Query 002547
Match_columns 909
No_of_seqs 242 out of 1122
Neff 8.1
Searched_HMMs 29240
Date Tue Mar 26 16:12:10 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002547.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1267-1271//hhsearch_pdb/002547hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bvx_A Alpha-mannosidase 2; fa 1.0 1 1 1351.6 83.9 836 1-907 183-1045(1045)
2 2wyh_A Alpha-mannosidase; hydr 1.0 1 1 839.2 70.1 708 1-906 127-923 (923)
3 3lvt_A Glycosyl hydrolase, fam 1.0 1 1 755.1 70.2 713 1-904 108-898 (899)
4 1o7d_D Lysosomal alpha-mannosi 1.0 1 1 446.8 27.1 250 498-771 2-272 (282)
5 1o7d_A Lysosomal alpha-mannosi 1.0 1 1 320.2 17.9 167 1-190 124-297 (298)
6 1o7d_C Lysosomal alpha-mannosi 1.0 1 1 222.9 16.7 149 296-464 2-150 (159)
7 1o7d_B Lysosomal alpha-mannosi 1.0 1 1 168.4 6.5 75 189-279 1-75 (84)
8 1o7d_E Lysosomal alpha-mannosi 1.0 1 1 150.9 8.9 111 781-909 2-124 (126)
9 1k1x_A 4-alpha-glucanotransfer 1.0 1 1 47.2 4.1 44 2-47 104-147 (659)
10 3p0b_A TT1467 protein; glycosi 1.0 1 1 39.3 14.8 264 2-329 184-497 (540)
No 1
>3bvx_A Alpha-mannosidase 2; family 38 glycoysl hydrolase, glycosidase, golgi apparatus, membrane, signal-anchor, transmembrane; HET: WZ5; 1.10A {Drosophila melanogaster} SCOP: a.8.3.1 b.30.5.6 c.6.2.1 PDB: 3bud_A 3buq_A* 3bvt_A* 3bui_A* 3bvv_A* 3bvw_A* 3bvu_A* 3cv5_A* 3czn_A* 3czs_A* 2ow6_A* 1r33_A* 1r34_A* 1tqs_A* 1tqt_A* 1tqu_A* 1tqv_A* 1tqw_A* 2alw_A* 2f18_A* ...
Probab=1.00 E-value=1 Score=1351.58 Aligned_cols=836 Identities=38% Similarity=0.614 Sum_probs=693.8
Q ss_pred CHHHHHHHHHCCCCCCCCEECCCCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCEEEEEEECCCCCCCCCEEEE
Q ss_conf 91155888440999772033499999857899999849860789606888899985327648999637999999862783
Q 002547 1 MEGNMWLNDTIGFIPKNSWAIDPFGYSATMAYLLRRMGFENMLIQRTHYELKKELALHQNLEYIWRQSWDTEETSDIFVH 80 (909)
Q Consensus 1 t~Gh~~l~~~fG~~p~vgW~iDpFGhS~~~p~Ll~~~G~~~~v~~Ri~~~~k~~~~~~k~leF~Wr~~~~~~~~s~ifth 80 (909)
++||+|++++||+.|++||+|||||||++||+||++|||++++|+|++|++|+.|+..+.+||+|+|+|+..+|++||||
T Consensus 183 ~~G~~~~~~~FG~~~~~~W~pD~FG~s~~lPqil~~~Gi~~~~~~R~~~~~~~~~~~~k~~eF~W~~~w~~~dGs~Ilt~ 262 (1045)
T 3bvx_A 183 TEGQTWLKQFMNVTPTASWAIAPFGHSPTMPYILQKSGFKNMLIQRTHYSVKKELAQQRQLEFLWRQIWDNKGDTALFTH 262 (1045)
T ss_dssp HHHHHHHHHHHCCCCCEEEECCSSSBCTHHHHHHHTTTCCEEEECCCCHHHHHHHHHTTCSEEEECCTTCSSCTTCEEEE
T ss_pred HHHHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEE
T ss_conf 99999999982999725872799986589999999759975999414420000012367845998377779999948998
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCC
Q ss_conf 07987558998779999610012212358753346988889987992239999999999998612445678499970399
Q 002547 81 MMPFYSYDIPHTCGPEPAVCCQFDFARMGGFFYEACPWRQNPVETNQENVQERALKLLDQYKKKSTLYRTNTLLVPLGDD 160 (909)
Q Consensus 81 ~l~~y~Y~~p~~c~p~~~~c~~fDf~~~~g~~~~~~~~~~~p~~i~~~nv~~r~~~l~~~~~~~a~~~~tn~il~p~G~D 160 (909)
++|+++|++||+|||+|+|||+|||.+++|+++ .|||.++|..++++|+++|++.+++++++++.+|+++++|+|+|+|
T Consensus 263 ~~p~~~Y~~~~~~gp~~~~c~~fdf~~l~~~~~-~~~~~~~p~~~~~~nv~~r~~~~~~~~~~~~~~~~t~~~l~~~G~d 341 (1045)
T 3bvx_A 263 MMPFYSYDIPHTCGPDPKVCCQFDFKRMGSFGL-SCPWKVPPRTISDQNVAARSDLLVDQWKKKAELYRTNVLLIPLGDD 341 (1045)
T ss_dssp ECCSSCSSGGGTSSSCHHHHGGGCGGGSSTTSC-CCTTSCCCCCCCTTTHHHHHHHHHHHHHHHHTTSSSSEEEEEEEEE
T ss_pred ECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCC
T ss_conf 615666576655688855331212022456544-5755677655627999999999999999861035788699995479
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 89998124899999699999999339997338994897899999999751024789987789976789762387313545
Q 002547 161 FRYTTINEAEAQFRNYQLLFDYINSNPSLNAEAKFGTLDDYFRTLREEADRINYSRPGEIGSGQVEGFPSLSGDFFTYAD 240 (909)
Q Consensus 161 f~y~~~~~a~~~f~n~~kli~~iN~~~~~~~~i~~sT~~dYf~al~~~~~~~~~~~~~~~~~~~~~~~p~~~gDffpya~ 240 (909)
|+|.++.+|..+|+||++||+|+|++++..++++|||++|||++++++... ....||+++||||+|++
T Consensus 342 ~~~~~~~~~~~~~~n~~~li~~in~~~~~~~~v~~sT~~~yf~~l~~~~~~------------~~~~lp~~~Ge~~~~~~ 409 (1045)
T 3bvx_A 342 FRFKQNTEWDVQRVNYERLFEHINSQAHFNVQAQFGTLQEYFDAVHQAERA------------GQAEFPTLSGDFFTYAD 409 (1045)
T ss_dssp TCSCSHHHHHHHHHHHHHHHHHHHHCGGGCEEEEECCHHHHHHHHHHHHHT------------TSCCCCEEESCBCSCEE
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHCCC------------CCCCCCCCCCCCCCCCC
T ss_conf 888652256788888999999986088877069987999999999865214------------44668614774366566
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHH
Q ss_conf 68976368832621034688999899999999999985001233336686146899999999965321246767886145
Q 002547 241 RQQDYWSGYYVSRPFFKAVDRVLEQTLRATEMMVALLLGYCQRAQCEKLPMSFAYKLTAARRNLALFQHHDGVTGTAKDH 320 (909)
Q Consensus 241 ~~~~yWtGyyTSRp~~K~~~R~~e~~L~~aE~L~sla~~~~~~~~~~~~~~~~~~~l~~a~~~l~l~QhHDaItGTsk~~ 320 (909)
++++||+|||||||.+|+++|++|++|++||+|+++|... +..++ .+.|+.+|++|+++||||+||||++++
T Consensus 410 ~~~~yw~G~yTSr~~~K~~nR~~e~~L~~aE~l~ala~~~-----~~~~~---~~~L~~~wk~lll~QhHD~i~Gts~~~ 481 (1045)
T 3bvx_A 410 RSDNYWSGYYTSRPYHKRMDRVLMHYVRAAEMLSAWHSWD-----GMARI---EERLEQARRELSLFQHHDGITGTAKTH 481 (1045)
T ss_dssp ETTEECCGGGTSSHHHHHHHHHHHHHHHHHHHHHHTSCCC-----GGGCH---HHHHHHHHHHHHHHTBTTTTTSCSCHH
T ss_pred CCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHC-----CCCCC---HHHHHHHHHHHHCCCCCCCCCCCCHHH
T ss_conf 7763006326056899999999999999999999998761-----78760---899999999975502566777758079
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC--CCCCCCCCCCCCC-CCCCCCCCCEEEEECCCC---EEEEEEECC
Q ss_conf 7875999999999999999999999996043345--6788764410102-436788840376405886---249999928
Q 002547 321 VVLDYGTRMHTSLQDLQIFMSKAIEVLLGIRERY--DQNLSQFEPEQVR-SKYDAQPVHKVINVHEGT---SQSVVIFNP 394 (909)
Q Consensus 321 V~~Dy~~rL~~~~~~~~~v~~~~l~~l~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~vvvyNp 394 (909)
|++||..||..+++.++.++..++..|+...... +.....+.....+ .+.+.|+.+..+..+ ++ ...|+||||
T Consensus 482 V~~d~~~rl~~a~~~~~~l~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~vvvfN~ 560 (1045)
T 3bvx_A 482 VVVDYEQRMQEALKACQMVMQQSVYRLLTKPSIYSPDFSFSYFTLDDSRWPGSGVEDSRTTIILG-EDILPSKHVVMHNT 560 (1045)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTBCTTTCCCCTTSCSEEEECSSSSCTTTCCCCCEECCB-TTTBSEEEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCC-CCCCCCCEEEEECC
T ss_conf 99999999999999999999999999863434334443221111012101232346654432346-66567746999949
Q ss_pred CCCCEEEEEEEEECCCCEEEECCCCEEEEEEECCCCCCCC--------CCCCCCCEEEEEEEEECCCCEEEEEEEECCCC
Q ss_conf 7652359999997589579992798086563013412587--------53336717999999408881499999948667
Q 002547 395 LEQTREEIVMVIVNRPDITVLDSNWTCVQSQISPELRHGK--------SKIFTGRHRLHWKATIPALGLQVYYIANGFVG 466 (909)
Q Consensus 395 L~~~r~~~V~i~v~~~~~~V~d~~G~~v~~Qi~~~~~~~~--------~~~~~~~~~l~f~a~iPplG~~ty~I~~~~~~ 466 (909)
|+|+|+++|+|+|..+.+.|+|.+|++|++|+++++.... .....+.++|+|.|+||||||++|.|......
