Query 002552
Match_columns 908
No_of_seqs 672 out of 4309
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 02:17:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002552.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002552hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0922 DEAH-box RNA helicase 100.0 1E-113 2E-118 950.3 48.3 561 271-902 40-603 (674)
2 KOG0920 ATP-dependent RNA heli 100.0 1E-113 3E-118 1001.0 46.2 587 261-879 152-741 (924)
3 KOG0923 mRNA splicing factor A 100.0 2E-112 4E-117 924.9 42.4 564 270-903 253-820 (902)
4 KOG0924 mRNA splicing factor A 100.0 7E-110 2E-114 904.7 42.2 556 272-903 346-909 (1042)
5 KOG0925 mRNA splicing factor A 100.0 3E-107 7E-112 856.7 41.0 564 261-906 26-598 (699)
6 PRK11131 ATP-dependent RNA hel 100.0 7.3E-99 2E-103 912.5 53.3 554 274-906 66-627 (1294)
7 COG1643 HrpA HrpA-like helicas 100.0 6.8E-97 1E-101 867.5 49.7 557 258-884 26-598 (845)
8 TIGR01967 DEAH_box_HrpA ATP-de 100.0 2.6E-96 6E-101 894.3 53.7 539 272-879 57-601 (1283)
9 KOG0926 DEAH-box RNA helicase 100.0 1.2E-90 2.6E-95 766.2 41.1 538 268-873 242-919 (1172)
10 TIGR01970 DEAH_box_HrpB ATP-de 100.0 4.1E-83 8.9E-88 765.4 44.4 446 281-798 1-447 (819)
11 PRK11664 ATP-dependent RNA hel 100.0 3.4E-80 7.4E-85 742.5 42.5 444 280-795 3-449 (812)
12 KOG0921 Dosage compensation co 100.0 1.2E-68 2.6E-73 597.4 25.9 606 264-877 360-968 (1282)
13 PHA02653 RNA helicase NPH-II; 100.0 3E-58 6.5E-63 538.8 34.0 402 285-779 167-596 (675)
14 KOG0331 ATP-dependent RNA heli 100.0 1.5E-51 3.2E-56 456.3 27.0 344 261-688 92-451 (519)
15 KOG0330 ATP-dependent RNA heli 100.0 2.7E-48 5.8E-53 402.3 22.7 327 267-684 68-406 (476)
16 PTZ00110 helicase; Provisional 100.0 1E-46 2.2E-51 441.3 34.0 327 275-687 145-486 (545)
17 PRK01172 ski2-like helicase; P 100.0 1.1E-44 2.4E-49 437.9 43.7 521 269-872 10-583 (674)
18 PRK02362 ski2-like helicase; P 100.0 6.3E-44 1.4E-48 434.1 42.9 530 270-873 11-624 (737)
19 KOG0333 U5 snRNP-like RNA heli 100.0 2.1E-45 4.6E-50 392.9 22.6 322 273-686 258-625 (673)
20 KOG0335 ATP-dependent RNA heli 100.0 4.4E-46 9.4E-51 405.4 16.7 364 211-684 48-443 (482)
21 COG0513 SrmB Superfamily II DN 100.0 1.1E-44 2.4E-49 420.1 29.1 329 267-685 36-380 (513)
22 KOG0338 ATP-dependent RNA heli 100.0 2E-44 4.3E-49 383.7 21.4 348 255-686 176-534 (691)
23 PRK11776 ATP-dependent RNA hel 100.0 1.6E-43 3.4E-48 410.4 30.9 326 269-687 13-351 (460)
24 PRK04837 ATP-dependent RNA hel 100.0 3.3E-43 7.2E-48 403.3 30.5 329 267-687 15-364 (423)
25 PRK00254 ski2-like helicase; P 100.0 5.3E-42 1.1E-46 416.3 41.7 531 266-873 7-615 (720)
26 KOG0336 ATP-dependent RNA heli 100.0 2.4E-44 5.1E-49 373.2 17.2 318 280-688 240-575 (629)
27 PRK10590 ATP-dependent RNA hel 100.0 1.1E-42 2.4E-47 401.6 31.2 331 265-687 6-354 (456)
28 PRK11634 ATP-dependent RNA hel 100.0 1.5E-42 3.2E-47 409.4 32.3 327 267-686 13-353 (629)
29 PRK04537 ATP-dependent RNA hel 100.0 4.3E-42 9.4E-47 403.5 32.0 326 269-686 18-365 (572)
30 PLN00206 DEAD-box ATP-dependen 100.0 5E-42 1.1E-46 400.8 31.5 347 234-687 112-477 (518)
31 PRK11192 ATP-dependent RNA hel 100.0 7.8E-42 1.7E-46 393.8 31.1 335 263-688 4-355 (434)
32 KOG0342 ATP-dependent RNA heli 100.0 2.5E-42 5.4E-47 368.7 24.0 342 260-686 82-438 (543)
33 KOG0328 Predicted ATP-dependen 100.0 3.7E-42 7.9E-47 341.9 20.8 338 245-688 25-376 (400)
34 KOG0345 ATP-dependent RNA heli 100.0 2.1E-41 4.6E-46 358.7 25.0 344 269-701 15-383 (567)
35 KOG0343 RNA Helicase [RNA proc 100.0 1.1E-41 2.4E-46 365.9 23.0 343 261-687 70-424 (758)
36 PRK01297 ATP-dependent RNA hel 100.0 7.7E-41 1.7E-45 388.9 31.9 326 269-686 96-443 (475)
37 KOG0340 ATP-dependent RNA heli 100.0 6.1E-41 1.3E-45 343.7 24.1 322 279-686 26-362 (442)
38 KOG0339 ATP-dependent RNA heli 100.0 1.5E-41 3.2E-46 361.1 18.3 367 219-688 199-578 (731)
39 PTZ00424 helicase 45; Provisio 100.0 2.8E-40 6.1E-45 377.9 27.8 334 262-688 30-377 (401)
40 KOG0348 ATP-dependent RNA heli 100.0 1.8E-39 3.9E-44 347.9 23.5 373 281-705 158-576 (708)
41 KOG0326 ATP-dependent RNA heli 100.0 4.3E-40 9.4E-45 332.2 16.8 311 282-686 107-430 (459)
42 TIGR03817 DECH_helic helicase/ 100.0 1.5E-38 3.2E-43 382.6 31.2 338 273-684 27-385 (742)
43 KOG0341 DEAD-box protein abstr 100.0 2.4E-40 5.1E-45 341.3 11.4 348 234-687 161-530 (610)
44 KOG0347 RNA helicase [RNA proc 100.0 2.6E-38 5.7E-43 340.0 18.7 361 261-686 182-571 (731)
45 COG1202 Superfamily II helicas 100.0 6.3E-37 1.4E-41 330.6 27.8 433 265-793 199-679 (830)
46 COG1204 Superfamily II helicas 100.0 6E-37 1.3E-41 364.1 29.1 507 283-866 32-630 (766)
47 KOG0332 ATP-dependent RNA heli 100.0 2.3E-37 5.1E-42 319.1 18.9 339 247-685 90-443 (477)
48 TIGR00614 recQ_fam ATP-depende 100.0 2.3E-36 5E-41 350.1 29.3 305 282-688 11-336 (470)
49 PLN03137 ATP-dependent DNA hel 100.0 1.4E-36 3.1E-41 361.2 27.6 322 265-688 442-790 (1195)
50 PRK13767 ATP-dependent helicas 100.0 9.9E-36 2.1E-40 365.3 33.2 395 283-746 33-477 (876)
51 PRK11057 ATP-dependent DNA hel 100.0 7.1E-36 1.5E-40 354.8 24.6 303 282-688 25-346 (607)
52 KOG0334 RNA helicase [RNA proc 100.0 5.3E-36 1.1E-40 347.6 20.1 337 262-685 367-720 (997)
53 KOG0350 DEAD-box ATP-dependent 100.0 4.5E-35 9.7E-40 312.5 22.1 331 273-686 150-541 (620)
54 KOG0346 RNA helicase [RNA proc 100.0 4.2E-35 9.1E-40 308.1 20.3 335 261-685 20-410 (569)
55 TIGR01389 recQ ATP-dependent D 100.0 6.8E-34 1.5E-38 339.0 27.2 303 282-688 13-334 (591)
56 COG1201 Lhr Lhr-like helicases 100.0 1.6E-33 3.6E-38 329.7 28.7 385 270-743 11-438 (814)
57 PRK09751 putative ATP-dependen 100.0 1.6E-33 3.6E-38 349.4 27.3 313 302-679 1-379 (1490)
58 TIGR00580 mfd transcription-re 100.0 5.6E-33 1.2E-37 336.9 30.1 301 278-684 447-769 (926)
59 KOG0344 ATP-dependent RNA heli 100.0 7.1E-34 1.5E-38 311.3 20.0 322 280-687 156-497 (593)
60 COG1111 MPH1 ERCC4-like helica 100.0 1.2E-32 2.6E-37 297.2 26.5 374 282-685 15-481 (542)
61 TIGR02621 cas3_GSU0051 CRISPR- 100.0 1.6E-32 3.4E-37 323.2 27.4 338 281-711 14-418 (844)
62 PRK10917 ATP-dependent DNA hel 100.0 4.1E-32 8.8E-37 325.9 28.3 301 279-683 258-587 (681)
63 KOG4284 DEAD box protein [Tran 100.0 6.4E-33 1.4E-37 302.6 18.1 342 246-685 24-379 (980)
64 PRK10689 transcription-repair 100.0 3.8E-32 8.2E-37 336.6 27.3 301 279-684 597-918 (1147)
65 KOG0327 Translation initiation 100.0 4.5E-33 9.8E-38 290.9 15.5 335 248-688 27-373 (397)
66 TIGR00643 recG ATP-dependent D 100.0 2.2E-31 4.8E-36 317.7 28.7 301 281-683 234-564 (630)
67 KOG0354 DEAD-box like helicase 100.0 3.1E-31 6.6E-36 302.9 26.8 381 278-684 58-528 (746)
68 KOG0337 ATP-dependent RNA heli 100.0 1.6E-31 3.6E-36 279.9 16.0 316 282-686 43-369 (529)
69 KOG0952 DNA/RNA helicase MER3/ 100.0 2.4E-30 5.3E-35 297.3 24.5 461 285-811 113-657 (1230)
70 TIGR01587 cas3_core CRISPR-ass 100.0 2.2E-30 4.9E-35 291.4 23.6 299 299-686 1-337 (358)
71 PRK09401 reverse gyrase; Revie 100.0 1.7E-29 3.8E-34 313.6 24.6 298 274-671 72-429 (1176)
72 PHA02558 uvsW UvsW helicase; P 100.0 7.6E-29 1.7E-33 288.8 28.4 326 280-677 112-443 (501)
73 TIGR03158 cas3_cyano CRISPR-as 100.0 4.5E-29 9.7E-34 278.2 22.8 306 286-671 1-357 (357)
74 PRK13766 Hef nuclease; Provisi 100.0 2.3E-28 4.9E-33 301.6 28.3 374 280-685 13-479 (773)
75 COG0514 RecQ Superfamily II DN 100.0 1.2E-28 2.5E-33 279.3 21.1 301 285-687 20-339 (590)
76 PRK14701 reverse gyrase; Provi 100.0 4.8E-28 1E-32 306.5 22.7 322 272-685 69-456 (1638)
77 KOG0951 RNA helicase BRR2, DEA 100.0 1.3E-26 2.8E-31 269.3 30.4 424 283-772 310-825 (1674)
78 KOG0921 Dosage compensation co 100.0 3.6E-30 7.8E-35 289.7 0.1 577 270-878 394-972 (1282)
79 COG1205 Distinct helicase fami 100.0 1.3E-27 2.9E-32 288.5 21.2 332 278-684 66-421 (851)
80 TIGR01054 rgy reverse gyrase. 100.0 4.9E-27 1.1E-31 292.4 25.5 283 273-643 69-412 (1171)
81 KOG0948 Nuclear exosomal RNA h 99.9 2.8E-27 6E-32 262.8 14.2 364 281-685 128-539 (1041)
82 KOG0947 Cytoplasmic exosomal R 99.9 1.5E-26 3.2E-31 263.1 19.6 373 279-685 294-723 (1248)
83 TIGR03714 secA2 accessory Sec 99.9 5E-25 1.1E-29 257.6 30.5 107 552-686 422-538 (762)
84 PRK12898 secA preprotein trans 99.9 4.5E-25 9.8E-30 255.2 26.9 368 276-686 97-587 (656)
85 KOG0349 Putative DEAD-box RNA 99.9 3E-26 6.4E-31 240.1 14.8 303 330-684 286-614 (725)
86 COG4581 Superfamily II RNA hel 99.9 1.1E-25 2.5E-30 267.2 21.7 366 279-683 116-535 (1041)
87 TIGR00603 rad25 DNA repair hel 99.9 4.8E-25 1E-29 257.9 25.6 328 279-686 252-608 (732)
88 PRK09200 preprotein translocas 99.9 1.2E-24 2.7E-29 256.9 28.4 366 279-686 75-542 (790)
89 TIGR00963 secA preprotein tran 99.9 1.5E-24 3.2E-29 252.0 24.6 108 552-686 403-518 (745)
90 KOG0352 ATP-dependent DNA heli 99.9 9.9E-25 2.2E-29 228.8 19.0 309 285-688 23-365 (641)
91 PRK05580 primosome assembly pr 99.9 3.4E-24 7.3E-29 256.5 22.8 319 280-681 142-545 (679)
92 PRK09694 helicase Cas3; Provis 99.9 1.5E-23 3.3E-28 252.2 25.1 326 280-673 284-662 (878)
93 KOG0329 ATP-dependent RNA heli 99.9 5.4E-24 1.2E-28 209.5 16.8 282 279-687 61-357 (387)
94 COG1061 SSL2 DNA or RNA helica 99.9 9.8E-23 2.1E-27 232.9 26.3 322 279-673 33-376 (442)
95 KOG0351 ATP-dependent DNA heli 99.9 8.6E-24 1.9E-28 253.3 17.6 307 285-689 267-596 (941)
96 COG1200 RecG RecG-like helicas 99.9 1.9E-22 4.1E-27 227.9 23.0 301 280-685 260-591 (677)
97 PRK11448 hsdR type I restricti 99.9 5.8E-22 1.3E-26 245.4 28.9 356 281-684 412-814 (1123)
98 COG4098 comFA Superfamily II D 99.9 1.3E-21 2.8E-26 201.3 25.0 296 288-681 107-412 (441)
99 KOG0950 DNA polymerase theta/e 99.9 8E-23 1.7E-27 235.2 18.0 349 276-686 217-612 (1008)
100 TIGR00595 priA primosomal prot 99.9 9.7E-23 2.1E-27 235.6 15.2 295 301-680 1-376 (505)
101 KOG0353 ATP-dependent DNA heli 99.9 4.4E-21 9.5E-26 198.3 19.2 304 284-685 96-467 (695)
102 PRK04914 ATP-dependent helicas 99.9 1E-20 2.2E-25 229.3 24.5 371 281-685 151-605 (956)
103 COG1197 Mfd Transcription-repa 99.9 1.9E-20 4.1E-25 222.9 25.6 306 273-684 585-912 (1139)
104 PRK13104 secA preprotein trans 99.8 2.2E-18 4.8E-23 203.4 30.3 126 278-409 76-213 (896)
105 PRK12906 secA preprotein trans 99.8 1.5E-18 3.2E-23 204.0 22.7 107 552-685 438-553 (796)
106 cd00268 DEADc DEAD-box helicas 99.8 1.1E-18 2.5E-23 180.0 18.2 163 279-443 18-187 (203)
107 PRK12904 preprotein translocas 99.8 4.7E-18 1E-22 200.6 23.3 123 279-409 78-212 (830)
108 PF00270 DEAD: DEAD/DEAH box h 99.8 3E-18 6.6E-23 171.2 17.8 156 284-445 1-166 (169)
109 KOG0949 Predicted helicase, DE 99.8 9E-18 1.9E-22 192.3 20.5 163 281-450 510-682 (1330)
110 COG1203 CRISPR-associated heli 99.8 2.2E-17 4.7E-22 200.0 22.3 314 282-684 195-549 (733)
111 PRK12899 secA preprotein trans 99.7 1.4E-16 3.1E-21 187.7 23.0 121 283-409 93-226 (970)
112 PRK13107 preprotein translocas 99.7 4.3E-16 9.3E-21 183.5 25.5 122 280-409 80-213 (908)
113 COG4096 HsdR Type I site-speci 99.7 1.6E-15 3.5E-20 174.0 28.4 374 284-711 167-574 (875)
