Query 002549
Match_columns 909
No_of_seqs 557 out of 4270
Neff 11.5
Searched_HMMs 29240
Date Tue Mar 26 16:58:55 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002549.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1267-1271//hhsearch_pdb/002549hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 1.0 1 1 315.8 42.2 308 539-894 279-594 (597)
2 2xpi_A Anaphase-promoting comp 1.0 1 1 310.6 42.9 311 503-860 278-595 (597)
3 1w3b_A UDP-N-acetylglucosamine 1.0 1 1 232.3 45.8 380 505-899 7-388 (388)
4 1w3b_A UDP-N-acetylglucosamine 1.0 1 1 223.7 44.7 317 534-864 69-388 (388)
5 4g26_A Pentatricopeptide repea 1.0 1 1 220.5 25.2 49 116-164 28-76 (501)
6 4g26_A Pentatricopeptide repea 1.0 1 1 219.5 25.9 204 170-373 9-222 (501)
7 2gw1_A Mitochondrial precursor 1.0 1 1 205.3 37.5 203 640-849 271-482 (514)
8 2y4t_A DNAJ homolog subfamily 1.0 1 1 199.9 36.0 239 636-904 174-445 (450)
9 2gw1_A Mitochondrial precursor 1.0 1 1 197.4 41.7 231 639-878 237-478 (514)
10 3fp2_A TPR repeat-containing p 1.0 1 1 194.1 42.8 206 639-851 276-497 (537)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=315.83 Aligned_cols=308 Identities=13% Similarity=0.130 Sum_probs=187.2
Q ss_pred HHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 99998118899999999986205876664431999999998026677899999998858988889889999999850499
Q 002549 539 IIMLCKAQKLDAALEEYSNAWGFGFFSKSKTMYESLIHSCEYNERFAEASQVFSDMRFYNIEPSEDLYRSMVVAYCKMDF 618 (909)
Q Consensus 539 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 618 (909)
+..|.+.|++++|+++|+++... |++..+|..++..+...|++++|..+|+.+...
T Consensus 279 ~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------------------- 334 (597)
T 2xpi_A 279 LNKTSHEDELRRAEDYLSSINGL---EKSSDLLLCKADTLFVRSRFIDVLAITTKILEI--------------------- 334 (597)
T ss_dssp SCTTTTHHHHHHHHHHHHTSTTG---GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------------
T ss_pred HHHHCCCCHHHHHHHHHHHHHCC---CCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHC---------------------
T ss_conf 99980731399999999876438---830999999999999846899999999999972---------------------
Q ss_pred HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 65699999999884999998247999999962018867899999999844799875859999999997199899999999
Q 002549 619 PETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFN 698 (909)
Q Consensus 619 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 698 (909)
.|++...+..++..+...|++++|..+++++.+. .|.+..+++.++.+|...|++++|.++|+
T Consensus 335 ----------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 397 (597)
T 2xpi_A 335 ----------------DPYNLDVYPLHLASLHESGEKNKLYLISNDLVDR-HPEKAVTWLAVGIYYLCVNKISEARRYFS 397 (597)
T ss_dssp ----------------CTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ----------------CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_conf ----------------9553799999999999827777999999999851-83547999999999998356999999999
Q ss_pred HHHHCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCH
Q ss_conf 97974999982209999999994083305999999987399986289999999999920799889999999886598852
Q 002549 699 TMMRDGPSPTVDSINGLLQALIVDGRLNELYVVIQELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYHGMKAAGYFPT 778 (909)
Q Consensus 699 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~ 778 (909)
++.+..|. +..+|..++.+|.+.|++++|+++++++.+.+ +.+..++..++.+|.+.|++++|.++|+++.+.. +.+
T Consensus 398 ~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~ 474 (597)
T 2xpi_A 398 KSSTMDPQ-FGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYD 474 (597)
T ss_dssp HHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCC
T ss_pred HHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCC
T ss_conf 99872977-78999999999997577799999999999868-1343899999999998579999999999999848-887
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCC-CHHH
Q ss_conf 788999999986257337899999999987----98889--7749999999615488788999999999839997-8422
Q 002549 779 MYLYRVMSGLFCKGKRVRDVEAMVSEMKEA----GFKPD--LSIWNSMLKLYTGIEDFKKTIQVYQEIQEADLQP-DEDS 851 (909)
Q Consensus 779 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~ 851 (909)
..+|+.++..+.+.|++++|+++++++.+. +..|+ ..+|..++.+|...|++++|++.++++++ ..| +..+
T Consensus 475 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~ 552 (597)
T 2xpi_A 475 PLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLL--LSTNDANV 552 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSSCCHHH
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH--HCCCCHHH
T ss_conf 6799999999998189999999999999853234545354999999999999980479999999999997--38997389