T Consensus 561 L~~~r~~~V~v~v~~~~~~V~D~~G~~v~~Qi~~~~~~~~~~~~~~~~~~~~~~~~~L~f~a~vP~lG~~ty~i~~~~~~ 640 (1045)
T 3bvx_A 561 LPHWREQLVDFYVSSPFVSVTDLANNPVEAQVSPVWSWHHDTLTKTIHPQGSTTKYRIIFKARVPPMGLATYVLTISDSK 640 (1045)
T ss_dssp SSSCEEEEEEEEESCSCEEEEETTCCEECEEEEEEEEEEEETTTTEEEEEEEEEEEEEEEEEEECTTEEEEEEEEECSSC
T ss_pred CCCCEEEEEEEEECCCCEEEECCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEEEECCCC
T ss_conf 98502269999951686699828989875899632344443111124455778727999980138853699999836876
Q ss_pred CCCCCCCEEEECCCCCCCCCCCCCCCC--CCCCEEEEEECEE------EEEEECCCCEEEEEEC-CCCCEEEEEEEEEEE
Q ss_conf 676764203324899887899985446--7886048740629------9999666760799982-379167999999972
Q 002547 467 CDKAKPVKLKYSSDNSFSCPTPYACSK--IEGDVADIRNRHQ------ILSFDVRHGLLQKISH-INGSQNVVEEEIDMY 537 (909)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~IeN~~~------~i~fd~~~G~l~si~~-k~g~~~~v~~~f~~Y 537 (909)
.....++.+..-. ..+.++.... ...+...|||++| +|+||. +|.|++|.+ ++|++..+.++|.+|
T Consensus 641 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~leN~~~~~~~~~~v~fd~-~G~L~si~dk~~g~e~~~~~~f~~Y 715 (1045)
T 3bvx_A 641 PEHTSYASNLLLR----KNPTSLPLGQYPEDVKFGDPREISLRVGNGPTLAFSE-QGLLKSIQLTQDSPHVPVHFKFLKY 715 (1045)
T ss_dssp CTTEEECEEEEEC----SSCCCCCCTTCSSCCEEECCCCEEEECTTSCEEEECT-TSCEEEEECSTTSCCEEEEEEEEEE
T ss_pred CCCCCCCCEEECC----CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCEEEECC-CCCEEEEEECCCCEEEEEEEEEEEE
T ss_conf 5544432200013----5664221234566777425504522156653799878-8867999974798188776678887
Q ss_pred CCC----CCCEEEECCCCCCCCCCCCCCEEEEEECCCEEEEEEEECCCCCCCCEEEEEEEECCCCCCCEEEEEEEEEEEE
Q ss_conf 059----9841699159999875358936999968816899992135656886699999842888641137999999730
Q 002547 538 SSQ----GSGAYLFMPNGDAHPITEAGGLMVISKGPLMEEAYSYPRTAWERSPISHSTRLYNGNNMIQEFLIEKEYHVEL 613 (909)
Q Consensus 538 ~~~----~sGAYiF~P~~~~~~~~~~~~~i~v~~G~l~~ei~~~~~~~~~~~~i~q~irLy~~~~~~~~~~ie~e~~Vd~ 613 (909)
.+. .||||+|+|++.+.++....+.+.+++|||+++|++.+ .+++|++|| +.+ +||++|+|++
T Consensus 716 ~~~~~~~~sgaY~F~P~~~~~~~~~~~~~~~v~~Gpl~~ev~~~~------~~i~q~irL--~~~-----~ieie~~Vd~ 782 (1045)
T 3bvx_A 716 GVRSHGDRSGAYLFLPNGPASPVELGQPVVLVTKGKLESSVSVGL------PSVVHQTIM--RGG-----APEIRNLVDI 782 (1045)
T ss_dssp CBCSSSCCCCSSCCCBSSSCEECCCCSCCEEEEECSSCEEEEEEE------TTEEEEEEE--SSS-----SCEEEEEECC
T ss_pred ECCCCCCCCCCEEECCCCCCCCCCCCCCEEEEEECCEEEEEEEEE------EEEEEEEEE--CCE-----EEEEEEEEEC
T ss_conf 256689988613765798876534688459999688689999997------259999998--991-----2899999935
Q ss_pred ECCCCCCCEEEEEEEEEECCCCEEEECCCCCCCEECCCCCCCCCCCCEECCCCEEEEECCCCCEEEEEECCCCCEEECCC
Q ss_conf 01788894499999974079975997079973100366899987665221376178751887524796226552010479
Q 002547 614 LSHNFNDRELIVRYKTDIDNKRIFYSDLNGFQMSRRETYDKIPLQGNYYPMPALAFMQGSNGQRFSVHSRQSLGVASLKD 693 (909)
Q Consensus 614 ~~~~~~~~ei~~rf~t~i~s~~~fytD~nG~~~i~R~~~~~~pv~~nyYP~~s~~~i~D~~~~~ltvltd~~~G~ssl~~ 693 (909)
.+ ..|||+++||+|+|+|++.||||+|||++++|++..++|+++|||||+++|+|+|++ .||+||+||++||||+++
T Consensus 783 ~~--~~~~el~~rf~t~i~s~~~fyTD~nG~~~ikR~~~~~~p~~~NyYPv~s~~~i~D~~-~~ltvl~drs~G~sSl~~ 859 (1045)
T 3bvx_A 783 GS--LDNTEIVMRLETHIDSGDIFYTDLNGLQFIKRRRLDKLPLQANYYPIPSGMFIEDAN-TRLTLLTGQPLGGSSLAS 859 (1045)
T ss_dssp TT--CTTEEEEEEEEECCCCTTEEEEEETTTEEEEEECCTTSCGGGGCEEESSEEEEECSS-EEEEEEESSCEEEECCST
T ss_pred CC--CCCEEEEEEEECCCCCCCEEEEECCCCEEEECCCCCCCCCCCCEEEEEEEEEEECCC-EEEEEEECCCCCCCCCCC
T ss_conf 78--887489999445657887389926886368757788887314168741368997598-269999567766665679
Q ss_pred CEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEECCCCC
Q ss_conf 85999993104576898979675567411179999994056777656788865682033332101224752143215887
Q 002547 694 GWLEIMLDRRLSRDDGRGLGQGVLDNRAMNVVFHILVESNISSTSNSISKPLTLSPSLLSHLTGAHLNYPLHAFISKKPQ 773 (909)
Q Consensus 694 G~iEiml~Rrl~~DD~rGvge~l~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~p~~~~~~~~~~ 773 (909)
|+||||||||+++||+|||||||+|+.++..+|+|+++............+..+ |++++|..++.|++|+++|+.+...
T Consensus 860 G~lElmlhRrl~~DD~rGvge~l~d~~~~~~~~~l~l~~~~~~~~~~~~~~~~~-~s~~~~~~~~~l~~p~~~~~~~~~~ 938 (1045)
T 3bvx_A 860 GELEIMQDRRLASDDERGLGQGVLDNKPVLHIYRLVLEKVNNCVRPSKLHPAGY-LTSAAHKASQSLLDPLDKFIFAENE 938 (1045)
T ss_dssp TEEEEEEEEEBCSCCSSSCCSCBCCCCCEEEEEEEEEEECTTSCCCCTTCSEEC-CCHHHHHHHHHHHSCCEEEEECSSC
T ss_pred CEEEEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCCCCCCCCCCC-CCHHHHHHHHHHHCCCCEEECCCCC
T ss_conf 758999966412577655466666774000489999825654454454565444-5788999998873974533525766
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHC
Q ss_conf 77679999876888789998527985223799988789998662478888630565322379874110256343475422
Q 002547 774 ELSVQPPPRSFSPLAGSLPCDLHIVNFKVPRPSKYSQQSPDDSRFVLILQRRYWDSSYCRKGRSQCVSVVDEPLNLFSMF 853 (909)
Q Consensus 774 ~~~~~~~~~~~s~l~~~lP~~vhLltl~~~~~~~~~~~~~~~~r~~~ll~~~~~d~~~~~~~~~~~~~~~~~~v~l~~lf 853 (909)
......+|+++..+|||||||||||++.+... ...+++++|||.+++|+.+.. +.+++|+|++||
T Consensus 939 ---~~~~~~~~~~l~~~lP~~vhlltL~~~~~~~~-----~~~~~ll~L~~~~~~~~~~~~-------s~~~~~~l~~lf 1003 (1045)
T 3bvx_A 939 ---WIGAQGQFGGDHPSAREDLDVSVMRRLTKSSA-----KTQRVGYVLHRTNLMQCGTPE-------EHTQKLDVCHLL 1003 (1045)
T ss_dssp ---CTTBCSEECTTSCCCCTTEEEEEEEECSCTTC-----SEEEEEEEEEECCCCCCSCCC-------CCCCCCCGGGSS
T ss_pred ---CCCCCCCCCCCCCCCCCCEEEEEEEECCCCCC-----CCCEEEEEEEEECCCCCCCCC-------CCCCCCCHHHHH
T ss_conf ---43234567854446998779997576588986-----674189998640221476755-------676622399973
Q ss_pred CCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCEEEEEEEEEEE
Q ss_conf 458502588723547323346468887656888998358536422489999854
Q 002547 854 KGLAILNAKATSLNLLNDDIGMLGYPEQLEDVSQDGQVTIAPMEIQAYKLEMRP 907 (909)
Q Consensus 854 ~~~~v~~~~e~sL~~~~~~~~~~~~~~~~~~~~~~~~v~l~Pmeirtf~~~~~~ 907 (909)
+. |.+++||||++++...+.. ....|+|+|||||||+|+|++
T Consensus 1004 ~~--i~~~~etsL~~~~~~~~~~----------~~~~v~l~PmeirTf~i~~~~ 1045 (1045)
T 3bvx_A 1004 PN--VARCERTTLTFLQNLEHLD----------GMVAPEVCPMETAAYVSSHSS 1045 (1045)
T ss_dssp SS--EEEEEEECTTSCSEEEECG----------GGCCCCCCTTCEEEEEEEEEC
T ss_pred CC--CCEEEEECCCCCCCCCCCC----------CCCCEEECCCEEEEEEEEEEC
T ss_conf 47--3539994443776564447----------876168717644899999609
No 2
>2wyh_A Alpha-mannosidase; hydrolase, glycosidase, glycoside hydrolase; 1.90A {Streptococcus pyogenes} PDB: 2wyi_A*
Probab=1.00 E-value=1 Score=839.15 Aligned_cols=708 Identities=16% Similarity=0.175 Sum_probs=527.9
Q ss_pred CHHHHHHHHHCCCCCCCCEECCCCCCCHHHHHHHHHCCCCEEEEEECC----HHHH---HHHHHCCCEEEEEEECCCCCC
Q ss_conf 911558884409997720334999998578999998498607896068----8889---998532764899963799999
Q 002547 1 MEGNMWLNDTIGFIPKNSWAIDPFGYSATMAYLLRRMGFENMLIQRTH----YELK---KELALHQNLEYIWRQSWDTEE 73 (909)
Q Consensus 1 t~Gh~~l~~~fG~~p~vgW~iDpFGhS~~~p~Ll~~~G~~~~v~~Ri~----~~~k---~~~~~~k~leF~Wr~~~~~~~ 73 (909)
++||+|+++ ||+.|++||+|||||||++||+||++|||++++|+|++ |++| ..+...+.+||+|+|+ +