114 COG1110 Reverse gyrase [DNA re 99.7 4.1E-15 9E-20 172.9 23.4 279 272-641 72-418 (1187)
115 PF04408 HA2: Helicase associa 99.7 1.3E-16 2.7E-21 144.4 7.2 92 736-827 1-102 (102)
116 KOG0953 Mitochondrial RNA heli 99.7 2.3E-15 5E-20 164.2 18.1 281 296-685 190-477 (700)
117 TIGR00348 hsdR type I site-spe 99.6 1.1E-14 2.4E-19 174.7 24.4 343 284-673 240-634 (667)
118 PLN03142 Probable chromatin-re 99.6 3.8E-14 8.3E-19 173.0 26.1 110 553-687 486-601 (1033)
119 TIGR01407 dinG_rel DnaQ family 99.6 1.7E-13 3.7E-18 169.7 25.2 134 541-681 662-811 (850)
120 smart00487 DEXDc DEAD-like hel 99.5 1.2E-13 2.5E-18 141.1 16.5 156 280-441 6-171 (201)
121 PRK12900 secA preprotein trans 99.5 3.4E-13 7.4E-18 159.8 21.5 107 553-686 597-712 (1025)
122 smart00847 HA2 Helicase associ 99.5 1.6E-14 3.4E-19 128.6 6.7 91 736-827 1-92 (92)
123 cd00046 DEXDc DEAD-like helica 99.5 3.2E-13 7E-18 129.5 14.4 137 298-440 1-144 (144)
124 TIGR00631 uvrb excinuclease AB 99.5 1.2E-13 2.7E-18 163.9 11.3 120 541-685 428-553 (655)
125 COG0556 UvrB Helicase subunit 99.5 1.2E-11 2.6E-16 135.4 23.6 123 541-683 432-555 (663)
126 cd00079 HELICc Helicase superf 99.4 4.1E-13 9E-18 127.7 10.3 104 553-681 27-131 (131)
127 PRK12326 preprotein translocas 99.4 2.1E-11 4.5E-16 141.1 24.4 128 274-409 70-209 (764)
128 PF00271 Helicase_C: Helicase 99.4 1.2E-13 2.5E-18 118.9 4.6 72 584-673 6-77 (78)
129 PRK05298 excinuclease ABC subu 99.4 7.7E-13 1.7E-17 158.4 12.2 122 543-684 434-556 (652)
130 COG1198 PriA Primosomal protei 99.4 3.9E-12 8.4E-17 149.7 17.6 155 280-448 196-367 (730)
131 PF07652 Flavi_DEAD: Flaviviru 99.4 4.8E-12 1E-16 118.0 14.3 134 296-442 3-138 (148)
132 PF04851 ResIII: Type III rest 99.4 3.5E-12 7.5E-17 129.0 12.5 147 281-441 2-183 (184)
133 TIGR02562 cas3_yersinia CRISPR 99.4 3.5E-11 7.5E-16 143.7 21.4 97 557-675 759-881 (1110)
134 KOG4150 Predicted ATP-dependen 99.3 7.6E-12 1.6E-16 136.5 12.0 323 279-679 283-634 (1034)
135 PRK07246 bifunctional ATP-depe 99.3 4.3E-10 9.4E-15 137.7 27.7 128 541-681 636-780 (820)
136 KOG1123 RNA polymerase II tran 99.3 5.3E-11 1.1E-15 128.6 15.9 296 281-674 301-635 (776)
137 KOG0951 RNA helicase BRR2, DEA 99.3 5.8E-11 1.3E-15 140.4 16.4 332 284-696 1145-1508(1674)
138 smart00490 HELICc helicase sup 99.2 1E-11 2.2E-16 107.5 5.7 79 570-673 3-81 (82)
139 PRK13103 secA preprotein trans 99.2 1.7E-09 3.6E-14 128.6 25.2 121 281-409 81-213 (913)
140 PRK12903 secA preprotein trans 99.1 4E-09 8.7E-14 124.1 20.9 103 553-683 425-537 (925)
141 PRK08074 bifunctional ATP-depe 99.1 1.6E-08 3.5E-13 126.3 26.7 135 541-681 740-890 (928)
142 KOG0385 Chromatin remodeling c 99.1 4.1E-09 8.9E-14 119.9 18.6 367 282-686 167-600 (971)
143 PF02399 Herpes_ori_bp: Origin 99.1 1.3E-08 2.8E-13 119.2 22.1 321 296-685 48-388 (824)
144 CHL00122 secA preprotein trans 99.0 1.7E-08 3.7E-13 119.6 21.6 122 280-409 74-207 (870)
145 COG4889 Predicted helicase [Ge 98.9 6.4E-09 1.4E-13 119.2 10.5 76 585-678 499-577 (1518)
146 PRK12902 secA preprotein trans 98.9 1E-07 2.2E-12 113.0 19.8 122 280-409 83-216 (939)
147 PRK11747 dinG ATP-dependent DN 98.8 6.8E-07 1.5E-11 108.4 25.2 129 541-681 523-671 (697)
148 KOG0384 Chromodomain-helicase 98.8 3.3E-07 7.1E-12 109.8 21.2 135 552-711 697-835 (1373)
149 TIGR00604 rad3 DNA repair heli 98.8 1.7E-07 3.6E-12 114.5 18.6 132 541-675 510-663 (705)
150 KOG0390 DNA repair protein, SN 98.7 2.5E-06 5.4E-11 100.7 26.2 108 557-685 597-707 (776)
151 KOG0387 Transcription-coupled 98.7 5.2E-07 1.1E-11 103.8 19.5 113 553-686 545-659 (923)
152 COG1199 DinG Rad3-related DNA 98.7 9.8E-07 2.1E-11 107.6 22.2 131 541-681 467-614 (654)
153 TIGR03117 cas_csf4 CRISPR-asso 98.6 1.8E-07 3.9E-12 110.0 13.1 63 288-353 7-69 (636)
154 PRK14873 primosome assembly pr 98.6 4.2E-07 9.1E-12 108.3 15.6 127 306-447 169-310 (665)
155 PF06862 DUF1253: Protein of u 98.6 7.2E-06 1.6E-10 92.0 22.2 247 375-687 131-417 (442)
156 KOG1000 Chromatin remodeling p 98.5 8.9E-05 1.9E-09 81.5 26.9 96 541-643 474-576 (689)
157 PF00176 SNF2_N: SNF2 family N 98.4 3.1E-06 6.8E-11 92.6 12.8 134 296-440 24-172 (299)
158 KOG0392 SNF2 family DNA-depend 98.2 7.2E-05 1.6E-09 90.1 20.7 115 554-687 1340-1456(1549)
159 KOG2340 Uncharacterized conser 98.1 2.8E-05 6.1E-10 85.9 13.0 111 554-686 552-669 (698)
160 TIGR00596 rad1 DNA repair prot 98.1 1.5E-05 3.3E-10 96.7 12.0 67 375-442 7-74 (814)
161 COG0610 Type I site-specific r 98.1 7.7E-05 1.7E-09 93.2 17.9 135 298-440 274-413 (962)
162 PF13245 AAA_19: Part of AAA d 98.0 1.8E-05 3.9E-10 67.1 7.2 57 293-350 6-62 (76)
163 PF13604 AAA_30: AAA domain; P 98.0 2.8E-05 6E-10 79.4 9.8 120 284-438 3-129 (196)
164 KOG0389 SNF2 family DNA-depend 98.0 0.00018 3.8E-09 83.5 16.9 113 553-687 776-890 (941)
165 TIGR01447 recD exodeoxyribonuc 97.9 0.00016 3.4E-09 85.7 15.9 139 285-437 148-293 (586)
166 PF00448 SRP54: SRP54-type pro 97.9 4.8E-05 1E-09 77.5 9.2 127 298-445 2-130 (196)
167 KOG0952 DNA/RNA helicase MER3/ 97.9 5.8E-06 1.3E-10 98.0 2.8 154 297-454 943-1108(1230)
168 PF13401 AAA_22: AAA domain; P 97.9 3.4E-05 7.3E-10 73.2 7.0 119 295-439 2-125 (131)
169 PRK12723 flagellar biosynthesi 97.8 0.0002 4.4E-09 80.2 12.4 131 297-450 174-307 (388)
170 PF02562 PhoH: PhoH-like prote 97.7 0.00017 3.8E-09 73.2 10.5 57 282-341 4-60 (205)
171 PRK10875 recD exonuclease V su 97.7 0.00022 4.9E-09 84.6 12.4 139 284-437 154-299 (615)
172 KOG1002 Nucleotide excision re 97.6 0.0067 1.4E-07 67.0 20.9 123 541-685 622-749 (791)
173 KOG1803 DNA helicase [Replicat 97.6 0.00017 3.7E-09 81.8 9.0 64 283-351 186-250 (649)
174 PF07517 SecA_DEAD: SecA DEAD- 97.6 0.00028 6E-09 74.8 9.8 127 276-410 71-209 (266)
175 COG1419 FlhF Flagellar GTP-bin 97.6 0.0014 3E-08 72.3 15.4 130 296-449 202-332 (407)
176 PRK14722 flhF flagellar biosyn 97.6 0.0005 1.1E-08 76.4 12.1 127 294-445 134-262 (374)
177 PRK11889 flhF flagellar biosyn 97.6 0.00077 1.7E-08 74.4 12.6 125 297-444 241-366 (436)
178 smart00488 DEXDc2 DEAD-like he 97.5 0.0002 4.4E-09 77.7 7.9 73 280-352 6-83 (289)
179 smart00489 DEXDc3 DEAD-like he 97.5 0.0002 4.4E-09 77.7 7.9 73 280-352 6-83 (289)
180 KOG0386 Chromatin remodeling c 97.5 0.00061 1.3E-08 81.1 11.2 110 553-687 725-840 (1157)
181 PF09848 DUF2075: Uncharacteri 97.5 0.00029 6.3E-09 79.0 8.5 94 298-412 2-96 (352)
182 PRK05703 flhF flagellar biosyn 97.5 0.0052 1.1E-07 70.3 18.6 127 296-446 220-348 (424)
183 TIGR01448 recD_rel helicase, p 97.5 0.00085 1.8E-08 81.9 12.9 126 279-438 320-451 (720)
184 cd06007 R3H_DEXH_helicase R3H 97.4 0.00026 5.6E-09 56.2 5.3 48 122-169 5-52 (59)
185 PRK15483 type III restriction- 97.4 0.00084 1.8E-08 82.0 12.2 137 298-442 60-240 (986)
186 cd02640 R3H_NRF R3H domain of 97.4 0.00033 7.1E-09 55.9 5.7 49 121-169 4-53 (60)
187 PRK10536 hypothetical protein; 97.4 0.00039 8.4E-09 72.6 7.8 58 281-341 58-115 (262)
188 COG0553 HepA Superfamily II DN 97.4 0.0057 1.2E-07 77.6 19.8 110 556-687 713-824 (866)
189 PRK12901 secA preprotein trans 97.4 0.00056 1.2E-08 82.9 9.4 104 553-683 627-739 (1112)
190 PF13872 AAA_34: P-loop contai 97.4 0.0012 2.5E-08 70.3 10.7 140 297-440 62-220 (303)
191 PRK12726 flagellar biosynthesi 97.3 0.0013 2.7E-08 72.5 10.7 130 296-448 205-335 (407)
192 PF05970 PIF1: PIF1-like helic 97.2 0.0012 2.7E-08 74.2 9.9 111 285-420 4-122 (364)
193 TIGR02768 TraA_Ti Ti-type conj 97.2 0.0023 5E-08 78.5 12.7 123 280-437 350-474 (744)
194 cd00009 AAA The AAA+ (ATPases 97.2 0.0032 7E-08 60.2 11.4 29 289-317 9-39 (151)
195 PRK13889 conjugal transfer rel 97.2 0.0027 5.9E-08 79.0 13.2 126 279-439 343-470 (988)
196 COG0653 SecA Preprotein transl 97.2 0.016 3.5E-07 69.6 19.1 123 281-409 77-211 (822)
197 PF12340 DUF3638: Protein of u 97.2 0.0034 7.3E-08 64.4 11.2 130 274-409 15-183 (229)
198 PF13086 AAA_11: AAA domain; P 97.1 0.00081 1.8E-08 70.5 6.8 69 284-352 3-75 (236)
199 KOG4439 RNA polymerase II tran 97.1 0.035 7.7E-07 64.3 19.6 108 557-686 748-859 (901)
200 PF05729 NACHT: NACHT domain 97.1 0.0018 3.8E-08 63.9 8.6 59 401-459 84-149 (166)
201 PRK12727 flagellar biosynthesi 97.1 0.014 3E-07 67.2 16.2 129 294-446 347-475 (559)
202 PF00580 UvrD-helicase: UvrD/R 97.0 0.0015 3.3E-08 71.9 7.8 69 284-355 2-70 (315)
203 PRK06526 transposase; Provisio 97.0 0.0031 6.7E-08 67.0 9.7 27 294-320 95-121 (254)
204 PF13307 Helicase_C_2: Helicas 97.0 0.0011 2.5E-08 65.8 5.9 116 553-675 8-139 (167)
205 PRK14723 flhF flagellar biosyn 97.0 0.026 5.7E-07 68.1 17.8 125 297-446 185-311 (767)
206 PRK12724 flagellar biosynthesi 96.9 0.0064 1.4E-07 68.2 11.6 129 296-450 222-357 (432)
207 PRK04296 thymidine kinase; Pro 96.9 0.0018 4E-08 65.8 6.5 98 297-424 2-102 (190)
208 PRK14974 cell division protein 96.9 0.0046 1E-07 68.1 9.9 125 297-444 140-268 (336)
209 PRK08181 transposase; Validate 96.8 0.012 2.6E-07 62.9 12.4 115 294-452 103-220 (269)
210 cd02641 R3H_Smubp-2_like R3H d 96.8 0.0031 6.7E-08 50.6 5.8 50 120-169 3-53 (60)
211 PRK06731 flhF flagellar biosyn 96.7 0.012 2.5E-07 62.9 11.3 126 296-445 74-201 (270)
212 PRK14721 flhF flagellar biosyn 96.7 0.013 2.8E-07 66.3 11.9 129 295-447 189-318 (420)
213 PHA03333 putative ATPase subun 96.6 0.058 1.3E-06 63.5 16.5 141 296-451 186-343 (752)
214 TIGR00376 DNA helicase, putati 96.6 0.0048 1E-07 74.3 8.1 67 282-353 157-224 (637)
215 smart00382 AAA ATPases associa 96.5 0.0047 1E-07 58.4 6.2 24 297-320 2-25 (148)
216 PRK07003 DNA polymerase III su 96.5 0.013 2.8E-07 69.9 10.6 50 386-437 107-156 (830)
217 PRK07952 DNA replication prote 96.4 0.026 5.5E-07 59.5 11.5 115 298-451 100-215 (244)
218 KOG1802 RNA helicase nonsense 96.4 0.0077 1.7E-07 68.9 7.5 66 283-352 411-476 (935)
219 TIGR03015 pepcterm_ATPase puta 96.4 0.015 3.2E-07 62.6 9.4 22 297-318 43-64 (269)
220 KOG0391 SNF2 family DNA-depend 96.3 0.019 4.2E-07 69.4 10.7 114 552-687 1274-1389(1958)
221 PRK06835 DNA replication prote 96.3 0.017 3.6E-07 63.7 9.4 116 296-450 182-298 (329)
222 PRK13826 Dtr system oriT relax 96.3 0.026 5.6E-07 70.9 11.8 126 279-439 378-505 (1102)
223 PRK09112 DNA polymerase III su 96.3 0.028 6E-07 62.7 11.0 140 288-437 33-178 (351)
224 PRK06995 flhF flagellar biosyn 96.2 0.046 1E-06 63.0 12.8 126 296-446 255-382 (484)
225 PRK14949 DNA polymerase III su 96.2 0.016 3.6E-07 70.4 9.2 42 393-436 114-155 (944)
226 PF05127 Helicase_RecD: Helica 96.2 0.0013 2.8E-08 65.1 -0.0 117 301-441 1-124 (177)
227 TIGR03499 FlhF flagellar biosy 96.2 0.08 1.7E-06 57.3 13.8 89 296-407 193-281 (282)
228 PTZ00146 fibrillarin; Provisio 96.1 0.0094 2E-07 63.7 6.0 12 397-408 201-212 (293)
229 PRK07764 DNA polymerase III su 96.0 0.029 6.2E-07 69.2 10.4 43 393-437 115-157 (824)
230 COG3587 Restriction endonuclea 96.0 0.041 9E-07 65.2 10.8 52 611-680 483-537 (985)
231 PRK00771 signal recognition pa 96.0 0.054 1.2E-06 61.9 11.7 126 297-443 95-220 (437)
232 PF13173 AAA_14: AAA domain 95.9 0.036 7.9E-07 52.3 8.6 26 296-321 1-26 (128)
