BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002547
(909 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1PS3|A Chain A, Golgi Alpha-mannosidase Ii In Complex With Kifunensine
Length = 1045
Score = 487 bits (1254), Expect = e-137, Method: Compositional matrix adjust.
Identities = 301/757 (39%), Positives = 428/757 (56%), Gaps = 70/757 (9%)
Query: 2 EGNMWLNDTIGFIPKNSWAIDPFGYSATMAYLLRRMGFENMLIQRTHYELKKELALHQNL 61
EG WL + P SWAIDPFG+S TM Y+L++ GF+NMLIQRTHY +KKELA + L
Sbjct: 184 EGQTWLKQFMNVTPTASWAIDPFGHSPTMPYILQKSGFKNMLIQRTHYSVKKELAQQRQL 243
Query: 62 EYIWRQSWDTEETSDIFVHMMPFYSYDIPHTCGPEPAVCCQFDFARMGGFFYEACPWRQN 121
E++WRQ WD + + +F HMMPFYSYDIPHTCGP+P VCCQFDF RMG F +CPW+
Sbjct: 244 EFLWRQIWDNKGDTALFTHMMPFYSYDIPHTCGPDPKVCCQFDFKRMGSFGL-SCPWKVP 302
Query: 122 PVETNQENVQERALKLLDQYKKKSTLYRTNTLLVPLGDDFRYTTINEAEAQFRNYQLLFD 181
P + +NV R+ L+DQ+KKK+ LYRTN LL+PLGDDFR+ E + Q NY+ LF+
Sbjct: 303 PRTISDQNVAARSDLLVDQWKKKAELYRTNVLLIPLGDDFRFKQNTEWDVQRVNYERLFE 362
Query: 182 YINSNPSLNAEAKFGTLDDYFRTLREEADRINYSRPGEIGSGQVEGFPSLSGDFFTYADR 241
+INS N +A+FGTL +YF + +A+R +GQ E FP+LSGDFFTYADR
Sbjct: 363 HINSQAHFNVQAQFGTLQEYFDAV-HQAER----------AGQAE-FPTLSGDFFTYADR 410
Query: 242 QQDYWSGYYVSRPFFKAVDRVLEQTLRATEMMVALLLGYCQRAQCEKLPMSFAYKLTAAR 301
+YWSGYY SRP+ K +DRVL +RA EM+ A + A+ E+ +L AR
Sbjct: 411 SDNYWSGYYTSRPYHKRMDRVLMHYVRAAEMLSA-WHSWDGMARIEE-------RLEQAR 462
Query: 302 RNLALFQHHDGVTGTAKDHVVLDYGTRMHTSLQDLQIFMSKAIEVLLGIRERY--DQNLS 359
R L+LFQHHDG+TGTAK HVV+DY RM +L+ Q+ M +++ LL Y D + S
Sbjct: 463 RELSLFQHHDGITGTAKTHVVVDYEQRMQEALKACQMVMQQSVYRLLTKPSIYSPDFSFS 522
Query: 360 QFEPEQVR---SKYDAQPVHKVINVHEGTSQSVVIFNPLEQTREEIVMVIVNRPDITVLD 416
F + R S + ++ S+ VV+ N L RE++V V+ P ++V D
Sbjct: 523 YFTLDDSRWPGSGVEDSRTTIILGEDILPSKHVVMHNTLPHWREQLVDFYVSSPFVSVTD 582
Query: 417 SNWTCVQSQISPELRHGKSKIF--------TGRHRLHWKATIPALGLQVYYIANGFVGCD 468
V++Q+SP + T ++R+ +KA +P +GL Y +
Sbjct: 583 LANNPVEAQVSPVWSWHHDTLTKTIHPQGSTTKYRIIFKARVPPMGLATYVLT-----IS 637
Query: 469 KAKPVKLKYSSD-----NSFSCPTPYACSKIE-GDVADIRNR---HQILSFDVRHGLLQK 519
+KP Y+S+ N S P ++ GD +I R L+F GLL+
Sbjct: 638 DSKPEHTSYASNLLLRKNPTSLPLGQYPEDVKFGDPREISLRVGNGPTLAFS-EQGLLKS 696
Query: 520 ISHINGSQNV-VEEEIDMYS--SQG--SGAYLFMPNGDAHPITEAGGLMVISKGPLMEEA 574
I S +V V + Y S G SGAYLF+PNG A P+ +++++KG L E +
Sbjct: 697 IQLTQDSPHVPVHFKFLKYGVRSHGDRSGAYLFLPNGPASPVELGQPVVLVTKGKL-ESS 755
Query: 575 YSYPRTAWERSPISHSTRLYNGNNMIQEFLIEKEYHVELLSHNFNDRELIVRYKTDIDNK 634
S + + H T + G I+ V++ S ++ E+++R +T ID+
Sbjct: 756 VSVGLPS-----VVHQTIMRGGAPEIRNL-------VDIGS--LDNTEIVMRLETHIDSG 801
Query: 635 RIFYSDLNGFQMSRRETYDKIPLQGNYYPMPALAFMQGSNGQRFSVHSRQSLGVASLKDG 694
IFY+DLNG Q +R DK+PLQ NYYP+P+ F++ +N R ++ + Q LG +SL G
Sbjct: 802 DIFYTDLNGLQFIKRRRLDKLPLQANYYPIPSGMFIEDAN-TRLTLLTGQPLGGSSLASG 860
Query: 695 WLEIMXXXXXXXXXXXXXXQGVLDNRAMNVVFHILVE 731
LEIM QGVLDN+ + ++ +++E
Sbjct: 861 ELEIMQDRRLASDDERGLGQGVLDNKPVLHIYRLVLE 897
>pdb|3DX3|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With Mannostatin
Analog (1r,2r,
3s,4r,5r)-5-Aminocyclopentane-1,2,3,4-Tetraol
Length = 1045
Score = 487 bits (1253), Expect = e-137, Method: Compositional matrix adjust.