T Consensus 127 ~~G~~~~~~-fG~~~~~~w~pD~FG~s~~lPqil~~~Gi~~~~~~R~~~~~~~n~~~~~~~~~~~~~~eF~W~g~----d 201 (923)
T 2wyh_A 127 LIGKEDCDR-WGASVPLGYFPDTFGNMGQTPQLMLKAGLQAAAFGRGIRPTGFNNQVDTSEKYSSQFSEISWQGP----D 201 (923)
T ss_dssp HHHHHHHHH-HTCCCSSEEESSCSSBCTTHHHHHHTTTCCEEEECSSCEECCSSSCCCTTCTTEESSSEEEEECT----T
T ss_pred HHHHHHHHH-CCCCCCEEEECCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCHHHCCCCCCEEEEECC----C
T ss_conf 999999998-19997624814899862689999997699789997023532233222211211588855999889----9
Q ss_pred CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEE
Q ss_conf 98627830798755899877999961001221235875334698888998799223999999999999861244567849
Q 002547 74 TSDIFVHMMPFYSYDIPHTCGPEPAVCCQFDFARMGGFFYEACPWRQNPVETNQENVQERALKLLDQYKKKSTLYRTNTL 153 (909)
Q Consensus 74 ~s~ifth~l~~y~Y~~p~~c~p~~~~c~~fDf~~~~g~~~~~~~~~~~p~~i~~~nv~~r~~~l~~~~~~~a~~~~tn~i 153 (909)
|++||||+|| ++|+. |. +.+++++|++.+++.+++..++ .++++++
T Consensus 202 Gs~Ilt~~~p-~~Y~~----g~--------------------------~~~~~~~~v~~~~~~~~~~~~~---~~~t~~~ 247 (923)
T 2wyh_A 202 NSRILGLLFA-NWYSN----GN--------------------------EIPTTEAEARLFWDKKLADAER---FASTKHL 247 (923)
T ss_dssp CCEEEEEECT-TCTTT----TC--------------------------SCCSSHHHHHHHHHHHHHHHHH---HCSSSEE
T ss_pred CCEEEEEECC-CCCCC----CC--------------------------CCCCCHHHHHHHHHHHHHHHHH---CCCCCEE
T ss_conf 9828999777-77668----98--------------------------7998989999999999999985---4888709
Q ss_pred EEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCC-CCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 997039989998124899999699999999339-9973389948978999999997510247899877899767897623
Q 002547 154 LVPLGDDFRYTTINEAEAQFRNYQLLFDYINSN-PSLNAEAKFGTLDDYFRTLREEADRINYSRPGEIGSGQVEGFPSLS 232 (909)
Q Consensus 154 l~p~G~Df~y~~~~~a~~~f~n~~kli~~iN~~-~~~~~~i~~sT~~dYf~al~~~~~~~~~~~~~~~~~~~~~~~p~~~ 232 (909)
|+|+|+||+|.. +||+++|+++|+. + +++++|||++|||++|+++. ...||+++
T Consensus 248 l~~~G~D~~~~~--------~~~~~~i~~~n~~~~--~~~~~~sT~~~yf~~l~~~~---------------~~~lp~~~ 302 (923)
T 2wyh_A 248 LMMNGCDHQPVQ--------LDVTKAIALANQLYP--DYEFVHSCFEDYLADLADDL---------------PENLSTVQ 302 (923)
T ss_dssp EEEECCBTCCCC--------TTHHHHHHHHHHHCT--TEEEEECCHHHHHHHHHHHS---------------CSCCCEEE
T ss_pred EEEEECCCCCCC--------HHHHHHHHHHHHHCC--CCEEEECCHHHHHHHHHHHC---------------CCCCCEEC
T ss_conf 999603989863--------429999999985489--85599879999999987652---------------25685430
Q ss_pred CCCCCCCCCCCCCE---EEEECCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf 87313545689763---688326210346889998999-99999999985001233336686146899999999965321
Q 002547 233 GDFFTYADRQQDYW---SGYYVSRPFFKAVDRVLEQTL-RATEMMVALLLGYCQRAQCEKLPMSFAYKLTAARRNLALFQ 308 (909)
Q Consensus 233 gDffpya~~~~~yW---tGyyTSRp~~K~~~R~~e~~L-~~aE~L~sla~~~~~~~~~~~~~~~~~~~l~~a~~~l~l~Q 308 (909)
||||.+.+ .+| +|||||||++|+++|++|++| |+||+|+++|... +..|| .+.|+.+||+|+++|
T Consensus 303 GEl~~~~~---~~W~th~G~~tSr~~~K~~nR~~E~~L~~~aE~l~~la~~~-----g~~yp---~~~L~~~Wk~ll~~Q 371 (923)
T 2wyh_A 303 GEITSQET---DGWYTLANTASARIYLKQANTRVSRQLENITEPLAAMAYEV-----TSTYP---HDQLRYAWKTLMQNH 371 (923)
T ss_dssp SCBSCTTS---CSSSSCGGGGGTTHHHHHHHHHHHHHHHHTHHHHHHHHHHH-----HSCCC---HHHHHHHHHHHHTTC
T ss_pred CCCCCCCC---CCCEECCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----CCCCC---HHHHHHHHHHHHCCC
T ss_conf 34457555---66211488852689999999999999999999999999972-----88886---689999999975627
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEE
Q ss_conf 24676788614578759999999999999999999999960433456788764410102436788840376405886249
Q 002547 309 HHDGVTGTAKDHVVLDYGTRMHTSLQDLQIFMSKAIEVLLGIRERYDQNLSQFEPEQVRSKYDAQPVHKVINVHEGTSQS 388 (909)
Q Consensus 309 hHDaItGTsk~~V~~Dy~~rL~~~~~~~~~v~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (909)
|||+||||++++|++||..||..+.+.+..++..+++.|+..... + ....+...
T Consensus 372 ~HD~i~Gts~~~V~~d~~~~~~~~~~~~~~l~~~al~~l~~~~~~----------------------~----~~~~~~~~ 425 (923)
T 2wyh_A 372 PHDSICGCSVDSVHREMMTRFEKAYEVGHYLAKEAAKQIADAIDT----------------------R----DFPMDSQP 425 (923)
T ss_dssp BHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTBCC----------------------T----TSCTTSEE
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC----------------------C----CCCCCCEE
T ss_conf 876757758779999999999999999999999999999744566----------------------6----67888408
Q ss_pred EEEECCCCCCEEEEEEEEEC-------------------------CCCEEEECCCCEEEE-EEECCCCCC-------CCC
Q ss_conf 99992876523599999975-------------------------895799927980865-630134125-------875
Q 002547 389 VVIFNPLEQTREEIVMVIVN-------------------------RPDITVLDSNWTCVQ-SQISPELRH-------GKS 435 (909)
Q Consensus 389 vvvyNpL~~~r~~~V~i~v~-------------------------~~~~~V~d~~G~~v~-~Qi~~~~~~-------~~~ 435 (909)
++|||||+|+|+++|+++|. .+.+.|+|.+|++|+ +|+++.+.. .+.
T Consensus 426 vvvfN~l~~~r~~vV~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~G~~v~~~qi~~~~~~~~~~~~~~~~ 505 (923)
T 2wyh_A 426 FVLFNTSGHSKTSVAELSLTWKKYHFGQRFPKEVYQEAQEYLARLSQSFQIIDTSGQVRPEAEILGTSIAFDYDLPKRSF 505 (923)
T ss_dssp EEEEECSSSCEEEEEEEEEEEEEEECTTSCHHHHHHHHHHHHHTCCSEEEEECTTCCBCTTCEEEEEEEEEEEECCSSSC
T ss_pred EEEECCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCHHHHHHCCCCCCEEEECCCCCEECCEEEEECCCCCCCCCCCCCC
T ss_conf 99994999647589999997253332223432110000112103678779997998995519998512344422555566
Q ss_pred --CCCCCCEEEEEEEEECCCCEEEEEEEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEEEECEEEEEEECC
Q ss_conf --333671799999940888149999994866767676420332489988789998544678860487406299999666
Q 002547 436 --KIFTGRHRLHWKATIPALGLQVYYIANGFVGCDKAKPVKLKYSSDNSFSCPTPYACSKIEGDVADIRNRHQILSFDVR 513 (909)
Q Consensus 436 --~~~~~~~~l~f~a~iPplG~~ty~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IeN~~~~i~fd~~ 513 (909)
.....++++.|.++||||||++|.|....... ..... ... ..++.+|||++++|+||.
T Consensus 506 ~~~~~~~~~~l~f~a~vP~lG~~~~~i~~~~~~~----~~~~~--------------~~~-~~~~~~leN~~~~v~~d~- 565 (923)
T 2wyh_A 506 REPYFAIKVRLRLPITLPAMSWKTLALKLGNETT----PSETV--------------SLY-DDSNQCLENGFLKVMIQT- 565 (923)
T ss_dssp CEEEEEEEEEEEEEEEECTTEEEEEEEEEEC----------CC--------------CSE-ETTTTEEECSSEEEEECT-
T ss_pred CCCCCEEEEEEEEEEECCCCCEEEEEEEECCCCC----CCCCC--------------CCC-CCCCCEEECCEEEEEEEC-
T ss_conf 5653103699999997387500899999888766----66531--------------013-678725756808999908-
Q ss_pred CCEEEEEEC-CCCCEEEEEEEEEEEC--CCCCCEEEECCCCCCCCCC--CCCCEEEEEE-CCCEEEEEEEECC-------
Q ss_conf 760799982-3791679999999720--5998416991599998753--5893699996-8816899992135-------
Q 002547 514 HGLLQKISH-INGSQNVVEEEIDMYS--SQGSGAYLFMPNGDAHPIT--EAGGLMVISK-GPLMEEAYSYPRT------- 580 (909)
Q Consensus 514 ~G~l~si~~-k~g~~~~v~~~f~~Y~--~~~sGAYiF~P~~~~~~~~--~~~~~i~v~~-G~l~~ei~~~~~~------- 580 (909)
+|.+ ++.+ ++|+++. +|..|. ++.||||+|+|++.++++. .....+.++. ||++++|++.+..