233 PRK07994 DNA polymerase III su 95.9 0.027 5.8E-07 67.2 9.1 49 386-436 107-155 (647)
234 PTZ00112 origin recognition co 95.9 0.096 2.1E-06 63.3 13.4 20 299-318 783-802 (1164)
235 PRK10416 signal recognition pa 95.9 0.07 1.5E-06 58.7 11.7 126 296-444 113-248 (318)
236 PRK11054 helD DNA helicase IV; 95.8 0.041 8.9E-07 66.8 10.4 116 271-408 185-302 (684)
237 PF05621 TniB: Bacterial TniB 95.8 0.044 9.6E-07 58.6 9.4 119 298-436 62-186 (302)
238 PRK06893 DNA replication initi 95.8 0.024 5.2E-07 59.5 7.4 48 396-445 89-139 (229)
239 PHA02533 17 large terminase pr 95.8 0.097 2.1E-06 61.6 13.1 152 279-440 56-210 (534)
240 PRK07471 DNA polymerase III su 95.8 0.078 1.7E-06 59.5 11.9 144 288-440 29-181 (365)
241 PRK05642 DNA replication initi 95.8 0.024 5.2E-07 59.6 7.4 16 298-313 46-61 (234)
242 PRK09183 transposase/IS protei 95.7 0.12 2.6E-06 55.2 12.6 114 294-450 99-215 (259)
243 PRK14956 DNA polymerase III su 95.7 0.026 5.6E-07 64.6 7.8 42 394-439 117-158 (484)
244 PTZ00146 fibrillarin; Provisio 95.7 0.016 3.5E-07 61.9 5.8 14 300-313 135-148 (293)
245 PRK08727 hypothetical protein; 95.7 0.026 5.7E-07 59.3 7.3 18 298-315 42-59 (233)
246 PRK09111 DNA polymerase III su 95.7 0.038 8.3E-07 65.8 9.5 50 386-437 120-169 (598)
247 PRK14952 DNA polymerase III su 95.7 0.055 1.2E-06 64.1 10.7 49 387-437 107-155 (584)
248 PF01695 IstB_IS21: IstB-like 95.7 0.019 4.1E-07 57.6 5.9 117 294-452 44-161 (178)
249 COG1875 NYN ribonuclease and A 95.7 0.046 1E-06 59.1 8.9 58 281-340 227-286 (436)
250 PRK14964 DNA polymerase III su 95.7 0.038 8.2E-07 63.9 9.1 50 386-437 104-153 (491)
251 PRK08116 hypothetical protein; 95.6 0.38 8.3E-06 51.6 16.1 25 298-323 115-139 (268)
252 PRK12323 DNA polymerase III su 95.6 0.068 1.5E-06 63.1 10.8 51 386-438 112-162 (700)
253 PRK14961 DNA polymerase III su 95.6 0.059 1.3E-06 60.7 10.2 50 386-437 107-156 (363)
254 TIGR02640 gas_vesic_GvpN gas v 95.6 0.15 3.2E-06 54.7 12.8 32 286-317 10-41 (262)
255 PRK10919 ATP-dependent DNA hel 95.6 0.038 8.3E-07 67.3 9.2 108 283-409 3-113 (672)
256 PRK08691 DNA polymerase III su 95.6 0.076 1.6E-06 63.3 11.3 44 392-437 113-156 (709)
257 PF13177 DNA_pol3_delta2: DNA 95.6 0.053 1.2E-06 53.5 8.6 54 385-440 89-142 (162)
258 PRK14958 DNA polymerase III su 95.6 0.051 1.1E-06 63.7 9.8 48 388-437 109-156 (509)
259 PRK14951 DNA polymerase III su 95.6 0.034 7.4E-07 66.1 8.4 50 386-437 112-161 (618)
260 PF03354 Terminase_1: Phage Te 95.5 0.042 9.2E-07 64.3 9.1 148 286-440 2-164 (477)
261 PRK14712 conjugal transfer nic 95.5 0.082 1.8E-06 68.7 11.9 124 282-439 835-967 (1623)
262 PRK14957 DNA polymerase III su 95.5 0.067 1.5E-06 62.8 10.3 50 386-437 107-156 (546)
263 TIGR00064 ftsY signal recognit 95.5 0.079 1.7E-06 56.9 10.1 124 297-444 72-206 (272)
264 cd02646 R3H_G-patch R3H domain 95.5 0.033 7.3E-07 44.4 5.4 49 120-169 3-51 (58)
265 TIGR03420 DnaA_homol_Hda DnaA 95.4 0.076 1.6E-06 55.4 9.6 25 296-320 37-61 (226)
266 PRK14960 DNA polymerase III su 95.4 0.067 1.5E-06 63.3 9.7 43 393-437 113-155 (702)
267 TIGR02760 TraI_TIGR conjugativ 95.4 0.1 2.2E-06 70.5 12.7 138 280-439 427-566 (1960)
268 PRK11331 5-methylcytosine-spec 95.4 0.29 6.3E-06 55.7 14.3 32 286-317 183-214 (459)
269 PRK05707 DNA polymerase III su 95.3 0.065 1.4E-06 59.2 9.1 136 282-437 3-143 (328)
270 PRK13709 conjugal transfer nic 95.3 0.13 2.7E-06 67.9 12.9 127 281-439 966-1099(1747)
271 PRK08084 DNA replication initi 95.3 0.039 8.5E-07 58.1 7.0 21 297-317 45-65 (235)
272 PRK08903 DnaA regulatory inact 95.3 0.068 1.5E-06 56.0 8.8 23 296-318 41-63 (227)
273 TIGR01425 SRP54_euk signal rec 95.3 0.08 1.7E-06 60.1 9.7 124 298-441 101-225 (429)
274 COG2804 PulE Type II secretory 95.3 0.053 1.1E-06 61.6 8.1 40 281-320 240-281 (500)
275 PRK10867 signal recognition pa 95.2 0.13 2.8E-06 58.8 11.2 127 298-443 101-228 (433)
276 PRK14969 DNA polymerase III su 95.2 0.084 1.8E-06 62.3 9.9 50 386-437 107-156 (527)
277 PHA03368 DNA packaging termina 95.1 0.29 6.3E-06 57.6 13.6 158 274-450 234-400 (738)
278 TIGR00678 holB DNA polymerase 95.1 0.15 3.2E-06 51.7 10.3 48 387-436 85-132 (188)
279 TIGR01075 uvrD DNA helicase II 95.1 0.065 1.4E-06 66.1 9.1 106 283-409 5-114 (715)
280 PRK12402 replication factor C 95.1 0.093 2E-06 58.5 9.6 31 289-319 26-58 (337)
281 TIGR02760 TraI_TIGR conjugativ 95.1 0.13 2.8E-06 69.6 12.3 122 281-437 1018-1147(1960)
282 PRK00149 dnaA chromosomal repl 95.0 0.11 2.5E-06 60.3 10.4 36 298-336 149-184 (450)
283 TIGR01074 rep ATP-dependent DN 95.0 0.079 1.7E-06 65.0 9.6 108 284-410 3-113 (664)
284 TIGR00362 DnaA chromosomal rep 95.0 0.11 2.4E-06 59.6 10.1 37 298-337 137-173 (405)
285 PRK14962 DNA polymerase III su 95.0 0.15 3.3E-06 59.1 11.2 28 293-320 29-59 (472)
286 PRK12377 putative replication 95.0 0.22 4.8E-06 52.6 11.5 114 297-450 101-215 (248)
287 COG1474 CDC6 Cdc6-related prot 95.0 0.19 4E-06 56.4 11.4 113 299-436 44-160 (366)
288 KOG0989 Replication factor C, 94.9 0.082 1.8E-06 56.0 7.8 120 286-438 40-167 (346)
289 PRK11773 uvrD DNA-dependent he 94.9 0.08 1.7E-06 65.3 9.2 106 283-409 10-119 (721)
290 COG3421 Uncharacterized protei 94.9 0.16 3.4E-06 58.1 10.4 139 302-443 2-168 (812)
291 PRK14959 DNA polymerase III su 94.9 0.13 2.8E-06 61.0 10.2 31 290-320 28-61 (624)
292 COG1444 Predicted P-loop ATPas 94.9 0.097 2.1E-06 62.7 9.2 138 282-441 211-357 (758)
293 TIGR00959 ffh signal recogniti 94.8 0.19 4.2E-06 57.3 11.1 126 298-443 100-227 (428)
294 PRK13833 conjugal transfer pro 94.8 0.062 1.3E-06 58.9 6.8 56 285-343 131-187 (323)
295 cd01120 RecA-like_NTPases RecA 94.8 0.12 2.5E-06 50.4 8.3 24 299-322 1-24 (165)
296 PRK00411 cdc6 cell division co 94.8 0.14 3.1E-06 58.5 10.1 22 298-319 56-77 (394)
297 PRK12901 secA preprotein trans 94.7 0.038 8.3E-07 67.6 5.4 118 281-409 168-301 (1112)
298 PRK14087 dnaA chromosomal repl 94.7 0.17 3.7E-06 58.5 10.5 47 298-348 142-188 (450)
299 PF00004 AAA: ATPase family as 94.6 0.041 8.9E-07 51.7 4.3 19 300-318 1-19 (132)
300 cd02639 R3H_RRM R3H domain of 94.5 0.054 1.2E-06 43.3 4.1 37 133-169 17-53 (60)
301 PRK08939 primosomal protein Dn 94.5 0.51 1.1E-05 51.7 13.2 113 296-449 155-269 (306)
302 TIGR02782 TrbB_P P-type conjug 94.5 0.077 1.7E-06 57.9 6.8 95 288-413 123-217 (299)
303 PRK06921 hypothetical protein; 94.5 0.27 5.8E-06 52.8 10.7 21 296-316 116-136 (266)
304 TIGR02881 spore_V_K stage V sp 94.5 0.24 5.1E-06 53.1 10.4 22 297-318 42-63 (261)
305 PRK08769 DNA polymerase III su 94.4 0.23 5E-06 54.5 10.3 60 378-439 93-152 (319)
306 PRK06645 DNA polymerase III su 94.4 0.13 2.8E-06 60.1 8.6 39 386-426 116-154 (507)
307 PRK14965 DNA polymerase III su 94.3 0.24 5.3E-06 59.2 11.0 50 386-437 107-156 (576)
308 COG3973 Superfamily I DNA and 94.3 0.1 2.2E-06 59.9 7.2 70 286-356 213-285 (747)
309 COG1484 DnaC DNA replication p 94.3 0.31 6.8E-06 51.8 10.6 116 293-451 101-219 (254)
310 TIGR02928 orc1/cdc6 family rep 94.2 0.22 4.8E-06 56.2 10.1 21 298-318 41-61 (365)
311 PRK06964 DNA polymerase III su 94.2 0.18 3.9E-06 55.9 8.9 60 378-439 112-171 (342)
312 cd03115 SRP The signal recogni 94.2 0.2 4.3E-06 50.0 8.4 46 397-443 81-127 (173)
313 PRK07940 DNA polymerase III su 94.1 0.26 5.6E-06 55.9 10.2 51 386-439 105-155 (394)
314 PRK05563 DNA polymerase III su 94.1 0.23 5E-06 59.1 10.3 39 386-426 107-145 (559)
315 COG2256 MGS1 ATPase related to 94.1 0.16 3.5E-06 55.9 8.0 27 292-318 41-69 (436)
316 PRK14088 dnaA chromosomal repl 94.0 0.17 3.7E-06 58.5 8.7 38 298-338 131-168 (440)
317 PRK14955 DNA polymerase III su 94.0 0.3 6.4E-06 55.8 10.6 48 386-435 115-162 (397)
318 PRK05896 DNA polymerase III su 94.0 0.12 2.6E-06 61.0 7.4 51 385-437 106-156 (605)
319 COG0470 HolB ATPase involved i 94.0 0.19 4E-06 55.6 8.7 53 383-437 94-146 (325)
320 PRK13851 type IV secretion sys 94.0 0.062 1.3E-06 59.6 4.8 48 290-343 155-202 (344)
321 PF00308 Bac_DnaA: Bacterial d 94.0 0.33 7.2E-06 50.4 10.0 104 298-441 35-141 (219)
322 PRK14963 DNA polymerase III su 94.0 0.29 6.2E-06 57.4 10.4 48 387-436 105-152 (504)
323 TIGR02785 addA_Gpos recombinat 93.9 0.089 1.9E-06 68.6 6.8 135 284-423 3-140 (1232)
324 TIGR02880 cbbX_cfxQ probable R 93.9 0.39 8.5E-06 52.1 10.8 21 297-317 58-78 (284)
325 KOG1805 DNA replication helica 93.9 0.093 2E-06 63.2 6.2 118 282-409 669-807 (1100)
326 TIGR01073 pcrA ATP-dependent D 93.9 0.12 2.7E-06 63.8 7.7 107 283-409 5-114 (726)
327 PRK12422 chromosomal replicati 93.9 0.16 3.4E-06 58.7 8.0 35 298-337 142-176 (445)
328 PRK08451 DNA polymerase III su 93.7 0.34 7.4E-06 56.8 10.4 43 393-437 112-154 (535)
329 TIGR01547 phage_term_2 phage t 93.7 0.34 7.4E-06 55.4 10.3 134 298-441 2-141 (396)
330 COG4962 CpaF Flp pilus assembl 93.7 0.11 2.5E-06 56.2 5.8 54 285-344 160-214 (355)
331 PRK14953 DNA polymerase III su 93.6 0.55 1.2E-05 54.8 12.0 49 385-435 106-154 (486)
332 PRK06871 DNA polymerase III su 93.6 0.19 4.1E-06 55.2 7.6 53 385-439 94-146 (325)
333 PRK13894 conjugal transfer ATP 93.5 0.11 2.4E-06 57.2 5.5 54 286-342 136-190 (319)
334 COG4626 Phage terminase-like p 93.5 0.64 1.4E-05 53.6 11.7 151 280-439 59-224 (546)
335 PHA02544 44 clamp loader, smal 93.4 0.36 7.8E-06 53.3 9.7 19 299-317 45-63 (316)
336 PLN03025 replication factor C 93.3 0.45 9.7E-06 52.6 10.1 23 298-320 35-57 (319)
337 cd01124 KaiC KaiC is a circadi 93.2 0.11 2.3E-06 52.4 4.7 47 299-351 1-47 (187)
338 CHL00181 cbbX CbbX; Provisiona 93.2 0.6 1.3E-05 50.7 10.6 23 297-319 59-81 (287)
339 PRK14950 DNA polymerase III su 93.2 0.33 7.2E-06 58.3 9.5 48 387-436 109-156 (585)
340 PRK07133 DNA polymerase III su 93.2 0.23 5E-06 59.9 8.0 50 385-436 105-154 (725)
341 PRK13900 type IV secretion sys 93.1 0.12 2.5E-06 57.3 5.1 48 290-343 153-200 (332)
342 PF00437 T2SE: Type II/IV secr 93.0 0.091 2E-06 56.6 4.1 45 293-342 123-167 (270)
343 KOG2373 Predicted mitochondria 93.0 0.037 8E-07 59.0 0.9 34 290-323 266-299 (514)
344 PRK00440 rfc replication facto 93.0 0.81 1.8E-05 50.4 11.6 19 299-317 40-58 (319)
345 KOG0388 SNF2 family DNA-depend 93.0 0.59 1.3E-05 54.5 10.2 114 552-687 1042-1156(1185)
346 PRK13342 recombination factor 93.0 0.48 1E-05 54.4 10.0 19 299-317 38-56 (413)
347 PF05496 RuvB_N: Holliday junc 92.9 0.19 4E-06 51.6 5.8 20 298-317 51-70 (233)
348 PRK14948 DNA polymerase III su 92.9 0.51 1.1E-05 56.8 10.4 48 386-435 109-156 (620)
349 PRK07993 DNA polymerase III su 92.8 0.2 4.3E-06 55.6 6.4 59 378-438 88-146 (334)
350 KOG1132 Helicase of the DEAD s 92.8 0.53 1.2E-05 56.5 10.1 160 540-701 548-738 (945)
351 PRK14086 dnaA chromosomal repl 92.8 0.3 6.5E-06 57.8 8.0 45 298-346 315-359 (617)
352 TIGR00767 rho transcription te 92.7 0.25 5.3E-06 55.3 6.9 28 294-322 165-192 (415)
353 PRK07399 DNA polymerase III su 92.6 0.75 1.6E-05 50.6 10.5 58 378-438 104-161 (314)
354 TIGR02397 dnaX_nterm DNA polym 92.6 0.49 1.1E-05 53.1 9.5 49 385-435 104-152 (355)
355 KOG0391 SNF2 family DNA-depend 92.6 0.46 1E-05 58.3 9.2 121 284-409 617-748 (1958)
