGTVIRKLSKGRNGHVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAK 224 (909)
Q Consensus 156 kSLlaLg~VI~ALs~~k~~hIPYRDSKLTrLLqdSLGGNsrT~mIatVSPs~~~~eETLsTLrFAsRAK 224 (909)
+||++|++||.+|+.+...||||||||||+||+|+|||||+|+|||||||+..+++||++||+||+|++
T Consensus 266 ~SL~~L~~vi~~l~~~~~~~ipyRdSkLT~lL~d~Lgg~~~t~~I~~vsp~~~~~~eTl~TL~fa~r~~ 334 (334)
T cd01375 266 KSLSFLEQVINALSEKARTHVPYRNSKLTHVLRDSLGGNCKTVMLATIWVEPSNLDETLSTLRFAQRVA 334 (334)
T ss_pred hhHHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHhcCCCceEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 999999999999998776799999999999999999999999999999999999999999999999985
No 17
>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain,
Probab=100.00 E-value=3.5e-49 Score=433.42 Aligned_cols=227 Identities=42% Similarity=0.626 Sum_probs=210.9
Q ss_pred CCCcHHHHHHHHHHHHHhcCC-ceEEEEEEEEEEECCeeeecCCCC---CCCceeeeCCCCCeEeccceEEEecCHHHHH
Q 002546 1 MIGITEYTMSDIYDYIEKHKE-REFVLKFSAMEIYNESVRDLLSAD---TSPLRLLDDPERGTIVEKLTEETLKDWNHLK 76 (909)
Q Consensus 1 m~GIIprav~dLF~~Iek~~e-refsV~vS~lEIYNE~V~DLLs~~---~~~L~I~eDp~~g~~VegLtev~V~S~eell 76 (909)
.+|||||++++||+.++...+ .+|.|.|||+|||||+|+|||++. ...+.+++++.++++|.|++++.|.++++++
T Consensus 103 ~~Giipr~~~~LF~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~l~i~e~~~~~~~i~gl~~~~v~s~~e~~ 182 (341)
T cd01372 103 EVGIIPRAIQHIFKKIDEKKDEPDFQLKVSFLELYNEEVRDLLSPSTSEKSPIQIREDSKGNIIIVGLTEVTVNSAQEVM 182 (341)
T ss_pred cCChHHHHHHHHHHHHHhccccceEEEEEEEEEeECCeeecCCCCcccCCCCceEEECCCCCEecCCCEEEEECCHHHHH
Confidence 379999999999999988765 799999999999999999999987 4689999999999999999999999999999
Q ss_pred HHHHHHHhhccccccccCCCCCCceeEEEEEEEeecccccC------CCCCcccccceeecccCcccccccccccchhhh
Q 002546 77 ELLSTCEAQRQIGETSLNETSSRSHQILRLTVESSACEFIG------NDPSSLTATVNFVDLAGSERASQALSAGTRLKE 150 (909)
Q Consensus 77 ~LL~~G~~~R~~~sT~lN~~SSRSH~IFtI~Veq~~~e~~g------~~~s~~~SkL~fVDLAGSER~skt~s~g~rlkE 150 (909)
.+|..|.++|+.++|.+|..|||||+||+|+|.+....... .......|+|+||||||+|+..++++.|.+++|
T Consensus 183 ~~l~~g~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~~~~~~~~~~~~~~~~~s~l~~VDLAGsE~~~~~~~~~~~~~e 262 (341)
T cd01372 183 SCLEQGSLSRTTASTAMNSQSSRSHAIFTITLEQTRKNGPIAPMSGDDKNSTLTSKFHFVDLAGSERLKKTGATGDRLKE 262 (341)
T ss_pred HHHHHHHHhcccccccCCCccCcCcEEEEEEEEEEecCCccccccccCCCceeeEEEEEEECCCCcccccccCchhHhHH
Confidence 99999999999999999999999999999999987653111 122367899999999999999999999999999
Q ss_pred hhhhhhhHHHHHHHHHHhcCCC--CCcccCCCchhHHHhHhhcCCCcccceEeecCCCCCChHHHHHHHHHHHHHhccc
Q 002546 151 GCHINRSLLTLGTVIRKLSKGR--NGHVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAKEVT 227 (909)
Q Consensus 151 g~~INkSLlaLg~VI~ALs~~k--~~hIPYRDSKLTrLLqdSLGGNsrT~mIatVSPs~~~~eETLsTLrFAsRAK~Ik 227 (909)
+..||+||++|++||.+|+.+. ..|||||+||||+||+++||||++|+||+||||+..+++||++||+||++||+|+
T Consensus 263 ~~~in~sl~aL~~vi~al~~~~~~~~~ipyR~S~LT~lL~~~Lgg~s~t~~I~~vsp~~~~~~eTl~tL~~a~~~~~ik 341 (341)
T cd01372 263 GISINSGLLALGNVISALGDESKKGSHVPYRDSKLTRLLQDSLGGNSHTLMIACVSPADSNFEETLNTLKYANRARNIK 341 (341)
T ss_pred HHHHhHHHHHHHHHHHHHHhcCCCCCCCCCcccHHHHHHHHhcCCCceEEEEEEeCCChhhHHHHHHHHHHHHHhccCC
Confidence 9999999999999999999765 3799999999999999999999999999999999999999999999999999986
No 18
>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-c
Probab=100.00 E-value=5.8e-49 Score=429.41 Aligned_cols=221 Identities=39% Similarity=0.594 Sum_probs=209.1
Q ss_pred CCcHHHHHHHHHHHHHhcC-CceEEEEEEEEEEECCeeeecCCCCCCCceeeeCCCCCeEeccceEEEecCHHHHHHHHH
Q 002546 2 IGITEYTMSDIYDYIEKHK-EREFVLKFSAMEIYNESVRDLLSADTSPLRLLDDPERGTIVEKLTEETLKDWNHLKELLS 80 (909)
Q Consensus 2 ~GIIprav~dLF~~Iek~~-erefsV~vS~lEIYNE~V~DLLs~~~~~L~I~eDp~~g~~VegLtev~V~S~eell~LL~ 80 (909)
.|||||++++||+.++... ..+|.|++||+|||||+|+|||++....+.+++++.+|++|+|++++.|.|++++..+|.
T Consensus 104 ~Giipr~~~~Lf~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~~l~i~~~~~~~~~v~gl~~~~v~s~~e~~~~i~ 183 (325)
T cd01369 104 KGIIPRIVHDIFEHISSMDENLEFHVKVSYLEIYMEKIRDLLDVSKDNLQVHEDKNRGVYVKGLTERFVSSPEEVLEVIN 183 (325)
T ss_pred CChHHHHHHHHHHHHhhccCCceEEEEEEEEEEECCChhhcccCccCCceEEEcCCCCEEEcCCEEEEcCCHHHHHHHHH
Confidence 6999999999999998765 458999999999999999999999888999999999999999999999999999999999
Q ss_pred HHHhhccccccccCCCCCCceeEEEEEEEeecccccCCCCCcccccceeecccCcccccccccccchhhhhhhhhhhHHH
Q 002546 81 TCEAQRQIGETSLNETSSRSHQILRLTVESSACEFIGNDPSSLTATVNFVDLAGSERASQALSAGTRLKEGCHINRSLLT 160 (909)
Q Consensus 81 ~G~~~R~~~sT~lN~~SSRSH~IFtI~Veq~~~e~~g~~~s~~~SkL~fVDLAGSER~skt~s~g~rlkEg~~INkSLla 160 (909)
.|.++|+.++|.+|..|||||+||+|+|.+.... ......++|+||||||+|+..+.++.|.+++|+..||+||.+
T Consensus 184 ~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~----~~~~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~in~sl~~ 259 (325)
T cd01369 184 EGKSNRAVASTNMNEESSRSHSIFLITLKQENVE----TGSKKRGKLFLVDLAGSEKVSKTGAEGQTLEEAKKINKSLSA 259 (325)
T ss_pred HHHhhcccccCcCCCccccccEEEEEEEEEEecC----CCCEEEEEEEEEECCCCCcccccCCcchhHHHHHHHhHHHHH
Confidence 9999999999999999999999999999986532 233578999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCcccCCCchhHHHhHhhcCCCcccceEeecCCCCCChHHHHHHHHHHHHHhcc
Q 002546 161 LGTVIRKLSKGRNGHVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAKEV 226 (909)
Q Consensus 161 Lg~VI~ALs~~k~~hIPYRDSKLTrLLqdSLGGNsrT~mIatVSPs~~~~eETLsTLrFAsRAK~I 226 (909)
|++||.+|+.++..||||||||||+||+++|||||+|+||+||||+..+++||++||+||+|||+|
T Consensus 260 L~~vi~aL~~~~~~~vpyR~S~LT~lL~~~L~g~s~t~~I~~vsp~~~~~~eTl~TL~~a~r~~~i 325 (325)
T cd01369 260 LGNVINALTDGKSTHIPYRDSKLTRILQDSLGGNSRTTLIICCSPSSYNESETLSTLRFGARAKTI 325 (325)
T ss_pred HHHHHHHHHcCCCCcCCCccCHHHHHHHHhcCCCCeEEEEEEeCCccccHHHHHHHHHHHHHhhcC
Confidence 999999999887679999999999999999999999999999999999999999999999999986
No 19
>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through
Probab=100.00 E-value=9.5e-49 Score=427.40 Aligned_cols=215 Identities=37% Similarity=0.556 Sum_probs=203.8
Q ss_pred CCcHHHHHHHHHHHHHhcCCceEEEEEEEEEEECCeeeecCCCCCCCceeeeCCCCCeEeccceEEEecCHHHHHHHHHH
Q 002546 2 IGITEYTMSDIYDYIEKHKEREFVLKFSAMEIYNESVRDLLSADTSPLRLLDDPERGTIVEKLTEETLKDWNHLKELLST 81 (909)
Q Consensus 2 ~GIIprav~dLF~~Iek~~erefsV~vS~lEIYNE~V~DLLs~~~~~L~I~eDp~~g~~VegLtev~V~S~eell~LL~~ 81 (909)
+||||+++++||+.+++.. ..|.|++||+|||||.|+|||++....+.+++++.++++|.|++++.|.+++++..+|..
T Consensus 105 ~Glipr~~~~Lf~~~~~~~-~~~~v~~S~~EIy~e~v~DLL~~~~~~l~i~~~~~~~~~v~gl~~~~v~s~~e~~~~l~~ 183 (319)
T cd01376 105 PGLIPRTLSDLLRMGRKQA-WTGAFSMSYYEIYNEKVYDLLEPAKKELPIREDKDGNILIVGLTSKPIKSMAEFEEAYIP 183 (319)
T ss_pred cchHHHHHHHHHHHHhhcc-ccceEEEEEEEEECCEeeEccCCCCCCceEEEcCCCCEEeeCCEEEEeCCHHHHHHHHHH
Confidence 6999999999999887654 689999999999999999999998889999999999999999999999999999999999
Q ss_pred HHhhccccccccCCCCCCceeEEEEEEEeecccccCCCCCcccccceeecccCcccccccccccchhhhhhhhhhhHHHH
Q 002546 82 CEAQRQIGETSLNETSSRSHQILRLTVESSACEFIGNDPSSLTATVNFVDLAGSERASQALSAGTRLKEGCHINRSLLTL 161 (909)
Q Consensus 82 G~~~R~~~sT~lN~~SSRSH~IFtI~Veq~~~e~~g~~~s~~~SkL~fVDLAGSER~skt~s~g~rlkEg~~INkSLlaL 161 (909)
|.++|..++|.+|..|||||+||+|+|.+.... ....|+|+||||||||+..+++..|.+++|+.+||+||++|
T Consensus 184 ~~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~------~~~~s~l~~VDLAGsE~~~~~~~~g~~~~e~~~iN~Sl~~L 257 (319)
T cd01376 184 ASKNRTVAATKLNDNSSRSHAVLRIKVTQPASN------IQLEGKLNLIDLAGSEDNRRTGNEGIRLKESAAINSSLFVL 257 (319)
T ss_pred HHhhhccccCcCCCccCCCeEEEEEEEEEECCC------ceEEEEEEEEECCCCCcccccCCccchhhhhhhhhhhHHHH
Confidence 999999999999999999999999999887532 25789999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCcccCCCchhHHHhHhhcCCCcccceEeecCCCCCChHHHHHHHHHHHHHh
Q 002546 162 GTVIRKLSKGRNGHVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAK 224 (909)
Q Consensus 162 g~VI~ALs~~k~~hIPYRDSKLTrLLqdSLGGNsrT~mIatVSPs~~~~eETLsTLrFAsRAK 224 (909)
++||.+|+.+. .||||||||||+||+|+|||||+|+|||||||...+++||++||+||+|||
T Consensus 258 ~~vi~aL~~~~-~~ipyr~S~LT~lL~~~L~g~s~t~~i~~vsp~~~~~~eTl~TL~fa~r~~ 319 (319)
T cd01376 258 SKVVDALNKGL-PRIPYRESKLTRLLQDSLGGGSRCIMVANIAPERSFYQDTLSTLNFASRSK 319 (319)
T ss_pred HHHHHHHhcCC-CcCCCccCHHHHHHHHhcCCCccEEEEEEeCCchhhHHHHHHHHHHHHhhC
Confidence 99999998764 699999999999999999999999999999999999999999999999986
No 20
>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and lo
Probab=100.00 E-value=1e-48 Score=427.85 Aligned_cols=213 Identities=36% Similarity=0.556 Sum_probs=200.4
Q ss_pred CCcHHHHHHHHHHHHHhcCCceEEEEEEEEEEECCeeeecCCCCCCCceeeeCCCCCeEeccceEEEecCHHHHHHHHHH
Q 002546 2 IGITEYTMSDIYDYIEKHKEREFVLKFSAMEIYNESVRDLLSADTSPLRLLDDPERGTIVEKLTEETLKDWNHLKELLST 81 (909)
Q Consensus 2 ~GIIprav~dLF~~Iek~~erefsV~vS~lEIYNE~V~DLLs~~~~~L~I~eDp~~g~~VegLtev~V~S~eell~LL~~ 81 (909)
+|||||++++||+.++... ..|.|++||+|||||+|+|||++ ..++.+++++.++++|+|++++.|.+++|++.+|..