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Q ss_conf 99999999934991659999999997399988-24399999988
Q 002549 852 FNTLIIMYCRDCRPEEGLSLMHEMRKLGLEPK-LDTYKSLISAF 894 (909)
Q Consensus 852 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~ 894 (909)
+..++.+|...|++++|.++++++.+. .|+ ...+..+..+|
T Consensus 553 ~~~l~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~ 594 (597)
T 2xpi_A 553 HTAIALVYLHKKIPGLAITHLHESLAI--SPNEIMASDLLKRAL 594 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHC--CCCCHHHHHHHHHHH
T ss_conf 999999999817899999999999720--888748999999987
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=310.59 Aligned_cols=311 Identities=10% Similarity=-0.015 Sum_probs=201.8
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 99998604987889999999984179999322899999998118899999999986205876664431999999998026
Q 002549 503 ILSSYNVSGRHLEACELIEFVKQHASESTPPLTQAFIIMLCKAQKLDAALEEYSNAWGFGFFSKSKTMYESLIHSCEYNE 582 (909)
Q Consensus 503 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 582 (909)
++..|...|++++|..+++.+.+. +.+...+..++..|.+.|++++|+..|+++...+ |.+..++..++.++...|
T Consensus 278 ~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g 353 (597)
T 2xpi_A 278 KLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID--PYNLDVYPLHLASLHESG 353 (597)
T ss_dssp TSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCCTTHHHHHHHHHHHT
T ss_pred HHHHHCCCCHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHHC
T ss_conf 999980731399999999876438--8309999999999998468999999999999729--553799999999999827
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 67789999999885898888988999999985049965699999999884999998247999999962018867899999
Q 002549 583 RFAEASQVFSDMRFYNIEPSEDLYRSMVVAYCKMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLV 662 (909)
Q Consensus 583 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 662 (909)
++++|..+++.+... .|++...+..++..|...|++++|.+.|
T Consensus 354 ~~~~A~~~~~~~~~~-------------------------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 396 (597)
T 2xpi_A 354 EKNKLYLISNDLVDR-------------------------------------HPEKAVTWLAVGIYYLCVNKISEARRYF 396 (597)
T ss_dssp CHHHHHHHHHHHHHH-------------------------------------CTTSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH-------------------------------------CCCCHHHHHHHHHHHHHHCCHHHHHHHH
T ss_conf 777999999999851-------------------------------------8354799999999999835699999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 99984479987585999999999719989999999997974999982209999999994083305999999987399986
Q 002549 663 GCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQALIVDGRLNELYVVIQELQDMDFKI 742 (909)
Q Consensus 663 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 742 (909)
+++.+. .|.+...|+.++.+|...|++++|.++|+++.+.++. +..++..++.+|.+.|++++|.++++++.+.. +.
T Consensus 397 ~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~ 473 (597)
T 2xpi_A 397 SKSSTM-DPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQG-THLPYLFLGMQHMQLGNILLANEYLQSSYALF-QY 473 (597)
T ss_dssp HHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTT-CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CC
T ss_pred HHHHHH-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CC
T ss_conf 999872-9777899999999999757779999999999986813-43899999999998579999999999999848-88
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC----CCCCH--HHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHH
Q ss_conf 2899999999999207998899999998865----98852--78899999998625733789999999998798889774
Q 002549 743 SKSSILLMLDAFARSGNIFEVKKIYHGMKAA----GYFPT--MYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDLSI 816 (909)
Q Consensus 743 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 816 (909)
+..++..++.++.+.|++++|.++++++.+. +..|+ ..+|..++..+.+.|++++|++.++++.+.+ +.+..+
T Consensus 474 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~ 552 (597)
T 2xpi_A 474 DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANV 552 (597)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHH
T ss_pred CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHC-CCCHHH
T ss_conf 7679999999999818999999999999985323454535499999999999998047999999999999738-997389
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHH
Q ss_conf 999999961548878899999999983999784-22999999999
Q 002549 817 WNSMLKLYTGIEDFKKTIQVYQEIQEADLQPDE-DSFNTLIIMYC 860 (909)
Q Consensus 817 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~ 860 (909)
|..++.+|...|++++|.+.++++++ +.|+. ..+..++.+|.