356 TIGR03345 VI_ClpV1 type VI sec 92.5 0.61 1.3E-05 58.4 10.7 61 383-449 657-727 (852)
357 PHA00729 NTP-binding motif con 92.5 0.32 7E-06 50.3 6.9 20 299-318 19-38 (226)
358 cd03247 ABCC_cytochrome_bd The 92.4 0.28 6.1E-06 49.1 6.4 23 294-316 25-47 (178)
359 PRK04195 replication factor C 92.4 0.66 1.4E-05 54.4 10.3 23 297-319 39-61 (482)
360 PRK08058 DNA polymerase III su 92.3 0.31 6.7E-06 54.1 7.1 50 386-437 98-147 (329)
361 PRK06620 hypothetical protein; 92.3 0.19 4.2E-06 52.0 5.2 17 298-314 45-61 (214)
362 COG1435 Tdk Thymidine kinase [ 92.3 0.69 1.5E-05 46.2 8.6 124 297-449 4-127 (201)
363 PF01637 Arch_ATPase: Archaeal 92.2 0.21 4.5E-06 52.0 5.4 27 289-315 10-38 (234)
364 PRK14970 DNA polymerase III su 92.2 0.52 1.1E-05 53.3 8.9 28 290-317 29-59 (367)
365 PTZ00293 thymidine kinase; Pro 91.9 0.65 1.4E-05 47.5 8.2 39 296-339 3-41 (211)
366 PRK11823 DNA repair protein Ra 91.9 0.21 4.6E-06 57.7 5.3 88 294-409 77-167 (446)
367 cd01130 VirB11-like_ATPase Typ 91.8 0.17 3.8E-06 51.1 4.1 31 286-316 13-44 (186)
368 PRK09087 hypothetical protein; 91.8 0.65 1.4E-05 48.5 8.4 19 297-315 44-62 (226)
369 PRK06090 DNA polymerase III su 91.7 1.1 2.4E-05 49.2 10.4 60 378-439 88-147 (319)
370 PF05876 Terminase_GpA: Phage 91.7 0.25 5.3E-06 58.8 5.6 68 282-353 16-86 (557)
371 PRK14954 DNA polymerase III su 91.5 0.93 2E-05 54.4 10.3 49 387-437 116-164 (620)
372 cd03221 ABCF_EF-3 ABCF_EF-3 E 91.5 0.61 1.3E-05 44.9 7.3 91 294-424 23-113 (144)
373 PF01443 Viral_helicase1: Vira 91.5 0.11 2.4E-06 54.5 2.3 21 300-320 1-21 (234)
374 PRK08699 DNA polymerase III su 91.5 0.85 1.8E-05 50.4 9.3 56 378-435 93-148 (325)
375 PRK06647 DNA polymerase III su 91.5 1 2.2E-05 53.6 10.5 47 390-439 111-157 (563)
376 KOG2028 ATPase related to the 91.4 0.55 1.2E-05 50.9 7.3 26 293-318 156-183 (554)
377 PRK08533 flagellar accessory p 91.3 0.62 1.3E-05 48.8 7.7 29 294-322 21-49 (230)
378 cd03228 ABCC_MRP_Like The MRP 91.2 0.29 6.4E-06 48.6 4.9 41 395-437 111-151 (171)
379 PF14617 CMS1: U3-containing 9 91.0 0.3 6.6E-06 51.3 4.9 79 330-408 126-211 (252)
380 KOG1131 RNA polymerase II tran 91.0 0.79 1.7E-05 51.8 8.2 33 288-320 26-58 (755)
381 PRK05564 DNA polymerase III su 91.0 1.4 3E-05 48.6 10.4 48 388-437 83-130 (313)
382 PRK06067 flagellar accessory p 90.9 0.41 8.9E-06 50.3 6.0 27 296-322 24-50 (234)
383 cd00267 ABC_ATPase ABC (ATP-bi 90.9 0.19 4.1E-06 49.2 3.2 23 294-316 22-44 (157)
384 cd01122 GP4d_helicase GP4d_hel 90.9 0.66 1.4E-05 49.9 7.7 32 291-322 24-55 (271)
385 cd01393 recA_like RecA is a b 90.6 0.34 7.3E-06 50.6 5.0 28 295-322 17-44 (226)
386 TIGR02788 VirB11 P-type DNA tr 90.5 0.31 6.6E-06 53.6 4.7 45 292-342 139-183 (308)
387 COG0541 Ffh Signal recognition 90.5 1.8 4E-05 48.5 10.5 134 298-450 101-236 (451)
388 KOG1015 Transcription regulato 90.5 1 2.2E-05 54.3 8.9 119 552-685 1140-1277(1567)
389 PRK10865 protein disaggregatio 90.5 1.8 4E-05 54.3 11.9 121 299-450 600-730 (857)
390 PF00931 NB-ARC: NB-ARC domain 90.3 0.56 1.2E-05 50.8 6.5 67 289-357 7-77 (287)
391 PRK13341 recombination factor 90.2 1.4 3E-05 54.0 10.3 19 299-317 54-72 (725)
392 cd03246 ABCC_Protease_Secretio 90.2 0.27 5.8E-06 49.0 3.6 23 294-316 25-47 (173)
393 cd01129 PulE-GspE PulE/GspE Th 90.0 0.5 1.1E-05 50.6 5.7 52 285-341 66-119 (264)
394 PF13555 AAA_29: P-loop contai 90.0 0.25 5.4E-06 39.8 2.5 19 296-314 22-40 (62)
395 COG1110 Reverse gyrase [DNA re 89.9 0.52 1.1E-05 57.6 6.1 69 552-621 123-191 (1187)
396 PRK14971 DNA polymerase III su 89.9 1.6 3.4E-05 52.7 10.3 51 386-439 109-159 (614)
397 COG0552 FtsY Signal recognitio 89.9 2.2 4.7E-05 46.3 10.2 131 298-450 140-281 (340)
398 TIGR00631 uvrb excinuclease AB 89.9 0.61 1.3E-05 56.5 6.9 69 280-356 7-80 (655)
399 cd00544 CobU Adenosylcobinamid 89.7 0.79 1.7E-05 45.5 6.4 82 300-408 2-83 (169)
400 cd01121 Sms Sms (bacterial rad 89.6 1.2 2.6E-05 50.1 8.6 88 294-409 79-169 (372)
401 TIGR02688 conserved hypothetic 89.6 0.47 1E-05 53.4 5.1 26 291-316 203-228 (449)
402 cd03222 ABC_RNaseL_inhibitor T 89.4 0.83 1.8E-05 45.7 6.4 24 293-316 21-44 (177)
403 PRK10917 ATP-dependent DNA hel 89.4 0.77 1.7E-05 56.3 7.3 79 553-634 309-388 (681)
404 KOG2543 Origin recognition com 89.4 1.1 2.3E-05 49.2 7.4 146 280-446 7-164 (438)
405 PF03237 Terminase_6: Terminas 89.4 3.2 7E-05 46.4 12.1 130 301-440 1-137 (384)
406 PRK09376 rho transcription ter 89.3 1.6 3.4E-05 48.9 8.8 29 294-323 166-194 (416)
407 COG2812 DnaX DNA polymerase II 89.1 0.28 6.2E-06 56.8 3.1 51 385-437 106-156 (515)
408 KOG0741 AAA+-type ATPase [Post 89.1 1.4 3E-05 50.2 8.3 106 299-446 540-655 (744)
409 COG2805 PilT Tfp pilus assembl 89.1 0.22 4.8E-06 52.8 2.0 22 297-318 125-146 (353)
410 TIGR00635 ruvB Holliday juncti 89.0 0.93 2E-05 49.7 7.1 20 298-317 31-50 (305)
411 COG0630 VirB11 Type IV secreto 89.0 0.42 9E-06 52.5 4.2 47 290-342 136-182 (312)
412 TIGR02655 circ_KaiC circadian 88.9 0.46 1E-05 55.7 4.8 49 296-350 262-310 (484)
413 cd03238 ABC_UvrA The excision 88.8 0.81 1.8E-05 45.7 5.8 24 294-317 18-41 (176)
414 COG1074 RecB ATP-dependent exo 88.8 0.68 1.5E-05 60.0 6.6 63 294-356 13-75 (1139)
415 cd03216 ABC_Carb_Monos_I This 88.7 0.69 1.5E-05 45.6 5.2 103 294-425 23-126 (163)
416 PRK06305 DNA polymerase III su 88.7 1.7 3.8E-05 50.3 9.2 30 291-320 30-62 (451)
417 TIGR02524 dot_icm_DotB Dot/Icm 88.4 0.39 8.5E-06 53.7 3.6 30 291-321 127-157 (358)
418 cd01128 rho_factor Transcripti 88.4 0.32 6.9E-06 51.5 2.7 21 294-314 13-33 (249)
419 COG0513 SrmB Superfamily II DN 88.4 1.5 3.3E-05 51.8 8.7 88 541-634 84-179 (513)
420 KOG2036 Predicted P-loop ATPas 88.4 2.8 6E-05 49.2 10.2 131 289-441 264-412 (1011)
421 COG3267 ExeA Type II secretory 88.4 4.3 9.4E-05 42.4 10.6 59 291-354 44-103 (269)
422 PF12846 AAA_10: AAA-like doma 88.3 0.5 1.1E-05 51.4 4.4 43 297-344 1-43 (304)
423 TIGR03877 thermo_KaiC_1 KaiC d 88.3 0.49 1.1E-05 49.8 4.1 50 296-351 20-69 (237)
424 cd01131 PilT Pilus retraction 88.2 0.46 9.9E-06 48.6 3.7 37 299-339 3-39 (198)
425 PRK05580 primosome assembly pr 88.2 0.67 1.5E-05 56.6 5.7 74 554-634 190-263 (679)
426 smart00393 R3H Putative single 87.9 1.5 3.3E-05 37.4 6.1 47 122-169 25-71 (79)
427 PRK05986 cob(I)alamin adenolsy 87.8 1.1 2.5E-05 44.9 6.0 40 296-340 21-60 (191)
428 PRK09354 recA recombinase A; P 87.8 1.5 3.2E-05 48.6 7.4 27 296-322 59-85 (349)
429 TIGR02525 plasmid_TraJ plasmid 87.5 0.75 1.6E-05 51.6 5.1 44 296-342 148-191 (372)
430 KOG1596 Fibrillarin and relate 87.5 1.4 3.1E-05 45.0 6.4 13 285-297 136-148 (317)
431 cd03229 ABC_Class3 This class 87.4 0.17 3.7E-06 50.7 -0.1 58 381-439 101-159 (178)
432 PRK03992 proteasome-activating 87.3 1.7 3.7E-05 49.4 7.9 21 297-317 165-185 (389)
433 TIGR00708 cobA cob(I)alamin ad 87.1 1.2 2.6E-05 44.1 5.7 37 299-340 7-43 (173)
434 PF05894 Podovirus_Gp16: Podov 87.1 6.5 0.00014 42.3 11.3 133 296-438 16-159 (333)
435 PRK00080 ruvB Holliday junctio 87.1 0.81 1.8E-05 50.8 5.1 20 298-317 52-71 (328)
436 TIGR01420 pilT_fam pilus retra 87.0 0.8 1.7E-05 51.2 5.0 42 296-341 121-162 (343)
437 TIGR03117 cas_csf4 CRISPR-asso 86.9 2.3 5.1E-05 51.0 9.0 122 552-683 468-615 (636)
438 PF01424 R3H: R3H domain; Int 86.8 1.9 4E-05 34.9 5.8 51 123-174 10-62 (63)
439 PHA00149 DNA encapsidation pro 86.7 6.7 0.00014 41.6 10.9 133 300-440 20-160 (331)
440 TIGR02639 ClpA ATP-dependent C 86.7 4.3 9.3E-05 50.3 11.6 21 297-317 203-223 (731)
441 TIGR03819 heli_sec_ATPase heli 86.6 0.85 1.8E-05 50.7 4.8 101 286-414 166-267 (340)
442 TIGR00595 priA primosomal prot 86.5 0.94 2E-05 53.3 5.4 74 554-634 25-98 (505)
443 KOG0780 Signal recognition par 86.5 5.1 0.00011 44.1 10.3 134 298-450 102-237 (483)
444 cd00561 CobA_CobO_BtuR ATP:cor 86.4 1.4 3E-05 43.2 5.6 35 300-339 5-39 (159)
445 TIGR02868 CydC thiol reductant 86.0 1.9 4.2E-05 51.3 7.9 40 396-436 486-525 (529)
446 PRK13764 ATPase; Provisional 86.0 1.1 2.3E-05 53.4 5.4 43 295-342 255-297 (602)
447 PRK10436 hypothetical protein; 86.0 0.87 1.9E-05 52.7 4.6 33 283-315 202-236 (462)
448 PRK05917 DNA polymerase III su 86.0 6.2 0.00013 42.7 10.8 54 385-440 82-135 (290)
449 PF13207 AAA_17: AAA domain; P 85.9 0.51 1.1E-05 43.7 2.3 19 299-317 1-19 (121)
450 PRK04841 transcriptional regul 85.8 2.4 5.1E-05 54.2 9.0 26 294-319 29-54 (903)
451 KOG0738 AAA+-type ATPase [Post 85.7 0.86 1.9E-05 50.0 4.1 41 270-312 219-260 (491)
452 TIGR03346 chaperone_ClpB ATP-d 85.5 5.8 0.00013 50.1 12.0 59 384-448 657-725 (852)
453 PRK11034 clpA ATP-dependent Cl 85.5 6.5 0.00014 48.6 12.0 145 270-455 175-337 (758)
454 cd03239 ABC_SMC_head The struc 85.4 1.4 3E-05 44.2 5.3 43 396-439 114-157 (178)
455 KOG0347 RNA helicase [RNA proc 85.2 1.4 3E-05 50.3 5.5 56 557-619 266-321 (731)
456 TIGR00643 recG ATP-dependent D 85.2 1.9 4E-05 52.5 7.2 79 553-634 283-362 (630)
457 COG1126 GlnQ ABC-type polar am 85.1 0.39 8.5E-06 48.7 1.1 21 294-314 25-45 (240)
458 KOG2228 Origin recognition com 85.0 23 0.0005 38.7 14.2 130 296-443 48-184 (408)
459 cd03230 ABC_DR_subfamily_A Thi 85.0 0.65 1.4E-05 46.3 2.7 45 381-426 96-140 (173)
460 COG2255 RuvB Holliday junction 85.0 1.8 4E-05 45.7 5.9 24 383-409 91-114 (332)
461 TIGR01243 CDC48 AAA family ATP 84.8 2.3 5E-05 52.8 7.9 21 296-316 211-231 (733)
462 PF06745 KaiC: KaiC; InterPro 84.7 1.1 2.3E-05 46.9 4.3 29 296-324 18-46 (226)
463 TIGR02533 type_II_gspE general 84.5 0.95 2.1E-05 52.9 4.1 36 281-316 224-261 (486)
464 TIGR01243 CDC48 AAA family ATP 84.5 2.5 5.3E-05 52.5 8.0 21 297-317 487-507 (733)
465 TIGR02538 type_IV_pilB type IV 84.4 1 2.2E-05 53.8 4.4 34 281-314 298-333 (564)
466 KOG0701 dsRNA-specific nucleas 84.4 0.65 1.4E-05 60.2 2.8 171 557-749 295-484 (1606)
467 COG3598 RepA RecA-family ATPas 84.1 3.7 7.9E-05 44.2 7.7 120 286-408 77-204 (402)
468 PRK14873 primosome assembly pr 84.1 2 4.4E-05 52.0 6.8 77 553-635 187-263 (665)
469 COG2109 BtuR ATP:corrinoid ade 84.0 6.3 0.00014 39.2 8.8 39 298-341 29-67 (198)
470 TIGR03346 chaperone_ClpB ATP-d 83.9 4.1 9E-05 51.3 9.7 21 297-317 194-214 (852)
471 cd03214 ABC_Iron-Siderophores_ 83.9 1.2 2.7E-05 44.6 4.2 23 294-316 22-44 (180)
472 KOG0331 ATP-dependent RNA heli 83.6 5 0.00011 46.5 9.3 74 554-634 165-244 (519)
473 COG1219 ClpX ATP-dependent pro 83.5 0.48 1E-05 50.6 1.0 17 296-312 96-112 (408)
474 cd03213 ABCG_EPDR ABCG transpo 83.5 1.2 2.6E-05 45.3 4.0 44 395-439 126-169 (194)
475 TIGR02639 ClpA ATP-dependent C 83.4 3.6 7.8E-05 51.0 8.8 19 299-317 486-504 (731)
476 TIGR00580 mfd transcription-re 83.4 2.4 5.2E-05 53.4 7.2 78 554-634 500-578 (926)
477 PF13671 AAA_33: AAA domain; P 83.3 0.76 1.6E-05 43.9 2.3 20 299-318 1-20 (143)
478 PRK05973 replicative DNA helic 83.3 0.99 2.2E-05 47.3 3.3 60 287-352 54-113 (237)
479 TIGR03689 pup_AAA proteasome A 83.3 4.3 9.3E-05 47.5 8.7 18 297-314 216-233 (512)
480 COG0542 clpA ATP-binding subun 83.1 5.2 0.00011 48.7 9.5 120 298-448 522-651 (786)
481 CHL00176 ftsH cell division pr 83.0 4.6 0.0001 48.8 9.2 21 297-317 216-236 (638)
