Query 002549
Match_columns 909
No_of_seqs 583 out of 4270
Neff 11.4
Searched_HMMs 46136
Date Fri Mar 29 02:14:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002549.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002549hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 5.6E-85 1.2E-89 764.6 74.4 678 111-885 48-727 (857)
2 PLN03077 Protein ECB2; Provisi 100.0 1.3E-77 2.8E-82 702.5 73.5 675 44-745 50-727 (857)
3 PLN03218 maturation of RBCL 1; 100.0 5.4E-66 1.2E-70 587.7 70.6 545 78-675 368-916 (1060)
4 PLN03218 maturation of RBCL 1; 100.0 5.4E-66 1.2E-70 587.7 70.0 559 98-710 355-916 (1060)
5 PLN03081 pentatricopeptide (PP 100.0 3.4E-60 7.4E-65 541.7 53.8 476 218-883 84-562 (697)
6 PLN03081 pentatricopeptide (PP 100.0 2.1E-59 4.5E-64 535.3 53.6 473 112-705 85-559 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 2.1E-49 4.5E-54 480.7 107.2 828 52-909 30-896 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 5.3E-47 1.2E-51 459.6 106.7 792 56-876 102-898 (899)
9 PRK11447 cellulose synthase su 100.0 2E-29 4.4E-34 302.7 81.8 684 83-882 31-745 (1157)
10 PRK11447 cellulose synthase su 100.0 4.4E-30 9.6E-35 308.4 74.1 650 189-908 31-735 (1157)
11 PRK09782 bacteriophage N4 rece 100.0 2.7E-27 5.8E-32 269.5 70.1 659 197-907 55-734 (987)
12 PRK09782 bacteriophage N4 rece 100.0 1.7E-25 3.7E-30 254.8 73.6 682 91-899 55-759 (987)
13 KOG2002 TPR-containing nuclear 100.0 1.5E-22 3.4E-27 213.8 65.3 562 202-807 146-744 (1018)
14 KOG4626 O-linked N-acetylgluco 100.0 5.9E-26 1.3E-30 226.5 34.8 448 399-866 51-507 (966)
15 KOG2002 TPR-containing nuclear 100.0 2.2E-22 4.9E-27 212.6 63.3 558 307-877 146-744 (1018)
16 KOG4626 O-linked N-acetylgluco 100.0 2.3E-25 5E-30 222.3 38.2 444 329-824 51-500 (966)
17 TIGR00990 3a0801s09 mitochondr 99.9 2E-20 4.3E-25 211.4 45.6 396 468-878 133-571 (615)
18 TIGR00990 3a0801s09 mitochondr 99.9 5.9E-19 1.3E-23 199.5 53.0 434 362-848 128-574 (615)
19 KOG2076 RNA polymerase III tra 99.9 8.4E-17 1.8E-21 169.9 61.5 668 190-909 143-891 (895)
20 PRK11788 tetratricopeptide rep 99.9 1.8E-20 3.8E-25 201.6 34.3 304 541-885 44-354 (389)
21 PRK11788 tetratricopeptide rep 99.9 3.8E-20 8.3E-25 199.0 34.4 285 614-908 46-342 (389)
22 PRK15174 Vi polysaccharide exp 99.9 3.1E-19 6.8E-24 200.3 42.3 363 471-848 14-384 (656)
23 KOG0495 HAT repeat protein [RN 99.9 2.6E-15 5.7E-20 152.2 65.3 611 200-883 265-883 (913)
24 PRK15174 Vi polysaccharide exp 99.9 1.3E-18 2.8E-23 195.3 44.9 377 441-842 15-402 (656)
25 PRK10049 pgaA outer membrane p 99.9 1E-18 2.2E-23 200.9 42.7 424 452-893 3-469 (765)
26 PRK10049 pgaA outer membrane p 99.9 2.7E-18 5.8E-23 197.4 43.9 419 428-859 12-470 (765)
27 KOG0495 HAT repeat protein [RN 99.9 1.9E-14 4.2E-19 146.0 64.4 538 94-727 265-805 (913)
28 PRK14574 hmsH outer membrane p 99.9 2.2E-17 4.8E-22 184.9 47.3 394 502-907 73-507 (822)
29 KOG2076 RNA polymerase III tra 99.8 2.4E-14 5.2E-19 151.7 63.0 684 128-875 153-892 (895)
30 KOG2003 TPR repeat-containing 99.8 2.8E-16 6.2E-21 151.9 40.9 500 290-873 200-717 (840)
31 PRK14574 hmsH outer membrane p 99.8 1.2E-14 2.7E-19 163.1 54.1 446 196-705 44-515 (822)
32 KOG4422 Uncharacterized conser 99.8 3E-14 6.5E-19 137.3 45.2 448 112-597 114-590 (625)
33 KOG4318 Bicoid mRNA stability 99.8 1.3E-13 2.9E-18 145.0 50.7 752 73-905 18-864 (1088)
34 KOG0985 Vesicle coat protein c 99.8 1.9E-11 4.2E-16 130.2 65.0 192 646-875 1055-1246(1666)
35 KOG4318 Bicoid mRNA stability 99.8 5.6E-14 1.2E-18 147.8 45.8 246 644-900 464-755 (1088)
36 KOG4422 Uncharacterized conser 99.8 1E-13 2.2E-18 133.7 43.0 305 49-391 120-463 (625)
37 KOG2003 TPR repeat-containing 99.8 3E-14 6.5E-19 138.1 37.6 474 223-723 203-708 (840)
38 TIGR00540 hemY_coli hemY prote 99.7 6.4E-15 1.4E-19 156.9 31.4 285 616-908 97-394 (409)
39 KOG0547 Translocase of outer m 99.7 7.7E-14 1.7E-18 137.1 34.5 228 642-877 329-565 (606)
40 KOG1915 Cell cycle control pro 99.7 5.9E-11 1.3E-15 116.6 53.4 445 234-717 86-548 (677)
41 KOG1915 Cell cycle control pro 99.7 2.1E-11 4.5E-16 119.7 48.7 451 291-787 73-548 (677)
42 KOG1155 Anaphase-promoting com 99.7 2.4E-12 5.3E-17 126.0 41.7 194 538-772 336-535 (559)
43 KOG1155 Anaphase-promoting com 99.7 3.8E-12 8.3E-17 124.7 42.1 365 427-805 160-533 (559)
44 KOG2047 mRNA splicing factor [ 99.7 1.5E-09 3.2E-14 111.1 61.9 578 187-864 103-709 (835)
45 KOG1126 DNA-binding cell divis 99.7 4.4E-15 9.6E-20 152.3 22.3 270 620-907 336-614 (638)
46 KOG0985 Vesicle coat protein c 99.7 9E-10 1.9E-14 117.9 61.1 612 189-876 609-1306(1666)
47 KOG1173 Anaphase-promoting com 99.7 2.8E-12 6E-17 129.1 40.0 215 634-854 307-527 (611)
48 KOG1173 Anaphase-promoting com 99.7 2.4E-12 5.2E-17 129.5 39.0 284 599-893 240-531 (611)
49 KOG4162 Predicted calmodulin-b 99.7 7.5E-10 1.6E-14 116.2 58.2 476 409-908 240-778 (799)
50 PF13429 TPR_15: Tetratricopep 99.7 6.2E-16 1.3E-20 156.6 13.7 257 610-875 15-274 (280)
51 KOG0547 Translocase of outer m 99.7 3.4E-12 7.3E-17 125.8 38.6 431 328-842 117-565 (606)
52 KOG3785 Uncharacterized conser 99.7 1.3E-11 2.7E-16 116.5 39.7 220 549-782 271-497 (557)
53 PF13429 TPR_15: Tetratricopep 99.7 6.3E-16 1.4E-20 156.5 12.5 256 644-908 13-272 (280)
54 KOG1126 DNA-binding cell divis 99.6 9.5E-14 2.1E-18 142.7 26.1 278 547-877 334-619 (638)
55 PRK10747 putative protoheme IX 99.6 6.1E-13 1.3E-17 140.9 32.0 283 581-877 97-389 (398)
56 PRK10747 putative protoheme IX 99.6 1.3E-12 2.8E-17 138.4 33.1 278 616-908 97-385 (398)
57 TIGR00540 hemY_coli hemY prote 99.6 2.1E-12 4.5E-17 137.8 33.0 295 473-806 95-397 (409)
58 KOG2047 mRNA splicing factor [ 99.6 5.5E-09 1.2E-13 107.1 54.9 567 80-725 102-710 (835)
59 KOG3785 Uncharacterized conser 99.6 4.1E-10 8.9E-15 106.5 41.6 457 333-852 29-497 (557)
60 KOG3616 Selective LIM binding 99.6 3.2E-08 6.9E-13 102.7 56.5 715 58-886 545-1359(1636)
61 KOG4162 Predicted calmodulin-b 99.6 1.2E-09 2.7E-14 114.6 47.0 508 232-772 238-782 (799)
62 KOG3617 WD40 and TPR repeat-co 99.6 4.8E-09 1E-13 110.1 50.4 589 185-878 725-1359(1416)
63 KOG3616 Selective LIM binding 99.5 3E-08 6.6E-13 102.9 55.5 404 191-668 620-1024(1636)
64 COG2956 Predicted N-acetylgluc 99.5 2.3E-11 5.1E-16 113.7 30.1 223 545-772 48-277 (389)
65 KOG1127 TPR repeat-containing 99.5 4.1E-09 8.8E-14 113.4 50.6 355 496-890 816-1186(1238)
66 COG2956 Predicted N-acetylgluc 99.5 3.3E-11 7.1E-16 112.7 29.7 292 579-877 46-346 (389)
67 KOG1174 Anaphase-promoting com 99.5 2.2E-10 4.9E-15 110.6 33.9 269 603-883 232-503 (564)
68 KOG1174 Anaphase-promoting com 99.5 9.2E-10 2E-14 106.5 37.1 272 531-849 231-504 (564)
69 PRK12370 invasion protein regu 99.5 1E-11 2.2E-16 137.8 26.9 247 619-877 277-534 (553)
70 COG3071 HemY Uncharacterized e 99.5 2.2E-10 4.8E-15 111.1 32.1 291 581-883 97-395 (400)
71 COG3071 HemY Uncharacterized e 99.5 1.4E-10 3E-15 112.4 30.2 281 616-908 97-385 (400)
72 KOG1156 N-terminal acetyltrans 99.5 4.7E-09 1E-13 108.0 41.9 458 399-907 11-505 (700)
73 KOG1127 TPR repeat-containing 99.5 1.3E-08 2.9E-13 109.6 45.6 599 236-892 473-1117(1238)
74 KOG1156 N-terminal acetyltrans 99.4 1.7E-09 3.7E-14 111.2 36.7 419 475-908 20-463 (700)
75 KOG1129 TPR repeat-containing 99.4 9.3E-12 2E-16 116.1 18.4 235 640-883 224-461 (478)
76 PRK12370 invasion protein regu 99.4 3.2E-11 7E-16 133.8 26.3 242 653-906 275-529 (553)
77 KOG1129 TPR repeat-containing 99.4 2.4E-11 5.3E-16 113.4 18.3 229 572-807 227-457 (478)
78 KOG1840 Kinesin light chain [C 99.4 9.7E-11 2.1E-15 122.6 23.4 240 636-908 196-474 (508)
79 TIGR02521 type_IV_pilW type IV 99.4 1.7E-10 3.8E-15 114.5 24.5 198 639-877 31-231 (234)
80 COG3063 PilF Tfp pilus assembl 99.4 1.7E-10 3.6E-15 103.2 21.0 190 676-906 37-229 (250)
81 KOG2376 Signal recognition par 99.4 1.4E-08 3.1E-13 103.4 37.3 121 332-460 18-139 (652)
82 TIGR02521 type_IV_pilW type IV 99.3 4.2E-10 9.2E-15 111.7 24.7 197 571-772 34-231 (234)
83 KOG1840 Kinesin light chain [C 99.3 3E-09 6.5E-14 111.6 30.1 210 572-841 245-477 (508)
84 KOG3617 WD40 and TPR repeat-co 99.3 2.4E-07 5.2E-12 97.8 42.8 249 79-388 725-994 (1416)
85 KOG1125 TPR repeat-containing 99.3 3.4E-10 7.4E-15 115.0 20.7 259 612-906 294-564 (579)
86 PRK11189 lipoprotein NlpI; Pro 99.3 1E-09 2.2E-14 111.1 23.8 216 618-842 41-264 (296)
87 KOG0624 dsRNA-activated protei 99.3 4.2E-08 9.1E-13 92.9 32.0 211 469-706 45-255 (504)
88 KOG2376 Signal recognition par 99.3 2.5E-07 5.5E-12 94.6 39.8 462 364-875 15-517 (652)
89 PRK11189 lipoprotein NlpI; Pro 99.3 2.4E-09 5.2E-14 108.4 26.0 228 653-890 40-276 (296)
90 KOG0624 dsRNA-activated protei 99.3 2E-08 4.3E-13 95.0 29.6 192 540-739 46-253 (504)
91 PF12569 NARP1: NMDA receptor- 99.3 8.3E-09 1.8E-13 110.0 30.3 286 611-908 12-329 (517)
92 KOG0548 Molecular co-chaperone 99.2 2.1E-08 4.5E-13 101.4 30.5 384 469-878 9-455 (539)
93 KOG0548 Molecular co-chaperone 99.2 5E-08 1.1E-12 98.7 33.0 237 606-861 227-472 (539)
94 COG3063 PilF Tfp pilus assembl 99.2 5.5E-09 1.2E-13 93.7 23.4 197 641-842 37-235 (250)
95 PF13041 PPR_2: PPR repeat fam 99.2 1.8E-11 3.9E-16 85.3 6.3 50 112-161 1-50 (50)
96 cd05804 StaR_like StaR_like; a 99.2 2.7E-08 5.8E-13 105.6 33.4 258 614-877 54-335 (355)
97 PF12569 NARP1: NMDA receptor- 99.2 1.7E-08 3.6E-13 107.7 31.2 53 855-908 462-515 (517)
98 PF13041 PPR_2: PPR repeat fam 99.2 3.2E-11 6.9E-16 84.0 6.5 49 219-267 1-49 (50)
99 KOG4340 Uncharacterized conser 99.2 3.3E-08 7E-13 91.7 25.2 195 189-393 13-210 (459)
100 KOG1125 TPR repeat-containing 99.1 8.8E-09 1.9E-13 105.0 21.1 256 575-868 292-561 (579)
101 cd05804 StaR_like StaR_like; a 99.1 4.9E-07 1.1E-11 95.9 34.2 59 784-842 269-335 (355)
102 PLN02789 farnesyltranstransfer 99.1 6.4E-08 1.4E-12 97.4 24.7 240 582-876 34-300 (320)
103 PRK04841 transcriptional regul 99.0 6.2E-07 1.4E-11 108.2 35.4 375 500-879 344-761 (903)
104 KOG4340 Uncharacterized conser 99.0 4.7E-07 1E-11 84.2 24.9 429 360-878 9-443 (459)
105 PF04733 Coatomer_E: Coatomer 98.9 3.9E-08 8.4E-13 97.7 16.1 254 611-884 9-269 (290)
106 PF04733 Coatomer_E: Coatomer 98.9 9.6E-08 2.1E-12 94.9 18.4 223 500-738 38-265 (290)
107 PLN02789 farnesyltranstransfer 98.9 9E-07 1.9E-11 89.2 25.5 205 544-756 49-267 (320)
108 KOG2053 Mitochondrial inherita 98.9 0.00026 5.7E-09 77.0 50.0 234 44-286 9-256 (932)
109 PRK14720 transcript cleavage f 98.9 6.3E-07 1.4E-11 100.3 26.2 259 564-883 27-289 (906)
110 PRK04841 transcriptional regul 98.9 8.1E-06 1.8E-10 98.6 37.5 371 470-843 349-760 (903)
111 KOG1914 mRNA cleavage and poly 98.9 0.00019 4.1E-09 73.4 42.5 208 690-900 309-526 (656)
112 KOG2053 Mitochondrial inherita 98.9 0.00036 7.7E-09 76.0 49.5 111 198-314 21-133 (932)
113 KOG1128 Uncharacterized conser 98.8 1E-06 2.2E-11 92.7 22.2 219 531-772 397-615 (777)
114 PRK15179 Vi polysaccharide bio 98.8 3.2E-07 7E-12 102.0 19.3 132 741-878 83-217 (694)
115 COG5010 TadD Flp pilus assembl 98.8 1.1E-06 2.3E-11 81.4 18.6 154 750-908 72-226 (257)
116 TIGR03302 OM_YfiO outer membra 98.8 1.4E-06 3E-11 85.9 21.2 193 635-877 29-231 (235)
117 KOG1914 mRNA cleavage and poly 98.7 0.00047 1E-08 70.6 42.4 210 584-796 309-527 (656)
118 KOG1128 Uncharacterized conser 98.7 1.8E-06 3.9E-11 90.9 21.2 218 638-877 397-615 (777)
119 TIGR03302 OM_YfiO outer membra 98.7 3.6E-06 7.8E-11 83.0 21.7 66 640-706 71-147 (235)
120 PRK14720 transcript cleavage f 98.7 2.9E-06 6.2E-11 95.2 22.3 234 632-905 24-282 (906)
121 PRK10370 formate-dependent nit 98.7 1.5E-06 3.2E-11 81.5 17.2 129 757-892 52-185 (198)
122 COG5010 TadD Flp pilus assembl 98.6 4.9E-06 1.1E-10 77.1 19.3 157 607-768 70-226 (257)
123 PF12854 PPR_1: PPR repeat 98.6 5E-08 1.1E-12 60.4 4.1 32 181-212 2-33 (34)
124 PRK15179 Vi polysaccharide bio 98.6 5.6E-06 1.2E-10 92.4 22.7 134 565-703 83-217 (694)
125 PF12854 PPR_1: PPR repeat 98.6 5.6E-08 1.2E-12 60.2 4.0 33 216-248 2-34 (34)
126 COG4783 Putative Zn-dependent 98.6 9.7E-06 2.1E-10 81.9 21.7 159 637-817 304-462 (484)
127 PRK10370 formate-dependent nit 98.6 1E-06 2.2E-11 82.7 14.2 120 616-739 52-174 (198)
128 PRK15359 type III secretion sy 98.6 1.2E-06 2.7E-11 77.5 13.7 103 608-714 29-131 (144)
129 PRK15359 type III secretion sy 98.6 1.5E-06 3.3E-11 76.9 14.2 108 625-739 15-122 (144)
130 KOG0550 Molecular chaperone (D 98.6 1.8E-05 3.9E-10 77.8 21.5 187 646-860 176-368 (486)
131 COG4783 Putative Zn-dependent 98.5 3.4E-05 7.4E-10 78.1 23.1 139 613-773 316-454 (484)
132 KOG1070 rRNA processing protei 98.5 5.5E-05 1.2E-09 85.7 26.7 224 634-865 1453-1687(1710)
133 KOG1070 rRNA processing protei 98.5 4.8E-05 1.1E-09 86.1 26.1 233 605-842 1460-1699(1710)
134 KOG3060 Uncharacterized conser 98.5 0.00022 4.8E-09 65.7 25.4 149 493-647 47-196 (289)
135 KOG0550 Molecular chaperone (D 98.5 1.3E-05 2.7E-10 78.8 18.5 293 574-896 55-369 (486)
136 KOG3081 Vesicle coat complex C 98.5 3.9E-05 8.6E-10 71.0 20.3 247 611-876 16-269 (299)
137 KOG3060 Uncharacterized conser 98.4 7.4E-05 1.6E-09 68.7 20.8 173 534-713 54-229 (289)
138 TIGR02552 LcrH_SycD type III s 98.4 6.3E-06 1.4E-10 73.0 13.6 104 634-739 12-115 (135)
139 KOG3081 Vesicle coat complex C 98.4 0.00037 8.1E-09 64.8 24.5 248 195-459 17-270 (299)
140 PRK15363 pathogenicity island 98.3 1.5E-05 3.2E-10 68.9 12.8 100 783-886 39-141 (157)
141 KOG1130 Predicted G-alpha GTPa 98.2 1.1E-05 2.5E-10 78.7 11.8 114 610-723 24-149 (639)
142 PRK15363 pathogenicity island 98.2 3.2E-05 7E-10 66.8 13.0 102 634-737 29-131 (157)
143 TIGR02552 LcrH_SycD type III s 98.2 3.5E-05 7.5E-10 68.2 14.0 110 661-773 5-114 (135)
144 COG4700 Uncharacterized protei 98.2 0.00017 3.7E-09 62.7 16.7 132 742-877 87-221 (251)
145 PF09976 TPR_21: Tetratricopep 98.2 4E-05 8.6E-10 68.4 13.3 112 791-908 23-142 (145)
146 PF07079 DUF1347: Protein of u 98.2 0.011 2.4E-07 59.7 46.1 206 674-889 298-530 (549)
147 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 6.4E-05 1.4E-09 77.4 14.9 124 746-876 171-295 (395)
148 KOG0553 TPR repeat-containing 98.1 2.9E-05 6.3E-10 73.6 10.9 97 751-853 88-186 (304)
149 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 0.00011 2.5E-09 75.6 16.0 121 780-908 170-292 (395)
150 PF09976 TPR_21: Tetratricopep 98.1 9.9E-05 2.1E-09 65.8 13.9 116 756-875 23-144 (145)
151 COG3898 Uncharacterized membra 98.1 0.015 3.3E-07 57.4 31.9 272 493-812 114-396 (531)
152 KOG0553 TPR repeat-containing 98.1 7E-05 1.5E-09 71.1 12.7 94 610-706 88-181 (304)
153 COG3898 Uncharacterized membra 98.1 0.016 3.4E-07 57.3 32.6 289 545-884 97-398 (531)
154 KOG2041 WD40 repeat protein [G 98.1 0.017 3.6E-07 61.4 30.6 60 824-883 1031-1091(1189)
155 PF14938 SNAP: Soluble NSF att 98.1 0.0031 6.8E-08 63.6 25.7 61 644-704 119-185 (282)
156 COG4700 Uncharacterized protei 98.0 0.00048 1E-08 60.1 16.4 148 689-840 71-219 (251)
157 TIGR00756 PPR pentatricopeptid 98.0 7.4E-06 1.6E-10 52.0 4.2 34 116-149 2-35 (35)
158 KOG1130 Predicted G-alpha GTPa 98.0 6.5E-05 1.4E-09 73.7 11.5 132 746-877 197-343 (639)
159 PF12895 Apc3: Anaphase-promot 97.9 7.7E-06 1.7E-10 64.8 3.6 77 793-874 3-83 (84)
160 PF12895 Apc3: Anaphase-promot 97.9 1.5E-05 3.2E-10 63.1 5.2 77 827-908 2-82 (84)
161 PF13812 PPR_3: Pentatricopept 97.9 1.3E-05 2.8E-10 50.4 4.0 33 115-147 2-34 (34)
162 CHL00033 ycf3 photosystem I as 97.9 0.00014 3E-09 67.0 12.2 97 778-876 34-140 (168)
163 PF14938 SNAP: Soluble NSF att 97.9 0.0013 2.8E-08 66.3 20.2 196 645-875 41-263 (282)
164 TIGR02795 tol_pal_ybgF tol-pal 97.9 0.00014 3E-09 62.6 11.3 94 781-878 4-105 (119)
165 TIGR00756 PPR pentatricopeptid 97.9 1.8E-05 3.9E-10 50.2 4.1 33 223-255 2-34 (35)
166 PRK10866 outer membrane biogen 97.9 0.0047 1E-07 60.2 22.4 202 638-876 31-239 (243)
167 cd00189 TPR Tetratricopeptide 97.9 0.00018 3.8E-09 59.1 10.9 94 642-737 3-96 (100)
168 TIGR02795 tol_pal_ybgF tol-pal 97.8 0.0004 8.7E-09 59.7 13.1 98 641-739 4-106 (119)
169 PLN03088 SGT1, suppressor of 97.8 0.00019 4.1E-09 74.7 12.8 94 751-849 9-103 (356)
170 PF07079 DUF1347: Protein of u 97.8 0.049 1.1E-06 55.2 42.7 50 649-700 472-521 (549)
171 PF13812 PPR_3: Pentatricopept 97.8 3.3E-05 7.1E-10 48.5 4.0 32 223-254 3-34 (34)
172 PRK02603 photosystem I assembl 97.8 0.00069 1.5E-08 62.5 14.1 96 779-876 35-147 (172)
173 PLN03088 SGT1, suppressor of 97.8 0.00046 9.9E-09 71.8 14.3 92 612-706 11-102 (356)
174 cd00189 TPR Tetratricopeptide 97.8 0.00035 7.5E-09 57.3 11.0 92 610-704 7-98 (100)
175 PF13414 TPR_11: TPR repeat; P 97.7 0.00012 2.6E-09 55.3 6.6 63 813-877 2-66 (69)
176 PRK10866 outer membrane biogen 97.7 0.0085 1.8E-07 58.4 20.9 201 673-907 31-235 (243)
177 PRK10153 DNA-binding transcrip 97.7 0.0013 2.8E-08 71.5 16.8 151 670-852 333-489 (517)
178 PRK15331 chaperone protein Sic 97.7 0.00089 1.9E-08 58.3 12.1 104 632-737 30-133 (165)
179 PF01535 PPR: PPR repeat; Int 97.7 4.3E-05 9.4E-10 46.7 2.9 31 115-145 1-31 (31)
180 PRK02603 photosystem I assembl 97.6 0.0018 4E-08 59.7 14.7 131 567-724 34-166 (172)
181 COG4235 Cytochrome c biogenesi 97.6 0.0016 3.4E-08 62.7 14.2 105 634-740 151-258 (287)
182 PF10037 MRP-S27: Mitochondria 97.6 0.00089 1.9E-08 69.4 13.1 119 255-373 65-185 (429)
183 PF13432 TPR_16: Tetratricopep 97.6 0.0003 6.6E-09 52.3 7.3 62 644-706 2-63 (65)
184 CHL00033 ycf3 photosystem I as 97.6 0.0014 3.1E-08 60.3 13.2 94 745-840 36-139 (168)
185 PF12688 TPR_5: Tetratrico pep 97.6 0.0019 4.1E-08 54.2 12.5 52 615-666 13-65 (120)
186 PF12688 TPR_5: Tetratrico pep 97.6 0.0022 4.8E-08 53.8 12.9 97 640-736 2-102 (120)
187 PF13414 TPR_11: TPR repeat; P 97.6 0.00028 6.2E-09 53.3 7.1 65 639-704 3-68 (69)
188 COG4235 Cytochrome c biogenesi 97.6 0.0025 5.3E-08 61.4 14.7 112 777-894 154-270 (287)
189 PF13432 TPR_16: Tetratricopep 97.6 0.00018 3.9E-09 53.6 5.6 56 820-877 3-59 (65)
190 PF10037 MRP-S27: Mitochondria 97.6 0.0012 2.7E-08 68.4 13.4 124 286-409 61-186 (429)
191 PRK15331 chaperone protein Sic 97.6 0.0044 9.5E-08 54.1 14.5 89 786-877 44-133 (165)
192 PF01535 PPR: PPR repeat; Int 97.5 9.1E-05 2E-09 45.2 3.0 28 223-250 2-29 (31)
193 PF13525 YfiO: Outer membrane 97.5 0.023 5E-07 53.9 20.5 186 639-868 5-197 (203)
194 PRK10153 DNA-binding transcrip 97.5 0.0042 9E-08 67.7 17.4 118 619-740 358-484 (517)
195 PF06239 ECSIT: Evolutionarily 97.5 0.0023 4.9E-08 58.3 12.2 114 101-236 35-153 (228)
196 PF08579 RPM2: Mitochondrial r 97.5 0.0027 5.8E-08 50.8 11.0 83 116-198 27-116 (120)
197 KOG1538 Uncharacterized conser 97.4 0.019 4.2E-07 60.3 19.5 99 639-772 747-845 (1081)
198 PF14559 TPR_19: Tetratricopep 97.4 0.00028 6E-09 53.2 4.9 58 826-887 3-61 (68)
199 KOG2796 Uncharacterized conser 97.4 0.076 1.7E-06 49.7 20.8 131 641-772 179-314 (366)
200 PRK10803 tol-pal system protei 97.3 0.002 4.4E-08 63.1 11.0 94 781-878 145-246 (263)
201 KOG1538 Uncharacterized conser 97.3 0.054 1.2E-06 57.2 21.3 56 602-667 746-801 (1081)
202 PF08579 RPM2: Mitochondrial r 97.3 0.0039 8.4E-08 49.9 10.2 71 301-371 35-114 (120)
203 PF05843 Suf: Suppressor of fo 97.2 0.0059 1.3E-07 61.2 13.6 94 606-702 4-98 (280)
204 KOG2796 Uncharacterized conser 97.2 0.085 1.8E-06 49.4 19.3 135 571-706 180-318 (366)
205 PRK10803 tol-pal system protei 97.2 0.0058 1.3E-07 59.9 12.5 90 614-706 154-249 (263)
206 PF13525 YfiO: Outer membrane 97.2 0.013 2.9E-07 55.6 14.5 189 674-905 5-199 (203)
207 PF13371 TPR_9: Tetratricopept 97.2 0.0018 3.8E-08 49.6 7.1 55 822-878 3-58 (73)
208 COG0457 NrfG FOG: TPR repeat [ 97.1 0.25 5.3E-06 48.9 25.2 222 617-877 37-264 (291)
209 PF14559 TPR_19: Tetratricopep 97.1 0.0013 2.9E-08 49.4 6.2 64 91-156 2-65 (68)
210 PF05843 Suf: Suppressor of fo 97.1 0.012 2.5E-07 59.1 14.4 128 223-354 3-135 (280)
211 PLN03098 LPA1 LOW PSII ACCUMUL 97.1 0.003 6.4E-08 64.9 10.0 97 778-880 74-176 (453)
212 COG0457 NrfG FOG: TPR repeat [ 97.1 0.35 7.6E-06 47.7 30.6 228 581-848 36-268 (291)
213 KOG2041 WD40 repeat protein [G 97.1 0.61 1.3E-05 50.2 31.8 86 358-454 689-783 (1189)
214 KOG1585 Protein required for f 97.0 0.19 4.1E-06 46.7 19.4 207 639-872 31-250 (308)
215 PF06239 ECSIT: Evolutionarily 97.0 0.013 2.9E-07 53.5 12.0 104 254-376 45-153 (228)
216 KOG1941 Acetylcholine receptor 97.0 0.012 2.7E-07 57.3 12.3 231 646-876 13-273 (518)
217 PF13424 TPR_12: Tetratricopep 97.0 0.00096 2.1E-08 51.9 4.2 63 815-877 6-74 (78)
218 COG4785 NlpI Lipoprotein NlpI, 97.0 0.29 6.3E-06 44.6 20.2 97 642-740 68-164 (297)
219 PF13281 DUF4071: Domain of un 96.9 0.16 3.5E-06 51.9 20.4 82 795-878 242-334 (374)
220 PF13371 TPR_9: Tetratricopept 96.9 0.0035 7.5E-08 47.9 6.8 59 647-706 3-61 (73)
221 KOG2114 Vacuolar assembly/sort 96.9 0.98 2.1E-05 50.1 28.0 177 259-457 337-516 (933)
222 PF03704 BTAD: Bacterial trans 96.9 0.056 1.2E-06 48.3 15.6 115 754-887 16-139 (146)
223 PRK11906 transcriptional regul 96.8 0.049 1.1E-06 56.3 16.0 113 654-769 319-432 (458)
224 KOG0543 FKBP-type peptidyl-pro 96.8 0.022 4.7E-07 57.3 12.9 95 779-877 257-354 (397)
225 PRK11906 transcriptional regul 96.8 0.05 1.1E-06 56.3 15.8 160 710-875 252-433 (458)
226 PF13424 TPR_12: Tetratricopep 96.8 0.00095 2.1E-08 51.9 2.9 60 850-909 6-71 (78)
227 PLN03098 LPA1 LOW PSII ACCUMUL 96.7 0.011 2.4E-07 60.8 10.5 64 742-807 73-140 (453)
228 COG5107 RNA14 Pre-mRNA 3'-end 96.7 0.86 1.9E-05 46.5 36.5 94 311-409 29-122 (660)
229 PF13281 DUF4071: Domain of un 96.7 0.14 3E-06 52.3 17.9 157 750-908 147-329 (374)
230 KOG2610 Uncharacterized conser 96.7 0.021 4.5E-07 55.2 10.9 161 720-883 114-281 (491)
231 COG4105 ComL DNA uptake lipopr 96.6 0.66 1.4E-05 44.2 20.3 81 639-720 34-117 (254)
232 KOG1941 Acetylcholine receptor 96.6 0.46 1E-05 46.9 19.3 56 750-805 212-272 (518)
233 KOG0543 FKBP-type peptidyl-pro 96.6 0.094 2E-06 52.9 15.2 94 606-702 260-354 (397)
234 PF04184 ST7: ST7 protein; In 96.5 0.24 5.2E-06 51.5 17.9 101 748-851 263-381 (539)
235 KOG4555 TPR repeat-containing 96.5 0.033 7.1E-07 45.8 9.3 89 788-880 52-146 (175)
236 KOG1585 Protein required for f 96.4 0.45 9.8E-06 44.3 17.4 203 604-834 32-247 (308)
237 PF03704 BTAD: Bacterial trans 96.4 0.056 1.2E-06 48.3 12.0 71 675-746 63-138 (146)
238 PF04840 Vps16_C: Vps16, C-ter 96.4 1.3 2.9E-05 45.0 26.9 109 711-839 179-287 (319)
239 KOG4555 TPR repeat-containing 96.3 0.058 1.3E-06 44.4 10.0 93 612-706 52-147 (175)
240 KOG1258 mRNA processing protei 96.3 2 4.3E-05 46.1 34.5 177 537-720 302-486 (577)
241 PF10300 DUF3808: Protein of u 96.3 0.073 1.6E-06 57.7 13.9 113 792-908 246-371 (468)
242 COG1729 Uncharacterized protei 96.2 0.033 7.2E-07 53.1 9.2 98 781-885 144-249 (262)
243 PF13431 TPR_17: Tetratricopep 96.2 0.0042 9E-08 38.4 2.2 32 837-870 2-34 (34)
244 KOG2114 Vacuolar assembly/sort 96.1 2.8 6E-05 46.8 23.8 176 294-488 337-516 (933)
245 KOG1550 Extracellular protein 96.0 3.2 7E-05 46.4 25.7 223 641-878 290-538 (552)
246 KOG2610 Uncharacterized conser 96.0 0.31 6.7E-06 47.6 14.5 184 685-873 114-310 (491)
247 PF13512 TPR_18: Tetratricopep 95.9 0.14 3.1E-06 43.8 10.9 86 789-877 20-127 (142)
248 PF13512 TPR_18: Tetratricopep 95.9 0.27 5.9E-06 42.2 12.4 84 639-723 10-96 (142)
249 KOG1258 mRNA processing protei 95.8 3.3 7.2E-05 44.5 34.7 186 638-828 296-489 (577)
250 COG1729 Uncharacterized protei 95.8 0.13 2.8E-06 49.3 11.3 67 639-706 178-247 (262)
251 COG3118 Thioredoxin domain-con 95.7 1 2.2E-05 43.8 16.9 51 543-595 145-195 (304)
252 COG3118 Thioredoxin domain-con 95.7 1.1 2.4E-05 43.5 17.2 155 682-875 142-299 (304)
253 COG4785 NlpI Lipoprotein NlpI, 95.7 1 2.3E-05 41.2 15.9 91 613-706 75-165 (297)
254 PF10300 DUF3808: Protein of u 95.6 2.7 5.8E-05 45.8 22.4 82 619-702 249-333 (468)
255 COG4649 Uncharacterized protei 95.6 0.33 7.2E-06 42.5 12.0 128 754-882 68-200 (221)
256 PF04840 Vps16_C: Vps16, C-ter 95.6 3 6.6E-05 42.5 31.1 108 294-421 180-287 (319)
257 COG5107 RNA14 Pre-mRNA 3'-end 95.6 3.2 7E-05 42.6 36.7 138 76-215 38-190 (660)
258 KOG1920 IkappaB kinase complex 95.6 2.1 4.6E-05 49.7 21.5 106 717-840 947-1052(1265)
259 PF13428 TPR_14: Tetratricopep 95.4 0.035 7.5E-07 37.0 4.4 31 676-706 3-33 (44)
260 PF08631 SPO22: Meiosis protei 95.4 3.5 7.6E-05 41.4 23.8 161 745-908 85-270 (278)
261 PF04184 ST7: ST7 protein; In 95.3 1.4 3.1E-05 46.1 17.3 75 607-681 263-338 (539)
262 KOG3941 Intermediate in Toll s 95.2 0.15 3.3E-06 48.3 9.5 116 100-237 54-174 (406)
263 COG4105 ComL DNA uptake lipopr 95.2 3 6.6E-05 39.8 20.9 53 680-733 173-228 (254)
264 PRK09687 putative lyase; Provi 95.1 4 8.6E-05 40.9 26.1 202 673-895 67-278 (280)
265 PF13428 TPR_14: Tetratricopep 95.1 0.071 1.5E-06 35.5 5.2 41 640-681 2-42 (44)
266 KOG1550 Extracellular protein 95.0 4.5 9.7E-05 45.3 22.0 213 651-879 261-505 (552)
267 PF09205 DUF1955: Domain of un 94.9 1.9 4.1E-05 36.1 13.7 62 783-845 90-151 (161)
268 PF12921 ATP13: Mitochondrial 94.8 0.46 1E-05 40.5 10.6 47 323-369 49-96 (126)
269 KOG4234 TPR repeat-containing 94.7 0.37 8.1E-06 43.3 9.9 85 789-876 105-195 (271)
270 PF08631 SPO22: Meiosis protei 94.7 5.4 0.00012 40.1 25.3 19 823-841 255-273 (278)
271 COG4649 Uncharacterized protei 94.5 2.1 4.6E-05 37.7 13.8 123 580-702 70-195 (221)
272 smart00299 CLH Clathrin heavy 94.4 3.1 6.8E-05 36.6 15.8 85 190-282 11-95 (140)
273 PF04053 Coatomer_WDAD: Coatom 94.4 1.9 4.1E-05 46.2 16.5 132 579-739 272-403 (443)
274 PF13431 TPR_17: Tetratricopep 94.3 0.048 1E-06 33.7 2.6 26 634-659 8-33 (34)
275 PF12921 ATP13: Mitochondrial 94.2 0.82 1.8E-05 38.9 10.7 48 218-265 49-97 (126)
276 PF00515 TPR_1: Tetratricopept 94.1 0.089 1.9E-06 32.5 3.7 31 816-848 3-33 (34)
277 COG2976 Uncharacterized protei 94.1 1.4 3.1E-05 39.8 12.2 90 786-879 96-189 (207)
278 KOG1586 Protein required for f 93.7 6.1 0.00013 37.0 23.0 89 758-848 128-227 (288)
279 PF13176 TPR_7: Tetratricopept 93.5 0.14 3E-06 32.2 3.8 26 851-876 1-26 (36)
280 KOG4234 TPR repeat-containing 93.5 0.7 1.5E-05 41.6 9.2 93 646-739 102-198 (271)
281 PF04053 Coatomer_WDAD: Coatom 93.5 5.4 0.00012 42.8 17.7 154 407-593 272-427 (443)
282 PF09613 HrpB1_HrpK: Bacterial 93.4 2 4.3E-05 37.9 11.8 51 616-668 23-73 (160)
283 KOG4648 Uncharacterized conser 93.3 0.4 8.6E-06 46.9 8.0 93 750-849 103-198 (536)
284 COG2976 Uncharacterized protei 93.1 5.9 0.00013 36.1 14.4 91 751-843 96-188 (207)
285 smart00299 CLH Clathrin heavy 93.0 5.9 0.00013 34.8 15.6 84 261-352 12-95 (140)
286 PF07719 TPR_2: Tetratricopept 93.0 0.15 3.3E-06 31.4 3.5 26 817-842 4-29 (34)
287 PF13176 TPR_7: Tetratricopept 93.0 0.17 3.6E-06 31.8 3.6 27 816-842 1-27 (36)
288 PF10602 RPN7: 26S proteasome 92.7 1.3 2.8E-05 40.6 10.4 97 779-875 36-139 (177)
289 PF09205 DUF1955: Domain of un 92.6 5.7 0.00012 33.4 13.4 61 295-356 90-150 (161)
290 KOG2280 Vacuolar assembly/sort 92.5 21 0.00046 39.8 35.1 87 297-385 443-531 (829)
291 KOG1920 IkappaB kinase complex 91.9 32 0.00069 40.7 28.1 134 295-456 912-1051(1265)
292 PF06552 TOM20_plant: Plant sp 91.8 3.8 8.3E-05 36.8 11.5 32 620-653 52-83 (186)
293 COG2909 MalT ATP-dependent tra 91.7 29 0.00062 39.8 27.0 24 854-877 623-646 (894)
294 KOG4642 Chaperone-dependent E3 91.7 2.3 4.9E-05 39.8 10.3 79 793-875 24-104 (284)
295 KOG1586 Protein required for f 91.6 12 0.00026 35.2 20.7 20 720-739 165-184 (288)
296 KOG2280 Vacuolar assembly/sort 91.5 27 0.00059 39.0 33.8 107 677-802 687-793 (829)
297 PF00515 TPR_1: Tetratricopept 91.5 0.53 1.1E-05 29.0 4.5 30 676-705 3-32 (34)
298 PF06552 TOM20_plant: Plant sp 91.4 0.74 1.6E-05 41.1 6.8 110 760-880 7-138 (186)
299 KOG3941 Intermediate in Toll s 91.4 1.9 4.1E-05 41.3 9.7 71 758-828 86-172 (406)
300 PF09613 HrpB1_HrpK: Bacterial 91.3 9.8 0.00021 33.7 13.4 60 644-704 15-74 (160)
301 COG3629 DnrI DNA-binding trans 91.1 1.9 4.2E-05 42.3 10.0 77 779-856 153-234 (280)
302 PF10602 RPN7: 26S proteasome 91.0 2.5 5.5E-05 38.8 10.2 29 569-597 37-65 (177)
303 PF13181 TPR_8: Tetratricopept 90.9 0.27 5.8E-06 30.3 2.8 26 817-842 4-29 (34)
304 COG3629 DnrI DNA-binding trans 90.7 2.6 5.7E-05 41.4 10.5 77 82-158 155-236 (280)
305 PF07719 TPR_2: Tetratricopept 90.4 0.76 1.6E-05 28.2 4.5 30 676-705 3-32 (34)
306 PF07035 Mic1: Colon cancer-as 90.3 13 0.00029 33.4 15.6 98 384-487 17-114 (167)
307 PF02259 FAT: FAT domain; Int 89.8 29 0.00062 36.5 24.8 146 708-861 145-304 (352)
308 KOG0890 Protein kinase of the 89.2 81 0.0018 40.8 33.0 150 226-385 1388-1542(2382)
309 PRK09687 putative lyase; Provi 88.9 27 0.00059 35.0 32.4 235 77-335 34-276 (280)
310 PF04910 Tcf25: Transcriptiona 88.5 35 0.00075 35.7 17.9 65 673-737 99-167 (360)
311 PF13170 DUF4003: Protein of u 88.5 30 0.00065 35.0 20.7 127 274-402 80-223 (297)
312 PF07035 Mic1: Colon cancer-as 88.3 19 0.00041 32.4 15.8 24 677-700 92-115 (167)
313 PF02259 FAT: FAT domain; Int 88.2 37 0.0008 35.7 26.1 64 568-631 146-212 (352)
314 PF13174 TPR_6: Tetratricopept 88.0 0.75 1.6E-05 27.9 3.2 26 852-877 3-28 (33)
315 PF13170 DUF4003: Protein of u 88.0 32 0.0007 34.7 22.5 115 760-876 119-244 (297)
316 PF00637 Clathrin: Region in C 87.7 0.025 5.5E-07 50.3 -5.2 129 750-900 13-141 (143)
317 KOG2396 HAT (Half-A-TPR) repea 87.4 43 0.00094 35.6 42.5 97 531-631 459-558 (568)
318 PF13374 TPR_10: Tetratricopep 87.3 1.1 2.3E-05 29.1 3.8 28 850-877 3-30 (42)
319 PF10345 Cohesin_load: Cohesin 87.2 62 0.0013 37.1 41.9 49 508-556 372-428 (608)
320 KOG0276 Vesicle coat complex C 87.0 4.4 9.5E-05 43.4 9.6 99 755-874 648-746 (794)
321 TIGR02561 HrpB1_HrpK type III 86.9 20 0.00043 31.2 13.2 51 616-668 23-73 (153)
322 KOG4642 Chaperone-dependent E3 86.4 9 0.00019 36.1 10.2 86 613-701 20-105 (284)
323 KOG4648 Uncharacterized conser 86.3 2.4 5.3E-05 41.7 6.9 89 612-703 106-194 (536)
324 KOG1308 Hsp70-interacting prot 85.9 0.55 1.2E-05 46.3 2.5 89 791-883 126-216 (377)
325 PF10345 Cohesin_load: Cohesin 85.7 73 0.0016 36.5 47.5 166 293-459 61-253 (608)
326 KOG4570 Uncharacterized conser 85.6 6.4 0.00014 38.5 9.2 102 181-286 59-165 (418)
327 COG2909 MalT ATP-dependent tra 85.3 78 0.0017 36.5 30.2 187 649-839 468-684 (894)
328 PF09986 DUF2225: Uncharacteri 85.2 14 0.00029 35.3 11.4 64 816-879 120-195 (214)
329 KOG2471 TPR repeat-containing 85.0 56 0.0012 34.6 15.9 109 788-897 249-382 (696)
330 KOG3807 Predicted membrane pro 85.0 43 0.00093 33.3 18.2 196 618-852 199-398 (556)
331 COG4455 ImpE Protein of avirul 84.9 5.3 0.00011 36.9 7.8 73 782-858 4-81 (273)
332 PRK15180 Vi polysaccharide bio 84.5 57 0.0012 34.3 30.1 119 303-425 301-420 (831)
333 COG5159 RPN6 26S proteasome re 84.5 42 0.0009 32.7 16.0 91 750-842 131-234 (421)
334 PF08424 NRDE-2: NRDE-2, neces 84.4 41 0.00088 34.7 15.4 26 749-774 159-184 (321)
335 PF13181 TPR_8: Tetratricopept 84.1 2.3 4.9E-05 26.0 4.0 28 850-877 2-29 (34)
336 KOG0276 Vesicle coat complex C 84.1 11 0.00023 40.7 10.7 99 686-805 649-747 (794)
337 KOG4570 Uncharacterized conser 84.0 17 0.00038 35.7 11.3 100 286-389 59-163 (418)
338 PF07721 TPR_4: Tetratricopept 84.0 1.4 3.1E-05 25.1 2.7 22 852-873 4-25 (26)
339 PF13174 TPR_6: Tetratricopept 83.9 2.1 4.5E-05 25.8 3.7 27 679-705 5-31 (33)
340 KOG2396 HAT (Half-A-TPR) repea 83.8 65 0.0014 34.4 41.4 100 634-736 455-557 (568)
341 KOG4507 Uncharacterized conser 83.8 8.4 0.00018 41.2 9.8 110 675-786 608-717 (886)
342 PF11207 DUF2989: Protein of u 83.7 34 0.00073 31.8 12.5 72 203-275 123-197 (203)
343 KOG0376 Serine-threonine phosp 83.6 2.1 4.6E-05 44.6 5.5 99 790-894 15-115 (476)
344 KOG2297 Predicted translation 83.6 48 0.001 32.7 17.8 69 268-346 267-341 (412)
345 PF13374 TPR_10: Tetratricopep 83.6 1.8 4E-05 28.0 3.6 28 815-842 3-30 (42)
346 COG1747 Uncharacterized N-term 83.5 67 0.0015 34.3 24.8 166 636-808 63-234 (711)
347 PF07163 Pex26: Pex26 protein; 82.8 12 0.00025 36.4 9.5 87 716-802 90-181 (309)
348 TIGR03504 FimV_Cterm FimV C-te 82.6 2.3 5E-05 28.0 3.5 27 853-879 3-29 (44)
349 PF00637 Clathrin: Region in C 82.6 0.35 7.5E-06 42.9 -0.4 82 645-733 13-94 (143)
350 PF11207 DUF2989: Protein of u 82.4 10 0.00023 34.9 8.8 73 726-799 123-198 (203)
351 KOG3364 Membrane protein invol 81.8 7.5 0.00016 32.9 6.9 71 776-849 29-104 (149)
352 COG0790 FOG: TPR repeat, SEL1 81.5 65 0.0014 32.7 21.0 50 654-706 92-145 (292)
353 TIGR02561 HrpB1_HrpK type III 81.1 37 0.0008 29.7 12.1 55 649-704 20-74 (153)
354 KOG4507 Uncharacterized conser 80.8 8.2 0.00018 41.3 8.5 103 474-579 619-721 (886)
355 PF04097 Nic96: Nup93/Nic96; 80.7 1.1E+02 0.0024 35.0 23.4 41 402-443 117-157 (613)
356 PRK10941 hypothetical protein; 80.5 14 0.00029 36.6 9.7 78 817-896 184-263 (269)
357 COG1747 Uncharacterized N-term 80.1 89 0.0019 33.4 23.0 91 535-631 69-159 (711)
358 KOG2471 TPR repeat-containing 80.0 87 0.0019 33.3 25.9 120 540-687 248-382 (696)
359 PF10579 Rapsyn_N: Rapsyn N-te 79.1 4.5 9.7E-05 30.5 4.4 47 826-872 18-66 (80)
360 PF14853 Fis1_TPR_C: Fis1 C-te 79.0 4.3 9.3E-05 28.2 4.1 29 820-850 7-35 (53)
361 PF09986 DUF2225: Uncharacteri 79.0 13 0.00027 35.5 8.7 84 825-908 88-189 (214)
362 PF04097 Nic96: Nup93/Nic96; 79.0 1.3E+02 0.0027 34.5 25.7 88 228-320 265-356 (613)
363 KOG2066 Vacuolar assembly/sort 78.8 1.2E+02 0.0027 34.4 28.2 102 193-303 363-467 (846)
364 COG0790 FOG: TPR repeat, SEL1 77.5 86 0.0019 31.8 23.7 123 759-888 128-276 (292)
365 PF08424 NRDE-2: NRDE-2, neces 77.5 92 0.002 32.1 16.8 119 619-740 47-185 (321)
366 COG3947 Response regulator con 77.3 78 0.0017 31.2 15.7 60 676-736 281-340 (361)
367 PF07575 Nucleopor_Nup85: Nup8 76.3 92 0.002 35.3 16.1 76 346-423 390-465 (566)
368 PF07721 TPR_4: Tetratricopept 76.0 4.3 9.4E-05 23.0 2.9 24 886-909 3-26 (26)
369 PF00244 14-3-3: 14-3-3 protei 75.6 67 0.0015 31.2 12.8 58 679-736 6-64 (236)
370 PF14853 Fis1_TPR_C: Fis1 C-te 75.0 7.9 0.00017 26.9 4.5 39 851-891 3-41 (53)
371 COG4455 ImpE Protein of avirul 74.9 20 0.00043 33.4 8.1 120 746-878 3-134 (273)
372 KOG3364 Membrane protein invol 74.4 54 0.0012 28.1 9.8 73 811-886 29-106 (149)
373 smart00028 TPR Tetratricopepti 74.3 4.5 9.8E-05 23.6 3.1 23 820-842 7-29 (34)
374 PF14561 TPR_20: Tetratricopep 73.9 42 0.0009 26.6 9.0 54 670-723 18-72 (90)
375 KOG2297 Predicted translation 73.9 98 0.0021 30.7 20.2 212 112-381 109-341 (412)
376 KOG0551 Hsp90 co-chaperone CNS 73.8 18 0.00038 36.1 8.0 94 781-876 83-180 (390)
377 KOG1464 COP9 signalosome, subu 73.4 92 0.002 30.1 18.1 174 180-353 20-218 (440)
378 PF02284 COX5A: Cytochrome c o 73.1 42 0.00092 27.0 8.4 45 170-214 29-73 (108)
379 TIGR03504 FimV_Cterm FimV C-te 72.0 5.2 0.00011 26.4 2.9 26 679-704 4-29 (44)
380 cd00923 Cyt_c_Oxidase_Va Cytoc 71.9 26 0.00057 27.8 7.0 59 657-716 25-83 (103)
381 PF04910 Tcf25: Transcriptiona 71.8 1.4E+02 0.0029 31.4 17.4 54 647-700 111-165 (360)
382 PF00244 14-3-3: 14-3-3 protei 71.6 77 0.0017 30.8 12.1 61 643-703 5-66 (236)
383 smart00028 TPR Tetratricopepti 71.5 8.1 0.00018 22.4 3.8 26 677-702 4-29 (34)
384 PF04190 DUF410: Protein of un 70.3 1.2E+02 0.0026 30.1 19.3 86 578-663 20-114 (260)
385 KOG2063 Vacuolar assembly/sort 70.1 2.3E+02 0.005 33.4 19.6 90 718-807 600-712 (877)
386 TIGR02508 type_III_yscG type I 70.1 55 0.0012 26.2 8.4 51 300-356 48-98 (115)
387 PF10579 Rapsyn_N: Rapsyn N-te 70.0 9.3 0.0002 28.9 4.1 49 859-907 16-66 (80)
388 PF02284 COX5A: Cytochrome c o 69.7 33 0.00071 27.6 7.2 58 658-716 29-86 (108)
389 cd00923 Cyt_c_Oxidase_Va Cytoc 69.5 56 0.0012 26.1 8.7 59 170-229 26-84 (103)
390 PF14689 SPOB_a: Sensor_kinase 69.5 9.7 0.00021 27.6 4.1 46 830-877 6-51 (62)
391 KOG0687 26S proteasome regulat 69.0 1.3E+02 0.0029 30.2 15.7 96 781-876 106-208 (393)
392 KOG0376 Serine-threonine phosp 68.9 17 0.00038 38.2 7.3 88 577-668 13-101 (476)
393 PF12968 DUF3856: Domain of Un 68.3 69 0.0015 26.7 13.8 31 854-884 105-140 (144)
394 PF12862 Apc5: Anaphase-promot 68.0 26 0.00055 28.1 6.8 52 826-877 10-69 (94)
395 COG3947 Response regulator con 67.8 1.3E+02 0.0029 29.7 18.9 66 820-887 285-356 (361)
396 KOG2066 Vacuolar assembly/sort 67.6 2.3E+02 0.005 32.4 27.2 103 87-198 363-467 (846)
397 PF14561 TPR_20: Tetratricopep 67.5 54 0.0012 26.0 8.3 58 634-691 17-75 (90)
398 PF12968 DUF3856: Domain of Un 66.7 75 0.0016 26.5 9.1 92 817-908 10-124 (144)
399 KOG1464 COP9 signalosome, subu 66.3 1.3E+02 0.0028 29.1 23.5 163 642-805 68-257 (440)
400 KOG1308 Hsp70-interacting prot 65.1 9 0.0002 38.2 4.2 86 653-740 128-213 (377)
401 KOG2063 Vacuolar assembly/sort 63.5 3.1E+02 0.0068 32.5 16.9 27 116-142 506-532 (877)
402 PRK10941 hypothetical protein; 63.1 71 0.0015 31.7 10.1 59 608-668 186-244 (269)
403 KOG2062 26S proteasome regulat 62.6 2.8E+02 0.006 31.6 39.5 125 503-631 507-634 (929)
404 PRK13800 putative oxidoreducta 61.4 3.7E+02 0.0081 32.7 27.1 125 742-876 754-879 (897)
405 PF11846 DUF3366: Domain of un 61.3 19 0.00042 33.7 5.8 45 830-876 127-171 (193)
406 PRK11619 lytic murein transgly 61.3 3.1E+02 0.0066 31.7 40.9 463 292-815 35-512 (644)
407 PF04190 DUF410: Protein of un 61.3 1.8E+02 0.0038 28.9 17.3 68 488-555 40-113 (260)
408 KOG2062 26S proteasome regulat 61.1 2.9E+02 0.0064 31.4 37.2 139 717-862 509-655 (929)
409 PF07163 Pex26: Pex26 protein; 60.7 97 0.0021 30.4 9.9 87 646-732 90-181 (309)
410 PF08311 Mad3_BUB1_I: Mad3/BUB 60.1 1.1E+02 0.0024 26.2 11.5 62 75-139 61-124 (126)
411 KOG0545 Aryl-hydrocarbon recep 59.9 1.7E+02 0.0036 28.2 12.8 65 640-705 231-295 (329)
412 PF06957 COPI_C: Coatomer (COP 59.8 53 0.0011 34.8 8.9 49 799-849 283-333 (422)
413 KOG0545 Aryl-hydrocarbon recep 59.4 97 0.0021 29.7 9.4 99 639-738 178-293 (329)
414 PF13929 mRNA_stabil: mRNA sta 59.3 1.9E+02 0.0042 28.7 17.6 82 251-332 197-284 (292)
415 PHA02875 ankyrin repeat protei 57.9 2E+02 0.0044 30.9 13.9 76 125-210 10-89 (413)
416 TIGR02508 type_III_yscG type I 56.8 1E+02 0.0022 24.8 9.6 53 193-251 46-98 (115)
417 PRK11619 lytic murein transgly 56.1 3.7E+02 0.008 31.0 41.1 52 335-387 321-372 (644)
418 KOG2422 Uncharacterized conser 56.1 3.1E+02 0.0068 30.2 21.4 91 682-772 350-447 (665)
419 KOG2581 26S proteasome regulat 55.9 2.6E+02 0.0057 29.2 13.4 30 674-703 124-155 (493)
420 PHA02875 ankyrin repeat protei 55.8 2.2E+02 0.0048 30.7 13.7 130 172-313 16-154 (413)
421 PRK12798 chemotaxis protein; R 54.4 2.9E+02 0.0062 29.2 21.7 193 687-883 125-329 (421)
422 KOG0530 Protein farnesyltransf 54.4 2.2E+02 0.0047 27.8 20.4 121 619-743 59-181 (318)
423 PF09670 Cas_Cas02710: CRISPR- 53.8 1.4E+02 0.003 31.6 11.1 57 681-738 138-198 (379)
424 PF02184 HAT: HAT (Half-A-TPR) 52.7 32 0.0007 20.8 3.5 26 829-856 2-27 (32)
425 smart00386 HAT HAT (Half-A-TPR 52.6 28 0.00061 20.5 3.7 28 95-122 2-29 (33)
426 COG4259 Uncharacterized protei 51.6 1.1E+02 0.0024 24.5 7.0 55 834-890 57-111 (121)
427 KOG0551 Hsp90 co-chaperone CNS 51.3 96 0.0021 31.3 8.4 94 642-736 84-180 (390)
428 COG4941 Predicted RNA polymera 50.1 1.8E+02 0.004 29.4 10.1 123 757-885 269-399 (415)
429 KOG4814 Uncharacterized conser 50.0 1.6E+02 0.0034 32.7 10.4 84 791-877 366-456 (872)
430 PHA02537 M terminase endonucle 49.5 2.2E+02 0.0048 27.4 10.4 24 826-851 190-213 (230)
431 smart00101 14_3_3 14-3-3 homol 47.8 2.8E+02 0.006 27.1 16.3 58 680-737 7-67 (244)
432 PRK13342 recombination factor 47.7 3.9E+02 0.0085 28.8 17.6 22 758-779 244-265 (413)
433 COG5187 RPN7 26S proteasome re 47.7 2.9E+02 0.0063 27.3 13.9 71 778-848 114-189 (412)
434 PF07575 Nucleopor_Nup85: Nup8 47.6 4.7E+02 0.01 29.7 21.0 110 781-893 427-539 (566)
435 KOG0686 COP9 signalosome, subu 47.6 3.6E+02 0.0078 28.3 13.8 64 674-738 150-216 (466)
436 PF09477 Type_III_YscG: Bacter 47.4 1.6E+02 0.0034 24.2 9.0 84 161-251 16-99 (116)
437 PF11817 Foie-gras_1: Foie gra 45.3 59 0.0013 32.0 6.4 57 819-875 183-244 (247)
438 PF12862 Apc5: Anaphase-promot 44.7 1.1E+02 0.0023 24.5 6.8 16 756-771 10-25 (94)
439 PF10255 Paf67: RNA polymerase 44.5 1.2E+02 0.0025 32.2 8.5 59 608-666 127-191 (404)
440 PF09670 Cas_Cas02710: CRISPR- 44.4 3E+02 0.0066 29.2 11.9 59 121-180 138-198 (379)
441 PF01347 Vitellogenin_N: Lipop 43.7 5.6E+02 0.012 29.5 20.8 64 220-284 503-568 (618)
442 PF11846 DUF3366: Domain of un 43.5 60 0.0013 30.4 6.0 45 799-847 131-175 (193)
443 KOG0530 Protein farnesyltransf 43.3 3.3E+02 0.0072 26.7 20.4 86 509-596 55-141 (318)
444 KOG4814 Uncharacterized conser 42.7 5.3E+02 0.012 28.9 19.2 85 650-736 365-455 (872)
445 PF10366 Vps39_1: Vacuolar sor 42.6 1.1E+02 0.0025 25.2 6.6 27 116-142 41-67 (108)
446 PF11663 Toxin_YhaV: Toxin wit 42.0 29 0.00064 29.5 3.1 34 123-158 104-137 (140)
447 PF05944 Phage_term_smal: Phag 41.4 2.3E+02 0.0051 24.4 8.9 30 818-847 52-81 (132)
448 PF11663 Toxin_YhaV: Toxin wit 41.1 33 0.00073 29.2 3.3 33 789-823 105-137 (140)
449 KOG2659 LisH motif-containing 40.4 1.3E+02 0.0029 28.5 7.3 101 775-877 22-131 (228)
450 PF10366 Vps39_1: Vacuolar sor 40.1 2.1E+02 0.0047 23.6 8.9 25 712-736 42-66 (108)
451 PF14689 SPOB_a: Sensor_kinase 39.5 79 0.0017 22.9 4.6 22 331-352 28-49 (62)
452 PF11838 ERAP1_C: ERAP1-like C 39.1 4.5E+02 0.0097 27.0 18.0 190 156-351 45-262 (324)
453 PF13929 mRNA_stabil: mRNA sta 38.7 4.2E+02 0.0091 26.5 17.7 118 127-245 141-262 (292)
454 PF07720 TPR_3: Tetratricopept 38.2 58 0.0012 20.4 3.2 18 819-836 6-23 (36)
455 cd00280 TRFH Telomeric Repeat 38.2 1.8E+02 0.0039 26.7 7.4 21 822-842 119-139 (200)
456 KOG2758 Translation initiation 37.9 4.4E+02 0.0096 26.6 14.5 80 623-703 112-196 (432)
457 KOG0686 COP9 signalosome, subu 37.8 5.1E+02 0.011 27.3 14.5 94 640-735 151-255 (466)
458 KOG2422 Uncharacterized conser 37.3 6.2E+02 0.013 28.1 16.5 134 674-807 284-447 (665)
459 KOG1114 Tripeptidyl peptidase 37.1 7.8E+02 0.017 29.3 14.4 74 830-903 1212-1286(1304)
460 COG5191 Uncharacterized conser 36.8 99 0.0021 30.7 6.1 76 635-712 103-179 (435)
461 smart00777 Mad3_BUB1_I Mad3/BU 36.5 2.7E+02 0.0059 23.8 8.7 42 622-663 82-123 (125)
462 PF15297 CKAP2_C: Cytoskeleton 36.3 1.4E+02 0.0031 30.4 7.3 63 796-860 120-186 (353)
463 KOG0991 Replication factor C, 36.1 4E+02 0.0087 25.6 13.3 38 741-779 236-273 (333)
464 PF11848 DUF3368: Domain of un 35.9 1.4E+02 0.003 20.2 5.2 29 233-261 14-42 (48)
465 PF10255 Paf67: RNA polymerase 35.4 86 0.0019 33.1 6.0 25 710-734 165-189 (404)
466 KOG4279 Serine/threonine prote 35.0 7.5E+02 0.016 28.4 15.1 52 786-852 351-402 (1226)
467 KOG0292 Vesicle coat complex C 34.7 75 0.0016 36.5 5.6 126 753-908 652-777 (1202)
468 PF11848 DUF3368: Domain of un 34.2 1.5E+02 0.0032 20.1 5.3 31 408-438 14-44 (48)
469 KOG0128 RNA-binding protein SA 33.4 8.4E+02 0.018 28.5 34.5 432 413-909 97-559 (881)
470 KOG4077 Cytochrome c oxidase, 32.9 2.9E+02 0.0063 23.5 7.2 45 170-214 68-112 (149)
471 KOG0687 26S proteasome regulat 32.9 5.5E+02 0.012 26.2 14.7 109 606-716 107-223 (393)
472 KOG1839 Uncharacterized protei 32.1 5.3E+02 0.012 31.8 12.0 91 646-736 939-1042(1236)
473 PF03745 DUF309: Domain of unk 32.1 1.4E+02 0.003 21.7 4.9 51 857-907 7-62 (62)
474 PF10475 DUF2450: Protein of u 32.0 4.2E+02 0.009 26.9 10.2 53 191-249 103-155 (291)
475 PRK10564 maltose regulon perip 31.4 91 0.002 31.1 5.0 41 219-259 254-295 (303)
476 PF13762 MNE1: Mitochondrial s 30.8 3.8E+02 0.0081 23.7 10.1 97 172-268 23-127 (145)
477 PF10475 DUF2450: Protein of u 30.8 4.6E+02 0.0099 26.6 10.3 53 296-354 103-155 (291)
478 KOG3824 Huntingtin interacting 30.7 1.6E+02 0.0035 29.2 6.4 76 759-854 112-189 (472)
479 cd02679 MIT_spastin MIT: domai 30.6 1.3E+02 0.0027 23.2 4.6 61 794-877 4-67 (79)
480 KOG3807 Predicted membrane pro 30.6 5.8E+02 0.013 25.8 13.9 109 688-807 230-339 (556)
481 COG4976 Predicted methyltransf 30.4 1.1E+02 0.0024 29.1 5.0 58 788-849 4-62 (287)
482 KOG2300 Uncharacterized conser 30.3 7.4E+02 0.016 26.9 34.3 408 498-907 8-508 (629)
483 COG4941 Predicted RNA polymera 29.9 6.2E+02 0.014 25.9 12.8 122 723-849 270-398 (415)
484 KOG4077 Cytochrome c oxidase, 29.9 3.1E+02 0.0067 23.3 6.9 46 727-772 67-112 (149)
485 PF09454 Vps23_core: Vps23 cor 29.8 89 0.0019 22.9 3.6 50 184-234 6-55 (65)
486 KOG1310 WD40 repeat protein [G 29.1 2.2E+02 0.0047 30.9 7.5 84 794-883 389-477 (758)
487 COG5116 RPN2 26S proteasome re 28.8 5.6E+02 0.012 28.2 10.4 24 679-702 213-236 (926)
488 cd00280 TRFH Telomeric Repeat 28.6 4E+02 0.0087 24.6 8.0 22 298-319 118-139 (200)
489 PF08311 Mad3_BUB1_I: Mad3/BUB 28.5 3.8E+02 0.0082 22.9 13.2 44 621-664 81-124 (126)
490 KOG4567 GTPase-activating prot 28.5 5.2E+02 0.011 26.0 9.3 42 277-318 264-305 (370)
491 PF05053 Menin: Menin; InterP 28.3 3.8E+02 0.0083 29.5 9.2 28 815-842 319-346 (618)
492 COG4976 Predicted methyltransf 28.2 1.3E+02 0.0027 28.7 5.0 52 615-668 7-58 (287)
493 COG4259 Uncharacterized protei 27.6 1.3E+02 0.0028 24.1 4.2 45 865-909 53-97 (121)
494 PRK14700 recombination factor 27.3 6.6E+02 0.014 25.4 17.4 36 723-758 140-175 (300)
495 PRK10564 maltose regulon perip 27.0 1.3E+02 0.0028 30.1 5.3 42 112-153 255-296 (303)
496 KOG1166 Mitotic checkpoint ser 26.3 2.3E+02 0.0049 34.1 7.9 97 11-108 36-142 (974)
497 PRK12798 chemotaxis protein; R 26.0 8.2E+02 0.018 26.1 21.6 193 545-744 125-330 (421)
498 PF11817 Foie-gras_1: Foie gra 25.7 4.4E+02 0.0095 25.9 9.0 21 750-770 184-204 (247)
499 COG0735 Fur Fe2+/Zn2+ uptake r 25.7 3.5E+02 0.0076 23.9 7.4 32 715-746 26-57 (145)
500 KOG0889 Histone acetyltransfer 24.7 2.2E+03 0.048 30.6 28.8 102 786-890 2743-2855(3550)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=5.6e-85 Score=764.56 Aligned_cols=678 Identities=20% Similarity=0.286 Sum_probs=644.4
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHCCCCCCHHHHH
Q 002549 111 DDTVQVYNAMMGIYARNGRFQKVQELLDLMRKRGCEPDLVSFNTLINARLRSGAMVPNLGVDLLNEVRRSGLRPDIITYN 190 (909)
Q Consensus 111 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 190 (909)
.++..++|.++.+|++.|++++|..+|+.|.+.|++|+..+|..++.+|.+.+.. ..+..++..+.+.+..++..++|
T Consensus 48 ~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~n 125 (857)
T PLN03077 48 SSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAV--EEGSRVCSRALSSHPSLGVRLGN 125 (857)
T ss_pred ccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCH--HHHHHHHHHHHHcCCCCCchHHH
Confidence 5678899999999999999999999999999999999999999999999988864 56899999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 002549 191 TIISACSRESNLEEAMKVYGDLEAHNCQPDLWTYNAMISVYGRCGLFEKAEQLFKELESKGFFPDAVTYNSLLYAFAREG 270 (909)
Q Consensus 191 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g 270 (909)
+|+.+|++.|+++.|.++|++|. .||+++||++|.+|++.|++++|+++|++|...|+.||..||+.++.+|++.+
T Consensus 126 ~li~~~~~~g~~~~A~~~f~~m~----~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~ 201 (857)
T PLN03077 126 AMLSMFVRFGELVHAWYVFGKMP----ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIP 201 (857)
T ss_pred HHHHHHHhCCChHHHHHHHhcCC----CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCcc
Confidence 99999999999999999999997 58999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 002549 271 NVEKVKEISENMLKMGFGKDEMTYNTIIHMYGKQGQHDVALQLYRDMKLSGRNPDVVTYTVLIDSLGKANKISEAANVMS 350 (909)
Q Consensus 271 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 350 (909)
+++.+.+++..+.+.|+.||..+++.++.+|++.|+++.|..+|++|. .||..+|+++|.+|++.|++++|+++|+
T Consensus 202 ~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~ 277 (857)
T PLN03077 202 DLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFF 277 (857)
T ss_pred chhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999997 5899999999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCC
Q 002549 351 EMLDASVKPTLRTYSALICGYAKAGNRLEAEKTFYCMRRSGIRPDHLAYSVMLDIFLRFNETNKAMMLYQEMVSNGFTPD 430 (909)
Q Consensus 351 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 430 (909)
+|.+.|+.||..||+.++.+|++.|+.+.|.+++..|.+.|+.||..+|++|+.+|++.|++++|.++|++|. .||
T Consensus 278 ~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d 353 (857)
T PLN03077 278 TMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKD 353 (857)
T ss_pred HHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999996 579
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHhcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 002549 431 QALYEIMIGVLGRENKGEEIRKVVRDMKELSGINMQEISSILVKGECYDHAAEILRSAIRNGIELDHEKLLSILSSYNVS 510 (909)
Q Consensus 431 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~d~~~~~~l~~~~~~~ 510 (909)
..+|++++.+|++.|++++|.++|++|.+ .|+.||..++..++.+|++.
T Consensus 354 ~~s~n~li~~~~~~g~~~~A~~lf~~M~~-------------------------------~g~~Pd~~t~~~ll~a~~~~ 402 (857)
T PLN03077 354 AVSWTAMISGYEKNGLPDKALETYALMEQ-------------------------------DNVSPDEITIASVLSACACL 402 (857)
T ss_pred eeeHHHHHHHHHhCCCHHHHHHHHHHHHH-------------------------------hCCCCCceeHHHHHHHHhcc
Confidence 99999999999999998888877777665 88999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhccCCcccchhhHHHHHHHHHhcccHHHHHHH
Q 002549 511 GRHLEACELIEFVKQHASESTPPLTQAFIIMLCKAQKLDAALEEYSNAWGFGFFSKSKTMYESLIHSCEYNERFAEASQV 590 (909)
Q Consensus 511 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 590 (909)
|+++.|.++++.+.+.|..++..+++.++.+|+++|++++|.++|+++.+ ++..+|+++|.+|++.|+.++|+.+
T Consensus 403 g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~-----~d~vs~~~mi~~~~~~g~~~eA~~l 477 (857)
T PLN03077 403 GDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE-----KDVISWTSIIAGLRLNNRCFEALIF 477 (857)
T ss_pred chHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC-----CCeeeHHHHHHHHHHCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999864 5788999999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCC
Q 002549 591 FSDMRFYNIEPSEDLYRSMVVAYCKMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCA 670 (909)
Q Consensus 591 ~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 670 (909)
|++|.. ++.||..||..++.+|++.|..+.+.+++..+.+.| .
T Consensus 478 f~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g------------------------------------~ 520 (857)
T PLN03077 478 FRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTG------------------------------------I 520 (857)
T ss_pred HHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhC------------------------------------C
Confidence 999986 699999999999999999999888888877766544 5
Q ss_pred CCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCchhhHHHHHHHHHhCCCCccHHHHHHH
Q 002549 671 PVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQALIVDGRLNELYVVIQELQDMDFKISKSSILLM 750 (909)
Q Consensus 671 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 750 (909)
.+|..++|+|+.+|+++|++++|.++|+.+ .||..+|+.++.+|+++|+.++|+++|++|.+.|+.||..||+.+
T Consensus 521 ~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~l 595 (857)
T PLN03077 521 GFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISL 595 (857)
T ss_pred CccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHH
Confidence 568889999999999999999999999987 579999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHH-hcCCCchHHHHHHHHHHHhccCchHHHHHHHHHHHHCCCCCCHHhHHHHHHHhhccCC
Q 002549 751 LDAFARSGNIFEVKKIYHGMK-AAGYFPTMYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDLSIWNSMLKLYTGIED 829 (909)
Q Consensus 751 ~~~~~~~g~~~~a~~~~~~~~-~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 829 (909)
+.+|.+.|++++|.++|+.|. +.|+.|+..+|++++++|++.|++++|++++++|. ++||..+|++|+.+|..+|+
T Consensus 596 l~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~---~~pd~~~~~aLl~ac~~~~~ 672 (857)
T PLN03077 596 LCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPDPAVWGALLNACRIHRH 672 (857)
T ss_pred HHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCC
Confidence 999999999999999999999 68999999999999999999999999999999984 79999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChh
Q 002549 830 FKKTIQVYQEIQEADLQPDE-DSFNTLIIMYCRDCRPEEGLSLMHEMRKLGLEPKLD 885 (909)
Q Consensus 830 ~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 885 (909)
.+.|....+++++ +.|+. ..|..+++.|+..|+|++|.++++.|.+.|+.+++.
T Consensus 673 ~e~~e~~a~~l~~--l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g 727 (857)
T PLN03077 673 VELGELAAQHIFE--LDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPG 727 (857)
T ss_pred hHHHHHHHHHHHh--hCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCC
Confidence 9999999999999 89965 777888999999999999999999999998887753
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.3e-77 Score=702.47 Aligned_cols=675 Identities=18% Similarity=0.244 Sum_probs=632.4
Q ss_pred ChhhHHHHHHH-hccCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhC-CCCCHHHHHHHH
Q 002549 44 TPTDYCFVVKW-VGQVSWQRALEVYEWLNLRHWFSPNARMLATILAVLGKANQENLAVETFMRAESA-VDDTVQVYNAMM 121 (909)
Q Consensus 44 ~~~~~~~~~~~-~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~l~ 121 (909)
++..+..+++. +..|++..|+.+|..|.. .+.+|+..+|..++..+.+.+.++.+..++..+... ..+++.++|+|+
T Consensus 50 ~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~-~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li 128 (857)
T PLN03077 50 STHDSNSQLRALCSHGQLEQALKLLESMQE-LRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAML 128 (857)
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHh-cCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHH
Confidence 34445555554 456799999999999954 458899999999999999999999999999987655 457788999999
Q ss_pred HHHHHcCChhHHHHHHHHHHHcCCCCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 002549 122 GIYARNGRFQKVQELLDLMRKRGCEPDLVSFNTLINARLRSGAMVPNLGVDLLNEVRRSGLRPDIITYNTIISACSRESN 201 (909)
Q Consensus 122 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 201 (909)
.+|++.|+++.|+++|++|. .||.++||++|.+|++.|.+ ++|..+|++|...|+.||.+||++++.+|++.++
T Consensus 129 ~~~~~~g~~~~A~~~f~~m~----~~d~~~~n~li~~~~~~g~~--~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~ 202 (857)
T PLN03077 129 SMFVRFGELVHAWYVFGKMP----ERDLFSWNVLVGGYAKAGYF--DEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPD 202 (857)
T ss_pred HHHHhCCChHHHHHHHhcCC----CCCeeEHHHHHHHHHhCCCH--HHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccc
Confidence 99999999999999999997 47999999999999999974 6799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002549 202 LEEAMKVYGDLEAHNCQPDLWTYNAMISVYGRCGLFEKAEQLFKELESKGFFPDAVTYNSLLYAFAREGNVEKVKEISEN 281 (909)
Q Consensus 202 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 281 (909)
+..+.+++..|.+.|+.||+.+||+||.+|++.|++++|.++|++|.. ||.++|+.+|.+|++.|++++|.++|.+
T Consensus 203 ~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~ 278 (857)
T PLN03077 203 LARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFT 278 (857)
T ss_pred hhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999964 6899999999999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 002549 282 MLKMGFGKDEMTYNTIIHMYGKQGQHDVALQLYRDMKLSGRNPDVVTYTVLIDSLGKANKISEAANVMSEMLDASVKPTL 361 (909)
Q Consensus 282 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 361 (909)
|.+.|+.||..+|+.++.+|++.|+.+.|.+++..|.+.|..||..+|++|+.+|++.|++++|.++|++|. .||.
T Consensus 279 M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~ 354 (857)
T PLN03077 279 MRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDA 354 (857)
T ss_pred HHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCe
Confidence 999999999999999999999999999999999999999999999999999999999999999999999996 4789
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 002549 362 RTYSALICGYAKAGNRLEAEKTFYCMRRSGIRPDHLAYSVMLDIFLRFNETNKAMMLYQEMVSNGFTPDQALYEIMIGVL 441 (909)
Q Consensus 362 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~ 441 (909)
.+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.|.+.|+.|+..+++.|+.+|
T Consensus 355 ~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y 434 (857)
T PLN03077 355 VSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMY 434 (857)
T ss_pred eeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHhcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 002549 442 GRENKGEEIRKVVRDMKELSGINMQEISSILVKGECYDHAAEILRSAIRNGIELDHEKLLSILSSYNVSGRHLEACELIE 521 (909)
Q Consensus 442 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~a~~~~~ 521 (909)
++.|++++|.++|++|.+.+...++.+...+.+.|+.++|+.+|++|.. ++.||..|+..++.+|++.|..+.+.+++.
T Consensus 435 ~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~ 513 (857)
T PLN03077 435 SKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHA 513 (857)
T ss_pred HHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHH
Confidence 9999999999999999988888889999999999999999999999985 699999999999999999999999999999
Q ss_pred HHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhccCCcccchhhHHHHHHHHHhcccHHHHHHHHHHHHhCCCCC
Q 002549 522 FVKQHASESTPPLTQAFIIMLCKAQKLDAALEEYSNAWGFGFFSKSKTMYESLIHSCEYNERFAEASQVFSDMRFYNIEP 601 (909)
Q Consensus 522 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 601 (909)
.+.+.+..++..++++++.+|+++|++++|.++|+.+ +++..+|+++|.+|++.|+.++|+++|++|.+.|+.|
T Consensus 514 ~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~------~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~P 587 (857)
T PLN03077 514 HVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH------EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNP 587 (857)
T ss_pred HHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc------CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Confidence 9999999999999999999999999999999999887 4699999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhhcCChhhHHHHHHHHH-HcCCCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHH
Q 002549 602 SEDLYRSMVVAYCKMDFPETAHFIADQAE-KKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNAL 680 (909)
Q Consensus 602 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 680 (909)
|..||..++.+|++.|.+++|..+|+.|. ..|+.|+ ...|..+++.|++.|++++|.++++++. ..||..+|++|
T Consensus 588 d~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~-~~~y~~lv~~l~r~G~~~eA~~~~~~m~---~~pd~~~~~aL 663 (857)
T PLN03077 588 DEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPN-LKHYACVVDLLGRAGKLTEAYNFINKMP---ITPDPAVWGAL 663 (857)
T ss_pred CcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCc-hHHHHHHHHHHHhCCCHHHHHHHHHHCC---CCCCHHHHHHH
Confidence 99999999999999999999999999998 5788874 5788999999999999999999999874 67899999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCchhhHHHHHHHHHhCCCCccHH
Q 002549 681 IKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQALIVDGRLNELYVVIQELQDMDFKISKS 745 (909)
Q Consensus 681 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 745 (909)
+.+|...|+.+.+....+++++..|. +...|..+.+.|+..|+|++|.++.+.|.+.|+++++.
T Consensus 664 l~ac~~~~~~e~~e~~a~~l~~l~p~-~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g 727 (857)
T PLN03077 664 LNACRIHRHVELGELAAQHIFELDPN-SVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPG 727 (857)
T ss_pred HHHHHHcCChHHHHHHHHHHHhhCCC-CcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCC
Confidence 99999999999999999999887665 66778888899999999999999999999998887764
No 3
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=5.4e-66 Score=587.66 Aligned_cols=545 Identities=17% Similarity=0.223 Sum_probs=335.5
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHhhhC--CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChHHHHHH
Q 002549 78 PNARMLATILAVLGKANQENLAVETFMRAESA--VDDTVQVYNAMMGIYARNGRFQKVQELLDLMRKRGCEPDLVSFNTL 155 (909)
Q Consensus 78 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l 155 (909)
++...|..++..+++.|++++|+++|+.|... .+++..+++.++..|.+.|.+++|+.+|+.|.. ||..+|+.+
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~L 443 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNML 443 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHH
Confidence 34445555666666666666666666666544 234455566666666666666666666666653 666666666
Q ss_pred HHHHHHcCCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 002549 156 INARLRSGAMVPNLGVDLLNEVRRSGLRPDIITYNTIISACSRESNLEEAMKVYGDLEAHNCQPDLWTYNAMISVYGRCG 235 (909)
Q Consensus 156 l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 235 (909)
|.+|++.|++ +.|..+|+.|.+.|+.||.++|++||.+|++.|++++|.++|++|.+.|+.||.++|+.||.+|++.|
T Consensus 444 L~a~~k~g~~--e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G 521 (1060)
T PLN03218 444 MSVCASSQDI--DGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAG 521 (1060)
T ss_pred HHHHHhCcCH--HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCc
Confidence 6666666643 44666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred CHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 002549 236 LFEKAEQLFKELESKGFFPDAVTYNSLLYAFAREGNVEKVKEISENMLK--MGFGKDEMTYNTIIHMYGKQGQHDVALQL 313 (909)
Q Consensus 236 ~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 313 (909)
++++|.++|++|...|+.||..+|+.+|.+|++.|++++|.++|++|.+ .|+.||..+|+.+|.+|++.|++++|.++
T Consensus 522 ~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~el 601 (1060)
T PLN03218 522 QVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEV 601 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 6666666666666666666666666666666666666666666666654 45566666666666666666666666666
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 002549 314 YRDMKLSGRNPDVVTYTVLIDSLGKANKISEAANVMSEMLDASVKPTLRTYSALICGYAKAGNRLEAEKTFYCMRRSGIR 393 (909)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 393 (909)
|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|+.|.+.|+.
T Consensus 602 f~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~ 681 (1060)
T PLN03218 602 YQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIK 681 (1060)
T ss_pred HHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred CCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCChHHHHHHHH
Q 002549 394 PDHLAYSVMLDIFLRFNETNKAMMLYQEMVSNGFTPDQALYEIMIGVLGRENKGEEIRKVVRDMKELSGINMQEISSILV 473 (909)
Q Consensus 394 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 473 (909)
||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.|+.+|++.|++++|.+++++|.+
T Consensus 682 pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~-------------- 747 (1060)
T PLN03218 682 LGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKR-------------- 747 (1060)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--------------
Confidence 666666666666666666666666666666666666666666666666666666666666666554
Q ss_pred hcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 002549 474 KGECYDHAAEILRSAIRNGIELDHEKLLSILSSYNVSGRHLEACELIEFVKQHASESTPPLTQAFIIMLCKAQKLDAALE 553 (909)
Q Consensus 474 ~~~~~~~a~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 553 (909)
.|+.||..+|..++.+|++.|++++|.+++..+.+.+..++..+++.++.++. +.+++|..
T Consensus 748 -----------------~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~--~~y~ka~~ 808 (1060)
T PLN03218 748 -----------------LGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL--RRFEKACA 808 (1060)
T ss_pred -----------------cCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHHHHHhh
Confidence 55666666666666666666666666666666666666666666666654422 12333333
Q ss_pred HHHHhhccCCcccchhhHHHHHHHHHhcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcC
Q 002549 554 EYSNAWGFGFFSKSKTMYESLIHSCEYNERFAEASQVFSDMRFYNIEPSEDLYRSMVVAYCKMDFPETAHFIADQAEKKG 633 (909)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 633 (909)
..+.+.... + .......+..++|+.+|++|++.|+.||..||..++.+++..+..+.+..+++.+...+
T Consensus 809 l~~~v~~f~--~---------g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~ 877 (1060)
T PLN03218 809 LGEPVVSFD--S---------GRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISA 877 (1060)
T ss_pred hhhhhhhhh--c---------cccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCC
Confidence 332222110 0 00111112234566666666666666666666666655555566666555555544333
Q ss_pred CCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChH
Q 002549 634 IPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRK 675 (909)
Q Consensus 634 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 675 (909)
.. .+...|+.+++.+++. .++|..+++++.+.|+.|+..
T Consensus 878 ~~-~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 878 DS-QKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred CC-cchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 22 2345566666655321 246666666666666666543
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=5.4e-66 Score=587.66 Aligned_cols=559 Identities=17% Similarity=0.262 Sum_probs=490.1
Q ss_pred HHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCC-CCChHHHHHHHHHHHHcCCCCchHHHHHHHH
Q 002549 98 LAVETFMRAESAVDDTVQVYNAMMGIYARNGRFQKVQELLDLMRKRGC-EPDLVSFNTLINARLRSGAMVPNLGVDLLNE 176 (909)
Q Consensus 98 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~-~~~~~~~~~ll~~~~~~~~~~~~~a~~~~~~ 176 (909)
.++...+..... .++...|..++..|++.|++++|+++|++|.+.|+ +++..+++.++.+|++.|.. .+|..+|+.
T Consensus 355 ~~~~~~~~~~~~-~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~--~eAl~lf~~ 431 (1060)
T PLN03218 355 NSLAAYNGGVSG-KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAV--KEAFRFAKL 431 (1060)
T ss_pred hhHHHhccccCC-CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCH--HHHHHHHHH
Confidence 334444444333 56778899999999999999999999999999986 57888888999999998864 568888888
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCH
Q 002549 177 VRRSGLRPDIITYNTIISACSRESNLEEAMKVYGDLEAHNCQPDLWTYNAMISVYGRCGLFEKAEQLFKELESKGFFPDA 256 (909)
Q Consensus 177 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 256 (909)
|.. ||..+|+.++.+|++.|+++.|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||.
T Consensus 432 M~~----pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~Pdv 507 (1060)
T PLN03218 432 IRN----PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANV 507 (1060)
T ss_pred cCC----CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCH
Confidence 864 8999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--cCCCCCHHHHHHHHH
Q 002549 257 VTYNSLLYAFAREGNVEKVKEISENMLKMGFGKDEMTYNTIIHMYGKQGQHDVALQLYRDMKL--SGRNPDVVTYTVLID 334 (909)
Q Consensus 257 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~~li~ 334 (909)
.+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.. .|+.||..+|+++|.
T Consensus 508 vTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ 587 (1060)
T PLN03218 508 HTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMK 587 (1060)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999976 578999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhH
Q 002549 335 SLGKANKISEAANVMSEMLDASVKPTLRTYSALICGYAKAGNRLEAEKTFYCMRRSGIRPDHLAYSVMLDIFLRFNETNK 414 (909)
Q Consensus 335 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 414 (909)
+|++.|++++|.++|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++
T Consensus 588 ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~ee 667 (1060)
T PLN03218 588 ACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDK 667 (1060)
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHhcccHHHHHHHHHHHHHcCCC
Q 002549 415 AMMLYQEMVSNGFTPDQALYEIMIGVLGRENKGEEIRKVVRDMKELSGINMQEISSILVKGECYDHAAEILRSAIRNGIE 494 (909)
Q Consensus 415 A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 494 (909)
|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+ .|+.
T Consensus 668 A~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~-------------------------------~g~~ 716 (1060)
T PLN03218 668 AFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKS-------------------------------IKLR 716 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-------------------------------cCCC
Confidence 999999999999999999999999999999999999999998876 7889
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhccCCcccchhhHHHH
Q 002549 495 LDHEKLLSILSSYNVSGRHLEACELIEFVKQHASESTPPLTQAFIIMLCKAQKLDAALEEYSNAWGFGFFSKSKTMYESL 574 (909)
Q Consensus 495 ~d~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 574 (909)
||..+|+.++.+|++.|++++|.++|+.|.+.+..|+..++..++..|++.|+++.|.++|..+.+.+ +.|+..+|+.+
T Consensus 717 PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~G-i~pd~~tynsL 795 (1060)
T PLN03218 717 PTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDG-IKPNLVMCRCI 795 (1060)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999888 67899999999
Q ss_pred HHHHHhcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCCchHHHHHHHHhhhcCC
Q 002549 575 IHSCEYNERFAEASQVFSDMRFYNIEPSEDLYRSMVVAYCKMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKL 654 (909)
Q Consensus 575 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 654 (909)
+..|. +++++|..+.+.+...+. .......+..+.|..+|++|.+.|+.|+.. ++..++..++..+.
T Consensus 796 Iglc~--~~y~ka~~l~~~v~~f~~----------g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~-T~~~vL~cl~~~~~ 862 (1060)
T PLN03218 796 TGLCL--RRFEKACALGEPVVSFDS----------GRPQIENKWTSWALMVYRETISAGTLPTME-VLSQVLGCLQLPHD 862 (1060)
T ss_pred HHHHH--HHHHHHhhhhhhhhhhhc----------cccccccchHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhccccc
Confidence 87654 356777666555543210 011112234567999999999999888644 45556677777788
Q ss_pred hHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcc
Q 002549 655 WQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVD 710 (909)
Q Consensus 655 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 710 (909)
...+.++++.+...+.+++..+|+.++.++.+. .++|..+|+.|.+.|..|+..
T Consensus 863 ~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 863 ATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred HHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 888888888877776777888888888876322 357888888888888887764
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=3.4e-60 Score=541.74 Aligned_cols=476 Identities=20% Similarity=0.302 Sum_probs=422.5
Q ss_pred CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 002549 218 QPDLWTYNAMISVYGRCGLFEKAEQLFKELESKG-FFPDAVTYNSLLYAFAREGNVEKVKEISENMLKMGFGKDEMTYNT 296 (909)
Q Consensus 218 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 296 (909)
.++..+|+.+|.+|.+.|++++|+++|+.|...+ +.||..+|+.++.+|++.++++.+.+++..|.+.|+.||..+|+.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 4466788888888888888888888888888754 678889999999999999999999999999998898899999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 002549 297 IIHMYGKQGQHDVALQLYRDMKLSGRNPDVVTYTVLIDSLGKANKISEAANVMSEMLDASVKPTLRTYSALICGYAKAGN 376 (909)
Q Consensus 297 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 376 (909)
++.+|++.|+++.|.++|++|. .||..+|++++.+|++.|++++|+++|++|.+.|+.|+..||+.++.+|++.|.
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~ 239 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGS 239 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCc
Confidence 9999999999999999999987 488889999999999999999999999999888888888888888888888888
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 002549 377 RLEAEKTFYCMRRSGIRPDHLAYSVMLDIFLRFNETNKAMMLYQEMVSNGFTPDQALYEIMIGVLGRENKGEEIRKVVRD 456 (909)
Q Consensus 377 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 456 (909)
.+.+.+++..+.+.|+.||..+|++|+++|++.|++++|.++|++|.
T Consensus 240 ~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~--------------------------------- 286 (697)
T PLN03081 240 ARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP--------------------------------- 286 (697)
T ss_pred HHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC---------------------------------
Confidence 88888888888888888888888888888888888888877777663
Q ss_pred HHHhcCCChHHHHHHHHhcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHH
Q 002549 457 MKELSGINMQEISSILVKGECYDHAAEILRSAIRNGIELDHEKLLSILSSYNVSGRHLEACELIEFVKQHASESTPPLTQ 536 (909)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 536 (909)
T Consensus 287 -------------------------------------------------------------------------------- 286 (697)
T PLN03081 287 -------------------------------------------------------------------------------- 286 (697)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhccCCcccchhhHHHHHHHHHhcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhc
Q 002549 537 AFIIMLCKAQKLDAALEEYSNAWGFGFFSKSKTMYESLIHSCEYNERFAEASQVFSDMRFYNIEPSEDLYRSMVVAYCKM 616 (909)
Q Consensus 537 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 616 (909)
+++..+|+.+|.+|++.|++++|+++|++|.+.|+.||..||..++.+|++.
T Consensus 287 ----------------------------~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~ 338 (697)
T PLN03081 287 ----------------------------EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRL 338 (697)
T ss_pred ----------------------------CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Confidence 1244567777777778888888888888888889999999999999998888
Q ss_pred CChhhHHHHHHHHHHcCCCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHH
Q 002549 617 DFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAV 696 (909)
Q Consensus 617 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 696 (909)
|++++|.+++..+.+. |.++|..++++|+.+|+++|++++|.++
T Consensus 339 g~~~~a~~i~~~m~~~------------------------------------g~~~d~~~~~~Li~~y~k~G~~~~A~~v 382 (697)
T PLN03081 339 ALLEHAKQAHAGLIRT------------------------------------GFPLDIVANTALVDLYSKWGRMEDARNV 382 (697)
T ss_pred cchHHHHHHHHHHHHh------------------------------------CCCCCeeehHHHHHHHHHCCCHHHHHHH
Confidence 8887777776666553 4667899999999999999999999999
Q ss_pred HHHHHHcCCCCCcccHHHHHHHHHhcCchhhHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-cCC
Q 002549 697 FNTMMRDGPSPTVDSINGLLQALIVDGRLNELYVVIQELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYHGMKA-AGY 775 (909)
Q Consensus 697 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~ 775 (909)
|++| ..||..+||.++.+|+++|+.++|+++|++|.+.|+.||..||+.++.+|.+.|++++|.++|+.|.+ .|+
T Consensus 383 f~~m----~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~ 458 (697)
T PLN03081 383 FDRM----PRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRI 458 (697)
T ss_pred HHhC----CCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCC
Confidence 9999 45899999999999999999999999999999999999999999999999999999999999999986 699
Q ss_pred CchHHHHHHHHHHHhccCchHHHHHHHHHHHHCCCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHcCCCCC-hhhHHH
Q 002549 776 FPTMYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDLSIWNSMLKLYTGIEDFKKTIQVYQEIQEADLQPD-EDSFNT 854 (909)
Q Consensus 776 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~ 854 (909)
.|+..+|++++++|++.|++++|.++++++ ++.|+..+|++++.+|+.+|+++.|..+++++.+ +.|+ ..+|..
T Consensus 459 ~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~ 533 (697)
T PLN03081 459 KPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVV 533 (697)
T ss_pred CCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHH
Confidence 999999999999999999999999999876 5799999999999999999999999999999987 8896 589999
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHcCCCCC
Q 002549 855 LIIMYCRDCRPEEGLSLMHEMRKLGLEPK 883 (909)
Q Consensus 855 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 883 (909)
++.+|++.|++++|.+++++|.+.|+.+.
T Consensus 534 L~~~y~~~G~~~~A~~v~~~m~~~g~~k~ 562 (697)
T PLN03081 534 LLNLYNSSGRQAEAAKVVETLKRKGLSMH 562 (697)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCccC
Confidence 99999999999999999999999887543
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.1e-59 Score=535.30 Aligned_cols=473 Identities=18% Similarity=0.274 Sum_probs=421.5
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcC-CCCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHCCCCCCHHHHH
Q 002549 112 DTVQVYNAMMGIYARNGRFQKVQELLDLMRKRG-CEPDLVSFNTLINARLRSGAMVPNLGVDLLNEVRRSGLRPDIITYN 190 (909)
Q Consensus 112 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g-~~~~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 190 (909)
.+..+|+.+|.+|.+.|++++|+++|+.|...+ +.||..+|+.++.+|++.+.. +.+..++..|.+.|+.||..+||
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~--~~a~~l~~~m~~~g~~~~~~~~n 162 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSI--RCVKAVYWHVESSGFEPDQYMMN 162 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCH--HHHHHHHHHHHHhCCCcchHHHH
Confidence 456689999999999999999999999999864 789999999999999999864 56899999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 002549 191 TIISACSRESNLEEAMKVYGDLEAHNCQPDLWTYNAMISVYGRCGLFEKAEQLFKELESKGFFPDAVTYNSLLYAFAREG 270 (909)
Q Consensus 191 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g 270 (909)
.|+.+|++.|+++.|.++|++|. .||.++||++|.+|++.|++++|+++|++|.+.|+.|+..||+.++.+|++.|
T Consensus 163 ~Li~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~ 238 (697)
T PLN03081 163 RVLLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLG 238 (697)
T ss_pred HHHHHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCC
Confidence 99999999999999999999997 58999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 002549 271 NVEKVKEISENMLKMGFGKDEMTYNTIIHMYGKQGQHDVALQLYRDMKLSGRNPDVVTYTVLIDSLGKANKISEAANVMS 350 (909)
Q Consensus 271 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 350 (909)
..+.+.+++..+.+.|+.+|..+|+.|+++|+++|++++|.++|++|. .+|.++|+++|.+|++.|++++|+++|+
T Consensus 239 ~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~ 314 (697)
T PLN03081 239 SARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYY 314 (697)
T ss_pred cHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999997 5799999999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCC
Q 002549 351 EMLDASVKPTLRTYSALICGYAKAGNRLEAEKTFYCMRRSGIRPDHLAYSVMLDIFLRFNETNKAMMLYQEMVSNGFTPD 430 (909)
Q Consensus 351 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 430 (909)
+|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+|++|+++|++.|++++|.++|++|. .||
T Consensus 315 ~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d 390 (697)
T PLN03081 315 EMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKN 390 (697)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999996 579
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHhcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 002549 431 QALYEIMIGVLGRENKGEEIRKVVRDMKELSGINMQEISSILVKGECYDHAAEILRSAIRNGIELDHEKLLSILSSYNVS 510 (909)
Q Consensus 431 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~d~~~~~~l~~~~~~~ 510 (909)
..+|++||.+|++.|+.++|.++|++|.+ .|+.||..||+.++.+|.+.
T Consensus 391 ~~t~n~lI~~y~~~G~~~~A~~lf~~M~~-------------------------------~g~~Pd~~T~~~ll~a~~~~ 439 (697)
T PLN03081 391 LISWNALIAGYGNHGRGTKAVEMFERMIA-------------------------------EGVAPNHVTFLAVLSACRYS 439 (697)
T ss_pred eeeHHHHHHHHHHcCCHHHHHHHHHHHHH-------------------------------hCCCCCHHHHHHHHHHHhcC
Confidence 99999999999999998888877777665 89999999999999999999
Q ss_pred CCHHHHHHHHHHHHhc-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhccCCcccchhhHHHHHHHHHhcccHHHHHH
Q 002549 511 GRHLEACELIEFVKQH-ASESTPPLTQAFIIMLCKAQKLDAALEEYSNAWGFGFFSKSKTMYESLIHSCEYNERFAEASQ 589 (909)
Q Consensus 511 ~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 589 (909)
|.+++|.++|+.|.+. +. .|+..+|+.++.+|++.|++++|.+
T Consensus 440 g~~~~a~~~f~~m~~~~g~------------------------------------~p~~~~y~~li~~l~r~G~~~eA~~ 483 (697)
T PLN03081 440 GLSEQGWEIFQSMSENHRI------------------------------------KPRAMHYACMIELLGREGLLDEAYA 483 (697)
T ss_pred CcHHHHHHHHHHHHHhcCC------------------------------------CCCccchHhHHHHHHhcCCHHHHHH
Confidence 9999999999888753 33 4566677777777777777777777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcC
Q 002549 590 VFSDMRFYNIEPSEDLYRSMVVAYCKMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRC 669 (909)
Q Consensus 590 ~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 669 (909)
++++| +..|+..+|..++.+|...|+.+.|...++++.+ +.|+
T Consensus 484 ~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~-------------------------------- 526 (697)
T PLN03081 484 MIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPE-------------------------------- 526 (697)
T ss_pred HHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCC--------------------------------
Confidence 77665 4678888888888888888888777777766643 4443
Q ss_pred CCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 002549 670 APVDRKVWNALIKAYAASGCYERARAVFNTMMRDGP 705 (909)
Q Consensus 670 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 705 (909)
+...|..|+++|++.|++++|.++++.|.+.|.
T Consensus 527 ---~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~ 559 (697)
T PLN03081 527 ---KLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGL 559 (697)
T ss_pred ---CCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 344555555666666666666666666665554
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=2.1e-49 Score=480.66 Aligned_cols=828 Identities=13% Similarity=0.032 Sum_probs=567.9
Q ss_pred HHHhccCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCH-----------------
Q 002549 52 VKWVGQVSWQRALEVYEWLNLRHWFSPNARMLATILAVLGKANQENLAVETFMRAESAVDDTV----------------- 114 (909)
Q Consensus 52 ~~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----------------- 114 (909)
...+.+|++..|+..|+...... |.++..+..+..++.+.|+++.|...|+++....+++.
T Consensus 30 ~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~ 107 (899)
T TIGR02917 30 KSYLQKNKYKAAIIQLKNALQKD--PNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAYLLQGKFQ 107 (899)
T ss_pred HHHHHcCChHhHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChhhhHHHHHHHHHHCCCHH
Confidence 33444556666666665554332 44555555566666666666666666655554433333
Q ss_pred ------------------HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChHHHHHHHHHHHHcCCCCchHHHHHHHH
Q 002549 115 ------------------QVYNAMMGIYARNGRFQKVQELLDLMRKRGCEPDLVSFNTLINARLRSGAMVPNLGVDLLNE 176 (909)
Q Consensus 115 ------------------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~a~~~~~~ 176 (909)
..+..+...|...|++++|...|+++.+.. +.+...+..+...+...|+ .++|..+++.
T Consensus 108 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~--~~~A~~~~~~ 184 (899)
T TIGR02917 108 QVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAID-PRSLYAKLGLAQLALAENR--FDEARALIDE 184 (899)
T ss_pred HHHHhhcccccCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHCCC--HHHHHHHHHH
Confidence 344444455555555555555555544432 1223344444444444443 2345555555
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCH
Q 002549 177 VRRSGLRPDIITYNTIISACSRESNLEEAMKVYGDLEAHNCQPDLWTYNAMISVYGRCGLFEKAEQLFKELESKGFFPDA 256 (909)
Q Consensus 177 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 256 (909)
+.+.. +++..++..+...+...|++++|...|++..+.+ +.+..++..++..+...|++++|...++.+.+.... +.
T Consensus 185 ~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~-~~ 261 (899)
T TIGR02917 185 VLTAD-PGNVDALLLKGDLLLSLGNIELALAAYRKAIALR-PNNPAVLLALATILIEAGEFEEAEKHADALLKKAPN-SP 261 (899)
T ss_pred HHHhC-CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-Cc
Confidence 44432 2234444555555555555555555555554443 334445555555555555555555555555443222 11
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 002549 257 VTYNSLLYAFAREGNVEKVKEISENMLKMGFGKDEMTYNTIIHMYGKQGQHDVALQLYRDMKLSGRNPDVVTYTVLIDSL 336 (909)
Q Consensus 257 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 336 (909)
..+......+...|++++|...++++.+.+ +.+...+..+...+...|++++|...|+++.+.. +.+...+..+...+
T Consensus 262 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~ 339 (899)
T TIGR02917 262 LAHYLKALVDFQKKNYEDARETLQDALKSA-PEYLPALLLAGASEYQLGNLEQAYQYLNQILKYA-PNSHQARRLLASIQ 339 (899)
T ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 222222223344555555555555555443 1222333344445556666666666666665543 23444555666666
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHH
Q 002549 337 GKANKISEAANVMSEMLDASVKPTLRTYSALICGYAKAGNRLEAEKTFYCMRRSGIRPDHLAYSVMLDIFLRFNETNKAM 416 (909)
Q Consensus 337 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 416 (909)
.+.|++++|...++.+.... +.+...+..+...+.+.|++++|.+.|+++.+.. +.+...+..+...+...|++++|.
T Consensus 340 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 417 (899)
T TIGR02917 340 LRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAI 417 (899)
T ss_pred HHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHH
Confidence 77777777777777766543 2355666667777777777777777777776643 234556666666777777777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCChHH---HHHHHHhcccHHHHHHHHHHHHHcCC
Q 002549 417 MLYQEMVSNGFTPDQALYEIMIGVLGRENKGEEIRKVVRDMKELSGINMQE---ISSILVKGECYDHAAEILRSAIRNGI 493 (909)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~a~~~~~~~~~~~~ 493 (909)
..++.+.+... ........++..+.+.|++++|.++++.+....+..+.. +..++...|++++|...|+++++..
T Consensus 418 ~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~- 495 (899)
T TIGR02917 418 ADLETAAQLDP-ELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE- 495 (899)
T ss_pred HHHHHHHhhCC-cchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-
Confidence 77777765421 123344455667777777777777777777665555443 4456777788888888888877643
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhccCCcccchhhHHH
Q 002549 494 ELDHEKLLSILSSYNVSGRHLEACELIEFVKQHASESTPPLTQAFIIMLCKAQKLDAALEEYSNAWGFGFFSKSKTMYES 573 (909)
Q Consensus 494 ~~d~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 573 (909)
+.+...+..+...+...|++++|...++.+.+..+. +...+..++..+.+.|+.++|+..++++.... |.+...+..
T Consensus 496 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~ 572 (899)
T TIGR02917 496 PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPK-NLRAILALAGLYLRTGNEEEAVAWLEKAAELN--PQEIEPALA 572 (899)
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--ccchhHHHH
Confidence 334455666777788888888888888888776654 45566777778888888888888888887665 667778888
Q ss_pred HHHHHHhcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCCchHHHHHHHHhhhcC
Q 002549 574 LIHSCEYNERFAEASQVFSDMRFYNIEPSEDLYRSMVVAYCKMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLK 653 (909)
Q Consensus 574 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 653 (909)
++..+...|++++|..+++.+... .+.+..++..+...+...|++++|+..++.+++ ..|+++..+..++..+...|
T Consensus 573 l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~ 649 (899)
T TIGR02917 573 LAQYYLGKGQLKKALAILNEAADA-APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLA--LQPDSALALLLLADAYAVMK 649 (899)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcC
Confidence 888888888888888888888754 245677888888888888999999999888887 56778888888899999999
Q ss_pred ChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCchhhHHHHHH
Q 002549 654 LWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQALIVDGRLNELYVVIQ 733 (909)
Q Consensus 654 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 733 (909)
++++|...++++.+. .|.+...+..++..+...|++++|..+++.+.+..+. +...+..++..+...|++++|.+.++
T Consensus 650 ~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~ 727 (899)
T TIGR02917 650 NYAKAITSLKRALEL-KPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPK-AALGFELEGDLYLRQKDYPAAIQAYR 727 (899)
T ss_pred CHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-ChHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999988876 5667888888888999999999999999998887765 66778888888999999999999999
Q ss_pred HHHhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccCchHHHHHHHHHHHHCCCCCC
Q 002549 734 ELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYHGMKAAGYFPTMYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPD 813 (909)
Q Consensus 734 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 813 (909)
++.+.+ |+..++..++.++.+.|++++|.+.++++.+.. +.+...+..++..|.+.|++++|++.|+++.+. .+++
T Consensus 728 ~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~p~~ 803 (899)
T TIGR02917 728 KALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK-APDN 803 (899)
T ss_pred HHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh-CCCC
Confidence 988765 333666678888999999999999999988753 346788889999999999999999999999874 2456
Q ss_pred HHhHHHHHHHhhccCCHHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHH
Q 002549 814 LSIWNSMLKLYTGIEDFKKTIQVYQEIQEADLQPDE-DSFNTLIIMYCRDCRPEEGLSLMHEMRKLGLEPKLDTYKSLIS 892 (909)
Q Consensus 814 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 892 (909)
..+++.++..+...|+ ++|+++++++++ +.|+. ..+..++.++...|++++|.++++++.+.+.. ++.++..++.
T Consensus 804 ~~~~~~l~~~~~~~~~-~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~ 879 (899)
T TIGR02917 804 AVVLNNLAWLYLELKD-PRALEYAEKALK--LAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE-AAAIRYHLAL 879 (899)
T ss_pred HHHHHHHHHHHHhcCc-HHHHHHHHHHHh--hCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHH
Confidence 6789999999999999 889999999999 78855 67779999999999999999999999976433 7889999999
Q ss_pred HHhccCCHHHHHHhhcC
Q 002549 893 AFGKQQQLEQAEELLKS 909 (909)
Q Consensus 893 ~~~~~g~~~~A~~~~~~ 909 (909)
++.+.|+.++|.+++++
T Consensus 880 ~~~~~g~~~~A~~~~~~ 896 (899)
T TIGR02917 880 ALLATGRKAEARKELDK 896 (899)
T ss_pred HHHHcCCHHHHHHHHHH
Confidence 99999999999998863
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=5.3e-47 Score=459.60 Aligned_cols=792 Identities=12% Similarity=0.067 Sum_probs=679.9
Q ss_pred ccCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCChhHHHH
Q 002549 56 GQVSWQRALEVYEWLNLRHWFSPNARMLATILAVLGKANQENLAVETFMRAESAVDDTVQVYNAMMGIYARNGRFQKVQE 135 (909)
Q Consensus 56 ~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 135 (909)
..|++..|+..|...... ..+.+...+..+...+.+.|+++.|...|+++....+.+..++..+...+...|++++|..
T Consensus 102 ~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 180 (899)
T TIGR02917 102 LQGKFQQVLDELPGKTLL-DDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARA 180 (899)
T ss_pred HCCCHHHHHHhhcccccC-CchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHH
Confidence 456788888777654211 1344566778888899999999999999999988878888999999999999999999999
Q ss_pred HHHHHHHcCCCCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 002549 136 LLDLMRKRGCEPDLVSFNTLINARLRSGAMVPNLGVDLLNEVRRSGLRPDIITYNTIISACSRESNLEEAMKVYGDLEAH 215 (909)
Q Consensus 136 ~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 215 (909)
+++++.+.. +++...+..+...+...|+ .++|...|+...+..+ .+..++..++..+...|++++|...++.+.+.
T Consensus 181 ~~~~~~~~~-~~~~~~~~~~~~~~~~~g~--~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 256 (899)
T TIGR02917 181 LIDEVLTAD-PGNVDALLLKGDLLLSLGN--IELALAAYRKAIALRP-NNPAVLLALATILIEAGEFEEAEKHADALLKK 256 (899)
T ss_pred HHHHHHHhC-CCChHHHHHHHHHHHhcCC--HHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999998764 4567778888788888886 4679999999887654 46788899999999999999999999999887
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 002549 216 NCQPDLWTYNAMISVYGRCGLFEKAEQLFKELESKGFFPDAVTYNSLLYAFAREGNVEKVKEISENMLKMGFGKDEMTYN 295 (909)
Q Consensus 216 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 295 (909)
. +.+...+......+...|++++|...|+++.+.+.. +...+..+...+...|++++|...++.+.+.. +.+...+.
T Consensus 257 ~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~ 333 (899)
T TIGR02917 257 A-PNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPE-YLPALLLAGASEYQLGNLEQAYQYLNQILKYA-PNSHQARR 333 (899)
T ss_pred C-CCCchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-chhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHH
Confidence 5 344555555666778899999999999999886533 33445556667889999999999999998865 45677888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 002549 296 TIIHMYGKQGQHDVALQLYRDMKLSGRNPDVVTYTVLIDSLGKANKISEAANVMSEMLDASVKPTLRTYSALICGYAKAG 375 (909)
Q Consensus 296 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 375 (909)
.+...+.+.|++++|...++++.... +.+...+..+...+.+.|++++|.++|+++.+.. +.+...+..+...+...|
T Consensus 334 ~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 411 (899)
T TIGR02917 334 LLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQG 411 (899)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCC
Confidence 89999999999999999999998765 4567789999999999999999999999998764 236677888888999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHH
Q 002549 376 NRLEAEKTFYCMRRSGIRPDHLAYSVMLDIFLRFNETNKAMMLYQEMVSNGFTPDQALYEIMIGVLGRENKGEEIRKVVR 455 (909)
Q Consensus 376 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 455 (909)
++++|.+.++.+.+... ........++..+.+.|++++|..+++.+... .+++..++..+...+...|++++|.+.++
T Consensus 412 ~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 489 (899)
T TIGR02917 412 DPSEAIADLETAAQLDP-ELGRADLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAFE 489 (899)
T ss_pred ChHHHHHHHHHHHhhCC-cchhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 99999999999988643 23455667788899999999999999999875 35567889999999999999999999999
Q ss_pred HHHHhcCCChHH---HHHHHHhcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCCh
Q 002549 456 DMKELSGINMQE---ISSILVKGECYDHAAEILRSAIRNGIELDHEKLLSILSSYNVSGRHLEACELIEFVKQHASESTP 532 (909)
Q Consensus 456 ~~~~~~~~~~~~---~~~~~~~~~~~~~a~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 532 (909)
++.+..+..+.. +..++...|++++|...++++.... +.+...+..+...+...|+.++|...++.+...++. +.
T Consensus 490 ~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~ 567 (899)
T TIGR02917 490 KALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQ-EI 567 (899)
T ss_pred HHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-ch
Confidence 999887777665 4467788999999999999998764 346677888999999999999999999999887665 45
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHhhccCCcccchhhHHHHHHHHHhcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 002549 533 PLTQAFIIMLCKAQKLDAALEEYSNAWGFGFFSKSKTMYESLIHSCEYNERFAEASQVFSDMRFYNIEPSEDLYRSMVVA 612 (909)
Q Consensus 533 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 612 (909)
..+..++..|.+.|++++|+..++.+.... |.+...|..++.++...|++++|...|+.+.+.. +.+...+..+...
T Consensus 568 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 644 (899)
T TIGR02917 568 EPALALAQYYLGKGQLKKALAILNEAADAA--PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADA 644 (899)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 567788999999999999999999998765 7788999999999999999999999999998653 3456778888999
Q ss_pred HhhcCChhhHHHHHHHHHHcCCCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHH
Q 002549 613 YCKMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYER 692 (909)
Q Consensus 613 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 692 (909)
+...|++++|...++++.. ..|++...+..++..+...|++++|..+++.+.+. .+.+...+..++.++...|++++
T Consensus 645 ~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~ 721 (899)
T TIGR02917 645 YAVMKNYAKAITSLKRALE--LKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQ-HPKAALGFELEGDLYLRQKDYPA 721 (899)
T ss_pred HHHcCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CcCChHHHHHHHHHHHHCCCHHH
Confidence 9999999999999999987 67889999999999999999999999999999887 56788889999999999999999
Q ss_pred HHHHHHHHHHcCCCCCcccHHHHHHHHHhcCchhhHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 002549 693 ARAVFNTMMRDGPSPTVDSINGLLQALIVDGRLNELYVVIQELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYHGMKA 772 (909)
Q Consensus 693 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 772 (909)
|...|+++++.++.+ .++..++.++...|++++|.+.++++.+.. +.+..++..+...|...|++++|...|+++.+
T Consensus 722 A~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 798 (899)
T TIGR02917 722 AIQAYRKALKRAPSS--QNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVK 798 (899)
T ss_pred HHHHHHHHHhhCCCc--hHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 999999999976553 678889999999999999999999998865 45677888899999999999999999999998
Q ss_pred cCCCchHHHHHHHHHHHhccCchHHHHHHHHHHHHCCCCCCH-HhHHHHHHHhhccCCHHHHHHHHHHHHHcCCCC-Chh
Q 002549 773 AGYFPTMYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDL-SIWNSMLKLYTGIEDFKKTIQVYQEIQEADLQP-DED 850 (909)
Q Consensus 773 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~ 850 (909)
.. +++..+++.++..+.+.|+ ++|+.+++++.+ ..|+. .++..++.++...|++++|.++++++++ ..| ++.
T Consensus 799 ~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~--~~~~~~~ 872 (899)
T TIGR02917 799 KA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALK--LAPNIPAILDTLGWLLVEKGEADRALPLLRKAVN--IAPEAAA 872 (899)
T ss_pred hC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHh--hCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCChH
Confidence 64 3577889999999999999 889999999987 34544 6788889999999999999999999999 667 678
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHH
Q 002549 851 SFNTLIIMYCRDCRPEEGLSLMHEMR 876 (909)
Q Consensus 851 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 876 (909)
++.+++.+|++.|++++|.+++++|+
T Consensus 873 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 873 IRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 99999999999999999999999986
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=2e-29 Score=302.70 Aligned_cols=684 Identities=13% Similarity=0.089 Sum_probs=457.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChHHHHHHHHHHHHc
Q 002549 83 LATILAVLGKANQENLAVETFMRAESAVDDTVQVYNAMMGIYARNGRFQKVQELLDLMRKRGCEPDLVSFNTLINARLRS 162 (909)
Q Consensus 83 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 162 (909)
+-..++.....++.+.|.+.+.++....|.++.++..++..+.+.|+.++|.+.+++..+.. |+...+..+.
T Consensus 31 Ll~q~~~~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~--P~~~~~~~~~------ 102 (1157)
T PRK11447 31 LLEQVRLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA--PDSNAYRSSR------ 102 (1157)
T ss_pred HHHHHHHHHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCChHHHHHH------
Confidence 55667788889999999999999998888999999999999999999999999999999874 4433221111
Q ss_pred CCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHHcCCHhHHH
Q 002549 163 GAMVPNLGVDLLNEVRRSGLRPDIITYNTIISACSRESNLEEAMKVYGDLEAHNCQPDLW-TYNAMISVYGRCGLFEKAE 241 (909)
Q Consensus 163 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~ 241 (909)
..+. . ..|+......+...+.+.|++++|...|+.+.+.+ +|+.. ....+.......|+.++|+
T Consensus 103 ------------~~~~-~-~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~ 167 (1157)
T PRK11447 103 ------------TTML-L-STPEGRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAI 167 (1157)
T ss_pred ------------HHHH-h-cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHH
Confidence 1111 1 12444445666777889999999999999998765 44432 1111222223458899999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 002549 242 QLFKELESKGFFPDAVTYNSLLYAFAREGNVEKVKEISENMLKMGFGKDEMTYNTIIHMYGKQGQHDVALQLYRDMKLSG 321 (909)
Q Consensus 242 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 321 (909)
+.|+++.+..+. +...+..+...+...|++++|.+.++++.+.. +. ....+...+..+...+
T Consensus 168 ~~L~~ll~~~P~-~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~--~~---------------~~~aa~~~~~~l~~~~ 229 (1157)
T PRK11447 168 NQLQRLNADYPG-NTGLRNTLALLLFSSGRRDEGFAVLEQMAKSP--AG---------------RDAAAQLWYGQIKDMP 229 (1157)
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhCC--Cc---------------hHHHHHHHHHHHhccC
Confidence 999998887433 56667778888888899999999998887632 11 0111222222222222
Q ss_pred CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 002549 322 RNPDV-VTYTVLIDSLGKANKISEAANVMSEMLDASVKPTLRTYSALICGYAKAGNRLEAEKTFYCMRRSGIRPDHLAYS 400 (909)
Q Consensus 322 ~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 400 (909)
..+.. ..+...+..+-.....+.|...+..+......|.... ......+...|++++|+..|++..+.. +.+...+.
T Consensus 230 ~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~-~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~ 307 (1157)
T PRK11447 230 VSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRA-RAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALG 307 (1157)
T ss_pred CChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHH-HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 11111 1222223333333344556666666544322333222 233455667788888888888877753 23667777
Q ss_pred HHHHHHHHcCCHhHHHHHHHHHHHCCCCCCH---HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHhccc
Q 002549 401 VMLDIFLRFNETNKAMMLYQEMVSNGFTPDQ---ALYEIMIGVLGRENKGEEIRKVVRDMKELSGINMQEISSILVKGEC 477 (909)
Q Consensus 401 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (909)
.+...+.+.|++++|...|++.++. .|+. ..|..++... .
T Consensus 308 ~Lg~~~~~~g~~~eA~~~l~~Al~~--~p~~~~~~~~~~ll~~~----~------------------------------- 350 (1157)
T PRK11447 308 ALGQAYSQQGDRARAVAQFEKALAL--DPHSSNRDKWESLLKVN----R------------------------------- 350 (1157)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--CCCccchhHHHHHHHhh----h-------------------------------
Confidence 7788888888888888888887764 2321 1122111100 0
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 002549 478 YDHAAEILRSAIRNGIELDHEKLLSILSSYNVSGRHLEACELIEFVKQHASESTPPLTQAFIIMLCKAQKLDAALEEYSN 557 (909)
Q Consensus 478 ~~~a~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 557 (909)
..........+...|++++|...++.+++..|. +...+..+...+...|++++|++.|++
T Consensus 351 -------------------~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~y~~ 410 (1157)
T PRK11447 351 -------------------YWLLIQQGDAALKANNLAQAERLYQQARQVDNT-DSYAVLGLGDVAMARKDYAAAERYYQQ 410 (1157)
T ss_pred -------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 000111123334455555555555555554443 233344455556666666666666666
Q ss_pred hhccCCcccchhhHHHHHHHHHhcccHHHHHHHHHHHHhCCCC--------CCHHHHHHHHHHHhhcCChhhHHHHHHHH
Q 002549 558 AWGFGFFSKSKTMYESLIHSCEYNERFAEASQVFSDMRFYNIE--------PSEDLYRSMVVAYCKMDFPETAHFIADQA 629 (909)
Q Consensus 558 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--------p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 629 (909)
+.+.. |.+...+..+...+. .++.++|+.+++.+...... .....+......+...|++++|+..++++
T Consensus 411 aL~~~--p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~A 487 (1157)
T PRK11447 411 ALRMD--PGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQR 487 (1157)
T ss_pred HHHhC--CCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 65543 445555555555553 34556666666544221000 01123445666778899999999999999
Q ss_pred HHcCCCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCc
Q 002549 630 EKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTV 709 (909)
Q Consensus 630 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 709 (909)
++ +.|+++.++..++.+|...|++++|+..++++++. .|.++..+..+...+...|++++|+..++++......++.
T Consensus 488 l~--~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~-~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~ 564 (1157)
T PRK11447 488 LA--LDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQ-KPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNI 564 (1157)
T ss_pred HH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhH
Confidence 88 78999999999999999999999999999999876 4667777777777778889999999999887543222222
Q ss_pred c---------cHHHHHHHHHhcCchhhHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHH
Q 002549 710 D---------SINGLLQALIVDGRLNELYVVIQELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYHGMKAAGYFPTMY 780 (909)
Q Consensus 710 ~---------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~ 780 (909)
. .+..++..+...|++++|.++++. .+.+...+..+...+.+.|++++|+..|+++.+.. +.+..
T Consensus 565 ~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~ 638 (1157)
T PRK11447 565 QELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNAD 638 (1157)
T ss_pred HHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHH
Confidence 1 123456678899999999999882 23445566778899999999999999999999853 23678
Q ss_pred HHHHHHHHHhccCchHHHHHHHHHHHHCCCCCCH-HhHHHHHHHhhccCCHHHHHHHHHHHHHcCCCCCh-------hhH
Q 002549 781 LYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDL-SIWNSMLKLYTGIEDFKKTIQVYQEIQEADLQPDE-------DSF 852 (909)
Q Consensus 781 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-------~~~ 852 (909)
.+..++..|...|++++|++.++.+.+ ..|+. .++..+..++...|++++|.++++++++ ..|+. ..+
T Consensus 639 a~~~la~~~~~~g~~~eA~~~l~~ll~--~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~--~~~~~~~~~~~a~~~ 714 (1157)
T PRK11447 639 ARLGLIEVDIAQGDLAAARAQLAKLPA--TANDSLNTQRRVALAWAALGDTAAAQRTFNRLIP--QAKSQPPSMESALVL 714 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhc--cCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhh--hCccCCcchhhHHHH
Confidence 889999999999999999999999886 45554 5677788889999999999999999998 44421 356
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHH-cCCCC
Q 002549 853 NTLIIMYCRDCRPEEGLSLMHEMRK-LGLEP 882 (909)
Q Consensus 853 ~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p 882 (909)
..++..+...|++++|+..|+++.. .++.|
T Consensus 715 ~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~~ 745 (1157)
T PRK11447 715 RDAARFEAQTGQPQQALETYKDAMVASGITP 745 (1157)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC
Confidence 6778999999999999999999975 44544
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=4.4e-30 Score=308.43 Aligned_cols=650 Identities=13% Similarity=0.067 Sum_probs=416.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHH---------
Q 002549 189 YNTIISACSRESNLEEAMKVYGDLEAHNCQPDLWTYNAMISVYGRCGLFEKAEQLFKELESKGFFPDAVTY--------- 259 (909)
Q Consensus 189 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~--------- 259 (909)
....++.+...++.+.|.+.+.++.... +.|+.++..++..+.+.|+.++|.+.+++..+.. |+...+
T Consensus 31 Ll~q~~~~~~~~~~d~a~~~l~kl~~~~-p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~--P~~~~~~~~~~~~~~ 107 (1157)
T PRK11447 31 LLEQVRLGEATHREDLVRQSLYRLELID-PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA--PDSNAYRSSRTTMLL 107 (1157)
T ss_pred HHHHHHHHHhhCChHHHHHHHHHHHccC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHh
Confidence 3444566777788888888888887764 5567778888888888888888888888887764 332222
Q ss_pred --------HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHH
Q 002549 260 --------NSLLYAFAREGNVEKVKEISENMLKMGFGKDEM-TYNTIIHMYGKQGQHDVALQLYRDMKLSGRNPDVVTYT 330 (909)
Q Consensus 260 --------~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 330 (909)
......+.+.|++++|.+.++.+.+.. +++.. ....+.......|+.++|++.++++.+.. +.+...+.
T Consensus 108 ~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~ 185 (1157)
T PRK11447 108 STPEGRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRN 185 (1157)
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 122223444555555555555554432 12211 11111111112345555555555554442 11233344
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHc
Q 002549 331 VLIDSLGKANKISEAANVMSEMLDASVKPTLRTYSALICGYAKAGNRLEAEKTFYCMRRSGIRPD-HLAYSVMLDIFLRF 409 (909)
Q Consensus 331 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~ 409 (909)
.+...+...|+.++|+..++++.... +. ....+...+..+...+..++ ...+...+..+-..
T Consensus 186 ~LA~ll~~~g~~~eAl~~l~~~~~~~--~~---------------~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~ 248 (1157)
T PRK11447 186 TLALLLFSSGRRDEGFAVLEQMAKSP--AG---------------RDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDG 248 (1157)
T ss_pred HHHHHHHccCCHHHHHHHHHHHhhCC--Cc---------------hHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCc
Confidence 44444555555555555555544321 00 00001111111111111111 01111111111111
Q ss_pred CCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHhcccHHHHHHHHHHHH
Q 002549 410 NETNKAMMLYQEMVSNGFTPDQALYEIMIGVLGRENKGEEIRKVVRDMKELSGINMQEISSILVKGECYDHAAEILRSAI 489 (909)
Q Consensus 410 ~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 489 (909)
...+.|...+.........|+... ... ...+...|++++|+..|++++
T Consensus 249 ~~~~~A~~~L~~~~~~~~dp~~~~-~~~-------------------------------G~~~~~~g~~~~A~~~l~~aL 296 (1157)
T PRK11447 249 DSVAAARSQLAEQQKQLADPAFRA-RAQ-------------------------------GLAAVDSGQGGKAIPELQQAV 296 (1157)
T ss_pred hHHHHHHHHHHHHHHhccCcchHH-HHH-------------------------------HHHHHHCCCHHHHHHHHHHHH
Confidence 122233333333322211111110 111 223333444445555554444
Q ss_pred HcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChh-------------hHHHHHHHHHhcCCHHHHHHHHH
Q 002549 490 RNGIELDHEKLLSILSSYNVSGRHLEACELIEFVKQHASESTPP-------------LTQAFIIMLCKAQKLDAALEEYS 556 (909)
Q Consensus 490 ~~~~~~d~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------------~~~~l~~~~~~~g~~~~A~~~~~ 556 (909)
+.. +.+...+..+..++...|++++|...|+.+++..+..... ........+.+.|++++|++.|+
T Consensus 297 ~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~ 375 (1157)
T PRK11447 297 RAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQ 375 (1157)
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 332 2244555566666666666666666666666655443211 11223556778999999999999
Q ss_pred HhhccCCcccchhhHHHHHHHHHhcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCC--
Q 002549 557 NAWGFGFFSKSKTMYESLIHSCEYNERFAEASQVFSDMRFYNIEPSEDLYRSMVVAYCKMDFPETAHFIADQAEKKGI-- 634 (909)
Q Consensus 557 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-- 634 (909)
++.... |.+...+..+..++...|++++|++.|++..+.. +.+...+..+...+. .+++++|..+++.+.....
T Consensus 376 ~Al~~~--P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~ 451 (1157)
T PRK11447 376 QARQVD--NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRS 451 (1157)
T ss_pred HHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHH
Confidence 999876 7788899999999999999999999999998643 223555666666654 4678999888765432100
Q ss_pred -----CCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCc
Q 002549 635 -----PFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTV 709 (909)
Q Consensus 635 -----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 709 (909)
..-....+..++..+...|++++|++.|+++++. .|.++.++..++.+|...|++++|...++++++..|. +.
T Consensus 452 ~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~-~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~-~~ 529 (1157)
T PRK11447 452 IDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL-DPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPN-DP 529 (1157)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CH
Confidence 0001234567888899999999999999999987 5678889999999999999999999999999987765 55
Q ss_pred ccHHHHHHHHHhcCchhhHHHHHHHHHhCCCCccHH---------HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHH
Q 002549 710 DSINGLLQALIVDGRLNELYVVIQELQDMDFKISKS---------SILLMLDAFARSGNIFEVKKIYHGMKAAGYFPTMY 780 (909)
Q Consensus 710 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---------~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~ 780 (909)
..+..+...+...|++++|+..++++......++.. .+..+...+...|+.++|..+++. .+++..