T Consensus 109 ~Glipr~~~~lf~~~~~~~-~~~~v~~S~~EIy~e~v~DLL~~-~~~l~i~~~~~~~~~v~~l~~~~v~s~~e~~~~l~~ 186 (322)
T cd01367 109 EGLYALAARDIFRLLAQPN-DDLGVTVSFFEIYGGKLFDLLND-RKRLSVLEDGKGNVQIVGLTEKPVTSVDELLELIES 186 (322)
T ss_pred CccHHHHHHHHHHHHhccc-cccEEEEEEEeeecCchhhhccC-ccceeEEEcCCCCEEeCCCEEEEeCCHHHHHHHHHH
Confidence 5999999999999998766 78999999999999999999987 568999999999999999999999999999999999
Q ss_pred HHhhccccccccCCCCCCceeEEEEEEEeecccccCCCCCcccccceeecccCcccccccc-cccchhhhhhhhhhhHHH
Q 002546 82 CEAQRQIGETSLNETSSRSHQILRLTVESSACEFIGNDPSSLTATVNFVDLAGSERASQAL-SAGTRLKEGCHINRSLLT 160 (909)
Q Consensus 82 G~~~R~~~sT~lN~~SSRSH~IFtI~Veq~~~e~~g~~~s~~~SkL~fVDLAGSER~skt~-s~g~rlkEg~~INkSLla 160 (909)
|.++|+++.|.+|..|||||+||+|+|.+... ....++|+||||||||+..... ..+.+++|+.+||+||++
T Consensus 187 g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~-------~~~~s~l~~vDLAGsE~~~~~~~~~~~~~~e~~~IN~SL~~ 259 (322)
T cd01367 187 GNSLRTTGSTGANDQSSRSHAILQIILKNKKL-------NKLLGKLSFIDLAGSERGADTSEHDRQTRKEGAEINKSLLA 259 (322)
T ss_pred HhcccccccCcCCCCcccceEEEEEEEEEecC-------CeeEEEEEEeecCCccccccccccchhhHHhHhHHhHHHHH
Confidence 99999999999999999999999999998653 3568999999999999998765 467889999999999999
Q ss_pred HHHHHHHhcCCCCCcccCCCchhHHHhHhhcCCCcccceEeecCCCCCChHHHHHHHHHHHHHh
Q 002546 161 LGTVIRKLSKGRNGHVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAK 224 (909)
Q Consensus 161 Lg~VI~ALs~~k~~hIPYRDSKLTrLLqdSLGGNsrT~mIatVSPs~~~~eETLsTLrFAsRAK 224 (909)
|++||.+|+.++ .||||||||||+||+++|||||+|+|||||||+..+++||++||+||+|+|
T Consensus 260 L~~vi~al~~~~-~~iPyRdSkLT~lL~~~L~g~~~t~~I~~vsp~~~~~~eTl~tL~fa~r~k 322 (322)
T cd01367 260 LKECIRALASNK-AHVPFRGSKLTQVLRDSFIGNSKTVMIATISPSASSCEHTLNTLRYADRVK 322 (322)
T ss_pred HHHHHHHHhcCC-CcCCCccCHHHHHHHHhhCCCCeEEEEEEeCCchhhHHHHHHHHHHHHhhC
Confidence 999999999765 699999999999999999999999999999999999999999999999986
No 21
>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for mi
Probab=100.00 E-value=1e-47 Score=419.99 Aligned_cols=223 Identities=36% Similarity=0.558 Sum_probs=210.4
Q ss_pred CCcHHHHHHHHHHHHHhcC--CceEEEEEEEEEEECCeeeecCCCC---CCCceeeeCCCCCeEeccceEEEecCHHHHH
Q 002546 2 IGITEYTMSDIYDYIEKHK--EREFVLKFSAMEIYNESVRDLLSAD---TSPLRLLDDPERGTIVEKLTEETLKDWNHLK 76 (909)
Q Consensus 2 ~GIIprav~dLF~~Iek~~--erefsV~vS~lEIYNE~V~DLLs~~---~~~L~I~eDp~~g~~VegLtev~V~S~eell 76 (909)
+||||+++++||+.++... +..|.|++||+|||||+|+|||++. ..++.+++++.++++|+|++++.|.+++++.
T Consensus 102 ~Gli~r~~~~lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~~~~~l~i~~~~~~~~~i~~l~~~~v~s~~e~~ 181 (329)
T cd01366 102 PGIIPRALEQLFNTAEELKEKGWSYTITASMLEIYNETIRDLLATKPAPKKKLEIKHDSKGETYVTNLTEVPVSSPEEVT 181 (329)
T ss_pred CCcHHHHHHHHHHHHHhhhccCceEEEEEEEEEEECCEeEECCCCCcCCCCceEEEECCCCCEEecCCEEEEeCCHHHHH
Confidence 6999999999999998765 4799999999999999999999987 5789999999999999999999999999999
Q ss_pred HHHHHHHhhccccccccCCCCCCceeEEEEEEEeecccccCCCCCcccccceeecccCcccccccccccchhhhhhhhhh
Q 002546 77 ELLSTCEAQRQIGETSLNETSSRSHQILRLTVESSACEFIGNDPSSLTATVNFVDLAGSERASQALSAGTRLKEGCHINR 156 (909)
Q Consensus 77 ~LL~~G~~~R~~~sT~lN~~SSRSH~IFtI~Veq~~~e~~g~~~s~~~SkL~fVDLAGSER~skt~s~g~rlkEg~~INk 156 (909)
.+|..|.++|..+.|.+|..|||||+||+|+|.+.... ......|+|+||||||+|+..+.++.+.+++|+..||+
T Consensus 182 ~~l~~~~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~----~~~~~~s~l~~VDLaGsE~~~~~~~~~~~~~e~~~in~ 257 (329)
T cd01366 182 RLLNLGSKNRSVASTNMNEHSSRSHAVFQLKIRGTNLQ----TGEQTRGKLNLVDLAGSERLKKSGATGDRLKEAQAINK 257 (329)
T ss_pred HHHHHHHhhcccccccccCCCCCccEEEEEEEEEEcCC----CCcEEEEEEEEEECCCCcccccccccchhhHhHhhhhh
Confidence 99999999999999999999999999999999987642 33367899999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhcCCCCCcccCCCchhHHHhHhhcCCCcccceEeecCCCCCChHHHHHHHHHHHHHhccccc
Q 002546 157 SLLTLGTVIRKLSKGRNGHVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAKEVTTN 229 (909)
Q Consensus 157 SLlaLg~VI~ALs~~k~~hIPYRDSKLTrLLqdSLGGNsrT~mIatVSPs~~~~eETLsTLrFAsRAK~Ikn~ 229 (909)
||++|++||.+|+.+ ..|||||+||||+||+++||||++|+|||||||...+++||++||+||++|++|++.
T Consensus 258 Sl~~L~~vl~~l~~~-~~~ipyr~S~LT~lL~~~l~g~~~t~~i~~vsp~~~~~~etl~tL~~a~~~~~i~~~ 329 (329)
T cd01366 258 SLSALGDVISALRSK-DSHVPYRNSKLTYLLQDSLGGNSKTLMFVNISPLESNLSETLCSLRFASRVRSVELG 329 (329)
T ss_pred HHHHHHHHHHHHhcC-CCcCCCcccHhHHHHHHhcCCCceEEEEEEeCCchhhHHHHHHHHHHHHHhhcccCC
Confidence 999999999999876 569999999999999999999999999999999999999999999999999999863
No 22
>PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. The kinesin motor domain is located in the N-terminal part of most of the above proteins, with the exception of KAR3, klpA, and ncd where it is located in the C-terminal section. The kinesin motor domain contains about 330 amino acids. An ATP-binding motif of type A is found near position 80 to 90, the C-terminal half of the domain is involved in microtubule-binding.; GO: 0003777 microtubule motor activity, 0005524 ATP binding, 0007018 microtubule-based movement; PDB: 3NWN_A 2Y5W_A 2Y65_C 3BFN_A 2WBE_C 2ZFL_A 2ZFI_A 1I6I_A 2ZFM_A 1IA0_K ....
Probab=100.00 E-value=1.2e-47 Score=419.04 Aligned_cols=225 Identities=42% Similarity=0.658 Sum_probs=206.2
Q ss_pred CCcHHHHHHHHHHHHHhcCC---ceEEEEEEEEEEECCeeeecCCCCC----CCceeeeCCCCC-eEeccceEEEecCHH
Q 002546 2 IGITEYTMSDIYDYIEKHKE---REFVLKFSAMEIYNESVRDLLSADT----SPLRLLDDPERG-TIVEKLTEETLKDWN 73 (909)
Q Consensus 2 ~GIIprav~dLF~~Iek~~e---refsV~vS~lEIYNE~V~DLLs~~~----~~L~I~eDp~~g-~~VegLtev~V~S~e 73 (909)
+||||+++++||..++...+ ..|.|+|||+|||||.|+|||++.. .++.+++++..| ++|+|++++.|.+++
T Consensus 101 ~Gli~~~~~~lf~~~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~~l~i~~~~~~g~~~i~~l~~~~v~s~~ 180 (335)
T PF00225_consen 101 PGLIPRALRDLFSQIEERKEKSGYEFSVSVSYLEIYNEKVYDLLSPNNSKSRKPLKIREDSNKGSVYIKGLTEVEVKSAE 180 (335)
T ss_dssp BSHHHHHHHHHHHHHHHHTTTSTEEEEEEEEEEEEETTEEEETTSTTSSSTTSEBEEEEETTTEEEEETTSEEEEESSHH
T ss_pred cchhhhHHHHHhhhhccccccccccccccccchhhhhhhhhhhcCccccccccccceeeccccccceeeccccccccccc
Confidence 69999999999999998775 4999999999999999999999883 579999999977 999999999999999
Q ss_pred HHHHHHHHHHhhccccccccCCCCCCceeEEEEEEEeecccccCCCCCcccccceeecccCcccccccccc-cchhhhhh
Q 002546 74 HLKELLSTCEAQRQIGETSLNETSSRSHQILRLTVESSACEFIGNDPSSLTATVNFVDLAGSERASQALSA-GTRLKEGC 152 (909)
Q Consensus 74 ell~LL~~G~~~R~~~sT~lN~~SSRSH~IFtI~Veq~~~e~~g~~~s~~~SkL~fVDLAGSER~skt~s~-g~rlkEg~ 152 (909)
++..+|..|.++|+...|.+|..|||||+||+|+|.+..............++|+||||||+|+..+..+. +.+++|+.
T Consensus 181 ~~~~~l~~~~~~R~~~~t~~n~~sSRSH~i~~i~v~~~~~~~~~~~~~~~~s~l~~vDLaGsE~~~~~~~~~~~~~~e~~ 260 (335)
T PF00225_consen 181 EALQLLKKGQKNRRTASTKMNARSSRSHAIFTIHVEQKDRDPSDDEESVKHSRLTFVDLAGSERLKKSGASDGQRLKESS 260 (335)
T ss_dssp HHHHHHHHHHHHHTCTSSSCTHHGGGSEEEEEEEEEEEETTTTTEEEEEEEEEEEEEEEEESTGGCGCSSSSHHHHHHHH
T ss_pred cccccccchhhccccccccccccccccccccccccccccccccccccceeecceeeeecccccccccccccccccccccc
Confidence 99999999999999999999999999999999999998754322111257899999999999999988764 78899999
Q ss_pred hhhhhHHHHHHHHHHhcCC-CCCcccCCCchhHHHhHhhcCCCcccceEeecCCCCCChHHHHHHHHHHHHHhcc
Q 002546 153 HINRSLLTLGTVIRKLSKG-RNGHVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAKEV 226 (909)
Q Consensus 153 ~INkSLlaLg~VI~ALs~~-k~~hIPYRDSKLTrLLqdSLGGNsrT~mIatVSPs~~~~eETLsTLrFAsRAK~I 226 (909)
.||+||.+|++||.+|+.+ ...|||||+||||+||+|+|||||+|+||+||+|...+++||++||+||++||+|
T Consensus 261 ~in~Sl~~L~~vi~~L~~~~~~~~vpyr~SkLT~lL~d~l~g~s~t~~I~~vsp~~~~~~eTl~tL~fa~~~~~I 335 (335)
T PF00225_consen 261 NINKSLSALGNVIRALAQGSKQSHVPYRDSKLTRLLKDSLGGNSKTILIVCVSPSSEDYEETLSTLRFASRAREI 335 (335)
T ss_dssp HHHHHHHHHHHHHHHHHCTTSTSSSCGGGSHHHHHTGGGTSSSSEEEEEEEE-SBGGGHHHHHHHHHHHHHHTTE
T ss_pred eecchhhhhhhhHhhhhccccchhhhhhcccccceecccccccccceeEEEcCCccccHHHHHHHHHHHHHHcCC
Confidence 9999999999999999987 5679999999999999999999999999999999999999999999999999987
No 23
>smart00129 KISc Kinesin motor, catalytic domain. ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.
Probab=100.00 E-value=9.1e-47 Score=412.83 Aligned_cols=230 Identities=43% Similarity=0.660 Sum_probs=216.2
Q ss_pred CCcHHHHHHHHHHHHHhcC-CceEEEEEEEEEEECCeeeecCCCCCCCceeeeCCCCCeEeccceEEEecCHHHHHHHHH
Q 002546 2 IGITEYTMSDIYDYIEKHK-EREFVLKFSAMEIYNESVRDLLSADTSPLRLLDDPERGTIVEKLTEETLKDWNHLKELLS 80 (909)
Q Consensus 2 ~GIIprav~dLF~~Iek~~-erefsV~vS~lEIYNE~V~DLLs~~~~~L~I~eDp~~g~~VegLtev~V~S~eell~LL~ 80 (909)
+||||+++++||+.+.+.. +..|.|+|||+|||+|.|+|||++...++.+++++.++++++|++++.|.+++++..+|.