Identities = 301/757 (39%), Positives = 428/757 (56%), Gaps = 70/757 (9%)
Query: 2 EGNMWLNDTIGFIPKNSWAIDPFGYSATMAYLLRRMGFENMLIQRTHYELKKELALHQNL 61
EG WL + P SWAIDPFG+S TM Y+L++ GF+NMLIQRTHY +KKELA + L
Sbjct: 184 EGQTWLKQFMNVTPTASWAIDPFGHSPTMPYILQKSGFKNMLIQRTHYSVKKELAQQRQL 243
Query: 62 EYIWRQSWDTEETSDIFVHMMPFYSYDIPHTCGPEPAVCCQFDFARMGGFFYEACPWRQN 121
E++WRQ WD + + +F HMMPFYSYDIPHTCGP+P VCCQFDF RMG F +CPW+
Sbjct: 244 EFLWRQIWDNKGDTALFTHMMPFYSYDIPHTCGPDPKVCCQFDFKRMGSFGL-SCPWKVP 302
Query: 122 PVETNQENVQERALKLLDQYKKKSTLYRTNTLLVPLGDDFRYTTINEAEAQFRNYQLLFD 181
P + +NV R+ L+DQ+KKK+ LYRTN LL+PLGDDFR+ E + Q NY+ LF+
Sbjct: 303 PRTISDQNVAARSDLLVDQWKKKAELYRTNVLLIPLGDDFRFKQNTEWDVQRVNYERLFE 362
Query: 182 YINSNPSLNAEAKFGTLDDYFRTLREEADRINYSRPGEIGSGQVEGFPSLSGDFFTYADR 241
+INS N +A+FGTL +YF + +A+R +GQ E FP+LSGDFFTYADR
Sbjct: 363 HINSQAHFNVQAQFGTLQEYFDAV-HQAER----------AGQAE-FPTLSGDFFTYADR 410
Query: 242 QQDYWSGYYVSRPFFKAVDRVLEQTLRATEMMVALLLGYCQRAQCEKLPMSFAYKLTAAR 301
+YWSGYY SRP+ K +DRVL +RA EM+ A + A+ E+ +L AR
Sbjct: 411 SDNYWSGYYTSRPYHKRMDRVLMHYVRAAEMLSA-WHSWDGMARIEE-------RLEQAR 462
Query: 302 RNLALFQHHDGVTGTAKDHVVLDYGTRMHTSLQDLQIFMSKAIEVLLGIRERY--DQNLS 359
R L+LFQHHDG+TGTAK HVV+DY RM +L+ Q+ M +++ LL Y D + S
Sbjct: 463 RELSLFQHHDGITGTAKTHVVVDYEQRMQEALKACQMVMQQSVYRLLTKPSIYSPDFSFS 522
Query: 360 QFEPEQVR---SKYDAQPVHKVINVHEGTSQSVVIFNPLEQTREEIVMVIVNRPDITVLD 416
F + R S + ++ S+ VV+ N L RE++V V+ P ++V D
Sbjct: 523 YFTLDDSRWPGSGVEDSRTTIILGEDILPSKHVVMHNTLPHWREQLVDFYVSSPFVSVTD 582
Query: 417 SNWTCVQSQISPELRHGKSKIF--------TGRHRLHWKATIPALGLQVYYIANGFVGCD 468
V++Q+SP + T ++R+ +KA +P +GL Y +
Sbjct: 583 LANNPVEAQVSPVWSWHHDTLTKTIHPQGSTTKYRIIFKARVPPMGLATYVLT-----IS 637
Query: 469 KAKPVKLKYSSD-----NSFSCPTPYACSKIE-GDVADIRNR---HQILSFDVRHGLLQK 519
+KP Y+S+ N S P ++ GD +I R L+F GLL+
Sbjct: 638 DSKPEHTSYASNLLLRKNPTSLPLGQYPEDVKFGDPREISLRVGNGPTLAFS-EQGLLKS 696
Query: 520 ISHINGSQNV-VEEEIDMYS--SQG--SGAYLFMPNGDAHPITEAGGLMVISKGPLMEEA 574
I S +V V + Y S G SGAYLF+PNG A P+ +++++KG L E +
Sbjct: 697 IQLTQDSPHVPVHFKFLKYGVRSHGDRSGAYLFLPNGPASPVELGQPVVLVTKGKL-ESS 755
Query: 575 YSYPRTAWERSPISHSTRLYNGNNMIQEFLIEKEYHVELLSHNFNDRELIVRYKTDIDNK 634
S + + H T + G I+ V++ S ++ E+++R +T ID+
Sbjct: 756 VSVGLPS-----VVHQTIMRGGAPEIRNL-------VDIGS--LDNTEIVMRLETHIDSG 801
Query: 635 RIFYSDLNGFQMSRRETYDKIPLQGNYYPMPALAFMQGSNGQRFSVHSRQSLGVASLKDG 694
IFY+DLNG Q +R DK+PLQ NYYP+P+ F++ +N R ++ + Q LG +SL G
Sbjct: 802 DIFYTDLNGLQFIKRRRLDKLPLQANYYPIPSGMFIEDAN-TRLTLLTGQPLGGSSLASG 860
Query: 695 WLEIMXXXXXXXXXXXXXXQGVLDNRAMNVVFHILVE 731
LEIM QGVLDN+ + ++ +++E
Sbjct: 861 ELEIMQDRRLASDDERGLGQGVLDNKPVLHIYRLVLE 897
>pdb|1QWN|A Chain A, Golgi Alpha-Mannosidase Ii Covalent Intermediate Complex
With 5- Fluoro-Gulosyl-Fluoride
pdb|1R33|A Chain A, Golgi Alpha-Mannosidase Ii Complex With
5-Thio-D-Mannopyranosylamine
pdb|1R34|A Chain A, Golgi Alpha-Mannosidase Ii Complex With 5-Thio-D-
Mannopyranosylamidinium Salt
pdb|1TQS|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With Salacinol
pdb|1TQT|A Chain A, Golgi Alpha-mannosidase Ii In Complex With A Diastereomer
Of Salacinol
pdb|1TQU|A Chain A, Golgi Alpha-mannosidase Ii In Complex With The Salacinol
Analog Ghavamiol
pdb|1TQV|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With
Seleno-Salacinol (Blintol)
pdb|1TQW|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With A Diastereomer
Of Seleno- Salacinol
pdb|2ALW|A Chain A, Golgi Alpha-Mannosidase Ii Complex With Noeuromycin
pdb|2F7O|A Chain A, Golgi Alpha-mannosidase Ii Complex With Mannostatin A
pdb|2F7P|A Chain A, Golgi Alpha-Mannosidase Ii Complex With Benzyl-Mannostatin
A
pdb|2F18|A Chain A, Golgi Alpha-Mannosidase Ii Complex With
(2r,3r,4s)-2-({[(1r)-2-
Hydroxy-1-Phenylethyl]amino}methyl)pyrrolidine-3,4-Diol
pdb|2F1A|A Chain A, Golgi Alpha-Mannosidase Ii Complex With
(2r,3r,4s)-2-({[(1s)-2-
Hydroxy-1-Phenylethyl]amino}methyl)pyrrolidine-3,4-Diol
pdb|2F1B|A Chain A, Golgi Alpha-Mannosidase Ii Complex With
(2r,3r,4s,5r)-2-({[(1r)-2-
Hydroxy-1-Phenylethyl]amino}methyl)-5-Methylpyrrolidine-
3,4-Diol
pdb|2F7Q|A Chain A, Golgi Alpha-Mannosidase Ii Complex With
Aminocyclopentitetrol
pdb|2F7R|A Chain A, Golgi Alpha-Mannosidase Ii Complex With
Benzyl-Aminocyclopentitetrol
pdb|2FYV|A Chain A, Golgi Alpha-Mannosidase Ii Complex With An Amino-Salacinol