T Consensus 530 ~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~ 604 (1157)
T PRK11447 530 EQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTR 604 (1157)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCch
Confidence 556666667788999999999999876543332221 223456788899999999999872 234566
Q ss_pred HHHHHHHHHhccCchHHHHHHHHHHHHCCCCCC-HHhHHHHHHHhhccCCHHHHHHHHHHHHHcCCCCCh-hhHHHHHHH
Q 002549 781 LYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPD-LSIWNSMLKLYTGIEDFKKTIQVYQEIQEADLQPDE-DSFNTLIIM 858 (909)
Q Consensus 781 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~ 858 (909)
.+..+...+.+.|++++|++.|+++++ ..|+ ...+..++.+|...|++++|++.++++++ ..|+. .....++.+
T Consensus 605 ~~~~La~~~~~~g~~~~A~~~y~~al~--~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~--~~p~~~~~~~~la~~ 680 (1157)
T PRK11447 605 IDLTLADWAQQRGDYAAARAAYQRVLT--REPGNADARLGLIEVDIAQGDLAAARAQLAKLPA--TANDSLNTQRRVALA 680 (1157)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc--cCCCChHHHHHHHHH
Confidence 778899999999999999999999998 3565 57889999999999999999999999998 78865 667789999
Q ss_pred HHhcCChhhHHHHHHHHHHcCC--CC---ChhhHHHHHHHHhccCCHHHHHHhhc
Q 002549 859 YCRDCRPEEGLSLMHEMRKLGL--EP---KLDTYKSLISAFGKQQQLEQAEELLK 908 (909)
Q Consensus 859 ~~~~g~~~~A~~~~~~~~~~~~--~p---~~~~~~~l~~~~~~~g~~~~A~~~~~ 908 (909)
+...|++++|.++++++.+... .| +...+..++..+...|+.++|...++
T Consensus 681 ~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~ 735 (1157)
T PRK11447 681 WAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYK 735 (1157)
T ss_pred HHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999999999986321 22 23467778899999999999999875
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=100.00 E-value=2.7e-27 Score=269.50 Aligned_cols=659 Identities=11% Similarity=-0.005 Sum_probs=431.0
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 002549 197 SRESNLEEAMKVYGDLEAHNCQPDLWTYNAMISVYGRCGLFEKAEQLFKELESKGFFPDAVTYNSLLYAFAREGNVEKVK 276 (909)
Q Consensus 197 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 276 (909)
...|++++|+..|+...+.. +.+..++..|...|.+.|++++|+..+++..+.. |+...|..++..+ +++++|.
T Consensus 55 ~~~Gd~~~A~~~l~~Al~~d-P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld--P~n~~~~~~La~i---~~~~kA~ 128 (987)
T PRK09782 55 QKNNDEATAIREFEYIHQQV-PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH--PGDARLERSLAAI---PVEVKSV 128 (987)
T ss_pred HhCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHHHHHHHh---ccChhHH
Confidence 34499999999999998876 4458888999999999999999999999998873 4444444444333 8888999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHH--------HHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHH-HHHHHhcCCHHHHHH
Q 002549 277 EISENMLKMGFGKDEMTYNTIIHM--------YGKQGQHDVALQLYRDMKLSGRNPDVVTYTVL-IDSLGKANKISEAAN 347 (909)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~l~~~--------~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-i~~~~~~g~~~~A~~ 347 (909)
.+++++.+.. +.+..++..+... |.+. ++|.+.++ .......|+..+.... ...|.+.|++++|+.
T Consensus 129 ~~ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~ 203 (987)
T PRK09782 129 TTVEELLAQQ-KACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADT 203 (987)
T ss_pred HHHHHHHHhC-CCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHH
Confidence 9999999876 4456666666655 6555 44444444 3333334445555544 889999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCC
Q 002549 348 VMSEMLDASVKPTLRTYSALICGYAK-AGNRLEAEKTFYCMRRSGIRPDHLAYSVMLDIFLRFNETNKAMMLYQEMVSNG 426 (909)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 426 (909)
++.++.+.+. .+..-...+...|.. .++ +.+..++.. .++.+......++..+.+.|+.++|..+++++...-
T Consensus 204 lL~~L~k~~p-l~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~ 277 (987)
T PRK09782 204 LYNEARQQNT-LSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLF 277 (987)
T ss_pred HHHHHHhcCC-CCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccc
Confidence 9999998863 345556677777777 466 777777543 234678888899999999999999999999876542
Q ss_pred C-CCCHHHHHHHHHHHhcCCCHH-HHHHHH-HHHHHhcCCChHHHHHHHHhcccHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 002549 427 F-TPDQALYEIMIGVLGRENKGE-EIRKVV-RDMKELSGINMQEISSILVKGECYDHAAEILRSAIRNGIELDHEKLLSI 503 (909)
Q Consensus 427 ~-~~~~~~~~~ll~~~~~~g~~~-~a~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~d~~~~~~l 503 (909)
. .|+..+|..++.-+ +... .+..-+ ++.........-.+...+.+.+.++.+.++. .+.|..... .+
T Consensus 278 ~~~~~~~~~~~~l~r~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~-~~ 347 (987)
T PRK09782 278 TTDAQEKSWLYLLSKY---SANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLL------ATLPANEML-EE 347 (987)
T ss_pred cCCCccHHHHHHHHhc---cCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHh------cCCCcchHH-HH
Confidence 2 35555555544332 2221 111111 1111100001112345667777777555442 133333322 22
Q ss_pred HHHHh-ccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhcc-CCcccchhhHHHHHHHHHhc
Q 002549 504 LSSYN-VSGRHLEACELIEFVKQHASESTPPLTQAFIIMLCKAQKLDAALEEYSNAWGF-GFFSKSKTMYESLIHSCEYN 581 (909)
Q Consensus 504 ~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~li~~~~~~ 581 (909)
-.+.. ..+...++...+..+.+..+. +......+.....+.|+.++|..+|+..... +....+......++..+..+
T Consensus 348 r~~~~~~~~~~~~~~~~~~~~y~~~~~-~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 426 (987)
T PRK09782 348 RYAVSVATRNKAEALRLARLLYQQEPA-NLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESH 426 (987)
T ss_pred HHhhccccCchhHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhC
Confidence 22222 336777777777777665443 3444555666677888888888888888762 11111334455777777777
Q ss_pred ccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHH-cCCCCC--CchHHHHHHHHhhhcCChHHH
Q 002549 582 ERFAEASQVFSDMRFYNIEPSEDLYRSMVVAYCKMDFPETAHFIADQAEK-KGIPFE--DLSIYVDIIDAYGRLKLWQKA 658 (909)
Q Consensus 582 g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~--~~~~~~~l~~~~~~~~~~~~A 658 (909)
+......++..-. .+++...- |.-.|+..++...++.... .+..|+ +..++..++.++.. ++.++|
T Consensus 427 ~~~~~~~~~~~l~----~~~~~~~~------~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eA 495 (987)
T PRK09782 427 PYLATPAKVAILS----KPLPLAEQ------RQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVA 495 (987)
T ss_pred CcccchHHHHHhc----cccccchh------HHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHH
Confidence 6633222221111 11111111 1122333333333333322 225566 77888888888876 788888
Q ss_pred HHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCchhhHHHHHHHHHhC
Q 002549 659 ESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQALIVDGRLNELYVVIQELQDM 738 (909)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 738 (909)
+..+.+.... .|+......++..+...|++++|...|+++.... |+...+..++.++.+.|++++|...+++..+.
T Consensus 496 i~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~--p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l 571 (987)
T PRK09782 496 LYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLHD--MSNEDLLAAANTAQAAGNGAARDRWLQQAEQR 571 (987)
T ss_pred HHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhccC--CCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 8888877765 2343333344555567888999998888876542 33445667777888888988899888888876
Q ss_pred CCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccCchHHHHHHHHHHHHCCCCCCH-HhH
Q 002549 739 DFKISKSSILLMLDAFARSGNIFEVKKIYHGMKAAGYFPTMYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDL-SIW 817 (909)
Q Consensus 739 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~ 817 (909)
+. .....+..+.......|++++|...+++.++.. |+...+..++..+.+.|++++|+..++++++ ..|+. ..+
T Consensus 572 ~P-~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~--l~Pd~~~a~ 646 (987)
T PRK09782 572 GL-GDNALYWWLHAQRYIPGQPELALNDLTRSLNIA--PSANAYVARATIYRQRHNVPAAVSDLRAALE--LEPNNSNYQ 646 (987)
T ss_pred CC-ccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHH
Confidence 52 222233333444455688999999988888743 6677888888888889999999999988887 45655 567
Q ss_pred HHHHHHhhccCCHHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCC-hhhHHHHHHHHh
Q 002549 818 NSMLKLYTGIEDFKKTIQVYQEIQEADLQPDE-DSFNTLIIMYCRDCRPEEGLSLMHEMRKLGLEPK-LDTYKSLISAFG 895 (909)
Q Consensus 818 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~ 895 (909)
+.++.++...|++++|++.++++++ +.|+. ..+.+++.++...|++++|+..+++..+ ..|+ ..+....+....
T Consensus 647 ~nLG~aL~~~G~~eeAi~~l~~AL~--l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~--l~P~~a~i~~~~g~~~~ 722 (987)
T PRK09782 647 AALGYALWDSGDIAQSREMLERAHK--GLPDDPALIRQLAYVNQRLDDMAATQHYARLVID--DIDNQALITPLTPEQNQ 722 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCCchhhhhhhHHHH
Confidence 7777788888899999999999888 78854 7788888999999999999999888884 4565 355556666677
Q ss_pred ccCCHHHHHHhh
Q 002549 896 KQQQLEQAEELL 907 (909)
Q Consensus 896 ~~g~~~~A~~~~ 907 (909)
+..+++.|.+-+
T Consensus 723 ~~~~~~~a~~~~ 734 (987)
T PRK09782 723 QRFNFRRLHEEV 734 (987)
T ss_pred HHHHHHHHHHHH
Confidence 777777776644
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.98 E-value=1.7e-25 Score=254.83 Aligned_cols=682 Identities=10% Similarity=0.015 Sum_probs=356.0
Q ss_pred HhcCChhHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChHHHHHHHHHHHHcCCCCchHH
Q 002549 91 GKANQENLAVETFMRAESAVDDTVQVYNAMMGIYARNGRFQKVQELLDLMRKRGCEPDLVSFNTLINARLRSGAMVPNLG 170 (909)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~a 170 (909)
...|++++|+..|+++....|.++.++..|...|...|++++|+..+++..+. .|+...|..++..+ ++ ..+|
T Consensus 55 ~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l--dP~n~~~~~~La~i---~~--~~kA 127 (987)
T PRK09782 55 QKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKR--HPGDARLERSLAAI---PV--EVKS 127 (987)
T ss_pred HhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHHHHh---cc--ChhH
Confidence 34489999999999998888888999999999999999999999999988876 45444444433222 22 2345
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHH--------HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH-HHHHHHcCCHhHHH
Q 002549 171 VDLLNEVRRSGLRPDIITYNTIISA--------CSRESNLEEAMKVYGDLEAHNCQPDLWTYNAM-ISVYGRCGLFEKAE 241 (909)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~li~~--------~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-i~~~~~~g~~~~A~ 241 (909)
..+++++.+..+. +..++..+... |.+. ++|.+.++ .......|+..+.... ...|.+.|++++|+
T Consensus 128 ~~~ye~l~~~~P~-n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai 202 (987)
T PRK09782 128 VTTVEELLAQQKA-CDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQAD 202 (987)
T ss_pred HHHHHHHHHhCCC-ChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHH
Confidence 6666666654322 23333333333 4333 33333333 2222122233333333 55666666666666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 002549 242 QLFKELESKGFFPDAVTYNSLLYAFAR-EGNVEKVKEISENMLKMGFGKDEMTYNTIIHMYGKQGQHDVALQLYRDMKLS 320 (909)
Q Consensus 242 ~~~~~m~~~~~~~~~~~~~~ll~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 320 (909)
+++.++.+.+.. +..-...+..+|.. .++ +.+..++.. .+..+...+..++..|.+.|+.++|.++++++...
T Consensus 203 ~lL~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~ 276 (987)
T PRK09782 203 TLYNEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPL 276 (987)
T ss_pred HHHHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCccc
Confidence 666666655432 23333344444444 234 444444221 12234555555555555555555555555554322
Q ss_pred CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HH
Q 002549 321 GRN-PDVVTYTVLIDSLGKANKISEAANVMSEMLDASVKPTLRTYSALICGYAKAGNRLEAEKTFYCMRRSGIRPDH-LA 398 (909)
Q Consensus 321 ~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~ 398 (909)
-.. |+..+|.-++ .+.+... ..|..-|.+ + ..++. ..
T Consensus 277 ~~~~~~~~~~~~~l---~r~~~~~----------------------------------~~~~~~~~~--~--~~~~~~~~ 315 (987)
T PRK09782 277 FTTDAQEKSWLYLL---SKYSANP----------------------------------VQALANYTV--Q--FADNRQYV 315 (987)
T ss_pred ccCCCccHHHHHHH---HhccCch----------------------------------hhhccchhh--h--hHHHHHHH
Confidence 111 2222222221 1111111 001111111 0 00110 11
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHH--HHhcCCCHHHHHHHHHHHHHhcCCChHH---HHHHHH
Q 002549 399 YSVMLDIFLRFNETNKAMMLYQEMVSNGFTPDQALYEIMIG--VLGRENKGEEIRKVVRDMKELSGINMQE---ISSILV 473 (909)
Q Consensus 399 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~--~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~~~ 473 (909)
...++..+.+.++++.+.++.. +.|..... .++ .....+...++.+.++.+.+..+..+.. .+...+
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~--~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~ 387 (987)
T PRK09782 316 VGATLPVLLKEGQYDAAQKLLA------TLPANEML--EERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLM 387 (987)
T ss_pred HHHHHHHHHhccHHHHHHHHhc------CCCcchHH--HHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 1123455555666654443321 23322221 222 1122355556666666666654544444 345566
Q ss_pred hcccHHHHHHHHHHHHHc-C-CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHH
Q 002549 474 KGECYDHAAEILRSAIRN-G-IELDHEKLLSILSSYNVSGRHLEACELIEFVKQHASESTPPLTQAFIIMLCKAQKLDAA 551 (909)
Q Consensus 474 ~~~~~~~a~~~~~~~~~~-~-~~~d~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 551 (909)
++|++++|..++++.... + ..++......++..|...+......++.......+.. .. .....+.-....+
T Consensus 388 ~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~----~~---~~~~~~~~~~~~~ 460 (987)
T PRK09782 388 QNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLA----EQ---RQWQSQLPGIADN 460 (987)
T ss_pred HcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccc----hh---HHHHhhhhhhhhh
Confidence 777777777777777652 1 2223333446677777766644433332221110000 00 0000011111222
Q ss_pred HHHHHHhhccCCccc--chhhHHHHHHHHHhcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHH
Q 002549 552 LEEYSNAWGFGFFSK--SKTMYESLIHSCEYNERFAEASQVFSDMRFYNIEPSEDLYRSMVVAYCKMDFPETAHFIADQA 629 (909)
Q Consensus 552 ~~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 629 (909)
...+.++.... |+ +...|..+..++.. ++.++|+..+.+.... .|+...
T Consensus 461 ~~~~~~al~~~--p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~------------------------ 511 (987)
T PRK09782 461 CPAIVRLLGDM--SPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQ------------------------ 511 (987)
T ss_pred HHHHHHhcccC--CCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHH------------------------
Confidence 33333333221 44 55556666655554 5555566655554432 233222
Q ss_pred HHcCCCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCc
Q 002549 630 EKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTV 709 (909)
Q Consensus 630 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 709 (909)
...++..+...|++++|...++++... +|+...+..++.++.+.|++++|...++++++..|. +.
T Consensus 512 ------------~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~-~~ 576 (987)
T PRK09782 512 ------------HRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLG-DN 576 (987)
T ss_pred ------------HHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-cH
Confidence 222333334555555555555554432 233334445555666666666666666666665433 21
Q ss_pred ccHHHHHHHHHhcCchhhHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Q 002549 710 DSINGLLQALIVDGRLNELYVVIQELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYHGMKAAGYFPTMYLYRVMSGLF 789 (909)
Q Consensus 710 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 789 (909)
..+..+...+...|++++|...+++..+.. |+...+..+..++.+.|++++|...+++..... +.+...++.+...+
T Consensus 577 ~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL 653 (987)
T PRK09782 577 ALYWWLHAQRYIPGQPELALNDLTRSLNIA--PSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYAL 653 (987)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 222222222333466666666666666544 234555666667777777777777777777643 22456677777778
Q ss_pred hccCchHHHHHHHHHHHHCCCCCCH-HhHHHHHHHhhccCCHHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCChhh
Q 002549 790 CKGKRVRDVEAMVSEMKEAGFKPDL-SIWNSMLKLYTGIEDFKKTIQVYQEIQEADLQPDE-DSFNTLIIMYCRDCRPEE 867 (909)
Q Consensus 790 ~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~ 867 (909)
...|++++|++.++++++ ..|+. ..+..++.++...|++++|+..++++++ +.|+. .+....++...+..+++.
T Consensus 654 ~~~G~~eeAi~~l~~AL~--l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~--l~P~~a~i~~~~g~~~~~~~~~~~ 729 (987)
T PRK09782 654 WDSGDIAQSREMLERAHK--GLPDDPALIRQLAYVNQRLDDMAATQHYARLVID--DIDNQALITPLTPEQNQQRFNFRR 729 (987)
T ss_pred HHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCCchhhhhhhHHHHHHHHHHH
Confidence 888888888888888876 34543 6677778888888888888888888888 77866 566677777777777788
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHhccCC
Q 002549 868 GLSLMHEMRKLGLEPKLDTYKSLISAFGKQQQ 899 (909)
Q Consensus 868 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 899 (909)
|.+-+++.. .+.|+..+.....+.+...|+
T Consensus 730 a~~~~~r~~--~~~~~~~a~~~~g~~~~~~~~ 759 (987)
T PRK09782 730 LHEEVGRRW--TFSFDSSIGLRSGAMSTANNN 759 (987)
T ss_pred HHHHHHHHh--hcCccchhccccchHhhhccc
Confidence 887777766 345554444444444444444
No 13
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.96 E-value=1.5e-22 Score=213.78 Aligned_cols=562 Identities=11% Similarity=0.101 Sum_probs=290.9
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 002549 202 LEEAMKVYGDLEAHNCQPDLWTYNAMISVYGRCGLFEKAEQLFKELESK--GFFPDAVTYNSLLYAFAREGNVEKVKEIS 279 (909)
Q Consensus 202 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 279 (909)
++.|...|....+.. ++|+..+-.-.......|++..|+.+|...... ...||+.. .+..++.+.|+.+.|...|
T Consensus 146 ~~~A~a~F~~Vl~~s-p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~~a~ 222 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQS-PDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKALLAF 222 (1018)
T ss_pred HHHHHHHHHHHHhhC-CcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhHHHHH
Confidence 466666666665554 444444444444444556666666666664433 22333221 2223444666666666666
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 002549 280 ENMLKMGFGKDEMTYNTIIHMYGKQ---GQHDVALQLYRDMKLSGRNPDVVTYTVLIDSLGKANKISEAANVMSEMLDAS 356 (909)
Q Consensus 280 ~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 356 (909)
....+.+. .++.++..|.-.-... ..+..+..++...-... +-+++..+.|...|...|+++.++.+...+....
T Consensus 223 ~ralqLdp-~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t 300 (1018)
T KOG2002|consen 223 ERALQLDP-TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNT 300 (1018)
T ss_pred HHHHhcCh-hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhh
Confidence 66665431 2222332222221111 22344444444443322 2345555666666666666666666666665432
Q ss_pred CC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCC-HHH
Q 002549 357 VK--PTLRTYSALICGYAKAGNRLEAEKTFYCMRRSGIRPDHLAYSVMLDIFLRFNETNKAMMLYQEMVSNGFTPD-QAL 433 (909)
Q Consensus 357 ~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~ 433 (909)
.. .-...|..+.++|...|++++|...|.+..+.....-+..+-.|...+.+.|+++.+...|+...+. .|| ..+
T Consensus 301 ~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~--~p~~~et 378 (1018)
T KOG2002|consen 301 ENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ--LPNNYET 378 (1018)
T ss_pred hhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHh--CcchHHH
Confidence 11 1123455566666666666666666655554321111233344556666666666666666666654 333 333
Q ss_pred HHHHHHHHhcCC----CHHHHHHHHHHHHHhcCCChHHH---HHHHHhcccHHHHHHHHHHHH----HcCCCCCHHHHHH
Q 002549 434 YEIMIGVLGREN----KGEEIRKVVRDMKELSGINMQEI---SSILVKGECYDHAAEILRSAI----RNGIELDHEKLLS 502 (909)
Q Consensus 434 ~~~ll~~~~~~g----~~~~a~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~----~~~~~~d~~~~~~ 502 (909)
...|...|...+ ..+.|..++.+..+..+.+.+.. +.++....-+.. +..|..+. ..+-.+.++.++.
T Consensus 379 m~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNN 457 (1018)
T KOG2002|consen 379 MKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNN 457 (1018)
T ss_pred HHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHh
Confidence 344444443332 33444444444444333333321 122222221111 33332222 2333345555555
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhc---CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhccCCcccchhhHHHHHHHHH
Q 002549 503 ILSSYNVSGRHLEACELIEFVKQH---ASESTPPLTQAFIIMLCKAQKLDAALEEYSNAWGFGFFSKSKTMYESLIHSCE 579 (909)
Q Consensus 503 l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~ 579 (909)
+...+...|.+..|...|..+... ....+.. -.++..+-..+..++.
T Consensus 458 vaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~------------------------------~~~~lt~~YNlarl~E 507 (1018)
T KOG2002|consen 458 VASLHFRLGNIEKALEHFKSALGKLLEVANKDEG------------------------------KSTNLTLKYNLARLLE 507 (1018)
T ss_pred HHHHHHHhcChHHHHHHHHHHhhhhhhhcCcccc------------------------------ccchhHHHHHHHHHHH
Confidence 555555666666665555555433 0000000 0111222344455555
Q ss_pred hcccHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCCchHHHHHHHHhhhcCChHHH
Q 002549 580 YNERFAEASQVFSDMRFYNIEPSED-LYRSMVVAYCKMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKA 658 (909)
Q Consensus 580 ~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 658 (909)
..++++.|.++|..+... .|.-. .|..++......++..+|...++.++. ++..++.++..+++.+.+...|..|
T Consensus 508 ~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~--~d~~np~arsl~G~~~l~k~~~~~a 583 (1018)
T KOG2002|consen 508 ELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALN--IDSSNPNARSLLGNLHLKKSEWKPA 583 (1018)
T ss_pred hhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHh--cccCCcHHHHHHHHHHHhhhhhccc
Confidence 556666666666666543 23322 233332222233455566666666655 4555666777777777777777777
Q ss_pred HHHHHHHHhcCC-CCChHhHHHHHHHHHHc------------CCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCch
Q 002549 659 ESLVGCLRQRCA-PVDRKVWNALIKAYAAS------------GCYERARAVFNTMMRDGPSPTVDSINGLLQALIVDGRL 725 (909)
Q Consensus 659 ~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~------------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 725 (909)
.+-|+.+.+.-. .+|+.+.-+|++.|.+. +.+++|+++|.++++.+|+ |..+-|.++.+++..|++
T Consensus 584 ~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpk-N~yAANGIgiVLA~kg~~ 662 (1018)
T KOG2002|consen 584 KKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPK-NMYAANGIGIVLAEKGRF 662 (1018)
T ss_pred ccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcc-hhhhccchhhhhhhccCc
Confidence 776666554322 23555555666655432 4566777777777777666 666777777777777777
Q ss_pred hhHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCchHHHHHHHHHHHhccCchHHHHHHHHH
Q 002549 726 NELYVVIQELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYHGMKAA-GYFPTMYLYRVMSGLFCKGKRVRDVEAMVSE 804 (909)
Q Consensus 726 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 804 (909)
.+|..+|.+..+... ....+|..+.++|...|.+..|+++|+...+. ....+..+...|..++.+.|++.+|.+.+..
T Consensus 663 ~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~ 741 (1018)
T KOG2002|consen 663 SEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLK 741 (1018)
T ss_pred hHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 777777777766543 22234444667777777777777777777653 3234566667777777777777777777766
Q ss_pred HHH
Q 002549 805 MKE 807 (909)
Q Consensus 805 ~~~ 807 (909)
+..
T Consensus 742 a~~ 744 (1018)
T KOG2002|consen 742 ARH 744 (1018)
T ss_pred HHH
Confidence 665
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.96 E-value=5.9e-26 Score=226.47 Aligned_cols=448 Identities=13% Similarity=0.092 Sum_probs=200.9
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCChHH---HHHHHHh
Q 002549 399 YSVMLDIFLRFNETNKAMMLYQEMVSNGFTPDQ-ALYEIMIGVLGRENKGEEIRKVVRDMKELSGINMQE---ISSILVK 474 (909)
Q Consensus 399 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~~~~ 474 (909)
...|..-..+.|++++|.+.-...-.. .|+. ...-.+-..+....+.+.....-....+..+.-.+. +.+++..
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~--d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQE--DPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhcc--CCCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHH
Confidence 344555556667777776654443322 1211 111112223444444444333333333323322222 3344445
Q ss_pred cccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 002549 475 GECYDHAAEILRSAIRNGIELDHEKLLSILSSYNVSGRHLEACELIEFVKQHASESTPPLTQAFIIMLCKAQKLDAALEE 554 (909)
Q Consensus 475 ~~~~~~a~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 554 (909)
.|+++.|+..|+.+++.. +.....|..+..++...|+.+.|.+.|..+++.+|.. ......+...+...|++++|...
T Consensus 129 rg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l-~ca~s~lgnLlka~Grl~ea~~c 206 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDL-YCARSDLGNLLKAEGRLEEAKAC 206 (966)
T ss_pred hchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcch-hhhhcchhHHHHhhcccchhHHH
Confidence 555555555555554431 1122334455555555555555555555555444331 11222333344445555555555
Q ss_pred HHHhhccCCcccchhhHHHHHHHHHhcccHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhhcCChhhHHHHHHHHHHcC
Q 002549 555 YSNAWGFGFFSKSKTMYESLIHSCEYNERFAEASQVFSDMRFYNIEPS-EDLYRSMVVAYCKMDFPETAHFIADQAEKKG 633 (909)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 633 (909)
|.++.+.. |.-..+|+.|...+..+|+.-.|+..|++..+ +.|+ ...|..+...|...+.+++|+..|.+++.
T Consensus 207 YlkAi~~q--p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk--ldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~-- 280 (966)
T KOG4626|consen 207 YLKAIETQ--PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK--LDPNFLDAYINLGNVYKEARIFDRAVSCYLRALN-- 280 (966)
T ss_pred HHHHHhhC--CceeeeehhcchHHhhcchHHHHHHHHHHhhc--CCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHh--
Confidence 55544433 34444455555555555555555555554443 2232 23344444444444445555544444443
Q ss_pred CCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHH
Q 002549 634 IPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSIN 713 (909)
Q Consensus 634 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 713 (909)
+.|+...++..++-.|.++|.++-|+..|+++++. .|.-+..|+.|+.++...|++.+|.+.+++++...+. ...+.+
T Consensus 281 lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~-~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~-hadam~ 358 (966)
T KOG4626|consen 281 LRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL-QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPN-HADAMN 358 (966)
T ss_pred cCCcchhhccceEEEEeccccHHHHHHHHHHHHhc-CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc-cHHHHH
Confidence 44444444444444455555555555555544443 2333444444555444445555555555554444333 334444
Q ss_pred HHHHHHHhcCchhhHHHHHHHHHhCCCCcc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCch-HHHHHHHHHHHhc
Q 002549 714 GLLQALIVDGRLNELYVVIQELQDMDFKIS-KSSILLMLDAFARSGNIFEVKKIYHGMKAAGYFPT-MYLYRVMSGLFCK 791 (909)
Q Consensus 714 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~ 791 (909)
.|..+|.+.|+.++|..+|....+.. |. ....+.|...|-++|++++|+..|++.++ +.|+ ...|+.+...|-.
T Consensus 359 NLgni~~E~~~~e~A~~ly~~al~v~--p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke 434 (966)
T KOG4626|consen 359 NLGNIYREQGKIEEATRLYLKALEVF--PEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKE 434 (966)
T ss_pred HHHHHHHHhccchHHHHHHHHHHhhC--hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHH
Confidence 44444445555555544444444322 11 22333444444444444444444444443 2333 2344444444444
Q ss_pred cCchHHHHHHHHHHHHCCCCCCH-HhHHHHHHHhhccCCHHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCChh
Q 002549 792 GKRVRDVEAMVSEMKEAGFKPDL-SIWNSMLKLYTGIEDFKKTIQVYQEIQEADLQPDE-DSFNTLIIMYCRDCRPE 866 (909)
Q Consensus 792 ~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~ 866 (909)
.|+.+.|++.+.+++. +.|.. ...+.|...|...|+..+|+..|+++++ ++||. .++.+++.++--..+|.
T Consensus 435 ~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDfpdA~cNllh~lq~vcdw~ 507 (966)
T KOG4626|consen 435 MGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDFPDAYCNLLHCLQIVCDWT 507 (966)
T ss_pred hhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCCchhhhHHHHHHHHHhccc
Confidence 4444444444444443 33332 3344444444444444444444444444 44443 44444444444333333
No 15
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.96 E-value=2.2e-22 Score=212.58 Aligned_cols=558 Identities=11% Similarity=0.067 Sum_probs=366.3
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 002549 307 HDVALQLYRDMKLSGRNPDVVTYTVLIDSLGKANKISEAANVMSEMLDAS--VKPTLRTYSALICGYAKAGNRLEAEKTF 384 (909)
Q Consensus 307 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 384 (909)
++.|...|....+.. ++++..+-.-.......|++..|+.+|....... ..||+. ..+..++.+.|+.+.|...|
T Consensus 146 ~~~A~a~F~~Vl~~s-p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~r--Igig~Cf~kl~~~~~a~~a~ 222 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQS-PDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVR--IGIGHCFWKLGMSEKALLAF 222 (1018)
T ss_pred HHHHHHHHHHHHhhC-CcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCcc--chhhhHHHhccchhhHHHHH
Confidence 466666666665543 2333222222222334566666666666654332 223322 22334445666666666666
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcC---CHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc
Q 002549 385 YCMRRSGIRPDHLAYSVMLDIFLRFN---ETNKAMMLYQEMVSNGFTPDQALYEIMIGVLGRENKGEEIRKVVRDMKELS 461 (909)
Q Consensus 385 ~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 461 (909)
....+... .++.++..|...-.... .+..+..++...-... .-|+...+.|.+.|.-.|+++.+..+...+....
T Consensus 223 ~ralqLdp-~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t 300 (1018)
T KOG2002|consen 223 ERALQLDP-TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNT 300 (1018)
T ss_pred HHHHhcCh-hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhh
Confidence 66665321 12223333322222222 2334444444443321 2345555666666666666666666666555533
Q ss_pred CCChHH------HHHHHHhcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhH
Q 002549 462 GINMQE------ISSILVKGECYDHAAEILRSAIRNGIELDHEKLLSILSSYNVSGRHLEACELIEFVKQHASESTPPLT 535 (909)
Q Consensus 462 ~~~~~~------~~~~~~~~~~~~~a~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 535 (909)
...+.. +...+-..|++++|...|....+.....-...+..+.+.+...|+.+.+...|+.+....|.. ..+.
T Consensus 301 ~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~-~etm 379 (1018)
T KOG2002|consen 301 ENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNN-YETM 379 (1018)
T ss_pred hhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcch-HHHH
Confidence 211111 234555667777777777766554333323446677888889999999999998888876653 4444
Q ss_pred HHHHHHHHhcC----CHHHHHHHHHHhhccCCcccchhhHHHHHHHHHhcccHHHHHHHHHHH----HhCCCCCCHHHHH
Q 002549 536 QAFIIMLCKAQ----KLDAALEEYSNAWGFGFFSKSKTMYESLIHSCEYNERFAEASQVFSDM----RFYNIEPSEDLYR 607 (909)
Q Consensus 536 ~~l~~~~~~~g----~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~~~~p~~~~~~ 607 (909)
..++..|...+ ..+.|..+..+..... |.+...|-.+...+.+..-+.. +..|... ...+..+.++..+
T Consensus 380 ~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~--~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LN 456 (1018)
T KOG2002|consen 380 KILGCLYAHSAKKQEKRDKASNVLGKVLEQT--PVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLN 456 (1018)
T ss_pred HHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc--cccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHH
Confidence 55566665554 5677888888877764 7788999988888877665555 6666543 3455567888899
Q ss_pred HHHHHHhhcCChhhHHHHHHHHHHc---CCCCCC-----chHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHH
Q 002549 608 SMVVAYCKMDFPETAHFIADQAEKK---GIPFED-----LSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNA 679 (909)
Q Consensus 608 ~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 679 (909)
.+...+...|+++.|...++.++.. ..+++. .+.-+.++.++-..++.+.|.++|..+++. .|.-...|--
T Consensus 457 Nvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke-hp~YId~ylR 535 (1018)
T KOG2002|consen 457 NVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE-HPGYIDAYLR 535 (1018)
T ss_pred hHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH-CchhHHHHHH
Confidence 9999999999999999999988865 122222 345778888999999999999999999887 4555666666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCchhhHHHHHHHHHhCC-CCccHHHHHHHHHHHHh--
Q 002549 680 LIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQALIVDGRLNELYVVIQELQDMD-FKISKSSILLMLDAFAR-- 756 (909)
Q Consensus 680 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~-- 756 (909)
++.+....++..+|...++.++..+.. ++..+..++..+.....+..|.+-|....+.. ..+|..+...|.+.|.+
T Consensus 536 l~~ma~~k~~~~ea~~~lk~~l~~d~~-np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l 614 (1018)
T KOG2002|consen 536 LGCMARDKNNLYEASLLLKDALNIDSS-NPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQAL 614 (1018)
T ss_pred hhHHHHhccCcHHHHHHHHHHHhcccC-CcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHh
Confidence 664555568899999999999887654 66677778888888888888888777665543 33677777778886653
Q ss_pred ----------cCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccCchHHHHHHHHHHHHCCCCCCHHhHHHHHHHhhc
Q 002549 757 ----------SGNIFEVKKIYHGMKAAGYFPTMYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDLSIWNSMLKLYTG 826 (909)
Q Consensus 757 ----------~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 826 (909)
.+..++|+++|.++++.. +-|...-|-++-.++..|++++|..+|.+..+.. .-+..+|..++.+|..
T Consensus 615 ~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e 692 (1018)
T KOG2002|consen 615 HNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVE 692 (1018)
T ss_pred cccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHH
Confidence 234667788888777643 3367777778888888888888888888887742 2244678888888888
Q ss_pred cCCHHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCChhhHHHHHHHHHH
Q 002549 827 IEDFKKTIQVYQEIQEADLQP-DEDSFNTLIIMYCRDCRPEEGLSLMHEMRK 877 (909)
Q Consensus 827 ~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 877 (909)
+|++..|+++|+..+++-..- ++.....|+.++.+.|++.+|.+.+.....
T Consensus 693 ~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~ 744 (1018)
T KOG2002|consen 693 QGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARH 744 (1018)
T ss_pred HHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 888888888888887754322 457777888888888888888888877764
No 16
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.96 E-value=2.3e-25 Score=222.28 Aligned_cols=444 Identities=13% Similarity=0.092 Sum_probs=356.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 002549 329 YTVLIDSLGKANKISEAANVMSEMLDASVKPTLRTYSALICGYAKAGNRLEAEKTFYCMRRSGIRPDHLAYSVMLDIFLR 408 (909)
Q Consensus 329 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 408 (909)
...|..-..+.|++++|++.....-..+ ..+....-.+-..+.+..++++...--....+. .+.-..+|..+.+.+-.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~-~~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRK-NPQGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhc-cchHHHHHHHHHHHHHH
Confidence 4556667778888888888766554443 122223333344556666666555443333332 12346778888888888
Q ss_pred cCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHhcccHHHHHHHHHH
Q 002549 409 FNETNKAMMLYQEMVSNGFTP-DQALYEIMIGVLGRENKGEEIRKVVRDMKELSGINMQEISSILVKGECYDHAAEILRS 487 (909)
Q Consensus 409 ~~~~~~A~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 487 (909)
.|++++|+.+++.+++. .| ....|..+..++...|+.+.|...+....+
T Consensus 129 rg~~~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alq---------------------------- 178 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQ---------------------------- 178 (966)
T ss_pred hchHHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh----------------------------
Confidence 88888888888888865 44 356677777777777777777766655544
Q ss_pred HHHcCCCCCHHHH-HHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhccCCccc
Q 002549 488 AIRNGIELDHEKL-LSILSSYNVSGRHLEACELIEFVKQHASESTPPLTQAFIIMLCKAQKLDAALEEYSNAWGFGFFSK 566 (909)
Q Consensus 488 ~~~~~~~~d~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 566 (909)
+.|+.... +.+.......|+..+|...+-.+++..+.. ...+..|...+...|++..|++.|+++.+.+ |.
T Consensus 179 -----lnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~f-AiawsnLg~~f~~~Gei~~aiq~y~eAvkld--P~ 250 (966)
T KOG4626|consen 179 -----LNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCF-AIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD--PN 250 (966)
T ss_pred -----cCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCce-eeeehhcchHHhhcchHHHHHHHHHHhhcCC--Cc
Confidence 46666654 445566777899999999999988877643 4567889999999999999999999999987 77
Q ss_pred chhhHHHHHHHHHhcccHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCCchHHHHH
Q 002549 567 SKTMYESLIHSCEYNERFAEASQVFSDMRFYNIEPS-EDLYRSMVVAYCKMDFPETAHFIADQAEKKGIPFEDLSIYVDI 645 (909)
Q Consensus 567 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 645 (909)
-..+|..|...|...+.+++|+..|.+... ..|+ ...+..+...|-..|..|-|+..|+++++ ++|.-+.+++.+
T Consensus 251 f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~--lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~--~~P~F~~Ay~Nl 326 (966)
T KOG4626|consen 251 FLDAYINLGNVYKEARIFDRAVSCYLRALN--LRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALE--LQPNFPDAYNNL 326 (966)
T ss_pred chHHHhhHHHHHHHHhcchHHHHHHHHHHh--cCCcchhhccceEEEEeccccHHHHHHHHHHHHh--cCCCchHHHhHH
Confidence 888999999999999999999999988765 4665 45677788888999999999999999998 899999999999
Q ss_pred HHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCch
Q 002549 646 IDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQALIVDGRL 725 (909)
Q Consensus 646 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 725 (909)
++++-..|+..+|...|.+++.. .+......+.|+..|..+|+++.|..+|.++++..|. -....+.|...|-++|++
T Consensus 327 anALkd~G~V~ea~~cYnkaL~l-~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~-~aaa~nNLa~i~kqqgnl 404 (966)
T KOG4626|consen 327 ANALKDKGSVTEAVDCYNKALRL-CPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPE-FAAAHNNLASIYKQQGNL 404 (966)
T ss_pred HHHHHhccchHHHHHHHHHHHHh-CCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChh-hhhhhhhHHHHHHhcccH
Confidence 99999999999999999999987 5667889999999999999999999999999997665 456789999999999999
Q ss_pred hhHHHHHHHHHhCCCCcc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCch-HHHHHHHHHHHhccCchHHHHHHHH
Q 002549 726 NELYVVIQELQDMDFKIS-KSSILLMLDAFARSGNIFEVKKIYHGMKAAGYFPT-MYLYRVMSGLFCKGKRVRDVEAMVS 803 (909)
Q Consensus 726 ~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~ 803 (909)
++|+..+++.... +|. ...++.+...|...|+.+.|.+.+.+.+. +.|+ .+..+.|...|-..|+..+|++-++
T Consensus 405 ~~Ai~~YkealrI--~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~ 480 (966)
T KOG4626|consen 405 DDAIMCYKEALRI--KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYR 480 (966)
T ss_pred HHHHHHHHHHHhc--CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHH
Confidence 9999999998864 455 46788899999999999999999999998 4575 4688999999999999999999999
Q ss_pred HHHHCCCCCCH-HhHHHHHHHh
Q 002549 804 EMKEAGFKPDL-SIWNSMLKLY 824 (909)
Q Consensus 804 ~~~~~~~~p~~-~~~~~l~~~~ 824 (909)
+.++ ++||. ..+-.++.++
T Consensus 481 ~aLk--lkPDfpdA~cNllh~l 500 (966)
T KOG4626|consen 481 TALK--LKPDFPDAYCNLLHCL 500 (966)
T ss_pred HHHc--cCCCCchhhhHHHHHH
Confidence 9998 78987 4555555543
No 17
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.91 E-value=2e-20 Score=211.39 Aligned_cols=396 Identities=12% Similarity=0.021 Sum_probs=277.0
Q ss_pred HHHHHHhcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 002549 468 ISSILVKGECYDHAAEILRSAIRNGIELDHEKLLSILSSYNVSGRHLEACELIEFVKQHASESTPPLTQAFIIMLCKAQK 547 (909)
Q Consensus 468 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 547 (909)
....+...|++++|+..|++++.. .|++..+..+..+|...|++++|+..++.+++..|. ....+..+...|...|+
T Consensus 133 ~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~a~a~~~lg~ 209 (615)
T TIGR00990 133 KGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPD-YSKALNRRANAYDGLGK 209 (615)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHcCC
Confidence 346778889999999999998764 567778888889999999999999999999988765 35567778888999999
Q ss_pred HHHHHHHHHHhhccCCcccchhhHHHHHHHHHhcccHHHHHHHHHHHHhCCCCCCHHHH---------------------
Q 002549 548 LDAALEEYSNAWGFGFFSKSKTMYESLIHSCEYNERFAEASQVFSDMRFYNIEPSEDLY--------------------- 606 (909)
Q Consensus 548 ~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~--------------------- 606 (909)
+++|+..|..+...+ +.+......++..+........+...++.-.. ..|.....
T Consensus 210 ~~eA~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (615)
T TIGR00990 210 YADALLDLTASCIID--GFRNEQSAQAVERLLKKFAESKAKEILETKPE--NLPSVTFVGNYLQSFRPKPRPAGLEDSNE 285 (615)
T ss_pred HHHHHHHHHHHHHhC--CCccHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CCCCHHHHHHHHHHccCCcchhhhhcccc
Confidence 999999887776543 11211112222211111111111111111000 00000000
Q ss_pred ---------HHHHHH---HhhcCChhhHHHHHHHHHHcC-CCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCC
Q 002549 607 ---------RSMVVA---YCKMDFPETAHFIADQAEKKG-IPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVD 673 (909)
Q Consensus 607 ---------~~l~~~---~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 673 (909)
..+... ....+.+++|...++.++..+ ..|....++..++..+...|++++|+..++++++. .|.+
T Consensus 286 ~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l-~P~~ 364 (615)
T TIGR00990 286 LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL-DPRV 364 (615)
T ss_pred cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCc
Confidence 000000 112356788888888888753 45667778888888888888888888888888876 4555
Q ss_pred hHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCchhhHHHHHHHHHhCCCCccHHHHHHHHHH
Q 002549 674 RKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQALIVDGRLNELYVVIQELQDMDFKISKSSILLMLDA 753 (909)
Q Consensus 674 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 753 (909)
...|..++.++...|++++|...|+++++..|. +...|..++..+...|++++|+..|++..+.. +.+...+..+..+
T Consensus 365 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~ 442 (615)
T TIGR00990 365 TQSYIKRASMNLELGDPDKAEEDFDKALKLNSE-DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVT 442 (615)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHH
Confidence 677888888888888888888888888887665 66778888888888888888888888888765 2334556667788
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccCchHHHHHHHHHHHHCCCCCCH-Hh-------HHHHHHHhh
Q 002549 754 FARSGNIFEVKKIYHGMKAAGYFPTMYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDL-SI-------WNSMLKLYT 825 (909)
Q Consensus 754 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~-------~~~l~~~~~ 825 (909)
+.+.|++++|+..|++.++.. +.+...++.++..+...|++++|++.|+++++ +.|+. .+ ++..+..+.
T Consensus 443 ~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~--l~p~~~~~~~~~~~l~~~a~~~~~ 519 (615)
T TIGR00990 443 QYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIE--LEKETKPMYMNVLPLINKALALFQ 519 (615)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCccccccccHHHHHHHHHHHHH
Confidence 888888888888888887642 23467788888888888888888888888876 33432 11 111222233
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 002549 826 GIEDFKKTIQVYQEIQEADLQPDE-DSFNTLIIMYCRDCRPEEGLSLMHEMRKL 878 (909)
Q Consensus 826 ~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 878 (909)
..|++++|+++++++++ +.|+. .++..++.++.+.|++++|+++|++..+.
T Consensus 520 ~~~~~~eA~~~~~kAl~--l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 520 WKQDFIEAENLCEKALI--IDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HhhhHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 45888888888888888 67865 56778888888888888888888888753
No 18
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.90 E-value=5.9e-19 Score=199.48 Aligned_cols=434 Identities=11% Similarity=0.015 Sum_probs=268.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCC-CHHHHHHHHHH
Q 002549 362 RTYSALICGYAKAGNRLEAEKTFYCMRRSGIRPDHLAYSVMLDIFLRFNETNKAMMLYQEMVSNGFTP-DQALYEIMIGV 440 (909)
Q Consensus 362 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~ll~~ 440 (909)
..+......+.+.|++++|...|++..+. .|+...|..+..+|.+.|++++|+..++..++. .| +...+..+..+
T Consensus 128 ~~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l--~p~~~~a~~~~a~a 203 (615)
T TIGR00990 128 AKLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALEL--DPDYSKALNRRANA 203 (615)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHH
Confidence 34556777888999999999999998874 577888888999999999999999999998875 44 45678888889
Q ss_pred HhcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHhcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 002549 441 LGRENKGEEIRKVVRDMKELSGINMQEISSILVKGECYDHAAEILRSAIRNGIELDHEKLLSILSSYNVSGRHLEACELI 520 (909)
Q Consensus 441 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~a~~~~ 520 (909)
|...|++++|...+..+....+.........+.+. ....+.......++.... +...+..+.. +......
T Consensus 204 ~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~a~~~~~~~l~~~~~-~~~~~~~~~~-~~~~~~~------- 273 (615)
T TIGR00990 204 YDGLGKYADALLDLTASCIIDGFRNEQSAQAVERL-LKKFAESKAKEILETKPE-NLPSVTFVGN-YLQSFRP------- 273 (615)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHH-HHHHHHHHHHHHHhcCCC-CCCCHHHHHH-HHHHccC-------
Confidence 99999999998887766554443333222111110 011122222222211110 0001111111 1000000
Q ss_pred HHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhccCCcccchhhHHHHHHHH---HhcccHHHHHHHHHHHHhC
Q 002549 521 EFVKQHASESTPPLTQAFIIMLCKAQKLDAALEEYSNAWGFGFFSKSKTMYESLIHSC---EYNERFAEASQVFSDMRFY 597 (909)
Q Consensus 521 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~---~~~g~~~~A~~~~~~m~~~ 597 (909)
..+..-+....+.. +.....+..+.... ...+++++|+..|+...+.
T Consensus 274 ----------------------------~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~ 323 (615)
T TIGR00990 274 ----------------------------KPRPAGLEDSNELD--EETGNGQLQLGLKSPESKADESYEEAARAFEKALDL 323 (615)
T ss_pred ----------------------------Ccchhhhhcccccc--cccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhc
Confidence 00000011000000 00011111111111 1235666666666666654
Q ss_pred C-CCC-CHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChH
Q 002549 598 N-IEP-SEDLYRSMVVAYCKMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRK 675 (909)
Q Consensus 598 ~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 675 (909)
+ ..| ....+..+...+...|++++|+..+++++. +.|+....+..++.++...|++++|+..|+++++. .|.++.
T Consensus 324 ~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~--l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-~p~~~~ 400 (615)
T TIGR00990 324 GKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIE--LDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKL-NSEDPD 400 (615)
T ss_pred CCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHH
Confidence 3 123 233455555566667777777777777766 56666777777777777777777777777777665 455677
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCchhhHHHHHHHHHhCCCCccHHHHHHHHHHHH
Q 002549 676 VWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQALIVDGRLNELYVVIQELQDMDFKISKSSILLMLDAFA 755 (909)
Q Consensus 676 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 755 (909)
+|..++.++...|++++|...|+++++..|. +...+..++.++.+.|++++|+..+++..+.. +.+...+..+..++.
T Consensus 401 ~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~ 478 (615)
T TIGR00990 401 IYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLL 478 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence 7777777777777777777777777776655 55666677777777777777777777776543 334556666777777
Q ss_pred hcCCHHHHHHHHHHHHhcCCC--c---hH-HHHHHHHHHHhccCchHHHHHHHHHHHHCCCCCCH-HhHHHHHHHhhccC
Q 002549 756 RSGNIFEVKKIYHGMKAAGYF--P---TM-YLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDL-SIWNSMLKLYTGIE 828 (909)
Q Consensus 756 ~~g~~~~a~~~~~~~~~~~~~--p---~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g 828 (909)
..|++++|++.|++....... + +. ..++.....+...|++++|+++++++++ ..|+. ..+..++.++...|
T Consensus 479 ~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~--l~p~~~~a~~~la~~~~~~g 556 (615)
T TIGR00990 479 DQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALI--IDPECDIAVATMAQLLLQQG 556 (615)
T ss_pred HccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcc
Confidence 888888888888887763211 1 11 1122223334456899999999999887 34655 57888899999999
Q ss_pred CHHHHHHHHHHHHHcCCCCC
Q 002549 829 DFKKTIQVYQEIQEADLQPD 848 (909)
Q Consensus 829 ~~~~A~~~~~~~~~~~~~p~ 848 (909)
++++|++.|+++++ +.+.
T Consensus 557 ~~~eAi~~~e~A~~--l~~~ 574 (615)
T TIGR00990 557 DVDEALKLFERAAE--LART 574 (615)
T ss_pred CHHHHHHHHHHHHH--Hhcc
Confidence 99999999999988 5554
No 19
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.89 E-value=8.4e-17 Score=169.90 Aligned_cols=668 Identities=13% Similarity=0.087 Sum_probs=387.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 002549 190 NTIISACSRESNLEEAMKVYGDLEAHNCQPDLWTYNAMISVYGRCGLFEKAEQLFKELESKGFFPDAVTYNSLLYAFARE 269 (909)
Q Consensus 190 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 269 (909)
-...+.....|++++|.+++.++++.. +.+...|.+|...|-..|+.+++...+-..-..+.. |...|..+.....+.
T Consensus 143 l~eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~-d~e~W~~ladls~~~ 220 (895)
T KOG2076|consen 143 LGEANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK-DYELWKRLADLSEQL 220 (895)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHhc
Confidence 333444445599999999999999886 677889999999999999999999888666555433 678899999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHH----HHHHHHHhcCCHHHH
Q 002549 270 GNVEKVKEISENMLKMGFGKDEMTYNTIIHMYGKQGQHDVALQLYRDMKLSGRNPDVVTYT----VLIDSLGKANKISEA 345 (909)
Q Consensus 270 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~----~li~~~~~~g~~~~A 345 (909)
|+++.|.-.+.+.++.. +++...+---+..|-+.|+...|.+.|.++.....+.|..-.. ..+..+...++-+.|
T Consensus 221 ~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a 299 (895)
T KOG2076|consen 221 GNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERA 299 (895)
T ss_pred ccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 99999999999999886 4565555566778999999999999999999875322322222 234556667777889
Q ss_pred HHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHH--
Q 002549 346 ANVMSEMLDA-SVKPTLRTYSALICGYAKAGNRLEAEKTFYCMRRSGIRPDHLAYSVMLDIFLRFNETNKAMMLYQEM-- 422 (909)
Q Consensus 346 ~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-- 422 (909)
.+.++..... +-..+...++.++..+.+...++.|......+......+|..-+.+- ..++. -+.-.
T Consensus 300 ~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~-----~~~~~-----~~~~~~~ 369 (895)
T KOG2076|consen 300 AKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTD-----ERRRE-----EPNALCE 369 (895)
T ss_pred HHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhh-----hhccc-----ccccccc
Confidence 9888888762 22345567778888888888888888888777764444544333210 00000 00000
Q ss_pred HHCCCCCCHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHhcccHHHHHHHHHHHHHcCCCCCHHHHH
Q 002549 423 VSNGFTPDQALYEIMIGVL-GRENKGEEIRKVVRDMKELSGINMQEISSILVKGECYDHAAEILRSAIRNGIELDHEKLL 501 (909)
Q Consensus 423 ~~~~~~~~~~~~~~ll~~~-~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~d~~~~~ 501 (909)
...++.++...+..++... .+.+...+++..+ ..+ .... +.-+...+.
T Consensus 370 ~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~--l~~-~n~~----------------------------~~d~~dL~~ 418 (895)
T KOG2076|consen 370 VGKELSYDLRVIRLMICLVHLKERELLEALLHF--LVE-DNVW----------------------------VSDDVDLYL 418 (895)
T ss_pred CCCCCCccchhHhHhhhhhcccccchHHHHHHH--HHH-hcCC----------------------------hhhhHHHHH
Confidence 0112344444422222111 1222222222111 111 1100 111223344
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhccCCcccchhhHHHHHHHHHhc
Q 002549 502 SILSSYNVSGRHLEACELIEFVKQHASESTPPLTQAFIIMLCKAQKLDAALEEYSNAWGFGFFSKSKTMYESLIHSCEYN 581 (909)
Q Consensus 502 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 581 (909)
.+..++.+.|++.+|..++..+..........+|..++.+|...|.++.|++.|..++... |.+....-+|...+.+.
T Consensus 419 d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~--p~~~D~Ri~Lasl~~~~ 496 (895)
T KOG2076|consen 419 DLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILA--PDNLDARITLASLYQQL 496 (895)
T ss_pred HHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCchhhhhhHHHHHHhc
Confidence 4555555555555555555555555555455555555555555555555555555555544 44555555555555555
Q ss_pred ccHHHHHHHHHHHHh--------CCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHc---------------------
Q 002549 582 ERFAEASQVFSDMRF--------YNIEPSEDLYRSMVVAYCKMDFPETAHFIADQAEKK--------------------- 632 (909)
Q Consensus 582 g~~~~A~~~~~~m~~--------~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------------------- 632 (909)
|+.++|++.+..+.. .+..|+..........+.+.|+.++=+.+...++..
T Consensus 497 g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~ 576 (895)
T KOG2076|consen 497 GNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAG 576 (895)
T ss_pred CCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhcc
Confidence 555555555555331 112333333334444445555544322222222110
Q ss_pred CCCCCCchHHHHHHHHhhhcCChHHHHHHHHHH------HhcCCCCCh--HhHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 002549 633 GIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCL------RQRCAPVDR--KVWNALIKAYAASGCYERARAVFNTMMRDG 704 (909)
Q Consensus 633 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~------~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 704 (909)
+-.+-.......++.+-.+.+++.....-...- ...+...+. ..+.-++.++.+.+.+++|..+...++...
T Consensus 577 ~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~ 656 (895)
T KOG2076|consen 577 TTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAY 656 (895)
T ss_pred ccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhh
Confidence 001122233333444444444333222222111 111111111 234456778888899999999998887753
Q ss_pred CCC-Ccc---cH-HHHHHHHHhcCchhhHHHHHHHHHhC-CC--CccH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 002549 705 PSP-TVD---SI-NGLLQALIVDGRLNELYVVIQELQDM-DF--KISK-SSILLMLDAFARSGNIFEVKKIYHGMKAAGY 775 (909)
Q Consensus 705 ~~~-~~~---~~-~~l~~~~~~~g~~~~A~~~~~~~~~~-~~--~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 775 (909)
..- +.. .+ ...+.+....+++.+|...+..|... +. .|.. ..|+...+...+.|+----.+++..+.....
T Consensus 657 ~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~ 736 (895)
T KOG2076|consen 657 IFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNK 736 (895)
T ss_pred hhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence 221 111 22 23345566888999999988888755 11 2222 2333344444444433322333333332211
Q ss_pred CchHHHHHHHHHHHhccCchHHHHHHHHHHHHCCCCCCHHhHHHHHHH-hh----------ccCCHHHHHHHHHHHHHcC
Q 002549 776 FPTMYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDLSIWNSMLKL-YT----------GIEDFKKTIQVYQEIQEAD 844 (909)
Q Consensus 776 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~-~~----------~~g~~~~A~~~~~~~~~~~ 844 (909)
.-++..+...+..+..++.+..|+..+-.+.. ..||....+.+++. +. ++-..-+++.+.++-.+
T Consensus 737 ~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~--~~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~-- 812 (895)
T KOG2076|consen 737 DDTPPLALIYGHNLFVNASFKHALQEYMRAFR--QNPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKE-- 812 (895)
T ss_pred cCCcceeeeechhHhhccchHHHHHHHHHHHH--hCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH--
Confidence 11233333334556678889999998877776 46886655554432 21 11235667777777766
Q ss_pred CCC--C-hhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChh-------------hHHHHHHHHhccCCHHHHHHhhc
Q 002549 845 LQP--D-EDSFNTLIIMYCRDCRPEEGLSLMHEMRKLGLEPKLD-------------TYKSLISAFGKQQQLEQAEELLK 908 (909)
Q Consensus 845 ~~p--~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-------------~~~~l~~~~~~~g~~~~A~~~~~ 908 (909)
+.- + -.++.+++.+|-..|-..-|..+|++... ..|-++ .-..|.-+|..+|+.+.|..+++
T Consensus 813 lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~--~~p~~~~~~~~d~~dLrkeAA~NL~LIY~~SGn~~lArqil~ 890 (895)
T KOG2076|consen 813 LRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLE--VSPKDVTDPKEDNYDLRKEAAYNLHLIYKKSGNMQLARQILE 890 (895)
T ss_pred hhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhC--CCccccccccCCcccHHHHHHhhhhhhhccCCcHHHHHHHHH
Confidence 333 2 38899999999999999999999999994 432211 23356667999999999999986
Q ss_pred C
Q 002549 909 S 909 (909)
Q Consensus 909 ~ 909 (909)
+
T Consensus 891 k 891 (895)
T KOG2076|consen 891 K 891 (895)
T ss_pred h
Confidence 4
No 20
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.89 E-value=1.8e-20 Score=201.62 Aligned_cols=304 Identities=13% Similarity=0.102 Sum_probs=190.1
Q ss_pred HHHhcCCHHHHHHHHHHhhccCCcccchhhHHHHHHHHHhcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChh
Q 002549 541 MLCKAQKLDAALEEYSNAWGFGFFSKSKTMYESLIHSCEYNERFAEASQVFSDMRFYNIEPSEDLYRSMVVAYCKMDFPE 620 (909)
Q Consensus 541 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~ 620 (909)
.+...|++++|+..|+++.+.+ |.+..++..+...+...|++++|..+++.+...+..++..
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~---------------- 105 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVD--PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQ---------------- 105 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHH----------------
Confidence 3445666777777777776654 5566667777777777777777777777665432111110
Q ss_pred hHHHHHHHHHHcCCCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHH
Q 002549 621 TAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTM 700 (909)
Q Consensus 621 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 700 (909)
...++..++..|...|++++|..+|+++.+. .+.+..+++.++.++...|++++|.+.++++
T Consensus 106 -----------------~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 167 (389)
T PRK11788 106 -----------------RLLALQELGQDYLKAGLLDRAEELFLQLVDE-GDFAEGALQQLLEIYQQEKDWQKAIDVAERL 167 (389)
T ss_pred -----------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHHhchHHHHHHHHHHH
Confidence 0123344555555555555565555555543 3344556666666666666666666666666
Q ss_pred HHcCCCCCc----ccHHHHHHHHHhcCchhhHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 002549 701 MRDGPSPTV----DSINGLLQALIVDGRLNELYVVIQELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYHGMKAAGYF 776 (909)
Q Consensus 701 ~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 776 (909)
.+.++.+.. ..+..++..+.+.|++++|...++++.+.. +.+...+..++..+.+.|++++|.++++++.+.+..
T Consensus 168 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 246 (389)
T PRK11788 168 EKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPE 246 (389)
T ss_pred HHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChh
Confidence 665443221 123445555666666666666666666543 222344555666777777777777777777664322
Q ss_pred chHHHHHHHHHHHhccCchHHHHHHHHHHHHCCCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHcCCCCChhhHHHHH
Q 002549 777 PTMYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDLSIWNSMLKLYTGIEDFKKTIQVYQEIQEADLQPDEDSFNTLI 856 (909)
Q Consensus 777 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 856 (909)
....+++.++.+|.+.|++++|.+.++++.+ ..|+...+..++..+.+.|++++|+.+++++++ ..|+..++..+.
T Consensus 247 ~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~--~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~--~~P~~~~~~~l~ 322 (389)
T PRK11788 247 YLSEVLPKLMECYQALGDEAEGLEFLRRALE--EYPGADLLLALAQLLEEQEGPEAAQALLREQLR--RHPSLRGFHRLL 322 (389)
T ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCcCHHHHHHHH
Confidence 2245567777777778888888888877776 356666667777777778888888888888777 677777777666
Q ss_pred HHHHh---cCChhhHHHHHHHHHHcCCCCChh
Q 002549 857 IMYCR---DCRPEEGLSLMHEMRKLGLEPKLD 885 (909)
Q Consensus 857 ~~~~~---~g~~~~A~~~~~~~~~~~~~p~~~ 885 (909)
..+.. .|+.++|+.++++|.+.++.|+++
T Consensus 323 ~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 323 DYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 65553 457778888888887766666665
No 21
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.89 E-value=3.8e-20 Score=199.02 Aligned_cols=285 Identities=14% Similarity=0.166 Sum_probs=231.6
Q ss_pred hhcCChhhHHHHHHHHHHcCCCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCC---hHhHHHHHHHHHHcCCH
Q 002549 614 CKMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVD---RKVWNALIKAYAASGCY 690 (909)
Q Consensus 614 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~ 690 (909)
...|++++|...+.++++ ..|++..++..++..+...|++++|..+++.+...+..++ ...+..++..|...|++
T Consensus 46 ~~~~~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 46 LLNEQPDKAIDLFIEMLK--VDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HhcCChHHHHHHHHHHHh--cCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 344555556666665555 4566677777788888888888888888888776422111 35678899999999999
Q ss_pred HHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCchhhHHHHHHHHHhCCCCccH----HHHHHHHHHHHhcCCHHHHHHH
Q 002549 691 ERARAVFNTMMRDGPSPTVDSINGLLQALIVDGRLNELYVVIQELQDMDFKISK----SSILLMLDAFARSGNIFEVKKI 766 (909)
Q Consensus 691 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~ 766 (909)
++|..+|+++.+..+. +..++..++..+.+.|++++|.+.++.+.+.+..+.. ..+..++..+.+.|++++|...
T Consensus 124 ~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 202 (389)
T PRK11788 124 DRAEELFLQLVDEGDF-AEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARAL 202 (389)
T ss_pred HHHHHHHHHHHcCCcc-hHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 9999999999987554 6778999999999999999999999999887644332 2345677888999999999999
Q ss_pred HHHHHhcCCCchHHHHHHHHHHHhccCchHHHHHHHHHHHHCCCCCCH--HhHHHHHHHhhccCCHHHHHHHHHHHHHcC
Q 002549 767 YHGMKAAGYFPTMYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDL--SIWNSMLKLYTGIEDFKKTIQVYQEIQEAD 844 (909)
Q Consensus 767 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 844 (909)
|+++.+.. +.+...+..++..|.+.|++++|+++++++.+. .|+. .++..++.+|...|+.++|.+.++++.+
T Consensus 203 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~-- 277 (389)
T PRK11788 203 LKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQ--DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE-- 277 (389)
T ss_pred HHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--
Confidence 99998753 234567888999999999999999999999874 4543 5678899999999999999999999999
Q ss_pred CCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHhc---cCCHHHHHHhhc
Q 002549 845 LQPDEDSFNTLIIMYCRDCRPEEGLSLMHEMRKLGLEPKLDTYKSLISAFGK---QQQLEQAEELLK 908 (909)
Q Consensus 845 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~ 908 (909)
..|+...+..++..+.+.|++++|..+++++.+. .|+...+..++..+.. .|+.++|..+++
T Consensus 278 ~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~ 342 (389)
T PRK11788 278 EYPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLR 342 (389)
T ss_pred hCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHH
Confidence 7898877789999999999999999999999854 7898888888887764 568888887765
No 22
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.88 E-value=3.1e-19 Score=200.26 Aligned_cols=363 Identities=10% Similarity=0.016 Sum_probs=218.9
Q ss_pred HHHhcccHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCH
Q 002549 471 ILVKGECYDHAAEILRSAIRNG--IELDHEKLLSILSSYNVSGRHLEACELIEFVKQHASESTPPLTQAFIIMLCKAQKL 548 (909)
Q Consensus 471 ~~~~~~~~~~a~~~~~~~~~~~--~~~d~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 548 (909)
.+.++.+|+.-.-.+....+.. -.-+...+..++..+.+.|+.++|..++..++...+..... ...++......|++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~-l~~l~~~~l~~g~~ 92 (656)
T PRK15174 14 TLLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDL-LRRWVISPLASSQP 92 (656)
T ss_pred hhhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhH-HHHHhhhHhhcCCH
Confidence 4455666655444443332211 11122235555666677777777777777777766665333 33344555557777
Q ss_pred HHHHHHHHHhhccCCcccchhhHHHHHHHHHhcccHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcCChhhHHHHHH
Q 002549 549 DAALEEYSNAWGFGFFSKSKTMYESLIHSCEYNERFAEASQVFSDMRFYNIEP-SEDLYRSMVVAYCKMDFPETAHFIAD 627 (909)
Q Consensus 549 ~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~ 627 (909)
++|++.|+++.... |.+...+..+...+...|++++|+..+++.... .| +...+..+...+...|++++|...++
T Consensus 93 ~~A~~~l~~~l~~~--P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~ 168 (656)
T PRK15174 93 DAVLQVVNKLLAVN--VCQPEDVLLVASVLLKSKQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLAR 168 (656)
T ss_pred HHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 77777777777665 666667777777777777777777777776653 33 34455566666677777777777766
Q ss_pred HHHHcCCCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 002549 628 QAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSP 707 (909)
Q Consensus 628 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 707 (909)
.+.. ..|++...+..++ .+...|++++|...++.+++....++...+..++.++...|++++|...++++++..|.
T Consensus 169 ~~~~--~~P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~- 244 (656)
T PRK15174 169 TQAQ--EVPPRGDMIATCL-SFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD- 244 (656)
T ss_pred HHHH--hCCCCHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-
Confidence 6655 4455555554433 35666777777777776665422233333444456666677777777777777766554
Q ss_pred CcccHHHHHHHHHhcCchhh----HHHHHHHHHhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHH
Q 002549 708 TVDSINGLLQALIVDGRLNE----LYVVIQELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYHGMKAAGYFPTMYLYR 783 (909)
Q Consensus 708 ~~~~~~~l~~~~~~~g~~~~----A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~ 783 (909)
+...+..+...+...|++++ |...+++..+.. +.+...+..+..++...|++++|...+++..+.. +.+...+.
T Consensus 245 ~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~ 322 (656)
T PRK15174 245 GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRA 322 (656)
T ss_pred CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 45556666666777777664 566666666554 2234555666666777777777777777766532 12344555
Q ss_pred HHHHHHhccCchHHHHHHHHHHHHCCCCCCHHh-HHHHHHHhhccCCHHHHHHHHHHHHHcCCCCC
Q 002549 784 VMSGLFCKGKRVRDVEAMVSEMKEAGFKPDLSI-WNSMLKLYTGIEDFKKTIQVYQEIQEADLQPD 848 (909)
Q Consensus 784 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 848 (909)
.++..|.+.|++++|++.++++.+ ..|+... +..++.++...|+.++|+..|+++++ ..|+
T Consensus 323 ~La~~l~~~G~~~eA~~~l~~al~--~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~--~~P~ 384 (656)
T PRK15174 323 MYARALRQVGQYTAASDEFVQLAR--EKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQ--ARAS 384 (656)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH--hCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hChh
Confidence 666666677777777777776665 2454433 33345556666777777777777766 5554
No 23
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.88 E-value=2.6e-15 Score=152.18 Aligned_cols=611 Identities=12% Similarity=0.060 Sum_probs=434.0
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 002549 200 SNLEEAMKVYGDLEAHNCQPDLWTYNAMISVYGRCGLFEKAEQLFKELESKGFFPDAVTYNSLLYAFAREGNVEKVKEIS 279 (909)
Q Consensus 200 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 279 (909)
+|...|..++....+.+ +.++..|-.-.+.--..|++..|..+..+=-+. ++-+...|...+ +....+.|..+.
T Consensus 265 ~DikKaR~llKSvretn-P~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~-cprSeDvWLeai----RLhp~d~aK~vv 338 (913)
T KOG0495|consen 265 EDIKKARLLLKSVRETN-PKHPPGWIASARLEEVAGKLSVARNLIMKGCEE-CPRSEDVWLEAI----RLHPPDVAKTVV 338 (913)
T ss_pred HHHHHHHHHHHHHHhcC-CCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhh-CCchHHHHHHHH----hcCChHHHHHHH
Confidence 57788888998888877 556777777777777778888887776544333 233444554333 556677787777
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 002549 280 ENMLKMGFGKDEMTYNTIIHMYGKQGQHDVALQLYRDMKLSGRNPDV-VTYTVLIDSLGKANKISEAANVMSEMLDASVK 358 (909)
Q Consensus 280 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 358 (909)
....+.. +.++..|.--++. ..+...=..++++.++. .|+. ..|... ......+.|.-++.+..+. ++
T Consensus 339 A~Avr~~-P~Sv~lW~kA~dL---E~~~~~K~RVlRKALe~--iP~sv~LWKaA----VelE~~~darilL~rAvec-cp 407 (913)
T KOG0495|consen 339 ANAVRFL-PTSVRLWLKAADL---ESDTKNKKRVLRKALEH--IPRSVRLWKAA----VELEEPEDARILLERAVEC-CP 407 (913)
T ss_pred HHHHHhC-CCChhhhhhHHhh---hhHHHHHHHHHHHHHHh--CCchHHHHHHH----HhccChHHHHHHHHHHHHh-cc
Confidence 7777653 4445444433332 22334445666666665 3444 345433 3455666688888887764 22
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHH----CCCCCCHHHH
Q 002549 359 PTLRTYSALICGYAKAGNRLEAEKTFYCMRRSGIRPDHLAYSVMLDIFLRFNETNKAMMLYQEMVS----NGFTPDQALY 434 (909)
Q Consensus 359 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~~~ 434 (909)
.+.. |.-++.+..-++.|.+++.+..+. ++.+...|.+-...--.+|..+...+++.+-+. .|+..+...|
T Consensus 408 ~s~d----LwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqW 482 (913)
T KOG0495|consen 408 QSMD----LWLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQW 482 (913)
T ss_pred chHH----HHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHH
Confidence 2333 334556667788888888888775 556777777777777778888877777665443 4666666666
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHhcccHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhccCC
Q 002549 435 EIMIGVLGRENKGEEIRKVVRDMKELSGINMQEISSILVKGECYDHAAEILRSAIRNGIELD--HEKLLSILSSYNVSGR 512 (909)
Q Consensus 435 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~d--~~~~~~l~~~~~~~~~ 512 (909)
..=...+-+.|..-.+. .+....+..|++.. ..||..-.+.|.+.+.
T Consensus 483 l~eAe~~e~agsv~TcQ-------------------------------AIi~avigigvEeed~~~tw~~da~~~~k~~~ 531 (913)
T KOG0495|consen 483 LKEAEACEDAGSVITCQ-------------------------------AIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPA 531 (913)
T ss_pred HHHHHHHhhcCChhhHH-------------------------------HHHHHHHhhccccchhHhHHhhhHHHHHhcch
Confidence 55444554444444433 34444444554432 3467777888888888
Q ss_pred HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhccCCcccchhhHHHHHHHHHhcccHHHHHHHHH
Q 002549 513 HLEACELIEFVKQHASESTPPLTQAFIIMLCKAQKLDAALEEYSNAWGFGFFSKSKTMYESLIHSCEYNERFAEASQVFS 592 (909)
Q Consensus 513 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 592 (909)
.+-|+.++..+++-.|. ...++...+..--..|..++-..+++++...- |.....|......+...|+...|..++.
T Consensus 532 ~~carAVya~alqvfp~-k~slWlra~~~ek~hgt~Esl~Allqkav~~~--pkae~lwlM~ake~w~agdv~~ar~il~ 608 (913)
T KOG0495|consen 532 IECARAVYAHALQVFPC-KKSLWLRAAMFEKSHGTRESLEALLQKAVEQC--PKAEILWLMYAKEKWKAGDVPAARVILD 608 (913)
T ss_pred HHHHHHHHHHHHhhccc-hhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC--CcchhHHHHHHHHHHhcCCcHHHHHHHH
Confidence 88888888888876654 45566666666667888888888888888753 7788888888888888899999998888
Q ss_pred HHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCC
Q 002549 593 DMRFYNIEPSEDLYRSMVVAYCKMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPV 672 (909)
Q Consensus 593 ~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 672 (909)
...+.... +...+...+........++.|+.++.++.. ......+|.--+....-+++.++|+.++++.++. +|.
T Consensus 609 ~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~---~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~ 683 (913)
T KOG0495|consen 609 QAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARS---ISGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPD 683 (913)
T ss_pred HHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhc---cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCc
Confidence 88765432 566777888888888889999999888765 2235667777777788888899999999888887 777
Q ss_pred ChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCchhhHHHHHHHHHhCCCCccHHHHHHHHH
Q 002549 673 DRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQALIVDGRLNELYVVIQELQDMDFKISKSSILLMLD 752 (909)
Q Consensus 673 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 752 (909)
-...|-.++..+-+.++++.|.+.|..-.+.-|. .+..|-.|...--+.|.+..|..++++..-.+ +.+...|...+.
T Consensus 684 f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~-~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir 761 (913)
T KOG0495|consen 684 FHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPN-SIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIR 761 (913)
T ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCC-CchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHH
Confidence 7888888889998999999999998888876555 66778888777778888888999998887766 344556666788
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccCchHHHHHHHHHHHHCCCCCCHHhHHHHHHHhhccCCHHH
Q 002549 753 AFARSGNIFEVKKIYHGMKAAGYFPTMYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDLSIWNSMLKLYTGIEDFKK 832 (909)
Q Consensus 753 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 832 (909)
+-.+.|+.+.|..+..+.++.- +.+-..|.--|....+.++-..+...+.+ +.-|......+...+-...++++
T Consensus 762 ~ElR~gn~~~a~~lmakALQec-p~sg~LWaEaI~le~~~~rkTks~DALkk-----ce~dphVllaia~lfw~e~k~~k 835 (913)
T KOG0495|consen 762 MELRAGNKEQAELLMAKALQEC-PSSGLLWAEAIWLEPRPQRKTKSIDALKK-----CEHDPHVLLAIAKLFWSEKKIEK 835 (913)
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CccchhHHHHHHhccCcccchHHHHHHHh-----ccCCchhHHHHHHHHHHHHHHHH
Confidence 8888999999988888887632 33556777777777777775555544433 55677777777777778889999
Q ss_pred HHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCC
Q 002549 833 TIQVYQEIQEADLQPDE-DSFNTLIIMYCRDCRPEEGLSLMHEMRKLGLEPK 883 (909)
Q Consensus 833 A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 883 (909)
|++-|+++++ +.||. .+|..+-..+.+.|.-++-.+++.+.. ...|.
T Consensus 836 ar~Wf~Ravk--~d~d~GD~wa~fykfel~hG~eed~kev~~~c~--~~EP~ 883 (913)
T KOG0495|consen 836 AREWFERAVK--KDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCE--TAEPT 883 (913)
T ss_pred HHHHHHHHHc--cCCccchHHHHHHHHHHHhCCHHHHHHHHHHHh--ccCCC
Confidence 9999999998 88887 677788888888998888888888877 33454
No 24
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.88 E-value=1.3e-18 Score=195.30 Aligned_cols=377 Identities=11% Similarity=0.031 Sum_probs=291.1
Q ss_pred HhcCCCHHHHHHHHHHHHHhcCCChH------HHHHHHHhcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHH
Q 002549 441 LGRENKGEEIRKVVRDMKELSGINMQ------EISSILVKGECYDHAAEILRSAIRNGIELDHEKLLSILSSYNVSGRHL 514 (909)
Q Consensus 441 ~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~a~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~~~~ 514 (909)
+.+..+++..--++....+......+ .......+.|++++|..+++..+.....+ ...+..++.++...|+++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~ 93 (656)
T PRK15174 15 LLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPD 93 (656)
T ss_pred hhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHH
Confidence 45666676655555444332222221 13345668899999999999998765444 444555567777899999
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhccCCcccchhhHHHHHHHHHhcccHHHHHHHHHHH
Q 002549 515 EACELIEFVKQHASESTPPLTQAFIIMLCKAQKLDAALEEYSNAWGFGFFSKSKTMYESLIHSCEYNERFAEASQVFSDM 594 (909)
Q Consensus 515 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 594 (909)
.|...++.+....|.. ...+..+...+...|++++|++.|+++.... |.+...+..++..+...|++++|...++.+
T Consensus 94 ~A~~~l~~~l~~~P~~-~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~--P~~~~a~~~la~~l~~~g~~~eA~~~~~~~ 170 (656)
T PRK15174 94 AVLQVVNKLLAVNVCQ-PEDVLLVASVLLKSKQYATVADLAEQAWLAF--SGNSQIFALHLRTLVLMDKELQAISLARTQ 170 (656)
T ss_pred HHHHHHHHHHHhCCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 9999999999987764 5567778888999999999999999998875 788899999999999999999999999988
Q ss_pred HhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCCh
Q 002549 595 RFYNIEPSEDLYRSMVVAYCKMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDR 674 (909)
Q Consensus 595 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 674 (909)
......+ ...+.. +..+...|++++|...++.++... +++.......++.++...|++++|+..++++++. .|.+.
T Consensus 171 ~~~~P~~-~~a~~~-~~~l~~~g~~~eA~~~~~~~l~~~-~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~-~p~~~ 246 (656)
T PRK15174 171 AQEVPPR-GDMIAT-CLSFLNKSRLPEDHDLARALLPFF-ALERQESAGLAVDTLCAVGKYQEAIQTGESALAR-GLDGA 246 (656)
T ss_pred HHhCCCC-HHHHHH-HHHHHHcCCHHHHHHHHHHHHhcC-CCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCCH
Confidence 6643322 223323 334778899999999999887642 2233444556678889999999999999999887 56678
Q ss_pred HhHHHHHHHHHHcCCHHH----HHHHHHHHHHcCCCCCcccHHHHHHHHHhcCchhhHHHHHHHHHhCCCCccHHHHHHH
Q 002549 675 KVWNALIKAYAASGCYER----ARAVFNTMMRDGPSPTVDSINGLLQALIVDGRLNELYVVIQELQDMDFKISKSSILLM 750 (909)
Q Consensus 675 ~~~~~l~~~~~~~g~~~~----A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 750 (909)
..+..++.+|...|++++ |...|+++++..|. +...+..++..+...|++++|+..+++..+.. +.+......+
T Consensus 247 ~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~L 324 (656)
T PRK15174 247 ALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMY 324 (656)
T ss_pred HHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 888999999999999985 89999999998776 77788999999999999999999999998865 3345566678
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCchH-HHHHHHHHHHhccCchHHHHHHHHHHHHCCCCCCHHhHHHHHHHhhccCC
Q 002549 751 LDAFARSGNIFEVKKIYHGMKAAGYFPTM-YLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDLSIWNSMLKLYTGIED 829 (909)
Q Consensus 751 ~~~~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 829 (909)
..++.+.|++++|...++.+.... |+. ..+..++..+...|++++|++.|+++.+ ..|+.. ..+
T Consensus 325 a~~l~~~G~~~eA~~~l~~al~~~--P~~~~~~~~~a~al~~~G~~deA~~~l~~al~--~~P~~~-----------~~~ 389 (656)
T PRK15174 325 ARALRQVGQYTAASDEFVQLAREK--GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQ--ARASHL-----------PQS 389 (656)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hChhhc-----------hhh
Confidence 889999999999999999998753 443 3344457788899999999999999987 456653 345
Q ss_pred HHHHHHHHHHHHH
Q 002549 830 FKKTIQVYQEIQE 842 (909)
Q Consensus 830 ~~~A~~~~~~~~~ 842 (909)
+++|...|.+.++
T Consensus 390 ~~ea~~~~~~~~~ 402 (656)
T PRK15174 390 FEEGLLALDGQIS 402 (656)
T ss_pred HHHHHHHHHHHHH
Confidence 6677777777776
No 25
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.87 E-value=1e-18 Score=200.85 Aligned_cols=424 Identities=11% Similarity=0.048 Sum_probs=304.6
Q ss_pred HHHHHHHHhcCCChHH---HHHHHHhcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCC
Q 002549 452 KVVRDMKELSGINMQE---ISSILVKGECYDHAAEILRSAIRNGIELDHEKLLSILSSYNVSGRHLEACELIEFVKQHAS 528 (909)
Q Consensus 452 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~a~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 528 (909)
..++. ....+..+.. ...+....|+.++|+.++...... -+.+...+..+..++...|++++|...++.+++..|
T Consensus 3 ~~~~~-~~~~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~-~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P 80 (765)
T PRK10049 3 SWLRQ-ALKSALSNNQIADWLQIALWAGQDAEVITVYNRYRVH-MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEP 80 (765)
T ss_pred hhhhh-hhccCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 34444 4445556654 446778889999999999888752 244555688888899999999999999999988876
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHhhccCCcccchhhHHHHHHHHHhcccHHHHHHHHHHHHhCCCCC-CHHHHH
Q 002549 529 ESTPPLTQAFIIMLCKAQKLDAALEEYSNAWGFGFFSKSKTMYESLIHSCEYNERFAEASQVFSDMRFYNIEP-SEDLYR 607 (909)
Q Consensus 529 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~ 607 (909)
.. ......++..+...|++++|+..++++.... |.+.. +..+..++...|+.++|+..++++.+. .| +...+.
T Consensus 81 ~~-~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~--P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~--~P~~~~~~~ 154 (765)
T PRK10049 81 QN-DDYQRGLILTLADAGQYDEALVKAKQLVSGA--PDKAN-LLALAYVYKRAGRHWDELRAMTQALPR--APQTQQYPT 154 (765)
T ss_pred CC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHH
Confidence 64 4556678888889999999999999998875 77777 888889999999999999999998874 34 445556
Q ss_pred HHHHHHhhcCChhhHHHHHHHHHHcCCCCCC-----chHHHHHHHHhh-----hcCCh---HHHHHHHHHHHhc-CCCCC
Q 002549 608 SMVVAYCKMDFPETAHFIADQAEKKGIPFED-----LSIYVDIIDAYG-----RLKLW---QKAESLVGCLRQR-CAPVD 673 (909)
Q Consensus 608 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~-----~~~~~---~~A~~~~~~~~~~-~~~~~ 673 (909)
.+...+...+..+.|+..++.+.. .|+. ......++.... ..+++ ++|++.++.+++. ...|+
T Consensus 155 ~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~ 231 (765)
T PRK10049 155 EYVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPD 231 (765)
T ss_pred HHHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCc
Confidence 667777788889989888876543 2221 011222222222 22334 7788888888754 11222
Q ss_pred h-HhHH-HH---HHHHHHcCCHHHHHHHHHHHHHcCCC-CCcccHHHHHHHHHhcCchhhHHHHHHHHHhCCCCc---cH
Q 002549 674 R-KVWN-AL---IKAYAASGCYERARAVFNTMMRDGPS-PTVDSINGLLQALIVDGRLNELYVVIQELQDMDFKI---SK 744 (909)
Q Consensus 674 ~-~~~~-~l---~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~ 744 (909)
. ..+. .. +..+...|++++|+..|+++++.++. |+. ....+..+|...|++++|+.+|+++.+..... ..
T Consensus 232 ~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~ 310 (765)
T PRK10049 232 ATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSD 310 (765)
T ss_pred cchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCCh
Confidence 2 1122 21 23456778999999999999887543 332 22235678889999999999999987654221 12
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-----------Cch---HHHHHHHHHHHhccCchHHHHHHHHHHHHCCC
Q 002549 745 SSILLMLDAFARSGNIFEVKKIYHGMKAAGY-----------FPT---MYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGF 810 (909)
Q Consensus 745 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----------~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 810 (909)
.....+..++...|++++|...++.+.+... .|+ ...+..++..+...|++++|++.++++...
T Consensus 311 ~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~-- 388 (765)
T PRK10049 311 EELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN-- 388 (765)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Confidence 3455566678889999999999999887531 122 234556777888999999999999999873
Q ss_pred CCC-HHhHHHHHHHhhccCCHHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHH
Q 002549 811 KPD-LSIWNSMLKLYTGIEDFKKTIQVYQEIQEADLQPDE-DSFNTLIIMYCRDCRPEEGLSLMHEMRKLGLEPKLDTYK 888 (909)
Q Consensus 811 ~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 888 (909)
.|+ ...+..++..+...|+.++|++.++++++ +.|+. ..+..++..+...|++++|..+++++.+ ..|+.....
T Consensus 389 ~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~--l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~--~~Pd~~~~~ 464 (765)
T PRK10049 389 APGNQGLRIDYASVLQARGWPRAAENELKKAEV--LEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVA--REPQDPGVQ 464 (765)
T ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCCCCHHHH
Confidence 454 46788888888899999999999999999 88975 6677888888999999999999999985 466655444
Q ss_pred HHHHH
Q 002549 889 SLISA 893 (909)
Q Consensus 889 ~l~~~ 893 (909)
.+-+.
T Consensus 465 ~~~~~ 469 (765)
T PRK10049 465 RLARA 469 (765)
T ss_pred HHHHH
Confidence 44433
No 26
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.87 E-value=2.7e-18 Score=197.38 Aligned_cols=419 Identities=10% Similarity=0.037 Sum_probs=317.6
Q ss_pred CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCChH---HHHHHHHhcccHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 002549 428 TPDQALYEIMIGVLGRENKGEEIRKVVRDMKELSGINMQ---EISSILVKGECYDHAAEILRSAIRNGIELDHEKLLSIL 504 (909)
Q Consensus 428 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~a~~~~~~~~~~~~~~d~~~~~~l~ 504 (909)
..++.-..-.+.+....|+.++|++++.+.....+.... .++..+...+++++|...+++++... +.+......++
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la 90 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLI 90 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 445566667778888999999999999999876666663 35567889999999999999988763 33455677888
Q ss_pred HHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhccCCcccchhhHHHHHHHHHhcccH
Q 002549 505 SSYNVSGRHLEACELIEFVKQHASESTPPLTQAFIIMLCKAQKLDAALEEYSNAWGFGFFSKSKTMYESLIHSCEYNERF 584 (909)
Q Consensus 505 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 584 (909)
.++...|+.++|...++.+.+..|.... +..+...+...|+.++|+..++++.+.. |.+...+..+..++...|..
T Consensus 91 ~~l~~~g~~~eA~~~l~~~l~~~P~~~~--~~~la~~l~~~g~~~~Al~~l~~al~~~--P~~~~~~~~la~~l~~~~~~ 166 (765)
T PRK10049 91 LTLADAGQYDEALVKAKQLVSGAPDKAN--LLALAYVYKRAGRHWDELRAMTQALPRA--PQTQQYPTEYVQALRNNRLS 166 (765)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCh
Confidence 8899999999999999999998776544 7788889999999999999999999876 88888888899999889999
Q ss_pred HHHHHHHHHHHhCCCCCCHH------HHHHHHHHHh-----hcCCh---hhHHHHHHHHHHc-CCCCCCchHHHHH----
Q 002549 585 AEASQVFSDMRFYNIEPSED------LYRSMVVAYC-----KMDFP---ETAHFIADQAEKK-GIPFEDLSIYVDI---- 645 (909)
Q Consensus 585 ~~A~~~~~~m~~~~~~p~~~------~~~~l~~~~~-----~~~~~---~~a~~~~~~~~~~-~~~~~~~~~~~~l---- 645 (909)
++|+..++.... .|+.. .....+.... ..+++ ++|+..++.+++. ...|+....+...
T Consensus 167 e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~ 243 (765)
T PRK10049 167 APALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDR 243 (765)
T ss_pred HHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHH
Confidence 999999987653 33320 1111122211 12233 6788888888863 3444443322221
Q ss_pred HHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---CcccHHHHHHHHHhc
Q 002549 646 IDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSP---TVDSINGLLQALIVD 722 (909)
Q Consensus 646 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~ 722 (909)
...+...|++++|+..|+++++.+.+........++..|...|++++|...|+++++..+.. .......+..++.+.
T Consensus 244 l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~ 323 (765)
T PRK10049 244 LGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLES 323 (765)
T ss_pred HHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhc
Confidence 23456779999999999999887432111122235778999999999999999998765442 123456677788999
Q ss_pred CchhhHHHHHHHHHhCCC-----------CccH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Q 002549 723 GRLNELYVVIQELQDMDF-----------KISK---SSILLMLDAFARSGNIFEVKKIYHGMKAAGYFPTMYLYRVMSGL 788 (909)
Q Consensus 723 g~~~~A~~~~~~~~~~~~-----------~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 788 (909)
|++++|.++++++.+... .|+. ..+..+...+...|++++|+++++++.... +.+...+..++..
T Consensus 324 g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l 402 (765)
T PRK10049 324 ENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASV 402 (765)
T ss_pred ccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 999999999999987642 1232 245567788899999999999999998753 3367888999999
Q ss_pred HhccCchHHHHHHHHHHHHCCCCCCH-HhHHHHHHHhhccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 002549 789 FCKGKRVRDVEAMVSEMKEAGFKPDL-SIWNSMLKLYTGIEDFKKTIQVYQEIQEADLQPDEDSFNTLIIMY 859 (909)
Q Consensus 789 ~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 859 (909)
+...|++++|++.++++++ ..||. ..+..++..+...|++++|+..++++++ ..|+......+-..+
T Consensus 403 ~~~~g~~~~A~~~l~~al~--l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~--~~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 403 LQARGWPRAAENELKKAEV--LEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVA--REPQDPGVQRLARAR 470 (765)
T ss_pred HHhcCCHHHHHHHHHHHHh--hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 9999999999999999998 56775 5666677788888999999999999999 899887655554444
No 27
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.86 E-value=1.9e-14 Score=146.01 Aligned_cols=538 Identities=13% Similarity=0.091 Sum_probs=307.3
Q ss_pred CChhHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChHHHHHHHHHHHHcCCCCchHHHHH
Q 002549 94 NQENLAVETFMRAESAVDDTVQVYNAMMGIYARNGRFQKVQELLDLMRKRGCEPDLVSFNTLINARLRSGAMVPNLGVDL 173 (909)
Q Consensus 94 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~a~~~ 173 (909)
+....|+.++....+.+|.++..|.+-.+.--..|++..|..+...-.+. ++-+...|.--++. . .++.|..+
T Consensus 265 ~DikKaR~llKSvretnP~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~-cprSeDvWLeaiRL---h---p~d~aK~v 337 (913)
T KOG0495|consen 265 EDIKKARLLLKSVRETNPKHPPGWIASARLEEVAGKLSVARNLIMKGCEE-CPRSEDVWLEAIRL---H---PPDVAKTV 337 (913)
T ss_pred HHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhh-CCchHHHHHHHHhc---C---ChHHHHHH
Confidence 35667888888887777888888887777777777777776665443332 22333333222211 1 12233333
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCC
Q 002549 174 LNEVRRSGLRPDIITYNTIISACSRESNLEEAMKVYGDLEAHNCQPDLWTYNAMISVYGRCGLFEKAEQLFKELESKGFF 253 (909)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 253 (909)
.....+. -|..+. .-+.+---..+...=.+++++.++.- +.++..|-..+ ...+.+.|.-++.+..+. ++
T Consensus 338 vA~Avr~--~P~Sv~--lW~kA~dLE~~~~~K~RVlRKALe~i-P~sv~LWKaAV----elE~~~darilL~rAvec-cp 407 (913)
T KOG0495|consen 338 VANAVRF--LPTSVR--LWLKAADLESDTKNKKRVLRKALEHI-PRSVRLWKAAV----ELEEPEDARILLERAVEC-CP 407 (913)
T ss_pred HHHHHHh--CCCChh--hhhhHHhhhhHHHHHHHHHHHHHHhC-CchHHHHHHHH----hccChHHHHHHHHHHHHh-cc
Confidence 3333322 122111 01111111122333344455554442 33344443332 233444455555555443 11
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 002549 254 PDAVTYNSLLYAFAREGNVEKVKEISENMLKMGFGKDEMTYNTIIHMYGKQGQHDVALQLYRDMKLSGRNPDVVTYTVLI 333 (909)
Q Consensus 254 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 333 (909)
.+. -|.-+|++...|+.|.+++....+. ++.+..+|.+-...--..|+.+....+..+-..
T Consensus 408 ~s~----dLwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~-------------- 468 (913)
T KOG0495|consen 408 QSM----DLWLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLS-------------- 468 (913)
T ss_pred chH----HHHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHH--------------
Confidence 111 1223344455555555555555442 344555555444444445554444444332111
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCC
Q 002549 334 DSLGKANKISEAANVMSEMLDASVKPTLRTYSALICGYAKAGNRLEAEKTFYCMRRSGIRP--DHLAYSVMLDIFLRFNE 411 (909)
Q Consensus 334 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~ 411 (909)
++...|+..+...|..=...|-..|..-.+..+.......|+.- ...||..-...|.+.+.
T Consensus 469 -----------------~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~ 531 (913)
T KOG0495|consen 469 -----------------ELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPA 531 (913)
T ss_pred -----------------HHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcch
Confidence 11223444444444444444444444444444444444444322 24566666677777777
Q ss_pred HhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHhcccHHHHHHHHHHHHHc
Q 002549 412 TNKAMMLYQEMVSNGFTPDQALYEIMIGVLGRENKGEEIRKVVRDMKELSGINMQEISSILVKGECYDHAAEILRSAIRN 491 (909)
Q Consensus 412 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 491 (909)
++-|..+|...+.- ++.+...|......--..|..++...++++.....
T Consensus 532 ~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~------------------------------ 580 (913)
T KOG0495|consen 532 IECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC------------------------------ 580 (913)
T ss_pred HHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC------------------------------
Confidence 77777777777653 12244555555555555666666666666655422
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhccCCcccchhhH
Q 002549 492 GIELDHEKLLSILSSYNVSGRHLEACELIEFVKQHASESTPPLTQAFIIMLCKAQKLDAALEEYSNAWGFGFFSKSKTMY 571 (909)
Q Consensus 492 ~~~~d~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 571 (909)
+.....|......+...|++..|..++..+.+..+. +..++.+-+........++.|..+|.++... .++...|
T Consensus 581 --pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~---sgTeRv~ 654 (913)
T KOG0495|consen 581 --PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSI---SGTERVW 654 (913)
T ss_pred --CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhcc---CCcchhh
Confidence 222333444455666678888888888888777666 5667777777777788888888888777764 3567777
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCCchHHHHHHHHhh
Q 002549 572 ESLIHSCEYNERFAEASQVFSDMRFYNIEPSE-DLYRSMVVAYCKMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYG 650 (909)
Q Consensus 572 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 650 (909)
.--+......+..++|+.++++.++. .|+- ..|..+.+.+-+.++.+.|...|..-.+ ..|..+..|..++..-.
T Consensus 655 mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k--~cP~~ipLWllLakleE 730 (913)
T KOG0495|consen 655 MKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTK--KCPNSIPLWLLLAKLEE 730 (913)
T ss_pred HHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccc--cCCCCchHHHHHHHHHH
Confidence 77666666777888888888776653 4553 3466666677777777777777766555 56777788888888888
Q ss_pred hcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCchhh
Q 002549 651 RLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQALIVDGRLNE 727 (909)
Q Consensus 651 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 727 (909)
+.|....|..++++..-. .|.+...|-..|++=.+.|+.+.|..+..++++.-|. +-..|.--|....+.++-..
T Consensus 731 k~~~~~rAR~ildrarlk-NPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~-sg~LWaEaI~le~~~~rkTk 805 (913)
T KOG0495|consen 731 KDGQLVRARSILDRARLK-NPKNALLWLESIRMELRAGNKEQAELLMAKALQECPS-SGLLWAEAIWLEPRPQRKTK 805 (913)
T ss_pred HhcchhhHHHHHHHHHhc-CCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cchhHHHHHHhccCcccchH
Confidence 888888888888877655 4667778888888888888888888888888776555 55555555554444444333
No 28
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.86 E-value=2.2e-17 Score=184.88 Aligned_cols=394 Identities=11% Similarity=0.082 Sum_probs=199.5
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhccCCcccchhhHHHHHHHHHhc
Q 002549 502 SILSSYNVSGRHLEACELIEFVKQHASESTPPLTQAFIIMLCKAQKLDAALEEYSNAWGFGFFSKSKTMYESLIHSCEYN 581 (909)
Q Consensus 502 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 581 (909)
.++..+...|+.++|...++...... +........++..|...|++++|+++|+++.+.. |.++..+..++..+...
T Consensus 73 dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~d--P~n~~~l~gLa~~y~~~ 149 (822)
T PRK14574 73 DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRNEKRWDQALALWQSSLKKD--PTNPDLISGMIMTQADA 149 (822)
T ss_pred HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHhhc
Confidence 33444444455555555555444110 1111112222334445555555555555555544 44455555555555555
Q ss_pred ccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCCchHHHHHHHHhhhcCChHHHHHH
Q 002549 582 ERFAEASQVFSDMRFYNIEPSEDLYRSMVVAYCKMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESL 661 (909)
Q Consensus 582 g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 661 (909)
++.++|++.++++... .|+...+..++..+...++..+|+..++++++ ..|++...+..+..++.+.|-...|.++
T Consensus 150 ~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~--~~P~n~e~~~~~~~~l~~~~~~~~a~~l 225 (822)
T PRK14574 150 GRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVR--LAPTSEEVLKNHLEILQRNRIVEPALRL 225 (822)
T ss_pred CCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCcHHHHHH
Confidence 5555555555555432 23333332222233233444345555555555 4455555555555555555555555555
Q ss_pred HHHHHhcCCCCChHhH--HHHHHHHHHc---------C---CHHHHHHHHHHHHHcCC-CCCccc-H----HHHHHHHHh
Q 002549 662 VGCLRQRCAPVDRKVW--NALIKAYAAS---------G---CYERARAVFNTMMRDGP-SPTVDS-I----NGLLQALIV 721 (909)
Q Consensus 662 ~~~~~~~~~~~~~~~~--~~l~~~~~~~---------g---~~~~A~~~~~~~~~~~~-~~~~~~-~----~~l~~~~~~ 721 (909)
.++-... +.+....+ ...+.-.++. + -.+.|+.-++.++..-+ .|...+ | .-.+-++..
T Consensus 226 ~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~ 304 (822)
T PRK14574 226 AKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLV 304 (822)
T ss_pred HHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHH
Confidence 5443222 11111000 0000001100 0 23445555555554211 122111 1 122344556
Q ss_pred cCchhhHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-----CCchHHHHHHHHHHHhccCchH
Q 002549 722 DGRLNELYVVIQELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYHGMKAAG-----YFPTMYLYRVMSGLFCKGKRVR 796 (909)
Q Consensus 722 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-----~~p~~~~~~~l~~~~~~~g~~~ 796 (909)
.|++.++++.++.+...+.+....+...+.++|...+.+++|..+|+.+.... ..++......|..+|...++++
T Consensus 305 r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~ 384 (822)
T PRK14574 305 RHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLD 384 (822)
T ss_pred hhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHH
Confidence 66777777777777766665556666667777777777777777777765421 1223333456666777777777
Q ss_pred HHHHHHHHHHHCCC-----------CCC--HH-hHHHHHHHhhccCCHHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHh
Q 002549 797 DVEAMVSEMKEAGF-----------KPD--LS-IWNSMLKLYTGIEDFKKTIQVYQEIQEADLQP-DEDSFNTLIIMYCR 861 (909)
Q Consensus 797 ~A~~~~~~~~~~~~-----------~p~--~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~ 861 (909)
+|..+++++.+..- .|| -. ....++..+...|++.+|++.+++++. ..| |......++.++..
T Consensus 385 ~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~--~aP~n~~l~~~~A~v~~~ 462 (822)
T PRK14574 385 KAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSS--TAPANQNLRIALASIYLA 462 (822)
T ss_pred HHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHh
Confidence 77777777665210 111 11 123344555666777777777777766 566 34666667777777
Q ss_pred cCChhhHHHHHHHHHHcCCCCC-hhhHHHHHHHHhccCCHHHHHHhh
Q 002549 862 DCRPEEGLSLMHEMRKLGLEPK-LDTYKSLISAFGKQQQLEQAEELL 907 (909)
Q Consensus 862 ~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~ 907 (909)
.|.+.+|++.++.+. .+.|+ .......+.++...|++++|..+.
T Consensus 463 Rg~p~~A~~~~k~a~--~l~P~~~~~~~~~~~~al~l~e~~~A~~~~ 507 (822)
T PRK14574 463 RDLPRKAEQELKAVE--SLAPRSLILERAQAETAMALQEWHQMELLT 507 (822)
T ss_pred cCCHHHHHHHHHHHh--hhCCccHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 777777777775555 33444 445556666666777777776554
No 29
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.85 E-value=2.4e-14 Score=151.67 Aligned_cols=684 Identities=13% Similarity=0.088 Sum_probs=344.9
Q ss_pred CChhHHHHHHHHHHHcCCCCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 002549 128 GRFQKVQELLDLMRKRGCEPDLVSFNTLINARLRSGAMVPNLGVDLLNEVRRSGLRPDIITYNTIISACSRESNLEEAMK 207 (909)
Q Consensus 128 ~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 207 (909)
|++++|..++.+..+.. +.+...|-+|-..+-..|+. .++...+-... +--+.|..-|..+.....+.|+++.|.-
T Consensus 153 g~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~--eK~l~~~llAA-HL~p~d~e~W~~ladls~~~~~i~qA~~ 228 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDI--EKALNFWLLAA-HLNPKDYELWKRLADLSEQLGNINQARY 228 (895)
T ss_pred CCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccH--HHHHHHHHHHH-hcCCCChHHHHHHHHHHHhcccHHHHHH
Confidence 55555555555554442 23344455555555444432 22222111111 1111133444444444445555555555
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHH----HHHHHHHHcCCHHHHHHHHHHHH
Q 002549 208 VYGDLEAHNCQPDLWTYNAMISVYGRCGLFEKAEQLFKELESKGFFPDAVTYN----SLLYAFAREGNVEKVKEISENML 283 (909)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~----~ll~~~~~~g~~~~a~~~~~~~~ 283 (909)
+|.+.++.. +++....-.-...|-+.|+...|.+.|.++.......|..-+. .+++.+...++-+.|.+.++...
T Consensus 229 cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~ 307 (895)
T KOG2076|consen 229 CYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGAL 307 (895)
T ss_pred HHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 555555443 2333333333344445555555555555554442211111111 12223333344444444444433
Q ss_pred HCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH--HCCCCCC
Q 002549 284 KMG-FGKDEMTYNTIIHMYGKQGQHDVALQLYRDMKLSGRNPDVVTYTVLIDSLGKANKISEAANVMSEML--DASVKPT 360 (909)
Q Consensus 284 ~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~ 360 (909)
..+ -..+...++.++..|.+...++.|......+......+|...|.+-= .++ .-+.-.. ..+..++
T Consensus 308 s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~-----~~~-----~~~~~~~~~~~~~s~~ 377 (895)
T KOG2076|consen 308 SKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDE-----RRR-----EEPNALCEVGKELSYD 377 (895)
T ss_pred hhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhh-----hcc-----ccccccccCCCCCCcc
Confidence 311 11223344444444444444444444444444332233333221000 000 0000000 0112223
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 002549 361 LRTYSALICGYAKAGNRLEAEKTFYCMRRSG--IRPDHLAYSVMLDIFLRFNETNKAMMLYQEMVSNGFTPDQALYEIMI 438 (909)
Q Consensus 361 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll 438 (909)
...+. +.-+..+.+..+....+.....+.. +.-+...|..+..++...|++.+|..+|..+......-+...|..+.
T Consensus 378 l~v~r-l~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a 456 (895)
T KOG2076|consen 378 LRVIR-LMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLA 456 (895)
T ss_pred chhHh-HhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHH
Confidence 33311 1223334444444555555555555 33456788889999999999999999999998874445677899999
Q ss_pred HHHhcCCCHHHHHHHHHHHHHhcCCChHH---HHHHHHhcccHHHHHHHHHHHHH--------cCCCCCHHHHHHHHHHH
Q 002549 439 GVLGRENKGEEIRKVVRDMKELSGINMQE---ISSILVKGECYDHAAEILRSAIR--------NGIELDHEKLLSILSSY 507 (909)
Q Consensus 439 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~a~~~~~~~~~--------~~~~~d~~~~~~l~~~~ 507 (909)
.+|...|..++|.+.++......|...+. ++.++.+.|+.++|.+.+..+.. .+..|+..........+
T Consensus 457 ~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l 536 (895)
T KOG2076|consen 457 RCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDIL 536 (895)
T ss_pred HHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHH
Confidence 99999999999999999999988887775 56788889999999999888641 12233333333334444
Q ss_pred hccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhccCCcccchhhHHHHHHHHHhcccHHHH
Q 002549 508 NVSGRHLEACELIEFVKQHASESTPPLTQAFIIMLCKAQKLDAALEEYSNAWGFGFFSKSKTMYESLIHSCEYNERFAEA 587 (909)
Q Consensus 508 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 587 (909)
...|+.++-..+...++.... .. .|.- -+..++...- ... +..+........++.+..+.++....
T Consensus 537 ~~~gk~E~fi~t~~~Lv~~~~------~~----~~~f-~~~~k~r~~~--~~~-~~~~~~~~~~~~~~~~~~k~~~~~~~ 602 (895)
T KOG2076|consen 537 FQVGKREEFINTASTLVDDFL------KK----RYIF-PRNKKKRRRA--IAG-TTSKRYSELLKQIIRAREKATDDNVM 602 (895)
T ss_pred HHhhhHHHHHHHHHHHHHHHH------HH----HHhc-chHHHHHHHh--hcc-ccccccchhHHHHHHHHhccCchHHh
Confidence 445554443333322222100 00 0000 0000000000 000 00011111111122222211111100
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCCc-hHHHHHHHHhhhcCChHHHHHHHHHHH
Q 002549 588 SQVFSDMRFYNIEPSEDLYRSMVVAYCKMDFPETAHFIADQAEKKGIPFEDL-SIYVDIIDAYGRLKLWQKAESLVGCLR 666 (909)
Q Consensus 588 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~ 666 (909)
..-. ... ..+.-....++.-++. ..+..++.++.+.+++++|..+...+.
T Consensus 603 ~~~l----------------------------~d~-~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~ 653 (895)
T KOG2076|consen 603 EKAL----------------------------SDG-TEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTAL 653 (895)
T ss_pred hhcc----------------------------cch-hhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 0000 000 0000111123333333 556667778888899999998888776
Q ss_pred hcC-CCCChH----hHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCCcccHHHHHHHHHhcCchhhHHHHHHHHH
Q 002549 667 QRC-APVDRK----VWNALIKAYAASGCYERARAVFNTMMRD-----GPSPTVDSINGLLQALIVDGRLNELYVVIQELQ 736 (909)
Q Consensus 667 ~~~-~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 736 (909)
... +-.++. .-...+.+.+..+++..|.+.++.++.. .+. ....|+...+.+.+.|+----...+..+.
T Consensus 654 ~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~-q~~l~n~~~s~~~~~~q~v~~~R~~~~~~ 732 (895)
T KOG2076|consen 654 EAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVY-QLNLWNLDFSYFSKYGQRVCYLRLIMRLL 732 (895)
T ss_pred hhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 531 112222 2334556677789999999999998876 222 23445555555555555444444444444
Q ss_pred hCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCch-HHHHHHHHHHHh----------ccCchHHHHHHHHHH
Q 002549 737 DMDFKISKSSILLMLDAFARSGNIFEVKKIYHGMKAAGYFPT-MYLYRVMSGLFC----------KGKRVRDVEAMVSEM 805 (909)
Q Consensus 737 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~----------~~g~~~~A~~~~~~~ 805 (909)
......++.............+.+..|+..+-...... |+ +.+--+++-++. ++-..-++..++.+.
T Consensus 733 ~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~--pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY 810 (895)
T KOG2076|consen 733 VKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQN--PDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRY 810 (895)
T ss_pred ccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhC--CCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 33322223333333344566788888888887777643 43 222222222221 222234566666666
Q ss_pred HHCCCCC-CHHhHHHHHHHhhccCCHHHHHHHHHHHHHcCCCCC-------------hhhHHHHHHHHHhcCChhhHHHH
Q 002549 806 KEAGFKP-DLSIWNSMLKLYTGIEDFKKTIQVYQEIQEADLQPD-------------EDSFNTLIIMYCRDCRPEEGLSL 871 (909)
Q Consensus 806 ~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-------------~~~~~~l~~~~~~~g~~~~A~~~ 871 (909)
.+..... ...++..++.+|...|=..-|..+|+++++ +.|- ..+-.+|.-.|-.+|+...|.++
T Consensus 811 ~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~--~~p~~~~~~~~d~~dLrkeAA~NL~LIY~~SGn~~lArqi 888 (895)
T KOG2076|consen 811 KELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLE--VSPKDVTDPKEDNYDLRKEAAYNLHLIYKKSGNMQLARQI 888 (895)
T ss_pred HHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhC--CCccccccccCCcccHHHHHHhhhhhhhccCCcHHHHHHH
Confidence 5532111 235778899999999999999999999999 5441 23456777889999999999999
Q ss_pred HHHH
Q 002549 872 MHEM 875 (909)
Q Consensus 872 ~~~~ 875 (909)
+++-
T Consensus 889 l~ky 892 (895)
T KOG2076|consen 889 LEKY 892 (895)
T ss_pred HHhh
Confidence 8763
No 30
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.83 E-value=2.8e-16 Score=151.89 Aligned_cols=500 Identities=11% Similarity=0.048 Sum_probs=311.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHH
Q 002549 290 DEMTYNTIIHMYGKQGQHDVALQLYRDMKLSGRNPDVVTYT-VLIDSLGKANKISEAANVMSEMLDASVKPTL----RTY 364 (909)
Q Consensus 290 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~ 364 (909)
.-.+...|..-|.......+|+..++-+.+....|+.-... .+...+.+...+.+|+++++..++.-...+. ...
T Consensus 200 tfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil 279 (840)
T KOG2003|consen 200 TFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKIL 279 (840)
T ss_pred hHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHH
Confidence 34445556667777788888999998888877777765433 3556778888899999999888765322222 233
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHH--------HH
Q 002549 365 SALICGYAKAGNRLEAEKTFYCMRRSGIRPDHLAYSVMLDIFLRFNETNKAMMLYQEMVSNGFTPDQALY--------EI 436 (909)
Q Consensus 365 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~--------~~ 436 (909)
+.+.-.+.+.|.++.|...|+...+. .|+..+-..|+-++...|+-++..+.|.+|+.-...||..-| ..
T Consensus 280 ~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ 357 (840)
T KOG2003|consen 280 NNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDN 357 (840)
T ss_pred hhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchH
Confidence 44444567888999999988887764 578776666666666778888888889888875434443221 01
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHhcccHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHhccCCHHH
Q 002549 437 MIGVLGRENKGEEIRKVVRDMKELSGINMQEISSILVKGECYDHAAEILRSAIRNGIELDHEK-LLSILSSYNVSGRHLE 515 (909)
Q Consensus 437 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~d~~~-~~~l~~~~~~~~~~~~ 515 (909)
|+.--.+. ..++.|.+.... .-++++-.--.++..-+.||-.. +.-.+...-.+...+.
T Consensus 358 ll~eai~n-------d~lk~~ek~~ka-------------~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~l 417 (840)
T KOG2003|consen 358 LLNEAIKN-------DHLKNMEKENKA-------------DAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAEL 417 (840)
T ss_pred HHHHHHhh-------HHHHHHHHhhhh-------------hHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhh
Confidence 11111000 011111110000 00111111111111112222111 0000000000000000
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhccCCcccchhhHHHHHHHHHhcccHHHHHHHHHHHH
Q 002549 516 ACELIEFVKQHASESTPPLTQAFIIMLCKAQKLDAALEEYSNAWGFGFFSKSKTMYESLIHSCEYNERFAEASQVFSDMR 595 (909)
Q Consensus 516 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 595 (909)
|.+ +- -.-...+.++|+++.|+++++.+.
T Consensus 418 a~d---------------le------------------------------------i~ka~~~lk~~d~~~aieilkv~~ 446 (840)
T KOG2003|consen 418 AID---------------LE------------------------------------INKAGELLKNGDIEGAIEILKVFE 446 (840)
T ss_pred hhh---------------hh------------------------------------hhHHHHHHhccCHHHHHHHHHHHH
Confidence 000 00 011122445555555555555554
Q ss_pred hCCCCCCHHHHHHH--HHHHhhcCChhhHHHHHHHHHHcCCCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCC
Q 002549 596 FYNIEPSEDLYRSM--VVAYCKMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVD 673 (909)
Q Consensus 596 ~~~~~p~~~~~~~l--~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 673 (909)
+.+-+..+..-+.+ +..+.--.++..|.++.+.++. ++.-++.+...-++.-...|++++|.+.|++++.. ...-
T Consensus 447 ~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln--~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~n-dasc 523 (840)
T KOG2003|consen 447 KKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALN--IDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNN-DASC 523 (840)
T ss_pred hccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhc--ccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcC-chHH
Confidence 33222222221111 1122223356667777666654 44445566666677777889999999999988876 1222
Q ss_pred hHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCchhhHHHHHHHHHhCCCCccHHHHHHHHHH
Q 002549 674 RKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQALIVDGRLNELYVVIQELQDMDFKISKSSILLMLDA 753 (909)
Q Consensus 674 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 753 (909)
+.....++-.+-..|++++|++.|-++...-.+ +...+..+.+.|....+...|++++.+.... ++.++.++..|.+.
T Consensus 524 ~ealfniglt~e~~~~ldeald~f~klh~il~n-n~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dl 601 (840)
T KOG2003|consen 524 TEALFNIGLTAEALGNLDEALDCFLKLHAILLN-NAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADL 601 (840)
T ss_pred HHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHH
Confidence 333344455677889999999999887654333 6667778888898899999999998876543 46668888899999
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccCchHHHHHHHHHHHHCCCCCCHHhHHHHHHHhh-ccCCHHH
Q 002549 754 FARSGNIFEVKKIYHGMKAAGYFPTMYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDLSIWNSMLKLYT-GIEDFKK 832 (909)
Q Consensus 754 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~ 832 (909)
|-+.|+...|.+++-.--.. ++.+..+..+|...|....-.++|+..|+++-- +.|+...|..++..|. +.|++++
T Consensus 602 ydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqk 678 (840)
T KOG2003|consen 602 YDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQK 678 (840)
T ss_pred hhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHH
Confidence 99999999998877654432 345889999999999999999999999999875 7899999999988775 4599999
Q ss_pred HHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCChhhHHHHHH
Q 002549 833 TIQVYQEIQEADLQP-DEDSFNTLIIMYCRDCRPEEGLSLMH 873 (909)
Q Consensus 833 A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~ 873 (909)
|+++|+...+ .-| |..++..|++.....|. .+|.++-+
T Consensus 679 a~d~yk~~hr--kfpedldclkflvri~~dlgl-~d~key~~ 717 (840)
T KOG2003|consen 679 AFDLYKDIHR--KFPEDLDCLKFLVRIAGDLGL-KDAKEYAD 717 (840)
T ss_pred HHHHHHHHHH--hCccchHHHHHHHHHhccccc-hhHHHHHH
Confidence 9999999987 456 66888899998888775 33444433
No 31
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.81 E-value=1.2e-14 Score=163.05 Aligned_cols=446 Identities=12% Similarity=0.064 Sum_probs=219.0
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 002549 196 CSRESNLEEAMKVYGDLEAHNCQPDL--WTYNAMISVYGRCGLFEKAEQLFKELESKGFFPDAVTYNSLLYAFAREGNVE 273 (909)
Q Consensus 196 ~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~ 273 (909)
..+.|+++.|+..|++..+.. |+. ..+ .++..+...|+.++|+..+++..... .........+...+...|+++
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~~gdyd 119 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRNEKRWD 119 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCCHH
Confidence 445666666666666666553 322 222 55666666666666666666665211 112222233344555566666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002549 274 KVKEISENMLKMGFGKDEMTYNTIIHMYGKQGQHDVALQLYRDMKLSGRNPDVVTYTVLIDSLGKANKISEAANVMSEML 353 (909)
Q Consensus 274 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 353 (909)
+|.++++++.+.. +.+...+..++..|...++.++|++.++++... .|+...+..++..+...++..+|++.++++.
T Consensus 120 ~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll 196 (822)
T PRK14574 120 QALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAV 196 (822)
T ss_pred HHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 6666666666654 334555555556666666666666666666554 3444444333333333444444666666665
Q ss_pred HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHH
Q 002549 354 DASVKPTLRTYSALICGYAKAGNRLEAEKTFYCMRRSGIRPDHLAYSVMLDIFLRFNETNKAMMLYQEMVSNGFTPDQAL 433 (909)
Q Consensus 354 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 433 (909)
+.. +-+...+..+.....+.|-...|.++..+- |+..+-...... +.+.|.+..+- +..++.
T Consensus 197 ~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~------p~~f~~~~~~~l-----~~~~~a~~vr~----a~~~~~-- 258 (822)
T PRK14574 197 RLA-PTSEEVLKNHLEILQRNRIVEPALRLAKEN------PNLVSAEHYRQL-----ERDAAAEQVRM----AVLPTR-- 258 (822)
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhC------ccccCHHHHHHH-----HHHHHHHHHhh----cccccc--
Confidence 543 123444455555555555555555443331 221111111000 01111111110 101100
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHhcccHHHHHHHHHHHHHc-CCCC-CHHH----HHHHHHHH
Q 002549 434 YEIMIGVLGRENKGEEIRKVVRDMKELSGINMQEISSILVKGECYDHAAEILRSAIRN-GIEL-DHEK----LLSILSSY 507 (909)
Q Consensus 434 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~-d~~~----~~~l~~~~ 507 (909)
....++..+ +.|+.-++.++.. +..| +... ..-.+-++
T Consensus 259 --------~~~~r~~~~----------------------------d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL 302 (822)
T PRK14574 259 --------SETERFDIA----------------------------DKALADYQNLLTRWGKDPEAQADYQRARIDRLGAL 302 (822)
T ss_pred --------cchhhHHHH----------------------------HHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHH
Confidence 001111122 2233333333321 1111 1111 12233455
Q ss_pred hccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhccCC----cccchhhHHHHHHHHHhccc
Q 002549 508 NVSGRHLEACELIEFVKQHASESTPPLTQAFIIMLCKAQKLDAALEEYSNAWGFGF----FSKSKTMYESLIHSCEYNER 583 (909)
Q Consensus 508 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~~li~~~~~~g~ 583 (909)
...++..++++.++.+...+.+...-+..+++++|...++.++|..+|+.+..... .+++......|..++...++
T Consensus 303 ~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~ 382 (822)
T PRK14574 303 LVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQ 382 (822)
T ss_pred HHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhccc
Confidence 56666777777777766665544455666666777777777777777776644321 12233334667777777788
Q ss_pred HHHHHHHHHHHHhCCC-----------CCCH--H-HHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCCchHHHHHHHHh
Q 002549 584 FAEASQVFSDMRFYNI-----------EPSE--D-LYRSMVVAYCKMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAY 649 (909)
Q Consensus 584 ~~~A~~~~~~m~~~~~-----------~p~~--~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 649 (909)
+++|..+++.+.+... .||+ . .....+..+.-.|+..+|.+.++.++. ..|.+..+...++.++
T Consensus 383 ~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~--~aP~n~~l~~~~A~v~ 460 (822)
T PRK14574 383 LDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSS--TAPANQNLRIALASIY 460 (822)
T ss_pred HHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHH
Confidence 8888888777765211 1111 1 122233344555555555555555544 4455555555555555
Q ss_pred hhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 002549 650 GRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGP 705 (909)
Q Consensus 650 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 705 (909)
...|...+|++.++.+... .|.+..+....+.++...|++++|..+.+.+.+..|
T Consensus 461 ~~Rg~p~~A~~~~k~a~~l-~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~P 515 (822)
T PRK14574 461 LARDLPRKAEQELKAVESL-APRSLILERAQAETAMALQEWHQMELLTDDVISRSP 515 (822)
T ss_pred HhcCCHHHHHHHHHHHhhh-CCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCC
Confidence 5555555555555444443 333444555555555555555555555555555443
No 32
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.80 E-value=3e-14 Score=137.33 Aligned_cols=448 Identities=16% Similarity=0.183 Sum_probs=300.3
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChHHHHHHHHHHHHcC--CCCchHHHHHHHHHHHCCCCCCHHHH
Q 002549 112 DTVQVYNAMMGIYARNGRFQKVQELLDLMRKRGCEPDLVSFNTLINARLRSG--AMVPNLGVDLLNEVRRSGLRPDIITY 189 (909)
Q Consensus 112 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~ 189 (909)
..+++=|.|+.. ...|..+++.-+++.|+..|++-+...-..|+...+-.+ .+-. .-++.|-.|.+.|-+ +..+
T Consensus 114 ~~V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~-~E~~~Fv~~~~~~E~-S~~s- 189 (625)
T KOG4422|consen 114 LQVETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPF-AEWEEFVGMRNFGED-STSS- 189 (625)
T ss_pred hhhcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcc-hhHHHHhhccccccc-cccc-
Confidence 345667777654 457899999999999999998888777777776544332 2222 235566677665533 2222
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 002549 190 NTIISACSRESNLEEAMKVYGDLEAHNCQPDLWTYNAMISVYGRCGLFEKAEQLFKELESKGFFPDAVTYNSLLYAFARE 269 (909)
Q Consensus 190 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 269 (909)
.+.|++.+ -+|+.. +....|+.+||.+.|+--..++|.+++++......+.+..+||.+|.+-.
T Consensus 190 -------WK~G~vAd--L~~E~~-----PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S-- 253 (625)
T KOG4422|consen 190 -------WKSGAVAD--LLFETL-----PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS-- 253 (625)
T ss_pred -------cccccHHH--HHHhhc-----CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH--
Confidence 35566554 444443 44678999999999999999999999999998888889999999997754
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHH-
Q 002549 270 GNVEKVKEISENMLKMGFGKDEMTYNTIIHMYGKQGQHDV----ALQLYRDMKLSGRNPDVVTYTVLIDSLGKANKISE- 344 (909)
Q Consensus 270 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~- 344 (909)
+....+++.+|....+.||..|+|+++.+..+.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+
T Consensus 254 --~~~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~ 331 (625)
T KOG4422|consen 254 --YSVGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKV 331 (625)
T ss_pred --hhccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhh
Confidence 33348899999999999999999999999999998766 46778899999999999999999999999888754
Q ss_pred HHHHHHHHHH----CCCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC----CCCC---HHHHHHHHHHHHHc
Q 002549 345 AANVMSEMLD----ASVKP----TLRTYSALICGYAKAGNRLEAEKTFYCMRRSG----IRPD---HLAYSVMLDIFLRF 409 (909)
Q Consensus 345 A~~~~~~~~~----~~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~ 409 (909)
|..++.+... +..+| +...|...+..|.+..+.+-|.++..-+.... +.|+ ..-|..+....|..
T Consensus 332 as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~ 411 (625)
T KOG4422|consen 332 ASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQM 411 (625)
T ss_pred hHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHH
Confidence 4444444432 22222 44566777888889999999998876665321 2333 34567788888999
Q ss_pred CCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHhcccHHHHHHHHHHHH
Q 002549 410 NETNKAMMLYQEMVSNGFTPDQALYEIMIGVLGRENKGEEIRKVVRDMKELSGINMQEISSILVKGECYDHAAEILRSAI 489 (909)
Q Consensus 410 ~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 489 (909)
...+.-...|+.|.-+-+-|+..+..-++++..-.|.++-..+++.++..-... -+.+-..+++..+.
T Consensus 412 es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght------------~r~~l~eeil~~L~ 479 (625)
T KOG4422|consen 412 ESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHT------------FRSDLREEILMLLA 479 (625)
T ss_pred HHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhh------------hhHHHHHHHHHHHh
Confidence 999999999999998878889999999999999999999999988887762111 11222334444444
Q ss_pred HcCCCCCHHH---HHHHHHHHhccCCHHHHH-HHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhccCCcc
Q 002549 490 RNGIELDHEK---LLSILSSYNVSGRHLEAC-ELIEFVKQHASESTPPLTQAFIIMLCKAQKLDAALEEYSNAWGFGFFS 565 (909)
Q Consensus 490 ~~~~~~d~~~---~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 565 (909)
+....|+... +.....-|. . ++.++. ..-.++.+.. -.....+..+..+.+.|..++|.+++.-....+.--
T Consensus 480 ~~k~hp~tp~r~Ql~~~~ak~a-a-d~~e~~e~~~~R~r~~~--~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~i 555 (625)
T KOG4422|consen 480 RDKLHPLTPEREQLQVAFAKCA-A-DIKEAYESQPIRQRAQD--WPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKI 555 (625)
T ss_pred cCCCCCCChHHHHHHHHHHHHH-H-HHHHHHHhhHHHHHhcc--CChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcC
Confidence 4444443221 221111110 0 111111 1111222222 223344555666677777777777776664333222
Q ss_pred cchhhHH---HHHHHHHhcccHHHHHHHHHHHHhC
Q 002549 566 KSKTMYE---SLIHSCEYNERFAEASQVFSDMRFY 597 (909)
Q Consensus 566 ~~~~~~~---~li~~~~~~g~~~~A~~~~~~m~~~ 597 (909)
|-....| .++....+.+....|+..++-|...
T Consensus 556 p~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~ 590 (625)
T KOG4422|consen 556 PRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAF 590 (625)
T ss_pred CCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Confidence 2222233 3344444556666666666666543
No 33
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.78 E-value=1.3e-13 Score=145.03 Aligned_cols=752 Identities=12% Similarity=0.048 Sum_probs=407.2
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChHH
Q 002549 73 RHWFSPNARMLATILAVLGKANQENLAVETFMRAESA-VDDTVQVYNAMMGIYARNGRFQKVQELLDLMRKRGCEPDLVS 151 (909)
Q Consensus 73 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~ 151 (909)
..|+.|+..+|..+|.-|+..|..+.|- +|.-|... .+.+...++.++.+....++.+.+. .|...|
T Consensus 18 ~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDt 85 (1088)
T KOG4318|consen 18 ISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADT 85 (1088)
T ss_pred HhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhH
Confidence 3456777777778888887777777776 55444322 3555667777777777777666654 466677
Q ss_pred HHHHHHHHHHcCCCCchHHHHHHHH-HH-------HCC-----------------CCCCHHHHHHHHHHHHhcCCHHHHH
Q 002549 152 FNTLINARLRSGAMVPNLGVDLLNE-VR-------RSG-----------------LRPDIITYNTIISACSRESNLEEAM 206 (909)
Q Consensus 152 ~~~ll~~~~~~~~~~~~~a~~~~~~-~~-------~~~-----------------~~~~~~~~~~li~~~~~~g~~~~A~ 206 (909)
|+.|+.+|...|++.. ++..++ |. ..| .-||.. +.+......|-++.+.
T Consensus 86 yt~Ll~ayr~hGDli~---fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~illlv~eglwaqll 159 (1088)
T KOG4318|consen 86 YTNLLKAYRIHGDLIL---FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAILLLVLEGLWAQLL 159 (1088)
T ss_pred HHHHHHHHHhccchHH---HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHHHHHHHHHHHHHH
Confidence 7777777777775421 111111 10 111 122221 2233334446666666
Q ss_pred HHHHHHHhCCC-CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 002549 207 KVYGDLEAHNC-QPDLWTYNAMISVYGRCGLFEKAEQLFKELESKGFFPDAVTYNSLLYAFAREGNVEKVKEISENMLKM 285 (909)
Q Consensus 207 ~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 285 (909)
+++..++.... .|..+ .++-......+-+ ++........-.|++.+|..++.+-...|+.+.|..++.+|.+.
T Consensus 160 kll~~~Pvsa~~~p~~v----fLrqnv~~ntpve--kLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~ 233 (1088)
T KOG4318|consen 160 KLLAKVPVSAWNAPFQV----FLRQNVVDNTPVE--KLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEK 233 (1088)
T ss_pred HHHhhCCcccccchHHH----HHHHhccCCchHH--HHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHc
Confidence 66665543221 11111 2333333333322 22222222111478888888888888889999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 002549 286 GFGKDEMTYNTIIHMYGKQGQHDVALQLYRDMKLSGRNPDVVTYTVLIDSLGKANKISEAANVMSEMLDASVKPTLRTYS 365 (909)
Q Consensus 286 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 365 (909)
|++.+..-|-.|+.+ .++..-+..+++-|.+.|+.|+..|+.-.+-.+.++|....+ +.|. +....++
T Consensus 234 gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~--------~e~s-q~~hg~t 301 (1088)
T KOG4318|consen 234 GFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYG--------EEGS-QLAHGFT 301 (1088)
T ss_pred CCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhc--------cccc-chhhhhh
Confidence 988888777766655 677788888888888889899988888777666665541111 1121 2222222
Q ss_pred HHHHHHHHcC-----CHHH-----HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHC--CCCC-CHH
Q 002549 366 ALICGYAKAG-----NRLE-----AEKTFYCMRRSGIRPDHLAYSVMLDIFLRFNETNKAMMLYQEMVSN--GFTP-DQA 432 (909)
Q Consensus 366 ~l~~~~~~~g-----~~~~-----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~-~~~ 432 (909)
+-+..-.-.| +.+. ....+.+..-.|+......|...+. ....|+-++..++-..+..- ...+ ++.
T Consensus 302 Aavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~ 380 (1088)
T KOG4318|consen 302 AAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVD 380 (1088)
T ss_pred HHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHH
Confidence 2222222222 1111 1111122112343333333433322 22357777777776666532 1222 234
Q ss_pred HHHHHHHHHhcCCCHHHHHHHH--HHHHHh---cCCChHHHHHHHHhcccHHHHHHHHHHHH----HcCCCC-------C
Q 002549 433 LYEIMIGVLGRENKGEEIRKVV--RDMKEL---SGINMQEISSILVKGECYDHAAEILRSAI----RNGIEL-------D 496 (909)
Q Consensus 433 ~~~~ll~~~~~~g~~~~a~~~~--~~~~~~---~~~~~~~~~~~~~~~~~~~~a~~~~~~~~----~~~~~~-------d 496 (909)
.+..++.-|.+.-+..-...+. ...... ....|. ++..+... +...++.-+.... .....| -
T Consensus 381 a~~~~lrqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~-vsell~~l-rkns~lr~lv~Lss~Eler~he~~~~~~h~i 458 (1088)
T KOG4318|consen 381 AFGALLRQYFRRIERHICSRIYYAGQGLSLNLNSEDTPR-VSELLENL-RKNSFLRQLVGLSSTELERSHEPWPLIAHLI 458 (1088)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHH-HHHHHHHh-CcchHHHHHhhhhHHHHhcccccchhhhhHH
Confidence 4555555444322111111111 111111 000010 11111110 1111111111111 111111 1
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhccC-CcccchhhHHHHH
Q 002549 497 HEKLLSILSSYNVSGRHLEACELIEFVKQHASESTPPLTQAFIIMLCKAQKLDAALEEYSNAWGFG-FFSKSKTMYESLI 575 (909)
Q Consensus 497 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~li 575 (909)
......++..++..-+..++...-+.....- -...|..++...+.....+.|...+++..... .+.-+..-+..+.