T Consensus 566 ~G~l-si~dk~~gr~~~---~~~~y~d~~d~~day~f~p~~~~~~~~~~~~~~~i~v~~~gpl~~~v~~~~~~~vP~~~~ 641 (923)
T 2wyh_A 566 DGRL-TITDKQSGLIYQ---DLLRFEDCGDIGNEYISRQPNHDQPFYADQGTIKLNIISNTAQVAELEIQQTFAIPISAD 641 (923)
T ss_dssp TSCE-EEEETTTCCEEE---EESEEEEEECCSCSSCCCCCTTCCCEEGGGSEEEEEEEEECSSEEEEEEEEEEEEESSBC
T ss_pred CCCE-EEEECCCCEEEE---EEEEEEECCCCCCEEEEECCCCCCEEECCCCCCEEEEEECCCCEEEEEEEEEECCCCCCH
T ss_conf 9878-999978993988---889996059988706887688873033167874699998688779999999863774301
Q ss_pred ----------------CCCCC------CEEEEEEEECCCCCCCEEEEEEEEEEEEECCCCCCCEEEEEEEEEECCCCEEE
Q ss_conf ----------------65688------66999998428886411379999997300178889449999997407997599
Q 002547 581 ----------------AWERS------PISHSTRLYNGNNMIQEFLIEKEYHVELLSHNFNDRELIVRYKTDIDNKRIFY 638 (909)
Q Consensus 581 ----------------~~~~~------~i~q~irLy~~~~~~~~~~ie~e~~Vd~~~~~~~~~ei~~rf~t~i~s~~~fy 638 (909)
..+.+ +++|+++||++++ +|||+++|||++ .+|+++++|+|+|.++..+|
T Consensus 642 ~~L~~~~~~~~~~~~r~~~~s~~~~~~~i~q~i~L~~~~~-----~ie~~~~vd~~~---~~~~l~v~fpt~i~s~~~~~ 713 (923)
T 2wyh_A 642 KLLQAEMEAVIDITERQARRSQEKAELTLTTLIRMEKNNP-----RLQFTTRFDNQM---TNHRLRVLFPTHLKTDHHLA 713 (923)
T ss_dssp THHHHHHHTTCCGGGCCCCBCSCEEEEEEEEEEEEETTCS-----CEEEEEEEEECC---CSEEEEEEEECCCCCSEEEE
T ss_pred HHHCCCCCCCCCHHHHHHCCCCCCCCEEEEEEEEEECCCC-----EEEEEEEECCCC---CCEEEEEEECCCCCCCCEEE
T ss_conf 2210111122201334423466666458999999928996-----589999988733---89899999015537897799
Q ss_pred ECCCCCCCEECCCCCCC---CCCCCEECCCCEEEEECCCCCEEEEEECCCCCEEEC-CCCEEEEEEEECC--CCCCCCCC
Q ss_conf 70799731003668999---876652213761787518875247962265520104-7985999993104--57689897
Q 002547 639 SDLNGFQMSRRETYDKI---PLQGNYYPMPALAFMQGSNGQRFSVHSRQSLGVASL-KDGWLEIMLDRRL--SRDDGRGL 712 (909)
Q Consensus 639 tD~nG~~~i~R~~~~~~---pv~~nyYP~~s~~~i~D~~~~~ltvltd~~~G~ssl-~~G~iEiml~Rrl--~~DD~rGv 712 (909)
| |||++++|++..+. ..++||||+.++++|+|.+ .+++|+||+++|++++ .+|+|+|||+|++ +.| +|+
T Consensus 714 -d-~~fg~i~R~~~~~~~~w~~a~~~~p~~~~v~l~d~~-~gvavlnd~~~g~~~~~~~~~i~LtLlRs~~~lg~--~G~ 788 (923)
T 2wyh_A 714 -D-SIFETVKRPNHPDATFWKNPSNPQHQECFVSLFDGE-NGVTIGNYGLNEYEILPDTNTIAITLLRSVGEMGD--WGY 788 (923)
T ss_dssp -E-ETTEEEEEESSCCTTTCCCSCCCEECSSEEEEECSS-EEEEEEESSCCEEEEETTTTEEEEEEEEECSBCCT--TSC
T ss_pred -E-CCCEEEECCCCCCCCCCCCCCCEEEEEEEEEEECCC-CCEEEEECCCCCEEEECCCCEEEEEEECCCCCCCC--CCC
T ss_conf -4-586389826878777765666417422399998798-76899858965368866898499998136532366--776
Q ss_pred CCCCCCCC-CEEEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 96755674-11179999994056777656788865682033332101224752143215887776799998768887899
Q 002547 713 GQGVLDNR-AMNVVFHILVESNISSTSNSISKPLTLSPSLLSHLTGAHLNYPLHAFISKKPQELSVQPPPRSFSPLAGSL 791 (909)
Q Consensus 713 ge~l~d~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~p~~~~~~~~~~~~~~~~~~~~~s~l~~~l 791 (909)
+|..+.. .....|.+-+.+-.. . . .. ........++.|+..+...... ......++.+.. -
T Consensus 789 -~p~p~a~~~G~h~f~yal~~~~g-~-------~---~~-~~~~~a~~~~~Pl~~~~~~~~~----~~~~~~~s~l~~-~ 850 (923)
T 2wyh_A 789 -FPTPEAQCLGKHSLSYSFESITK-Q-------T---QF-ASYWRAQEGQVPVITTQTNQHE----GTLAAEYSYLTG-T 850 (923)
T ss_dssp -CBCGGGGCCEEEEEEEEEEEEET-T-------T---HH-HHHHHHHHTTSCCEEEECCSCC----CSBCSEEESCBC-C
T ss_pred -CCCCHHHHCEEEEEEEEECCCCC-C-------H---HH-HHHHHHHHHHCCHHHEECCCCC----CCCCCCCCCEEC-C
T ss_conf -36833574127999999711688-6-------4---68-8999999873877513347665----767766653022-8
Q ss_pred CCCEEEEEEECCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCEEEECCCCCCCC
Q ss_conf 98527985223799988789998662478888630565322379874110256343475422458502588723547323
Q 002547 792 PCDLHIVNFKVPRPSKYSQQSPDDSRFVLILQRRYWDSSYCRKGRSQCVSVVDEPLNLFSMFKGLAILNAKATSLNLLND 871 (909)
Q Consensus 792 P~~vhLltl~~~~~~~~~~~~~~~~r~~~ll~~~~~d~~~~~~~~~~~~~~~~~~v~l~~lf~~~~v~~~~e~sL~~~~~ 871 (909)
|.+|+|.+|+...+. -.+|||..+... .. .+ .+.+ .+.+..+.++.|..-..
T Consensus 851 ~~~v~l~alK~aed~-----------~~~ilRl~n~~g-----~~-~~------~l~~-----~~~~~~~~~~~llE~~~ 902 (923)
T 2wyh_A 851 NDQVALTAFKRRLAD-----------NALITRSYNLSN-----DK-TC------DFSL-----SLPNYNAKVTNLLEKDS 902 (923)
T ss_dssp CTTEEEEEEEECTTT-----------CCEEEEEEESCS-----SC-CE------ECCC-----BCTTEEEEEECTTCCBC
T ss_pred CCCEEEEEEEECCCC-----------CCEEEEEECCCC-----CC-CE------EEEE-----CCCCCEEEEEECCCCCC
T ss_conf 997899998881689-----------948999724789-----85-31------7883-----26654399952457504
Q ss_pred CCCCCCCCCCCCCCCCCCCEEECCCEEEEEEEEEE
Q ss_conf 34646888765688899835853642248999985
Q 002547 872 DIGMLGYPEQLEDVSQDGQVTIAPMEIQAYKLEMR 906 (909)
Q Consensus 872 ~~~~~~~~~~~~~~~~~~~v~l~Pmeirtf~~~~~ 906 (909)
. .. ..+.|.|-||+||+++++
T Consensus 903 ~--~~------------~~~~l~p~ei~T~~l~~~ 923 (923)
T 2wyh_A 903 K--QS------------TPSQLGKAEILTLAWKKQ 923 (923)
T ss_dssp S--CC------------CCSEECTTCEEEEEEEEC
T ss_pred C--CC------------CCCEECCCCEEEEEEEEC
T ss_conf 5--46------------510176761489999959
No 3
>3lvt_A Glycosyl hydrolase, family 38; PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.55A {Enterococcus faecalis}
Probab=1.00 E-value=1 Score=755.06 Aligned_cols=713 Identities=15% Similarity=0.152 Sum_probs=505.8
Q ss_pred CHHHHHHHHHCCCCCCCCEECCCCCCCHHHHHHHHHCCCCEEEEEECC----HHHHHHH--HHCCCEEEEEEECCCCCCC
Q ss_conf 911558884409997720334999998578999998498607896068----8889998--5327648999637999999
Q 002547 1 MEGNMWLNDTIGFIPKNSWAIDPFGYSATMAYLLRRMGFENMLIQRTH----YELKKEL--ALHQNLEYIWRQSWDTEET 74 (909)
Q Consensus 1 t~Gh~~l~~~fG~~p~vgW~iDpFGhS~~~p~Ll~~~G~~~~v~~Ri~----~~~k~~~--~~~k~leF~Wr~~~~~~~~ 74 (909)
++||+|+++ ||+.|++||+|||||||+++|+||++|||++++|+|++ |+.++.. ...+.+||+|+|+ +|
T Consensus 108 ~~G~~~~~~-fG~~~~~~w~~D~FG~s~~lp~i~~~~Gi~~~~~~Rg~~~~~~~~~k~~~~~~~p~~~F~W~g~----dG 182 (899)
T 3lvt_A 108 LIGHLESQK-WGAPVQLGYFPDTFGNMGQTPQMMQLANLPAAAFGRGVKPIGFDNQVLESDYSSQYSEMWWEGP----DQ 182 (899)
T ss_dssp HHHHHHHHH-HTCCCCCEEESCCCT---THHHHHHTTTCCEEEEC---------------------CEEEEECT----TS
T ss_pred HHHHHHHHH-CCCCCCEEEECCCCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEECC----CC
T ss_conf 999999997-3999862372789987367999999769974999334454444431221124787746999779----99
Q ss_pred CCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEE
Q ss_conf 86278307987558998779999610012212358753346988889987992239999999999998612445678499
Q 002547 75 SDIFVHMMPFYSYDIPHTCGPEPAVCCQFDFARMGGFFYEACPWRQNPVETNQENVQERALKLLDQYKKKSTLYRTNTLL 154 (909)
Q Consensus 75 s~ifth~l~~y~Y~~p~~c~p~~~~c~~fDf~~~~g~~~~~~~~~~~p~~i~~~nv~~r~~~l~~~~~~~a~~~~tn~il 154 (909)
|+||||++|+ +|+. |. .. +.++++++.+++.+++..++ .++++++|
T Consensus 183 s~vlt~~~~~-~Y~~----g~-----------------------~~---p~~~~~~~~~~~~~~~~~~~---~~~t~~il 228 (899)
T 3lvt_A 183 TKIFGLLFAN-WYSN----GN-----------------------EI---PSEKEAAIAFWKQKLADVER---YASTNHLL 228 (899)
T ss_dssp CEEEEEECCC-C--------C-----------------------CS---CSSHHHHHHHHHHHHHHHHH---HCSSSEEE
T ss_pred CEEEEEECCC-CCCC----CC-----------------------CC---CCCHHHHHHHHHHHHHHHHH---HCCCCEEE
T ss_conf 8499997777-6767----66-----------------------79---87689999999999998875---06887189
Q ss_pred EEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 97039989998124899999699999999339997338994897899999999751024789987789976789762387