Carboxylate Analog
pdb|2OW6|A Chain A, Golgi Alpha-Mannosidase Ii Complex With
(1r,5s,6s,7r,8s)-1-
Thioniabicyclo[4.3.0]nonan-5,7,8-Triol Chloride
pdb|2OW7|A Chain A, Golgi Alpha-Mannosidase Ii Complex With (1r,6s,7r,8s)-1-
Thioniabicyclo[4.3.0]nonan-7,8-Diol Chloride
pdb|3BLB|A Chain A, Crystal Structure Of Golgi Mannosidase Ii In Complex With
Swainsonine At 1.3 Angstrom Resolution
pdb|3BUB|A Chain A, Golgi Alpha-mannosidase Ii With An Empty Active Site
pdb|3DDF|A Chain A, Golgi Mannosidase Ii Complex With
(3r,4r,5r)-3,4-Dihydroxy-5-({[(1r)- 2-Hydroxy-1
Phenylethyl]amino}methyl) Pyrrolidin-2-One
pdb|3DDG|A Chain A, Golgi Mannosidase Ii Complex With
(3r,4r,5r)-3,4-Dihydroxy-5-({[(1r)- 2-Hydroxy-1
Phenylethyl]amino}methyl) Methylpyrrolidin-2-One
pdb|3D4Y|A Chain A, Golgi Mannosidase Ii Complex With Mannoimidazole
pdb|3D4Z|A Chain A, Golgi Mannosidase Ii Complex With Gluco-Imidazole
pdb|3D50|A Chain A, Golgi Mannosidase Ii Complex With
N-Octyl-6-Epi-Valienamine
pdb|3D51|A Chain A, Golgi Mannosidase Ii Complex With Gluco-Hydroxyiminolactam
pdb|3D52|A Chain A, Golgi Mannosidase Ii Complex With An N-Aryl Carbamate
Derivative Of Gluco-Hydroxyiminolactam
pdb|3DX0|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With Mannostatin A
At Ph 5.75
pdb|3DX1|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With Mannostatin
Analog (1s,2s, 3r,4r)-4-Aminocyclopentane-1,2,3-Triol
pdb|3DX2|A Chain A, Golgi Mannosidase Ii Complex With Mannostatin B
pdb|3DX4|A Chain A, Golgi Alpha-mannosidase Ii In Complex With Mannostatin
Analog (1r,2r,
3r,4s,5r)-4-amino-5-methoxycyclopentane-1,2,3-triol
pdb|3EJP|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With 5-Substituted
Swainsonine Analog:
(5r)-5-[2'-Oxo-2'-(Phenyl)ethyl]-Swainsonine
pdb|3EJQ|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With 5-Substitued
Swainsonine Analog:
(5r)-5-[2'-Oxo-2'-(4-Methylphenyl)ethyl]-Swainsonine
pdb|3EJR|A Chain A, Golgi Alpha-mannosidase Ii In Complex With 5-substitued
Swainsonine Analog:
(5r)-5-[2'-oxo-2'-(4-tert-butylphenyl)ethyl]-swainsonine
pdb|3EJS|A Chain A, Golgi Alpha-mannosidase Ii In Complex With 5-substituted
Swainsonine Analog:
(5s)-5-[2'-(4-tert-butylphenyl)ethyl]-swainsonine
pdb|3EJT|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With 5-Substituted
Swainsonine
Analog:(5r)-5-[2'-(4-Tert-Butylphenyl)ethyl]-Swainsonine
pdb|3EJU|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With 5-Substituted
Swainsonine
Analog:(5s)-5-[2'-Oxo-2'-(4-Tert-Butylphenyl)ethyl]-
Swainsonine
Length = 1045
Score = 487 bits (1253), Expect = e-137, Method: Compositional matrix adjust.
Identities = 301/757 (39%), Positives = 428/757 (56%), Gaps = 70/757 (9%)
Query: 2 EGNMWLNDTIGFIPKNSWAIDPFGYSATMAYLLRRMGFENMLIQRTHYELKKELALHQNL 61
EG WL + P SWAIDPFG+S TM Y+L++ GF+NMLIQRTHY +KKELA + L
Sbjct: 184 EGQTWLKQFMNVTPTASWAIDPFGHSPTMPYILQKSGFKNMLIQRTHYSVKKELAQQRQL 243
Query: 62 EYIWRQSWDTEETSDIFVHMMPFYSYDIPHTCGPEPAVCCQFDFARMGGFFYEACPWRQN 121
E++WRQ WD + + +F HMMPFYSYDIPHTCGP+P VCCQFDF RMG F +CPW+
Sbjct: 244 EFLWRQIWDNKGDTALFTHMMPFYSYDIPHTCGPDPKVCCQFDFKRMGSFGL-SCPWKVP 302
Query: 122 PVETNQENVQERALKLLDQYKKKSTLYRTNTLLVPLGDDFRYTTINEAEAQFRNYQLLFD 181
P + +NV R+ L+DQ+KKK+ LYRTN LL+PLGDDFR+ E + Q NY+ LF+
Sbjct: 303 PRTISDQNVAARSDLLVDQWKKKAELYRTNVLLIPLGDDFRFKQNTEWDVQRVNYERLFE 362
Query: 182 YINSNPSLNAEAKFGTLDDYFRTLREEADRINYSRPGEIGSGQVEGFPSLSGDFFTYADR 241
+INS N +A+FGTL +YF + +A+R +GQ E FP+LSGDFFTYADR
Sbjct: 363 HINSQAHFNVQAQFGTLQEYFDAV-HQAER----------AGQAE-FPTLSGDFFTYADR 410
Query: 242 QQDYWSGYYVSRPFFKAVDRVLEQTLRATEMMVALLLGYCQRAQCEKLPMSFAYKLTAAR 301
+YWSGYY SRP+ K +DRVL +RA EM+ A + A+ E+ +L AR
Sbjct: 411 SDNYWSGYYTSRPYHKRMDRVLMHYVRAAEMLSA-WHSWDGMARIEE-------RLEQAR 462
Query: 302 RNLALFQHHDGVTGTAKDHVVLDYGTRMHTSLQDLQIFMSKAIEVLLGIRERY--DQNLS 359
R L+LFQHHDG+TGTAK HVV+DY RM +L+ Q+ M +++ LL Y D + S
Sbjct: 463 RELSLFQHHDGITGTAKTHVVVDYEQRMQEALKACQMVMQQSVYRLLTKPSIYSPDFSFS 522
Query: 360 QFEPEQVR---SKYDAQPVHKVINVHEGTSQSVVIFNPLEQTREEIVMVIVNRPDITVLD 416
F + R S + ++ S+ VV+ N L RE++V V+ P ++V D
Sbjct: 523 YFTLDDSRWPGSGVEDSRTTIILGEDILPSKHVVMHNTLPHWREQLVDFYVSSPFVSVTD 582
Query: 417 SNWTCVQSQISPELRHGKSKIF--------TGRHRLHWKATIPALGLQVYYIANGFVGCD 468