T Consensus 459 rdi~~ql~l~l~se~n~lK~l~~~ekye~~l---f~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~ 535 (1088)
T KOG4318|consen 459 RDIANQLHLTLNSEYNKLKILCDEEKYEDLL---FAGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQ 535 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHH
Confidence 1123445556666666666554433332221 12578889999999999999998888875432 1122445577888
Q ss_pred HHHHhcccHHHHHHHHHHHHhCCC-CCC-HHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCCchHHHHHHHHhhhcC
Q 002549 576 HSCEYNERFAEASQVFSDMRFYNI-EPS-EDLYRSMVVAYCKMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLK 653 (909)
Q Consensus 576 ~~~~~~g~~~~A~~~~~~m~~~~~-~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 653 (909)
+.+.+.+....+..++.++.+.-. .|+ ..++-.++......|+.+.-.++++-+...|+... ..+.....+.+
T Consensus 536 dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~et-----gPl~~vhLrkd 610 (1088)
T KOG4318|consen 536 DLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSET-----GPLWMVHLRKD 610 (1088)
T ss_pred HHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhc-----ccceEEEeecc
Confidence 889999999999999998875322 222 34566677778889999999999888877766542 34556677888
Q ss_pred ChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHH--cCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCchhhHHHH
Q 002549 654 LWQKAESLVGCLRQRCAPVDRKVWNALIKAYAA--SGCYERARAVFNTMMRDGPSPTVDSINGLLQALIVDGRLNELYVV 731 (909)
Q Consensus 654 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 731 (909)
+...|.++++...+. ..+.+.....+.+.+.+ ..+++.+.++-..+. .|.+.|++.+|.++
T Consensus 611 d~s~a~ea~e~~~qk-yk~~P~~~e~lcrlv~ke~td~~qk~mDls~~iq----------------~f~k~g~~~~a~di 673 (1088)
T KOG4318|consen 611 DQSAAQEAPEPEEQK-YKPYPKDLEGLCRLVYKETTDSPQKTMDLSIPIQ----------------KFEKLGSCVDAGDI 673 (1088)
T ss_pred chhhhhhcchHHHHH-hcCChHHHHHHHHHHHhhccccHHHHHhhcchhH----------------HHHhcccccchhhc
Confidence 888888888877665 56666666555555432 234444443332221 13333333333222
Q ss_pred H---------------------------HHHHhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHH
Q 002549 732 I---------------------------QELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYHGMKAAGYFPTMYLYRV 784 (909)
Q Consensus 732 ~---------------------------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ 784 (909)
. +.+.+.| ....|+..|.+.|+++.|..+|.++. +.|+......
T Consensus 674 ~etpG~r~r~~RDr~~de~e~~~lEll~elt~~lg------~~dRLL~sy~~~g~~erA~glwnK~Q---V~k~~~~l~~ 744 (1088)
T KOG4318|consen 674 TETPGVRCRNGRDRDTDEGEIVPLELLLELTHELG------KNDRLLQSYLEEGRIERASGLWNKDQ---VSKSPMKLFH 744 (1088)
T ss_pred cccCcccccCCCccccccCccccHHHHHHHHhHhH------HHHHHHHHHHhhhHHHHHHhHHhhCc---CCcchHHHHH
Confidence 2 2222222 12237788889999999999999887 6687777777
Q ss_pred HHHHHhccCch---HHHHHHHHHHHHCCCCC----CHHhHHHHHHHhhccCCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 002549 785 MSGLFCKGKRV---RDVEAMVSEMKEAGFKP----DLSIWNSMLKLYTGIEDFKKTIQVYQEIQEADLQPDEDSFNTLII 857 (909)
Q Consensus 785 l~~~~~~~g~~---~~A~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 857 (909)
|+..+.+...- .++....+++.+ ..| +...|...+...++....+.|.+.+++..+....-+...+...++
T Consensus 745 LAsIlr~~n~evdvPe~q~e~ekas~--~~~~f~ttt~~~~~~a~~a~q~~qkkaAkk~f~r~eeq~~v~tad~ls~f~k 822 (1088)
T KOG4318|consen 745 LASILRRMNEEVDVPEIQAETEKASE--LRTLFPTTTCYYEGYAFFATQTEQKKAAKKCFERLEEQLTVSTADELSDFLK 822 (1088)
T ss_pred HHHHHHhhchhccchhHHHHHHHHHh--cccccccchHhhhhhHHHHhhHHHHHHHHHHHHHHHHccCCCcHHHHHHHHH
Confidence 77777655443 333333344433 222 222233333333444455678888888887532224577778888
Q ss_pred HHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHH
Q 002549 858 MYCRDCRPEEGLSLMHEMRKLGLEPKLDTYKSLISAFGKQQQLEQAEE 905 (909)
Q Consensus 858 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 905 (909)
++.... ..|.+.. ..|...+...-..++..+.+.-.+-+|..
T Consensus 823 ~L~~nd--~~aa~sh----a~Ges~~~l~tsRli~~llRrlgl~EA~~ 864 (1088)
T KOG4318|consen 823 CLVKND--QLAAQSH----ASGESSKELLTSRLINILLRRLGLAEALS 864 (1088)
T ss_pred HHHhcC--HHHHHhc----ccccchhhhhhHHHHHHHHHHhhHHHHHH
Confidence 888665 2222222 22444443333345555555555555554
No 34
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=1.9e-11 Score=130.20 Aligned_cols=192 Identities=13% Similarity=0.129 Sum_probs=144.3
Q ss_pred HHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCch
Q 002549 646 IDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQALIVDGRL 725 (909)
Q Consensus 646 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 725 (909)
+......+-+++|..+|++. ..+..+.+.|+. ..++.++|.+..++. . ....|..+..+-.+.|..
T Consensus 1055 a~iai~~~LyEEAF~ifkkf-----~~n~~A~~VLie---~i~~ldRA~efAe~~----n--~p~vWsqlakAQL~~~~v 1120 (1666)
T KOG0985|consen 1055 AEIAIENQLYEEAFAIFKKF-----DMNVSAIQVLIE---NIGSLDRAYEFAERC----N--EPAVWSQLAKAQLQGGLV 1120 (1666)
T ss_pred HHHHhhhhHHHHHHHHHHHh-----cccHHHHHHHHH---HhhhHHHHHHHHHhh----C--ChHHHHHHHHHHHhcCch
Confidence 34444555666776666653 224444444443 346788888877775 2 345799999999999999
Q ss_pred hhHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccCchHHHHHHHHHH
Q 002549 726 NELYVVIQELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYHGMKAAGYFPTMYLYRVMSGLFCKGKRVRDVEAMVSEM 805 (909)
Q Consensus 726 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 805 (909)
.+|++-|-+ ..|+..|.-+++...+.|+|++-.+++....+..-.|.+. ..|+.+|++.+++.+-++++
T Consensus 1121 ~dAieSyik------adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi--- 1189 (1666)
T KOG0985|consen 1121 KDAIESYIK------ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFI--- 1189 (1666)
T ss_pred HHHHHHHHh------cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh---
Confidence 999988876 4567889999999999999999999999888876566544 56888999999988866655
Q ss_pred HHCCCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHH
Q 002549 806 KEAGFKPDLSIWNSMLKLYTGIEDFKKTIQVYQEIQEADLQPDEDSFNTLIIMYCRDCRPEEGLSLMHEM 875 (909)
Q Consensus 806 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 875 (909)
.-||..-...++.-|...|.++.|.-+|...- .|..|+..+...|.+..|...-+++
T Consensus 1190 ----~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vS---------N~a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1190 ----AGPNVANIQQVGDRCFEEKMYEAAKLLYSNVS---------NFAKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred ----cCCCchhHHHHhHHHhhhhhhHHHHHHHHHhh---------hHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 35788888888888999898888877776543 4777788888888888887776655
No 35
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.77 E-value=5.6e-14 Score=147.85 Aligned_cols=246 Identities=12% Similarity=0.058 Sum_probs=137.1
Q ss_pred HHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CCcccHHHHHHHHHh
Q 002549 644 DIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPS--PTVDSINGLLQALIV 721 (909)
Q Consensus 644 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~ 721 (909)
.+...+++.-+..+++..-++....-+ +..|..|+.-+...++.+.|....++....... .+..-+..+.+.+.+
T Consensus 464 ql~l~l~se~n~lK~l~~~ekye~~lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r 540 (1088)
T KOG4318|consen 464 QLHLTLNSEYNKLKILCDEEKYEDLLF---AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQR 540 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh---hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHH
Confidence 344445555555555544444333212 266777888887788888888887777543221 133345666777777
Q ss_pred cCchhhHHHHHHHHHhCCC-Ccc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccCchHHHH
Q 002549 722 DGRLNELYVVIQELQDMDF-KIS-KSSILLMLDAFARSGNIFEVKKIYHGMKAAGYFPTMYLYRVMSGLFCKGKRVRDVE 799 (909)
Q Consensus 722 ~g~~~~A~~~~~~~~~~~~-~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 799 (909)
.+...++..++..+.+.-. .|. ..++..+++.....|+.+...++++-+...|+.-+ ..++....+.++...|.
T Consensus 541 ~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~et----gPl~~vhLrkdd~s~a~ 616 (1088)
T KOG4318|consen 541 LAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSET----GPLWMVHLRKDDQSAAQ 616 (1088)
T ss_pred hHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhc----ccceEEEeeccchhhhh
Confidence 8888888888877766322 121 34455566666777777777777777776554432 23333344555555555
Q ss_pred HHHHHHHHCCCCCCHHhHHHHHHH---------------------hhccCCHHHHHHHHHHH---HHcC---------CC
Q 002549 800 AMVSEMKEAGFKPDLSIWNSMLKL---------------------YTGIEDFKKTIQVYQEI---QEAD---------LQ 846 (909)
Q Consensus 800 ~~~~~~~~~~~~p~~~~~~~l~~~---------------------~~~~g~~~~A~~~~~~~---~~~~---------~~ 846 (909)
+.++.-.++ .+|.......+... |.+.|++.+|.++.+.= .+.+ +.
T Consensus 617 ea~e~~~qk-yk~~P~~~e~lcrlv~ke~td~~qk~mDls~~iq~f~k~g~~~~a~di~etpG~r~r~~RDr~~de~e~~ 695 (1088)
T KOG4318|consen 617 EAPEPEEQK-YKPYPKDLEGLCRLVYKETTDSPQKTMDLSIPIQKFEKLGSCVDAGDITETPGVRCRNGRDRDTDEGEIV 695 (1088)
T ss_pred hcchHHHHH-hcCChHHHHHHHHHHHhhccccHHHHHhhcchhHHHHhcccccchhhccccCcccccCCCccccccCccc
Confidence 555444332 23333332222222 22333333332222210 0000 00
Q ss_pred C---------ChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCH
Q 002549 847 P---------DEDSFNTLIIMYCRDCRPEEGLSLMHEMRKLGLEPKLDTYKSLISAFGKQQQL 900 (909)
Q Consensus 847 p---------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 900 (909)
| +......|...|.+.|+++.|..++.++. ..|+..+..+|+.++.+.+.-
T Consensus 696 ~lEll~elt~~lg~~dRLL~sy~~~g~~erA~glwnK~Q---V~k~~~~l~~LAsIlr~~n~e 755 (1088)
T KOG4318|consen 696 PLELLLELTHELGKNDRLLQSYLEEGRIERASGLWNKDQ---VSKSPMKLFHLASILRRMNEE 755 (1088)
T ss_pred cHHHHHHHHhHhHHHHHHHHHHHhhhHHHHHHhHHhhCc---CCcchHHHHHHHHHHHhhchh
Confidence 0 11224456678888899999998888885 678888888888887766543
No 36
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.77 E-value=1e-13 Score=133.74 Aligned_cols=305 Identities=16% Similarity=0.247 Sum_probs=157.6
Q ss_pred HHHHHHhccCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH--hcCChhHH-HHHHHHhhhC----------------
Q 002549 49 CFVVKWVGQVSWQRALEVYEWLNLRHWFSPNARMLATILAVLG--KANQENLA-VETFMRAESA---------------- 109 (909)
Q Consensus 49 ~~~~~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~a-~~~~~~~~~~---------------- 109 (909)
..+++...++....+.-+++.|. +.+.+.++.+--.+++... ...++.-| ++.|-.+...
T Consensus 120 ~nL~kmIS~~EvKDs~ilY~~m~-~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL 198 (625)
T KOG4422|consen 120 NNLLKMISSREVKDSCILYERMR-SENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADL 198 (625)
T ss_pred hHHHHHHhhcccchhHHHHHHHH-hcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHH
Confidence 45667777888888888998884 4446777776666655433 22222222 2233333221
Q ss_pred ----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHCCCCCC
Q 002549 110 ----VDDTVQVYNAMMGIYARNGRFQKVQELLDLMRKRGCEPDLVSFNTLINARLRSGAMVPNLGVDLLNEVRRSGLRPD 185 (909)
Q Consensus 110 ----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 185 (909)
.|.+..+|..||.++|+--..++|.+++++-.+.....+..+||.+|.+-+-+. ..+++.+|....+.||
T Consensus 199 ~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~------~K~Lv~EMisqkm~Pn 272 (625)
T KOG4422|consen 199 LFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV------GKKLVAEMISQKMTPN 272 (625)
T ss_pred HHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc------cHHHHHHHHHhhcCCc
Confidence 234555666666666666666666666666655555556666666665543332 1345556665556666
Q ss_pred HHHHHHHHHHHHhcCCHHHH----HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhH-HHHHHHHHHH----CCCCC--
Q 002549 186 IITYNTIISACSRESNLEEA----MKVYGDLEAHNCQPDLWTYNAMISVYGRCGLFEK-AEQLFKELES----KGFFP-- 254 (909)
Q Consensus 186 ~~~~~~li~~~~~~g~~~~A----~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~----~~~~~-- 254 (909)
..|+|+++++..+.|+++.| .+++.+|++.|+.|+..+|..+|..+++.++..+ |..++.++.. +.++|
T Consensus 273 l~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~ 352 (625)
T KOG4422|consen 273 LFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPIT 352 (625)
T ss_pred hHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCC
Confidence 66666666666666655433 3344555566666666666666666665555533 2223322221 11111
Q ss_pred --CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH---HHH
Q 002549 255 --DAVTYNSLLYAFAREGNVEKVKEISENMLKMGFGKDEMTYNTIIHMYGKQGQHDVALQLYRDMKLSGRNPDV---VTY 329 (909)
Q Consensus 255 --~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~ 329 (909)
|...|...+..|.+..+.+-|.++..-+.... |. .-+.|+. .-|
T Consensus 353 p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~---N~----------------------------~~ig~~~~~~fYy 401 (625)
T KOG4422|consen 353 PTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGD---NW----------------------------KFIGPDQHRNFYY 401 (625)
T ss_pred CchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC---ch----------------------------hhcChHHHHHHHH
Confidence 33344445555555555555555444332210 00 0001111 123
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 002549 330 TVLIDSLGKANKISEAANVMSEMLDASVKPTLRTYSALICGYAKAGNRLEAEKTFYCMRRSG 391 (909)
Q Consensus 330 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 391 (909)
..+....|+....+.-...|+.|+-.-+-|+..+...++++..-.|.++-..+++..+...|
T Consensus 402 r~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~g 463 (625)
T KOG4422|consen 402 RKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYG 463 (625)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhh
Confidence 34444555555555555566665554445555555555555555555555555555555443
No 37
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.75 E-value=3e-14 Score=138.11 Aligned_cols=474 Identities=13% Similarity=0.103 Sum_probs=276.8
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHHCCCCCC----HHHHHHH
Q 002549 223 TYNAMISVYGRCGLFEKAEQLFKELESKGFFPDAVTYN-SLLYAFAREGNVEKVKEISENMLKMGFGKD----EMTYNTI 297 (909)
Q Consensus 223 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~-~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l 297 (909)
+...|..-|.......+|+..++-+.+....||.-... .+...+.+...+.+|.+.++..++.-...+ ....+.+
T Consensus 203 vl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~ni 282 (840)
T KOG2003|consen 203 VLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNI 282 (840)
T ss_pred HHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhc
Confidence 33445556666777788888888887776666654432 234556677888888888887776532222 2234555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC------------HHHHH
Q 002549 298 IHMYGKQGQHDVALQLYRDMKLSGRNPDVVTYTVLIDSLGKANKISEAANVMSEMLDASVKPT------------LRTYS 365 (909)
Q Consensus 298 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~------------~~~~~ 365 (909)
...+.+.|.++.|+..|+...+. .|+..+-..|+-++..-|+.++..+.|..|+..-..|| ....+
T Consensus 283 gvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~ 360 (840)
T KOG2003|consen 283 GVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLN 360 (840)
T ss_pred CeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHH
Confidence 55677888888888888887765 57777655566566667888888888888875432222 22222
Q ss_pred HHHH-----HHHHcCCHHHHHHHH---HHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHH
Q 002549 366 ALIC-----GYAKAGNRLEAEKTF---YCMRRSGIRPDHLAYSVMLDIFLRFNETNKAMMLYQEMVSNGFTPDQALYEIM 437 (909)
Q Consensus 366 ~l~~-----~~~~~g~~~~a~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 437 (909)
.-|. -.-+.+ -..|++.. .++...-+.|+... + .+-+.+.+..-....+ -...-..-
T Consensus 361 eai~nd~lk~~ek~~-ka~aek~i~ta~kiiapvi~~~fa~------g------~dwcle~lk~s~~~~l--a~dlei~k 425 (840)
T KOG2003|consen 361 EAIKNDHLKNMEKEN-KADAEKAIITAAKIIAPVIAPDFAA------G------CDWCLESLKASQHAEL--AIDLEINK 425 (840)
T ss_pred HHHhhHHHHHHHHhh-hhhHHHHHHHHHHHhccccccchhc------c------cHHHHHHHHHhhhhhh--hhhhhhhH
Confidence 2221 111111 11122211 11111112222110 0 0111111111100000 00001112
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhcCCChHHH----HHH-HHh-cccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC
Q 002549 438 IGVLGRENKGEEIRKVVRDMKELSGINMQEI----SSI-LVK-GECYDHAAEILRSAIRNGIELDHEKLLSILSSYNVSG 511 (909)
Q Consensus 438 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~----~~~-~~~-~~~~~~a~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~ 511 (909)
...|.+.|+++.|.++++-+.+.+....... ..+ +.+ +.++..|.+.-..++.. -.-+......-.+.....|
T Consensus 426 a~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~-dryn~~a~~nkgn~~f~ng 504 (840)
T KOG2003|consen 426 AGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNI-DRYNAAALTNKGNIAFANG 504 (840)
T ss_pred HHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcc-cccCHHHhhcCCceeeecC
Confidence 2346677777777777777766554444332 222 222 33455555555544422 1223333333334455667
Q ss_pred CHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhccCCcccchhhHHHHHHHHHhcccHHHHHHHH
Q 002549 512 RHLEACELIEFVKQHASESTPPLTQAFIIMLCKAQKLDAALEEYSNAWGFGFFSKSKTMYESLIHSCEYNERFAEASQVF 591 (909)
Q Consensus 512 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 591 (909)
++++|.+.+..++..+..- ......+...+...|++++|++.|-++... ...+......+...|....+..+|++++
T Consensus 505 d~dka~~~ykeal~ndasc-~ealfniglt~e~~~~ldeald~f~klh~i--l~nn~evl~qianiye~led~aqaie~~ 581 (840)
T KOG2003|consen 505 DLDKAAEFYKEALNNDASC-TEALFNIGLTAEALGNLDEALDCFLKLHAI--LLNNAEVLVQIANIYELLEDPAQAIELL 581 (840)
T ss_pred cHHHHHHHHHHHHcCchHH-HHHHHHhcccHHHhcCHHHHHHHHHHHHHH--HHhhHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 7777777777776654332 222222344466677788887777665432 2456667777777777777788888777
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCC
Q 002549 592 SDMRFYNIEPSEDLYRSMVVAYCKMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAP 671 (909)
Q Consensus 592 ~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 671 (909)
-+.... ++.|+..+..+...|-+.|+...|.+.+-.--. .-|.+..+...|+..|....-+++|+.+|+++.- ..
T Consensus 582 ~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaal--iq 656 (840)
T KOG2003|consen 582 MQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQ 656 (840)
T ss_pred HHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cC
Confidence 655431 344566777777788888887777776544333 5677788888888888888888888888887653 46
Q ss_pred CChHhHHHHHH-HHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcC
Q 002549 672 VDRKVWNALIK-AYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQALIVDG 723 (909)
Q Consensus 672 ~~~~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 723 (909)
|+..-|..++. |+.+.|++.+|.++++.+.++.|. +..++..|++.+...|
T Consensus 657 p~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpe-dldclkflvri~~dlg 708 (840)
T KOG2003|consen 657 PNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPE-DLDCLKFLVRIAGDLG 708 (840)
T ss_pred ccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCcc-chHHHHHHHHHhcccc
Confidence 77778877664 445668888888888888887776 7888888887776666
No 38
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.72 E-value=6.4e-15 Score=156.94 Aligned_cols=285 Identities=11% Similarity=-0.040 Sum_probs=185.5
Q ss_pred cCChhhHHHHHHHHHHcCCCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCC-hHhHHHHHHHHHHcCCHHHHH
Q 002549 616 MDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVD-RKVWNALIKAYAASGCYERAR 694 (909)
Q Consensus 616 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~ 694 (909)
.|+++.|.+.+.+..+ ..|+....+...+.++...|+++.|.+.+.++.+. .|.+ ..+.-.....+...|+++.|.
T Consensus 97 ~g~~~~A~~~l~~~~~--~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~-~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 97 EGDYAKAEKLIAKNAD--HAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL-AGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred CCCHHHHHHHHHHHhh--cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 4556666655555544 33444444455556666667777777777776554 2222 223334466667777777777
Q ss_pred HHHHHHHHcCCCCCcccHHHHHHHHHhcCchhhHHHHHHHHHhCCCCccHHHHHHHHHHH---HhcCCHHHHHHHHHHHH
Q 002549 695 AVFNTMMRDGPSPTVDSINGLLQALIVDGRLNELYVVIQELQDMDFKISKSSILLMLDAF---ARSGNIFEVKKIYHGMK 771 (909)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~~a~~~~~~~~ 771 (909)
..++.+.+..|. +...+..+...+.+.|++++|.+++.++.+.+..++.........++ ...+..+++.+.+..+.
T Consensus 174 ~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~ 252 (409)
T TIGR00540 174 HGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWW 252 (409)
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 777777777665 55566677777777777777777777777765433322211111111 23333333444555555
Q ss_pred hcCC---CchHHHHHHHHHHHhccCchHHHHHHHHHHHHCCCCCCHHh---HHHHHHHhhccCCHHHHHHHHHHHHHcCC
Q 002549 772 AAGY---FPTMYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDLSI---WNSMLKLYTGIEDFKKTIQVYQEIQEADL 845 (909)
Q Consensus 772 ~~~~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 845 (909)
+... ..++..+..++..+...|+.++|++.+++.++. .||... ...........++.+.+++.+++.++ .
T Consensus 253 ~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk--~ 328 (409)
T TIGR00540 253 KNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAK--N 328 (409)
T ss_pred HHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHH--h
Confidence 4321 126778888888888999999999999998873 455532 12222223345788888889988888 7
Q ss_pred CCChh---hHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHhhc
Q 002549 846 QPDED---SFNTLIIMYCRDCRPEEGLSLMHEMRKLGLEPKLDTYKSLISAFGKQQQLEQAEELLK 908 (909)
Q Consensus 846 ~p~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 908 (909)
.|++. ...++++.+.+.|+|++|.++|++.......|++..+.+++..+.+.|+.++|.++++
T Consensus 329 ~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~ 394 (409)
T TIGR00540 329 VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQ 394 (409)
T ss_pred CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 88554 4558899999999999999999954444567888888899999999999999988775
No 39
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.72 E-value=7.7e-14 Score=137.13 Aligned_cols=228 Identities=14% Similarity=0.102 Sum_probs=186.9
Q ss_pred HHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHh
Q 002549 642 YVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQALIV 721 (909)
Q Consensus 642 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 721 (909)
+..-+..+.-.|+...|.+-|+.+++. .+-+...|--+..+|...++.++-...|+++.+.+|. ++.+|..-...+.-
T Consensus 329 l~~~gtF~fL~g~~~~a~~d~~~~I~l-~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~fl 406 (606)
T KOG0547|consen 329 LLLRGTFHFLKGDSLGAQEDFDAAIKL-DPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFL 406 (606)
T ss_pred HHHhhhhhhhcCCchhhhhhHHHHHhc-CcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHH
Confidence 333445566778999999999999887 4444455777788899999999999999999999888 88889999999999
Q ss_pred cCchhhHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccCchHHHHHH
Q 002549 722 DGRLNELYVVIQELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYHGMKAAGYFPTMYLYRVMSGLFCKGKRVRDVEAM 801 (909)
Q Consensus 722 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 801 (909)
.+++++|+.-|++.+..+ +.+...|-.+.-+..+.+.++++...|+..+++ ++..+++|+-....+...++++.|.+.
T Consensus 407 L~q~e~A~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~ 484 (606)
T KOG0547|consen 407 LQQYEEAIADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQ 484 (606)
T ss_pred HHHHHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHH
Confidence 999999999999988765 333556677777888999999999999999874 344678999999999999999999999
Q ss_pred HHHHHHCCCCCCH-------HhH-HHHHHHhhccCCHHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCChhhHHHHH
Q 002549 802 VSEMKEAGFKPDL-------SIW-NSMLKLYTGIEDFKKTIQVYQEIQEADLQPDE-DSFNTLIIMYCRDCRPEEGLSLM 872 (909)
Q Consensus 802 ~~~~~~~~~~p~~-------~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~ 872 (909)
|+.+++ +.|+. ..+ +--+-.+.-.+++.+|+++++++++ +.|.. .++-.|+......|+.++|+++|
T Consensus 485 YD~ai~--LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e--~Dpkce~A~~tlaq~~lQ~~~i~eAielF 560 (606)
T KOG0547|consen 485 YDKAIE--LEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIE--LDPKCEQAYETLAQFELQRGKIDEAIELF 560 (606)
T ss_pred HHHHHh--hccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHc--cCchHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 999987 56652 111 1111123345899999999999999 99976 78999999999999999999999
Q ss_pred HHHHH
Q 002549 873 HEMRK 877 (909)
Q Consensus 873 ~~~~~ 877 (909)
++...
T Consensus 561 Eksa~ 565 (606)
T KOG0547|consen 561 EKSAQ 565 (606)
T ss_pred HHHHH
Confidence 99875
No 40
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.71 E-value=5.9e-11 Score=116.57 Aligned_cols=445 Identities=11% Similarity=0.142 Sum_probs=258.4
Q ss_pred cCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 002549 234 CGLFEKAEQLFKELESKGFFPDAVTYNSLLYAFAREGNVEKVKEISENMLKMGFGKDEMTYNTIIHMYGKQGQHDVALQL 313 (909)
Q Consensus 234 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 313 (909)
.+++..|..+|++.+..... +...|...+.+-.+..++..|..+++..+..- |.-...|-..+.+--..|++..|.++
T Consensus 86 q~e~~RARSv~ERALdvd~r-~itLWlkYae~Emknk~vNhARNv~dRAvt~l-PRVdqlWyKY~ymEE~LgNi~gaRqi 163 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVDYR-NITLWLKYAEFEMKNKQVNHARNVWDRAVTIL-PRVDQLWYKYIYMEEMLGNIAGARQI 163 (677)
T ss_pred HHHHHHHHHHHHHHHhcccc-cchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc-chHHHHHHHHHHHHHHhcccHHHHHH
Confidence 33444444444444433211 33334444444444444444444444444321 11112233333333344555555555
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CC
Q 002549 314 YRDMKLSGRNPDVVTYTVLIDSLGKANKISEAANVMSEMLDASVKPTLRTYSALICGYAKAGNRLEAEKTFYCMRRS-GI 392 (909)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~ 392 (909)
|+...+- .|+..+|.+.|..-.+....+.|..+++..+-. .|++.+|.--...=-+.|....|..+|+...+. |-
T Consensus 164 ferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~ 239 (677)
T KOG1915|consen 164 FERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGD 239 (677)
T ss_pred HHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhh
Confidence 5554443 455555555555555555555555555554432 345555544444444555555555555544431 00
Q ss_pred -CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCChHHHH
Q 002549 393 -RPDHLAYSVMLDIFLRFNETNKAMMLYQEMVSNGFTPD--QALYEIMIGVLGRENKGEEIRKVVRDMKELSGINMQEIS 469 (909)
Q Consensus 393 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 469 (909)
.-+...+.+....-.++..++.|.-+|+-.++. ++.+ ...|..+...--+-|+.....+.+-.-.+
T Consensus 240 d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk---------- 308 (677)
T KOG1915|consen 240 DEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRK---------- 308 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhh----------
Confidence 011222333333334555666777777666654 1212 23333333333333443333322211000
Q ss_pred HHHHhcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChh-hHHHHHHH---HH--
Q 002549 470 SILVKGECYDHAAEILRSAIRNGIELDHEKLLSILSSYNVSGRHLEACELIEFVKQHASESTPP-LTQAFIIM---LC-- 543 (909)
Q Consensus 470 ~~~~~~~~~~~a~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~---~~-- 543 (909)
--|+..+.. -+.|-.+|-..+..-...|+.+...++++.++...|+.... .+...+-. |+
T Consensus 309 -------------~qYE~~v~~-np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYaly 374 (677)
T KOG1915|consen 309 -------------FQYEKEVSK-NPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALY 374 (677)
T ss_pred -------------hHHHHHHHh-CCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHH
Confidence 012222222 23455566666666677788888888888888766554322 22332222 21
Q ss_pred ---hcCCHHHHHHHHHHhhccCCcccchhhHHHHHH----HHHhcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhc
Q 002549 544 ---KAQKLDAALEEYSNAWGFGFFSKSKTMYESLIH----SCEYNERFAEASQVFSDMRFYNIEPSEDLYRSMVVAYCKM 616 (909)
Q Consensus 544 ---~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~----~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 616 (909)
...+.+.+.++|+...+. +|....++.-+=- --.++.+...|..++...+ |.-|...+|...+..-.+.
T Consensus 375 eEle~ed~ertr~vyq~~l~l--IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL 450 (677)
T KOG1915|consen 375 EELEAEDVERTRQVYQACLDL--IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQL 450 (677)
T ss_pred HHHHhhhHHHHHHHHHHHHhh--cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHH
Confidence 367889999999998874 5666655554433 3446788999999988776 6789999999999999999
Q ss_pred CChhhHHHHHHHHHHcCCCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCC-CCChHhHHHHHHHHHHcCCHHHHHH
Q 002549 617 DFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCA-PVDRKVWNALIKAYAASGCYERARA 695 (909)
Q Consensus 617 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 695 (909)
++++.+..+|++.++ ..|.+..++...+..-...|+++.|..+|+-+++... .-....|.+.|.-=...|.++.|..
T Consensus 451 ~efDRcRkLYEkfle--~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~ 528 (677)
T KOG1915|consen 451 REFDRCRKLYEKFLE--FSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARA 528 (677)
T ss_pred hhHHHHHHHHHHHHh--cChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHH
Confidence 999999999999998 7899999999999999999999999999999886521 1124567777777778899999999
Q ss_pred HHHHHHHcCCCCCcccHHHHHH
Q 002549 696 VFNTMMRDGPSPTVDSINGLLQ 717 (909)
Q Consensus 696 ~~~~~~~~~~~~~~~~~~~l~~ 717 (909)
++++.++.. +.+..|-+...
T Consensus 529 LYerlL~rt--~h~kvWisFA~ 548 (677)
T KOG1915|consen 529 LYERLLDRT--QHVKVWISFAK 548 (677)
T ss_pred HHHHHHHhc--ccchHHHhHHH
Confidence 999999853 34446665554
No 41
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.70 E-value=2.1e-11 Score=119.69 Aligned_cols=451 Identities=11% Similarity=0.109 Sum_probs=267.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHH
Q 002549 291 EMTYNTIIHMYGKQGQHDVALQLYRDMKLSGRNPDVVTYTVLIDSLGKANKISEAANVMSEMLDASVKPTL-RTYSALIC 369 (909)
Q Consensus 291 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~ 369 (909)
...|......--..+++..|..+|+..+... ..+...|.-.+.+-.++..+..|..+++..+.. -|-+ ..|...+.
T Consensus 73 ~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~y 149 (677)
T KOG1915|consen 73 MQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIY 149 (677)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHH
Confidence 3344444444445555666666666665543 334445555566666666666666666666553 2222 22333344
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHH
Q 002549 370 GYAKAGNRLEAEKTFYCMRRSGIRPDHLAYSVMLDIFLRFNETNKAMMLYQEMVSNGFTPDQALYEIMIGVLGRENKGEE 449 (909)
Q Consensus 370 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 449 (909)
+=-..|++..|.++|++-.+ ..|+...|.+.|+.-.+...++.|..++++..-. .|+..+|-.....-.++|....
T Consensus 150 mEE~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~ 225 (677)
T KOG1915|consen 150 MEEMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVAL 225 (677)
T ss_pred HHHHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHH
Confidence 44456666777777766655 3567777777777777777777777777776643 5677777666666666777666
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHhcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCC
Q 002549 450 IRKVVRDMKELSGINMQEISSILVKGECYDHAAEILRSAIRNGIELDHEKLLSILSSYNVSGRHLEACELIEFVKQHASE 529 (909)
Q Consensus 450 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 529 (909)
+..+++...+..+..... ...+.+...--.....++.|.-++..++++-|.
T Consensus 226 aR~VyerAie~~~~d~~~-----------------------------e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk 276 (677)
T KOG1915|consen 226 ARSVYERAIEFLGDDEEA-----------------------------EILFVAFAEFEERQKEYERARFIYKYALDHIPK 276 (677)
T ss_pred HHHHHHHHHHHhhhHHHH-----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 666666555422221110 001111111222233344444445544444333
Q ss_pred CC-hhhHHHHHHHHHhcCC---HHHHH-----HHHHHhhccCCcccchhhHHHHHHHHHhcccHHHHHHHHHHHHhCCCC
Q 002549 530 ST-PPLTQAFIIMLCKAQK---LDAAL-----EEYSNAWGFGFFSKSKTMYESLIHSCEYNERFAEASQVFSDMRFYNIE 600 (909)
Q Consensus 530 ~~-~~~~~~l~~~~~~~g~---~~~A~-----~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 600 (909)
.. ..++..+...--+-|+ +++++ --|+..+..+ |.|-.+|--.+..-...|+.+...++|+..+. +++
T Consensus 277 ~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n--p~nYDsWfdylrL~e~~g~~~~Ire~yErAIa-nvp 353 (677)
T KOG1915|consen 277 GRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN--PYNYDSWFDYLRLEESVGDKDRIRETYERAIA-NVP 353 (677)
T ss_pred ccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC--CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHc-cCC
Confidence 22 2233333333223333 23332 2355566555 77888888888888888999999999998875 455
Q ss_pred CCHH--HHHHHH----H-HH---hhcCChhhHHHHHHHHHHcCCCCCC----chHHHHHHHHhhhcCChHHHHHHHHHHH
Q 002549 601 PSED--LYRSMV----V-AY---CKMDFPETAHFIADQAEKKGIPFED----LSIYVDIIDAYGRLKLWQKAESLVGCLR 666 (909)
Q Consensus 601 p~~~--~~~~l~----~-~~---~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 666 (909)
|-.. .|...+ . +| ....+.+.+.++|+..++ +.|-. ..++...+....++.++..|.+++..++
T Consensus 354 p~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~--lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI 431 (677)
T KOG1915|consen 354 PASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD--LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI 431 (677)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh
Confidence 5321 122111 1 22 346678888888888887 44543 3344455555677788888888888877
Q ss_pred hcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCchhhHHHHHHHHHhCCC-CccHH
Q 002549 667 QRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQALIVDGRLNELYVVIQELQDMDF-KISKS 745 (909)
Q Consensus 667 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~ 745 (909)
.. .|-..++...|..=.+.++++.+..++++.++-+|. +..+|......-...|+++.|..+|.-.++... .-...
T Consensus 432 G~--cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe-~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpel 508 (677)
T KOG1915|consen 432 GK--CPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPE-NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPEL 508 (677)
T ss_pred cc--CCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChH-hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHH
Confidence 54 566777777777777888888888888888887777 777777776666677777777777777665542 22234
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHH
Q 002549 746 SILLMLDAFARSGNIFEVKKIYHGMKAAGYFPTMYLYRVMSG 787 (909)
Q Consensus 746 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 787 (909)
.+-+.|+.-...|.+++|..+|+++++.. +-..+|.+.+.
T Consensus 509 lwkaYIdFEi~~~E~ekaR~LYerlL~rt--~h~kvWisFA~ 548 (677)
T KOG1915|consen 509 LWKAYIDFEIEEGEFEKARALYERLLDRT--QHVKVWISFAK 548 (677)
T ss_pred HHHHhhhhhhhcchHHHHHHHHHHHHHhc--ccchHHHhHHH
Confidence 44555555566777777777777777632 33335544443
No 42
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=2.4e-12 Score=126.00 Aligned_cols=194 Identities=14% Similarity=0.097 Sum_probs=118.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhccCCcccchhhHHHHHHHHHhcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcC
Q 002549 538 FIIMLCKAQKLDAALEEYSNAWGFGFFSKSKTMYESLIHSCEYNERFAEASQVFSDMRFYNIEPSEDLYRSMVVAYCKMD 617 (909)
Q Consensus 538 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 617 (909)
++..|.-.++.++|+..|+++++.+ |....+|+.++.-|....+...|++-++..+
T Consensus 336 IaNYYSlr~eHEKAv~YFkRALkLN--p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAv---------------------- 391 (559)
T KOG1155|consen 336 IANYYSLRSEHEKAVMYFKRALKLN--PKYLSAWTLMGHEYVEMKNTHAAIESYRRAV---------------------- 391 (559)
T ss_pred ehhHHHHHHhHHHHHHHHHHHHhcC--cchhHHHHHhhHHHHHhcccHHHHHHHHHHH----------------------
Confidence 4445555666677777777776665 6666666666666665555555555555444
Q ss_pred ChhhHHHHHHHHHHcCCCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHH
Q 002549 618 FPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVF 697 (909)
Q Consensus 618 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 697 (909)
+ +.|.+..+|..++++|.-.+...-|+-.|+++.+. .|.|+.+|.+|+.+|.+.++.++|+..|
T Consensus 392 -------------d--i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~-kPnDsRlw~aLG~CY~kl~~~~eAiKCy 455 (559)
T KOG1155|consen 392 -------------D--INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALEL-KPNDSRLWVALGECYEKLNRLEEAIKCY 455 (559)
T ss_pred -------------h--cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHhccHHHHHHHH
Confidence 3 56666666666666666666666677777766665 5667777777777777777777777777
Q ss_pred HHHHHcCCCCCcccHHHHHHHHHhcCchhhHHHHHHHHHhC----CCCcc-H-HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002549 698 NTMMRDGPSPTVDSINGLLQALIVDGRLNELYVVIQELQDM----DFKIS-K-SSILLMLDAFARSGNIFEVKKIYHGMK 771 (909)
Q Consensus 698 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~-~~~~~l~~~~~~~g~~~~a~~~~~~~~ 771 (909)
.+++..+.. +...+..|+..|-+.++.++|.+.+.+.++. |...+ . ....-|...+.+.+++++|..+.....
T Consensus 456 krai~~~dt-e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 456 KRAILLGDT-EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVL 534 (559)
T ss_pred HHHHhcccc-chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence 777765544 4456666777777777777776666665442 21111 1 111114444555666666655555444
Q ss_pred h
Q 002549 772 A 772 (909)
Q Consensus 772 ~ 772 (909)
.
T Consensus 535 ~ 535 (559)
T KOG1155|consen 535 K 535 (559)
T ss_pred c
Confidence 3
No 43
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=3.8e-12 Score=124.65 Aligned_cols=365 Identities=12% Similarity=0.027 Sum_probs=195.2
Q ss_pred CCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHhcccHHHHHHHHHHHHHcCCCCCHHHH--HHHH
Q 002549 427 FTPDQALYEIMIGVLGRENKGEEIRKVVRDMKELSGINMQEISSILVKGECYDHAAEILRSAIRNGIELDHEKL--LSIL 504 (909)
Q Consensus 427 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~d~~~~--~~l~ 504 (909)
...|...+....-.+.+.|....|...+.......|..+.....+-.-....+.+ .... .+...|...+ --+.
T Consensus 160 ~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~----~~l~-~~l~~~~h~M~~~F~~ 234 (559)
T KOG1155|consen 160 GEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEIL----SILV-VGLPSDMHWMKKFFLK 234 (559)
T ss_pred ccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHH----HHHH-hcCcccchHHHHHHHH
Confidence 3445444444444566777778888877777766666555433221111111111 1111 1111111111 1122
Q ss_pred HHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhccCCcc-cchhhHHHHHHHHHhccc
Q 002549 505 SSYNVSGRHLEACELIEFVKQHASESTPPLTQAFIIMLCKAQKLDAALEEYSNAWGFGFFS-KSKTMYESLIHSCEYNER 583 (909)
Q Consensus 505 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~ 583 (909)
.++......+++..-.......|.+....+-+..+.......+++.|+.+|+.+.+.+... .+..+|+.++-.-....+
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~sk 314 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSK 314 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHH
Confidence 3344444555555555555555555555555555555555666666666666665543111 134444444422211111
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCCchHHHHHHHHhhhcCChHHHHHHHH
Q 002549 584 FAEASQVFSDMRFYNIEPSEDLYRSMVVAYCKMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVG 663 (909)
Q Consensus 584 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 663 (909)
+..+.+-...=-+-.++|...+.+.|.-.++.|+|+.+|+.+++ ++|....+|..++--|...++...|++-|+
T Consensus 315 ----Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALk--LNp~~~~aWTLmGHEyvEmKNt~AAi~sYR 388 (559)
T KOG1155|consen 315 ----LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALK--LNPKYLSAWTLMGHEYVEMKNTHAAIESYR 388 (559)
T ss_pred ----HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHh--cCcchhHHHHHhhHHHHHhcccHHHHHHHH
Confidence 11111111000122345556666666666666777777777666 666666667777777777777777777777
Q ss_pred HHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCchhhHHHHHHHHHhCCCCcc
Q 002549 664 CLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQALIVDGRLNELYVVIQELQDMDFKIS 743 (909)
Q Consensus 664 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 743 (909)
.+++. .|-|-..|..|+.+|.-.+...=|+-.|+++.+..|. |...|..|+.+|.+.++.++|++.|.+....+ ..+
T Consensus 389 rAvdi-~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPn-DsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte 465 (559)
T KOG1155|consen 389 RAVDI-NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPN-DSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTE 465 (559)
T ss_pred HHHhc-CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccc
Confidence 66665 3556666666777776666666677777776665555 66666667777766777777777666666555 234
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----C-CCc-hHHHHHHHHHHHhccCchHHHHHHHHHH
Q 002549 744 KSSILLMLDAFARSGNIFEVKKIYHGMKAA----G-YFP-TMYLYRVMSGLFCKGKRVRDVEAMVSEM 805 (909)
Q Consensus 744 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 805 (909)
...+..+...|.+.++.++|...|++.++. | +.| +......|...+.+.+++++|.......
T Consensus 466 ~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~ 533 (559)
T KOG1155|consen 466 GSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLV 533 (559)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 555666666666666666666666666541 1 222 2333334455555555555555544444
No 44
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.69 E-value=1.5e-09 Score=111.14 Aligned_cols=578 Identities=12% Similarity=0.136 Sum_probs=320.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 002549 187 ITYNTIISACSRESNLEEAMKVYGDLEAH-NCQPDLWTYNAMISVYGRCGLFEKAEQLFKELESKGFFPDAVTYNSLLYA 265 (909)
Q Consensus 187 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~ 265 (909)
..|-..+....++|++..-...|+..+.. .+.-....|...+......|-++-+..++++.++. ++..-.-.|.-
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~ 178 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEY 178 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHH
Confidence 36777788888899999999999887654 22234457888888888888999999999998875 44446777888
Q ss_pred HHHcCCHHHHHHHHHHHHHC------CCCCCHHHHHHHHHHHHhcCCHHHHH---HHHHHHHhcCCCCCH--HHHHHHHH
Q 002549 266 FAREGNVEKVKEISENMLKM------GFGKDEMTYNTIIHMYGKQGQHDVAL---QLYRDMKLSGRNPDV--VTYTVLID 334 (909)
Q Consensus 266 ~~~~g~~~~a~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~A~---~~~~~~~~~~~~~~~--~~~~~li~ 334 (909)
+++.+++++|.+.+..++.. ..+.+...|.-+-+..++.-+.-..+ .+++.+... .+|- ..|++|.+
T Consensus 179 L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAd 256 (835)
T KOG2047|consen 179 LAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLAD 256 (835)
T ss_pred HHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHH
Confidence 88999999998888776532 12445556666666665544332222 233333322 3444 36788888
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhH
Q 002549 335 SLGKANKISEAANVMSEMLDASVKPTLRTYSALICGYAKAGNRLEAEKTFYCMRRSGIRPDHLAYSVMLDIFLRFNETNK 414 (909)
Q Consensus 335 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 414 (909)
-|.+.|.+++|..+|++.... ...+.-|+.+..+|+.-....-+..+= ...+.+..+. ..-+++-
T Consensus 257 YYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me-~a~~~~~n~e------------d~~dl~~ 321 (835)
T KOG2047|consen 257 YYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKME-LADEESGNEE------------DDVDLEL 321 (835)
T ss_pred HHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHh-hhhhcccChh------------hhhhHHH
Confidence 888888888888888887654 235556666666666533222221111 0000111111 1112333
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHH-HHhcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHhcccHHHHHHHHHHHHHcCC
Q 002549 415 AMMLYQEMVSNGFTPDQALYEIMIG-VLGRENKGEEIRKVVRDMKELSGINMQEISSILVKGECYDHAAEILRSAIRNGI 493 (909)
Q Consensus 415 A~~~~~~~~~~~~~~~~~~~~~ll~-~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 493 (909)
...-|+.+.+.+ | .+++ .+++++ ...+.+..+ ..-+..++..+-...|.++++. +
T Consensus 322 ~~a~~e~lm~rr--~------~~lNsVlLRQn-~~nV~eW~k--------------RV~l~e~~~~~~i~tyteAv~~-v 377 (835)
T KOG2047|consen 322 HMARFESLMNRR--P------LLLNSVLLRQN-PHNVEEWHK--------------RVKLYEGNAAEQINTYTEAVKT-V 377 (835)
T ss_pred HHHHHHHHHhcc--c------hHHHHHHHhcC-CccHHHHHh--------------hhhhhcCChHHHHHHHHHHHHc-c
Confidence 344444444331 1 1111 111111 001111110 1111223333333344333322 1
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhccCCcccc---hhh
Q 002549 494 ELDHEKLLSILSSYNVSGRHLEACELIEFVKQHASESTPPLTQAFIIMLCKAQKLDAALEEYSNAWGFGFFSKS---KTM 570 (909)
Q Consensus 494 ~~d~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~ 570 (909)
.|- ..+.....++..+...|-..|+++.|..+|+++.+.+ ++.- ..+
T Consensus 378 dP~-----------------------------ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~-y~~v~dLa~v 427 (835)
T KOG2047|consen 378 DPK-----------------------------KAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVP-YKTVEDLAEV 427 (835)
T ss_pred Ccc-----------------------------cCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCC-ccchHHHHHH
Confidence 110 1122233455566666666777777777777766543 2211 233
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCCchHHHHHHHHhh
Q 002549 571 YESLIHSCEYNERFAEASQVFSDMRFYNIEPSEDLYRSMVVAYCKMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYG 650 (909)
Q Consensus 571 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 650 (909)
|..-...=.++.+++.|+.+.++... .|.... ..+...+.+-.++ ++ .+..+|...++...
T Consensus 428 w~~waemElrh~~~~~Al~lm~~A~~---vP~~~~-----~~~yd~~~pvQ~r-lh----------rSlkiWs~y~DleE 488 (835)
T KOG2047|consen 428 WCAWAEMELRHENFEAALKLMRRATH---VPTNPE-----LEYYDNSEPVQAR-LH----------RSLKIWSMYADLEE 488 (835)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHhhhc---CCCchh-----hhhhcCCCcHHHH-HH----------HhHHHHHHHHHHHH
Confidence 44444444455666666666655542 333222 1112222222111 11 13456677777777
Q ss_pred hcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCc-ccHHHHHHHHH-h--cCchh
Q 002549 651 RLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTV-DSINGLLQALI-V--DGRLN 726 (909)
Q Consensus 651 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~-~--~g~~~ 726 (909)
..|-++....+|+++++..+. .+.+.-..+.-+-.+.-++++.+++++-+...+-|++ ..|+..+.-+. + ..+.+
T Consensus 489 s~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klE 567 (835)
T KOG2047|consen 489 SLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLE 567 (835)
T ss_pred HhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHH
Confidence 778888888888888766333 3333333333344566788899999888887666654 33555544333 2 23568
Q ss_pred hHHHHHHHHHhCCCCccHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc--hHHHHHHHHHHHhccCchHHHHHHH
Q 002549 727 ELYVVIQELQDMDFKISKS--SILLMLDAFARSGNIFEVKKIYHGMKAAGYFP--TMYLYRVMSGLFCKGKRVRDVEAMV 802 (909)
Q Consensus 727 ~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~ 802 (909)
.|..+|++..+ +.+|... .|......-.+-|-...|+.++++... ++.+ -...||..|.--...=-......++
T Consensus 568 raRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~-~v~~a~~l~myni~I~kaae~yGv~~TR~iY 645 (835)
T KOG2047|consen 568 RARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS-AVKEAQRLDMYNIYIKKAAEIYGVPRTREIY 645 (835)
T ss_pred HHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHHhCCcccHHHH
Confidence 88888888887 5555532 233233333455777788888888665 2333 3456676665433332344566778
Q ss_pred HHHHHCCCCCCHHhHH---HHHHHhhccCCHHHHHHHHHHHHHcCCCC--ChhhHHHHHHHHHhcCC
Q 002549 803 SEMKEAGFKPDLSIWN---SMLKLYTGIEDFKKTIQVYQEIQEADLQP--DEDSFNTLIIMYCRDCR 864 (909)
Q Consensus 803 ~~~~~~~~~p~~~~~~---~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~ 864 (909)
+++++ .-||...-. -+...=++.|..+.|..+|...-+. ..| +..-|...-..-.+.|+
T Consensus 646 ekaIe--~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~-~dPr~~~~fW~twk~FEvrHGn 709 (835)
T KOG2047|consen 646 EKAIE--SLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQI-CDPRVTTEFWDTWKEFEVRHGN 709 (835)
T ss_pred HHHHH--hCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhc-CCCcCChHHHHHHHHHHHhcCC
Confidence 88877 456664322 2333446678888888888777663 345 33556666677777777
No 45
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.68 E-value=4.4e-15 Score=152.28 Aligned_cols=270 Identities=13% Similarity=0.130 Sum_probs=161.1
Q ss_pred hhHHHHHHHHHHcCCCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcC--CCCChHhHHHHHHHHHHcCCHHHHHHHH
Q 002549 620 ETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRC--APVDRKVWNALIKAYAASGCYERARAVF 697 (909)
Q Consensus 620 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 697 (909)
++|...|...-. ..++...+...++.+|.+.+++++|+.+|+.+.+.. .-.+..+|...+.-+ .+ +-++.++
T Consensus 336 ~~A~~~~~klp~--h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHL---q~-~v~Ls~L 409 (638)
T KOG1126|consen 336 REALNLFEKLPS--HHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHL---QD-EVALSYL 409 (638)
T ss_pred HHHHHHHHhhHH--hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHH---Hh-hHHHHHH
Confidence 344444444222 233444555666666666666666666666655431 011344444333221 11 1122222
Q ss_pred -HHHHHcCCCCCcccHHHHHHHHHhcCchhhHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 002549 698 -NTMMRDGPSPTVDSINGLLQALIVDGRLNELYVVIQELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYHGMKAAGYF 776 (909)
Q Consensus 698 -~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 776 (909)
+.+++.++. ++.+|-.++++|.-+++.+.|++.|++..+.+ +-...+|+.+..-+....++|.|...|+..+.
T Consensus 410 aq~Li~~~~~-sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~---- 483 (638)
T KOG1126|consen 410 AQDLIDTDPN-SPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALG---- 483 (638)
T ss_pred HHHHHhhCCC-CcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhc----
Confidence 222333333 55666666666666666666666666666554 12345556555666666677777777777664
Q ss_pred chHHHHHH---HHHHHhccCchHHHHHHHHHHHHCCCCCC-HHhHHHHHHHhhccCCHHHHHHHHHHHHHcCCCC-Chhh
Q 002549 777 PTMYLYRV---MSGLFCKGKRVRDVEAMVSEMKEAGFKPD-LSIWNSMLKLYTGIEDFKKTIQVYQEIQEADLQP-DEDS 851 (909)
Q Consensus 777 p~~~~~~~---l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~ 851 (909)
.++.+||+ ++..|.|.++++.|+-.|+++.+ +.|. .+....++..+.+.|+.++|+++++++.- ++| |+.+
T Consensus 484 ~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~--INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~--ld~kn~l~ 559 (638)
T KOG1126|consen 484 VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE--INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIH--LDPKNPLC 559 (638)
T ss_pred CCchhhHHHHhhhhheeccchhhHHHHHHHhhhc--CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHh--cCCCCchh
Confidence 44444443 44567777777777777777776 5554 35666666677777777777777777777 677 5566
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHcCCCCC-hhhHHHHHHHHhccCCHHHHHHhh
Q 002549 852 FNTLIIMYCRDCRPEEGLSLMHEMRKLGLEPK-LDTYKSLISAFGKQQQLEQAEELL 907 (909)
Q Consensus 852 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~ 907 (909)
-...+..+...+++++|+..++++.+ +.|+ ...+..++..|.+.|+.+.|+.-|
T Consensus 560 ~~~~~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~k~~~~~~~Al~~f 614 (638)
T KOG1126|consen 560 KYHRASILFSLGRYVEALQELEELKE--LVPQESSVFALLGKIYKRLGNTDLALLHF 614 (638)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHHccchHHHHhh
Confidence 66777777777777777777777763 3554 556667777777777777776644
No 46
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.68 E-value=9e-10 Score=117.90 Aligned_cols=612 Identities=15% Similarity=0.134 Sum_probs=372.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH-----HHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 002549 189 YNTIISACSRESNLEEAMKVYGDLEAHNCQPDLWTYNA-----MISVYGRCGLFEKAEQLFKELESKGFFPDAVTYNSLL 263 (909)
Q Consensus 189 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-----li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll 263 (909)
+-.+.+.|.+.|-+..|++.|.++... .. +++.+. .+-.|...-.++.+.+.++.|...++..|..+...+.
T Consensus 609 ra~IAqLCEKAGL~qraLehytDl~DI--KR-~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQva 685 (1666)
T KOG0985|consen 609 RAEIAQLCEKAGLLQRALEHYTDLYDI--KR-VVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVA 685 (1666)
T ss_pred HHHHHHHHHhcchHHHHHHhcccHHHH--HH-HHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 566778899999999999988876542 11 111111 2334556668899999999999998888888888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHC-----------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH------------hc
Q 002549 264 YAFAREGNVEKVKEISENMLKM-----------GFGKDEMTYNTIIHMYGKQGQHDVALQLYRDMK------------LS 320 (909)
Q Consensus 264 ~~~~~~g~~~~a~~~~~~~~~~-----------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~------------~~ 320 (909)
.-|+..--.+...++|+..... ++..|+.+.-..|.+.|+.|++.+..++.++-. +.
T Consensus 686 tky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeA 765 (1666)
T KOG0985|consen 686 TKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEA 765 (1666)
T ss_pred HHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhc
Confidence 8888776677777777765543 345677777788999999999988887755421 11
Q ss_pred C---------------CCCCHHHH------HHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-----------CHHHHHHHH
Q 002549 321 G---------------RNPDVVTY------TVLIDSLGKANKISEAANVMSEMLDASVKP-----------TLRTYSALI 368 (909)
Q Consensus 321 ~---------------~~~~~~~~------~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-----------~~~~~~~l~ 368 (909)
. ..+|.+.| ...|..|.+.=+....-.+...+++-.+.- ......-|.
T Consensus 766 kL~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~~deLv 845 (1666)
T KOG0985|consen 766 KLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDCSEDFIKNLILSVRGQFPVDELV 845 (1666)
T ss_pred cccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCCcHHHHHHHHHHHhccCChHHHH
Confidence 0 01122221 112333333222222111111111111100 111124456
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCH-
Q 002549 369 CGYAKAGNRLEAEKTFYCMRRSGIRPDHLAYSVMLDIFLRFNETNKAMMLYQEMVSNGFTPDQALYEIMIGVLGRENKG- 447 (909)
Q Consensus 369 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~- 447 (909)
.-.-+.+++.--...++.....|. .|..++|+|...|..++.-.+- .++.+-.-| +..+.-||...+.
T Consensus 846 ~EvEkRNRLklLlp~LE~~i~eG~-~d~a~hnAlaKIyIDSNNnPE~------fLkeN~yYD----s~vVGkYCEKRDP~ 914 (1666)
T KOG0985|consen 846 EEVEKRNRLKLLLPWLESLIQEGS-QDPATHNALAKIYIDSNNNPER------FLKENPYYD----SKVVGKYCEKRDPH 914 (1666)
T ss_pred HHHHhhhhHHHHHHHHHHHHhccC-cchHHHhhhhheeecCCCChHH------hcccCCcch----hhHHhhhhcccCCc
Confidence 677788888888888888888886 6889999999888766543221 111111111 1112223322221
Q ss_pred ------------HHHHHHHH------HHHH--hcCCChHHHHHHHHhcccHHHHHHHHHHHHHcCCC--CCHHHHHHHHH
Q 002549 448 ------------EEIRKVVR------DMKE--LSGINMQEISSILVKGECYDHAAEILRSAIRNGIE--LDHEKLLSILS 505 (909)
Q Consensus 448 ------------~~a~~~~~------~~~~--~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~--~d~~~~~~l~~ 505 (909)
.+...+.. ...+ ....+++-+...+....- --.++.++.+..+++ .|+...+....
T Consensus 915 lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~--~rRqLiDqVv~tal~E~~dPe~vS~tVk 992 (1666)
T KOG0985|consen 915 LACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENP--YRRQLIDQVVQTALPETQDPEEVSVTVK 992 (1666)
T ss_pred eEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccCh--HHHHHHHHHHHhcCCccCChHHHHHHHH
Confidence 11111110 0000 011122222222221111 122445555554433 46666777788
Q ss_pred HHhccCCHHHHHHHHHHHHhcCC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHhhccCCcccchhhHHHHHHHHHhcccH
Q 002549 506 SYNVSGRHLEACELIEFVKQHAS-ESTPPLTQAFIIMLCKAQKLDAALEEYSNAWGFGFFSKSKTMYESLIHSCEYNERF 584 (909)
Q Consensus 506 ~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 584 (909)
++...+-..+-+++++.+.-.+. -+...-...++..-+-..+.....+..+++-..+ -..+...+..++-+
T Consensus 993 AfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyD--------a~~ia~iai~~~Ly 1064 (1666)
T KOG0985|consen 993 AFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYD--------APDIAEIAIENQLY 1064 (1666)
T ss_pred HHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCC--------chhHHHHHhhhhHH
Confidence 88888999999999988764332 2222222333333333344455556666654432 12344556677888
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCCchHHHHHHHHhhhcCChHHHHHHHHH
Q 002549 585 AEASQVFSDMRFYNIEPSEDLYRSMVVAYCKMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGC 664 (909)
Q Consensus 585 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 664 (909)
+||..+|+..- .+......++. ..+..++|.++.++. +.+.+|..++.+....|...+|++-|-+
T Consensus 1065 EEAF~ifkkf~-----~n~~A~~VLie---~i~~ldRA~efAe~~-------n~p~vWsqlakAQL~~~~v~dAieSyik 1129 (1666)
T KOG0985|consen 1065 EEAFAIFKKFD-----MNVSAIQVLIE---NIGSLDRAYEFAERC-------NEPAVWSQLAKAQLQGGLVKDAIESYIK 1129 (1666)
T ss_pred HHHHHHHHHhc-----ccHHHHHHHHH---HhhhHHHHHHHHHhh-------CChHHHHHHHHHHHhcCchHHHHHHHHh
Confidence 99999998753 34444444443 345667777665442 4578999999999999999999888765
Q ss_pred HHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCchhhHHHHHHHHHhCCCCccH
Q 002549 665 LRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQALIVDGRLNELYVVIQELQDMDFKISK 744 (909)
Q Consensus 665 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 744 (909)
+ .|+..|...+....+.|+|++-.+++..+.++..+|.+. ..|+.+|++.++..+-.+++. -|+.
T Consensus 1130 a------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~-------gpN~ 1194 (1666)
T KOG0985|consen 1130 A------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIA-------GPNV 1194 (1666)
T ss_pred c------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhc-------CCCc
Confidence 3 378889999999999999999999999999887776654 468889999998877555442 4778
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccCchHHHHHHHHHHHHCCCCCCHHhHHHHHHHh
Q 002549 745 SSILLMLDAFARSGNIFEVKKIYHGMKAAGYFPTMYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDLSIWNSMLKLY 824 (909)
Q Consensus 745 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 824 (909)
.....+.+-|...|.++.|.-+|... ..|..|...+...|++..|...-+++ .+..+|--...+|
T Consensus 1195 A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaC 1259 (1666)
T KOG0985|consen 1195 ANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFAC 1259 (1666)
T ss_pred hhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHH
Confidence 88888999999999999998888654 35677777788888888777766554 2445677776677
Q ss_pred hccCCHHHHHHHHHHHHHcCCCC--ChhhHHHHHHHHHhcCChhhHHHHHHHHH
Q 002549 825 TGIEDFKKTIQVYQEIQEADLQP--DEDSFNTLIIMYCRDCRPEEGLSLMHEMR 876 (909)
Q Consensus 825 ~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 876 (909)
...+.+.-| .-.|++- ...-+-.++.-|-.-|-++|-+.+++...
T Consensus 1260 vd~~EFrlA-------QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~L 1306 (1666)
T KOG0985|consen 1260 VDKEEFRLA-------QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGL 1306 (1666)
T ss_pred hchhhhhHH-------HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhh
Confidence 665544333 1122332 22334445555555555555555555444
No 47
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=2.8e-12 Score=129.06 Aligned_cols=215 Identities=12% Similarity=0.033 Sum_probs=121.4
Q ss_pred CCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHH
Q 002549 634 IPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSIN 713 (909)
Q Consensus 634 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 713 (909)
..|+.+..|..++--|...|++.+|++.|.+.... .+.-...|-.++..|.-.|..++|...+..+-+.-+. ....+-
T Consensus 307 ~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~l-D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G-~hlP~L 384 (611)
T KOG1173|consen 307 LYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTL-DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPG-CHLPSL 384 (611)
T ss_pred hCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhc-CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccC-CcchHH
Confidence 34444444444444444445555555555444433 2222344444555555555555555555554444332 222233
Q ss_pred HHHHHHHhcCchhhHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--cCCC----chHHHHHHHHH
Q 002549 714 GLLQALIVDGRLNELYVVIQELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYHGMKA--AGYF----PTMYLYRVMSG 787 (909)
Q Consensus 714 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~----p~~~~~~~l~~ 787 (909)
.++--|.+.++..-|.+.|.+..... +.|+...+-+.-+....+.+.+|..+|+..+. ..+. --..+++.|+.
T Consensus 385 Ylgmey~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH 463 (611)
T KOG1173|consen 385 YLGMEYMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGH 463 (611)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHH
Confidence 33334444455555555555444332 22333444444444445556666666665552 0111 13346788888
Q ss_pred HHhccCchHHHHHHHHHHHHCCCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHcCCCCChhhHHH
Q 002549 788 LFCKGKRVRDVEAMVSEMKEAGFKPDLSIWNSMLKLYTGIEDFKKTIQVYQEIQEADLQPDEDSFNT 854 (909)
Q Consensus 788 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 854 (909)
.|.+++++++|+..+++.+.. .+-|..++.+++-.|...|+++.|++.|.+.+- ++|++.....
T Consensus 464 ~~Rkl~~~~eAI~~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~ 527 (611)
T KOG1173|consen 464 AYRKLNKYEEAIDYYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISE 527 (611)
T ss_pred HHHHHhhHHHHHHHHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHH
Confidence 889999999999999998873 233567888888888888999999999999988 8887744443
No 48
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=2.4e-12 Score=129.53 Aligned_cols=284 Identities=14% Similarity=0.098 Sum_probs=227.1
Q ss_pred CCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHH
Q 002549 599 IEPSEDLYRSMVVAYCKMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWN 678 (909)
Q Consensus 599 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 678 (909)
..-+......-...|...+++.+...+.+..++ ..|-+...+-.-+..+.+.|+..+-..+=-++.+. .|..+..|.
T Consensus 240 l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle--~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~ 316 (611)
T KOG1173|consen 240 LAENLDLLAEKADRLYYGCRFKECLKITEELLE--KDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWF 316 (611)
T ss_pred hhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHh--hCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchh
Confidence 344566666777778888899999999988887 66667677766666888888888777777777776 788899999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCchhhHHHHHHHHHhCCCCccHHHHHHHHHHHHhcC
Q 002549 679 ALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQALIVDGRLNELYVVIQELQDMDFKISKSSILLMLDAFARSG 758 (909)
Q Consensus 679 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 758 (909)
+++--|...|++.+|++.|.+....++. =...|-..++.|+-.|..+.|...+..+.+.=.. ...-+.-+.--|.+.+
T Consensus 317 aVg~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G-~hlP~LYlgmey~~t~ 394 (611)
T KOG1173|consen 317 AVGCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPG-CHLPSLYLGMEYMRTN 394 (611)
T ss_pred hHHHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccC-CcchHHHHHHHHHHhc
Confidence 9999999999999999999999887665 3467999999999999999999998877654211 1111122444677899
Q ss_pred CHHHHHHHHHHHHhcCCCc-hHHHHHHHHHHHhccCchHHHHHHHHHHHHC--CCCCC----HHhHHHHHHHhhccCCHH
Q 002549 759 NIFEVKKIYHGMKAAGYFP-TMYLYRVMSGLFCKGKRVRDVEAMVSEMKEA--GFKPD----LSIWNSMLKLYTGIEDFK 831 (909)
Q Consensus 759 ~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~----~~~~~~l~~~~~~~g~~~ 831 (909)
+++.|.++|.+... +.| ++.+.+-++-.....+.+.+|..+|+..+.. ...+. ..+++.|+.+|++.+.++
T Consensus 395 n~kLAe~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~ 472 (611)
T KOG1173|consen 395 NLKLAEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYE 472 (611)
T ss_pred cHHHHHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHH
Confidence 99999999999886 445 6778888877777889999999999998731 11111 246899999999999999
Q ss_pred HHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHH
Q 002549 832 KTIQVYQEIQEADLQP-DEDSFNTLIIMYCRDCRPEEGLSLMHEMRKLGLEPKLDTYKSLISA 893 (909)
Q Consensus 832 ~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 893 (909)
+|+..+++.+. +.| +..++..++-+|...|+++.|.+.|.+.. .+.|+......++..
T Consensus 473 eAI~~~q~aL~--l~~k~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~~~lL~~ 531 (611)
T KOG1173|consen 473 EAIDYYQKALL--LSPKDASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFISELLKL 531 (611)
T ss_pred HHHHHHHHHHH--cCCCchhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHHHHHHHH
Confidence 99999999999 888 56899999999999999999999999998 789987655555543
No 49
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.66 E-value=7.5e-10 Score=116.16 Aligned_cols=476 Identities=12% Similarity=0.069 Sum_probs=313.9
Q ss_pred cCCHhHHHHHHHHHHHCCCCCCHHHHHHHHH---HHhcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHhcccHHHHHH--
Q 002549 409 FNETNKAMMLYQEMVSNGFTPDQALYEIMIG---VLGRENKGEEIRKVVRDMKELSGINMQEISSILVKGECYDHAAE-- 483 (909)
Q Consensus 409 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~---~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~-- 483 (909)
.+..+++..-+......+..-+..++..+.. .|...++.+++ .++.-+.+ .++.....+++..
T Consensus 240 ~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~-~Lllli~e-----------s~i~Re~~~d~ilsl 307 (799)
T KOG4162|consen 240 LSGPKEAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQEEV-ILLLLIEE-----------SLIPRENIEDAILSL 307 (799)
T ss_pred CCCchHHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHHHH-HHHHHHHh-----------hccccccHHHHHHHH
Confidence 4555666666666666666656555554443 34456666665 22222221 1222222222222
Q ss_pred --HHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhcc
Q 002549 484 --ILRSAIRNGIELDHEKLLSILSSYNVSGRHLEACELIEFVKQHASESTPPLTQAFIIMLCKAQKLDAALEEYSNAWGF 561 (909)
Q Consensus 484 --~~~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 561 (909)
.++++....+.-|+..|..+.-+....|+++.+.+.|++...... .....+..+...|...|.-..|+.+.+.....
T Consensus 308 m~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~-~~~e~w~~~als~saag~~s~Av~ll~~~~~~ 386 (799)
T KOG4162|consen 308 MLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSF-GEHERWYQLALSYSAAGSDSKAVNLLRESLKK 386 (799)
T ss_pred HHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh-hhHHHHHHHHHHHHHhccchHHHHHHHhhccc
Confidence 223333334556778888888888999999999999998876433 34667888888899999999999999988766
Q ss_pred CCcccchhhHHHHHHHHHh-cccHHHHHHHHHHHHhC--CC--CCCHHHHHHHHHHHhhc----CC-------hhhHHHH
Q 002549 562 GFFSKSKTMYESLIHSCEY-NERFAEASQVFSDMRFY--NI--EPSEDLYRSMVVAYCKM----DF-------PETAHFI 625 (909)
Q Consensus 562 ~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~--~~--~p~~~~~~~l~~~~~~~----~~-------~~~a~~~ 625 (909)
..-|+++..+...-..|.. .+..++++++-.+.+.. +. ...+..+..+.-+|... .. ..++++.
T Consensus 387 ~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqa 466 (799)
T KOG4162|consen 387 SEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQA 466 (799)
T ss_pred ccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHH
Confidence 4335555555555555554 57888888887777651 11 11223333333333221 11 3467778
Q ss_pred HHHHHHcCCCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 002549 626 ADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGP 705 (909)
Q Consensus 626 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 705 (909)
++++.+ ++|.++.+...++--|...++++.|....++.++.+...+...|..|+.++..++++..|+.+.+..+..-+
T Consensus 467 le~av~--~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~ 544 (799)
T KOG4162|consen 467 LEEAVQ--FDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFG 544 (799)
T ss_pred HHHHHh--cCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhh
Confidence 888877 789999999999999999999999999999999887778999999999999999999999999999988644
Q ss_pred CCCcccHHHHHHHHHhcCchhhHHHHHHHHHhC---------------------C-------CCccHHHHHHHHHHHHhc
Q 002549 706 SPTVDSINGLLQALIVDGRLNELYVVIQELQDM---------------------D-------FKISKSSILLMLDAFARS 757 (909)
Q Consensus 706 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------------------~-------~~~~~~~~~~l~~~~~~~ 757 (909)
. |...-..-++.-...++.++++....++... | ......++..+.......
T Consensus 545 ~-N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~ 623 (799)
T KOG4162|consen 545 D-NHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQ 623 (799)
T ss_pred h-hhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhh
Confidence 4 3332223333334456666666555444311 0 000011221111111100
Q ss_pred CCHHHHHHHHHHHHhcCCCc--h------HHHHHHHHHHHhccCchHHHHHHHHHHHHCCCCC-CHHhHHHHHHHhhccC
Q 002549 758 GNIFEVKKIYHGMKAAGYFP--T------MYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKP-DLSIWNSMLKLYTGIE 828 (909)
Q Consensus 758 g~~~~a~~~~~~~~~~~~~p--~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g 828 (909)
+..-..... +......| + ...|....+.+.+.+..++|...+.++.. +.| ....|...+..+-..|
T Consensus 624 ~~~~~se~~---Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~ 698 (799)
T KOG4162|consen 624 LKSAGSELK---LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKG 698 (799)
T ss_pred hhhcccccc---cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHH
Confidence 000000000 11111112 1 23556667788899999999988888876 334 4466777777888889
Q ss_pred CHHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCChhhHHH--HHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHH
Q 002549 829 DFKKTIQVYQEIQEADLQPDE-DSFNTLIIMYCRDCRPEEGLS--LMHEMRKLGLEPKLDTYKSLISAFGKQQQLEQAEE 905 (909)
Q Consensus 829 ~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 905 (909)
+.++|.+.|..++. ++|+. .....++.++.+.|+..-|.+ ++..+.+.+ .-++..|-.++..+.+.|+.+.|-+
T Consensus 699 ~~~EA~~af~~Al~--ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aae 775 (799)
T KOG4162|consen 699 QLEEAKEAFLVALA--LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAE 775 (799)
T ss_pred hhHHHHHHHHHHHh--cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHH
Confidence 99999999999999 99965 788899999999999888888 999988552 3358899999999999999999987
Q ss_pred hhc
Q 002549 906 LLK 908 (909)
Q Consensus 906 ~~~ 908 (909)
-|+
T Consensus 776 cf~ 778 (799)
T KOG4162|consen 776 CFQ 778 (799)
T ss_pred HHH
Confidence 664
No 50
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.66 E-value=6.2e-16 Score=156.59 Aligned_cols=257 Identities=14% Similarity=0.139 Sum_probs=59.0
Q ss_pred HHHHhhcCChhhHHHHHHHHHHcCCCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCC
Q 002549 610 VVAYCKMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGC 689 (909)
Q Consensus 610 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 689 (909)
...+...|++++|..+++.......+|++...+..++......+++++|...++++.+. .+.++..+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~-~~~~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLAS-DKANPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccc-ccccc
Confidence 44455555555555555443332223444555555555555555555555555555443 12233344444443 34455
Q ss_pred HHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCchhhHHHHHHHHHhCC-CCccHHHHHHHHHHHHhcCCHHHHHHHHH
Q 002549 690 YERARAVFNTMMRDGPSPTVDSINGLLQALIVDGRLNELYVVIQELQDMD-FKISKSSILLMLDAFARSGNIFEVKKIYH 768 (909)
Q Consensus 690 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 768 (909)
+++|.++++...+.. ++...+...+..+...++++++..+++++.... .+.+...+..+...+.+.|+.++|.+.++
T Consensus 93 ~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 93 PEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 555555555544432 222334444444445555555555555443321 12233344444444444555555555555
Q ss_pred HHHhcCCCc-hHHHHHHHHHHHhccCchHHHHHHHHHHHHCCCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHcCCCC
Q 002549 769 GMKAAGYFP-TMYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDLSIWNSMLKLYTGIEDFKKTIQVYQEIQEADLQP 847 (909)
Q Consensus 769 ~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 847 (909)
+.++.. | +....+.++..+...|+.+++.++++...+.. +.|...+..++.+|...|+.++|+..+++..+ .+|
T Consensus 171 ~al~~~--P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~--~~p 245 (280)
T PF13429_consen 171 KALELD--PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALK--LNP 245 (280)
T ss_dssp HHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHH--HST
T ss_pred HHHHcC--CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccc--ccc
Confidence 544422 3 23444444444444455444444444444321 22333344444444444555555555555444 344
Q ss_pred -ChhhHHHHHHHHHhcCChhhHHHHHHHH
Q 002549 848 -DEDSFNTLIIMYCRDCRPEEGLSLMHEM 875 (909)
Q Consensus 848 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 875 (909)
|+....+++.++...|+.++|.++++++
T Consensus 246 ~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 246 DDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp T-HHHHHHHHHHHT---------------
T ss_pred ccccccccccccccccccccccccccccc
Confidence 2344444445555555555555444443
No 51
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.66 E-value=3.4e-12 Score=125.82 Aligned_cols=431 Identities=11% Similarity=0.068 Sum_probs=217.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHH
Q 002549 328 TYTVLIDSLGKANKISEAANVMSEMLDASVKPT-LRTYSALICGYAKAGNRLEAEKTFYCMRRSGIRPD-HLAYSVMLDI 405 (909)
Q Consensus 328 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~ 405 (909)
.+-...+-|.++|.+++|++.+...++. .|+ .+.|.....+|...|+|+++.+--.+.++ +.|+ +..+..-.++
T Consensus 117 ~lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALE--l~P~Y~KAl~RRA~A 192 (606)
T KOG0547|consen 117 ALKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALE--LNPDYVKALLRRASA 192 (606)
T ss_pred HHHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhh--cCcHHHHHHHHHHHH
Confidence 4555666778888888888888888875 466 67777888888888888888877777666 3455 2344444555
Q ss_pred HHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHhcccHHHHHHHH
Q 002549 406 FLRFNETNKAMMLYQEMVSNGFTPDQALYEIMIGVLGRENKGEEIRKVVRDMKELSGINMQEISSILVKGECYDHAAEIL 485 (909)
Q Consensus 406 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 485 (909)
+-..|++++|+.= .|..+++..+....-...+.++++.. |....
T Consensus 193 ~E~lg~~~eal~D-------------~tv~ci~~~F~n~s~~~~~eR~Lkk~-----------------------a~~ka 236 (606)
T KOG0547|consen 193 HEQLGKFDEALFD-------------VTVLCILEGFQNASIEPMAERVLKKQ-----------------------AMKKA 236 (606)
T ss_pred HHhhccHHHHHHh-------------hhHHHHhhhcccchhHHHHHHHHHHH-----------------------HHHHH
Confidence 5566666655321 22233333333332223333333221 11111
Q ss_pred HHHHH-c--CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHh-cCCHHHHHHHHHHhhcc
Q 002549 486 RSAIR-N--GIELDHEKLLSILSSYNVSGRHLEACELIEFVKQHASESTPPLTQAFIIMLCK-AQKLDAALEEYSNAWGF 561 (909)
Q Consensus 486 ~~~~~-~--~~~~d~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~ 561 (909)
++-.+ . .+-|....+.+....+...- .......+...+......+-..+.. ...+..|...+.+....
T Consensus 237 ~e~~k~nr~p~lPS~~fi~syf~sF~~~~--------~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~ 308 (606)
T KOG0547|consen 237 KEKLKENRPPVLPSATFIASYFGSFHADP--------KPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLG 308 (606)
T ss_pred HHhhcccCCCCCCcHHHHHHHHhhccccc--------cccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhh
Confidence 11111 1 11222222222222111000 0000000011111111111111111 11233333333222111
Q ss_pred CCcccc-----------hhhHHHHHHHHHhcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHH
Q 002549 562 GFFSKS-----------KTMYESLIHSCEYNERFAEASQVFSDMRFYNIEPSEDLYRSMVVAYCKMDFPETAHFIADQAE 630 (909)
Q Consensus 562 ~~~~~~-----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 630 (909)
....++ ..+...-..-+.-.|+.-.|..-|+..+.....++.. |..+...|....+.++-...|+.+.
T Consensus 309 ~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~l-yI~~a~~y~d~~~~~~~~~~F~~A~ 387 (606)
T KOG0547|consen 309 SESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSL-YIKRAAAYADENQSEKMWKDFNKAE 387 (606)
T ss_pred hhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchH-HHHHHHHHhhhhccHHHHHHHHHHH
Confidence 000000 1111111122233466666777777666544333322 5555556666666777777777666
Q ss_pred HcCCCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcc
Q 002549 631 KKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVD 710 (909)
Q Consensus 631 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 710 (909)
. ++|.++.+|..-+.++.-.+++++|..-|++.+.. .|.+...|-.+.-+..++++++++...|+...++.|+ .+.
T Consensus 388 ~--ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L-~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~-~~E 463 (606)
T KOG0547|consen 388 D--LDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISL-DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPN-CPE 463 (606)
T ss_pred h--cCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhc-ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-Cch
Confidence 6 66777777777777777777777777777776665 3445555555655556666777777777777666655 555
Q ss_pred cHHHHHHHHHhcCchhhHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHh
Q 002549 711 SINGLLQALIVDGRLNELYVVIQELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYHGMKAAGYFPTMYLYRVMSGLFC 790 (909)
Q Consensus 711 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 790 (909)
.|+....++..++++++|.+.|+..++...+.+.... .+.+.+-..++-.-.
T Consensus 464 vy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v----------------------------~~~plV~Ka~l~~qw 515 (606)
T KOG0547|consen 464 VYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIV----------------------------NAAPLVHKALLVLQW 515 (606)
T ss_pred HHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccc----------------------------cchhhhhhhHhhhch
Confidence 5666666666666666666666665544322111000 111111111211112
Q ss_pred ccCchHHHHHHHHHHHHCCCCCCH-HhHHHHHHHhhccCCHHHHHHHHHHHHH
Q 002549 791 KGKRVRDVEAMVSEMKEAGFKPDL-SIWNSMLKLYTGIEDFKKTIQVYQEIQE 842 (909)
Q Consensus 791 ~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 842 (909)
+ ++++.|+++++++.+ +.|.. ..+.+|...-.++|+.++|+++|++...
T Consensus 516 k-~d~~~a~~Ll~KA~e--~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 516 K-EDINQAENLLRKAIE--LDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred h-hhHHHHHHHHHHHHc--cCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 2 566667777777665 34433 5666666666677777777777777655
No 52
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.65 E-value=1.3e-11 Score=116.52 Aligned_cols=220 Identities=12% Similarity=0.089 Sum_probs=134.9
Q ss_pred HHHHHHHHHhhccCCcccchhhHHHHHHHHHhcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-----hhcCChhhHH
Q 002549 549 DAALEEYSNAWGFGFFSKSKTMYESLIHSCEYNERFAEASQVFSDMRFYNIEPSEDLYRSMVVAY-----CKMDFPETAH 623 (909)
Q Consensus 549 ~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~-----~~~~~~~~a~ 623 (909)
+.|++++-.+.+ .-+++...|+-.|.++++..+|..+.+++.- ..|-......++.+- .......-|.
T Consensus 271 EgALqVLP~L~~-----~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlKiAq 343 (557)
T KOG3785|consen 271 EGALQVLPSLMK-----HIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHLKIAQ 343 (557)
T ss_pred ccHHHhchHHHh-----hChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHHHHH
Confidence 445555544332 2344555666667777777777777666531 223333333333221 1112244566
Q ss_pred HHHHHHHHcCCCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 002549 624 FIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRD 703 (909)
Q Consensus 624 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 703 (909)
+.|...-..+..-+.+.-...++..+.-..++++.+..+..+... +..|...-..++.+++..|++.+|.++|-++..-
T Consensus 344 qffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~ 422 (557)
T KOG3785|consen 344 QFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY-FTNDDDFNLNLAQAKLATGNYVEAEELFIRISGP 422 (557)
T ss_pred HHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhhhHHHHHHHHhcChHHHHHHHhhhcCh
Confidence 666665556666677777777888888888888888888887766 4444444445788888899999999999887543
Q ss_pred CCCCCcccHH-HHHHHHHhcCchhhHHHHHHHHHhCCCCccHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHH
Q 002549 704 GPSPTVDSIN-GLLQALIVDGRLNELYVVIQELQDMDFKISKS-SILLMLDAFARSGNIFEVKKIYHGMKAAGYFPTMYL 781 (909)
Q Consensus 704 ~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~ 781 (909)
..+ |..+|. .|.++|.+.++++-|..++-++. .+.+.. .+..+.+.|.+.+.+--|.+.|+.+... .|+++.
T Consensus 423 ~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~---t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l--DP~pEn 496 (557)
T KOG3785|consen 423 EIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTN---TPSERFSLLQLIANDCYKANEFYYAAKAFDELEIL--DPTPEN 496 (557)
T ss_pred hhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcC---CchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc--CCCccc
Confidence 333 444554 45578888888888877665533 222222 3334556677888777777777777663 366665
Q ss_pred H
Q 002549 782 Y 782 (909)
Q Consensus 782 ~ 782 (909)
|
T Consensus 497 W 497 (557)
T KOG3785|consen 497 W 497 (557)
T ss_pred c
Confidence 5
No 53
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.65 E-value=6.3e-16 Score=156.53 Aligned_cols=256 Identities=16% Similarity=0.214 Sum_probs=114.3
Q ss_pred HHHHHhhhcCChHHHHHHHHHHHhcC-CCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhc
Q 002549 644 DIIDAYGRLKLWQKAESLVGCLRQRC-APVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQALIVD 722 (909)
Q Consensus 644 ~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 722 (909)
.++.++...|++++|.+++++..... .+.++..|..++..+...++++.|...+++++..++. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 56889999999999999997765543 3567788888888888899999999999999988766 66677777777 799
Q ss_pred CchhhHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCchHHHHHHHHHHHhccCchHHHHHH
Q 002549 723 GRLNELYVVIQELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYHGMKAA-GYFPTMYLYRVMSGLFCKGKRVRDVEAM 801 (909)
Q Consensus 723 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 801 (909)
+++++|.+++...-+.. +++..+..++..+...|+++++..+++.+... ..+++...|..++..+.+.|+.++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999998765543 45566777888999999999999999998763 2346788899999999999999999999
Q ss_pred HHHHHHCCCCCC-HHhHHHHHHHhhccCCHHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCChhhHHHHHHHHHHcC
Q 002549 802 VSEMKEAGFKPD-LSIWNSMLKLYTGIEDFKKTIQVYQEIQEADLQP-DEDSFNTLIIMYCRDCRPEEGLSLMHEMRKLG 879 (909)
Q Consensus 802 ~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 879 (909)
++++++ ..|+ ......++..+...|+.+++.++++...+ ..| |+..+..++.+|...|++++|+.++++..+.
T Consensus 169 ~~~al~--~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~--~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~- 243 (280)
T PF13429_consen 169 YRKALE--LDPDDPDARNALAWLLIDMGDYDEAREALKRLLK--AAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKL- 243 (280)
T ss_dssp HHHHHH--H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHH--H-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH-
T ss_pred HHHHHH--cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHH--HCcCHHHHHHHHHHHhccccccccccccccccccc-
Confidence 999998 5675 57788999999999999999999999988 335 5577789999999999999999999999864
Q ss_pred CCCChhhHHHHHHHHhccCCHHHHHHhhc
Q 002549 880 LEPKLDTYKSLISAFGKQQQLEQAEELLK 908 (909)
Q Consensus 880 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 908 (909)
.+.|+....++++++...|+.++|.++..
T Consensus 244 ~p~d~~~~~~~a~~l~~~g~~~~A~~~~~ 272 (280)
T PF13429_consen 244 NPDDPLWLLAYADALEQAGRKDEALRLRR 272 (280)
T ss_dssp STT-HHHHHHHHHHHT-------------
T ss_pred ccccccccccccccccccccccccccccc
Confidence 24478888999999999999999998764
No 54
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.64 E-value=9.5e-14 Score=142.66 Aligned_cols=278 Identities=13% Similarity=0.109 Sum_probs=159.8
Q ss_pred CHHHHHHHHHHhhccCCcccchhhHHHHHHHHHhcccHHHHHHHHHHHHhCCCCC----CHHHHHHHHHHHhhcCChhhH
Q 002549 547 KLDAALEEYSNAWGFGFFSKSKTMYESLIHSCEYNERFAEASQVFSDMRFYNIEP----SEDLYRSMVVAYCKMDFPETA 622 (909)
Q Consensus 547 ~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p----~~~~~~~l~~~~~~~~~~~~a 622 (909)
+..+|+..|++.... ++........+..+|...+++++|..+|+.+++. .| +.++|.+.+--+.+ +-+
T Consensus 334 ~~~~A~~~~~klp~h--~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~--~p~rv~~meiyST~LWHLq~----~v~ 405 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH--HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRI--EPYRVKGMEIYSTTLWHLQD----EVA 405 (638)
T ss_pred HHHHHHHHHHhhHHh--cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ccccccchhHHHHHHHHHHh----hHH
Confidence 456677777774443 2444455566777777777777777777777653 23 34444444432221 111
Q ss_pred HHHHH-HHHHcCCCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002549 623 HFIAD-QAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMM 701 (909)
Q Consensus 623 ~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 701 (909)
..++. .+.. ..|+.+..|..+++.|.-+++++.|++.|+++++. .|-...+|+.++.-+....++|.|...|+.++
T Consensus 406 Ls~Laq~Li~--~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl-dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al 482 (638)
T KOG1126|consen 406 LSYLAQDLID--TDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL-DPRFAYAYTLLGHESIATEEFDKAMKSFRKAL 482 (638)
T ss_pred HHHHHHHHHh--hCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc-CCccchhhhhcCChhhhhHHHHhHHHHHHhhh
Confidence 22211 1111 34445555555555555555555555555555543 22244455555555555555555555555554
Q ss_pred HcCCCCCcccHHHHHHHHHhcCchhhHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-hHH
Q 002549 702 RDGPSPTVDSINGLLQALIVDGRLNELYVVIQELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYHGMKAAGYFP-TMY 780 (909)
Q Consensus 702 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~ 780 (909)
..++. +.-+|.. +.-.|.+.++++.|.-.|+++.+ +.| +..
T Consensus 483 ~~~~r-hYnAwYG-----------------------------------lG~vy~Kqek~e~Ae~~fqkA~~--INP~nsv 524 (638)
T KOG1126|consen 483 GVDPR-HYNAWYG-----------------------------------LGTVYLKQEKLEFAEFHFQKAVE--INPSNSV 524 (638)
T ss_pred cCCch-hhHHHHh-----------------------------------hhhheeccchhhHHHHHHHhhhc--CCccchh
Confidence 43333 3333333 44455566666666666666655 334 444
Q ss_pred HHHHHHHHHhccCchHHHHHHHHHHHHCCCCC-CHHhHHHHHHHhhccCCHHHHHHHHHHHHHcCCCCCh-hhHHHHHHH
Q 002549 781 LYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKP-DLSIWNSMLKLYTGIEDFKKTIQVYQEIQEADLQPDE-DSFNTLIIM 858 (909)
Q Consensus 781 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~ 858 (909)
....++..+.+.|+.|+|+++++++.. ..| |...-...+..+...+++++|++.++++.+ +-|+. .++..++..
T Consensus 525 i~~~~g~~~~~~k~~d~AL~~~~~A~~--ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki 600 (638)
T KOG1126|consen 525 ILCHIGRIQHQLKRKDKALQLYEKAIH--LDPKNPLCKYHRASILFSLGRYVEALQELEELKE--LVPQESSVFALLGKI 600 (638)
T ss_pred HHhhhhHHHHHhhhhhHHHHHHHHHHh--cCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHH
Confidence 555566667777777777777777765 333 444444555666677778888888888877 77754 667777778
Q ss_pred HHhcCChhhHHHHHHHHHH
Q 002549 859 YCRDCRPEEGLSLMHEMRK 877 (909)
Q Consensus 859 ~~~~g~~~~A~~~~~~~~~ 877 (909)
|.+.|+.+.|+.-|-.|.+
T Consensus 601 ~k~~~~~~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 601 YKRLGNTDLALLHFSWALD 619 (638)
T ss_pred HHHHccchHHHHhhHHHhc
Confidence 8888888888777777764
No 55
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.63 E-value=6.1e-13 Score=140.89 Aligned_cols=283 Identities=12% Similarity=0.076 Sum_probs=176.5
Q ss_pred cccHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHhhcCChhhHHHHHHHHHHcCCCCCCch-HHHHHHHHhhhcCChHHH
Q 002549 581 NERFAEASQVFSDMRFYNIEPSEDLY-RSMVVAYCKMDFPETAHFIADQAEKKGIPFEDLS-IYVDIIDAYGRLKLWQKA 658 (909)
Q Consensus 581 ~g~~~~A~~~~~~m~~~~~~p~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A 658 (909)
.|+++.|.+.+....+.. +++..+ .....+....|+++.|..++.++.+ ..|+... .....+..+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~--~~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAE--LADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHCCCHHHH
Confidence 688888887776654321 222332 2223344677888888888888776 4555432 222346777778888888
Q ss_pred HHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcc-------cHHHHHHHHHhcCchhhHHHH
Q 002549 659 ESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVD-------SINGLLQALIVDGRLNELYVV 731 (909)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~g~~~~A~~~ 731 (909)
...++++.+. .|.++.+...+...|.+.|++++|.+++..+.+....+... +|..++.......+.+...++
T Consensus 173 l~~l~~~~~~-~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~ 251 (398)
T PRK10747 173 RHGVDKLLEV-APRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW 251 (398)
T ss_pred HHHHHHHHhc-CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 8888887776 46677777777888888888888888888887765542111 112222222223333444444
Q ss_pred HHHHHhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccCchHHHHHHHHHHHHCCCC
Q 002549 732 IQELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYHGMKAAGYFPTMYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFK 811 (909)
Q Consensus 732 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 811 (909)
++.+.+. .+.++.....+...+...|+.++|.+++++..+.. |+.... ++......++.+++++.++++.+. .
T Consensus 252 w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~--~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~--~ 324 (398)
T PRK10747 252 WKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQ--YDERLV--LLIPRLKTNNPEQLEKVLRQQIKQ--H 324 (398)
T ss_pred HHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCHHHH--HHHhhccCCChHHHHHHHHHHHhh--C
Confidence 4444322 23445566667777777777777777777777632 333222 222233457777777777777763 4
Q ss_pred CCH-HhHHHHHHHhhccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHH
Q 002549 812 PDL-SIWNSMLKLYTGIEDFKKTIQVYQEIQEADLQPDEDSFNTLIIMYCRDCRPEEGLSLMHEMRK 877 (909)
Q Consensus 812 p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 877 (909)
||. .....++..|...|++++|.+.|+++++ ..|+..++..++.++.+.|+.++|.+++++...
T Consensus 325 P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~--~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 325 GDTPLLWSTLGQLLMKHGEWQEASLAFRAALK--QRPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 444 4566667777777777777777777777 677777777777777777777777777777654
No 56
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.62 E-value=1.3e-12 Score=138.42 Aligned_cols=278 Identities=10% Similarity=0.047 Sum_probs=199.4
Q ss_pred cCChhhHHHHHHHHHHcCCCCCCchHHHHH-HHHhhhcCChHHHHHHHHHHHhcCCCCChHhHH--HHHHHHHHcCCHHH
Q 002549 616 MDFPETAHFIADQAEKKGIPFEDLSIYVDI-IDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWN--ALIKAYAASGCYER 692 (909)
Q Consensus 616 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~ 692 (909)
.|+++.|.+......+. ++.+..+..+ +......|+++.|.+.+.++.+. +|+..... .....+...|+++.
T Consensus 97 eGd~~~A~k~l~~~~~~---~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~ 171 (398)
T PRK10747 97 EGDYQQVEKLMTRNADH---AEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHA 171 (398)
T ss_pred CCCHHHHHHHHHHHHhc---ccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHH
Confidence 58888888776655442 2234444444 34448888999999999888764 33433222 33667788889999
Q ss_pred HHHHHHHHHHcCCCCCcccHHHHHHHHHhcCchhhHHHHHHHHHhCCCCccH-------HHHHHHHHHHHhcCCHHHHHH
Q 002549 693 ARAVFNTMMRDGPSPTVDSINGLLQALIVDGRLNELYVVIQELQDMDFKISK-------SSILLMLDAFARSGNIFEVKK 765 (909)
Q Consensus 693 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~a~~ 765 (909)
|...++++.+..|+ +...+..+...|.+.|+|++|.+++.++.+....++. .++..++.......+.+...+
T Consensus 172 Al~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~ 250 (398)
T PRK10747 172 ARHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKR 250 (398)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 99999998888776 6677788888888889999999888888877654332 123333444444455666666
Q ss_pred HHHHHHhcCCCchHHHHHHHHHHHhccCchHHHHHHHHHHHHCCCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHcCC
Q 002549 766 IYHGMKAAGYFPTMYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDLSIWNSMLKLYTGIEDFKKTIQVYQEIQEADL 845 (909)
Q Consensus 766 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 845 (909)
+++.+.+. .+.++.....++..+...|+.++|.+.+++..+ .+||.... ++.+....++.+++++..++.++ .
T Consensus 251 ~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~--~~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk--~ 323 (398)
T PRK10747 251 WWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLK--RQYDERLV--LLIPRLKTNNPEQLEKVLRQQIK--Q 323 (398)
T ss_pred HHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHH--HHHhhccCCChHHHHHHHHHHHh--h
Confidence 66666432 234667778888888889999999998888887 35555322 23333455888889999988888 7
Q ss_pred CCCh-hhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHhhc
Q 002549 846 QPDE-DSFNTLIIMYCRDCRPEEGLSLMHEMRKLGLEPKLDTYKSLISAFGKQQQLEQAEELLK 908 (909)
Q Consensus 846 ~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 908 (909)
.|++ ..+..++..+.+.|+|++|.+.|+++. ...|+...+..+..++-+.|+.++|...+.
T Consensus 324 ~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al--~~~P~~~~~~~La~~~~~~g~~~~A~~~~~ 385 (398)
T PRK10747 324 HGDTPLLWSTLGQLLMKHGEWQEASLAFRAAL--KQRPDAYDYAWLADALDRLHKPEEAAAMRR 385 (398)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH--hcCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 8865 567788888888999999999998888 457888888888888889999988887764
No 57
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.60 E-value=2.1e-12 Score=137.80 Aligned_cols=295 Identities=10% Similarity=0.021 Sum_probs=161.2
Q ss_pred HhcccHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHH
Q 002549 473 VKGECYDHAAEILRSAIRNGIELDH-EKLLSILSSYNVSGRHLEACELIEFVKQHASESTPPLTQAFIIMLCKAQKLDAA 551 (909)
Q Consensus 473 ~~~~~~~~a~~~~~~~~~~~~~~d~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 551 (909)
...|+++.|.+.+.+..+. .|++ ..+.....+....|+.+.|.+.+..+.+..+.....+.......+...|+++.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 3456666666666555444 3433 334455677788899999999998888766665544555567778889999999
Q ss_pred HHHHHHhhccCCcccchhhHHHHHHHHHhcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH---hhcCChhhHHHHHHH
Q 002549 552 LEEYSNAWGFGFFSKSKTMYESLIHSCEYNERFAEASQVFSDMRFYNIEPSEDLYRSMVVAY---CKMDFPETAHFIADQ 628 (909)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~---~~~~~~~~a~~~~~~ 628 (909)
.+.++.+.+.. |.++..+..+...+.+.|++++|.+++..+.+.++.+..........+. ...+..+.+...+..
T Consensus 173 l~~l~~l~~~~--P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~ 250 (409)
T TIGR00540 173 RHGVDKLLEMA--PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLN 250 (409)
T ss_pred HHHHHHHHHhC--CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 99999998876 8888888999999999999999999999998776443322211111111 111222222223332
Q ss_pred HHHcCCCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 002549 629 AEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPT 708 (909)
Q Consensus 629 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 708 (909)
+... .|. . .+.++..+..++..+...|++++|.+++++.++..|...
T Consensus 251 ~~~~--~p~------------------------------~-~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~ 297 (409)
T TIGR00540 251 WWKN--QPR------------------------------H-RRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDR 297 (409)
T ss_pred HHHH--CCH------------------------------H-HhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcc
Confidence 2221 120 0 112444444444455555555555555555554433311
Q ss_pred cccHHHHHHH--HHhcCchhhHHHHHHHHHhCCCCccH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHH
Q 002549 709 VDSINGLLQA--LIVDGRLNELYVVIQELQDMDFKISK--SSILLMLDAFARSGNIFEVKKIYHGMKAAGYFPTMYLYRV 784 (909)
Q Consensus 709 ~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ 784 (909)
...+. ++.. ....++.+.+.+.+++..+.. +.++ ....++...+.+.|++++|.+.|+........|+...+..
T Consensus 298 ~~~~~-~l~~~~~l~~~~~~~~~~~~e~~lk~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~ 375 (409)
T TIGR00540 298 AISLP-LCLPIPRLKPEDNEKLEKLIEKQAKNV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAM 375 (409)
T ss_pred cchhH-HHHHhhhcCCCChHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHH
Confidence 11101 1111 122234444444444444332 1122 3334455555555555555555553322223355555555
Q ss_pred HHHHHhccCchHHHHHHHHHHH
Q 002549 785 MSGLFCKGKRVRDVEAMVSEMK 806 (909)
Q Consensus 785 l~~~~~~~g~~~~A~~~~~~~~ 806 (909)
++..+.+.|+.++|.+++++.+
T Consensus 376 La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 376 AADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HHHHHHHcCCHHHHHHHHHHHH
Confidence 5555666666666666655543
No 58
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.60 E-value=5.5e-09 Score=107.06 Aligned_cols=567 Identities=13% Similarity=0.131 Sum_probs=309.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChHHHHHHHH
Q 002549 80 ARMLATILAVLGKANQENLAVETFMRAESAVDDT--VQVYNAMMGIYARNGRFQKVQELLDLMRKRGCEPDLVSFNTLIN 157 (909)
Q Consensus 80 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~ 157 (909)
+.+|-.-+..+.++|....-+..|+++....|.+ ...|...+......+-++-+..++.+..+. .|. .-.--|.
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~--~P~--~~eeyie 177 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV--APE--AREEYIE 177 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc--CHH--HHHHHHH
Confidence 3466667777778888888888888877665543 357888888888888888888888887765 233 3455566
Q ss_pred HHHHcCCCCchHHHHHHHHHHHC------CCCCCHHHHHHHHHHHHhcCCHH---HHHHHHHHHHhCCCCCC--HHHHHH
Q 002549 158 ARLRSGAMVPNLGVDLLNEVRRS------GLRPDIITYNTIISACSRESNLE---EAMKVYGDLEAHNCQPD--LWTYNA 226 (909)
Q Consensus 158 ~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~li~~~~~~g~~~---~A~~~~~~~~~~~~~~~--~~~~~~ 226 (909)
-++++++. ++|.+.+...... ..+.+-..|.-+.+...+.-+.- ....+++.+... -+| ...|++
T Consensus 178 ~L~~~d~~--~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~S 253 (835)
T KOG2047|consen 178 YLAKSDRL--DEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCS 253 (835)
T ss_pred HHHhccch--HHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHH
Confidence 66777754 3455555544321 12334455666655555543332 223344444332 344 357899
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 002549 227 MISVYGRCGLFEKAEQLFKELESKGFFPDAVTYNSLLYAFAREGNVEKVKEISENMLKMGFGKDEMTYNTIIHMYGKQGQ 306 (909)
Q Consensus 227 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 306 (909)
|.+.|.+.|.+++|.++|++.... .....-|..+.++|+.-....-+..+--.-.+.+-+.+...
T Consensus 254 LAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~d------------- 318 (835)
T KOG2047|consen 254 LADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVD------------- 318 (835)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhh-------------
Confidence 999999999999999999988765 22455567777777654332222221100001111112222
Q ss_pred HHHHHHHHHHHHhcC-----------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC------CHHHHHHHHH
Q 002549 307 HDVALQLYRDMKLSG-----------RNPDVVTYTVLIDSLGKANKISEAANVMSEMLDASVKP------TLRTYSALIC 369 (909)
Q Consensus 307 ~~~A~~~~~~~~~~~-----------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~~~l~~ 369 (909)
++-...-|+.+.... -+.++..|..-+.. ..|+..+-...+.+..+. +.| ....|..+..
T Consensus 319 l~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~fak 395 (835)
T KOG2047|consen 319 LELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAK 395 (835)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHH
Confidence 222222333332221 12344455544443 356777777777777653 122 2345677777
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCC
Q 002549 370 GYAKAGNRLEAEKTFYCMRRSGIRPD---HLAYSVMLDIFLRFNETNKAMMLYQEMVSNGFTPDQALYEIMIGVLGRENK 446 (909)
Q Consensus 370 ~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 446 (909)
.|-..|+++.|+.+|++..+-..+.- ..+|......-.+..+++.|.++.+.... .|.... + .+...+.
T Consensus 396 lYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~---vP~~~~----~-~~yd~~~ 467 (835)
T KOG2047|consen 396 LYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATH---VPTNPE----L-EYYDNSE 467 (835)
T ss_pred HHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhc---CCCchh----h-hhhcCCC
Confidence 78888888888888888776433211 33455555555566677777776666543 232211 1 1111111
Q ss_pred HHHHHHHHHHHHHhcCCChHHHHHHHHhcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhc
Q 002549 447 GEEIRKVVRDMKELSGINMQEISSILVKGECYDHAAEILRSAIRNGIELDHEKLLSILSSYNVSGRHLEACELIEFVKQH 526 (909)
Q Consensus 447 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 526 (909)
.-++ ++ ......|...+..-...|-++....+++.+++.
T Consensus 468 pvQ~-rl----------------------------------------hrSlkiWs~y~DleEs~gtfestk~vYdriidL 506 (835)
T KOG2047|consen 468 PVQA-RL----------------------------------------HRSLKIWSMYADLEESLGTFESTKAVYDRIIDL 506 (835)
T ss_pred cHHH-HH----------------------------------------HHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 1100 00 001123333444444455666666677776665
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhccCCcccchhhHHHHHHHHHhc---ccHHHHHHHHHHHHhCCCCCCH
Q 002549 527 ASESTPPLTQAFIIMLCKAQKLDAALEEYSNAWGFGFFSKSKTMYESLIHSCEYN---ERFAEASQVFSDMRFYNIEPSE 603 (909)
Q Consensus 527 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~~~~p~~ 603 (909)
... ++.+....+..+-...-++++.++|++-...-..|.-...|+..+.-+..+ ...+.|..+|++.++ |++|..
T Consensus 507 ria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~ 584 (835)
T KOG2047|consen 507 RIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEH 584 (835)
T ss_pred hcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHH
Confidence 443 233344444455566677888888888766654455566777777666652 356778888888776 555543
Q ss_pred HHH--HHHHHHHhhcCChhhHHHHHHHHHHcCCCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHh---HH
Q 002549 604 DLY--RSMVVAYCKMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKV---WN 678 (909)
Q Consensus 604 ~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~---~~ 678 (909)
.-+ ......=-+.|-...|..+++++...-...+-..+|+..+.--...=-.....++|+++++. .| +..+ .-
T Consensus 585 aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~-Lp-~~~~r~mcl 662 (835)
T KOG2047|consen 585 AKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES-LP-DSKAREMCL 662 (835)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh-CC-hHHHHHHHH
Confidence 322 22222223456667777777776543222222444444443222222233445666666654 22 2222 22
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCcccHHHHHHHHHhcCch
Q 002549 679 ALIKAYAASGCYERARAVFNTMMRD-GPSPTVDSINGLLQALIVDGRL 725 (909)
Q Consensus 679 ~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~ 725 (909)
-....=++.|..+.|..++....+. +|..+..-|.+.=..=.++|+-
T Consensus 663 rFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGne 710 (835)
T KOG2047|consen 663 RFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNE 710 (835)
T ss_pred HHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCH
Confidence 2334445567777777777766554 2333344455555555666663
No 59
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.58 E-value=4.1e-10 Score=106.50 Aligned_cols=457 Identities=11% Similarity=0.066 Sum_probs=252.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 002549 333 IDSLGKANKISEAANVMSEMLDASVKPTLRTYSALICGYAKAGNRLEAEKTFYCMRRSGIRPDHLAYSVMLDIFLRFNET 412 (909)
Q Consensus 333 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 412 (909)
+.-+....++..|..+++--...+-+-...+-..+..++.+.|++++|...+..+.+.. .|+...+..|..++.-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence 34455667777777777665543322223344445566677888888888887777643 35556666666666666777
Q ss_pred hHHHHHHHHHHHCCCCCCHHHH-HHHHHHHhcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHhcccHHHHHHHHHHHHHc
Q 002549 413 NKAMMLYQEMVSNGFTPDQALY-EIMIGVLGRENKGEEIRKVVRDMKELSGINMQEISSILVKGECYDHAAEILRSAIRN 491 (909)
Q Consensus 413 ~~A~~~~~~~~~~~~~~~~~~~-~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 491 (909)
.+|..+-... |+.... ..|...-.+.|+-++...+-..+.+.. ...-+++++.-..-.+.+|+.+|++.+..
T Consensus 108 ~eA~~~~~ka------~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~-EdqLSLAsvhYmR~HYQeAIdvYkrvL~d 180 (557)
T KOG3785|consen 108 IEAKSIAEKA------PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTL-EDQLSLASVHYMRMHYQEAIDVYKRVLQD 180 (557)
T ss_pred HHHHHHHhhC------CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhH-HHHHhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7777665543 333333 333444456666555554444433311 11112333333344455555555555432
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhccCCcccchhhH
Q 002549 492 GIELDHEKLLSILSSYNVSGRHLEACELIEFVKQHASESTPPLTQAFIIMLCKAQKLDAALEEYSNAWGFGFFSKSKTMY 571 (909)
Q Consensus 492 ~~~~d~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 571 (909)
.|+-..++. -++..|.+..-++-+.+++..-... +|.++.+.
T Consensus 181 --n~ey~alNV----------------------------------y~ALCyyKlDYydvsqevl~vYL~q--~pdStiA~ 222 (557)
T KOG3785|consen 181 --NPEYIALNV----------------------------------YMALCYYKLDYYDVSQEVLKVYLRQ--FPDSTIAK 222 (557)
T ss_pred --ChhhhhhHH----------------------------------HHHHHHHhcchhhhHHHHHHHHHHh--CCCcHHHH
Confidence 122222221 2233344444444444444443332 34555555
Q ss_pred HHHHHHHHh--cccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCCchHHHHHHHHh
Q 002549 572 ESLIHSCEY--NERFAEASQVFSDMRFYNIEPSEDLYRSMVVAYCKMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAY 649 (909)
Q Consensus 572 ~~li~~~~~--~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 649 (909)
|.......+ .|+.. .+-..++.+.+-..-+..-..+-+-+.-..+-|.|.+++-.+++ +. +.+...++--|
T Consensus 223 NLkacn~fRl~ngr~a--e~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~--~I---PEARlNL~iYy 295 (557)
T KOG3785|consen 223 NLKACNLFRLINGRTA--EDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMK--HI---PEARLNLIIYY 295 (557)
T ss_pred HHHHHHHhhhhccchh--HHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHh--hC---hHhhhhheeee
Confidence 544444333 23322 22222222211100000000001111222345667766655554 22 34556677778
Q ss_pred hhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcC-------CHHHHHHHHHHHHHcCCCCCc-ccHHHHHHHHHh
Q 002549 650 GRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASG-------CYERARAVFNTMMRDGPSPTV-DSINGLLQALIV 721 (909)
Q Consensus 650 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-------~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~ 721 (909)
.++++.++|..+.+++. |.++.-|-.-+-.+...| ...-|...|...-+.+..-|. .--.++..++.-
T Consensus 296 L~q~dVqeA~~L~Kdl~----PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL 371 (557)
T KOG3785|consen 296 LNQNDVQEAISLCKDLD----PTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFL 371 (557)
T ss_pred cccccHHHHHHHHhhcC----CCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHH
Confidence 89999999988887653 223333322222233332 345566666665444433232 224456667777
Q ss_pred cCchhhHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccCchHHHHHH
Q 002549 722 DGRLNELYVVIQELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYHGMKAAGYFPTMYLYRVMSGLFCKGKRVRDVEAM 801 (909)
Q Consensus 722 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 801 (909)
.-++++.+..++.+..--...|...+ .+.++.+..|++.+|.++|-++....+.-...-...|..+|.++++...|.++
T Consensus 372 ~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~ 450 (557)
T KOG3785|consen 372 SFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDM 450 (557)
T ss_pred HHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHH
Confidence 78889999999888766544444444 37889999999999999998887644333333345667889999999999888
Q ss_pred HHHHHHCCCCCCHHh-HHHHHHHhhccCCHHHHHHHHHHHHHcCCCCChhhH
Q 002549 802 VSEMKEAGFKPDLSI-WNSMLKLYTGIEDFKKTIQVYQEIQEADLQPDEDSF 852 (909)
Q Consensus 802 ~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 852 (909)
+-++- .+.+..+ ...+.+.|.+.+.+=-|.+.|..+.. +.|++..|
T Consensus 451 ~lk~~---t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~--lDP~pEnW 497 (557)
T KOG3785|consen 451 MLKTN---TPSERFSLLQLIANDCYKANEFYYAAKAFDELEI--LDPTPENW 497 (557)
T ss_pred HHhcC---CchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc--cCCCcccc
Confidence 76663 2334444 34455678999999999999998888 78876654
No 60
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.56 E-value=3.2e-08 Score=102.74 Aligned_cols=715 Identities=13% Similarity=0.120 Sum_probs=317.2
Q ss_pred CChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 002549 58 VSWQRALEVYEWLNLRHWFSPNARMLATILAVLGKANQENLAVETFMRAESAVDDTVQVYNAMMGIYARNGRFQKVQELL 137 (909)
Q Consensus 58 ~~~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 137 (909)
+++..|-.+|- .|. . ....|.+|....++++|+.+-.-. ..|.-...-.+.++.+...|+-++|-++=
T Consensus 545 kkfk~ae~ifl---eqn-----~--te~aigmy~~lhkwde~i~lae~~--~~p~~eklk~sy~q~l~dt~qd~ka~elk 612 (1636)
T KOG3616|consen 545 KKFKEAEMIFL---EQN-----A--TEEAIGMYQELHKWDEAIALAEAK--GHPALEKLKRSYLQALMDTGQDEKAAELK 612 (1636)
T ss_pred hhhhHHHHHHH---hcc-----c--HHHHHHHHHHHHhHHHHHHHHHhc--CChHHHHHHHHHHHHHHhcCchhhhhhhc
Confidence 35666666662 221 1 124677888888888888765421 11223334455566667777777765432
Q ss_pred HHHHHcCCCCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHCCCCCCHHHHHHHH-------------HHHHhcCCHHH
Q 002549 138 DLMRKRGCEPDLVSFNTLINARLRSGAMVPNLGVDLLNEVRRSGLRPDIITYNTII-------------SACSRESNLEE 204 (909)
Q Consensus 138 ~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li-------------~~~~~~g~~~~ 204 (909)
.. +- .-...|..|.++|... .|.+... -...+..|......+. ..|.+..+++.
T Consensus 613 ----~s----dg-d~laaiqlyika~~p~--~a~~~a~--n~~~l~~de~il~~ia~alik~elydkagdlfeki~d~dk 679 (1636)
T KOG3616|consen 613 ----ES----DG-DGLAAIQLYIKAGKPA--KAARAAL--NDEELLADEEILEHIAAALIKGELYDKAGDLFEKIHDFDK 679 (1636)
T ss_pred ----cc----cC-ccHHHHHHHHHcCCch--HHHHhhc--CHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHH
Confidence 11 11 1233466677777542 2222110 0001112333333333 33334444455
Q ss_pred HHHHHHHHHh---------CCCCCCHHHH-HHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 002549 205 AMKVYGDLEA---------HNCQPDLWTY-NAMISVYGRCGLFEKAEQLFKELESKGFFPDAVTYNSLLYAFAREGNVEK 274 (909)
Q Consensus 205 A~~~~~~~~~---------~~~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~ 274 (909)
|.++|.+--. ..++..+++. ......+...|+++.|+..|-+..- .-..+.+-....++.+
T Consensus 680 ale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~---------~~kaieaai~akew~k 750 (1636)
T KOG3616|consen 680 ALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANC---------LIKAIEAAIGAKEWKK 750 (1636)
T ss_pred HHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh---------HHHHHHHHhhhhhhhh
Confidence 5554432110 0111111111 1122233334444444444322211 1122333445556666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002549 275 VKEISENMLKMGFGKDEMTYNTIIHMYGKQGQHDVALQLYRDMKLSGRNPDVVTYTVLIDSLGKANKISEAANVMSEMLD 354 (909)
Q Consensus 275 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 354 (909)
|..+++.+.+.. .-.--|..+.+.|+..|+++.|.++|.+.- .++-.|.+|.+.|+++.|.++-++..
T Consensus 751 ai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~kla~e~~- 818 (1636)
T KOG3616|consen 751 AISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFKLAEECH- 818 (1636)
T ss_pred hHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHHHHHHHhc-
Confidence 666666655543 223345556666666666666666665432 23344566666666666666655543
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHH
Q 002549 355 ASVKPTLRTYSALICGYAKAGNRLEAEKTFYCMRRSGIRPDHLAYSVMLDIFLRFNETNKAMMLYQEMVSNGFTPDQALY 434 (909)
Q Consensus 355 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 434 (909)
|.+...+.|.+-..-.-..|++.+|++++-.+. .|+. .|.+|-+.|..+..+++.++-... .-..|.
T Consensus 819 -~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k~h~d---~l~dt~ 885 (1636)
T KOG3616|consen 819 -GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEKHHGD---HLHDTH 885 (1636)
T ss_pred -CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHHhChh---hhhHHH
Confidence 223334444444444555666666665553322 1331 234455555555555444433211 011233
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHH-----------------------hcCCChH-HHHHHHHhcccHHHHHHHHHHHHH
Q 002549 435 EIMIGVLGRENKGEEIRKVVRDMKE-----------------------LSGINMQ-EISSILVKGECYDHAAEILRSAIR 490 (909)
Q Consensus 435 ~~ll~~~~~~g~~~~a~~~~~~~~~-----------------------~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~ 490 (909)
..+..-|...|+...|...+-+..+ ..+.+.. .+..++.+.--.+.|..++...
T Consensus 886 ~~f~~e~e~~g~lkaae~~flea~d~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavkllnk~-- 963 (1636)
T KOG3616|consen 886 KHFAKELEAEGDLKAAEEHFLEAGDFKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKH-- 963 (1636)
T ss_pred HHHHHHHHhccChhHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhh--
Confidence 3333444444555444444322211 0111111 1222222222233333333221
Q ss_pred cCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhccCCcccchhh
Q 002549 491 NGIELDHEKLLSILSSYNVSGRHLEACELIEFVKQHASESTPPLTQAFIIMLCKAQKLDAALEEYSNAWGFGFFSKSKTM 570 (909)
Q Consensus 491 ~~~~~d~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 570 (909)
..+..-+...+..+.++-|.++-....+.. ...+...+...+-..|++++|-+.|-.+.+.+ .-..+
T Consensus 964 -------gll~~~id~a~d~~afd~afdlari~~k~k---~~~vhlk~a~~ledegk~edaskhyveaikln---tynit 1030 (1636)
T KOG3616|consen 964 -------GLLEAAIDFAADNCAFDFAFDLARIAAKDK---MGEVHLKLAMFLEDEGKFEDASKHYVEAIKLN---TYNIT 1030 (1636)
T ss_pred -------hhHHHHhhhhhcccchhhHHHHHHHhhhcc---CccchhHHhhhhhhccchhhhhHhhHHHhhcc---cccch
Confidence 112223334455566666665554444322 23455566667778888888888888877654 22334
Q ss_pred HHHHH-----HHHHhcc-cHHHHHHHHHHHHh--------CCCCCC--HHHHHHHHHHHhhcCChhhHHHHHHHHHHcCC
Q 002549 571 YESLI-----HSCEYNE-RFAEASQVFSDMRF--------YNIEPS--EDLYRSMVVAYCKMDFPETAHFIADQAEKKGI 634 (909)
Q Consensus 571 ~~~li-----~~~~~~g-~~~~A~~~~~~m~~--------~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 634 (909)
|...+ .-+.+.| ++++|..+|-.=.+ ...-|+ +..+..-.......|++.+|..++-++ -
T Consensus 1031 wcqavpsrfd~e~ir~gnkpe~av~mfi~dndwa~aervae~h~~~~l~dv~tgqar~aiee~d~~kae~fllra----n 1106 (1636)
T KOG3616|consen 1031 WCQAVPSRFDAEFIRAGNKPEEAVEMFIHDNDWAAAERVAEAHCEDLLADVLTGQARGAIEEGDFLKAEGFLLRA----N 1106 (1636)
T ss_pred hhhcccchhhHHHHHcCCChHHHHHHhhhcccHHHHHHHHHhhChhhhHHHHhhhhhccccccchhhhhhheeec----C
Confidence 43322 2234445 56667666522110 001111 111222222233344444444433221 1
Q ss_pred CCCCchHHHHHHHHhhhcCChHHHHHHHHHHHh----------------cCCCCChHhHHHHHHHHHHcCCHHHHHHHHH
Q 002549 635 PFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQ----------------RCAPVDRKVWNALIKAYAASGCYERARAVFN 698 (909)
Q Consensus 635 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----------------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 698 (909)
.|+ ...+.|...+-|.+|+++.+..+- .| .-.+..+-.-..-.-++|+|.+|...+-
T Consensus 1107 kp~------i~l~yf~e~~lw~dalri~kdylp~q~a~iqeeyek~~~k~g-argvd~fvaqak~weq~gd~rkav~~~l 1179 (1636)
T KOG3616|consen 1107 KPD------IALNYFIEAELWPDALRIAKDYLPHQAAAIQEEYEKEALKKG-ARGVDGFVAQAKEWEQAGDWRKAVDALL 1179 (1636)
T ss_pred CCc------hHHHHHHHhccChHHHHHHHhhChhHHHHHHHHHHHHHHhcc-ccccHHHHHHHHHHHhcccHHHHHHHHh
Confidence 121 234455666667776666543221 11 0122233333444455566666666555
Q ss_pred HHHHcCCCCCcccHHHHHHHHHhcCchhhHHHHHHHHHhCCCCccH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 002549 699 TMMRDGPSPTVDSINGLLQALIVDGRLNELYVVIQELQDMDFKISK--SSILLMLDAFARSGNIFEVKKIYHGMKAAGYF 776 (909)
Q Consensus 699 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 776 (909)
++-+ |+.--..|+..| +++|..+--++. .++. ......+-++...|.-+.|.+++-..-
T Consensus 1180 kinr-----dst~nd~l~e~~-----~~kaadl~ikfl----~~d~nme~i~aa~~al~~~~~~e~aael~l~f~----- 1240 (1636)
T KOG3616|consen 1180 KINR-----DSTDNDALAEHC-----TEKAADLSIKFL----MGDENMEVIGAAGGALDEAGCHEAAAELLLLFD----- 1240 (1636)
T ss_pred hhcc-----CCCCcHHHHHHH-----HHHHHhhhhhhc----CCccchhhHHhcchhhhcccccHHHHHHHHHhh-----
Confidence 5421 111111222111 111111111110 1111 222233333333444444433332111
Q ss_pred chHHHHHHHHHHHhccCchHHHHHH---------------HHHHHHCCCCCCH---HhHHHHHHHhhccCCHHHHHHHHH
Q 002549 777 PTMYLYRVMSGLFCKGKRVRDVEAM---------------VSEMKEAGFKPDL---SIWNSMLKLYTGIEDFKKTIQVYQ 838 (909)
Q Consensus 777 p~~~~~~~l~~~~~~~g~~~~A~~~---------------~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~ 838 (909)
.....++++++..++.+|.++ +.+.++..-+.|. +-..+.+..+..++++++|++..
T Consensus 1241 ----~~keaida~~~~eewakakqvake~~p~~~~~idk~yke~lknegkl~eli~vdviaaidl~ien~qwdk~idta- 1315 (1636)
T KOG3616|consen 1241 ----LSKEAIDAFCEAEEWAKAKQVAKELDPEMEDEIDKHYKEFLKNEGKLDELIDVDVIAAIDLMIENDQWDKAIDTA- 1315 (1636)
T ss_pred ----hHHHHHHHHHhHHHHHHHHHHHHHhCchhhHHHHHHHHHHHhccCccccccchhHHHHHHHHHhcccHHHHHHHH-
Confidence 111234445544444444443 3333332222232 12344556777888888887644
Q ss_pred HHHHcCCCCChhhHH-HHHHHHHhcCChhhHHHHHHHHHHcCCCCChhh
Q 002549 839 EIQEADLQPDEDSFN-TLIIMYCRDCRPEEGLSLMHEMRKLGLEPKLDT 886 (909)
Q Consensus 839 ~~~~~~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 886 (909)
.+.+++|--.-|. ..+..+.+.|+...|+.++++- |-+.|+..
T Consensus 1316 --k~qnykpil~kyva~yaa~li~~~d~aq~lal~~q~---ga~anpan 1359 (1636)
T KOG3616|consen 1316 --KKQNYKPILDKYVALYAAHLIHEGDLAQALALLEQH---GAPANPAN 1359 (1636)
T ss_pred --HhcccHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHh---CCCCCccc
Confidence 4556777544443 4556777889999998888775 55444443
No 61
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.56 E-value=1.2e-09 Score=114.57 Aligned_cols=508 Identities=13% Similarity=0.107 Sum_probs=285.8
Q ss_pred HHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHH---HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 002549 232 GRCGLFEKAEQLFKELESKGFFPDAVTYNSLLYAF---AREGNVEKVKEISENMLKMGFGKDEMTYNTIIHMYGKQGQHD 308 (909)
Q Consensus 232 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~---~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 308 (909)
.+.+..++++.-+......++..+..++..+..++ ...++.+++ ++-.....-+.|....+.+.+..
T Consensus 238 ~~~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~--~Lllli~es~i~Re~~~d~ilsl-------- 307 (799)
T KOG4162|consen 238 KKLSGPKEAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQEEV--ILLLLIEESLIPRENIEDAILSL-------- 307 (799)
T ss_pred cCCCCchHHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHHHH--HHHHHHHhhccccccHHHHHHHH--------
Confidence 34467778888888877777777777776665443 345566655 22222222222222222221111
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002549 309 VALQLYRDMKLSGRNPDVVTYTVLIDSLGKANKISEAANVMSEMLDASVKPTLRTYSALICGYAKAGNRLEAEKTFYCMR 388 (909)
Q Consensus 309 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 388 (909)
.-.+.++....+..|...|..+.-++...|+++.+-+.|++....- .-....|..+...|...|.-..|..+++...
T Consensus 308 --m~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~ 384 (799)
T KOG4162|consen 308 --MLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESL 384 (799)
T ss_pred --HHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhc
Confidence 0112222222334566677777777788888888888888876532 2355667777777777787777777777665
Q ss_pred HCCCCCC-HHHHHHHHHHHH-HcCCHhHHHHHHHHHHHC--CC--CCCHHHHHHHHHHHhcC-----------CCHHHHH
Q 002549 389 RSGIRPD-HLAYSVMLDIFL-RFNETNKAMMLYQEMVSN--GF--TPDQALYEIMIGVLGRE-----------NKGEEIR 451 (909)
Q Consensus 389 ~~~~~~~-~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~--~~--~~~~~~~~~ll~~~~~~-----------g~~~~a~ 451 (909)
...-.|+ ...+-..-..|. +.+.++++..+-.+.++. +. ......+..+.-+|... ....++.
T Consensus 385 ~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~ksl 464 (799)
T KOG4162|consen 385 KKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSL 464 (799)
T ss_pred ccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHH
Confidence 5432233 333333333333 346667777766666652 11 12233344444344321 1234567
Q ss_pred HHHHHHHHhcCCChHHHHH---HHHhcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCC
Q 002549 452 KVVRDMKELSGINMQEISS---ILVKGECYDHAAEILRSAIRNGIELDHEKLLSILSSYNVSGRHLEACELIEFVKQHAS 528 (909)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~a~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 528 (909)
+.+++..+.++.+|+.+.. -+....+.+.|.+..++.+..+...+...|..+.-.+...+++.+|..+.+..+...+
T Consensus 465 qale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~ 544 (799)
T KOG4162|consen 465 QALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFG 544 (799)
T ss_pred HHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhh
Confidence 7788888888888877654 3455677888888888888887777888888888888888888888888887766433
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHhhccCCcccchhhHHHHHHHHHhcccHHHHHHHHHHHHhCCCCC--CHHHH
Q 002549 529 ESTPPLTQAFIIMLCKAQKLDAALEEYSNAWGFGFFSKSKTMYESLIHSCEYNERFAEASQVFSDMRFYNIEP--SEDLY 606 (909)
Q Consensus 529 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p--~~~~~ 606 (909)
.. ......-+..-...++.++|+.....+... |...- ...+.++-.....+...+.-.-..| ...++
T Consensus 545 ~N-~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~---------we~~~-~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~s 613 (799)
T KOG4162|consen 545 DN-HVLMDGKIHIELTFNDREEALDTCIHKLAL---------WEAEY-GVQQTLDEGKLLRLKAGLHLALSQPTDAISTS 613 (799)
T ss_pred hh-hhhchhhhhhhhhcccHHHHHHHHHHHHHH---------HHhhh-hHhhhhhhhhhhhhhcccccCcccccccchhh
Confidence 21 111111122222355666665554444321 11000 0001111111222222221100011 11222
Q ss_pred HHHHHHHh---hcCChhhHHHHHHHHHHcCCCCCC-------chHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHh
Q 002549 607 RSMVVAYC---KMDFPETAHFIADQAEKKGIPFED-------LSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKV 676 (909)
Q Consensus 607 ~~l~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 676 (909)
..+..... +.-..+.. +-.....|.. ...+...+..+.+.++.++|...+.++.+. .+.....
T Consensus 614 r~ls~l~a~~~~~~~se~~------Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~ 686 (799)
T KOG4162|consen 614 RYLSSLVASQLKSAGSELK------LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASV 686 (799)
T ss_pred HHHHHHHHhhhhhcccccc------cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHH
Confidence 22222111 11111111 0001111221 233445666677777777777777777665 5666777
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCchhhHHH--HHHHHHhCCCCccHHHHHHHHHHH
Q 002549 677 WNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQALIVDGRLNELYV--VIQELQDMDFKISKSSILLMLDAF 754 (909)
Q Consensus 677 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~~~~~~~~~~~l~~~~ 754 (909)
|+..+..+...|++++|.+.|..++..+|. ++.+...+..++.+.|+..-|.. ++..+.+.+ +.++..|..+..++
T Consensus 687 ~~~~G~~~~~~~~~~EA~~af~~Al~ldP~-hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~ 764 (799)
T KOG4162|consen 687 YYLRGLLLEVKGQLEEAKEAFLVALALDPD-HVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVF 764 (799)
T ss_pred HHHhhHHHHHHHhhHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 777777777778888888888887776666 66667777777777777776666 777777766 34455566677777
Q ss_pred HhcCCHHHHHHHHHHHHh
Q 002549 755 ARSGNIFEVKKIYHGMKA 772 (909)
Q Consensus 755 ~~~g~~~~a~~~~~~~~~ 772 (909)
-+.|+.++|.+.|+...+
T Consensus 765 k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 765 KKLGDSKQAAECFQAALQ 782 (799)
T ss_pred HHccchHHHHHHHHHHHh
Confidence 888888888888877765
No 62
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.55 E-value=4.8e-09 Score=110.11 Aligned_cols=589 Identities=12% Similarity=0.101 Sum_probs=338.7
Q ss_pred CHHHHHHHHH--HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHC-C--------CC
Q 002549 185 DIITYNTIIS--ACSRESNLEEAMKVYGDLEAHNCQPDLWTYNAMISVYGRCGLFEKAEQLFKELESK-G--------FF 253 (909)
Q Consensus 185 ~~~~~~~li~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~--------~~ 253 (909)
|..|-..+++ .|...|+.+.|.+-.+-+. +...|..|.+.+.+..+.+-|.-.+..|... | -.
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~ 798 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN 798 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC
Confidence 5667777764 4778899999999888776 5678999999999999999888887777532 1 11
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 002549 254 PDAVTYNSLLYAFAREGNVEKVKEISENMLKMGFGKDEMTYNTIIHMYGKQGQHDVALQLYRDMKLSGRNPDVVTYTVLI 333 (909)
Q Consensus 254 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 333 (909)
|+ .+-..+.-.-...|.+++|..++.+-.+ |..|=..|-..|.+++|.++-+.--.-. =..||....