T Consensus 104 ~Gli~~~~~~Lf~~~~~~~~~~~~~v~~S~~ei~~e~v~DLL~~~~~~l~i~~~~~~~~~i~~l~~~~v~s~~e~~~~l~ 183 (335)
T smart00129 104 PGIIPRALKDLFEKIDKLEEGWQFQVKVSYLEIYNEKIRDLLNPSPKKLEIREDKKGGVYVKGLTEISVSSFEEVYNLLE 183 (335)
T ss_pred CCHHHHHHHHHHHHhhhcccCceEEEEEEEEEEECCEEEECcCCCCCCcEEEECCCCCEEecCCEEEEeCCHHHHHHHHH
Confidence 5999999999999998765 679999999999999999999999989999999999999999999999999999999999
Q ss_pred HHHhhccccccccCCCCCCceeEEEEEEEeecccccCCCCCcccccceeecccCcccccccccccchhhhhhhhhhhHHH
Q 002546 81 TCEAQRQIGETSLNETSSRSHQILRLTVESSACEFIGNDPSSLTATVNFVDLAGSERASQALSAGTRLKEGCHINRSLLT 160 (909)
Q Consensus 81 ~G~~~R~~~sT~lN~~SSRSH~IFtI~Veq~~~e~~g~~~s~~~SkL~fVDLAGSER~skt~s~g~rlkEg~~INkSLla 160 (909)
.|.++|++++|.+|..|||||+||+|+|.+.... ........++|+||||||+|+....++.+.+++|+..||+||.+
T Consensus 184 ~~~~~R~~~~t~~n~~ssRsH~i~~l~v~~~~~~--~~~~~~~~s~l~~VDLaGse~~~~~~~~~~~~~e~~~in~sl~~ 261 (335)
T smart00129 184 KGNKNRTVAATKMNEESSRSHAVFTITVESKIKN--SSSGSGKASKLNLVDLAGSERASKTGAEGDRLKEAGNINKSLSA 261 (335)
T ss_pred HHHhccccccCCCCCCCCcceEEEEEEEEEEecC--CCCCCEEEEEEEEEECCCCCccccccChhHHHHhhchhhhHHHH
Confidence 9999999999999999999999999999976432 12334688999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCC-CCCcccCCCchhHHHhHhhcCCCcccceEeecCCCCCChHHHHHHHHHHHHHhcccccceec
Q 002546 161 LGTVIRKLSKG-RNGHVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAKEVTTNAQVN 233 (909)
Q Consensus 161 Lg~VI~ALs~~-k~~hIPYRDSKLTrLLqdSLGGNsrT~mIatVSPs~~~~eETLsTLrFAsRAK~Ikn~p~vN 233 (909)
|++||.+|+.+ +..|||||+|+||+||+++|||+++|+||+||||...+++||++||+||+++++|+++|++|
T Consensus 262 L~~~l~~l~~~~~~~~ip~r~S~LT~lL~~~L~g~~~~~~i~~vsp~~~~~~eTl~tL~~a~~~~~i~~~p~~~ 335 (335)
T smart00129 262 LGNVINALADGQKSRHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSLSNLEETLSTLRFASRAKEIKNKAIVN 335 (335)
T ss_pred HHHHHHHHHhcCCCCCCCCcCcHhHHHHHHHcCCCCeEEEEEEcCCCccchHHHHHHHHHHHHHhhcccCCCcC
Confidence 99999999975 56799999999999999999999999999999999999999999999999999999999875
No 24
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=9.6e-49 Score=459.16 Aligned_cols=254 Identities=37% Similarity=0.546 Sum_probs=233.2
Q ss_pred CCcHHHHHHHHHHHHHhcCCceEEEEEEEEEEECCeeeecCCCCC--CCceeeeCCCCCeEeccceEEEecCHHHHHHHH
Q 002546 2 IGITEYTMSDIYDYIEKHKEREFVLKFSAMEIYNESVRDLLSADT--SPLRLLDDPERGTIVEKLTEETLKDWNHLKELL 79 (909)
Q Consensus 2 ~GIIprav~dLF~~Iek~~erefsV~vS~lEIYNE~V~DLLs~~~--~~L~I~eDp~~g~~VegLtev~V~S~eell~LL 79 (909)
.||||+++.+||..|.+.....|.|.|||+|||++.|+|||.|.. .++++++ +.+++.+.|+++++|.+..++...|
T Consensus 94 ~Gvipr~v~~~f~~i~~~~~~~f~i~vs~vely~e~v~dl~~~~~~~~~i~~~e-~~g~it~~glte~tv~~~~q~~~~L 172 (913)
T KOG0244|consen 94 VGVIPRAVSTLFTRIGKTESFVFRITVSFVELYNEEVLDLLKPSRLKANIKLRE-PKGEITIRGLTEKTVRMKLQLLSRL 172 (913)
T ss_pred CCcCcchHHHHHHHHHhhhccceeeeeeeeeccchhhhhhcChhhhhhceeccc-cCCceEEEeehHHHHHHHHHHHHHH
Confidence 499999999999999998888999999999999999999999554 3677777 7788999999999999999999999
Q ss_pred HHHHhhccccccccCCCCCCceeEEEEEEEeecccccCCCCCcccccceeecccCcccccccccccchhhhhhhhhhhHH
Q 002546 80 STCEAQRQIGETSLNETSSRSHQILRLTVESSACEFIGNDPSSLTATVNFVDLAGSERASQALSAGTRLKEGCHINRSLL 159 (909)
Q Consensus 80 ~~G~~~R~~~sT~lN~~SSRSH~IFtI~Veq~~~e~~g~~~s~~~SkL~fVDLAGSER~skt~s~g~rlkEg~~INkSLl 159 (909)
..|...|++++|.||..|||||+||+|++++.... ......+++|+|||||||||.+++++.|.+++||.+||.+|+
T Consensus 173 ~~g~~~RtvasTnMN~qssRshAifti~lkq~kk~---~~~s~~~sKlhlVDLAGSER~kkT~a~gdrlKEgInIN~gLL 249 (913)
T KOG0244|consen 173 EKGSLERTVASTNMNAQSSRSHAIFTITLKQRKKL---SKRSSFCSKLHLVDLAGSERVKKTKAEGDRLKEGININGGLL 249 (913)
T ss_pred HhchHHHHHHHHhcchhhhhhhHHHHHHHHHHHHh---hccchhhhhhheeeccccccccccccchhhhhhccCcchHHH
Confidence 99999999999999999999999999999885432 223367899999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCC-CCCcccCCCchhHHHhHhhcCCCcccceEeecCCCCCChHHHHHHHHHHHHHhcccccceeccccCH
Q 002546 160 TLGTVIRKLSKG-RNGHVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAKEVTTNAQVNIVMSD 238 (909)
Q Consensus 160 aLg~VI~ALs~~-k~~hIPYRDSKLTrLLqdSLGGNsrT~mIatVSPs~~~~eETLsTLrFAsRAK~Ikn~p~vN~~~s~ 238 (909)
+||+||.||... +.+||||||||||||||++||||+.|+||+||||+..+.+||++||+||.||++|+|.|++|. ...
T Consensus 250 ~LgnVIsaLg~~kk~~~vpyRdSkltrlLQdslgGns~tlmiaCiSpadsn~~EtlnTl~ya~Rak~iknk~vvN~-d~~ 328 (913)
T KOG0244|consen 250 ALGNVISALGEAKKGGEVPYRDSKLTRLLQDSLGGNSDTLMIACISPADSNAQETLNTLRYADRAKQIKNKPVVNQ-DPK 328 (913)
T ss_pred HHHHHHHHHHhhhcCCcccchHHHHHHHHHHHhcCCcceeeeeecChhhhhhhhHHHHHHHhhHHHHhcccccccc-cHH
Confidence 999999999854 457999999999999999999999999999999999999999999999999999999999997 444
Q ss_pred HHHHHHHHHHHHHHHHHHhcCC
Q 002546 239 KALVKHLQRELSRLENELRGSG 260 (909)
Q Consensus 239 k~lik~Lq~Ei~~Le~eLr~~~ 260 (909)
...+..|+.+++.|+.+|-...
T Consensus 329 ~~~~~~lK~ql~~l~~ell~~~ 350 (913)
T KOG0244|consen 329 SFEMLKLKAQLEPLQVELLSKA 350 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHhhc
Confidence 5678899999999999986664
No 25
>cd00106 KISc Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coil
Probab=100.00 E-value=4.2e-45 Score=398.05 Aligned_cols=221 Identities=43% Similarity=0.638 Sum_probs=207.5
Q ss_pred CCcHHHHHHHHHHHHHhcC--CceEEEEEEEEEEECCeeeecCCCC--CCCceeeeCCCCCeEeccceEEEecCHHHHHH
Q 002546 2 IGITEYTMSDIYDYIEKHK--EREFVLKFSAMEIYNESVRDLLSAD--TSPLRLLDDPERGTIVEKLTEETLKDWNHLKE 77 (909)
Q Consensus 2 ~GIIprav~dLF~~Iek~~--erefsV~vS~lEIYNE~V~DLLs~~--~~~L~I~eDp~~g~~VegLtev~V~S~eell~ 77 (909)
+||||+++++||+.++... ...|.|++||+|||+|+|+|||++. ..++.+++++.++++|.|++++.|.|+++++.
T Consensus 103 ~Gli~~~~~~Lf~~~~~~~~~~~~~~v~~S~~Ei~~e~v~DLL~~~~~~~~l~i~~~~~~~~~v~~l~~~~v~s~~e~~~ 182 (328)
T cd00106 103 PGIIPRALEDLFNLIDERKEKNKSFSVSVSYLEIYNEKVYDLLSPEPPSKPLSLREDPKGGVYVKGLTEVEVGSAEDALS 182 (328)
T ss_pred CchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCEeEECCCCCCCCCCcEEEEcCCCCEEEeCCEEEEeCCHHHHHH
Confidence 6899999999999998876 5789999999999999999999998 88999999999999999999999999999999
Q ss_pred HHHHHHhhccccccccCCCCCCceeEEEEEEEeecccccCCCCCcccccceeecccCcccccccccccchhhhhhhhhhh
Q 002546 78 LLSTCEAQRQIGETSLNETSSRSHQILRLTVESSACEFIGNDPSSLTATVNFVDLAGSERASQALSAGTRLKEGCHINRS 157 (909)
Q Consensus 78 LL~~G~~~R~~~sT~lN~~SSRSH~IFtI~Veq~~~e~~g~~~s~~~SkL~fVDLAGSER~skt~s~g~rlkEg~~INkS 157 (909)
+|..|.++|+.+.|.+|..|||||+||+|+|.+...... ......++|+||||||+|+..+.+..+.+++|++.||+|
T Consensus 183 ~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~--~~~~~~s~l~~VDLaGse~~~~~~~~~~~~~e~~~in~s 260 (328)
T cd00106 183 LLQKGLKNRTTASTAMNERSSRSHAIFTIHVEQRNTTND--GRSIKSSKLNLVDLAGSERAKKTGAEGDRLKEAKNINKS 260 (328)
T ss_pred HHHHHHhhcCcccCcCCCCcCcCcEEEEEEEEEEecCCC--CccEEEEEEEEEECCCCCcccccCCchhhhHhHHhhhhh
Confidence 999999999999999999999999999999998865321 112578999999999999999988999999999999999
Q ss_pred HHHHHHHHHHhcCCC-CCcccCCCchhHHHhHhhcCCCcccceEeecCCCCCChHHHHHHHHHHHHHh
Q 002546 158 LLTLGTVIRKLSKGR-NGHVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAK 224 (909)
Q Consensus 158 LlaLg~VI~ALs~~k-~~hIPYRDSKLTrLLqdSLGGNsrT~mIatVSPs~~~~eETLsTLrFAsRAK 224 (909)
|.+|++||.+|+.+. ..|||||+||||+||+++|||+++|+|||||+|...+++||++||+||+|||
T Consensus 261 l~~L~~vl~~l~~~~~~~~ip~r~SkLT~lL~~~l~g~~~t~~I~~vsp~~~~~~eTl~tL~~a~r~~ 328 (328)
T cd00106 261 LSALGNVISALSSGQKKKHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSSENYDETLSTLRFASRAK 328 (328)
T ss_pred HHHHHHHHHHHHhcCCCCcCCCcCcHHHHHHHHhcCCCCeEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 999999999999865 5799999999999999999999999999999999999999999999999986
No 26
>KOG0246 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=7.8e-44 Score=399.23 Aligned_cols=222 Identities=34% Similarity=0.528 Sum_probs=201.9
Q ss_pred CCCcHHHHHHHHHHHHHhcC--CceEEEEEEEEEEECCeeeecCCCCCCCceeeeCCCCCeEeccceEEEecCHHHHHHH
Q 002546 1 MIGITEYTMSDIYDYIEKHK--EREFVLKFSAMEIYNESVRDLLSADTSPLRLLDDPERGTIVEKLTEETLKDWNHLKEL 78 (909)
Q Consensus 1 m~GIIprav~dLF~~Iek~~--erefsV~vS~lEIYNE~V~DLLs~~~~~L~I~eDp~~g~~VegLtev~V~S~eell~L 78 (909)
+-||.-.+.+|+|..+..-. ...+.|.+||+|||+.+|||||+. +..|++++|..+.+.|-||+|..|.+.+++++|
T Consensus 321 s~giya~aa~Dvf~~L~~p~Y~~~~l~v~~tFFEIYgGKvfDLL~~-k~KLrvLEDg~QQVqVVGLqE~~v~~~eeVl~l 399 (676)
T KOG0246|consen 321 SKGIYALAARDVFRLLRQPTYRKLDLKVYVTFFEIYGGKVYDLLND-KKKLRVLEDGNQQVQVVGLQEEEVSGVEEVLEL 399 (676)
T ss_pred cccchhhhhhHHHHHhcccchhhcceEEEEEEEEEeCcchhhhhcc-ccceEEeecCCceEEEeeceeeeccCHHHHHHH
Confidence 35999999999999996533 458999999999999999999986 678999999999999999999999999999999
Q ss_pred HHHHHhhccccccccCCCCCCceeEEEEEEEeecccccCCCCCcccccceeecccCccccccccccc-chhhhhhhhhhh
Q 002546 79 LSTCEAQRQIGETSLNETSSRSHQILRLTVESSACEFIGNDPSSLTATVNFVDLAGSERASQALSAG-TRLKEGCHINRS 157 (909)
Q Consensus 79 L~~G~~~R~~~sT~lN~~SSRSH~IFtI~Veq~~~e~~g~~~s~~~SkL~fVDLAGSER~skt~s~g-~rlkEg~~INkS 157 (909)
|..|++-|+.+.|..|..|||||+||+|.+.... .....+++.||||||+||...+...+ ++..||+.||+|
T Consensus 400 Ie~Gns~RtsG~TsANs~SSRSHAvfQIilr~~~-------~~k~hGKfSlIDLAGnERGaDts~adRqtRlEGAEINKS 472 (676)
T KOG0246|consen 400 IEKGNSCRTSGQTSANSNSSRSHAVFQIILRKHG-------EFKLHGKFSLIDLAGNERGADTSSADRQTRLEGAEINKS 472 (676)
T ss_pred HHhcccccccCcccCcccccccceeEeeeeecCC-------cceeEeEEEEEEccCCccCCcccccchhhhhhhhhhhHH
Confidence 9999999999999999999999999999997542 23688999999999999998775544 556799999999
Q ss_pred HHHHHHHHHHhcCCCCCcccCCCchhHHHhHhhcCC-CcccceEeecCCCCCChHHHHHHHHHHHHHhcccccce
Q 002546 158 LLTLGTVIRKLSKGRNGHVPFRDSKLTRILQSSLGG-NARTAIICTLSPARSHVEQSRNTLLFASCAKEVTTNAQ 231 (909)
Q Consensus 158 LlaLg~VI~ALs~~k~~hIPYRDSKLTrLLqdSLGG-NsrT~mIatVSPs~~~~eETLsTLrFAsRAK~Ikn~p~ 231 (909)
|++|..||+||.+++ .|+|||.||||.+|+|||-| |++|+||+||||.....+.||||||||+|+|+......
T Consensus 473 LLALKECIRaLg~nk-~H~PFR~SKLTqVLRDSFIGenSrTcMIA~ISPg~~ScEhTLNTLRYAdRVKeLsv~~~ 546 (676)
T KOG0246|consen 473 LLALKECIRALGRNK-SHLPFRGSKLTQVLRDSFIGENSRTCMIATISPGISSCEHTLNTLRYADRVKELSVDGG 546 (676)
T ss_pred HHHHHHHHHHhcCCC-CCCCchhhhHHHHHHHhhcCCCCceEEEEEeCCCcchhhhhHHHHHHHHHHHhhcCCCC
Confidence 999999999998764 49999999999999999988 99999999999999999999999999999999866554
No 27
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=100.00 E-value=2.4e-44 Score=423.26 Aligned_cols=228 Identities=35% Similarity=0.520 Sum_probs=213.0
Q ss_pred CCCcHHHHHHHHHHHHHhcC-CceEEEEEEEEEEECCeeeecCCCCC--CCceeeeCCCCCeEeccceEEEecCHHHHHH
Q 002546 1 MIGITEYTMSDIYDYIEKHK-EREFVLKFSAMEIYNESVRDLLSADT--SPLRLLDDPERGTIVEKLTEETLKDWNHLKE 77 (909)
Q Consensus 1 m~GIIprav~dLF~~Iek~~-erefsV~vS~lEIYNE~V~DLLs~~~--~~L~I~eDp~~g~~VegLtev~V~S~eell~ 77 (909)
.+|||||++.+||..+.... .+.|.+.+||+|||||.|+|||++.. ..+.|+++++++++|.+++.+.|.+.+++..