V++Q+SP + T ++R+ +KA +P +GL Y +
Sbjct: 583 LANNPVEAQVSPVWSWHHDTLTKTIHPQGSTTKYRIIFKARVPPMGLATYVLT-----IS 637
Query: 469 KAKPVKLKYSSD-----NSFSCPTPYACSKIE-GDVADIRNR---HQILSFDVRHGLLQK 519
+KP Y+S+ N S P ++ GD +I R L+F GLL+
Sbjct: 638 DSKPEHTSYASNLLLRKNPTSLPLGQYPEDVKFGDPREISLRVGNGPTLAFS-EQGLLKS 696
Query: 520 ISHINGSQNV-VEEEIDMYS--SQG--SGAYLFMPNGDAHPITEAGGLMVISKGPLMEEA 574
I S +V V + Y S G SGAYLF+PNG A P+ +++++KG L E +
Sbjct: 697 IQLTQDSPHVPVHFKFLKYGVRSHGDRSGAYLFLPNGPASPVELGQPVVLVTKGKL-ESS 755
Query: 575 YSYPRTAWERSPISHSTRLYNGNNMIQEFLIEKEYHVELLSHNFNDRELIVRYKTDIDNK 634
S + + H T + G I+ V++ S ++ E+++R +T ID+
Sbjct: 756 VSVGLPS-----VVHQTIMRGGAPEIRNL-------VDIGS--LDNTEIVMRLETHIDSG 801
Query: 635 RIFYSDLNGFQMSRRETYDKIPLQGNYYPMPALAFMQGSNGQRFSVHSRQSLGVASLKDG 694
IFY+DLNG Q +R DK+PLQ NYYP+P+ F++ +N R ++ + Q LG +SL G
Sbjct: 802 DIFYTDLNGLQFIKRRRLDKLPLQANYYPIPSGMFIEDAN-TRLTLLTGQPLGGSSLASG 860
Query: 695 WLEIMXXXXXXXXXXXXXXQGVLDNRAMNVVFHILVE 731
LEIM QGVLDN+ + ++ +++E
Sbjct: 861 ELEIMQDRRLASDDERGLGQGVLDNKPVLHIYRLVLE 897
>pdb|1HXK|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With
Deoxymannojirimicin
pdb|1HWW|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With Swainsonine
Length = 1015
Score = 486 bits (1252), Expect = e-137, Method: Compositional matrix adjust.
Identities = 301/757 (39%), Positives = 428/757 (56%), Gaps = 70/757 (9%)
Query: 2 EGNMWLNDTIGFIPKNSWAIDPFGYSATMAYLLRRMGFENMLIQRTHYELKKELALHQNL 61
EG WL + P SWAIDPFG+S TM Y+L++ GF+NMLIQRTHY +KKELA + L
Sbjct: 154 EGQTWLKQFMNVTPTASWAIDPFGHSPTMPYILQKSGFKNMLIQRTHYSVKKELAQQRQL 213
Query: 62 EYIWRQSWDTEETSDIFVHMMPFYSYDIPHTCGPEPAVCCQFDFARMGGFFYEACPWRQN 121
E++WRQ WD + + +F HMMPFYSYDIPHTCGP+P VCCQFDF RMG F +CPW+
Sbjct: 214 EFLWRQIWDNKGDTALFTHMMPFYSYDIPHTCGPDPKVCCQFDFKRMGSFGL-SCPWKVP 272
Query: 122 PVETNQENVQERALKLLDQYKKKSTLYRTNTLLVPLGDDFRYTTINEAEAQFRNYQLLFD 181
P + +NV R+ L+DQ+KKK+ LYRTN LL+PLGDDFR+ E + Q NY+ LF+
Sbjct: 273 PRTISDQNVAARSDLLVDQWKKKAELYRTNVLLIPLGDDFRFKQNTEWDVQRVNYERLFE 332
Query: 182 YINSNPSLNAEAKFGTLDDYFRTLREEADRINYSRPGEIGSGQVEGFPSLSGDFFTYADR 241
+INS N +A+FGTL +YF + +A+R +GQ E FP+LSGDFFTYADR
Sbjct: 333 HINSQAHFNVQAQFGTLQEYFDAV-HQAER----------AGQAE-FPTLSGDFFTYADR 380
Query: 242 QQDYWSGYYVSRPFFKAVDRVLEQTLRATEMMVALLLGYCQRAQCEKLPMSFAYKLTAAR 301
+YWSGYY SRP+ K +DRVL +RA EM+ A + A+ E+ +L AR
Sbjct: 381 SDNYWSGYYTSRPYHKRMDRVLMHYVRAAEMLSA-WHSWDGMARIEE-------RLEQAR 432
Query: 302 RNLALFQHHDGVTGTAKDHVVLDYGTRMHTSLQDLQIFMSKAIEVLLGIRERY--DQNLS 359
R L+LFQHHDG+TGTAK HVV+DY RM +L+ Q+ M +++ LL Y D + S
Sbjct: 433 RELSLFQHHDGITGTAKTHVVVDYEQRMQEALKACQMVMQQSVYRLLTKPSIYSPDFSFS 492
Query: 360 QFEPEQVR---SKYDAQPVHKVINVHEGTSQSVVIFNPLEQTREEIVMVIVNRPDITVLD 416
F + R S + ++ S+ VV+ N L RE++V V+ P ++V D
Sbjct: 493 YFTLDDSRWPGSGVEDSRTTIILGEDILPSKHVVMHNTLPHWREQLVDFYVSSPFVSVTD 552
Query: 417 SNWTCVQSQISPELRHGKSKIF--------TGRHRLHWKATIPALGLQVYYIANGFVGCD 468
V++Q+SP + T ++R+ +KA +P +GL Y +
Sbjct: 553 LANNPVEAQVSPVWSWHHDTLTKTIHPQGSTTKYRIIFKARVPPMGLATYVLT-----IS 607
Query: 469 KAKPVKLKYSSD-----NSFSCPTPYACSKIE-GDVADIRNR---HQILSFDVRHGLLQK 519
+KP Y+S+ N S P ++ GD +I R L+F GLL+
Sbjct: 608 DSKPEHTSYASNLLLRKNPTSLPLGQYPEDVKFGDPREISLRVGNGPTLAFS-EQGLLKS 666
Query: 520 ISHINGSQNV-VEEEIDMYS--SQG--SGAYLFMPNGDAHPITEAGGLMVISKGPLMEEA 574
I S +V V + Y S G SGAYLF+PNG A P+ +++++KG L E +
Sbjct: 667 IQLTQDSPHVPVHFKFLKYGVRSHGDRSGAYLFLPNGPASPVELGQPVVLVTKGKL-ESS 725
Query: 575 YSYPRTAWERSPISHSTRLYNGNNMIQEFLIEKEYHVELLSHNFNDRELIVRYKTDIDNK 634
S + + H T + G I+ V++ S ++ E+++R +T ID+
Sbjct: 726 VSVGLPS-----VVHQTIMRGGAPEIRNL-------VDIGS--LDNTEIVMRLETHIDSG 771
Query: 635 RIFYSDLNGFQMSRRETYDKIPLQGNYYPMPALAFMQGSNGQRFSVHSRQSLGVASLKDG 694
IFY+DLNG Q +R DK+PLQ NYYP+P+ F++ +N R ++ + Q LG +SL G
Sbjct: 772 DIFYTDLNGLQFIKRRRLDKLPLQANYYPIPSGMFIEDAN-TRLTLLTGQPLGGSSLASG 830
Query: 695 WLEIMXXXXXXXXXXXXXXQGVLDNRAMNVVFHILVE 731
LEIM QGVLDN+ + ++ +++E
Sbjct: 831 ELEIMQDRRLASDDERGLGQGVLDNKPVLHIYRLVLE 867
>pdb|1QWU|A Chain A, Golgi Alpha-Mannosidase Ii D341n Mutant Complex With
5-F-Guloside
pdb|1QX1|A Chain A, Golgi Alpha-Mannosidase Ii D341n Mutant Complex With
2-F-Mannosyl-F
pdb|3BUP|A Chain A, Golgi Alpha-Mannosidase Ii D341n Acid-Base Catalyst Mutant
With Bound Mannose
Length = 1045
Score = 485 bits (1248), Expect = e-137, Method: Compositional matrix adjust.