T Consensus 799 ~~-e~eakvAvLAieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA 865 (1416)
T KOG3617|consen 799 GE-EDEAKVAVLAIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYA 865 (1416)
T ss_pred Cc-chhhHHHHHHHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHH
Confidence 21 2222222234578889999999987665 3445566778899999998876433221 123555556
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHh
Q 002549 334 DSLGKANKISEAANVMSEMLDASVKPTLRTYSALICGYAKAGNRLEAEKTFYCMRRSGIRPDHLAYSVMLDIFLRFNETN 413 (909)
Q Consensus 334 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 413 (909)
.-+-..++.+.|++.|++.-. |-...+..|. .++..-+...+.+ .|...|.-....+-..|+.+
T Consensus 866 ~~Lear~Di~~AleyyEK~~~----hafev~rmL~------e~p~~~e~Yv~~~------~d~~L~~WWgqYlES~Gemd 929 (1416)
T KOG3617|consen 866 KYLEARRDIEAALEYYEKAGV----HAFEVFRMLK------EYPKQIEQYVRRK------RDESLYSWWGQYLESVGEMD 929 (1416)
T ss_pred HHHHhhccHHHHHHHHHhcCC----hHHHHHHHHH------hChHHHHHHHHhc------cchHHHHHHHHHHhcccchH
Confidence 666677889999998887521 1111222221 1222222333332 24455555556666778888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHhcccHHHHHHHHHHHHHcCC
Q 002549 414 KAMMLYQEMVSNGFTPDQALYEIMIGVLGRENKGEEIRKVVRDMKELSGINMQEISSILVKGECYDHAAEILRSAIRNGI 493 (909)
Q Consensus 414 ~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 493 (909)
.|+.+|..... |-++++..|-.|+.++|.++.++-.. ....-.+++.|-..|++.+|...|.++.
T Consensus 930 aAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~esgd--~AAcYhlaR~YEn~g~v~~Av~FfTrAq---- 994 (1416)
T KOG3617|consen 930 AALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEESGD--KAACYHLARMYENDGDVVKAVKFFTRAQ---- 994 (1416)
T ss_pred HHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhccc--HHHHHHHHHHhhhhHHHHHHHHHHHHHH----
Confidence 88888877653 56677778888888888877765322 1122346677778888888888887763
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC-CHHHHHHHHHHhhccCCcccchhhHH
Q 002549 494 ELDHEKLLSILSSYNVSGRHLEACELIEFVKQHASESTPPLTQAFIIMLCKAQ-KLDAALEEYSNAWGFGFFSKSKTMYE 572 (909)
Q Consensus 494 ~~d~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~ 572 (909)
++...|+.|-..+.-++-. ..+.-.++.. ....+..|-.+| ..+.|..+|.++-..+
T Consensus 995 -----afsnAIRlcKEnd~~d~L~---nlal~s~~~d----~v~aArYyEe~g~~~~~AVmLYHkAGm~~---------- 1052 (1416)
T KOG3617|consen 995 -----AFSNAIRLCKENDMKDRLA---NLALMSGGSD----LVSAARYYEELGGYAHKAVMLYHKAGMIG---------- 1052 (1416)
T ss_pred -----HHHHHHHHHHhcCHHHHHH---HHHhhcCchh----HHHHHHHHHHcchhhhHHHHHHHhhcchH----------
Confidence 4555555554444332221 1111111110 111222343444 5555555554442211
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCCchHHHHHHHHhhhc
Q 002549 573 SLIHSCEYNERFAEASQVFSDMRFYNIEPSEDLYRSMVVAYCKMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRL 652 (909)
Q Consensus 573 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 652 (909)
-.+.......++ .|++++.+=+ ....|+..++.....++...++++|..++..+.+. .... -++..
T Consensus 1053 kALelAF~tqQf-~aL~lIa~DL--d~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~----------~~Al-qlC~~ 1118 (1416)
T KOG3617|consen 1053 KALELAFRTQQF-SALDLIAKDL--DAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREF----------SGAL-QLCKN 1118 (1416)
T ss_pred HHHHHHHhhccc-HHHHHHHHhc--CCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH----------HHHH-HHHhc
Confidence 001111111111 2333333222 23346677777777777888888888777655441 1111 12223
Q ss_pred CChHHHHHHHHHHH-hc-CCCC---ChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCchhh
Q 002549 653 KLWQKAESLVGCLR-QR-CAPV---DRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQALIVDGRLNE 727 (909)
Q Consensus 653 ~~~~~A~~~~~~~~-~~-~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 727 (909)
.+..--.++-+.+- .+ +.++ ...+...++..|.++|.|..|-+-|.++-. + -.-++++.+.|+.++
T Consensus 1119 ~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGd---K------l~AMraLLKSGdt~K 1189 (1416)
T KOG3617|consen 1119 RNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGD---K------LSAMRALLKSGDTQK 1189 (1416)
T ss_pred CCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhh---H------HHHHHHHHhcCCcce
Confidence 33333333333331 11 1222 145667788899999999999888777622 1 134566666666544
Q ss_pred HH-------------HHHHHHHhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccCc
Q 002549 728 LY-------------VVIQELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYHGMKAAGYFPTMYLYRVMSGLFCKGKR 794 (909)
Q Consensus 728 A~-------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 794 (909)
.. -.-+-++..++..++.+...++..|.+..-++.--.+|.....- ....|..+-. ..|-
T Consensus 1190 I~FFAn~sRqkEiYImAANyLQtlDWq~~pq~mK~I~tFYTKgqafd~LanFY~~cAqi----Eiee~q~ydK---a~gA 1262 (1416)
T KOG3617|consen 1190 IRFFANTSRQKEIYIMAANYLQTLDWQDNPQTMKDIETFYTKGQAFDHLANFYKSCAQI----EIEELQTYDK---AMGA 1262 (1416)
T ss_pred EEEEeeccccceeeeehhhhhhhcccccChHHHhhhHhhhhcchhHHHHHHHHHHHHHh----hHHHHhhhhH---HhHH
Confidence 21 11233445677888888888888888776666665566555431 1222222211 2355
Q ss_pred hHHHHHHHHHHHHCCCCCCHH-hHHHH----------HHHhh-ccCCHHHHHHHHHHHHHcCCCCC----hhhHHHHHHH
Q 002549 795 VRDVEAMVSEMKEAGFKPDLS-IWNSM----------LKLYT-GIEDFKKTIQVYQEIQEADLQPD----EDSFNTLIIM 858 (909)
Q Consensus 795 ~~~A~~~~~~~~~~~~~p~~~-~~~~l----------~~~~~-~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~ 858 (909)
+++|-..+.++..++ +.. .++.| +.... ...|..+.+.-.+.+++.-..|| ...|..|+..
T Consensus 1263 l~eA~kCl~ka~~k~---~~~t~l~~Lq~~~a~vk~~l~~~q~~~eD~~~~i~qc~~lleep~ld~~Ir~~~~~a~lie~ 1339 (1416)
T KOG3617|consen 1263 LEEAAKCLLKAEQKN---MSTTGLDALQEDLAKVKVQLRKLQIMKEDAADGIRQCTTLLEEPILDDIIRCTRLFALLIED 1339 (1416)
T ss_pred HHHHHHHHHHHHhhc---chHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhCcCCCCcchhHHHHHHHHHH
Confidence 667777777766432 222 22222 22211 12366677777777777323332 2457788999
Q ss_pred HHhcCChhhHHHHHHHHHHc
Q 002549 859 YCRDCRPEEGLSLMHEMRKL 878 (909)
Q Consensus 859 ~~~~g~~~~A~~~~~~~~~~ 878 (909)
|....+|..|...+++|..+
T Consensus 1340 ~v~~k~y~~AyRal~el~~k 1359 (1416)
T KOG3617|consen 1340 HVSRKNYKPAYRALTELQKK 1359 (1416)
T ss_pred HHhhhhccHHHHHHHHHhhc
Confidence 99999999999999999864
No 63
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.55 E-value=3e-08 Score=102.89 Aligned_cols=404 Identities=14% Similarity=0.091 Sum_probs=214.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 002549 191 TIISACSRESNLEEAMKVYGDLEAHNCQPDLWTYNAMISVYGRCGLFEKAEQLFKELESKGFFPDAVTYNSLLYAFAREG 270 (909)
Q Consensus 191 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g 270 (909)
+.|+.|.+.|.+..|.+....-.. ...|......+..++.+..-+++|-++|+++.. +...+..|-+..
T Consensus 620 aaiqlyika~~p~~a~~~a~n~~~--l~~de~il~~ia~alik~elydkagdlfeki~d---------~dkale~fkkgd 688 (1636)
T KOG3616|consen 620 AAIQLYIKAGKPAKAARAALNDEE--LLADEEILEHIAAALIKGELYDKAGDLFEKIHD---------FDKALECFKKGD 688 (1636)
T ss_pred HHHHHHHHcCCchHHHHhhcCHHH--hhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhC---------HHHHHHHHHccc
Confidence 345666777766666555422111 133555555566666666666666666666542 112233333333
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 002549 271 NVEKVKEISENMLKMGFGKDEMTY-NTIIHMYGKQGQHDVALQLYRDMKLSGRNPDVVTYTVLIDSLGKANKISEAANVM 349 (909)
Q Consensus 271 ~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 349 (909)
-+.+|.++-+.. +|..+++. ......+...|+++.|+.-|-+... ....+.+-.....+.+|+.++
T Consensus 689 af~kaielarfa----fp~evv~lee~wg~hl~~~~q~daainhfiea~~---------~~kaieaai~akew~kai~il 755 (1636)
T KOG3616|consen 689 AFGKAIELARFA----FPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANC---------LIKAIEAAIGAKEWKKAISIL 755 (1636)
T ss_pred HHHHHHHHHHhh----CcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh---------HHHHHHHHhhhhhhhhhHhHH
Confidence 344454443321 22222222 2233445566777777766654431 222345556677888888888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCC
Q 002549 350 SEMLDASVKPTLRTYSALICGYAKAGNRLEAEKTFYCMRRSGIRPDHLAYSVMLDIFLRFNETNKAMMLYQEMVSNGFTP 429 (909)
Q Consensus 350 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 429 (909)
+.+.+... -..-|..+...|...|+++.|+++|.+.- .++..|.+|.+.|+++.|.++-++.. |-..
T Consensus 756 dniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~kla~e~~--~~e~ 822 (1636)
T KOG3616|consen 756 DNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFKLAEECH--GPEA 822 (1636)
T ss_pred HHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHHHHHHHhc--Cchh
Confidence 88776532 23345666778888888888888885432 34566788888888888888777665 2233
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHhcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 002549 430 DQALYEIMIGVLGRENKGEEIRKVVRDMKELSGINMQEISSILVKGECYDHAAEILRSAIRNGIELDHEKLLSILSSYNV 509 (909)
Q Consensus 430 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~d~~~~~~l~~~~~~ 509 (909)
....|-+-..-+-+.|++.+|.+++-.+ ..|+....+|-+.|..+..+.+..+- ....-..|-..+..-+..
T Consensus 823 t~~~yiakaedldehgkf~eaeqlyiti-----~~p~~aiqmydk~~~~ddmirlv~k~---h~d~l~dt~~~f~~e~e~ 894 (1636)
T KOG3616|consen 823 TISLYIAKAEDLDEHGKFAEAEQLYITI-----GEPDKAIQMYDKHGLDDDMIRLVEKH---HGDHLHDTHKHFAKELEA 894 (1636)
T ss_pred HHHHHHHhHHhHHhhcchhhhhheeEEc-----cCchHHHHHHHhhCcchHHHHHHHHh---ChhhhhHHHHHHHHHHHh
Confidence 4455555556677788888887766332 23444445555555555554444332 111122344455556666
Q ss_pred cCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhccCCcccchhhHHHHHHHHHhcccHHHHHH
Q 002549 510 SGRHLEACELIEFVKQHASESTPPLTQAFIIMLCKAQKLDAALEEYSNAWGFGFFSKSKTMYESLIHSCEYNERFAEASQ 589 (909)
Q Consensus 510 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 589 (909)
.|+...|...|-.+. -+.+.+.+|...+-+++|.++-+. .| ..+.. -.+.....+.=--+.|..
T Consensus 895 ~g~lkaae~~flea~---------d~kaavnmyk~s~lw~dayriakt---eg--g~n~~--k~v~flwaksiggdaavk 958 (1636)
T KOG3616|consen 895 EGDLKAAEEHFLEAG---------DFKAAVNMYKASELWEDAYRIAKT---EG--GANAE--KHVAFLWAKSIGGDAAVK 958 (1636)
T ss_pred ccChhHHHHHHHhhh---------hHHHHHHHhhhhhhHHHHHHHHhc---cc--cccHH--HHHHHHHHHhhCcHHHHH
Confidence 677666665543322 234445566666666665444322 11 01111 111111222212233344
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhc
Q 002549 590 VFSDMRFYNIEPSEDLYRSMVVAYCKMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQR 668 (909)
Q Consensus 590 ~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 668 (909)
++.+. | .+...+...+..+.++-|..+-.-+.+. ....+...++..+...|++++|.+.|-++++.
T Consensus 959 llnk~---g------ll~~~id~a~d~~afd~afdlari~~k~----k~~~vhlk~a~~ledegk~edaskhyveaikl 1024 (1636)
T KOG3616|consen 959 LLNKH---G------LLEAAIDFAADNCAFDFAFDLARIAAKD----KMGEVHLKLAMFLEDEGKFEDASKHYVEAIKL 1024 (1636)
T ss_pred HHHhh---h------hHHHHhhhhhcccchhhHHHHHHHhhhc----cCccchhHHhhhhhhccchhhhhHhhHHHhhc
Confidence 43321 0 1222233344455555555554444332 23455666677777778888887777766654
No 64
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.55 E-value=2.3e-11 Score=113.70 Aligned_cols=223 Identities=12% Similarity=0.091 Sum_probs=114.1
Q ss_pred cCCHHHHHHHHHHhhccCCcccchhhHHHHHHHHHhcccHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHhhcCChhh
Q 002549 545 AQKLDAALEEYSNAWGFGFFSKSKTMYESLIHSCEYNERFAEASQVFSDMRFYNIEPS---EDLYRSMVVAYCKMDFPET 621 (909)
Q Consensus 545 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~l~~~~~~~~~~~~ 621 (909)
..+.++|+++|-.+.+.+ |.+..+-.+|...|-+.|..|.|+.+-+.+.+..--+. ......+..-|...|-+|.
T Consensus 48 s~Q~dKAvdlF~e~l~~d--~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED--PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hcCcchHHHHHHHHHhcC--chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 345555555555555543 44555555566666666666666666555543211111 1122334444555555555
Q ss_pred HHHHHHHHHHcCCCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCC----hHhHHHHHHHHHHcCCHHHHHHHH
Q 002549 622 AHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVD----RKVWNALIKAYAASGCYERARAVF 697 (909)
Q Consensus 622 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~ 697 (909)
|..+|..+...+ .-...+...|+..|-...+|++|+++-+++.+.+..+. ...|.-|...+....+.+.|..++
T Consensus 126 AE~~f~~L~de~--efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l 203 (389)
T COG2956 126 AEDIFNQLVDEG--EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELL 203 (389)
T ss_pred HHHHHHHHhcch--hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 555555554321 11234555566666666666666666666655433322 234445555555556667777777
Q ss_pred HHHHHcCCCCCcccHHHHHHHHHhcCchhhHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 002549 698 NTMMRDGPSPTVDSINGLLQALIVDGRLNELYVVIQELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYHGMKA 772 (909)
Q Consensus 698 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 772 (909)
.++++.+++ .+..--.+.+.....|+++.|++.++...+.+...-+.+...|..+|.+.|+.++....+..+.+
T Consensus 204 ~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~ 277 (389)
T COG2956 204 KKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME 277 (389)
T ss_pred HHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 777665554 44433444455555555555555555555544433344444444444444444444444444443
No 65
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.55 E-value=4.1e-09 Score=113.41 Aligned_cols=355 Identities=9% Similarity=-0.051 Sum_probs=186.5
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhccCCcccchhhHHHHH
Q 002549 496 DHEKLLSILSSYNVSGRHLEACELIEFVKQHASESTPPLTQAFIIMLCKAQKLDAALEEYSNAWGFGFFSKSKTMYESLI 575 (909)
Q Consensus 496 d~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li 575 (909)
+..+|+.+.- ....|++.-+...|-......|. ....+..+...+.+..+++-|...|.+..... |.+...|....
T Consensus 816 n~~~WnaLGV-lsg~gnva~aQHCfIks~~sep~-~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLd--P~nl~~WlG~A 891 (1238)
T KOG1127|consen 816 NEGLWNALGV-LSGIGNVACAQHCFIKSRFSEPT-CHCQWLNLGVLVLENQDFEHAEPAFSSVQSLD--PLNLVQWLGEA 891 (1238)
T ss_pred cHHHHHHHHH-hhccchhhhhhhhhhhhhhcccc-chhheeccceeEEecccHHHhhHHHHhhhhcC--chhhHHHHHHH
Confidence 4455555443 36667888887777666555444 45567777888889999999999999998876 88999998888
Q ss_pred HHHHhcccHHHHHHHHHHH----HhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCCchHHHHHHHHhhh
Q 002549 576 HSCEYNERFAEASQVFSDM----RFYNIEPSEDLYRSMVVAYCKMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGR 651 (909)
Q Consensus 576 ~~~~~~g~~~~A~~~~~~m----~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 651 (909)
......|+.-+++.+|..- ...|-.|+..-+..........|+.++-+...+.+
T Consensus 892 li~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki---------------------- 949 (1238)
T KOG1127|consen 892 LIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKI---------------------- 949 (1238)
T ss_pred HhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhh----------------------
Confidence 8888899999999988762 12344455555555555556666655433332211
Q ss_pred cCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCcccHH----HHHHHHHhcCchh
Q 002549 652 LKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRD-GPSPTVDSIN----GLLQALIVDGRLN 726 (909)
Q Consensus 652 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~----~l~~~~~~~g~~~ 726 (909)
..|.-.++..... .|.+..+|...+...-+.+.+..|.+...+.+.. ..+-+...|+ ...+.++..|.++
T Consensus 950 ----~sAs~al~~yf~~-~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe 1024 (1238)
T KOG1127|consen 950 ----SSASLALSYYFLG-HPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFE 1024 (1238)
T ss_pred ----hhhHHHHHHHHhc-CcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchh
Confidence 1122222232222 4555666666666666666666666666554321 0111222333 2334444455555
Q ss_pred hHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCch-HHHHHHHHHHHhccCchHHHHHHHHH
Q 002549 727 ELYVVIQELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYHGMKAA-GYFPT-MYLYRVMSGLFCKGKRVRDVEAMVSE 804 (909)
Q Consensus 727 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 804 (909)
.|..-+...-. ..+......-+.. .-.|+++++.+.|++...- .-..+ +.....++......+..+.|...+-+
T Consensus 1025 ~A~~a~~~~~~---evdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe 1100 (1238)
T KOG1127|consen 1025 SAKKASWKEWM---EVDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFE 1100 (1238)
T ss_pred hHhhhhcccch---hHHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHH
Confidence 44333322110 1111111111111 3356777777777777652 11122 23334444555566667777766666
Q ss_pred HHHCCCCCCHHhHHHHHHHhhccC---CHHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCChhhHHHHHHHHHHcCC
Q 002549 805 MKEAGFKPDLSIWNSMLKLYTGIE---DFKKTIQVYQEIQEADLQPDE-DSFNTLIIMYCRDCRPEEGLSLMHEMRKLGL 880 (909)
Q Consensus 805 ~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 880 (909)
.... -+|+..+...+...+.-.. ...-+++-+.+..+. .--. ..-...-..|.+.|+-.-..+.+++..- .
T Consensus 1101 ~~~l-s~~~~~sll~L~A~~ild~da~~ssaileel~kl~k~--e~~~~~~~ll~e~i~~~~~r~~~vk~~~qr~~h--~ 1175 (1238)
T KOG1127|consen 1101 VKSL-SKVQASSLLPLPAVYILDADAHGSSAILEELEKLLKL--EWFCWPPGLLKELIYALQGRSVAVKKQIQRAVH--S 1175 (1238)
T ss_pred HHHh-CccchhhHHHHHHHHHHhhhhhhhHHHHHHHHHhhhh--HHhccChhHHHHHHHHHhhhhHHHHHHHHHHHh--c
Confidence 5542 2444444444433332222 222222333332221 0001 1111223456666776666666666653 2
Q ss_pred CC-ChhhHHHH
Q 002549 881 EP-KLDTYKSL 890 (909)
Q Consensus 881 ~p-~~~~~~~l 890 (909)
.| |+..|..|
T Consensus 1176 ~P~~~~~WslL 1186 (1238)
T KOG1127|consen 1176 NPGDPALWSLL 1186 (1238)
T ss_pred CCCChHHHHHH
Confidence 33 34455444
No 66
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.53 E-value=3.3e-11 Score=112.72 Aligned_cols=292 Identities=12% Similarity=0.081 Sum_probs=221.9
Q ss_pred HhcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCC--chHHHHHHHHhhhcCChH
Q 002549 579 EYNERFAEASQVFSDMRFYNIEPSEDLYRSMVVAYCKMDFPETAHFIADQAEKKGIPFED--LSIYVDIIDAYGRLKLWQ 656 (909)
Q Consensus 579 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~ 656 (909)
.-..+.++|.++|-+|.+.. +-..++-.++.+.+.+.|..|.|+.+++.++...--+.. ..+...|+.-|...|-++
T Consensus 46 LLs~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~D 124 (389)
T COG2956 46 LLSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLD 124 (389)
T ss_pred HhhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhh
Confidence 34578899999999998632 223344567888999999999999999998863211111 556778999999999999
Q ss_pred HHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCccc----HHHHHHHHHhcCchhhHHHHH
Q 002549 657 KAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDS----INGLLQALIVDGRLNELYVVI 732 (909)
Q Consensus 657 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~g~~~~A~~~~ 732 (909)
.|+.+|..+.+. ...-..+...|+..|....+|++|+++.++..+.++.+..+- |--+...+....+.+.|..++
T Consensus 125 RAE~~f~~L~de-~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l 203 (389)
T COG2956 125 RAEDIFNQLVDE-GEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELL 203 (389)
T ss_pred HHHHHHHHHhcc-hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 999999999875 233466788899999999999999999999999876654322 333334444567889999999
Q ss_pred HHHHhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccCchHHHHHHHHHHHHCCCCC
Q 002549 733 QELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYHGMKAAGYFPTMYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKP 812 (909)
Q Consensus 733 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 812 (909)
.+..+.+.+--..++ .+.+.....|+++.|.+.++.+.+.+..--..+...|..+|...|+.++.+..+..+.+. .+
T Consensus 204 ~kAlqa~~~cvRAsi-~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~--~~ 280 (389)
T COG2956 204 KKALQADKKCVRASI-ILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET--NT 280 (389)
T ss_pred HHHHhhCccceehhh-hhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--cC
Confidence 999887754444443 477889999999999999999999775556778899999999999999999999999884 44
Q ss_pred CHHhHHHHHHHhhccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH---hcCChhhHHHHHHHHHH
Q 002549 813 DLSIWNSMLKLYTGIEDFKKTIQVYQEIQEADLQPDEDSFNTLIIMYC---RDCRPEEGLSLMHEMRK 877 (909)
Q Consensus 813 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~---~~g~~~~A~~~~~~~~~ 877 (909)
+...-..+...--...-.+.|.....+-+. -+|+...+..++.... ..|++.+.+.++++|+.
T Consensus 281 g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~--r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 281 GADAELMLADLIELQEGIDAAQAYLTRQLR--RKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred CccHHHHHHHHHHHhhChHHHHHHHHHHHh--hCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 444444444443444445666666666655 5999988888886554 34678888889999885
No 67
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=2.2e-10 Score=110.64 Aligned_cols=269 Identities=11% Similarity=0.052 Sum_probs=170.9
Q ss_pred HHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHH
Q 002549 603 EDLYRSMVVAYCKMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIK 682 (909)
Q Consensus 603 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 682 (909)
...+..+...+...|+.++|+..|++... ++|.........+..+...|+++.-..+...+... ......-|-.-+.
T Consensus 232 vhLl~~lak~~~~~Gdn~~a~~~Fe~~~~--~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~-~~~ta~~wfV~~~ 308 (564)
T KOG1174|consen 232 EHLMMALGKCLYYNGDYFQAEDIFSSTLC--ANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAK-VKYTASHWFVHAQ 308 (564)
T ss_pred HHHHHHHhhhhhhhcCchHHHHHHHHHhh--CChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhh-hhcchhhhhhhhh
Confidence 33344444444444444444444444433 45555555555556666666666666666655543 2223333444444
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCchhhHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCCHHH
Q 002549 683 AYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQALIVDGRLNELYVVIQELQDMDFKISKSSILLMLDAFARSGNIFE 762 (909)
Q Consensus 683 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 762 (909)
.....++++.|+.+-++.++.++. ++..|-.-++.+.+.|+.++|.=.|...+... +.+-..|..|+..|...|+..+
T Consensus 309 ~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kE 386 (564)
T KOG1174|consen 309 LLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKE 386 (564)
T ss_pred hhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHH
Confidence 445667888888888888887666 66666666677778888888887777766543 2334667777777777777777
Q ss_pred HHHHHHHHHhcCCCchHHHHHHHH-HHHh-ccCchHHHHHHHHHHHHCCCCCCH-HhHHHHHHHhhccCCHHHHHHHHHH
Q 002549 763 VKKIYHGMKAAGYFPTMYLYRVMS-GLFC-KGKRVRDVEAMVSEMKEAGFKPDL-SIWNSMLKLYTGIEDFKKTIQVYQE 839 (909)
Q Consensus 763 a~~~~~~~~~~~~~p~~~~~~~l~-~~~~-~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~ 839 (909)
|.-.-+...+. ++-+..+...++ ..+. ...--++|..++++.++ +.|+- ...+.+...|...|..+.++.++++
T Consensus 387 A~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~--~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~ 463 (564)
T KOG1174|consen 387 ANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK--INPIYTPAVNLIAELCQVEGPTKDIIKLLEK 463 (564)
T ss_pred HHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc--cCCccHHHHHHHHHHHHhhCccchHHHHHHH
Confidence 77666665542 112223333221 1111 22234678888888876 67776 4566667777788888888888888
Q ss_pred HHHcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCC
Q 002549 840 IQEADLQPDEDSFNTLIIMYCRDCRPEEGLSLMHEMRKLGLEPK 883 (909)
Q Consensus 840 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 883 (909)
.+. ..||..-.+.|++.+...+.+.+|.+.|..+. .+.|+
T Consensus 464 ~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~AL--r~dP~ 503 (564)
T KOG1174|consen 464 HLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKAL--RQDPK 503 (564)
T ss_pred HHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHH--hcCcc
Confidence 887 78888888888888888888888888888877 44555
No 68
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=9.2e-10 Score=106.50 Aligned_cols=272 Identities=11% Similarity=0.028 Sum_probs=162.7
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHhhccCCcccchhhHHHHHHHHHhcccHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 002549 531 TPPLTQAFIIMLCKAQKLDAALEEYSNAWGFGFFSKSKTMYESLIHSCEYNERFAEASQVFSDMRFYNIEPSEDLYRSMV 610 (909)
Q Consensus 531 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 610 (909)
+..+...+...+...|+.++|+..|++....+ |.+..........+.+.|+.+.-..+...+.... .-....|-.-+
T Consensus 231 NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d--py~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~ 307 (564)
T KOG1174|consen 231 NEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN--PDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHA 307 (564)
T ss_pred cHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC--hhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhh
Confidence 44455556666666666666666666665544 4344444444444555566655555554443211 01111122222
Q ss_pred HHHhhcCChhhHHHHHHHHHHcCCCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCH
Q 002549 611 VAYCKMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCY 690 (909)
Q Consensus 611 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 690 (909)
.......+++.|..+-.+.+. .+|.+...+..-++++...|+.++|.-.|+.+... -|.+..+|.-|+.+|...|++
T Consensus 308 ~~l~~~K~~~rAL~~~eK~I~--~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L-ap~rL~~Y~GL~hsYLA~~~~ 384 (564)
T KOG1174|consen 308 QLLYDEKKFERALNFVEKCID--SEPRNHEALILKGRLLIALERHTQAVIAFRTAQML-APYRLEIYRGLFHSYLAQKRF 384 (564)
T ss_pred hhhhhhhhHHHHHHHHHHHhc--cCcccchHHHhccHHHHhccchHHHHHHHHHHHhc-chhhHHHHHHHHHHHHhhchH
Confidence 223334455556555555554 55556666666666666666666666666665544 344556666666666666666
Q ss_pred HHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCchhhHHHHHHHHHhCCCCccHHHHHHHHHHHH-hcCCHHHHHHHHHH
Q 002549 691 ERARAVFNTMMRDGPSPTVDSINGLLQALIVDGRLNELYVVIQELQDMDFKISKSSILLMLDAFA-RSGNIFEVKKIYHG 769 (909)
Q Consensus 691 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~a~~~~~~ 769 (909)
.+|.-+.+...+.-+. +..++..++ ..+|. ...--++|.+++++
T Consensus 385 kEA~~~An~~~~~~~~-sA~~LtL~g----------------------------------~~V~~~dp~~rEKAKkf~ek 429 (564)
T KOG1174|consen 385 KEANALANWTIRLFQN-SARSLTLFG----------------------------------TLVLFPDPRMREKAKKFAEK 429 (564)
T ss_pred HHHHHHHHHHHHHhhc-chhhhhhhc----------------------------------ceeeccCchhHHHHHHHHHh
Confidence 6665555555443222 222222211 01111 11224678888888
Q ss_pred HHhcCCCch-HHHHHHHHHHHhccCchHHHHHHHHHHHHCCCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHcCCCCC
Q 002549 770 MKAAGYFPT-MYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDLSIWNSMLKLYTGIEDFKKTIQVYQEIQEADLQPD 848 (909)
Q Consensus 770 ~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 848 (909)
.+.. .|+ ....+.+...+...|+..+++.++++.+. ..||...-+.|+..+...+.+++|.+.|..++. ++|+
T Consensus 430 ~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr--~dP~ 503 (564)
T KOG1174|consen 430 SLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR--QDPK 503 (564)
T ss_pred hhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCcc
Confidence 7763 343 34556778888899999999999999987 578999999999999999999999999999999 8996
Q ss_pred h
Q 002549 849 E 849 (909)
Q Consensus 849 ~ 849 (909)
+
T Consensus 504 ~ 504 (564)
T KOG1174|consen 504 S 504 (564)
T ss_pred c
Confidence 5
No 69
>PRK12370 invasion protein regulator; Provisional
Probab=99.48 E-value=1e-11 Score=137.75 Aligned_cols=247 Identities=11% Similarity=0.045 Sum_probs=167.2
Q ss_pred hhhHHHHHHHHHHcCCCCCCchHHHHHHHHhhh---------cCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCC
Q 002549 619 PETAHFIADQAEKKGIPFEDLSIYVDIIDAYGR---------LKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGC 689 (909)
Q Consensus 619 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 689 (909)
.++|+..++++++ ++|++..++..++.++.. .+++++|...++++++. .|.+..++..++.++...|+
T Consensus 277 ~~~A~~~~~~Al~--ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l-dP~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 277 LQQALKLLTQCVN--MSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL-DHNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHh--cCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHccC
Confidence 3566666666665 566666666666655432 23467888888888776 56677778788888888888
Q ss_pred HHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCchhhHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 002549 690 YERARAVFNTMMRDGPSPTVDSINGLLQALIVDGRLNELYVVIQELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYHG 769 (909)
Q Consensus 690 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 769 (909)
+++|...|+++++.+|. +...+..++.++...|++++|+..++++.+.+..+.. .+..++..+...|++++|...+++
T Consensus 354 ~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~-~~~~~~~~~~~~g~~eeA~~~~~~ 431 (553)
T PRK12370 354 YIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAA-AGITKLWITYYHTGIDDAIRLGDE 431 (553)
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChh-hHHHHHHHHHhccCHHHHHHHHHH
Confidence 88888888888887766 5666777788888888888888888888776543222 222334456667888888888888
Q ss_pred HHhcCCCchHHHHHHHHHHHhccCchHHHHHHHHHHHHCCCCCCH-HhHHHHHHHhhccCCHHHHHHHHHHHHHc-CCCC
Q 002549 770 MKAAGYFPTMYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDL-SIWNSMLKLYTGIEDFKKTIQVYQEIQEA-DLQP 847 (909)
Q Consensus 770 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p 847 (909)
+.+...+-++..+..+..+|...|++++|.+.++++.. ..|+. ...+.+...|...| ++|...++++.+. ...|
T Consensus 432 ~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~ 507 (553)
T PRK12370 432 LRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEIST--QEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRID 507 (553)
T ss_pred HHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh--ccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhh
Confidence 77643122455567778888888999999999888765 35554 34555555667766 4777777777652 2233
Q ss_pred ChhhHHHHHHHHHhcCChhhHHHHHHHHHH
Q 002549 848 DEDSFNTLIIMYCRDCRPEEGLSLMHEMRK 877 (909)
Q Consensus 848 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 877 (909)
....+ +...|.-.|+.+.+..+ +++.+
T Consensus 508 ~~~~~--~~~~~~~~g~~~~~~~~-~~~~~ 534 (553)
T PRK12370 508 NNPGL--LPLVLVAHGEAIAEKMW-NKFKN 534 (553)
T ss_pred cCchH--HHHHHHHHhhhHHHHHH-HHhhc
Confidence 33233 55666667777777666 77654
No 70
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.48 E-value=2.2e-10 Score=111.06 Aligned_cols=291 Identities=14% Similarity=0.120 Sum_probs=199.9
Q ss_pred cccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCC-CCchHHHHHHHHhhhcCChHHHH
Q 002549 581 NERFAEASQVFSDMRFYNIEPSEDLYRSMVVAYCKMDFPETAHFIADQAEKKGIPF-EDLSIYVDIIDAYGRLKLWQKAE 659 (909)
Q Consensus 581 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~ 659 (909)
.|+|..|..+..+-.+.+..| ...|.....+-...|+.+.+-.++.++.+ ..+ +...+.......+...|+++.|.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae--~~~~~~l~v~ltrarlll~~~d~~aA~ 173 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAE--LAGDDTLAVELTRARLLLNRRDYPAAR 173 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhc--cCCCchHHHHHHHHHHHHhCCCchhHH
Confidence 467777777666655544333 22344445556667777777777777665 222 23555666667778888888888
Q ss_pred HHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCc-------ccHHHHHHHHHhcCchhhHHHHH
Q 002549 660 SLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTV-------DSINGLLQALIVDGRLNELYVVI 732 (909)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~ 732 (909)
.-+.++.+. .|.++.+......+|.+.|++.....++.++.+.+.-.+. .+|..+++-....+..+.-...+
T Consensus 174 ~~v~~ll~~-~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W 252 (400)
T COG3071 174 ENVDQLLEM-TPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWW 252 (400)
T ss_pred HHHHHHHHh-CcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHH
Confidence 888888776 4667788888888888888888888888888887654332 34555554444444444444455
Q ss_pred HHHHhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccCchHHHHHHHHHHHHCCCCC
Q 002549 733 QELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYHGMKAAGYFPTMYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKP 812 (909)
Q Consensus 733 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 812 (909)
+..... .+.++....+++.-+.+.|+.++|.++..+..+++..|+...+ -...+-++.+.-++..++..+. .+-
T Consensus 253 ~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~----~~~l~~~d~~~l~k~~e~~l~~-h~~ 326 (400)
T COG3071 253 KNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRL----IPRLRPGDPEPLIKAAEKWLKQ-HPE 326 (400)
T ss_pred HhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHH----HhhcCCCCchHHHHHHHHHHHh-CCC
Confidence 554332 2445556666777788888889998888888888777772221 2234667777777777777663 233
Q ss_pred CHHhHHHHHHHhhccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCC
Q 002549 813 DLSIWNSMLKLYTGIEDFKKTIQVYQEIQEADLQPDEDSFNTLIIMYCRDCRPEEGLSLMHEMRKLGLEPK 883 (909)
Q Consensus 813 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 883 (909)
+.-.+.+|+..|.+++.+.+|.++++.+++ ..|+..+|..+++++.+.|++++|.+.+++....-..|+
T Consensus 327 ~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~ 395 (400)
T COG3071 327 DPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREALLLTRQPN 395 (400)
T ss_pred ChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCC
Confidence 446788888888888999999999998888 888888899999999999999999888888775444444
No 71
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.48 E-value=1.4e-10 Score=112.38 Aligned_cols=281 Identities=12% Similarity=0.087 Sum_probs=224.6
Q ss_pred cCChhhHHHHHHHHHHcCCCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHH
Q 002549 616 MDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARA 695 (909)
Q Consensus 616 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 695 (909)
.|++..|.....+..+++- .....+..-+.+--..|+.+.|-.++.++.+....+...+.-.........|+++.|..
T Consensus 97 eG~~~qAEkl~~rnae~~e--~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGE--QPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred cCcHHHHHHHHHHhhhcCc--chHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 5899999999988877543 34556666677788889999999999999886445556677777888999999999999
Q ss_pred HHHHHHHcCCCCCcccHHHHHHHHHhcCchhhHHHHHHHHHhCCCCccH-------HHHHHHHHHHHhcCCHHHHHHHHH
Q 002549 696 VFNTMMRDGPSPTVDSINGLLQALIVDGRLNELYVVIQELQDMDFKISK-------SSILLMLDAFARSGNIFEVKKIYH 768 (909)
Q Consensus 696 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~a~~~~~ 768 (909)
-..++.+.+|. +........++|.+.|+|.+...++.++.+.+.-.+. .++..+++-....+..+.-...|+
T Consensus 175 ~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 175 NVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 99999998887 6677888899999999999999999999998865443 355556665555555555455555
Q ss_pred HHHhcCCCchHHHHHHHHHHHhccCchHHHHHHHHHHHHCCCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHcCCCCC
Q 002549 769 GMKAAGYFPTMYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDLSIWNSMLKLYTGIEDFKKTIQVYQEIQEADLQPD 848 (909)
Q Consensus 769 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 848 (909)
..... ..-++....+++.-+.++|..++|.+++.+.+++...|.. .....+.+-++...=++..++.++ ..|+
T Consensus 254 ~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~--~h~~ 326 (400)
T COG3071 254 NQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLK--QHPE 326 (400)
T ss_pred hccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHHHHHH--hCCC
Confidence 55432 2235667778899999999999999999999987666651 222345667888888888888887 5664
Q ss_pred -hhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHhhc
Q 002549 849 -EDSFNTLIIMYCRDCRPEEGLSLMHEMRKLGLEPKLDTYKSLISAFGKQQQLEQAEELLK 908 (909)
Q Consensus 849 -~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 908 (909)
+..+.+|+..|.+.+.|.+|.++|+... ...|+..+|..++++|-+.|+.++|....+
T Consensus 327 ~p~L~~tLG~L~~k~~~w~kA~~~leaAl--~~~~s~~~~~~la~~~~~~g~~~~A~~~r~ 385 (400)
T COG3071 327 DPLLLSTLGRLALKNKLWGKASEALEAAL--KLRPSASDYAELADALDQLGEPEEAEQVRR 385 (400)
T ss_pred ChhHHHHHHHHHHHhhHHHHHHHHHHHHH--hcCCChhhHHHHHHHHHHcCChHHHHHHHH
Confidence 4778899999999999999999999877 568899999999999999999999987643
No 72
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.47 E-value=4.7e-09 Score=108.04 Aligned_cols=458 Identities=13% Similarity=0.111 Sum_probs=279.3
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHhccc
Q 002549 399 YSVMLDIFLRFNETNKAMMLYQEMVSNGFTPD-QALYEIMIGVLGRENKGEEIRKVVRDMKELSGINMQEISSILVKGEC 477 (909)
Q Consensus 399 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (909)
|..++.+| ..+++...++..+.+++. .|+ ..+.....-.++..|+.++|....+.....+
T Consensus 11 F~~~lk~y-E~kQYkkgLK~~~~iL~k--~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d---------------- 71 (700)
T KOG1156|consen 11 FRRALKCY-ETKQYKKGLKLIKQILKK--FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND---------------- 71 (700)
T ss_pred HHHHHHHH-HHHHHHhHHHHHHHHHHh--CCccchhHHhccchhhcccchHHHHHHHHHHhccC----------------
Confidence 44444443 456666677766666653 222 2233222224555666666666655444321
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 002549 478 YDHAAEILRSAIRNGIELDHEKLLSILSSYNVSGRHLEACELIEFVKQHASESTPPLTQAFIIMLCKAQKLDAALEEYSN 557 (909)
Q Consensus 478 ~~~a~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 557 (909)
.-..+.|-.+.-.+....++++|++.+..++..+++ +..++..+...-.+.++++.....-..
T Consensus 72 ----------------~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~d-N~qilrDlslLQ~QmRd~~~~~~tr~~ 134 (700)
T KOG1156|consen 72 ----------------LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKD-NLQILRDLSLLQIQMRDYEGYLETRNQ 134 (700)
T ss_pred ----------------cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 122334444444445555666666666666665554 345566666666677777777666666
Q ss_pred hhccCCcccchhhHHHHHHHHHhcccHHHHHHHHHHHHhCC-CCCCHHHHHH------HHHHHhhcCChhhHHHHHHHHH
Q 002549 558 AWGFGFFSKSKTMYESLIHSCEYNERFAEASQVFSDMRFYN-IEPSEDLYRS------MVVAYCKMDFPETAHFIADQAE 630 (909)
Q Consensus 558 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~------l~~~~~~~~~~~~a~~~~~~~~ 630 (909)
..+.. |..-..|..++.+..-.|++..|..+++...+.- ..|+...+.. -.....+.|.++.|.+.+..-.
T Consensus 135 LLql~--~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e 212 (700)
T KOG1156|consen 135 LLQLR--PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNE 212 (700)
T ss_pred HHHhh--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhh
Confidence 66654 6677889999999999999999999998886543 2455544432 2234566778787777665443
Q ss_pred HcCCCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHH-HHHHHHHHcCCCCCc
Q 002549 631 KKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERAR-AVFNTMMRDGPSPTV 709 (909)
Q Consensus 631 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~~~~~~ 709 (909)
.. ..+.......-+..+.+.+++++|..++..++.. .|.+...|..+..++..-.+.-+++ .+|....+..+...
T Consensus 213 ~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r-nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e- 288 (700)
T KOG1156|consen 213 KQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER-NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHE- 288 (700)
T ss_pred hH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh-CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccc-
Confidence 31 1223344455678899999999999999999987 4544444555555654444444555 66666655433311
Q ss_pred ccHHHHHHHHHhcCch-hhHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCCHHH----HHHHHHHHHhcC----------
Q 002549 710 DSINGLLQALIVDGRL-NELYVVIQELQDMDFKISKSSILLMLDAFARSGNIFE----VKKIYHGMKAAG---------- 774 (909)
Q Consensus 710 ~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----a~~~~~~~~~~~---------- 774 (909)
+...+-.-.....+. +..-+++..+.+.|+++-...+.++ |-.-...+- +..+.+.+...|
T Consensus 289 -~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SL---yk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~ 364 (700)
T KOG1156|consen 289 -CPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSL---YKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQ 364 (700)
T ss_pred -cchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHH---HhchhHhHHHHHHHHHHHhhcccccCCCccccccc
Confidence 111111112222333 4445677788888877655444433 322111111 112222221111
Q ss_pred CCchHHHHH--HHHHHHhccCchHHHHHHHHHHHHCCCCCCHH-hHHHHHHHhhccCCHHHHHHHHHHHHHcCCCCChhh
Q 002549 775 YFPTMYLYR--VMSGLFCKGKRVRDVEAMVSEMKEAGFKPDLS-IWNSMLKLYTGIEDFKKTIQVYQEIQEADLQPDEDS 851 (909)
Q Consensus 775 ~~p~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 851 (909)
-+|+...|. .++..+.+.|+++.|+..++.++. .+|..+ -|..-...+.+.|++++|...++++.+.+ .||...
T Consensus 365 E~PttllWt~y~laqh~D~~g~~~~A~~yId~AId--HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~I 441 (700)
T KOG1156|consen 365 EPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID--HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAI 441 (700)
T ss_pred CCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc--cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHH
Confidence 145666555 456778899999999999999996 577663 45566778899999999999999999833 334443
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChh--------hHHHH--HHHHhccCCHHHHHHhh
Q 002549 852 FNTLIIMYCRDCRPEEGLSLMHEMRKLGLEPKLD--------TYKSL--ISAFGKQQQLEQAEELL 907 (909)
Q Consensus 852 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~--------~~~~l--~~~~~~~g~~~~A~~~~ 907 (909)
-..-+.-..+..+.++|.++.....+.|. +.. .|-.+ +.+|.++|++.+|.+=+
T Consensus 442 NsKcAKYmLrAn~i~eA~~~~skFTr~~~--~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkf 505 (700)
T KOG1156|consen 442 NSKCAKYMLRANEIEEAEEVLSKFTREGF--GAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKF 505 (700)
T ss_pred HHHHHHHHHHccccHHHHHHHHHhhhccc--chhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHH
Confidence 33667777889999999999999887654 211 12222 66789999999998754
No 73
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.45 E-value=1.3e-08 Score=109.57 Aligned_cols=599 Identities=9% Similarity=-0.018 Sum_probs=324.2
Q ss_pred CHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 002549 236 LFEKAEQLFKELESKGFFPDAVTYNSLLYAFAREGNVEKVKEISENMLKMGFGKDEMTYNTIIHMYGKQGQHDVALQLYR 315 (909)
Q Consensus 236 ~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 315 (909)
+...|+..|-+..+.... -...|..|...|+..-+...|.+.|+...+.+ ..+...+....+.|+...+++.|..+.-
T Consensus 473 ~~~~al~ali~alrld~~-~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 473 NSALALHALIRALRLDVS-LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred hHHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 356666666555554322 23456777777777667777888887777665 4566777777888888888888877733
Q ss_pred HHHhcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 002549 316 DMKLSGR-NPDVVTYTVLIDSLGKANKISEAANVMSEMLDASVKPTLRTYSALICGYAKAGNRLEAEKTFYCMRRSGIRP 394 (909)
Q Consensus 316 ~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 394 (909)
...++.. ..-...|....-.|.+.++...|+.-|+......+ -|...|..+..+|...|++..|.++|.+.... .|
T Consensus 551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dP-kD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP 627 (1238)
T KOG1127|consen 551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDP-KDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RP 627 (1238)
T ss_pred HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCc-hhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--Cc
Confidence 3322210 01112344444456677778888888877776543 26777888888888888888888888777663 33
Q ss_pred CHHHHHH--HHHHHHHcCCHhHHHHHHHHHHHCC------CCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCChH
Q 002549 395 DHLAYSV--MLDIFLRFNETNKAMMLYQEMVSNG------FTPDQALYEIMIGVLGRENKGEEIRKVVRDMKELSGINMQ 466 (909)
Q Consensus 395 ~~~~~~~--l~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 466 (909)
+. .|.. .....+..|.+.+|...+....... ..--..++..+...+.-.|-...+..++++.
T Consensus 628 ~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eks--------- 697 (1238)
T KOG1127|consen 628 LS-KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKS--------- 697 (1238)
T ss_pred Hh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHH---------
Confidence 32 2221 2223456677777777777665420 0000111111111222222222233333222
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHH---HH---HH-HHHHHHhcCCCCChhhHHHHH
Q 002549 467 EISSILVKGECYDHAAEILRSAIRNGIELDHEKLLSILSSYNVSGRHL---EA---CE-LIEFVKQHASESTPPLTQAFI 539 (909)
Q Consensus 467 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~~~~---~a---~~-~~~~~~~~~~~~~~~~~~~l~ 539 (909)
++.+.-.+......+...|..+..+|.---..+ -. .. ++.+....+..++..+.
T Consensus 698 ---------------ie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l---- 758 (1238)
T KOG1127|consen 698 ---------------IESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLL---- 758 (1238)
T ss_pred ---------------HHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHH----
Confidence 222222221111111111111111110000000 00 00 00011111111111100
Q ss_pred HHHHhcCCHHHHHHHHHHhhccCCcccchhhHHHHHHHHHh----c---c-cHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 002549 540 IMLCKAQKLDAALEEYSNAWGFGFFSKSKTMYESLIHSCEY----N---E-RFAEASQVFSDMRFYNIEPSEDLYRSMVV 611 (909)
Q Consensus 540 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~---g-~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 611 (909)
--+.+.+-..... ..++.+|..++..|.+ . + +...|+..+...++. ...+..+|+.+.-
T Consensus 759 ---------~Lg~~c~~~hlsl---~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L-~ann~~~WnaLGV 825 (1238)
T KOG1127|consen 759 ---------FLGYECGIAHLSL---AIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSL-CANNEGLWNALGV 825 (1238)
T ss_pred ---------HHHHHHhhHHHHH---hhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHH-hhccHHHHHHHHH
Confidence 0111122122211 2235667666655544 1 1 223566667665542 1234455555544
Q ss_pred HHhhcCChhhHHHHHHHHHHcCCCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHH
Q 002549 612 AYCKMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYE 691 (909)
Q Consensus 612 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 691 (909)
. ...|++.-+..-|-+... ..|.....|.+++..+....+++.|...|..+... .|.+...|--........|+.-
T Consensus 826 l-sg~gnva~aQHCfIks~~--sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSL-dP~nl~~WlG~Ali~eavG~ii 901 (1238)
T KOG1127|consen 826 L-SGIGNVACAQHCFIKSRF--SEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSL-DPLNLVQWLGEALIPEAVGRII 901 (1238)
T ss_pred h-hccchhhhhhhhhhhhhh--ccccchhheeccceeEEecccHHHhhHHHHhhhhc-CchhhHHHHHHHHhHHHHHHHH
Confidence 3 555677766666655554 67888899999999999999999999999998876 6777788876666777789888
Q ss_pred HHHHHHHHHHHc----CCCCCcccHHHHHHHHHhcCchhhHHHHHHHHHhC---------CCCccHHHHHHHHHHHHhcC
Q 002549 692 RARAVFNTMMRD----GPSPTVDSINGLLQALIVDGRLNELYVVIQELQDM---------DFKISKSSILLMLDAFARSG 758 (909)
Q Consensus 692 ~A~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~~~~~l~~~~~~~g 758 (909)
++..+|..--+. |--|+..-|.........+|++++-+...+.+-.. +.+.....|...+....+.+
T Consensus 902 ~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ 981 (1238)
T KOG1127|consen 902 ERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLE 981 (1238)
T ss_pred HHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHH
Confidence 888888873332 22233333433334445667666655444443322 22334556666677777888
Q ss_pred CHHHHHHHHHHHHhc-CCCchHHHHH----HHHHHHhccCchHHHHHHHHHHHHCCCCCCHHhHHHHHHHhhccCCHHHH
Q 002549 759 NIFEVKKIYHGMKAA-GYFPTMYLYR----VMSGLFCKGKRVRDVEAMVSEMKEAGFKPDLSIWNSMLKLYTGIEDFKKT 833 (909)
Q Consensus 759 ~~~~a~~~~~~~~~~-~~~p~~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 833 (909)
.+.+|..+..+.... ...-+...|+ .....++..|.++.|...+..... ..|..+-..-+ +....|+++++
T Consensus 982 ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~---evdEdi~gt~l-~lFfkndf~~s 1057 (1238)
T KOG1127|consen 982 EYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWM---EVDEDIRGTDL-TLFFKNDFFSS 1057 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccch---hHHHHHhhhhH-HHHHHhHHHHH
Confidence 888888887776430 1112233333 445566677777766554433211 11221111111 22557899999
Q ss_pred HHHHHHHHHcCCCCCh----hhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHH
Q 002549 834 IQVYQEIQEADLQPDE----DSFNTLIIMYCRDCRPEEGLSLMHEMRKLGLEPKLDTYKSLIS 892 (909)
Q Consensus 834 ~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 892 (909)
++.|++++. +.-+. .....++++....+..+.|...+-+.... ..|+....-++..
T Consensus 1058 l~~fe~aLs--is~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~l-s~~~~~sll~L~A 1117 (1238)
T KOG1127|consen 1058 LEFFEQALS--ISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKSL-SKVQASSLLPLPA 1117 (1238)
T ss_pred HHHHHHHhh--hcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHHh-CccchhhHHHHHH
Confidence 999999998 44433 23446677888888889999888777653 2444444444433
No 74
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.44 E-value=1.7e-09 Score=111.22 Aligned_cols=419 Identities=15% Similarity=0.131 Sum_probs=280.1
Q ss_pred cccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 002549 475 GECYDHAAEILRSAIRNGIELDHEKLLSILSSYNVSGRHLEACELIEFVKQHASESTPPLTQAFIIMLCKAQKLDAALEE 554 (909)
Q Consensus 475 ~~~~~~a~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 554 (909)
.++|...+...+.+++ ..+....++....-.+...|+-++|.......++.++. +...|..++..+....++++|++.
T Consensus 20 ~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~dK~Y~eaiKc 97 (700)
T KOG1156|consen 20 TKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSDKKYDEAIKC 97 (700)
T ss_pred HHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhhhhHHHHHHH
Confidence 3556666666666665 33334445555555667789999999998888876554 567889899999999999999999
Q ss_pred HHHhhccCCcccchhhHHHHHHHHHhcccHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhhcCChhhHHHHHHHHHHcC
Q 002549 555 YSNAWGFGFFSKSKTMYESLIHSCEYNERFAEASQVFSDMRFYNIEPS-EDLYRSMVVAYCKMDFPETAHFIADQAEKKG 633 (909)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 633 (909)
|+++...+ |.|...|.-+...-.+.|+++.....-....+. .|. ...|..+..+..-.|+...|..+.+......
T Consensus 98 y~nAl~~~--~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql--~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~ 173 (700)
T KOG1156|consen 98 YRNALKIE--KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL--RPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQ 173 (700)
T ss_pred HHHHHhcC--CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999987 889999998888888889988888777776653 444 4557777888888999999999999888754
Q ss_pred C-CCCC-----chHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 002549 634 I-PFED-----LSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSP 707 (909)
Q Consensus 634 ~-~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 707 (909)
. .|+. ............+.|..++|.+.+...... +-.....-..-...+.+.+++++|..++...+..+|+
T Consensus 174 ~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPd- 251 (700)
T KOG1156|consen 174 NTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPD- 251 (700)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCch-
Confidence 3 2222 122223345567778888888877765433 2222233344567788899999999999999996655
Q ss_pred CcccHHHHHHHHHhcCchhhHH-HHHHHHHhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHH
Q 002549 708 TVDSINGLLQALIVDGRLNELY-VVIQELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYHGMKAAGYFPTMYLYRVMS 786 (909)
Q Consensus 708 ~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 786 (909)
+...|..+..++.+--+.-+++ .+|....+.-++..... ..=++......-.+...+++..+.+.|+++-... +.
T Consensus 252 n~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~-Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~d---l~ 327 (700)
T KOG1156|consen 252 NLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPR-RLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKD---LR 327 (700)
T ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccch-hccHHHhCcchhHHHHHHHHHHHhhcCCCchhhh---hH
Confidence 5555555556665333334444 66666655433222111 1111222223334455667777777887653332 33
Q ss_pred HHHhccCchHHHHHHHHHHHH--CC------------CCCCHHhH--HHHHHHhhccCCHHHHHHHHHHHHHcCCCCCh-
Q 002549 787 GLFCKGKRVRDVEAMVSEMKE--AG------------FKPDLSIW--NSMLKLYTGIEDFKKTIQVYQEIQEADLQPDE- 849 (909)
Q Consensus 787 ~~~~~~g~~~~A~~~~~~~~~--~~------------~~p~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~- 849 (909)
..|-.-.+.+=-+++...+.. .| -+|....| ..++.-+-+.|+++.|..+++.++. -.|..
T Consensus 328 SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AId--HTPTli 405 (700)
T KOG1156|consen 328 SLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID--HTPTLI 405 (700)
T ss_pred HHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc--cCchHH
Confidence 333222222211222222211 01 14555444 4456667788999999999999999 78865
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHhhc
Q 002549 850 DSFNTLIIMYCRDCRPEEGLSLMHEMRKLGLEPKLDTYKSLISAFGKQQQLEQAEELLK 908 (909)
Q Consensus 850 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 908 (909)
.-|..-++.+...|.+++|..++++..+.. .||..+=..-+.-..+++..++|.+++.
T Consensus 406 Ely~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~s 463 (700)
T KOG1156|consen 406 ELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLS 463 (700)
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHH
Confidence 788899999999999999999999998652 4565554456666789999999998763
No 75
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.44 E-value=9.3e-12 Score=116.11 Aligned_cols=235 Identities=14% Similarity=0.131 Sum_probs=196.6
Q ss_pred hHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHH
Q 002549 640 SIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQAL 719 (909)
Q Consensus 640 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 719 (909)
-....++..|.+.|.+.+|.+.++..++. .+.+.+|-.|..+|.+..++..|+.++.+.++..|. ++.....+.+.+
T Consensus 224 wWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~-~VT~l~g~ARi~ 300 (478)
T KOG1129|consen 224 WWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPF-DVTYLLGQARIH 300 (478)
T ss_pred HHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCc-hhhhhhhhHHHH
Confidence 34467889999999999999999998876 445667777889999999999999999999987665 665566778889
Q ss_pred HhcCchhhHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccCchHHHH
Q 002549 720 IVDGRLNELYVVIQELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYHGMKAAGYFPTMYLYRVMSGLFCKGKRVRDVE 799 (909)
Q Consensus 720 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 799 (909)
...++.++|.++++...+.. +.+...+..+...|.-.++++-|+.+|+++++.|+ .++..|+.+.-++.-.+++|-++
T Consensus 301 eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L 378 (478)
T KOG1129|consen 301 EAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVL 378 (478)
T ss_pred HHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhH
Confidence 99999999999999988764 33334445566678888999999999999999885 57788888988888999999999
Q ss_pred HHHHHHHHCCCCCCH--HhHHHHHHHhhccCCHHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCChhhHHHHHHHHH
Q 002549 800 AMVSEMKEAGFKPDL--SIWNSMLKLYTGIEDFKKTIQVYQEIQEADLQPDE-DSFNTLIIMYCRDCRPEEGLSLMHEMR 876 (909)
Q Consensus 800 ~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~ 876 (909)
..|+.++.....|+. ..|..+.......||+..|.+.|+-++. -+|+. .++++|+-.-.+.|+.++|..++....
T Consensus 379 ~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~--~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~ 456 (478)
T KOG1129|consen 379 PSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT--SDAQHGEALNNLAVLAARSGDILGARSLLNAAK 456 (478)
T ss_pred HHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhc--cCcchHHHHHhHHHHHhhcCchHHHHHHHHHhh
Confidence 999999876555665 5799999999999999999999999998 67765 899999999999999999999999887
Q ss_pred HcCCCCC
Q 002549 877 KLGLEPK 883 (909)
Q Consensus 877 ~~~~~p~ 883 (909)
...|+
T Consensus 457 --s~~P~ 461 (478)
T KOG1129|consen 457 --SVMPD 461 (478)
T ss_pred --hhCcc
Confidence 34554
No 76
>PRK12370 invasion protein regulator; Provisional
Probab=99.43 E-value=3.2e-11 Score=133.76 Aligned_cols=242 Identities=12% Similarity=0.022 Sum_probs=186.2
Q ss_pred CChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHc---------CCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcC
Q 002549 653 KLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAAS---------GCYERARAVFNTMMRDGPSPTVDSINGLLQALIVDG 723 (909)
Q Consensus 653 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 723 (909)
+.+++|...|+++++. .|.+...|..++.+|... +++++|...++++++.+|. +...+..+..++...|
T Consensus 275 ~~~~~A~~~~~~Al~l-dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 275 YSLQQALKLLTQCVNM-SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN-NPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHHhc-CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcc
Confidence 4568999999999987 566777787777766532 4489999999999998887 7788889999999999
Q ss_pred chhhHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchH-HHHHHHHHHHhccCchHHHHHHH
Q 002549 724 RLNELYVVIQELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYHGMKAAGYFPTM-YLYRVMSGLFCKGKRVRDVEAMV 802 (909)
Q Consensus 724 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~ 802 (909)
++++|...++++.+.+ +.+...+..+..++...|++++|...+++..+.. |+. ..+..++..+...|++++|+..+
T Consensus 353 ~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--P~~~~~~~~~~~~~~~~g~~eeA~~~~ 429 (553)
T PRK12370 353 EYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLD--PTRAAAGITKLWITYYHTGIDDAIRLG 429 (553)
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHhccCHHHHHHHH
Confidence 9999999999999886 3445667778899999999999999999999854 432 23333444566789999999999
Q ss_pred HHHHHCCCCCCH-HhHHHHHHHhhccCCHHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCChhhHHHHHHHHHH-cC
Q 002549 803 SEMKEAGFKPDL-SIWNSMLKLYTGIEDFKKTIQVYQEIQEADLQPDE-DSFNTLIIMYCRDCRPEEGLSLMHEMRK-LG 879 (909)
Q Consensus 803 ~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~ 879 (909)
+++.+.. +|+. ..+..+..++...|++++|.+.++++.. ..|+. .....++..|+..| ++|...++++.+ ..
T Consensus 430 ~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~ 504 (553)
T PRK12370 430 DELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEIST--QEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQ 504 (553)
T ss_pred HHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh--ccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhh
Confidence 9998642 4554 4577788888899999999999999887 67765 55667777888888 488888888776 33
Q ss_pred CCCChhhHHHHHHHHhccCCHHHHHHh
Q 002549 880 LEPKLDTYKSLISAFGKQQQLEQAEEL 906 (909)
Q Consensus 880 ~~p~~~~~~~l~~~~~~~g~~~~A~~~ 906 (909)
..|...-+ +...+.-.|+.+.|..+
T Consensus 505 ~~~~~~~~--~~~~~~~~g~~~~~~~~ 529 (553)
T PRK12370 505 RIDNNPGL--LPLVLVAHGEAIAEKMW 529 (553)
T ss_pred HhhcCchH--HHHHHHHHhhhHHHHHH
Confidence 44443333 34445566777776654
No 77
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.40 E-value=2.4e-11 Score=113.39 Aligned_cols=229 Identities=9% Similarity=0.045 Sum_probs=159.6
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCCchHHHHHHHHhhh
Q 002549 572 ESLIHSCEYNERFAEASQVFSDMRFYNIEPSEDLYRSMVVAYCKMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGR 651 (909)
Q Consensus 572 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 651 (909)
+.+..+|.+.|.+.+|...|+.-++. .|-+.||..+...|.+.++++.|+.++.+-++ ..|.+.+....+++.+..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld--~fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLD--SFPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhh--cCCchhhhhhhhHHHHHH
Confidence 67889999999999999999887764 67778888889999999999999999888776 567777777777788888
Q ss_pred cCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCchhhHHHH
Q 002549 652 LKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQALIVDGRLNELYVV 731 (909)
Q Consensus 652 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 731 (909)
.++.++|.++|+.+++. .+.++.....+...|.-.|+++-|+++++++++.|.. +...|+++.-+|.-.++++-++.-
T Consensus 303 m~~~~~a~~lYk~vlk~-~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKL-HPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHhHHHHHHHHHHHHhc-CCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHH
Confidence 88888888888877766 4555665555666666677788888888888877766 666777777777777777777777
Q ss_pred HHHHHhCCCCcc--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccCchHHHHHHHHHHHH
Q 002549 732 IQELQDMDFKIS--KSSILLMLDAFARSGNIFEVKKIYHGMKAAGYFPTMYLYRVMSGLFCKGKRVRDVEAMVSEMKE 807 (909)
Q Consensus 732 ~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 807 (909)
|++....-..|+ ..+|-.+..+....||+..|.+.|+..+..+ ......+|.|.-.-.+.|+.++|..+++.+..
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 777665443333 1223234444455566666666666555432 12344555555555555666666665555544
No 78
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.38 E-value=9.7e-11 Score=122.64 Aligned_cols=240 Identities=17% Similarity=0.213 Sum_probs=137.6
Q ss_pred CCCchHHHHHHHHhhhcCChHHHHHHHHHHHhc-----C-CCCC-hHhHHHHHHHHHHcCCHHHHHHHHHHHHHc-----
Q 002549 636 FEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQR-----C-APVD-RKVWNALIKAYAASGCYERARAVFNTMMRD----- 703 (909)
Q Consensus 636 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~-~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----- 703 (909)
|.-..+...++..|...|+++.|+..++.+++. | ..|. ....+.++..|...+++++|..+|++++..
T Consensus 196 P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~ 275 (508)
T KOG1840|consen 196 PERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVF 275 (508)
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhc
Confidence 333444555666666666666666666665443 1 1122 223334667777778888888888877653
Q ss_pred CCCCCcccHHHHHHHHHhcCchhhHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCC-c
Q 002549 704 GPSPTVDSINGLLQALIVDGRLNELYVVIQELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYHGMKA-----AGYF-P 777 (909)
Q Consensus 704 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~-p 777 (909)
|.. +. --..++..|..+|.+.|++++|..+++...+ .|.. |
T Consensus 276 G~~-h~--------------------------------~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~ 322 (508)
T KOG1840|consen 276 GED-HP--------------------------------AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHP 322 (508)
T ss_pred CCC-CH--------------------------------HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChH
Confidence 111 10 0012333344444445555444444444432 1111 1
Q ss_pred hH-HHHHHHHHHHhccCchHHHHHHHHHHHH---CCCCCCH----HhHHHHHHHhhccCCHHHHHHHHHHHHHcC-----
Q 002549 778 TM-YLYRVMSGLFCKGKRVRDVEAMVSEMKE---AGFKPDL----SIWNSMLKLYTGIEDFKKTIQVYQEIQEAD----- 844 (909)
Q Consensus 778 ~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----- 844 (909)
.+ ..++.++..++..+++++|..+++...+ ..+.++. -++..|...|.+.|++++|.+++++++...
T Consensus 323 ~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~ 402 (508)
T KOG1840|consen 323 EVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLG 402 (508)
T ss_pred HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhccc
Confidence 21 2344555666667777777777666543 1123333 246777777888888888888888877631
Q ss_pred -CCCC-hhhHHHHHHHHHhcCChhhHHHHHHHHHH--c---CCCCC-hhhHHHHHHHHhccCCHHHHHHhhc
Q 002549 845 -LQPD-EDSFNTLIIMYCRDCRPEEGLSLMHEMRK--L---GLEPK-LDTYKSLISAFGKQQQLEQAEELLK 908 (909)
Q Consensus 845 -~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~---~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~ 908 (909)
..+. ...+++++..|.+.+++++|.++|.+... . ...|+ ..+|..|+..|...|++++|.++.+
T Consensus 403 ~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~ 474 (508)
T KOG1840|consen 403 KKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEE 474 (508)
T ss_pred CcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 1222 24667778888888888888887777654 1 12233 4567788888888888888877654
No 79
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.37 E-value=1.7e-10 Score=114.49 Aligned_cols=198 Identities=14% Similarity=0.073 Sum_probs=119.2
Q ss_pred chHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHH
Q 002549 639 LSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQA 718 (909)
Q Consensus 639 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 718 (909)
...+..++..+...|++++|.+.++++++. .|.+...+..++..+...|++++|.+.+++.++..+. +...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~-~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEH-DPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHH
Confidence 344455555555666666666666655544 3444555555566666666666666666666554443 33334444444
Q ss_pred HHhcCchhhHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHhccCchHH
Q 002549 719 LIVDGRLNELYVVIQELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYHGMKAAGY-FPTMYLYRVMSGLFCKGKRVRD 797 (909)
Q Consensus 719 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~ 797 (909)
+ ...|++++|.+.+++..+... ......+..++..+...|++++
T Consensus 109 ~-----------------------------------~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 153 (234)
T TIGR02521 109 L-----------------------------------CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDK 153 (234)
T ss_pred H-----------------------------------HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHH
Confidence 4 444444555555444443211 1123445556667777777777
Q ss_pred HHHHHHHHHHCCCCCC-HHhHHHHHHHhhccCCHHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCChhhHHHHHHHH
Q 002549 798 VEAMVSEMKEAGFKPD-LSIWNSMLKLYTGIEDFKKTIQVYQEIQEADLQP-DEDSFNTLIIMYCRDCRPEEGLSLMHEM 875 (909)
Q Consensus 798 A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 875 (909)
|.+.+++..+. .|+ ...+..++..+...|++++|.+.++++++ ..| +...+..++..+...|+.++|..+.+.+
T Consensus 154 A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 154 AEKYLTRALQI--DPQRPESLLELAELYYLRGQYKDARAYLERYQQ--TYNQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHHHHHHHHh--CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 77777777763 343 45677777777788888888888888877 345 3456667777777788888888887776
Q ss_pred HH
Q 002549 876 RK 877 (909)
Q Consensus 876 ~~ 877 (909)
..
T Consensus 230 ~~ 231 (234)
T TIGR02521 230 QK 231 (234)
T ss_pred Hh
Confidence 53
No 80
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.37 E-value=1.7e-10 Score=103.22 Aligned_cols=190 Identities=11% Similarity=0.069 Sum_probs=128.8
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCchhhHHHHHHHHHhCCCCccHHHHHHHHHHHH
Q 002549 676 VWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQALIVDGRLNELYVVIQELQDMDFKISKSSILLMLDAFA 755 (909)
Q Consensus 676 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 755 (909)
+...|+-.|.+.|++..|..-++++++.+|+ +..+|..+.. .|.
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~-----------------------------------~Yq 80 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAH-----------------------------------YYQ 80 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHH-----------------------------------HHH
Confidence 3445666777788888888888888776655 4444444443 444
Q ss_pred hcCCHHHHHHHHHHHHhcCCCc-hHHHHHHHHHHHhccCchHHHHHHHHHHHHCCCCCCH-HhHHHHHHHhhccCCHHHH
Q 002549 756 RSGNIFEVKKIYHGMKAAGYFP-TMYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDL-SIWNSMLKLYTGIEDFKKT 833 (909)
Q Consensus 756 ~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A 833 (909)
+.|+.+.|.+.|++.++. .| +-.+.|.....+|..|++++|.+.|+++...+..|.. .+|..++.+-.+.|+.+.|
T Consensus 81 ~~Ge~~~A~e~YrkAlsl--~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A 158 (250)
T COG3063 81 KLGENDLADESYRKALSL--APNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQA 158 (250)
T ss_pred HcCChhhHHHHHHHHHhc--CCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhH
Confidence 444555555555555542 23 4456777777788888888888888888776555543 5677777777778888888
Q ss_pred HHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHh
Q 002549 834 IQVYQEIQEADLQPDE-DSFNTLIIMYCRDCRPEEGLSLMHEMRKLGLEPKLDTYKSLISAFGKQQQLEQAEEL 906 (909)
Q Consensus 834 ~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 906 (909)
.+.+++.++ +.|+. .+...+...+.+.|++-.|..+++.....+- ++....---|+.-...|+.+.|-++
T Consensus 159 ~~~l~raL~--~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y 229 (250)
T COG3063 159 EEYLKRALE--LDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRY 229 (250)
T ss_pred HHHHHHHHH--hCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHH
Confidence 888888888 77754 6777888888888888888888888766543 6666655556666677777666543
No 81
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.37 E-value=1.4e-08 Score=103.43 Aligned_cols=121 Identities=13% Similarity=0.069 Sum_probs=66.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 002549 332 LIDSLGKANKISEAANVMSEMLDASVKPTLRTYSALICGYAKAGNRLEAEKTFYCMRRSGIRPDHLAYSVMLDIFLRFNE 411 (909)
Q Consensus 332 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 411 (909)
=++.+...|++++|.+....++..+ +-+...+..-+-+..+.+.+++|..+.+.-... ..+..-+-.-..++.+.++
T Consensus 18 ~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrlnk 94 (652)
T KOG2376|consen 18 DLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLNK 94 (652)
T ss_pred HHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHccc
Confidence 3455566777777777777777654 334555555556666777777777554432210 0011111111233346677
Q ss_pred HhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 002549 412 TNKAMMLYQEMVSNGFTPD-QALYEIMIGVLGRENKGEEIRKVVRDMKEL 460 (909)
Q Consensus 412 ~~~A~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 460 (909)
.++|...++. ..++ ..+...-...+.+.|++++|..+++.+.+.
T Consensus 95 ~Dealk~~~~-----~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn 139 (652)
T KOG2376|consen 95 LDEALKTLKG-----LDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKN 139 (652)
T ss_pred HHHHHHHHhc-----ccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 7777776662 2222 234444455566666777776666666553
No 82
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.33 E-value=4.2e-10 Score=111.70 Aligned_cols=197 Identities=10% Similarity=0.065 Sum_probs=106.9
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCCchHHHHHHHHhh
Q 002549 571 YESLIHSCEYNERFAEASQVFSDMRFYNIEPSEDLYRSMVVAYCKMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYG 650 (909)
Q Consensus 571 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 650 (909)
+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++++. ..|++...+..++..+.
T Consensus 34 ~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~~~~~~~ 110 (234)
T TIGR02521 34 RVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALT--LNPNNGDVLNNYGTFLC 110 (234)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHH
Confidence 3333444444444444444444433321 11223333344444444444444444444444 33444555555566666
Q ss_pred hcCChHHHHHHHHHHHhcC-CCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCchhhHH
Q 002549 651 RLKLWQKAESLVGCLRQRC-APVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQALIVDGRLNELY 729 (909)
Q Consensus 651 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 729 (909)
..|++++|.+.++++.+.. .+.....+..++.++...|++++|...++++++..+. +...+..+...+...|++++|.
T Consensus 111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~ 189 (234)
T TIGR02521 111 QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQYKDAR 189 (234)
T ss_pred HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHHHHH
Confidence 6666666666666655431 1223445555666666667777777777776665544 4445666666666777777777
Q ss_pred HHHHHHHhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 002549 730 VVIQELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYHGMKA 772 (909)
Q Consensus 730 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 772 (909)
..+++..+. .+.+...+..++..+...|+.++|..+.+.+..
T Consensus 190 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 190 AYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 777666655 233444555566666677777777777666654
No 83
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.31 E-value=3e-09 Score=111.62 Aligned_cols=210 Identities=10% Similarity=0.101 Sum_probs=113.2
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCCchHHHHHHHHhhh
Q 002549 572 ESLIHSCEYNERFAEASQVFSDMRFYNIEPSEDLYRSMVVAYCKMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGR 651 (909)
Q Consensus 572 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 651 (909)
+.+...|...+++++|..+|+++... ++... -.-.|.-..++..|+.+|.+
T Consensus 245 ~~~a~~y~~~~k~~eAv~ly~~AL~i----------------------------~e~~~-G~~h~~va~~l~nLa~ly~~ 295 (508)
T KOG1840|consen 245 NILALVYRSLGKYDEAVNLYEEALTI----------------------------REEVF-GEDHPAVAATLNNLAVLYYK 295 (508)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHH----------------------------HHHhc-CCCCHHHHHHHHHHHHHHhc
Confidence 34666777778888888888776531 00000 00112223344555555556
Q ss_pred cCChHHHHHHHHHHHhc-----C-CCCC-hHhHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCCCcccHHHHHHHHHh
Q 002549 652 LKLWQKAESLVGCLRQR-----C-APVD-RKVWNALIKAYAASGCYERARAVFNTMMRDG---PSPTVDSINGLLQALIV 721 (909)
Q Consensus 652 ~~~~~~A~~~~~~~~~~-----~-~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~ 721 (909)
.|++++|...++++.+. + .++. ...++.++..|...+++++|..++.+.++.- +.++.+
T Consensus 296 ~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~----------- 364 (508)
T KOG1840|consen 296 QGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNV----------- 364 (508)
T ss_pred cCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccch-----------
Confidence 66665555555554321 0 1122 2344556677777888888888888766532 111110
Q ss_pred cCchhhHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc------CCCc-hHHHHHHHHHHHhccCc
Q 002549 722 DGRLNELYVVIQELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYHGMKAA------GYFP-TMYLYRVMSGLFCKGKR 794 (909)
Q Consensus 722 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~~p-~~~~~~~l~~~~~~~g~ 794 (909)
.-..++..+...|.+.|++++|.+++++++.. +..+ ....++.|...|.+.++
T Consensus 365 --------------------~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~ 424 (508)
T KOG1840|consen 365 --------------------NLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKK 424 (508)
T ss_pred --------------------HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcc
Confidence 01223444555555555555555555555431 1112 23456666667777777
Q ss_pred hHHHHHHHHHHHHC--CC---CCCH-HhHHHHHHHhhccCCHHHHHHHHHHHH
Q 002549 795 VRDVEAMVSEMKEA--GF---KPDL-SIWNSMLKLYTGIEDFKKTIQVYQEIQ 841 (909)
Q Consensus 795 ~~~A~~~~~~~~~~--~~---~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~ 841 (909)
+.+|.++|.+...- -+ .|+. .+|..|+.+|...|+++.|+++.+++.
T Consensus 425 ~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 425 YEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred cchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 77777777665321 12 2233 456667777777777777777766665
No 84
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.31 E-value=2.4e-07 Score=97.79 Aligned_cols=249 Identities=18% Similarity=0.218 Sum_probs=150.3
Q ss_pred CHHHHHHHH--HHHHhcCChhHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChHHHHHHH
Q 002549 79 NARMLATIL--AVLGKANQENLAVETFMRAESAVDDTVQVYNAMMGIYARNGRFQKVQELLDLMRKRGCEPDLVSFNTLI 156 (909)
Q Consensus 79 ~~~~~~~l~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll 156 (909)
|+.+--.++ +.|...|..+.|.+..+-+. +..+|..|.+.+.+.++.+-|.-.+..|....
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik-----S~~vW~nmA~McVkT~RLDVAkVClGhm~~aR------------ 787 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK-----SDSVWDNMASMCVKTRRLDVAKVCLGHMKNAR------------ 787 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh-----hhHHHHHHHHHhhhhccccHHHHhhhhhhhhh------------
Confidence 333333444 34677788888877665443 56789999999999999998888887776321
Q ss_pred HHHHHcCCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 002549 157 NARLRSGAMVPNLGVDLLNEVRRSGLRPDIITYNTIISACSRESNLEEAMKVYGDLEAHNCQPDLWTYNAMISVYGRCGL 236 (909)
Q Consensus 157 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 236 (909)
..+.+++..+.|-. ... ...-.....|.+++|..+|.+..+ |..|=+.|-..|.
T Consensus 788 -------------gaRAlR~a~q~~~e--~ea--kvAvLAieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~ 841 (1416)
T KOG3617|consen 788 -------------GARALRRAQQNGEE--DEA--KVAVLAIELGMLEEALILYRQCKR---------YDLLNKLYQSQGM 841 (1416)
T ss_pred -------------hHHHHHHHHhCCcc--hhh--HHHHHHHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhccc
Confidence 11122333332211 111 111122344677777777776654 3344455666677
Q ss_pred HhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----------HHCC---------CCCCHHHHHHH
Q 002549 237 FEKAEQLFKELESKGFFPDAVTYNSLLYAFAREGNVEKVKEISENM----------LKMG---------FGKDEMTYNTI 297 (909)
Q Consensus 237 ~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~----------~~~~---------~~~~~~~~~~l 297 (909)
+++|+++-+.--+-. -..||..-..-+-..++.+.|++.|++. ++.. -..|...|.-.
T Consensus 842 w~eA~eiAE~~DRiH---Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WW 918 (1416)
T KOG3617|consen 842 WSEAFEIAETKDRIH---LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWW 918 (1416)
T ss_pred HHHHHHHHhhcccee---hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHH
Confidence 777776654322211 2234444444444556666666555432 1111 02344555555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 002549 298 IHMYGKQGQHDVALQLYRDMKLSGRNPDVVTYTVLIDSLGKANKISEAANVMSEMLDASVKPTLRTYSALICGYAKAGNR 377 (909)
Q Consensus 298 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 377 (909)
..-+-..|+.|.|+.+|..... |-++++..|-+|+.++|-++-++- -|..++..+.+.|-..|++
T Consensus 919 gqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v 983 (1416)
T KOG3617|consen 919 GQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDV 983 (1416)
T ss_pred HHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHH
Confidence 5555567888888888777653 666777778888888888777663 3667777888888888888
Q ss_pred HHHHHHHHHHH
Q 002549 378 LEAEKTFYCMR 388 (909)
Q Consensus 378 ~~a~~~~~~~~ 388 (909)
.+|...|.+..
T Consensus 984 ~~Av~FfTrAq 994 (1416)
T KOG3617|consen 984 VKAVKFFTRAQ 994 (1416)
T ss_pred HHHHHHHHHHH
Confidence 88888887654
No 85
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.29 E-value=3.4e-10 Score=114.97 Aligned_cols=259 Identities=14% Similarity=0.087 Sum_probs=188.4
Q ss_pred HHhhcCChhhHHHHHHHHHHcCCCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHH
Q 002549 612 AYCKMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYE 691 (909)
Q Consensus 612 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 691 (909)
-+.+.|+..+|.-.|+.+++ -+|++..+|..|+.+....++=..|+..+++.++. .|.+..+...|+-.|...|.-.
T Consensus 294 ~lm~nG~L~~A~LafEAAVk--qdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~L-dP~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVK--QDPQHAEAWQKLGITQAENENEQNAISALRRCLEL-DPTNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHhcCCchHHHHHHHHHHh--hChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhc-CCccHHHHHHHHHHHhhhhhHH
Confidence 34567778888888887777 57888888888888888888888888888888776 5667777778888888888888
Q ss_pred HHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCchhhHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002549 692 RARAVFNTMMRDGPSPTVDSINGLLQALIVDGRLNELYVVIQELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYHGMK 771 (909)
Q Consensus 692 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 771 (909)
+|+..++.-+...|+ |..+..+ ...++... .+-.++... +.+..++|-.+.
T Consensus 371 ~Al~~L~~Wi~~~p~-----y~~l~~a-~~~~~~~~----------~~s~~~~~~-------------l~~i~~~fLeaa 421 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPK-----YVHLVSA-GENEDFEN----------TKSFLDSSH-------------LAHIQELFLEAA 421 (579)
T ss_pred HHHHHHHHHHHhCcc-----chhcccc-CccccccC----------CcCCCCHHH-------------HHHHHHHHHHHH
Confidence 888888887764433 2111110 00000000 001122222 223334444444
Q ss_pred -hcCCCchHHHHHHHHHHHhccCchHHHHHHHHHHHHCCCCCCH-HhHHHHHHHhhccCCHHHHHHHHHHHHHcCCCCCh
Q 002549 772 -AAGYFPTMYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDL-SIWNSMLKLYTGIEDFKKTIQVYQEIQEADLQPDE 849 (909)
Q Consensus 772 -~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 849 (909)
..+..+++.+...|.-.|--.|.++.|...|+.++. .+|+. .+||-|+..++...+.++|+..|+++++ +.|..
T Consensus 422 ~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~--v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~y 497 (579)
T KOG1125|consen 422 RQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQ--VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGY 497 (579)
T ss_pred HhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHh--cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCe
Confidence 345457888899999999999999999999999998 57755 7899999999999999999999999999 99986
Q ss_pred -hhHHHHHHHHHhcCChhhHHHHHHHHHH---cC------CCCChhhHHHHHHHHhccCCHHHHHHh
Q 002549 850 -DSFNTLIIMYCRDCRPEEGLSLMHEMRK---LG------LEPKLDTYKSLISAFGKQQQLEQAEEL 906 (909)
Q Consensus 850 -~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~------~~p~~~~~~~l~~~~~~~g~~~~A~~~ 906 (909)
.+..+|+-+|...|.|.||.+.|-+++. .+ ..++..+|.+|=.++.-.++.|-+.+.
T Consensus 498 VR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 498 VRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred eeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 8999999999999999999999988775 21 112235788888888888887755443
No 86
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.28 E-value=1e-09 Score=111.09 Aligned_cols=216 Identities=12% Similarity=0.042 Sum_probs=113.1
Q ss_pred ChhhHHHHHHHHHHc-CCCCCC-chHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHH
Q 002549 618 FPETAHFIADQAEKK-GIPFED-LSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARA 695 (909)
Q Consensus 618 ~~~~a~~~~~~~~~~-~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 695 (909)
..+.++.-+.+++.. .+.|+. ...+..++..|...|++++|...|+++++. .|.++..|+.++..+...|++++|..
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l-~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALAL-RPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 344444445444431 122222 455666777777777777777777777665 45566777777777777777777777
Q ss_pred HHHHHHHcCCCCCcccHHHHHHHHHhcCchhhHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 002549 696 VFNTMMRDGPSPTVDSINGLLQALIVDGRLNELYVVIQELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYHGMKAAGY 775 (909)
Q Consensus 696 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 775 (909)
.|+++++..|. +..+|..++.++...|++++|++.+++..+.... ..........+...++.++|...+.+.....
T Consensus 120 ~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~--~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~- 195 (296)
T PRK11189 120 AFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPN--DPYRALWLYLAESKLDPKQAKENLKQRYEKL- 195 (296)
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHccCCHHHHHHHHHHHHhhC-
Confidence 77777776655 4556666666666667777777777666654321 1111111112233455666666665443321
Q ss_pred CchHHHHHHHHHHHhccCchHHHHHHHHHHHHCC-----CCCC-HHhHHHHHHHhhccCCHHHHHHHHHHHHH
Q 002549 776 FPTMYLYRVMSGLFCKGKRVRDVEAMVSEMKEAG-----FKPD-LSIWNSMLKLYTGIEDFKKTIQVYQEIQE 842 (909)
Q Consensus 776 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 842 (909)
.|+...+ .++ ....|+.+++ +.++.+.+.- ..|+ ...|..++..+...|++++|+..|+++++
T Consensus 196 ~~~~~~~-~~~--~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~ 264 (296)
T PRK11189 196 DKEQWGW-NIV--EFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALA 264 (296)
T ss_pred CccccHH-HHH--HHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1211111 111 1223443332 2333332210 0111 13455555556666666666666666665
No 87
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.27 E-value=4.2e-08 Score=92.87 Aligned_cols=211 Identities=10% Similarity=0.008 Sum_probs=117.0
Q ss_pred HHHHHhcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCH
Q 002549 469 SSILVKGECYDHAAEILRSAIRNGIELDHEKLLSILSSYNVSGRHLEACELIEFVKQHASESTPPLTQAFIIMLCKAQKL 548 (909)
Q Consensus 469 ~~~~~~~~~~~~a~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 548 (909)
..-++..+++..|+.-|..+++.. +.+-.++..-...|...|+-..|+.-++.+++..|+... ....-...+.+.|.+
T Consensus 45 Gk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~-ARiQRg~vllK~Gel 122 (504)
T KOG0624|consen 45 GKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMA-ARIQRGVVLLKQGEL 122 (504)
T ss_pred HHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHH-HHHHhchhhhhcccH
Confidence 344555566666666666664321 111122222334566666666666666666655444211 112223345566666
Q ss_pred HHHHHHHHHhhccCCcccchhhHHHHHHHHHhcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHH
Q 002549 549 DAALEEYSNAWGFGFFSKSKTMYESLIHSCEYNERFAEASQVFSDMRFYNIEPSEDLYRSMVVAYCKMDFPETAHFIADQ 628 (909)
Q Consensus 549 ~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 628 (909)
+.|..-|+.+.+.. |.+... ..++.+ +.+.+++ ......+..+...|+...|+.....
T Consensus 123 e~A~~DF~~vl~~~--~s~~~~----~eaqsk-------l~~~~e~---------~~l~~ql~s~~~~GD~~~ai~~i~~ 180 (504)
T KOG0624|consen 123 EQAEADFDQVLQHE--PSNGLV----LEAQSK-------LALIQEH---------WVLVQQLKSASGSGDCQNAIEMITH 180 (504)
T ss_pred HHHHHHHHHHHhcC--CCcchh----HHHHHH-------HHhHHHH---------HHHHHHHHHHhcCCchhhHHHHHHH
Confidence 66666666665543 110000 000000 0011111 0122233345556777777777777
Q ss_pred HHHcCCCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 002549 629 AEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPS 706 (909)
Q Consensus 629 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 706 (909)
+++ +.|.+.+.+..-+.+|...|....|+.-++.+.+. ...++....-+...+...|+.+.++...++.++.+|.
T Consensus 181 llE--i~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askL-s~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpd 255 (504)
T KOG0624|consen 181 LLE--IQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKL-SQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPD 255 (504)
T ss_pred HHh--cCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhc-cccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcc
Confidence 777 77777788888888888888888888777777665 3345666666667777778888888888888775543
No 88
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.27 E-value=2.5e-07 Score=94.59 Aligned_cols=462 Identities=18% Similarity=0.138 Sum_probs=257.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHH--HHHHH
Q 002549 364 YSALICGYAKAGNRLEAEKTFYCMRRSGIRPDHLAYSVMLDIFLRFNETNKAMMLYQEMVSNGFTPDQALYEI--MIGVL 441 (909)
Q Consensus 364 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~--ll~~~ 441 (909)
..+=++.+.+.|++++|.+...++...+ +.+...+.+-+-++.+.+++++|+.+.+.-.. ..+++. +=.+|
T Consensus 15 l~t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~------~~~~~~~~fEKAY 87 (652)
T KOG2376|consen 15 LLTDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGA------LLVINSFFFEKAY 87 (652)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch------hhhcchhhHHHHH
Confidence 3344566778899999999999998865 45566777777788899999999865544221 112222 23444
Q ss_pred --hcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHhcccHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCCHHHHHH
Q 002549 442 --GRENKGEEIRKVVRDMKELSGINMQEISSILVKGECYDHAAEILRSAIRNGIELDH-EKLLSILSSYNVSGRHLEACE 518 (909)
Q Consensus 442 --~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~d~-~~~~~l~~~~~~~~~~~~a~~ 518 (909)
.+.++.++|...++...+.+.......+..+.+.++|++|+.+|+.+.+.+.+.-. ..-..++.+-.. ..+.
T Consensus 88 c~Yrlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~----l~~~- 162 (652)
T KOG2376|consen 88 CEYRLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA----LQVQ- 162 (652)
T ss_pred HHHHcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh----hhHH-
Confidence 46899999999887443322222223457788889999999999999876644322 222222221110 1111
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhc--------cCCcccch-----hhHHHHHHHHHhcccHH
Q 002549 519 LIEFVKQHASESTPPLTQAFIIMLCKAQKLDAALEEYSNAWG--------FGFFSKSK-----TMYESLIHSCEYNERFA 585 (909)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~-----~~~~~li~~~~~~g~~~ 585 (909)
+.+ .....+..+...+......+...|++.+|+++++.+.. .+....+. .+...|..++-..|+..
T Consensus 163 ~~q-~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ 241 (652)
T KOG2376|consen 163 LLQ-SVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTA 241 (652)
T ss_pred HHH-hccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchH
Confidence 111 11112222333334445557778899999988888721 11000111 12233445555678888
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHh---hcCChhh--HHHHHHHHHHcCCCCCCchHHHHHHHHhhhcCChHHHHH
Q 002549 586 EASQVFSDMRFYNIEPSEDLYRSMVVAYC---KMDFPET--AHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAES 660 (909)
Q Consensus 586 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~---~~~~~~~--a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 660 (909)
+|..++...+... .+|.........-+. .-.++-. ++..++.. .....+.+..
T Consensus 242 ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~---------------------~~~l~~~~l~ 299 (652)
T KOG2376|consen 242 EASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQ---------------------VFKLAEFLLS 299 (652)
T ss_pred HHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHH---------------------HHHhHHHHHH
Confidence 8888887777653 334333222222111 1111111 00000000 0001111111
Q ss_pred HHHHHHhcCCCCChHhH-HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHH--HhcCchhhHHHHHHHHHh
Q 002549 661 LVGCLRQRCAPVDRKVW-NALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQAL--IVDGRLNELYVVIQELQD 737 (909)
Q Consensus 661 ~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~ 737 (909)
.+..-.. ..... +.++..| .+..+.+.++....-. ..|. ..+.+++... .+...+..|.+++...-+
T Consensus 300 ~Ls~~qk-----~~i~~N~~lL~l~--tnk~~q~r~~~a~lp~--~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~ 369 (652)
T KOG2376|consen 300 KLSKKQK-----QAIYRNNALLALF--TNKMDQVRELSASLPG--MSPE-SLFPILLQEATKVREKKHKKAIELLLQFAD 369 (652)
T ss_pred HHHHHHH-----HHHHHHHHHHHHH--hhhHHHHHHHHHhCCc--cCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhc
Confidence 1111110 11222 2333333 3445555555544422 1122 2233444332 223357778888888776
Q ss_pred CCCCccHHHHHHHHHHHHhcCCHHHHHHHHH--------HHHhcCCCchHHHHHHHHHHHhccCchHHHHHHHHHHHHCC
Q 002549 738 MDFKISKSSILLMLDAFARSGNIFEVKKIYH--------GMKAAGYFPTMYLYRVMSGLFCKGKRVRDVEAMVSEMKEAG 809 (909)
Q Consensus 738 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~--------~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 809 (909)
.....+..+....++.....|+++.|.+++. .+.+.+..|. +...++..+.+.+..+.|.+++.++...-
T Consensus 370 ~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~ 447 (652)
T KOG2376|consen 370 GHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPG--TVGAIVALYYKIKDNDSASAVLDSAIKWW 447 (652)
T ss_pred cCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChh--HHHHHHHHHHhccCCccHHHHHHHHHHHH
Confidence 6544445666677778888999999999998 5555444444 44556777778877777777777765310
Q ss_pred --CCCCHHh----HHHHHHHhhccCCHHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCChhhHHHHHHHH
Q 002549 810 --FKPDLSI----WNSMLKLYTGIEDFKKTIQVYQEIQEADLQP-DEDSFNTLIIMYCRDCRPEEGLSLMHEM 875 (909)
Q Consensus 810 --~~p~~~~----~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 875 (909)
..+.... +.-++..--+.|+-++|..+++++.+ .+| |..+...++.+|++. +++.|..+-+.+
T Consensus 448 ~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k--~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 448 RKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVK--FNPNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHH--hCCchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 1222222 33333333456999999999999999 777 558888999999976 568888776654
No 89
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.27 E-value=2.4e-09 Score=108.40 Aligned_cols=228 Identities=11% Similarity=0.036 Sum_probs=165.4
Q ss_pred CChHHHHHHHHHHHhcCC---CCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCchhhHH
Q 002549 653 KLWQKAESLVGCLRQRCA---PVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQALIVDGRLNELY 729 (909)
Q Consensus 653 ~~~~~A~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 729 (909)
+..+.++..+.+++.... +.....|..++..|...|++++|...|+++++..|+ +...|+.++..+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHHH
Confidence 466778888888875411 122456888899999999999999999999998887 7889999999999999999999
Q ss_pred HHHHHHHhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccCchHHHHHHHHHHHHCC
Q 002549 730 VVIQELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYHGMKAAGYFPTMYLYRVMSGLFCKGKRVRDVEAMVSEMKEAG 809 (909)
Q Consensus 730 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 809 (909)
..|++..+... .+..++..+..++...|++++|.+.|++..+.. |+..........+...+++++|++.+++....
T Consensus 119 ~~~~~Al~l~P-~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~- 194 (296)
T PRK11189 119 EAFDSVLELDP-TYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEK- 194 (296)
T ss_pred HHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh-
Confidence 99999998652 235667778888999999999999999999854 43322222223345678899999999876642
Q ss_pred CCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHc-----CCCCC-hhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCC
Q 002549 810 FKPDLSIWNSMLKLYTGIEDFKKTIQVYQEIQEA-----DLQPD-EDSFNTLIIMYCRDCRPEEGLSLMHEMRKLGLEPK 883 (909)
Q Consensus 810 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 883 (909)
..|+...+ .+ .....|+..++ +.++.+.+. .+.|+ ..+|..++..+...|++++|+.+|++..+.. .||
T Consensus 195 ~~~~~~~~-~~--~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~-~~~ 269 (296)
T PRK11189 195 LDKEQWGW-NI--VEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN-VYN 269 (296)
T ss_pred CCccccHH-HH--HHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-Cch
Confidence 34443332 22 22334555443 344444421 13343 3689999999999999999999999998653 346
Q ss_pred hhhHHHH
Q 002549 884 LDTYKSL 890 (909)
Q Consensus 884 ~~~~~~l 890 (909)
.+-++..
T Consensus 270 ~~e~~~~ 276 (296)
T PRK11189 270 FVEHRYA 276 (296)
T ss_pred HHHHHHH
Confidence 5555543
No 90
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.27 E-value=2e-08 Score=95.01 Aligned_cols=192 Identities=18% Similarity=0.063 Sum_probs=113.8
Q ss_pred HHHHhcCCHHHHHHHHHHhhccCCcccchhhHHHHHHHHHhcccHHHHHHHHHHHHhCCCCCCHHHHH-HHHHHHhhcCC
Q 002549 540 IMLCKAQKLDAALEEYSNAWGFGFFSKSKTMYESLIHSCEYNERFAEASQVFSDMRFYNIEPSEDLYR-SMVVAYCKMDF 618 (909)
Q Consensus 540 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~-~l~~~~~~~~~ 618 (909)
..+...|++.+|+..|..+.+.+ |.+-.++..-...|...|+..-|+.=+...++ ++||-..-. .-...+.+.|.
T Consensus 46 k~lla~~Q~sDALt~yHaAve~d--p~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~vllK~Ge 121 (504)
T KOG0624|consen 46 KELLARGQLSDALTHYHAAVEGD--PNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGVVLLKQGE 121 (504)
T ss_pred HHHHHhhhHHHHHHHHHHHHcCC--chhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhchhhhhccc
Confidence 33444555555555555555443 33434444444455555555555555555543 244433211 11234455566
Q ss_pred hhhHHHHHHHHHHcCCCCCC---------------chHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHH
Q 002549 619 PETAHFIADQAEKKGIPFED---------------LSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKA 683 (909)
Q Consensus 619 ~~~a~~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 683 (909)
++.|..-|+.++.+ .|++ ...+...+..+...|+...|++++..+++. .|.|...+..-..+
T Consensus 122 le~A~~DF~~vl~~--~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi-~~Wda~l~~~Rakc 198 (504)
T KOG0624|consen 122 LEQAEADFDQVLQH--EPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI-QPWDASLRQARAKC 198 (504)
T ss_pred HHHHHHHHHHHHhc--CCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc-CcchhHHHHHHHHH
Confidence 66666666655552 2211 111233344556677888888888888876 56677788788888
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCchhhHHHHHHHHHhCC
Q 002549 684 YAASGCYERARAVFNTMMRDGPSPTVDSINGLLQALIVDGRLNELYVVIQELQDMD 739 (909)
Q Consensus 684 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 739 (909)
|...|++..|+.-++.+.+.... +..+..-+...+...|+.+.++....+..+.+
T Consensus 199 ~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLKld 253 (504)
T KOG0624|consen 199 YIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLKLD 253 (504)
T ss_pred HHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHccC
Confidence 88888888888877777665444 55556666677777888888887777777654
No 91
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.26 E-value=8.3e-09 Score=109.96 Aligned_cols=286 Identities=13% Similarity=0.129 Sum_probs=195.7
Q ss_pred HHHhhcCChhhHHHHHHHHHHcCCCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHc---
Q 002549 611 VAYCKMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAAS--- 687 (909)
Q Consensus 611 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--- 687 (909)
..+...|++++|+..+..... ..+|...+....+..+.+.|++++|..++..+++. .|.+..-|..+..+....
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~--~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r-NPdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEK--QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR-NPDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhh--hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-CCCcHHHHHHHHHHHhhhccc
Confidence 345566677777766655443 45566777788888888899999999999998887 455666666666665222
Q ss_pred --CCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCch-hhHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCCHHHHH
Q 002549 688 --GCYERARAVFNTMMRDGPSPTVDSINGLLQALIVDGRL-NELYVVIQELQDMDFKISKSSILLMLDAFARSGNIFEVK 764 (909)
Q Consensus 688 --g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 764 (909)
.+.+.-.++++......|. ..+...+.-.+.....+ ..+..++..+...|+++ +|..+-..|....+.+-..
T Consensus 89 ~~~~~~~~~~~y~~l~~~yp~--s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~ 163 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKYPR--SDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIE 163 (517)
T ss_pred ccccHHHHHHHHHHHHHhCcc--ccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHH
Confidence 2567778888888776654 22232232222222233 33456666777777654 3444444555555555555
Q ss_pred HHHHHHHhc----C----------CCchHHHH--HHHHHHHhccCchHHHHHHHHHHHHCCCCCCH-HhHHHHHHHhhcc
Q 002549 765 KIYHGMKAA----G----------YFPTMYLY--RVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDL-SIWNSMLKLYTGI 827 (909)
Q Consensus 765 ~~~~~~~~~----~----------~~p~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~ 827 (909)
.++...... + -+|+...| .-+...|...|++++|++.++++++ .+|.. ..|..-+..+.+.
T Consensus 164 ~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~--htPt~~ely~~KarilKh~ 241 (517)
T PF12569_consen 164 SLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIE--HTPTLVELYMTKARILKHA 241 (517)
T ss_pred HHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHC
Confidence 555554421 1 13444444 4557788899999999999999998 57775 5677788899999
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHH-HHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhH--------HHHHHHHhccC
Q 002549 828 EDFKKTIQVYQEIQEADLQPDEDSFN-TLIIMYCRDCRPEEGLSLMHEMRKLGLEPKLDTY--------KSLISAFGKQQ 898 (909)
Q Consensus 828 g~~~~A~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~--------~~l~~~~~~~g 898 (909)
|++++|.+.++.+.+ +.+.....+ -.+.-+.+.|+.++|.+++......+..|....+ ...+.+|.+.|
T Consensus 242 G~~~~Aa~~~~~Ar~--LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~ 319 (517)
T PF12569_consen 242 GDLKEAAEAMDEARE--LDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQG 319 (517)
T ss_pred CCHHHHHHHHHHHHh--CChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999 888665555 4567888999999999999988765544433222 34578899999
Q ss_pred CHHHHHHhhc
Q 002549 899 QLEQAEELLK 908 (909)
Q Consensus 899 ~~~~A~~~~~ 908 (909)
++..|++.+.
T Consensus 320 ~~~~ALk~~~ 329 (517)
T PF12569_consen 320 DYGLALKRFH 329 (517)
T ss_pred hHHHHHHHHH
Confidence 9999998763
No 92
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=2.1e-08 Score=101.36 Aligned_cols=384 Identities=11% Similarity=0.034 Sum_probs=253.8
Q ss_pred HHHHHhcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCH
Q 002549 469 SSILVKGECYDHAAEILRSAIRNGIELDHEKLLSILSSYNVSGRHLEACELIEFVKQHASESTPPLTQAFIIMLCKAQKL 548 (909)
Q Consensus 469 ~~~~~~~~~~~~a~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 548 (909)
.+.....|+++.|+..|.+++..... +.+.|..-..+|...|++++|.+=-....+..|. -..-|...+..+.-.|++
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~p~-nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~-w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLSPT-NHVLYSNRSAAYASLGSYEKALKDATKTRRLNPD-WAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccCCC-ccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCc-hhhHHHHhHHHHHhcccH
Confidence 35667889999999999999876544 8888999999999999999999888887777665 345677788888889999
Q ss_pred HHHHHHHHHhhccCCcccchhhHHHHHHHHHhcccHHHHHHHHHH--HHhCCCCCC--------HHHHHHHHHHHhhcC-
Q 002549 549 DAALEEYSNAWGFGFFSKSKTMYESLIHSCEYNERFAEASQVFSD--MRFYNIEPS--------EDLYRSMVVAYCKMD- 617 (909)
Q Consensus 549 ~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~--m~~~~~~p~--------~~~~~~l~~~~~~~~- 617 (909)
++|+..|..-++.. |.+...++.+..++..... +.+.|.. |. .++..+ ...|..++..+.+.-
T Consensus 87 ~eA~~ay~~GL~~d--~~n~~L~~gl~~a~~~~~~---~~~~~~~p~~~-~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~ 160 (539)
T KOG0548|consen 87 EEAILAYSEGLEKD--PSNKQLKTGLAQAYLEDYA---ADQLFTKPYFH-EKLANLPLTNYSLSDPAYVKILEIIQKNPT 160 (539)
T ss_pred HHHHHHHHHHhhcC--CchHHHHHhHHHhhhHHHH---hhhhccCcHHH-HHhhcChhhhhhhccHHHHHHHHHhhcCcH
Confidence 99999999999886 8888899999888822111 1111110 00 000011 111222222111100
Q ss_pred ------ChhhHHHHHHHHH---------------HcCCCCC---------------------CchHHHHHHHHhhhcCCh
Q 002549 618 ------FPETAHFIADQAE---------------KKGIPFE---------------------DLSIYVDIIDAYGRLKLW 655 (909)
Q Consensus 618 ------~~~~a~~~~~~~~---------------~~~~~~~---------------------~~~~~~~l~~~~~~~~~~ 655 (909)
+...-......+. ..+..|. .......+++...+..++
T Consensus 161 ~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f 240 (539)
T KOG0548|consen 161 SLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDF 240 (539)
T ss_pred hhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhH
Confidence 0000000000000 0011110 012244577777778888
Q ss_pred HHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHH-------HHHHhcCchhhH
Q 002549 656 QKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLL-------QALIVDGRLNEL 728 (909)
Q Consensus 656 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~-------~~~~~~g~~~~A 728 (909)
+.|++.+...++.. .+...++....+|...|++.++...-+..++.|-. ....++.+. .+|.+.++++.+
T Consensus 241 ~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~a 317 (539)
T KOG0548|consen 241 ETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGA 317 (539)
T ss_pred HHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHH
Confidence 88888888887762 56667777778888888888888887777776644 333333333 345556777888
Q ss_pred HHHHHHHHhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchH-HHHHHHHHHHhccCchHHHHHHHHHHHH
Q 002549 729 YVVIQELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYHGMKAAGYFPTM-YLYRVMSGLFCKGKRVRDVEAMVSEMKE 807 (909)
Q Consensus 729 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 807 (909)
+..|++.......|+. ..+....+++.+..+...-. .|.. .-...-+..+.+.|++..|+..+.++++
T Consensus 318 i~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~--~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIk 386 (539)
T KOG0548|consen 318 IKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYI--NPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIK 386 (539)
T ss_pred HHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhh--ChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Confidence 8888776654444332 22233344444444444332 2322 1112235667789999999999999998
Q ss_pred CCCCC-CHHhHHHHHHHhhccCCHHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 002549 808 AGFKP-DLSIWNSMLKLYTGIEDFKKTIQVYQEIQEADLQPDE-DSFNTLIIMYCRDCRPEEGLSLMHEMRKL 878 (909)
Q Consensus 808 ~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 878 (909)
. .| |...|.....+|.+.|++..|+.-.+..++ ++|+. ..|..-+.++....+|++|.+.|++..+.
T Consensus 387 r--~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ie--L~p~~~kgy~RKg~al~~mk~ydkAleay~eale~ 455 (539)
T KOG0548|consen 387 R--DPEDARLYSNRAACYLKLGEYPEALKDAKKCIE--LDPNFIKAYLRKGAALRAMKEYDKALEAYQEALEL 455 (539)
T ss_pred c--CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4 45 457888899999999999999999999999 88975 78888899999999999999999998754
No 93
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=5e-08 Score=98.69 Aligned_cols=237 Identities=14% Similarity=0.096 Sum_probs=164.9
Q ss_pred HHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHH------
Q 002549 606 YRSMVVAYCKMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNA------ 679 (909)
Q Consensus 606 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~------ 679 (909)
...+..+..+..+++.|++-++.++. +. .+..-+...+.+|...|.+.+......+..+.|.. ...-++.
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~e--l~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~ 302 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALE--LA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALA 302 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHh--Hh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHH
Confidence 34455555566667777777777766 34 56667777777888888888877777776665432 2222222
Q ss_pred -HHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCchhhHHHHHHHHHhCCCCccHHHHHHHHHHHHhcC
Q 002549 680 -LIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQALIVDGRLNELYVVIQELQDMDFKISKSSILLMLDAFARSG 758 (909)
Q Consensus 680 -l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 758 (909)
++.+|.+.++++.|+..|.+.+...-.|+.. .+....++++.......-.+... ..-...-.+.+.+.|
T Consensus 303 r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~~a~~~pe~-A~e~r~kGne~Fk~g 372 (539)
T KOG0548|consen 303 RLGNAYTKREDYEGAIKYYQKALTEHRTPDLL---------SKLKEAEKALKEAERKAYINPEK-AEEEREKGNEAFKKG 372 (539)
T ss_pred HhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHH---------HHHHHHHHHHHHHHHHHhhChhH-HHHHHHHHHHHHhcc
Confidence 3446777899999999999988765554432 22233455555444443333222 122223467788999
Q ss_pred CHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccCchHHHHHHHHHHHHCCCCCCH-HhHHHHHHHhhccCCHHHHHHHH
Q 002549 759 NIFEVKKIYHGMKAAGYFPTMYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDL-SIWNSMLKLYTGIEDFKKTIQVY 837 (909)
Q Consensus 759 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~ 837 (909)
++..|...|.+++... +.|...|....-+|.+.|.+..|++-.+..++ ..|+. ..|.-=+.++....++++|++.|
T Consensus 373 dy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ie--L~p~~~kgy~RKg~al~~mk~ydkAleay 449 (539)
T KOG0548|consen 373 DYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIE--LDPNFIKAYLRKGAALRAMKEYDKALEAY 449 (539)
T ss_pred CHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999865 34788999999999999999999999999888 45665 45666677777778999999999
Q ss_pred HHHHHcCCCCCh-hhHHHHHHHHHh
Q 002549 838 QEIQEADLQPDE-DSFNTLIIMYCR 861 (909)
Q Consensus 838 ~~~~~~~~~p~~-~~~~~l~~~~~~ 861 (909)
++.++ .+|+. .....+..++..
T Consensus 450 ~eale--~dp~~~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 450 QEALE--LDPSNAEAIDGYRRCVEA 472 (539)
T ss_pred HHHHh--cCchhHHHHHHHHHHHHH
Confidence 99999 88976 455566666654
No 94
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.24 E-value=5.5e-09 Score=93.74 Aligned_cols=197 Identities=10% Similarity=0.042 Sum_probs=127.7
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHH
Q 002549 641 IYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQALI 720 (909)
Q Consensus 641 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 720 (909)
+...++-.|...|+...|..-++++++. .|.+..+|..+...|...|+.+.|.+.|+++++..|+ +-...|+....+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~-DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEH-DPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHH
Confidence 4556777888889999999999998887 6777888888899999999999999999999998777 6777888888888
Q ss_pred hcCchhhHHHHHHHHHhCCCCcc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-hHHHHHHHHHHHhccCchHHH
Q 002549 721 VDGRLNELYVVIQELQDMDFKIS-KSSILLMLDAFARSGNIFEVKKIYHGMKAAGYFP-TMYLYRVMSGLFCKGKRVRDV 798 (909)
Q Consensus 721 ~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A 798 (909)
..|++++|.+.|++......-+. ..++..+.-+..+.|+.+.|...|++.++.. | .....-.+.....+.|++-.|
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d--p~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD--PQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC--cCCChHHHHHHHHHHhcccchHH
Confidence 88888888888888776543222 3455555555555566666666666555532 2 122333444444555555555
Q ss_pred HHHHHHHHHCCCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHH
Q 002549 799 EAMVSEMKEAGFKPDLSIWNSMLKLYTGIEDFKKTIQVYQEIQE 842 (909)
Q Consensus 799 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 842 (909)
...++.....+ .+...+.-..+..-...||-+.|-++=.++..
T Consensus 193 r~~~~~~~~~~-~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 193 RLYLERYQQRG-GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHHHHhcc-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 55555554422 23333333333344444555555444444444
No 95
>PF13041 PPR_2: PPR repeat family
Probab=99.24 E-value=1.8e-11 Score=85.27 Aligned_cols=50 Identities=34% Similarity=0.665 Sum_probs=44.7
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChHHHHHHHHHHHH
Q 002549 112 DTVQVYNAMMGIYARNGRFQKVQELLDLMRKRGCEPDLVSFNTLINARLR 161 (909)
Q Consensus 112 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 161 (909)
|++.+||++|++|++.|++++|+++|++|.+.|+.||..||+++|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 57889999999999999999999999999999999999999999998874
No 96
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.24 E-value=2.7e-08 Score=105.57 Aligned_cols=258 Identities=11% Similarity=-0.008 Sum_probs=135.7
Q ss_pred hhcCChhhHHHHHHHHHHcCCCCCCchHHHHHHHHh----hhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCC
Q 002549 614 CKMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAY----GRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGC 689 (909)
Q Consensus 614 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 689 (909)
...|++++|...++++++ ..|++..++.. +..+ ...+....+.+.+...... .+........++..+...|+
T Consensus 54 ~~~g~~~~A~~~~~~~l~--~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~a~~~~~~G~ 129 (355)
T cd05804 54 WIAGDLPKALALLEQLLD--DYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPE-NPDYWYLLGMLAFGLEEAGQ 129 (355)
T ss_pred HHcCCHHHHHHHHHHHHH--HCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcC-CCCcHHHHHHHHHHHHHcCC
Confidence 444555555555555554 34444433331 1111 1223333333333331111 22233444455566666777
Q ss_pred HHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCchhhHHHHHHHHHhCCCC-ccH--HHHHHHHHHHHhcCCHHHHHHH
Q 002549 690 YERARAVFNTMMRDGPSPTVDSINGLLQALIVDGRLNELYVVIQELQDMDFK-ISK--SSILLMLDAFARSGNIFEVKKI 766 (909)
Q Consensus 690 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~--~~~~~l~~~~~~~g~~~~a~~~ 766 (909)
+++|...+++.++..|. +...+..+..++...|++++|..++++....... ++. ..+..+...+...|++++|..+
T Consensus 130 ~~~A~~~~~~al~~~p~-~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~ 208 (355)
T cd05804 130 YDRAEEAARRALELNPD-DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAI 208 (355)
T ss_pred HHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHH
Confidence 77777777777766554 4455566666677777777777777666554321 121 2334566667777777777777
Q ss_pred HHHHHhcCC-CchHHHH-H--HHHHHHhccCchHHHHHH--HHHHHHCCCCCCH---HhHHHHHHHhhccCCHHHHHHHH
Q 002549 767 YHGMKAAGY-FPTMYLY-R--VMSGLFCKGKRVRDVEAM--VSEMKEAGFKPDL---SIWNSMLKLYTGIEDFKKTIQVY 837 (909)
Q Consensus 767 ~~~~~~~~~-~p~~~~~-~--~l~~~~~~~g~~~~A~~~--~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~ 837 (909)
+++...... .+..... + .+...+...|..+.+.++ +...... ..|+. ........++...|+.++|...+
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L 287 (355)
T cd05804 209 YDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAW-HFPDHGLAFNDLHAALALAGAGDKDALDKLL 287 (355)
T ss_pred HHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHh-hcCcccchHHHHHHHHHHhcCCCHHHHHHHH
Confidence 777654221 1111111 1 233334444443333333 2111111 11111 22234556677888999999999
Q ss_pred HHHHHcCCC-------C-ChhhHHHHHHHHHhcCChhhHHHHHHHHHH
Q 002549 838 QEIQEADLQ-------P-DEDSFNTLIIMYCRDCRPEEGLSLMHEMRK 877 (909)
Q Consensus 838 ~~~~~~~~~-------p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 877 (909)
+.+...... + ........+.++...|++++|.+.+.+...
T Consensus 288 ~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~ 335 (355)
T cd05804 288 AALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRD 335 (355)
T ss_pred HHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 888653211 1 123344566778889999999999988875
No 97
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.24 E-value=1.7e-08 Score=107.71 Aligned_cols=53 Identities=15% Similarity=0.139 Sum_probs=39.1
Q ss_pred HHHHHHhcC-ChhhHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHhhc
Q 002549 855 LIIMYCRDC-RPEEGLSLMHEMRKLGLEPKLDTYKSLISAFGKQQQLEQAEELLK 908 (909)
Q Consensus 855 l~~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 908 (909)
.+.-+.+.. -.++|.++++-+.+.+ ..+..+|..-.+.|.+.|++=-|.+-+.
T Consensus 462 ~GekL~~t~dPLe~A~kfl~pL~~~a-~~~~et~~laFeVy~Rk~K~LLaLqaL~ 515 (517)
T PF12569_consen 462 LGEKLLKTEDPLEEAMKFLKPLLELA-PDNIETHLLAFEVYLRKGKYLLALQALK 515 (517)
T ss_pred cHHHHhcCCcHHHHHHHHHHHHHHhC-ccchhhHHHHhHHHHhcCcHHHHHHHHH
Confidence 444455554 3688999999888653 2357788888899999999988887654
No 98
>PF13041 PPR_2: PPR repeat family
Probab=99.22 E-value=3.2e-11 Score=84.00 Aligned_cols=49 Identities=47% Similarity=0.817 Sum_probs=24.0
Q ss_pred CCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 002549 219 PDLWTYNAMISVYGRCGLFEKAEQLFKELESKGFFPDAVTYNSLLYAFA 267 (909)
Q Consensus 219 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~ 267 (909)
||+++||++|++|++.|++++|.++|++|.+.|+.||..||+.+|++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4444444444444444444444444444444444444444444444443
No 99
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.17 E-value=3.3e-08 Score=91.69 Aligned_cols=195 Identities=13% Similarity=0.104 Sum_probs=122.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHH-HHHHHH
Q 002549 189 YNTIISACSRESNLEEAMKVYGDLEAHNCQPDLWTYNAMISVYGRCGLFEKAEQLFKELESKGFFPDAVTYNS-LLYAFA 267 (909)
Q Consensus 189 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~-ll~~~~ 267 (909)
+++.+.-+.+..++++|++++....+.. +.+....+.|..+|....++..|-+.++++-.. .|...-|.. -...+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence 3444444566778888888888777664 346777888888888888888888888888764 333333321 123455
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH--HHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 002549 268 REGNVEKVKEISENMLKMGFGKDEMTYNTIIH--MYGKQGQHDVALQLYRDMKLSGRNPDVVTYTVLIDSLGKANKISEA 345 (909)
Q Consensus 268 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 345 (909)
+.+.+..|+.+...|.+. ++...-..-+. .....+++..+..+.++.... .+..+.+...-...+.|++++|
T Consensus 90 ~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e---n~Ad~~in~gCllykegqyEaA 163 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE---NEADGQINLGCLLYKEGQYEAA 163 (459)
T ss_pred HhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC---CccchhccchheeeccccHHHH
Confidence 677788888888777642 22221111111 223557777777777766532 2333444444445677888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 002549 346 ANVMSEMLDASVKPTLRTYSALICGYAKAGNRLEAEKTFYCMRRSGIR 393 (909)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 393 (909)
++-|+...+-+.--+...|+..+.. .+.|+++.|.+...++.+.|++
T Consensus 164 vqkFqaAlqvsGyqpllAYniALaH-y~~~qyasALk~iSEIieRG~r 210 (459)
T KOG4340|consen 164 VQKFQAALQVSGYQPLLAYNLALAH-YSSRQYASALKHISEIIERGIR 210 (459)
T ss_pred HHHHHHHHhhcCCCchhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhh
Confidence 8888887765433355666665543 4567788888888888777653
No 100
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.12 E-value=8.8e-09 Score=104.95 Aligned_cols=256 Identities=12% Similarity=0.133 Sum_probs=189.7
Q ss_pred HHHHHhcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCCchHHHHHHHHhhhcCC
Q 002549 575 IHSCEYNERFAEASQVFSDMRFYNIEPSEDLYRSMVVAYCKMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKL 654 (909)
Q Consensus 575 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 654 (909)
..-+.+.|+..+|.-.|+..++.+ +-+...|..+.......++-..|+..+.++++ ++|++..++..|+-.|...|.
T Consensus 292 G~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~--LdP~NleaLmaLAVSytNeg~ 368 (579)
T KOG1125|consen 292 GCNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLE--LDPTNLEALMALAVSYTNEGL 368 (579)
T ss_pred HHHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHh--cCCccHHHHHHHHHHHhhhhh
Confidence 445678899999999999987653 33678899999999999999999999999998 999999999999999999999
Q ss_pred hHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCchhhHHHHHHH
Q 002549 655 WQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQALIVDGRLNELYVVIQE 734 (909)
Q Consensus 655 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 734 (909)
-.+|.+++.+-+... ++-. | +..+ ...++...- + ..++...+. +..++|-.
T Consensus 369 q~~Al~~L~~Wi~~~-p~y~--~--l~~a-~~~~~~~~~---------~-s~~~~~~l~-------------~i~~~fLe 419 (579)
T KOG1125|consen 369 QNQALKMLDKWIRNK-PKYV--H--LVSA-GENEDFENT---------K-SFLDSSHLA-------------HIQELFLE 419 (579)
T ss_pred HHHHHHHHHHHHHhC-ccch--h--cccc-CccccccCC---------c-CCCCHHHHH-------------HHHHHHHH
Confidence 999999999877652 2211 1 1100 001111100 0 111222222 22333333
Q ss_pred H-HhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc-hHHHHHHHHHHHhccCchHHHHHHHHHHHHCCCCC
Q 002549 735 L-QDMDFKISKSSILLMLDAFARSGNIFEVKKIYHGMKAAGYFP-TMYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKP 812 (909)
Q Consensus 735 ~-~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 812 (909)
+ .+.+.++|+.+...|.-.|.-.|++++|...|+.++.. .| |...||-|+..++...+.++|++.|.++++ ++|
T Consensus 420 aa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v--~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP 495 (579)
T KOG1125|consen 420 AARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQV--KPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQP 495 (579)
T ss_pred HHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhc--CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCC
Confidence 3 44555678888888888888999999999999999973 46 567999999999999999999999999998 789
Q ss_pred CH-HhHHHHHHHhhccCCHHHHHHHHHHHHHcCCCCC-----------hhhHHHHHHHHHhcCChhhH
Q 002549 813 DL-SIWNSMLKLYTGIEDFKKTIQVYQEIQEADLQPD-----------EDSFNTLIIMYCRDCRPEEG 868 (909)
Q Consensus 813 ~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-----------~~~~~~l~~~~~~~g~~~~A 868 (909)
+. .++..|+-.|...|.+++|.++|=.++. +.+. ...|-+|=.++.-.++.+-+
T Consensus 496 ~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~--mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l 561 (579)
T KOG1125|consen 496 GYVRVRYNLGISCMNLGAYKEAVKHLLEALS--MQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLL 561 (579)
T ss_pred CeeeeehhhhhhhhhhhhHHHHHHHHHHHHH--hhhcccccccCCcchHHHHHHHHHHHHHcCCchHH
Confidence 87 5677888899999999999999999887 3321 12444555555555555533
No 101
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.08 E-value=4.9e-07 Score=95.91 Aligned_cols=59 Identities=2% Similarity=0.049 Sum_probs=34.0
Q ss_pred HHHHHHhccCchHHHHHHHHHHHHCCCC-------CC-HHhHHHHHHHhhccCCHHHHHHHHHHHHH
Q 002549 784 VMSGLFCKGKRVRDVEAMVSEMKEAGFK-------PD-LSIWNSMLKLYTGIEDFKKTIQVYQEIQE 842 (909)
Q Consensus 784 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~-------p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 842 (909)
..+..+...|+.++|..+++.+...... .. ........-++...|+.++|++.+.+++.
T Consensus 269 ~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~ 335 (355)
T cd05804 269 HAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRD 335 (355)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4555566777777777777666542111 01 11122223345667888888888888776
No 102
>PLN02789 farnesyltranstransferase
Probab=99.07 E-value=6.4e-08 Score=97.42 Aligned_cols=240 Identities=10% Similarity=0.058 Sum_probs=164.8
Q ss_pred ccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCCchHHHHHHHHhhhcC-ChHHHHH
Q 002549 582 ERFAEASQVFSDMRFYNIEPSEDLYRSMVVAYCKMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLK-LWQKAES 660 (909)
Q Consensus 582 g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~ 660 (909)
+++.+|...|+.+.. ..+..++|+..+++++. +.|++.+++...+.++...| ++++++.
T Consensus 34 ~~~~~a~~~~ra~l~------------------~~e~serAL~lt~~aI~--lnP~~ytaW~~R~~iL~~L~~~l~eeL~ 93 (320)
T PLN02789 34 PEFREAMDYFRAVYA------------------SDERSPRALDLTADVIR--LNPGNYTVWHFRRLCLEALDADLEEELD 93 (320)
T ss_pred HHHHHHHHHHHHHHH------------------cCCCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHHcchhHHHHHH
Confidence 455666666655543 34566788888888877 78888888888888888887 5788888
Q ss_pred HHHHHHhcCCCCChHhHHHHHHHHHHcCCH--HHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCchhhHHHHHHHHHhC
Q 002549 661 LVGCLRQRCAPVDRKVWNALIKAYAASGCY--ERARAVFNTMMRDGPSPTVDSINGLLQALIVDGRLNELYVVIQELQDM 738 (909)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 738 (909)
.++++++. .|.+..+|+....++.+.|+. ++++.+++++++.+++ +..+|+....++...|+++++++.++++++.
T Consensus 94 ~~~~~i~~-npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~ 171 (320)
T PLN02789 94 FAEDVAED-NPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEE 171 (320)
T ss_pred HHHHHHHH-CCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 88888876 566777788777666666653 6778888888888877 7888888888888888888888888887776
Q ss_pred CCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccCchHHHHHHHHHHHHCCCCCC-HHhH
Q 002549 739 DFKISKSSILLMLDAFARSGNIFEVKKIYHGMKAAGYFPTMYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPD-LSIW 817 (909)
Q Consensus 739 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~ 817 (909)
+..... .++....++.+.|... + .....+++++...+++. ..|+ ...|
T Consensus 172 d~~N~s-AW~~R~~vl~~~~~l~------------~----------------~~~~~e~el~y~~~aI~--~~P~N~SaW 220 (320)
T PLN02789 172 DVRNNS-AWNQRYFVITRSPLLG------------G----------------LEAMRDSELKYTIDAIL--ANPRNESPW 220 (320)
T ss_pred CCCchh-HHHHHHHHHHhccccc------------c----------------ccccHHHHHHHHHHHHH--hCCCCcCHH
Confidence 644332 2222222211111000 0 00113466777777776 3554 4778
Q ss_pred HHHHHHhhcc----CCHHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcC------------------ChhhHHHHHHH
Q 002549 818 NSMLKLYTGI----EDFKKTIQVYQEIQEADLQPD-EDSFNTLIIMYCRDC------------------RPEEGLSLMHE 874 (909)
Q Consensus 818 ~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g------------------~~~~A~~~~~~ 874 (909)
+.+...+... ++..+|.+.+.++.+ ..|+ +.++..|++.|+... ..++|.++++.
T Consensus 221 ~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~--~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 298 (320)
T PLN02789 221 RYLRGLFKDDKEALVSDPEVSSVCLEVLS--KDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSE 298 (320)
T ss_pred HHHHHHHhcCCcccccchhHHHHHHHhhc--ccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHH
Confidence 8888888773 456779999999887 6775 477888999998642 23678888888
Q ss_pred HH
Q 002549 875 MR 876 (909)
Q Consensus 875 ~~ 876 (909)
+.
T Consensus 299 l~ 300 (320)
T PLN02789 299 LE 300 (320)
T ss_pred HH
Confidence 73
No 103
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.01 E-value=6.2e-07 Score=108.21 Aligned_cols=375 Identities=10% Similarity=0.005 Sum_probs=229.6
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhccCCcccchhhHHHHHHHHH
Q 002549 500 LLSILSSYNVSGRHLEACELIEFVKQHASESTPPLTQAFIIMLCKAQKLDAALEEYSNAWGFGFFSKSKTMYESLIHSCE 579 (909)
Q Consensus 500 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~ 579 (909)
.......+...|++.+|......+... .............+...|+++.+...++.+.... ...++.........+.
T Consensus 344 h~raa~~~~~~g~~~~Al~~a~~a~d~--~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~-~~~~~~l~~~~a~~~~ 420 (903)
T PRK04841 344 HRAAAEAWLAQGFPSEAIHHALAAGDA--QLLRDILLQHGWSLFNQGELSLLEECLNALPWEV-LLENPRLVLLQAWLAQ 420 (903)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHCCCH--HHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHH-HhcCcchHHHHHHHHH
Confidence 445566777888888877644433211 0011112223334556788887777776652211 1223334444555666
Q ss_pred hcccHHHHHHHHHHHHhCCCC------CCH--HHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCC----chHHHHHHH
Q 002549 580 YNERFAEASQVFSDMRFYNIE------PSE--DLYRSMVVAYCKMDFPETAHFIADQAEKKGIPFED----LSIYVDIID 647 (909)
Q Consensus 580 ~~g~~~~A~~~~~~m~~~~~~------p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~ 647 (909)
..|++++|...+......--. |.. .........+...|+++.|...++.++.. ....+ ......++.
T Consensus 421 ~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~lg~ 499 (903)
T PRK04841 421 SQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAE-LPLTWYYSRIVATSVLGE 499 (903)
T ss_pred HCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc-CCCccHHHHHHHHHHHHH
Confidence 788999999888877542111 111 11222233456788999999999988763 12112 234456777
Q ss_pred HhhhcCChHHHHHHHHHHHhcCCC---C--ChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---CCC----cccHHHH
Q 002549 648 AYGRLKLWQKAESLVGCLRQRCAP---V--DRKVWNALIKAYAASGCYERARAVFNTMMRDGP---SPT----VDSINGL 715 (909)
Q Consensus 648 ~~~~~~~~~~A~~~~~~~~~~~~~---~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~----~~~~~~l 715 (909)
.+...|++++|...++++...... + ....+..+...+...|+++.|...+++.+.... .++ ...+..+
T Consensus 500 ~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 579 (903)
T PRK04841 500 VHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIR 579 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHH
Confidence 788899999999999887643111 1 123445667778888999999999988776411 111 1223445
Q ss_pred HHHHHhcCchhhHHHHHHHHHhCC--CCc--cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCchHH--H-H-HHH
Q 002549 716 LQALIVDGRLNELYVVIQELQDMD--FKI--SKSSILLMLDAFARSGNIFEVKKIYHGMKAA--GYFPTMY--L-Y-RVM 785 (909)
Q Consensus 716 ~~~~~~~g~~~~A~~~~~~~~~~~--~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~p~~~--~-~-~~l 785 (909)
...+...|++++|...+.+..... ..+ ....+..+..++...|++++|...+...... ....... . . ...
T Consensus 580 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~ 659 (903)
T PRK04841 580 AQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVR 659 (903)
T ss_pred HHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHH
Confidence 566777899999998888775431 111 2334444666778889999999988888652 1111110 0 0 112
Q ss_pred HHHHhccCchHHHHHHHHHHHHCCCCCCHHh----HHHHHHHhhccCCHHHHHHHHHHHHHc----CCCCCh-hhHHHHH
Q 002549 786 SGLFCKGKRVRDVEAMVSEMKEAGFKPDLSI----WNSMLKLYTGIEDFKKTIQVYQEIQEA----DLQPDE-DSFNTLI 856 (909)
Q Consensus 786 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~----~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~~-~~~~~l~ 856 (909)
...+...|+.+.|.+++....... ...... +..+..++...|+.++|...+++++.. |..++. .+...++
T Consensus 660 ~~~~~~~g~~~~A~~~l~~~~~~~-~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la 738 (903)
T PRK04841 660 LIYWQMTGDKEAAANWLRQAPKPE-FANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLN 738 (903)
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCC-CccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 234456788888888877765321 111111 345666778889999999999988763 222222 4667788
Q ss_pred HHHHhcCChhhHHHHHHHHHHcC
Q 002549 857 IMYCRDCRPEEGLSLMHEMRKLG 879 (909)
Q Consensus 857 ~~~~~~g~~~~A~~~~~~~~~~~ 879 (909)
.++.+.|+.++|...+.++.+..
T Consensus 739 ~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 739 QLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHh
Confidence 88899999999999999998754
No 104
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.99 E-value=4.7e-07 Score=84.20 Aligned_cols=429 Identities=13% Similarity=0.096 Sum_probs=221.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHH-H
Q 002549 360 TLRTYSALICGYAKAGNRLEAEKTFYCMRRSGIRPDHLAYSVMLDIFLRFNETNKAMMLYQEMVSNGFTPDQALYEIM-I 438 (909)
Q Consensus 360 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l-l 438 (909)
...-+++++....+..++.+|.+++..-.+... .+....+.|..+|....++..|...++++-.. .|...-|... .