482 cd03223 ABCD_peroxisomal_ALDP 83.0 3.5 7.6E-05 40.7 7.0 23 294-316 24-46 (166)
483 cd03276 ABC_SMC6_euk Eukaryoti 82.9 5.8 0.00013 40.4 8.7 42 396-438 129-173 (198)
484 cd01127 TrwB Bacterial conjuga 82.9 0.74 1.6E-05 52.8 2.4 47 292-343 37-83 (410)
485 cd03227 ABC_Class2 ABC-type Cl 82.8 2.8 6E-05 41.2 6.1 25 297-321 21-45 (162)
486 TIGR02784 addA_alphas double-s 82.8 2.3 5E-05 55.5 7.1 60 294-355 7-66 (1141)
487 PRK05298 excinuclease ABC subu 82.8 2.8 6E-05 51.1 7.3 70 279-356 9-83 (652)
488 PF12775 AAA_7: P-loop contain 82.7 1.2 2.6E-05 47.9 3.7 27 290-316 25-52 (272)
489 COG0593 DnaA ATPase involved i 82.7 4.9 0.00011 45.4 8.6 16 297-312 113-128 (408)
490 TIGR03263 guanyl_kin guanylate 82.7 0.81 1.7E-05 45.8 2.3 21 297-317 1-21 (180)
491 PF13481 AAA_25: AAA domain; P 82.7 2.3 5E-05 42.9 5.7 59 295-354 30-93 (193)
492 TIGR03878 thermo_KaiC_2 KaiC d 82.6 3.2 7E-05 44.3 6.9 27 296-322 35-61 (259)
493 KOG1970 Checkpoint RAD17-RFC c 82.4 1.2 2.6E-05 51.1 3.6 27 296-322 109-135 (634)
494 TIGR03345 VI_ClpV1 type VI sec 82.3 4.7 0.0001 50.6 9.2 126 287-449 192-332 (852)
495 cd01126 TraG_VirD4 The TraG/Tr 82.2 0.84 1.8E-05 51.9 2.5 47 299-352 1-47 (384)
496 PF02534 T4SS-DNA_transf: Type 82.2 1.2 2.6E-05 52.2 3.8 48 298-352 45-92 (469)
497 PRK04328 hypothetical protein; 82.2 2.6 5.7E-05 44.7 6.0 52 296-350 22-73 (249)
498 smart00491 HELICc2 helicase su 82.0 2 4.4E-05 41.2 4.6 116 565-687 2-140 (142)
499 PRK10787 DNA-binding ATP-depen 81.9 4.6 9.9E-05 50.2 8.8 124 283-441 327-473 (784)
500 cd03281 ABC_MSH5_euk MutS5 hom 81.8 0.81 1.8E-05 47.3 1.9 118 297-438 29-151 (213)
No 1
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1e-113 Score=950.32 Aligned_cols=561 Identities=41% Similarity=0.669 Sum_probs=515.6
Q ss_pred HHHHHHhhcCCCchHHHHHHHHHHHhCCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHH
Q 002552 271 GKAMLSFREKLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARV 350 (908)
Q Consensus 271 ~~~~~~~r~~lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv 350 (908)
..++.++|+.|||++++.+++..+.+++++||.|+||||||||+||++++..+.+ .++|.||||||++|+++|+||
T Consensus 40 ~~~i~~qR~~LPI~~~r~~il~~ve~nqvlIviGeTGsGKSTQipQyL~eaG~~~----~g~I~~TQPRRVAavslA~RV 115 (674)
T KOG0922|consen 40 NLSIQEQRESLPIYKYRDQILYAVEDNQVLIVIGETGSGKSTQIPQYLAEAGFAS----SGKIACTQPRRVAAVSLAKRV 115 (674)
T ss_pred ccCHHHhhccCCHHHHHHHHHHHHHHCCEEEEEcCCCCCccccHhHHHHhccccc----CCcEEeecCchHHHHHHHHHH
Confidence 3457788999999999999999999999999999999999999999999998764 345999999999999999999
Q ss_pred HHHhCCCCCCEEeEEeeccccCCCCCcEEEEchHHHHHHHhcCCCCCcceEEEEechhccchhhHHHHHHHHHHCccCCC
Q 002552 351 SSERGENLGETVGYQIRLESKRSAQTRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPD 430 (908)
Q Consensus 351 ~~~~~~~~g~~vg~~~~~~~~~~~~~~Iiv~T~g~Ll~~l~~~~~l~~~~~iIiDEaHeR~~~~d~ll~~lk~~~~~~~~ 430 (908)
+.|++..+|..|||++|+++..+..|+|.|+|+|+|||.+..||.|++|++|||||||||++.+|+++++||.+++++++
T Consensus 116 AeE~~~~lG~~VGY~IRFed~ts~~TrikymTDG~LLRE~l~Dp~LskYsvIIlDEAHERsl~TDiLlGlLKki~~~R~~ 195 (674)
T KOG0922|consen 116 AEEMGCQLGEEVGYTIRFEDSTSKDTRIKYMTDGMLLREILKDPLLSKYSVIILDEAHERSLHTDILLGLLKKILKKRPD 195 (674)
T ss_pred HHHhCCCcCceeeeEEEecccCCCceeEEEecchHHHHHHhcCCccccccEEEEechhhhhhHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEecccCChHHHHhhhCCCCccccCCccccceeeehhhHHHhhhcccCcccccccccccccccccchhhhHhhhhhc
Q 002552 431 LRLILMSATINADLFSKYFGNAPTVHIPGLTFPVTDLFLEDVLEKTRYKMNSKLDSFQGNSRRSRRQDSKKDHLTALFED 510 (908)
Q Consensus 431 ~qiIlmSAT~~~~~~~~~f~~~~~i~v~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (908)
+|+|+||||+|++.|++||++++++.|+||.|||++.|+... ..|++..
T Consensus 196 LklIimSATlda~kfS~yF~~a~i~~i~GR~fPVei~y~~~p---------------------------~~dYv~a---- 244 (674)
T KOG0922|consen 196 LKLIIMSATLDAEKFSEYFNNAPILTIPGRTFPVEILYLKEP---------------------------TADYVDA---- 244 (674)
T ss_pred ceEEEEeeeecHHHHHHHhcCCceEeecCCCCceeEEeccCC---------------------------chhhHHH----
Confidence 999999999999999999999999999999999999997521 0111111
Q ss_pred ccccccccchhhhhHhhHhhhhhhhhchHHHHHHHHHHHhccCCCcEEEecCCHHHHHHHHHHHHhcc-cCCCCCceEEE
Q 002552 511 VDIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICRHEGDGAILVFLTGWNDISKLLDQIKVNK-FLGDPNKFLVL 589 (908)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~-~~~~~~~~~v~ 589 (908)
....+..|+.++++|+||||+++.++|+.+++.|.+.. .........++
T Consensus 245 ------------------------------~~~tv~~Ih~~E~~GDILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~l 294 (674)
T KOG0922|consen 245 ------------------------------ALITVIQIHLTEPPGDILVFLTGQEEIEAACELLRERAKSLPEDCPELIL 294 (674)
T ss_pred ------------------------------HHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhccccCcceee
Confidence 23456678888999999999999999999999998631 11111223789
Q ss_pred eccCCCChHhHHhhhCCCCCCCcEEEEeccccccccCCCCeEEEEeCCCccceeeccccCccccccccccHhhHHHhccc
Q 002552 590 PLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETSYDALNKLACLLPSWISKASAHQRRGR 669 (908)
Q Consensus 590 ~lH~~l~~~er~~v~~~f~~g~~kIlvaT~iae~GidIp~v~~VId~g~~k~~~yd~~~~~~~l~~~~iS~~~~~QR~GR 669 (908)
++||.|+.++|.+||+..+.|.+|||+||||||++||||+|.||||+|+.|.+.||+.+++++|...|||++++.||+||
T Consensus 295 ply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGR 374 (674)
T KOG0922|consen 295 PLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGR 374 (674)
T ss_pred eecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEeeccccCccceeEEechHHHHhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcEEEEecChhhHhhcCCCCCCccccCchHHHHHHHhhcCCCchhhhhhccCCCCCHHHHHHHHHHHHHcCCCCC
Q 002552 670 AGRVQPGVCYKLYPRIIHDAMLPYQLPEILRTPLQELCLHIKSLQLGTVGSFLSKALQPPDPLAVQNAIELLKTIGALDD 749 (908)
Q Consensus 670 aGR~~~G~~~~l~~~~~~~~l~~~~~pei~r~~L~~~~L~~~~l~~~~~~~fl~~~~~~p~~~~v~~al~~L~~~gal~~ 749 (908)
|||++||+|||||++++|+.|++.++|||+|++|..++|++|+++++++..| +|+|||+.+++..|++.|..+||||+
T Consensus 375 AGRt~pGkcyRLYte~~~~~~~~~~~PEI~R~~Ls~~vL~Lkalgi~d~l~F--~f~d~P~~~~l~~AL~~L~~lgald~ 452 (674)
T KOG0922|consen 375 AGRTGPGKCYRLYTESAYDKMPLQTVPEIQRVNLSSAVLQLKALGINDPLRF--PFIDPPPPEALEEALEELYSLGALDD 452 (674)
T ss_pred CCCCCCceEEEeeeHHHHhhcccCCCCceeeechHHHHHHHHhcCCCCcccC--CCCCCCChHHHHHHHHHHHhcCcccC
Confidence 9999999999999999999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred CCCcCc-cccccccccCCchhhHHHHHhhhccChHHHHHHHhhhccCCCCCCccccHHH-HHHHHHhhcCCCCCcHHHHH
Q 002552 750 MENLTP-LGRHLCTLPVDPNIGKMLLMGAIFQCLNPALTIAAALAHRNPFVLPVNMQKE-VDEAKRSFAGDSCSDHIALL 827 (908)
Q Consensus 750 ~~~lT~-lG~~~~~lpl~p~~~k~l~~~~~~~c~~~~l~i~a~l~~~~~f~~p~~~~~~-~~~~~~~~~~~~~sD~l~~l 827 (908)
++.||. +|+.|+.||++|.++|||+.+..++|++++++|||+|++.++|..|.+.+.+ ++..|.+|+ +..+||+++|
T Consensus 453 ~g~lt~p~G~~ma~~Pl~p~lsk~ll~s~~~gc~~e~l~i~a~Lsv~~~f~~p~~~~~~~a~~~~~kf~-~~eGDh~tlL 531 (674)
T KOG0922|consen 453 RGKLTSPLGRQMAELPLEPHLSKMLLKSSELGCSEEILTIAAMLSVQSVFSRPKDKKAEDADRKRAKFA-NPEGDHLTLL 531 (674)
T ss_pred cCCcCchHHhhhhhcCCCcchhhhhhhccccCCcchhhhheeeeeccceecCccchhhhhhhHHHHhhc-CcccCHHHHH
Confidence 999998 9999999999999999999999999999999999999999999999988777 888999998 5678999999
Q ss_pred HHHHHHHHHHcCCcHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCCccchhhhhcccCCCChhhh
Q 002552 828 KAFDGYKDAKRNRRERDFCWENFLSPITLQMMEDMRSQFLDLLSDIGFVDKSKGPSVRSYIFYYYRKLSIPSPLL 902 (908)
Q Consensus 828 ~~f~~w~~~~~~~~~~~~c~~~~l~~~~l~~~~~~r~ql~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 902 (908)
++|+.|.+ ++..++||++|||+.+.|+.+.++|+||..++.+.++...+++.+.....-+...+++-|.|.+
T Consensus 532 ~vy~~~~~---~~~~~~wC~en~i~~r~l~~a~~ir~QL~~i~~~~~~~~~s~~~d~~~i~k~l~aGff~N~A~~ 603 (674)
T KOG0922|consen 532 NVYESWKE---NGTSKKWCKENFINARSLKRAKDIRKQLRRILDKFGLPVSSCGGDMEKIRKCLCAGFFRNVAER 603 (674)
T ss_pred HHHHHHHh---cCChhhHHHHhcccHHHHHHHHHHHHHHHHHHHHcCCCccCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 99999998 5667899999999999999999999999999999999998887776555555555555555443
No 2
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=100.00 E-value=1.4e-113 Score=1000.97 Aligned_cols=587 Identities=61% Similarity=0.993 Sum_probs=546.4
Q ss_pred HHHHhccChhHHHHHHhhcCCCchHHHHHHHHHHHhCCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccH
Q 002552 261 RQEKLKSSDSGKAMLSFREKLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRR 340 (908)
Q Consensus 261 ~~~~~~~~~~~~~~~~~r~~lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r 340 (908)
.+.....+..++++++.|..||+|.++++++.++.++++++|+|+||||||||+||+||+..+.++ +.|+|+||||||
T Consensus 152 ~~~~~~~s~~~~~~~~~R~~LPa~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~--~~~~IicTQPRR 229 (924)
T KOG0920|consen 152 RQSEPKKSESYKEMLRFRESLPAYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESG--AACNIICTQPRR 229 (924)
T ss_pred hhchhhhhhHHHHHHHHHHhCccHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcC--CCCeEEecCCch
Confidence 455567788999999999999999999999999999999999999999999999999999988765 788999999999
Q ss_pred HHHHHHHHHHHHHhCCCCCCEEeEEeeccccCCCCCcEEEEchHHHHHHHhcCCCCCcceEEEEechhccchhhHHHHHH
Q 002552 341 ISAISVAARVSSERGENLGETVGYQIRLESKRSAQTRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLII 420 (908)
Q Consensus 341 ~la~qi~~rv~~~~~~~~g~~vg~~~~~~~~~~~~~~Iiv~T~g~Ll~~l~~~~~l~~~~~iIiDEaHeR~~~~d~ll~~ 420 (908)
+.|+++|+||++|+++..|..|||++|.++..+..+.++|||+|+||+.|..++.+.+++|||+||+|||++++||++.+
T Consensus 230 IsAIsvAeRVa~ER~~~~g~~VGYqvrl~~~~s~~t~L~fcTtGvLLr~L~~~~~l~~vthiivDEVHER~i~~DflLi~ 309 (924)
T KOG0920|consen 230 ISAISVAERVAKERGESLGEEVGYQVRLESKRSRETRLLFCTTGVLLRRLQSDPTLSGVTHIIVDEVHERSINTDFLLIL 309 (924)
T ss_pred HHHHHHHHHHHHHhccccCCeeeEEEeeecccCCceeEEEecHHHHHHHhccCcccccCceeeeeeEEEccCCcccHHHH
Confidence 99999999999999999999999999999999989999999999999999999999999999999999999999999999
Q ss_pred HHHHCccCCCCcEEEecccCChHHHHhhhCCCCccccCCccccceeeehhhHHHhhhcccCcccccccccccccccccch
Q 002552 421 LRDLLPRRPDLRLILMSATINADLFSKYFGNAPTVHIPGLTFPVTDLFLEDVLEKTRYKMNSKLDSFQGNSRRSRRQDSK 500 (908)
Q Consensus 421 lk~~~~~~~~~qiIlmSAT~~~~~~~~~f~~~~~i~v~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (908)
+|.++..+|++|+|+||||+|++.|++||+++|+++|+|++|||.++|++|++..+.|........ .. . +
T Consensus 310 lk~lL~~~p~LkvILMSAT~dae~fs~YF~~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~-~~-~--------~ 379 (924)
T KOG0920|consen 310 LKDLLPRNPDLKVILMSATLDAELFSDYFGGCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSAR-SG-P--------E 379 (924)
T ss_pred HHHHhhhCCCceEEEeeeecchHHHHHHhCCCceEeecCCCcchHHHHHHHHHHHhcccccccccc-cc-c--------c
Confidence 999999999999999999999999999999999999999999999999999999987765432221 00 0 0
Q ss_pred hhhHhhhhhcccccccccchhhhhHhhHhhhhhhhhchHHHHHHHHHHHhccCCCcEEEecCCHHHHHHHHHHHHhcccC
Q 002552 501 KDHLTALFEDVDIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICRHEGDGAILVFLTGWNDISKLLDQIKVNKFL 580 (908)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~ 580 (908)
.. .. ....+..|.. .+|++++..++.+|+.....|.||||+||+.+|..+.+.|..+...