Identities = 300/757 (39%), Positives = 428/757 (56%), Gaps = 70/757 (9%)
Query: 2 EGNMWLNDTIGFIPKNSWAIDPFGYSATMAYLLRRMGFENMLIQRTHYELKKELALHQNL 61
EG WL + P SWAIDPFG+S TM Y+L++ GF+NMLIQRTHY +KKELA + L
Sbjct: 184 EGQTWLKQFMNVTPTASWAIDPFGHSPTMPYILQKSGFKNMLIQRTHYSVKKELAQQRQL 243
Query: 62 EYIWRQSWDTEETSDIFVHMMPFYSYDIPHTCGPEPAVCCQFDFARMGGFFYEACPWRQN 121
E++WRQ WD + + +F HMMPFYSYDIPHTCGP+P VCCQFDF RMG F +CPW+
Sbjct: 244 EFLWRQIWDNKGDTALFTHMMPFYSYDIPHTCGPDPKVCCQFDFKRMGSFGL-SCPWKVP 302
Query: 122 PVETNQENVQERALKLLDQYKKKSTLYRTNTLLVPLGDDFRYTTINEAEAQFRNYQLLFD 181
P + +NV R+ L+DQ+KKK+ LYRTN LL+PLGD+FR+ E + Q NY+ LF+
Sbjct: 303 PRTISDQNVAARSDLLVDQWKKKAELYRTNVLLIPLGDNFRFKQNTEWDVQRVNYERLFE 362
Query: 182 YINSNPSLNAEAKFGTLDDYFRTLREEADRINYSRPGEIGSGQVEGFPSLSGDFFTYADR 241
+INS N +A+FGTL +YF + +A+R +GQ E FP+LSGDFFTYADR
Sbjct: 363 HINSQAHFNVQAQFGTLQEYFDAV-HQAER----------AGQAE-FPTLSGDFFTYADR 410
Query: 242 QQDYWSGYYVSRPFFKAVDRVLEQTLRATEMMVALLLGYCQRAQCEKLPMSFAYKLTAAR 301
+YWSGYY SRP+ K +DRVL +RA EM+ A + A+ E+ +L AR
Sbjct: 411 SDNYWSGYYTSRPYHKRMDRVLMHYVRAAEMLSA-WHSWDGMARIEE-------RLEQAR 462
Query: 302 RNLALFQHHDGVTGTAKDHVVLDYGTRMHTSLQDLQIFMSKAIEVLLGIRERY--DQNLS 359
R L+LFQHHDG+TGTAK HVV+DY RM +L+ Q+ M +++ LL Y D + S
Sbjct: 463 RELSLFQHHDGITGTAKTHVVVDYEQRMQEALKACQMVMQQSVYRLLTKPSIYSPDFSFS 522
Query: 360 QFEPEQVR---SKYDAQPVHKVINVHEGTSQSVVIFNPLEQTREEIVMVIVNRPDITVLD 416
F + R S + ++ S+ VV+ N L RE++V V+ P ++V D
Sbjct: 523 YFTLDDSRWPGSGVEDSRTTIILGEDILPSKHVVMHNTLPHWREQLVDFYVSSPFVSVTD 582
Query: 417 SNWTCVQSQISPELRHGKSKIF--------TGRHRLHWKATIPALGLQVYYIANGFVGCD 468
V++Q+SP + T ++R+ +KA +P +GL Y +
Sbjct: 583 LANNPVEAQVSPVWSWHHDTLTKTIHPQGSTTKYRIIFKARVPPMGLATYVLT-----IS 637
Query: 469 KAKPVKLKYSSD-----NSFSCPTPYACSKIE-GDVADIRNR---HQILSFDVRHGLLQK 519
+KP Y+S+ N S P ++ GD +I R L+F GLL+
Sbjct: 638 DSKPEHTSYASNLLLRKNPTSLPLGQYPEDVKFGDPREISLRVGNGPTLAFS-EQGLLKS 696
Query: 520 ISHINGSQNV-VEEEIDMYS--SQG--SGAYLFMPNGDAHPITEAGGLMVISKGPLMEEA 574
I S +V V + Y S G SGAYLF+PNG A P+ +++++KG L E +
Sbjct: 697 IQLTQDSPHVPVHFKFLKYGVRSHGDRSGAYLFLPNGPASPVELGQPVVLVTKGKL-ESS 755
Query: 575 YSYPRTAWERSPISHSTRLYNGNNMIQEFLIEKEYHVELLSHNFNDRELIVRYKTDIDNK 634
S + + H T + G I+ V++ S ++ E+++R +T ID+
Sbjct: 756 VSVGLPS-----VVHQTIMRGGAPEIRNL-------VDIGS--LDNTEIVMRLETHIDSG 801
Query: 635 RIFYSDLNGFQMSRRETYDKIPLQGNYYPMPALAFMQGSNGQRFSVHSRQSLGVASLKDG 694
IFY+DLNG Q +R DK+PLQ NYYP+P+ F++ +N R ++ + Q LG +SL G
Sbjct: 802 DIFYTDLNGLQFIKRRRLDKLPLQANYYPIPSGMFIEDAN-TRLTLLTGQPLGGSSLASG 860
Query: 695 WLEIMXXXXXXXXXXXXXXQGVLDNRAMNVVFHILVE 731
LEIM QGVLDN+ + ++ +++E
Sbjct: 861 ELEIMQDRRLASDDERGLGQGVLDNKPVLHIYRLVLE 897
>pdb|3CV5|A Chain A, Golgi Mannosidase Ii D204a Catalytic Nucleophile Mutant
Complex With 3alpha,6alpha-Mannopentaose
pdb|3CZN|A Chain A, Golgi Alpha-Mannosidase Ii (D204a Nucleophile Mutant) In
Complex With Gnman5gn
pdb|3CZS|A Chain A, Golgi Alpha-Mannosidase Ii (D204a Nucleophile Mutant)
pdb|3BUD|A Chain A, Golgi Mannosidase Ii D204a Catalytic Nucleophile Mutant
With An Empty Active Site
pdb|3BUI|A Chain A, Golgi Mannosidase Ii D204a Catalytic Nucleophile Mutant
Complex With Tris
pdb|3BUQ|A Chain A, Golgi Alpha-Mannosidase Ii D204a Catalytic Nucleophile
Mutant With Bound Mannose.