T Consensus 9 ~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~p-~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~A 85 (459)
T KOG4340|consen 9 PEGEFTAVVYRLIRDARYADAIQLLGSELERSP-RSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQA 85 (459)
T ss_pred CCCchHHHHHHHHHHhhHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHH
Confidence 334466777777888888888888887776531 36667777888888888888888888888653 6666555432 3
Q ss_pred HHHhcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHhcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 002549 439 GVLGRENKGEEIRKVVRDMKELSGINMQEISSILVKGECYDHAAEILRSAIRNGIELDHEKLLSILSSYNVSGRHLEACE 518 (909)
Q Consensus 439 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~a~~ 518 (909)
..+.+.+.+.+|++++..+.+.+ +- -...+..-.......+++..+..
T Consensus 86 QSLY~A~i~ADALrV~~~~~D~~----~L----------------------------~~~~lqLqaAIkYse~Dl~g~rs 133 (459)
T KOG4340|consen 86 QSLYKACIYADALRVAFLLLDNP----AL----------------------------HSRVLQLQAAIKYSEGDLPGSRS 133 (459)
T ss_pred HHHHHhcccHHHHHHHHHhcCCH----HH----------------------------HHHHHHHHHHHhcccccCcchHH
Confidence 45666777777777766554310 00 00001111112234566666666
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhccCCcccchhhHHHHHHHHHhcccHHHHHHHHHHHHhCC
Q 002549 519 LIEFVKQHASESTPPLTQAFIIMLCKAQKLDAALEEYSNAWGFGFFSKSKTMYESLIHSCEYNERFAEASQVFSDMRFYN 598 (909)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 598 (909)
+.++... ..+........-...+.|++++|++-|+.+.+.+.+.| ..+| .+.-+..+.|+++.|++...++++.|
T Consensus 134 LveQlp~---en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqp-llAY-niALaHy~~~qyasALk~iSEIieRG 208 (459)
T KOG4340|consen 134 LVEQLPS---ENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQP-LLAY-NLALAHYSSRQYASALKHISEIIERG 208 (459)
T ss_pred HHHhccC---CCccchhccchheeeccccHHHHHHHHHHHHhhcCCCc-hhHH-HHHHHHHhhhhHHHHHHHHHHHHHhh
Confidence 6665442 22344445555667789999999999999988774433 2333 44556667899999999999999887
Q ss_pred CCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHH
Q 002549 599 IEPSEDLYRSMVVAYCKMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWN 678 (909)
Q Consensus 599 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 678 (909)
++..++.- .|..- .|++...+ ++ -..+.... -+..+|
T Consensus 209 ~r~HPElg---------IGm~t-----------egiDvrsv------gN----------t~~lh~Sa-------l~eAfN 245 (459)
T KOG4340|consen 209 IRQHPELG---------IGMTT-----------EGIDVRSV------GN----------TLVLHQSA-------LVEAFN 245 (459)
T ss_pred hhcCCccC---------cccee-----------ccCchhcc------cc----------hHHHHHHH-------HHHHhh
Confidence 65432210 00000 00000000 00 00000000 112233
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCcccHHHHHHHHHhcCchhhHHHHHHHHHhCCCCccHHHHHHHHHHHHhc
Q 002549 679 ALIKAYAASGCYERARAVFNTMMRDG-PSPTVDSINGLLQALIVDGRLNELYVVIQELQDMDFKISKSSILLMLDAFARS 757 (909)
Q Consensus 679 ~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 757 (909)
.-...+.+.|+++.|.+.+-.|--+. .+.|++|...+.. .-..+++.+..+-++-+.+.+. ....||..++-.||+.
T Consensus 246 LKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al-~n~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKN 323 (459)
T KOG4340|consen 246 LKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQAL-MNMDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKN 323 (459)
T ss_pred hhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHH-hcccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhh
Confidence 33334445555555555555552211 1123344433321 1123344444444554444432 3445565666666666
Q ss_pred CCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhccCchHHHHHHHHHHHHCCCCCCHHhHHHHHHHhhccCC---HHHH
Q 002549 758 GNIFEVKKIYHGMKAAGYF-PTMYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDLSIWNSMLKLYTGIED---FKKT 833 (909)
Q Consensus 758 g~~~~a~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~---~~~A 833 (909)
.-++-|..++.+-....+. .+.+.|+.|=......-..++|++-++.+... +.........-+.--...++ ...|
T Consensus 324 eyf~lAADvLAEn~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~La~~-l~~kLRklAi~vQe~r~~~dd~a~R~a 402 (459)
T KOG4340|consen 324 EYFDLAADVLAENAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGLAGM-LTEKLRKLAIQVQEARHNRDDEAIRKA 402 (459)
T ss_pred HHHhHHHHHHhhCcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 6666555555433221111 23344443332223334455555544443220 00000000001111111111 2234
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 002549 834 IQVYQEIQEADLQPDEDSFNTLIIMYCRDCRPEEGLSLMHEMRKL 878 (909)
Q Consensus 834 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 878 (909)
++-|++.++. --.+....++.|++..++..+.+.|+.-.+.
T Consensus 403 i~~Yd~~LE~----YLPVlMa~AkiyW~~~Dy~~vEk~Fr~Svef 443 (459)
T KOG4340|consen 403 VNEYDETLEK----YLPVLMAQAKIYWNLEDYPMVEKIFRKSVEF 443 (459)
T ss_pred HHHHHHHHHH----HHHHHHHHHHhhccccccHHHHHHHHHHHhh
Confidence 4444444441 1135556788999999999999999988754
No 105
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.91 E-value=3.9e-08 Score=97.72 Aligned_cols=254 Identities=13% Similarity=0.139 Sum_probs=163.5
Q ss_pred HHHhhcCChhhHHHHHHHHHHcCCCC-CCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCC
Q 002549 611 VAYCKMDFPETAHFIADQAEKKGIPF-EDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGC 689 (909)
Q Consensus 611 ~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 689 (909)
..+.-.|++..++.-.+ .. ...+ ........+.+++...|+++.++ ..+... .+|.......+...+...++
T Consensus 9 rn~fy~G~Y~~~i~e~~--~~-~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~-~~~~l~av~~la~y~~~~~~ 81 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS--LK-SFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKS-SSPELQAVRLLAEYLSSPSD 81 (290)
T ss_dssp HHHHCTT-HHHHCHHHH--CH-TSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TT-SSCCCHHHHHHHHHHCTSTT
T ss_pred HHHHHhhhHHHHHHHhh--cc-CCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccC-CChhHHHHHHHHHHHhCccc
Confidence 44556788888886555 22 1222 23556677888899999877654 333333 35566666666555544355
Q ss_pred HHHHHHHHHHHHHcCCCCCcccHH-HHHHHHHhcCchhhHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHH
Q 002549 690 YERARAVFNTMMRDGPSPTVDSIN-GLLQALIVDGRLNELYVVIQELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYH 768 (909)
Q Consensus 690 ~~~A~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 768 (909)
-+.++.-++..+.....++..++. .....+...|++++|++++..- .+.......+.++.+.++++.|.+.++
T Consensus 82 ~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~ 155 (290)
T PF04733_consen 82 KESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELK 155 (290)
T ss_dssp HHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHH
Confidence 666666665554333221222222 2234566789999999888652 344555667889999999999999999
Q ss_pred HHHhcCCCchHH---HHHHHHHHHhccCchHHHHHHHHHHHHCCCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHcCC
Q 002549 769 GMKAAGYFPTMY---LYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDLSIWNSMLKLYTGIEDFKKTIQVYQEIQEADL 845 (909)
Q Consensus 769 ~~~~~~~~p~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 845 (909)
.|.+.+ .|.. ...+.+..+.-.+.+.+|.-+|+++.+. +.++..+.+.+..++...|++++|.+.++++++ .
T Consensus 156 ~~~~~~--eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~--~ 230 (290)
T PF04733_consen 156 NMQQID--EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALE--K 230 (290)
T ss_dssp HHHCCS--CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCC--C
T ss_pred HHHhcC--CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--h
Confidence 998743 3322 1223333333345789999999998663 567778888999999999999999999999887 6
Q ss_pred CCC-hhhHHHHHHHHHhcCCh-hhHHHHHHHHHHcCCCCCh
Q 002549 846 QPD-EDSFNTLIIMYCRDCRP-EEGLSLMHEMRKLGLEPKL 884 (909)
Q Consensus 846 ~p~-~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~p~~ 884 (909)
+|+ +.++.+++-+....|+. +.+.+++.++.+. .|+.
T Consensus 231 ~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~--~p~h 269 (290)
T PF04733_consen 231 DPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS--NPNH 269 (290)
T ss_dssp -CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH--TTTS
T ss_pred ccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh--CCCC
Confidence 774 57888898888888988 6778888888753 5553
No 106
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.90 E-value=9.6e-08 Score=94.92 Aligned_cols=223 Identities=17% Similarity=0.146 Sum_probs=106.7
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhccCCcccchhhHHHHHHHHH
Q 002549 500 LLSILSSYNVSGRHLEACELIEFVKQHASESTPPLTQAFIIMLCKAQKLDAALEEYSNAWGFGFFSKSKTMYESLIHSCE 579 (909)
Q Consensus 500 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~ 579 (909)
...+.+++...|+.+.++. .+.... .+.......+...+...++-+.++..++........+.++.........+.
T Consensus 38 ~~~~~Rs~iAlg~~~~vl~---ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~ 113 (290)
T PF04733_consen 38 DFYQYRSYIALGQYDSVLS---EIKKSS-SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILF 113 (290)
T ss_dssp HHHHHHHHHHTT-HHHHHH---HS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCChhHHHH---HhccCC-ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHH
Confidence 3444556666666554332 222222 222222233333333334444555555444332211122222222223444
Q ss_pred hcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCCchHHHHHHHHh--hhc--CCh
Q 002549 580 YNERFAEASQVFSDMRFYNIEPSEDLYRSMVVAYCKMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAY--GRL--KLW 655 (909)
Q Consensus 580 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~--~~~ 655 (909)
..|++++|+++++.. .+.+.....+..+.+.++++.|...++.+.+ +..+ .+...++.++ ... +++
T Consensus 114 ~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~--~~eD--~~l~qLa~awv~l~~g~e~~ 183 (290)
T PF04733_consen 114 HEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ--IDED--SILTQLAEAWVNLATGGEKY 183 (290)
T ss_dssp CCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC--CSCC--HHHHHHHHHHHHHHHTTTCC
T ss_pred HcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCc--HHHHHHHHHHHHHHhCchhH
Confidence 456666666655432 2344555555666666666666666666554 2222 2233333322 222 356
Q ss_pred HHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCch-hhHHHHHHH
Q 002549 656 QKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQALIVDGRL-NELYVVIQE 734 (909)
Q Consensus 656 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~ 734 (909)
++|..+|+++.+. +++++.+.|.++.++...|++++|.+++.++++.++. +..++.+++-+....|+. +.+.+.+.+
T Consensus 184 ~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~~~~~~~~l~q 261 (290)
T PF04733_consen 184 QDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKPTEAAERYLSQ 261 (290)
T ss_dssp CHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence 6777777776554 4566666777777777777777777777776666555 555555566555555655 334455555
Q ss_pred HHhC
Q 002549 735 LQDM 738 (909)
Q Consensus 735 ~~~~ 738 (909)
+.+.
T Consensus 262 L~~~ 265 (290)
T PF04733_consen 262 LKQS 265 (290)
T ss_dssp CHHH
T ss_pred HHHh
Confidence 5543
No 107
>PLN02789 farnesyltranstransferase
Probab=98.90 E-value=9e-07 Score=89.23 Aligned_cols=205 Identities=12% Similarity=0.037 Sum_probs=142.4
Q ss_pred hcCCHHHHHHHHHHhhccCCcccchhhHHHHHHHHHhcc-cHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCh--h
Q 002549 544 KAQKLDAALEEYSNAWGFGFFSKSKTMYESLIHSCEYNE-RFAEASQVFSDMRFYNIEPSEDLYRSMVVAYCKMDFP--E 620 (909)
Q Consensus 544 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~--~ 620 (909)
..+..++|+..++.+.+.. |.+..+|+....++...| ++++++..++.+.+... .+..+|..-...+.+.+.. +
T Consensus 49 ~~e~serAL~lt~~aI~ln--P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np-knyqaW~~R~~~l~~l~~~~~~ 125 (320)
T PLN02789 49 SDERSPRALDLTADVIRLN--PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP-KNYQIWHHRRWLAEKLGPDAAN 125 (320)
T ss_pred cCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC-cchHHhHHHHHHHHHcCchhhH
Confidence 4456677777777777665 667777777777777766 56788888887776432 2333444333334444542 5
Q ss_pred hHHHHHHHHHHcCCCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHc---CC----HHHH
Q 002549 621 TAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAAS---GC----YERA 693 (909)
Q Consensus 621 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~----~~~A 693 (909)
++..+++.++. .+|.+..++...+.++...|++++|++.++++++. .+.+..+|+....++.+. |. .+++
T Consensus 126 ~el~~~~kal~--~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~-d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~e 202 (320)
T PLN02789 126 KELEFTRKILS--LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE-DVRNNSAWNQRYFVITRSPLLGGLEAMRDSE 202 (320)
T ss_pred HHHHHHHHHHH--hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-CCCchhHHHHHHHHHHhccccccccccHHHH
Confidence 67777777776 78889999999999999999999999999998887 466778888877766554 22 2567
Q ss_pred HHHHHHHHHcCCCCCcccHHHHHHHHHhc----CchhhHHHHHHHHHhCCCCccHHHHHHHHHHHHh
Q 002549 694 RAVFNTMMRDGPSPTVDSINGLLQALIVD----GRLNELYVVIQELQDMDFKISKSSILLMLDAFAR 756 (909)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 756 (909)
++...+++...|. +..+|+.+...+... ++..+|.+.+.+..+.+ ..+...+..|++.|+.
T Consensus 203 l~y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 203 LKYTIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 8888888888887 788888888888763 34466777777766543 2334455566666654
No 108
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.89 E-value=0.00026 Score=76.98 Aligned_cols=234 Identities=14% Similarity=0.104 Sum_probs=141.6
Q ss_pred ChhhHHHHHHHhccCChHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCHHHHHHHHHH
Q 002549 44 TPTDYCFVVKWVGQVSWQRALEVYEWLNLRHWFSPNARMLATILAVLGKANQENLAVETFMRAESAVDDTVQVYNAMMGI 123 (909)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 123 (909)
....+..+...+..+++..|++....+..+++..+.+.++..++ +.|.|+.++|..+++......+.|..|-..+-.+
T Consensus 9 ~err~rpi~d~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLs--l~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~ 86 (932)
T KOG2053|consen 9 SERRLRPIYDLLDSSQFKKALAKLGKLLKKHPNALYAKVLKALS--LFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNV 86 (932)
T ss_pred HHHHHhHHHHHhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHH--HHHhcCchhHHHHHhhhccCCCCchHHHHHHHHH
Confidence 33445566677778889999999998877764444444443333 5688999999988876665556788999999999
Q ss_pred HHHcCChhHHHHHHHHHHHcCCCCChHHHHHHHHHHHHcCCCCc--hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 002549 124 YARNGRFQKVQELLDLMRKRGCEPDLVSFNTLINARLRSGAMVP--NLGVDLLNEVRRSGLRPDIITYNTIISACSRESN 201 (909)
Q Consensus 124 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 201 (909)
|.+.++.++|..++++.... .|+......++.++++.+.+.. ..|.+++. .++-+.+.+-++++.....-.
T Consensus 87 y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK-----~~pk~~yyfWsV~Slilqs~~ 159 (932)
T KOG2053|consen 87 YRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYK-----NFPKRAYYFWSVISLILQSIF 159 (932)
T ss_pred HHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hCCcccchHHHHHHHHHHhcc
Confidence 99999999999999998866 6777777788888888765421 11333333 233456777777776654321
Q ss_pred ----------HHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCCHhHHHHHH-HHHHHCCCCCCHHHHHHHHHHHHHc
Q 002549 202 ----------LEEAMKVYGDLEAHN-CQPDLWTYNAMISVYGRCGLFEKAEQLF-KELESKGFFPDAVTYNSLLYAFARE 269 (909)
Q Consensus 202 ----------~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~-~~m~~~~~~~~~~~~~~ll~~~~~~ 269 (909)
..-|...++.+.+.+ ..-+..-.-.-...+-..|++++|++++ ...-+.-..-+...-+.-+..+...
T Consensus 160 ~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l 239 (932)
T KOG2053|consen 160 SENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLL 239 (932)
T ss_pred CCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHh
Confidence 233444444444432 1111111222222334455566666655 2222222222333333444455555
Q ss_pred CCHHHHHHHHHHHHHCC
Q 002549 270 GNVEKVKEISENMLKMG 286 (909)
Q Consensus 270 g~~~~a~~~~~~~~~~~ 286 (909)
+++.+..++-.++...|
T Consensus 240 ~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 240 NRWQELFELSSRLLEKG 256 (932)
T ss_pred cChHHHHHHHHHHHHhC
Confidence 55555555555555544
No 109
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.89 E-value=6.3e-07 Score=100.27 Aligned_cols=259 Identities=11% Similarity=0.157 Sum_probs=176.9
Q ss_pred cccchhhHHHHHHHHHhcccHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHhhcCChhhHHHHHHHHHHcCCCCCCchHH
Q 002549 564 FSKSKTMYESLIHSCEYNERFAEASQVFSDMRFYNIEPSEDLY-RSMVVAYCKMDFPETAHFIADQAEKKGIPFEDLSIY 642 (909)
Q Consensus 564 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 642 (909)
.|.+...|..|+..+...+++++|.++.+...+ ..|+...+ ......+.+.++...+..+
T Consensus 27 ~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~--~~P~~i~~yy~~G~l~~q~~~~~~~~lv----------------- 87 (906)
T PRK14720 27 SLSKFKELDDLIDAYKSENLTDEAKDICEEHLK--EHKKSISALYISGILSLSRRPLNDSNLL----------------- 87 (906)
T ss_pred CcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCCcceehHHHHHHHHHhhcchhhhhhh-----------------
Confidence 377888999999999999999999999987665 35655443 3333355555554433322
Q ss_pred HHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhc
Q 002549 643 VDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQALIVD 722 (909)
Q Consensus 643 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 722 (909)
.++.......++.-...++..+.+ .+.+..++..++.+|-+.|+.++|..+++++++.++. |....|.++..|...
T Consensus 88 -~~l~~~~~~~~~~~ve~~~~~i~~--~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~ 163 (906)
T PRK14720 88 -NLIDSFSQNLKWAIVEHICDKILL--YGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE 163 (906)
T ss_pred -hhhhhcccccchhHHHHHHHHHHh--hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh
Confidence 345555566667555555555555 3556678888999999999999999999999998877 888899999888888
Q ss_pred CchhhHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccCchHHHHHHH
Q 002549 723 GRLNELYVVIQELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYHGMKAAGYFPTMYLYRVMSGLFCKGKRVRDVEAMV 802 (909)
Q Consensus 723 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 802 (909)
+.++|.+++.+... .+...+++.++.++|.++.... |+ +.+.-..+.
T Consensus 164 -dL~KA~~m~~KAV~---------------~~i~~kq~~~~~e~W~k~~~~~--~~---------------d~d~f~~i~ 210 (906)
T PRK14720 164 -DKEKAITYLKKAIY---------------RFIKKKQYVGIEEIWSKLVHYN--SD---------------DFDFFLRIE 210 (906)
T ss_pred -hHHHHHHHHHHHHH---------------HHHhhhcchHHHHHHHHHHhcC--cc---------------cchHHHHHH
Confidence 89999988888553 3556668888888888888743 22 122223333
Q ss_pred HHHHHC-CCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCChhhHHHHHHHHHH-cC
Q 002549 803 SEMKEA-GFKPDLSIWNSMLKLYTGIEDFKKTIQVYQEIQEADLQPD-EDSFNTLIIMYCRDCRPEEGLSLMHEMRK-LG 879 (909)
Q Consensus 803 ~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~ 879 (909)
+.+... ++.--..++.-+-..|...+++++++.+++.+++ +.|+ ..+...++.+|. ++|.. ...+++..+ .+
T Consensus 211 ~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~--~~~~n~~a~~~l~~~y~--~kY~~-~~~~ee~l~~s~ 285 (906)
T PRK14720 211 RKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILE--HDNKNNKAREELIRFYK--EKYKD-HSLLEDYLKMSD 285 (906)
T ss_pred HHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHh--cCCcchhhHHHHHHHHH--HHccC-cchHHHHHHHhc
Confidence 333321 2222334556666777788899999999999999 8885 488888999887 44433 444444443 34
Q ss_pred CCCC
Q 002549 880 LEPK 883 (909)
Q Consensus 880 ~~p~ 883 (909)
+.-+
T Consensus 286 l~~~ 289 (906)
T PRK14720 286 IGNN 289 (906)
T ss_pred cccC
Confidence 4433
No 110
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.87 E-value=8.1e-06 Score=98.63 Aligned_cols=371 Identities=10% Similarity=-0.060 Sum_probs=236.3
Q ss_pred HHHHhcccHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCH
Q 002549 470 SILVKGECYDHAAEILRSAIRNGIELDH-EKLLSILSSYNVSGRHLEACELIEFVKQHASESTPPLTQAFIIMLCKAQKL 548 (909)
Q Consensus 470 ~~~~~~~~~~~a~~~~~~~~~~~~~~d~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 548 (909)
..+...|.+.+|......+ +..+.. .............|+...+...+..+.......+..........+...|++
T Consensus 349 ~~~~~~g~~~~Al~~a~~a---~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~ 425 (903)
T PRK04841 349 EAWLAQGFPSEAIHHALAA---GDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRY 425 (903)
T ss_pred HHHHHCCCHHHHHHHHHHC---CCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCH
Confidence 4566778888777655443 211111 112223344556788888777776653221222233344555666788999
Q ss_pred HHHHHHHHHhhccCCc-----ccch--hhHHHHHHHHHhcccHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHhhcC
Q 002549 549 DAALEEYSNAWGFGFF-----SKSK--TMYESLIHSCEYNERFAEASQVFSDMRFYNIEPSE----DLYRSMVVAYCKMD 617 (909)
Q Consensus 549 ~~A~~~~~~~~~~~~~-----~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~l~~~~~~~~ 617 (909)
++|...+..+...-.. ++.. .....+...+...|++++|...+++....-...+. .....+...+...|
T Consensus 426 ~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G 505 (903)
T PRK04841 426 SEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKG 505 (903)
T ss_pred HHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcC
Confidence 9999999887543210 0111 11222334556789999999999987653212222 23344555677899
Q ss_pred ChhhHHHHHHHHHHcCCCCCC----chHHHHHHHHhhhcCChHHHHHHHHHHHhc----CCC---CChHhHHHHHHHHHH
Q 002549 618 FPETAHFIADQAEKKGIPFED----LSIYVDIIDAYGRLKLWQKAESLVGCLRQR----CAP---VDRKVWNALIKAYAA 686 (909)
Q Consensus 618 ~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~---~~~~~~~~l~~~~~~ 686 (909)
++++|...+.++....-...+ ......++.++...|++++|...+++..+. +.+ .....+..++..+..
T Consensus 506 ~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 585 (903)
T PRK04841 506 ELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWE 585 (903)
T ss_pred CHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHH
Confidence 999999999998763221111 345567788899999999999999987653 111 122345566777888
Q ss_pred cCCHHHHHHHHHHHHHcCCC--C--CcccHHHHHHHHHhcCchhhHHHHHHHHHhCC--CCccHH---HH-HHHHHHHHh
Q 002549 687 SGCYERARAVFNTMMRDGPS--P--TVDSINGLLQALIVDGRLNELYVVIQELQDMD--FKISKS---SI-LLMLDAFAR 756 (909)
Q Consensus 687 ~g~~~~A~~~~~~~~~~~~~--~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~---~~-~~l~~~~~~ 756 (909)
.|++++|...+.+....... + ....+..+...+...|++++|...+.+..... ...... .. ...+..+..
T Consensus 586 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 665 (903)
T PRK04841 586 WARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQM 665 (903)
T ss_pred hcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHH
Confidence 89999999999998764221 1 23334456677889999999999998886431 111111 11 112244556
Q ss_pred cCCHHHHHHHHHHHHhcCCCch---HHHHHHHHHHHhccCchHHHHHHHHHHHHC----CCCCCH-HhHHHHHHHhhccC
Q 002549 757 SGNIFEVKKIYHGMKAAGYFPT---MYLYRVMSGLFCKGKRVRDVEAMVSEMKEA----GFKPDL-SIWNSMLKLYTGIE 828 (909)
Q Consensus 757 ~g~~~~a~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~~-~~~~~l~~~~~~~g 828 (909)
.|+.+.|...+........... ...+..+...+...|+.++|...++++... |..++. .+...+..++...|
T Consensus 666 ~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G 745 (903)
T PRK04841 666 TGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQG 745 (903)
T ss_pred CCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcC
Confidence 8999999999877654221111 112456777888999999999999998652 222222 35666777889999
Q ss_pred CHHHHHHHHHHHHHc
Q 002549 829 DFKKTIQVYQEIQEA 843 (909)
Q Consensus 829 ~~~~A~~~~~~~~~~ 843 (909)
+.++|...+.++++.
T Consensus 746 ~~~~A~~~L~~Al~l 760 (903)
T PRK04841 746 RKSEAQRVLLEALKL 760 (903)
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999999994
No 111
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.86 E-value=0.00019 Score=73.35 Aligned_cols=208 Identities=9% Similarity=0.084 Sum_probs=142.6
Q ss_pred HHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhc---CchhhHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCCHHHHHHH
Q 002549 690 YERARAVFNTMMRDGPSPTVDSINGLLQALIVD---GRLNELYVVIQELQDMDFKISKSSILLMLDAFARSGNIFEVKKI 766 (909)
Q Consensus 690 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 766 (909)
.++|..++++.++.-...+...|..+...--.. .+.+.....++++.......-..+|..+++.-.+..-++.|+.+
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~i 388 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKI 388 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHH
Confidence 566777777766543332333333333211111 13556677777777655444455666677777788889999999
Q ss_pred HHHHHhcCCCc-hHHHHHHHHHHHhccCchHHHHHHHHHHHHCCCCCCH-HhHHHHHHHhhccCCHHHHHHHHHHHHHcC
Q 002549 767 YHGMKAAGYFP-TMYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDL-SIWNSMLKLYTGIEDFKKTIQVYQEIQEAD 844 (909)
Q Consensus 767 ~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 844 (909)
|.++.+.+..+ .+.++++++..||. ++..-|..+|+--+++ + +|. .-....+.-+...|+...|..+|++++..+
T Consensus 389 F~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkk-f-~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~ 465 (656)
T KOG1914|consen 389 FKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKK-F-GDSPEYVLKYLDFLSHLNDDNNARALFERVLTSV 465 (656)
T ss_pred HHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHh-c-CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhcc
Confidence 99999877777 78888899887764 6678899999887763 3 454 445666777788899999999999999877
Q ss_pred CCCCh--hhHHHHHHHHHhcCChhhHHHHHHHHHHc-C--CCCChhhHHHHHHHHhccCCH
Q 002549 845 LQPDE--DSFNTLIIMYCRDCRPEEGLSLMHEMRKL-G--LEPKLDTYKSLISAFGKQQQL 900 (909)
Q Consensus 845 ~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~--~~p~~~~~~~l~~~~~~~g~~ 900 (909)
+.|+. ..|..++.--..-|+.+-++++-+++... . ..|.-..-..+++-|.-.+.+
T Consensus 466 l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~ 526 (656)
T KOG1914|consen 466 LSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLY 526 (656)
T ss_pred CChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccc
Confidence 77764 78999998888899999999998877652 2 332222333455555544443
No 112
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.85 E-value=0.00036 Score=75.99 Aligned_cols=111 Identities=16% Similarity=0.178 Sum_probs=64.8
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH--HHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 002549 198 RESNLEEAMKVYGDLEAHNCQPDLWTYNAMIS--VYGRCGLFEKAEQLFKELESKGFFPDAVTYNSLLYAFAREGNVEKV 275 (909)
Q Consensus 198 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~--~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a 275 (909)
..+++..|....+.+.+.. |+.. |...+. .+.+.|+.++|..+++.....+.. |..|...+-..|...++.++|
T Consensus 21 d~~qfkkal~~~~kllkk~--Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKH--PNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred hhHHHHHHHHHHHHHHHHC--CCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHH
Confidence 4466677777776666542 3322 112222 245667777777666666555444 666666666666677777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 002549 276 KEISENMLKMGFGKDEMTYNTIIHMYGKQGQHDVALQLY 314 (909)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 314 (909)
..+++...... |+..-...+..+|.+.+++.+-.+.-
T Consensus 97 ~~~Ye~~~~~~--P~eell~~lFmayvR~~~yk~qQkaa 133 (932)
T KOG2053|consen 97 VHLYERANQKY--PSEELLYHLFMAYVREKSYKKQQKAA 133 (932)
T ss_pred HHHHHHHHhhC--CcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777666543 45555556666666666655543333
No 113
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.80 E-value=1e-06 Score=92.71 Aligned_cols=219 Identities=14% Similarity=0.065 Sum_probs=162.4
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHhhccCCcccchhhHHHHHHHHHhcccHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 002549 531 TPPLTQAFIIMLCKAQKLDAALEEYSNAWGFGFFSKSKTMYESLIHSCEYNERFAEASQVFSDMRFYNIEPSEDLYRSMV 610 (909)
Q Consensus 531 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 610 (909)
--.....+...+.+.|-...|+..|++.. .|...|.+|...|+.++|..+..+-.+ -+|++..|..++
T Consensus 397 ~Wq~q~~laell~slGitksAl~I~Erle----------mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LG 464 (777)
T KOG1128|consen 397 IWQLQRLLAELLLSLGITKSALVIFERLE----------MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLG 464 (777)
T ss_pred cchHHHHHHHHHHHcchHHHHHHHHHhHH----------HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhh
Confidence 33445566777788888888888887764 477788888888888888887777765 367777777777
Q ss_pred HHHhhcCChhhHHHHHHHHHHcCCCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCH
Q 002549 611 VAYCKMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCY 690 (909)
Q Consensus 611 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 690 (909)
+......-+++|.++.+.... .+...++....+.++++++.+.++...+. .|....+|..++.+..+.+++
T Consensus 465 Dv~~d~s~yEkawElsn~~sa--------rA~r~~~~~~~~~~~fs~~~~hle~sl~~-nplq~~~wf~~G~~ALqlek~ 535 (777)
T KOG1128|consen 465 DVLHDPSLYEKAWELSNYISA--------RAQRSLALLILSNKDFSEADKHLERSLEI-NPLQLGTWFGLGCAALQLEKE 535 (777)
T ss_pred hhccChHHHHHHHHHhhhhhH--------HHHHhhccccccchhHHHHHHHHHHHhhc-CccchhHHHhccHHHHHHhhh
Confidence 776666667777777654332 24455555566678888888888887776 566778888888888888888
Q ss_pred HHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCchhhHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 002549 691 ERARAVFNTMMRDGPSPTVDSINGLLQALIVDGRLNELYVVIQELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYHGM 770 (909)
Q Consensus 691 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 770 (909)
+.|.+.|.......|. +...||++..+|.+.|+-.+|...+++..+.+ ..+...+....-...+.|.+++|.+.++++
T Consensus 536 q~av~aF~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 536 QAAVKAFHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHHHHHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 8888888888887666 66778888888888888888888888888777 333334444445567788888888888888
Q ss_pred Hh
Q 002549 771 KA 772 (909)
Q Consensus 771 ~~ 772 (909)
.+
T Consensus 614 l~ 615 (777)
T KOG1128|consen 614 LD 615 (777)
T ss_pred HH
Confidence 75
No 114
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.78 E-value=3.2e-07 Score=102.05 Aligned_cols=132 Identities=10% Similarity=0.057 Sum_probs=89.4
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCch-HHHHHHHHHHHhccCchHHHHHHHHHHHHCCCCCCHH-hHH
Q 002549 741 KISKSSILLMLDAFARSGNIFEVKKIYHGMKAAGYFPT-MYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDLS-IWN 818 (909)
Q Consensus 741 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~ 818 (909)
..+...+..|..+..+.|.+++|..+++.+.+. .|+ ......++..+.+.+++++|+..+++++. ..|++. ...
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~ 158 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREIL 158 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHH
Confidence 444566666777777777777777777777763 353 44555666777777777777777777776 456653 445
Q ss_pred HHHHHhhccCCHHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 002549 819 SMLKLYTGIEDFKKTIQVYQEIQEADLQPD-EDSFNTLIIMYCRDCRPEEGLSLMHEMRKL 878 (909)
Q Consensus 819 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 878 (909)
.+..++...|++++|.++|++++. -.|+ ..++..++.++-..|+.++|...|++..+.
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~--~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSR--QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 555566666777777777777776 4665 367777777777777777777777777653
No 115
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.76 E-value=1.1e-06 Score=81.37 Aligned_cols=154 Identities=14% Similarity=0.147 Sum_probs=99.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccCchHHHHHHHHHHHHCCCCCCHHhHHHHHHHhhccCC
Q 002549 750 MLDAFARSGNIFEVKKIYHGMKAAGYFPTMYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDLSIWNSMLKLYTGIED 829 (909)
Q Consensus 750 l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 829 (909)
+...+.-.|+-+.+..+..+.... .+.+......++....+.|++.+|+..+.++... -+||...|+.++.+|-+.|+
T Consensus 72 ~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~Gr 149 (257)
T COG5010 72 LATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQLGR 149 (257)
T ss_pred HHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHccC
Confidence 334455555555555555554331 1234445555666777777777777777777663 24455677777777777777
Q ss_pred HHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHhhc
Q 002549 830 FKKTIQVYQEIQEADLQPD-EDSFNTLIIMYCRDCRPEEGLSLMHEMRKLGLEPKLDTYKSLISAFGKQQQLEQAEELLK 908 (909)
Q Consensus 830 ~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 908 (909)
+++|...|.++++ +.|+ +..+++++..|.-.|+++.|..++.+....+ ..|..+-..+..+....|++++|+.+..
T Consensus 150 ~~~Ar~ay~qAl~--L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 150 FDEARRAYRQALE--LAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred hhHHHHHHHHHHH--hccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 7777777777777 7774 4667777777777777777777777776442 2245555667777777777777776653
No 116
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.75 E-value=1.4e-06 Score=85.94 Aligned_cols=193 Identities=13% Similarity=0.071 Sum_probs=120.4
Q ss_pred CCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCCh---HhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcc-
Q 002549 635 PFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDR---KVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVD- 710 (909)
Q Consensus 635 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~- 710 (909)
.+..+..+..++..+...|++++|...++++++. .|.++ .++..++.++...|++++|...++++++..|.....
T Consensus 29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~-~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 107 (235)
T TIGR03302 29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESR-YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDAD 107 (235)
T ss_pred ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchH
Confidence 3455677888888888889999999988888775 34333 466778888888999999999999998876652221
Q ss_pred -cHHHHHHHHHhcCchhhHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchH-HHHHHHHHH
Q 002549 711 -SINGLLQALIVDGRLNELYVVIQELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYHGMKAAGYFPTM-YLYRVMSGL 788 (909)
Q Consensus 711 -~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~ 788 (909)
++..+..++... +...+...|+.++|.+.++++.+.. |+. ..+..+...
T Consensus 108 ~a~~~~g~~~~~~---------------------------~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~ 158 (235)
T TIGR03302 108 YAYYLRGLSNYNQ---------------------------IDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRM 158 (235)
T ss_pred HHHHHHHHHHHHh---------------------------cccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHH
Confidence 233344443332 0001222355666666666666532 321 111111110
Q ss_pred HhccCchHHHHHHHHHHHHCCCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHcCCCCC----hhhHHHHHHHHHhcCC
Q 002549 789 FCKGKRVRDVEAMVSEMKEAGFKPDLSIWNSMLKLYTGIEDFKKTIQVYQEIQEADLQPD----EDSFNTLIIMYCRDCR 864 (909)
Q Consensus 789 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~ 864 (909)
+..... .. .....+...|...|++++|+..++++++ ..|+ ...+..++.++.+.|+
T Consensus 159 ----~~~~~~------~~--------~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~a~~~l~~~~~~lg~ 218 (235)
T TIGR03302 159 ----DYLRNR------LA--------GKELYVARFYLKRGAYVAAINRFETVVE--NYPDTPATEEALARLVEAYLKLGL 218 (235)
T ss_pred ----HHHHHH------HH--------HHHHHHHHHHHHcCChHHHHHHHHHHHH--HCCCCcchHHHHHHHHHHHHHcCC
Confidence 000000 00 0112455567788888888888888887 4553 3577888888888899
Q ss_pred hhhHHHHHHHHHH
Q 002549 865 PEEGLSLMHEMRK 877 (909)
Q Consensus 865 ~~~A~~~~~~~~~ 877 (909)
+++|..+++.+..
T Consensus 219 ~~~A~~~~~~l~~ 231 (235)
T TIGR03302 219 KDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHHHHHHHh
Confidence 8888888888764
No 117
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.74 E-value=0.00047 Score=70.57 Aligned_cols=210 Identities=13% Similarity=0.009 Sum_probs=139.4
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcC---ChhhHHHHHHHHHHcCCCCCCchHHHHHHHHhhhcCChHHHHH
Q 002549 584 FAEASQVFSDMRFYNIEPSEDLYRSMVVAYCKMD---FPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAES 660 (909)
Q Consensus 584 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 660 (909)
.+++..+++..++.-..-+..+|..+...--..- ..+....++++++.. ..-+..-++..+++.-.+..-...|+.
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~-~~~~~tLv~~~~mn~irR~eGlkaaR~ 387 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKI-EDIDLTLVYCQYMNFIRRAEGLKAARK 387 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhh-hccCCceehhHHHHHHHHhhhHHHHHH
Confidence 4556666665554322223333333332211111 244555666666552 222335677888888889999999999
Q ss_pred HHHHHHhcCCCC-ChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCchhhHHHHHHHHHhCC
Q 002549 661 LVGCLRQRCAPV-DRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQALIVDGRLNELYVVIQELQDMD 739 (909)
Q Consensus 661 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 739 (909)
+|.++.+.+..+ ++.+.++++.-|| .++.+.|.++|+--+++... +..-....+..+...++-..+..+|++....+
T Consensus 388 iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~d-~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~ 465 (656)
T KOG1914|consen 388 IFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFGD-SPEYVLKYLDFLSHLNDDNNARALFERVLTSV 465 (656)
T ss_pred HHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHhCcchhHHHHHHHHHhcc
Confidence 999998776555 7888888887665 68899999999999887544 44444556677788899999999999999886
Q ss_pred CCcc--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHhccCchH
Q 002549 740 FKIS--KSSILLMLDAFARSGNIFEVKKIYHGMKAA---GYFPTMYLYRVMSGLFCKGKRVR 796 (909)
Q Consensus 740 ~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~ 796 (909)
..++ ...|...++.-..-|++..+.++-++.... ...|....-..+++.|.-.+.+.
T Consensus 466 l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~ 527 (656)
T KOG1914|consen 466 LSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYP 527 (656)
T ss_pred CChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhccccc
Confidence 6555 467888888888899999998888887652 12222233344555555555444
No 118
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.72 E-value=1.8e-06 Score=90.94 Aligned_cols=218 Identities=10% Similarity=0.089 Sum_probs=118.0
Q ss_pred CchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHH
Q 002549 638 DLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQ 717 (909)
Q Consensus 638 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 717 (909)
-......++..+.+.|-..+|..+++ ....|...+.+|...|+.++|..+..+-++ .+|+...|..++.
T Consensus 397 ~Wq~q~~laell~slGitksAl~I~E---------rlemw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 397 IWQLQRLLAELLLSLGITKSALVIFE---------RLEMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGD 465 (777)
T ss_pred cchHHHHHHHHHHHcchHHHHHHHHH---------hHHHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhh
Confidence 34444555566666666666666655 245556666666666666666666665555 2345555555555
Q ss_pred HHHhcCchhhHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccCchHH
Q 002549 718 ALIVDGRLNELYVVIQELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYHGMKAAGYFPTMYLYRVMSGLFCKGKRVRD 797 (909)
Q Consensus 718 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 797 (909)
......-+++|.++.+..... .-..+..-....++++++.+.|+.-.+.. +--..+|-.+..+..+++++..
T Consensus 466 v~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~ 537 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQA 537 (777)
T ss_pred hccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHH
Confidence 555555555555555543221 11111112223456666666666555421 1134455555555556666666
Q ss_pred HHHHHHHHHHCCCCCCH-HhHHHHHHHhhccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHH
Q 002549 798 VEAMVSEMKEAGFKPDL-SIWNSMLKLYTGIEDFKKTIQVYQEIQEADLQPDEDSFNTLIIMYCRDCRPEEGLSLMHEMR 876 (909)
Q Consensus 798 A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 876 (909)
|.+.|..-.. ..||. ..||++-.+|.+.|+..+|...++++++.+ .-+...|-+...+..+.|.+++|.+.+.++.
T Consensus 538 av~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll 614 (777)
T KOG1128|consen 538 AVKAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLL 614 (777)
T ss_pred HHHHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHH
Confidence 6666666555 34554 456666666666666666666666666633 1122444555555566666666666666665
Q ss_pred H
Q 002549 877 K 877 (909)
Q Consensus 877 ~ 877 (909)
.
T Consensus 615 ~ 615 (777)
T KOG1128|consen 615 D 615 (777)
T ss_pred H
Confidence 4
No 119
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.68 E-value=3.6e-06 Score=83.00 Aligned_cols=66 Identities=14% Similarity=0.106 Sum_probs=43.2
Q ss_pred hHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChH---hHHHHHHHHHHc--------CCHHHHHHHHHHHHHcCCC
Q 002549 640 SIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRK---VWNALIKAYAAS--------GCYERARAVFNTMMRDGPS 706 (909)
Q Consensus 640 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~--------g~~~~A~~~~~~~~~~~~~ 706 (909)
.++..++.++...|++++|...++++++. .|.++. .+..++.++... |++++|.+.|+++++..|.
T Consensus 71 ~a~~~la~~~~~~~~~~~A~~~~~~~l~~-~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 147 (235)
T TIGR03302 71 QAQLDLAYAYYKSGDYAEAIAAADRFIRL-HPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN 147 (235)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH-CcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC
Confidence 34566677777777777777777777665 333332 455555666544 6778888888888876555
No 120
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.67 E-value=2.9e-06 Score=95.17 Aligned_cols=234 Identities=9% Similarity=0.058 Sum_probs=152.6
Q ss_pred cCCCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCccc
Q 002549 632 KGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDS 711 (909)
Q Consensus 632 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 711 (909)
.+.+|+...++..|+..+...+++++|..+++..++. .|.....|..++..+.+.++++++..+ .+...-+ ...-
T Consensus 24 ~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~-~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~--~~~~ 98 (906)
T PRK14720 24 NNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKE-HKKSISALYISGILSLSRRPLNDSNLL--NLIDSFS--QNLK 98 (906)
T ss_pred ccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcc--cccc
Confidence 4467778888888888888888888888888877765 555666666666677777777777666 4433221 1112
Q ss_pred HHHHHHHHHhcCchhhHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhc
Q 002549 712 INGLLQALIVDGRLNELYVVIQELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYHGMKAAGYFPTMYLYRVMSGLFCK 791 (909)
Q Consensus 712 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 791 (909)
|..+-..|.. +.+. ..+...+..++.+|.+.|+.++|..+|+++++.. +-|+.+.|.++..|..
T Consensus 99 ~~~ve~~~~~-------------i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae 162 (906)
T PRK14720 99 WAIVEHICDK-------------ILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEE 162 (906)
T ss_pred hhHHHHHHHH-------------HHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHH
Confidence 2222222222 2221 2233456667788888888888888888888755 3467788888888887
Q ss_pred cCchHHHHHHHHHHHHCCCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHcCCCCChhhH-------------------
Q 002549 792 GKRVRDVEAMVSEMKEAGFKPDLSIWNSMLKLYTGIEDFKKTIQVYQEIQEADLQPDEDSF------------------- 852 (909)
Q Consensus 792 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~------------------- 852 (909)
. ++++|++++.++... +...+++.++.++|+++++ ..|+...+
T Consensus 163 ~-dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~--~~~~d~d~f~~i~~ki~~~~~~~~~~~ 224 (906)
T PRK14720 163 E-DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVH--YNSDDFDFFLRIERKVLGHREFTRLVG 224 (906)
T ss_pred h-hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHh--cCcccchHHHHHHHHHHhhhccchhHH
Confidence 7 888888888887652 4445577777777777777 66653221
Q ss_pred --HHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHh----ccCCHHHHHH
Q 002549 853 --NTLIIMYCRDCRPEEGLSLMHEMRKLGLEPKLDTYKSLISAFG----KQQQLEQAEE 905 (909)
Q Consensus 853 --~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~----~~g~~~~A~~ 905 (909)
.-+-..|-..++|+++.++++...+.. ..|......+++.|. ..-+++++++
T Consensus 225 ~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~~kY~~~~~~ee~l~ 282 (906)
T PRK14720 225 LLEDLYEPYKALEDWDEVIYILKKILEHD-NKNNKAREELIRFYKEKYKDHSLLEDYLK 282 (906)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHHHHHccCcchHHHHHH
Confidence 122256667788999999999999642 224555555555543 3344555444
No 121
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.66 E-value=1.5e-06 Score=81.54 Aligned_cols=129 Identities=6% Similarity=0.065 Sum_probs=102.6
Q ss_pred cCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccCchHHHHHHHHHHHHCCCCCCH-HhHHHHHHHh-hccCC--HHH
Q 002549 757 SGNIFEVKKIYHGMKAAGYFPTMYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDL-SIWNSMLKLY-TGIED--FKK 832 (909)
Q Consensus 757 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~-~~~g~--~~~ 832 (909)
.++.+++...++..++.. +.+...|..++..|...|++++|+..++++.+ ..|+. ..+..+..++ ...|+ .++
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~--l~P~~~~~~~~lA~aL~~~~g~~~~~~ 128 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQ--LRGENAELYAALATVLYYQAGQHMTPQ 128 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCCCcHH
Confidence 556677777788777643 34788999999999999999999999999998 55654 6777777764 66676 599
Q ss_pred HHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHH
Q 002549 833 TIQVYQEIQEADLQPD-EDSFNTLIIMYCRDCRPEEGLSLMHEMRKLGLEPKLDTYKSLIS 892 (909)
Q Consensus 833 A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 892 (909)
|.++++++++ ..|+ ..++..++..+.+.|++++|+..++++.+. ..|+.. ...++.
T Consensus 129 A~~~l~~al~--~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l-~~~~~~-r~~~i~ 185 (198)
T PRK10370 129 TREMIDKALA--LDANEVTALMLLASDAFMQADYAQAIELWQKVLDL-NSPRVN-RTQLVE 185 (198)
T ss_pred HHHHHHHHHH--hCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCcc-HHHHHH
Confidence 9999999999 8895 588999999999999999999999999865 244443 334443
No 122
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.64 E-value=4.9e-06 Score=77.08 Aligned_cols=157 Identities=15% Similarity=0.130 Sum_probs=85.6
Q ss_pred HHHHHHHhhcCChhhHHHHHHHHHHcCCCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHH
Q 002549 607 RSMVVAYCKMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAA 686 (909)
Q Consensus 607 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 686 (909)
..+-..+...|+-+....+...... ..|.+..+...++....+.|++.+|...+.++... .|+|...|+.++-+|.+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq 146 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHH
Confidence 3334444445554444444443322 34445555555666666666666666666666655 45666666666666666
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCchhhHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCCHHHHHHH
Q 002549 687 SGCYERARAVFNTMMRDGPSPTVDSINGLLQALIVDGRLNELYVVIQELQDMDFKISKSSILLMLDAFARSGNIFEVKKI 766 (909)
Q Consensus 687 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 766 (909)
.|+.+.|..-|.++++..+. +...++++.-.+.-.|+.++|..++......+.. +..+-..+.-+....|++++|..+
T Consensus 147 ~Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 147 LGRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred ccChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhh
Confidence 66666666666666665554 4455566665555566666666665555544321 222233344444445555555444
Q ss_pred HH
Q 002549 767 YH 768 (909)
Q Consensus 767 ~~ 768 (909)
-.
T Consensus 225 ~~ 226 (257)
T COG5010 225 AV 226 (257)
T ss_pred cc
Confidence 43
No 123
>PF12854 PPR_1: PPR repeat
Probab=98.63 E-value=5e-08 Score=60.43 Aligned_cols=32 Identities=31% Similarity=0.804 Sum_probs=16.7
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 002549 181 GLRPDIITYNTIISACSRESNLEEAMKVYGDL 212 (909)
Q Consensus 181 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 212 (909)
|+.||.+|||+||.+||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44555555555555555555555555555544
No 124
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.61 E-value=5.6e-06 Score=92.37 Aligned_cols=134 Identities=11% Similarity=0.061 Sum_probs=70.1
Q ss_pred ccchhhHHHHHHHHHhcccHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCCchHHH
Q 002549 565 SKSKTMYESLIHSCEYNERFAEASQVFSDMRFYNIEPSE-DLYRSMVVAYCKMDFPETAHFIADQAEKKGIPFEDLSIYV 643 (909)
Q Consensus 565 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 643 (909)
|.++..+-.|.....+.|++++|..+++...+ ..|+. .....+...+.+.+++++|...+++++. ..|++...+.
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~ 158 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREIL 158 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHH
Confidence 44455555555555555555555555555544 23432 2334444455555555555555555554 4455555555
Q ss_pred HHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 002549 644 DIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRD 703 (909)
Q Consensus 644 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 703 (909)
.++.++...|++++|..+|++++.. .|.+..++..++.++...|+.++|...|+++++.
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~-~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQ-HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5555555555555555555555542 3334555555555555555555555555555543
No 125
>PF12854 PPR_1: PPR repeat
Probab=98.61 E-value=5.6e-08 Score=60.21 Aligned_cols=33 Identities=39% Similarity=0.813 Sum_probs=26.2
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHH
Q 002549 216 NCQPDLWTYNAMISVYGRCGLFEKAEQLFKELE 248 (909)
Q Consensus 216 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 248 (909)
|+.||.+|||+||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 677888888888888888888888888887773
No 126
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.60 E-value=9.7e-06 Score=81.91 Aligned_cols=159 Identities=14% Similarity=0.066 Sum_probs=100.1
Q ss_pred CCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHH
Q 002549 637 EDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLL 716 (909)
Q Consensus 637 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 716 (909)
......+..+-.+...|++++|+..++.++.. .|.|+..+......+...|+.++|.+.+++++...|. ....+-++.
T Consensus 304 ~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~-~~~l~~~~a 381 (484)
T COG4783 304 GGLAAQYGRALQTYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPN-SPLLQLNLA 381 (484)
T ss_pred cchHHHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-ccHHHHHHH
Confidence 34444555555566667777777777776665 5666666666677777777777777777777775554 344555666
Q ss_pred HHHHhcCchhhHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccCchH
Q 002549 717 QALIVDGRLNELYVVIQELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYHGMKAAGYFPTMYLYRVMSGLFCKGKRVR 796 (909)
Q Consensus 717 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 796 (909)
.+|.+.|++.+|+.+++...... +.++.+|..|..+|...|+..++.....+ .|...|+++
T Consensus 382 ~all~~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE------------------~~~~~G~~~ 442 (484)
T COG4783 382 QALLKGGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAE------------------GYALAGRLE 442 (484)
T ss_pred HHHHhcCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHH------------------HHHhCCCHH
Confidence 77777777777777777665543 45566666677777777766665544433 334567777
Q ss_pred HHHHHHHHHHHCCCCCCHHhH
Q 002549 797 DVEAMVSEMKEAGFKPDLSIW 817 (909)
Q Consensus 797 ~A~~~~~~~~~~~~~p~~~~~ 817 (909)
+|+..+..+.+. .+++..+|
T Consensus 443 ~A~~~l~~A~~~-~~~~~~~~ 462 (484)
T COG4783 443 QAIIFLMRASQQ-VKLGFPDW 462 (484)
T ss_pred HHHHHHHHHHHh-ccCCcHHH
Confidence 777777666653 34455443
No 127
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.60 E-value=1e-06 Score=82.70 Aligned_cols=120 Identities=11% Similarity=0.078 Sum_probs=86.9
Q ss_pred cCChhhHHHHHHHHHHcCCCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHH-HHcCC--HHH
Q 002549 616 MDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAY-AASGC--YER 692 (909)
Q Consensus 616 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~ 692 (909)
.++.+++...+...++ ..|++...|..++..|...|++++|...|+++.+. .|.+..++..++.++ ...|+ .++
T Consensus 52 ~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l-~P~~~~~~~~lA~aL~~~~g~~~~~~ 128 (198)
T PRK10370 52 QQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQL-RGENAELYAALATVLYYQAGQHMTPQ 128 (198)
T ss_pred chhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhcCCCCcHH
Confidence 3455666666666666 66777788888888888888888888888887776 455777777777753 56566 478
Q ss_pred HHHHHHHHHHcCCCCCcccHHHHHHHHHhcCchhhHHHHHHHHHhCC
Q 002549 693 ARAVFNTMMRDGPSPTVDSINGLLQALIVDGRLNELYVVIQELQDMD 739 (909)
Q Consensus 693 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 739 (909)
|.++++++++.+|+ +...+..+...+.+.|++++|+..++++.+..
T Consensus 129 A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 129 TREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 88888888887776 66777777777777777777777777776654
No 128
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.59 E-value=1.2e-06 Score=77.50 Aligned_cols=103 Identities=11% Similarity=-0.104 Sum_probs=64.6
Q ss_pred HHHHHHhhcCChhhHHHHHHHHHHcCCCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHc
Q 002549 608 SMVVAYCKMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAAS 687 (909)
Q Consensus 608 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 687 (909)
.....+...|++++|...++.++. +.|++..++..++.++...|++++|...|+++.+. .|.+...+..++.++...
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l-~p~~~~a~~~lg~~l~~~ 105 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML-DASHPEPVYQTGVCLKMM 105 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-CCCCcHHHHHHHHHHHHc
Confidence 344455556666666666666655 56666666666666666666777777766666665 455666666666666667
Q ss_pred CCHHHHHHHHHHHHHcCCCCCcccHHH
Q 002549 688 GCYERARAVFNTMMRDGPSPTVDSING 714 (909)
Q Consensus 688 g~~~~A~~~~~~~~~~~~~~~~~~~~~ 714 (909)
|++++|...|+++++..|. +...|..
T Consensus 106 g~~~eAi~~~~~Al~~~p~-~~~~~~~ 131 (144)
T PRK15359 106 GEPGLAREAFQTAIKMSYA-DASWSEI 131 (144)
T ss_pred CCHHHHHHHHHHHHHhCCC-ChHHHHH
Confidence 7777777777776665444 3333433
No 129
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.59 E-value=1.5e-06 Score=76.93 Aligned_cols=108 Identities=15% Similarity=0.000 Sum_probs=85.5
Q ss_pred HHHHHHHcCCCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 002549 625 IADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDG 704 (909)
Q Consensus 625 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 704 (909)
+++++++ ++|++ +..++..+...|++++|...|+.++.. .|.+...|..++.++...|++++|...|+++++.+
T Consensus 15 ~~~~al~--~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~-~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 15 ILKQLLS--VDPET---VYASGYASWQEGDYSRAVIDFSWLVMA-QPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHH--cCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 4444444 44543 456788888888999999998888876 56678888888888888899999999999988877
Q ss_pred CCCCcccHHHHHHHHHhcCchhhHHHHHHHHHhCC
Q 002549 705 PSPTVDSINGLLQALIVDGRLNELYVVIQELQDMD 739 (909)
Q Consensus 705 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 739 (909)
|. +...+..++.++...|++++|+..|++..+..
T Consensus 89 p~-~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 89 AS-HPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred CC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 76 77788888888888888888888888887654
No 130
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=1.8e-05 Score=77.76 Aligned_cols=187 Identities=10% Similarity=0.053 Sum_probs=110.8
Q ss_pred HHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCch
Q 002549 646 IDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQALIVDGRL 725 (909)
Q Consensus 646 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 725 (909)
+.++...|++++|.+.--.+++. .+.+......-..++.-.++.+.|...|++.++.+|. .......-
T Consensus 176 a~cl~~~~~~~~a~~ea~~ilkl-d~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpd--h~~sk~~~--------- 243 (486)
T KOG0550|consen 176 AECLAFLGDYDEAQSEAIDILKL-DATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPD--HQKSKSAS--------- 243 (486)
T ss_pred hhhhhhcccchhHHHHHHHHHhc-ccchhHHHHhcccccccccchHHHHHHHhhhhccChh--hhhHHhHh---------
Confidence 34556666777777666666654 2333333333334444556777777777777765543 11111110
Q ss_pred hhHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHh---cCCCchHHHHHHHHHHHhccCchHHHHHHH
Q 002549 726 NELYVVIQELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYHGMKA---AGYFPTMYLYRVMSGLFCKGKRVRDVEAMV 802 (909)
Q Consensus 726 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 802 (909)
.-.+.++..... .+-..+.|++.+|.+.|.+.+. ..+.|+...|........+.|+..+|+.-.
T Consensus 244 -~~~k~le~~k~~------------gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc 310 (486)
T KOG0550|consen 244 -MMPKKLEVKKER------------GNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDC 310 (486)
T ss_pred -hhHHHHHHHHhh------------hhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhh
Confidence 001111111111 2455678899999999998886 344566777888888888999999999999
Q ss_pred HHHHHCCCCCCHHhHHHHHHH--hhccCCHHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHH
Q 002549 803 SEMKEAGFKPDLSIWNSMLKL--YTGIEDFKKTIQVYQEIQEADLQPDE-DSFNTLIIMYC 860 (909)
Q Consensus 803 ~~~~~~~~~p~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~ 860 (909)
+.+++ +. +..+...+..+ +...+++++|.+-|+++.+....+.. .++.....++-
T Consensus 311 ~~Al~--iD-~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLk 368 (486)
T KOG0550|consen 311 NEALK--ID-SSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKDCEIRRTLREAQLALK 368 (486)
T ss_pred hhhhh--cC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHH
Confidence 88875 32 22444444444 44458999999999999884333322 44444444444
No 131
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.53 E-value=3.4e-05 Score=78.10 Aligned_cols=139 Identities=13% Similarity=-0.003 Sum_probs=120.7
Q ss_pred HhhcCChhhHHHHHHHHHHcCCCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHH
Q 002549 613 YCKMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYER 692 (909)
Q Consensus 613 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 692 (909)
....|.+++|+..++.+++ ..|+++......++.+.+.++..+|.+.+++++.. .|.....+-.++.+|.+.|++.+
T Consensus 316 ~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l-~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALAL-DPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-CCCccHHHHHHHHHHHhcCChHH
Confidence 4456788888888888877 67899999999999999999999999999999887 56568888889999999999999
Q ss_pred HHHHHHHHHHcCCCCCcccHHHHHHHHHhcCchhhHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 002549 693 ARAVFNTMMRDGPSPTVDSINGLLQALIVDGRLNELYVVIQELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYHGMKA 772 (909)
Q Consensus 693 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 772 (909)
|+.+++......|+ +...|..|.++|...|+..++....-+ .+.-.|++++|...+....+
T Consensus 393 ai~~L~~~~~~~p~-dp~~w~~LAqay~~~g~~~~a~~A~AE------------------~~~~~G~~~~A~~~l~~A~~ 453 (484)
T COG4783 393 AIRILNRYLFNDPE-DPNGWDLLAQAYAELGNRAEALLARAE------------------GYALAGRLEQAIIFLMRASQ 453 (484)
T ss_pred HHHHHHHHhhcCCC-CchHHHHHHHHHHHhCchHHHHHHHHH------------------HHHhCCCHHHHHHHHHHHHH
Confidence 99999999998887 889999999999999998887775544 67778999999999998887
Q ss_pred c
Q 002549 773 A 773 (909)
Q Consensus 773 ~ 773 (909)
.
T Consensus 454 ~ 454 (484)
T COG4783 454 Q 454 (484)
T ss_pred h
Confidence 3
No 132
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.52 E-value=5.5e-05 Score=85.69 Aligned_cols=224 Identities=12% Similarity=0.116 Sum_probs=145.8
Q ss_pred CCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCC-----ChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 002549 634 IPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPV-----DRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPT 708 (909)
Q Consensus 634 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 708 (909)
-.|++...|...+......++.+.|+++.++++.. ..+ -.-+|.++++.-...|.-+...++|+++.+. .. .
T Consensus 1453 ssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy-cd-~ 1529 (1710)
T KOG1070|consen 1453 SSPNSSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY-CD-A 1529 (1710)
T ss_pred cCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh-cc-h
Confidence 45777777777777777777777777777777653 211 2456667777666677777777788877663 22 2
Q ss_pred cccHHHHHHHHHhcCchhhHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCch---HHHHHHH
Q 002549 709 VDSINGLLQALIVDGRLNELYVVIQELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYHGMKAAGYFPT---MYLYRVM 785 (909)
Q Consensus 709 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~---~~~~~~l 785 (909)
...|..|...|.+.+++++|.++++.|.+.- ......|...++.+.+..+-++|..++.+.++. .|. .......
T Consensus 1530 ~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~Iskf 1606 (1710)
T KOG1070|consen 1530 YTVHLKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKF 1606 (1710)
T ss_pred HHHHHHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHH
Confidence 3446667777777777777777777776653 245566666777777777777777777777763 233 3334444
Q ss_pred HHHHhccCchHHHHHHHHHHHHCCCCCC-HHhHHHHHHHhhccCCHHHHHHHHHHHHHcCCCCCh--hhHHHHHHHHHhc
Q 002549 786 SGLFCKGKRVRDVEAMVSEMKEAGFKPD-LSIWNSMLKLYTGIEDFKKTIQVYQEIQEADLQPDE--DSFNTLIIMYCRD 862 (909)
Q Consensus 786 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~ 862 (909)
+..-.++|+.+.+..+|+..+.. .|. ...|+.++..=.++|+.+-++.+|++++..++.|.. ..|.-...---..
T Consensus 1607 AqLEFk~GDaeRGRtlfEgll~a--yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~ 1684 (1710)
T KOG1070|consen 1607 AQLEFKYGDAERGRTLFEGLLSA--YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSH 1684 (1710)
T ss_pred HHHHhhcCCchhhHHHHHHHHhh--CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhc
Confidence 55556777777777777777763 333 356777777777777777788888888777666643 3333333333334
Q ss_pred CCh
Q 002549 863 CRP 865 (909)
Q Consensus 863 g~~ 865 (909)
|+-
T Consensus 1685 Gde 1687 (1710)
T KOG1070|consen 1685 GDE 1687 (1710)
T ss_pred Cch
Confidence 553
No 133
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.51 E-value=4.8e-05 Score=86.09 Aligned_cols=233 Identities=15% Similarity=0.117 Sum_probs=149.3
Q ss_pred HHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCC----CchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHH
Q 002549 605 LYRSMVVAYCKMDFPETAHFIADQAEKKGIPFE----DLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNAL 680 (909)
Q Consensus 605 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 680 (909)
.|...+....+.++.++|+.+.++++.. +++. -..+|..+.+....-|.-+...++|+++.+.+. .-.+|..|
T Consensus 1460 ~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd--~~~V~~~L 1536 (1710)
T KOG1070|consen 1460 LWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCD--AYTVHLKL 1536 (1710)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcc--hHHHHHHH
Confidence 3444555555555555555555555542 2111 144555555555555666667777777776532 23456677
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCchhhHHHHHHHHHhCCCCccH-HHHHHHHHHHHhcCC
Q 002549 681 IKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQALIVDGRLNELYVVIQELQDMDFKISK-SSILLMLDAFARSGN 759 (909)
Q Consensus 681 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~ 759 (909)
...|...+++++|.++++.|+++.- -....|...+..+.++++-+.|..+++++.+.-.+... ..+...++.-.+.||
T Consensus 1537 ~~iy~k~ek~~~A~ell~~m~KKF~-q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GD 1615 (1710)
T KOG1070|consen 1537 LGIYEKSEKNDEADELLRLMLKKFG-QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGD 1615 (1710)
T ss_pred HHHHHHhhcchhHHHHHHHHHHHhc-chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCC
Confidence 7777777777788888877777633 24556777777777777777777777777665433222 334445666778899
Q ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccCchHHHHHHHHHHHHCCCCCCHH--hHHHHHHHhhccCCHHHHHHHH
Q 002549 760 IFEVKKIYHGMKAAGYFPTMYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDLS--IWNSMLKLYTGIEDFKKTIQVY 837 (909)
Q Consensus 760 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~g~~~~A~~~~ 837 (909)
.+.++.+|+..+..- +--...|+.+++.-.++|..+.+..+|+++.+.++.|... .|.--+..=..+|+-..+..+=
T Consensus 1616 aeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~VK 1694 (1710)
T KOG1070|consen 1616 AERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYVK 1694 (1710)
T ss_pred chhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHHHH
Confidence 999999999888742 3356789999999999999999999999999887776542 3333333333445544444444
Q ss_pred HHHHH
Q 002549 838 QEIQE 842 (909)
Q Consensus 838 ~~~~~ 842 (909)
.++.+
T Consensus 1695 arA~E 1699 (1710)
T KOG1070|consen 1695 ARAKE 1699 (1710)
T ss_pred HHHHH
Confidence 44433
No 134
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.50 E-value=0.00022 Score=65.67 Aligned_cols=149 Identities=10% Similarity=0.049 Sum_probs=79.9
Q ss_pred CCCCHHH-HHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhccCCcccchhhH
Q 002549 493 IELDHEK-LLSILSSYNVSGRHLEACELIEFVKQHASESTPPLTQAFIIMLCKAQKLDAALEEYSNAWGFGFFSKSKTMY 571 (909)
Q Consensus 493 ~~~d~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 571 (909)
..++..+ +..++-+....|+.+.|...++.+....|. +..+...-+..+-..|++++|+++|+++.+.+ |.+..++
T Consensus 47 ~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~-S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd--pt~~v~~ 123 (289)
T KOG3060|consen 47 LGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPG-SKRVGKLKAMLLEATGNYKEAIEYYESLLEDD--PTDTVIR 123 (289)
T ss_pred cCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHhhchhhHHHHHHHHhccC--cchhHHH
Confidence 4555554 344555666777777777777777666533 23333333334555667777777777776665 5566666
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCCchHHHHHHH
Q 002549 572 ESLIHSCEYNERFAEASQVFSDMRFYNIEPSEDLYRSMVVAYCKMDFPETAHFIADQAEKKGIPFEDLSIYVDIID 647 (909)
Q Consensus 572 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 647 (909)
-.-+...-.+|+.-+|++-+.+..+. +..|.+.|..+...|...|++++|...+++++- +.|-++..+..++.
T Consensus 124 KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll--~~P~n~l~f~rlae 196 (289)
T KOG3060|consen 124 KRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL--IQPFNPLYFQRLAE 196 (289)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH--cCCCcHHHHHHHHH
Confidence 55555555555555555555554432 233444455555555555555555444444443 33433333333333
No 135
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=1.3e-05 Score=78.83 Aligned_cols=293 Identities=10% Similarity=-0.011 Sum_probs=162.9
Q ss_pred HHHHHHhcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCCchHHHHHHHHhhhcC
Q 002549 574 LIHSCEYNERFAEASQVFSDMRFYNIEPSEDLYRSMVVAYCKMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLK 653 (909)
Q Consensus 574 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 653 (909)
....+....++.+|+..+...++..+ -+..-|..-...+...++++++..-.+..++ +.|............+...+
T Consensus 55 ~gn~~yk~k~Y~nal~~yt~Ai~~~p-d~a~yy~nRAa~~m~~~~~~~a~~dar~~~r--~kd~~~k~~~r~~~c~~a~~ 131 (486)
T KOG0550|consen 55 EGNAFYKQKTYGNALKNYTFAIDMCP-DNASYYSNRAATLMMLGRFEEALGDARQSVR--LKDGFSKGQLREGQCHLALS 131 (486)
T ss_pred hcchHHHHhhHHHHHHHHHHHHHhCc-cchhhhchhHHHHHHHHhHhhcccchhhhee--cCCCccccccchhhhhhhhH
Confidence 33444455555555555555554321 1222333334444444555554444433333 34444444444444444444
Q ss_pred ChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCCcccHHHHH-HHHHhcCchhhHHHH
Q 002549 654 LWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGP-SPTVDSINGLL-QALIVDGRLNELYVV 731 (909)
Q Consensus 654 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~-~~~~~~g~~~~A~~~ 731 (909)
+..+|.+.++.-. . +....|+..+++...... +|...+|..+- .++...|++++|.+.
T Consensus 132 ~~i~A~~~~~~~~---------~-----------~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~e 191 (486)
T KOG0550|consen 132 DLIEAEEKLKSKQ---------A-----------YKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSE 191 (486)
T ss_pred HHHHHHHHhhhhh---------h-----------hHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHH
Confidence 4444444443100 0 011222233333322221 13333343332 445566777777766
Q ss_pred HHHHHhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchH-------------HHHHHHHHHHhccCchHHH
Q 002549 732 IQELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYHGMKAAGYFPTM-------------YLYRVMSGLFCKGKRVRDV 798 (909)
Q Consensus 732 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~-------------~~~~~l~~~~~~~g~~~~A 798 (909)
-....+.+.. +....-.-..++.-.++.+.|..-|++.+..+ |+. ..+..-.+-..+.|++.+|
T Consensus 192 a~~ilkld~~-n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A 268 (486)
T KOG0550|consen 192 AIDILKLDAT-NAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKA 268 (486)
T ss_pred HHHHHhcccc-hhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHH
Confidence 6665554421 11111112233445566777777777766533 321 2233334556789999999
Q ss_pred HHHHHHHHHCCCCCCHH-----hHHHHHHHhhccCCHHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCChhhHHHHH
Q 002549 799 EAMVSEMKEAGFKPDLS-----IWNSMLKLYTGIEDFKKTIQVYQEIQEADLQPDE-DSFNTLIIMYCRDCRPEEGLSLM 872 (909)
Q Consensus 799 ~~~~~~~~~~~~~p~~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~ 872 (909)
.+.+.+.+. +.|++. .|.....+..+.|++.+|+.-.+.+++ ++|.- ..+..-+.++.-.++|++|++.+
T Consensus 269 ~E~Yteal~--idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~--iD~syikall~ra~c~l~le~~e~AV~d~ 344 (486)
T KOG0550|consen 269 YECYTEALN--IDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK--IDSSYIKALLRRANCHLALEKWEEAVEDY 344 (486)
T ss_pred HHHHHHhhc--CCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh--cCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999986 566543 456666677889999999999999999 88864 88889999999999999999999
Q ss_pred HHHHHcCCCCC-hhhHHHHHHHHhc
Q 002549 873 HEMRKLGLEPK-LDTYKSLISAFGK 896 (909)
Q Consensus 873 ~~~~~~~~~p~-~~~~~~l~~~~~~ 896 (909)
++..+....+. ..+++....++-+
T Consensus 345 ~~a~q~~~s~e~r~~l~~A~~aLkk 369 (486)
T KOG0550|consen 345 EKAMQLEKDCEIRRTLREAQLALKK 369 (486)
T ss_pred HHHHhhccccchHHHHHHHHHHHHH
Confidence 99987543332 3334333434443
No 136
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.48 E-value=3.9e-05 Score=71.00 Aligned_cols=247 Identities=11% Similarity=0.088 Sum_probs=146.9
Q ss_pred HHHhhcCChhhHHHHHHHHHHcCCCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCH
Q 002549 611 VAYCKMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCY 690 (909)
Q Consensus 611 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 690 (909)
.-+.-.|++..++..-.... ..+........+.++|...|.+.....-.... ..+.......+......-++.
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~---~~~~~~e~d~y~~raylAlg~~~~~~~eI~~~----~~~~lqAvr~~a~~~~~e~~~ 88 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFS---SSKTDVELDVYMYRAYLALGQYQIVISEIKEG----KATPLQAVRLLAEYLELESNK 88 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhc---cccchhHHHHHHHHHHHHcccccccccccccc----cCChHHHHHHHHHHhhCcchh
Confidence 33444577766665543322 33356667777788888888766544333221 122333333333333333444
Q ss_pred HHHHH-HHHHHHHcCCCCCcccHHHHHHHHHhcCchhhHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 002549 691 ERARA-VFNTMMRDGPSPTVDSINGLLQALIVDGRLNELYVVIQELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYHG 769 (909)
Q Consensus 691 ~~A~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 769 (909)
+.-+. +.+.+.......+......-+..|...|++++|...+.... ..+ ....=...+.+..+.+-|.+.+++
T Consensus 89 ~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~----~lE--~~Al~VqI~lk~~r~d~A~~~lk~ 162 (299)
T KOG3081|consen 89 KSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE----NLE--AAALNVQILLKMHRFDLAEKELKK 162 (299)
T ss_pred HHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc----hHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44333 33333332222122222223355778888888888877621 111 122223455677788888888888
Q ss_pred HHhcCCCchHHHHHHHHHH----HhccCchHHHHHHHHHHHHCCCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHcCC
Q 002549 770 MKAAGYFPTMYLYRVMSGL----FCKGKRVRDVEAMVSEMKEAGFKPDLSIWNSMLKLYTGIEDFKKTIQVYQEIQEADL 845 (909)
Q Consensus 770 ~~~~~~~p~~~~~~~l~~~----~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 845 (909)
|.+. .+..+.+.|+.+ ....++..+|.=+|+++-++ ++|...+.+....++...|++++|..+++.++. -
T Consensus 163 mq~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~--k 236 (299)
T KOG3081|consen 163 MQQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALD--K 236 (299)
T ss_pred HHcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHh--c
Confidence 8873 233444444443 34556788888888888764 678888888888888888888888888888887 3
Q ss_pred CC-ChhhHHHHHHHHHhcCChhhH-HHHHHHHH
Q 002549 846 QP-DEDSFNTLIIMYCRDCRPEEG-LSLMHEMR 876 (909)
Q Consensus 846 ~p-~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~ 876 (909)
.| ++.++.+++-+-...|+..++ .+.+.++.
T Consensus 237 d~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk 269 (299)
T KOG3081|consen 237 DAKDPETLANLIVLALHLGKDAEVTERNLSQLK 269 (299)
T ss_pred cCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 44 567777877777777776444 45566665
No 137
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.44 E-value=7.4e-05 Score=68.69 Aligned_cols=173 Identities=13% Similarity=0.063 Sum_probs=99.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhhccCCcccchhhHHHHHHHHHhcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 002549 534 LTQAFIIMLCKAQKLDAALEEYSNAWGFGFFSKSKTMYESLIHSCEYNERFAEASQVFSDMRFYNIEPSEDLYRSMVVAY 613 (909)
Q Consensus 534 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 613 (909)
++..++.+...+|+.+.|...++++...- |.+...--.-...+...|++++|.++++.+++.+ +.|..++..-+...
T Consensus 54 l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAil 130 (289)
T KOG3060|consen 54 LYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAIL 130 (289)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHH
Confidence 44455555666777777777777766553 5555544443444555677777777777776544 33445555555555
Q ss_pred hhcCChhhHHHHHHHHHHcCCCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcC---CH
Q 002549 614 CKMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASG---CY 690 (909)
Q Consensus 614 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~ 690 (909)
-..|+.-+|++-+...++ .-+.+..+|..+...|...|+++.|.-.+++++=. .|.++..+..+...+...| ++
T Consensus 131 ka~GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~-~P~n~l~f~rlae~~Yt~gg~eN~ 207 (289)
T KOG3060|consen 131 KAQGKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI-QPFNPLYFQRLAEVLYTQGGAENL 207 (289)
T ss_pred HHcCCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc-CCCcHHHHHHHHHHHHHHhhHHHH
Confidence 555665566665555555 34556666666666666666666666666665543 3445555555555443332 45
Q ss_pred HHHHHHHHHHHHcCCCCCcccHH
Q 002549 691 ERARAVFNTMMRDGPSPTVDSIN 713 (909)
Q Consensus 691 ~~A~~~~~~~~~~~~~~~~~~~~ 713 (909)
..|.++|.+.++..++ +...+.
T Consensus 208 ~~arkyy~~alkl~~~-~~ral~ 229 (289)
T KOG3060|consen 208 ELARKYYERALKLNPK-NLRALF 229 (289)
T ss_pred HHHHHHHHHHHHhChH-hHHHHH
Confidence 5566666666665442 433333
No 138
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.41 E-value=6.3e-06 Score=72.96 Aligned_cols=104 Identities=13% Similarity=0.122 Sum_probs=70.5
Q ss_pred CCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHH
Q 002549 634 IPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSIN 713 (909)
Q Consensus 634 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 713 (909)
.+|++......++..+...|++++|.+.++.+.+. .|.++..+..++.++...|++++|...++++++.++. +...+.
T Consensus 12 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~ 89 (135)
T TIGR02552 12 LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY-DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD-DPRPYF 89 (135)
T ss_pred CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-ChHHHH
Confidence 55666666666777777777777777777776665 3556677777777777777777777777777666554 455566
Q ss_pred HHHHHHHhcCchhhHHHHHHHHHhCC
Q 002549 714 GLLQALIVDGRLNELYVVIQELQDMD 739 (909)
Q Consensus 714 ~l~~~~~~~g~~~~A~~~~~~~~~~~ 739 (909)
.+..++...|++++|...+++..+..
T Consensus 90 ~la~~~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 90 HAAECLLALGEPESALKALDLAIEIC 115 (135)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 66666667777777777766666543
No 139
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.40 E-value=0.00037 Score=64.76 Aligned_cols=248 Identities=15% Similarity=0.107 Sum_probs=154.3
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 002549 195 ACSRESNLEEAMKVYGDLEAHNCQPDLWTYNAMISVYGRCGLFEKAEQLFKELESKGFFPDAVTYNSLLYAFAREGNVEK 274 (909)
Q Consensus 195 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~ 274 (909)
-+.-.|+|..++..-...... +.++..-.-+-++|...|.+..... +++... .|.......+.......++.+.
T Consensus 17 n~fY~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~~~---eI~~~~-~~~lqAvr~~a~~~~~e~~~~~ 90 (299)
T KOG3081|consen 17 NYFYLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIVIS---EIKEGK-ATPLQAVRLLAEYLELESNKKS 90 (299)
T ss_pred HHHHhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHccccccccc---cccccc-CChHHHHHHHHHHhhCcchhHH
Confidence 344457777777666555433 1344555556667777777654332 222221 2333333333333333344333
Q ss_pred -HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002549 275 -VKEISENMLKMGFGKDEMTYNTIIHMYGKQGQHDVALQLYRDMKLSGRNPDVVTYTVLIDSLGKANKISEAANVMSEML 353 (909)
Q Consensus 275 -a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 353 (909)
..++.+.+.......+......-...|++.|++++|+...+... +......=+..+.+..+++-|.+.++.|.
T Consensus 91 ~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq 164 (299)
T KOG3081|consen 91 ILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQ 164 (299)
T ss_pred HHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555444554555555667888999999998877622 33333344455677888899999999998
Q ss_pred HCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCC
Q 002549 354 DASVKPTLRTYSALICGYAK----AGNRLEAEKTFYCMRRSGIRPDHLAYSVMLDIFLRFNETNKAMMLYQEMVSNGFTP 429 (909)
Q Consensus 354 ~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 429 (909)
+. -+..|.+.|..++.+ .+.+.+|.-+|++|.+. ..|+..+.+....++...|++++|..+++..+.+. ..
T Consensus 165 ~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~ 239 (299)
T KOG3081|consen 165 QI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AK 239 (299)
T ss_pred cc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CC
Confidence 74 366777777777764 34688888999998874 46888888888889999999999999999988764 33
Q ss_pred CHHHHHHHHHHHhcCCCH-HHHHHHHHHHHH
Q 002549 430 DQALYEIMIGVLGRENKG-EEIRKVVRDMKE 459 (909)
Q Consensus 430 ~~~~~~~ll~~~~~~g~~-~~a~~~~~~~~~ 459 (909)
++.+...++-.-...|.. +...+.+..+..
T Consensus 240 dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 240 DPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred CHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 566665555554445544 334455555554
No 140
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.32 E-value=1.5e-05 Score=68.88 Aligned_cols=100 Identities=7% Similarity=0.042 Sum_probs=84.2
Q ss_pred HHHHHHHhccCchHHHHHHHHHHHHCCCCCCH-HhHHHHHHHhhccCCHHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHH
Q 002549 783 RVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDL-SIWNSMLKLYTGIEDFKKTIQVYQEIQEADLQPD-EDSFNTLIIMYC 860 (909)
Q Consensus 783 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~ 860 (909)
=.+...+...|++++|+++|+-+.. +.|.. .-|..|+.+|...|++++|+..|.++.. +.|| +.++.+++.++.
T Consensus 39 Y~~A~~ly~~G~l~~A~~~f~~L~~--~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~--L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 39 YRYAMQLMEVKEFAGAARLFQLLTI--YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQ--IKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCCchHHHHHHHHHH
Confidence 3455667789999999999999987 55655 6688899999999999999999999999 8895 589999999999
Q ss_pred hcCChhhHHHHHHHHHH-cCCCCChhh
Q 002549 861 RDCRPEEGLSLMHEMRK-LGLEPKLDT 886 (909)
Q Consensus 861 ~~g~~~~A~~~~~~~~~-~~~~p~~~~ 886 (909)
..|+.++|.+.|+..+. .+..|....
T Consensus 115 ~lG~~~~A~~aF~~Ai~~~~~~~~~~~ 141 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRICGEVSEHQI 141 (157)
T ss_pred HcCCHHHHHHHHHHHHHHhccChhHHH
Confidence 99999999999999987 344444333
No 141
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=98.25 E-value=1.1e-05 Score=78.75 Aligned_cols=114 Identities=18% Similarity=0.077 Sum_probs=63.2
Q ss_pred HHHHhhcCChhhHHHHHHHHHHcCCCCC--CchHHHHHHHHhhhcCChHHHHHHHHHH--Hhc--CCC-CChHhHHHHHH
Q 002549 610 VVAYCKMDFPETAHFIADQAEKKGIPFE--DLSIYVDIIDAYGRLKLWQKAESLVGCL--RQR--CAP-VDRKVWNALIK 682 (909)
Q Consensus 610 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~--~~~-~~~~~~~~l~~ 682 (909)
..-+|+.|+.+..+.+|+.+++.|-.-- -..+|..|+++|.-.++|++|+++...= +.+ |.. -.......|++
T Consensus 24 GERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 4467888888888888888887553211 1445667777777778888887765431 111 111 12333444555
Q ss_pred HHHHcCCHHHHHHHHHH----HHHcCCC-CCcccHHHHHHHHHhcC
Q 002549 683 AYAASGCYERARAVFNT----MMRDGPS-PTVDSINGLLQALIVDG 723 (909)
Q Consensus 683 ~~~~~g~~~~A~~~~~~----~~~~~~~-~~~~~~~~l~~~~~~~g 723 (909)
.+--.|.+++|+-.-.+ +.+.|-. .....+..+...|...|
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakG 149 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKG 149 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcc
Confidence 55566777776544333 2222211 12344555666665544
No 142
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.23 E-value=3.2e-05 Score=66.80 Aligned_cols=102 Identities=9% Similarity=-0.010 Sum_probs=81.7
Q ss_pred CC-CCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccH
Q 002549 634 IP-FEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSI 712 (909)
Q Consensus 634 ~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 712 (909)
+. ++.......++..+...|++++|..+|+-+... .|.+...|..|+.++...|++++|+..|.++...+++ +..++
T Consensus 29 ~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~-Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~ 106 (157)
T PRK15363 29 DDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIY-DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAP 106 (157)
T ss_pred CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHH
Confidence 55 566677777888888888888888888888776 5667778888888888888999999999988888776 77788
Q ss_pred HHHHHHHHhcCchhhHHHHHHHHHh
Q 002549 713 NGLLQALIVDGRLNELYVVIQELQD 737 (909)
Q Consensus 713 ~~l~~~~~~~g~~~~A~~~~~~~~~ 737 (909)
..+..++...|+.+.|.+.|+..+.
T Consensus 107 ~~ag~c~L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 107 WAAAECYLACDNVCYAIKALKAVVR 131 (157)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8888888888888888777776553
No 143
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.23 E-value=3.5e-05 Score=68.17 Aligned_cols=110 Identities=13% Similarity=0.012 Sum_probs=79.7
Q ss_pred HHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCchhhHHHHHHHHHhCCC
Q 002549 661 LVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQALIVDGRLNELYVVIQELQDMDF 740 (909)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 740 (909)
.+++++.. .|.+......++..+...|++++|.+.|+.+...++. +...|..+..++...|++++|...+++..+.+
T Consensus 5 ~~~~~l~~-~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~- 81 (135)
T TIGR02552 5 TLKDLLGL-DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPY-NSRYWLGLAACCQMLKEYEEAIDAYALAAALD- 81 (135)
T ss_pred hHHHHHcC-ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-
Confidence 45555554 3445566777888888889999999999998887765 66777788888888888888888888777665
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 002549 741 KISKSSILLMLDAFARSGNIFEVKKIYHGMKAA 773 (909)
Q Consensus 741 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 773 (909)
+.+...+..+...+...|++++|...|+...+.
T Consensus 82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 82 PDDPRPYFHAAECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 334455555666777777777777777777663
No 144
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.21 E-value=0.00017 Score=62.74 Aligned_cols=132 Identities=8% Similarity=0.052 Sum_probs=87.3
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccCchHHHHHHHHHHHHCCCCCCH---HhHH
Q 002549 742 ISKSSILLMLDAFARSGNIFEVKKIYHGMKAAGYFPTMYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDL---SIWN 818 (909)
Q Consensus 742 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~ 818 (909)
|....-..|..+....|+..+|...|++....-+.-+....-.+..+....+++..|...++++.+. +|+. .+-.
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~--~pa~r~pd~~L 164 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEY--NPAFRSPDGHL 164 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhc--CCccCCCCchH
Confidence 3333344466777777777777777777776545556666667777777777777777777777663 2332 2344
Q ss_pred HHHHHhhccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHH
Q 002549 819 SMLKLYTGIEDFKKTIQVYQEIQEADLQPDEDSFNTLIIMYCRDCRPEEGLSLMHEMRK 877 (909)
Q Consensus 819 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 877 (909)
.+..+|...|++.+|...|+.++. ..|++..-...+..+.++|+.++|..-+....+
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~--~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAIS--YYPGPQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHH--hCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 556667777777777777777777 677777777777777777777766665555543
No 145
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.18 E-value=4e-05 Score=68.36 Aligned_cols=112 Identities=13% Similarity=0.091 Sum_probs=77.3
Q ss_pred ccCchHHHHHHHHHHHHCCCCCCH----HhHHHHHHHhhccCCHHHHHHHHHHHHHcCCCCCh----hhHHHHHHHHHhc
Q 002549 791 KGKRVRDVEAMVSEMKEAGFKPDL----SIWNSMLKLYTGIEDFKKTIQVYQEIQEADLQPDE----DSFNTLIIMYCRD 862 (909)
Q Consensus 791 ~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~ 862 (909)
..++...+...++.+.+. .|+. .....+...+...|++++|...|+++++.. ||+ .....++.++...
T Consensus 23 ~~~~~~~~~~~~~~l~~~--~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~--~d~~l~~~a~l~LA~~~~~~ 98 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKD--YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA--PDPELKPLARLRLARILLQQ 98 (145)
T ss_pred HCCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCHHHHHHHHHHHHHHHHHc
Confidence 366777777777777763 3333 233445567777888888888888888743 443 3455678888888
Q ss_pred CChhhHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHhhc
Q 002549 863 CRPEEGLSLMHEMRKLGLEPKLDTYKSLISAFGKQQQLEQAEELLK 908 (909)
Q Consensus 863 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 908 (909)
|++++|+..++..... ...+..+...+++|.+.|++++|+..|+
T Consensus 99 ~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~ 142 (145)
T PF09976_consen 99 GQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQ 142 (145)
T ss_pred CCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 8888888888664322 2234466677888888888888888775
No 146
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=98.17 E-value=0.011 Score=59.67 Aligned_cols=206 Identities=13% Similarity=0.118 Sum_probs=128.6
Q ss_pred hHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcc-----cHHHHHHHHH----hcCchhhHHHHHHHHHhCCCCccH
Q 002549 674 RKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVD-----SINGLLQALI----VDGRLNELYVVIQELQDMDFKISK 744 (909)
Q Consensus 674 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-----~~~~l~~~~~----~~g~~~~A~~~~~~~~~~~~~~~~ 744 (909)
...+..++....+.++...|...+.-....+|..++. +-..+-...+ ...+..+-+.++......++.--.
T Consensus 298 i~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQ 377 (549)
T PF07079_consen 298 IDRFGNLLSFKVKQVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQ 377 (549)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHH
Confidence 3456667777888899999999998887766553311 1112222222 233445556677776665543221
Q ss_pred HHHHH---HHHHHHhcCC-HHHHHHHHHHHHhcCCCchHHHHHHHHHHHhc--------cCchHHHHHHHHHHHHCCCCC
Q 002549 745 SSILL---MLDAFARSGN-IFEVKKIYHGMKAAGYFPTMYLYRVMSGLFCK--------GKRVRDVEAMVSEMKEAGFKP 812 (909)
Q Consensus 745 ~~~~~---l~~~~~~~g~-~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~--------~g~~~~A~~~~~~~~~~~~~p 812 (909)
.... -+.-+.+.|. -++|+.+++.+++ ++|......+.+..+.| ...+..-+.+-+-+.+.|++|
T Consensus 378 -Lvh~L~~~Ak~lW~~g~~dekalnLLk~il~--ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~ 454 (549)
T PF07079_consen 378 -LVHYLVFGAKHLWEIGQCDEKALNLLKLILQ--FTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTP 454 (549)
T ss_pred -HHHHHHHHHHHHHhcCCccHHHHHHHHHHHH--hccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCc
Confidence 1111 2233555565 7889999999887 23322222222222221 122333333333444567776
Q ss_pred CH----HhHHHHHHH--hhccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhh
Q 002549 813 DL----SIWNSMLKL--YTGIEDFKKTIQVYQEIQEADLQPDEDSFNTLIIMYCRDCRPEEGLSLMHEMRKLGLEPKLDT 886 (909)
Q Consensus 813 ~~----~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 886 (909)
-. ..-|-|..| +..+|++.++.-+..-+.+ +.|++.+|..+|-++....+|+||.+++..+ +|+..+
T Consensus 455 i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L-----P~n~~~ 527 (549)
T PF07079_consen 455 ITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL-----PPNERM 527 (549)
T ss_pred ccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC-----CCchhh
Confidence 33 345555554 5678999999999999999 9999999999999999999999999999884 667666
Q ss_pred HHH
Q 002549 887 YKS 889 (909)
Q Consensus 887 ~~~ 889 (909)
++.
T Consensus 528 ~ds 530 (549)
T PF07079_consen 528 RDS 530 (549)
T ss_pred HHH
Confidence 553
No 147
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.12 E-value=6.4e-05 Score=77.43 Aligned_cols=124 Identities=11% Similarity=0.179 Sum_probs=95.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccCchHHHHHHHHHHHHCCCCCCHHhHHHHHHHhh
Q 002549 746 SILLMLDAFARSGNIFEVKKIYHGMKAAGYFPTMYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDLSIWNSMLKLYT 825 (909)
Q Consensus 746 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 825 (909)
....++..+...++++.|..+++++.+.. |+ +...++..+...++-.+|.+++.+.++. .+-|...+......|.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHH
Confidence 34446666777788888888888888754 44 3344677777778888899998888863 2335456666667788
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCChhhHHHHHHHHH
Q 002549 826 GIEDFKKTIQVYQEIQEADLQPDE-DSFNTLIIMYCRDCRPEEGLSLMHEMR 876 (909)
Q Consensus 826 ~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~ 876 (909)
..++++.|+++.+++.+ +.|+. .+|..|+.+|...|++++|+-.++.+-
T Consensus 246 ~k~~~~lAL~iAk~av~--lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVE--LSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred hcCCHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 88999999999999999 88965 789999999999999999998887664
No 148
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.10 E-value=2.9e-05 Score=73.58 Aligned_cols=97 Identities=15% Similarity=0.274 Sum_probs=59.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCc-hHHHHHHHHHHHhccCchHHHHHHHHHHHHCCCCCCH-HhHHHHHHHhhccC
Q 002549 751 LDAFARSGNIFEVKKIYHGMKAAGYFP-TMYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDL-SIWNSMLKLYTGIE 828 (909)
Q Consensus 751 ~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g 828 (909)
.+-..+.+++++|+..|.+.++. .| |...|..-..+|.+.|.++.|++-.+..+. +.|.. .+|..|+.+|...|
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l--~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~g 163 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIEL--DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALG 163 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhc--CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccC
Confidence 44455666666666666666653 34 444555556666666666666666666665 44544 45666666666666
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHH
Q 002549 829 DFKKTIQVYQEIQEADLQPDEDSFN 853 (909)
Q Consensus 829 ~~~~A~~~~~~~~~~~~~p~~~~~~ 853 (909)
++++|++.|+++++ +.|+..+|.
T Consensus 164 k~~~A~~aykKaLe--ldP~Ne~~K 186 (304)
T KOG0553|consen 164 KYEEAIEAYKKALE--LDPDNESYK 186 (304)
T ss_pred cHHHHHHHHHhhhc--cCCCcHHHH
Confidence 66666666666666 666655443
No 149
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.09 E-value=0.00011 Score=75.62 Aligned_cols=121 Identities=17% Similarity=0.289 Sum_probs=101.0
Q ss_pred HHHHHHHHHHhccCchHHHHHHHHHHHHCCCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHcCCCC-ChhhHHHHHHH
Q 002549 780 YLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDLSIWNSMLKLYTGIEDFKKTIQVYQEIQEADLQP-DEDSFNTLIIM 858 (909)
Q Consensus 780 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~ 858 (909)
.....|+..+...++++.|+++++++.+. .|+.. ..++..+...++-.+|++++++.++ ..| +...+..-+..
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~--~pev~--~~LA~v~l~~~~E~~AI~ll~~aL~--~~p~d~~LL~~Qa~f 243 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRER--DPEVA--VLLARVYLLMNEEVEAIRLLNEALK--ENPQDSELLNLQAEF 243 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhc--CCcHH--HHHHHHHHhcCcHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 44456666777889999999999999874 46643 4467777778899999999999998 688 44667778889
Q ss_pred HHhcCChhhHHHHHHHHHHcCCCCC-hhhHHHHHHHHhccCCHHHHHHhhc
Q 002549 859 YCRDCRPEEGLSLMHEMRKLGLEPK-LDTYKSLISAFGKQQQLEQAEELLK 908 (909)
Q Consensus 859 ~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~ 908 (909)
|.+.|+++.|+++.+++. ...|+ ..+|..|+.+|.+.|++++|+-.++
T Consensus 244 Ll~k~~~~lAL~iAk~av--~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLN 292 (395)
T PF09295_consen 244 LLSKKKYELALEIAKKAV--ELSPSEFETWYQLAECYIQLGDFENALLALN 292 (395)
T ss_pred HHhcCCHHHHHHHHHHHH--HhCchhHHHHHHHHHHHHhcCCHHHHHHHHh
Confidence 999999999999999999 45665 7799999999999999999998775
No 150
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.09 E-value=9.9e-05 Score=65.80 Aligned_cols=116 Identities=8% Similarity=0.027 Sum_probs=83.9
Q ss_pred hcCCHHHHHHHHHHHHhcCCC--chHHHHHHHHHHHhccCchHHHHHHHHHHHHCCCCCCH----HhHHHHHHHhhccCC
Q 002549 756 RSGNIFEVKKIYHGMKAAGYF--PTMYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDL----SIWNSMLKLYTGIED 829 (909)
Q Consensus 756 ~~g~~~~a~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~ 829 (909)
..++...+...++.+.+.... ......-.+...+...|++++|...|+.+.+.. ||. .....+...+...|+
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~--~d~~l~~~a~l~LA~~~~~~~~ 100 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA--PDPELKPLARLRLARILLQQGQ 100 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCHHHHHHHHHHHHHHHHHcCC
Confidence 377888888888888764211 123444556677888899999999999988754 443 244556777888899
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHH
Q 002549 830 FKKTIQVYQEIQEADLQPDEDSFNTLIIMYCRDCRPEEGLSLMHEM 875 (909)
Q Consensus 830 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 875 (909)
+++|+..++.... -...+..+..++++|.+.|++++|...|++.
T Consensus 101 ~d~Al~~L~~~~~--~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 101 YDEALATLQQIPD--EAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHHHhccC--cchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 9999999876433 1224466778889999999999999998875
No 151
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.07 E-value=0.015 Score=57.45 Aligned_cols=272 Identities=14% Similarity=0.092 Sum_probs=148.1
Q ss_pred CCCCHHHHHHHHHH--HhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhccCCcccchhh
Q 002549 493 IELDHEKLLSILSS--YNVSGRHLEACELIEFVKQHASESTPPLTQAFIIMLCKAQKLDAALEEYSNAWGFGFFSKSKTM 570 (909)
Q Consensus 493 ~~~d~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 570 (909)
+..|...+..++.+ ..-.|+++.|.+-|+.|.... ..-..-...|..--.+.|..+.|+++-++..... |.-...
T Consensus 114 lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dP-EtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A--p~l~WA 190 (531)
T COG3898 114 LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDP-ETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA--PQLPWA 190 (531)
T ss_pred hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcCh-HHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc--cCCchH
Confidence 44555555555543 345788888888888887631 1111111122222346788888888888887665 777888
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhCC-CCCCHHHH--HHHHHH--Hhh-cCChhhHHHHHHHHHHcCCCCCCchHHHH
Q 002549 571 YESLIHSCEYNERFAEASQVFSDMRFYN-IEPSEDLY--RSMVVA--YCK-MDFPETAHFIADQAEKKGIPFEDLSIYVD 644 (909)
Q Consensus 571 ~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~--~~l~~~--~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 644 (909)
+...+...+..|+|+.|+++.+.-+... +.++..-- ..++.+ ... ..++..|...-.++.+ +.|+-...-..
T Consensus 191 ~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~ 268 (531)
T COG3898 191 ARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVV 268 (531)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHH
Confidence 9999999999999999999998765432 23332211 111111 000 1123333333333333 34433333333
Q ss_pred HHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCc
Q 002549 645 IIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQALIVDGR 724 (909)
Q Consensus 645 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 724 (909)
. ..++.+.|+..++-.+++.+-+..|.|++ ...|....-
T Consensus 269 A-----------------------------------Aralf~d~~~rKg~~ilE~aWK~ePHP~i------a~lY~~ar~ 307 (531)
T COG3898 269 A-----------------------------------ARALFRDGNLRKGSKILETAWKAEPHPDI------ALLYVRARS 307 (531)
T ss_pred H-----------------------------------HHHHHhccchhhhhhHHHHHHhcCCChHH------HHHHHHhcC
Confidence 3 34455555566666666665555444432 122222222
Q ss_pred hhhHHHHHHHHHhC-CCCcc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHh-ccCchHHHHHH
Q 002549 725 LNELYVVIQELQDM-DFKIS-KSSILLMLDAFARSGNIFEVKKIYHGMKAAGYFPTMYLYRVMSGLFC-KGKRVRDVEAM 801 (909)
Q Consensus 725 ~~~A~~~~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~A~~~ 801 (909)
-+.++.-+++.... .++|+ ......+..+-...|++..|..--+.... ..|....|..|.+.-. ..|+-.++.++
T Consensus 308 gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~w 385 (531)
T COG3898 308 GDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQW 385 (531)
T ss_pred CCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHH
Confidence 23333333333221 22333 34444556666667777777666666554 3466667766666654 34777777777
Q ss_pred HHHHHHCCCCC
Q 002549 802 VSEMKEAGFKP 812 (909)
Q Consensus 802 ~~~~~~~~~~p 812 (909)
+.+..+.+-.|
T Consensus 386 lAqav~APrdP 396 (531)
T COG3898 386 LAQAVKAPRDP 396 (531)
T ss_pred HHHHhcCCCCC
Confidence 77777644333
No 152
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.06 E-value=7e-05 Score=71.07 Aligned_cols=94 Identities=20% Similarity=0.149 Sum_probs=82.9
Q ss_pred HHHHhhcCChhhHHHHHHHHHHcCCCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCC
Q 002549 610 VVAYCKMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGC 689 (909)
Q Consensus 610 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 689 (909)
..-..+.+++++|+..|.++++ +.|.++..|..-+.+|++.|.++.|++-++.++.. .|.....|..|+.+|...|+
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i-Dp~yskay~RLG~A~~~~gk 164 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI-DPHYSKAYGRLGLAYLALGK 164 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHccCc
Confidence 3456677889999999999998 89999999999999999999999999999999887 56678889999999999999
Q ss_pred HHHHHHHHHHHHHcCCC
Q 002549 690 YERARAVFNTMMRDGPS 706 (909)
Q Consensus 690 ~~~A~~~~~~~~~~~~~ 706 (909)
+++|.+.|+++++.+|.
T Consensus 165 ~~~A~~aykKaLeldP~ 181 (304)
T KOG0553|consen 165 YEEAIEAYKKALELDPD 181 (304)
T ss_pred HHHHHHHHHhhhccCCC
Confidence 99999999999996554
No 153
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.06 E-value=0.016 Score=57.29 Aligned_cols=289 Identities=15% Similarity=0.094 Sum_probs=160.5
Q ss_pred cCCHHHHHHHHHHhhccCCcccchhhHHHHHHHH--HhcccHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHhhcCChh
Q 002549 545 AQKLDAALEEYSNAWGFGFFSKSKTMYESLIHSC--EYNERFAEASQVFSDMRFYNIEPSEDL--YRSMVVAYCKMDFPE 620 (909)
Q Consensus 545 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~~~~p~~~~--~~~l~~~~~~~~~~~ 620 (909)
.|+-..|.+.-.+..+. +..|....-.++.+. .-.|++++|.+-|+.|.. .|.... +..+.-.-.+.|..+
T Consensus 97 AGda~lARkmt~~~~~l--lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~---dPEtRllGLRgLyleAqr~Gare 171 (531)
T COG3898 97 AGDASLARKMTARASKL--LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD---DPETRLLGLRGLYLEAQRLGARE 171 (531)
T ss_pred cCchHHHHHHHHHHHhh--hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc---ChHHHHHhHHHHHHHHHhcccHH
Confidence 55666666665554432 233444444444333 335888888888888874 232221 223333334566666
Q ss_pred hHHHHHHHHHHcCCCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHH
Q 002549 621 TAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTM 700 (909)
Q Consensus 621 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 700 (909)
.|+++-+.+.. .-|.-.-.........+..|+|+.|+++.+...+..
T Consensus 172 aAr~yAe~Aa~--~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~------------------------------- 218 (531)
T COG3898 172 AARHYAERAAE--KAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAK------------------------------- 218 (531)
T ss_pred HHHHHHHHHHh--hccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHH-------------------------------
Confidence 66666665544 344444444445555555555555555554432210
Q ss_pred HHcCCCCCccc--HHHHHHH--HHh-cCchhhHHHHHHHHHhCCCCccHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 002549 701 MRDGPSPTVDS--INGLLQA--LIV-DGRLNELYVVIQELQDMDFKISKS-SILLMLDAFARSGNIFEVKKIYHGMKAAG 774 (909)
Q Consensus 701 ~~~~~~~~~~~--~~~l~~~--~~~-~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 774 (909)
-..++..- -..|+.+ ... ..+...|...-.+..+ ..|+.. .-.....++.+.|++.++..+++.+.+..
T Consensus 219 ---vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~e 293 (531)
T COG3898 219 ---VIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAE 293 (531)
T ss_pred ---hhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcC
Confidence 01111111 0011100 000 1112222222222222 223311 11224467888999999999999998865
Q ss_pred CCchHHHHHHHHHHHhccCchHHHH-HHHHHHHHCCCCCCH-HhHHHHHHHhhccCCHHHHHHHHHHHHHcCCCCChhhH
Q 002549 775 YFPTMYLYRVMSGLFCKGKRVRDVE-AMVSEMKEAGFKPDL-SIWNSMLKLYTGIEDFKKTIQVYQEIQEADLQPDEDSF 852 (909)
Q Consensus 775 ~~p~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 852 (909)
..|+ ++ +...+.+.|+.-... +-..++.. ++||. .+...+..+-...|++..|..-.+.+.. ..|....|
T Consensus 294 PHP~--ia--~lY~~ar~gdta~dRlkRa~~L~s--lk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~ 365 (531)
T COG3898 294 PHPD--IA--LLYVRARSGDTALDRLKRAKKLES--LKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAY 365 (531)
T ss_pred CChH--HH--HHHHHhcCCCcHHHHHHHHHHHHh--cCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHH
Confidence 4444 33 233445666543221 12222333 57776 5666677788888999999999999998 89999999
Q ss_pred HHHHHHHHh-cCChhhHHHHHHHHHHcCCCCCh
Q 002549 853 NTLIIMYCR-DCRPEEGLSLMHEMRKLGLEPKL 884 (909)
Q Consensus 853 ~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~p~~ 884 (909)
..|+++-.- .|+-.++..++-+.++..-.|..
T Consensus 366 lLlAdIeeAetGDqg~vR~wlAqav~APrdPaW 398 (531)
T COG3898 366 LLLADIEEAETGDQGKVRQWLAQAVKAPRDPAW 398 (531)
T ss_pred HHHHHHHhhccCchHHHHHHHHHHhcCCCCCcc
Confidence 999987654 59999999999999876556653
No 154
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.06 E-value=0.017 Score=61.38 Aligned_cols=60 Identities=10% Similarity=0.061 Sum_probs=37.3
Q ss_pred hhccCCHHHHHHHHHHHHHc-CCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCC
Q 002549 824 YTGIEDFKKTIQVYQEIQEA-DLQPDEDSFNTLIIMYCRDCRPEEGLSLMHEMRKLGLEPK 883 (909)
Q Consensus 824 ~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 883 (909)
....|..+.|++..-.+.+. ++-|-...|..++-+-|....+.-..+.|-++.+....|+
T Consensus 1031 ql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSKAfmkLe~~e~l~~ 1091 (1189)
T KOG2041|consen 1031 QLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAFMKLEAFEELDD 1091 (1189)
T ss_pred HHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhhhCCH
Confidence 34457788887766555442 3445456777777766666666666666666666555555
No 155
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.06 E-value=0.0031 Score=63.57 Aligned_cols=61 Identities=15% Similarity=0.192 Sum_probs=33.4
Q ss_pred HHHHHhhhc-CChHHHHHHHHHHHhcCCCC-----ChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 002549 644 DIIDAYGRL-KLWQKAESLVGCLRQRCAPV-----DRKVWNALIKAYAASGCYERARAVFNTMMRDG 704 (909)
Q Consensus 644 ~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 704 (909)
.++..|... |++++|++.|+++.+.-... -..++..++..+...|++++|.++|+++....
T Consensus 119 ~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~ 185 (282)
T PF14938_consen 119 ELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKC 185 (282)
T ss_dssp HHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence 345556666 67777777776665431000 12344455666777777777777777776543
No 156
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.05 E-value=0.00048 Score=60.06 Aligned_cols=148 Identities=13% Similarity=0.042 Sum_probs=78.9
Q ss_pred CHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCchhhHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHH
Q 002549 689 CYERARAVFNTMMRDGPSPTVDSINGLLQALIVDGRLNELYVVIQELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYH 768 (909)
Q Consensus 689 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 768 (909)
|++...+-..+..+ ..|.+..-..|..++.+.|++.||...|++...--.-.|......+.++....++.-.|...++
T Consensus 71 dP~R~~Rea~~~~~--~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe 148 (251)
T COG4700 71 DPERHLREATEELA--IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLE 148 (251)
T ss_pred ChhHHHHHHHHHHh--hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 34444433333333 2344444455566666666666666666666555555555666666666666666666666666
Q ss_pred HHHhcCCC-chHHHHHHHHHHHhccCchHHHHHHHHHHHHCCCCCCHHhHHHHHHHhhccCCHHHHHHHHHHH
Q 002549 769 GMKAAGYF-PTMYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDLSIWNSMLKLYTGIEDFKKTIQVYQEI 840 (909)
Q Consensus 769 ~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 840 (909)
++.+.... -++..--.+...|...|++.+|+..|+.+.. +.|+..........+.++|+.++|..-+..+
T Consensus 149 ~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~--~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 149 DLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAIS--YYPGPQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHH--hCCCHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 66553200 0222233345556666666666666666665 4555544444444555555555554444433
No 157
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.04 E-value=7.4e-06 Score=52.00 Aligned_cols=34 Identities=35% Similarity=0.660 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCh
Q 002549 116 VYNAMMGIYARNGRFQKVQELLDLMRKRGCEPDL 149 (909)
Q Consensus 116 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~ 149 (909)
+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 7999999999999999999999999999999984
No 158
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=98.00 E-value=6.5e-05 Score=73.69 Aligned_cols=132 Identities=9% Similarity=-0.084 Sum_probs=93.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh----cCC-CchHHHHHHHHHHHhccCchHHHHHHHHHHHH----CCC-CCCHH
Q 002549 746 SILLMLDAFARSGNIFEVKKIYHGMKA----AGY-FPTMYLYRVMSGLFCKGKRVRDVEAMVSEMKE----AGF-KPDLS 815 (909)
Q Consensus 746 ~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~-~p~~~ 815 (909)
.|..|.+.|.-.|+++.|+...+.-+. .|- ......+..+.+++.-.|+++.|.+.++.... .|- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 344556666667778877776665433 121 12345677788888888999999988877543 221 22345
Q ss_pred hHHHHHHHhhccCCHHHHHHHHHHHHHc-----CCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHH
Q 002549 816 IWNSMLKLYTGIEDFKKTIQVYQEIQEA-----DLQPDEDSFNTLIIMYCRDCRPEEGLSLMHEMRK 877 (909)
Q Consensus 816 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 877 (909)
+..+|+++|.-..++++|+.++.+=+.. +....-.++.+|+.++...|..++|+.+.+.-.+
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 7888999999999999999998885541 1222457888999999999999999999887765
No 159
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.95 E-value=7.7e-06 Score=64.77 Aligned_cols=77 Identities=14% Similarity=0.235 Sum_probs=32.7
Q ss_pred CchHHHHHHHHHHHHCCCCC---CHHhHHHHHHHhhccCCHHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCChhhH
Q 002549 793 KRVRDVEAMVSEMKEAGFKP---DLSIWNSMLKLYTGIEDFKKTIQVYQEIQEADLQPDE-DSFNTLIIMYCRDCRPEEG 868 (909)
Q Consensus 793 g~~~~A~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A 868 (909)
|++++|+.+++++.+. .| +...+..++.+|.+.|++++|++++++ .+ ..|.+ .....++.+|.+.|++++|
T Consensus 3 ~~y~~Ai~~~~k~~~~--~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~--~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 3 GNYENAIKYYEKLLEL--DPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK--LDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp T-HHHHHHHHHHHHHH--HCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT--HHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred ccHHHHHHHHHHHHHH--CCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC--CCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 4445555555555442 22 222333344444555555555555544 22 23322 3333344455555555555
Q ss_pred HHHHHH
Q 002549 869 LSLMHE 874 (909)
Q Consensus 869 ~~~~~~ 874 (909)
++.+++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 554443
No 160
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.94 E-value=1.5e-05 Score=63.13 Aligned_cols=77 Identities=25% Similarity=0.401 Sum_probs=53.8
Q ss_pred cCCHHHHHHHHHHHHHcCCCC---ChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCC-hhhHHHHHHHHhccCCHHH
Q 002549 827 IEDFKKTIQVYQEIQEADLQP---DEDSFNTLIIMYCRDCRPEEGLSLMHEMRKLGLEPK-LDTYKSLISAFGKQQQLEQ 902 (909)
Q Consensus 827 ~g~~~~A~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~ 902 (909)
+|++++|+.+++++++ ..| +...+..++.+|.+.|++++|.+++++ .+ ..|. ....-.++.++.+.|++++
T Consensus 2 ~~~y~~Ai~~~~k~~~--~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~--~~~~~~~~~~l~a~~~~~l~~y~e 76 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLE--LDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK--LDPSNPDIHYLLARCLLKLGKYEE 76 (84)
T ss_dssp TT-HHHHHHHHHHHHH--HHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT--HHHCHHHHHHHHHHHHHHTT-HHH
T ss_pred CccHHHHHHHHHHHHH--HCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC--CCCCCHHHHHHHHHHHHHhCCHHH
Confidence 4778888888888887 555 335566678888888888888888877 32 2222 3444456777888888888
Q ss_pred HHHhhc
Q 002549 903 AEELLK 908 (909)
Q Consensus 903 A~~~~~ 908 (909)
|++.|+
T Consensus 77 Ai~~l~ 82 (84)
T PF12895_consen 77 AIKALE 82 (84)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 888775
No 161
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.94 E-value=1.3e-05 Score=50.36 Aligned_cols=33 Identities=30% Similarity=0.602 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC
Q 002549 115 QVYNAMMGIYARNGRFQKVQELLDLMRKRGCEP 147 (909)
Q Consensus 115 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~ 147 (909)
.+||.++.+|++.|+++.|.++|++|.+.|+.|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 589999999999999999999999999999887
No 162
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.93 E-value=0.00014 Score=67.01 Aligned_cols=97 Identities=11% Similarity=0.065 Sum_probs=74.4
Q ss_pred hHHHHHHHHHHHhccCchHHHHHHHHHHHHCCCCCC--HHhHHHHHHHhhccCCHHHHHHHHHHHHHcCCCCCh-hhHHH
Q 002549 778 TMYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPD--LSIWNSMLKLYTGIEDFKKTIQVYQEIQEADLQPDE-DSFNT 854 (909)
Q Consensus 778 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~ 854 (909)
....+..++..+...|++++|+..+++++.....|. ..++..++.+|...|++++|+..++++++ +.|+. .++..
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~--~~~~~~~~~~~ 111 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE--RNPFLPQALNN 111 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCcHHHHHH
Confidence 455667777888888999999999999976321221 24788888999999999999999999998 77854 66777
Q ss_pred HHHHHH-------hcCChhhHHHHHHHHH
Q 002549 855 LIIMYC-------RDCRPEEGLSLMHEMR 876 (909)
Q Consensus 855 l~~~~~-------~~g~~~~A~~~~~~~~ 876 (909)
++.++. ..|++++|...+++..
T Consensus 112 la~i~~~~~~~~~~~g~~~~A~~~~~~a~ 140 (168)
T CHL00033 112 MAVICHYRGEQAIEQGDSEIAEAWFDQAA 140 (168)
T ss_pred HHHHHHHhhHHHHHcccHHHHHHHHHHHH
Confidence 777777 8888887766666554
No 163
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.93 E-value=0.0013 Score=66.28 Aligned_cols=196 Identities=12% Similarity=0.216 Sum_probs=110.6
Q ss_pred HHHHhhhcCChHHHHHHHHHHHhcCC----CCC-hHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHH
Q 002549 645 IIDAYGRLKLWQKAESLVGCLRQRCA----PVD-RKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQAL 719 (909)
Q Consensus 645 l~~~~~~~~~~~~A~~~~~~~~~~~~----~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 719 (909)
.++.|-..|+|++|.+.|.++.+... +.+ ...|...+.+|.+ +++++|.+.++++ +..|
T Consensus 41 Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~-~~~~~Ai~~~~~A---------------~~~y 104 (282)
T PF14938_consen 41 AANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKK-GDPDEAIECYEKA---------------IEIY 104 (282)
T ss_dssp HHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-TTHHHHHHHHHHH---------------HHHH
T ss_pred HHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-hCHHHHHHHHHHH---------------HHHH
Confidence 45566677777777777776543210 000 1122222333322 2555555555554 3445
Q ss_pred HhcCchhhHHHHHHHHHhCCCCccHHHHHHHHHHHHhc-CCHHHHHHHHHHHHh----cCCCc--hHHHHHHHHHHHhcc
Q 002549 720 IVDGRLNELYVVIQELQDMDFKISKSSILLMLDAFARS-GNIFEVKKIYHGMKA----AGYFP--TMYLYRVMSGLFCKG 792 (909)
Q Consensus 720 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~----~~~~p--~~~~~~~l~~~~~~~ 792 (909)
...|++..|-..+.. +...|... |++++|.+.|++..+ .+ .+ -..++..++..+.+.
T Consensus 105 ~~~G~~~~aA~~~~~---------------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l 168 (282)
T PF14938_consen 105 REAGRFSQAAKCLKE---------------LAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARL 168 (282)
T ss_dssp HHCT-HHHHHHHHHH---------------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHT
T ss_pred HhcCcHHHHHHHHHH---------------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHh
Confidence 666666666665555 55567777 888888888888875 23 22 245667788889999
Q ss_pred CchHHHHHHHHHHHHCCCCCCH--H----hHHHHHHHhhccCCHHHHHHHHHHHHHcCCCCC---h---hhHHHHHHHHH
Q 002549 793 KRVRDVEAMVSEMKEAGFKPDL--S----IWNSMLKLYTGIEDFKKTIQVYQEIQEADLQPD---E---DSFNTLIIMYC 860 (909)
Q Consensus 793 g~~~~A~~~~~~~~~~~~~p~~--~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~---~~~~~l~~~~~ 860 (909)
|++++|+++|++........+. . .+...+-++...||...|.+.+++..+ ..|. + .....|+.++-
T Consensus 169 ~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~--~~~~F~~s~E~~~~~~l~~A~~ 246 (282)
T PF14938_consen 169 GRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCS--QDPSFASSREYKFLEDLLEAYE 246 (282)
T ss_dssp T-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGT--TSTTSTTSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCCCcHHHHHHHHHHHHHH
Confidence 9999999999998764322221 1 122233345556899999999999887 5553 1 23445556655
Q ss_pred hcCC---hhhHHHHHHHH
Q 002549 861 RDCR---PEEGLSLMHEM 875 (909)
Q Consensus 861 ~~g~---~~~A~~~~~~~ 875 (909)
.|+ +.+|+.-|+.+
T Consensus 247 -~~D~e~f~~av~~~d~~ 263 (282)
T PF14938_consen 247 -EGDVEAFTEAVAEYDSI 263 (282)
T ss_dssp -TT-CCCHHHHCHHHTTS
T ss_pred -hCCHHHHHHHHHHHccc
Confidence 344 45555555554
No 164
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.91 E-value=0.00014 Score=62.62 Aligned_cols=94 Identities=12% Similarity=0.095 Sum_probs=70.1
Q ss_pred HHHHHHHHHhccCchHHHHHHHHHHHHCCCCCCH----HhHHHHHHHhhccCCHHHHHHHHHHHHHcCCCCC----hhhH
Q 002549 781 LYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDL----SIWNSMLKLYTGIEDFKKTIQVYQEIQEADLQPD----EDSF 852 (909)
Q Consensus 781 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~ 852 (909)
++-.++..+.+.|++++|.+.++++.+. .|+. ..+..++.++...|++++|...+++++. ..|+ ..++
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~~ 79 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKK--YPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVK--KYPKSPKAPDAL 79 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHH--HCCCCCcccHHH
Confidence 4455666677788888888888888763 3432 3566677788888888888888888887 5564 3457
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHc
Q 002549 853 NTLIIMYCRDCRPEEGLSLMHEMRKL 878 (909)
Q Consensus 853 ~~l~~~~~~~g~~~~A~~~~~~~~~~ 878 (909)
..++.++.+.|++++|.+.++++.+.
T Consensus 80 ~~~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 80 LKLGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 77888888888888888888888854
No 165
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.89 E-value=1.8e-05 Score=50.15 Aligned_cols=33 Identities=42% Similarity=0.679 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCC
Q 002549 223 TYNAMISVYGRCGLFEKAEQLFKELESKGFFPD 255 (909)
Q Consensus 223 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 255 (909)
+||++|.+|++.|++++|.++|.+|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 566666666666666666666666666666665
No 166
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.88 E-value=0.0047 Score=60.15 Aligned_cols=202 Identities=13% Similarity=0.077 Sum_probs=115.4
Q ss_pred CchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhH---HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHH
Q 002549 638 DLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVW---NALIKAYAASGCYERARAVFNTMMRDGPSPTVDSING 714 (909)
Q Consensus 638 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 714 (909)
+.......+..+...|++++|.+.|+++... .|.+.... -.++.+|.+.+++++|...+++.++..|......+..
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~-yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNR-YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 3444556677778889999999999998876 45444443 3566788889999999999999999877644444444
Q ss_pred HHHHHHhcCchhhHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccCc
Q 002549 715 LLQALIVDGRLNELYVVIQELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYHGMKAAGYFPTMYLYRVMSGLFCKGKR 794 (909)
Q Consensus 715 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 794 (909)
.+.+.+.... ....+......+ . .........+|...|+.+++ .|..+.-
T Consensus 110 Y~~g~~~~~~---~~~~~~~~~~~~----~--------~~rD~~~~~~A~~~~~~li~---------------~yP~S~y 159 (243)
T PRK10866 110 YMRGLTNMAL---DDSALQGFFGVD----R--------SDRDPQHARAAFRDFSKLVR---------------GYPNSQY 159 (243)
T ss_pred HHHHHhhhhc---chhhhhhccCCC----c--------cccCHHHHHHHHHHHHHHHH---------------HCcCChh
Confidence 4444331100 000010000000 0 00000112234444444443 2223333
Q ss_pred hHHHHHHHHHHHHCCCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHcCCCCC----hhhHHHHHHHHHhcCChhhHHH
Q 002549 795 VRDVEAMVSEMKEAGFKPDLSIWNSMLKLYTGIEDFKKTIQVYQEIQEADLQPD----EDSFNTLIIMYCRDCRPEEGLS 870 (909)
Q Consensus 795 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~ 870 (909)
..+|...+..+.+. + - .--..++.-|.+.|.+.-|+.-++.+++ --|+ ..+...++.+|...|..++|.+
T Consensus 160 a~~A~~rl~~l~~~-l--a-~~e~~ia~~Y~~~~~y~AA~~r~~~v~~--~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~ 233 (243)
T PRK10866 160 TTDATKRLVFLKDR-L--A-KYELSVAEYYTKRGAYVAVVNRVEQMLR--DYPDTQATRDALPLMENAYRQLQLNAQADK 233 (243)
T ss_pred HHHHHHHHHHHHHH-H--H-HHHHHHHHHHHHcCchHHHHHHHHHHHH--HCCCCchHHHHHHHHHHHHHHcCChHHHHH
Confidence 44555444443320 0 0 0111345567777888888888888887 4553 3567778888888888888888
Q ss_pred HHHHHH
Q 002549 871 LMHEMR 876 (909)
Q Consensus 871 ~~~~~~ 876 (909)
+...+.
T Consensus 234 ~~~~l~ 239 (243)
T PRK10866 234 VAKIIA 239 (243)
T ss_pred HHHHHh
Confidence 776654
No 167
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.87 E-value=0.00018 Score=59.09 Aligned_cols=94 Identities=17% Similarity=0.202 Sum_probs=57.3
Q ss_pred HHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHh
Q 002549 642 YVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQALIV 721 (909)
Q Consensus 642 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 721 (909)
+..++..+...|++++|...++++.+. .+.+..++..++.++...|++++|.+.++...+..+. +..++..++..+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALEL-DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-NAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhc-CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHHHHHHH
Confidence 445566666666777777777766654 3444456666666677777777777777776665544 33455555555666
Q ss_pred cCchhhHHHHHHHHHh
Q 002549 722 DGRLNELYVVIQELQD 737 (909)
Q Consensus 722 ~g~~~~A~~~~~~~~~ 737 (909)
.|++++|...+....+
T Consensus 81 ~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 81 LGKYEEALEAYEKALE 96 (100)
T ss_pred HHhHHHHHHHHHHHHc
Confidence 6666666665555443
No 168
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.85 E-value=0.0004 Score=59.71 Aligned_cols=98 Identities=18% Similarity=0.151 Sum_probs=57.4
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCC---hHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--cccHHHH
Q 002549 641 IYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVD---RKVWNALIKAYAASGCYERARAVFNTMMRDGPSPT--VDSINGL 715 (909)
Q Consensus 641 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l 715 (909)
.+..++..+.+.|++++|.+.|+.+.+. .|.+ ...+..++.++...|+++.|...|+.++...|... ...+..+
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKK-YPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH-CCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 4455666666666677777666666554 2222 34555566667777777777777777766544421 2335555
Q ss_pred HHHHHhcCchhhHHHHHHHHHhCC
Q 002549 716 LQALIVDGRLNELYVVIQELQDMD 739 (909)
Q Consensus 716 ~~~~~~~g~~~~A~~~~~~~~~~~ 739 (909)
..++.+.|++++|...++++.+..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHC
Confidence 555666666666666666655543
No 169
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.84 E-value=0.00019 Score=74.66 Aligned_cols=94 Identities=11% Similarity=0.065 Sum_probs=51.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccCchHHHHHHHHHHHHCCCCCC-HHhHHHHHHHhhccCC
Q 002549 751 LDAFARSGNIFEVKKIYHGMKAAGYFPTMYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPD-LSIWNSMLKLYTGIED 829 (909)
Q Consensus 751 ~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 829 (909)
...+...|++++|+..|+++++.. +.+...|..++.+|.+.|++++|+..++++++ +.|+ ...|..++.+|...|+
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~--l~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIE--LDPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHhCC
Confidence 344455566666666666665532 11344555555555566666666666666655 3343 2445555555555666
Q ss_pred HHHHHHHHHHHHHcCCCCCh
Q 002549 830 FKKTIQVYQEIQEADLQPDE 849 (909)
Q Consensus 830 ~~~A~~~~~~~~~~~~~p~~ 849 (909)
+++|+..|+++++ +.|+.
T Consensus 86 ~~eA~~~~~~al~--l~P~~ 103 (356)
T PLN03088 86 YQTAKAALEKGAS--LAPGD 103 (356)
T ss_pred HHHHHHHHHHHHH--hCCCC
Confidence 6666666666665 55543
No 170
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.83 E-value=0.049 Score=55.25 Aligned_cols=50 Identities=10% Similarity=0.071 Sum_probs=31.0
Q ss_pred hhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHH
Q 002549 649 YGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTM 700 (909)
Q Consensus 649 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 700 (909)
+..+|++.++.-.-.-+.+ +.|++.+|..++-++....++++|.+++..+
T Consensus 472 Lysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 472 LYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 3455666666554444444 3556777777776666667777777777665
No 171
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.80 E-value=3.3e-05 Score=48.49 Aligned_cols=32 Identities=38% Similarity=0.630 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCC
Q 002549 223 TYNAMISVYGRCGLFEKAEQLFKELESKGFFP 254 (909)
Q Consensus 223 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 254 (909)
+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555555544
No 172
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.78 E-value=0.00069 Score=62.54 Aligned_cols=96 Identities=15% Similarity=0.211 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHhccCchHHHHHHHHHHHHCCCCC-C-HHhHHHHHHHhhccCCHHHHHHHHHHHHHcCCCCC-hhhHHHH
Q 002549 779 MYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKP-D-LSIWNSMLKLYTGIEDFKKTIQVYQEIQEADLQPD-EDSFNTL 855 (909)
Q Consensus 779 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l 855 (909)
...+..++..+...|++++|+..|+++++..-.+ + ...+..++.++...|++++|+..++++++ +.|+ ...+..+
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l 112 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE--LNPKQPSALNNI 112 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcccHHHHHHH
Confidence 3455666677777788888888887776532112 1 24677777778888888888888888887 6774 3666677
Q ss_pred HHHHHhcCC--------------hhhHHHHHHHHH
Q 002549 856 IIMYCRDCR--------------PEEGLSLMHEMR 876 (909)
Q Consensus 856 ~~~~~~~g~--------------~~~A~~~~~~~~ 876 (909)
+.+|...|+ +++|.+++++..
T Consensus 113 g~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~ 147 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAI 147 (172)
T ss_pred HHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHH
Confidence 777777665 455666666655
No 173
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.77 E-value=0.00046 Score=71.85 Aligned_cols=92 Identities=17% Similarity=0.036 Sum_probs=64.5
Q ss_pred HHhhcCChhhHHHHHHHHHHcCCCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHH
Q 002549 612 AYCKMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYE 691 (909)
Q Consensus 612 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 691 (909)
.+...|+++.|+..|++++. +.|++..++..++.+|...|++++|+..++++++. .|.+...|..++.+|...|+++
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~--~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l-~P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAID--LDPNNAELYADRAQANIKLGNFTEAVADANKAIEL-DPSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CcCCHHHHHHHHHHHHHhCCHH
Confidence 34455666677777766666 56677777777777777777777777777777765 4556667777777777777777
Q ss_pred HHHHHHHHHHHcCCC
Q 002549 692 RARAVFNTMMRDGPS 706 (909)
Q Consensus 692 ~A~~~~~~~~~~~~~ 706 (909)
+|...|+++++.+|.
T Consensus 88 eA~~~~~~al~l~P~ 102 (356)
T PLN03088 88 TAKAALEKGASLAPG 102 (356)
T ss_pred HHHHHHHHHHHhCCC
Confidence 777777777775544
No 174
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.76 E-value=0.00035 Score=57.26 Aligned_cols=92 Identities=20% Similarity=0.190 Sum_probs=62.9
Q ss_pred HHHHhhcCChhhHHHHHHHHHHcCCCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCC
Q 002549 610 VVAYCKMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGC 689 (909)
Q Consensus 610 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 689 (909)
...+...|++++|...+..+.. ..|++..++..++..+...+++++|.+.++.+.+. .+.+...+..++.++...|+
T Consensus 7 a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 83 (100)
T cd00189 7 GNLYYKLGDYDEALEYYEKALE--LDPDNADAYYNLAAAYYKLGKYEEALEDYEKALEL-DPDNAKAYYNLGLAYYKLGK 83 (100)
T ss_pred HHHHHHHhcHHHHHHHHHHHHh--cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCcchhHHHHHHHHHHHHHh
Confidence 3344445555555555555544 34555566667777777778888888888877765 35556677788888888888
Q ss_pred HHHHHHHHHHHHHcC
Q 002549 690 YERARAVFNTMMRDG 704 (909)
Q Consensus 690 ~~~A~~~~~~~~~~~ 704 (909)
++.|...+....+..
T Consensus 84 ~~~a~~~~~~~~~~~ 98 (100)
T cd00189 84 YEEALEAYEKALELD 98 (100)
T ss_pred HHHHHHHHHHHHccC
Confidence 888888888887644
No 175
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.71 E-value=0.00012 Score=55.34 Aligned_cols=63 Identities=19% Similarity=0.428 Sum_probs=47.1
Q ss_pred CHHhHHHHHHHhhccCCHHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcC-ChhhHHHHHHHHHH
Q 002549 813 DLSIWNSMLKLYTGIEDFKKTIQVYQEIQEADLQPDE-DSFNTLIIMYCRDC-RPEEGLSLMHEMRK 877 (909)
Q Consensus 813 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g-~~~~A~~~~~~~~~ 877 (909)
+..+|..++..+...|++++|+..|+++++ +.|+. ..+..++.+|...| ++++|++.+++.++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~--~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIE--LDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHH--HSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 345677777777777888888888888887 67754 67777888888887 67888888777764
No 176
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.70 E-value=0.0085 Score=58.38 Aligned_cols=201 Identities=10% Similarity=0.042 Sum_probs=115.8
Q ss_pred ChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCccc--HHHHHHHHHhcCchhhHHHHHHHHHhCCCCccHHHHHHH
Q 002549 673 DRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDS--INGLLQALIVDGRLNELYVVIQELQDMDFKISKSSILLM 750 (909)
Q Consensus 673 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 750 (909)
+...+...+..+...|++++|.+.|+.+....|.+.... .-.++.++.+.+++++|+..++++.+.........+...
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y 110 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY 110 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence 444444556666778999999999999988776642221 134456667777777777777777766433222222111
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccCchHHHHHHHHHHHHCCCCCCHHhHHHHHHHhhccCCH
Q 002549 751 LDAFARSGNIFEVKKIYHGMKAAGYFPTMYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDLSIWNSMLKLYTGIEDF 830 (909)
Q Consensus 751 ~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 830 (909)
..+.+. .......+..... +.+ .........+|++.|+++++. -|++.- .