Q 002547 155 VPLGDDFRYTTINEAEAQFRNYQLLFDYINSNPSLNAEAKFGTLDDYFRTLREEADRINYSRPGEIGSGQVEGFPSLSGD 234 (909)
Q Consensus 155 ~p~G~Df~y~~~~~a~~~f~n~~kli~~iN~~~~~~~~i~~sT~~dYf~al~~~~~~~~~~~~~~~~~~~~~~~p~~~gD 234 (909)
+|+|+||.. +++||+++|+++|+... .+++++||+++||++|+++. ...||+++||
T Consensus 229 ~~~G~D~~p--------~~~~l~~~i~~~n~~~p-~~~~~~st~~~yf~~l~~~~---------------~~~lp~~~GE 284 (899)
T 3lvt_A 229 MMNGVDHQP--------VQRDITKAIALANELFP-EYEFIHSNFDDYLKAVQEEL---------------PEDLGTVTGE 284 (899)
T ss_dssp EEEEEC--------------CHHHHHHHHHHHCS-SEEEEECCHHHHHHHHHHTC---------------C--CCEEECC
T ss_pred EEECCCCCC--------HHHHHHHHHHHHHHCCC-CCEEEECCHHHHHHHHHHHC---------------CCCCCCCCCC
T ss_conf 954689996--------07889999999973099-85499769999999998752---------------2337724565
Q ss_pred CCCCCCCCCCCEE-EEECCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 3135456897636-883262103468899989999-99999999850012333366861468999999999653212467
Q 002547 235 FFTYADRQQDYWS-GYYVSRPFFKAVDRVLEQTLR-ATEMMVALLLGYCQRAQCEKLPMSFAYKLTAARRNLALFQHHDG 312 (909)
Q Consensus 235 ffpya~~~~~yWt-GyyTSRp~~K~~~R~~e~~L~-~aE~L~sla~~~~~~~~~~~~~~~~~~~l~~a~~~l~l~QhHDa 312 (909)
||++..+ ..||+ |||||||++|+++|++|++|+ +||+|+++|... +..|| .+.|+++|++|+++||||+
T Consensus 285 l~~~~~~-G~yt~~~~~sSr~~~K~~nR~~E~~L~~~aE~l~~la~~~-----g~~yp---~~~l~~~Wk~ll~~Q~HD~ 355 (899)
T 3lvt_A 285 LTSQETD-GWYTLANTSSARVYLKQWNTKVQRQLENIAEPLAAMAYEV-----TGDYP---HDQFDYAWKTLLQNHPHDS 355 (899)
T ss_dssp C------------CGGGGBTHHHHHHHHHHHHHHHTTHHHHHHHHHHH-----HSCCC---HHHHHHHHHHHHTTCSTTT
T ss_pred CCCCCCC-CEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----CCCCC---HHHHHHHHHHHHCCCCCCC
T ss_conf 1464458-6279778231279999999999999999999999999973-----78885---7999999999846378876
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEEEE
Q ss_conf 67886145787599999999999999999999999604334567887644101024367888403764058862499999
Q 002547 313 VTGTAKDHVVLDYGTRMHTSLQDLQIFMSKAIEVLLGIRERYDQNLSQFEPEQVRSKYDAQPVHKVINVHEGTSQSVVIF 392 (909)
Q Consensus 313 ItGTsk~~V~~Dy~~rL~~~~~~~~~v~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvvy 392 (909)
||||++++|++||..||..+++.++.++..+++.|+..... +. .. .+...++||
T Consensus 356 i~Gtsi~~V~~d~~~~~~~~~~~~~~l~~~al~~l~~~~~~-------------------~~------~~-~~~~~v~vf 409 (899)
T 3lvt_A 356 ICGCSVDEVHRGMMTRFENANDVGHFLADEATRQLTEAIDT-------------------SV------FP-EKAHPFVLF 409 (899)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTBCC-------------------TT------SC-TTCEEEEEE
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-------------------CC------CC-CCCCEEEEE
T ss_conf 67758679999999999999999999999999999851566-------------------66------77-788779999
Q ss_pred CCCCCCEEEEEEEEECC----------------------CCEEEECCCCEEEEEEECCCCCCC-----C----CCCCCCC
Q ss_conf 28765235999999758----------------------957999279808656301341258-----7----5333671
Q 002547 393 NPLEQTREEIVMVIVNR----------------------PDITVLDSNWTCVQSQISPELRHG-----K----SKIFTGR 441 (909)
Q Consensus 393 NpL~~~r~~~V~i~v~~----------------------~~~~V~d~~G~~v~~Qi~~~~~~~-----~----~~~~~~~ 441 (909)
|||+|+|+++|+|++.. +.+.|.|.+|++||+|+++..... . .......
T Consensus 410 N~l~~~r~~~V~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~G~~v~~qv~~~~~~~~~~l~~~~~~~~~~~~~ 489 (899)
T 3lvt_A 410 NTSGYQKTEVVTVEVEIERLPFYTGKPEDLYHELKQKATPDYQVIDPTGKAVASRIVKEDVRFGYDLPKDAFRQPYMAKY 489 (899)
T ss_dssp ECSSSCEEEEEEEEEEEEEEEGGGSCHHHHHHHHHHSCCCCEEEECSSSCEECCEEEEEEEEEEECCC-----CEEEEEE
T ss_pred ECCCCEEEEEEEEEEECCCCCCCCCCCHHHHHHHCCCCCCCEEEECCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCE
T ss_conf 29996032699999872544323345101100000136785499989999974899514542123356554455431214
Q ss_pred EEEEEEE-EECCCCEEEEEEEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEEEECEEEEEEECCCCEEEEE
Q ss_conf 7999999-408881499999948667676764203324899887899985446788604874062999996667607999
Q 002547 442 HRLHWKA-TIPALGLQVYYIANGFVGCDKAKPVKLKYSSDNSFSCPTPYACSKIEGDVADIRNRHQILSFDVRHGLLQKI 520 (909)
Q Consensus 442 ~~l~f~a-~iPplG~~ty~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IeN~~~~i~fd~~~G~l~si 520 (909)
+.|.|.+ +||||||++|.|........ .. . . ....+...|||++|+|+||. +|.| +|
T Consensus 490 ~~l~f~a~~vPalGy~~~~i~~~~~~~~--~~---------------~--~-~~~~~~~~leN~~~~v~~d~-~G~l-sl 547 (899)
T 3lvt_A 490 LTVELSVKEMAPFSWDSFALIQGETKAF--EG---------------S--L-LAQPATNEMENEFIQVKIEN-NGSL-TI 547 (899)
T ss_dssp EEEEEEEEEECTTEEEEEEEEESCCCCC--CS---------------C--C-SEETTTTEEECSSEEEEECT-TSCE-EE
T ss_pred EEEEEEECCCCCCCCEEEEEEECCCCCC--CC---------------C--C-CCCCCCCEEECCCEEEEECC-CCCE-EE
T ss_conf 8999994677877777999984676665--43---------------2--1-23566737745738999948-9848-99
Q ss_pred EC-CCCCEEEEEEEEEEEC--CCCCCEEEECCCCCCCCCCCCC--CEEEE-EECCCEEEEEEEECC--------------
Q ss_conf 82-3791679999999720--5998416991599998753589--36999-968816899992135--------------
Q 002547 521 SH-INGSQNVVEEEIDMYS--SQGSGAYLFMPNGDAHPITEAG--GLMVI-SKGPLMEEAYSYPRT-------------- 580 (909)
Q Consensus 521 ~~-k~g~~~~v~~~f~~Y~--~~~sGAYiF~P~~~~~~~~~~~--~~i~v-~~G~l~~ei~~~~~~-------------- 580 (909)
.+ ++|+++. ++.+|. ++.|++|+|+|+..+.++.... ..+.+ .+||++++|++.+..
T Consensus 548 ~Dk~~gre~~---~~~~~~d~gd~g~~Y~~~p~~~d~~~~~~~~~~~v~v~e~gpl~~~v~v~~~~~~P~~~~~~~~~~~ 624 (899)
T 3lvt_A 548 ADKKTGETFS---KLLTFEDTGDIGNEYIFFKPTEDQGITTENVTAEITNKENSPVKASYQIKQTVMLPVAADERLEEEQ 624 (899)
T ss_dssp EETTTCCEEE---EETEEEEEECCSBTTBCCCCTTCCCEESTTCCCEEEEEEECSSEEEEEEEEEEEEESSBCTHHHHHH
T ss_pred EECCCCEEEE---EEEEEECCCCCCCCEEECCCCCCCEEECCCCCCEEEEEECCCCEEEEEEEEEECCCCCHHHHHCCCC
T ss_conf 9988990998---7789953788788436558767822444677733999975888899999999815643123210000
Q ss_pred ---------CCCCC------CEEEEEEEECCCCCCCEEEEEEEEEEEEECCCCCCCEEEEEEEEEECCCCEEEECCCCCC
Q ss_conf ---------65688------669999984288864113799999973001788894499999974079975997079973
Q 002547 581 ---------AWERS------PISHSTRLYNGNNMIQEFLIEKEYHVELLSHNFNDRELIVRYKTDIDNKRIFYSDLNGFQ 645 (909)
Q Consensus 581 ---------~~~~~------~i~q~irLy~~~~~~~~~~ie~e~~Vd~~~~~~~~~ei~~rf~t~i~s~~~fytD~nG~~ 645 (909)
..+.+ +++|+++||++++ +|||+++|||.+ .+|+++++|+|+|.++.++|+ .+|+
T Consensus 625 ~~~~~~~~r~~~~S~~~~~~~i~q~i~L~~~~~-----~id~~~~Vdw~~---~~~~Lrv~Fp~~i~s~~~~~d--~~fG 694 (899)
T 3lvt_A 625 KAVREFRERLAQRSTTLRPFEITTMVTMIKESN-----QLFFETTINNQI---KDHRLRVLFPTGMVTETHEAD--SIYE 694 (899)
T ss_dssp HTTCCGGGCCCCBCSCEEEEEEEEEEEEETTCC-----CEEEEEEEEECC---CSEEEEEEECCSCCCSEEEEE--CSSS
T ss_pred CCCCCCHHHHHCCCCCCCCEEEEEEEEEECCCC-----EEEEEEEECCCC---CCEEEEEECCCCCCCCCEEEE--CCCE
T ss_conf 111100012204565555168999999937997-----799999987875---898999988787776855884--2646
Q ss_pred CEECCCCCCC--CCCCCEECCCCEEEEECCCCCEEEEEECCCCCEEECCCCEEEEEEEECCCCCCCCCC-CCCCCCCCCE
Q ss_conf 1003668999--876652213761787518875247962265520104798599999310457689897-9675567411
Q 002547 646 MSRRETYDKI--PLQGNYYPMPALAFMQGSNGQRFSVHSRQSLGVASLKDGWLEIMLDRRLSRDDGRGL-GQGVLDNRAM 722 (909)
Q Consensus 646 ~i~R~~~~~~--pv~~nyYP~~s~~~i~D~~~~~ltvltd~~~G~ssl~~G~iEiml~Rrl~~DD~rGv-ge~l~d~~~~ 722 (909)
+++|++..+. ..++++||+.+++.|.|.+ .+++|+||+++|++++.+|.|+|||+|+.-.-=..|+ ..|-.|- ..