pdb|3BVT|A Chain A, Golgi Mannosidase Ii D204a Catalytic Nucleophile Mutant
Complex With Methyl
(Alpha-D-Mannopyranosyl)-(1->3)-S-Alpha-D-
Mannopyranoside
pdb|3BVU|A Chain A, Golgi Mannosidase Ii D204a Catalytic Nucleophile Mutant
Complex With
Methyl(Alpha-D-Mannopyranosyl)-(1->3)-S-[(Alpha-D-
Mannopyranosyl)-(1- >6)]-Alpha-D-Mannopyranoside
pdb|3BVV|A Chain A, Golgi Mannosidase Ii D204a Catalytic Nucleophile Mutant
Complex With Methyl
Alpha-D-Mannopyranosyl-(1->3)-[6-Thio-
Alpha-D-Mannopyranosyl-(1->6)]-Beta-D-Mannopyranoside
pdb|3BVW|A Chain A, Golgi Mannosidase Ii D204a Catalytic Nucleophile Mutant
Complex With Methyl (2-Deoxy-2-Acetamido-Beta-D-
Glucopyranosyl)-(1->2)-Alpha-D-Mannopyranosyl- (1->3)-
[alpha-D-Mannopyranosyl-(1->6)-6-Thio-Alpha-D-
Mannopyranosyl- (1->6)]-Beta-D-Mannopyranoside
pdb|3BVX|A Chain A, Golgi Mannosidase Ii D204a Catalytic Nucleophile Mutant
Complex With Methyl (2-Deoxy-2-Acetamido-Beta-D-
Glucopyranosyl)-(1->2)-(Alpha-D-Mannopyranosyl)- (1->3)-
[(Alpha-D-Mannopyranosyl)-(1->6)-(Alpha-D-
Mannopyranosyl)- (1->6)]-Beta-D-Mannopyranoside
Length = 1045
Score = 484 bits (1246), Expect = e-137, Method: Compositional matrix adjust.
Identities = 300/757 (39%), Positives = 427/757 (56%), Gaps = 70/757 (9%)
Query: 2 EGNMWLNDTIGFIPKNSWAIDPFGYSATMAYLLRRMGFENMLIQRTHYELKKELALHQNL 61
EG WL + P SWAI PFG+S TM Y+L++ GF+NMLIQRTHY +KKELA + L
Sbjct: 184 EGQTWLKQFMNVTPTASWAIAPFGHSPTMPYILQKSGFKNMLIQRTHYSVKKELAQQRQL 243
Query: 62 EYIWRQSWDTEETSDIFVHMMPFYSYDIPHTCGPEPAVCCQFDFARMGGFFYEACPWRQN 121
E++WRQ WD + + +F HMMPFYSYDIPHTCGP+P VCCQFDF RMG F +CPW+
Sbjct: 244 EFLWRQIWDNKGDTALFTHMMPFYSYDIPHTCGPDPKVCCQFDFKRMGSFGL-SCPWKVP 302
Query: 122 PVETNQENVQERALKLLDQYKKKSTLYRTNTLLVPLGDDFRYTTINEAEAQFRNYQLLFD 181
P + +NV R+ L+DQ+KKK+ LYRTN LL+PLGDDFR+ E + Q NY+ LF+
Sbjct: 303 PRTISDQNVAARSDLLVDQWKKKAELYRTNVLLIPLGDDFRFKQNTEWDVQRVNYERLFE 362
Query: 182 YINSNPSLNAEAKFGTLDDYFRTLREEADRINYSRPGEIGSGQVEGFPSLSGDFFTYADR 241
+INS N +A+FGTL +YF + +A+R +GQ E FP+LSGDFFTYADR
Sbjct: 363 HINSQAHFNVQAQFGTLQEYFDAV-HQAER----------AGQAE-FPTLSGDFFTYADR 410
Query: 242 QQDYWSGYYVSRPFFKAVDRVLEQTLRATEMMVALLLGYCQRAQCEKLPMSFAYKLTAAR 301
+YWSGYY SRP+ K +DRVL +RA EM+ A + A+ E+ +L AR
Sbjct: 411 SDNYWSGYYTSRPYHKRMDRVLMHYVRAAEMLSA-WHSWDGMARIEE-------RLEQAR 462
Query: 302 RNLALFQHHDGVTGTAKDHVVLDYGTRMHTSLQDLQIFMSKAIEVLLGIRERY--DQNLS 359
R L+LFQHHDG+TGTAK HVV+DY RM +L+ Q+ M +++ LL Y D + S
Sbjct: 463 RELSLFQHHDGITGTAKTHVVVDYEQRMQEALKACQMVMQQSVYRLLTKPSIYSPDFSFS 522
Query: 360 QFEPEQVR---SKYDAQPVHKVINVHEGTSQSVVIFNPLEQTREEIVMVIVNRPDITVLD 416
F + R S + ++ S+ VV+ N L RE++V V+ P ++V D
Sbjct: 523 YFTLDDSRWPGSGVEDSRTTIILGEDILPSKHVVMHNTLPHWREQLVDFYVSSPFVSVTD 582
Query: 417 SNWTCVQSQISPELRHGKSKIF--------TGRHRLHWKATIPALGLQVYYIANGFVGCD 468
V++Q+SP + T ++R+ +KA +P +GL Y +
Sbjct: 583 LANNPVEAQVSPVWSWHHDTLTKTIHPQGSTTKYRIIFKARVPPMGLATYVLT-----IS 637
Query: 469 KAKPVKLKYSSD-----NSFSCPTPYACSKIE-GDVADIRNR---HQILSFDVRHGLLQK 519
+KP Y+S+ N S P ++ GD +I R L+F GLL+
Sbjct: 638 DSKPEHTSYASNLLLRKNPTSLPLGQYPEDVKFGDPREISLRVGNGPTLAFS-EQGLLKS 696
Query: 520 ISHINGSQNV-VEEEIDMYS--SQG--SGAYLFMPNGDAHPITEAGGLMVISKGPLMEEA 574
I S +V V + Y S G SGAYLF+PNG A P+ +++++KG L E +
Sbjct: 697 IQLTQDSPHVPVHFKFLKYGVRSHGDRSGAYLFLPNGPASPVELGQPVVLVTKGKL-ESS 755
Query: 575 YSYPRTAWERSPISHSTRLYNGNNMIQEFLIEKEYHVELLSHNFNDRELIVRYKTDIDNK 634
S + + H T + G I+ V++ S ++ E+++R +T ID+
Sbjct: 756 VSVGLPS-----VVHQTIMRGGAPEIRNL-------VDIGS--LDNTEIVMRLETHIDSG 801
Query: 635 RIFYSDLNGFQMSRRETYDKIPLQGNYYPMPALAFMQGSNGQRFSVHSRQSLGVASLKDG 694
IFY+DLNG Q +R DK+PLQ NYYP+P+ F++ +N R ++ + Q LG +SL G
Sbjct: 802 DIFYTDLNGLQFIKRRRLDKLPLQANYYPIPSGMFIEDAN-TRLTLLTGQPLGGSSLASG 860
Query: 695 WLEIMXXXXXXXXXXXXXXQGVLDNRAMNVVFHILVE 731
LEIM QGVLDN+ + ++ +++E
Sbjct: 861 ELEIMQDRRLASDDERGLGQGVLDNKPVLHIYRLVLE 897
>pdb|1HTY|A Chain A, Golgi Alpha-Mannosidase Ii
Length = 1015
Score = 460 bits (1184), Expect = e-129, Method: Compositional matrix adjust.