T Consensus 111 ~~g~~~---~~~~~~~~~~~~~--~~~----------~~rD~~~~~~A~~~~~~li~~--yP~S~y-------------a 160 (243)
T PRK10866 111 MRGLTN---MALDDSALQGFFG--VDR----------SDRDPQHARAAFRDFSKLVRG--YPNSQY-------------T 160 (243)
T ss_pred HHHHhh---hhcchhhhhhccC--CCc----------cccCHHHHHHHHHHHHHHHHH--CcCChh-------------H
Confidence 111110 0000000100000 000 000112245688888888873 566632 2
Q ss_pred HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHH--cCCCCChhhHHHHHHHHhccCCHHHHHHhh
Q 002549 831 KKTIQVYQEIQEADLQPDEDSFNTLIIMYCRDCRPEEGLSLMHEMRK--LGLEPKLDTYKSLISAFGKQQQLEQAEELL 907 (909)
Q Consensus 831 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 907 (909)
++|......+.+. - ...-..++..|.+.|+|.-|..-++.+++ .+..........++.+|.+.|..++|..+.
T Consensus 161 ~~A~~rl~~l~~~---l-a~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~ 235 (243)
T PRK10866 161 TDATKRLVFLKDR---L-AKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVA 235 (243)
T ss_pred HHHHHHHHHHHHH---H-HHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 3333322222220 0 02233778899999999999999999997 344444667778899999999999998865
No 177
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.70 E-value=0.0013 Score=71.48 Aligned_cols=151 Identities=11% Similarity=0.113 Sum_probs=89.6
Q ss_pred CCCChHhHHHHHHHHHH--c---CCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCchhhHHHHHHHHHhCCCCccH
Q 002549 670 APVDRKVWNALIKAYAA--S---GCYERARAVFNTMMRDGPSPTVDSINGLLQALIVDGRLNELYVVIQELQDMDFKISK 744 (909)
Q Consensus 670 ~~~~~~~~~~l~~~~~~--~---g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 744 (909)
.+.+...|...+++... . ++.+.|.++|+++++.+|. ....|..+..++.....+ .+..
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~-~a~a~A~la~~~~~~~~~---------------~~~~ 396 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD-FTYAQAEKALADIVRHSQ---------------QPLD 396 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHhc---------------CCcc
Confidence 56677788777766433 2 2377899999999997776 445555554443222111 1100
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHhccCchHHHHHHHHHHHHCCCCCCHHhHHHHHHH
Q 002549 745 SSILLMLDAFARSGNIFEVKKIYHGMKAAG-YFPTMYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDLSIWNSMLKL 823 (909)
Q Consensus 745 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 823 (909)
.+++..+.+...+..... ...+...+..+.-.....|++++|...++++++ ..|+...|..++..
T Consensus 397 ------------~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~--L~ps~~a~~~lG~~ 462 (517)
T PRK10153 397 ------------EKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAID--LEMSWLNYVLLGKV 462 (517)
T ss_pred ------------HHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCHHHHHHHHHH
Confidence 012223333333333211 122345555555555556777777777777776 45666677777777
Q ss_pred hhccCCHHHHHHHHHHHHHcCCCCChhhH
Q 002549 824 YTGIEDFKKTIQVYQEIQEADLQPDEDSF 852 (909)
Q Consensus 824 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 852 (909)
|...|+.++|.+.|+++.. ++|...+|
T Consensus 463 ~~~~G~~~eA~~~~~~A~~--L~P~~pt~ 489 (517)
T PRK10153 463 YELKGDNRLAADAYSTAFN--LRPGENTL 489 (517)
T ss_pred HHHcCCHHHHHHHHHHHHh--cCCCCchH
Confidence 7777888888888888777 77765553
No 178
>PRK15331 chaperone protein SicA; Provisional
Probab=97.68 E-value=0.00089 Score=58.34 Aligned_cols=104 Identities=9% Similarity=0.006 Sum_probs=87.5
Q ss_pred cCCCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCccc
Q 002549 632 KGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDS 711 (909)
Q Consensus 632 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 711 (909)
.|++++........+.-+...|++++|..+|.-+.-. .+.+...|..|+.++...+++++|+..|..+...++. |..+
T Consensus 30 ~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~-d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p 107 (165)
T PRK15331 30 HGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIY-DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRP 107 (165)
T ss_pred hCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCc
Confidence 3466666667777888888999999999999988765 4667888889999999999999999999999887765 7777
Q ss_pred HHHHHHHHHhcCchhhHHHHHHHHHh
Q 002549 712 INGLLQALIVDGRLNELYVVIQELQD 737 (909)
Q Consensus 712 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 737 (909)
......+|...|+...|...|....+
T Consensus 108 ~f~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 108 VFFTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred cchHHHHHHHhCCHHHHHHHHHHHHh
Confidence 88889999999999999999988776
No 179
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.66 E-value=4.3e-05 Score=46.68 Aligned_cols=31 Identities=35% Similarity=0.725 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHcCC
Q 002549 115 QVYNAMMGIYARNGRFQKVQELLDLMRKRGC 145 (909)
Q Consensus 115 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~ 145 (909)
++||.++++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3799999999999999999999999998874
No 180
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.64 E-value=0.0018 Score=59.72 Aligned_cols=131 Identities=15% Similarity=0.115 Sum_probs=78.0
Q ss_pred chhhHHHHHHHHHhcccHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCCchHHHH
Q 002549 567 SKTMYESLIHSCEYNERFAEASQVFSDMRFYNIEPS--EDLYRSMVVAYCKMDFPETAHFIADQAEKKGIPFEDLSIYVD 644 (909)
Q Consensus 567 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 644 (909)
....+..+...+...|++++|...|++.......+. ...+..+...+...|++++|...+.+++. ..|++...+..
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~ 111 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE--LNPKQPSALNN 111 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcccHHHHHH
Confidence 444566666666677777777777777664332222 23455566666667777777777776666 45666666666
Q ss_pred HHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCc
Q 002549 645 IIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQALIVDGR 724 (909)
Q Consensus 645 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 724 (909)
++.++...|+...+..-++.+.. .+++|.+.+++++..+|. + +..++..+...|+
T Consensus 112 lg~~~~~~g~~~~a~~~~~~A~~---------------------~~~~A~~~~~~a~~~~p~-~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGDQDEAEA---------------------LFDKAAEYWKQAIRLAPN-N---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHcCChHhHhhCHHHHHH---------------------HHHHHHHHHHHHHhhCch-h---HHHHHHHHHhcCc
Confidence 67777666665554443333221 156777788887775443 2 4455555555544
No 181
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=0.0016 Score=62.67 Aligned_cols=105 Identities=18% Similarity=0.050 Sum_probs=82.1
Q ss_pred CCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCCCcc
Q 002549 634 IPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASG---CYERARAVFNTMMRDGPSPTVD 710 (909)
Q Consensus 634 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~ 710 (909)
.+|++..-|..|+.+|...|+...|...|.++.+. .++++..+..+..++..+. ...++..+|+++++.++. ++.
T Consensus 151 ~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL-~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~ir 228 (287)
T COG4235 151 QNPGDAEGWDLLGRAYMALGRASDALLAYRNALRL-AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIR 228 (287)
T ss_pred hCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHH
Confidence 57888888888888888888888888888888877 5667777777777655442 467788888888887776 777
Q ss_pred cHHHHHHHHHhcCchhhHHHHHHHHHhCCC
Q 002549 711 SINGLLQALIVDGRLNELYVVIQELQDMDF 740 (909)
Q Consensus 711 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 740 (909)
+...|...+.+.|++.+|...++.|.+...
T Consensus 229 al~lLA~~afe~g~~~~A~~~Wq~lL~~lp 258 (287)
T COG4235 229 ALSLLAFAAFEQGDYAEAAAAWQMLLDLLP 258 (287)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhcCC
Confidence 777777888888888888888888877653
No 182
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.61 E-value=0.00089 Score=69.41 Aligned_cols=119 Identities=16% Similarity=0.185 Sum_probs=62.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 002549 255 DAVTYNSLLYAFAREGNVEKVKEISENMLKMG--FGKDEMTYNTIIHMYGKQGQHDVALQLYRDMKLSGRNPDVVTYTVL 332 (909)
Q Consensus 255 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 332 (909)
+......+++.+....+++.+..++-+..... ...-..|..++++.|.+.|..+.++++++.=...|+.||..+++.|
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 44445555555555555555555555554431 1111233345556666666666666666555555666666666666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 002549 333 IDSLGKANKISEAANVMSEMLDASVKPTLRTYSALICGYAK 373 (909)
Q Consensus 333 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 373 (909)
++.+.+.|++..|.++...|...+...+..|+...+.+|.+
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 66666666666666665555554444444444444444433
No 183
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.60 E-value=0.0003 Score=52.31 Aligned_cols=62 Identities=16% Similarity=0.238 Sum_probs=48.9
Q ss_pred HHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 002549 644 DIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPS 706 (909)
Q Consensus 644 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 706 (909)
.++..+...|++++|++.|+.+++. .|.+..++..++.++...|++++|...|+++++..|.
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~-~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~ 63 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQ-DPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPD 63 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCC-STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 3567778888888888888888877 4667888888888888888888888888888876554
No 184
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.59 E-value=0.0014 Score=60.27 Aligned_cols=94 Identities=12% Similarity=0.009 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCc--hHHHHHHHHHHHhccCchHHHHHHHHHHHHCCCCCCH-HhHHHHH
Q 002549 745 SSILLMLDAFARSGNIFEVKKIYHGMKAAGYFP--TMYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDL-SIWNSML 821 (909)
Q Consensus 745 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~ 821 (909)
..+..++..+...|++++|...|++.......| ...++..+...+...|++++|+..++++.+ ..|+. .++..++
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~--~~~~~~~~~~~la 113 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE--RNPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCcHHHHHHHH
Confidence 344555666667788888888888776542222 234677788888888888888888888876 34443 4566666
Q ss_pred HHhh-------ccCCHHHHHHHHHHH
Q 002549 822 KLYT-------GIEDFKKTIQVYQEI 840 (909)
Q Consensus 822 ~~~~-------~~g~~~~A~~~~~~~ 840 (909)
..+. ..|++++|+..+++.
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 6666 667766555444443
No 185
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.59 E-value=0.0019 Score=54.16 Aligned_cols=52 Identities=15% Similarity=0.121 Sum_probs=21.6
Q ss_pred hcCChhhHHHHHHHHHHcCCCCCC-chHHHHHHHHhhhcCChHHHHHHHHHHH
Q 002549 615 KMDFPETAHFIADQAEKKGIPFED-LSIYVDIIDAYGRLKLWQKAESLVGCLR 666 (909)
Q Consensus 615 ~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 666 (909)
..|+.++|+.+|++++..|+.... ..++..++.++...|++++|..++++..
T Consensus 13 ~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~ 65 (120)
T PF12688_consen 13 SLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEAL 65 (120)
T ss_pred hcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 334444444444444443333221 2233344444444444444444444443
No 186
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.59 E-value=0.0022 Score=53.77 Aligned_cols=97 Identities=19% Similarity=0.073 Sum_probs=71.5
Q ss_pred hHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCC--hHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCc--ccHHHH
Q 002549 640 SIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVD--RKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTV--DSINGL 715 (909)
Q Consensus 640 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l 715 (909)
.+.+.++.++-..|+.++|+.+|++.+..|.... ...+-.+..++...|++++|..+++......|.+.. .....+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 3566788889999999999999999998876544 446667788899999999999999999886554211 112223
Q ss_pred HHHHHhcCchhhHHHHHHHHH
Q 002549 716 LQALIVDGRLNELYVVIQELQ 736 (909)
Q Consensus 716 ~~~~~~~g~~~~A~~~~~~~~ 736 (909)
..++...|++++|++++-...
T Consensus 82 Al~L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHH
Confidence 445667788888887776544
No 187
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.58 E-value=0.00028 Score=53.27 Aligned_cols=65 Identities=17% Similarity=0.179 Sum_probs=40.9
Q ss_pred chHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcC-CHHHHHHHHHHHHHcC
Q 002549 639 LSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASG-CYERARAVFNTMMRDG 704 (909)
Q Consensus 639 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~ 704 (909)
+..+..++..+...|++++|+..|+++++. .|.+..+|..++.+|...| ++++|++.++++++.+
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~-~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~ 68 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIEL-DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD 68 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHH-STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence 344555666666666666666666666665 4555666666666666666 5666666666666543
No 188
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.58 E-value=0.0025 Score=61.41 Aligned_cols=112 Identities=13% Similarity=0.065 Sum_probs=91.4
Q ss_pred chHHHHHHHHHHHhccCchHHHHHHHHHHHHCCCCCCH-HhHHHHHHHhhcc---CCHHHHHHHHHHHHHcCCCCC-hhh
Q 002549 777 PTMYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDL-SIWNSMLKLYTGI---EDFKKTIQVYQEIQEADLQPD-EDS 851 (909)
Q Consensus 777 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~p~-~~~ 851 (909)
-|..-|..|...|...|+++.|...|.++.+ +.||. ..+..+..++..+ ....+|.+++++++. .+|+ ..+
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r--L~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~--~D~~~ira 229 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALR--LAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALA--LDPANIRA 229 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHh--cCCccHHH
Confidence 3788999999999999999999999999987 55554 6777777765543 367889999999999 8995 588
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 002549 852 FNTLIIMYCRDCRPEEGLSLMHEMRKLGLEPKLDTYKSLISAF 894 (909)
Q Consensus 852 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 894 (909)
...|+..++..|++.+|...++.|.+. .|..+.++.++...
T Consensus 230 l~lLA~~afe~g~~~~A~~~Wq~lL~~--lp~~~~rr~~ie~~ 270 (287)
T COG4235 230 LSLLAFAAFEQGDYAEAAAAWQMLLDL--LPADDPRRSLIERS 270 (287)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhc--CCCCCchHHHHHHH
Confidence 889999999999999999999999954 55556666666554
No 189
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.56 E-value=0.00018 Score=53.56 Aligned_cols=56 Identities=14% Similarity=0.299 Sum_probs=35.1
Q ss_pred HHHHhhccCCHHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCChhhHHHHHHHHHH
Q 002549 820 MLKLYTGIEDFKKTIQVYQEIQEADLQPDE-DSFNTLIIMYCRDCRPEEGLSLMHEMRK 877 (909)
Q Consensus 820 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 877 (909)
++..+...|++++|++.|+++++ ..|+. ..+..++.++...|++++|..+++++.+
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALK--QDPDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHC--CSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34455666666666666666666 55643 5666666666666666666666666653
No 190
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.56 E-value=0.0012 Score=68.41 Aligned_cols=124 Identities=12% Similarity=0.061 Sum_probs=81.8
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 002549 286 GFGKDEMTYNTIIHMYGKQGQHDVALQLYRDMKLS--GRNPDVVTYTVLIDSLGKANKISEAANVMSEMLDASVKPTLRT 363 (909)
Q Consensus 286 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 363 (909)
+.+.+......+++.+....+++.+..++.++... ....-..|..++++.|.+.|..++++.++..=..-|+.||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 33556666677777777777777777777776654 1112233455777777777777777777777777777777777
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 002549 364 YSALICGYAKAGNRLEAEKTFYCMRRSGIRPDHLAYSVMLDIFLRF 409 (909)
Q Consensus 364 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 409 (909)
++.|+..+.+.|++..|.++...|...+...+..|+..-+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 7777777777777777777777776665555556655555555444
No 191
>PRK15331 chaperone protein SicA; Provisional
Probab=97.55 E-value=0.0044 Score=54.14 Aligned_cols=89 Identities=9% Similarity=-0.032 Sum_probs=74.8
Q ss_pred HHHHhccCchHHHHHHHHHHHHCCCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCC
Q 002549 786 SGLFCKGKRVRDVEAMVSEMKEAGFKPDLSIWNSMLKLYTGIEDFKKTIQVYQEIQEADLQP-DEDSFNTLIIMYCRDCR 864 (909)
Q Consensus 786 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~ 864 (909)
..-+...|++++|+.+|+-+...+ .-|..-|..|+.+|...+++++|+..|..+.. +.+ |+..+.+.+.+|...|+
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~--l~~~dp~p~f~agqC~l~l~~ 120 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFT--LLKNDYRPVFFTGQCQLLMRK 120 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cccCCCCccchHHHHHHHhCC
Confidence 344558899999999999987632 12445578888888888999999999999988 666 56889999999999999
Q ss_pred hhhHHHHHHHHHH
Q 002549 865 PEEGLSLMHEMRK 877 (909)
Q Consensus 865 ~~~A~~~~~~~~~ 877 (909)
.++|.+.|+....
T Consensus 121 ~~~A~~~f~~a~~ 133 (165)
T PRK15331 121 AAKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999985
No 192
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.53 E-value=9.1e-05 Score=45.21 Aligned_cols=28 Identities=43% Similarity=0.781 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHHC
Q 002549 223 TYNAMISVYGRCGLFEKAEQLFKELESK 250 (909)
Q Consensus 223 ~~~~li~~~~~~g~~~~A~~~~~~m~~~ 250 (909)
+|++++++|++.|++++|.++|++|.+.
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHC
Confidence 3444444444444444444444444443
No 193
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.51 E-value=0.023 Score=53.93 Aligned_cols=186 Identities=13% Similarity=0.128 Sum_probs=97.7
Q ss_pred chHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCC---hHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHH
Q 002549 639 LSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVD---RKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGL 715 (909)
Q Consensus 639 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 715 (909)
...+...+..+...|++.+|+..|+.+... .|.+ ..+.-.++.++.+.|+++.|...+++.++..|......+...
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~-~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y 83 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDR-YPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY 83 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH--TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence 344555666677788888888888887765 3322 345556677788888888888888888887666333333333
Q ss_pred HHHHHhcCchhhHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccCch
Q 002549 716 LQALIVDGRLNELYVVIQELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYHGMKAAGYFPTMYLYRVMSGLFCKGKRV 795 (909)
Q Consensus 716 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 795 (909)
+.+.+......... ......+...+|...|+.++ ..|..+...
T Consensus 84 ~~g~~~~~~~~~~~----------------------~~~~D~~~~~~A~~~~~~li---------------~~yP~S~y~ 126 (203)
T PF13525_consen 84 MLGLSYYKQIPGIL----------------------RSDRDQTSTRKAIEEFEELI---------------KRYPNSEYA 126 (203)
T ss_dssp HHHHHHHHHHHHHH-----------------------TT---HHHHHHHHHHHHHH---------------HH-TTSTTH
T ss_pred HHHHHHHHhCccch----------------------hcccChHHHHHHHHHHHHHH---------------HHCcCchHH
Confidence 33222111110000 00111122233444444333 334444555
Q ss_pred HHHHHHHHHHHHCCCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHcCCCCCh----hhHHHHHHHHHhcCChhhH
Q 002549 796 RDVEAMVSEMKEAGFKPDLSIWNSMLKLYTGIEDFKKTIQVYQEIQEADLQPDE----DSFNTLIIMYCRDCRPEEG 868 (909)
Q Consensus 796 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A 868 (909)
.+|...+..+.+. + ..--..++..|.+.|.+..|..-++.+++ --|++ .+...++.+|.+.|..+.|
T Consensus 127 ~~A~~~l~~l~~~-l---a~~e~~ia~~Y~~~~~y~aA~~r~~~v~~--~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 127 EEAKKRLAELRNR-L---AEHELYIARFYYKRGKYKAAIIRFQYVIE--NYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHHHHHHHH-H---HHHHHHHHHHHHCTT-HHHHHHHHHHHHH--HSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHHHHH-H---HHHHHHHHHHHHHcccHHHHHHHHHHHHH--HCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 5555555544320 0 00112245567778888888888888887 45653 3556777788888876644
No 194
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.51 E-value=0.0042 Score=67.65 Aligned_cols=118 Identities=9% Similarity=-0.115 Sum_probs=74.0
Q ss_pred hhhHHHHHHHHHHcCCCCCCchHHHHHHHHhhhc--------CChHHHHHHHHHHHhc-CCCCChHhHHHHHHHHHHcCC
Q 002549 619 PETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRL--------KLWQKAESLVGCLRQR-CAPVDRKVWNALIKAYAASGC 689 (909)
Q Consensus 619 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~ 689 (909)
.+.|+.+|+++++ ++|+...++..++.++... .++..+.+..++.... ..+.++.++.++...+...|+
T Consensus 358 ~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~ 435 (517)
T PRK10153 358 LNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGK 435 (517)
T ss_pred HHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCC
Confidence 4456666666665 5666655555554444322 1233444444443332 134456677777766667788
Q ss_pred HHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCchhhHHHHHHHHHhCCC
Q 002549 690 YERARAVFNTMMRDGPSPTVDSINGLLQALIVDGRLNELYVVIQELQDMDF 740 (909)
Q Consensus 690 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 740 (909)
+++|...++++++.+ |+...|..++.++...|++++|.+.+++....+.
T Consensus 436 ~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P 484 (517)
T PRK10153 436 TDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRP 484 (517)
T ss_pred HHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 888888888888855 4566777777878888888888888877776553
No 195
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.47 E-value=0.0023 Score=58.32 Aligned_cols=114 Identities=21% Similarity=0.356 Sum_probs=71.3
Q ss_pred HHHHHhhhCCCCCHHHHHHHHHHHHHc-----CChhHHHHHHHHHHHcCCCCChHHHHHHHHHHHHcCCCCchHHHHHHH
Q 002549 101 ETFMRAESAVDDTVQVYNAMMGIYARN-----GRFQKVQELLDLMRKRGCEPDLVSFNTLINARLRSGAMVPNLGVDLLN 175 (909)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~a~~~~~ 175 (909)
..|.++... ..+-.+|..++..|.+. |..+=....+..|.+.|+.-|..+|+.||+.+=+ |.+.+ ..+|+
T Consensus 35 ~~f~~~~~~-~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fvp---~n~fQ 109 (228)
T PF06239_consen 35 ELFERAPGQ-AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFVP---RNFFQ 109 (228)
T ss_pred HHHHHHhhc-cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCccc---ccHHH
Confidence 344444222 34666677777766643 6666677778899999999999999999998865 33321 12222
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 002549 176 EVRRSGLRPDIITYNTIISACSRESNLEEAMKVYGDLEAHNCQPDLWTYNAMISVYGRCGL 236 (909)
Q Consensus 176 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 236 (909)
.+-- -|- .+-+-|+.++++|...|+.||..++..++..|++.+.
T Consensus 110 ~~F~---------------hyp--~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 110 AEFM---------------HYP--RQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHhc---------------cCc--HHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 2211 111 2345667777777777777777777777777665544
No 196
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.47 E-value=0.0027 Score=50.82 Aligned_cols=83 Identities=12% Similarity=0.242 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCC-CCChHHHHHHHHHHHHcCCCCc------hHHHHHHHHHHHCCCCCCHHH
Q 002549 116 VYNAMMGIYARNGRFQKVQELLDLMRKRGC-EPDLVSFNTLINARLRSGAMVP------NLGVDLLNEVRRSGLRPDIIT 188 (909)
Q Consensus 116 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~-~~~~~~~~~ll~~~~~~~~~~~------~~a~~~~~~~~~~~~~~~~~~ 188 (909)
+-...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++...-.. -..+.+++.|...+++|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 445566677777999999999999999999 8999999999999887753111 123455666666666666666
Q ss_pred HHHHHHHHHh
Q 002549 189 YNTIISACSR 198 (909)
Q Consensus 189 ~~~li~~~~~ 198 (909)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 6666665543
No 197
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.41 E-value=0.019 Score=60.34 Aligned_cols=99 Identities=14% Similarity=0.066 Sum_probs=55.0
Q ss_pred chHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHH
Q 002549 639 LSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQA 718 (909)
Q Consensus 639 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 718 (909)
......++..+.+...+.-|.++|.++-.. .+++......++|.+|..+.++.-+ --...|.-..+.
T Consensus 747 re~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe----~~~dVy~pyaqw 813 (1081)
T KOG1538|consen 747 REPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPE----FKDDVYMPYAQW 813 (1081)
T ss_pred hhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCcc----ccccccchHHHH
Confidence 333444445555555666666666665432 2455666777888888877777633 222233334444
Q ss_pred HHhcCchhhHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 002549 719 LIVDGRLNELYVVIQELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYHGMKA 772 (909)
Q Consensus 719 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 772 (909)
+++..+++||.+ +|-++|+-.+|..+++++..
T Consensus 814 LAE~DrFeEAqk----------------------AfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 814 LAENDRFEEAQK----------------------AFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred hhhhhhHHHHHH----------------------HHHHhcchHHHHHHHHHhhh
Confidence 555555555444 34445666666666666654
No 198
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.40 E-value=0.00028 Score=53.17 Aligned_cols=58 Identities=19% Similarity=0.347 Sum_probs=40.0
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhH
Q 002549 826 GIEDFKKTIQVYQEIQEADLQPD-EDSFNTLIIMYCRDCRPEEGLSLMHEMRKLGLEPKLDTY 887 (909)
Q Consensus 826 ~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 887 (909)
..|++++|++.|+++++ ..|+ ......++.+|.+.|++++|.++++++... .|+...|
T Consensus 3 ~~~~~~~A~~~~~~~l~--~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~ 61 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQ--RNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEY 61 (68)
T ss_dssp HTTHHHHHHHHHHHHHH--HTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHH
T ss_pred hccCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHH
Confidence 45777888888888877 6774 466667788888888888888888777743 4553333
No 199
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.38 E-value=0.076 Score=49.68 Aligned_cols=131 Identities=9% Similarity=0.003 Sum_probs=75.8
Q ss_pred HHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHH----
Q 002549 641 IYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLL---- 716 (909)
Q Consensus 641 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~---- 716 (909)
+.+.++..+...|.+.-...++.++++...+.++.....|+++-.+.||.+.|...|++..+...+.|..+.+.++
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 4455666666777777777777777776556777777788887778888888888888665544443444444333
Q ss_pred -HHHHhcCchhhHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 002549 717 -QALIVDGRLNELYVVIQELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYHGMKA 772 (909)
Q Consensus 717 -~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 772 (909)
..|.-++++-+|...+.++...+ +.++...+.-.-+..-.|+..+|.+..+.+..
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~ 314 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQ 314 (366)
T ss_pred hhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 22334455555555555554433 11222222222222334555666666666555
No 200
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.32 E-value=0.002 Score=63.08 Aligned_cols=94 Identities=11% Similarity=0.071 Sum_probs=64.1
Q ss_pred HHHHHHHHHhccCchHHHHHHHHHHHHCCCCCCH----HhHHHHHHHhhccCCHHHHHHHHHHHHHcCCCCC----hhhH
Q 002549 781 LYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDL----SIWNSMLKLYTGIEDFKKTIQVYQEIQEADLQPD----EDSF 852 (909)
Q Consensus 781 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~ 852 (909)
.|...+..+.+.|++++|+..|+.+++ ..|+. ..+.-++.+|...|++++|+..|+++++ ..|+ ..++
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~--~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~--~yP~s~~~~dAl 220 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVK--KYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVK--NYPKSPKAADAM 220 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH--HCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCcchhHHH
Confidence 344444444556777777777777776 34544 3566677777778888888888888877 4554 3456
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHc
Q 002549 853 NTLIIMYCRDCRPEEGLSLMHEMRKL 878 (909)
Q Consensus 853 ~~l~~~~~~~g~~~~A~~~~~~~~~~ 878 (909)
..++.++...|++++|.++|+++.+.
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 66777777788888888888887743
No 201
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.31 E-value=0.054 Score=57.20 Aligned_cols=56 Identities=14% Similarity=0.078 Sum_probs=32.7
Q ss_pred CHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHh
Q 002549 602 SEDLYRSMVVAYCKMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQ 667 (909)
Q Consensus 602 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 667 (909)
+.+++..+...+.+...+--|.++|..+-. ...+.+...+.++|++|..+-++..+
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hPe 801 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHPE 801 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCcc
Confidence 344455555555555556666666655432 23455666777777777777766554
No 202
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.30 E-value=0.0039 Score=49.94 Aligned_cols=71 Identities=23% Similarity=0.407 Sum_probs=33.7
Q ss_pred HHhcCCHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 002549 301 YGKQGQHDVALQLYRDMKLSGR-NPDVVTYTVLIDSLGKAN--------KISEAANVMSEMLDASVKPTLRTYSALICGY 371 (909)
Q Consensus 301 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g--------~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 371 (909)
+...+++.....+|+.+++.|+ .|++.+|+.++.+.++.. ++-+.+.+|+.|+..+++|+..+|+.++..+
T Consensus 35 ~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl~~L 114 (120)
T PF08579_consen 35 CFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVLGSL 114 (120)
T ss_pred HHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHH
Confidence 3333555555555555555554 455555555544444321 1223444455555555555555555555444
No 203
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.23 E-value=0.0059 Score=61.20 Aligned_cols=94 Identities=16% Similarity=0.096 Sum_probs=40.9
Q ss_pred HHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCCchHHHHHHHHhhh-cCChHHHHHHHHHHHhcCCCCChHhHHHHHHHH
Q 002549 606 YRSMVVAYCKMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGR-LKLWQKAESLVGCLRQRCAPVDRKVWNALIKAY 684 (909)
Q Consensus 606 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 684 (909)
|..++....+.+..+.|+.+|.++.+ ..+....+|...+..-.. .++.+.|..+|+..++. ++.+...|...+..+
T Consensus 4 ~i~~m~~~~r~~g~~~aR~vF~~a~~--~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 4 WIQYMRFMRRTEGIEAARKVFKRARK--DKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC--CCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 44444444444445555555555542 122233444444444222 23333355555544444 444444444444444
Q ss_pred HHcCCHHHHHHHHHHHHH
Q 002549 685 AASGCYERARAVFNTMMR 702 (909)
Q Consensus 685 ~~~g~~~~A~~~~~~~~~ 702 (909)
...|+.+.|..+|++.+.
T Consensus 81 ~~~~d~~~aR~lfer~i~ 98 (280)
T PF05843_consen 81 IKLNDINNARALFERAIS 98 (280)
T ss_dssp HHTT-HHHHHHHHHHHCC
T ss_pred HHhCcHHHHHHHHHHHHH
Confidence 444555555555555443
No 204
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.22 E-value=0.085 Score=49.39 Aligned_cols=135 Identities=11% Similarity=0.048 Sum_probs=79.8
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCC----CCchHHHHHH
Q 002549 571 YESLIHSCEYNERFAEASQVFSDMRFYNIEPSEDLYRSMVVAYCKMDFPETAHFIADQAEKKGIPF----EDLSIYVDII 646 (909)
Q Consensus 571 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~~l~ 646 (909)
.+.++.++.-.|.+.-.+.++++.++...+-++.....+...-.+.|+.+.|..+++...+..-.. ....+.....
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 456666666677777777777777776555566666666666677777777777777554421111 1233444455
Q ss_pred HHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 002549 647 DAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPS 706 (909)
Q Consensus 647 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 706 (909)
..|.-++++.+|...+.+++.. .+.++..-|.-+-+..-.|+..+|++..+.|....|.
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~-D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRM-DPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPR 318 (366)
T ss_pred hheecccchHHHHHHHhhcccc-CCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 5556666666666666666554 3444444444444444456666666666666665444
No 205
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.18 E-value=0.0058 Score=59.92 Aligned_cols=90 Identities=10% Similarity=-0.023 Sum_probs=59.1
Q ss_pred hhcCChhhHHHHHHHHHHcCCCCCC---chHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCC---hHhHHHHHHHHHHc
Q 002549 614 CKMDFPETAHFIADQAEKKGIPFED---LSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVD---RKVWNALIKAYAAS 687 (909)
Q Consensus 614 ~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~ 687 (909)
.+.|++++|+..|+..++ ..|++ +.++..++.+|...|++++|...|+.+++. .|.+ ..++..++.++...
T Consensus 154 ~~~~~y~~Ai~af~~fl~--~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~-yP~s~~~~dAl~klg~~~~~~ 230 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVK--KYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKN-YPKSPKAADAMFKVGVIMQDK 230 (263)
T ss_pred HhcCCHHHHHHHHHHHHH--HCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-CCCCcchhHHHHHHHHHHHHc
Confidence 334555555555555554 33444 456777788888888888888888887765 3332 44455556677778
Q ss_pred CCHHHHHHHHHHHHHcCCC
Q 002549 688 GCYERARAVFNTMMRDGPS 706 (909)
Q Consensus 688 g~~~~A~~~~~~~~~~~~~ 706 (909)
|+++.|..+|+++++..|.
T Consensus 231 g~~~~A~~~~~~vi~~yP~ 249 (263)
T PRK10803 231 GDTAKAKAVYQQVIKKYPG 249 (263)
T ss_pred CCHHHHHHHHHHHHHHCcC
Confidence 8888888888888876655
No 206
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.16 E-value=0.013 Score=55.58 Aligned_cols=189 Identities=12% Similarity=0.110 Sum_probs=95.1
Q ss_pred hHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCc--ccHHHHHHHHHhcCchhhHHHHHHHHHhCCCCccHHHHHHHH
Q 002549 674 RKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTV--DSINGLLQALIVDGRLNELYVVIQELQDMDFKISKSSILLML 751 (909)
Q Consensus 674 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 751 (909)
...+...+..+...|++++|...|+.+....|.... .....++.++.+.|++++|...++++++.-.......+....
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~ 84 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYM 84 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHH
Confidence 344455566667778888888888888777655221 223344455555556666655555555432211111111100
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccCchHHHHHHHHHHHHCCCCCCHHhHHHHHHHhhccCCHH
Q 002549 752 DAFARSGNIFEVKKIYHGMKAAGYFPTMYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDLSIWNSMLKLYTGIEDFK 831 (909)
Q Consensus 752 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 831 (909)
.+. ..+..... . +......+...+|+..|+++++. -|++. -..
T Consensus 85 ~g~----------~~~~~~~~------~------~~~~~D~~~~~~A~~~~~~li~~--yP~S~-------------y~~ 127 (203)
T PF13525_consen 85 LGL----------SYYKQIPG------I------LRSDRDQTSTRKAIEEFEELIKR--YPNSE-------------YAE 127 (203)
T ss_dssp HHH----------HHHHHHHH------H------H-TT---HHHHHHHHHHHHHHHH---TTST-------------THH
T ss_pred HHH----------HHHHhCcc------c------hhcccChHHHHHHHHHHHHHHHH--CcCch-------------HHH
Confidence 000 00110000 0 00012233455667777776653 34442 223
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCC----hhhHHHHHHHHhccCCHHHHHH
Q 002549 832 KTIQVYQEIQEADLQPDEDSFNTLIIMYCRDCRPEEGLSLMHEMRKLGLEPK----LDTYKSLISAFGKQQQLEQAEE 905 (909)
Q Consensus 832 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~ 905 (909)
+|......+.+. - ...-..++..|.+.|.+..|..-++.+++. .|+ ......++.+|.+.|..+.|..
T Consensus 128 ~A~~~l~~l~~~---l-a~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~--yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 128 EAKKRLAELRNR---L-AEHELYIARFYYKRGKYKAAIIRFQYVIEN--YPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp HHHHHHHHHHHH---H-HHHHHHHHHHHHCTT-HHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHHHH---H-HHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 333333332220 0 022345788999999999999999999974 333 3456778899999999986653
No 207
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.15 E-value=0.0018 Score=49.58 Aligned_cols=55 Identities=24% Similarity=0.367 Sum_probs=43.9
Q ss_pred HHhhccCCHHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 002549 822 KLYTGIEDFKKTIQVYQEIQEADLQPDE-DSFNTLIIMYCRDCRPEEGLSLMHEMRKL 878 (909)
Q Consensus 822 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 878 (909)
..|...+++++|++.++++++ +.|+. ..+...+.++.+.|++++|.+.+++..+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALE--LDPDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHH--hCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 456777888888888888888 77854 67778888888888888888888888843
No 208
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.15 E-value=0.25 Score=48.90 Aligned_cols=222 Identities=16% Similarity=0.130 Sum_probs=110.8
Q ss_pred CChhhHHHHHHHHHHcCCCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhc-CCCCChHhHHHHHHHHHHcCCHHHHHH
Q 002549 617 DFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQR-CAPVDRKVWNALIKAYAASGCYERARA 695 (909)
Q Consensus 617 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~ 695 (909)
+....+...+......................+...+.+..+...+...... ..+.....+......+...+++..+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 3444444444444432111112344444555555555555555555554431 123334444444455555555555555
Q ss_pred HHHHHHHcCCCCCcccHHHHHHHHHhcCchhhHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 002549 696 VFNTMMRDGPSPTVDSINGLLQALIVDGRLNELYVVIQELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYHGMKAAGY 775 (909)
Q Consensus 696 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 775 (909)
.+.......+.+ ......... ..+...|+++.|...+.+......
T Consensus 117 ~~~~~~~~~~~~-~~~~~~~~~----------------------------------~~~~~~~~~~~a~~~~~~~~~~~~ 161 (291)
T COG0457 117 LLEKALALDPDP-DLAEALLAL----------------------------------GALYELGDYEEALELYEKALELDP 161 (291)
T ss_pred HHHHHHcCCCCc-chHHHHHHH----------------------------------HHHHHcCCHHHHHHHHHHHHhcCC
Confidence 555554433332 111111111 044555555555555555543110
Q ss_pred --CchHHHHHHHHHHHhccCchHHHHHHHHHHHHCCCCCC--HHhHHHHHHHhhccCCHHHHHHHHHHHHHcCCCCC-hh
Q 002549 776 --FPTMYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPD--LSIWNSMLKLYTGIEDFKKTIQVYQEIQEADLQPD-ED 850 (909)
Q Consensus 776 --~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~ 850 (909)
......+......+...++.+++...+.++.. ..|+ ...+..+...+...+++++|...+.+... ..|+ ..
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~ 237 (291)
T COG0457 162 ELNELAEALLALGALLEALGRYEEALELLEKALK--LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALE--LDPDNAE 237 (291)
T ss_pred CccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh--hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHh--hCcccHH
Confidence 01222233333335556666777777766665 2333 45566666666666777777777777776 5554 34
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHH
Q 002549 851 SFNTLIIMYCRDCRPEEGLSLMHEMRK 877 (909)
Q Consensus 851 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 877 (909)
.+..+...+...|.++++...+.+..+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 238 ALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred HHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555555555555667777777766664
No 209
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.14 E-value=0.0013 Score=49.37 Aligned_cols=64 Identities=22% Similarity=0.366 Sum_probs=46.9
Q ss_pred HhcCChhHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChHHHHHHH
Q 002549 91 GKANQENLAVETFMRAESAVDDTVQVYNAMMGIYARNGRFQKVQELLDLMRKRGCEPDLVSFNTLI 156 (909)
Q Consensus 91 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll 156 (909)
.+.|+++.|.+.|.++....|.+..++..+..+|.+.|++++|..+++++... .|+...|..++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l~ 65 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQLL 65 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHHH
Confidence 45677888888888877777778888888888888888888888888887766 45544444443
No 210
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.12 E-value=0.012 Score=59.10 Aligned_cols=128 Identities=16% Similarity=0.128 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 002549 223 TYNAMISVYGRCGLFEKAEQLFKELESKGFFPDAVTYNSLLYAFAR-EGNVEKVKEISENMLKMGFGKDEMTYNTIIHMY 301 (909)
Q Consensus 223 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 301 (909)
+|..+++..-+.+..+.|..+|.+..+.+. .+...|......-.. .++.+.|.++|+...+. ++.+...|...++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 455555555555555555555555553321 122223222222112 34444455555555543 234455555555555
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002549 302 GKQGQHDVALQLYRDMKLSGRNPDVV----TYTVLIDSLGKANKISEAANVMSEMLD 354 (909)
Q Consensus 302 ~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~~~~ 354 (909)
.+.|+.+.|..+|++.... .|... .|...+..-.+.|+.+.+.++..++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~--l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS--LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT--SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh--cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5555555555555555443 12222 444444444444444444444444443
No 211
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.12 E-value=0.003 Score=64.85 Aligned_cols=97 Identities=19% Similarity=0.030 Sum_probs=64.2
Q ss_pred hHHHHHHHHHHHhccCchHHHHHHHHHHHHCCCCCCHH----hHHHHHHHhhccCCHHHHHHHHHHHHHcCCCCChhhHH
Q 002549 778 TMYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDLS----IWNSMLKLYTGIEDFKKTIQVYQEIQEADLQPDEDSFN 853 (909)
Q Consensus 778 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 853 (909)
+...++.+..+|.+.|++++|+..|+++++ +.|+.. +|..+..+|...|+.++|++.++++++ +.+. .|.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALe--L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe--lsn~--~f~ 147 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALE--LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR--DYNL--KFS 147 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hcch--hHH
Confidence 567788888888888888888888888887 567653 478888888888888888888888888 3211 121
Q ss_pred HHHH--HHHhcCChhhHHHHHHHHHHcCC
Q 002549 854 TLII--MYCRDCRPEEGLSLMHEMRKLGL 880 (909)
Q Consensus 854 ~l~~--~~~~~g~~~~A~~~~~~~~~~~~ 880 (909)
.+.. .+....+..+..++++.+.+.|.
T Consensus 148 ~i~~DpdL~plR~~pef~eLlee~rk~G~ 176 (453)
T PLN03098 148 TILNDPDLAPFRASPEFKELQEEARKGGE 176 (453)
T ss_pred HHHhCcchhhhcccHHHHHHHHHHHHhCC
Confidence 1111 11222334456666666666443
No 212
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.09 E-value=0.35 Score=47.75 Aligned_cols=228 Identities=14% Similarity=0.089 Sum_probs=150.0
Q ss_pred cccHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCCchHHHHHHHHhhhcCChHHHH
Q 002549 581 NERFAEASQVFSDMRFYNIEP-SEDLYRSMVVAYCKMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAE 659 (909)
Q Consensus 581 ~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 659 (909)
.+....+...+.......... ...........+...+....+...+.........+.....+...+..+...+++..+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 356666777777665533221 3567777888888999999999988887653245666778888899999999999999
Q ss_pred HHHHHHHhcCCCCChHhHHHHHH-HHHHcCCHHHHHHHHHHHHHcCCC--CCcccHHHHHHHHHhcCchhhHHHHHHHHH
Q 002549 660 SLVGCLRQRCAPVDRKVWNALIK-AYAASGCYERARAVFNTMMRDGPS--PTVDSINGLLQALIVDGRLNELYVVIQELQ 736 (909)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 736 (909)
+.+......... +......... ++...|+++.|...+.++....+. .....+.....
T Consensus 116 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~------------------- 175 (291)
T COG0457 116 ELLEKALALDPD-PDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGA------------------- 175 (291)
T ss_pred HHHHHHHcCCCC-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhh-------------------
Confidence 999999875322 2233333344 788999999999999999663321 11111111111
Q ss_pred hCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccCchHHHHHHHHHHHHCCCCCC-HH
Q 002549 737 DMDFKISKSSILLMLDAFARSGNIFEVKKIYHGMKAAGYFPTMYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPD-LS 815 (909)
Q Consensus 737 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~ 815 (909)
.+...++.+.+...+..............+..+...+...+.+++|...+..... ..|+ ..
T Consensus 176 ----------------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~ 237 (291)
T COG0457 176 ----------------LLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALE--LDPDNAE 237 (291)
T ss_pred ----------------HHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHh--hCcccHH
Confidence 1444556666666666665532111345566666777777778888888888776 3444 34
Q ss_pred hHHHHHHHhhccCCHHHHHHHHHHHHHcCCCCC
Q 002549 816 IWNSMLKLYTGIEDFKKTIQVYQEIQEADLQPD 848 (909)
Q Consensus 816 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 848 (909)
.+..+...+...+..+++...+.+..+ ..|+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 268 (291)
T COG0457 238 ALYNLALLLLELGRYEEALEALEKALE--LDPD 268 (291)
T ss_pred HHhhHHHHHHHcCCHHHHHHHHHHHHH--hCcc
Confidence 455555555556678888888888887 5665
No 213
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.07 E-value=0.61 Score=50.20 Aligned_cols=86 Identities=16% Similarity=0.145 Sum_probs=45.2
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-CCCCC--------CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCC
Q 002549 358 KPTLRTYSALICGYAKAGNRLEAEKTFYCMRR-SGIRP--------DHLAYSVMLDIFLRFNETNKAMMLYQEMVSNGFT 428 (909)
Q Consensus 358 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~--------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 428 (909)
.|....|..+.......-.++.|+..|-+... .|++. +...-.+=+.+| -|++++|.++|-+|-.+.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drrD-- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRRD-- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchhh--
Confidence 46667777777666666667777766655543 22211 111111112222 377888888777765431
Q ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHH
Q 002549 429 PDQALYEIMIGVLGRENKGEEIRKVV 454 (909)
Q Consensus 429 ~~~~~~~~ll~~~~~~g~~~~a~~~~ 454 (909)
..+..+.+.|++-.+.+++
T Consensus 765 -------LAielr~klgDwfrV~qL~ 783 (1189)
T KOG2041|consen 765 -------LAIELRKKLGDWFRVYQLI 783 (1189)
T ss_pred -------hhHHHHHhhhhHHHHHHHH
Confidence 1233445555555555444
No 214
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.03 E-value=0.19 Score=46.69 Aligned_cols=207 Identities=14% Similarity=0.183 Sum_probs=107.9
Q ss_pred chHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHH
Q 002549 639 LSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQA 718 (909)
Q Consensus 639 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 718 (909)
.+.|...+..|...+++++|...+.++.+. .+.+...|.+ ..-++.|.-+.+++.+. .--+..++--...
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfhA-------AKayEqaamLake~~kl--sEvvdl~eKAs~l 100 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFHA-------AKAYEQAAMLAKELSKL--SEVVDLYEKASEL 100 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHHH-------HHHHHHHHHHHHHHHHh--HHHHHHHHHHHHH
Confidence 334445555566666666666655555432 2222222221 11233333343333321 1012223333444
Q ss_pred HHhcCchhhHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---C--CCchHHHHHHHHHHHhccC
Q 002549 719 LIVDGRLNELYVVIQELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYHGMKAA---G--YFPTMYLYRVMSGLFCKGK 793 (909)
Q Consensus 719 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~--~~p~~~~~~~l~~~~~~~g 793 (909)
|.+.|.++.|...+++.-+ ....-++++|+++|++...- + ..-....+......|.+..
T Consensus 101 Y~E~GspdtAAmaleKAak----------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~ 164 (308)
T KOG1585|consen 101 YVECGSPDTAAMALEKAAK----------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLE 164 (308)
T ss_pred HHHhCCcchHHHHHHHHHH----------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhH
Confidence 5555555555555444322 22345677777777776541 1 1123456667777788888
Q ss_pred chHHHHHHHHHHH----HCCCCCCH-HhHHHHHHHhhccCCHHHHHHHHHHHHHcC--CCC-ChhhHHHHHHHHHhcCCh
Q 002549 794 RVRDVEAMVSEMK----EAGFKPDL-SIWNSMLKLYTGIEDFKKTIQVYQEIQEAD--LQP-DEDSFNTLIIMYCRDCRP 865 (909)
Q Consensus 794 ~~~~A~~~~~~~~----~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~p-~~~~~~~l~~~~~~~g~~ 865 (909)
++++|-..+.+-. +..-.|+. ..+.+.+-.|....++..|...++.--+.+ ..| +..+..+|+.+|- .|+.
T Consensus 165 kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-~gD~ 243 (308)
T KOG1585|consen 165 KFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-EGDI 243 (308)
T ss_pred HhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-cCCH
Confidence 8888766655432 11112333 235555666667778899988888866621 112 3466667777765 6776
Q ss_pred hhHHHHH
Q 002549 866 EEGLSLM 872 (909)
Q Consensus 866 ~~A~~~~ 872 (909)
+++.+++
T Consensus 244 E~~~kvl 250 (308)
T KOG1585|consen 244 EEIKKVL 250 (308)
T ss_pred HHHHHHH
Confidence 7665554
No 215
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.01 E-value=0.013 Score=53.46 Aligned_cols=104 Identities=18% Similarity=0.310 Sum_probs=67.7
Q ss_pred CCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHH
Q 002549 254 PDAVTYNSLLYAFAR-----EGNVEKVKEISENMLKMGFGKDEMTYNTIIHMYGKQGQHDVALQLYRDMKLSGRNPDVVT 328 (909)
Q Consensus 254 ~~~~~~~~ll~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 328 (909)
.+..+|..++..|.+ .|.++-....+..|.+.|+..|..+|+.|++.+=+ |.+- -..+|+.+--
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F~--------- 113 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEFM--------- 113 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHhc---------
Confidence 366777777777763 46777777778888888888888888888887643 2221 1111111110
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 002549 329 YTVLIDSLGKANKISEAANVMSEMLDASVKPTLRTYSALICGYAKAGN 376 (909)
Q Consensus 329 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 376 (909)
-.-.+-+-|++++++|...|+.||..++..+++.+.+.+.
T Consensus 114 --------hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 --------HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred --------cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 0123445677888888888888888888888887766554
No 216
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.98 E-value=0.012 Score=57.32 Aligned_cols=231 Identities=8% Similarity=-0.010 Sum_probs=114.9
Q ss_pred HHHhhhcCChHHHHHHHHHHHhcCCC--CChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCC---cccHHHHHHH
Q 002549 646 IDAYGRLKLWQKAESLVGCLRQRCAP--VDRKVWNALIKAYAASGCYERARAVFNTMMRDG--PSPT---VDSINGLLQA 718 (909)
Q Consensus 646 ~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~---~~~~~~l~~~ 718 (909)
+.-+....+.+.|+....+.+.+-.. ....++..+..+.+..|.+++++..--.-++.. .+.+ ..+|..+.++
T Consensus 13 g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~ 92 (518)
T KOG1941|consen 13 GLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARS 92 (518)
T ss_pred HHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666777777777666543110 112344555666666777666554433222211 1101 1223334444
Q ss_pred HHhcCchhhHHHHHHHHHhC-CCCc---cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CCc--hHHHHHHHHHHH
Q 002549 719 LIVDGRLNELYVVIQELQDM-DFKI---SKSSILLMLDAFARSGNIFEVKKIYHGMKAAG---YFP--TMYLYRVMSGLF 789 (909)
Q Consensus 719 ~~~~g~~~~A~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~p--~~~~~~~l~~~~ 789 (909)
+.+.-++.+++.+-..-... |..| ......++..++.-.+-++++++.|+...+.- -.| ...++..|...|
T Consensus 93 ~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf 172 (518)
T KOG1941|consen 93 NEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLF 172 (518)
T ss_pred HHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHH
Confidence 44444444444444433322 2222 12333445555666666677777776666511 012 234566666677
Q ss_pred hccCchHHHHHHHHHHHHC--CCCCCHH--hH-----HHHHHHhhccCCHHHHHHHHHHHHH----cCCCCC-hhhHHHH
Q 002549 790 CKGKRVRDVEAMVSEMKEA--GFKPDLS--IW-----NSMLKLYTGIEDFKKTIQVYQEIQE----ADLQPD-EDSFNTL 855 (909)
Q Consensus 790 ~~~g~~~~A~~~~~~~~~~--~~~p~~~--~~-----~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p~-~~~~~~l 855 (909)
.+..++++|+-+..++.+- .+..+.+ .| ..+.-++...|.+-.|.+..+++.+ .|-.|- ......+
T Consensus 173 ~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~ 252 (518)
T KOG1941|consen 173 AQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCF 252 (518)
T ss_pred HHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 7777777776666665431 1221111 12 2233455666666666666666544 232331 2445566
Q ss_pred HHHHHhcCChhhHHHHHHHHH
Q 002549 856 IIMYCRDCRPEEGLSLMHEMR 876 (909)
Q Consensus 856 ~~~~~~~g~~~~A~~~~~~~~ 876 (909)
++.|-..|+.+.|+.-|+.+.
T Consensus 253 aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 253 ADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHhcccHhHHHHHHHHHH
Confidence 666666677666666666654
No 217
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.98 E-value=0.00096 Score=51.86 Aligned_cols=63 Identities=21% Similarity=0.425 Sum_probs=40.8
Q ss_pred HhHHHHHHHhhccCCHHHHHHHHHHHHHc--CCC---CC-hhhHHHHHHHHHhcCChhhHHHHHHHHHH
Q 002549 815 SIWNSMLKLYTGIEDFKKTIQVYQEIQEA--DLQ---PD-EDSFNTLIIMYCRDCRPEEGLSLMHEMRK 877 (909)
Q Consensus 815 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~---p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 877 (909)
.+++.++..|...|++++|+..|+++++. ... |+ ..++..++.++...|++++|++++++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 35666667777777777777777777652 011 12 24566777788888888888887777653
No 218
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=96.96 E-value=0.29 Score=44.60 Aligned_cols=97 Identities=19% Similarity=0.119 Sum_probs=70.9
Q ss_pred HHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHh
Q 002549 642 YVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQALIV 721 (909)
Q Consensus 642 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 721 (909)
+..-+..|-..|-+.-|+--|.+.+.. .|.-+.++|.|+--+...|+++.|.+.|+...+.+|.-+....| -..++.-
T Consensus 68 ~fERGvlYDSlGL~~LAR~DftQaLai-~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lN-Rgi~~YY 145 (297)
T COG4785 68 LFERGVLYDSLGLRALARNDFSQALAI-RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLN-RGIALYY 145 (297)
T ss_pred HHHhcchhhhhhHHHHHhhhhhhhhhc-CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhc-cceeeee
Confidence 334455677778888888888888776 46668899999999999999999999999999987763322222 2233445
Q ss_pred cCchhhHHHHHHHHHhCCC
Q 002549 722 DGRLNELYVVIQELQDMDF 740 (909)
Q Consensus 722 ~g~~~~A~~~~~~~~~~~~ 740 (909)
-|++.-|.+-+.+.-+.+.
T Consensus 146 ~gR~~LAq~d~~~fYQ~D~ 164 (297)
T COG4785 146 GGRYKLAQDDLLAFYQDDP 164 (297)
T ss_pred cCchHhhHHHHHHHHhcCC
Confidence 6888888887777766653
No 219
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.94 E-value=0.16 Score=51.88 Aligned_cols=82 Identities=13% Similarity=-0.017 Sum_probs=41.5
Q ss_pred hHHHHHHHHHHHHCCCCCCHHhHHHHHHHhhccCCHH----HHHHHH----HHHHHcC-CCC--ChhhHHHHHHHHHhcC
Q 002549 795 VRDVEAMVSEMKEAGFKPDLSIWNSMLKLYTGIEDFK----KTIQVY----QEIQEAD-LQP--DEDSFNTLIIMYCRDC 863 (909)
Q Consensus 795 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~----~A~~~~----~~~~~~~-~~p--~~~~~~~l~~~~~~~g 863 (909)
.++|++.|.+.-+ ..||..+-.+++..+...|... +..++. ..+.++| ..+ |-..+.++..+..-.|
T Consensus 242 ldkAi~~Y~kgFe--~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~ 319 (374)
T PF13281_consen 242 LDKAIEWYRKGFE--IEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAG 319 (374)
T ss_pred HHHHHHHHHHHHc--CCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcC
Confidence 5667777766655 3455544333333333333211 112222 1122222 222 2244456667777777
Q ss_pred ChhhHHHHHHHHHHc
Q 002549 864 RPEEGLSLMHEMRKL 878 (909)
Q Consensus 864 ~~~~A~~~~~~~~~~ 878 (909)
++++|.+.+++|.+.
T Consensus 320 d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 320 DYEKAIQAAEKAFKL 334 (374)
T ss_pred CHHHHHHHHHHHhhc
Confidence 778888877777754
No 220
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.93 E-value=0.0035 Score=47.92 Aligned_cols=59 Identities=17% Similarity=0.256 Sum_probs=37.0
Q ss_pred HHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 002549 647 DAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPS 706 (909)
Q Consensus 647 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 706 (909)
..|...+++++|.++++.+++. .|.++..|...+.++...|++++|.+.|++.++.+|.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~ 61 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALEL-DPDDPELWLQRARCLFQLGRYEEALEDLERALELSPD 61 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHh-CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCC
Confidence 3455666666666666666655 4556666666666666666666666666666665443
No 221
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.92 E-value=0.98 Score=50.09 Aligned_cols=177 Identities=14% Similarity=0.130 Sum_probs=93.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 002549 259 YNSLLYAFAREGNVEKVKEISENMLKMGFGKD--EMTYNTIIHMYGKQGQHDVALQLYRDMKLSGRNPDVVTYTVLIDSL 336 (909)
Q Consensus 259 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 336 (909)
...-|..+++...++.|..+... .+..++ ........+-+.+.|++++|...|-+-...- .| ..+|.-|
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~---~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l-e~-----s~Vi~kf 407 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKS---QHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFL-EP-----SEVIKKF 407 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccC-Ch-----HHHHHHh
Confidence 44556666666667766665543 222222 1122233344456777777777766654321 12 2234555
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHcCCHhHH
Q 002549 337 GKANKISEAANVMSEMLDASVKPTLRTYSALICGYAKAGNRLEAEKTFYCMRRSGI-RPDHLAYSVMLDIFLRFNETNKA 415 (909)
Q Consensus 337 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 415 (909)
....+..+-..+++.+.+.|.. +...-..|+.+|.+.++.++-.+..+... .|. ..|. ...+..+.+.+-.++|
T Consensus 408 Ldaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~fd~---e~al~Ilr~snyl~~a 482 (933)
T KOG2114|consen 408 LDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFDV---ETALEILRKSNYLDEA 482 (933)
T ss_pred cCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-CcceeeeH---HHHHHHHHHhChHHHH
Confidence 5666666666777777777654 44445667777777777777666655443 221 1122 2344555555666666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 002549 416 MMLYQEMVSNGFTPDQALYEIMIGVLGRENKGEEIRKVVRDM 457 (909)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 457 (909)
..+-..... .......+ +...+++++|.+++..+
T Consensus 483 ~~LA~k~~~-----he~vl~il---le~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 483 ELLATKFKK-----HEWVLDIL---LEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHhcc-----CHHHHHHH---HHHhcCHHHHHHHHhcC
Confidence 555444422 22222222 33446677777766543
No 222
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.92 E-value=0.056 Score=48.26 Aligned_cols=115 Identities=23% Similarity=0.388 Sum_probs=70.7
Q ss_pred HHhcCCHHHHHHHHHHHHh--cC-CCchHHHHHHHHHHHhccCchHHHHHHHHHHHHCCCCCCHHhHHHHHHHhhccCCH
Q 002549 754 FARSGNIFEVKKIYHGMKA--AG-YFPTMYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDLSIWNSMLKLYTGIEDF 830 (909)
Q Consensus 754 ~~~~g~~~~a~~~~~~~~~--~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 830 (909)
....|+.+.+...++++.. .| +-|+... ..........++... ..+...++..+...|++
T Consensus 16 ~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~----------~~W~~~~r~~l~~~~-------~~~~~~l~~~~~~~~~~ 78 (146)
T PF03704_consen 16 AARAGDPEEAIELLEEALALYRGDFLPDLDD----------EEWVEPERERLRELY-------LDALERLAEALLEAGDY 78 (146)
T ss_dssp HHHTT-HHHHHHHHHHHHTT--SSTTGGGTT----------STTHHHHHHHHHHHH-------HHHHHHHHHHHHHTT-H
T ss_pred HHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc----------cHHHHHHHHHHHHHH-------HHHHHHHHHHHHhccCH
Confidence 3456677777777777775 12 2223211 111222222222221 12345566677788999
Q ss_pred HHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCChhhHHHHHHHHHH-----cCCCCChhhH
Q 002549 831 KKTIQVYQEIQEADLQP-DEDSFNTLIIMYCRDCRPEEGLSLMHEMRK-----LGLEPKLDTY 887 (909)
Q Consensus 831 ~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~~ 887 (909)
++|+..+++++. ..| |...+..++.+|...|+..+|.+.|+++.+ .|+.|++.+-
T Consensus 79 ~~a~~~~~~~l~--~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 79 EEALRLLQRALA--LDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHH--HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 999999999999 888 457888999999999999999999988865 5889987664
No 223
>PRK11906 transcriptional regulator; Provisional
Probab=96.85 E-value=0.049 Score=56.34 Aligned_cols=113 Identities=14% Similarity=0.107 Sum_probs=68.0
Q ss_pred ChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCchhhHHHHHH
Q 002549 654 LWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQALIVDGRLNELYVVIQ 733 (909)
Q Consensus 654 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 733 (909)
...+|.+..+++.+. .+.|+.+...++.+....++++.|...|+++...+|+ ...+|......+.-.|+.++|.+.++
T Consensus 319 ~~~~a~~~A~rAvel-d~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~ 396 (458)
T PRK11906 319 AAQKALELLDYVSDI-TTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICID 396 (458)
T ss_pred HHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 344566666666666 4567777777777777777777777788777776665 55666666666667777777777777
Q ss_pred HHHhCCCCcc-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 002549 734 ELQDMDFKIS-KSSILLMLDAFARSGNIFEVKKIYHG 769 (909)
Q Consensus 734 ~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~ 769 (909)
+..+....-- .......++.|+.. -+++|+++|-+
T Consensus 397 ~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 432 (458)
T PRK11906 397 KSLQLEPRRRKAVVIKECVDMYVPN-PLKNNIKLYYK 432 (458)
T ss_pred HHhccCchhhHHHHHHHHHHHHcCC-chhhhHHHHhh
Confidence 7555432111 22222233344433 34555555443
No 224
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.82 E-value=0.022 Score=57.27 Aligned_cols=95 Identities=12% Similarity=0.147 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHhccCchHHHHHHHHHHHHCCCCC-CHHhHHHHHHHhhccCCHHHHHHHHHHHHHcCCCCChhhHH-HHH
Q 002549 779 MYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKP-DLSIWNSMLKLYTGIEDFKKTIQVYQEIQEADLQPDEDSFN-TLI 856 (909)
Q Consensus 779 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~-~l~ 856 (909)
..+++.+..++.+.+++.+|++..++.++ +.| |.-...--+.+|...|+++.|+..|+++++ +.|++.... .++
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe--~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k--~~P~Nka~~~el~ 332 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLE--LDPNNVKALYRRGQALLALGEYDLARDDFQKALK--LEPSNKAARAELI 332 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHh--cCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHH--hCCCcHHHHHHHH
Confidence 34677888899999999999999999998 445 445666678889999999999999999999 999875444 555
Q ss_pred HHHHhcCCh-hhHHHHHHHHHH
Q 002549 857 IMYCRDCRP-EEGLSLMHEMRK 877 (909)
Q Consensus 857 ~~~~~~g~~-~~A~~~~~~~~~ 877 (909)
.+--+...+ +...++|..|..
T Consensus 333 ~l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 333 KLKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 555444444 445788888875
No 225
>PRK11906 transcriptional regulator; Provisional
Probab=96.82 E-value=0.05 Score=56.31 Aligned_cols=160 Identities=9% Similarity=0.087 Sum_probs=97.3
Q ss_pred ccH--HHHHHHHHhc-----CchhhHHHHHHHHHhC-CCCcc-HHHHHHHHHHHHh---------cCCHHHHHHHHHHHH
Q 002549 710 DSI--NGLLQALIVD-----GRLNELYVVIQELQDM-DFKIS-KSSILLMLDAFAR---------SGNIFEVKKIYHGMK 771 (909)
Q Consensus 710 ~~~--~~l~~~~~~~-----g~~~~A~~~~~~~~~~-~~~~~-~~~~~~l~~~~~~---------~g~~~~a~~~~~~~~ 771 (909)
..| ...+++.... .....|+.+|.+.... ...|+ ...|..+..++.. ..+..+|.++.++..
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 455 5555554432 2346677888888722 33444 3344444433321 123455666666666
Q ss_pred hcCCCchHHHHHHHHHHHhccCchHHHHHHHHHHHHCCCCCCH-HhHHHHHHHhhccCCHHHHHHHHHHHHHcCCCCCh-
Q 002549 772 AAGYFPTMYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDL-SIWNSMLKLYTGIEDFKKTIQVYQEIQEADLQPDE- 849 (909)
Q Consensus 772 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~- 849 (909)
+.+ .-|......++.++.-.|+++.|..+|+++.. +.||. .+|......+...|+.++|.+.+++.++ ++|..
T Consensus 332 eld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~--L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr--LsP~~~ 406 (458)
T PRK11906 332 DIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKI--HSTDIASLYYYRALVHFHNEKIEEARICIDKSLQ--LEPRRR 406 (458)
T ss_pred hcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhh--cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--cCchhh
Confidence 644 23566666677767777778888888888876 56776 5666666677777888888888888888 78843
Q ss_pred --hhHHHHHHHHHhcCChhhHHHHHHHH
Q 002549 850 --DSFNTLIIMYCRDCRPEEGLSLMHEM 875 (909)
Q Consensus 850 --~~~~~l~~~~~~~g~~~~A~~~~~~~ 875 (909)
......++.|+.. ..++|+++|-+-
T Consensus 407 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 433 (458)
T PRK11906 407 KAVVIKECVDMYVPN-PLKNNIKLYYKE 433 (458)
T ss_pred HHHHHHHHHHHHcCC-chhhhHHHHhhc
Confidence 2233344466654 347777776553
No 226
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.81 E-value=0.00095 Score=51.90 Aligned_cols=60 Identities=22% Similarity=0.326 Sum_probs=49.7
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHHc----C-CCCC-hhhHHHHHHHHhccCCHHHHHHhhcC
Q 002549 850 DSFNTLIIMYCRDCRPEEGLSLMHEMRKL----G-LEPK-LDTYKSLISAFGKQQQLEQAEELLKS 909 (909)
Q Consensus 850 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~-~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 909 (909)
.++..++.+|...|++++|++++++..+. | ..|+ ..++..++..+...|++++|.+++++
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~ 71 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQK 71 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 67889999999999999999999999962 2 1222 55788999999999999999998863
No 227
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.74 E-value=0.011 Score=60.77 Aligned_cols=64 Identities=5% Similarity=-0.027 Sum_probs=52.1
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchH----HHHHHHHHHHhccCchHHHHHHHHHHHH
Q 002549 742 ISKSSILLMLDAFARSGNIFEVKKIYHGMKAAGYFPTM----YLYRVMSGLFCKGKRVRDVEAMVSEMKE 807 (909)
Q Consensus 742 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 807 (909)
.+...+..+..+|.+.|++++|+..|++.++. .|+. ..|..+..+|.+.|++++|++.++++++
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33567777888899999999999999998874 3553 3588888899999999999999999887
No 228
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.72 E-value=0.86 Score=46.54 Aligned_cols=94 Identities=13% Similarity=0.194 Sum_probs=68.3
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 002549 311 LQLYRDMKLSGRNPDVVTYTVLIDSLGKANKISEAANVMSEMLDASVKPTLRTYSALICGYAKAGNRLEAEKTFYCMRRS 390 (909)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 390 (909)
+++-+++++. +.|..+|-.||.-|..+|.+++..+++++|... .+--..+|..-+.+-...+++...+.+|.+.+..
T Consensus 29 lrLRerIkdN--PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k 105 (660)
T COG5107 29 LRLRERIKDN--PTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKK 105 (660)
T ss_pred HHHHHHhhcC--chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhh
Confidence 3555666654 567788999999999999999999999998753 1223456777777777788899999999888875
Q ss_pred CCCCCHHHHHHHHHHHHHc
Q 002549 391 GIRPDHLAYSVMLDIFLRF 409 (909)
Q Consensus 391 ~~~~~~~~~~~l~~~~~~~ 409 (909)
.. +...|...+...-+.
T Consensus 106 ~l--~ldLW~lYl~YIRr~ 122 (660)
T COG5107 106 SL--NLDLWMLYLEYIRRV 122 (660)
T ss_pred hc--cHhHHHHHHHHHHhh
Confidence 43 466666666554443
No 229
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.71 E-value=0.14 Score=52.31 Aligned_cols=157 Identities=13% Similarity=0.079 Sum_probs=94.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHhc---cCchHHHHHHHHHHHHCCCCCCHHhHHHHHHH
Q 002549 750 MLDAFARSGNIFEVKKIYHGMKAA---GYFPTMYLYRVMSGLFCK---GKRVRDVEAMVSEMKEAGFKPDLSIWNSMLKL 823 (909)
Q Consensus 750 l~~~~~~~g~~~~a~~~~~~~~~~---~~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 823 (909)
++-.|....+++.-.++.+.+... .+.-+..+--.++-++-+ .|+.++|++++..++...-.++..++..++..
T Consensus 147 lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRI 226 (374)
T PF13281_consen 147 LLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRI 226 (374)
T ss_pred HHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 333455666666666666666542 111122333344445555 67777777777665444445566666666665
Q ss_pred hhc---------cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHH--------HcC---CCCC
Q 002549 824 YTG---------IEDFKKTIQVYQEIQEADLQPDEDSFNTLIIMYCRDCRPEEGLSLMHEMR--------KLG---LEPK 883 (909)
Q Consensus 824 ~~~---------~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~---~~p~ 883 (909)
|.. ...+++|+..|.+.-+ ++|+..+=.+++..+...|.-.+...-+++.. +.| -..+
T Consensus 227 yKD~~~~s~~~d~~~ldkAi~~Y~kgFe--~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~d 304 (374)
T PF13281_consen 227 YKDLFLESNFTDRESLDKAIEWYRKGFE--IEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQD 304 (374)
T ss_pred HHHHHHHcCccchHHHHHHHHHHHHHHc--CCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccccc
Confidence 532 1248999999999999 78877655566666666665333322111111 222 2334
Q ss_pred hhhHHHHHHHHhccCCHHHHHHhhc
Q 002549 884 LDTYKSLISAFGKQQQLEQAEELLK 908 (909)
Q Consensus 884 ~~~~~~l~~~~~~~g~~~~A~~~~~ 908 (909)
-..+.++..+..-.|+.++|.+.++
T Consensus 305 YWd~ATl~Ea~vL~~d~~ka~~a~e 329 (374)
T PF13281_consen 305 YWDVATLLEASVLAGDYEKAIQAAE 329 (374)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5566788999999999999988765
No 230
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.65 E-value=0.021 Score=55.20 Aligned_cols=161 Identities=11% Similarity=0.020 Sum_probs=113.3
Q ss_pred HhcCchhhHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHhccCchH
Q 002549 720 IVDGRLNELYVVIQELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYHGMKAA---GYFPTMYLYRVMSGLFCKGKRVR 796 (909)
Q Consensus 720 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~ 796 (909)
...|+..+|...++++.+.- +.|-..+.-.-++|.-.|+.+.-...++++... +++...++-..+..++..+|-++
T Consensus 114 ~~~g~~h~a~~~wdklL~d~-PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDY-PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred hccccccHHHHHHHHHHHhC-chhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 35788888888888887654 555566666677888889888888888888752 43334555566777788999999
Q ss_pred HHHHHHHHHHHCCCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHcCCCC----ChhhHHHHHHHHHhcCChhhHHHHH
Q 002549 797 DVEAMVSEMKEAGFKPDLSIWNSMLKLYTGIEDFKKTIQVYQEIQEADLQP----DEDSFNTLIIMYCRDCRPEEGLSLM 872 (909)
Q Consensus 797 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~ 872 (909)
+|++.-++..+-+ +.|...-.+....+-..|+..++.++.++-... .+- -+..|-+.+-.+...+.++.|+++|
T Consensus 193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~-Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDD-WRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccc-hhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 9999998888732 335677777777888888999998887665431 111 1234556666777778899999998
Q ss_pred HHHHHcCCCCC
Q 002549 873 HEMRKLGLEPK 883 (909)
Q Consensus 873 ~~~~~~~~~p~ 883 (909)
++-.-..+..+
T Consensus 271 D~ei~k~l~k~ 281 (491)
T KOG2610|consen 271 DREIWKRLEKD 281 (491)
T ss_pred HHHHHHHhhcc
Confidence 76554334444
No 231
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.63 E-value=0.66 Score=44.17 Aligned_cols=81 Identities=20% Similarity=0.132 Sum_probs=53.3
Q ss_pred chHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCC---hHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHH
Q 002549 639 LSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVD---RKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGL 715 (909)
Q Consensus 639 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 715 (909)
+..+..-+......|+|++|.+.|+.+... .|-+ ..+.-.++.++-+.+++++|+..+++-++..|......|..-
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~-~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSR-HPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 344455555666778888888888877654 3433 344445566677778888888888888887766555556665
Q ss_pred HHHHH
Q 002549 716 LQALI 720 (909)
Q Consensus 716 ~~~~~ 720 (909)
+.+++
T Consensus 113 lkgLs 117 (254)
T COG4105 113 LKGLS 117 (254)
T ss_pred HHHHH
Confidence 55554
No 232
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.57 E-value=0.46 Score=46.92 Aligned_cols=56 Identities=7% Similarity=-0.008 Sum_probs=30.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh----cCCCc-hHHHHHHHHHHHhccCchHHHHHHHHHH
Q 002549 750 MLDAFARSGNIFEVKKIYHGMKA----AGYFP-TMYLYRVMSGLFCKGKRVRDVEAMVSEM 805 (909)
Q Consensus 750 l~~~~~~~g~~~~a~~~~~~~~~----~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 805 (909)
+.-++...|.+.+|.+..++..+ .|-.| -....-++.+.|...|+.|.|..-++++
T Consensus 212 maValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 212 MAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 44455566666666666665544 23222 1223345666666667666666655554
No 233
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.55 E-value=0.094 Score=52.91 Aligned_cols=94 Identities=13% Similarity=0.073 Sum_probs=50.4
Q ss_pred HHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHH
Q 002549 606 YRSMVVAYCKMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYA 685 (909)
Q Consensus 606 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 685 (909)
+..+..++.+.+++..|+...+.++. +.|++..+++.-+.++...|+++.|+..|+++++. .|.|-.+-+.++.+-.
T Consensus 260 ~lNlA~c~lKl~~~~~Ai~~c~kvLe--~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~-~P~Nka~~~el~~l~~ 336 (397)
T KOG0543|consen 260 HLNLAACYLKLKEYKEAIESCNKVLE--LDPNNVKALYRRGQALLALGEYDLARDDFQKALKL-EPSNKAARAELIKLKQ 336 (397)
T ss_pred hhHHHHHHHhhhhHHHHHHHHHHHHh--cCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHH
Confidence 34444455555666666666665555 55666666666666666666666666666666554 3444444444444433
Q ss_pred HcCC-HHHHHHHHHHHHH
Q 002549 686 ASGC-YERARAVFNTMMR 702 (909)
Q Consensus 686 ~~g~-~~~A~~~~~~~~~ 702 (909)
+... .+...++|..|..
T Consensus 337 k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 337 KIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 3332 2233555555544
No 234
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.50 E-value=0.24 Score=51.45 Aligned_cols=101 Identities=11% Similarity=0.146 Sum_probs=62.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhccCchHHHHHHHHHHHHCCCCCCHH--hHHHHHHHh
Q 002549 748 LLMLDAFARSGNIFEVKKIYHGMKAAGYF-PTMYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDLS--IWNSMLKLY 824 (909)
Q Consensus 748 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~--~~~~l~~~~ 824 (909)
..+..++.+.|+.++|.+.+.++.+.... .+..+.-.|+..|...+++.++..++.+..+.. -|++. .|+..+-..
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~-lpkSAti~YTaALLka 341 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDIS-LPKSATICYTAALLKA 341 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcccc-CCchHHHHHHHHHHHH
Confidence 34666667778888888888888753211 233455677788888888888888888775432 34443 344433322
Q ss_pred hccCC---------------HHHHHHHHHHHHHcCCCCChhh
Q 002549 825 TGIED---------------FKKTIQVYQEIQEADLQPDEDS 851 (909)
Q Consensus 825 ~~~g~---------------~~~A~~~~~~~~~~~~~p~~~~ 851 (909)
+..++ -..|.+.++++++ .+|...-
T Consensus 342 Rav~d~fs~e~a~rRGls~ae~~aveAi~RAve--fNPHVp~ 381 (539)
T PF04184_consen 342 RAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVE--FNPHVPK 381 (539)
T ss_pred HhhccccCchhhhhcCCChhHHHHHHHHHHHHH--hCCCCch
Confidence 22222 2347788999988 7775433
No 235
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.46 E-value=0.033 Score=45.78 Aligned_cols=89 Identities=12% Similarity=0.115 Sum_probs=65.7
Q ss_pred HHhccCchHHHHHHHHHHHHCCCCC-CHHhHHHHHHHhhccCCHHHHHHHHHHHHHcCCCCC-----hhhHHHHHHHHHh
Q 002549 788 LFCKGKRVRDVEAMVSEMKEAGFKP-DLSIWNSMLKLYTGIEDFKKTIQVYQEIQEADLQPD-----EDSFNTLIIMYCR 861 (909)
Q Consensus 788 ~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~ 861 (909)
++...|+++.|++.|.+.+. +-| ....||.-..++.-+|+.++|++-++++++ +..+ ..+|..-+..|-.
T Consensus 52 alaE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~Ale--Lag~~trtacqa~vQRg~lyRl 127 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALE--LAGDQTRTACQAFVQRGLLYRL 127 (175)
T ss_pred HHHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHH--hcCccchHHHHHHHHHHHHHHH
Confidence 45567888888888888876 344 446788888888888888888888888887 3322 2456666777777
Q ss_pred cCChhhHHHHHHHHHHcCC
Q 002549 862 DCRPEEGLSLMHEMRKLGL 880 (909)
Q Consensus 862 ~g~~~~A~~~~~~~~~~~~ 880 (909)
.|+.+.|..-|+...+.|.
T Consensus 128 ~g~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 128 LGNDDAARADFEAAAQLGS 146 (175)
T ss_pred hCchHHHHHhHHHHHHhCC
Confidence 8888888888888877654
No 236
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.44 E-value=0.45 Score=44.33 Aligned_cols=203 Identities=13% Similarity=0.113 Sum_probs=112.8
Q ss_pred HHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHH
Q 002549 604 DLYRSMVVAYCKMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKA 683 (909)
Q Consensus 604 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 683 (909)
..|.....+|....++++|...+.++.+. ..++. ..+-..+.++.|.-+.+++.+. +.-...++-....
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~--yEnnr-------slfhAAKayEqaamLake~~kl--sEvvdl~eKAs~l 100 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKG--YENNR-------SLFHAAKAYEQAAMLAKELSKL--SEVVDLYEKASEL 100 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHH--HHhcc-------cHHHHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHH
Confidence 34566666788888899888887777641 01111 1122233445555555555442 2234556667778
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCchhhHHHHHHHHHhC---CC--CccHHHHHHHHHHHHhcC
Q 002549 684 YAASGCYERARAVFNTMMRDGPSPTVDSINGLLQALIVDGRLNELYVVIQELQDM---DF--KISKSSILLMLDAFARSG 758 (909)
Q Consensus 684 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~--~~~~~~~~~l~~~~~~~g 758 (909)
|..+|..+.|...++++-+. .+.-++++|++++++.... +- +-....+..+...+.+..
T Consensus 101 Y~E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~ 164 (308)
T KOG1585|consen 101 YVECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLE 164 (308)
T ss_pred HHHhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhH
Confidence 88899988888888887542 1233456666666655322 10 111223444667778888
Q ss_pred CHHHHHHHHHHHHh----cCCCchH-HHHHHHHHHHhccCchHHHHHHHHHHHHCC--CCC-CHHhHHHHHHHhhccCCH
Q 002549 759 NIFEVKKIYHGMKA----AGYFPTM-YLYRVMSGLFCKGKRVRDVEAMVSEMKEAG--FKP-DLSIWNSMLKLYTGIEDF 830 (909)
Q Consensus 759 ~~~~a~~~~~~~~~----~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~p-~~~~~~~l~~~~~~~g~~ 830 (909)
++++|-..+.+-.. ..--|+. ..+...|-.+.-..++-.|+..+++--+.+ +.| |..+...|+.+|- .|+.
T Consensus 165 kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-~gD~ 243 (308)
T KOG1585|consen 165 KFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-EGDI 243 (308)
T ss_pred HhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-cCCH
Confidence 88887777665532 1111222 223344444455567788888887744322 122 2345666666653 4566
Q ss_pred HHHH
Q 002549 831 KKTI 834 (909)
Q Consensus 831 ~~A~ 834 (909)
+++-
T Consensus 244 E~~~ 247 (308)
T KOG1585|consen 244 EEIK 247 (308)
T ss_pred HHHH
Confidence 6553
No 237
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.42 E-value=0.056 Score=48.26 Aligned_cols=71 Identities=21% Similarity=0.308 Sum_probs=49.4
Q ss_pred HhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCchhhHHHHHHHHH-----hCCCCccHHH
Q 002549 675 KVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQALIVDGRLNELYVVIQELQ-----DMDFKISKSS 746 (909)
Q Consensus 675 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~~ 746 (909)
.+...++..+...|++++|.....+++..+|. +...|..++.+|...|+..+|++.|+++. +.|+.|++.+
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 35556777778888999999999999888777 77788888888888888888888887764 2355555543
No 238
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.41 E-value=1.3 Score=45.01 Aligned_cols=109 Identities=17% Similarity=0.199 Sum_probs=60.1
Q ss_pred cHHHHHHHHHhcCchhhHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHh
Q 002549 711 SINGLLQALIVDGRLNELYVVIQELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYHGMKAAGYFPTMYLYRVMSGLFC 790 (909)
Q Consensus 711 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 790 (909)
+.+.-+.-+...|+...|.++-.++. -|+...|...+.+++..++|++-.++... . -++.-|...+..+.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s-k-----KsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS-K-----KSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC-C-----CCCCChHHHHHHHH
Confidence 44444555566666666555544432 35555666666677777777665554322 1 12344555666666
Q ss_pred ccCchHHHHHHHHHHHHCCCCCCHHhHHHHHHHhhccCCHHHHHHHHHH
Q 002549 791 KGKRVRDVEAMVSEMKEAGFKPDLSIWNSMLKLYTGIEDFKKTIQVYQE 839 (909)
Q Consensus 791 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 839 (909)
+.|+..+|..++.++ ++ ..-+..|.+.|++.+|.+..-+
T Consensus 249 ~~~~~~eA~~yI~k~-----~~-----~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI-----PD-----EERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HCCCHHHHHHHHHhC-----Ch-----HHHHHHHHHCCCHHHHHHHHHH
Confidence 667666666666552 11 2234455666666666665444
No 239
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.33 E-value=0.058 Score=44.40 Aligned_cols=93 Identities=18% Similarity=0.019 Sum_probs=59.4
Q ss_pred HHhhcCChhhHHHHHHHHHHcCCCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHH---HHHHHHHHcC
Q 002549 612 AYCKMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWN---ALIKAYAASG 688 (909)
Q Consensus 612 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~---~l~~~~~~~g 688 (909)
++...|+.+.|++.|.+++. +-|...++|+.-+.++.-+|+.++|++-++++++..-+....... .-+..|...|
T Consensus 52 alaE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 34556667777777776665 667777777777777777777777777777766553333332222 2334566667
Q ss_pred CHHHHHHHHHHHHHcCCC
Q 002549 689 CYERARAVFNTMMRDGPS 706 (909)
Q Consensus 689 ~~~~A~~~~~~~~~~~~~ 706 (909)
+-+.|..-|+.+.+.|.+
T Consensus 130 ~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLGSK 147 (175)
T ss_pred chHHHHHhHHHHHHhCCH
Confidence 777777777777766543
No 240
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.33 E-value=2 Score=46.15 Aligned_cols=177 Identities=9% Similarity=-0.023 Sum_probs=74.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhccCCcccchhhHHHHHHHHHhcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhc
Q 002549 537 AFIIMLCKAQKLDAALEEYSNAWGFGFFSKSKTMYESLIHSCEYNERFAEASQVFSDMRFYNIEPSEDLYRSMVVAYCKM 616 (909)
Q Consensus 537 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 616 (909)
..+....+.|+++...-+|++..-- +..-...|-..+.-....|+.+-|..++....+-.++-.+.+=..-...+-..
T Consensus 302 ~yLdf~i~~g~~~~~~~l~ercli~--cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~ 379 (577)
T KOG1258|consen 302 YYLDFEITLGDFSRVFILFERCLIP--CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESN 379 (577)
T ss_pred HHhhhhhhcccHHHHHHHHHHHHhH--HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhh
Confidence 3334444555555555555554321 11223344444444444455555554444333222221111111111122334
Q ss_pred CChhhHHHHHHHHHHcCCCCCCchHHHHHHHHhhhcCChHHHH---HHHHHHHhcCCCCChHhHHHHHHH-----HHHcC
Q 002549 617 DFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAE---SLVGCLRQRCAPVDRKVWNALIKA-----YAASG 688 (909)
Q Consensus 617 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~---~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~g 688 (909)
|++..|..+++.....- |+...+-..-+....+.|+.+.+. +++...... ..+..+...+.-- +.-.+
T Consensus 380 ~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~--~~~~~i~~~l~~~~~r~~~~i~~ 455 (577)
T KOG1258|consen 380 GNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEG--KENNGILEKLYVKFARLRYKIRE 455 (577)
T ss_pred ccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccc--ccCcchhHHHHHHHHHHHHHHhc
Confidence 55555555555555432 444444444444455555555555 222222221 1122222222211 22235
Q ss_pred CHHHHHHHHHHHHHcCCCCCcccHHHHHHHHH
Q 002549 689 CYERARAVFNTMMRDGPSPTVDSINGLLQALI 720 (909)
Q Consensus 689 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 720 (909)
+.+.|..++.++.+..+. +..-|..+++...
T Consensus 456 d~~~a~~~l~~~~~~~~~-~k~~~~~~~~~~~ 486 (577)
T KOG1258|consen 456 DADLARIILLEANDILPD-CKVLYLELIRFEL 486 (577)
T ss_pred CHHHHHHHHHHhhhcCCc-cHHHHHHHHHHHH
Confidence 666666666666654433 4444444444433
No 241
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.28 E-value=0.073 Score=57.69 Aligned_cols=113 Identities=16% Similarity=0.163 Sum_probs=64.9
Q ss_pred cCchHHHHHHHHHHHHCCCCCCHHhHHHH-HHHhhccCCHHHHHHHHHHHHHc--CCCC-ChhhHHHHHHHHHhcCChhh
Q 002549 792 GKRVRDVEAMVSEMKEAGFKPDLSIWNSM-LKLYTGIEDFKKTIQVYQEIQEA--DLQP-DEDSFNTLIIMYCRDCRPEE 867 (909)
Q Consensus 792 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~--~~~p-~~~~~~~l~~~~~~~g~~~~ 867 (909)
....+.|.++++.+.+ ..|+...|... +..+...|+.++|++.++++... ..+. ....+.-+++++...++|++
T Consensus 246 ~~~~~~a~~lL~~~~~--~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~ 323 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLK--RYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEE 323 (468)
T ss_pred CCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHH
Confidence 3455667777777766 35666555444 33455667777777777766541 1111 22455567777777777777
Q ss_pred HHHHHHHHHHc-CCCCChhhHHHHHHH-HhccCCH-------HHHHHhhc
Q 002549 868 GLSLMHEMRKL-GLEPKLDTYKSLISA-FGKQQQL-------EQAEELLK 908 (909)
Q Consensus 868 A~~~~~~~~~~-~~~p~~~~~~~l~~~-~~~~g~~-------~~A~~~~~ 908 (909)
|.+.+.++.+. .. ...+|.-+..+ +...|+. ++|.+++.
T Consensus 324 A~~~f~~L~~~s~W--Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~ 371 (468)
T PF10300_consen 324 AAEYFLRLLKESKW--SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFR 371 (468)
T ss_pred HHHHHHHHHhcccc--HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHH
Confidence 77777777752 22 23333333222 3556666 66655543
No 242
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.16 E-value=0.033 Score=53.15 Aligned_cols=98 Identities=15% Similarity=0.205 Sum_probs=78.8
Q ss_pred HHHHHHHHHhccCchHHHHHHHHHHHHCCCCCCH-Hh---HHHHHHHhhccCCHHHHHHHHHHHHHcCCCCC----hhhH
Q 002549 781 LYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDL-SI---WNSMLKLYTGIEDFKKTIQVYQEIQEADLQPD----EDSF 852 (909)
Q Consensus 781 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~ 852 (909)
.|+.-+.. .+.|++.+|.+.|...+++ .|+. .+ +.=|+.++..+|++++|...|..+.+ -.|+ +..+
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~--YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k--~~P~s~KApdal 218 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKK--YPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVK--DYPKSPKAPDAL 218 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHc--CCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHH--hCCCCCCChHHH
Confidence 56666654 4778899999999999985 3443 33 44578899999999999999999998 4554 4778
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHcCCCCChh
Q 002549 853 NTLIIMYCRDCRPEEGLSLMHEMRKLGLEPKLD 885 (909)
Q Consensus 853 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 885 (909)
.-|+.+..+.|+.++|..+|+++.+. .|+..
T Consensus 219 lKlg~~~~~l~~~d~A~atl~qv~k~--YP~t~ 249 (262)
T COG1729 219 LKLGVSLGRLGNTDEACATLQQVIKR--YPGTD 249 (262)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHH--CCCCH
Confidence 89999999999999999999999964 45543
No 243
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.15 E-value=0.0042 Score=38.42 Aligned_cols=32 Identities=28% Similarity=0.584 Sum_probs=26.8
Q ss_pred HHHHHHcCCCCC-hhhHHHHHHHHHhcCChhhHHH
Q 002549 837 YQEIQEADLQPD-EDSFNTLIIMYCRDCRPEEGLS 870 (909)
Q Consensus 837 ~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~ 870 (909)
|+++++ ++|+ +.+|..++.+|...|++++|++
T Consensus 2 y~kAie--~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIE--LNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHH--HCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 678888 8895 4889999999999999998863
No 244
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.06 E-value=2.8 Score=46.80 Aligned_cols=176 Identities=16% Similarity=0.191 Sum_probs=116.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHH----HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 002549 294 YNTIIHMYGKQGQHDVALQLYRDMKLSGRNPDVVTYT----VLIDSLGKANKISEAANVMSEMLDASVKPTLRTYSALIC 369 (909)
Q Consensus 294 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~----~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 369 (909)
...-++.+++...++-|+.+.+.-. .+..+.. ...+-+.+.|++++|...|-+-... +.| ..++.
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~~-----~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~ 405 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQH-----LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIK 405 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhcC-----CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHH
Confidence 4456777888888999988765532 2333333 3344556789999999998876642 233 23566
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHH
Q 002549 370 GYAKAGNRLEAEKTFYCMRRSGIRPDHLAYSVMLDIFLRFNETNKAMMLYQEMVSNGFTPDQALYEIMIGVLGRENKGEE 449 (909)
Q Consensus 370 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 449 (909)
-|........--.+++.+.+.|+ .+...-..|+.+|.+.++.+.-.++.+... .|.. ..-....+..+.+.+-.++
T Consensus 406 kfLdaq~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~ 481 (933)
T KOG2114|consen 406 KFLDAQRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDE 481 (933)
T ss_pred HhcCHHHHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHH
Confidence 66666667777778888888887 567777889999999999998777766554 2211 1123455666777777777
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHhcccHHHHHHHHHHH
Q 002549 450 IRKVVRDMKELSGINMQEISSILVKGECYDHAAEILRSA 488 (909)
Q Consensus 450 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 488 (909)
|..+..+... .+..+--++-..+++++|++.+..+
T Consensus 482 a~~LA~k~~~----he~vl~ille~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 482 AELLATKFKK----HEWVLDILLEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHHhcc----CHHHHHHHHHHhcCHHHHHHHHhcC
Confidence 7666554432 3333334445567788888887664
No 245
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.05 E-value=3.2 Score=46.42 Aligned_cols=223 Identities=13% Similarity=0.026 Sum_probs=125.6
Q ss_pred HHHHHHHHhhhcC-----ChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHc---CCHHHHHHHHHHHHHcCCCCCcccH
Q 002549 641 IYVDIIDAYGRLK-----LWQKAESLVGCLRQRCAPVDRKVWNALIKAYAAS---GCYERARAVFNTMMRDGPSPTVDSI 712 (909)
Q Consensus 641 ~~~~l~~~~~~~~-----~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~ 712 (909)
+...++.+|.+.. +.+.|..++.+..+.|.+ .....++.++... .+...|.++|..+.+.|.. .+.
T Consensus 290 a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~---~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~ 363 (552)
T KOG1550|consen 290 AQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGNP---DAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAI 363 (552)
T ss_pred cccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCCc---hHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHH
Confidence 4455555555532 556677777777665422 2222333333332 2567788888887776654 233
Q ss_pred HHHHHHHH----hcCchhhHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Q 002549 713 NGLLQALI----VDGRLNELYVVIQELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYHGMKAAGYFPTMYLYRVMSGL 788 (909)
Q Consensus 713 ~~l~~~~~----~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 788 (909)
-.+..+|. ...+...|..++++..+.| .|........+..+.. +.++.+...+..+.+.|..-....-..+...
T Consensus 364 ~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~ 441 (552)
T KOG1550|consen 364 YRLALCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYEVAQSNAAYLLDQ 441 (552)
T ss_pred HHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhhHHhhHHHHHHHh
Confidence 33333332 2335677778888777777 3333322333334444 6677776666666665433211111111111
Q ss_pred ---Hhc----cCchHHHHHHHHHHHHCCCCCCHHhHHHHHHHhhcc----CCHHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 002549 789 ---FCK----GKRVRDVEAMVSEMKEAGFKPDLSIWNSMLKLYTGI----EDFKKTIQVYQEIQEADLQPDEDSFNTLII 857 (909)
Q Consensus 789 ---~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 857 (909)
... ..+.+.+...+...... -+......+...|..- .+.+.|...|.++.+.+ .....+++.
T Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~a~~~---g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~----~~~~~nlg~ 514 (552)
T KOG1550|consen 442 SEEDLFSRGVISTLERAFSLYSRAAAQ---GNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG----AQALFNLGY 514 (552)
T ss_pred ccccccccccccchhHHHHHHHHHHhc---cCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh----hHHHhhhhh
Confidence 111 22455677777777653 3556666676666543 36899999999998844 667777777
Q ss_pred HHHhc-C--ChhhHHHHHHHHHHc
Q 002549 858 MYCRD-C--RPEEGLSLMHEMRKL 878 (909)
Q Consensus 858 ~~~~~-g--~~~~A~~~~~~~~~~ 878 (909)
.+-.- | ++..|.+++++..+.
T Consensus 515 ~~e~g~g~~~~~~a~~~~~~~~~~ 538 (552)
T KOG1550|consen 515 MHEHGEGIKVLHLAKRYYDQASEE 538 (552)
T ss_pred HHhcCcCcchhHHHHHHHHHHHhc
Confidence 66542 2 268899998888753
No 246
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.96 E-value=0.31 Score=47.56 Aligned_cols=184 Identities=9% Similarity=0.026 Sum_probs=120.0
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCchhhHHHHHHHHHhC-CC--CccHHHHHHHHHHHHhcCCHH
Q 002549 685 AASGCYERARAVFNTMMRDGPSPTVDSINGLLQALIVDGRLNELYVVIQELQDM-DF--KISKSSILLMLDAFARSGNIF 761 (909)
Q Consensus 685 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~--~~~~~~~~~l~~~~~~~g~~~ 761 (909)
...|+..+|...++++++..|+ |..+++..=.+|.-.|+.+.-...++++... +. +-....-..+.-++...|-++
T Consensus 114 ~~~g~~h~a~~~wdklL~d~Pt-Dlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDYPT-DLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred hccccccHHHHHHHHHHHhCch-hhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 4579999999999999999888 8889998889999999999888888888754 22 222333344555667899999
Q ss_pred HHHHHHHHHHhcCCCc-hHHHHHHHHHHHhccCchHHHHHHHHHHHHCCCCCCHHh-----HHHHHHHhhccCCHHHHHH
Q 002549 762 EVKKIYHGMKAAGYFP-TMYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDLSI-----WNSMLKLYTGIEDFKKTIQ 835 (909)
Q Consensus 762 ~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-----~~~l~~~~~~~g~~~~A~~ 835 (909)
+|.+.-++..+. .| +.-.-......+.-.|++.++.++..+-... -. +... |=...-.+...+.++.|++
T Consensus 193 dAEk~A~ralqi--N~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~-Wr-~s~mlasHNyWH~Al~~iE~aeye~ale 268 (491)
T KOG2610|consen 193 DAEKQADRALQI--NRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDD-WR-QSWMLASHNYWHTALFHIEGAEYEKALE 268 (491)
T ss_pred hHHHHHHhhccC--CCcchHHHHHHHHHHHhcchhhhHHHHHHhcccc-hh-hhhHHHhhhhHHHHHhhhcccchhHHHH
Confidence 999999988873 33 2223345566777889999999987765431 11 1111 1111123344579999999
Q ss_pred HHHHHHHcCCCCChh-hH---HHHHHHHHhcCChhhHHHHHH
Q 002549 836 VYQEIQEADLQPDED-SF---NTLIIMYCRDCRPEEGLSLMH 873 (909)
Q Consensus 836 ~~~~~~~~~~~p~~~-~~---~~l~~~~~~~g~~~~A~~~~~ 873 (909)
+|.+-+-..++.+.. +. .-+-.+..+...+++-.++-+
T Consensus 269 IyD~ei~k~l~k~Da~a~~~~ld~dgv~~~~d~~~kld~la~ 310 (491)
T KOG2610|consen 269 IYDREIWKRLEKDDAVARDVYLDLDGVDLRSDLWRKLDKLAD 310 (491)
T ss_pred HHHHHHHHHhhccchhhhhhhhhhhhHHhHHHHHHHHHhhhh
Confidence 998865433454432 22 223334444444554443333
No 247
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.90 E-value=0.14 Score=43.84 Aligned_cols=86 Identities=8% Similarity=0.154 Sum_probs=55.7
Q ss_pred HhccCchHHHHHHHHHHHHCCCCCCH---HhHHHHHHHhhccCCHHHHHHHHHHHHHcCCCCCh----hhHHHHHHHHHh
Q 002549 789 FCKGKRVRDVEAMVSEMKEAGFKPDL---SIWNSMLKLYTGIEDFKKTIQVYQEIQEADLQPDE----DSFNTLIIMYCR 861 (909)
Q Consensus 789 ~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~ 861 (909)
..+.|++++|.+.|+.+... ++... .....++.+|.+.|++++|+..+++.++ +.|++ .++...+-++..
T Consensus 20 ~l~~~~Y~~A~~~le~L~~r-yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFir--LhP~hp~vdYa~Y~~gL~~~~ 96 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTR-YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIR--LHPTHPNVDYAYYMRGLSYYE 96 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhc-CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCCCccHHHHHHHHHHHH
Confidence 44667788888888777653 23222 3456677788888888888888888888 78853 233344444444
Q ss_pred cCC---------------hhhHHHHHHHHHH
Q 002549 862 DCR---------------PEEGLSLMHEMRK 877 (909)
Q Consensus 862 ~g~---------------~~~A~~~~~~~~~ 877 (909)
... ..+|...|+++++
T Consensus 97 ~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~ 127 (142)
T PF13512_consen 97 QDEGSLQSFFRSDRDPTPARQAFRDFEQLVR 127 (142)
T ss_pred HhhhHHhhhcccccCcHHHHHHHHHHHHHHH
Confidence 433 5666777777664
No 248
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.87 E-value=0.27 Score=42.22 Aligned_cols=84 Identities=18% Similarity=0.144 Sum_probs=64.8
Q ss_pred chHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCC---hHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHH
Q 002549 639 LSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVD---RKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGL 715 (909)
Q Consensus 639 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 715 (909)
...+..-+....+.|++++|++.|+.+... .|.. ..+.-.|+.+|...|++++|...+++.++..|..-.+.|...
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~r-yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y 88 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTR-YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY 88 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhc-CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 444556666778889999999999998876 5544 445556888999999999999999999999887556677777
Q ss_pred HHHHHhcC
Q 002549 716 LQALIVDG 723 (909)
Q Consensus 716 ~~~~~~~g 723 (909)
+.+++...
T Consensus 89 ~~gL~~~~ 96 (142)
T PF13512_consen 89 MRGLSYYE 96 (142)
T ss_pred HHHHHHHH
Confidence 77765543
No 249
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=95.85 E-value=3.3 Score=44.51 Aligned_cols=186 Identities=12% Similarity=0.087 Sum_probs=104.3
Q ss_pred CchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHH
Q 002549 638 DLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQ 717 (909)
Q Consensus 638 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 717 (909)
....|....+.....|+.+...-.|++.+-. ...-...|--.+.-....|+.+-|..++.+..+...+ +......+-.
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k-~~~~i~L~~a 373 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVK-KTPIIHLLEA 373 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCC-CCcHHHHHHH
Confidence 3455666666667777777777777776543 2334556666666556668888888777777665433 3222222222
Q ss_pred H-HHhcCchhhHHHHHHHHHhCCCCccH-HHHHHHHHHHHhcCCHHHHH---HHHHHHHhcCCCch--HHHHHHHHH-HH
Q 002549 718 A-LIVDGRLNELYVVIQELQDMDFKISK-SSILLMLDAFARSGNIFEVK---KIYHGMKAAGYFPT--MYLYRVMSG-LF 789 (909)
Q Consensus 718 ~-~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~---~~~~~~~~~~~~p~--~~~~~~l~~-~~ 789 (909)
. .-..|++..|..+++.+.+.- |+- ..-..-+....+.|+.+.+. +++.........+. ...+...+. .+
T Consensus 374 ~f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~ 451 (577)
T KOG1258|consen 374 RFEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRY 451 (577)
T ss_pred HHHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHH
Confidence 2 334678888888888877654 332 22222344556777777777 33333332111111 111111121 12
Q ss_pred hccCchHHHHHHHHHHHHCCCCCCHHhHHHHHHHhhccC
Q 002549 790 CKGKRVRDVEAMVSEMKEAGFKPDLSIWNSMLKLYTGIE 828 (909)
Q Consensus 790 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 828 (909)
.-.++.+.|..++.++.+. .+++...|..++..+..++
T Consensus 452 ~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 452 KIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 2346778888888888773 3445567777777666553
No 250
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.80 E-value=0.13 Score=49.32 Aligned_cols=67 Identities=12% Similarity=0.089 Sum_probs=49.5
Q ss_pred chHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCC---hHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 002549 639 LSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVD---RKVWNALIKAYAASGCYERARAVFNTMMRDGPS 706 (909)
Q Consensus 639 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 706 (909)
+.+++.|+.++..+|++++|...|..+.+. .|.+ +..+-.|+.+..+.|+.++|..+|+++.+..|.
T Consensus 178 ~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~-~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~ 247 (262)
T COG1729 178 PNAYYWLGESLYAQGDYEDAAYIFARVVKD-YPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPG 247 (262)
T ss_pred chhHHHHHHHHHhcccchHHHHHHHHHHHh-CCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC
Confidence 566777888888888888888888877664 3322 455666777777888888888888888887665
No 251
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.74 E-value=1 Score=43.79 Aligned_cols=51 Identities=10% Similarity=0.037 Sum_probs=30.9
Q ss_pred HhcCCHHHHHHHHHHhhccCCcccchhhHHHHHHHHHhcccHHHHHHHHHHHH
Q 002549 543 CKAQKLDAALEEYSNAWGFGFFSKSKTMYESLIHSCEYNERFAEASQVFSDMR 595 (909)
Q Consensus 543 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 595 (909)
...|++.+|...|..+.... |.+...-..++.+|...|+.+.|..++..+.
T Consensus 145 ~~~e~~~~a~~~~~~al~~~--~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP 195 (304)
T COG3118 145 IEAEDFGEAAPLLKQALQAA--PENSEAKLLLAECLLAAGDVEAAQAILAALP 195 (304)
T ss_pred hhccchhhHHHHHHHHHHhC--cccchHHHHHHHHHHHcCChHHHHHHHHhCc
Confidence 34555566666665555544 4555556666666667777777766666653
No 252
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.73 E-value=1.1 Score=43.52 Aligned_cols=155 Identities=9% Similarity=0.142 Sum_probs=82.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCchhhHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCCHH
Q 002549 682 KAYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQALIVDGRLNELYVVIQELQDMDFKISKSSILLMLDAFARSGNIF 761 (909)
Q Consensus 682 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 761 (909)
......|++.+|...|..+....++ +......++.+|...|+.+.|..++..+....-....... .
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l-------------~ 207 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGL-------------Q 207 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHH-------------H
Confidence 3445677888888888887777666 4555566667777777777777777664432211111110 1
Q ss_pred HHHHHHHHHHhcCCCchHHHHHHHHHHHhccCchHHHHHHHHHHHHCCCCC-CHHhHHHHHHHhhccCCHHHHHHHHHHH
Q 002549 762 EVKKIYHGMKAAGYFPTMYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKP-DLSIWNSMLKLYTGIEDFKKTIQVYQEI 840 (909)
Q Consensus 762 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 840 (909)
..++++. +.....+..++-++.-. .| |...-..+...+...|+.+.|++.+-.+
T Consensus 208 a~i~ll~----------------------qaa~~~~~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~ 262 (304)
T COG3118 208 AQIELLE----------------------QAAATPEIQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLAL 262 (304)
T ss_pred HHHHHHH----------------------HHhcCCCHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1112222 22222222233333322 34 4455555666666667777777777777
Q ss_pred HHcCCCC-ChhhHHHHHHHHHhcCChh-hHHHHHHHH
Q 002549 841 QEADLQP-DEDSFNTLIIMYCRDCRPE-EGLSLMHEM 875 (909)
Q Consensus 841 ~~~~~~p-~~~~~~~l~~~~~~~g~~~-~A~~~~~~~ 875 (909)
++++..- |...-..++..+.-.|.-+ .+.++.++|
T Consensus 263 l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~RRkL 299 (304)
T COG3118 263 LRRDRGFEDGEARKTLLELFEAFGPADPLVLAYRRKL 299 (304)
T ss_pred HHhcccccCcHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 6654444 3455666666666555222 444444444
No 253
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=95.73 E-value=1 Score=41.18 Aligned_cols=91 Identities=14% Similarity=0.026 Sum_probs=66.1
Q ss_pred HhhcCChhhHHHHHHHHHHcCCCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHH
Q 002549 613 YCKMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYER 692 (909)
Q Consensus 613 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 692 (909)
|-..|-..-|+.-|.+++. +.|+-+.+++.++--+...|+++.|.+.|+...+.. |....+.-.-+-++.-.|++..
T Consensus 75 YDSlGL~~LAR~DftQaLa--i~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELD-p~y~Ya~lNRgi~~YY~gR~~L 151 (297)
T COG4785 75 YDSLGLRALARNDFSQALA--IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRYKL 151 (297)
T ss_pred hhhhhHHHHHhhhhhhhhh--cCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccC-CcchHHHhccceeeeecCchHh
Confidence 3444556666667777776 889999999999999999999999999999998873 2222222222222334589999
Q ss_pred HHHHHHHHHHcCCC
Q 002549 693 ARAVFNTMMRDGPS 706 (909)
Q Consensus 693 A~~~~~~~~~~~~~ 706 (909)
|.+-+-+--+.+++
T Consensus 152 Aq~d~~~fYQ~D~~ 165 (297)
T COG4785 152 AQDDLLAFYQDDPN 165 (297)
T ss_pred hHHHHHHHHhcCCC
Confidence 99988888876665
No 254
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.65 E-value=2.7 Score=45.83 Aligned_cols=82 Identities=10% Similarity=-0.096 Sum_probs=38.6
Q ss_pred hhhHHHHHHHHHHcCCCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcC---CCCChHhHHHHHHHHHHcCCHHHHHH
Q 002549 619 PETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRC---APVDRKVWNALIKAYAASGCYERARA 695 (909)
Q Consensus 619 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~ 695 (909)
.+.|..+++.+.. .-|++.-....-++.+...|+.++|++.|+++.... .......+.-++.++.-..+|++|.+
T Consensus 249 ~~~a~~lL~~~~~--~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~ 326 (468)
T PF10300_consen 249 LEEAEELLEEMLK--RYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAE 326 (468)
T ss_pred HHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHH
Confidence 3444455444444 344444444455555555555555555555433210 01122233344444555555555555
Q ss_pred HHHHHHH
Q 002549 696 VFNTMMR 702 (909)
Q Consensus 696 ~~~~~~~ 702 (909)
.|.++.+
T Consensus 327 ~f~~L~~ 333 (468)
T PF10300_consen 327 YFLRLLK 333 (468)
T ss_pred HHHHHHh
Confidence 5555554
No 255
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.64 E-value=0.33 Score=42.50 Aligned_cols=128 Identities=9% Similarity=0.099 Sum_probs=74.5
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCc-hHHHHHHHHHHHhccCchHHHHHHHHHHHHCCCCCCHH-hHHHH--HHHhhccCC
Q 002549 754 FARSGNIFEVKKIYHGMKAAGYFP-TMYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDLS-IWNSM--LKLYTGIED 829 (909)
Q Consensus 754 ~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l--~~~~~~~g~ 829 (909)
+...|+.++|+..|..+.+.|+.. .+.............|+...|...|+++-...-.|-.. -..-| ...+...|-
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 455677788888888887755432 12223334455667788888888888876543333322 11112 223456677
Q ss_pred HHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCC
Q 002549 830 FKKTIQVYQEIQEADLQP-DEDSFNTLIIMYCRDCRPEEGLSLMHEMRKLGLEP 882 (909)
Q Consensus 830 ~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 882 (909)
++....-.+.+--. -+| ....--.|+-+-.+.|++.+|.++|+.+..-...|
T Consensus 148 y~dV~srvepLa~d-~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 148 YDDVSSRVEPLAGD-GNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HHHHHHHhhhccCC-CChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 77766665555432 233 22344456667777888888888888777533333
No 256
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=95.63 E-value=3 Score=42.46 Aligned_cols=108 Identities=20% Similarity=0.244 Sum_probs=74.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 002549 294 YNTIIHMYGKQGQHDVALQLYRDMKLSGRNPDVVTYTVLIDSLGKANKISEAANVMSEMLDASVKPTLRTYSALICGYAK 373 (909)
Q Consensus 294 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 373 (909)
.+..+.-+...|+...|..+-.+.. .|+..-|-..+.+++..+++++-.++... . -++.-|-.++..|.+
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s-k-----KsPIGyepFv~~~~~ 249 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS-K-----KSPIGYEPFVEACLK 249 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC-C-----CCCCChHHHHHHHHH
Confidence 3444555667788888888777775 57888888888888888888877665432 1 133567777888888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHH
Q 002549 374 AGNRLEAEKTFYCMRRSGIRPDHLAYSVMLDIFLRFNETNKAMMLYQE 421 (909)
Q Consensus 374 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 421 (909)
.|...+|..++.++ + +..-+..|.+.|++.+|.+.-.+
T Consensus 250 ~~~~~eA~~yI~k~------~----~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 250 YGNKKEASKYIPKI------P----DEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred CCCHHHHHHHHHhC------C----hHHHHHHHHHCCCHHHHHHHHHH
Confidence 88888888777652 1 24456677888888887665443
No 257
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.61 E-value=3.2 Score=42.63 Aligned_cols=138 Identities=10% Similarity=0.058 Sum_probs=95.7
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChHHHHHH
Q 002549 76 FSPNARMLATILAVLGKANQENLAVETFMRAESAVDDTVQVYNAMMGIYARNGRFQKVQELLDLMRKRGCEPDLVSFNTL 155 (909)
Q Consensus 76 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l 155 (909)
.|.|..+|-.||.-|.-.+..++.++++.++....|--..+|..-+++-...++++....+|.+.+.. ..+...|...
T Consensus 38 NPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k--~l~ldLW~lY 115 (660)
T COG5107 38 NPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKK--SLNLDLWMLY 115 (660)
T ss_pred CchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhh--hccHhHHHHH
Confidence 37788899999999999999999999999999888888899999999999999999999999999877 3456677777
Q ss_pred HHHHHHcCCCCchHH----HHHHHHHHH-CCCCCCH-HHHHHHHHHH---------HhcCCHHHHHHHHHHHHhC
Q 002549 156 INARLRSGAMVPNLG----VDLLNEVRR-SGLRPDI-ITYNTIISAC---------SRESNLEEAMKVYGDLEAH 215 (909)
Q Consensus 156 l~~~~~~~~~~~~~a----~~~~~~~~~-~~~~~~~-~~~~~li~~~---------~~~g~~~~A~~~~~~~~~~ 215 (909)
+.-.-+....-.+++ .+.|+-... .++.|-. ..|+..+... ..+.+.+.....|.+|+..
T Consensus 116 l~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~t 190 (660)
T COG5107 116 LEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQT 190 (660)
T ss_pred HHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHcC
Confidence 765554442212222 233333332 3555532 2334333322 1233456666677777654
No 258
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.61 E-value=2.1 Score=49.68 Aligned_cols=106 Identities=10% Similarity=0.147 Sum_probs=53.9
Q ss_pred HHHHhcCchhhHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccCchH
Q 002549 717 QALIVDGRLNELYVVIQELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYHGMKAAGYFPTMYLYRVMSGLFCKGKRVR 796 (909)
Q Consensus 717 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 796 (909)
..+.+.+++++|.-.|...=+ ..-.+.+|...|+|++|+.+..++... -..-..+--.|+..+...+++-
T Consensus 947 ~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~-~de~~~~a~~L~s~L~e~~kh~ 1016 (1265)
T KOG1920|consen 947 DHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEG-KDELVILAEELVSRLVEQRKHY 1016 (1265)
T ss_pred HHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCC-HHHHHHHHHHHHHHHHHcccch
Confidence 334455666666665554321 112345666666666666666655431 0011112245556666666666
Q ss_pred HHHHHHHHHHHCCCCCCHHhHHHHHHHhhccCCHHHHHHHHHHH
Q 002549 797 DVEAMVSEMKEAGFKPDLSIWNSMLKLYTGIEDFKKTIQVYQEI 840 (909)
Q Consensus 797 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 840 (909)
+|-++..+... .|.. .+..|++...+++|+......
T Consensus 1017 eAa~il~e~~s---d~~~-----av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1017 EAAKILLEYLS---DPEE-----AVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred hHHHHHHHHhc---CHHH-----HHHHHhhHhHHHHHHHHHHhc
Confidence 66666666653 2221 234455555666666655543
No 259
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.37 E-value=0.035 Score=36.98 Aligned_cols=31 Identities=26% Similarity=0.458 Sum_probs=16.2
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 002549 676 VWNALIKAYAASGCYERARAVFNTMMRDGPS 706 (909)
Q Consensus 676 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 706 (909)
++..++..|...|++++|.++|+++++..|+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~ 33 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPD 33 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 3444555555555555555555555554444
No 260
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.35 E-value=3.5 Score=41.44 Aligned_cols=161 Identities=12% Similarity=0.124 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHhcCCHH---HHHHHHHHHHhc-CCCchHHHHHHHHHHHhccCchHHHHHHHHHHHHCCCCCCHHhHHHH
Q 002549 745 SSILLMLDAFARSGNIF---EVKKIYHGMKAA-GYFPTMYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDLSIWNSM 820 (909)
Q Consensus 745 ~~~~~l~~~~~~~g~~~---~a~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 820 (909)
.++..++.+|...+..+ +|..+.+.+.+. |-. +.++-.-+..+.+.++.+++.+.+.+|+.. +.-....+..+
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~--~~~~~L~l~il~~~~~~~~~~~~L~~mi~~-~~~~e~~~~~~ 161 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGNK--PEVFLLKLEILLKSFDEEEYEEILMRMIRS-VDHSESNFDSI 161 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCC--cHHHHHHHHHHhccCChhHHHHHHHHHHHh-cccccchHHHH
Confidence 34555667776666544 344455555432 222 233333445555577778888888888763 22122334444
Q ss_pred HHHhhcc--CCHHHHHHHHHHHHHcCCCCChhhH-----HHHHHHHHhcCC------hhhHHHHHHHHHH-cCCCCChhh
Q 002549 821 LKLYTGI--EDFKKTIQVYQEIQEADLQPDEDSF-----NTLIIMYCRDCR------PEEGLSLMHEMRK-LGLEPKLDT 886 (909)
Q Consensus 821 ~~~~~~~--g~~~~A~~~~~~~~~~~~~p~~~~~-----~~l~~~~~~~g~------~~~A~~~~~~~~~-~~~~p~~~~ 886 (909)
+..+... .....|...+.+++-.-+.|....+ .+..+.....++ .+...++++...+ .+.+.+..+
T Consensus 162 l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~ 241 (278)
T PF08631_consen 162 LHHIKQLAEKSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEA 241 (278)
T ss_pred HHHHHHHHhhCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 4443221 2345666666666543345533211 122222222222 3333344443333 222333333
Q ss_pred HHHH-------HHHHhccCCHHHHHHhhc
Q 002549 887 YKSL-------ISAFGKQQQLEQAEELLK 908 (909)
Q Consensus 887 ~~~l-------~~~~~~~g~~~~A~~~~~ 908 (909)
-.++ +..+.+.+++++|..|++
T Consensus 242 ~~a~~~LLW~~~~~~~~~k~y~~A~~w~~ 270 (278)
T PF08631_consen 242 ASAIHTLLWNKGKKHYKAKNYDEAIEWYE 270 (278)
T ss_pred HHHHHHHHHHHHHHHHhhcCHHHHHHHHH
Confidence 2222 344667888898888875
No 261
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.29 E-value=1.4 Score=46.10 Aligned_cols=75 Identities=16% Similarity=0.191 Sum_probs=49.5
Q ss_pred HHHHHHHhhcCChhhHHHHHHHHHHcCCCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCC-hHhHHHHH
Q 002549 607 RSMVVAYCKMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVD-RKVWNALI 681 (909)
Q Consensus 607 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~ 681 (909)
..+..++.+.|+.++|++.+.++++..-..+...+...|+..+...+.+.++..++.+..+...|.+ ...|+..+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence 4455566677888888888888776322223466778888888888888888888888654433333 34455433
No 262
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.23 E-value=0.15 Score=48.25 Aligned_cols=116 Identities=19% Similarity=0.327 Sum_probs=75.9
Q ss_pred HHHHHHhhhCCCCCHHHHHHHHHHHHHc-----CChhHHHHHHHHHHHcCCCCChHHHHHHHHHHHHcCCCCchHHHHHH
Q 002549 100 VETFMRAESAVDDTVQVYNAMMGIYARN-----GRFQKVQELLDLMRKRGCEPDLVSFNTLINARLRSGAMVPNLGVDLL 174 (909)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~a~~~~ 174 (909)
+..|..+... .++-.+|-..+..+... +.++-....+..|.+.|+..|..+|+.||+.+-+..-. + ..+|
T Consensus 54 e~~F~aa~~~-~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfi-P---~nvf 128 (406)
T KOG3941|consen 54 EKQFEAAEPE-KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFI-P---QNVF 128 (406)
T ss_pred hhhhhccCcc-cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccc-c---HHHH
Confidence 3444444322 45566666666665433 45555666778899999999999999999987654321 1 1222
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 002549 175 NEVRRSGLRPDIITYNTIISACSRESNLEEAMKVYGDLEAHNCQPDLWTYNAMISVYGRCGLF 237 (909)
Q Consensus 175 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 237 (909)
+. ..--|-+ .-+-++.++++|..+|+.||-.+-..++++|++.+-.
T Consensus 129 Q~---------------~F~HYP~--QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 129 QK---------------VFLHYPQ--QQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HH---------------HHhhCch--hhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 22 2222322 3356788888998889889988888888888887764
No 263
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.20 E-value=3 Score=39.84 Aligned_cols=53 Identities=21% Similarity=0.281 Sum_probs=30.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCccc---HHHHHHHHHhcCchhhHHHHHH
Q 002549 680 LIKAYAASGCYERARAVFNTMMRDGPSPTVDS---INGLLQALIVDGRLNELYVVIQ 733 (909)
Q Consensus 680 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~ 733 (909)
+++-|.+.|.+-.|..-++.+++..+. ...+ +..+..+|...|-.++|...-+
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~y~~-t~~~~eaL~~l~eaY~~lgl~~~a~~~~~ 228 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLENYPD-TSAVREALARLEEAYYALGLTDEAKKTAK 228 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhcccc-ccchHHHHHHHHHHHHHhCChHHHHHHHH
Confidence 456677777777777777777776443 2222 3333344555555555544433
No 264
>PRK09687 putative lyase; Provisional
Probab=95.15 E-value=4 Score=40.87 Aligned_cols=202 Identities=8% Similarity=-0.047 Sum_probs=117.4
Q ss_pred ChHhHHHHHHHHHHcCCH----HHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCch-----hhHHHHHHHHHhCCCCcc
Q 002549 673 DRKVWNALIKAYAASGCY----ERARAVFNTMMRDGPSPTVDSINGLLQALIVDGRL-----NELYVVIQELQDMDFKIS 743 (909)
Q Consensus 673 ~~~~~~~l~~~~~~~g~~----~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-----~~A~~~~~~~~~~~~~~~ 743 (909)
|+..-...+.++.+.|+. +++...+..+....+ +...-...+.++...+.. ..+...+..+.. .++
T Consensus 67 d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~D~--d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~ 141 (280)
T PRK09687 67 NPIERDIGADILSQLGMAKRCQDNVFNILNNLALEDK--SACVRASAINATGHRCKKNPLYSPKIVEQSQITAF---DKS 141 (280)
T ss_pred CHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcCC--CHHHHHHHHHHHhcccccccccchHHHHHHHHHhh---CCC
Confidence 555555556666666652 355666665544333 222233333333333211 223333333222 234
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccC-chHHHHHHHHHHHHCCCCCCHHhHHHHHH
Q 002549 744 KSSILLMLDAFARSGNIFEVKKIYHGMKAAGYFPTMYLYRVMSGLFCKGK-RVRDVEAMVSEMKEAGFKPDLSIWNSMLK 822 (909)
Q Consensus 744 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 822 (909)
..+-...+.++.+.|+ +++...+-.+++ .++..+-...+.++++.+ ...++...+..++. .+|..+-...+.
T Consensus 142 ~~VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~ 214 (280)
T PRK09687 142 TNVRFAVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAII 214 (280)
T ss_pred HHHHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHH
Confidence 4444556666666666 456666666665 255556666666676653 24567777777774 457777777778
Q ss_pred HhhccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHh
Q 002549 823 LYTGIEDFKKTIQVYQEIQEADLQPDEDSFNTLIIMYCRDCRPEEGLSLMHEMRKLGLEPKLDTYKSLISAFG 895 (909)
Q Consensus 823 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 895 (909)
++.+.|+ .+|+..+-+.++ .++ .....+.++...|.. +|...+..+.+ -.||..+....+.++.
T Consensus 215 aLg~~~~-~~av~~Li~~L~---~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~--~~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 215 GLALRKD-KRVLSVLIKELK---KGT--VGDLIIEAAGELGDK-TLLPVLDTLLY--KFDDNEIITKAIDKLK 278 (280)
T ss_pred HHHccCC-hhHHHHHHHHHc---CCc--hHHHHHHHHHhcCCH-hHHHHHHHHHh--hCCChhHHHHHHHHHh
Confidence 8888776 678888888877 233 345677888888884 78888888874 3456666555555543
No 265
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.09 E-value=0.071 Score=35.48 Aligned_cols=41 Identities=29% Similarity=0.425 Sum_probs=30.0
Q ss_pred hHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHH
Q 002549 640 SIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALI 681 (909)
Q Consensus 640 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 681 (909)
.++..++..|...|++++|+++|+++++. .|.|+.+|..++
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~-~P~~~~a~~~La 42 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALAL-DPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH-CcCCHHHHHHhh
Confidence 35667777888888888888888888776 566777776654
No 266
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.97 E-value=4.5 Score=45.32 Aligned_cols=213 Identities=12% Similarity=0.054 Sum_probs=132.0
Q ss_pred hcCChHHHHHHHHHHHh-------cCCCCChHhHHHHHHHHHHcC-----CHHHHHHHHHHHHHcCCCCCcccHHHHHHH
Q 002549 651 RLKLWQKAESLVGCLRQ-------RCAPVDRKVWNALIKAYAASG-----CYERARAVFNTMMRDGPSPTVDSINGLLQA 718 (909)
Q Consensus 651 ~~~~~~~A~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 718 (909)
..++.+.|...++.+.+ .+ ++...+.++.+|.+.. +.+.|..++.+..+.|.. + ....++..
T Consensus 261 ~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~-~--a~~~lg~~ 334 (552)
T KOG1550|consen 261 VTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGNP-D--AQYLLGVL 334 (552)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCCc-h--HHHHHHHH
Confidence 44566677777666654 44 4556778888888753 678899999999987654 3 33344444
Q ss_pred HHhc---CchhhHHHHHHHHHhCCCCccHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHh
Q 002549 719 LIVD---GRLNELYVVIQELQDMDFKISKSSILLMLDAFARS-----GNIFEVKKIYHGMKAAGYFPTMYLYRVMSGLFC 790 (909)
Q Consensus 719 ~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 790 (909)
+... .+...|.++|....+.|..+...- +. .|... .+...|..++.+..+.| .|...--......+.
T Consensus 335 ~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~---la-~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g 409 (552)
T KOG1550|consen 335 YETGTKERDYRRAFEYYSLAAKAGHILAIYR---LA-LCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYG 409 (552)
T ss_pred HHcCCccccHHHHHHHHHHHHHcCChHHHHH---HH-HHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHc
Confidence 4433 357899999999999885443221 11 23333 37899999999999988 333222223334444
Q ss_pred ccCchHHHHHHHHHHHHCCCCCCHHhHHHH-HHHh-----hc--cCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 002549 791 KGKRVRDVEAMVSEMKEAGFKPDLSIWNSM-LKLY-----TG--IEDFKKTIQVYQEIQEADLQPDEDSFNTLIIMYCRD 862 (909)
Q Consensus 791 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l-~~~~-----~~--~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 862 (909)
. ++.+.+.-.+..+.+.+.+ ...+-... +... .. ..+.+.+...+.+... .-+......+++.|..-
T Consensus 410 ~-~~~~~~~~~~~~~a~~g~~-~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~---~g~~~a~~~lgd~y~~g 484 (552)
T KOG1550|consen 410 V-GRYDTALALYLYLAELGYE-VAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAA---QGNADAILKLGDYYYYG 484 (552)
T ss_pred c-ccccHHHHHHHHHHHhhhh-HHhhHHHHHHHhccccccccccccchhHHHHHHHHHHh---ccCHHHHhhhcceeeec
Confidence 5 8888877777766654432 11111111 1111 11 2367888888888876 33556666777766643
Q ss_pred ---C-ChhhHHHHHHHHHHcC
Q 002549 863 ---C-RPEEGLSLMHEMRKLG 879 (909)
Q Consensus 863 ---g-~~~~A~~~~~~~~~~~ 879 (909)
+ +++.|...+......+
T Consensus 485 ~g~~~d~~~a~~~y~~a~~~~ 505 (552)
T KOG1550|consen 485 LGTGRDPEKAAAQYARASEQG 505 (552)
T ss_pred CCCCCChHHHHHHHHHHHHhh
Confidence 2 4778888877776554
No 267
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.93 E-value=1.9 Score=36.07 Aligned_cols=62 Identities=11% Similarity=0.218 Sum_probs=31.1
Q ss_pred HHHHHHHhccCchHHHHHHHHHHHHCCCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHcCC
Q 002549 783 RVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDLSIWNSMLKLYTGIEDFKKTIQVYQEIQEADL 845 (909)
Q Consensus 783 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 845 (909)
...++.+.+.|+-|+-.+++.++.+. -.|+......+..+|.+.|+..+|-+++.++.+.|+
T Consensus 90 D~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 90 DLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 33444555566666666666665431 245555555566666666666666666666666543
No 268
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=94.79 E-value=0.46 Score=40.47 Aligned_cols=47 Identities=13% Similarity=0.164 Sum_probs=22.6
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHH
Q 002549 323 NPDVVTYTVLIDSLGKANKISEAANVMSEMLDA-SVKPTLRTYSALIC 369 (909)
Q Consensus 323 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~ 369 (909)
.|+..+..+++.+|+..|++..|+++.+...+. +++.+..+|..|+.
T Consensus 49 ~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 49 YPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 345555555555555555555555555554332 33334444444444
No 269
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.70 E-value=0.37 Score=43.29 Aligned_cols=85 Identities=13% Similarity=0.161 Sum_probs=47.2
Q ss_pred HhccCchHHHHHHHHHHHHCCCCCCH-----HhHHHHHHHhhccCCHHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhc
Q 002549 789 FCKGKRVRDVEAMVSEMKEAGFKPDL-----SIWNSMLKLYTGIEDFKKTIQVYQEIQEADLQPDE-DSFNTLIIMYCRD 862 (909)
Q Consensus 789 ~~~~g~~~~A~~~~~~~~~~~~~p~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~ 862 (909)
+.+.|.+++|..-|..+++. ++|-+ +.|..-..+..+.+..+.|++-..++++ ++|.. .++...+.+|-+.
T Consensus 105 ~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaie--l~pty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIE--LNPTYEKALERRAEAYEKM 181 (271)
T ss_pred hhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHh--cCchhHHHHHHHHHHHHhh
Confidence 34556666666666665552 22211 2233334455556666666666666666 66633 5555556666666
Q ss_pred CChhhHHHHHHHHH
Q 002549 863 CRPEEGLSLMHEMR 876 (909)
Q Consensus 863 g~~~~A~~~~~~~~ 876 (909)
.++++|++-|+++.
T Consensus 182 ek~eealeDyKki~ 195 (271)
T KOG4234|consen 182 EKYEEALEDYKKIL 195 (271)
T ss_pred hhHHHHHHHHHHHH
Confidence 66666666666665
No 270
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.68 E-value=5.4 Score=40.10 Aligned_cols=19 Identities=11% Similarity=0.179 Sum_probs=12.9
Q ss_pred HhhccCCHHHHHHHHHHHH
Q 002549 823 LYTGIEDFKKTIQVYQEIQ 841 (909)
Q Consensus 823 ~~~~~g~~~~A~~~~~~~~ 841 (909)
.+.+.+++++|.+.|+-.+
T Consensus 255 ~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 255 KHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHhhcCHHHHHHHHHHHH
Confidence 4556678888887777544
No 271
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.55 E-value=2.1 Score=37.75 Aligned_cols=123 Identities=13% Similarity=0.014 Sum_probs=60.3
Q ss_pred hcccHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCCc--hHHHHHHHHhhhcCChH
Q 002549 580 YNERFAEASQVFSDMRFYNIEPSEDL-YRSMVVAYCKMDFPETAHFIADQAEKKGIPFEDL--SIYVDIIDAYGRLKLWQ 656 (909)
Q Consensus 580 ~~g~~~~A~~~~~~m~~~~~~p~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~ 656 (909)
+.+..++|+.-|.++.+.|...-+.. .........+.|+...|+..|+++-...-.|... .+-..-+.++...|.++
T Consensus 70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~ 149 (221)
T COG4649 70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYD 149 (221)
T ss_pred HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHH
Confidence 34445555555555544433222111 1122233444555555555555544322222111 01111223445556666
Q ss_pred HHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 002549 657 KAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMR 702 (909)
Q Consensus 657 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 702 (909)
+.....+.+...+.|.....-.+|.-+-.+.|++..|...|..+..