T Consensus 695 ~i~Rpt~~~t~We~a~~e~~~~~~vdlsd~~-~Gvavlnd~~~gy~v~~d~~i~LTLlRs~g~lG~~g~~p~Pda~~-~G 772 (899)
T 3lvt_A 695 VVTRPNQVSDTWENPTNPQHQQAFVNVHDQN-KGVTIFNEGLNEYEVLADGTIAVTLIRCVGELGDWGYFATPEAQC-QG 772 (899)
T ss_dssp EEEEEC-------CCCCCEECSSEEEEECSS-CEEEEEESSCCEEEECTTCCEEEEEEEECSBCCTTSCCBCGGGGC-CE
T ss_pred EEECCCCCCCCCCCCCCCEEEEEEEEEECCC-CEEEEEECCCCCEEECCCCEEEEEEECCCCCCCCCCCCCCCCHHH-HC
T ss_conf 9987899976665787653101499986698-249999689754357679879999841467655467758966365-18
Q ss_pred EEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEC
Q ss_conf 17999999405677765678886568203333210122475214321588777679999876888789998527985223
Q 002547 723 NVVFHILVESNISSTSNSISKPLTLSPSLLSHLTGAHLNYPLHAFISKKPQELSVQPPPRSFSPLAGSLPCDLHIVNFKV 802 (909)
Q Consensus 723 ~~~~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~p~~~~~~~~~~~~~~~~~~~~~s~l~~~lP~~vhLltl~~ 802 (909)
.+.|.+-+.+-.. ... ..- .......++.|+..+...... ......+|.+. --+.+|.|-+++.
T Consensus 773 ~h~F~yal~ph~g-~~~---------~~~-~~~~a~~~n~pl~~~~~~~~~----~~l~~~~s~~~-~~~~~v~lsavK~ 836 (899)
T 3lvt_A 773 EYTFKYGLSLHGK-PEE---------RFA-TYQQAYSAQIPFTAATTARHE----GKLAPNHVYLT-TAEGPIGWTAVKR 836 (899)
T ss_dssp EEEEEEEEEEESS-GGG---------HHH-HHHHHHHHTSCCEEEECCSCC----CSBCSEEESEE-CCCSSEEEEEEEE
T ss_pred CEEEEEEEEECCC-CCH---------HHH-HHHHHHHHCCCCCEEECCCCC----CCCCCCCCCEE-ECCCCEEEEEEEE
T ss_conf 5699999995479-712---------548-999999864984224426566----76777666436-4799899999886
Q ss_pred CCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 79998878999866247888863056532237987411025634347542245850258872354732334646888765
Q 002547 803 PRPSKYSQQSPDDSRFVLILQRRYWDSSYCRKGRSQCVSVVDEPLNLFSMFKGLAILNAKATSLNLLNDDIGMLGYPEQL 882 (909)
Q Consensus 803 ~~~~~~~~~~~~~~r~~~ll~~~~~d~~~~~~~~~~~~~~~~~~v~l~~lf~~~~v~~~~e~sL~~~~~~~~~~~~~~~~ 882 (909)
-.+. -++|+|.... .+. ..++.+. |. + +..+.++.|-.-....
T Consensus 837 aEd~-----------~~~IlRlye~------~g~-------~~~l~~~--~~-~-~~~~~~~nllE~~~~~--------- 879 (899)
T 3lvt_A 837 QEQT-----------NHLVVRGFNL------TAQ-------NIPCELH--KE-T-QPATCLTNVLEEPLTP--------- 879 (899)
T ss_dssp CTTT-----------CCEEEEEEEC------SSS-------CBCCCCE--ET-T-EECCEEECTTSCBCSS---------
T ss_pred EECC-----------CCEEEEEECC------CCC-------CEEEEEC--CC-C-CCCEEEECCCCCCCCC---------
T ss_conf 1439-----------9689999718------999-------6778974--47-6-5516880056665667---------
Q ss_pred CCCCCCCCEEECCCEEEEEEEE
Q ss_conf 6888998358536422489999
Q 002547 883 EDVSQDGQVTIAPMEIQAYKLE 904 (909)
Q Consensus 883 ~~~~~~~~v~l~Pmeirtf~~~ 904 (909)
.....+.+.|-||+|++++
T Consensus 880 ---~~~~~~~~~pfeI~T~~~~ 898 (899)
T 3lvt_A 880 ---AIEVDAPLRPFEIRTWRFE 898 (899)
T ss_dssp ---CCCTTSCBCTTCEEEEEEC
T ss_pred ---CCCEEEEECCCEEEEEEEE
T ss_conf ---8602442757058999970
No 4
>1o7d_D Lysosomal alpha-mannosidase; hydrolase, glycosyl hydrolase family 38; HET: NAG BMA MAN NDG; 2.70A {Bos taurus} SCOP: b.30.5.6
Probab=1.00 E-value=1 Score=446.76 Aligned_cols=250 Identities=25% Similarity=0.395 Sum_probs=217.3
Q ss_pred EEEEEECEEEEEEECCCCEEEEEEC-CCCCEEEEEEEEEEECCC--------CCCEEEECCCCCCCCCCCCCCEEEEEEC
Q ss_conf 0487406299999666760799982-379167999999972059--------9841699159999875358936999968
Q 002547 498 VADIRNRHQILSFDVRHGLLQKISH-INGSQNVVEEEIDMYSSQ--------GSGAYLFMPNGDAHPITEAGGLMVISKG 568 (909)
Q Consensus 498 ~~~IeN~~~~i~fd~~~G~l~si~~-k~g~~~~v~~~f~~Y~~~--------~sGAYiF~P~~~~~~~~~~~~~i~v~~G 568 (909)
++.|+|+++++.||+.+|+|+++.+ ++|....+.++|.+|.+. .||||||+|++.+.+.....+.+.+++|
T Consensus 2 ~~~i~n~~~~l~fd~~tG~L~si~~~~~g~~~~v~q~f~~Y~s~~g~~~~~~~SGAYiFrP~g~~~~~~~~~~~~~v~~G 81 (282)
T 1o7d_D 2 DLVIQNEYLRARFDPNTGLLMELENLEQNLLLPVRQAFYWYNASTGNNLSSQASGAYIFRPNQNKPLFVSHWAQTHLVKA 81 (282)
T ss_dssp CCEEECSSEEEEECTTTCSEEEEEEC---CEEECEEEEEEEEBCCCBTTBSCCCCSSCCCBSSSSCEESCSCCEEEEEEC
T ss_pred CEEECCCEEEEEECCCCCCEEEEEECCCCEEEEEEEEEEEEECCCCCCCCCCCCCEEEECCCCCCCCCCCCCCEEEEEEC
T ss_conf 57870765999988999868999986788088776789999534688877888726896579987743378847999979
Q ss_pred CCEEEEEEEECCCCCCCCEEEEEEEECCCCCCCEEEEEEEEEEEEECC-CCCCCEEEEEEEEEECCCCEEEECCCCCCCE
Q ss_conf 816899992135656886699999842888641137999999730017-8889449999997407997599707997310
Q 002547 569 PLMEEAYSYPRTAWERSPISHSTRLYNGNNMIQEFLIEKEYHVELLSH-NFNDRELIVRYKTDIDNKRIFYSDLNGFQMS 647 (909)
Q Consensus 569 ~l~~ei~~~~~~~~~~~~i~q~irLy~~~~~~~~~~ie~e~~Vd~~~~-~~~~~ei~~rf~t~i~s~~~fytD~nG~~~i 647 (909)
||++||++.+. .|++|++|||++.. .+|++|+|+++|. +..|||++|||.|+|+|++.||||+|||||+
T Consensus 82 ~lv~eV~~~~~-----~~~sq~~Rly~~~~-----~vE~e~~Vgpipi~d~~~kEiv~r~~T~i~s~~~FYTDsNG~e~~ 151 (282)
T 1o7d_D 82 SLVQEVHQNFS-----AWCSQVVRLYPRQR-----HLELEWTVGPIPVGDGWGKEVISRFDTALATRGLFYTDSNGREIL 151 (282)
T ss_dssp SSCEEEEEEEE-----TTEEEEEEECTTCS-----SEEEEEEECCCCCTTSCCEEEEEEEECCCCCTTEEEEESTTSSEE
T ss_pred CEEEEEEEEEC-----CCEEEEEEEECCCC-----EEEEEEEECCCCCCCCCCCEEEEEEEEEECCCCEEEECCCCCEEE
T ss_conf 89999999978-----96899999936895-----389999985511368888489999985515699688978980305
Q ss_pred ECCC-----CC---CCCCCCCEECCCCEEEEECCCCCEEEEEECCCCCEEECCCCEEEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 0366-----89---998766522137617875188752479622655201047985999993104576898979675567
Q 002547 648 RRET-----YD---KIPLQGNYYPMPALAFMQGSNGQRFSVHSRQSLGVASLKDGWLEIMLDRRLSRDDGRGLGQGVLDN 719 (909)
Q Consensus 648 ~R~~-----~~---~~pv~~nyYP~~s~~~i~D~~~~~ltvltd~~~G~ssl~~G~iEiml~Rrl~~DD~rGvge~l~d~ 719 (909)
||.+ |. ++|++||||||+++|+|+|++ .||+|++||++||||+++|+||||||||+++||+|||||||+|+
T Consensus 152 kR~~~~r~~~~~~~~~pv~gNYYPv~s~~~IqD~~-~rltvl~drs~G~sSl~~G~lElMlhRRl~~DD~rGvge~l~d~ 230 (282)
T 1o7d_D 152 ERRRNYRPTWKLNQTEPVAGNYYPVNSRIYITDGN-MQLTVLTDRSQGGSSLRDGSLELMVHRRLLKDDARGVGEPLNKE 230 (282)
T ss_dssp EEETTCCSSSCCCCSCTTGGGCEEESSEEEEECSS-EEEEEEESSCEEECCSSTTEEEEEEEEECSSCCSSSCCSCSCCC
T ss_pred EEEECCCCCCCCCCCCCCCCCEEEEEEEEEEECCC-EEEEEEECCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCC
T ss_conf 78824565654343567656365001279998288-28999963356330068975999986340446632115443455
Q ss_pred ---CCEEEEEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEECCC
Q ss_conf ---4111799999940567776567888656820333321012247521432158
Q 002547 720 ---RAMNVVFHILVESNISSTSNSISKPLTLSPSLLSHLTGAHLNYPLHAFISKK 771 (909)
Q Consensus 720 ---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~p~~~~~~~~ 771 (909)
..+..+++|+++..... ....|.+++++.+|++++++..