T Consensus 417 ~~Giipral~~lF~~~~~~~~g~~y~~~~s~~EIYNe~i~DlL~~~~~~~k~~I~~~~~~~~~V~~~t~~~V~s~~~v~~ 496 (670)
T KOG0239|consen 417 DPGIIPRALEKLFRTITSLKSGWKYDKTVSMLEIYNEAIRDLLSDESYVGKLEIVDDAEGNLMVPLLTVIKVGSSEEVDI 496 (670)
T ss_pred cCCccHHHHHHHHHHHHhhccCceEEeeeehhHHHHHHHHHhccccccccceeEEEcCCCceecccceEEecCCHHHHHH
Confidence 37999999999999998755 68999999999999999999999873 6899999999999999999999999999999
Q ss_pred HHHHHHhhccccccccCCCCCCceeEEEEEEEeecccccCCCCCcccccceeecccCcccccccccccchhhhhhhhhhh
Q 002546 78 LLSTCEAQRQIGETSLNETSSRSHQILRLTVESSACEFIGNDPSSLTATVNFVDLAGSERASQALSAGTRLKEGCHINRS 157 (909)
Q Consensus 78 LL~~G~~~R~~~sT~lN~~SSRSH~IFtI~Veq~~~e~~g~~~s~~~SkL~fVDLAGSER~skt~s~g~rlkEg~~INkS 157 (909)
+++.|..+|++++|.+|.+|||||+||+|+|...+. .......+.|+|||||||||+++++..|.|++|+.+||+|
T Consensus 497 ll~~g~~nRsv~~T~~Ne~SSRSH~v~~v~v~g~~~----~t~~~~~g~l~LVDLAGSER~~~s~~tG~RlkE~Q~INkS 572 (670)
T KOG0239|consen 497 LLEIGLSNRSVASTASNERSSRSHLVFRVRIRGINE----LTGIRVTGVLNLVDLAGSERVSKSGVTGERLKEAQNINKS 572 (670)
T ss_pred HHHHhhccccccccccchhhhccceEEEEEEecccc----CcccccccceeEeecccCcccCcCCCchhhhHHHHHhchh
Confidence 999999999999999999999999999999987632 2233678999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCcccCCCchhHHHhHhhcCCCcccceEeecCCCCCChHHHHHHHHHHHHHhcccccceec
Q 002546 158 LLTLGTVIRKLSKGRNGHVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAKEVTTNAQVN 233 (909)
Q Consensus 158 LlaLg~VI~ALs~~k~~hIPYRDSKLTrLLqdSLGGNsrT~mIatVSPs~~~~eETLsTLrFAsRAK~Ikn~p~vN 233 (909)
|.+||.||.||++ +..|||||+||||+||+++|||+++|+|+++|||...++.||+++|+||+|++.+...+-.-
T Consensus 573 LS~LgdVi~AL~~-k~~HiPyRNSKLT~lLq~sLGG~sKTLmfv~isP~~~~~~Etl~sL~FA~rv~~~~lG~a~~ 647 (670)
T KOG0239|consen 573 LSALGDVISALAS-KRSHIPYRNSKLTQLLQDSLGGDSKTLMFVNISPAAAALFETLCSLRFATRVRSVELGSARK 647 (670)
T ss_pred hhhhHHHHHHHhh-cCCCCcccccchHHHhHhhhCCccceeeEEEeCccHHHHhhhhhccchHHHhhceecccccc
Confidence 9999999999997 56699999999999999999999999999999999999999999999999999998776653
No 28
>KOG0247 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=2.4e-42 Score=396.06 Aligned_cols=211 Identities=30% Similarity=0.448 Sum_probs=193.1
Q ss_pred CceEEEEEEEEEEECCeeeecCCCCCC-----C-ceeeeCCCCCeEeccceEEEecCHHHHHHHHHHHHhhccccccccC
Q 002546 21 EREFVLKFSAMEIYNESVRDLLSADTS-----P-LRLLDDPERGTIVEKLTEETLKDWNHLKELLSTCEAQRQIGETSLN 94 (909)
Q Consensus 21 erefsV~vS~lEIYNE~V~DLLs~~~~-----~-L~I~eDp~~g~~VegLtev~V~S~eell~LL~~G~~~R~~~sT~lN 94 (909)
+..|.|+|||+|||||-|||||.+... . ..+++|.++..||+|+++|.|.+.+|+++||..|.++|++++|.+|
T Consensus 223 d~~ysV~VSf~EIYN~~iYDLLe~~s~q~~~~~~~ll~~d~~~~~~Vkgl~~V~VssseEA~~l~~lGqk~r~~asT~lN 302 (809)
T KOG0247|consen 223 DIVYSVFVSFVEIYNNYIYDLLEDASFQGKLQKLKLLREDTNGNMYVKGLTEVEVSSSEEALELFQLGQKRRRVASTKLN 302 (809)
T ss_pred CcEEEEEeeHHHHHHHHHHHhhccccccchhhhhhhhhhccCCCeeeccccEEEeccHHHHHHHHHHHHhhhhhhheecc
Confidence 346999999999999999999987632 3 6678899999999999999999999999999999999999999999
Q ss_pred CCCCCceeEEEEEEEeecccccCCCCCcccccceeecccCcccccccccccchhhhhhhhhhhHHHHHHHHHHhcCC---
Q 002546 95 ETSSRSHQILRLTVESSACEFIGNDPSSLTATVNFVDLAGSERASQALSAGTRLKEGCHINRSLLTLGTVIRKLSKG--- 171 (909)
Q Consensus 95 ~~SSRSH~IFtI~Veq~~~e~~g~~~s~~~SkL~fVDLAGSER~skt~s~g~rlkEg~~INkSLlaLg~VI~ALs~~--- 171 (909)
..|||||+||+|.|.+..... +......|.|.|||||||||..++.+.|.|++|+++||.||++||+||.+|..+
T Consensus 303 ~~SSRSHsVFtIkl~q~~~~~--~s~~i~vSqlsLvDLAGSERt~rtq~sG~RLrEagNINtSLmTLg~Cie~LR~nqk~ 380 (809)
T KOG0247|consen 303 ANSSRSHSVFTIKLVQAPRSQ--DSNQITVSQLSLVDLAGSERTNRTQNSGERLREAGNINTSLMTLRRCIDVLRENQKS 380 (809)
T ss_pred ccccccceeEEEEeeeccccc--ccCceeEEeeeeeecccchhcccccchhHHHHhhccccHHHHHHHHHHHHHHHHhhh
Confidence 999999999999999877541 233478899999999999999999999999999999999999999999999743
Q ss_pred -CCCcccCCCchhHHHhHhhcCCCcccceEeecCCCCCChHHHHHHHHHHHHHhcccccceec
Q 002546 172 -RNGHVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAKEVTTNAQVN 233 (909)
Q Consensus 172 -k~~hIPYRDSKLTrLLqdSLGGNsrT~mIatVSPs~~~~eETLsTLrFAsRAK~Ikn~p~vN 233 (909)
...+|||||||||++++.+|.|..+.+||+||+|...+|+|+|+.|+||.-|+.|.....++
T Consensus 381 ks~~~VPyRdSKLThlfq~~f~G~gki~MIV~vnp~~e~YdEnl~vlkFaeiaq~v~v~~~~~ 443 (809)
T KOG0247|consen 381 KSQKIVPYRDSKLTHLFKNYFDGKGKIRMIVCVNPKAEDYDENLNVLKFAEIAQEVEVARPVI 443 (809)
T ss_pred hccccCcchHHHHHHHHHHhcCCCCcEEEEEecCCchhhHHHHHHHHHHHHhcccccccCccc
Confidence 34699999999999999999999999999999999999999999999999999987776664
No 29
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.9e-42 Score=403.37 Aligned_cols=230 Identities=42% Similarity=0.649 Sum_probs=215.3
Q ss_pred CCCcHHHHHHHHHHHHHhcC-CceEEEEEEEEEEECCeeeecCCCCCCCceeeeCCCCCeEeccceEEEecCHHHHHHHH
Q 002546 1 MIGITEYTMSDIYDYIEKHK-EREFVLKFSAMEIYNESVRDLLSADTSPLRLLDDPERGTIVEKLTEETLKDWNHLKELL 79 (909)
Q Consensus 1 m~GIIprav~dLF~~Iek~~-erefsV~vS~lEIYNE~V~DLLs~~~~~L~I~eDp~~g~~VegLtev~V~S~eell~LL 79 (909)
.+||||+++.+||+.++... +..|.|.|||+|||||+++|||.+....+.++++...+++|.|+++..+.++++++.+|
T Consensus 113 ~~Gii~~~l~~lf~~l~~~~~~~~~~v~is~lEiYnEk~~DLl~~~~~~~~~~~~~~~~v~v~~l~~~~~~s~ee~l~~l 192 (568)
T COG5059 113 EPGIIPLSLKELFSKLEDLSMTKDFAVSISYLEIYNEKIYDLLSPNEESLNIREDSLLGVKVAGLTEKHVSSKEEILDLL 192 (568)
T ss_pred ccchHHHHHHHHHHHHHhcccCcceeeEeehhHHHhhHHHhhccCccccccccccCCCceEeecceEEecCChHHHHHHH
Confidence 37999999999999998765 56899999999999999999999887778899999999999999999999999999999
Q ss_pred HHHHhhccccccccCCCCCCceeEEEEEEEeecccccCCCCCcccccceeecccCcccccccccccchhhhhhhhhhhHH
Q 002546 80 STCEAQRQIGETSLNETSSRSHQILRLTVESSACEFIGNDPSSLTATVNFVDLAGSERASQALSAGTRLKEGCHINRSLL 159 (909)
Q Consensus 80 ~~G~~~R~~~sT~lN~~SSRSH~IFtI~Veq~~~e~~g~~~s~~~SkL~fVDLAGSER~skt~s~g~rlkEg~~INkSLl 159 (909)
..|..+|+++.|.+|..|||||+||++++.+..... .....++++||||||||++..++..+.+++||..||+||+
T Consensus 193 ~~~~~nr~~~~te~n~~ssRshsi~~i~~~~~~~~~----~~~~~~~l~lvDLagSE~~~~~~~~~~r~~E~~~iN~sLl 268 (568)
T COG5059 193 RKGEKNRTTASTEINDESSRSHSIFQIELASKNKVS----GTSETSKLSLVDLAGSERAARTGNRGTRLKEGASINKSLL 268 (568)
T ss_pred HHhhhhcccccchhccccccceEEEEEEEEEeccCc----cceecceEEEEeeccccccchhhcccchhhhhhhhHhhHH
Confidence 999999999999999999999999999999987532 1233479999999999999999999999999999999999
Q ss_pred HHHHHHHHhcC-CCCCcccCCCchhHHHhHhhcCCCcccceEeecCCCCCChHHHHHHHHHHHHHhcccccceecc
Q 002546 160 TLGTVIRKLSK-GRNGHVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAKEVTTNAQVNI 234 (909)
Q Consensus 160 aLg~VI~ALs~-~k~~hIPYRDSKLTrLLqdSLGGNsrT~mIatVSPs~~~~eETLsTLrFAsRAK~Ikn~p~vN~ 234 (909)
+||+||.+|.. .+..|||||+|||||+|+++|||+|+|.|||||+|+..++++|.+||+||.+|+.|++.+.+|.
T Consensus 269 ~Lg~vI~~L~~~~~~~~ipyReskLTRlLq~sLgG~~~~~~i~~Isp~~~~~~et~~tL~~a~rak~I~~~~~~~~ 344 (568)
T COG5059 269 TLGNVINALGDKKKSGHIPYRESKLTRLLQDSLGGNCNTRVICTISPSSNSFEETINTLKFASRAKSIKNKIQVNS 344 (568)
T ss_pred HHHHHHHHHhccccCCccchhhhHHHHHHHHhcCCCccEEEEEEEcCCCCchHHHHHHHHHHHHHhhcCCcccccC
Confidence 99999999985 3567999999999999999999999999999999999999999999999999999999999995
No 30
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=99.97 E-value=3.5e-31 Score=268.70 Aligned_cols=133 Identities=41% Similarity=0.635 Sum_probs=120.9
Q ss_pred CHHHHHHHHHHHHhhccccccccCCCCCCceeEEEEEEEeecccccCCCCCcccccceeecccCcccccccccccchhhh
Q 002546 71 DWNHLKELLSTCEAQRQIGETSLNETSSRSHQILRLTVESSACEFIGNDPSSLTATVNFVDLAGSERASQALSAGTRLKE 150 (909)
Q Consensus 71 S~eell~LL~~G~~~R~~~sT~lN~~SSRSH~IFtI~Veq~~~e~~g~~~s~~~SkL~fVDLAGSER~skt~s~g~rlkE 150 (909)
..++++.++..|.++|+.+.|.+|..|||||+||+|+|.+...... .......++|+||||||||+..+.+..+.+++|
T Consensus 54 ~~~~~~~ll~~g~~~R~~~~t~~N~~SSRsH~i~~i~v~~~~~~~~-~~~~~~~s~l~lVDLAGsE~~~~~~~~~~~~~e 132 (186)
T cd01363 54 TVTDVIDLMDKGNANRTTAATAMNEHSSRSHSVFRIHFGGKNALAS-ATEQPKVGKINLVDLAGSERIDFSGAEGSRLTE 132 (186)
T ss_pred HHHHHHHHHhhccccccccccCCCCccCcccEEEEEEEEEeecCCC-CccceeeeeEEEEEccccccccccCCchhhHHH
Confidence 3455999999999999999999999999999999999998765432 223367899999999999999999999999999
Q ss_pred hhhhhhhHHHHHHHHHHhcCCCCCcccCCCchhHHHhHhhcCCCcccceEeecCC
Q 002546 151 GCHINRSLLTLGTVIRKLSKGRNGHVPFRDSKLTRILQSSLGGNARTAIICTLSP 205 (909)
Q Consensus 151 g~~INkSLlaLg~VI~ALs~~k~~hIPYRDSKLTrLLqdSLGGNsrT~mIatVSP 205 (909)
++.||+||.+|++||.+|+++ ..||||||||||+||||+|||||+|+||+||||
T Consensus 133 ~~~in~sl~~L~~~i~~l~~~-~~~vpyr~SkLT~lL~~~L~g~~~t~~i~~vsP 186 (186)
T cd01363 133 TANINKSLSTLGNVISALAER-DSHVPYRESKLTRLLQDSLGGNSRTLMVACISP 186 (186)
T ss_pred HHHHhhHHHHHHHHHHHHhcC-CCCCCCcccHHHHHHHHhcCCCCeEEEEEEeCc
Confidence 999999999999999999875 469999999999999999999999999999998
No 31
>PRK10884 SH3 domain-containing protein; Provisional
Probab=82.03 E-value=3.3 Score=44.17 Aligned_cols=76 Identities=17% Similarity=0.169 Sum_probs=49.3
Q ss_pred cCHHHHHHHHHHHHHHHHHHHhcCCCCCCC--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 002546 236 MSDKALVKHLQRELSRLENELRGSGPVFIT--PDSVSVLREKDLRIEKLEKEVDELTMQRDLARTEVENLLRGAGKGS 311 (909)
Q Consensus 236 ~s~k~lik~Lq~Ei~~Le~eLr~~~~~~~~--~d~~~~l~ekd~~IekLe~ei~eL~~q~d~aq~el~~L~~~~~~~~ 311 (909)
++....+..+++|++.|+.+|......... .+....+.+.+.+|.+|++++.+|+.++..++++++.+.....+.+
T Consensus 89 p~~~~rlp~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~ 166 (206)
T PRK10884 89 PSLRTRVPDLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQ 166 (206)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677889999999999998775433110 1112333445556677788888888887777777776655554443
No 32
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=80.02 E-value=9.7 Score=38.98 Aligned_cols=66 Identities=18% Similarity=0.312 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 002546 239 KALVKHLQRELSRLENELRGSGPVFITPDSVSVLREKDLRIEKLEKEVDELTMQRDLARTEVENLLRGAG 308 (909)
Q Consensus 239 k~lik~Lq~Ei~~Le~eLr~~~~~~~~~d~~~~l~ekd~~IekLe~ei~eL~~q~d~aq~el~~L~~~~~ 308 (909)
....++|++|+.+|+.|++.... .|.-+.-...+.++.++++|++++.+++...+..++.....+-
T Consensus 39 ~~~~~~l~~Ei~~l~~E~~~iS~----qDeFAkwaKl~Rk~~kl~~el~~~~~~~~~~~~~~~~~~~~~~ 104 (161)
T PF04420_consen 39 SKEQRQLRKEILQLKRELNAISA----QDEFAKWAKLNRKLDKLEEELEKLNKSLSSEKSSFDKSLSKVL 104 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHTTS-T----TTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH-
T ss_pred cHHHHHHHHHHHHHHHHHHcCCc----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678999999999999987643 3555555567888999999999999999988888876666544
No 33
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=79.77 E-value=0.44 Score=57.59 Aligned_cols=81 Identities=41% Similarity=0.485 Sum_probs=65.5
Q ss_pred HHHhhccccccccCCCCCCceeEEEEEEEeecccccCCCCCcccccceeecccCcccccccccccchhhhhhhhhhhHHH
Q 002546 81 TCEAQRQIGETSLNETSSRSHQILRLTVESSACEFIGNDPSSLTATVNFVDLAGSERASQALSAGTRLKEGCHINRSLLT 160 (909)
Q Consensus 81 ~G~~~R~~~sT~lN~~SSRSH~IFtI~Veq~~~e~~g~~~s~~~SkL~fVDLAGSER~skt~s~g~rlkEg~~INkSLla 160 (909)
.....+....+.+|..++++|++|+........ ....-.++.|||||+||. -....|.++++...+|++|..