T Consensus 380 ~~---~~----------------~~~~~~~~~~-~id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f 439 (924)
T KOG0920|consen 380 RS---QL----------------RLARLKLWEP-EIDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPF 439 (924)
T ss_pred cC---cc----------------ccccchhccc-cccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhcccc
Confidence 00 00 0000222222 3889999999999999888999999999999999999999877666
Q ss_pred CCCCceEEEeccCCCChHhHHhhhCCCCCCCcEEEEeccccccccCCCCeEEEEeCCCccceeeccccCccccccccccH
Q 002552 581 GDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETSYDALNKLACLLPSWISK 660 (908)
Q Consensus 581 ~~~~~~~v~~lH~~l~~~er~~v~~~f~~g~~kIlvaT~iae~GidIp~v~~VId~g~~k~~~yd~~~~~~~l~~~~iS~ 660 (908)
....++.|.++|+.|+.++|+.||...+.|.+|||+||||||++||||||.||||+|+.|++.||+.++++++...|+|+
T Consensus 440 ~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSk 519 (924)
T KOG0920|consen 440 ADSLKFAILPLHSSIPSEEQQAVFKRPPKGTRKIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSK 519 (924)
T ss_pred ccccceEEEeccccCChHHHHHhcCCCCCCcchhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccc
Confidence 66578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHhccccCCCCCcEEEEecChhhHhhcCC-CCCCccccCchHHHHHHHhhcCCCchhhhhhccCCCCCHHHHHHHHH
Q 002552 661 ASAHQRRGRAGRVQPGVCYKLYPRIIHDAMLP-YQLPEILRTPLQELCLHIKSLQLGTVGSFLSKALQPPDPLAVQNAIE 739 (908)
Q Consensus 661 ~~~~QR~GRaGR~~~G~~~~l~~~~~~~~l~~-~~~pei~r~~L~~~~L~~~~l~~~~~~~fl~~~~~~p~~~~v~~al~ 739 (908)
+++.||+|||||+++|+||+||++..|+.+.. +++|||+|.+|+++||++|.++.+++..||+.+++||+..++..|+.
T Consensus 520 Ana~QR~GRAGRv~~G~cy~L~~~~~~~~~~~~~q~PEilR~pL~~l~L~iK~l~~~~~~~fLskaldpP~~~~v~~a~~ 599 (924)
T KOG0920|consen 520 ANAKQRRGRAGRVRPGICYHLYTRSRYEKLMLAYQLPEILRTPLEELCLHIKVLEQGSIKAFLSKALDPPPADAVDLAIE 599 (924)
T ss_pred cchHHhcccccCccCCeeEEeechhhhhhcccccCChHHHhChHHHhhheeeeccCCCHHHHHHHhcCCCChHHHHHHHH
Confidence 99999999999999999999999999998777 99999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCCCCcCccccccccccCCchhhHHHHHhhhccChHHHHHHHhhhccCCCCCCccccHHHHHHHHHhhcCCC
Q 002552 740 LLKTIGALDDMENLTPLGRHLCTLPVDPNIGKMLLMGAIFQCLNPALTIAAALAHRNPFVLPVNMQKEVDEAKRSFAGDS 819 (908)
Q Consensus 740 ~L~~~gal~~~~~lT~lG~~~~~lpl~p~~~k~l~~~~~~~c~~~~l~i~a~l~~~~~f~~p~~~~~~~~~~~~~~~~~~ 819 (908)
.|..+|||+.+++||+||++++.||+||++|||+++|+.|+|+||+++|||+|+.++||+.|.++++.+++++..|+.+.
T Consensus 600 ~L~~igaL~~~e~LT~LG~~la~lPvd~~igK~ll~g~if~cLdp~l~iaa~Ls~k~PF~~~~~~~~~~~~~~~~~~~~~ 679 (924)
T KOG0920|consen 600 RLKQIGALDESEELTPLGLHLASLPVDVRIGKLLLFGAIFGCLDPALTIAAALSFKSPFVSPLGKREEADKAKKLLALDS 679 (924)
T ss_pred HHHHhccccCcccchHHHHHHHhCCCccccchhheehhhccccchhhhHHHHhccCCCcccCCCchhHHHHHHHHhccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred CCcHHHHHHHHHHHHHHHcC--CcHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhCCCCcCC
Q 002552 820 CSDHIALLKAFDGYKDAKRN--RRERDFCWENFLSPITLQMMEDMRSQFLDLLSDIGFVDKS 879 (908)
Q Consensus 820 ~sD~l~~l~~f~~w~~~~~~--~~~~~~c~~~~l~~~~l~~~~~~r~ql~~~l~~~~~~~~~ 879 (908)
.|||||++++|+.|.....+ ..+.+||++|||+..+|+++..+|.||.+.|.++||+..+
T Consensus 680 ~SD~la~~~ay~~w~~~~~~~~~~~~~fc~~~fLs~~~l~~i~~l~~q~~~~l~~~g~~~~~ 741 (924)
T KOG0920|consen 680 ISDHLAVVRAYAGWREILRSGPSAEKDFCEENFLSSNTLQEISSLRVQFLELLSDIGLIPIS 741 (924)
T ss_pred cchHHHHHHHHHHHHHHHhccchHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhcccccCC
Confidence 89999999999999999876 4678999999999999999999999999999999999865
No 3
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.9e-112 Score=924.94 Aligned_cols=564 Identities=38% Similarity=0.626 Sum_probs=515.1
Q ss_pred hHHHHHHhhcCCCchHHHHHHHHHHHhCCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHH
Q 002552 270 SGKAMLSFREKLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAAR 349 (908)
Q Consensus 270 ~~~~~~~~r~~lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~r 349 (908)
....+.+.|+.||||+++++++.++..++++||.|+||||||||+|||+.+..+... +.+|-||||||++|.++|.|
T Consensus 253 ~~~~iee~RksLPVy~ykdell~av~e~QVLiI~GeTGSGKTTQiPQyL~EaGytk~---gk~IgcTQPRRVAAmSVAaR 329 (902)
T KOG0923|consen 253 RRESIEEVRKSLPVYPYKDELLKAVKEHQVLIIVGETGSGKTTQIPQYLYEAGYTKG---GKKIGCTQPRRVAAMSVAAR 329 (902)
T ss_pred HHHHHHHHHhcCCchhhHHHHHHHHHhCcEEEEEcCCCCCccccccHHHHhcccccC---CceEeecCcchHHHHHHHHH
Confidence 345688899999999999999999999999999999999999999999999988642 34599999999999999999
Q ss_pred HHHHhCCCCCCEEeEEeeccccCCCCCcEEEEchHHHHHHHhcCCCCCcceEEEEechhccchhhHHHHHHHHHHCccCC
Q 002552 350 VSSERGENLGETVGYQIRLESKRSAQTRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRP 429 (908)
Q Consensus 350 v~~~~~~~~g~~vg~~~~~~~~~~~~~~Iiv~T~g~Ll~~l~~~~~l~~~~~iIiDEaHeR~~~~d~ll~~lk~~~~~~~ 429 (908)
|++|++..+|..|||++|++++++.+|.|.|||+|+|++.+..+|.|..|++|||||||||++.+|+|.+++|.+.+.+|
T Consensus 330 VA~EMgvkLG~eVGYsIRFEdcTSekTvlKYMTDGmLlREfL~epdLasYSViiiDEAHERTL~TDILfgLvKDIar~Rp 409 (902)
T KOG0923|consen 330 VAEEMGVKLGHEVGYSIRFEDCTSEKTVLKYMTDGMLLREFLSEPDLASYSVIIVDEAHERTLHTDILFGLVKDIARFRP 409 (902)
T ss_pred HHHHhCcccccccceEEEeccccCcceeeeeecchhHHHHHhccccccceeEEEeehhhhhhhhhhHHHHHHHHHHhhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEecccCChHHHHhhhCCCCccccCCccccceeeehhhHHHhhhcccCcccccccccccccccccchhhhHhhhhh
Q 002552 430 DLRLILMSATINADLFSKYFGNAPTVHIPGLTFPVTDLFLEDVLEKTRYKMNSKLDSFQGNSRRSRRQDSKKDHLTALFE 509 (908)
Q Consensus 430 ~~qiIlmSAT~~~~~~~~~f~~~~~i~v~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (908)
++|++++|||+|++.|+.||+++|++.+|||.|||.++|.... ..|++..
T Consensus 410 dLKllIsSAT~DAekFS~fFDdapIF~iPGRRyPVdi~Yt~~P---------------------------EAdYldA--- 459 (902)
T KOG0923|consen 410 DLKLLISSATMDAEKFSAFFDDAPIFRIPGRRYPVDIFYTKAP---------------------------EADYLDA--- 459 (902)
T ss_pred cceEEeeccccCHHHHHHhccCCcEEeccCcccceeeecccCC---------------------------chhHHHH---
Confidence 9999999999999999999999999999999999999996421 1111111
Q ss_pred cccccccccchhhhhHhhHhhhhhhhhchHHHHHHHHHHHhccCCCcEEEecCCHHHHHHHHHHHHhc--ccCCCCCceE
Q 002552 510 DVDIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICRHEGDGAILVFLTGWNDISKLLDQIKVN--KFLGDPNKFL 587 (908)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~~~~g~iLVF~~~~~~i~~l~~~L~~~--~~~~~~~~~~ 587 (908)
....+..|+.+.+.|+||||+++.++|+.+.+.|.+. .+-.....+-
T Consensus 460 -------------------------------ai~tVlqIH~tqp~GDILVFltGQeEIEt~~e~l~~~~~~LGski~eli 508 (902)
T KOG0923|consen 460 -------------------------------AIVTVLQIHLTQPLGDILVFLTGQEEIETVKENLKERCRRLGSKIRELI 508 (902)
T ss_pred -------------------------------HHhhheeeEeccCCccEEEEeccHHHHHHHHHHHHHHHHHhccccceEE
Confidence 1223445666778899999999999999988887642 1222235688
Q ss_pred EEeccCCCChHhHHhhhCCCCCCCcEEEEeccccccccCCCCeEEEEeCCCccceeeccccCccccccccccHhhHHHhc
Q 002552 588 VLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETSYDALNKLACLLPSWISKASAHQRR 667 (908)
Q Consensus 588 v~~lH~~l~~~er~~v~~~f~~g~~kIlvaT~iae~GidIp~v~~VId~g~~k~~~yd~~~~~~~l~~~~iS~~~~~QR~ 667 (908)
|+|+|++||.+.|.+||++.++|.+|||+||||||++|||++|.||||.|+.|+..|+|.+||++|.+++||++++.||+
T Consensus 509 v~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~K~nsynprtGmesL~v~piSKAsA~QRa 588 (902)
T KOG0923|consen 509 VLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGFVKQNSYNPRTGMESLLVTPISKASANQRA 588 (902)
T ss_pred EeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCccccccCcCCCcCceeEEEeeechhhhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCcEEEEecChhhHh-hcCCCCCCccccCchHHHHHHHhhcCCCchhhhhhccCCCCCHHHHHHHHHHHHHcCC
Q 002552 668 GRAGRVQPGVCYKLYPRIIHD-AMLPYQLPEILRTPLQELCLHIKSLQLGTVGSFLSKALQPPDPLAVQNAIELLKTIGA 746 (908)
Q Consensus 668 GRaGR~~~G~~~~l~~~~~~~-~l~~~~~pei~r~~L~~~~L~~~~l~~~~~~~fl~~~~~~p~~~~v~~al~~L~~~ga 746 (908)
|||||++||+|||||+...|. .+...++|||+|++|.+++|.+|+||+.++.+| +|+|||+.+++..||+.|+.+||
T Consensus 589 GRAGRtgPGKCfRLYt~~aY~~eLE~~t~PEIqRtnL~nvVL~LkSLGI~Dl~~F--dFmDpPp~etL~~aLE~LyaLGA 666 (902)
T KOG0923|consen 589 GRAGRTGPGKCFRLYTAWAYEHELEEMTVPEIQRTNLGNVVLLLKSLGIHDLIHF--DFLDPPPTETLLKALEQLYALGA 666 (902)
T ss_pred cccCCCCCCceEEeechhhhhhhhccCCCcceeeccchhHHHHHHhcCcchhccc--ccCCCCChHHHHHHHHHHHHhhc
Confidence 999999999999999998885 588888999999999999999999999999999 99999999999999999999999
Q ss_pred CCCCCCcCccccccccccCCchhhHHHHHhhhccChHHHHHHHhhhccC-CCCCCccccHHHHHHHHHhhcCCCCCcHHH
Q 002552 747 LDDMENLTPLGRHLCTLPVDPNIGKMLLMGAIFQCLNPALTIAAALAHR-NPFVLPVNMQKEVDEAKRSFAGDSCSDHIA 825 (908)
Q Consensus 747 l~~~~~lT~lG~~~~~lpl~p~~~k~l~~~~~~~c~~~~l~i~a~l~~~-~~f~~p~~~~~~~~~~~~~~~~~~~sD~l~ 825 (908)
|+..++||.+|+.|++||+||+++|||+.+..++|.+++++|||||++. ++|..|.+....++.+++.|.. ..|||++
T Consensus 667 Ln~~GeLTk~GrrMaEfP~dPmlsKmi~as~ky~cs~EiitiaamlS~~~svfyrpk~~~v~ad~a~~~f~~-~~gDhi~ 745 (902)
T KOG0923|consen 667 LNHLGELTKLGRRMAEFPVDPMLSKMIVASEKYKCSEEIITIAAMLSVGASVFYRPKDKQVHADNARKNFEE-PVGDHIV 745 (902)
T ss_pred cccccchhhhhhhhhhcCCCHHHHhHHhhhccccchHHHHHHHHHHhcCchheecchhhhhhhhhhhhccCC-CCcchhh
Confidence 9999999999999999999999999999999999999999999999976 6899998888889999988884 5899999
Q ss_pred HHHHHHHHHHHHcCCcHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCCccchhhhhcccCCCChhhhh
Q 002552 826 LLKAFDGYKDAKRNRRERDFCWENFLSPITLQMMEDMRSQFLDLLSDIGFVDKSKGPSVRSYIFYYYRKLSIPSPLLS 903 (908)
Q Consensus 826 ~l~~f~~w~~~~~~~~~~~~c~~~~l~~~~l~~~~~~r~ql~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 903 (908)
+|++|+.|.. .+...+||.+|++.+.+|..+.++|.||..+|.+.+....++.......-.+.++|++.|.+.+.