T Consensus 553 ~~~l~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 553 HTAIALVYLHKKIPGLAITHLHESLA--ISPNEIMASDLLKRALE 595 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHH--CCCCCHHHHHHHHHHHH
T ss_conf 99999999981789999999999972--08887489999999874
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=1.00 E-value=1 Score=232.31 Aligned_cols=380 Identities=12% Similarity=0.064 Sum_probs=288.2
Q ss_pred HHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCH
Q ss_conf 99860498788999999998417999932289999999811889999999998620587666443199999999802667
Q 002549 505 SSYNVSGRHLEACELIEFVKQHASESTPPLTQAFIIMLCKAQKLDAALEEYSNAWGFGFFSKSKTMYESLIHSCEYNERF 584 (909)
Q Consensus 505 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 584 (909)
..+...|++++|...+..+.+..|. +...+..+...+...|++++|...++...... |.+..+|..++.++...|++
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~--p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQEPD-NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN--PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHCCCH
T ss_conf 9998779999999999999984978-89999999999998689999999999997619--78669999999999877999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 78999999988589888898899999998504996569999999988499999824799999996201886789999999
Q 002549 585 AEASQVFSDMRFYNIEPSEDLYRSMVVAYCKMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGC 664 (909)
Q Consensus 585 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 664 (909)
++|+..|+.+.... +.+...+..+...+...|++++|...++.++. ..|+....+..++..+...|++++|...+++
T Consensus 84 ~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 84 QEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQ--YNPDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHH--HCTTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 99999999998749-65399999999999985899999999999997--5989689999999999984689999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCH
Q ss_conf 98447998758599999999971998999999999797499998220999999999408330599999998739998628
Q 002549 665 LRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQALIVDGRLNELYVVIQELQDMDFKISK 744 (909)
Q Consensus 665 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 744 (909)
+.+. .|.+...|..++.++...|++++|...|+++++.+|. +...+..++..+...|++++|...+++..... +.+.
T Consensus 161 al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~ 237 (388)
T 1w3b_A 161 AIET-QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHA 237 (388)
T ss_dssp HHHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCH
T ss_pred HHHH-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCH
T ss_conf 9872-9897899999999999859999999999999855988-67999999999998578999999999998529-6878
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 99999999999207998899999998865988527889999999862573378999999999879888977499999996
Q 002549 745 SSILLMLDAFARSGNIFEVKKIYHGMKAAGYFPTMYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPDLSIWNSMLKLY 824 (909)
Q Consensus 745 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 824 (909)
.++..++.++...|++++|...++++.+.. +.+...+..++..+.+.|++++|++.++++.+. .+.+..++..++.++
T Consensus 238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~ 315 (388)
T 1w3b_A 238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
T ss_conf 999999999998688999999999998649-998899999999999869979999999999864-944499999999999
Q ss_pred HCCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHCCCC
Q ss_conf 154887889999999998399978-42299999999934991659999999997399988-2439999998840599
Q 002549 825 TGIEDFKKTIQVYQEIQEADLQPD-EDSFNTLIIMYCRDCRPEEGLSLMHEMRKLGLEPK-LDTYKSLISAFGKQQQ 899 (909)
Q Consensus 825 ~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 899 (909)
...|++++|+..++++++ ..|+ ...+..++.+|.+.|++++|.+.++++.+ ..|+ ...+..++..+...|+
T Consensus 316 ~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~--~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 316 REQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HTTTCHHHHHHHHHHHTT--SCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTCC
T ss_pred HHCCCHHHHHHHHHHHHH--CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCC
T ss_conf 984899999999999986--0987399997799999986888999999999986--199978999859999987459
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=1.00 E-value=1 Score=223.70 Aligned_cols=317 Identities=10% Similarity=0.052 Sum_probs=189.7
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHH
Q ss_conf 289999999811889999999998620587666443199999999802667789999999885898888-9889999999
Q 002549 534 LTQAFIIMLCKAQKLDAALEEYSNAWGFGFFSKSKTMYESLIHSCEYNERFAEASQVFSDMRFYNIEPS-EDLYRSMVVA 612 (909)
Q Consensus 534 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~ 612 (909)
.+..++..+.+.|++++|+..|+++.... |.+...|..++.++...|++++|...|+.+... .|+ ...+..+...