T Consensus 486 ~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-------~~~~~~~n~~~~~~~e~~-~s~~~~~~l~~~~~~~k~l~~ 557 (568)
T COG5059 486 KASKLRSSASTKLNLRSSRSHSKFRDHLNGSNS-------STKELSLNQVDLAGSERK-VSQSVGELLRETQSLNKSLSS 557 (568)
T ss_pred hhccchhhcccchhhhhcccchhhhhcccchhh-------hhHHHHhhhhhccccccc-hhhhhHHHHHhhHhhhhcccc
Confidence 456778888899999999999999877643321 111111799999999999 888899999999999999999
Q ss_pred HHHHHHHhc
Q 002546 161 LGTVIRKLS 169 (909)
Q Consensus 161 Lg~VI~ALs 169 (909)
++.+|.++.
T Consensus 558 ~~d~~~~~~ 566 (568)
T COG5059 558 LGDVIHALG 566 (568)
T ss_pred chhhhhhcc
Confidence 999998763
No 34
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=57.34 E-value=3.6 Score=50.36 Aligned_cols=47 Identities=28% Similarity=0.473 Sum_probs=1.2
Q ss_pred HHHHHHHHHHHhhhcccceeehheeeeeecCCCCCceE--EEEEeehhh
Q 002546 734 FKRLQREIIELWHACNVSLVHRTYFFLLFKGDPKDSIY--MEVEQRRLS 780 (909)
Q Consensus 734 F~~~~~~IIeLW~~CnVSlvHRTyFfLLFkGd~~D~iY--mEVElRRL~ 780 (909)
.++.|.+|-+||+.|++|--.|..|--.|-.+.++.+- +|.|+-||.
T Consensus 288 I~~~R~ei~elWd~~~~s~eer~~F~~~~~d~~~E~lL~~hE~Ei~~Lk 336 (619)
T PF03999_consen 288 IEKKRQEIEELWDKCHYSEEERQAFTPFYIDSYTEELLELHEEEIERLK 336 (619)
T ss_dssp -----------------------------------------------HH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHhcccchHHHHHHHHHHHHHHH
Confidence 47889999999999999999999988888766666654 899998874
No 35
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=55.76 E-value=85 Score=28.40 Aligned_cols=52 Identities=21% Similarity=0.229 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 002546 241 LVKHLQRELSRLENELRGSGPVFITPDSVSVLREKDLRIEKLEKEVDELTMQRDLARTEVENLLRGAG 308 (909)
Q Consensus 241 lik~Lq~Ei~~Le~eLr~~~~~~~~~d~~~~l~ekd~~IekLe~ei~eL~~q~d~aq~el~~L~~~~~ 308 (909)
.|..|+.+++.|+.+-.. ...+...|+.++.+|+.++...+.+++.|+..+.
T Consensus 19 ti~~Lq~e~eeLke~n~~----------------L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl~ 70 (72)
T PF06005_consen 19 TIALLQMENEELKEKNNE----------------LKEENEELKEENEQLKQERNAWQERLRSLLGKLE 70 (72)
T ss_dssp HHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 456667777776654321 1245677888999999999999999998887664
No 36
>PF14282 FlxA: FlxA-like protein
Probab=52.62 E-value=61 Score=31.09 Aligned_cols=59 Identities=15% Similarity=0.252 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002546 239 KALVKHLQRELSRLENELRGSGPVFITPDSVSVLREKDLRIEKLEKEVDELTMQRDLARTEVEN 302 (909)
Q Consensus 239 k~lik~Lq~Ei~~Le~eLr~~~~~~~~~d~~~~l~ekd~~IekLe~ei~eL~~q~d~aq~el~~ 302 (909)
...|..|+++|..|..+|....... ..-.+++..+++.|..+|..|..|+..++.+...
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~l~~~~-----~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~~~ 76 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQELSQDS-----DLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQQAE 76 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccc-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5689999999999999997664321 0122355667777888888888887766665543
No 37
>PRK04406 hypothetical protein; Provisional
Probab=48.01 E-value=1.3e+02 Score=27.42 Aligned_cols=50 Identities=14% Similarity=0.253 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 002546 244 HLQRELSRLENELRGSGPVFITPDSVSVLREKDLRIEKLEKEVDELTMQRDLARTEVENLLRGAGK 309 (909)
Q Consensus 244 ~Lq~Ei~~Le~eLr~~~~~~~~~d~~~~l~ekd~~IekLe~ei~eL~~q~d~aq~el~~L~~~~~~ 309 (909)
.+...|..|+..+.. .+..|+.|.+.+.+...+++.++.++..|.+.+..
T Consensus 8 ~le~Ri~~LE~~lAf----------------QE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~ 57 (75)
T PRK04406 8 QLEERINDLECQLAF----------------QEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKN 57 (75)
T ss_pred HHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455566666665532 23334555555555555555555555555444433
No 38
>PRK11637 AmiB activator; Provisional
Probab=46.25 E-value=84 Score=36.75 Aligned_cols=23 Identities=22% Similarity=0.364 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 002546 279 IEKLEKEVDELTMQRDLARTEVE 301 (909)
Q Consensus 279 IekLe~ei~eL~~q~d~aq~el~ 301 (909)
|..++.++..++.+++.++.+++
T Consensus 98 i~~~~~ei~~l~~eI~~~q~~l~ 120 (428)
T PRK11637 98 LNQLNKQIDELNASIAKLEQQQA 120 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 39
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=46.04 E-value=41 Score=33.22 Aligned_cols=35 Identities=26% Similarity=0.384 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 002546 275 KDLRIEKLEKEVDELTMQRDLARTEVENLLRGAGK 309 (909)
Q Consensus 275 kd~~IekLe~ei~eL~~q~d~aq~el~~L~~~~~~ 309 (909)
.........+++..|+.+...++.+++.+++.+|+
T Consensus 59 ~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGE 93 (120)
T PF12325_consen 59 ENEELRALKKEVEELEQELEELQQRYQTLLELLGE 93 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34445556677777788888888888888888876
No 40
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=43.90 E-value=67 Score=31.07 Aligned_cols=64 Identities=23% Similarity=0.279 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 002546 244 HLQRELSRLENELRGSGPVFITPDSVSVLREKDLRIEKLEKEVDELTMQRDLARTEVENLLRGAGK 309 (909)
Q Consensus 244 ~Lq~Ei~~Le~eLr~~~~~~~~~d~~~~l~ekd~~IekLe~ei~eL~~q~d~aq~el~~L~~~~~~ 309 (909)
.|+.++..|+.-+-.-... ..+....++.++..|.+++.|+.-|...++.+..+++.|+..+..
T Consensus 9 KLraQ~~vLKKaVieEQ~k--~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~~ 72 (102)
T PF10205_consen 9 KLRAQNQVLKKAVIEEQAK--NAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELEE 72 (102)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555443211100 123456677888899999999999999999999999988888774
No 41
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.62 E-value=37 Score=37.80 Aligned_cols=41 Identities=15% Similarity=0.114 Sum_probs=28.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 002546 269 VSVLREKDLRIEKLEKEVDELTMQRDLARTEVENLLRGAGK 309 (909)
Q Consensus 269 ~~~l~ekd~~IekLe~ei~eL~~q~d~aq~el~~L~~~~~~ 309 (909)
.....+.+.+|.+++.+|.+|+.+++.+...|.+....+++
T Consensus 65 ~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~ 105 (265)
T COG3883 65 QSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKK 105 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555667777777777777777777777777766665555
No 42
>PRK02119 hypothetical protein; Provisional
Probab=43.05 E-value=2.3e+02 Score=25.65 Aligned_cols=31 Identities=13% Similarity=0.181 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 002546 279 IEKLEKEVDELTMQRDLARTEVENLLRGAGK 309 (909)
Q Consensus 279 IekLe~ei~eL~~q~d~aq~el~~L~~~~~~ 309 (909)
|+.|.+.+.+...+++.++.++..|.+.+.+
T Consensus 25 ie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~ 55 (73)
T PRK02119 25 LEELNQALIEQQFVIDKMQVQLRYMANKLKD 55 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444444444444444444444444444433
No 43
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=41.44 E-value=1.1e+02 Score=34.55 Aligned_cols=36 Identities=19% Similarity=0.239 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 002546 275 KDLRIEKLEKEVDELTMQRDLARTEVENLLRGAGKG 310 (909)
Q Consensus 275 kd~~IekLe~ei~eL~~q~d~aq~el~~L~~~~~~~ 310 (909)
...+.+.++.++.++..++..++++|.++.+...+.
T Consensus 235 l~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~ 270 (325)
T PF08317_consen 235 LQEELEELEEKIEELEEQKQELLAEIAEAEKIREEC 270 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444445555555555555555555555554443
No 44
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=39.97 E-value=98 Score=33.62 Aligned_cols=18 Identities=22% Similarity=0.327 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHhcCC
Q 002546 243 KHLQRELSRLENELRGSG 260 (909)
Q Consensus 243 k~Lq~Ei~~Le~eLr~~~ 260 (909)
++++++...++..+...+
T Consensus 130 ~~~~~~~~~lk~~~~~~~ 147 (216)
T KOG1962|consen 130 EKAMKENEALKKQLENSS 147 (216)
T ss_pred HHHHHHHHHHHHhhhccc
Confidence 344455666666555543
No 45
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=39.90 E-value=2.2e+02 Score=26.61 Aligned_cols=69 Identities=20% Similarity=0.190 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCcchhHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002546 240 ALVKHLQRELSRLENELRGSGPVFITPDSVSVL------------REKDLRIEKLEKEVDELTMQRDLARTEVENLLRGA 307 (909)
Q Consensus 240 ~lik~Lq~Ei~~Le~eLr~~~~~~~~~d~~~~l------------~ekd~~IekLe~ei~eL~~q~d~aq~el~~L~~~~ 307 (909)
.-+..|+.++..|+..++...+.....-....| +-+..+.+.+..++..|+..-..++.+...|.+.+
T Consensus 19 ~e~~~L~~~~~~L~~~~R~~~GedL~~Ls~~eL~~LE~~Le~aL~~VR~rK~~~l~~~i~~l~~ke~~l~~en~~L~~~~ 98 (100)
T PF01486_consen 19 QEIAKLRKENESLQKELRHLMGEDLESLSLKELQQLEQQLESALKRVRSRKDQLLMEQIEELKKKERELEEENNQLRQKI 98 (100)
T ss_pred HHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 457788888888988888775543322111111 11233444567777777777777777666666655
Q ss_pred c
Q 002546 308 G 308 (909)
Q Consensus 308 ~ 308 (909)
.
T Consensus 99 ~ 99 (100)
T PF01486_consen 99 E 99 (100)
T ss_pred c
Confidence 3
No 46
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=39.76 E-value=1.6e+02 Score=26.07 Aligned_cols=35 Identities=23% Similarity=0.113 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 002546 277 LRIEKLEKEVDELTMQRDLARTEVENLLRGAGKGS 311 (909)
Q Consensus 277 ~~IekLe~ei~eL~~q~d~aq~el~~L~~~~~~~~ 311 (909)
..|+.|.+.+.+...+++.++.++..|.+.+.+..
T Consensus 18 ~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 18 DTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34455555555555555555555555555554443
No 47
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=39.12 E-value=1.7e+02 Score=34.26 Aligned_cols=46 Identities=13% Similarity=0.202 Sum_probs=27.8
Q ss_pred hhHHHHHHHHHHhcCCCCCcccCCCchhHHHhHhhcCCCcccceEeecC
Q 002546 156 RSLLTLGTVIRKLSKGRNGHVPFRDSKLTRILQSSLGGNARTAIICTLS 204 (909)
Q Consensus 156 kSLlaLg~VI~ALs~~k~~hIPYRDSKLTrLLqdSLGGNsrT~mIatVS 204 (909)
.-|..+-.++..-+.. .++.+|+---=+=|.+.+|.+++ ++|+.+.
T Consensus 194 e~l~~F~~l~~~T~~R--~~f~~r~~~Yf~~l~~~f~d~a~-~~~A~l~ 239 (406)
T PF02388_consen 194 EELDDFYDLYKETAER--KGFSIRSLEYFENLYDAFGDKAK-FFLAELN 239 (406)
T ss_dssp HHHHHHHHHHHHHHHH--TT-----HHHHHHHHHHCCCCEE-EEEEEEC
T ss_pred HHHHHHHHHHHHHHhh--CCCcccCHHHHHHHHHhcCCCeE-EEEEEEc
Confidence 3466777777776643 35677877666777788877755 7888875
No 48
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=38.71 E-value=1.4e+02 Score=33.68 Aligned_cols=10 Identities=30% Similarity=0.451 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q 002546 297 RTEVENLLRG 306 (909)
Q Consensus 297 q~el~~L~~~ 306 (909)
+.+|++|.+.
T Consensus 123 RkEIkQLkQv 132 (305)
T PF15290_consen 123 RKEIKQLKQV 132 (305)
T ss_pred HHHHHHHHHH
Confidence 3334444333
No 49
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=38.63 E-value=1.6e+02 Score=32.17 Aligned_cols=133 Identities=12% Similarity=0.131 Sum_probs=71.0
Q ss_pred hhhhhhhhHHHHHHHHHHhcCCCCCcccCCCchhHHHhHhhcCCCcccceEeecCCCCCChHHHHHHHHHHHHHhccccc
Q 002546 150 EGCHINRSLLTLGTVIRKLSKGRNGHVPFRDSKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAKEVTTN 229 (909)
Q Consensus 150 Eg~~INkSLlaLg~VI~ALs~~k~~hIPYRDSKLTrLLqdSLGGNsrT~mIatVSPs~~~~eETLsTLrFAsRAK~Ikn~ 229 (909)
|...+.+....+.+.+.... ++|-.-+.--. ..-++.....|..-|-+ ..+++.+..|. ..-.|...