T Consensus 746 ~L~vyn~w~e---s~~s~~wC~e~~iq~~sm~rardir~qL~gll~~v~~~~~s~~~~~~~irk~i~aGff~h~a~l~ 820 (902)
T KOG0923|consen 746 LLNVYNQWKE---SKYSTQWCYENFIQYRSMKRARDIRDQLEGLLERVEIDLSSNQNDLDKIRKAITAGFFYHTAKLS 820 (902)
T ss_pred hhHHHHHHhh---cchhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhccccccCChHHHHHHHHHHhccccccceecc
Confidence 9999999997 45668999999999999999999999999999999988877665444445677788888887765
No 4
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.1e-110 Score=904.75 Aligned_cols=556 Identities=38% Similarity=0.612 Sum_probs=506.8
Q ss_pred HHHHHhhcCCCchHHHHHHHHHHHhCCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHH
Q 002552 272 KAMLSFREKLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVS 351 (908)
Q Consensus 272 ~~~~~~r~~lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~ 351 (908)
+.+.++|+.||++..+.+++..|..|+++||+|+||||||||++||+++..+.. .+.|.||||||++|+++|+||+
T Consensus 346 k~i~eqrq~LPvf~~R~~ll~~ir~n~vvvivgETGSGKTTQl~QyL~edGY~~----~GmIGcTQPRRvAAiSVAkrVa 421 (1042)
T KOG0924|consen 346 KSIREQRQYLPVFACRDQLLSVIRENQVVVIVGETGSGKTTQLAQYLYEDGYAD----NGMIGCTQPRRVAAISVAKRVA 421 (1042)
T ss_pred chHHHHHhhcchHHHHHHHHHHHhhCcEEEEEecCCCCchhhhHHHHHhccccc----CCeeeecCchHHHHHHHHHHHH
Confidence 347789999999999999999999999999999999999999999999987753 4589999999999999999999
Q ss_pred HHhCCCCCCEEeEEeeccccCCCCCcEEEEchHHHHHHHhcCCCCCcceEEEEechhccchhhHHHHHHHHHHCccCCCC
Q 002552 352 SERGENLGETVGYQIRLESKRSAQTRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDL 431 (908)
Q Consensus 352 ~~~~~~~g~~vg~~~~~~~~~~~~~~Iiv~T~g~Ll~~l~~~~~l~~~~~iIiDEaHeR~~~~d~ll~~lk~~~~~~~~~ 431 (908)
.|++..+|..|||.+|+++..++.|.|.|+|.|+||+....+..|.+|++||+||||||++++|++.+++|.++..+.++
T Consensus 422 ~EM~~~lG~~VGYsIRFEdvT~~~T~IkymTDGiLLrEsL~d~~L~kYSviImDEAHERslNtDilfGllk~~larRrdl 501 (1042)
T KOG0924|consen 422 EEMGVTLGDTVGYSIRFEDVTSEDTKIKYMTDGILLRESLKDRDLDKYSVIIMDEAHERSLNTDILFGLLKKVLARRRDL 501 (1042)
T ss_pred HHhCCccccccceEEEeeecCCCceeEEEeccchHHHHHhhhhhhhheeEEEechhhhcccchHHHHHHHHHHHHhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEecccCChHHHHhhhCCCCccccCCccccceeeehhhHHHhhhcccCcccccccccccccccccchhhhHhhhhhcc
Q 002552 432 RLILMSATINADLFSKYFGNAPTVHIPGLTFPVTDLFLEDVLEKTRYKMNSKLDSFQGNSRRSRRQDSKKDHLTALFEDV 511 (908)
Q Consensus 432 qiIlmSAT~~~~~~~~~f~~~~~i~v~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (908)
|+|++|||++++.|.+||++||.+.|+||+|||++.|.....+ |
T Consensus 502 KliVtSATm~a~kf~nfFgn~p~f~IpGRTyPV~~~~~k~p~e---------------------------D--------- 545 (1042)
T KOG0924|consen 502 KLIVTSATMDAQKFSNFFGNCPQFTIPGRTYPVEIMYTKTPVE---------------------------D--------- 545 (1042)
T ss_pred eEEEeeccccHHHHHHHhCCCceeeecCCccceEEEeccCchH---------------------------H---------
Confidence 9999999999999999999999999999999999998643211 1
Q ss_pred cccccccchhhhhHhhHhhhhhhhhchHHHHHHHH---HHHhccCCCcEEEecCCHHHHHHHHHHHHhcc---cCCCCCc
Q 002552 512 DIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIE---YICRHEGDGAILVFLTGWNDISKLLDQIKVNK---FLGDPNK 585 (908)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~---~i~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~---~~~~~~~ 585 (908)
.+..++. .|+.....|+||||+++.++|+..+..|...- ..+....
T Consensus 546 ----------------------------YVeaavkq~v~Ihl~~~~GdilIfmtGqediE~t~~~i~~~l~ql~~~~~~~ 597 (1042)
T KOG0924|consen 546 ----------------------------YVEAAVKQAVQIHLSGPPGDILIFMTGQEDIECTCDIIKEKLEQLDSAPTTD 597 (1042)
T ss_pred ----------------------------HHHHHHhhheEeeccCCCCCEEEecCCCcchhHHHHHHHHHHHhhhcCCCCc
Confidence 1223332 34445678999999999999998877776421 1122247
Q ss_pred eEEEeccCCCChHhHHhhhCCCCCCCcEEEEeccccccccCCCCeEEEEeCCCccceeeccccCccccccccccHhhHHH
Q 002552 586 FLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETSYDALNKLACLLPSWISKASAHQ 665 (908)
Q Consensus 586 ~~v~~lH~~l~~~er~~v~~~f~~g~~kIlvaT~iae~GidIp~v~~VId~g~~k~~~yd~~~~~~~l~~~~iS~~~~~Q 665 (908)
+.|+++|+.||..-|.++|+....|.+||||||||||++||||+|.||||+|+.|.+.|++..|+..|+.++||+|++.|
T Consensus 598 L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~Q 677 (1042)
T KOG0924|consen 598 LAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQANADQ 677 (1042)
T ss_pred eEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCceeeeecccccccceeEEEechhccchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccCCCCCcEEEEecChhhH-hhcCCCCCCccccCchHHHHHHHhhcCCCchhhhhhccCCCCCHHHHHHHHHHHHHc
Q 002552 666 RRGRAGRVQPGVCYKLYPRIIH-DAMLPYQLPEILRTPLQELCLHIKSLQLGTVGSFLSKALQPPDPLAVQNAIELLKTI 744 (908)
Q Consensus 666 R~GRaGR~~~G~~~~l~~~~~~-~~l~~~~~pei~r~~L~~~~L~~~~l~~~~~~~fl~~~~~~p~~~~v~~al~~L~~~ 744 (908)
|+|||||++||.||+|||+..| +.|.+.++|||+|++|.+++|.+|+|++.++..| +|+|||+.+.+..|+-.|..+
T Consensus 678 RaGRAGRt~pG~cYRlYTe~ay~~eml~stvPEIqRTNl~nvVLlLkslgV~dll~F--dFmD~Pped~~~~sly~Lw~L 755 (1042)
T KOG0924|consen 678 RAGRAGRTGPGTCYRLYTEDAYKNEMLPSTVPEIQRTNLSNVVLLLKSLGVDDLLKF--DFMDPPPEDNLLNSLYQLWTL 755 (1042)
T ss_pred hccccCCCCCcceeeehhhhHHHhhcccCCCchhhhcchhhHHHHHHhcChhhhhCC--CcCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999877 6799999999999999999999999999999999 999999999999999999999
Q ss_pred CCCCCCCCcCccccccccccCCchhhHHHHHhhhccChHHHHHHHhhhccCCCCCCccccHHHHHHHHHhhcCCCCCcHH
Q 002552 745 GALDDMENLTPLGRHLCTLPVDPNIGKMLLMGAIFQCLNPALTIAAALAHRNPFVLPVNMQKEVDEAKRSFAGDSCSDHI 824 (908)
Q Consensus 745 gal~~~~~lT~lG~~~~~lpl~p~~~k~l~~~~~~~c~~~~l~i~a~l~~~~~f~~p~~~~~~~~~~~~~~~~~~~sD~l 824 (908)
|||+..+.||++|+.|++|||||.++||||.++.++|.+++|+|++||+++..|+.|.+..++++.+|.+|. ...||||
T Consensus 756 GAl~~~g~LT~lG~~MvefpLDP~lsKmll~a~~~Gc~dEilsIvSmLSvp~VF~rpker~eead~ar~Kf~-~~~sDhL 834 (1042)
T KOG0924|consen 756 GALDNTGQLTPLGRKMVEFPLDPPLSKMLLMAARMGCSDEILSIVSMLSVPAVFYRPKEREEEADAAREKFQ-VPESDHL 834 (1042)
T ss_pred hccccCCccchhhHHhhhCCCCchHHHHHHHHhccCcHHHHHHHHHHhcccceeeccccchhhhhhHHhhhc-CCCCchh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999 5789999
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCCccchhhhhc-ccCCCChhhhh
Q 002552 825 ALLKAFDGYKDAKRNRRERDFCWENFLSPITLQMMEDMRSQFLDLLSDIGFVDKSKGPSVRSYIFYYY-RKLSIPSPLLS 903 (908)
Q Consensus 825 ~~l~~f~~w~~~~~~~~~~~~c~~~~l~~~~l~~~~~~r~ql~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 903 (908)
|+||+|++|+. +.....||.+|+|+.++|+.+.++|.||+++|+..+++..|+ ..-+.+-.|+ .+++.|.|.+.
T Consensus 835 TlLNVf~qw~~---~~~~~~WCnd~~l~~kaL~~arevR~ql~~il~~l~~~l~S~--~dwdivrKCIcs~~fhn~Arlk 909 (1042)
T KOG0924|consen 835 TLLNVFNQWRK---NKYSSMWCNDHYLQVKALKKAREVRRQLLEILKQLKLPLISS--DDWDIVRKCICSAYFHNAARLK 909 (1042)
T ss_pred hHHHHHHHHHh---cCCchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHcCCCcccC--chHHHHHHHHHHHHHHHHHHhc
Confidence 99999999997 456679999999999999999999999999999999998776 3334333332 33444444444
No 5
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.4e-107 Score=856.73 Aligned_cols=564 Identities=40% Similarity=0.663 Sum_probs=521.0
Q ss_pred HHHHhccChhHHHHHHhhcCCCchHHHHHHHHHHHhCCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccH
Q 002552 261 RQEKLKSSDSGKAMLSFREKLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRR 340 (908)
Q Consensus 261 ~~~~~~~~~~~~~~~~~r~~lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r 340 (908)
.+...+++.+|.++++.|..||+|.+++++++.+.+|+.++++|+||||||||+||++++...... ..|.|+||+|
T Consensus 26 pf~~~p~s~rY~~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~~----~~v~CTQprr 101 (699)
T KOG0925|consen 26 PFNGKPYSQRYYDILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSHL----TGVACTQPRR 101 (699)
T ss_pred CCCCCcCcHHHHHHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhhc----cceeecCchH
Confidence 445567899999999999999999999999999999999999999999999999999999877653 4699999999
Q ss_pred HHHHHHHHHHHHHhCCCCCCEEeEEeeccccCCCCCcEEEEchHHHHHHHhcCCCCCcceEEEEechhccchhhHHHHHH
Q 002552 341 ISAISVAARVSSERGENLGETVGYQIRLESKRSAQTRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLII 420 (908)
Q Consensus 341 ~la~qi~~rv~~~~~~~~g~~vg~~~~~~~~~~~~~~Iiv~T~g~Ll~~l~~~~~l~~~~~iIiDEaHeR~~~~d~ll~~ 420 (908)
.+|+++|+||++|+...+|..|||.++++++.+++|-+.|||+|+|++..++++.|..|++||+||||||++.+|.+.++
T Consensus 102 vaamsva~RVadEMDv~lG~EVGysIrfEdC~~~~T~Lky~tDgmLlrEams~p~l~~y~viiLDeahERtlATDiLmGl 181 (699)
T KOG0925|consen 102 VAAMSVAQRVADEMDVTLGEEVGYSIRFEDCTSPNTLLKYCTDGMLLREAMSDPLLGRYGVIILDEAHERTLATDILMGL 181 (699)
T ss_pred HHHHHHHHHHHHHhccccchhccccccccccCChhHHHHHhcchHHHHHHhhCcccccccEEEechhhhhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHCccCCCCcEEEecccCChHHHHhhhCCCCccccCCccccceeeehhhHHHhhhcccCcccccccccccccccccch
Q 002552 421 LRDLLPRRPDLRLILMSATINADLFSKYFGNAPTVHIPGLTFPVTDLFLEDVLEKTRYKMNSKLDSFQGNSRRSRRQDSK 500 (908)
Q Consensus 421 lk~~~~~~~~~qiIlmSAT~~~~~~~~~f~~~~~i~v~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (908)
+|.++..+|++|+|+||||+++++|+.||+++|++.|+| .+||+++|.... +
T Consensus 182 lk~v~~~rpdLk~vvmSatl~a~Kfq~yf~n~Pll~vpg-~~PvEi~Yt~e~---------------------------e 233 (699)
T KOG0925|consen 182 LKEVVRNRPDLKLVVMSATLDAEKFQRYFGNAPLLAVPG-THPVEIFYTPEP---------------------------E 233 (699)
T ss_pred HHHHHhhCCCceEEEeecccchHHHHHHhCCCCeeecCC-CCceEEEecCCC---------------------------C
Confidence 999999999999999999999999999999999999999 999999997532 2
Q ss_pred hhhHhhhhhcccccccccchhhhhHhhHhhhhhhhhchHHHHHHHHHHHhccCCCcEEEecCCHHHHHHHHHHHHhc--c
Q 002552 501 KDHLTALFEDVDIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICRHEGDGAILVFLTGWNDISKLLDQIKVN--K 578 (908)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~~~~g~iLVF~~~~~~i~~l~~~L~~~--~ 578 (908)
+|.+.. ...++..||..+.+|+||||+++.++|+..++.+... .