T Consensus 69 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~ 144 (388)
T 1w3b_A 69 AYSNLGNVYKERGQLQEAIEHYRHALRLK--PDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNL 144 (388)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHH
T ss_conf 99999999987799999999999998749--653999999999999858999999999999975--98968999999999
Q ss_pred HHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHH
Q ss_conf 85049965699999999884999998247999999962018867899999999844799875859999999997199899
Q 002549 613 YCKMDFPETAHFIADQAEKKGIPFEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYER 692 (909)
Q Consensus 613 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 692 (909)
+...|++++|...+++++. ..|+....+..++..+...|++++|...++++++. .|.+...+..++.++...|++++
T Consensus 145 ~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~~~~~~ 221 (388)
T 1w3b_A 145 LKALGRLEEAKACYLKAIE--TQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL-DPNFLDAYINLGNVLKEARIFDR 221 (388)
T ss_dssp HHTTSCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTCTTH
T ss_pred HHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHCCCHHH
T ss_conf 9984689999999999987--29897899999999999859999999999999855-98867999999999998578999
Q ss_pred HHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 99999997974999982209999999994083305999999987399986289999999999920799889999999886
Q 002549 693 ARAVFNTMMRDGPSPTVDSINGLLQALIVDGRLNELYVVIQELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYHGMKA 772 (909)
Q Consensus 693 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 772 (909)
|...+.++++..|. +..++..++.++...|++++|...++++.+.+ +.+..++..++.++.+.|++++|...++++.+
T Consensus 222 A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 299 (388)
T 1w3b_A 222 AVAAYLRALSLSPN-HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALR 299 (388)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 99999999852968-78999999999998688999999999998649-99889999999999986997999999999986
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCH-H
Q ss_conf 59885278899999998625733789999999998798889-774999999961548878899999999983999784-2
Q 002549 773 AGYFPTMYLYRVMSGLFCKGKRVRDVEAMVSEMKEAGFKPD-LSIWNSMLKLYTGIEDFKKTIQVYQEIQEADLQPDE-D 850 (909)
Q Consensus 773 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~ 850 (909)
.. +.+...+..++..+...|++++|+..++++.+ ..|+ ..++..++.++...|++++|+..++++++ +.|+. .
T Consensus 300 ~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~--~~p~~~~ 374 (388)
T 1w3b_A 300 LC-PTHADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFAD 374 (388)
T ss_dssp HC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTT--SCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTCHH
T ss_pred HC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCHH
T ss_conf 49-44499999999999984899999999999986--0987399997799999986888999999999986--1999789
Q ss_pred HHHHHHHHHHHCCC
Q ss_conf 29999999993499
Q 002549 851 SFNTLIIMYCRDCR 864 (909)
Q Consensus 851 ~~~~l~~~~~~~g~ 864 (909)
.+..++.++...|+
T Consensus 375 a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 375 AYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHCCC
T ss_conf 99859999987459
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=1.00 E-value=1 Score=220.51 Aligned_cols=49 Identities=16% Similarity=0.291 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 9999999999839924899999999876999896789999999998399
Q 002549 116 VYNAMMGIYARNGRFQKVQELLDLMRKRGCEPDLVSFNTLINARLRSGA 164 (909)
Q Consensus 116 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 164 (909)
.++.+|.+|++.|++++|+++|++|.+.|+.||..+|+++|.+|++.+.