Identities = 293/757 (38%), Positives = 413/757 (54%), Gaps = 70/757 (9%)
Query: 2 EGNMWLNDTIGFIPKNSWAIDPFGYSATMAYLLRRMGFENMLIQRTHYELKKELALHQNL 61
EG WL P SWAIDPFG+S T Y+L++ GF+NMLIQRTHY +KKELA + L
Sbjct: 154 EGQTWLKQFXNVTPTASWAIDPFGHSPTXPYILQKSGFKNMLIQRTHYSVKKELAQQRQL 213
Query: 62 EYIWRQSWDTEETSDIFVHMMPFYSYDIPHTCGPEPAVCCQFDFARMGGFFYEACPWRQN 121
E++WRQ WD + + +F H PFYSYDIPHTCGP+P VCCQFDF R G F +CPW+
Sbjct: 214 EFLWRQIWDNKGDTALFTHXXPFYSYDIPHTCGPDPKVCCQFDFKRXGSFGL-SCPWKVP 272
Query: 122 PVETNQENVQERALKLLDQYKKKSTLYRTNTLLVPLGDDFRYTTINEAEAQFRNYQLLFD 181
P + +NV R+ L+DQ+KKK+ LYRTN LL+PLGDDFR+ E + Q NY+ LF+
Sbjct: 273 PRTISDQNVAARSDLLVDQWKKKAELYRTNVLLIPLGDDFRFKQNTEWDVQRVNYERLFE 332
Query: 182 YINSNPSLNAEAKFGTLDDYFRTLREEADRINYSRPGEIGSGQVEGFPSLSGDFFTYADR 241
+INS N +A+FGTL +YF + +A+R +GQ E FP+LSGDFFTYADR
Sbjct: 333 HINSQAHFNVQAQFGTLQEYFDAV-HQAER----------AGQAE-FPTLSGDFFTYADR 380
Query: 242 QQDYWSGYYVSRPFFKAVDRVLEQTLRATEMMVALLLGYCQRAQCEKLPMSFAYKLTAAR 301
+YWSGYY SRP+ K DRVL +RA E + A + A+ E+ +L AR
Sbjct: 381 SDNYWSGYYTSRPYHKRXDRVLXHYVRAAEXLSA-WHSWDGMARIEE-------RLEQAR 432
Query: 302 RNLALFQHHDGVTGTAKDHVVLDYGTRMHTSLQDLQIFMSKAIEVLLGIRERY--DQNLS 359
R L+LFQHHDG+TGTAK HVV+DY R +L+ Q +++ LL Y D + S
Sbjct: 433 RELSLFQHHDGITGTAKTHVVVDYEQRXQEALKACQXVXQQSVYRLLTKPSIYSPDFSFS 492
Query: 360 QFEPEQVR---SKYDAQPVHKVINVHEGTSQSVVIFNPLEQTREEIVMVIVNRPDITVLD 416
F + R S + ++ S+ VV N L RE++V V+ P ++V D
Sbjct: 493 YFTLDDSRWPGSGVEDSRTTIILGEDILPSKHVVXHNTLPHWREQLVDFYVSSPFVSVTD 552
Query: 417 SNWTCVQSQISPELRHGKSKIF--------TGRHRLHWKATIPALGLQVYYIANGFVGCD 468
V++Q+SP + T ++R+ +KA +P GL Y +
Sbjct: 553 LANNPVEAQVSPVWSWHHDTLTKTIHPQGSTTKYRIIFKARVPPXGLATYVLT-----IS 607
Query: 469 KAKPVKLKYSSD-----NSFSCPTPYACSKIE-GDVADIRNR---HQILSFDVRHGLLQK 519
+KP Y+S+ N S P ++ GD +I R L+F GLL+
Sbjct: 608 DSKPEHTSYASNLLLRKNPTSLPLGQYPEDVKFGDPREISLRVGNGPTLAFS-EQGLLKS 666
Query: 520 ISHINGSQNV-VEEEIDMYS--SQG--SGAYLFMPNGDAHPITEAGGLMVISKGPLMEEA 574
I S +V V + Y S G SGAYLF+PNG A P+ +++++KG L E +
Sbjct: 667 IQLTQDSPHVPVHFKFLKYGVRSHGDRSGAYLFLPNGPASPVELGQPVVLVTKGKL-ESS 725
Query: 575 YSYPRTAWERSPISHSTRLYNGNNMIQEFLIEKEYHVELLSHNFNDRELIVRYKTDIDNK 634
S + + H T G I+ V++ S ++ E++ R +T ID+
Sbjct: 726 VSVGLPS-----VVHQTIXRGGAPEIRNL-------VDIGS--LDNTEIVXRLETHIDSG 771
Query: 635 RIFYSDLNGFQMSRRETYDKIPLQGNYYPMPALAFMQGSNGQRFSVHSRQSLGVASLKDG 694
IFY+DLNG Q +R DK+PLQ NYYP+P+ F++ +N R ++ + Q LG +SL G
Sbjct: 772 DIFYTDLNGLQFIKRRRLDKLPLQANYYPIPSGXFIEDAN-TRLTLLTGQPLGGSSLASG 830
Query: 695 WLEIMXXXXXXXXXXXXXXQGVLDNRAMNVVFHILVE 731
LEI QGVLDN+ + ++ +++E
Sbjct: 831 ELEIXQDRRLASDDERGLGQGVLDNKPVLHIYRLVLE 867
>pdb|1O7D|A Chain A, The Structure Of The Bovine Lysosomal A-Mannosidase
Suggests A Novel Mechanism For Low Ph Activation
Length = 298
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 77/182 (42%), Gaps = 28/182 (15%)
Query: 15 PKNSWAIDPFGYSATMAYLLRRMGFENMLIQRTHYELKKELALHQNLEYIWRQSWDTE-E 73
P+ +W IDPFG+S A L +MGF+ R Y+ KK +E +WR S +
Sbjct: 140 PRVAWHIDPFGHSREQASLFAQMGFDGFFFGRLDYQDKKVRKKTLQMEQVWRASTSLKPP 199
Query: 74 TSDIFVHMMPFYSYDIPHTCGPEPAVCCQFDFARMGGFFYEACPWRQNPVETNQENVQER 133
T+D+F ++ P+ P +C A PV + + +
Sbjct: 200 TADLFTSVL-------PNMYNPPEGLCWDMLCA-------------DKPVVEDTRSPEYN 239
Query: 134 ALKLLDQYKKKST----LYRTNTLLVPLGDDFRYTTINEAEAQFRNYQLLFDYINSNPSL 189
A +L+ + K +T LYRT ++ +G DF+Y N F+N L +N+
Sbjct: 240 AKELVRYFLKLATDQGKLYRTKHTVMTMGSDFQYENAN---TWFKNLDKLIQLVNAQQRA 296
Query: 190 NA 191
N
Sbjct: 297 NG 298
>pdb|1O7D|D Chain D, The Structure Of The Bovine Lysosomal A-Mannosidase
Suggests A Novel Mechanism For Low Ph Activation
Length = 282
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 85/171 (49%), Gaps = 20/171 (11%)
Query: 538 SSQGSGAYLFMPNGDAHPITEAGGLMVISKGPLMEEAYSYPRTAWERSPISHSTRLYNGN 597
SSQ SGAY+F PN + + K L++E + +AW S RLY