T Consensus 231 ~~gl~v~g~~~l~l~~~~~~-------------~~~~r~~~~~~~~p~~~~fs~~ 272 (282)
T 1o7d_D 231 GSGLWVRGRHLVLLDKKETA-------------AARHRLQAEMEVLAPQVVLAQG 272 (282)
T ss_dssp GGGGSEEEEEEEEEEEHHHH-------------HHHHHHHHHHHHSCCEEEEEEC
T ss_pred CCCEEEEEEEEEEEECCCCC-------------HHHHHHHHHHHHCCHHHHEECC
T ss_conf 88808889999998086432-------------1343478886648506201047
No 5
>1o7d_A Lysosomal alpha-mannosidase; hydrolase, glycosyl hydrolase family 38; HET: NAG BMA MAN NDG; 2.70A {Bos taurus} SCOP: c.6.2.1
Probab=1.00 E-value=1 Score=320.18 Aligned_cols=167 Identities=32% Similarity=0.616 Sum_probs=150.0
Q ss_pred CHHHHHHHHHCCCC--CCCCEECCCCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCEEEEEEECCCCC-CCCCE
Q ss_conf 91155888440999--7720334999998578999998498607896068888999853276489996379999-99862
Q 002547 1 MEGNMWLNDTIGFI--PKNSWAIDPFGYSATMAYLLRRMGFENMLIQRTHYELKKELALHQNLEYIWRQSWDTE-ETSDI 77 (909)
Q Consensus 1 t~Gh~~l~~~fG~~--p~vgW~iDpFGhS~~~p~Ll~~~G~~~~v~~Ri~~~~k~~~~~~k~leF~Wr~~~~~~-~~s~i 77 (909)
++||+|++++||+. |++||+|||||||+++|+||++|||++++++|++|++|+.+...+.+||+|+|+++++ +|++|
T Consensus 124 ~~G~~~~~~~fG~~~~~~~~W~pD~FG~s~~lP~il~~~Gi~~~~~~R~~~~~~~~~~~~~~~eF~W~g~~~~~~dgs~i 203 (298)
T 1o7d_A 124 TLGLRFLEETFGSDGRPRVAWHIDPFGHSREQASLFAQMGFDGFFFGRLDYQDKKVRKKTLQMEQVWRASTSLKPPTADL 203 (298)
T ss_dssp HHHHHHHHHHHGGGGCCSEEEESSSSSCCHHHHHHHHHHTCCEEEESCCCHHHHHHHHHTTCSEEEEECCSSSCTTTTEE
T ss_pred HHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCEEEEECCCCCCCCCCEE
T ss_conf 99999999984998788646847899866789999997599869998334000000145788338987898878999968
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CCCHHHHHHHHHHHHHHHHHHCCCCCCCEE
Q ss_conf 7830798755899877999961001221235875334698888998----799223999999999999861244567849
Q 002547 78 FVHMMPFYSYDIPHTCGPEPAVCCQFDFARMGGFFYEACPWRQNPV----ETNQENVQERALKLLDQYKKKSTLYRTNTL 153 (909)
Q Consensus 78 fth~l~~y~Y~~p~~c~p~~~~c~~fDf~~~~g~~~~~~~~~~~p~----~i~~~nv~~r~~~l~~~~~~~a~~~~tn~i 153 (909)
|||++| ++| +|++++| ||+ .| .++|. .++++||++|++.|+++++++|.+|+||+|
T Consensus 204 ~t~~~~-~~Y------~~~~g~~--fd~---------~~--~~~p~~~~~~~~~~nv~~r~~~~~~~~~~~a~~~~t~~v 263 (298)
T 1o7d_A 204 FTSVLP-NMY------NPPEGLC--WDM---------LC--ADKPVVEDTRSPEYNAKELVRYFLKLATDQGKLYRTKHT 263 (298)
T ss_dssp EEEECS-STT------SCCTTCC--CST---------TC--CCCCCCCCTTSTTCCHHHHHHHHHHHHHHHHTTSSSSEE
T ss_pred EEEEEC-CCC------CCCCCCC--CCC---------CC--CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCE
T ss_conf 999727-887------8988762--345---------66--776746774114779999999999999998750578837
Q ss_pred EEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 9970399899981248999996999999993399973
Q 002547 154 LVPLGDDFRYTTINEAEAQFRNYQLLFDYINSNPSLN 190 (909)
Q Consensus 154 l~p~G~Df~y~~~~~a~~~f~n~~kli~~iN~~~~~~ 190 (909)
|+|+|+||+|. +|..||+||++||+|+|+++++|
T Consensus 264 l~p~G~Df~~~---~a~~~f~n~~~li~~iN~~~~~~ 297 (298)
T 1o7d_A 264 VMTMGSDFQYE---NANTWFKNLDKLIQLVNAQQRAN 297 (298)
T ss_dssp EEEECCBTCCT---THHHHHHHHHHHHHHHHC-----
T ss_pred EECCCCCCCCC---CHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 72267887864---06689988999999996067568
No 6
>1o7d_C Lysosomal alpha-mannosidase; hydrolase, glycosyl hydrolase family 38; HET: NAG BMA MAN NDG; 2.70A {Bos taurus} SCOP: a.8.3.1 b.30.5.6
Probab=1.00 E-value=1 Score=222.88 Aligned_cols=149 Identities=24% Similarity=0.410 Sum_probs=121.7
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999999653212467678861457875999999999999999999999996043345678876441010243678884
Q 002547 296 KLTAARRNLALFQHHDGVTGTAKDHVVLDYGTRMHTSLQDLQIFMSKAIEVLLGIRERYDQNLSQFEPEQVRSKYDAQPV 375 (909)
Q Consensus 296 ~l~~a~~~l~l~QhHDaItGTsk~~V~~Dy~~rL~~~~~~~~~v~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (909)
.|+.|||+|+++|||||||||+|++|++||..||..+++.++.++..+++.|+.... .|..|.. .+.+.||.
T Consensus 2 ~L~~~~k~l~~~QhHDaItGts~~~V~~Dy~~rl~~~~~~~~~l~~~~l~~L~~~~~-------~~~~~~~-ln~~~~~~ 73 (159)
T 1o7d_C 2 DSAPLNEAMAVLQHHDAVSGTSRQHVANDYARQLSEGWRPCEVLMSNALAHLSGLKE-------DFAFCRK-LNISICPL 73 (159)
T ss_dssp CSHHHHHHHHHTTBTTTTTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCS-------CEECCTT-GGGTCCHH
T ss_pred HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-------CCCCCCC-CCCCCCCC
T ss_conf 289999987472557767755757999999999999999999999999999854865-------4442343-33331766
Q ss_pred CEEEEECCCCEEEEEEECCCCCCEEEEEEEEECCCCEEEECCCCEEEEEEECCCCCCCCCCCCCCCEEEEEEEEECCCCE
Q ss_conf 03764058862499999287652359999997589579992798086563013412587533367179999994088814
Q 002547 376 HKVINVHEGTSQSVVIFNPLEQTREEIVMVIVNRPDITVLDSNWTCVQSQISPELRHGKSKIFTGRHRLHWKATIPALGL 455 (909)
Q Consensus 376 ~~~~~~~~~~~~~vvvyNpL~~~r~~~V~i~v~~~~~~V~d~~G~~v~~Qi~~~~~~~~~~~~~~~~~l~f~a~iPplG~ 455 (909)
+ ..++...|+|||||+|+|+++|+++|+.+.+.|+|.+|++|++|+.+++.. ..++|.|.++||||||
T Consensus 74 ~-----~~~~~~~vvvfN~l~~~r~~~V~v~v~~~~~~v~d~~G~~v~~qi~~~~~~-------~~~~l~f~a~vP~lG~ 141 (159)
T 1o7d_C 74 T-----QTAERFQVIVYNPLGRKVDWMVRLPVSKHVYLVKDPGGKIVPSDVVTIPSS-------DSQELLFSALVPAVGF 141 (159)
T ss_dssp H-----HHCSEEEEEEEECSSSCEEEEEEEEECSSCEEEECSSSCEECCEEEEETTT-------TEEEEEEEEEECTTEE
T ss_pred C-----CCCCCEEEEEECCCCCEEEEEEEEEECCCCEEEECCCCCEEEEEEEECCCC-------CCEEEEEEEECCCCEE
T ss_conf 5-----677647999998998617479999986886899959979953699965688-------8449999964088641
Q ss_pred EEEEEEECC
Q ss_conf 999999486
Q 002547 456 QVYYIANGF 464 (909)
Q Consensus 456 ~ty~I~~~~ 464 (909)
++|+|....
T Consensus 142 ~ty~i~~~~ 150 (159)
T 1o7d_C 142 SIYSVSQMP 150 (159)
T ss_dssp EEEEEEECC
T ss_pred EEEEEEECC
T ss_conf 899999789
No 7
>1o7d_B Lysosomal alpha-mannosidase; hydrolase, glycosyl hydrolase family 38; HET: NAG BMA MAN NDG; 2.70A {Bos taurus} SCOP: a.8.3.1 c.6.2.1
Probab=1.00 E-value=1 Score=168.43 Aligned_cols=75 Identities=27% Similarity=0.468 Sum_probs=69.3
Q ss_pred CCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHH
Q ss_conf 73389948978999999997510247899877899767897623873135456897636883262103468899989999
Q 002547 189 LNAEAKFGTLDDYFRTLREEADRINYSRPGEIGSGQVEGFPSLSGDFFTYADRQQDYWSGYYVSRPFFKAVDRVLEQTLR 268 (909)
Q Consensus 189 ~~~~i~~sT~~dYf~al~~~~~~~~~~~~~~~~~~~~~~~p~~~gDffpya~~~~~yWtGyyTSRp~~K~~~R~~e~~L~ 268 (909)
++++|+||||+|||+||++. ...||+++||||||+|++++||||||||||.+|+++|+++++||
T Consensus 1 ~~v~v~ysT~s~Yf~al~~~----------------~~~~p~~~~DFfpYad~~~~yWtGyyTSRp~lK~~~R~~~~~L~ 64 (84)
T 1o7d_B 1 IRVNVLYSTPACYLWELNKA----------------NLSWSVKKDDFFPYADGPYMFWTGYFSSRPALKRYERLSYNFLQ 64 (84)
T ss_dssp CCEEEEECCHHHHHHHHHHT----------------CCCBCEECSCCCSCCSBTTBCSCGGGTSCHHHHHHHHHHHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHH----------------CCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHH
T ss_conf 93789967999999999974----------------78886558770035679997504542077999999999799999
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999850
Q 002547 269 ATEMMVALLLG 279 (909)
Q Consensus 269 ~aE~L~sla~~ 279 (909)
+||+|++++..