T Consensus 150 dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 150 DVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 6666666655444444455556666666677777777777777655
No 272
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.43 E-value=3.1 Score=36.59 Aligned_cols=85 Identities=11% Similarity=0.094 Sum_probs=46.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 002549 190 NTIISACSRESNLEEAMKVYGDLEAHNCQPDLWTYNAMISVYGRCGLFEKAEQLFKELESKGFFPDAVTYNSLLYAFARE 269 (909)
Q Consensus 190 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 269 (909)
..++..+...+.......+++.+...+ ..+....+.++..|++.+ ..+..+.+.. .++......++..|.+.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHc
Confidence 345555556666777777777766665 355666667777766543 2333333331 12333344455555555
Q ss_pred CCHHHHHHHHHHH
Q 002549 270 GNVEKVKEISENM 282 (909)
Q Consensus 270 g~~~~a~~~~~~~ 282 (909)
+-++++.-++.++
T Consensus 83 ~l~~~~~~l~~k~ 95 (140)
T smart00299 83 KLYEEAVELYKKD 95 (140)
T ss_pred CcHHHHHHHHHhh
Confidence 6565555555443
No 273
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.42 E-value=1.9 Score=46.19 Aligned_cols=132 Identities=16% Similarity=0.132 Sum_probs=64.3
Q ss_pred HhcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCCchHHHHHHHHhhhcCChHHH
Q 002549 579 EYNERFAEASQVFSDMRFYNIEPSEDLYRSMVVAYCKMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKA 658 (909)
Q Consensus 579 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 658 (909)
..+++++++..+.+.-.-. ......-...++..+.+.|.++.|+++-.. + ..-..+..+.|+++.|
T Consensus 272 v~~~d~~~v~~~i~~~~ll-~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D----------~---~~rFeLAl~lg~L~~A 337 (443)
T PF04053_consen 272 VLRGDFEEVLRMIAASNLL-PNIPKDQGQSIARFLEKKGYPELALQFVTD----------P---DHRFELALQLGNLDIA 337 (443)
T ss_dssp HHTT-HHH-----HHHHTG-GG--HHHHHHHHHHHHHTT-HHHHHHHSS-----------H---HHHHHHHHHCT-HHHH
T ss_pred HHcCChhhhhhhhhhhhhc-ccCChhHHHHHHHHHHHCCCHHHHHhhcCC----------h---HHHhHHHHhcCCHHHH
Confidence 3455666655554311000 011133355566666666666666665221 1 1223444556666666
Q ss_pred HHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCchhhHHHHHHHHHhC
Q 002549 659 ESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQALIVDGRLNELYVVIQELQDM 738 (909)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 738 (909)
.++.++ .++...|..|+.....+|+++-|.+.|.+.. -+..|.-.|.-.|+.+.-.++.+.....
T Consensus 338 ~~~a~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~---------d~~~L~lLy~~~g~~~~L~kl~~~a~~~ 402 (443)
T PF04053_consen 338 LEIAKE------LDDPEKWKQLGDEALRQGNIELAEECYQKAK---------DFSGLLLLYSSTGDREKLSKLAKIAEER 402 (443)
T ss_dssp HHHCCC------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred HHHHHh------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc---------CccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence 555432 2356677777777777777777777777751 1455555566666655555544444443
Q ss_pred C
Q 002549 739 D 739 (909)
Q Consensus 739 ~ 739 (909)
|
T Consensus 403 ~ 403 (443)
T PF04053_consen 403 G 403 (443)
T ss_dssp T
T ss_pred c
Confidence 3
No 274
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=94.29 E-value=0.048 Score=33.70 Aligned_cols=26 Identities=12% Similarity=0.180 Sum_probs=17.4
Q ss_pred CCCCCchHHHHHHHHhhhcCChHHHH
Q 002549 634 IPFEDLSIYVDIIDAYGRLKLWQKAE 659 (909)
Q Consensus 634 ~~~~~~~~~~~l~~~~~~~~~~~~A~ 659 (909)
+.|+++.++..++.+|...|++++|+
T Consensus 8 ~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 8 LNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 56666666666666666666666664
No 275
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=94.17 E-value=0.82 Score=38.95 Aligned_cols=48 Identities=19% Similarity=0.096 Sum_probs=22.5
Q ss_pred CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHC-CCCCCHHHHHHHHHH
Q 002549 218 QPDLWTYNAMISVYGRCGLFEKAEQLFKELESK-GFFPDAVTYNSLLYA 265 (909)
Q Consensus 218 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~~~ll~~ 265 (909)
.|+..+..+++.+|+..|++..|+++.+...+. +++.+..+|..|+.-
T Consensus 49 ~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 49 YPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 344455555555555555555555555444332 333344444444433
No 276
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=94.08 E-value=0.089 Score=32.53 Aligned_cols=31 Identities=26% Similarity=0.569 Sum_probs=17.6
Q ss_pred hHHHHHHHhhccCCHHHHHHHHHHHHHcCCCCC
Q 002549 816 IWNSMLKLYTGIEDFKKTIQVYQEIQEADLQPD 848 (909)
Q Consensus 816 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 848 (909)
+|..++.+|...|++++|++.|+++++ ++|+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE--LDPD 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH--HCcC
Confidence 355555566666666666666666666 5554
No 277
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.08 E-value=1.4 Score=39.84 Aligned_cols=90 Identities=7% Similarity=-0.032 Sum_probs=49.1
Q ss_pred HHHHhccCchHHHHHHHHHHHHCCCCCCHH----hHHHHHHHhhccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 002549 786 SGLFCKGKRVRDVEAMVSEMKEAGFKPDLS----IWNSMLKLYTGIEDFKKTIQVYQEIQEADLQPDEDSFNTLIIMYCR 861 (909)
Q Consensus 786 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 861 (909)
...+..+|++++|+..++..+.. +.|.. +-.-|.......|.+++|+..++...+. .-.+.....-++++..
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~--t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~--~w~~~~~elrGDill~ 171 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQ--TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEE--SWAAIVAELRGDILLA 171 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHcc--chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccc--cHHHHHHHHhhhHHHH
Confidence 34455666666666666666541 22221 1222344555666666666666655441 1122334455666666
Q ss_pred cCChhhHHHHHHHHHHcC
Q 002549 862 DCRPEEGLSLMHEMRKLG 879 (909)
Q Consensus 862 ~g~~~~A~~~~~~~~~~~ 879 (909)
.|+.++|+.-|++..+.+
T Consensus 172 kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 172 KGDKQEARAAYEKALESD 189 (207)
T ss_pred cCchHHHHHHHHHHHHcc
Confidence 677777777766666543
No 278
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.70 E-value=6.1 Score=36.98 Aligned_cols=89 Identities=9% Similarity=0.067 Sum_probs=51.2
Q ss_pred CCHHHHHHHHHHHHh--cCCCch---HHHHHHHHHHHhccCchHHHHHHHHHHHHCCCCCCHHhHHH----HHHHhhc-c
Q 002549 758 GNIFEVKKIYHGMKA--AGYFPT---MYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDLSIWNS----MLKLYTG-I 827 (909)
Q Consensus 758 g~~~~a~~~~~~~~~--~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~----l~~~~~~-~ 827 (909)
.++++|+..|++.-+ .|-..+ ...+......-...+++.+|+.+|++.....+..+..-|.. +-.++|+ .
T Consensus 128 ~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~ 207 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLC 207 (288)
T ss_pred HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHh
Confidence 566667776666654 121121 22333344445678899999999999876433333333432 1122333 2
Q ss_pred -CCHHHHHHHHHHHHHcCCCCC
Q 002549 828 -EDFKKTIQVYQEIQEADLQPD 848 (909)
Q Consensus 828 -g~~~~A~~~~~~~~~~~~~p~ 848 (909)
.+.--+...+++-.+ +.|.
T Consensus 208 ~~D~v~a~~ALeky~~--~dP~ 227 (288)
T KOG1586|consen 208 KADEVNAQRALEKYQE--LDPA 227 (288)
T ss_pred cccHHHHHHHHHHHHh--cCCc
Confidence 566667777777777 7884
No 279
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.55 E-value=0.14 Score=32.17 Aligned_cols=26 Identities=15% Similarity=0.218 Sum_probs=20.4
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHH
Q 002549 851 SFNTLIIMYCRDCRPEEGLSLMHEMR 876 (909)
Q Consensus 851 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 876 (909)
++..|+.+|.+.|++++|++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46778888888888888888888855
No 280
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=93.47 E-value=0.7 Score=41.63 Aligned_cols=93 Identities=11% Similarity=0.057 Sum_probs=53.9
Q ss_pred HHHhhhcCChHHHHHHHHHHHhcCCCCC----hHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHh
Q 002549 646 IDAYGRLKLWQKAESLVGCLRQRCAPVD----RKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQALIV 721 (909)
Q Consensus 646 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 721 (909)
++-+...|++++|.+-|..+++.+.+.. ...|..-+.++.+.+.++.|++--.++++.+|. ....+..-..+|.+
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek 180 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEK 180 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHh
Confidence 3445566666666666666666543322 223333445666777777777777777776654 33333333445666
Q ss_pred cCchhhHHHHHHHHHhCC
Q 002549 722 DGRLNELYVVIQELQDMD 739 (909)
Q Consensus 722 ~g~~~~A~~~~~~~~~~~ 739 (909)
..++++|++=|+++.+..
T Consensus 181 ~ek~eealeDyKki~E~d 198 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILESD 198 (271)
T ss_pred hhhHHHHHHHHHHHHHhC
Confidence 666666666666665543
No 281
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.46 E-value=5.4 Score=42.84 Aligned_cols=154 Identities=11% Similarity=0.030 Sum_probs=81.6
Q ss_pred HHcCCHhHHHHHHH--HHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHhcccHHHHHHH
Q 002549 407 LRFNETNKAMMLYQ--EMVSNGFTPDQALYEIMIGVLGRENKGEEIRKVVRDMKELSGINMQEISSILVKGECYDHAAEI 484 (909)
Q Consensus 407 ~~~~~~~~A~~~~~--~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 484 (909)
.-.++++.+.++.+ ++.. . - +....+.++..+.+.|..+.|+++.. +|+.-+.+.++.|+.+.|.+.
T Consensus 272 v~~~d~~~v~~~i~~~~ll~-~-i-~~~~~~~i~~fL~~~G~~e~AL~~~~--------D~~~rFeLAl~lg~L~~A~~~ 340 (443)
T PF04053_consen 272 VLRGDFEEVLRMIAASNLLP-N-I-PKDQGQSIARFLEKKGYPELALQFVT--------DPDHRFELALQLGNLDIALEI 340 (443)
T ss_dssp HHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS---------HHHHHHHHHHCT-HHHHHHH
T ss_pred HHcCChhhhhhhhhhhhhcc-c-C-ChhHHHHHHHHHHHCCCHHHHHhhcC--------ChHHHhHHHHhcCCHHHHHHH
Confidence 34566666555543 1111 1 1 24446666777777777777776652 344455666666666666665
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhccCCc
Q 002549 485 LRSAIRNGIELDHEKLLSILSSYNVSGRHLEACELIEFVKQHASESTPPLTQAFIIMLCKAQKLDAALEEYSNAWGFGFF 564 (909)
Q Consensus 485 ~~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 564 (909)
.++ ..+...|..+.......|+.+.|.+.+....+ +..+.-.|.-.|+.+.-.++.+.+...+
T Consensus 341 a~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~-- 403 (443)
T PF04053_consen 341 AKE------LDDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG-- 403 (443)
T ss_dssp CCC------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT--
T ss_pred HHh------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc--
Confidence 332 34666777777777777777777777765432 3445556666666665555555554433
Q ss_pred ccchhhHHHHHHHHHhcccHHHHHHHHHH
Q 002549 565 SKSKTMYESLIHSCEYNERFAEASQVFSD 593 (909)
Q Consensus 565 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 593 (909)
-++....++...|+.++..+++.+
T Consensus 404 -----~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 404 -----DINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp ------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred -----CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 144444555555666666555543
No 282
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.43 E-value=2 Score=37.87 Aligned_cols=51 Identities=18% Similarity=0.016 Sum_probs=32.8
Q ss_pred cCChhhHHHHHHHHHHcCCCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhc
Q 002549 616 MDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQR 668 (909)
Q Consensus 616 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 668 (909)
.++.+++..+++-+.. +.|.....-..-+..+...|+|.+|+.+|+.+.+.
T Consensus 23 ~~~~~D~e~lL~ALrv--LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 23 LGDPDDAEALLDALRV--LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred cCChHHHHHHHHHHHH--hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 3344444444444433 56666666667777777788888888888887654
No 283
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=93.27 E-value=0.4 Score=46.88 Aligned_cols=93 Identities=12% Similarity=0.144 Sum_probs=63.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCc-hHHHHHHHHHHHhccCchHHHHHHHHHHHHCCCCCCH--HhHHHHHHHhhc
Q 002549 750 MLDAFARSGNIFEVKKIYHGMKAAGYFP-TMYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDL--SIWNSMLKLYTG 826 (909)
Q Consensus 750 l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~ 826 (909)
-.+-|.++|++++|+.+|...... .| |++.+..-..+|.+..++..|+.-...++.. . +. -.|+--+.+-..
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL--d-~~Y~KAYSRR~~AR~~ 177 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL--D-KLYVKAYSRRMQARES 177 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh--h-HHHHHHHHHHHHHHHH
Confidence 456778888888888888777653 35 7777777777888888888777777776641 1 22 224444444445
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCh
Q 002549 827 IEDFKKTIQVYQEIQEADLQPDE 849 (909)
Q Consensus 827 ~g~~~~A~~~~~~~~~~~~~p~~ 849 (909)
.|+..+|.+-++.+++ +.|++
T Consensus 178 Lg~~~EAKkD~E~vL~--LEP~~ 198 (536)
T KOG4648|consen 178 LGNNMEAKKDCETVLA--LEPKN 198 (536)
T ss_pred HhhHHHHHHhHHHHHh--hCccc
Confidence 5777788888888887 77763
No 284
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.13 E-value=5.9 Score=36.08 Aligned_cols=91 Identities=10% Similarity=0.028 Sum_probs=47.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCch--HHHHHHHHHHHhccCchHHHHHHHHHHHHCCCCCCHHhHHHHHHHhhccC
Q 002549 751 LDAFARSGNIFEVKKIYHGMKAAGYFPT--MYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDLSIWNSMLKLYTGIE 828 (909)
Q Consensus 751 ~~~~~~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 828 (909)
...+...|++++|..-++..+......+ ..+--.|.......|.+|+|+..++.....++ .......-+..+...|
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg 173 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKG 173 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcC
Confidence 3445555566666555555553211111 11122334455566777777777666654221 1122333455666777
Q ss_pred CHHHHHHHHHHHHHc
Q 002549 829 DFKKTIQVYQEIQEA 843 (909)
Q Consensus 829 ~~~~A~~~~~~~~~~ 843 (909)
+-++|+..|++.++.
T Consensus 174 ~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 174 DKQEARAAYEKALES 188 (207)
T ss_pred chHHHHHHHHHHHHc
Confidence 777777777777763
No 285
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.04 E-value=5.9 Score=34.83 Aligned_cols=84 Identities=14% Similarity=0.196 Sum_probs=36.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 002549 261 SLLYAFAREGNVEKVKEISENMLKMGFGKDEMTYNTIIHMYGKQGQHDVALQLYRDMKLSGRNPDVVTYTVLIDSLGKAN 340 (909)
Q Consensus 261 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 340 (909)
.++..+.+.+.+......++.+.+.+ ..+...++.++..|++.+ .....+.++. .++......++..|.+.+
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~ 83 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAK 83 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcC
Confidence 34444444444555555555554444 244445555555555432 2222232221 112223333445555555
Q ss_pred CHHHHHHHHHHH
Q 002549 341 KISEAANVMSEM 352 (909)
Q Consensus 341 ~~~~A~~~~~~~ 352 (909)
.++++.-++..+
T Consensus 84 l~~~~~~l~~k~ 95 (140)
T smart00299 84 LYEEAVELYKKD 95 (140)
T ss_pred cHHHHHHHHHhh
Confidence 555555555444
No 286
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=93.04 E-value=0.15 Score=31.38 Aligned_cols=26 Identities=15% Similarity=0.521 Sum_probs=12.8
Q ss_pred HHHHHHHhhccCCHHHHHHHHHHHHH
Q 002549 817 WNSMLKLYTGIEDFKKTIQVYQEIQE 842 (909)
Q Consensus 817 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 842 (909)
|..++.+|...|++++|++.|+++++
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34444455555555555555555555
No 287
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.01 E-value=0.17 Score=31.81 Aligned_cols=27 Identities=22% Similarity=0.485 Sum_probs=22.1
Q ss_pred hHHHHHHHhhccCCHHHHHHHHHHHHH
Q 002549 816 IWNSMLKLYTGIEDFKKTIQVYQEIQE 842 (909)
Q Consensus 816 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 842 (909)
+|..|+..|...|++++|+++|++++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 467888999999999999999999665
No 288
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=92.70 E-value=1.3 Score=40.64 Aligned_cols=97 Identities=7% Similarity=0.047 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHhccCchHHHHHHHHHHHHCCCCCCH--HhHHHHHHHhhccCCHHHHHHHHHHHHHcCCCC---ChhhHH
Q 002549 779 MYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDL--SIWNSMLKLYTGIEDFKKTIQVYQEIQEADLQP---DEDSFN 853 (909)
Q Consensus 779 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~~~ 853 (909)
...+..+++.|.+.|+.++|++.+.++.+....|.. ..+..++..+...|++..+.....++...--.+ +...-.
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl 115 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 356778888888888888888888888775444444 346677777788888888888888876521112 222222
Q ss_pred H--HHHHHHhcCChhhHHHHHHHH
Q 002549 854 T--LIIMYCRDCRPEEGLSLMHEM 875 (909)
Q Consensus 854 ~--l~~~~~~~g~~~~A~~~~~~~ 875 (909)
. -+-.+...+++.+|-+.|-..
T Consensus 116 k~~~gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 116 KVYEGLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHHHHHhchHHHHHHHHHcc
Confidence 2 223334567777777777664
No 289
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=92.55 E-value=5.7 Score=33.43 Aligned_cols=61 Identities=16% Similarity=0.270 Sum_probs=27.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 002549 295 NTIIHMYGKQGQHDVALQLYRDMKLSGRNPDVVTYTVLIDSLGKANKISEAANVMSEMLDAS 356 (909)
Q Consensus 295 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 356 (909)
..-++.+...|.-|.-.+++..+.+.+ .+++.....+..+|.+.|+..++.+++.+.-+.|
T Consensus 90 D~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 90 DLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 334444455555555555555544322 3455555555555555555555555555555544
No 290
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.46 E-value=21 Score=39.77 Aligned_cols=87 Identities=17% Similarity=0.082 Sum_probs=42.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 002549 297 IIHMYGKQGQHDVALQLYRDMKLSGRNPDVVTYTVLIDSLGKANK--ISEAANVMSEMLDASVKPTLRTYSALICGYAKA 374 (909)
Q Consensus 297 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 374 (909)
+++-+...+.+..|+++-.-+...-..- ...|.....-+.+..+ -+++++..++=...-. .+..+|..+..-....
T Consensus 443 vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~-~~~iSy~~iA~~Ay~~ 520 (829)
T KOG2280|consen 443 VIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL-TPGISYAAIARRAYQE 520 (829)
T ss_pred hhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcccC-CCceeHHHHHHHHHhc
Confidence 4555666667777777665554211111 3445555555554421 1222222222222111 2344566666666667
Q ss_pred CCHHHHHHHHH
Q 002549 375 GNRLEAEKTFY 385 (909)
Q Consensus 375 g~~~~a~~~~~ 385 (909)
|+.+-|..+++
T Consensus 521 GR~~LA~kLle 531 (829)
T KOG2280|consen 521 GRFELARKLLE 531 (829)
T ss_pred CcHHHHHHHHh
Confidence 77777766654
No 291
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=91.94 E-value=32 Score=40.72 Aligned_cols=134 Identities=22% Similarity=0.250 Sum_probs=67.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH----HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 002549 295 NTIIHMYGKQGQHDVALQLYRDMKLSGRNPDVVTYTVLI----DSLGKANKISEAANVMSEMLDASVKPTLRTYSALICG 370 (909)
Q Consensus 295 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li----~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 370 (909)
.-.++.--+.|.+++|+.++ .|+...+..+. .-+.+.+.+++|.-.|+..-+ ....+.+
T Consensus 912 ~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a 974 (1265)
T KOG1920|consen 912 PECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKA 974 (1265)
T ss_pred HHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHH
Confidence 33334444555555555544 24444443333 333445666666665555421 1233556
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHH
Q 002549 371 YAKAGNRLEAEKTFYCMRRSGIRPDH--LAYSVMLDIFLRFNETNKAMMLYQEMVSNGFTPDQALYEIMIGVLGRENKGE 448 (909)
Q Consensus 371 ~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 448 (909)
|...|+|.+|..+..++... .+. .+-..|+.-+...++.-+|-++..+.... | .-.+..||+...++
T Consensus 975 ~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd---~-----~~av~ll~ka~~~~ 1043 (1265)
T KOG1920|consen 975 YKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYLSD---P-----EEAVALLCKAKEWE 1043 (1265)
T ss_pred HHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC---H-----HHHHHHHhhHhHHH
Confidence 66667777777666655421 121 12245556666667766666666665432 1 12233455555566
Q ss_pred HHHHHHHH
Q 002549 449 EIRKVVRD 456 (909)
Q Consensus 449 ~a~~~~~~ 456 (909)
+|.++...
T Consensus 1044 eAlrva~~ 1051 (1265)
T KOG1920|consen 1044 EALRVASK 1051 (1265)
T ss_pred HHHHHHHh
Confidence 66555443
No 292
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=91.81 E-value=3.8 Score=36.77 Aligned_cols=32 Identities=25% Similarity=0.101 Sum_probs=20.9
Q ss_pred hhHHHHHHHHHHcCCCCCCchHHHHHHHHhhhcC
Q 002549 620 ETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLK 653 (909)
Q Consensus 620 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 653 (909)
++|+.-|++++. ++|+...++..++++|...+
T Consensus 52 edAisK~eeAL~--I~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 52 EDAISKFEEALK--INPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--cCCchHHHHHHHHHHHHHHH
Confidence 344555666666 78888888888888876654
No 293
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=91.74 E-value=29 Score=39.76 Aligned_cols=24 Identities=13% Similarity=0.178 Sum_probs=15.2
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHH
Q 002549 854 TLIIMYCRDCRPEEGLSLMHEMRK 877 (909)
Q Consensus 854 ~l~~~~~~~g~~~~A~~~~~~~~~ 877 (909)
.|+.++...|++++|...+.++..
T Consensus 623 ~LA~l~~~~Gdl~~A~~~l~~~~~ 646 (894)
T COG2909 623 MLAELEFLRGDLDKALAQLDELER 646 (894)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Confidence 555666666666666666666655
No 294
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=91.66 E-value=2.3 Score=39.82 Aligned_cols=79 Identities=11% Similarity=0.123 Sum_probs=36.6
Q ss_pred CchHHHHHHHHHHHHCCCCCCHHh-HHHHHHHhhccCCHHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCChhhHHH
Q 002549 793 KRVRDVEAMVSEMKEAGFKPDLSI-WNSMLKLYTGIEDFKKTIQVYQEIQEADLQPDE-DSFNTLIIMYCRDCRPEEGLS 870 (909)
Q Consensus 793 g~~~~A~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~ 870 (909)
.+++.|+..+.+++. +.|...+ |..=+-++.+..+++.+.+-..++++ +.|+. .....++.++.....+++|+.
T Consensus 24 k~y~~ai~~y~raI~--~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~eaI~ 99 (284)
T KOG4642|consen 24 KRYDDAIDCYSRAIC--INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYDEAIK 99 (284)
T ss_pred hhhchHHHHHHHHHh--cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccccHHHH
Confidence 344444444444443 3444422 22223333344455555555555555 55543 444444545554555555555
Q ss_pred HHHHH
Q 002549 871 LMHEM 875 (909)
Q Consensus 871 ~~~~~ 875 (909)
.+.+.
T Consensus 100 ~Lqra 104 (284)
T KOG4642|consen 100 VLQRA 104 (284)
T ss_pred HHHHH
Confidence 55544
No 295
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.61 E-value=12 Score=35.16 Aligned_cols=20 Identities=0% Similarity=-0.032 Sum_probs=10.9
Q ss_pred HhcCchhhHHHHHHHHHhCC
Q 002549 720 IVDGRLNELYVVIQELQDMD 739 (909)
Q Consensus 720 ~~~g~~~~A~~~~~~~~~~~ 739 (909)
++.+++.+|+.+|++.....
T Consensus 165 a~leqY~~Ai~iyeqva~~s 184 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSS 184 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 34555666666665555443
No 296
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.47 E-value=27 Score=38.97 Aligned_cols=107 Identities=17% Similarity=0.119 Sum_probs=60.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCchhhHHHHHHHHHhCCCCccHHHHHHHHHHHHh
Q 002549 677 WNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQALIVDGRLNELYVVIQELQDMDFKISKSSILLMLDAFAR 756 (909)
Q Consensus 677 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 756 (909)
.+.-+..++..|+..+|.++-.+. --|+-..|-.-+.+++..++|++-.++-+... ++..|.-...+|.+
T Consensus 687 l~dTv~~li~~g~~k~a~ql~~~F----kipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~ 756 (829)
T KOG2280|consen 687 LHDTVTTLILIGQNKRAEQLKSDF----KIPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLK 756 (829)
T ss_pred HHHHHHHHHHccchHHHHHHHHhc----CCcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHh
Confidence 344444555667777776665554 34565566566666666666666555444322 23444445666777
Q ss_pred cCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccCchHHHHHHH
Q 002549 757 SGNIFEVKKIYHGMKAAGYFPTMYLYRVMSGLFCKGKRVRDVEAMV 802 (909)
Q Consensus 757 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 802 (909)
.|+.++|.+++-++... .-.+.+|.+.|.+.+|.++-
T Consensus 757 ~~n~~EA~KYiprv~~l---------~ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 757 QGNKDEAKKYIPRVGGL---------QEKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred cccHHHHhhhhhccCCh---------HHHHHHHHHhccHHHHHHHH
Confidence 77777776666554321 03455566666666666543
No 297
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=91.47 E-value=0.53 Score=28.96 Aligned_cols=30 Identities=27% Similarity=0.384 Sum_probs=19.0
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 002549 676 VWNALIKAYAASGCYERARAVFNTMMRDGP 705 (909)
Q Consensus 676 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 705 (909)
+|..++.+|...|++++|+..|+++++..|
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 456666666677777777777777666443
No 298
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=91.41 E-value=0.74 Score=41.10 Aligned_cols=110 Identities=18% Similarity=0.224 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcc---C-------chHHHHHHHHHHHHCCCCCCH-HhHHHHHHHhhccC
Q 002549 760 IFEVKKIYHGMKAAGYFPTMYLYRVMSGLFCKG---K-------RVRDVEAMVSEMKEAGFKPDL-SIWNSMLKLYTGIE 828 (909)
Q Consensus 760 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g-------~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g 828 (909)
++.|.+.++...... +.|...++....++... . .+++|++-|++++. +.|+. .++..++.+|..++
T Consensus 7 FE~ark~aea~y~~n-P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~--I~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN-PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALK--INPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHHHH
Confidence 455666666644432 23445444444444322 2 23445555566665 67776 67777888876543
Q ss_pred ----C-------HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCC
Q 002549 829 ----D-------FKKTIQVYQEIQEADLQPDEDSFNTLIIMYCRDCRPEEGLSLMHEMRKLGL 880 (909)
Q Consensus 829 ----~-------~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 880 (909)
+ +++|.+.|+++.+ .+|++..|+.-.... .+|=++..+..+.+.
T Consensus 84 ~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~------~kap~lh~e~~~~~~ 138 (186)
T PF06552_consen 84 FLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMA------AKAPELHMEIHKQGL 138 (186)
T ss_dssp HH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHH------HTHHHHHHHHHHSSS
T ss_pred hhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHH------HhhHHHHHHHHHHHh
Confidence 2 5666667777776 788888877655554 346677766665433
No 299
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=91.39 E-value=1.9 Score=41.28 Aligned_cols=71 Identities=18% Similarity=0.232 Sum_probs=41.5
Q ss_pred CCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccC----------------chHHHHHHHHHHHHCCCCCCHHhHHHHH
Q 002549 758 GNIFEVKKIYHGMKAAGYFPTMYLYRVMSGLFCKGK----------------RVRDVEAMVSEMKEAGFKPDLSIWNSML 821 (909)
Q Consensus 758 g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g----------------~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 821 (909)
+.++=....++.|.+.|+.-|..+|+.|++.+-+.. +-+-+++++++|...|+-||..+-..|+
T Consensus 86 ~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lv 165 (406)
T KOG3941|consen 86 THVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILV 165 (406)
T ss_pred chHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHH
Confidence 344444455556666666666666666666554321 2234566666666666666666666666
Q ss_pred HHhhccC
Q 002549 822 KLYTGIE 828 (909)
Q Consensus 822 ~~~~~~g 828 (909)
+++.+.|
T Consensus 166 n~FGr~~ 172 (406)
T KOG3941|consen 166 NAFGRWN 172 (406)
T ss_pred HHhcccc
Confidence 6666554
No 300
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.25 E-value=9.8 Score=33.69 Aligned_cols=60 Identities=17% Similarity=0.068 Sum_probs=38.0
Q ss_pred HHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 002549 644 DIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDG 704 (909)
Q Consensus 644 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 704 (909)
.++..-...++.+++..++..+.-. .|..+..-..-+..++..|+|.+|..+|+.+.+..
T Consensus 15 e~~~~al~~~~~~D~e~lL~ALrvL-RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~ 74 (160)
T PF09613_consen 15 EVLSVALRLGDPDDAEALLDALRVL-RPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA 74 (160)
T ss_pred HHHHHHHccCChHHHHHHHHHHHHh-CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC
Confidence 3444455666777888888777654 23334444444556677788888888888876543
No 301
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=91.14 E-value=1.9 Score=42.27 Aligned_cols=77 Identities=10% Similarity=0.139 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHhccCchHHHHHHHHHHHHCCCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHH-----cCCCCChhhHH
Q 002549 779 MYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDLSIWNSMLKLYTGIEDFKKTIQVYQEIQE-----ADLQPDEDSFN 853 (909)
Q Consensus 779 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~~~ 853 (909)
..++..++..+..+|+.+.+.+.++++.+.. +-|...|..++.+|...|+...|+..|+++.+ .|+.|...+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 4555666666777777777777777766521 22556677777777777777777777766654 25555444433
Q ss_pred HHH
Q 002549 854 TLI 856 (909)
Q Consensus 854 ~l~ 856 (909)
.+.
T Consensus 232 ~y~ 234 (280)
T COG3629 232 LYE 234 (280)
T ss_pred HHH
Confidence 333
No 302
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=90.96 E-value=2.5 Score=38.78 Aligned_cols=29 Identities=24% Similarity=0.214 Sum_probs=16.6
Q ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHhC
Q 002549 569 TMYESLIHSCEYNERFAEASQVFSDMRFY 597 (909)
Q Consensus 569 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 597 (909)
..+..+..-|.+.|+.++|++.|.++.+.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~ 65 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDY 65 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhh
Confidence 34555555566666666666666665543
No 303
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=90.93 E-value=0.27 Score=30.30 Aligned_cols=26 Identities=15% Similarity=0.540 Sum_probs=15.2
Q ss_pred HHHHHHHhhccCCHHHHHHHHHHHHH
Q 002549 817 WNSMLKLYTGIEDFKKTIQVYQEIQE 842 (909)
Q Consensus 817 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 842 (909)
|..++..|...|++++|.+.|++.++
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44455555556666666666666655
No 304
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=90.69 E-value=2.6 Score=41.35 Aligned_cols=77 Identities=17% Similarity=0.160 Sum_probs=57.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH-----cCCCCChHHHHHHH
Q 002549 82 MLATILAVLGKANQENLAVETFMRAESAVDDTVQVYNAMMGIYARNGRFQKVQELLDLMRK-----RGCEPDLVSFNTLI 156 (909)
Q Consensus 82 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~-----~g~~~~~~~~~~ll 156 (909)
++..++..+..+|+++.+.+.+.+.....|.+...|..++.+|.+.|+...|+..|+++.+ .|+.|...+.....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~ 234 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYE 234 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHH
Confidence 4556777777788888888888877777777888888888888888888888888877764 46666666555554
Q ss_pred HH
Q 002549 157 NA 158 (909)
Q Consensus 157 ~~ 158 (909)
..
T Consensus 235 ~~ 236 (280)
T COG3629 235 EI 236 (280)
T ss_pred HH
Confidence 44
No 305
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=90.38 E-value=0.76 Score=28.16 Aligned_cols=30 Identities=33% Similarity=0.524 Sum_probs=17.9
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 002549 676 VWNALIKAYAASGCYERARAVFNTMMRDGP 705 (909)
Q Consensus 676 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 705 (909)
.|..++.++...|++++|++.|+++++..|
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 455566666666666666666666666443
No 306
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=90.30 E-value=13 Score=33.37 Aligned_cols=98 Identities=18% Similarity=0.260 Sum_probs=45.6
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCC
Q 002549 384 FYCMRRSGIRPDHLAYSVMLDIFLRFNETNKAMMLYQEMVSNGFTPDQALYEIMIGVLGRENKGEEIRKVVRDMKELSGI 463 (909)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 463 (909)
++.+.+.+++|+...+..+++.+.+.|++... ..++..++-+|.......+-.+. +....+.++--+|.+.-+.
T Consensus 17 irSl~~~~i~~~~~L~~lli~lLi~~~~~~~L----~qllq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkRL~~ 90 (167)
T PF07035_consen 17 IRSLNQHNIPVQHELYELLIDLLIRNGQFSQL----HQLLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKRLGT 90 (167)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH----HHHHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHHhhh
Confidence 33444455555555666666666665554432 22333344444433333322221 1223344444444443333
Q ss_pred ChHHHHHHHHhcccHHHHHHHHHH
Q 002549 464 NMQEISSILVKGECYDHAAEILRS 487 (909)
Q Consensus 464 ~~~~~~~~~~~~~~~~~a~~~~~~ 487 (909)
..+.+..++...|++-+|+...+.
T Consensus 91 ~~~~iievLL~~g~vl~ALr~ar~ 114 (167)
T PF07035_consen 91 AYEEIIEVLLSKGQVLEALRYARQ 114 (167)
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHH
Confidence 444555555666666666655554
No 307
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=89.84 E-value=29 Score=36.50 Aligned_cols=146 Identities=8% Similarity=0.040 Sum_probs=72.9
Q ss_pred CcccHHHHHHHHHhcCchhhHHHHHHHHHhCCCCc---cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCch--HHHH
Q 002549 708 TVDSINGLLQALIVDGRLNELYVVIQELQDMDFKI---SKSSILLMLDAFARSGNIFEVKKIYHGMKAAGYFPT--MYLY 782 (909)
Q Consensus 708 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~--~~~~ 782 (909)
...+|..++..+.+.|+++.|...+.++.+.+... .+.+...-+......|+-.+|...++...+..+... ....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~ 224 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISN 224 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccH
Confidence 44556667777777777777777777776644221 233333445566667777777777776665222111 0000
Q ss_pred HHHHHHHhc--cCchHHHHHHHHHHHHCCCCCCHHhHHHHHHHhhcc------CCHHHHHHHHHHHHHcCCCCCh-hhHH
Q 002549 783 RVMSGLFCK--GKRVRDVEAMVSEMKEAGFKPDLSIWNSMLKLYTGI------EDFKKTIQVYQEIQEADLQPDE-DSFN 853 (909)
Q Consensus 783 ~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~------g~~~~A~~~~~~~~~~~~~p~~-~~~~ 853 (909)
..+...+.. ............. ..-...+..++..+... ++.+++...|+++.+ +.|+. .++.
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~--~~~~~~k~~~ 296 (352)
T PF02259_consen 225 AELKSGLLESLEVISSTNLDKESK------ELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATK--LDPSWEKAWH 296 (352)
T ss_pred HHHhhccccccccccccchhhhhH------HHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHH--hChhHHHHHH
Confidence 011000000 0000000000000 00001222333333333 788999999999999 88854 6777
Q ss_pred HHHHHHHh
Q 002549 854 TLIIMYCR 861 (909)
Q Consensus 854 ~l~~~~~~ 861 (909)
.++..+.+
T Consensus 297 ~~a~~~~~ 304 (352)
T PF02259_consen 297 SWALFNDK 304 (352)
T ss_pred HHHHHHHH
Confidence 77766554
No 308
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=89.18 E-value=81 Score=40.82 Aligned_cols=150 Identities=12% Similarity=0.107 Sum_probs=96.8
Q ss_pred HHHHHHHHcCCHhHHHHHHHHH----HHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 002549 226 AMISVYGRCGLFEKAEQLFKEL----ESKGFFPDAVTYNSLLYAFAREGNVEKVKEISENMLKMGFGKDEMTYNTIIHMY 301 (909)
Q Consensus 226 ~li~~~~~~g~~~~A~~~~~~m----~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 301 (909)
++..+-.+++.+.+|...++.- .+.. .....|-.+...|...+++|....+...... +...+. -|-..
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~--~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~sl~~-qil~~ 1459 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKE--TEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPSLYQ-QILEH 1459 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhH--HHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----CccHHH-HHHHH
Confidence 5566778899999999999883 2221 1223344445589999999988877764211 222333 34456
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHHcCCHHHH
Q 002549 302 GKQGQHDVALQLYRDMKLSGRNPDVVTYTVLIDSLGKANKISEAANVMSEMLDASVKPTLRTYSAL-ICGYAKAGNRLEA 380 (909)
Q Consensus 302 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~a 380 (909)
...|++..|...|+.+.+.+ ++...+++-++......|.++..+...+-.... ..+....++.+ +.+-.+.++++..
T Consensus 1460 e~~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~ 1537 (2382)
T KOG0890|consen 1460 EASGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLL 1537 (2382)
T ss_pred HhhccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhh
Confidence 67899999999999999875 233667777777777778888777766555433 22333334333 3444677777777
Q ss_pred HHHHH
Q 002549 381 EKTFY 385 (909)
Q Consensus 381 ~~~~~ 385 (909)
+..+.
T Consensus 1538 e~~l~ 1542 (2382)
T KOG0890|consen 1538 ESYLS 1542 (2382)
T ss_pred hhhhh
Confidence 66654
No 309
>PRK09687 putative lyase; Provisional
Probab=88.87 E-value=27 Score=34.99 Aligned_cols=235 Identities=15% Similarity=0.060 Sum_probs=117.4
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCHHHHHHHHHHHHHcCCh----hHHHHHHHHHHHcCCCCChHHH
Q 002549 77 SPNARMLATILAVLGKANQENLAVETFMRAESAVDDTVQVYNAMMGIYARNGRF----QKVQELLDLMRKRGCEPDLVSF 152 (909)
Q Consensus 77 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~a~~~~~~m~~~g~~~~~~~~ 152 (909)
.++..+....+..+...|..+ +......+.. ..++.....-+.++...|.. +++...+..+... .|+...-
T Consensus 34 d~d~~vR~~A~~aL~~~~~~~-~~~~l~~ll~--~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR 108 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGGQD-VFRLAIELCS--SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVR 108 (280)
T ss_pred CCCHHHHHHHHHHHHhcCcch-HHHHHHHHHh--CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHH
Confidence 345555555666666655432 2222222222 34566666667777777764 3566666666433 3566655
Q ss_pred HHHHHHHHHcCCCCc---hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 002549 153 NTLINARLRSGAMVP---NLGVDLLNEVRRSGLRPDIITYNTIISACSRESNLEEAMKVYGDLEAHNCQPDLWTYNAMIS 229 (909)
Q Consensus 153 ~~ll~~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 229 (909)
...+.++...+.... ..+...+.... ..++..+-...+.++.+.++ ..|...+-.+.+. +|...-...+.
T Consensus 109 ~~A~~aLG~~~~~~~~~~~~a~~~l~~~~---~D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~ 181 (280)
T PRK09687 109 ASAINATGHRCKKNPLYSPKIVEQSQITA---FDKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAF 181 (280)
T ss_pred HHHHHHHhcccccccccchHHHHHHHHHh---hCCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHH
Confidence 566666555432111 11222222222 23355555566666666665 4555555555542 34444444444
Q ss_pred HHHHcC-CHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 002549 230 VYGRCG-LFEKAEQLFKELESKGFFPDAVTYNSLLYAFAREGNVEKVKEISENMLKMGFGKDEMTYNTIIHMYGKQGQHD 308 (909)
Q Consensus 230 ~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 308 (909)
++++.+ ...++...+..+... +|..+-...+.++.+.++. .+...+-...+.+ + .....+.++...|..
T Consensus 182 aLg~~~~~~~~~~~~L~~~L~D---~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~- 251 (280)
T PRK09687 182 ALNSNKYDNPDIREAFVAMLQD---KNEEIRIEAIIGLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELGDK- 251 (280)
T ss_pred HHhcCCCCCHHHHHHHHHHhcC---CChHHHHHHHHHHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-
Confidence 444432 233555555555532 3555566666666666663 3444444444322 1 233455566666663
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 002549 309 VALQLYRDMKLSGRNPDVVTYTVLIDS 335 (909)
Q Consensus 309 ~A~~~~~~~~~~~~~~~~~~~~~li~~ 335 (909)
+|...+..+.+. .||...-...+.+
T Consensus 252 ~a~p~L~~l~~~--~~d~~v~~~a~~a 276 (280)
T PRK09687 252 TLLPVLDTLLYK--FDDNEIITKAIDK 276 (280)
T ss_pred hHHHHHHHHHhh--CCChhHHHHHHHH
Confidence 466666666543 3455444444433
No 310
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=88.51 E-value=35 Score=35.73 Aligned_cols=65 Identities=14% Similarity=0.178 Sum_probs=42.1
Q ss_pred ChHhHHHH---HHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHH-hcCchhhHHHHHHHHHh
Q 002549 673 DRKVWNAL---IKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQALI-VDGRLNELYVVIQELQD 737 (909)
Q Consensus 673 ~~~~~~~l---~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~ 737 (909)
|...|-++ +..+.+.|.+..|.++.+-++..+|..|......+|..|+ +.++++--+++.+....
T Consensus 99 NR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 99 NRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 44444444 4566677888888888888888776656655555666554 56666666666665443
No 311
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=88.50 E-value=30 Score=34.97 Aligned_cols=127 Identities=15% Similarity=0.300 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--cC----CHHHHHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCC---
Q 002549 274 KVKEISENMLKMGFGKDEMTYNTIIHMYGK--QG----QHDVALQLYRDMKLSGR---NPDVVTYTVLIDSLGKANK--- 341 (909)
Q Consensus 274 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g----~~~~A~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~--- 341 (909)
+...+++.+.+.|+..+..+|-+-.-.... .. ....|..+|+.|++... .++..++..++.. ..++
T Consensus 80 ~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~ 157 (297)
T PF13170_consen 80 EVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEE 157 (297)
T ss_pred HHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHH
Confidence 344555666666666655444432222211 11 13456666777766543 2344455555443 2222
Q ss_pred -HHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHHcCC--HHHHHHHHHHHHHCCCCCCHHHHHHH
Q 002549 342 -ISEAANVMSEMLDASVKPTL--RTYSALICGYAKAGN--RLEAEKTFYCMRRSGIRPDHLAYSVM 402 (909)
Q Consensus 342 -~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~l 402 (909)
.+.+...|+.+.+.|...+. ...+.++...-.... ...+.++++.+.+.|+++....|..+
T Consensus 158 l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 158 LAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 23344555555554443322 122222222111111 33455555566666655555554443
No 312
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=88.30 E-value=19 Score=32.43 Aligned_cols=24 Identities=13% Similarity=0.142 Sum_probs=15.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Q 002549 677 WNALIKAYAASGCYERARAVFNTM 700 (909)
Q Consensus 677 ~~~l~~~~~~~g~~~~A~~~~~~~ 700 (909)
+..++..+...|++-+|+++.+..
T Consensus 92 ~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 92 YEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHc
Confidence 344556666777777777776664
No 313
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=88.19 E-value=37 Score=35.65 Aligned_cols=64 Identities=9% Similarity=-0.023 Sum_probs=29.8
Q ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHhhcCChhhHHHHHHHHHH
Q 002549 568 KTMYESLIHSCEYNERFAEASQVFSDMRFYNIEP---SEDLYRSMVVAYCKMDFPETAHFIADQAEK 631 (909)
Q Consensus 568 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 631 (909)
..+|..++..+.+.|+++.|...+..+...+..+ .+.........+...|+.++|+..++..+.
T Consensus 146 ~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 146 AETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3445555555555555555555555554322111 223333334444445555555555544443
No 314
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=87.97 E-value=0.75 Score=27.91 Aligned_cols=26 Identities=15% Similarity=0.226 Sum_probs=17.1
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHH
Q 002549 852 FNTLIIMYCRDCRPEEGLSLMHEMRK 877 (909)
Q Consensus 852 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 877 (909)
+..++.++.+.|++++|.+.++++++
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 45566666666777777777766664
No 315
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=87.96 E-value=32 Score=34.73 Aligned_cols=115 Identities=18% Similarity=0.293 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHhcCCC---chHHHHHHHHHHHhccCc----hHHHHHHHHHHHHCCCCCCHH-hHHHHHHHhhc-cC--
Q 002549 760 IFEVKKIYHGMKAAGYF---PTMYLYRVMSGLFCKGKR----VRDVEAMVSEMKEAGFKPDLS-IWNSMLKLYTG-IE-- 828 (909)
Q Consensus 760 ~~~a~~~~~~~~~~~~~---p~~~~~~~l~~~~~~~g~----~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~-~g-- 828 (909)
...+..+|+.|++...- ++-..+..++.. .... .+..+.+++.+.+.|+..+.. -+.+-+-++.. ..
T Consensus 119 ~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~ 196 (297)
T PF13170_consen 119 IQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQE 196 (297)
T ss_pred HHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchH
Confidence 34567777777763211 222333333221 2222 245666777777777766542 23333333332 22
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHH
Q 002549 829 DFKKTIQVYQEIQEADLQPDEDSFNTLIIMYCRDCRPEEGLSLMHEMR 876 (909)
Q Consensus 829 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 876 (909)
...++.++++.+.+.|+++....|..+|-.-.-.+..++..+.+.++.
T Consensus 197 ~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~~~~~~~~~i~ev~ 244 (297)
T PF13170_consen 197 KVARVIELYNALKKNGVKIKYMHYPTLGLLALLEDPEEKIVEEIKEVI 244 (297)
T ss_pred HHHHHHHHHHHHHHcCCccccccccHHHHHHhcCCchHHHHHHHHHHH
Confidence 245778888888888877766666655543333333324444444443
No 316
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=87.69 E-value=0.025 Score=50.25 Aligned_cols=129 Identities=9% Similarity=0.124 Sum_probs=74.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccCchHHHHHHHHHHHHCCCCCCHHhHHHHHHHhhccCC
Q 002549 750 MLDAFARSGNIFEVKKIYHGMKAAGYFPTMYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDLSIWNSMLKLYTGIED 829 (909)
Q Consensus 750 l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 829 (909)
++..+.+.+.++....+++.+...+...+....+.++..|++.++.++.+++++. .+..-...++..|.+.|-
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~-------~~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT-------SNNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS-------SSSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc-------ccccCHHHHHHHHHhcch
Confidence 3445555666666777777777655445677777888888888777777776652 122333445566667777
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCH
Q 002549 830 FKKTIQVYQEIQEADLQPDEDSFNTLIIMYCRDCRPEEGLSLMHEMRKLGLEPKLDTYKSLISAFGKQQQL 900 (909)
Q Consensus 830 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 900 (909)
+++|.-+|.++-.. ...+..+...+++++|.++..+ .+++..|..+++.+...++.
T Consensus 86 ~~~a~~Ly~~~~~~---------~~al~i~~~~~~~~~a~e~~~~------~~~~~l~~~l~~~~l~~~~~ 141 (143)
T PF00637_consen 86 YEEAVYLYSKLGNH---------DEALEILHKLKDYEEAIEYAKK------VDDPELWEQLLKYCLDSKPF 141 (143)
T ss_dssp HHHHHHHHHCCTTH---------TTCSSTSSSTHCSCCCTTTGGG------CSSSHHHHHHHHHHCTSTCT
T ss_pred HHHHHHHHHHcccH---------HHHHHHHHHHccHHHHHHHHHh------cCcHHHHHHHHHHHHhcCcc
Confidence 77776666653220 0001123344555556544333 34577788888777766553
No 317
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=87.44 E-value=43 Score=35.61 Aligned_cols=97 Identities=13% Similarity=0.138 Sum_probs=62.8
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHhhccCCcccchhhHHHHHHHHHhc--ccHHHHHHHHHHHH-hCCCCCCHHHHH
Q 002549 531 TPPLTQAFIIMLCKAQKLDAALEEYSNAWGFGFFSKSKTMYESLIHSCEYN--ERFAEASQVFSDMR-FYNIEPSEDLYR 607 (909)
Q Consensus 531 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~m~-~~~~~p~~~~~~ 607 (909)
...+-..+...+.+.|-..+|...|..+...+ |++...+..+|..=..+ -+..-+..+|+.|. ..| .|+..|.
T Consensus 459 ~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lp--p~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg--~d~~lw~ 534 (568)
T KOG2396|consen 459 SVTLKSKYLDWAYESGGYKKARKVYKSLQELP--PFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG--ADSDLWM 534 (568)
T ss_pred eeehhHHHHHHHHHhcchHHHHHHHHHHHhCC--CccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC--CChHHHH
Confidence 34455566667777777788888888877764 66777776666442221 12556667777764 445 6667777
Q ss_pred HHHHHHhhcCChhhHHHHHHHHHH
Q 002549 608 SMVVAYCKMDFPETAHFIADQAEK 631 (909)
Q Consensus 608 ~l~~~~~~~~~~~~a~~~~~~~~~ 631 (909)
..+..-...|.++.+-.++.++.+
T Consensus 535 ~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 535 DYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred HHHHhhccCCCcccccHHHHHHHH
Confidence 766666677777777777766654
No 318
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=87.26 E-value=1.1 Score=29.14 Aligned_cols=28 Identities=32% Similarity=0.407 Sum_probs=22.9
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHH
Q 002549 850 DSFNTLIIMYCRDCRPEEGLSLMHEMRK 877 (909)
Q Consensus 850 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 877 (909)
.++++++.+|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4678888999999999999999888875
No 319
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=87.18 E-value=62 Score=37.10 Aligned_cols=49 Identities=27% Similarity=0.352 Sum_probs=29.9
Q ss_pred hccCCHHHHHHHHHHHHhcCCCC--------ChhhHHHHHHHHHhcCCHHHHHHHHH
Q 002549 508 NVSGRHLEACELIEFVKQHASES--------TPPLTQAFIIMLCKAQKLDAALEEYS 556 (909)
Q Consensus 508 ~~~~~~~~a~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~g~~~~A~~~~~ 556 (909)
.-.+++..+...++.+....... .+.+....+..+...|+++.|...|.
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 44677888888877776532111 12223333444556888999999887
No 320
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.01 E-value=4.4 Score=43.41 Aligned_cols=99 Identities=13% Similarity=0.096 Sum_probs=48.2
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccCchHHHHHHHHHHHHCCCCCCHHhHHHHHHHhhccCCHHHHH
Q 002549 755 ARSGNIFEVKKIYHGMKAAGYFPTMYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDLSIWNSMLKLYTGIEDFKKTI 834 (909)
Q Consensus 755 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 834 (909)
.+.|+++.|.++..+.. +..-|..|.++..+.|++..|.+.|..+.. |.+|+-.+...|+-+.-.
T Consensus 648 l~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~ 712 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLA 712 (794)
T ss_pred hhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHH
Confidence 34555555555544332 334566666666666666666666655543 334444444445444433
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcCChhhHHHHHHH
Q 002549 835 QVYQEIQEADLQPDEDSFNTLIIMYCRDCRPEEGLSLMHE 874 (909)
Q Consensus 835 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 874 (909)
.+.....+.| ..+..-.+|...|+++++.+++.+
T Consensus 713 ~la~~~~~~g------~~N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 713 VLASLAKKQG------KNNLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHHHHhhc------ccchHHHHHHHcCCHHHHHHHHHh
Confidence 3333333321 112222345555666666555544
No 321
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=86.93 E-value=20 Score=31.23 Aligned_cols=51 Identities=10% Similarity=-0.139 Sum_probs=31.7
Q ss_pred cCChhhHHHHHHHHHHcCCCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhc
Q 002549 616 MDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQR 668 (909)
Q Consensus 616 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 668 (909)
.++++++..+++.+.- +.|+...+-..-+..+...|+|.+|..+|+.+.+.
T Consensus 23 ~~d~~D~e~lLdALrv--LrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALRV--LRPNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHHH--hCCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 3444455544444433 56666666666667777777777777777777654
No 322
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=86.42 E-value=9 Score=36.10 Aligned_cols=86 Identities=20% Similarity=0.008 Sum_probs=45.8
Q ss_pred HhhcCChhhHHHHHHHHHHcCCCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHH
Q 002549 613 YCKMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYER 692 (909)
Q Consensus 613 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 692 (909)
|.....++.|+.-|.+++. ++|..+.-+..-+-.+.+.++|+.+..-..++++. .+..+.....+..+......+++
T Consensus 20 ~f~~k~y~~ai~~y~raI~--~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql-~~N~vk~h~flg~~~l~s~~~~e 96 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAIC--INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL-DPNLVKAHYFLGQWLLQSKGYDE 96 (284)
T ss_pred ccchhhhchHHHHHHHHHh--cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc-ChHHHHHHHHHHHHHHhhccccH
Confidence 3344445556655555554 55555555555555555555666555555555554 33333344444555555555555
Q ss_pred HHHHHHHHH
Q 002549 693 ARAVFNTMM 701 (909)
Q Consensus 693 A~~~~~~~~ 701 (909)
|+..+.++.
T Consensus 97 aI~~Lqra~ 105 (284)
T KOG4642|consen 97 AIKVLQRAY 105 (284)
T ss_pred HHHHHHHHH
Confidence 555555553
No 323
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=86.26 E-value=2.4 Score=41.69 Aligned_cols=89 Identities=17% Similarity=0.039 Sum_probs=42.9
Q ss_pred HHhhcCChhhHHHHHHHHHHcCCCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHH
Q 002549 612 AYCKMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYE 691 (909)
Q Consensus 612 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 691 (909)
-|.+.|.+++|+..|...+. +.|-++..+..-+.+|.+.+++..|+.-+..++.. ...-+.+|.--+.+--..|+..
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL-d~~Y~KAYSRR~~AR~~Lg~~~ 182 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL-DKLYVKAYSRRMQARESLGNNM 182 (536)
T ss_pred hhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh-hHHHHHHHHHHHHHHHHHhhHH
Confidence 34445555555555544443 44545555555555555555555555555554433 1112233333333333345555
Q ss_pred HHHHHHHHHHHc
Q 002549 692 RARAVFNTMMRD 703 (909)
Q Consensus 692 ~A~~~~~~~~~~ 703 (909)
+|.+-++..++.
T Consensus 183 EAKkD~E~vL~L 194 (536)
T KOG4648|consen 183 EAKKDCETVLAL 194 (536)
T ss_pred HHHHhHHHHHhh
Confidence 555555555553
No 324
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=85.93 E-value=0.55 Score=46.27 Aligned_cols=89 Identities=11% Similarity=0.073 Sum_probs=51.5
Q ss_pred ccCchHHHHHHHHHHHHCCCCCC-HHhHHHHHHHhhccCCHHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCChhhH
Q 002549 791 KGKRVRDVEAMVSEMKEAGFKPD-LSIWNSMLKLYTGIEDFKKTIQVYQEIQEADLQPDE-DSFNTLIIMYCRDCRPEEG 868 (909)
Q Consensus 791 ~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A 868 (909)
..|.+++|++.|...++. .|. ...|..-..++.+.++...|+.-+..+++ ++||. ..|-.-+.+....|+|++|
T Consensus 126 n~G~~~~ai~~~t~ai~l--np~~a~l~~kr~sv~lkl~kp~~airD~d~A~e--in~Dsa~~ykfrg~A~rllg~~e~a 201 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIEL--NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIE--INPDSAKGYKFRGYAERLLGNWEEA 201 (377)
T ss_pred cCcchhhhhccccccccc--CCchhhhcccccceeeeccCCchhhhhhhhhhc--cCcccccccchhhHHHHHhhchHHH
Confidence 345566666666666552 333 24444445556666666666666666666 66655 4455555555556666666
Q ss_pred HHHHHHHHHcCCCCC
Q 002549 869 LSLMHEMRKLGLEPK 883 (909)
Q Consensus 869 ~~~~~~~~~~~~~p~ 883 (909)
.+.+....+.+..+.
T Consensus 202 a~dl~~a~kld~dE~ 216 (377)
T KOG1308|consen 202 AHDLALACKLDYDEA 216 (377)
T ss_pred HHHHHHHHhccccHH
Confidence 666666665554444
No 325
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=85.69 E-value=73 Score=36.51 Aligned_cols=166 Identities=10% Similarity=0.108 Sum_probs=84.8
Q ss_pred HHHHHHHHHH-hcCCHHHHHHHHHHHHhcCCCCCHH-----HHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCHH
Q 002549 293 TYNTIIHMYG-KQGQHDVALQLYRDMKLSGRNPDVV-----TYTVLIDSLGKANKISEAANVMSEMLDA----SVKPTLR 362 (909)
Q Consensus 293 ~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~-----~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~ 362 (909)
++-.+...+. ...+++.|...+++.......++.. +...++..+.+.+... |...+++.++. +..+-..
T Consensus 61 ~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~ 139 (608)
T PF10345_consen 61 VRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYY 139 (608)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHH
Confidence 4444555554 5667777777776654332222222 1223445555555544 77777665542 1112222
Q ss_pred HHHHH-HHHHHHcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHH--HcCCHhHHHHHHHHHHHCC---------C
Q 002549 363 TYSAL-ICGYAKAGNRLEAEKTFYCMRRSG---IRPDHLAYSVMLDIFL--RFNETNKAMMLYQEMVSNG---------F 427 (909)
Q Consensus 363 ~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~--~~~~~~~A~~~~~~~~~~~---------~ 427 (909)
.|..+ +..+...++...|.+.++.+...- ..|-..++..++.+.. +.+..+++.+.++++.... .
T Consensus 140 ~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~ 219 (608)
T PF10345_consen 140 AFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVH 219 (608)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCC
Confidence 33333 222223367777777777766521 2233444444544443 3455566666666663321 1
Q ss_pred CCCHHHHHHHHHHH--hcCCCHHHHHHHHHHHHH
Q 002549 428 TPDQALYEIMIGVL--GRENKGEEIRKVVRDMKE 459 (909)
Q Consensus 428 ~~~~~~~~~ll~~~--~~~g~~~~a~~~~~~~~~ 459 (909)
.|-..+|..+++.+ ...|++..+...++.+.+
T Consensus 220 ~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~ 253 (608)
T PF10345_consen 220 IPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQ 253 (608)
T ss_pred cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 23455666666644 456777777766666554
No 326
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.65 E-value=6.4 Score=38.54 Aligned_cols=102 Identities=17% Similarity=0.217 Sum_probs=59.9
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCC--CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCC
Q 002549 181 GLRPDIITYNTIISACSRESNLEEAMKVYGDLEAHN---CQP--DLWTYNAMISVYGRCGLFEKAEQLFKELESKGFFPD 255 (909)
Q Consensus 181 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 255 (909)
|....+.+...++..-.....++.++.++-++.... ..| +.++|-.++ -.-++++++.++..=..-|+.||
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irll----lky~pq~~i~~l~npIqYGiF~d 134 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLL----LKYDPQKAIYTLVNPIQYGIFPD 134 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHH----HccChHHHHHHHhCcchhccccc
Confidence 444445555555555555566677776666665321 111 122222222 22356677777776677777777
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 002549 256 AVTYNSLLYAFAREGNVEKVKEISENMLKMG 286 (909)
Q Consensus 256 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 286 (909)
..+++.+++.+.+.+++.+|.++...|....
T Consensus 135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 135 QFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 7777777777777777777777776665543
No 327
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=85.31 E-value=78 Score=36.52 Aligned_cols=187 Identities=14% Similarity=0.008 Sum_probs=83.4
Q ss_pred hhhcCChHHHHHHHHHHHhcCCCC-----ChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccH---HHH--HHH
Q 002549 649 YGRLKLWQKAESLVGCLRQRCAPV-----DRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSI---NGL--LQA 718 (909)
Q Consensus 649 ~~~~~~~~~A~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~---~~l--~~~ 718 (909)
....|+.+.|.++.+..+.. .+. ....+..++.+..-.|++++|..+.....+....-++..+ ..+ ...
T Consensus 468 al~~~~~e~a~~lar~al~~-L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~i 546 (894)
T COG2909 468 ALNRGDPEEAEDLARLALVQ-LPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEI 546 (894)
T ss_pred HHhcCCHHHHHHHHHHHHHh-cccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 34456666666666665543 222 2344455556666667777777776666554222222222 111 122
Q ss_pred HHhcCc--hhhHHHHHHHHHhCCC--C----ccHHHHHHHHHHHHhcCCHHHHHHHHHHHH----hcCCCchHH--HHHH
Q 002549 719 LIVDGR--LNELYVVIQELQDMDF--K----ISKSSILLMLDAFARSGNIFEVKKIYHGMK----AAGYFPTMY--LYRV 784 (909)
Q Consensus 719 ~~~~g~--~~~A~~~~~~~~~~~~--~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~p~~~--~~~~ 784 (909)
+..+|. +.+....+........ + +-.-+...++.++.+ ++.+..-..... .....|-.. .+..
T Consensus 547 l~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~ 623 (894)
T COG2909 547 LEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSM 623 (894)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHH
Confidence 445552 2222233322221110 1 111233334444433 333322222222 222222111 2235
Q ss_pred HHHHHhccCchHHHHHHHHHHHHCCCCC----CHHhHHHHHHHh--hccCCHHHHHHHHHH
Q 002549 785 MSGLFCKGKRVRDVEAMVSEMKEAGFKP----DLSIWNSMLKLY--TGIEDFKKTIQVYQE 839 (909)
Q Consensus 785 l~~~~~~~g~~~~A~~~~~~~~~~~~~p----~~~~~~~l~~~~--~~~g~~~~A~~~~~~ 839 (909)
|+..+...|++++|...++++......+ +-.+....+..- ..+||..+|..-..+
T Consensus 624 LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 624 LAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 6677777788888887777775532222 112222222222 234676666655544
No 328
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=85.20 E-value=14 Score=35.25 Aligned_cols=64 Identities=17% Similarity=0.204 Sum_probs=45.4
Q ss_pred hHHHHHHHhhccCC-------HHHHHHHHHHHHHcCCCC----C-hhhHHHHHHHHHhcCChhhHHHHHHHHHHcC
Q 002549 816 IWNSMLKLYTGIED-------FKKTIQVYQEIQEADLQP----D-EDSFNTLIIMYCRDCRPEEGLSLMHEMRKLG 879 (909)
Q Consensus 816 ~~~~l~~~~~~~g~-------~~~A~~~~~~~~~~~~~p----~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 879 (909)
.+.-+.+.|...|+ +.+|++.|+++.+..-.| + ......++....+.|++++|.++|.++...+
T Consensus 120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 120 LCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 34555666777776 566777777777654443 2 2445567788899999999999999999643
No 329
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=85.01 E-value=56 Score=34.62 Aligned_cols=109 Identities=12% Similarity=0.153 Sum_probs=76.1
Q ss_pred HHhccCchHHHHHHHHHHH---HCC--CCCCH---HhHHHHHHHhhccCCHHHHHHHHHHHHH-------cCCCCCh---
Q 002549 788 LFCKGKRVRDVEAMVSEMK---EAG--FKPDL---SIWNSMLKLYTGIEDFKKTIQVYQEIQE-------ADLQPDE--- 849 (909)
Q Consensus 788 ~~~~~g~~~~A~~~~~~~~---~~~--~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~p~~--- 849 (909)
.+.-.|++..|.+++...- +.| ++|.- ..||.++..+...|.+.-+..+|.++++ .|+.|..
T Consensus 249 ~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~t 328 (696)
T KOG2471|consen 249 LEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFT 328 (696)
T ss_pred HHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCccee
Confidence 3445688888888775541 112 12222 2367787777888888888888888774 3666632
Q ss_pred -------hhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHhcc
Q 002549 850 -------DSFNTLIIMYCRDCRPEEGLSLMHEMRKLGLEPKLDTYKSLISAFGKQ 897 (909)
Q Consensus 850 -------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 897 (909)
...++.+-.|...|++-.|.+.|.+..+. +..++-.|-.|+..+...
T Consensus 329 ls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 329 LSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIMA 382 (696)
T ss_pred hhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHH
Confidence 34567788889999999999999998874 455777888888887543
No 330
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=85.00 E-value=43 Score=33.26 Aligned_cols=196 Identities=14% Similarity=0.114 Sum_probs=94.0
Q ss_pred ChhhHHHHHHHHHHcCCCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHH
Q 002549 618 FPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVF 697 (909)
Q Consensus 618 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 697 (909)
+++.-++....+++ ++|...++|..++.- ...-..+|+.+|+++++.+ ..+|+. -..+..+|...+
T Consensus 199 np~~RI~~A~~ALe--IN~eCA~AyvLLAEE--Ea~Ti~~AE~l~k~ALka~----e~~yr~-sqq~qh~~~~~d----- 264 (556)
T KOG3807|consen 199 NPPARIKAAYQALE--INNECATAYVLLAEE--EATTIVDAERLFKQALKAG----ETIYRQ-SQQCQHQSPQHE----- 264 (556)
T ss_pred CcHHHHHHHHHHHh--cCchhhhHHHhhhhh--hhhhHHHHHHHHHHHHHHH----HHHHhh-HHHHhhhccchh-----
Confidence 33333344444444 677777777666542 3345667888888877652 222321 112222232222
Q ss_pred HHHHHcCCCCCcccH--HHHHHHHHhcCchhhHHHHHHHHHhCCCCcc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 002549 698 NTMMRDGPSPTVDSI--NGLLQALIVDGRLNELYVVIQELQDMDFKIS-KSSILLMLDAFARSGNIFEVKKIYHGMKAAG 774 (909)
Q Consensus 698 ~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 774 (909)
.+.+++. ++.+| ..|..+-.+.|+..+|.+.++.+.+.-.-.+ -.....++.++....-+.+.-.++.+..+..
T Consensus 265 -a~~rRDt--nvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDdis 341 (556)
T KOG3807|consen 265 -AQLRRDT--NVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDIS 341 (556)
T ss_pred -hhhhccc--chhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 2233222 33344 2344444578888888888887765432111 1222346666665555544444444444322
Q ss_pred CCch-HHHHHHHHHHHhccCchHHHHHHHHHHHHCCCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHcCCCCChhhH
Q 002549 775 YFPT-MYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDLSIWNSMLKLYTGIEDFKKTIQVYQEIQEADLQPDEDSF 852 (909)
Q Consensus 775 ~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 852 (909)
.+.+ ...|.+. +.+ + .+....+.||..+-..|-.+ -..|.+...++++ ++|...-|
T Consensus 342 lPkSA~icYTaA---LLK------~-----RAVa~kFspd~asrRGLS~A------E~~AvEAihRAvE--FNPHVPkY 398 (556)
T KOG3807|consen 342 LPKSAAICYTAA---LLK------T-----RAVSEKFSPETASRRGLSTA------EINAVEAIHRAVE--FNPHVPKY 398 (556)
T ss_pred CcchHHHHHHHH---HHH------H-----HHHHhhcCchhhhhccccHH------HHHHHHHHHHHhh--cCCCCcHH
Confidence 2111 1122211 111 1 12223366776654433222 2347778888888 78865443
No 331
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=84.91 E-value=5.3 Score=36.94 Aligned_cols=73 Identities=18% Similarity=0.265 Sum_probs=57.2
Q ss_pred HHHHHHHHhccCchHHHHHHHHHHHHCCCCC-CHHhHHHHHHHhhccCCHHHHHHHHHHHHHcCCCCCh----hhHHHHH
Q 002549 782 YRVMSGLFCKGKRVRDVEAMVSEMKEAGFKP-DLSIWNSMLKLYTGIEDFKKTIQVYQEIQEADLQPDE----DSFNTLI 856 (909)
Q Consensus 782 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~ 856 (909)
.+.-+..+.+.+.+.+++.+.++-.+. +| |.-.-..++..||-.|++++|..-++-+-+ +.|+. ..|.+++
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVka--kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~--l~p~~t~~a~lyr~li 79 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKA--KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAAT--LSPQDTVGASLYRHLI 79 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhc--CCccccchhHHHHHHhhcchHHHHHHHHHHHhh--cCcccchHHHHHHHHH
Confidence 445566788899999999999887763 45 556778889999999999999999999888 77753 4566666
Q ss_pred HH
Q 002549 857 IM 858 (909)
Q Consensus 857 ~~ 858 (909)
.+
T Consensus 80 r~ 81 (273)
T COG4455 80 RC 81 (273)
T ss_pred HH
Confidence 54
No 332
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=84.53 E-value=57 Score=34.30 Aligned_cols=119 Identities=13% Similarity=0.094 Sum_probs=67.9
Q ss_pred hcCCHHHHHHH-HHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 002549 303 KQGQHDVALQL-YRDMKLSGRNPDVVTYTVLIDSLGKANKISEAANVMSEMLDASVKPTLRTYSALICGYAKAGNRLEAE 381 (909)
Q Consensus 303 ~~g~~~~A~~~-~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 381 (909)
..|+.-.|-+- +.-+......|+.+...+. .+...|+++.+.+.+....+. +.....+...+++...+.|++++|.
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~--i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSV--IFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHHH--HHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHH
Confidence 45666555443 3333333223444433333 334567888887777665442 2345566777777777888888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHC
Q 002549 382 KTFYCMRRSGIRPDHLAYSVMLDIFLRFNETNKAMMLYQEMVSN 425 (909)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 425 (909)
.+-..|....+. +...........-..|-++++...|++...-
T Consensus 378 s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~ 420 (831)
T PRK15180 378 STAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLL 420 (831)
T ss_pred HHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhcc
Confidence 877777766553 2222222222233456677777777777643
No 333
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=84.53 E-value=42 Score=32.70 Aligned_cols=91 Identities=13% Similarity=0.145 Sum_probs=41.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh----cCCCch---HHHHHHHHHHHhccCchHHHHHHHHHHHH----CCCCCCHHhHH
Q 002549 750 MLDAFARSGNIFEVKKIYHGMKA----AGYFPT---MYLYRVMSGLFCKGKRVRDVEAMVSEMKE----AGFKPDLSIWN 818 (909)
Q Consensus 750 l~~~~~~~g~~~~a~~~~~~~~~----~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p~~~~~~ 818 (909)
++..+.+.|.+.+|+.+...+.. .+-.|+ +..+.+ ..|.+.....++..-+..+.. ..++|-...-.
T Consensus 131 li~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllES--Kvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~l 208 (421)
T COG5159 131 LIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLES--KVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQL 208 (421)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhH--HHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHH
Confidence 56667777777777666555432 222232 222221 223333333333333322211 12455444444
Q ss_pred HHHHHh--hccCCHHHHHHHHHHHHH
Q 002549 819 SMLKLY--TGIEDFKKTIQVYQEIQE 842 (909)
Q Consensus 819 ~l~~~~--~~~g~~~~A~~~~~~~~~ 842 (909)
.|+.+- |...++..|..+|-++.+
T Consensus 209 DL~sGIlhcdd~dyktA~SYF~Ea~E 234 (421)
T COG5159 209 DLLSGILHCDDRDYKTASSYFIEALE 234 (421)
T ss_pred HHhccceeeccccchhHHHHHHHHHh
Confidence 444432 333466666666666655
No 334
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=84.38 E-value=41 Score=34.69 Aligned_cols=26 Identities=4% Similarity=0.092 Sum_probs=19.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcC
Q 002549 749 LMLDAFARSGNIFEVKKIYHGMKAAG 774 (909)
Q Consensus 749 ~l~~~~~~~g~~~~a~~~~~~~~~~~ 774 (909)
.+...+.++|..+.|..+++-+.+..
T Consensus 159 r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 159 RLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 34445567888888888888888743
No 335
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=84.13 E-value=2.3 Score=25.99 Aligned_cols=28 Identities=18% Similarity=0.218 Sum_probs=25.0
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHH
Q 002549 850 DSFNTLIIMYCRDCRPEEGLSLMHEMRK 877 (909)
Q Consensus 850 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 877 (909)
.+|..++.+|...|++++|.+.|++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3678899999999999999999999885
No 336
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.09 E-value=11 Score=40.74 Aligned_cols=99 Identities=13% Similarity=0.045 Sum_probs=49.3
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCchhhHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCCHHHHHH
Q 002549 686 ASGCYERARAVFNTMMRDGPSPTVDSINGLLQALIVDGRLNELYVVIQELQDMDFKISKSSILLMLDAFARSGNIFEVKK 765 (909)
Q Consensus 686 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 765 (909)
+.|+++.|.++..+. .+..-|..|..+....|++..|.+.|.+..+.+ .|+-.+...|+-+.-..
T Consensus 649 ~lgrl~iA~~la~e~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~---------~LlLl~t~~g~~~~l~~ 713 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEA------NSEVKWRQLGDAALSAGELPLASECFLRARDLG---------SLLLLYTSSGNAEGLAV 713 (794)
T ss_pred hcCcHHHHHHHHHhh------cchHHHHHHHHHHhhcccchhHHHHHHhhcchh---------hhhhhhhhcCChhHHHH
Confidence 445566555554443 134456666666666666666665555544322 34444455555554444
Q ss_pred HHHHHHhcCCCchHHHHHHHHHHHhccCchHHHHHHHHHH
Q 002549 766 IYHGMKAAGYFPTMYLYRVMSGLFCKGKRVRDVEAMVSEM 805 (909)
Q Consensus 766 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 805 (909)
+-....+.|. .|....+|...|+++++++++.+-
T Consensus 714 la~~~~~~g~------~N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 714 LASLAKKQGK------NNLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHHHhhcc------cchHHHHHHHcCCHHHHHHHHHhc
Confidence 4444444331 122223344566666666665544
No 337
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.04 E-value=17 Score=35.74 Aligned_cols=100 Identities=15% Similarity=0.151 Sum_probs=59.6
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHH-----HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 002549 286 GFGKDEMTYNTIIHMYGKQGQHDVALQLYRDMKLSGRNPDVV-----TYTVLIDSLGKANKISEAANVMSEMLDASVKPT 360 (909)
Q Consensus 286 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-----~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 360 (909)
|.+.+..+-..++..-....+++.+...+-++... |+.. +-.++++. +-.-+.++++.++..=+.-|+.||
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs---~~a~~~~~~~~~~~irl-llky~pq~~i~~l~npIqYGiF~d 134 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHS---PNAWYLRNWTIHTWIRL-LLKYDPQKAIYTLVNPIQYGIFPD 134 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcC---cchhhhccccHHHHHHH-HHccChHHHHHHHhCcchhccccc
Confidence 44455555556666555566777777777666543 2211 11112222 223355677777766667777777
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 002549 361 LRTYSALICGYAKAGNRLEAEKTFYCMRR 389 (909)
Q Consensus 361 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 389 (909)
..++..++..+.+.+++.+|.++...|..
T Consensus 135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 135 QFTFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 77777777777777777777766665554
No 338
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=83.96 E-value=1.4 Score=25.06 Aligned_cols=22 Identities=18% Similarity=0.150 Sum_probs=11.2
Q ss_pred HHHHHHHHHhcCChhhHHHHHH
Q 002549 852 FNTLIIMYCRDCRPEEGLSLMH 873 (909)
Q Consensus 852 ~~~l~~~~~~~g~~~~A~~~~~ 873 (909)
...++.++...|++++|...++
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHHh
Confidence 3445555555555555555443
No 339
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=83.86 E-value=2.1 Score=25.85 Aligned_cols=27 Identities=26% Similarity=0.506 Sum_probs=14.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 002549 679 ALIKAYAASGCYERARAVFNTMMRDGP 705 (909)
Q Consensus 679 ~l~~~~~~~g~~~~A~~~~~~~~~~~~ 705 (909)
.++.++...|++++|.+.|+++++..|
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 344455555555666666555555443
No 340
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=83.82 E-value=65 Score=34.38 Aligned_cols=100 Identities=12% Similarity=0.142 Sum_probs=69.4
Q ss_pred CCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHH---HHHcCCHHHHHHHHHHHHHcCCCCCcc
Q 002549 634 IPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKA---YAASGCYERARAVFNTMMRDGPSPTVD 710 (909)
Q Consensus 634 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~g~~~~A~~~~~~~~~~~~~~~~~ 710 (909)
..|+..+.-..+.+.+.+.|-+.+|...+..+... +|++...+..++.. ...+| ...+..+++.+....- .++.
T Consensus 455 ~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~fg-~d~~ 531 (568)
T KOG2396|consen 455 IGADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCN-LANIREYYDRALREFG-ADSD 531 (568)
T ss_pred cCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHHhC-CChH
Confidence 45666667777788888888899999999988877 67788888777753 22334 7788888888877633 3666
Q ss_pred cHHHHHHHHHhcCchhhHHHHHHHHH
Q 002549 711 SINGLLQALIVDGRLNELYVVIQELQ 736 (909)
Q Consensus 711 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 736 (909)
.|-..+..-..+|..+.+-.++.++.
T Consensus 532 lw~~y~~~e~~~g~~en~~~~~~ra~ 557 (568)
T KOG2396|consen 532 LWMDYMKEELPLGRPENCGQIYWRAM 557 (568)
T ss_pred HHHHHHHhhccCCCcccccHHHHHHH
Confidence 67665555556666666665555543
No 341
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=83.81 E-value=8.4 Score=41.22 Aligned_cols=110 Identities=13% Similarity=0.024 Sum_probs=76.3
Q ss_pred HhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCchhhHHHHHHHHHhCCCCccHHHHHHHHHHH
Q 002549 675 KVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQALIVDGRLNELYVVIQELQDMDFKISKSSILLMLDAF 754 (909)
Q Consensus 675 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 754 (909)
.+.|..+-.....|+...|...+..+....|.-+-++...|.+.+.+.|-..+|..++.+..... ...+.++..+..++
T Consensus 608 ~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~ 686 (886)
T KOG4507|consen 608 LILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAY 686 (886)
T ss_pred EEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhH
Confidence 33343333344568888888888888776666666777788888888888888888888777655 44456677778888
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCchHHHHHHHH
Q 002549 755 ARSGNIFEVKKIYHGMKAAGYFPTMYLYRVMS 786 (909)
Q Consensus 755 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 786 (909)
....+++.|++.|++..+.. +-+++.-+.|.
T Consensus 687 l~l~~i~~a~~~~~~a~~~~-~~~~~~~~~l~ 717 (886)
T KOG4507|consen 687 LALKNISGALEAFRQALKLT-TKCPECENSLK 717 (886)
T ss_pred HHHhhhHHHHHHHHHHHhcC-CCChhhHHHHH
Confidence 88888888888888887743 12344444443
No 342
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=83.66 E-value=34 Score=31.77 Aligned_cols=72 Identities=19% Similarity=0.070 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCHHHH
Q 002549 203 EEAMKVYGDLEAHNCQPDLWTYNAMISVYGRCGLFEKAEQLFKELESK---GFFPDAVTYNSLLYAFAREGNVEKV 275 (909)
Q Consensus 203 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~~~~~ll~~~~~~g~~~~a 275 (909)
+.|...|-.+...+..-++.....|...| ...+.++++.++.+..+. +-.+|+..+.+|++.+.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY-~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYY-TKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHH-HccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 44555555555444333333333333332 244555555555544432 1134444555555555555554443
No 343
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=83.64 E-value=2.1 Score=44.62 Aligned_cols=99 Identities=15% Similarity=0.106 Sum_probs=56.9
Q ss_pred hccCchHHHHHHHHHHHHCCCCCCHHhHHHHH-HHhhccCCHHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCChhh
Q 002549 790 CKGKRVRDVEAMVSEMKEAGFKPDLSIWNSML-KLYTGIEDFKKTIQVYQEIQEADLQPDE-DSFNTLIIMYCRDCRPEE 867 (909)
Q Consensus 790 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~-~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~ 867 (909)
.+.+.++.|..++.++++ ..||...|.+.- .++.+.+++..|+.=+.++++ +.|.. ..|..-+.++...+++.+
T Consensus 15 l~~~~fd~avdlysKaI~--ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie--~dP~~~K~Y~rrg~a~m~l~~~~~ 90 (476)
T KOG0376|consen 15 LKDKVFDVAVDLYSKAIE--LDPNCAIYFANRALAHLKVESFGGALHDALKAIE--LDPTYIKAYVRRGTAVMALGEFKK 90 (476)
T ss_pred cccchHHHHHHHHHHHHh--cCCcceeeechhhhhheeechhhhHHHHHHhhhh--cCchhhheeeeccHHHHhHHHHHH
Confidence 345556666666666665 455554433332 456666666666666666666 55643 556566666666666666
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHH
Q 002549 868 GLSLMHEMRKLGLEPKLDTYKSLISAF 894 (909)
Q Consensus 868 A~~~~~~~~~~~~~p~~~~~~~l~~~~ 894 (909)
|+..|+... -+.|+.......++-+
T Consensus 91 A~~~l~~~~--~l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 91 ALLDLEKVK--KLAPNDPDATRKIDEC 115 (476)
T ss_pred HHHHHHHhh--hcCcCcHHHHHHHHHH
Confidence 666666655 3455554444444444
No 344
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=83.57 E-value=48 Score=32.67 Aligned_cols=69 Identities=17% Similarity=0.186 Sum_probs=36.0
Q ss_pred HcCCHHHHHHHH-HHHHHCCCCCCHH----HHHHHHHHHHhcCC-HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 002549 268 REGNVEKVKEIS-ENMLKMGFGKDEM----TYNTIIHMYGKQGQ-HDVALQLYRDMKLSGRNPDVVTYTVLIDSLGKANK 341 (909)
Q Consensus 268 ~~g~~~~a~~~~-~~~~~~~~~~~~~----~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 341 (909)
+...+++..... ++|.+.++ |+.. +|+.+|++---..+ ---|.+.++.+ .+|..|+.++|.+|+
T Consensus 267 ~e~p~~evi~~VKee~k~~nl-Pe~eVi~ivWs~iMsaveWnKkeelva~qalrhl---------K~yaPLL~af~s~g~ 336 (412)
T KOG2297|consen 267 EEDPVKEVILYVKEEMKRNNL-PETEVIGIVWSGIMSAVEWNKKEELVAEQALRHL---------KQYAPLLAAFCSQGQ 336 (412)
T ss_pred cCCCHHHHHHHHHHHHHhcCC-CCceEEeeeHhhhhHHHhhchHHHHHHHHHHHHH---------HhhhHHHHHHhcCCh
Confidence 334445544444 34555554 4433 56666665322211 11123333333 368888999999988
Q ss_pred HHHHH
Q 002549 342 ISEAA 346 (909)
Q Consensus 342 ~~~A~ 346 (909)
.+-.+
T Consensus 337 sEL~L 341 (412)
T KOG2297|consen 337 SELEL 341 (412)
T ss_pred HHHHH
Confidence 77554
No 345
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=83.56 E-value=1.8 Score=27.99 Aligned_cols=28 Identities=18% Similarity=0.389 Sum_probs=20.8
Q ss_pred HhHHHHHHHhhccCCHHHHHHHHHHHHH
Q 002549 815 SIWNSMLKLYTGIEDFKKTIQVYQEIQE 842 (909)
Q Consensus 815 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 842 (909)
.+++.++.+|...|++++|+.+++++++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3567777888888888888888888765
No 346
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=83.49 E-value=67 Score=34.30 Aligned_cols=166 Identities=10% Similarity=0.014 Sum_probs=89.8
Q ss_pred CCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHH
Q 002549 636 FEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGL 715 (909)
Q Consensus 636 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 715 (909)
|-+...+..++..++...+++-.+.++.+++.. ..+-..+..++.+|... ..++-..+|+++.+...+ +++--.-|
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~--~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReL 138 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEY--GESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGREL 138 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHh--cchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHH
Confidence 334445555666666666666666666666654 23555666667776666 445666677766665544 44333344
Q ss_pred HHHHHhcCchhhHHHHHHHHHhCCCCc--c---HHHHHHHHHHHHhcCCHHHHHHHHHHHHh-cCCCchHHHHHHHHHHH
Q 002549 716 LQALIVDGRLNELYVVIQELQDMDFKI--S---KSSILLMLDAFARSGNIFEVKKIYHGMKA-AGYFPTMYLYRVMSGLF 789 (909)
Q Consensus 716 ~~~~~~~g~~~~A~~~~~~~~~~~~~~--~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~p~~~~~~~l~~~~ 789 (909)
+..|.+ ++.+.+...|.++...-++- + ...+..+... -..+.+....+..++.. .|..-....+.-+..-|
T Consensus 139 a~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 139 ADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 443433 66666666666655432220 0 0111111110 13455555555555553 34334445555555666
Q ss_pred hccCchHHHHHHHHHHHHC
Q 002549 790 CKGKRVRDVEAMVSEMKEA 808 (909)
Q Consensus 790 ~~~g~~~~A~~~~~~~~~~ 808 (909)
....++++|++++..+++.
T Consensus 216 s~~eN~~eai~Ilk~il~~ 234 (711)
T COG1747 216 SENENWTEAIRILKHILEH 234 (711)
T ss_pred ccccCHHHHHHHHHHHhhh
Confidence 6777777777777766653
No 347
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=82.81 E-value=12 Score=36.37 Aligned_cols=87 Identities=13% Similarity=0.129 Sum_probs=57.7
Q ss_pred HHHHHhcCchhhHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHh-----
Q 002549 716 LQALIVDGRLNELYVVIQELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYHGMKAAGYFPTMYLYRVMSGLFC----- 790 (909)
Q Consensus 716 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~----- 790 (909)
|.++++.++|.+++.+.-+--+..-+..+.+....|-.|.+.|......++-...+...-+-+..-|..+++.|.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 467777888888777766655544445556666667778888888888888777776321222233665555544
Q ss_pred ccCchHHHHHHH
Q 002549 791 KGKRVRDVEAMV 802 (909)
Q Consensus 791 ~~g~~~~A~~~~ 802 (909)
-.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 568888888877
No 348
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=82.57 E-value=2.3 Score=28.03 Aligned_cols=27 Identities=22% Similarity=0.161 Sum_probs=19.7
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHcC
Q 002549 853 NTLIIMYCRDCRPEEGLSLMHEMRKLG 879 (909)
Q Consensus 853 ~~l~~~~~~~g~~~~A~~~~~~~~~~~ 879 (909)
..|+.+|...|+.+.|.+++++....|
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 356777888888888888888777543
No 349
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=82.56 E-value=0.35 Score=42.92 Aligned_cols=82 Identities=13% Similarity=0.148 Sum_probs=48.9
Q ss_pred HHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCc
Q 002549 645 IIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQALIVDGR 724 (909)
Q Consensus 645 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 724 (909)
++..+.+.+.......+++.+...+...+....+.++..|++.++.+...++++.. +..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcch
Confidence 34556666677777777777776555566778888888888877766666666521 11233345555555665
Q ss_pred hhhHHHHHH
Q 002549 725 LNELYVVIQ 733 (909)
Q Consensus 725 ~~~A~~~~~ 733 (909)
+++|.-++.
T Consensus 86 ~~~a~~Ly~ 94 (143)
T PF00637_consen 86 YEEAVYLYS 94 (143)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555554443
No 350
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=82.41 E-value=10 Score=34.93 Aligned_cols=73 Identities=5% Similarity=-0.043 Sum_probs=41.7
Q ss_pred hhHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHh---cCCCchHHHHHHHHHHHhccCchHHHH
Q 002549 726 NELYVVIQELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYHGMKA---AGYFPTMYLYRVMSGLFCKGKRVRDVE 799 (909)
Q Consensus 726 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~p~~~~~~~l~~~~~~~g~~~~A~ 799 (909)
++|...|-++...+.-.++.....|+..|. ..|.++++.++.+.++ .+-.+|+..+.+|+..+.+.|+++.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 455555555555543333333344443333 5677777777777765 222456667777777777777766653
No 351
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=81.76 E-value=7.5 Score=32.92 Aligned_cols=71 Identities=6% Similarity=0.114 Sum_probs=36.4
Q ss_pred CchHHHHHHHHHHHhccCchH---HHHHHHHHHHHCCCCCCH--HhHHHHHHHhhccCCHHHHHHHHHHHHHcCCCCCh
Q 002549 776 FPTMYLYRVMSGLFCKGKRVR---DVEAMVSEMKEAGFKPDL--SIWNSMLKLYTGIEDFKKTIQVYQEIQEADLQPDE 849 (909)
Q Consensus 776 ~p~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 849 (909)
.++..+-..+..++.++.+.+ +.+.++++..+. -.|+. .....|.-+|.+.+++++++++.+.+++ ..||+
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~-~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~--~e~~n 104 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKS-AHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE--TEPNN 104 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhh-cCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh--hCCCc
Confidence 355555555666665554433 344555555541 12222 2333344456666666666666666666 55544
No 352
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=81.51 E-value=65 Score=32.71 Aligned_cols=50 Identities=16% Similarity=0.020 Sum_probs=27.2
Q ss_pred ChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCC
Q 002549 654 LWQKAESLVGCLRQRCAPVDRKVWNALIKAYAA----SGCYERARAVFNTMMRDGPS 706 (909)
Q Consensus 654 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~ 706 (909)
+..+|...++...+.| .+.....|..+|.. ..+..+|...|+++.+.|..
T Consensus 92 ~~~~A~~~~~~~a~~g---~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~ 145 (292)
T COG0790 92 DKTKAADWYRCAAADG---LAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNV 145 (292)
T ss_pred cHHHHHHHHHHHhhcc---cHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCCh
Confidence 4555666666554443 33334445555544 23666777777777666554
No 353
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=81.08 E-value=37 Score=29.67 Aligned_cols=55 Identities=16% Similarity=0.090 Sum_probs=33.2
Q ss_pred hhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 002549 649 YGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDG 704 (909)
Q Consensus 649 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 704 (909)
-....+.+++..++..+.-. .|.....-..-+..+...|+|++|.++|+...+.+
T Consensus 20 aL~~~d~~D~e~lLdALrvL-rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 20 ALRSADPYDAQAMLDALRVL-RPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred HHhcCCHHHHHHHHHHHHHh-CCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 34466777777777776543 23233333333445667778888888887776544
No 354
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=80.79 E-value=8.2 Score=41.28 Aligned_cols=103 Identities=17% Similarity=0.080 Sum_probs=74.3
Q ss_pred hcccHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 002549 474 KGECYDHAAEILRSAIRNGIELDHEKLLSILSSYNVSGRHLEACELIEFVKQHASESTPPLTQAFIIMLCKAQKLDAALE 553 (909)
Q Consensus 474 ~~~~~~~a~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 553 (909)
..|....|...+..+.........+.+..+.+...+.|...+|..++.+.+... .+.+.+...+..+|....+++.|++
T Consensus 619 ~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~ 697 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALE 697 (886)
T ss_pred ecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHH
Confidence 356677888887777665554455566777778888888888888888777765 4455666777888888888888888
Q ss_pred HHHHhhccCCcccchhhHHHHHHHHH
Q 002549 554 EYSNAWGFGFFSKSKTMYESLIHSCE 579 (909)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~~li~~~~ 579 (909)
.|+.+.+.. |.+++.-+.|...-|
T Consensus 698 ~~~~a~~~~--~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 698 AFRQALKLT--TKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHhcC--CCChhhHHHHHHHHH
Confidence 888888776 667777666654443
No 355
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=80.74 E-value=1.1e+02 Score=34.95 Aligned_cols=41 Identities=12% Similarity=0.198 Sum_probs=21.9
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 002549 402 MLDIFLRFNETNKAMMLYQEMVSNGFTPDQALYEIMIGVLGR 443 (909)
Q Consensus 402 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 443 (909)
+|-.|.|+|++++|.++..+... ........+...+..+..
T Consensus 117 ~Iyy~LR~G~~~~A~~~~~~~~~-~~~~~~~~f~~~l~~~~~ 157 (613)
T PF04097_consen 117 LIYYCLRCGDYDEALEVANENRN-QFQKIERSFPTYLKAYAS 157 (613)
T ss_dssp HHHHHHTTT-HHHHHHHHHHTGG-GS-TTTTHHHHHHHHCTT
T ss_pred HHHHHHhcCCHHHHHHHHHHhhh-hhcchhHHHHHHHHHHHh
Confidence 45566677777777777744332 223333445555555544
No 356
>PRK10941 hypothetical protein; Provisional
Probab=80.51 E-value=14 Score=36.63 Aligned_cols=78 Identities=8% Similarity=0.147 Sum_probs=61.1
Q ss_pred HHHHHHHhhccCCHHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCChhhHHHHHHHHHH-cCCCCChhhHHHHHHHH
Q 002549 817 WNSMLKLYTGIEDFKKTIQVYQEIQEADLQPDE-DSFNTLIIMYCRDCRPEEGLSLMHEMRK-LGLEPKLDTYKSLISAF 894 (909)
Q Consensus 817 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p~~~~~~~l~~~~ 894 (909)
.+.+-.+|.+.++++.|+...+.++. +.|+. .-+.-.+-.|.+.|.+..|..-++..++ ....|+.......+..+
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~--l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l 261 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQ--FDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSI 261 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Confidence 34566678889999999999999999 89964 6677788999999999999998888875 44566666666666555
Q ss_pred hc
Q 002549 895 GK 896 (909)
Q Consensus 895 ~~ 896 (909)
..
T Consensus 262 ~~ 263 (269)
T PRK10941 262 EQ 263 (269)
T ss_pred hh
Confidence 43
No 357
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=80.10 E-value=89 Score=33.45 Aligned_cols=91 Identities=10% Similarity=0.053 Sum_probs=39.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhccCCcccchhhHHHHHHHHHhcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 002549 535 TQAFIIMLCKAQKLDAALEEYSNAWGFGFFSKSKTMYESLIHSCEYNERFAEASQVFSDMRFYNIEPSEDLYRSMVVAYC 614 (909)
Q Consensus 535 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 614 (909)
..++++.+..+....-...+..++...+ .+...+..++.+|..+ ..+.-..+++++.+.. -|.......+..+.
T Consensus 69 l~~~~~~f~~n~k~~~veh~c~~~l~~~---e~kmal~el~q~y~en-~n~~l~~lWer~ve~d--fnDvv~~ReLa~~y 142 (711)
T COG1747 69 LVTLLTIFGDNHKNQIVEHLCTRVLEYG---ESKMALLELLQCYKEN-GNEQLYSLWERLVEYD--FNDVVIGRELADKY 142 (711)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHhc---chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhc--chhHHHHHHHHHHH
Confidence 3344444444444444455555555432 3444555555555554 3334444455444322 22222222222222
Q ss_pred hcCChhhHHHHHHHHHH
Q 002549 615 KMDFPETAHFIADQAEK 631 (909)
Q Consensus 615 ~~~~~~~a~~~~~~~~~ 631 (909)
..++.+.+..+|.+++.
T Consensus 143 Ekik~sk~a~~f~Ka~y 159 (711)
T COG1747 143 EKIKKSKAAEFFGKALY 159 (711)
T ss_pred HHhchhhHHHHHHHHHH
Confidence 23444455555554443
No 358
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=80.01 E-value=87 Score=33.28 Aligned_cols=120 Identities=9% Similarity=-0.066 Sum_probs=72.6
Q ss_pred HHHHhcCCHHHHHHHHHHhhccCCccc--------chhhHHHHHHHHHhcccHHHHHHHHHHHHh-------CCCCCCHH
Q 002549 540 IMLCKAQKLDAALEEYSNAWGFGFFSK--------SKTMYESLIHSCEYNERFAEASQVFSDMRF-------YNIEPSED 604 (909)
Q Consensus 540 ~~~~~~g~~~~A~~~~~~~~~~~~~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-------~~~~p~~~ 604 (909)
..+.-.|++.+|.+++....-.. .+. ....||.|.-.+.+.|.+.-+..+|..... .|++|...
T Consensus 248 q~eY~~gn~~kA~KlL~~sni~~-~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~ 326 (696)
T KOG2471|consen 248 QLEYAHGNHPKAMKLLLVSNIHK-EAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKT 326 (696)
T ss_pred HHHHHhcchHHHHHHHHhccccc-ccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcc
Confidence 34556788888888776543221 111 234467776666667777777777665542 12221100
Q ss_pred HHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHH
Q 002549 605 LYRSMVVAYCKMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAY 684 (909)
Q Consensus 605 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 684 (909)
..+ ..-....+.+..+-.|...|+.-.|.+.|.+..+. +..++..|--|..+|
T Consensus 327 ------------------~tl--------s~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcC 379 (696)
T KOG2471|consen 327 ------------------FTL--------SQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECC 379 (696)
T ss_pred ------------------eeh--------hcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHH
Confidence 000 01123445666777788888888888888888766 666888898888888
Q ss_pred HHc
Q 002549 685 AAS 687 (909)
Q Consensus 685 ~~~ 687 (909)
+..
T Consensus 380 ima 382 (696)
T KOG2471|consen 380 IMA 382 (696)
T ss_pred HHH
Confidence 653
No 359
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=79.13 E-value=4.5 Score=30.52 Aligned_cols=47 Identities=15% Similarity=0.104 Sum_probs=32.3
Q ss_pred ccCCHHHHHHHHHHHHHcCCCC-Ch-hhHHHHHHHHHhcCChhhHHHHH
Q 002549 826 GIEDFKKTIQVYQEIQEADLQP-DE-DSFNTLIIMYCRDCRPEEGLSLM 872 (909)
Q Consensus 826 ~~g~~~~A~~~~~~~~~~~~~p-~~-~~~~~l~~~~~~~g~~~~A~~~~ 872 (909)
.+++.++|+..|++++++-.+| +. .++-.++.+|+..|++++.+++-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667888888888888742222 21 34556667888888888887774
No 360
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=79.04 E-value=4.3 Score=28.16 Aligned_cols=29 Identities=14% Similarity=0.292 Sum_probs=16.1
Q ss_pred HHHHhhccCCHHHHHHHHHHHHHcCCCCChh
Q 002549 820 MLKLYTGIEDFKKTIQVYQEIQEADLQPDED 850 (909)
Q Consensus 820 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 850 (909)
+.-++.+.|++++|.++.+.+++ +.|++.
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~ 35 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLE--IEPDNR 35 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHH--HTTS-H
T ss_pred HHHHHHHhhhHHHHHHHHHHHHh--hCCCcH
Confidence 34455666666666666666666 566543
No 361
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=78.98 E-value=13 Score=35.49 Aligned_cols=84 Identities=12% Similarity=0.091 Sum_probs=56.3
Q ss_pred hccCCHHHHHHHHHHHHHc----CCCCCh--hhHHHHHHHHHhcCC-------hhhHHHHHHHHHHcCCCCC-----hhh
Q 002549 825 TGIEDFKKTIQVYQEIQEA----DLQPDE--DSFNTLIIMYCRDCR-------PEEGLSLMHEMRKLGLEPK-----LDT 886 (909)
Q Consensus 825 ~~~g~~~~A~~~~~~~~~~----~~~p~~--~~~~~l~~~~~~~g~-------~~~A~~~~~~~~~~~~~p~-----~~~ 886 (909)
.....+++|++.|.-++-. +-+|.. ..+..++|.|-..|+ +..|.+.|++..+....|. ...
T Consensus 88 ~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l 167 (214)
T PF09986_consen 88 SGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATL 167 (214)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHH
Confidence 3445778888877776532 334432 456789999999998 4566666666665443332 223
Q ss_pred HHHHHHHHhccCCHHHHHHhhc
Q 002549 887 YKSLISAFGKQQQLEQAEELLK 908 (909)
Q Consensus 887 ~~~l~~~~~~~g~~~~A~~~~~ 908 (909)
.-.++....+.|+.++|.++|.
T Consensus 168 ~YLigeL~rrlg~~~eA~~~fs 189 (214)
T PF09986_consen 168 LYLIGELNRRLGNYDEAKRWFS 189 (214)
T ss_pred HHHHHHHHHHhCCHHHHHHHHH
Confidence 3356777799999999999985
No 362
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=78.97 E-value=1.3e+02 Score=34.53 Aligned_cols=88 Identities=18% Similarity=0.145 Sum_probs=37.8
Q ss_pred HHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHh---
Q 002549 228 ISVYGRCGLFEKAEQLFKELESKGFFPDAVTYNSLLYAFAREGNVEKVKEISENMLKMGF-GKDEMTYNTIIHMYGK--- 303 (909)
Q Consensus 228 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~--- 303 (909)
...+.-+|+++.|++.+-+ ..+...+.+.+...+.-|.-.+-.+... ..+..... .|...-+..||..|++
T Consensus 265 f~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~ 339 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFE 339 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTT
T ss_pred HHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHh
Confidence 3445667888888888866 2222334555544444332221111111 22221110 1112456777777775
Q ss_pred cCCHHHHHHHHHHHHhc
Q 002549 304 QGQHDVALQLYRDMKLS 320 (909)
Q Consensus 304 ~g~~~~A~~~~~~~~~~ 320 (909)
..+..+|.+.|--+...
T Consensus 340 ~td~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 340 ITDPREALQYLYLICLF 356 (613)
T ss_dssp TT-HHHHHHHHHGGGGS
T ss_pred ccCHHHHHHHHHHHHHc
Confidence 35677787777766653
No 363
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.81 E-value=1.2e+02 Score=34.36 Aligned_cols=102 Identities=12% Similarity=0.099 Sum_probs=59.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 002549 193 ISACSRESNLEEAMKVYGDLEAHNCQP---DLWTYNAMISVYGRCGLFEKAEQLFKELESKGFFPDAVTYNSLLYAFARE 269 (909)
Q Consensus 193 i~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 269 (909)
|+.+.+.+.+++|+..-+..... .| -...+...|..+.-.|++++|-...-.|... +..-|...+.-+...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccc
Confidence 34566677788887776654432 33 2345677777778888888888777777654 555666666666555
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 002549 270 GNVEKVKEISENMLKMGFGKDEMTYNTIIHMYGK 303 (909)
Q Consensus 270 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 303 (909)
++......++ -......+..+|..++..+..
T Consensus 437 ~~l~~Ia~~l---Pt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 437 DQLTDIAPYL---PTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred cccchhhccC---CCCCcccCchHHHHHHHHHHH
Confidence 5554432221 111111345566666666554
No 364
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=77.54 E-value=86 Score=31.81 Aligned_cols=123 Identities=13% Similarity=0.195 Sum_probs=71.1
Q ss_pred CHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcc-----C--chHHHHHHHHHHHHCCCCCCHHhHHHHHHHhhc----c
Q 002549 759 NIFEVKKIYHGMKAAGYFPTMYLYRVMSGLFCKG-----K--RVRDVEAMVSEMKEAGFKPDLSIWNSMLKLYTG----I 827 (909)
Q Consensus 759 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-----g--~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~ 827 (909)
|..+|...|.+..+.|..+.......+...|... - ....|...+.++-..+ +......+...|.. .
T Consensus 128 d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~ 204 (292)
T COG0790 128 DLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVP 204 (292)
T ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCC
Confidence 4555555555555555443322222333333322 1 2236788888877654 44444555555433 2
Q ss_pred CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC---------------ChhhHHHHHHHHHHcCCCCChhhHH
Q 002549 828 EDFKKTIQVYQEIQEADLQPDEDSFNTLIIMYCRDC---------------RPEEGLSLMHEMRKLGLEPKLDTYK 888 (909)
Q Consensus 828 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---------------~~~~A~~~~~~~~~~~~~p~~~~~~ 888 (909)
.+.++|...|+++.+.|- ......++ .+...| +...|..++......+.........
T Consensus 205 ~d~~~A~~wy~~Aa~~g~---~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 276 (292)
T COG0790 205 RDLKKAFRWYKKAAEQGD---GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDNACEALR 276 (292)
T ss_pred cCHHHHHHHHHHHHHCCC---HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChhHHHHHH
Confidence 488899999999988553 44555555 555555 7777888888887776665555554
No 365
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=77.49 E-value=92 Score=32.13 Aligned_cols=119 Identities=17% Similarity=0.194 Sum_probs=82.1
Q ss_pred hhhHHHHHHHHHHcCCCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHH---cCCHHHHHH
Q 002549 619 PETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAA---SGCYERARA 695 (909)
Q Consensus 619 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~ 695 (909)
.+.-+.++++++++ +|++...+..++....+.-..++..+.+++++.. .+.+...|...+..... .-.++....
T Consensus 47 ~E~klsilerAL~~--np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~-~~~~~~LW~~yL~~~q~~~~~f~v~~~~~ 123 (321)
T PF08424_consen 47 AERKLSILERALKH--NPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFK-NPGSPELWREYLDFRQSNFASFTVSDVRD 123 (321)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-CCCChHHHHHHHHHHHHHhccCcHHHHHH
Confidence 35566778888875 7788888888888888888888888888888876 56678888877765544 235677777
Q ss_pred HHHHHHHc------CC---CCC-ccc-------HHHHHHHHHhcCchhhHHHHHHHHHhCCC
Q 002549 696 VFNTMMRD------GP---SPT-VDS-------INGLLQALIVDGRLNELYVVIQELQDMDF 740 (909)
Q Consensus 696 ~~~~~~~~------~~---~~~-~~~-------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 740 (909)
+|.+.++. +. .++ ..+ +..+...+.+.|..+.|+.+++-+.+.++
T Consensus 124 ~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 124 VYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 77776553 11 000 111 22233445688999999999999998765
No 366
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=77.33 E-value=78 Score=31.21 Aligned_cols=60 Identities=15% Similarity=0.176 Sum_probs=42.7
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCchhhHHHHHHHHH
Q 002549 676 VWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQALIVDGRLNELYVVIQELQ 736 (909)
Q Consensus 676 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 736 (909)
.++.....|..+|.+.+|.++-++.+..+|- +...+..+++.+...|+--.|.+.++++.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL-~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPL-SEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChh-hhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 3444556777788888888888888776655 66677777777777777766666666554
No 367
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=76.32 E-value=92 Score=35.31 Aligned_cols=76 Identities=14% Similarity=0.100 Sum_probs=31.5
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHH
Q 002549 346 ANVMSEMLDASVKPTLRTYSALICGYAKAGNRLEAEKTFYCMRRSGIRPDHLAYSVMLDIFLRFNETNKAMMLYQEMV 423 (909)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 423 (909)
....+.++.+-...+...-..++..|.+.|-.+.|.++.+.+-..-+ ...-|..-+..+.+.|+......+-..+.
T Consensus 390 ~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~ll 465 (566)
T PF07575_consen 390 RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADRLL 465 (566)
T ss_dssp HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH----------------
T ss_pred HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 33344444332233555566777778888887777777766654311 22345555555666666655555444444
No 368
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=76.04 E-value=4.3 Score=23.05 Aligned_cols=24 Identities=29% Similarity=0.307 Sum_probs=20.2
Q ss_pred hHHHHHHHHhccCCHHHHHHhhcC
Q 002549 886 TYKSLISAFGKQQQLEQAEELLKS 909 (909)
Q Consensus 886 ~~~~l~~~~~~~g~~~~A~~~~~~ 909 (909)
....++.++...|+.++|..++++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHhC
Confidence 345688999999999999998864
No 369
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=75.63 E-value=67 Score=31.23 Aligned_cols=58 Identities=17% Similarity=0.187 Sum_probs=34.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHH-hcCchhhHHHHHHHHH
Q 002549 679 ALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQALI-VDGRLNELYVVIQELQ 736 (909)
Q Consensus 679 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~ 736 (909)
.++..+-+.|+++++...++++...++..+..--+.+..+|- .-|....+..++..+.
T Consensus 6 ~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e 64 (236)
T PF00244_consen 6 YLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIE 64 (236)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHh
Confidence 355666777888888888888887766666666666666653 2344455555554443
No 370
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=74.96 E-value=7.9 Score=26.87 Aligned_cols=39 Identities=18% Similarity=0.110 Sum_probs=29.5
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHH
Q 002549 851 SFNTLIIMYCRDCRPEEGLSLMHEMRKLGLEPKLDTYKSLI 891 (909)
Q Consensus 851 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 891 (909)
....++-++.+.|++++|.++.+.+.+ +.|+......|-
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~Qa~~L~ 41 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLE--IEPDNRQAQSLK 41 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH--HTTS-HHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCcHHHHHHH
Confidence 456788899999999999999999994 477766554443
No 371
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=74.86 E-value=20 Score=33.41 Aligned_cols=120 Identities=9% Similarity=0.063 Sum_probs=74.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccCchHHHHHHHHHHHHCCCCCCH----HhHHHHH
Q 002549 746 SILLMLDAFARSGNIFEVKKIYHGMKAAGYFPTMYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDL----SIWNSML 821 (909)
Q Consensus 746 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~ 821 (909)
|...-++.+.+.+.+.+++...+.-.+.. +.+...-..++..||-.|++++|..-++-.-+ +.|+. ..|..++
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~--l~p~~t~~a~lyr~li 79 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAAT--LSPQDTVGASLYRHLI 79 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhh--cCcccchHHHHHHHHH
Confidence 34445667788899999999998888753 22455666789999999999999998887765 44543 3455555
Q ss_pred HHhhccCCHHHHHHHHHHHHHcCCCCCh-----hhHH--HHHHHHHhcCChhhHHHH-HHHHHHc
Q 002549 822 KLYTGIEDFKKTIQVYQEIQEADLQPDE-----DSFN--TLIIMYCRDCRPEEGLSL-MHEMRKL 878 (909)
Q Consensus 822 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~-----~~~~--~l~~~~~~~g~~~~A~~~-~~~~~~~ 878 (909)
.+ ..+-++..+-+..|.. ..+. .+...-++.+.-.+|.+. .+...+.
T Consensus 80 r~----------ea~R~evfag~~~Pgflg~p~p~wva~L~aala~h~dg~gea~~alreqal~a 134 (273)
T COG4455 80 RC----------EAARNEVFAGGAVPGFLGGPSPEWVAALLAALALHSDGAGEARTALREQALKA 134 (273)
T ss_pred HH----------HHHHHHHhccCCCCCCcCCCCHHHHHHHHHHHhcccCCcchHHHHHHHHHHhh
Confidence 43 2223444455556632 2233 333444555555555544 4444443
No 372
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=74.41 E-value=54 Score=28.09 Aligned_cols=73 Identities=12% Similarity=0.150 Sum_probs=47.7
Q ss_pred CCCHHhHHHHHHHhhcc---CCHHHHHHHHHHHHHcCCCCC--hhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChh
Q 002549 811 KPDLSIWNSMLKLYTGI---EDFKKTIQVYQEIQEADLQPD--EDSFNTLIIMYCRDCRPEEGLSLMHEMRKLGLEPKLD 885 (909)
Q Consensus 811 ~p~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 885 (909)
.+...+-..+.+++.+. .+.++.+.+++.+.+. -.|+ -.....|+-++++.|+|++++++.+.+.+ .+||..
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~-~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~--~e~~n~ 105 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKS-AHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE--TEPNNR 105 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhh-cCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh--hCCCcH
Confidence 34555566666666554 3567777888888752 3443 25566777788888888888888888773 455544
Q ss_pred h
Q 002549 886 T 886 (909)
Q Consensus 886 ~ 886 (909)
.
T Consensus 106 Q 106 (149)
T KOG3364|consen 106 Q 106 (149)
T ss_pred H
Confidence 3
No 373
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=74.30 E-value=4.5 Score=23.64 Aligned_cols=23 Identities=17% Similarity=0.476 Sum_probs=9.9
Q ss_pred HHHHhhccCCHHHHHHHHHHHHH
Q 002549 820 MLKLYTGIEDFKKTIQVYQEIQE 842 (909)
Q Consensus 820 l~~~~~~~g~~~~A~~~~~~~~~ 842 (909)
++..+...|++++|...+++.++
T Consensus 7 ~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 7 LGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHc
Confidence 33334444444444444444443
No 374
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=73.94 E-value=42 Score=26.63 Aligned_cols=54 Identities=26% Similarity=0.250 Sum_probs=29.3
Q ss_pred CCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CcccHHHHHHHHHhcC
Q 002549 670 APVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSP-TVDSINGLLQALIVDG 723 (909)
Q Consensus 670 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g 723 (909)
.|.|......+...+...|+++.|++.+-.+++.++.. +-..-..++..+...|
T Consensus 18 ~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg 72 (90)
T PF14561_consen 18 NPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLG 72 (90)
T ss_dssp STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcC
Confidence 35566666677777777777777777777777655432 2233344444444443
No 375
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=73.87 E-value=98 Score=30.68 Aligned_cols=212 Identities=14% Similarity=0.251 Sum_probs=105.2
Q ss_pred CCHHHHHHHHHHHHH--cCChhHHHHHHHHHHHcCCCCChHHHHHHHHHHHHcCCCCchHHHHHHHHHHHCCCCCCHHHH
Q 002549 112 DTVQVYNAMMGIYAR--NGRFQKVQELLDLMRKRGCEPDLVSFNTLINARLRSGAMVPNLGVDLLNEVRRSGLRPDIITY 189 (909)
Q Consensus 112 ~~~~~~~~l~~~~~~--~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 189 (909)
+.+..++.+|+-|-- .+--++..+++.-+ .|+.++...-..++.+..-+. |. |+..++
T Consensus 109 ~~~qvf~KliRRykyLeK~fE~e~~k~Llfl--k~F~e~Er~KLA~~Tal~l~n-----------------Gt-~~~tvl 168 (412)
T KOG2297|consen 109 NSVQVFQKLIRRYKYLEKNFENEMRKFLLFL--KLFEENERKKLAMLTALLLSN-----------------GT-LPATVL 168 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HccCHHHHHHHHHHHHHHHhC-----------------CC-CCHHHH
Confidence 456778888876543 22222333333322 256777777666666654432 21 222233
Q ss_pred HHHHH-HHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 002549 190 NTIIS-ACSRES-NLEEAMKVYGDLEAHNCQPDLWTYNAMISVYGRCGLFEKAEQLFKELESKGFFPDAVTYNSLLYAFA 267 (909)
Q Consensus 190 ~~li~-~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~ 267 (909)
++|.+ .+.+.| -..-|.++|...... ...+.+++.+.+.+.-+.-.++| +|+..+-..+...+.
T Consensus 169 ~~L~~d~LVkeGi~l~F~~~lFk~~~~E------k~i~~lis~Lrkg~md~rLmeff--------Ppnkrs~E~Fak~Ft 234 (412)
T KOG2297|consen 169 QSLLNDNLVKEGIALSFAVKLFKEWLVE------KDINDLISSLRKGKMDDRLMEFF--------PPNKRSVEHFAKYFT 234 (412)
T ss_pred HHHHHhhHHHHhHHHHHHHHHHHHHHhh------ccHHHHHHHHHhcChHhHHHHhc--------CCcchhHHHHHHHHh
Confidence 33332 222222 224456667665532 23456666665555544444444 566665555555444
Q ss_pred HcCC-----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH-HHHhcCCCCCHH----HHHH
Q 002549 268 REGN-----------VEKVKEISENMLKMGFGKDEMTYNTIIHMYGKQGQHDVALQLYR-DMKLSGRNPDVV----TYTV 331 (909)
Q Consensus 268 ~~g~-----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~----~~~~ 331 (909)
..|- ...+.+-++ ..|..-..+...+++.....+ +|++.+ -|+.. .|+.
T Consensus 235 ~agL~elvey~~~q~~~~a~kElq--------------~~L~~q~s~e~p~~evi~~VKee~k~~n-lPe~eVi~ivWs~ 299 (412)
T KOG2297|consen 235 DAGLKELVEYHRNQQSEGARKELQ--------------KELQEQVSEEDPVKEVILYVKEEMKRNN-LPETEVIGIVWSG 299 (412)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHhccCCCHHHHHHHHHHHHHhcC-CCCceEEeeeHhh
Confidence 4332 222222222 223333334445666655554 455554 46654 5777
Q ss_pred HHHHHHhcCCHHHHHHHH-HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 002549 332 LIDSLGKANKISEAANVM-SEMLDASVKPTLRTYSALICGYAKAGNRLEAE 381 (909)
Q Consensus 332 li~~~~~~g~~~~A~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 381 (909)
++++-- +.+-.++. +..++ ...+|.-|+.+++..|+.+...
T Consensus 300 iMsave----WnKkeelva~qalr-----hlK~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 300 IMSAVE----WNKKEELVAEQALR-----HLKQYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred hhHHHh----hchHHHHHHHHHHH-----HHHhhhHHHHHHhcCChHHHHH
Confidence 766543 22222221 22221 3456888999999999887654
No 376
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=73.83 E-value=18 Score=36.12 Aligned_cols=94 Identities=15% Similarity=0.166 Sum_probs=70.1
Q ss_pred HHHHHHHHHhccCchHHHHHHHHHHHHCCC-CCCH--HhHHHHHHHhhccCCHHHHHHHHHHHHHcCCCCCh-hhHHHHH
Q 002549 781 LYRVMSGLFCKGKRVRDVEAMVSEMKEAGF-KPDL--SIWNSMLKLYTGIEDFKKTIQVYQEIQEADLQPDE-DSFNTLI 856 (909)
Q Consensus 781 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~ 856 (909)
+|.--++-|.+..++..|...|.+-++..+ .||. +.|+.-..+-...|++..|+.=..+++. ++|+. .+|..=+
T Consensus 83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~--~~P~h~Ka~~R~A 160 (390)
T KOG0551|consen 83 NYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALK--LKPTHLKAYIRGA 160 (390)
T ss_pred HHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh--cCcchhhhhhhhh
Confidence 344445667788888899998888876543 2333 5577767777777999999999999999 89965 7777778
Q ss_pred HHHHhcCChhhHHHHHHHHH
Q 002549 857 IMYCRDCRPEEGLSLMHEMR 876 (909)
Q Consensus 857 ~~~~~~g~~~~A~~~~~~~~ 876 (909)
.++....++.+|..+.++..
T Consensus 161 kc~~eLe~~~~a~nw~ee~~ 180 (390)
T KOG0551|consen 161 KCLLELERFAEAVNWCEEGL 180 (390)
T ss_pred HHHHHHHHHHHHHHHHhhhh
Confidence 88888888777777776654
No 377
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=73.36 E-value=92 Score=30.13 Aligned_cols=174 Identities=17% Similarity=0.235 Sum_probs=91.7
Q ss_pred CCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHhCCCCCCHHHH---HHHHHHHHHcCCHhHHHHHHHHHHHC---CC
Q 002549 180 SGLRPDIITYNTIISA-CSRESNLEEAMKVYGDLEAHNCQPDLWTY---NAMISVYGRCGLFEKAEQLFKELESK---GF 252 (909)
Q Consensus 180 ~~~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~---~~ 252 (909)
.+..||+..-|-.-+. -.+...+++|+.-|.+.++.......+.| --+|..+.+.|++++..+.+.++..- .+
T Consensus 20 s~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAV 99 (440)
T KOG1464|consen 20 SNSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAV 99 (440)
T ss_pred cCCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence 3445665443322221 12445778888888887765433334433 44677788888888888887777531 11
Q ss_pred C--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-
Q 002549 253 F--PDAVTYNSLLYAFAREGNVEKVKEISENMLKMG-FGKDEM----TYNTIIHMYGKQGQHDVALQLYRDMKLSGRNP- 324 (909)
Q Consensus 253 ~--~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~- 324 (909)
. -+..+.++++.-.....+.+-..+.++.-.+.- -..|.. |-+.|...|...|++.....+++++..+...-
T Consensus 100 TrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~ed 179 (440)
T KOG1464|consen 100 TRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTED 179 (440)
T ss_pred hccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhcccc
Confidence 1 134456666666655555555544444332210 011211 22456666667777777777766665431111
Q ss_pred ----------CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002549 325 ----------DVVTYTVLIDSLGKANKISEAANVMSEML 353 (909)
Q Consensus 325 ----------~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 353 (909)
-...|..=|..|..+.+-.+-..++++.+
T Consensus 180 GedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqal 218 (440)
T KOG1464|consen 180 GEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQAL 218 (440)
T ss_pred CchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHH
Confidence 11234444555555555555555555543
No 378
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=73.14 E-value=42 Score=27.01 Aligned_cols=45 Identities=18% Similarity=0.258 Sum_probs=29.0
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 002549 170 GVDLLNEVRRSGLRPDIITYNTIISACSRESNLEEAMKVYGDLEA 214 (909)
Q Consensus 170 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 214 (909)
....+..+....+.|++.+..+.+.+|.+-+++.-|.++|+.+..
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~ 73 (108)
T PF02284_consen 29 LRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD 73 (108)
T ss_dssp HHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 444455555566777777888888888888888888888877754
No 379
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=71.98 E-value=5.2 Score=26.40 Aligned_cols=26 Identities=31% Similarity=0.579 Sum_probs=17.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC
Q 002549 679 ALIKAYAASGCYERARAVFNTMMRDG 704 (909)
Q Consensus 679 ~l~~~~~~~g~~~~A~~~~~~~~~~~ 704 (909)
.|..+|...|+.+.|.+++++++..+
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 35666777777777777777776543
No 380
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=71.94 E-value=26 Score=27.77 Aligned_cols=59 Identities=12% Similarity=0.033 Sum_probs=42.0
Q ss_pred HHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHH
Q 002549 657 KAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLL 716 (909)
Q Consensus 657 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 716 (909)
++.+-++.+.....-|++.+..+.+++|.+.+++..|.++|+-+..+... +...|..++
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~-~~~~y~~~l 83 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA-HKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC-chhhHHHHH
Confidence 34445555555556789999999999999999999999999987744222 333455443
No 381
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=71.78 E-value=1.4e+02 Score=31.44 Aligned_cols=54 Identities=20% Similarity=0.130 Sum_probs=24.7
Q ss_pred HHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHH-HcCCHHHHHHHHHHH
Q 002549 647 DAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYA-ASGCYERARAVFNTM 700 (909)
Q Consensus 647 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~ 700 (909)
..+.+.|-+..|.+..+-+.......|+.....+|+.|+ +.++++--+++.+..
T Consensus 111 ~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~ 165 (360)
T PF04910_consen 111 QSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESP 165 (360)
T ss_pred HHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhH
Confidence 344455555555555555554422224444444444433 334444444444443
No 382
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=71.59 E-value=77 Score=30.85 Aligned_cols=61 Identities=10% Similarity=0.128 Sum_probs=44.2
Q ss_pred HHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHH-cCCHHHHHHHHHHHHHc
Q 002549 643 VDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAA-SGCYERARAVFNTMMRD 703 (909)
Q Consensus 643 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~ 703 (909)
..++......+++++..+.++++.+.+...+..-.|.|..+|-. .|....+++++..+...
T Consensus 5 i~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~ 66 (236)
T PF00244_consen 5 IYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQK 66 (236)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhh
Confidence 45677788889999999999999888777787778888777754 36667777777776654
No 383
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=71.47 E-value=8.1 Score=22.43 Aligned_cols=26 Identities=23% Similarity=0.340 Sum_probs=14.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 002549 677 WNALIKAYAASGCYERARAVFNTMMR 702 (909)
Q Consensus 677 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 702 (909)
|..++.++...|+++.|...+...++
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 44455555555555555555555554
No 384
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=70.33 E-value=1.2e+02 Score=30.13 Aligned_cols=86 Identities=9% Similarity=-0.015 Sum_probs=40.2
Q ss_pred HHhcccHHHHHHH----HHHHHhCCCCCCHHHHHHHHHHHhhcCChh-hHHHHHHHHHHc----CCCCCCchHHHHHHHH
Q 002549 578 CEYNERFAEASQV----FSDMRFYNIEPSEDLYRSMVVAYCKMDFPE-TAHFIADQAEKK----GIPFEDLSIYVDIIDA 648 (909)
Q Consensus 578 ~~~~g~~~~A~~~----~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~----~~~~~~~~~~~~l~~~ 648 (909)
+.+.|+..-|.++ ++...+.+..++......++..+...+.-+ .-..+.+.+++. +.+-.++..+..++..
T Consensus 20 ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~ 99 (260)
T PF04190_consen 20 LLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGDPELHHLLAEK 99 (260)
T ss_dssp HHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHHH
T ss_pred HHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCCHHHHHHHHHH
Confidence 3444444443333 333334555666665555555554443221 223333333332 2233356777888888
Q ss_pred hhhcCChHHHHHHHH
Q 002549 649 YGRLKLWQKAESLVG 663 (909)
Q Consensus 649 ~~~~~~~~~A~~~~~ 663 (909)
|.+.|++.+|+..|-
T Consensus 100 ~~~e~~~~~A~~Hfl 114 (260)
T PF04190_consen 100 LWKEGNYYEAERHFL 114 (260)
T ss_dssp HHHTT-HHHHHHHHH
T ss_pred HHhhccHHHHHHHHH
Confidence 888888888776664
No 385
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.10 E-value=2.3e+02 Score=33.45 Aligned_cols=90 Identities=11% Similarity=0.008 Sum_probs=49.2
Q ss_pred HHHhcCchhhHHHHHHHHHhCCCCccHHHHHHHHHHHHhcC--------CHHHHHHH-----HHHHHh--cCCCch----
Q 002549 718 ALIVDGRLNELYVVIQELQDMDFKISKSSILLMLDAFARSG--------NIFEVKKI-----YHGMKA--AGYFPT---- 778 (909)
Q Consensus 718 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--------~~~~a~~~-----~~~~~~--~~~~p~---- 778 (909)
.|......+-++.+++.+....-.++..-.+.++..|.+.= +.+++.+. +..+++ ..+.|.
T Consensus 600 ~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rekl~~~l~~s~~Y~p~~~L~ 679 (877)
T KOG2063|consen 600 NYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREKLLDFLESSDLYDPQLLLE 679 (877)
T ss_pred HHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhhHHHHHHHHhhhhcccCcchhhh
Confidence 35566667777888888877665556665666665554321 12222222 111221 233332
Q ss_pred ----HHHHHHHHHHHhccCchHHHHHHHHHHHH
Q 002549 779 ----MYLYRVMSGLFCKGKRVRDVEAMVSEMKE 807 (909)
Q Consensus 779 ----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 807 (909)
...|.-..-.+.+.|+.++|+.++-..+.
T Consensus 680 ~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~ 712 (877)
T KOG2063|consen 680 RLNGDELYEERAILLGRLGKHEEALHIYVHELD 712 (877)
T ss_pred hccchhHHHHHHHHHhhhhhHHHHHHHHHHHhc
Confidence 23344444455688888888888766654
No 386
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=70.07 E-value=55 Score=26.23 Aligned_cols=51 Identities=18% Similarity=0.198 Sum_probs=24.7
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 002549 300 MYGKQGQHDVALQLYRDMKLSGRNPDVVTYTVLIDSLGKANKISEAANVMSEMLDAS 356 (909)
Q Consensus 300 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 356 (909)
.+...|++++|..+.+.+. .||...|.+|.. .+.|..+++..-+.+|..+|
T Consensus 48 SLmNrG~Yq~Al~l~~~~~----~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 48 SLMNRGDYQSALQLGNKLC----YPDLEPWLALCE--WRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHccchHHHHHHhcCCCC----CchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 3445555555555544442 455555554433 23444444444444444443
No 387
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=70.03 E-value=9.3 Score=28.91 Aligned_cols=49 Identities=8% Similarity=0.025 Sum_probs=38.8
Q ss_pred HHhcCChhhHHHHHHHHHHcCCCC-C-hhhHHHHHHHHhccCCHHHHHHhh
Q 002549 859 YCRDCRPEEGLSLMHEMRKLGLEP-K-LDTYKSLISAFGKQQQLEQAEELL 907 (909)
Q Consensus 859 ~~~~g~~~~A~~~~~~~~~~~~~p-~-~~~~~~l~~~~~~~g~~~~A~~~~ 907 (909)
+..+.+.++|+..+++..+.-..| + ..++.+++.+|+..|++++++++.
T Consensus 16 LY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 16 LYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred HhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446778899999999999743333 3 557888999999999999998764
No 388
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=69.66 E-value=33 Score=27.60 Aligned_cols=58 Identities=10% Similarity=0.017 Sum_probs=38.8
Q ss_pred HHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHH
Q 002549 658 AESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLL 716 (909)
Q Consensus 658 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 716 (909)
..+-+..+.....-|++.+..+.+++|.+.+++..|.++|+-+..+-.. ....|..++
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~-~~~~Y~~~l 86 (108)
T PF02284_consen 29 LRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGN-KKEIYPYIL 86 (108)
T ss_dssp HHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT--TTHHHHHH
T ss_pred HHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC-hHHHHHHHH
Confidence 3444455555556789999999999999999999999999998776332 222566554
No 389
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=69.54 E-value=56 Score=26.07 Aligned_cols=59 Identities=15% Similarity=0.208 Sum_probs=39.0
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 002549 170 GVDLLNEVRRSGLRPDIITYNTIISACSRESNLEEAMKVYGDLEAHNCQPDLWTYNAMIS 229 (909)
Q Consensus 170 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 229 (909)
..+.++.+....+.|++.+..+.+++|.+-+|+.-|.++|+.++... ..+...|..++.
T Consensus 26 ~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~-~~~~~~y~~~lq 84 (103)
T cd00923 26 LRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC-GAHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cCchhhHHHHHH
Confidence 44555566666777888888888888888888888888888766321 223345555543
No 390
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=69.53 E-value=9.7 Score=27.56 Aligned_cols=46 Identities=13% Similarity=0.114 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHH
Q 002549 830 FKKTIQVYQEIQEADLQPDEDSFNTLIIMYCRDCRPEEGLSLMHEMRK 877 (909)
Q Consensus 830 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 877 (909)
+++..++++.+.. ..-|......++.+|...|++++|.++++++.+
T Consensus 6 ~~~~~~~~~~lR~--~RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 6 LEELEELIDSLRA--QRHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--HhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4445555555544 344555566777888888888888888888764
No 391
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=69.00 E-value=1.3e+02 Score=30.19 Aligned_cols=96 Identities=13% Similarity=0.160 Sum_probs=40.1
Q ss_pred HHHHHHHHHhccCchHHHHHHHHHHHH----CCCCCCHHhHHH-HHHHhhccCCHHHHHHHHHHHHHcCCCCChhh-HHH
Q 002549 781 LYRVMSGLFCKGKRVRDVEAMVSEMKE----AGFKPDLSIWNS-MLKLYTGIEDFKKTIQVYQEIQEADLQPDEDS-FNT 854 (909)
Q Consensus 781 ~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~ 854 (909)
.+......||+-|+.+.|++.+.+..+ -|.+-|.+-+.. ++-.|..+.-..+-++..+.+++.|-..+... +..
T Consensus 106 a~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKv 185 (393)
T KOG0687|consen 106 AMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKV 185 (393)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHH
Confidence 334444555555555555555444322 233444432222 22223333334445555555555554443321 112
Q ss_pred HHHHHHh-cCChhhHHHHHHHHH
Q 002549 855 LIIMYCR-DCRPEEGLSLMHEMR 876 (909)
Q Consensus 855 l~~~~~~-~g~~~~A~~~~~~~~ 876 (909)
.-..|+. .-++.+|-.+|-+..
T Consensus 186 Y~Gly~msvR~Fk~Aa~Lfld~v 208 (393)
T KOG0687|consen 186 YQGLYCMSVRNFKEAADLFLDSV 208 (393)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHc
Confidence 2222222 234555555554443
No 392
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=68.93 E-value=17 Score=38.23 Aligned_cols=88 Identities=18% Similarity=0.102 Sum_probs=58.2
Q ss_pred HHHhcccHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHhhcCChhhHHHHHHHHHHcCCCCCCchHHHHHHHHhhhcCCh
Q 002549 577 SCEYNERFAEASQVFSDMRFYNIEPSEDLY-RSMVVAYCKMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLW 655 (909)
Q Consensus 577 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 655 (909)
.+...+.++.|+.++.+.++ ..||...| ..-..++.+.+++-.|+.-...+++ ..|.....|..-+.++.+.+++
T Consensus 13 ~~l~~~~fd~avdlysKaI~--ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie--~dP~~~K~Y~rrg~a~m~l~~~ 88 (476)
T KOG0376|consen 13 EALKDKVFDVAVDLYSKAIE--LDPNCAIYFANRALAHLKVESFGGALHDALKAIE--LDPTYIKAYVRRGTAVMALGEF 88 (476)
T ss_pred hhcccchHHHHHHHHHHHHh--cCCcceeeechhhhhheeechhhhHHHHHHhhhh--cCchhhheeeeccHHHHhHHHH
Confidence 34455677777777777765 35544433 3333666777777777777777776 5577777777777777777777
Q ss_pred HHHHHHHHHHHhc
Q 002549 656 QKAESLVGCLRQR 668 (909)
Q Consensus 656 ~~A~~~~~~~~~~ 668 (909)
.+|...|+.....