Sbjct: 51 SSQASGAYIFRPNQNKPLFVSHWAQTHLVKASLVQEVHQ-NFSAW----CSQVVRLYP-- 103
Query: 598 NMIQEFLIEKEYHVELLS-HNFNDRELIVRYKTDIDNKRIFYSDLNGFQ-MSRRETYDKI 655
++ +E E+ V + + +E+I R+ T + + +FY+D NG + + RR Y
Sbjct: 104 ---RQRHLELEWTVGPIPVGDGWGKEVISRFDTALATRGLFYTDSNGREILERRRNYRPT 160
Query: 656 -------PLQGNYYPMPALAFMQGSNGQRFSVHSRQSLGVASLKDGWLEIM 699
P+ GNYYP+ + ++ N Q +V + +S G +SL+DG LE+M
Sbjct: 161 WKLNQTEPVAGNYYPVNSRIYITDGNMQ-LTVLTDRSQGGSSLRDGSLELM 210
>pdb|1O7D|C Chain C, The Structure Of The Bovine Lysosomal A-Mannosidase
Suggests A Novel Mechanism For Low Ph Activation
Length = 159
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 72/162 (44%), Gaps = 28/162 (17%)
Query: 304 LALFQHHDGVTGTAKDHVVLDYGTRMHTSLQDLQIFMSKAIEVLLGIRERY----DQNLS 359
+A+ QHHD V+GT++ HV DY ++ + ++ MS A+ L G++E + N+S
Sbjct: 10 MAVLQHHDAVSGTSRQHVANDYARQLSEGWRPCEVLMSNALAHLSGLKEDFAFCRKLNIS 69
Query: 360 QFEPEQVRSKYDAQPVHKVINVHEGTSQSVVIFNPLEQTREEIVMVIVNRPDITVLDSNW 419
Q ++ V+++NPL + + +V + V++ V D
Sbjct: 70 ICPLTQTAERFQ-----------------VIVYNPLGRKVDWMVRLPVSKHVYLVKDPGG 112
Query: 420 TCVQSQISPELRHGKSKIFTGRHRLHWKATIPALGLQVYYIA 461
V S + + + L + A +PA+G +Y ++
Sbjct: 113 KIVPSDVV-------TIPSSDSQELLFSALVPAVGFSIYSVS 147
>pdb|1O7D|B Chain B, The Structure Of The Bovine Lysosomal A-Mannosidase
Suggests A Novel Mechanism For Low Ph Activation
Length = 84
Score = 37.7 bits (86), Expect = 0.030, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 24/43 (55%)
Query: 234 DFFTYADRQQDYWSGYYVSRPFFKAVDRVLEQTLRATEMMVAL 276
DFF YAD +W+GY+ SRP K +R+ L+ + AL
Sbjct: 30 DFFPYADGPYMFWTGYFSSRPALKRYERLSYNFLQVCNQLEAL 72
>pdb|3KT0|A Chain A, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet
pdb|3KT3|A Chain A, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With Trpamp
pdb|3KT3|B Chain B, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With Trpamp
pdb|3KT3|C Chain C, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With Trpamp
pdb|3KT3|D Chain D, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With Trpamp
pdb|3KT6|A Chain A, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With Trp
pdb|3KT6|B Chain B, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With Trp
pdb|3KT6|C Chain C, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With Trp
pdb|3KT6|D Chain D, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With Trp
pdb|3KT8|A Chain A, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With L-Tryptophanamide
pdb|3KT8|B Chain B, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With L-Tryptophanamide
pdb|3KT8|C Chain C, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With L-Tryptophanamide
pdb|3KT8|D Chain D, Crystal Structure Of S. Cerevisiae Tryptophanyl-Trna
Synthet Complex With L-Tryptophanamide
Length = 438
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
Query: 199 DDYFRTLREEADRINYSRPGEIGSGQVEGFPSLSG 233
D YFR R+ AD++ YS+P + S FP+L G
Sbjct: 260 DPYFRVCRDVADKLKYSKPALLHS---RFFPALQG 291
>pdb|2IP1|A Chain A, Crystal Structure Analysis Of S. Cerevisiae Tryptophanyl
Trna Synthetase
Length = 432
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
Query: 199 DDYFRTLREEADRINYSRPGEIGSGQVEGFPSLSG 233
D YFR R+ AD++ YS+P + S FP+L G
Sbjct: 260 DPYFRVCRDVADKLKYSKPALLHS---RFFPALQG 291
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,000,934
Number of Sequences: 62578
Number of extensions: 1137984
Number of successful extensions: 2184
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 2118
Number of HSP's gapped (non-prelim): 17
length of query: 909
length of database: 14,973,337
effective HSP length: 108
effective length of query: 801
effective length of database: 8,214,913
effective search space: 6580145313
effective search space used: 6580145313
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)