T Consensus 57 ev~d~~~a~~~i~~~~~~~g----G~i~~~~~~~~----~~~~~~~~~~ltiRVP~--~~~~~~l~~l~---~~g~v~~~ 123 (262)
T PF14257_consen 57 EVKDVEKAVKKIENLVESYG----GYIESSSSSSS----GGSDDERSASLTIRVPA--DKFDSFLDELS---ELGKVTSR 123 (262)
T ss_pred EECCHHHHHHHHHHHHHHcC----CEEEEEeeecc----cCCCCcceEEEEEEECH--HHHHHHHHHHh---ccCceeee
Confidence 44456666666666666652 22211110000 11122333444445533 46887777777 22233322
Q ss_pred ceecccc-----CHHHHHHHHHHHHHHHHHHHhcCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002546 230 AQVNIVM-----SDKALVKHLQRELSRLENELRGSGPVFITPDSVSVLREKDLRIEKLEKEVDELTMQRDLARTEVENLL 304 (909)
Q Consensus 230 p~vN~~~-----s~k~lik~Lq~Ei~~Le~eLr~~~~~~~~~d~~~~l~ekd~~IekLe~ei~eL~~q~d~aq~el~~L~ 304 (909)
-.....+ +..+.++.++.+..+|..-|...+. -..+-+++.++.+.+.++|.++.++..|.
T Consensus 124 ~~~~~DvT~~y~D~~arl~~l~~~~~rl~~ll~ka~~--------------~~d~l~ie~~L~~v~~eIe~~~~~~~~l~ 189 (262)
T PF14257_consen 124 NISSEDVTEQYVDLEARLKNLEAEEERLLELLEKAKT--------------VEDLLEIERELSRVRSEIEQLEGQLKYLD 189 (262)
T ss_pred eccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222 2234566777777777776654321 12355678888888888888888888777
Q ss_pred HHhcC
Q 002546 305 RGAGK 309 (909)
Q Consensus 305 ~~~~~ 309 (909)
+.+.=
T Consensus 190 ~~v~~ 194 (262)
T PF14257_consen 190 DRVDY 194 (262)
T ss_pred Hhhce
Confidence 76643
No 50
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=38.42 E-value=1.7e+02 Score=27.99 Aligned_cols=39 Identities=23% Similarity=0.280 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 002546 270 SVLREKDLRIEKLEKEVDELTMQRDLARTEVENLLRGAG 308 (909)
Q Consensus 270 ~~l~ekd~~IekLe~ei~eL~~q~d~aq~el~~L~~~~~ 308 (909)
........+++.++..+..|..+.+.++..+.++.+.+.
T Consensus 67 e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~ 105 (110)
T TIGR02338 67 EAIQELKEKKETLELRVKTLQRQEERLREQLKELQEKIQ 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445556666777777777777777766666665543
No 51
>PRK00295 hypothetical protein; Provisional
Probab=36.56 E-value=2.4e+02 Score=25.13 Aligned_cols=27 Identities=11% Similarity=0.145 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002546 276 DLRIEKLEKEVDELTMQRDLARTEVEN 302 (909)
Q Consensus 276 d~~IekLe~ei~eL~~q~d~aq~el~~ 302 (909)
+..+.+..++|..|+.++..+..++.+
T Consensus 25 n~~v~~Qq~~I~~L~~ql~~L~~rl~~ 51 (68)
T PRK00295 25 NDVLVEQQRVIERLQLQMAALIKRQEE 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444445555554444444443
No 52
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=35.74 E-value=1.2e+02 Score=37.50 Aligned_cols=33 Identities=30% Similarity=0.431 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002546 274 EKDLRIEKLEKEVDELTMQRDLARTEVENLLRG 306 (909)
Q Consensus 274 ekd~~IekLe~ei~eL~~q~d~aq~el~~L~~~ 306 (909)
.++.+|..|++++.+-++..+.+..++..+.+.
T Consensus 478 ~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~k~ 510 (652)
T COG2433 478 ARDRRIERLEKELEEKKKRVEELERKLAELRKM 510 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666666666666655543
No 53
>PRK11637 AmiB activator; Provisional
Probab=34.46 E-value=1.4e+02 Score=34.97 Aligned_cols=38 Identities=18% Similarity=0.255 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 002546 272 LREKDLRIEKLEKEVDELTMQRDLARTEVENLLRGAGK 309 (909)
Q Consensus 272 l~ekd~~IekLe~ei~eL~~q~d~aq~el~~L~~~~~~ 309 (909)
+.+.+.+|..++++|.+++.+++..+..+..+.+.+-.
T Consensus 98 i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra~Y~ 135 (428)
T PRK11637 98 LNQLNKQIDELNASIAKLEQQQAAQERLLAAQLDAAFR 135 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555555555555555555554443
No 54
>KOG3990 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.26 E-value=84 Score=34.84 Aligned_cols=63 Identities=22% Similarity=0.346 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCcchhHHHHHHHHHHHHHH------HHHHHHHH-HHHHHHHHHHHHHHHhcCCC
Q 002546 240 ALVKHLQRELSRLENELRGSGPVFITPDSVSVLREKDLRIEKLE------KEVDELTM-QRDLARTEVENLLRGAGKGS 311 (909)
Q Consensus 240 ~lik~Lq~Ei~~Le~eLr~~~~~~~~~d~~~~l~ekd~~IekLe------~ei~eL~~-q~d~aq~el~~L~~~~~~~~ 311 (909)
..+.+|++||++|+..|...... +-+++.+|-.|. ++++.+-. ..+.++.++++.++++....
T Consensus 225 V~i~~lkeeia~Lkk~L~qkdq~---------ileKdkqisnLKad~e~~~~~ek~Hke~v~qL~~k~~~~lk~~a~l~ 294 (305)
T KOG3990|consen 225 VKIQKLKEEIARLKKLLHQKDQL---------ILEKDKQISNLKADKEYQKELEKKHKERVQQLQKKKEESLKAIAQLR 294 (305)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHH---------HHhhhhhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46889999999999988765432 224444444332 22333322 24555566666666665544
No 55
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=34.09 E-value=1.2e+02 Score=31.43 Aligned_cols=30 Identities=27% Similarity=0.392 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002546 276 DLRIEKLEKEVDELTMQRDLARTEVENLLR 305 (909)
Q Consensus 276 d~~IekLe~ei~eL~~q~d~aq~el~~L~~ 305 (909)
..+|+++++|+.+.+.+.+.++.+.+++.+
T Consensus 160 ~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ 189 (192)
T PF05529_consen 160 SEEIEKLKKELEKKEKEIEALKKQSEGLQK 189 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555555555555555555555555544
No 56
>PRK04325 hypothetical protein; Provisional
Probab=33.41 E-value=3.7e+02 Score=24.37 Aligned_cols=29 Identities=21% Similarity=0.266 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002546 279 IEKLEKEVDELTMQRDLARTEVENLLRGA 307 (909)
Q Consensus 279 IekLe~ei~eL~~q~d~aq~el~~L~~~~ 307 (909)
|+.|.+.+.+...+++.++.++..|.+.+
T Consensus 25 Ie~LN~vv~~Qq~~I~~L~~ql~~L~~rl 53 (74)
T PRK04325 25 IDGLNATVARQQQTLDLLQAQLRLLYQQM 53 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444433
No 57
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.39 E-value=3.3e+02 Score=24.90 Aligned_cols=60 Identities=18% Similarity=0.228 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 002546 240 ALVKHLQRELSRLENELRGSGPVFITPDSVSVLREKDLRIEKLEKEVDELTMQRDLARTEVENLLRGAG 308 (909)
Q Consensus 240 ~lik~Lq~Ei~~Le~eLr~~~~~~~~~d~~~~l~ekd~~IekLe~ei~eL~~q~d~aq~el~~L~~~~~ 308 (909)
..|.-||-||..|+.+-... .....+....++.|+.++.+|+.+-..-+.++..|+-.+.
T Consensus 18 dTI~LLQmEieELKEknn~l---------~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsLLGkme 77 (79)
T COG3074 18 DTITLLQMEIEELKEKNNSL---------SQEVQNAQHQREALERENEQLKEEQNGWQERLRALLGKME 77 (79)
T ss_pred HHHHHHHHHHHHHHHHhhHh---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 34666788888877654322 1122233455677888888888888877887777765543
No 58
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=33.25 E-value=2.7e+02 Score=25.58 Aligned_cols=44 Identities=30% Similarity=0.346 Sum_probs=32.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 002546 267 DSVSVLREKDLRIEKLEKEVDELTMQRDLARTEVENLLRGAGKG 310 (909)
Q Consensus 267 d~~~~l~ekd~~IekLe~ei~eL~~q~d~aq~el~~L~~~~~~~ 310 (909)
+..........+++.++.++..|..+...+..++.++...+...
T Consensus 59 ~~~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~~~ 102 (106)
T PF01920_consen 59 DKEEAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLYEL 102 (106)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455566677788888888888888888888888877766543
No 59
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=32.66 E-value=2.5e+02 Score=29.50 Aligned_cols=58 Identities=24% Similarity=0.384 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002546 238 DKALVKHLQRELSRLENELRGSGPVFITPDSVSVLREKDLRIEKLEKEVDELTMQRDLARTEVENLL 304 (909)
Q Consensus 238 ~k~lik~Lq~Ei~~Le~eLr~~~~~~~~~d~~~~l~ekd~~IekLe~ei~eL~~q~d~aq~el~~L~ 304 (909)
....+..|+.++..|+.++.. ....+++++.-++.+.+|+.-|..+...+..++..|.
T Consensus 114 ~~~~l~~l~~~~~~L~~~~~~---------l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~ 171 (194)
T PF08614_consen 114 KERRLAELEAELAQLEEKIKD---------LEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLE 171 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566777777777766643 2445556666666666666666665555555554443
No 60
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=31.67 E-value=2e+02 Score=27.89 Aligned_cols=32 Identities=22% Similarity=0.344 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002546 274 EKDLRIEKLEKEVDELTMQRDLARTEVENLLR 305 (909)
Q Consensus 274 ekd~~IekLe~ei~eL~~q~d~aq~el~~L~~ 305 (909)
+...++..|.+|+..|+.+++.++.++..+.+
T Consensus 26 ~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 26 ELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34455667777777777777777777776655
No 61
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=31.49 E-value=4e+02 Score=24.14 Aligned_cols=60 Identities=20% Similarity=0.265 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002546 239 KALVKHLQRELSRLENELRGSGPVFITPDSVSVLREKDLRIEKLEKEVDELTMQRDLARTEVENLLRGA 307 (909)
Q Consensus 239 k~lik~Lq~Ei~~Le~eLr~~~~~~~~~d~~~~l~ekd~~IekLe~ei~eL~~q~d~aq~el~~L~~~~ 307 (909)
...|.+|+.|-..|-..--. ....++....++..+++++..|...++.+..++..|....
T Consensus 11 De~Ia~L~eEGekLSk~el~---------~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l 70 (74)
T PF12329_consen 11 DEQIAQLMEEGEKLSKKELK---------LNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERL 70 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHh---------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35667777776666542211 1122233334455666666677666666666666665544
No 62
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=31.05 E-value=49 Score=33.76 Aligned_cols=18 Identities=33% Similarity=0.517 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHhcC
Q 002546 242 VKHLQRELSRLENELRGS 259 (909)
Q Consensus 242 ik~Lq~Ei~~Le~eLr~~ 259 (909)
+..|+.++..|+.+|...
T Consensus 88 l~~l~~~~k~l~~eL~~L 105 (169)
T PF07106_consen 88 LAELKKEVKSLEAELASL 105 (169)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444555555555555544
No 63
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=29.99 E-value=1.4e+02 Score=26.13 Aligned_cols=28 Identities=32% Similarity=0.580 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002546 276 DLRIEKLEKEVDELTMQRDLARTEVENL 303 (909)
Q Consensus 276 d~~IekLe~ei~eL~~q~d~aq~el~~L 303 (909)
..++..+++++.+++.+++.++.+++.|
T Consensus 23 ~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 23 NQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444444444444444444443
No 64
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=29.91 E-value=2.4e+02 Score=29.43 Aligned_cols=35 Identities=23% Similarity=0.308 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 002546 275 KDLRIEKLEKEVDELTMQRDLARTEVENLLRGAGK 309 (909)
Q Consensus 275 kd~~IekLe~ei~eL~~q~d~aq~el~~L~~~~~~ 309 (909)
...+++.|++++..|..+....+..++.|...+..
T Consensus 116 l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~R 150 (161)
T TIGR02894 116 LQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDR 150 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567778888888888888888888877776654
No 65
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=29.76 E-value=3.4e+02 Score=26.83 Aligned_cols=45 Identities=18% Similarity=0.248 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhcccccceeccccCHHHHHHHHHHHHHHHHHHHhcC
Q 002546 214 RNTLLFASCAKEVTTNAQVNIVMSDKALVKHLQRELSRLENELRGS 259 (909)
Q Consensus 214 LsTLrFAsRAK~Ikn~p~vN~~~s~k~lik~Lq~Ei~~Le~eLr~~ 259 (909)
++.-.||..+-...|.+... ..+....+++|..-|+.+..+|+..
T Consensus 8 Fd~~~fan~ll~~~~~~~~~-~ld~~~~l~kL~~~i~eld~~i~~~ 52 (132)
T PF10392_consen 8 FDPVQFANDLLKSTNNNSDS-ELDISTPLKKLNFDIQELDKRIRSQ 52 (132)
T ss_pred CCHHHHHHHHHHhhcCCCCC-cccHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667888777766655333 4556677888888888888887654
No 66
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=29.70 E-value=2.6e+02 Score=28.37 Aligned_cols=34 Identities=26% Similarity=0.296 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 002546 275 KDLRIEKLEKEVDELTMQRDLARTEVENLLRGAG 308 (909)
Q Consensus 275 kd~~IekLe~ei~eL~~q~d~aq~el~~L~~~~~ 308 (909)
...++++|..|+..+..++|.++..++.|..-+-
T Consensus 86 L~qqv~~L~~e~s~~~~E~da~k~k~e~l~~~~~ 119 (135)
T KOG4196|consen 86 LQQQVEKLKEENSRLRRELDAYKSKYEALQNSAV 119 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3456778888888888899999888888877654
No 67
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=29.61 E-value=1.1e+02 Score=32.13 Aligned_cols=70 Identities=14% Similarity=0.187 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 002546 240 ALVKHLQRELSRLENELRGSGPVFITPDSVSVLREKDLRIEKLEKEVDELTMQRDLARTEVENLLRGAGK 309 (909)
Q Consensus 240 ~lik~Lq~Ei~~Le~eLr~~~~~~~~~d~~~~l~ekd~~IekLe~ei~eL~~q~d~aq~el~~L~~~~~~ 309 (909)
+-...|..+|.+|..+++.......+-+..-..-...+.++.|+++|.+|+++....+.++.++......