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~ 76 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEA 76 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCC
T ss_conf 9999999998598999999999999981899878399999999985783
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=1.00 E-value=1 Score=219.49 Aligned_cols=204 Identities=13% Similarity=0.249 Sum_probs=123.9
Q ss_pred HHHHHHHHHHCCCCCCH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCC---------HHH
Q ss_conf 99999999977999899-99999999998069998999999998869999899999999999998399---------749
Q 002549 170 GVDLLNEVRRSGLRPDI-ITYNTIISACSRESNLEEAMKVYGDLEAHNCQPDLWTYNAMISVYGRCGL---------FEK 239 (909)
Q Consensus 170 a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---------~~~ 239 (909)
+..+.+.+.+.+....+ ..++.++.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.+. .++
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~ 88 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR 88 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHCCHHHH
T ss_conf 99999999982666897999999999998598999999999999981899878399999999985783043332124999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 99999999978999889889999999997199989999999999879998989999999999943999999999999986
Q 002549 240 AEQLFKELESKGFFPDAVTYNSLLYAFAREGNVEKVKEISENMLKMGFGKDEMTYNTIIHMYGKQGQHDVALQLYRDMKL 319 (909)
Q Consensus 240 A~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 319 (909)
|.++|++|...|+.||..+|+.+|.+|++.|++++|.+++++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+
T Consensus 89 A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 168 (501)
T 4g26_A 89 GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE 168 (501)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 99999999980899989999999999984697788999999999728988611104899999988899999999999986
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf 699989888999999998039999999999998779999999999999999998
Q 002549 320 SGRNPDVVTYTVLIDSLGKANKISEAANVMSEMLDASVKPTLRTYSALICGYAK 373 (909)
Q Consensus 320 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 373 (909)
.|+.||..+|+.++.+|++.|+.++|.+++++|.+.+..|+..||+.++..++.
T Consensus 169 ~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 169 SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHC
T ss_conf 299999999999999985389899999999999994899699999999999830
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=205.31 Aligned_cols=203 Identities=8% Similarity=0.041 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Q ss_conf 47999999962018867899999999844799875859999999997199899999999979749999822099999999
Q 002549 640 SIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQAL 719 (909)
Q Consensus 640 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 719 (909)
..+..++..+...|++++|...++++.+. .|.+...+..++.++...|++++|...++++++..|. +...+..++..+
T Consensus 271 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~ 348 (514)
T 2gw1_A 271 NSYIYMALIMADRNDSTEYYNYFDKALKL-DSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPE-NIFPYIQLACLA 348 (514)
T ss_dssp HHHHHHHHHHHTSSCCTTGGGHHHHHHTT-CTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSS-CSHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCHH-HHHHHHHHHHHH
T ss_conf 99999999999888899999999998613-8677899999999999807799999999999873850-289999999999
Q ss_pred HHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC-CCH----HHHHHHHHHHHHC---
Q ss_conf 94083305999999987399986289999999999920799889999999886598-852----7889999999862---
Q 002549 720 IVDGRLNELYVVIQELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYHGMKAAGY-FPT----MYLYRVMSGLFCK--- 791 (909)
Q Consensus 720 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~--- 791 (909)
...|++++|...++++.+.. +.+...+..++.++...|++++|...++++..... .+. ...+..++..+..
T Consensus 349 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 427 (514)
T 2gw1_A 349 YRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPT 427 (514)
T ss_dssp TTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCC
T ss_pred HHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98689999999999999875-46778999999999878899999999999997612332178999999999999866332
Q ss_pred CCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCH
Q ss_conf 573378999999999879888-9774999999961548878899999999983999784
Q 002549 792 GKRVRDVEAMVSEMKEAGFKP-DLSIWNSMLKLYTGIEDFKKTIQVYQEIQEADLQPDE 849 (909)
Q Consensus 792 ~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 849 (909)
.|++++|...++++.+. .| +...+..++.++...|++++|.+.++++++ +.|+.
T Consensus 428 ~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~ 482 (514)
T 2gw1_A 428 VENFIEATNLLEKASKL--DPRSEQAKIGLAQMKLQQEDIDEAITLFEESAD--LARTM 482 (514)
T ss_dssp TTHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSH
T ss_pred CCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH--HCCCC
T ss_conf 58889999999999875--855589999999999982579999999999987--66146
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=1.00 E-value=1 Score=199.91 Aligned_cols=239 Identities=12% Similarity=0.090 Sum_probs=112.8
Q ss_pred CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCHHHH
Q ss_conf 99824799999996201886789999999984479987585999999999719989999999997974999982209999
Q 002549 636 FEDLSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGL 715 (909)
Q Consensus 636 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 715 (909)
|++..++..++.+|...|++++|...++++.+. .|.+...+..++.++...|++++|...++++++..|. +...+..+
T Consensus 174 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~ 251 (450)
T 2y4t_A 174 VWDAELRELRAECFIKEGEPRKAISDLKAASKL-KNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHY 251 (450)
T ss_dssp TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHH-HCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-HHHHHHHH
T ss_conf 897699999999998779999999999999986-8898799999999999759999999999999875998-08999999
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC-CH--HHHHHHHHHHHHCC
Q ss_conf 9999940833059999999873999862899999999999207998899999998865988-52--78899999998625
Q 002549 716 LQALIVDGRLNELYVVIQELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYHGMKAAGYF-PT--MYLYRVMSGLFCKG 792 (909)
Q Consensus 716 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-p~--~~~~~~l~~~~~~~ 792 (909)
... + .......++..+...|++++|...++++.+.... |. ..++..++..+.+.