T Consensus 65 ~ae~L~~la~~ 75 (84)
T 1o7d_B 65 VCNQLEALAGP 75 (84)
T ss_dssp HHHHHHHHSCC
T ss_pred HHHHHHHHHHH
T ss_conf 99999998744
No 8
>1o7d_E Lysosomal alpha-mannosidase; hydrolase, glycosyl hydrolase family 38; HET: NAG BMA MAN NDG; 2.70A {Bos taurus} SCOP: b.30.5.6
Probab=1.00 E-value=1 Score=150.90 Aligned_cols=111 Identities=21% Similarity=0.261 Sum_probs=83.0
Q ss_pred CCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCC---CCCCCCCCCCCHHHHCCCCC
Q ss_conf 987688878999852798522379998878999866247888863056532237987---41102563434754224585
Q 002547 781 PRSFSPLAGSLPCDLHIVNFKVPRPSKYSQQSPDDSRFVLILQRRYWDSSYCRKGRS---QCVSVVDEPLNLFSMFKGLA 857 (909)
Q Consensus 781 ~~~~s~l~~~lP~~vhLltl~~~~~~~~~~~~~~~~r~~~ll~~~~~d~~~~~~~~~---~~~~~~~~~v~l~~lf~~~~ 857 (909)
..+|+++..+||+|||||||++|.+.. ++||.+|+ | +.+++ .|+. +++|+|++||..|+
T Consensus 2 ~~~~s~l~~~LP~nvhLlTLe~~~~~~------------iLlRl~hl---~-e~~ed~~~~~s~--pv~v~l~~lF~~~~ 63 (126)
T 1o7d_E 2 RTQFSGLRRELPPSVRLLTLARWGPET------------LLLRLEHQ---F-AVGEDSGRNLSS--PVTLDLTNLFSAFT 63 (126)
T ss_dssp CCEECSBSSCCCTTCEEEEEEEEETTE------------EEEEEECC---C-CTTTTTTTTCSS--CEEEECSSSBSSSE
T ss_pred CCCCCCCCCCCCCCEEEEEEEECCCCC------------EEEEEEEE---C-CCCCCCCCCCCC--CEEEEHHHHHCCCC
T ss_conf 655476333499828678989868996------------99997720---4-256675433575--16885899515064
Q ss_pred CCEEEECCCCCCCCCCCCCCCCCCCCCC---------CCCCCEEECCCEEEEEEEEEEECC
Q ss_conf 0258872354732334646888765688---------899835853642248999985489
Q 002547 858 ILNAKATSLNLLNDDIGMLGYPEQLEDV---------SQDGQVTIAPMEIQAYKLEMRPNE 909 (909)
Q Consensus 858 v~~~~e~sL~~~~~~~~~~~~~~~~~~~---------~~~~~v~l~Pmeirtf~~~~~~~~ 909 (909)
|.+++||+|++++...++.+|+|..... .....|+|.|||||||+|++++++
T Consensus 64 i~~i~EttLtgn~~~~~~~Rl~w~~~~~~~~~~~~~~~~~~~vtL~PmEIRTFii~~~~~~ 124 (126)
T 1o7d_E 64 ITNLRETTLAANQLLAYASRLQWTTDTGPTPHPSPSRPVSATITLQPMEIRTFLASVQWEE 124 (126)
T ss_dssp EEEEEEECTTSSSBGGGCCCCCCCBC--------------CEEEECTTCEEEEEEEEEC--
T ss_pred CCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCEEEEEEEEEECC
T ss_conf 1369997363664521001010234787754556657777659976860799999987446
No 9
>1k1x_A 4-alpha-glucanotransferase; 2.40A {Thermococcus litoralis} SCOP: a.8.3.2 b.30.5.8 c.6.2.2 PDB: 1k1w_A 1k1y_A*
Probab=1.00 E-value=1 Score=47.17 Aligned_cols=44 Identities=16% Similarity=0.348 Sum_probs=41.2
Q ss_pred HHHHHHHHHCCCCCCCCEECCCCCCCHHHHHHHHHCCCCEEEEEEC
Q ss_conf 1155888440999772033499999857899999849860789606
Q 002547 2 EGNMWLNDTIGFIPKNSWAIDPFGYSATMAYLLRRMGFENMLIQRT 47 (909)
Q Consensus 2 ~Gh~~l~~~fG~~p~vgW~iDpFGhS~~~p~Ll~~~G~~~~v~~Ri 47 (909)
+|.++++ .||+.|+..|.||. ++++.+|++++++||+++++.--
T Consensus 104 ~g~~~~~-~FG~~P~G~WlPE~-~ys~~l~~iL~~~Gi~y~~td~~ 147 (659)
T 1k1x_A 104 MLKDYAR-KLGYDAKGVWLTER-VWQPELVKSLREAGIEYVVVDDY 147 (659)
T ss_dssp HHHHHHH-HTTCCCCEEECGGG-CBCTTHHHHHHHTTCCEEEEEHH
T ss_pred HHHHHHH-HCCCCCCEEECCCC-CCCHHHHHHHHHCCCCEEEECCH
T ss_conf 9999999-74997888987623-56766999999869939998733
No 10
>3p0b_A TT1467 protein; glycoside hydrolase GH57, glycogen branching, transferase; 1.35A {Thermus thermophilus} PDB: 1ufa_A
Probab=1.00 E-value=1 Score=39.26 Aligned_cols=264 Identities=16% Similarity=0.162 Sum_probs=129.4
Q ss_pred HHHHHHHHHCCCCCCCCEECCCCCCCH-----------------HHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCEEE-
Q ss_conf 115588844099977203349999985-----------------78999998498607896068888999853276489-
Q 002547 2 EGNMWLNDTIGFIPKNSWAIDPFGYSA-----------------TMAYLLRRMGFENMLIQRTHYELKKELALHQNLEY- 63 (909)
Q Consensus 2 ~Gh~~l~~~fG~~p~vgW~iDpFGhS~-----------------~~p~Ll~~~G~~~~v~~Ri~~~~k~~~~~~k~leF- 63 (909)
.|.+.+++.||..|+..|.+.- ++++ .+..+++++||+++++---... ...+.-.+
T Consensus 184 ~g~~~~~~~FG~~P~G~WlpE~-ay~~~~~~~~~~~~~~~~~~~~l~~~L~~~Gi~y~~vd~~~~~-----~~~~~p~yG 257 (540)
T 3p0b_A 184 TGVSTYRRHFAKDPTGFWLPEM-AYRPKGPWKPPVEGPPEGVRPGVDELLMRAGIRYTFVDAHLVQ-----GGEPLSPYG 257 (540)
T ss_dssp HHHHHHHHHHSSCCCBEECGGG-CBCCSEEECCSSSCSCCEEECCHHHHHHHTTCCEEEECTHHHH-----CSSCCCC--
T ss_pred HHHHHHHHHHCCCCCEEECCCC-CEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCHHHC-----CCCCCCCCC
T ss_conf 9999999980999998989422-1307655555543333331312999999859949998845541-----688888877
Q ss_pred --EEEECCC---------CCCCCCEEEEECCCCCCCC--C--CCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCC---
Q ss_conf --9963799---------9999862783079875589--9--8779999610012212---3587533469888899---
Q 002547 64 --IWRQSWD---------TEETSDIFVHMMPFYSYDI--P--HTCGPEPAVCCQFDFA---RMGGFFYEACPWRQNP--- 122 (909)
Q Consensus 64 --~Wr~~~~---------~~~~s~ifth~l~~y~Y~~--p--~~c~p~~~~c~~fDf~---~~~g~~~~~~~~~~~p--- 122 (909)
+..+..+ .+++-.||.--.. -|.+| + +|.| +|.. -||. ...|+.|-.-.|..-|
T Consensus 258 ~~~~~p~~~~~~py~v~~~~~~i~vf~RD~~-lS~~VWS~~~GYPG-d~~Y---ReF~rd~~~tGfky~rit~~~~~l~~ 332 (540)
T 3p0b_A 258 EAALGPVESQEATYHVHELESGLRVLARNPE-TTLQVWSADYGYPG-EGLY---REFHRKDPLSGLHHWRVTHRKADLAE 332 (540)
T ss_dssp ------CCCCGGGGSEEECTTSCEEEEBCHH-HHHHHHCTTTSGGG-STTS---BCSSCCCTTTCCCCBBCCSTTCCGGG
T ss_pred CCCCCCCCCCCCCEEECCCCCCEEEEECCHH-HHHHCCCCCCCCCC-CHHH---HHHCCCCCCCCCEEECCCCCCCCCCC
T ss_conf 6566643344453010258986699967877-77643455468999-8057---65401244566024136776577545
Q ss_pred -CCCCHHH----HHHHHHHHHHHHHHHCCCCCCCEEEEEECC-CCC-CCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf -8799223----999999999999861244567849997039-989-998124899999699999999339997338994
Q 002547 123 -VETNQEN----VQERALKLLDQYKKKSTLYRTNTLLVPLGD-DFR-YTTINEAEAQFRNYQLLFDYINSNPSLNAEAKF 195 (909)
Q Consensus 123 -~~i~~~n----v~~r~~~l~~~~~~~a~~~~tn~il~p~G~-Df~-y~~~~~a~~~f~n~~kli~~iN~~~~~~~~i~~ 195 (909)
.+-+++. +++-|..|+...+++........|.+++-. =|. +- .|+. .-++.+++.+.+.+ .+++
T Consensus 333 K~pYdp~~A~~~~~~hA~~Fv~~l~~~~~~~~~~lvv~~~D~ElfGHww--~eG~---~fL~~l~r~l~~~~----~i~~ 403 (540)
T 3p0b_A 333 KAPYDPEAAFAKTEEHARHFVGLLERLAGRHPEGVILSPYDAELFGHWW--YEGV---AWLEAVLRLLAQNP----KVRP 403 (540)
T ss_dssp CCBCCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEEEGGGBTTTB--TTHH---HHHHHHHHHHTTCS----SEEE
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHCCCCC--CHHH---HHHHHHHHHHHHCC----CEEE
T ss_conf 6778999999999999999999999999745899899985524414684--5779---99999999873169----8499
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 89789999999975102478998778997678976238731354568976368832621034688999899999999999
Q 002547 196 GTLDDYFRTLREEADRINYSRPGEIGSGQVEGFPSLSGDFFTYADRQQDYWSGYYVSRPFFKAVDRVLEQTLRATEMMVA 275 (909)
Q Consensus 196 sT~~dYf~al~~~~~~~~~~~~~~~~~~~~~~~p~~~gDffpya~~~~~yWtGyyTSRp~~K~~~R~~e~~L~~aE~L~s 275 (909)
.|+++|.+.... .. . + ...+|-. .+.+..|.|=-.. +.-..+.++.+.|..
T Consensus 404 ~T~se~L~~~~~----~~-~-~------~~sSWg~---------~g~~~~Wlg~~~~--------w~~~~l~~a~~~m~~ 454 (540)
T 3p0b_A 404 VTAREAVQGPAV----RT-A-L------PEGSWGR---------GGDHRVWLNEKTL--------DYWEKVYRAEGAMRE 454 (540)
T ss_dssp CCHHHHTCSCEE----EC-C-C------CSBCSSG---------GGSSTTTSSGGGH--------HHHHHHHHHHHHHHH
T ss_pred ECHHHHHHHCCC----CC-C-C------CCCCCCC---------CCCCCCCCCCHHH--------HHHHHHHHHHHHHHH
T ss_conf 779999975898----78-8-7------9977889---------9983736897799--------999999999999999
Q ss_pred HHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC--C--CCCCHHHHHHHHHHHH
Q ss_conf 9850012333366861468999999999653212467--6--7886145787599999
Q 002547 276 LLLGYCQRAQCEKLPMSFAYKLTAARRNLALFQHHDG--V--TGTAKDHVVLDYGTRM 329 (909)
Q Consensus 276 la~~~~~~~~~~~~~~~~~~~l~~a~~~l~l~QhHDa--I--tGTsk~~V~~Dy~~rL 329 (909)
++. . +. .. ...|+.|+|.|+++|-=|= + +||+. ||+.+.
T Consensus 455 ~~~-~-----~~-~~---~r~l~Qa~RELLlAesSDW~f~~~~~t~~-----~YA~~r 497 (540)
T 3p0b_A 455 AAR-R-----GV-LP---EGVLRQAMRELLLLEASDWPFLMETGQAE-----AYARER 497 (540)
T ss_dssp HHH-H-----CC-SC---HHHHHHHHHHHHHHTBTHHHHTTTCTTTH-----HHHHHH
T ss_pred HHH-C-----CC-CC---HHHHHHHHHHHHHHHHCCCHHHCCCCCCH-----HHHHHH
T ss_conf 862-2-----65-53---99999999999999848138772699846-----889999
Done!