T Consensus 79 eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~~k~g~~~ 148 (201)
T KOG4603|consen 79 EELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKNIKAGTNH 148 (201)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3455666777777776665543321111111111244567778888888888888888888777665444
No 68
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=29.24 E-value=2.3e+02 Score=25.06 Aligned_cols=30 Identities=30% Similarity=0.422 Sum_probs=19.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002546 269 VSVLREKDLRIEKLEKEVDELTMQRDLART 298 (909)
Q Consensus 269 ~~~l~ekd~~IekLe~ei~eL~~q~d~aq~ 298 (909)
...|++.+.++..|+.+|..|+.+.+.+++
T Consensus 31 e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~ 60 (61)
T PF08826_consen 31 ESKLQEAEKRNRELEQEIERLKKEMEELRS 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 445666666777777777777777766654
No 69
>KOG2959 consensus Transcriptional regulator [Transcription]
Probab=29.17 E-value=41 Score=35.86 Aligned_cols=54 Identities=22% Similarity=0.401 Sum_probs=36.4
Q ss_pred HhhCcCCCCcchh-------hHHhhhcCCcc--chhhHHH------HHHHHHHHhccc---CCC-chhhhhhc
Q 002546 833 LKWGIGLQTKHRS-------LQLAHLLWTSK--DLNHVAE------SAAIVSKLVTFV---KPD-QAFREMFG 886 (909)
Q Consensus 833 ~kwgi~l~~k~Rr-------lql~~~lWt~~--d~~hv~e------Sa~~Vaklv~f~---e~~-~~~kemf~ 886 (909)
-+|.||..-|-|- .|-..++=..+ ||+.|-+ --+|.-||+.|| |+| +-+|+||.
T Consensus 115 ~~~kiPpePkg~~s~eL~~KI~k~y~~k~k~~mdmnrliq~~keFRNPsiydkLi~FcdI~E~gTnypkdm~D 187 (238)
T KOG2959|consen 115 PHWKIPPEPKGEVSTELEKKIKKFYKLKAKGIMDMNRLIQDNKEFRNPSIYDKLIDFCDIKEPGTNYPKDMWD 187 (238)
T ss_pred ccccCCCCCCCcccHHHHHHHHHHHHHHhhcchhHHHHHhhhhhccCcHHHHHHHHHhccccccccCChhhcC
Confidence 4799999988763 33333344445 6666655 347999999999 455 56777764
No 70
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=28.50 E-value=2.9e+02 Score=24.71 Aligned_cols=60 Identities=20% Similarity=0.251 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002546 240 ALVKHLQRELSRLENELRGSGPVFITPDSVSVLREKDLRIEKLEKEVDELTMQRDLARTEVENLL 304 (909)
Q Consensus 240 ~lik~Lq~Ei~~Le~eLr~~~~~~~~~d~~~~l~ekd~~IekLe~ei~eL~~q~d~aq~el~~L~ 304 (909)
.+...|..++.....+|+..= .+....+-.-...|..|+..+.++...+..++..++.+.
T Consensus 26 ~~~~~L~~~i~~~~~eLr~~V-----~~nY~~fI~as~~I~~m~~~~~~l~~~l~~l~~~~~~l~ 85 (87)
T PF08700_consen 26 QLENKLRQEIEEKDEELRKLV-----YENYRDFIEASDEISSMENDLSELRNLLSELQQSIQSLQ 85 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455667777777777776541 122333444556777888888888888777777766654
No 71
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=27.76 E-value=2.5e+02 Score=26.59 Aligned_cols=37 Identities=19% Similarity=0.268 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 002546 273 REKDLRIEKLEKEVDELTMQRDLARTEVENLLRGAGK 309 (909)
Q Consensus 273 ~ekd~~IekLe~ei~eL~~q~d~aq~el~~L~~~~~~ 309 (909)
...+.+++.++.++..+..+.+.++.++.++...+.+
T Consensus 66 ~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~ 102 (105)
T cd00632 66 TELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQ 102 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555666666666666666666666666555443
No 72
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=27.30 E-value=4.6e+02 Score=28.68 Aligned_cols=33 Identities=18% Similarity=0.219 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 002546 276 DLRIEKLEKEVDELTMQRDLARTEVENLLRGAG 308 (909)
Q Consensus 276 d~~IekLe~ei~eL~~q~d~aq~el~~L~~~~~ 308 (909)
+.+...|+++.+++..+-|.+-.+.+.|+.++.
T Consensus 178 ~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 178 QKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence 334445555555555555555555555555543
No 73
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=26.75 E-value=1.9e+02 Score=37.98 Aligned_cols=64 Identities=27% Similarity=0.398 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 002546 240 ALVKHLQRELSRLENELRGSGPVFITPDSVSVLREKDLRIEKLEKEVDELTMQRDLARTEVENLLRGAGKGS 311 (909)
Q Consensus 240 ~lik~Lq~Ei~~Le~eLr~~~~~~~~~d~~~~l~ekd~~IekLe~ei~eL~~q~d~aq~el~~L~~~~~~~~ 311 (909)
.-++.|.++|+.+++++.. .....+.+...+++.|+++++.++.++..++.+++++.+.+-+.+
T Consensus 372 ~~~d~l~k~I~~~~~~~~~--------~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ 435 (1074)
T KOG0250|consen 372 KEVDRLEKQIADLEKQTNN--------ELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEE 435 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHh--------hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3455566666666665522 123344556666777777777777777777777776666655543
No 74
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.38 E-value=5.1e+02 Score=23.79 Aligned_cols=39 Identities=15% Similarity=0.169 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 002546 276 DLRIEKLEKEVDELTMQRDLARTEVENLLRGAGKGSAES 314 (909)
Q Consensus 276 d~~IekLe~ei~eL~~q~d~aq~el~~L~~~~~~~~~~~ 314 (909)
+.-|+.|...+.+.....+.++.++.-|.+++.+.+...
T Consensus 21 E~tieeLn~~laEq~~~i~k~q~qlr~L~~kl~~~~~~~ 59 (72)
T COG2900 21 EQTIEELNDALAEQQLVIDKLQAQLRLLTEKLKDLQPSA 59 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 345667777777777777777777777777777776544
No 75
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=25.74 E-value=2.4e+02 Score=31.14 Aligned_cols=26 Identities=12% Similarity=0.207 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002546 277 LRIEKLEKEVDELTMQRDLARTEVEN 302 (909)
Q Consensus 277 ~~IekLe~ei~eL~~q~d~aq~el~~ 302 (909)
.+|+.|+.||.+|+-+++.++.++++
T Consensus 61 ~ql~~lq~ev~~LrG~~E~~~~~l~~ 86 (263)
T PRK10803 61 QQLSDNQSDIDSLRGQIQENQYQLNQ 86 (263)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 34444444444444444444444433
No 76
>PRK02793 phi X174 lysis protein; Provisional
Probab=25.51 E-value=3.5e+02 Score=24.39 Aligned_cols=33 Identities=21% Similarity=0.182 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 002546 278 RIEKLEKEVDELTMQRDLARTEVENLLRGAGKG 310 (909)
Q Consensus 278 ~IekLe~ei~eL~~q~d~aq~el~~L~~~~~~~ 310 (909)
.|+.|.+.+.+...+++.++.++..|.+.+.+.
T Consensus 23 tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~ 55 (72)
T PRK02793 23 TIEELNVTVTAHEMEMAKLRDHLRLLTEKLKAS 55 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344455555555555555555555555544443
No 77
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=25.50 E-value=3.3e+02 Score=27.75 Aligned_cols=18 Identities=33% Similarity=0.632 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHhcC
Q 002546 242 VKHLQRELSRLENELRGS 259 (909)
Q Consensus 242 ik~Lq~Ei~~Le~eLr~~ 259 (909)
+..|+.++..|+.++...
T Consensus 81 i~~L~~el~~l~~~~k~l 98 (169)
T PF07106_consen 81 IKELREELAELKKEVKSL 98 (169)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 556666666666655443
No 78
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=25.07 E-value=3.3e+02 Score=31.06 Aligned_cols=28 Identities=21% Similarity=0.384 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002546 280 EKLEKEVDELTMQRDLARTEVENLLRGA 307 (909)
Q Consensus 280 ekLe~ei~eL~~q~d~aq~el~~L~~~~ 307 (909)
..++..|++.+.+...++.+|+++.+..
T Consensus 235 ~~l~~~I~~~~~~k~e~~~~I~~ae~~~ 262 (312)
T smart00787 235 QELESKIEDLTNKKSELNTEIAEAEKKL 262 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444433
No 79
>PF07795 DUF1635: Protein of unknown function (DUF1635); InterPro: IPR012862 The members of this family include sequences that are parts of hypothetical proteins expressed by plant species. The region in question is about 170 amino acids long.
Probab=24.54 E-value=2.1e+02 Score=31.17 Aligned_cols=35 Identities=29% Similarity=0.440 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002546 271 VLREKDLRIEKLEKEVDELTMQRDLARTEVENLLR 305 (909)
Q Consensus 271 ~l~ekd~~IekLe~ei~eL~~q~d~aq~el~~L~~ 305 (909)
.++.++.+|..|.+-+..-.++||.|+.+++.|.-
T Consensus 27 ElRk~eeqi~~L~~Ll~~a~~ERDEAr~qlq~Ll~ 61 (214)
T PF07795_consen 27 ELRKREEQIAHLKDLLKKAYQERDEAREQLQKLLL 61 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566778888888888889999999999998873
No 80
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=24.03 E-value=2.1e+02 Score=36.15 Aligned_cols=21 Identities=24% Similarity=0.469 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHhcCC
Q 002546 240 ALVKHLQRELSRLENELRGSG 260 (909)
Q Consensus 240 ~lik~Lq~Ei~~Le~eLr~~~ 260 (909)
..+..|..++++|+.+|+...
T Consensus 418 ~a~~rLE~dvkkLraeLq~~R 438 (697)
T PF09726_consen 418 DAISRLEADVKKLRAELQSSR 438 (697)
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 455678888888888876654
No 81
>KOG4348 consensus Adaptor protein CMS/SETA [Signal transduction mechanisms]
Probab=23.73 E-value=3.3e+02 Score=32.67 Aligned_cols=60 Identities=20% Similarity=0.288 Sum_probs=42.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHhcCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 002546 237 SDKALVKHLQRELSRLENELRGSGPVFITPDSVSVLREKDLRIEKLEKEVDELTMQRDLARTEVENLLRGAG 308 (909)
Q Consensus 237 s~k~lik~Lq~Ei~~Le~eLr~~~~~~~~~d~~~~l~ekd~~IekLe~ei~eL~~q~d~aq~el~~L~~~~~ 308 (909)
..+..+..|+.+|..|..-+. ++-+....+|++|.+++.+-+.-|..++-++++|.+++.
T Consensus 566 ~~k~s~delr~qi~el~~ive------------~lk~~~~kel~kl~~dleeek~mr~~lemei~~lkka~~ 625 (627)
T KOG4348|consen 566 VKKNSLDELRAQIIELLCIVE------------ALKKDHGKELEKLRKDLEEEKTMRSNLEMEIEKLKKAVL 625 (627)
T ss_pred hhhhhHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHhh
Confidence 334567777777776654221 222344567888999999988889999999999888753
No 82
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.26 E-value=3e+02 Score=32.72 Aligned_cols=29 Identities=24% Similarity=0.402 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 002546 281 KLEKEVDELTMQRDLARTEVENLLRGAGK 309 (909)
Q Consensus 281 kLe~ei~eL~~q~d~aq~el~~L~~~~~~ 309 (909)
-|+++|.+|++.+-.+...|+.|.+...+
T Consensus 159 pmekeI~elk~kl~~aE~~i~El~k~~~h 187 (542)
T KOG0993|consen 159 PMEKEINELKKKLAKAEQRIDELSKAKHH 187 (542)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHhhhcc
Confidence 48999999999999999999999866544
No 83
>PRK09343 prefoldin subunit beta; Provisional
Probab=23.12 E-value=3.7e+02 Score=26.35 Aligned_cols=32 Identities=22% Similarity=0.260 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 002546 277 LRIEKLEKEVDELTMQRDLARTEVENLLRGAG 308 (909)
Q Consensus 277 ~~IekLe~ei~eL~~q~d~aq~el~~L~~~~~ 308 (909)
.+|..++++...|+.+...++..++.+++..+
T Consensus 85 ~~ik~lekq~~~l~~~l~e~q~~l~~ll~~~~ 116 (121)
T PRK09343 85 LRSRTLEKQEKKLREKLKELQAKINEMLSKYY 116 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34444555555555555555555555554433
No 84
>PRK00846 hypothetical protein; Provisional
Probab=23.08 E-value=5.6e+02 Score=23.74 Aligned_cols=31 Identities=16% Similarity=0.318 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 002546 279 IEKLEKEVDELTMQRDLARTEVENLLRGAGK 309 (909)
Q Consensus 279 IekLe~ei~eL~~q~d~aq~el~~L~~~~~~ 309 (909)
|+.|.+.+.+...+++.++.++..|...+.+
T Consensus 29 Ie~LN~~v~~qq~~I~~L~~ql~~L~~rL~~ 59 (77)
T PRK00846 29 LTELSEALADARLTGARNAELIRHLLEDLGK 59 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444433
No 85
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=23.05 E-value=4.3e+02 Score=23.98 Aligned_cols=29 Identities=24% Similarity=0.357 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002546 277 LRIEKLEKEVDELTMQRDLARTEVENLLR 305 (909)
Q Consensus 277 ~~IekLe~ei~eL~~q~d~aq~el~~L~~ 305 (909)
.+++.|+++...|..+++.++.+.+.|..
T Consensus 25 ~e~eeLke~n~~L~~e~~~L~~en~~L~~ 53 (72)
T PF06005_consen 25 MENEELKEKNNELKEENEELKEENEQLKQ 53 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555555443
No 86
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=22.96 E-value=2.5e+02 Score=33.42 Aligned_cols=21 Identities=19% Similarity=0.365 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 002546 273 REKDLRIEKLEKEVDELTMQR 293 (909)
Q Consensus 273 ~ekd~~IekLe~ei~eL~~q~ 293 (909)
.+.+..|..++..+..|..|.
T Consensus 90 ~~~~~~I~~~~~~l~~l~~q~ 110 (420)
T COG4942 90 KKLRKQIADLNARLNALEVQE 110 (420)
T ss_pred HHHHhhHHHHHHHHHHHHHHH
Confidence 334444555555555554444
No 87
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=22.94 E-value=4.7e+02 Score=24.38 Aligned_cols=29 Identities=24% Similarity=0.079 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002546 271 VLREKDLRIEKLEKEVDELTMQRDLARTE 299 (909)
Q Consensus 271 ~l~ekd~~IekLe~ei~eL~~q~d~aq~e 299 (909)
..++.=.+|..+|.+|..|+.+...+..+
T Consensus 55 ~~keLL~EIA~lE~eV~~LE~~v~~L~~~ 83 (88)
T PF14389_consen 55 KAKELLEEIALLEAEVAKLEQKVLSLYRQ 83 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455666777777776666655443
No 88
>PRK09039 hypothetical protein; Validated
Probab=22.94 E-value=3.1e+02 Score=31.52 Aligned_cols=18 Identities=28% Similarity=0.455 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 002546 240 ALVKHLQRELSRLENELR 257 (909)
Q Consensus 240 ~lik~Lq~Ei~~Le~eLr 257 (909)
..+..|+.+|+.|+.+|.
T Consensus 137 ~~V~~L~~qI~aLr~Qla 154 (343)
T PRK09039 137 AQVELLNQQIAALRRQLA 154 (343)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345666666666666654
No 89
>smart00338 BRLZ basic region leucin zipper.