T Consensus 89 ~~A~~~l~~~~~l 101 (476)
T KOG0376|consen 89 KKALLDLEKVKKL 101 (476)
T ss_pred HHHHHHHHHhhhc
Confidence 7777777776654
No 393
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=68.30 E-value=69 Score=26.68 Aligned_cols=31 Identities=19% Similarity=0.054 Sum_probs=16.5
Q ss_pred HHHHHHHhcCChhhHHHHHHHH---HH--cCCCCCh
Q 002549 854 TLIIMYCRDCRPEEGLSLMHEM---RK--LGLEPKL 884 (909)
Q Consensus 854 ~l~~~~~~~g~~~~A~~~~~~~---~~--~~~~p~~ 884 (909)
+-+.++-..|+.++|++.|+.. +. +|-.|+.
T Consensus 105 sra~Al~~~Gr~~eA~~~fr~agEMiaERKGE~~~k 140 (144)
T PF12968_consen 105 SRAVALEGLGRKEEALKEFRMAGEMIAERKGEMPGK 140 (144)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHHHH--S--TTH
T ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCCcch
Confidence 3445666778888888777643 32 4555543
No 394
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=68.02 E-value=26 Score=28.10 Aligned_cols=52 Identities=13% Similarity=0.126 Sum_probs=29.1
Q ss_pred ccCCHHHHHHHHHHHHHc---CCCCC-----hhhHHHHHHHHHhcCChhhHHHHHHHHHH
Q 002549 826 GIEDFKKTIQVYQEIQEA---DLQPD-----EDSFNTLIIMYCRDCRPEEGLSLMHEMRK 877 (909)
Q Consensus 826 ~~g~~~~A~~~~~~~~~~---~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 877 (909)
+.|++.+|.+.+.+..+. ...+. ..+...++......|++++|.+.+++.++
T Consensus 10 ~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 10 RSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 345666666655555442 11111 12334556666677777777777777765
No 395
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=67.78 E-value=1.3e+02 Score=29.71 Aligned_cols=66 Identities=15% Similarity=0.167 Sum_probs=52.1
Q ss_pred HHHHhhccCCHHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCChhhHHHHHHHHHH-----cCCCCChhhH
Q 002549 820 MLKLYTGIEDFKKTIQVYQEIQEADLQP-DEDSFNTLIIMYCRDCRPEEGLSLMHEMRK-----LGLEPKLDTY 887 (909)
Q Consensus 820 l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~~ 887 (909)
....|...|.+.+|.++.++.+. +.| +...+..+...|...|+--.|.+-++++.+ .|+.-+..++
T Consensus 285 va~~yle~g~~neAi~l~qr~lt--ldpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsie 356 (361)
T COG3947 285 VARAYLEAGKPNEAIQLHQRALT--LDPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIE 356 (361)
T ss_pred HHHHHHHcCChHHHHHHHHHHhh--cChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHH
Confidence 34567788999999999999999 888 667778899999999998888887777764 4666655443
No 396
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.64 E-value=2.3e+02 Score=32.42 Aligned_cols=103 Identities=9% Similarity=0.090 Sum_probs=64.3
Q ss_pred HHHHHhcCChhHHHHHHHHhhhCCCC--CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChHHHHHHHHHHHHcCC
Q 002549 87 LAVLGKANQENLAVETFMRAESAVDD--TVQVYNAMMGIYARNGRFQKVQELLDLMRKRGCEPDLVSFNTLINARLRSGA 164 (909)
Q Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~ 164 (909)
|+=+.+-+.+++|++.-.......+. ....+-..|..|.-.|++++|-.+.-.|... +..-|--.+.-+...+.
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~~ 438 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELDQ 438 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccccc
Confidence 34455667778887776654443332 3457888889999999999998888888754 56667666666666654
Q ss_pred CCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 002549 165 MVPNLGVDLLNEVRRSGLRPDIITYNTIISACSR 198 (909)
Q Consensus 165 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 198 (909)
.. .++.-+.......+...|..++..|..
T Consensus 439 l~-----~Ia~~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 439 LT-----DIAPYLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred cc-----hhhccCCCCCcccCchHHHHHHHHHHH
Confidence 31 122222222222345567777766665
No 397
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=67.46 E-value=54 Score=26.01 Aligned_cols=58 Identities=17% Similarity=0.094 Sum_probs=41.3
Q ss_pred CCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCC-ChHhHHHHHHHHHHcCCHH
Q 002549 634 IPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPV-DRKVWNALIKAYAASGCYE 691 (909)
Q Consensus 634 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~ 691 (909)
.+|++......++..+...|++++|.+.+-.+++..... +...-..|+..+...|.-+
T Consensus 17 ~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~ 75 (90)
T PF14561_consen 17 ANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGD 75 (90)
T ss_dssp HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCC
Confidence 578899999999999999999999999999988763322 4556666777776666533
No 398
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=66.66 E-value=75 Score=26.48 Aligned_cols=92 Identities=12% Similarity=0.060 Sum_probs=52.5
Q ss_pred HHHHHHHhh--ccCCHHHHHHHHHHHHHc--CCCC----C-----hhhHHHHHHHHHhcCChhhHHHHHHHHHH----cC
Q 002549 817 WNSMLKLYT--GIEDFKKTIQVYQEIQEA--DLQP----D-----EDSFNTLIIMYCRDCRPEEGLSLMHEMRK----LG 879 (909)
Q Consensus 817 ~~~l~~~~~--~~g~~~~A~~~~~~~~~~--~~~p----~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~ 879 (909)
|.+|..+-. ..|-+++|..-+.++++. -++| | ..++..|..++...|++++++.--+..+. .|
T Consensus 10 Y~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRG 89 (144)
T PF12968_consen 10 YMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRG 89 (144)
T ss_dssp HHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcc
Confidence 444444333 236788888888877652 2333 1 22455677889999999998877766664 22
Q ss_pred -CCCC-hhhHHHH----HHHHhccCCHHHHHHhhc
Q 002549 880 -LEPK-LDTYKSL----ISAFGKQQQLEQAEELLK 908 (909)
Q Consensus 880 -~~p~-~~~~~~l----~~~~~~~g~~~~A~~~~~ 908 (909)
+.-| -..|... ..++-..|+.++|.+.|.
T Consensus 90 EL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr 124 (144)
T PF12968_consen 90 ELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFR 124 (144)
T ss_dssp -TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred ccccccchhHHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 2223 2233322 334667899999998775
No 399
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=66.31 E-value=1.3e+02 Score=29.14 Aligned_cols=163 Identities=12% Similarity=0.116 Sum_probs=90.4
Q ss_pred HHHHHHHhhhcCChHHHHHHHHHHHhc---C--CCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCCc----c
Q 002549 642 YVDIIDAYGRLKLWQKAESLVGCLRQR---C--APVDRKVWNALIKAYAASGCYERARAVFNTMMRD--GPSPTV----D 710 (909)
Q Consensus 642 ~~~l~~~~~~~~~~~~A~~~~~~~~~~---~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~----~ 710 (909)
+..++..+.+.+++++-.+.|.+++.. . ...+....|+++.--....+.+.-.++++.-++. +.+ +. .
T Consensus 68 LKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAK-NeRLWFK 146 (440)
T KOG1464|consen 68 LKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAK-NERLWFK 146 (440)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhh-cceeeee
Confidence 344455555555555555555554321 0 0123445566665555555555555555543332 111 22 2
Q ss_pred cHHHHHHHHHhcCchhhHHHHHHHHHhCCCC----cc-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHh-cCCCch
Q 002549 711 SINGLLQALIVDGRLNELYVVIQELQDMDFK----IS-------KSSILLMLDAFARSGNIFEVKKIYHGMKA-AGYFPT 778 (909)
Q Consensus 711 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~-------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~p~ 778 (909)
|-.-|...|...|.+..-.++++++.+.--. .+ -..|..-++.|....+-.+-..+|++.+. ..--|-
T Consensus 147 TNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPH 226 (440)
T KOG1464|consen 147 TNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPH 226 (440)
T ss_pred ccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCc
Confidence 3345777788888888888888887643211 11 13566667888888888888888888764 223355
Q ss_pred HHHHHHHH----HHHhccCchHHHHHHHHHH
Q 002549 779 MYLYRVMS----GLFCKGKRVRDVEAMVSEM 805 (909)
Q Consensus 779 ~~~~~~l~----~~~~~~g~~~~A~~~~~~~ 805 (909)
+.+...+- ....+.|++++|-.-|=++
T Consensus 227 PlImGvIRECGGKMHlreg~fe~AhTDFFEA 257 (440)
T KOG1464|consen 227 PLIMGVIRECGGKMHLREGEFEKAHTDFFEA 257 (440)
T ss_pred hHHHhHHHHcCCccccccchHHHHHhHHHHH
Confidence 54443332 2344678888876544333
No 400
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=65.09 E-value=9 Score=38.25 Aligned_cols=86 Identities=10% Similarity=-0.021 Sum_probs=36.0
Q ss_pred CChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCchhhHHHHH
Q 002549 653 KLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQALIVDGRLNELYVVI 732 (909)
Q Consensus 653 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 732 (909)
|.++.|++.|...++. .|+...+|..-.+++.+.+++..|++=+..+++.++. +...|-.-..+....|+|++|...+
T Consensus 128 G~~~~ai~~~t~ai~l-np~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~D-sa~~ykfrg~A~rllg~~e~aa~dl 205 (377)
T KOG1308|consen 128 GEFDTAIELFTSAIEL-NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPD-SAKGYKFRGYAERLLGNWEEAAHDL 205 (377)
T ss_pred cchhhhhccccccccc-CCchhhhcccccceeeeccCCchhhhhhhhhhccCcc-cccccchhhHHHHHhhchHHHHHHH
Confidence 3344444444444433 2333333333344444444444444444444443332 2222333333333444455554444
Q ss_pred HHHHhCCC
Q 002549 733 QELQDMDF 740 (909)
Q Consensus 733 ~~~~~~~~ 740 (909)
....+.+.
T Consensus 206 ~~a~kld~ 213 (377)
T KOG1308|consen 206 ALACKLDY 213 (377)
T ss_pred HHHHhccc
Confidence 44444443
No 401
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.46 E-value=3.1e+02 Score=32.48 Aligned_cols=27 Identities=26% Similarity=0.487 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHH
Q 002549 116 VYNAMMGIYARNGRFQKVQELLDLMRK 142 (909)
Q Consensus 116 ~~~~l~~~~~~~~~~~~a~~~~~~m~~ 142 (909)
-|..|+..|...|..++|++++.+...
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhc
Confidence 488899999999999999999998865
No 402
>PRK10941 hypothetical protein; Provisional
Probab=63.07 E-value=71 Score=31.70 Aligned_cols=59 Identities=17% Similarity=-0.010 Sum_probs=35.9
Q ss_pred HHHHHHhhcCChhhHHHHHHHHHHcCCCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhc
Q 002549 608 SMVVAYCKMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQR 668 (909)
Q Consensus 608 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 668 (909)
.+..++.+.++++.|....+.++. +.|+++.-+..-+-.|.+.|.+..|..-++..++.
T Consensus 186 nLK~~~~~~~~~~~AL~~~e~ll~--l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 186 TLKAALMEEKQMELALRASEALLQ--FDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 344455566666666666666655 56666666666666666666666666666665544
No 403
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=62.56 E-value=2.8e+02 Score=31.59 Aligned_cols=125 Identities=10% Similarity=-0.049 Sum_probs=74.9
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhcC-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhccCCcccchhhHHHHHHHHHhc
Q 002549 503 ILSSYNVSGRHLEACELIEFVKQHA-SESTPPLTQAFIIMLCKAQKLDAALEEYSNAWGFGFFSKSKTMYESLIHSCEYN 581 (909)
Q Consensus 503 l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 581 (909)
+.-++..-|+.++|..+.+.+.... |-....-..+++.+|+-.|+...-.+++.-+.... ..|+.-...+.-++.-.
T Consensus 507 vGiaL~~ygrqe~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD~--nDDVrRaAVialGFVl~ 584 (929)
T KOG2062|consen 507 VGIALVVYGRQEDADPLIKELLRDKDPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSDV--NDDVRRAAVIALGFVLF 584 (929)
T ss_pred HhHHHHHhhhhhhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCchhhHHHhhccccccc--chHHHHHHHHHheeeEe
Confidence 3456677788888888888877643 11111122345666788888777777776655433 44555555555666677
Q ss_pred ccHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHhhcCChhhHHHHHHHHHH
Q 002549 582 ERFAEASQVFSDMRFYNIEPSEDL--YRSMVVAYCKMDFPETAHFIADQAEK 631 (909)
Q Consensus 582 g~~~~A~~~~~~m~~~~~~p~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~ 631 (909)
.+++....+..-+.+ ...|-... -..+.-+|+-.|. .+|+.+++.+..
T Consensus 585 ~dp~~~~s~V~lLse-s~N~HVRyGaA~ALGIaCAGtG~-~eAi~lLepl~~ 634 (929)
T KOG2062|consen 585 RDPEQLPSTVSLLSE-SYNPHVRYGAAMALGIACAGTGL-KEAINLLEPLTS 634 (929)
T ss_pred cChhhchHHHHHHhh-hcChhhhhhHHHHHhhhhcCCCc-HHHHHHHhhhhc
Confidence 788877777766554 23444332 2334445665555 567777776654
No 404
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=61.40 E-value=3.7e+02 Score=32.68 Aligned_cols=125 Identities=8% Similarity=0.015 Sum_probs=77.2
Q ss_pred ccHHHHHHHHHHHHhcCCHHH-HHHHHHHHHhcCCCchHHHHHHHHHHHhccCchHHHHHHHHHHHHCCCCCCHHhHHHH
Q 002549 742 ISKSSILLMLDAFARSGNIFE-VKKIYHGMKAAGYFPTMYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDLSIWNSM 820 (909)
Q Consensus 742 ~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 820 (909)
++..+-...+.++...+..+. +...+..+.+ .++..+-...+..+.+.|..+.+...+..+++ .+|...-...
T Consensus 754 ~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~---d~d~~VR~~A 827 (897)
T PRK13800 754 ENREVRIAVAKGLATLGAGGAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALR---ASAWQVRQGA 827 (897)
T ss_pred CCHHHHHHHHHHHHHhccccchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhc---CCChHHHHHH
Confidence 444444455556665554432 2344444443 35677777778888888876655555555654 3455555556
Q ss_pred HHHhhccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHH
Q 002549 821 LKLYTGIEDFKKTIQVYQEIQEADLQPDEDSFNTLIIMYCRDCRPEEGLSLMHEMR 876 (909)
Q Consensus 821 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 876 (909)
+.++...+. +++...+-.+++ .|+...-...+.++.+.+....+...+..+.
T Consensus 828 a~aL~~l~~-~~a~~~L~~~L~---D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al 879 (897)
T PRK13800 828 ARALAGAAA-DVAVPALVEALT---DPHLDVRKAAVLALTRWPGDPAARDALTTAL 879 (897)
T ss_pred HHHHHhccc-cchHHHHHHHhc---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 666666654 567777777776 7777777777777777543456777776665
No 405
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=61.30 E-value=19 Score=33.75 Aligned_cols=45 Identities=16% Similarity=0.266 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHH
Q 002549 830 FKKTIQVYQEIQEADLQPDEDSFNTLIIMYCRDCRPEEGLSLMHEMR 876 (909)
Q Consensus 830 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 876 (909)
.+..++..++.++ ..|++..+..++.++...|+.++|.+.++++.
T Consensus 127 l~~~~~~a~~~l~--~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~ 171 (193)
T PF11846_consen 127 LEAYIEWAERLLR--RRPDPNVYQRYALALALLGDPEEARQWLARAR 171 (193)
T ss_pred HHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4445555566666 67777777777777777777777777777776
No 406
>PRK11619 lytic murein transglycosylase; Provisional
Probab=61.30 E-value=3.1e+02 Score=31.65 Aligned_cols=463 Identities=13% Similarity=0.013 Sum_probs=219.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHH
Q 002549 292 MTYNTIIHMYGKQGQHDVALQLYRDMKLSGRNPDVVTYTVLIDSLGKANKISEAANVMSEMLDASVKPTLRT-YSALICG 370 (909)
Q Consensus 292 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~ 370 (909)
..|.....+ .+.|++..+.++...+...-. .....|..+...+ .....++...++++-.. .|-... -..-+..
T Consensus 35 ~~f~~A~~a-~~~g~~~~~~~~~~~l~d~pL-~~yl~y~~L~~~l-~~~~~~ev~~Fl~~~~~---~P~~~~Lr~~~l~~ 108 (644)
T PRK11619 35 QRYQQIKQA-WDNRQMDVVEQLMPTLKDYPL-YPYLEYRQLTQDL-MNQPAVQVTNFIRANPT---LPPARSLQSRFVNE 108 (644)
T ss_pred HHHHHHHHH-HHCCCHHHHHHHHHhccCCCc-HhHHHHHHHHhcc-ccCCHHHHHHHHHHCCC---CchHHHHHHHHHHH
Confidence 344444444 477888888887777653211 1222333333222 23345655555555322 222222 2233344
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHH
Q 002549 371 YAKAGNRLEAEKTFYCMRRSGIRPDHLAYSVMLDIFLRFNETNKAMMLYQEMVSNGFTPDQALYEIMIGVLGRENKGEEI 450 (909)
Q Consensus 371 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a 450 (909)
+.+.+++......+. . .+.+.........+....|+.++|......+=..| ...+..+..++..+.+.|.....
T Consensus 109 La~~~~w~~~~~~~~----~-~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g-~~~p~~cd~l~~~~~~~g~lt~~ 182 (644)
T PRK11619 109 LARREDWRGLLAFSP----E-KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG-KSLPNACDKLFSVWQQSGKQDPL 182 (644)
T ss_pred HHHccCHHHHHHhcC----C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCCChHHHHHHHHHHHcCCCCHH
Confidence 456667766555221 1 23455555666777778888877766666654433 23455666666666655543322
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHhcccHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHHHhcCCC
Q 002549 451 RKVVRDMKELSGINMQEISSILVKGECYDHAAEILRSAIRNGIELDHE-KLLSILSSYNVSGRHLEACELIEFVKQHASE 529 (909)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~d~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 529 (909)
. ++.++ ......++...|..+...+ .++.. ....++.......++..... .. +
T Consensus 183 d-~w~R~------------~~al~~~~~~lA~~l~~~l-----~~~~~~~a~a~~al~~~p~~~~~~~~---~~---~-- 236 (644)
T PRK11619 183 A-YLERI------------RLAMKAGNTGLVTYLAKQL-----PADYQTIASALIKLQNDPNTVETFAR---TT---G-- 236 (644)
T ss_pred H-HHHHH------------HHHHHCCCHHHHHHHHHhc-----ChhHHHHHHHHHHHHHCHHHHHHHhh---cc---C--
Confidence 1 22221 2334456666665555433 22222 22233333333222222111 10 0
Q ss_pred CChhhHHHHHHHHH--hcCCHHHHHHHHHHhhccCCcccch--hhHHHHHHHHHhcccHHHHHHHHHHHHhCCCCCCHHH
Q 002549 530 STPPLTQAFIIMLC--KAQKLDAALEEYSNAWGFGFFSKSK--TMYESLIHSCEYNERFAEASQVFSDMRFYNIEPSEDL 605 (909)
Q Consensus 530 ~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 605 (909)
++.....-++..+. ...+.+.|...+........+++.. ..+..+.......+..++|...++..... ..+...
T Consensus 237 ~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~--~~~~~~ 314 (644)
T PRK11619 237 PTDFTRQMAAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR--SQSTSL 314 (644)
T ss_pred CChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc--cCCcHH
Confidence 11100111111111 2445577888887764443222222 23344443333333355666666654322 123344
Q ss_pred HHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHH
Q 002549 606 YRSMVVAYCKMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYA 685 (909)
Q Consensus 606 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 685 (909)
...-+..-...++++.+...+..+-... .+.....+.+++++...|+.++|...|+.+... ...|..|...
T Consensus 315 ~e~r~r~Al~~~dw~~~~~~i~~L~~~~--~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~-----~~fYG~LAa~-- 385 (644)
T PRK11619 315 LERRVRMALGTGDRRGLNTWLARLPMEA--KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQ-----RGFYPMVAAQ-- 385 (644)
T ss_pred HHHHHHHHHHccCHHHHHHHHHhcCHhh--ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcC-----CCcHHHHHHH--
Confidence 4444444447778877777776654321 134667778888887788888888888887432 1233333322
Q ss_pred HcCCHHHHHHHHHHHHHcCCCC----CcccHHHHHHHHHhcCchhhHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCCHH
Q 002549 686 ASGCYERARAVFNTMMRDGPSP----TVDSINGLLQALIVDGRLNELYVVIQELQDMDFKISKSSILLMLDAFARSGNIF 761 (909)
Q Consensus 686 ~~g~~~~A~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 761 (909)
+.|..-. ... ...+.+ ....-..-+..+...|+..+|...+..+... .+......+...-.+.|..+
T Consensus 386 ~Lg~~~~-~~~-----~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~A~~~g~~~ 456 (644)
T PRK11619 386 RLGEEYP-LKI-----DKAPKPDSALTQGPEMARVRELMYWNMDNTARSEWANLVAS---RSKTEQAQLARYAFNQQWWD 456 (644)
T ss_pred HcCCCCC-CCC-----CCCCchhhhhccChHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCHH
Confidence 1221100 000 000000 0011122345566778888888777777654 23334444555555667777
Q ss_pred HHHHHHHHHHhc-----CCCchHHHHHHHHHHHhccCchHHHHHHHHHHHHCCCCCCHH
Q 002549 762 EVKKIYHGMKAA-----GYFPTMYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDLS 815 (909)
Q Consensus 762 ~a~~~~~~~~~~-----~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 815 (909)
.+.......... .+ |. .|...+..+.+.-.++.++-.---..+.++.|+..
T Consensus 457 ~ai~~~~~~~~~~~~~~rf-p~--~~~~~~~~~a~~~~v~~~lv~ai~rqES~f~p~a~ 512 (644)
T PRK11619 457 LSVQATIAGKLWDHLEERF-PL--AWNDEFRRYTSGKGIPQSYAMAIARQESAWNPKAR 512 (644)
T ss_pred HHHHHHhhchhHHHHHHhC-Cc--chHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCCc
Confidence 666555433211 11 11 24444444444445555554333334555666554
No 407
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=61.27 E-value=1.8e+02 Score=28.91 Aligned_cols=68 Identities=13% Similarity=0.101 Sum_probs=31.1
Q ss_pred HHHcCCCCCHHHHHHHHHHHhccCCHH-HHHHHHHHHHh-----cCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 002549 488 AIRNGIELDHEKLLSILSSYNVSGRHL-EACELIEFVKQ-----HASESTPPLTQAFIIMLCKAQKLDAALEEY 555 (909)
Q Consensus 488 ~~~~~~~~d~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 555 (909)
..+.+.+.|......++......+.-+ +-..+.+.+++ ..+..++.+...++..|.+.|++.+|...|
T Consensus 40 ~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 40 YEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp HHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHH
Confidence 334556666665555555544433211 12222222222 233445667777777777777777777666
No 408
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=61.14 E-value=2.9e+02 Score=31.41 Aligned_cols=139 Identities=17% Similarity=0.225 Sum_probs=79.4
Q ss_pred HHHHhcCchhhHHHHHHHHHhCCCCcc--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccCc
Q 002549 717 QALIVDGRLNELYVVIQELQDMDFKIS--KSSILLMLDAFARSGNIFEVKKIYHGMKAAGYFPTMYLYRVMSGLFCKGKR 794 (909)
Q Consensus 717 ~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 794 (909)
.++...|+-++|-.+.++|.... .|- .....+++-+|+-.|+.....+++.-... +...|+.-+..+.-++.-..+
T Consensus 509 iaL~~ygrqe~Ad~lI~el~~dk-dpilR~~Gm~t~alAy~GTgnnkair~lLh~aVs-D~nDDVrRaAVialGFVl~~d 586 (929)
T KOG2062|consen 509 IALVVYGRQEDADPLIKELLRDK-DPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVS-DVNDDVRRAAVIALGFVLFRD 586 (929)
T ss_pred HHHHHhhhhhhhHHHHHHHhcCC-chhhhhhhHHHHHHHHhccCchhhHHHhhccccc-ccchHHHHHHHHHheeeEecC
Confidence 34455566666666666665433 111 12233456677778888777777776554 223444444444455556677
Q ss_pred hHHHHHHHHHHHHCCCCCCHHh--HHHHHHHhhccCCHHHHHHHHHHHHHcCCCCCh----hhHHHHHHHHHhc
Q 002549 795 VRDVEAMVSEMKEAGFKPDLSI--WNSMLKLYTGIEDFKKTIQVYQEIQEADLQPDE----DSFNTLIIMYCRD 862 (909)
Q Consensus 795 ~~~A~~~~~~~~~~~~~p~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~ 862 (909)
.+......+-+-+ ...|.... -.+|+-+|+-.| ..+|+.+++-|.. .|.. .+...++-.++++
T Consensus 587 p~~~~s~V~lLse-s~N~HVRyGaA~ALGIaCAGtG-~~eAi~lLepl~~---D~~~fVRQgAlIa~amIm~Q~ 655 (929)
T KOG2062|consen 587 PEQLPSTVSLLSE-SYNPHVRYGAAMALGIACAGTG-LKEAINLLEPLTS---DPVDFVRQGALIALAMIMIQQ 655 (929)
T ss_pred hhhchHHHHHHhh-hcChhhhhhHHHHHhhhhcCCC-cHHHHHHHhhhhc---ChHHHHHHHHHHHHHHHHHhc
Confidence 7777777766555 35565532 333444555554 5789999998887 6643 2344444455543
No 409
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=60.73 E-value=97 Score=30.44 Aligned_cols=87 Identities=15% Similarity=0.173 Sum_probs=54.2
Q ss_pred HHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHh----
Q 002549 646 IDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQALIV---- 721 (909)
Q Consensus 646 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 721 (909)
|.++...++|.++....-+--+..-+.-+.+...-|-.|.+.+++....++-..-+..--+-+...|.+++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 3555666666666555444333212223555666667788888888888888888765333345557777655543
Q ss_pred -cCchhhHHHHH
Q 002549 722 -DGRLNELYVVI 732 (909)
Q Consensus 722 -~g~~~~A~~~~ 732 (909)
.|.+.+|.++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 57777777766
No 410
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=60.05 E-value=1.1e+02 Score=26.18 Aligned_cols=62 Identities=18% Similarity=0.253 Sum_probs=39.1
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhC--CCCCHHHHHHHHHHHHHcCChhHHHHHHHH
Q 002549 75 WFSPNARMLATILAVLGKANQENLAVETFMRAESA--VDDTVQVYNAMMGIYARNGRFQKVQELLDL 139 (909)
Q Consensus 75 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 139 (909)
.+..|+..+..-+. |++ ..+.+.++|..+... .......|......+...|++++|.++|..
T Consensus 61 ~Y~nD~RylkiWi~-ya~--~~~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 61 RYKNDERYLKIWIK-YAD--LSSDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp GGTT-HHHHHHHHH-HHT--TBSHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred hhcCCHHHHHHHHH-HHH--HccCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 35566654433332 222 223777888776543 345677888888888888999998888864
No 411
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=59.86 E-value=1.7e+02 Score=28.19 Aligned_cols=65 Identities=14% Similarity=0.105 Sum_probs=48.6
Q ss_pred hHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 002549 640 SIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGP 705 (909)
Q Consensus 640 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 705 (909)
+.+.+....+...|++-++++...+++.. .|-+..+|.--+.+.+..-+.++|.+=|...++..|
T Consensus 231 pLllNy~QC~L~~~e~yevleh~seiL~~-~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldp 295 (329)
T KOG0545|consen 231 PLLLNYCQCLLKKEEYYEVLEHCSEILRH-HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDP 295 (329)
T ss_pred HHHHhHHHHHhhHHHHHHHHHHHHHHHhc-CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCh
Confidence 34555666777778888888888888776 566777777777777777788888888888877544
No 412
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=59.81 E-value=53 Score=34.77 Aligned_cols=49 Identities=12% Similarity=0.218 Sum_probs=31.7
Q ss_pred HHHHHHHHHCCCCCCH--HhHHHHHHHhhccCCHHHHHHHHHHHHHcCCCCCh
Q 002549 799 EAMVSEMKEAGFKPDL--SIWNSMLKLYTGIEDFKKTIQVYQEIQEADLQPDE 849 (909)
Q Consensus 799 ~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 849 (909)
+++-.-+....+.|.. .+...-+..+.+.+++..|..+.+++++ +.|..
T Consensus 283 lELAAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLe--l~p~~ 333 (422)
T PF06957_consen 283 LELAAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLE--LNPSP 333 (422)
T ss_dssp HHHHHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHC--T--SC
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH--cCCCH
Confidence 3444444443455544 3567777888999999999999999999 77754
No 413
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=59.37 E-value=97 Score=29.69 Aligned_cols=99 Identities=10% Similarity=-0.004 Sum_probs=58.4
Q ss_pred chHHHHHHHHhhhcCChHHHHHHHHHHHhc------CCCCC-----------hHhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002549 639 LSIYVDIIDAYGRLKLWQKAESLVGCLRQR------CAPVD-----------RKVWNALIKAYAASGCYERARAVFNTMM 701 (909)
Q Consensus 639 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 701 (909)
..++..-++-+.+.|++.+|..-|.+++.. .-.|. ...+-.+..|+...|++-++++.-..++
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL 257 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL 257 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence 344555566666777777776666654321 01111 2223333455556678888888888888
Q ss_pred HcCCCCCcccHHHHHHHHHhcCchhhHHHHHHHHHhC
Q 002549 702 RDGPSPTVDSINGLLQALIVDGRLNELYVVIQELQDM 738 (909)
Q Consensus 702 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 738 (909)
...+. ++.+|..-..+.+..=+..+|..=|....+.
T Consensus 258 ~~~~~-nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 258 RHHPG-NVKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred hcCCc-hHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 77666 6666666666666555666666666665544
No 414
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=59.29 E-value=1.9e+02 Score=28.74 Aligned_cols=82 Identities=16% Similarity=0.131 Sum_probs=52.8
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH-----HHhcCCCC
Q 002549 251 GFFPDAVTYNSLLYAFAREGNVEKVKEISENMLKM-GFGKDEMTYNTIIHMYGKQGQHDVALQLYRD-----MKLSGRNP 324 (909)
Q Consensus 251 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-----~~~~~~~~ 324 (909)
+-.++..+...++..++..+++.+-.++++..... +...|...|..+|......|+..-...+.++ +++.++..
T Consensus 197 ~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v 276 (292)
T PF13929_consen 197 SKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDV 276 (292)
T ss_pred ccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcC
Confidence 34566677777777777777777777777766654 4556777777777777777776666665543 23344444
Q ss_pred CHHHHHHH
Q 002549 325 DVVTYTVL 332 (909)
Q Consensus 325 ~~~~~~~l 332 (909)
+...-..+
T Consensus 277 ~~~L~~~L 284 (292)
T PF13929_consen 277 TDELRSQL 284 (292)
T ss_pred CHHHHHHH
Confidence 44433333
No 415
>PHA02875 ankyrin repeat protein; Provisional
Probab=57.95 E-value=2e+02 Score=30.93 Aligned_cols=76 Identities=12% Similarity=0.201 Sum_probs=35.1
Q ss_pred HHcCChhHHHHHHHHHHHcCCCCChHH--HHHHHHHHHHcCCCCchHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcC
Q 002549 125 ARNGRFQKVQELLDLMRKRGCEPDLVS--FNTLINARLRSGAMVPNLGVDLLNEVRRSGLRPDII--TYNTIISACSRES 200 (909)
Q Consensus 125 ~~~~~~~~a~~~~~~m~~~g~~~~~~~--~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g 200 (909)
++.|+.+-+..+ .+.|..|+... ..+.+...++.|. .++.+.+.+.|..|+.. ...+.+...+..|
T Consensus 10 ~~~g~~~iv~~L----l~~g~~~n~~~~~g~tpL~~A~~~~~------~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g 79 (413)
T PHA02875 10 ILFGELDIARRL----LDIGINPNFEIYDGISPIKLAMKFRD------SEAIKLLMKHGAIPDVKYPDIESELHDAVEEG 79 (413)
T ss_pred HHhCCHHHHHHH----HHCCCCCCccCCCCCCHHHHHHHcCC------HHHHHHHHhCCCCccccCCCcccHHHHHHHCC
Confidence 344555443333 34465554322 2334444445553 23445555666555432 1122344455667
Q ss_pred CHHHHHHHHH
Q 002549 201 NLEEAMKVYG 210 (909)
Q Consensus 201 ~~~~A~~~~~ 210 (909)
+.+.+..+++
T Consensus 80 ~~~~v~~Ll~ 89 (413)
T PHA02875 80 DVKAVEELLD 89 (413)
T ss_pred CHHHHHHHHH
Confidence 7666555443
No 416
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=56.78 E-value=1e+02 Score=24.80 Aligned_cols=53 Identities=26% Similarity=0.391 Sum_probs=31.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCC
Q 002549 193 ISACSRESNLEEAMKVYGDLEAHNCQPDLWTYNAMISVYGRCGLFEKAEQLFKELESKG 251 (909)
Q Consensus 193 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 251 (909)
+..+.+.|+|++|..+.+.. +.||...|-.|- -.+.|..+++..-+.+|...|
T Consensus 46 lsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALc--e~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 46 LSSLMNRGDYQSALQLGNKL----CYPDLEPWLALC--EWRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHHHccchHHHHHHhcCCC----CCchHHHHHHHH--HHhhccHHHHHHHHHHHHhCC
Confidence 34456667777777666555 356776666653 345666666555555555553
No 417
>PRK11619 lytic murein transglycosylase; Provisional
Probab=56.13 E-value=3.7e+02 Score=31.00 Aligned_cols=52 Identities=10% Similarity=-0.082 Sum_probs=26.4
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002549 335 SLGKANKISEAANVMSEMLDASVKPTLRTYSALICGYAKAGNRLEAEKTFYCM 387 (909)
Q Consensus 335 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 387 (909)
.-...++++.+...+..|.... .-...-..-+.+++...|+.++|...|+.+
T Consensus 321 ~Al~~~dw~~~~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~ 372 (644)
T PRK11619 321 MALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQL 372 (644)
T ss_pred HHHHccCHHHHHHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3335566666666665554321 112233344455555556666666666655
No 418
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.12 E-value=3.1e+02 Score=30.18 Aligned_cols=91 Identities=14% Similarity=0.090 Sum_probs=48.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHH-hcCchhhHHHHHHHHHhC---CCCccHHHHHHHHHHHHhc
Q 002549 682 KAYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQALI-VDGRLNELYVVIQELQDM---DFKISKSSILLMLDAFARS 757 (909)
Q Consensus 682 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~ 757 (909)
..+.+.|.+..|.++-+.+++.+|..|......++..|+ +..+|.=-+++++..... ..-|+...-..++..|.+.
T Consensus 350 ~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~f~l~~ 429 (665)
T KOG2422|consen 350 QSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLALARFFLRK 429 (665)
T ss_pred HHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHHHHHHHhc
Confidence 344556777777777777777666556666666666554 455555555555544322 2234443334444555544
Q ss_pred CC---HHHHHHHHHHHHh
Q 002549 758 GN---IFEVKKIYHGMKA 772 (909)
Q Consensus 758 g~---~~~a~~~~~~~~~ 772 (909)
.. -+.|...+.++..
T Consensus 430 ~~~~~rqsa~~~l~qAl~ 447 (665)
T KOG2422|consen 430 NEEDDRQSALNALLQALK 447 (665)
T ss_pred CChhhHHHHHHHHHHHHH
Confidence 43 3445555555544
No 419
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=55.92 E-value=2.6e+02 Score=29.21 Aligned_cols=30 Identities=10% Similarity=0.184 Sum_probs=16.4
Q ss_pred hHhHHHHHHH--HHHcCCHHHHHHHHHHHHHc
Q 002549 674 RKVWNALIKA--YAASGCYERARAVFNTMMRD 703 (909)
Q Consensus 674 ~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~ 703 (909)
..+|-.++-. +..+.++.+|..+-+..+..
T Consensus 124 i~aY~~lLv~Lfl~d~K~~kea~~~~~~~l~~ 155 (493)
T KOG2581|consen 124 IEAYLYLLVLLFLIDQKEYKEADKISDALLAS 155 (493)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 4444444332 23346777777777666554
No 420
>PHA02875 ankyrin repeat protein; Provisional
Probab=55.83 E-value=2.2e+02 Score=30.67 Aligned_cols=130 Identities=18% Similarity=0.130 Sum_probs=61.7
Q ss_pred HHHHHHHHCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHHcCCHhHHHHHHHHH
Q 002549 172 DLLNEVRRSGLRPDIIT--YNTIISACSRESNLEEAMKVYGDLEAHNCQPDLW--TYNAMISVYGRCGLFEKAEQLFKEL 247 (909)
Q Consensus 172 ~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m 247 (909)
++++.+.+.|..|+... ..+.+...+..|+.+-+ +.+.+.|..|+.. ...+-+...+..|+.+.+..+++
T Consensus 16 ~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v----~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~-- 89 (413)
T PHA02875 16 DIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAI----KLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLD-- 89 (413)
T ss_pred HHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHH----HHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHH--
Confidence 44566667787776432 23444555667776543 3444555444432 11234455667787766555543
Q ss_pred HHCCCCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHhcCCHHHHHHH
Q 002549 248 ESKGFFPDAV---TYNSLLYAFAREGNVEKVKEISENMLKMGFGKDEMT--YNTIIHMYGKQGQHDVALQL 313 (909)
Q Consensus 248 ~~~~~~~~~~---~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~ 313 (909)
.|...+.. .-.+.+...+..|+.+ +++.+.+.|..++... -.+.+...+..|+.+-+..+
T Consensus 90 --~~~~~~~~~~~~g~tpL~~A~~~~~~~----iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~L 154 (413)
T PHA02875 90 --LGKFADDVFYKDGMTPLHLATILKKLD----IMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELL 154 (413)
T ss_pred --cCCcccccccCCCCCHHHHHHHhCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence 22211110 0112233344556653 4444455565443221 12234445566665544333
No 421
>PRK12798 chemotaxis protein; Reviewed
Probab=54.45 E-value=2.9e+02 Score=29.23 Aligned_cols=193 Identities=10% Similarity=0.058 Sum_probs=100.6
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHH-HhcCchhhHHHHHHHHHhC--CCCccHHHHHHHHHHHHhcCCHHHH
Q 002549 687 SGCYERARAVFNTMMRDGPSPTVDSINGLLQAL-IVDGRLNELYVVIQELQDM--DFKISKSSILLMLDAFARSGNIFEV 763 (909)
Q Consensus 687 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a 763 (909)
.|+..+|.+.+..+......+....+-.|+.+- ....++..|+.+|+...=. |.-.....+..-+......|+.+++
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLlaPGTLvEEAALRRsi~la~~~g~~~rf 204 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLLAPGTLVEEAALRRSLFIAAQLGDADKF 204 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHhCCchHHHHHHHHHhhHHHHhcCcHHHH
Confidence 355555555555554443344444444444332 2334455555555544321 2222334445555666778888887
Q ss_pred HHHHHHHHhc-CCCc-hHHHHHHHHHHHhccCchHHHHHHHHHHHHCCCCCCH--HhHHHHHHHhhccCCHHHHHHHHHH
Q 002549 764 KKIYHGMKAA-GYFP-TMYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDL--SIWNSMLKLYTGIEDFKKTIQVYQE 839 (909)
Q Consensus 764 ~~~~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~ 839 (909)
..+-.+.... ...| ....+.-.+..+.+.++-.. .+.+..++.. +.|+. ..|..+...-...|+.+-|.-..++
T Consensus 205 ~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~-~~~l~~~ls~-~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 205 EALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIR-DARLVEILSF-MDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHhccCchHHHHHHHHHHHHHhcccccc-HHHHHHHHHh-cCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 7776666652 2122 11122223333333332211 1224444442 45555 4677777777788999999999999
Q ss_pred HHHcCCCCChhhHHHHH-----HHHHhcCChhhHHHHHHHHHHcCCCCC
Q 002549 840 IQEADLQPDEDSFNTLI-----IMYCRDCRPEEGLSLMHEMRKLGLEPK 883 (909)
Q Consensus 840 ~~~~~~~p~~~~~~~l~-----~~~~~~g~~~~A~~~~~~~~~~~~~p~ 883 (909)
++. +......-...+ -+-.-..+.++|.+.+..+....+.|.
T Consensus 283 A~~--L~~~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~~~L~~~ 329 (421)
T PRK12798 283 ALK--LADPDSADAARARLYRGAALVASDDAESALEELSQIDRDKLSER 329 (421)
T ss_pred HHH--hccCCCcchHHHHHHHHHHccCcccHHHHHHHHhcCChhhCChh
Confidence 988 333222222222 222335567888877777665444444
No 422
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=54.38 E-value=2.2e+02 Score=27.84 Aligned_cols=121 Identities=12% Similarity=0.090 Sum_probs=69.9
Q ss_pred hhhHHHHHHHHHHcCCCCCCchHHHHHHHHhhhc-CChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHH-HHHHH
Q 002549 619 PETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRL-KLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYE-RARAV 696 (909)
Q Consensus 619 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~A~~~ 696 (909)
-+.|.++...++. +.|.+-+++..--..+... .++.+-++.+.++.+. .|.+-.+|..-=......|++. .-+++
T Consensus 59 S~RAl~LT~d~i~--lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~-npKNYQvWHHRr~ive~l~d~s~rELef 135 (318)
T KOG0530|consen 59 SPRALQLTEDAIR--LNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIED-NPKNYQVWHHRRVIVELLGDPSFRELEF 135 (318)
T ss_pred CHHHHHHHHHHHH--hCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHh-CccchhHHHHHHHHHHHhcCcccchHHH
Confidence 3455566555555 5666666665544444333 2455556666666655 3445555554333334445655 66667
Q ss_pred HHHHHHcCCCCCcccHHHHHHHHHhcCchhhHHHHHHHHHhCCCCcc
Q 002549 697 FNTMMRDGPSPTVDSINGLLQALIVDGRLNELYVVIQELQDMDFKIS 743 (909)
Q Consensus 697 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 743 (909)
.+.|+..+.+ +...|..--+++..-+.++.-+.+..++.+.++..+
T Consensus 136 ~~~~l~~DaK-NYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NN 181 (318)
T KOG0530|consen 136 TKLMLDDDAK-NYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNN 181 (318)
T ss_pred HHHHHhcccc-chhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhcc
Confidence 7777765554 666777666666666667666666666666654443
No 423
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=53.76 E-value=1.4e+02 Score=31.63 Aligned_cols=57 Identities=12% Similarity=0.063 Sum_probs=38.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCcc--cHHHHHHHHH--hcCchhhHHHHHHHHHhC
Q 002549 681 IKAYAASGCYERARAVFNTMMRDGPSPTVD--SINGLLQALI--VDGRLNELYVVIQELQDM 738 (909)
Q Consensus 681 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~--~~g~~~~A~~~~~~~~~~ 738 (909)
+..+.+.+++..|.++|+.+... ..++.. .+..+..+|. ..-++.+|.+.++.....
T Consensus 138 a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34455789999999999999886 333332 3444445543 456677888888776654
No 424
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=52.72 E-value=32 Score=20.85 Aligned_cols=26 Identities=12% Similarity=0.436 Sum_probs=16.6
Q ss_pred CHHHHHHHHHHHHHcCCCCChhhHHHHH
Q 002549 829 DFKKTIQVYQEIQEADLQPDEDSFNTLI 856 (909)
Q Consensus 829 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 856 (909)
.++.|..+|++.+. ..|+..+|...+
T Consensus 2 E~dRAR~IyeR~v~--~hp~~k~WikyA 27 (32)
T PF02184_consen 2 EFDRARSIYERFVL--VHPEVKNWIKYA 27 (32)
T ss_pred hHHHHHHHHHHHHH--hCCCchHHHHHH
Confidence 35667777777776 567666665443
No 425
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=52.63 E-value=28 Score=20.46 Aligned_cols=28 Identities=14% Similarity=0.150 Sum_probs=17.1
Q ss_pred ChhHHHHHHHHhhhCCCCCHHHHHHHHH
Q 002549 95 QENLAVETFMRAESAVDDTVQVYNAMMG 122 (909)
Q Consensus 95 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 122 (909)
..+.|..+|.++....+.++..|...+.
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 4556666676666655566666665553
No 426
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=51.62 E-value=1.1e+02 Score=24.48 Aligned_cols=55 Identities=11% Similarity=0.183 Sum_probs=35.1
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHH
Q 002549 834 IQVYQEIQEADLQPDEDSFNTLIIMYCRDCRPEEGLSLMHEMRKLGLEPKLDTYKSL 890 (909)
Q Consensus 834 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 890 (909)
.+.++++..++..--+....+|+-.|.+.|+.+.|..-|+.-. ...|.+..|.-.
T Consensus 57 e~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEK--alFPES~~fmDF 111 (121)
T COG4259 57 EKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETEK--ALFPESGVFMDF 111 (121)
T ss_pred HHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhh--hhCccchhHHHH
Confidence 3455555554444344566678888888888888887777644 456776665433
No 427
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=51.28 E-value=96 Score=31.28 Aligned_cols=94 Identities=16% Similarity=0.105 Sum_probs=66.8
Q ss_pred HHHHHHHhhhcCChHHHHHHHHHHHhc-CCCC--ChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHH
Q 002549 642 YVDIIDAYGRLKLWQKAESLVGCLRQR-CAPV--DRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQA 718 (909)
Q Consensus 642 ~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 718 (909)
+..-++-|.+.+++..|...|.+.++. +..| +...|+.-..+-...|++..|+.=-.+++...|. ....|-.-..+
T Consensus 84 ~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~-h~Ka~~R~Akc 162 (390)
T KOG0551|consen 84 YKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPT-HLKAYIRGAKC 162 (390)
T ss_pred HHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcc-hhhhhhhhhHH
Confidence 344567788888899999888886543 2333 3566766666667779999999988888887666 55555555667
Q ss_pred HHhcCchhhHHHHHHHHH
Q 002549 719 LIVDGRLNELYVVIQELQ 736 (909)
Q Consensus 719 ~~~~g~~~~A~~~~~~~~ 736 (909)
+.+..++.+|+.+.+...
T Consensus 163 ~~eLe~~~~a~nw~ee~~ 180 (390)
T KOG0551|consen 163 LLELERFAEAVNWCEEGL 180 (390)
T ss_pred HHHHHHHHHHHHHHhhhh
Confidence 777888777777776643
No 428
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=50.13 E-value=1.8e+02 Score=29.39 Aligned_cols=123 Identities=12% Similarity=0.036 Sum_probs=81.8
Q ss_pred cCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhc------cCchHHHHHHHHHHHHCCCCCCHH-hHHHHHHHhhccCC
Q 002549 757 SGNIFEVKKIYHGMKAAGYFPTMYLYRVMSGLFCK------GKRVRDVEAMVSEMKEAGFKPDLS-IWNSMLKLYTGIED 829 (909)
Q Consensus 757 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~------~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~ 829 (909)
.+-++++..++++....+. |.++.....|.++.. .-++..-..+|+-+.. ..|+.+ +.|-- -+..+.--
T Consensus 269 r~lI~eg~all~rA~~~~~-pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~--~apSPvV~LNRA-VAla~~~G 344 (415)
T COG4941 269 RALIDEGLALLDRALASRR-PGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQ--AAPSPVVTLNRA-VALAMREG 344 (415)
T ss_pred HHHHHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHH--hCCCCeEeehHH-HHHHHhhh
Confidence 4568889999999988764 888877777665531 2234555666766665 567774 44443 34445555
Q ss_pred HHHHHHHHHHHHHcC-CCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChh
Q 002549 830 FKKTIQVYQEIQEAD-LQPDEDSFNTLIIMYCRDCRPEEGLSLMHEMRKLGLEPKLD 885 (909)
Q Consensus 830 ~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 885 (909)
.+.++.+.+-+.+.+ ++--...+..-+..+.+.|+.+||...|++... +.++..
T Consensus 345 p~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~--La~~~a 399 (415)
T COG4941 345 PAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIA--LARNAA 399 (415)
T ss_pred HHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHH--hcCChH
Confidence 777888888877631 222223444667889999999999999999984 444543
No 429
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=50.04 E-value=1.6e+02 Score=32.69 Aligned_cols=84 Identities=15% Similarity=0.213 Sum_probs=44.1
Q ss_pred ccCchHHHHHHHHHHHHCCCCCCHH------hHHHHHHHhhccCCHHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcC
Q 002549 791 KGKRVRDVEAMVSEMKEAGFKPDLS------IWNSMLKLYTGIEDFKKTIQVYQEIQEADLQPD-EDSFNTLIIMYCRDC 863 (909)
Q Consensus 791 ~~g~~~~A~~~~~~~~~~~~~p~~~------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g 863 (909)
+..++..++++|..-+.. +..|.. ....+-.+|....+++.|.++++++.+ .+|. +.+-..+..+....|
T Consensus 366 ~~~~Y~~s~~~y~~Sl~~-i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~--~d~~~~l~q~~~~~~~~~E~ 442 (872)
T KOG4814|consen 366 KMEKYVVSIRFYKLSLKD-IISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEE--VDRQSPLCQLLMLQSFLAED 442 (872)
T ss_pred HHHHHHHHHHHHHHHHHh-ccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh--hccccHHHHHHHHHHHHHhc
Confidence 445555566665554441 222221 134444455555666666666666666 5553 334444445555566
Q ss_pred ChhhHHHHHHHHHH
Q 002549 864 RPEEGLSLMHEMRK 877 (909)
Q Consensus 864 ~~~~A~~~~~~~~~ 877 (909)
..++|+..+.....
T Consensus 443 ~Se~AL~~~~~~~s 456 (872)
T KOG4814|consen 443 KSEEALTCLQKIKS 456 (872)
T ss_pred chHHHHHHHHHHHh
Confidence 66666666655543
No 430
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=49.49 E-value=2.2e+02 Score=27.41 Aligned_cols=24 Identities=13% Similarity=0.159 Sum_probs=18.5
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCChhh
Q 002549 826 GIEDFKKTIQVYQEIQEADLQPDEDS 851 (909)
Q Consensus 826 ~~g~~~~A~~~~~~~~~~~~~p~~~~ 851 (909)
..++...|+.+++++++ ++|...+
T Consensus 190 d~~~l~~Al~~L~rA~~--l~~k~GV 213 (230)
T PHA02537 190 DAETLQLALALLQRAFQ--LNDKCGV 213 (230)
T ss_pred CcccHHHHHHHHHHHHH--hCCCCCh
Confidence 34678889999999999 7776543
No 431
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=47.85 E-value=2.8e+02 Score=27.13 Aligned_cols=58 Identities=19% Similarity=0.207 Sum_probs=38.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHc-C-CCCCcccHHHHHHHHH-hcCchhhHHHHHHHHHh
Q 002549 680 LIKAYAASGCYERARAVFNTMMRD-G-PSPTVDSINGLLQALI-VDGRLNELYVVIQELQD 737 (909)
Q Consensus 680 l~~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~ 737 (909)
++...-+.+++++.....+++.+. + ...+..--+.|..+|- .-|....+..++..+.+
T Consensus 7 ~Aklaeq~eRyddm~~~mk~~~~~~~~~eLt~EERnLLSvayKn~i~~~R~s~R~i~sie~ 67 (244)
T smart00101 7 MAKLAEQAERYEEMVEFMEKVAKTVDSEELTVEERNLLSVAYKNVIGARRASWRIISSIEQ 67 (244)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHhhhhcccHHHHHHHhHHHH
Confidence 455666778889888888888775 4 2556666666666664 34666666666666544
No 432
>PRK13342 recombination factor protein RarA; Reviewed
Probab=47.73 E-value=3.9e+02 Score=28.81 Aligned_cols=22 Identities=18% Similarity=0.015 Sum_probs=11.4
Q ss_pred CCHHHHHHHHHHHHhcCCCchH
Q 002549 758 GNIFEVKKIYHGMKAAGYFPTM 779 (909)
Q Consensus 758 g~~~~a~~~~~~~~~~~~~p~~ 779 (909)
.+.+.|+..+..|.+.|..|..
T Consensus 244 sd~~aal~~l~~~l~~G~d~~~ 265 (413)
T PRK13342 244 SDPDAALYYLARMLEAGEDPLF 265 (413)
T ss_pred CCHHHHHHHHHHHHHcCCCHHH
Confidence 4555555555555555544443
No 433
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=47.70 E-value=2.9e+02 Score=27.33 Aligned_cols=71 Identities=13% Similarity=0.147 Sum_probs=36.0
Q ss_pred hHHHHHHHHHHHhccCchHHHHHHHHHHHH----CCCCCCHH-hHHHHHHHhhccCCHHHHHHHHHHHHHcCCCCC
Q 002549 778 TMYLYRVMSGLFCKGKRVRDVEAMVSEMKE----AGFKPDLS-IWNSMLKLYTGIEDFKKTIQVYQEIQEADLQPD 848 (909)
Q Consensus 778 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 848 (909)
....+..+++.|++.++.+.+.++..+..+ .|.+-|.. +-.-|+-.|....-.++-++..+-++++|-..+
T Consensus 114 ~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWe 189 (412)
T COG5187 114 GSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWE 189 (412)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHH
Confidence 345555666666666666666655444332 33444432 222233334444445566666666666655553
No 434
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=47.63 E-value=4.7e+02 Score=29.71 Aligned_cols=110 Identities=14% Similarity=0.043 Sum_probs=14.0
Q ss_pred HHHHHHHHHhccCchHHHHHHHHHHHHCCCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHcC-CCCChhhHHHHHHHH
Q 002549 781 LYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDLSIWNSMLKLYTGIEDFKKTIQVYQEIQEAD-LQPDEDSFNTLIIMY 859 (909)
Q Consensus 781 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~~ 859 (909)
++..++.-+.+.|++-+|+..+.+.... ..-+.+++ .++..|+..|... ...+.+.+.... +.+.-.-|..+-+.|
T Consensus 427 I~~~~~~~~~~~~~~g~AL~~~~ra~d~-~~v~~i~~-~ll~~~~~~~~~~-~~~ll~~i~~~~~~~~~L~fla~yreF~ 503 (566)
T PF07575_consen 427 ICKILGQRLLKEGRYGEALSWFIRAGDY-SLVTRIAD-RLLEEYCNNGEPL-DDDLLDNIGSPMLLSQRLSFLAKYREFY 503 (566)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH---------------------------------------------------------
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHCCCH-HHHHHHHH-HHHHHHhcCCCcc-cHHHHHHhcchhhhhhhhHHHHHHHHHH
Confidence 3444444455667777777777666441 11122222 2344555544321 222222222110 111111122222222
Q ss_pred --HhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHH
Q 002549 860 --CRDCRPEEGLSLMHEMRKLGLEPKLDTYKSLISA 893 (909)
Q Consensus 860 --~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 893 (909)
.+.|++.+|.+.+-.+.+....|...-..-|.++
T Consensus 504 ~~~~~~~~~~Aa~~Lv~Ll~~~~~Pk~f~~~LL~d~ 539 (566)
T PF07575_consen 504 ELYDEGDFREAASLLVSLLKSPIAPKSFWPLLLCDA 539 (566)
T ss_dssp ------------------------------------
T ss_pred HHHhhhhHHHHHHHHHHHHCCCCCcHHHHHHHHHHH
Confidence 3458888888888888877777776544444443
No 435
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=47.58 E-value=3.6e+02 Score=28.33 Aligned_cols=64 Identities=14% Similarity=0.186 Sum_probs=43.3
Q ss_pred hHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC---cccHHHHHHHHHhcCchhhHHHHHHHHHhC
Q 002549 674 RKVWNALIKAYAASGCYERARAVFNTMMRDGPSPT---VDSINGLLQALIVDGRLNELYVVIQELQDM 738 (909)
Q Consensus 674 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 738 (909)
...+.-+..-|..+|+++.|++.|.++..- +... +..|-.++..-...|+|........+..+.
T Consensus 150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdY-CTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st 216 (466)
T KOG0686|consen 150 RRALEDLGDHYLDCGQLDNALRCYSRARDY-CTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAEST 216 (466)
T ss_pred HHHHHHHHHHHHHhccHHHHHhhhhhhhhh-hcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhC
Confidence 456778889999999999999999996543 2212 223444455555677777777776665543
No 436
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=47.41 E-value=1.6e+02 Score=24.17 Aligned_cols=84 Identities=19% Similarity=0.231 Sum_probs=42.7
Q ss_pred HcCCCCchHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHH
Q 002549 161 RSGAMVPNLGVDLLNEVRRSGLRPDIITYNTIISACSRESNLEEAMKVYGDLEAHNCQPDLWTYNAMISVYGRCGLFEKA 240 (909)
Q Consensus 161 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 240 (909)
-.|.....+|..+.+-+...+. ...++--.-+..+.+.|+|++|. .. ......||...|-.| +-.+.|--+++
T Consensus 16 atG~HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~AL---l~-~~~~~~pdL~p~~AL--~a~klGL~~~~ 88 (116)
T PF09477_consen 16 ATGHHCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEAL---LL-PQCHCYPDLEPWAAL--CAWKLGLASAL 88 (116)
T ss_dssp HHTTT-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHH---HH-HTTS--GGGHHHHHH--HHHHCT-HHHH
T ss_pred HhhhHHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHH---Hh-cccCCCccHHHHHHH--HHHhhccHHHH
Confidence 3444445566666666655443 12333333445566777777771 11 222235677766666 34567777777
Q ss_pred HHHHHHHHHCC
Q 002549 241 EQLFKELESKG 251 (909)
Q Consensus 241 ~~~~~~m~~~~ 251 (909)
...+.++...|
T Consensus 89 e~~l~rla~~g 99 (116)
T PF09477_consen 89 ESRLTRLASSG 99 (116)
T ss_dssp HHHHHHHCT-S
T ss_pred HHHHHHHHhCC
Confidence 77776665543
No 437
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=45.31 E-value=59 Score=31.99 Aligned_cols=57 Identities=16% Similarity=0.162 Sum_probs=30.3
Q ss_pred HHHHHhhccCCHHHHHHHHHHHHHc----CCCC-ChhhHHHHHHHHHhcCChhhHHHHHHHH
Q 002549 819 SMLKLYTGIEDFKKTIQVYQEIQEA----DLQP-DEDSFNTLIIMYCRDCRPEEGLSLMHEM 875 (909)
Q Consensus 819 ~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 875 (909)
-+...|...|++++|+++++.+... |... ...+...+..|+.+.|+.++.+.+-=+|
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3445566666777777766666431 1111 2234445556666666666655554444
No 438
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=44.73 E-value=1.1e+02 Score=24.52 Aligned_cols=16 Identities=31% Similarity=0.314 Sum_probs=7.8
Q ss_pred hcCCHHHHHHHHHHHH
Q 002549 756 RSGNIFEVKKIYHGMK 771 (909)
Q Consensus 756 ~~g~~~~a~~~~~~~~ 771 (909)
+.|++.+|.+.+.+..
T Consensus 10 ~~~dy~~A~d~L~~~f 25 (94)
T PF12862_consen 10 RSGDYSEALDALHRYF 25 (94)
T ss_pred HcCCHHHHHHHHHHHH
Confidence 4455555544444443
No 439
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=44.46 E-value=1.2e+02 Score=32.21 Aligned_cols=59 Identities=15% Similarity=0.128 Sum_probs=37.6
Q ss_pred HHHHHHhhcCChhhHHHHHHHHH------HcCCCCCCchHHHHHHHHhhhcCChHHHHHHHHHHH
Q 002549 608 SMVVAYCKMDFPETAHFIADQAE------KKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLR 666 (909)
Q Consensus 608 ~l~~~~~~~~~~~~a~~~~~~~~------~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 666 (909)
.++..++-.|++..|++.++... -..+.+-.++++..++.+|...+++.+|.+.|..++
T Consensus 127 gLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 127 GLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666666665554331 122445557777888888888888888888887765
No 440
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=44.44 E-value=3e+02 Score=29.18 Aligned_cols=59 Identities=7% Similarity=0.049 Sum_probs=45.2
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcCCCCChH--HHHHHHHHHHHcCCCCchHHHHHHHHHHHC
Q 002549 121 MGIYARNGRFQKVQELLDLMRKRGCEPDLV--SFNTLINARLRSGAMVPNLGVDLLNEVRRS 180 (909)
Q Consensus 121 ~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~--~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~ 180 (909)
+..+...+++..|.++|..+... ++++.. .+..+..+|..-..++..+|.+.++.....
T Consensus 138 a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34566889999999999999887 665554 566677778777778888888888876653
No 441
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=43.66 E-value=5.6e+02 Score=29.49 Aligned_cols=64 Identities=16% Similarity=0.017 Sum_probs=31.4
Q ss_pred CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--HcCCHHHHHHHHHHHHH
Q 002549 220 DLWTYNAMISVYGRCGLFEKAEQLFKELESKGFFPDAVTYNSLLYAFA--REGNVEKVKEISENMLK 284 (909)
Q Consensus 220 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ll~~~~--~~g~~~~a~~~~~~~~~ 284 (909)
|...-...|++++..|... +...+..........+...-...+.++. .....+.+..++-.+..
T Consensus 503 ~~~~~~~~LkaLgN~g~~~-~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~v~~~l~~I~~ 568 (618)
T PF01347_consen 503 DEEEKIVYLKALGNLGHPE-SIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEKVREILLPIFM 568 (618)
T ss_dssp -HHHHHHHHHHHHHHT-GG-GHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhccCCch-hhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHHHHHHHHHHhc
Confidence 4444555666666666553 4444444433322334444555555555 45556666666665554
No 442
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=43.48 E-value=60 Score=30.42 Aligned_cols=45 Identities=13% Similarity=0.169 Sum_probs=28.1
Q ss_pred HHHHHHHHHCCCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHcCCCC
Q 002549 799 EAMVSEMKEAGFKPDLSIWNSMLKLYTGIEDFKKTIQVYQEIQEADLQP 847 (909)
Q Consensus 799 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 847 (909)
++..++..+ ..|+...+..++.++...|+.++|.+..+++.. +-|
T Consensus 131 ~~~a~~~l~--~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~--lyP 175 (193)
T PF11846_consen 131 IEWAERLLR--RRPDPNVYQRYALALALLGDPEEARQWLARARR--LYP 175 (193)
T ss_pred HHHHHHHHH--hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCC
Confidence 334444443 456666666666666777777777766666666 566
No 443
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=43.34 E-value=3.3e+02 Score=26.71 Aligned_cols=86 Identities=12% Similarity=-0.036 Sum_probs=43.7
Q ss_pred ccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhccCCcccchhhHHHHHHHHHhcccHH-HH
Q 002549 509 VSGRHLEACELIEFVKQHASESTPPLTQAFIIMLCKAQKLDAALEEYSNAWGFGFFSKSKTMYESLIHSCEYNERFA-EA 587 (909)
Q Consensus 509 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~-~A 587 (909)
+......|.++.+.++..+|..-..-.......-.-..++.+-++.++.+.+.. |.+-..|..--......|++. .-
T Consensus 55 ~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~n--pKNYQvWHHRr~ive~l~d~s~rE 132 (318)
T KOG0530|consen 55 KNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDN--PKNYQVWHHRRVIVELLGDPSFRE 132 (318)
T ss_pred ccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC--ccchhHHHHHHHHHHHhcCcccch
Confidence 344555666677776666655433222222211122334555566666666554 666666655444444445544 44
Q ss_pred HHHHHHHHh
Q 002549 588 SQVFSDMRF 596 (909)
Q Consensus 588 ~~~~~~m~~ 596 (909)
+++.+.|..
T Consensus 133 Lef~~~~l~ 141 (318)
T KOG0530|consen 133 LEFTKLMLD 141 (318)
T ss_pred HHHHHHHHh
Confidence 455555543
No 444
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.67 E-value=5.3e+02 Score=28.93 Aligned_cols=85 Identities=13% Similarity=0.112 Sum_probs=49.8
Q ss_pred hhcCChHHHHHHHHHHHhcCCCCC------hHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcC
Q 002549 650 GRLKLWQKAESLVGCLRQRCAPVD------RKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQALIVDG 723 (909)
Q Consensus 650 ~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 723 (909)
.+..+|..+.+.|...... .+.| ......|.-+|....+.+.|.+++.++-+.++. ++.+-..+..+....|
T Consensus 365 F~~~~Y~~s~~~y~~Sl~~-i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~-~~l~q~~~~~~~~~E~ 442 (872)
T KOG4814|consen 365 FKMEKYVVSIRFYKLSLKD-IISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQ-SPLCQLLMLQSFLAED 442 (872)
T ss_pred HHHHHHHHHHHHHHHHHHh-ccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccc-cHHHHHHHHHHHHHhc
Confidence 3445555566665554433 2222 234455666666777777777777777665544 4445455555566667
Q ss_pred chhhHHHHHHHHH
Q 002549 724 RLNELYVVIQELQ 736 (909)
Q Consensus 724 ~~~~A~~~~~~~~ 736 (909)
+.++|+..+....
T Consensus 443 ~Se~AL~~~~~~~ 455 (872)
T KOG4814|consen 443 KSEEALTCLQKIK 455 (872)
T ss_pred chHHHHHHHHHHH
Confidence 7777776666554
No 445
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=42.61 E-value=1.1e+02 Score=25.21 Aligned_cols=27 Identities=26% Similarity=0.516 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHH
Q 002549 116 VYNAMMGIYARNGRFQKVQELLDLMRK 142 (909)
Q Consensus 116 ~~~~l~~~~~~~~~~~~a~~~~~~m~~ 142 (909)
-|..|+..|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 488999999999999999999998876
No 446
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=41.98 E-value=29 Score=29.50 Aligned_cols=34 Identities=21% Similarity=0.343 Sum_probs=24.3
Q ss_pred HHHHcCChhHHHHHHHHHHHcCCCCChHHHHHHHHH
Q 002549 123 IYARNGRFQKVQELLDLMRKRGCEPDLVSFNTLINA 158 (909)
Q Consensus 123 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~ 158 (909)
.+...|.-.+|-.+|..|++.|-+||. |+.|+..
T Consensus 104 tlR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 104 TLRAYGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred chhhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 344456677788889999988888874 5666654
No 447
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=41.43 E-value=2.3e+02 Score=24.44 Aligned_cols=30 Identities=13% Similarity=0.206 Sum_probs=23.1
Q ss_pred HHHHHHhhccCCHHHHHHHHHHHHHcCCCC
Q 002549 818 NSMLKLYTGIEDFKKTIQVYQEIQEADLQP 847 (909)
Q Consensus 818 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 847 (909)
..++--+...|+++.|+.+.+-++++|+..
T Consensus 52 ~~~mvW~~D~Gd~~~AL~~a~yAi~~~l~~ 81 (132)
T PF05944_consen 52 MTVMVWLFDVGDFDGALDIAEYAIEHGLPM 81 (132)
T ss_pred HhhHhhhhcccCHHHHHHHHHHHHHcCCCc
Confidence 345556778899999999999999887654
No 448
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=41.12 E-value=33 Score=29.19 Aligned_cols=33 Identities=30% Similarity=0.410 Sum_probs=22.6
Q ss_pred HhccCchHHHHHHHHHHHHCCCCCCHHhHHHHHHH
Q 002549 789 FCKGKRVRDVEAMVSEMKEAGFKPDLSIWNSMLKL 823 (909)
Q Consensus 789 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 823 (909)
+.+.|.-.+|..+|++|++.|-+||. |+.|+..
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 34556677788888888888877776 5555544
No 449
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=40.35 E-value=1.3e+02 Score=28.55 Aligned_cols=101 Identities=14% Similarity=0.121 Sum_probs=52.6
Q ss_pred CCchHHHHHHHHHHHhccCchHHHHHHHHHHHHCCCCC---CHHh--HHHHHHHhhccCCHHHHHHHHHHHHHcCCCCCh
Q 002549 775 YFPTMYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKP---DLSI--WNSMLKLYTGIEDFKKTIQVYQEIQEADLQPDE 849 (909)
Q Consensus 775 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 849 (909)
+.+...-+|.|+--|.-..-+.+|-+.|.+-. |++| |..+ -..-+......|+.++|++..+++--.=+.-|.
T Consensus 22 ~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~--~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~ 99 (228)
T KOG2659|consen 22 VSVMREDLNRLVMNYLVHEGYVEAAEKFAKES--GIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNR 99 (228)
T ss_pred cCcchhhHHHHHHHHHHhccHHHHHHHhcccc--CCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccch
Confidence 34555556666555554444555555444332 3444 2222 233455556778888888777665321122222
Q ss_pred hhHHHHH----HHHHhcCChhhHHHHHHHHHH
Q 002549 850 DSFNTLI----IMYCRDCRPEEGLSLMHEMRK 877 (909)
Q Consensus 850 ~~~~~l~----~~~~~~g~~~~A~~~~~~~~~ 877 (909)
..+..|- --+.+.|..++|+++.+.=..
T Consensus 100 ~l~F~Lq~q~lIEliR~~~~eeal~F~q~~LA 131 (228)
T KOG2659|consen 100 ELFFHLQQLHLIELIREGKTEEALEFAQTKLA 131 (228)
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHHHHHHHHcc
Confidence 2233222 234467788888888776543
No 450
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=40.10 E-value=2.1e+02 Score=23.62 Aligned_cols=25 Identities=12% Similarity=0.162 Sum_probs=10.7
Q ss_pred HHHHHHHHHhcCchhhHHHHHHHHH
Q 002549 712 INGLLQALIVDGRLNELYVVIQELQ 736 (909)
Q Consensus 712 ~~~l~~~~~~~g~~~~A~~~~~~~~ 736 (909)
|..|+..|...|..++|++++.++.
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~ 66 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLA 66 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHh
Confidence 3344444444444444444444433
No 451
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=39.50 E-value=79 Score=22.90 Aligned_cols=22 Identities=27% Similarity=0.294 Sum_probs=10.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 002549 331 VLIDSLGKANKISEAANVMSEM 352 (909)
Q Consensus 331 ~li~~~~~~g~~~~A~~~~~~~ 352 (909)
.+|.+|...|++++|.+++.++
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
Confidence 3444445555555555444444
No 452
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=39.10 E-value=4.5e+02 Score=27.01 Aligned_cols=190 Identities=15% Similarity=0.067 Sum_probs=0.0
Q ss_pred HHHHHHcCCCCchHHHHHHHHH-HHCCCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHH---------HHhCCCCCC
Q 002549 156 INARLRSGAMVPNLGVDLLNEV-RRSGLRPDIITYNTIISACSRES-----NLEEAMKVYGD---------LEAHNCQPD 220 (909)
Q Consensus 156 l~~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~li~~~~~~g-----~~~~A~~~~~~---------~~~~~~~~~ 220 (909)
+-++++.|......++.++..+ .. .++...+..++..+.... ..+.....|.. +.+.|..+.
T Consensus 45 ~~al~~~g~~~~~~~l~l~~~~~~~---E~~~~vw~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~ 121 (324)
T PF11838_consen 45 LFALARAGRLSYSDFLDLLEYLLPN---ETDYVVWSTALSNLSSLRNRLYAEDEELQEAFRKFVRRLLEPLYERLGWDPR 121 (324)
T ss_dssp HHHHHHTTSS-HHHHHHHHGGG-GT-----SHHHHHHHHHHHHHHHHHHCSC-HHHHHHHHHHHHHHHHHHHHH--SSSS
T ss_pred HHHHHHcCCCCHHHHHHHHHHhccC---CCchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCCCCc
Q ss_pred --HHHHHHHHHHH-HHcCC-----HhHHHHHHHHHHHCCC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 002549 221 --LWTYNAMISVY-GRCGL-----FEKAEQLFKELESKGF----FPDAVTYNSLLYAFAREGNVEKVKEISENMLKMGFG 288 (909)
Q Consensus 221 --~~~~~~li~~~-~~~g~-----~~~A~~~~~~m~~~~~----~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 288 (909)
......+++.. ....- .++|.+.|+.....+. ..+......++....+.|+.+.-..+++.... .
T Consensus 122 ~~~~~~~~~lr~~~~~~a~~~~~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~---~ 198 (324)
T PF11838_consen 122 PGEDHNDRLLRALLLSLACGDPECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKN---S 198 (324)
T ss_dssp --SCHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHT---T
T ss_pred ccccHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhc---c
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH-HhcCCHHHHHHHHHH
Q 002549 289 KDEMTYNTIIHMYGKQGQHDVALQLYRDMKLSGRNPDVVTYTVLIDSL-GKANKISEAANVMSE 351 (909)
Q Consensus 289 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~-~~~g~~~~A~~~~~~ 351 (909)
++......++.+++...+.+...++++.....+..+.......+.... ....-.+.+.+.+..
T Consensus 199 ~~~~~k~~~l~aLa~~~d~~~~~~~l~~~l~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (324)
T PF11838_consen 199 TSPEEKRRLLSALACSPDPELLKRLLDLLLSNDKVRSQDIRYVLAGLASSNPVGRDLAWEFFKE 262 (324)
T ss_dssp STHHHHHHHHHHHTT-S-HHHHHHHHHHHHCTSTS-TTTHHHHHHHHH-CSTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHhhhccCCHHHHHHHHHHHcCCcccccHHHHHHHHHHhcCChhhHHHHHHHHHH
No 453
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=38.66 E-value=4.2e+02 Score=26.54 Aligned_cols=118 Identities=9% Similarity=0.037 Sum_probs=69.4
Q ss_pred cCChhHHHHHHHHHHH-cCCCCChHHHHHHHHHHHH-cCCCCchHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhcCCHH
Q 002549 127 NGRFQKVQELLDLMRK-RGCEPDLVSFNTLINARLR-SGAMVPNLGVDLLNEVR-RSGLRPDIITYNTIISACSRESNLE 203 (909)
Q Consensus 127 ~~~~~~a~~~~~~m~~-~g~~~~~~~~~~ll~~~~~-~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~li~~~~~~g~~~ 203 (909)
+..+-+|+.+|+.... ..+--|..+-..+++.... .+. ....-.++.+-+. +.|-.++..+...++..+++.+++.
T Consensus 141 N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~-~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~ 219 (292)
T PF13929_consen 141 NKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENT-KLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWN 219 (292)
T ss_pred hHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhcccc-chhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHH
Confidence 3445667777763221 2234456666666666655 222 1111122333222 2245666777777788888888888
Q ss_pred HHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHhHHHHHHH
Q 002549 204 EAMKVYGDLEAH-NCQPDLWTYNAMISVYGRCGLFEKAEQLFK 245 (909)
Q Consensus 204 ~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 245 (909)
.-.+.++..... +...|...|..+|+.-...|+..-..++..
T Consensus 220 kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 220 KLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred HHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 888877766544 445677778888888888887765555443
No 454
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=38.19 E-value=58 Score=20.44 Aligned_cols=18 Identities=6% Similarity=0.176 Sum_probs=8.8
Q ss_pred HHHHHhhccCCHHHHHHH
Q 002549 819 SMLKLYTGIEDFKKTIQV 836 (909)
Q Consensus 819 ~l~~~~~~~g~~~~A~~~ 836 (909)
++...+...|++++|+.+
T Consensus 6 ~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 6 GLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHH
Confidence 344444555555555555
No 455
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=38.17 E-value=1.8e+02 Score=26.67 Aligned_cols=21 Identities=19% Similarity=0.276 Sum_probs=12.5
Q ss_pred HHhhccCCHHHHHHHHHHHHH
Q 002549 822 KLYTGIEDFKKTIQVYQEIQE 842 (909)
Q Consensus 822 ~~~~~~g~~~~A~~~~~~~~~ 842 (909)
..|.+.|.+++|.+++++...
T Consensus 119 ~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 119 AVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHhcCchHHHHHHHHHHhc
Confidence 455566666666666666555
No 456
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=37.93 E-value=4.4e+02 Score=26.62 Aligned_cols=80 Identities=9% Similarity=-0.002 Sum_probs=53.8
Q ss_pred HHHHHHHHH-cCCCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHH----HHHHHHHHcCCHHHHHHHH
Q 002549 623 HFIADQAEK-KGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWN----ALIKAYAASGCYERARAVF 697 (909)
Q Consensus 623 ~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~~~~A~~~~ 697 (909)
...++.+.+ .++.|+...+....+.....+|++..|...+=.......++|.-..+ .+++- +-.-+|+.|.+-+
T Consensus 112 ~~~l~~L~e~ynf~~e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~d~n~lsalwGKlASE-IL~qnWd~A~edL 190 (432)
T KOG2758|consen 112 VQNLQHLQEHYNFTPERIETLYKYAKFQYECGNYSGASDYLYFYRALVSDPDRNYLSALWGKLASE-ILTQNWDGALEDL 190 (432)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHhcCCcchhhHHHHHHHHHHH-HHHhhHHHHHHHH
Confidence 334444433 67888889999999999999999999988766555443455553333 33322 2346889998888
Q ss_pred HHHHHc
Q 002549 698 NTMMRD 703 (909)
Q Consensus 698 ~~~~~~ 703 (909)
.++.+.
T Consensus 191 ~rLre~ 196 (432)
T KOG2758|consen 191 TRLREY 196 (432)
T ss_pred HHHHHH
Confidence 776653
No 457
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=37.76 E-value=5.1e+02 Score=27.29 Aligned_cols=94 Identities=12% Similarity=0.036 Sum_probs=53.1
Q ss_pred hHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCC--ChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcC---------CCCC
Q 002549 640 SIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPV--DRKVWNALIKAYAASGCYERARAVFNTMMRDG---------PSPT 708 (909)
Q Consensus 640 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---------~~~~ 708 (909)
..+..+++-|..+|+++.|.+.|.++...+... ....|-.++..-+..|+|.....+..++...- ..+.
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 345567777888888888888888766543221 23344455555556677777666666665430 1112
Q ss_pred cccHHHHHHHHHhcCchhhHHHHHHHH
Q 002549 709 VDSINGLLQALIVDGRLNELYVVIQEL 735 (909)
Q Consensus 709 ~~~~~~l~~~~~~~g~~~~A~~~~~~~ 735 (909)
..++..+... ..+++..|.+.|-..
T Consensus 231 l~C~agLa~L--~lkkyk~aa~~fL~~ 255 (466)
T KOG0686|consen 231 LKCAAGLANL--LLKKYKSAAKYFLLA 255 (466)
T ss_pred hHHHHHHHHH--HHHHHHHHHHHHHhC
Confidence 2333333333 334677766666443
No 458
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.33 E-value=6.2e+02 Score=28.11 Aligned_cols=134 Identities=11% Similarity=0.091 Sum_probs=84.5
Q ss_pred hHhHHHHHHHHHHcCCHHHHHHHHHHHH-------HcCCCCC------------ccc-HH---HHHHHHHhcCchhhHHH
Q 002549 674 RKVWNALIKAYAASGCYERARAVFNTMM-------RDGPSPT------------VDS-IN---GLLQALIVDGRLNELYV 730 (909)
Q Consensus 674 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~~~------------~~~-~~---~l~~~~~~~g~~~~A~~ 730 (909)
+...-.+..++..+|+.+.|.++.++.+ .-...|. ... |- .-+..+.+.|-|..|.+
T Consensus 284 vdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E 363 (665)
T KOG2422|consen 284 VDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALE 363 (665)
T ss_pred hhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHH
Confidence 3344455667778888877777666643 2112221 111 21 22344567899999999
Q ss_pred HHHHHHhCCCCccHHHHHHHHHHH-HhcCCHHHHHHHHHHHHh---cCCCchHHHHHHHHHHHhccCc---hHHHHHHHH
Q 002549 731 VIQELQDMDFKISKSSILLMLDAF-ARSGNIFEVKKIYHGMKA---AGYFPTMYLYRVMSGLFCKGKR---VRDVEAMVS 803 (909)
Q Consensus 731 ~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~a~~~~~~~~~---~~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~ 803 (909)
+.+-+.+.+...|+.....+|+.| .++.+++=.+++++.... ....||..--..++..|..... ...|+..+.
T Consensus 364 ~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~ 443 (665)
T KOG2422|consen 364 WCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLALARFFLRKNEEDDRQSALNALL 443 (665)
T ss_pred HHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHHHHHHHhcCChhhHHHHHHHHH
Confidence 999999988777888888889887 467777777777777744 2334665555566666665444 334555555
Q ss_pred HHHH
Q 002549 804 EMKE 807 (909)
Q Consensus 804 ~~~~ 807 (909)
++..
T Consensus 444 qAl~ 447 (665)
T KOG2422|consen 444 QALK 447 (665)
T ss_pred HHHH
Confidence 5543
No 459
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=37.07 E-value=7.8e+02 Score=29.25 Aligned_cols=74 Identities=12% Similarity=-0.031 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHH-cCCCCChhhHHHHHHHHhccCCHHHH
Q 002549 830 FKKTIQVYQEIQEADLQPDEDSFNTLIIMYCRDCRPEEGLSLMHEMRK-LGLEPKLDTYKSLISAFGKQQQLEQA 903 (909)
Q Consensus 830 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~g~~~~A 903 (909)
.+.-.+.|.++++==-.-|+.++..-.+-+...|++..|++++.++.+ .+..++.+.|..++..+-..|.-..|
T Consensus 1212 ld~~~e~y~el~kw~d~~dsK~~~~a~~ha~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lgw~H~~ 1286 (1304)
T KOG1114|consen 1212 LDSYNENYQELLKWLDASDSKVWQIAKKHAKALGQYGRALKALLKLIEENGESATKDVAVLLAELLENLGWNHLA 1286 (1304)
T ss_pred hhhHHHHHHHHHHHhhcCCchheehhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhCchHhH
Confidence 555666777776510122455665556666778999999999999987 67788888888888888777776543
No 460
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=36.84 E-value=99 Score=30.74 Aligned_cols=76 Identities=14% Similarity=0.177 Sum_probs=43.3
Q ss_pred CCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHH-HHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccH
Q 002549 635 PFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNA-LIKAYAASGCYERARAVFNTMMRDGPSPTVDSI 712 (909)
Q Consensus 635 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 712 (909)
-|+++..|...+.-..+.|.+.+.-.+|.++++. .|.++..|-. -..-+...++++.+..+|.+.++.++. ++..|
T Consensus 103 ff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~k-hP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~-~p~iw 179 (435)
T COG5191 103 FFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTK-HPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSR-SPRIW 179 (435)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCC-CchHH
Confidence 3445555555555555555556666666666655 4556555533 223344567777777777777776555 44444
No 461
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=36.51 E-value=2.7e+02 Score=23.78 Aligned_cols=42 Identities=14% Similarity=0.086 Sum_probs=25.1
Q ss_pred HHHHHHHHHHcCCCCCCchHHHHHHHHhhhcCChHHHHHHHH
Q 002549 622 AHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVG 663 (909)
Q Consensus 622 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 663 (909)
...+|..+..+++--.....|...+..+...|++.+|.++|+
T Consensus 82 p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 82 PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 455666666666655555555555556666666666666554
No 462
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=36.27 E-value=1.4e+02 Score=30.45 Aligned_cols=63 Identities=22% Similarity=0.337 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHCCCCCCHH----hHHHHHHHhhccCCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 002549 796 RDVEAMVSEMKEAGFKPDLS----IWNSMLKLYTGIEDFKKTIQVYQEIQEADLQPDEDSFNTLIIMYC 860 (909)
Q Consensus 796 ~~A~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 860 (909)
++.+.++.++++ .-|+.. -|..++......|.++..+.+|++++..|..|-...-..+++.+-
T Consensus 120 eei~~~L~~li~--~IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 120 EEILATLSDLIK--NIPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHHh--cCchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 455666666655 234442 245555555555666666666666666555554444444444443
No 463
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=36.07 E-value=4e+02 Score=25.60 Aligned_cols=38 Identities=29% Similarity=0.225 Sum_probs=25.7
Q ss_pred CccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchH
Q 002549 741 KISKSSILLMLDAFARSGNIFEVKKIYHGMKAAGYFPTM 779 (909)
Q Consensus 741 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~ 779 (909)
.|.+.....++..|. .+++++|.++++++.+.|+.|..
T Consensus 236 ~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~D 273 (333)
T KOG0991|consen 236 EPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPED 273 (333)
T ss_pred CCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHHH
Confidence 456665555665554 46788888888888887777643
No 464
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=35.89 E-value=1.4e+02 Score=20.23 Aligned_cols=29 Identities=24% Similarity=0.403 Sum_probs=12.6
Q ss_pred HcCCHhHHHHHHHHHHHCCCCCCHHHHHH
Q 002549 233 RCGLFEKAEQLFKELESKGFFPDAVTYNS 261 (909)
Q Consensus 233 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 261 (909)
+.|-..++..++++|.+.|+..+...+..
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~ 42 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEE 42 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHH
Confidence 33444444444444444444444444433
No 465
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=35.44 E-value=86 Score=33.11 Aligned_cols=25 Identities=8% Similarity=-0.016 Sum_probs=12.4
Q ss_pred ccHHHHHHHHHhcCchhhHHHHHHH
Q 002549 710 DSINGLLQALIVDGRLNELYVVIQE 734 (909)
Q Consensus 710 ~~~~~l~~~~~~~g~~~~A~~~~~~ 734 (909)
.++..++-+|...+++.+|++.|..
T Consensus 165 s~~YyvGFaylMlrRY~DAir~f~~ 189 (404)
T PF10255_consen 165 STYYYVGFAYLMLRRYADAIRTFSQ 189 (404)
T ss_pred ehHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555555544
No 466
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=35.03 E-value=7.5e+02 Score=28.42 Aligned_cols=52 Identities=13% Similarity=0.182 Sum_probs=31.0
Q ss_pred HHHHhccCchHHHHHHHHHHHHCCCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHcCCCCChhhH
Q 002549 786 SGLFCKGKRVRDVEAMVSEMKEAGFKPDLSIWNSMLKLYTGIEDFKKTIQVYQEIQEADLQPDEDSF 852 (909)
Q Consensus 786 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 852 (909)
-..+++.|.++.-.+.++-.. ...+-.-.+++.+|++..+.|.+ ++|-...+
T Consensus 351 n~LlgrKG~leklq~YWdV~~-------------y~~asVLAnd~~kaiqAae~mfK--Lk~P~WYL 402 (1226)
T KOG4279|consen 351 NSLLGRKGALEKLQEYWDVAT-------------YFEASVLANDYQKAIQAAEMMFK--LKPPVWYL 402 (1226)
T ss_pred HHHhhccchHHHHHHHHhHHH-------------hhhhhhhccCHHHHHHHHHHHhc--cCCceehH
Confidence 344567776665555554332 12233345788888888888888 77754433
No 467
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.74 E-value=75 Score=36.46 Aligned_cols=126 Identities=12% Similarity=0.067 Sum_probs=74.3
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccCchHHHHHHHHHHHHCCCCCCHHhHHHHHHHhhccCCHHH
Q 002549 753 AFARSGNIFEVKKIYHGMKAAGYFPTMYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDLSIWNSMLKLYTGIEDFKK 832 (909)
Q Consensus 753 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 832 (909)
.+...|+++.|++...++- +..+|..|+..-.++|+.+-|+-.|++... |..|--.|.-.|+.++
T Consensus 652 LaLe~gnle~ale~akkld------d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eK 716 (1202)
T KOG0292|consen 652 LALECGNLEVALEAAKKLD------DKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEK 716 (1202)
T ss_pred eehhcCCHHHHHHHHHhcC------cHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHH
Confidence 3455788888877766553 456788888888888888888888877654 2333344566788777
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHhhc
Q 002549 833 TIQVYQEIQEADLQPDEDSFNTLIIMYCRDCRPEEGLSLMHEMRKLGLEPKLDTYKSLISAFGKQQQLEQAEELLK 908 (909)
Q Consensus 833 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 908 (909)
-.++.+.+.. +.|.. ...-.++. .|+.++=.++++.. |..|-... .-.-+|.-++|.++.+
T Consensus 717 L~Km~~iae~---r~D~~--~~~qnalY-l~dv~ervkIl~n~---g~~~layl------ta~~~G~~~~ae~l~e 777 (1202)
T KOG0292|consen 717 LSKMMKIAEI---RNDAT--GQFQNALY-LGDVKERVKILENG---GQLPLAYL------TAAAHGLEDQAEKLGE 777 (1202)
T ss_pred HHHHHHHHHh---hhhhH--HHHHHHHH-hccHHHHHHHHHhc---CcccHHHH------HHhhcCcHHHHHHHHH
Confidence 6665554432 22222 12222232 56777777766654 44433211 1234566666666543
No 468
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=34.22 E-value=1.5e+02 Score=20.08 Aligned_cols=31 Identities=19% Similarity=0.255 Sum_probs=16.4
Q ss_pred HcCCHhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 002549 408 RFNETNKAMMLYQEMVSNGFTPDQALYEIMI 438 (909)
Q Consensus 408 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll 438 (909)
+.|-..++..++++|.+.|+..+...+..++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 4455555555555555555555555544443
No 469
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=33.36 E-value=8.4e+02 Score=28.50 Aligned_cols=432 Identities=12% Similarity=0.005 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCChHHHHHHHH------hcccHHHHHHHHH
Q 002549 413 NKAMMLYQEMVSNGFTPDQALYEIMIGVLGRENKGEEIRKVVRDMKELSGINMQEISSILV------KGECYDHAAEILR 486 (909)
Q Consensus 413 ~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~a~~~~~ 486 (909)
.+-..+.+++.-. .-+...+..||..+.+.|+.++....-..|.+..+.+|......+. ..+...++...|+
T Consensus 97 ~ei~t~~ee~ai~--~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~e 174 (881)
T KOG0128|consen 97 QEIRTLEEELAIN--SYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEELFE 174 (881)
T ss_pred hHHHHHHHHhccc--ccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHHHH
Q ss_pred HHHHcCCCCCHHH-----HHHHHHHHhccCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhcc
Q 002549 487 SAIRNGIELDHEK-----LLSILSSYNVSGRHLEACELIEFVKQHASESTPPLTQAFIIMLCKAQKLDAALEEYSNAWGF 561 (909)
Q Consensus 487 ~~~~~~~~~d~~~-----~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 561 (909)
+++..-..+.... +...+..+...++++....+|+++++.-...
T Consensus 175 kal~dy~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~------------------------------- 223 (881)
T KOG0128|consen 175 KALGDYNSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSH------------------------------- 223 (881)
T ss_pred HHhcccccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhh-------------------------------
Q ss_pred CCcccchhhHHHHH---HHHHhcccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCC
Q 002549 562 GFFSKSKTMYESLI---HSCEYNERFAEASQVFSDMRFYNIEPSEDLYRSMVVAYCKMDFPETAHFIADQAEKKGIPFED 638 (909)
Q Consensus 562 ~~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 638 (909)
.......|...+ ..+..+-+-++...+|..-...+ .|..+-..-+.-..+...++....-++.++.
T Consensus 224 --~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~~--~D~~~~~~~~~~~sk~h~~~~~~~~~~~a~~------- 292 (881)
T KOG0128|consen 224 --ITEGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQP--LDEDTRGWDLSEQSKAHVYDVETKKLDDALK------- 292 (881)
T ss_pred --hcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcc--chhhhhHHHHHHHHhcchHHHHhccHHHHHH-------
Q ss_pred chHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHH
Q 002549 639 LSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQA 718 (909)
Q Consensus 639 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 718 (909)
+..+-+..+++..+. .++--.-|..++.-+...|++-.-...++++....+. +...|.....-
T Consensus 293 ---------------~l~~~~~~~e~~~q~-~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E~~~-~~~~wi~y~~~ 355 (881)
T KOG0128|consen 293 ---------------NLAKILFKFERLVQK-EPIKDQEWMSYIDFEKKSGDPVRIQLIEERAVAEMVL-DRALWIGYGVY 355 (881)
T ss_pred ---------------HHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhccc-cHHHHhhhhhh
Q ss_pred H-HhcCchhhHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccC----
Q 002549 719 L-IVDGRLNELYVVIQELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYHGMKAAGYFPTMYLYRVMSGLFCKGK---- 793 (909)
Q Consensus 719 ~-~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---- 793 (909)
. ...+-.+.+...+.+......-.-...-..++..-............+.+....++. .++.......+++
T Consensus 356 ~d~eLkv~~~~~~~~~ra~R~cp~tgdL~~rallAleR~re~~~vI~~~l~~~ls~~~~----l~~~~~~~rr~~~~~~~ 431 (881)
T KOG0128|consen 356 LDTELKVPQRGVSVHPRAVRSCPWTGDLWKRALLALERNREEITVIVQNLEKDLSMTVE----LHNDYLAYRRRCTNIID 431 (881)
T ss_pred cccccccccccccccchhhcCCchHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHHHH----HHHHHHHHHHhhcccch
Q ss_pred ---------chHHHHHHHHHHHHCCCCCCHHhHHHHHHHhhcc-CCHHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 002549 794 ---------RVRDVEAMVSEMKEAGFKPDLSIWNSMLKLYTGI-EDFKKTIQVYQEIQEADLQPDEDSFNTLIIMYCRDC 863 (909)
Q Consensus 794 ---------~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 863 (909)
.++.|...|.........+-..+........... ++.+.|+.+++.++..|-.--..-|...+..-...|
T Consensus 432 s~~~s~lr~~F~~A~~eLt~~~~~~~Dt~~~~~q~wA~~E~sl~~nmd~~R~iWn~imty~~~~iag~Wle~~~lE~~~g 511 (881)
T KOG0128|consen 432 SQDYSSLRAAFNHAWEELTELYGDQLDTRTEVLQLWAQVEASLLKNMDKAREIWNFIMTYGGGSIAGKWLEAINLEREYG 511 (881)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhchhhhhHhhhccccCCcchHHHHHHHHHhHHHHhC
Q ss_pred ChhhHHHHHHHHHHcCCCC--ChhhHHHHHHHHhccCCHHHHHHhhcC
Q 002549 864 RPEEGLSLMHEMRKLGLEP--KLDTYKSLISAFGKQQQLEQAEELLKS 909 (909)
Q Consensus 864 ~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~ 909 (909)
+...|..+++.+.-.-..| -..++..+.+--...|.++....-.++
T Consensus 512 ~~~~~R~~~R~ay~~~~~~~~~~ev~~~~~r~Ere~gtl~~~~~~~~~ 559 (881)
T KOG0128|consen 512 DGPSARKVLRKAYSQVVDPEDALEVLEFFRRFEREYGTLESFDLCPEK 559 (881)
T ss_pred CchhHHHHHHHHHhcCcCchhHHHHHHHHHHHHhccccHHHHhhhHHh
No 470
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=32.88 E-value=2.9e+02 Score=23.51 Aligned_cols=45 Identities=18% Similarity=0.282 Sum_probs=33.1
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 002549 170 GVDLLNEVRRSGLRPDIITYNTIISACSRESNLEEAMKVYGDLEA 214 (909)
Q Consensus 170 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 214 (909)
..+.+..+....+.|+..+.-.-+++|.+-+|+..|.++|+-++.
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 344455555667778888888888888888888888888877764
No 471
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=32.87 E-value=5.5e+02 Score=26.17 Aligned_cols=109 Identities=14% Similarity=0.079 Sum_probs=50.6
Q ss_pred HHHHHHHHhhcCChhhHHHHHHHHHH----cCCCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCCC----hHhH
Q 002549 606 YRSMVVAYCKMDFPETAHFIADQAEK----KGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVD----RKVW 677 (909)
Q Consensus 606 ~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~ 677 (909)
.......||+.|+.+.|.+.+....+ .|..-+-......++-.|....-..+-++..+.+.+.|-..+ ..+|
T Consensus 107 ~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY 186 (393)
T KOG0687|consen 107 MLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVY 186 (393)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHH
Confidence 34444455555555555555443332 233322222333334444444433444444444444443333 2334
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHH
Q 002549 678 NALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLL 716 (909)
Q Consensus 678 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 716 (909)
..+- |....++.+|..+|-..+.....-...+|.+++
T Consensus 187 ~Gly--~msvR~Fk~Aa~Lfld~vsTFtS~El~~Y~~~v 223 (393)
T KOG0687|consen 187 QGLY--CMSVRNFKEAADLFLDSVSTFTSYELMSYETFV 223 (393)
T ss_pred HHHH--HHHHHhHHHHHHHHHHHcccccceecccHHHHH
Confidence 3332 233467888888887776554333344454444
No 472
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=32.07 E-value=5.3e+02 Score=31.79 Aligned_cols=91 Identities=12% Similarity=-0.057 Sum_probs=49.6
Q ss_pred HHHhhhcCChHHHHH------HHHHHHhcCCCCChHhHHHHHHHHHHcCCHHHHHHHHHHHHH-------cCCCCCcccH
Q 002549 646 IDAYGRLKLWQKAES------LVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMR-------DGPSPTVDSI 712 (909)
Q Consensus 646 ~~~~~~~~~~~~A~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~~~~~~~ 712 (909)
+......|.+.+|.+ ++...-..-.+.....|..|...+-+.|+.++|+..-.++.- .+...+...|
T Consensus 939 gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y 1018 (1236)
T KOG1839|consen 939 GQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAY 1018 (1236)
T ss_pred hhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHh
Confidence 334445556666655 555433222445566777777778888888888776555421 1111133445
Q ss_pred HHHHHHHHhcCchhhHHHHHHHHH
Q 002549 713 NGLLQALIVDGRLNELYVVIQELQ 736 (909)
Q Consensus 713 ~~l~~~~~~~g~~~~A~~~~~~~~ 736 (909)
..+.......++...|+..+.+..
T Consensus 1019 ~nlal~~f~~~~~~~al~~~~ra~ 1042 (1236)
T KOG1839|consen 1019 GNLALYEFAVKNLSGALKSLNRAL 1042 (1236)
T ss_pred hHHHHHHHhccCccchhhhHHHHH
Confidence 555544445555556655555544
No 473
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=32.06 E-value=1.4e+02 Score=21.67 Aligned_cols=51 Identities=22% Similarity=0.188 Sum_probs=30.2
Q ss_pred HHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHH-----HhccCCHHHHHHhh
Q 002549 857 IMYCRDCRPEEGLSLMHEMRKLGLEPKLDTYKSLISA-----FGKQQQLEQAEELL 907 (909)
Q Consensus 857 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~-----~~~~g~~~~A~~~~ 907 (909)
..+...|++-+|=++++.+......|....+..+|.. ..+.|+.+.|.+++
T Consensus 7 ~~l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l~ 62 (62)
T PF03745_consen 7 IELFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRLL 62 (62)
T ss_dssp HHHHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHHH
T ss_pred HHHHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHhC
Confidence 3455678888888888887753223344455544433 35677777777654
No 474
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=31.95 E-value=4.2e+02 Score=26.88 Aligned_cols=53 Identities=13% Similarity=0.188 Sum_probs=31.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHH
Q 002549 191 TIISACSRESNLEEAMKVYGDLEAHNCQPDLWTYNAMISVYGRCGLFEKAEQLFKELES 249 (909)
Q Consensus 191 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 249 (909)
.++....+.++.......+..+. ....-...+..+...|++..|+++..+..+
T Consensus 103 ~Il~~~rkr~~l~~ll~~L~~i~------~v~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 103 EILRLQRKRQNLKKLLEKLEQIK------TVQQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 34445555555555555555554 244445566666777777777777766654
No 475
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=31.38 E-value=91 Score=31.10 Aligned_cols=41 Identities=27% Similarity=0.237 Sum_probs=27.4
Q ss_pred CCHH-HHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCCHHHH
Q 002549 219 PDLW-TYNAMISVYGRCGLFEKAEQLFKELESKGFFPDAVTY 259 (909)
Q Consensus 219 ~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 259 (909)
||.. -|+.-|....+.||+++|+.++++.++.|+.--..+|
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 4443 3567777777888888888888888777765433343
No 476
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=30.81 E-value=3.8e+02 Score=23.67 Aligned_cols=97 Identities=15% Similarity=0.138 Sum_probs=0.0
Q ss_pred HHHHHHHHCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----CCCHHHHHHHHHHHHHcCC-HhHHHHH
Q 002549 172 DLLNEVRRSGLRPDIIT--YNTIISACSRESNLEEAMKVYGDLEAHNC-----QPDLWTYNAMISVYGRCGL-FEKAEQL 243 (909)
Q Consensus 172 ~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~g~-~~~A~~~ 243 (909)
+...-|.+.+..++..+ .|.++.-...-+++.....+++.+..... ..+..+|.+++.+..+... ---+..+
T Consensus 23 ~~~~y~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~L 102 (145)
T PF13762_consen 23 SHLPYMQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTL 102 (145)
T ss_pred HHHHHhhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHH
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHH
Q 002549 244 FKELESKGFFPDAVTYNSLLYAFAR 268 (909)
Q Consensus 244 ~~~m~~~~~~~~~~~~~~ll~~~~~ 268 (909)
|.-|++.+.+++..-|..++.++.+
T Consensus 103 f~~Lk~~~~~~t~~dy~~li~~~l~ 127 (145)
T PF13762_consen 103 FNFLKKNDIEFTPSDYSCLIKAALR 127 (145)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHc
No 477
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=30.80 E-value=4.6e+02 Score=26.59 Aligned_cols=53 Identities=15% Similarity=0.186 Sum_probs=29.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 002549 296 TIIHMYGKQGQHDVALQLYRDMKLSGRNPDVVTYTVLIDSLGKANKISEAANVMSEMLD 354 (909)
Q Consensus 296 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 354 (909)
.++..+.+.++.....+.+..+. ....-...+..+...|++..|++++.+..+
T Consensus 103 ~Il~~~rkr~~l~~ll~~L~~i~------~v~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 103 EILRLQRKRQNLKKLLEKLEQIK------TVQQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 34444555555555555555543 222334455666677777777777776654
No 478
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=30.71 E-value=1.6e+02 Score=29.20 Aligned_cols=76 Identities=11% Similarity=0.128 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccCchHHHHHHHHHHHHCCCCCCH-HhHHHHHHHhhccCCHHHHHHHH
Q 002549 759 NIFEVKKIYHGMKAAGYFPTMYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDL-SIWNSMLKLYTGIEDFKKTIQVY 837 (909)
Q Consensus 759 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~ 837 (909)
+..+|+-.++...+ ..+.|+.++|..+|+-++. +.|+. ....-++...-..++.-+|-++|
T Consensus 112 ~~kEA~~Al~~A~~----------------~~~~Gk~ekA~~lfeHAla--laP~~p~~L~e~G~f~E~~~~iv~ADq~Y 173 (472)
T KOG3824|consen 112 KVKEAILALKAAGR----------------SRKDGKLEKAMTLFEHALA--LAPTNPQILIEMGQFREMHNEIVEADQCY 173 (472)
T ss_pred hhHHHHHHHHHHHH----------------HHhccchHHHHHHHHHHHh--cCCCCHHHHHHHhHHHHhhhhhHhhhhhh
Q ss_pred HHHHHcCCCC-ChhhHHH
Q 002549 838 QEIQEADLQP-DEDSFNT 854 (909)
Q Consensus 838 ~~~~~~~~~p-~~~~~~~ 854 (909)
-+++. +.| ++.++.+
T Consensus 174 ~~ALt--isP~nseALvn 189 (472)
T KOG3824|consen 174 VKALT--ISPGNSEALVN 189 (472)
T ss_pred heeee--eCCCchHHHhh
No 479
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=30.63 E-value=1.3e+02 Score=23.21 Aligned_cols=61 Identities=13% Similarity=0.079 Sum_probs=36.0
Q ss_pred chHHHHHHHHHHHHCCCCCCHHhHHHHHHHhhccCCHHHHHHHHHHHHHc---CCCCChhhHHHHHHHHHhcCChhhHHH
Q 002549 794 RVRDVEAMVSEMKEAGFKPDLSIWNSMLKLYTGIEDFKKTIQVYQEIQEA---DLQPDEDSFNTLIIMYCRDCRPEEGLS 870 (909)
Q Consensus 794 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~A~~ 870 (909)
.++.|.+.+++++.. | ..|+.++|+.+|++.++. |+.-... ..+..-.|++|..
T Consensus 4 ~~~~A~~~I~kaL~~----d------------E~g~~e~Al~~Y~~gi~~l~eg~ai~~~-------~~~~~~~w~~ar~ 60 (79)
T cd02679 4 YYKQAFEEISKALRA----D------------EWGDKEQALAHYRKGLRELEEGIAVPVP-------SAGVGSQWERARR 60 (79)
T ss_pred HHHHHHHHHHHHhhh----h------------hcCCHHHHHHHHHHHHHHHHHHcCCCCC-------cccccHHHHHHHH
Confidence 355666666666531 1 237788888888876652 3222111 2344456888888
Q ss_pred HHHHHHH
Q 002549 871 LMHEMRK 877 (909)
Q Consensus 871 ~~~~~~~ 877 (909)
+-++|..
T Consensus 61 ~~~Km~~ 67 (79)
T cd02679 61 LQQKMKT 67 (79)
T ss_pred HHHHHHH
Confidence 8888864
No 480
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=30.58 E-value=5.8e+02 Score=25.81 Aligned_cols=109 Identities=12% Similarity=0.086 Sum_probs=60.5
Q ss_pred CCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCchhhHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCCHHHHHHHH
Q 002549 688 GCYERARAVFNTMMRDGPSPTVDSINGLLQALIVDGRLNELYVVIQELQDMDFKISKSSILLMLDAFARSGNIFEVKKIY 767 (909)
Q Consensus 688 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 767 (909)
--+.+|.++|+++++.+-. +|+. -+.+..+|...+| +...+...-...-..+.-+-.+.|++.+|.+.+
T Consensus 230 ~Ti~~AE~l~k~ALka~e~----~yr~-sqq~qh~~~~~da------~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~ 298 (556)
T KOG3807|consen 230 TTIVDAERLFKQALKAGET----IYRQ-SQQCQHQSPQHEA------QLRRDTNVLVYIKRRLAMCARKLGRLREAVKIM 298 (556)
T ss_pred hhHHHHHHHHHHHHHHHHH----HHhh-HHHHhhhccchhh------hhhcccchhhHHHHHHHHHHHHhhhHHHHHHHH
Confidence 4577888999998875422 2331 1222222222222 122221111222233555556789999999999
Q ss_pred HHHHhcC-CCchHHHHHHHHHHHhccCchHHHHHHHHHHHH
Q 002549 768 HGMKAAG-YFPTMYLYRVMSGLFCKGKRVRDVEAMVSEMKE 807 (909)
Q Consensus 768 ~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 807 (909)
+.+.+.- +..-..+-..|+.++....-+.+...++.+.-+
T Consensus 299 RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDd 339 (556)
T KOG3807|consen 299 RDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDD 339 (556)
T ss_pred HHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 9988642 111223445677777777777777777666654
No 481
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=30.39 E-value=1.1e+02 Score=29.08 Aligned_cols=58 Identities=16% Similarity=0.401 Sum_probs=45.5
Q ss_pred HHhccCchHHHHHHHHHHHHCCCCCC-HHhHHHHHHHhhccCCHHHHHHHHHHHHHcCCCCCh
Q 002549 788 LFCKGKRVRDVEAMVSEMKEAGFKPD-LSIWNSMLKLYTGIEDFKKTIQVYQEIQEADLQPDE 849 (909)
Q Consensus 788 ~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 849 (909)
...+.|+.+.|.+++.++++ ..|+ ...|.-+...--+.|+.+.|.+.|++.++ ++|+.
T Consensus 4 ~~~~~~D~~aaaely~qal~--lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~--ldp~D 62 (287)
T COG4976 4 MLAESGDAEAAAELYNQALE--LAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLE--LDPED 62 (287)
T ss_pred hhcccCChHHHHHHHHHHhh--cCchhhhhhhhcchhhhhcccHHHHHHHHHHHHc--CCccc
Confidence 34577888888888888886 4554 46788888777888899999999999988 88843
No 482
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.31 E-value=7.4e+02 Score=26.89 Aligned_cols=408 Identities=13% Similarity=0.055 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhccC--CHHHHHHHHHHHHhcCCCCChhhHHHHHHH---HHhcCCHHHHHHHHHHhhccCCcccch----
Q 002549 498 EKLLSILSSYNVSG--RHLEACELIEFVKQHASESTPPLTQAFIIM---LCKAQKLDAALEEYSNAWGFGFFSKSK---- 568 (909)
Q Consensus 498 ~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~g~~~~A~~~~~~~~~~~~~~~~~---- 568 (909)
..+..+...+...| +...+++.++.+....++........+-.+ +.-..+++-|...++++......-|+.
T Consensus 8 ~aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvK 87 (629)
T KOG2300|consen 8 EALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVK 87 (629)
T ss_pred HHHHHHHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhh
Q ss_pred -hhHHHHHHHHHhcc-cHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCC--chHHHH
Q 002549 569 -TMYESLIHSCEYNE-RFAEASQVFSDMRFYNIEPSEDLYRSMVVAYCKMDFPETAHFIADQAEKKGIPFED--LSIYVD 644 (909)
Q Consensus 569 -~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~ 644 (909)
.+++.|...+.+.. .+..|..++++.++.. .-.+.--..++..+++.-..++-...--+++..|...-+ ...|..
T Consensus 88 f~a~SlLa~lh~~~~~s~~~~KalLrkaiels-q~~p~wsckllfQLaql~~idkD~~sA~elLavga~sAd~~~~~ylr 166 (629)
T KOG2300|consen 88 FQAASLLAHLHHQLAQSFPPAKALLRKAIELS-QSVPYWSCKLLFQLAQLHIIDKDFPSALELLAVGAESADHICFPYLR 166 (629)
T ss_pred hHHHHHHHHHHHHhcCCCchHHHHHHHHHHHh-cCCchhhHHHHHHHHHHHhhhccchhHHHHHhccccccchhhhHHHH
Q ss_pred HHHHhhhc---------CChHHHHHHHHHHHhcCCCCC--------hHhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 002549 645 IIDAYGRL---------KLWQKAESLVGCLRQRCAPVD--------RKVWNALIKAYAASGCYERARAVFNTMMRDGPSP 707 (909)
Q Consensus 645 l~~~~~~~---------~~~~~A~~~~~~~~~~~~~~~--------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 707 (909)
+...+... .+...+......+.+. ..+| ++..+.-+.-|.-.|+...+...++++.+.-...
T Consensus 167 ~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n-~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqti 245 (629)
T KOG2300|consen 167 MLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQN-ISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTI 245 (629)
T ss_pred HHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhc-cCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhcc
Q ss_pred Ccc----------------------------cHHHHHHHHHhcCchhhHHHHHHHHHhCCCC-------------ccHHH
Q 002549 708 TVD----------------------------SINGLLQALIVDGRLNELYVVIQELQDMDFK-------------ISKSS 746 (909)
Q Consensus 708 ~~~----------------------------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-------------~~~~~ 746 (909)
+.. .|..-...-...|-+++|.++-++++...-+ ....+
T Consensus 246 st~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~ 325 (629)
T KOG2300|consen 246 STSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMIL 325 (629)
T ss_pred CCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHH
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh-cCCCch-------HHHHHHHHHHHh-ccCchHHHHHHHHHHHHCCCCCCH--H
Q 002549 747 ILLMLDAFARSGNIFEVKKIYHGMKA-AGYFPT-------MYLYRVMSGLFC-KGKRVRDVEAMVSEMKEAGFKPDL--S 815 (909)
Q Consensus 747 ~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~p~-------~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~p~~--~ 815 (909)
...++-+-.-.|++.+|++-...|.+ ..-.|. ......++..|+ .-+.++.|+..|..+.+.--.-|. .
T Consensus 326 LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~ 405 (629)
T KOG2300|consen 326 LEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAF 405 (629)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHH
Q ss_pred hHHHHHHHhhccCCHHHHHHHHHHHHHcCCCC------ChhhHHHHHHHHHhcCChhhHHHHHHHHHH-----cCCCCCh
Q 002549 816 IWNSMLKLYTGIEDFKKTIQVYQEIQEADLQP------DEDSFNTLIIMYCRDCRPEEGLSLMHEMRK-----LGLEPKL 884 (909)
Q Consensus 816 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~ 884 (909)
....+...|.+.|+.+.--++.+.+--.+-.| ....+...+-....+++++||...+.+-.+ ...+...
T Consensus 406 ~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a 485 (629)
T KOG2300|consen 406 CNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTA 485 (629)
T ss_pred HHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHH
Q ss_pred hhHHHHHHHHhccCCHHHHHHhh
Q 002549 885 DTYKSLISAFGKQQQLEQAEELL 907 (909)
Q Consensus 885 ~~~~~l~~~~~~~g~~~~A~~~~ 907 (909)
-..--|.....--|+..++.+..
T Consensus 486 ~~LvLLs~v~lslgn~~es~nmv 508 (629)
T KOG2300|consen 486 CSLVLLSHVFLSLGNTVESRNMV 508 (629)
T ss_pred HHHHHHHHHHHHhcchHHHHhcc
No 483
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=29.89 E-value=6.2e+02 Score=25.91 Aligned_cols=122 Identities=9% Similarity=0.086 Sum_probs=85.3
Q ss_pred CchhhHHHHHHHHHhCCCCccHHHHHHHHHHHHh------cCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccCchH
Q 002549 723 GRLNELYVVIQELQDMDFKISKSSILLMLDAFAR------SGNIFEVKKIYHGMKAAGYFPTMYLYRVMSGLFCKGKRVR 796 (909)
Q Consensus 723 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~------~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 796 (909)
+-++++..++++....+. |.+..+...|.++-. .-+|.....+|+-+... .|++++--+-.-+..+..-.+
T Consensus 270 ~lI~eg~all~rA~~~~~-pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~--apSPvV~LNRAVAla~~~Gp~ 346 (415)
T COG4941 270 ALIDEGLALLDRALASRR-PGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQA--APSPVVTLNRAVALAMREGPA 346 (415)
T ss_pred HHHHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHh--CCCCeEeehHHHHHHHhhhHH
Confidence 457889999999888874 888887777666532 24788888888888874 466544333344455555567
Q ss_pred HHHHHHHHHHHCCCCCCHHhHHHH-HHHhhccCCHHHHHHHHHHHHHcCCCCCh
Q 002549 797 DVEAMVSEMKEAGFKPDLSIWNSM-LKLYTGIEDFKKTIQVYQEIQEADLQPDE 849 (909)
Q Consensus 797 ~A~~~~~~~~~~~~~p~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 849 (909)
.++.+++-+...+--.+...|.+. ...+.+.|+.++|...|++++. +.++.
T Consensus 347 agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~--La~~~ 398 (415)
T COG4941 347 AGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIA--LARNA 398 (415)
T ss_pred hHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHH--hcCCh
Confidence 788888888764322344444444 5567788999999999999999 66665
No 484
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=29.88 E-value=3.1e+02 Score=23.34 Aligned_cols=46 Identities=24% Similarity=0.236 Sum_probs=27.3
Q ss_pred hHHHHHHHHHhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 002549 727 ELYVVIQELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYHGMKA 772 (909)
Q Consensus 727 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 772 (909)
|..+-++.+...++-|++.++...+.+|.+.+|+--|..+|+-++.
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3444455555556666666666666666666666666666665553
No 485
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=29.83 E-value=89 Score=22.91 Aligned_cols=50 Identities=12% Similarity=0.109 Sum_probs=29.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 002549 184 PDIITYNTIISACSRESNLEEAMKVYGDLEAHNCQPDLWTYNAMISVYGRC 234 (909)
Q Consensus 184 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 234 (909)
|....++-++..+++..-.++++-.+.+..+.| .-+..+|---++.+++.
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g-~I~~d~~lK~vR~LaRe 55 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRG-SIDLDTFLKQVRSLARE 55 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SS-HHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHH
Confidence 444556666666666666667777777776666 34556666555555543
No 486
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=29.15 E-value=2.2e+02 Score=30.87 Aligned_cols=84 Identities=15% Similarity=0.052 Sum_probs=55.5
Q ss_pred chHHHHHHHHHHHHCCCCCCH-HhHHHHHHHhhcc---CCHHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCChhhH
Q 002549 794 RVRDVEAMVSEMKEAGFKPDL-SIWNSMLKLYTGI---EDFKKTIQVYQEIQEADLQPDE-DSFNTLIIMYCRDCRPEEG 868 (909)
Q Consensus 794 ~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A 868 (909)
....|+..+..... ..|+. ..+-.-+.++.+. |+.-.|+.-...+++ ++|.. .++..|.+++...+++.+|
T Consensus 389 ~~~~~i~~~s~a~q--~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alr--ln~s~~kah~~la~aL~el~r~~ea 464 (758)
T KOG1310|consen 389 IVSGAISHYSRAIQ--YVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALR--LNPSIQKAHFRLARALNELTRYLEA 464 (758)
T ss_pred HHHHHHHHHHHHhh--hccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhcc--CChHHHHHHHHHHHHHHHHhhHHHh
Confidence 34556666666665 23444 5555566666655 455556666666666 67754 7778888899999999999
Q ss_pred HHHHHHHHHcCCCCC
Q 002549 869 LSLMHEMRKLGLEPK 883 (909)
Q Consensus 869 ~~~~~~~~~~~~~p~ 883 (909)
++....+. ...|.
T Consensus 465 l~~~~alq--~~~Pt 477 (758)
T KOG1310|consen 465 LSCHWALQ--MSFPT 477 (758)
T ss_pred hhhHHHHh--hcCch
Confidence 88877776 44563
No 487
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=28.78 E-value=5.6e+02 Score=28.20 Aligned_cols=24 Identities=25% Similarity=0.329 Sum_probs=14.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Q 002549 679 ALIKAYAASGCYERARAVFNTMMR 702 (909)
Q Consensus 679 ~l~~~~~~~g~~~~A~~~~~~~~~ 702 (909)
.++.++...++.+.|..+++++.+
T Consensus 213 ~v~k~vv~LnDa~~a~~L~~kL~~ 236 (926)
T COG5116 213 YVIKAVVYLNDAEKAKALIEKLVK 236 (926)
T ss_pred EEeEEEEEeccHHHHHHHHHHHHh
Confidence 344555555666666666666654
No 488
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=28.63 E-value=4e+02 Score=24.55 Aligned_cols=22 Identities=9% Similarity=0.179 Sum_probs=14.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh
Q 002549 298 IHMYGKQGQHDVALQLYRDMKL 319 (909)
Q Consensus 298 ~~~~~~~g~~~~A~~~~~~~~~ 319 (909)
+..|.+.|.+++|.++++....
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhc
Confidence 3456666666666666666654
No 489
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=28.50 E-value=3.8e+02 Score=22.95 Aligned_cols=44 Identities=16% Similarity=0.097 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHcCCCCCCchHHHHHHHHhhhcCChHHHHHHHHH
Q 002549 621 TAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGC 664 (909)
Q Consensus 621 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 664 (909)
.+..+|..+..+|+.-.....|..-+..+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 56666666666666555555555555555555555555555544
No 490
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=28.49 E-value=5.2e+02 Score=26.05 Aligned_cols=42 Identities=7% Similarity=0.101 Sum_probs=19.7
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 002549 277 EISENMLKMGFGKDEMTYNTIIHMYGKQGQHDVALQLYRDMK 318 (909)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 318 (909)
++++.+.+.++.|.-.++.-+.-.+...-.+...+.+|+.+.
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~ 305 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLL 305 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHh
Confidence 344444444444444444444444444444445555555444
No 491
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=28.30 E-value=3.8e+02 Score=29.51 Aligned_cols=28 Identities=7% Similarity=0.254 Sum_probs=18.9
Q ss_pred HhHHHHHHHhhccCCHHHHHHHHHHHHH
Q 002549 815 SIWNSMLKLYTGIEDFKKTIQVYQEIQE 842 (909)
Q Consensus 815 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 842 (909)
.-|..++..|++++++.+|+..|-++-+
T Consensus 319 YPYty~gg~~yR~~~~~eA~~~Wa~aa~ 346 (618)
T PF05053_consen 319 YPYTYLGGYYYRHKRYREALRSWAEAAD 346 (618)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred ccceehhhHHHHHHHHHHHHHHHHHHHH
Confidence 4467777777777888888777766644
No 492
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=28.16 E-value=1.3e+02 Score=28.71 Aligned_cols=52 Identities=12% Similarity=-0.028 Sum_probs=27.0
Q ss_pred hcCChhhHHHHHHHHHHcCCCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhc
Q 002549 615 KMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQR 668 (909)
Q Consensus 615 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 668 (909)
+.++.+.+.+++.+++. +.|+....|..++....+.|+.+.|...+++.++.
T Consensus 7 ~~~D~~aaaely~qal~--lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~l 58 (287)
T COG4976 7 ESGDAEAAAELYNQALE--LAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLEL 58 (287)
T ss_pred ccCChHHHHHHHHHHhh--cCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcC
Confidence 44555555555555554 44555555555555555555555555555555444
No 493
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.58 E-value=1.3e+02 Score=24.09 Aligned_cols=45 Identities=9% Similarity=-0.061 Sum_probs=33.0
Q ss_pred hhhHHHHHHHHHHcCCCCChhhHHHHHHHHhccCCHHHHHHhhcC
Q 002549 865 PEEGLSLMHEMRKLGLEPKLDTYKSLISAFGKQQQLEQAEELLKS 909 (909)
Q Consensus 865 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 909 (909)
.++-.+.+++....+....+..+.+|+..|.+.|+.+.|.+-|++
T Consensus 53 ~~~le~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFet 97 (121)
T COG4259 53 TAALEKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFET 97 (121)
T ss_pred HHHHHHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHH
Confidence 344456677766655554566777899999999999999988763
No 494
>PRK14700 recombination factor protein RarA; Provisional
Probab=27.30 E-value=6.6e+02 Score=25.41 Aligned_cols=36 Identities=8% Similarity=-0.068 Sum_probs=16.4
Q ss_pred CchhhHHHHHHHHHhCCCCccHHHHHHHHHHHHhcC
Q 002549 723 GRLNELYVVIQELQDMDFKISKSSILLMLDAFARSG 758 (909)
Q Consensus 723 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 758 (909)
.+.+.|+-++-+|.+.|-.|....-..++-+...-|
T Consensus 140 SDpDAAlYyLArml~~GEDp~~IaRRLii~AsEDIG 175 (300)
T PRK14700 140 TDPDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIG 175 (300)
T ss_pred CCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 344445555555555554444444444444444333
No 495
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=26.97 E-value=1.3e+02 Score=30.05 Aligned_cols=42 Identities=24% Similarity=0.341 Sum_probs=33.4
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChHHHH
Q 002549 112 DTVQVYNAMMGIYARNGRFQKVQELLDLMRKRGCEPDLVSFN 153 (909)
Q Consensus 112 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~ 153 (909)
.+..-||.-|..-.+.|++++|+.++++..+.|+..-..+|.
T Consensus 255 dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFi 296 (303)
T PRK10564 255 DTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFI 296 (303)
T ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 344567899999999999999999999999998654444443
No 496
>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=26.26 E-value=2.3e+02 Score=34.08 Aligned_cols=97 Identities=14% Similarity=0.244 Sum_probs=51.4
Q ss_pred cHHHHHHHHHHHhhCCCc-chHHHHHhhhcC-----CCCChhhHHHHHHHhc---cCChHHHHHHHHHHHhCCCCCC-CH
Q 002549 11 DWRERVKFLTDKILGLRE-NQFVADVLDERS-----VQMTPTDYCFVVKWVG---QVSWQRALEVYEWLNLRHWFSP-NA 80 (909)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~-----~~~~~~~~~~~~~~~~---~~~~~~a~~~f~~~~~~~~~~~-~~ 80 (909)
.|.+.++++......-.. .+.+...|.-|. .+..+.+..++..+++ ...+..++.+|.+|.... +.. ..
T Consensus 36 ~w~ryi~wv~~~~~~~~~~~~~l~~~lerc~~~~~~lk~Y~nD~Rfl~~~~~~~~~e~~~d~~d~f~~m~~kg-Ig~~la 114 (974)
T KOG1166|consen 36 KWLRYIEWVLEVYPEGKENQSLLRNLLERCLEELEDLKRYRNDPRFLILWCSLELREELQDAEDFFSYLENKG-IGTTLA 114 (974)
T ss_pred hhHhHhhhhhhccccCCchhhhHHHHHHHHHHhccchhhccccHHHHHHHHhHHHHHHHhhHHHHHHHHHhcc-ccchhH
Confidence 488888887777766555 333333333222 2222333333333332 235677777777774333 333 33
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 002549 81 RMLATILAVLGKANQENLAVETFMRAES 108 (909)
Q Consensus 81 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 108 (909)
..|-..-..|.+.+.+..|..+|....+
T Consensus 115 lfYe~~a~~lE~k~~~keA~~v~q~Giq 142 (974)
T KOG1166|consen 115 LFYEAYAKHLERKEYFKEAKEVFQLGIQ 142 (974)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555556666667777777765543
No 497
>PRK12798 chemotaxis protein; Reviewed
Probab=26.04 E-value=8.2e+02 Score=26.06 Aligned_cols=193 Identities=10% Similarity=0.025 Sum_probs=103.0
Q ss_pred cCCHHHHHHHHHHhhccCCcccchhhHHHHHHHHHh-cccHHHHHHHHHHHHhCCCCC----CHHHHHHHHHHHhhcCCh
Q 002549 545 AQKLDAALEEYSNAWGFGFFSKSKTMYESLIHSCEY-NERFAEASQVFSDMRFYNIEP----SEDLYRSMVVAYCKMDFP 619 (909)
Q Consensus 545 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~~~~p----~~~~~~~l~~~~~~~~~~ 619 (909)
.|+.+++.+.+..+.... .|+....+..|+.+-.. ..++..|+.+|+..+-. -| ....+..-+....+.|+.
T Consensus 125 ~Gr~~~a~~~La~i~~~~-l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~ 201 (421)
T PRK12798 125 SGRGREARKLLAGVAPEY-LPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDA 201 (421)
T ss_pred cCCHHHHHHHhhcCChhh-cCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcH
Confidence 566666666666654433 35555566666655443 45677788887776532 23 233345555566777777
Q ss_pred hhHHHHHHHHHHc-CCCCCCchHHHHHHHHhhhcCChHHHHHHHHHHHhcCCCC--ChHhHHHHHHHHHHcCCHHHHHHH
Q 002549 620 ETAHFIADQAEKK-GIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPV--DRKVWNALIKAYAASGCYERARAV 696 (909)
Q Consensus 620 ~~a~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~ 696 (909)
++...+-.+.... ...|-.......+...+.+..+-..- +.+..++.. .++ -..+|-.+.+.-.-.|+.+.|.-.
T Consensus 202 ~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~-~~l~~~ls~-~d~~~q~~lYL~iAR~Ali~Gk~~lA~~A 279 (421)
T PRK12798 202 DKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRD-ARLVEILSF-MDPERQRELYLRIARAALIDGKTELARFA 279 (421)
T ss_pred HHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccH-HHHHHHHHh-cCchhHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 7766655544432 12222222223333333333221111 223333333 222 245777777777788999999888
Q ss_pred HHHHHHcCCCCCcccHHHHHHHHH-----hcCchhhHHHHHHHHHhCCCCccH
Q 002549 697 FNTMMRDGPSPTVDSINGLLQALI-----VDGRLNELYVVIQELQDMDFKISK 744 (909)
Q Consensus 697 ~~~~~~~~~~~~~~~~~~l~~~~~-----~~g~~~~A~~~~~~~~~~~~~~~~ 744 (909)
-+++...... + ..-...+..|. -..+.+++++.+.++-.....+..
T Consensus 280 s~~A~~L~~~-~-~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~~~L~~~D 330 (421)
T PRK12798 280 SERALKLADP-D-SADAARARLYRGAALVASDDAESALEELSQIDRDKLSERD 330 (421)
T ss_pred HHHHHHhccC-C-CcchHHHHHHHHHHccCcccHHHHHHHHhcCChhhCChhh
Confidence 8888876422 2 12222222332 234567777777766555554443
No 498
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=25.73 E-value=4.4e+02 Score=25.88 Aligned_cols=21 Identities=19% Similarity=0.289 Sum_probs=11.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHH
Q 002549 750 MLDAFARSGNIFEVKKIYHGM 770 (909)
Q Consensus 750 l~~~~~~~g~~~~a~~~~~~~ 770 (909)
+..-|.+.|++++|.++|+.+
T Consensus 184 ~A~ey~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 184 MAEEYFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 444455555555555555554
No 499
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=25.66 E-value=3.5e+02 Score=23.86 Aligned_cols=32 Identities=19% Similarity=0.148 Sum_probs=14.7
Q ss_pred HHHHHHhcCchhhHHHHHHHHHhCCCCccHHH
Q 002549 715 LLQALIVDGRLNELYVVIQELQDMDFKISKSS 746 (909)
Q Consensus 715 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 746 (909)
++..+.+.++.-.|.++++.+.+.+...+..|
T Consensus 26 vl~~L~~~~~~~sAeei~~~l~~~~p~islaT 57 (145)
T COG0735 26 VLELLLEADGHLSAEELYEELREEGPGISLAT 57 (145)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhH
Confidence 33444444444455555555555444444333
No 500
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=24.73 E-value=2.2e+03 Score=30.59 Aligned_cols=102 Identities=12% Similarity=0.103 Sum_probs=53.3
Q ss_pred HHHHhccCchHHHHHHHHHHHHCCCCCCHHhHHH---H---HHHhhc-cCCHHHHHHHHHHHHHcCCCCC--hhhHHHHH
Q 002549 786 SGLFCKGKRVRDVEAMVSEMKEAGFKPDLSIWNS---M---LKLYTG-IEDFKKTIQVYQEIQEADLQPD--EDSFNTLI 856 (909)
Q Consensus 786 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~---l---~~~~~~-~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~ 856 (909)
+....++|-++-++..+.++-. -|+...-.+ + +.+|.. .+....++++.+.---..+.-+ ..-+..-+
T Consensus 2743 akvArkh~l~~vcl~~L~~iyt---lp~veiqdaF~K~req~~c~l~~~~e~~~gLevi~sTNl~yF~~~q~aeff~lkG 2819 (3550)
T KOG0889|consen 2743 AKVARKHGLPDVCLNQLAKIYT---LPNVEIQDAFQKLREQAKCYLQNKNELKTGLEVIESTNLMYFSDRQKAEFFTLKG 2819 (3550)
T ss_pred HHHHHhcCChHHHHHHHHHHhc---cCcchHHHHHHHHHHHHHHHhcChHHHHHHHHHHhcccHHHHhhHHHHHHHHhhh
Confidence 3334455666666666666654 233322111 1 112222 2344445554443211101111 23466677
Q ss_pred HHHHhcCChhhHHHHHHHHHH--cCCCCChhhHHHH
Q 002549 857 IMYCRDCRPEEGLSLMHEMRK--LGLEPKLDTYKSL 890 (909)
Q Consensus 857 ~~~~~~g~~~~A~~~~~~~~~--~~~~p~~~~~~~l 890 (909)
..+.+.|+.++|.+.|..+.+ .+.......|...
T Consensus 2820 ~f~~kL~~~eeAn~~fs~AvQi~~~l~KaW~~Wg~y 2855 (3550)
T KOG0889|consen 2820 MFLEKLGKFEEANKAFSAAVQIDDGLGKAWAEWGKY 2855 (3550)
T ss_pred HHHHHhcCcchhHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 888899999999999999987 4454444444443
Done!