T Consensus 252 ~~~----~-------------------~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~ 308 (450)
T 2y4t_A 252 KQV----K-------------------KLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKD 308 (450)
T ss_dssp HHH----H-------------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTT
T ss_pred HHH----H-------------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 999----9-------------------99999999999987179999999999998508733689999999999999987
Q ss_pred CCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHH------------H
Q ss_conf 73378999999999879888-9774999999961548878899999999983999784-22999999------------9
Q 002549 793 KRVRDVEAMVSEMKEAGFKP-DLSIWNSMLKLYTGIEDFKKTIQVYQEIQEADLQPDE-DSFNTLII------------M 858 (909)
Q Consensus 793 g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~------------~ 858 (909)
|++++|+..++++.+. .| +...+..++.+|...|++++|...++++++ +.|+. ..+..++. .
T Consensus 309 g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~~~~ 384 (450)
T 2y4t_A 309 EKPVEAIRVCSEVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQE--HNENDQQIREGLEKAQRLLKQSQKRDY 384 (450)
T ss_dssp TCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TSSSCHHHHHHHHHHHHHHHHHHSCCS
T ss_pred CCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHHHHHCCCCHHH
T ss_conf 8899999999999884--845489999999999870379999999999988--593529999999999998643350569
Q ss_pred HHHCC-----CHHHHHHHHHHHHHCCCCCC----H-------HHHHHHHHHHHCCCCHHHHH
Q ss_conf 99349-----91659999999997399988----2-------43999999884059978899
Q 002549 859 YCRDC-----RPEEGLSLMHEMRKLGLEPK----L-------DTYKSLISAFGKQQQLEQAE 904 (909)
Q Consensus 859 ~~~~g-----~~~~A~~~~~~~~~~~~~p~----~-------~~~~~l~~~~~~~g~~~~A~ 904 (909)
|...| +.+++.+.++++... ..|+ . ..+..+..+|-..|+.+++.
T Consensus 385 y~~lg~~~~~~~~~~~~~y~~~~l~-~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~ 445 (450)
T 2y4t_A 385 YKILGVKRNAKKQEIIKAYRKLALQ-WHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRK 445 (450)
T ss_dssp GGGSCSSTTCCTTHHHHHHHHHHHH-SCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC-
T ss_pred HHHHCCCCCCCHHHHHHHHHHHHHH-HCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHH
T ss_conf 9981898668989999999999997-598979993478999999999999999868999997
No 9
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=197.43 Aligned_cols=231 Identities=10% Similarity=-0.003 Sum_probs=141.8
Q ss_pred CHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHH
Q ss_conf 24799999996201886789999999984479987585999999999719989999999997974999982209999999
Q 002549 639 LSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQA 718 (909)
Q Consensus 639 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 718 (909)
...+..++..+...|++++|...++++.+.. |. ...+..++.++...|++++|...++++++..|. +...+..++.+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~ 313 (514)
T 2gw1_A 237 AISLEHTGIFKFLKNDPLGAHEDIKKAIELF-PR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSN-NSSVYYHRGQM 313 (514)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC-CC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTT-CTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC-CHHHHHHHHHH
T ss_conf 9999999999998789999999999998638-64-899999999999888899999999998613867-78999999999
Q ss_pred HHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHH
Q ss_conf 99408330599999998739998628999999999992079988999999988659885278899999998625733789
Q 002549 719 LIVDGRLNELYVVIQELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYHGMKAAGYFPTMYLYRVMSGLFCKGKRVRDV 798 (909)
Q Consensus 719 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 798 (909)
+...|++++|...++++.+.... +...+..++.++...|++++|...++++.+.. +.+...+..++..+...|++++|
T Consensus 314 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 391 (514)
T 2gw1_A 314 NFILQNYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKA 391 (514)
T ss_dssp HHHTTCTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHCCHHHHHHHHHHHHHHCHH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHH
T ss_conf 99807799999999999873850-28999999999998689999999999999875-46778999999999878899999
Q ss_pred HHHHHHHHHCCCCCCH-------HHHHHHHHHHHC---CCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHCCCHHH
Q ss_conf 9999999987988897-------749999999615---4887889999999998399978-4229999999993499165
Q 002549 799 EAMVSEMKEAGFKPDL-------SIWNSMLKLYTG---IEDFKKTIQVYQEIQEADLQPD-EDSFNTLIIMYCRDCRPEE 867 (909)
Q Consensus 799 ~~~~~~~~~~~~~p~~-------~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~ 867 (909)
+..++++.+. .|+. ..+..++.++.. .|++++|...++++++ ..|+ ..++..++.+|...|++++
T Consensus 392 ~~~~~~a~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~la~~~~~~g~~~~ 467 (514)
T 2gw1_A 392 LKQYDLAIEL--ENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASK--LDPRSEQAKIGLAQMKLQQEDIDE 467 (514)
T ss_dssp HHHHHHHHHH--HHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHH--HHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHCCHHH
T ss_conf 9999999976--123321789999999999998663325888999999999987--585558999999999998257999
Q ss_pred HHHHHHHHHHC
Q ss_conf 99999999973
Q 002549 868 GLSLMHEMRKL 878 (909)
Q Consensus 868 A~~~~~~~~~~ 878 (909)
|.+.++++.+.
T Consensus 468 A~~~~~~a~~~ 478 (514)
T 2gw1_A 468 AITLFEESADL 478 (514)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
T ss_conf 99999999876
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=1.00 E-value=1 Score=194.10 Aligned_cols=206 Identities=12% Similarity=0.074 Sum_probs=107.6
Q ss_pred CHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHH
Q ss_conf 24799999996201886789999999984479987585999999999719989999999997974999982209999999
Q 002549 639 LSIYVDIIDAYGRLKLWQKAESLVGCLRQRCAPVDRKVWNALIKAYAASGCYERARAVFNTMMRDGPSPTVDSINGLLQA 718 (909)
Q Consensus 639 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 718 (909)
...+..++..+...|++++|...++++.+. .|.+..++..++.++...|++++|...++++++..|. +...+..++.+
T Consensus 276 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~ 353 (537)
T 3fp2_A 276 PNSYIFLALTLADKENSQEFFKFFQKAVDL-NPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPE-NVYPYIQLACL 353 (537)
T ss_dssp HHHHHHHHHHTCCSSCCHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHH
T ss_conf 469999999999803799999999997545-9998799999999998668999999999999985999-77999999999
Q ss_pred HHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC-----CCCHHHHHHHHHHHHHCC-
Q ss_conf 99408330599999998739998628999999999992079988999999988659-----885278899999998625-
Q 002549 719 LIVDGRLNELYVVIQELQDMDFKISKSSILLMLDAFARSGNIFEVKKIYHGMKAAG-----YFPTMYLYRVMSGLFCKG- 792 (909)
Q Consensus 719 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-----~~p~~~~~~~l~~~~~~~- 792 (909)
+...|++++|...++++.+.. +.+...+..++.++...|++++|...++++.+.. .......+...+..+...
T Consensus 354 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 432 (537)
T 3fp2_A 354 LYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQS 432 (537)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 998477999999999998739-9985999999999988378899999999998709762446888999998899999976
Q ss_pred ---------CCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHH
Q ss_conf ---------73378999999999879888-977499999996154887889999999998399978422
Q 002549 793 ---------KRVRDVEAMVSEMKEAGFKP-DLSIWNSMLKLYTGIEDFKKTIQVYQEIQEADLQPDEDS 851 (909)
Q Consensus 793 ---------g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 851 (909)
|++++|+..++++.+. .| +...+..++.+|...|++++|.+.++++++ +.|+...
T Consensus 433 ~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~~~~~~ 497 (537)
T 3fp2_A 433 SQDPTQLDEEKFNAAIKLLTKACEL--DPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAI--LARTMDE 497 (537)
T ss_dssp TC----CCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HC--CHH
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH--HCCCCHH
T ss_conf 4010022475799999999999974--999789999999999985149999999999998--6899388
Done!