Probab=22.63 E-value=3.1e+02 Score=23.63 Aligned_cols=28 Identities=32% Similarity=0.452 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002546 277 LRIEKLEKEVDELTMQRDLARTEVENLL 304 (909)
Q Consensus 277 ~~IekLe~ei~eL~~q~d~aq~el~~L~ 304 (909)
.++..|+.++.+|..+.+.++.++..|.
T Consensus 33 ~~~~~L~~en~~L~~~~~~l~~e~~~lk 60 (65)
T smart00338 33 RKVEQLEAENERLKKEIERLRRELEKLK 60 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444443
No 90
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=22.54 E-value=3.8e+02 Score=29.37 Aligned_cols=49 Identities=20% Similarity=0.312 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002546 240 ALVKHLQRELSRLENELRGSGPVFITPDSVSVLREKDLRIEKLEKEVDELTMQRDLAR 297 (909)
Q Consensus 240 ~lik~Lq~Ei~~Le~eLr~~~~~~~~~d~~~~l~ekd~~IekLe~ei~eL~~q~d~aq 297 (909)
..+.+|++|...|..|-... ...|+.....|..|+..|.+++.++...+
T Consensus 32 ~~L~e~~kE~~~L~~Er~~h---------~eeLrqI~~DIn~lE~iIkqa~~er~~~~ 80 (230)
T PF10146_consen 32 KCLEEYRKEMEELLQERMAH---------VEELRQINQDINTLENIIKQAESERNKRQ 80 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777777776654321 33344444445555555555544444333
No 91
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=21.93 E-value=3.9e+02 Score=26.68 Aligned_cols=41 Identities=24% Similarity=0.289 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 002546 270 SVLREKDLRIEKLEKEVDELTMQRDLARTEVENLLRGAGKG 310 (909)
Q Consensus 270 ~~l~ekd~~IekLe~ei~eL~~q~d~aq~el~~L~~~~~~~ 310 (909)
....+.+.+++.|+..+.-|..|-+.++.+++.|...+.+.
T Consensus 70 ~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~ 110 (119)
T COG1382 70 EAVDELEERKETLELRIKTLEKQEEKLQERLEELQSEIQKA 110 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666777777778888777777777777777666553
No 92
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=21.78 E-value=2.8e+02 Score=33.27 Aligned_cols=64 Identities=14% Similarity=0.220 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 002546 242 VKHLQRELSRLENELRGSGPVFITPDSVSVLREKDLRIEKLEKEVDELTMQRDLARTEVENLLRGAGKG 310 (909)
Q Consensus 242 ik~Lq~Ei~~Le~eLr~~~~~~~~~d~~~~l~ekd~~IekLe~ei~eL~~q~d~aq~el~~L~~~~~~~ 310 (909)
..+++..+.++.+||.... .....+.+.++.-+.++++....++..+...+.++++|+.++.|.
T Consensus 384 ~~q~q~k~~k~~kel~~~~-----E~n~~l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQlrDl 447 (493)
T KOG0804|consen 384 LQQLQTKLKKCQKELKEER-----EENKKLIKNQDVWRGKLKELEEREKEALGSKDEKITDLQEQLRDL 447 (493)
T ss_pred HHHHHHHHHHHHHHHHHHH-----HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3445555555555554321 011222333444455566666666666666667777777776664
No 93
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=21.70 E-value=3.6e+02 Score=33.32 Aligned_cols=55 Identities=22% Similarity=0.313 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002546 242 VKHLQRELSRLENELRGSGPVFITPDSVSVLREKDLRIEKLEKEVDELTMQRDLARTEVEN 302 (909)
Q Consensus 242 ik~Lq~Ei~~Le~eLr~~~~~~~~~d~~~~l~ekd~~IekLe~ei~eL~~q~d~aq~el~~ 302 (909)
++.++.++..|+..+...+-. .+.+...+.+.++|++++..+..++|.+++++.+
T Consensus 310 ~e~lq~~~d~Lk~~Ie~Q~iS------~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~ 364 (581)
T KOG0995|consen 310 IEKLQKENDELKKQIELQGIS------GEDVERMNLERNKLKRELNKIQSELDRLSKEVWE 364 (581)
T ss_pred HHHHHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455666666666666655322 2233334444455555555555555555444443
No 94
>PF07794 DUF1633: Protein of unknown function (DUF1633); InterPro: IPR012436 This family contains sequences derived from a group of hypothetical proteins expressed by Arabidopsis thaliana (Mouse-ear cress). These sequences are highly similar and the region concerned is about 100 residues long.
Probab=21.37 E-value=73 Score=38.22 Aligned_cols=79 Identities=18% Similarity=0.192 Sum_probs=48.0
Q ss_pred chhHHHhHhhcCCCcccceEeecCCCCCChHHHHHHHHHHHHHhc-ccccceeccccCHHHHHHHHHHHHHHHHHHHhcC
Q 002546 181 SKLTRILQSSLGGNARTAIICTLSPARSHVEQSRNTLLFASCAKE-VTTNAQVNIVMSDKALVKHLQRELSRLENELRGS 259 (909)
Q Consensus 181 SKLTrLLqdSLGGNsrT~mIatVSPs~~~~eETLsTLrFAsRAK~-Ikn~p~vN~~~s~k~lik~Lq~Ei~~Le~eLr~~ 259 (909)
.-|..||...=|-||++--+||..-......-+-+-|.|+.++.. .....++...-.-.-....+..-+.+|+-||...
T Consensus 509 A~~~nLl~h~k~R~~qvpg~~~~a~~~~~~~~sa~EleeGk~lireltssvk~g~drEV~~~A~~~~~~~eRLkmElst~ 588 (790)
T PF07794_consen 509 AGLANLLRHIKGRNCQVPGVCNYAQAACYADMSAKELEEGKTLIRELTSSVKAGQDREVSFQAEGIVPGIERLKMELSTS 588 (790)
T ss_pred hHHHHHHHHHhcccccCCchhhHHhhhhhcccchhhhhhhHHHHHhhcccccCCccceeecccccccchhhhhheeeccc
Confidence 357789998889999988887776666666667778888877644 3333333221111111122223377777777654
No 95
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.22 E-value=5.8e+02 Score=28.45 Aligned_cols=81 Identities=22% Similarity=0.247 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHhcccccceeccccCHHHHHHHHHHHHHHHHHHHhcCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHH
Q 002546 211 EQSRNTLLFASCAKEVTTNAQVNIVMSDKALVKHLQRELSRLENELRGSGPVFITPDSVSVLREKDLRIEKLEKEVDELT 290 (909)
Q Consensus 211 eETLsTLrFAsRAK~Ikn~p~vN~~~s~k~lik~Lq~Ei~~Le~eLr~~~~~~~~~d~~~~l~ekd~~IekLe~ei~eL~ 290 (909)
.=++.++.++-....+...-+.-.....+.+ .|.+++..+++++. ....+++.+++.+...+
T Consensus 23 s~~~~~~l~~~~~a~~~q~~k~~~~~~~r~~--~L~~e~~s~Q~~~~----------------~L~~ev~~~~~~~~s~~ 84 (247)
T COG3879 23 SISLAMLLAGVMLAAVFQTSKGESVRRARDL--DLVKELRSLQKKVN----------------TLAAEVEDLENKLDSVR 84 (247)
T ss_pred HHHHHHHHHHHHHHHHHhhccCcchhhhhhh--HHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHH
Confidence 3456666666555555544444333333322 45555555554432 23345556666666555
Q ss_pred HH----HHHHHHHHHHHHHHhcC
Q 002546 291 MQ----RDLARTEVENLLRGAGK 309 (909)
Q Consensus 291 ~q----~d~aq~el~~L~~~~~~ 309 (909)
.. ...++.+++.|...+|-
T Consensus 85 ~~~~t~~~~ie~~l~~l~~~aG~ 107 (247)
T COG3879 85 RSVLTDDAALEDRLEKLRMLAGS 107 (247)
T ss_pred HhHHhHHHHHHHHHHHHHHHhcc
Confidence 22 22233345555555544
No 96
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=21.16 E-value=3.6e+02 Score=23.21 Aligned_cols=28 Identities=36% Similarity=0.560 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002546 278 RIEKLEKEVDELTMQRDLARTEVENLLR 305 (909)
Q Consensus 278 ~IekLe~ei~eL~~q~d~aq~el~~L~~ 305 (909)
.++.|+..+..|..+++.+..++..|..
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~L~~ 54 (64)
T PF00170_consen 27 YIEELEEKVEELESENEELKKELEQLKK 54 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444433
No 97
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=21.08 E-value=2.5e+02 Score=24.52 Aligned_cols=19 Identities=37% Similarity=0.660 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q 002546 240 ALVKHLQRELSRLENELRG 258 (909)
Q Consensus 240 ~lik~Lq~Ei~~Le~eLr~ 258 (909)
+.+..|+++++.++.++..
T Consensus 4 ~E~~rL~Kel~kl~~~i~~ 22 (66)
T PF10458_consen 4 AEIERLEKELEKLEKEIER 22 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455555565555555533
No 98
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=21.07 E-value=2.5e+02 Score=24.13 Aligned_cols=36 Identities=25% Similarity=0.414 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002546 271 VLREKDLRIEKLEKEVDELTMQRDLARTEVENLLRG 306 (909)
Q Consensus 271 ~l~ekd~~IekLe~ei~eL~~q~d~aq~el~~L~~~ 306 (909)
.+.+...++..|+.++..|..+++.++.++..|...
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e 62 (64)
T PF00170_consen 27 YIEELEEKVEELESENEELKKELEQLKKEIQSLKSE 62 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344555667778888888888888888887777654
No 99
>smart00338 BRLZ basic region leucin zipper.
Probab=20.97 E-value=2.2e+02 Score=24.48 Aligned_cols=35 Identities=34% Similarity=0.532 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 002546 275 KDLRIEKLEKEVDELTMQRDLARTEVENLLRGAGK 309 (909)
Q Consensus 275 kd~~IekLe~ei~eL~~q~d~aq~el~~L~~~~~~ 309 (909)
+...+..|+.++..|..+++.++.++..|...+..
T Consensus 24 Kk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~ 58 (65)
T smart00338 24 KKAEIEELERKVEQLEAENERLKKEIERLRRELEK 58 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567888899999999999888888888776653
No 100
>PRK00295 hypothetical protein; Provisional
Probab=20.91 E-value=4.3e+02 Score=23.55 Aligned_cols=37 Identities=14% Similarity=0.118 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 002546 275 KDLRIEKLEKEVDELTMQRDLARTEVENLLRGAGKGS 311 (909)
Q Consensus 275 kd~~IekLe~ei~eL~~q~d~aq~el~~L~~~~~~~~ 311 (909)
.+..|+.|.+.+.+...+++.++.++..|.+.+.+..
T Consensus 17 qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 17 QDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3556888888888888889999988888877776654
No 101
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=20.84 E-value=1.8e+02 Score=35.07 Aligned_cols=18 Identities=39% Similarity=0.416 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 002546 276 DLRIEKLEKEVDELTMQR 293 (909)
Q Consensus 276 d~~IekLe~ei~eL~~q~ 293 (909)
+.+|++|+.++..|+.|.
T Consensus 103 e~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 103 QRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444443
No 102
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=20.60 E-value=2.5e+02 Score=34.80 Aligned_cols=33 Identities=21% Similarity=0.269 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002546 275 KDLRIEKLEKEVDELTMQRDLARTEVENLLRGA 307 (909)
Q Consensus 275 kd~~IekLe~ei~eL~~q~d~aq~el~~L~~~~ 307 (909)
.+.++.+++.++..+..++..++.+++.+.+.+
T Consensus 433 l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 465 (650)
T TIGR03185 433 AQNELFRSEAEIEELLRQLETLKEAIEALRKTL 465 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555554444444
No 103
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=20.32 E-value=2.5e+02 Score=25.40 Aligned_cols=59 Identities=17% Similarity=0.169 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 002546 242 VKHLQRELSRLENELRGSGPVFITPDSVSVLREKDLRIEKLEKEVDELTMQRDLARTEVENLLRGAGK 309 (909)
Q Consensus 242 ik~Lq~Ei~~Le~eLr~~~~~~~~~d~~~~l~ekd~~IekLe~ei~eL~~q~d~aq~el~~L~~~~~~ 309 (909)
++.--.+|+.|..+-... ....-.....|.+|...+.++..++..+..+++.+...+..
T Consensus 7 l~EKDe~Ia~L~eEGekL---------Sk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~ 65 (74)
T PF12329_consen 7 LAEKDEQIAQLMEEGEKL---------SKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELES 65 (74)
T ss_pred HHhHHHHHHHHHHHHHHH---------HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445566666554332 11122334567777777777777777777777776666544
No 104
>PRK00736 hypothetical protein; Provisional
Probab=20.23 E-value=4.8e+02 Score=23.24 Aligned_cols=24 Identities=13% Similarity=0.134 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 002546 277 LRIEKLEKEVDELTMQRDLARTEV 300 (909)
Q Consensus 277 ~~IekLe~ei~eL~~q~d~aq~el 300 (909)
..+.+..++|..|+.++..+..++
T Consensus 26 ~~v~~Qq~~i~~L~~ql~~L~~rl 49 (68)
T PRK00736 26 DQLAEQWKTVEQMRKKLDALTERF 49 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444443333
No 105
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=20.18 E-value=4.1e+02 Score=25.02 Aligned_cols=54 Identities=24% Similarity=0.285 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002546 239 KALVKHLQRELSRLENELRGSGPVFITPDSVSVLREKDLRIEKLEKEVDELTMQRDLARTEVENLLR 305 (909)
Q Consensus 239 k~lik~Lq~Ei~~Le~eLr~~~~~~~~~d~~~~l~ekd~~IekLe~ei~eL~~q~d~aq~el~~L~~ 305 (909)
...+.+++..+...+..|+..... .+.-+.+++|...++.+.+....++..|.+
T Consensus 11 Eekl~~cr~~le~ve~rL~~~eLs-------------~e~R~~lE~E~~~l~~~l~~~E~eL~~Lrk 64 (85)
T PF15188_consen 11 EEKLAQCRRRLEAVESRLRRRELS-------------PEARRSLEKELNELKEKLENNEKELKLLRK 64 (85)
T ss_pred HHHHHHHHHHHHHHHHHHcccCCC-------------hHHHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 345667777777777777765432 112244667777777777777777766655
No 106
>PRK00736 hypothetical protein; Provisional
Probab=20.04 E-value=6.3e+02 Score=22.52 Aligned_cols=37 Identities=16% Similarity=0.143 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 002546 275 KDLRIEKLEKEVDELTMQRDLARTEVENLLRGAGKGS 311 (909)
Q Consensus 275 kd~~IekLe~ei~eL~~q~d~aq~el~~L~~~~~~~~ 311 (909)
.+..|+.|.+.+.+...+++.++.++..|.+.+.+..
T Consensus 17 qe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00736 17 QEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSLE 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3456788888888888888888888888877776544
No 107
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=20.03 E-value=4.4e+02 Score=25.89 Aligned_cols=29 Identities=24% Similarity=0.357 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002546 275 KDLRIEKLEKEVDELTMQRDLARTEVENL 303 (909)
Q Consensus 275 kd~~IekLe~ei~eL~~q~d~aq~el~~L 303 (909)
...++..|.+|+..|+.+++.++.++..+
T Consensus 27 LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 27 LKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33455666677777777777777666654
Done!