T Consensus 234 rDylEa----------------------------------airtV~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~ 279 (699)
T KOG0925|consen 234 RDYLEA----------------------------------AIRTVLQIHMCEEPGDILVFLTGEEEIEDACRKISREVDN 279 (699)
T ss_pred hhHHHH----------------------------------HHHHHHHHHhccCCCCEEEEecCHHHHHHHHHHHHHHHHh
Confidence 222221 2345667777788999999999999999999998742 2
Q ss_pred cCCCCCceEEEeccCCCChHhHHhhhCCCCCC-----CcEEEEeccccccccCCCCeEEEEeCCCccceeeccccCcccc
Q 002552 579 FLGDPNKFLVLPLHGSMPTINQREIFDRPPPN-----KRKIVLATNIAESSITIDDVVYVVDCGKAKETSYDALNKLACL 653 (908)
Q Consensus 579 ~~~~~~~~~v~~lH~~l~~~er~~v~~~f~~g-----~~kIlvaT~iae~GidIp~v~~VId~g~~k~~~yd~~~~~~~l 653 (908)
+..+.....|+|+| +.+|..+|+..+.. .+||+|+||+||++++|++|.||||.|+.+++.|||..+..++
T Consensus 280 L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~RkvVvstniaetsltidgiv~VIDpGf~kqkVYNPRIRvesl 355 (699)
T KOG0925|consen 280 LGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGRKVVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESL 355 (699)
T ss_pred hccccCCceEEecC----chhhccccCCCCcccCCCccceEEEEecchheeeeeccEEEEecCchhhhcccCcceeeeee
Confidence 33445678999999 66777888877642 4899999999999999999999999999999999999999999
Q ss_pred ccccccHhhHHHhccccCCCCCcEEEEecChhhHh-hcCCCCCCccccCchHHHHHHHhhcCCCchhhhhhccCCCCCHH
Q 002552 654 LPSWISKASAHQRRGRAGRVQPGVCYKLYPRIIHD-AMLPYQLPEILRTPLQELCLHIKSLQLGTVGSFLSKALQPPDPL 732 (908)
Q Consensus 654 ~~~~iS~~~~~QR~GRaGR~~~G~~~~l~~~~~~~-~l~~~~~pei~r~~L~~~~L~~~~l~~~~~~~fl~~~~~~p~~~ 732 (908)
...+|||+++.||+|||||++||+||+||+++.|. .|.+.+.|||++.+|.+++|++|.+++.++.+| +|+|||.++
T Consensus 356 lv~PISkasA~qR~gragrt~pGkcfrLYte~~~~~em~~~typeilrsNL~s~VL~LKklgI~dlvhf--dfmDpPAPE 433 (699)
T KOG0925|consen 356 LVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAFEKEMQPQTYPEILRSNLSSTVLQLKKLGIDDLVHF--DFMDPPAPE 433 (699)
T ss_pred eeccchHhHHHHHhhhccCCCCCceEEeecHHhhhhcCCCCCcHHHHHHhhHHHHHHHHhcCcccccCC--cCCCCCChH
Confidence 99999999999999999999999999999999885 699999999999999999999999999999999 999999999
Q ss_pred HHHHHHHHHHHcCCCCCCCCcCccccccccccCCchhhHHHHHhhhccChHHHHHHHhhhccCCCCCCcc-ccHHHHHHH
Q 002552 733 AVQNAIELLKTIGALDDMENLTPLGRHLCTLPVDPNIGKMLLMGAIFQCLNPALTIAAALAHRNPFVLPV-NMQKEVDEA 811 (908)
Q Consensus 733 ~v~~al~~L~~~gal~~~~~lT~lG~~~~~lpl~p~~~k~l~~~~~~~c~~~~l~i~a~l~~~~~f~~p~-~~~~~~~~~ 811 (908)
.+.+|++.|..++|||++++||++|.+|++||+||+++||||.++.|+|.+++|+|+|||++++.|+.|. +.++.++.+
T Consensus 434 tLMrALE~LnYLaaLdDdGnLT~lG~imSEFPLdPqLAkmLi~S~efnCsnEiLsisAMLsvPncFvRp~~~a~kaAdea 513 (699)
T KOG0925|consen 434 TLMRALEVLNYLAALDDDGNLTSLGEIMSEFPLDPQLAKMLIGSCEFNCSNEILSISAMLSVPNCFVRPTSSASKAADEA 513 (699)
T ss_pred HHHHHHHHhhhhhhhCCCcccchhhhhhhcCCCChHHHHHHhhcCCCCchHHHHHHHhcccCCccccCCChhHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998 778899999
Q ss_pred HHhhcCCCCCcHHHHHHHHHHHHHHHcCCcHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCCccchhhhh
Q 002552 812 KRSFAGDSCSDHIALLKAFDGYKDAKRNRRERDFCWENFLSPITLQMMEDMRSQFLDLLSDIGFVDKSKGPSVRSYIFYY 891 (908)
Q Consensus 812 ~~~~~~~~~sD~l~~l~~f~~w~~~~~~~~~~~~c~~~~l~~~~l~~~~~~r~ql~~~l~~~~~~~~~~~~~~~~~~~~~ 891 (908)
++.|+ +..|||+|++|+|++|++ ++...+||++||||+++|+++..+|+||+++|.++++...+.++++.+|
T Consensus 514 k~~fa-H~dGDHlTLlnVYhAfkq---~~~~~~WC~~~flN~ral~~Ad~vR~qL~rim~R~~L~~~st~F~S~~y---- 585 (699)
T KOG0925|consen 514 KETFA-HIDGDHLTLLNVYHAFKQ---NNEDPNWCYDNFLNYRALKSADNVRQQLLRIMDRFNLPLCSTDFGSRDY---- 585 (699)
T ss_pred HHHhc-cCCcchHHHHHHHHHHHh---cCCChhHHHHhcccHHHHHhHHHHHHHHHHHHHHhcCcccCCCCCChhH----
Confidence 99999 688999999999999998 4456799999999999999999999999999999999999999999886
Q ss_pred cccCCCChhhhhccc
Q 002552 892 YRKLSIPSPLLSLLV 906 (908)
Q Consensus 892 ~~~~~~~~~~~~~~~ 906 (908)
.+.|-.|+++|++
T Consensus 586 --~~nirKALvsgyF 598 (699)
T KOG0925|consen 586 --YVNIRKALVSGYF 598 (699)
T ss_pred --HHHHHHHHHHHHH
Confidence 4567788888664
No 6
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=7.3e-99 Score=912.50 Aligned_cols=554 Identities=36% Similarity=0.607 Sum_probs=495.3
Q ss_pred HHHhhcCCCchHHHHHHHHHHHhCCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHH
Q 002552 274 MLSFREKLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSE 353 (908)
Q Consensus 274 ~~~~r~~lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~~ 353 (908)
.+.++..||++.+++++++++.+++++||+|+||||||||+|+++++.. .+..++|+|+||+|.+|.++|+|++++
T Consensus 66 ~~~~~~~LPi~~~r~~Il~ai~~~~VviI~GeTGSGKTTqlPq~lle~g----~g~~g~I~~TQPRRlAArsLA~RVA~E 141 (1294)
T PRK11131 66 EITYPENLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICLELG----RGVKGLIGHTQPRRLAARTVANRIAEE 141 (1294)
T ss_pred ccCCCCCCCHHHHHHHHHHHHHhCCeEEEECCCCCCHHHHHHHHHHHcC----CCCCCceeeCCCcHHHHHHHHHHHHHH
Confidence 4667889999999999999999999999999999999999999998753 344568999999999999999999999
Q ss_pred hCCCCCCEEeEEeeccccCCCCCcEEEEchHHHHHHHhcCCCCCcceEEEEechhccchhhHHHHHHHHHHCccCCCCcE
Q 002552 354 RGENLGETVGYQIRLESKRSAQTRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRL 433 (908)
Q Consensus 354 ~~~~~g~~vg~~~~~~~~~~~~~~Iiv~T~g~Ll~~l~~~~~l~~~~~iIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qi 433 (908)
++..+|..|||+++++++.+.+++|+|||||+|++.+..++.|++|++|||||||||++++||++.+++.++..+|++|+
T Consensus 142 l~~~lG~~VGY~vrf~~~~s~~t~I~v~TpG~LL~~l~~d~~Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~~rpdlKv 221 (1294)
T PRK11131 142 LETELGGCVGYKVRFNDQVSDNTMVKLMTDGILLAEIQQDRLLMQYDTIIIDEAHERSLNIDFILGYLKELLPRRPDLKV 221 (1294)
T ss_pred HhhhhcceeceeecCccccCCCCCEEEEChHHHHHHHhcCCccccCcEEEecCccccccccchHHHHHHHhhhcCCCceE
Confidence 99999999999999999998999999999999999999999999999999999999999999999999999998899999
Q ss_pred EEecccCChHHHHhhhCCCCccccCCccccceeeehhhHHHhhhcccCcccccccccccccccccchhhhHhhhhhcccc
Q 002552 434 ILMSATINADLFSKYFGNAPTVHIPGLTFPVTDLFLEDVLEKTRYKMNSKLDSFQGNSRRSRRQDSKKDHLTALFEDVDI 513 (908)
Q Consensus 434 IlmSAT~~~~~~~~~f~~~~~i~v~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (908)
|+||||++.+.|++||+++|++.|+|+.|||+++|...... + ...+.+.+.
T Consensus 222 ILmSATid~e~fs~~F~~apvI~V~Gr~~pVei~y~p~~~~----------~-----------~~~~~d~l~-------- 272 (1294)
T PRK11131 222 IITSATIDPERFSRHFNNAPIIEVSGRTYPVEVRYRPIVEE----------A-----------DDTERDQLQ-------- 272 (1294)
T ss_pred EEeeCCCCHHHHHHHcCCCCEEEEcCccccceEEEeecccc----------c-----------chhhHHHHH--------
Confidence 99999999999999999999999999999999888642100 0 000001100
Q ss_pred cccccchhhhhHhhHhhhhhhhhchHHHHHHHHHHHhccCCCcEEEecCCHHHHHHHHHHHHhcccCCCCCceEEEeccC
Q 002552 514 DSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICRHEGDGAILVFLTGWNDISKLLDQIKVNKFLGDPNKFLVLPLHG 593 (908)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lH~ 593 (908)
.+...+..++ ....|+|||||||+++|+.+++.|..... ....|+++||
T Consensus 273 --------------------------~ll~~V~~l~-~~~~GdILVFLpg~~EIe~lae~L~~~~~----~~~~VlpLhg 321 (1294)
T PRK11131 273 --------------------------AIFDAVDELG-REGPGDILIFMSGEREIRDTADALNKLNL----RHTEILPLYA 321 (1294)
T ss_pred --------------------------HHHHHHHHHh-cCCCCCEEEEcCCHHHHHHHHHHHHhcCC----CcceEeeccc
Confidence 1222333343 34678999999999999999999987432 3466899999
Q ss_pred CCChHhHHhhhCCCCCCCcEEEEeccccccccCCCCeEEEEeCCCccceeeccccCccccccccccHhhHHHhccccCCC
Q 002552 594 SMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRV 673 (908)
Q Consensus 594 ~l~~~er~~v~~~f~~g~~kIlvaT~iae~GidIp~v~~VId~g~~k~~~yd~~~~~~~l~~~~iS~~~~~QR~GRaGR~ 673 (908)
+|++++|..+|+. .|.++|||||||||+|||||+|+||||+|+.|.+.||+.++++.+...|||+++|.||+|||||.
T Consensus 322 ~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~ 399 (1294)
T PRK11131 322 RLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRV 399 (1294)
T ss_pred CCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCCccccccccccCcccCCeeecCHhhHhhhccccCCC
Confidence 9999999999986 58899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEecChhhHhhcCCCCCCccccCchHHHHHHHhhcCCCchhhhhhccCCCCCHHHHHHHHHHHHHcCCCCCC---
Q 002552 674 QPGVCYKLYPRIIHDAMLPYQLPEILRTPLQELCLHIKSLQLGTVGSFLSKALQPPDPLAVQNAIELLKTIGALDDM--- 750 (908)
Q Consensus 674 ~~G~~~~l~~~~~~~~l~~~~~pei~r~~L~~~~L~~~~l~~~~~~~fl~~~~~~p~~~~v~~al~~L~~~gal~~~--- 750 (908)
++|+||+||++++|..+++++.|||+|++|.++||++++++++++..| .|++||+..+|..|++.|.++||||.+
T Consensus 400 ~~G~c~rLyte~d~~~~~~~~~PEIlR~~L~~viL~lk~lgl~di~~F--~fldpP~~~~i~~al~~L~~LgAld~~~~~ 477 (1294)
T PRK11131 400 SEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAF--PFVEAPDKRNIQDGVRLLEELGAITTDEQA 477 (1294)
T ss_pred CCcEEEEeCCHHHHHhhhcccCCccccCCHHHHHHHHHHcCCCCccee--eCCCCCCHHHHHHHHHHHHHCCCCCccccC
Confidence 999999999999999999999999999999999999999999999999 799999999999999999999999864
Q ss_pred --CCcCccccccccccCCchhhHHHHHhhhccChHHHHHHHhhhccCCCCCCccccHHHHHHHHHhhcCCCCCcHHHHHH
Q 002552 751 --ENLTPLGRHLCTLPVDPNIGKMLLMGAIFQCLNPALTIAAALAHRNPFVLPVNMQKEVDEAKRSFAGDSCSDHIALLK 828 (908)
Q Consensus 751 --~~lT~lG~~~~~lpl~p~~~k~l~~~~~~~c~~~~l~i~a~l~~~~~f~~p~~~~~~~~~~~~~~~~~~~sD~l~~l~ 828 (908)
++||++|+.|++||+||++||||+.|+.++|++++++|||+|++++||..|.+.+++++.++++|. +..|||++++|
T Consensus 478 ~~~~LT~lG~~la~LPldPrlakmLl~a~~~~c~~evl~IaA~Lsv~dpf~~p~~~~~~a~~~~~~f~-~~~sD~lt~ln 556 (1294)
T PRK11131 478 SAYKLTPLGRQLAQLPVDPRLARMVLEAQKHGCVREVMIITSALSIQDPRERPMDKQQASDEKHRRFA-DKESDFLAFVN 556 (1294)
T ss_pred CCccCcHHHHHHHhCCCChHHHHHHHHhhhcCCHHHHHHHHHHHcCCCcccCCchhHHHHHHHHHhhC-CCCCCHHHHHH
Confidence 469999999999999999999999999999999999999999999999999999999999999998 57899999999
Q ss_pred HHHHHHHHHc---CCcHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCCccchhhhhcccCCCChhhhhcc
Q 002552 829 AFDGYKDAKR---NRRERDFCWENFLSPITLQMMEDMRSQFLDLLSDIGFVDKSKGPSVRSYIFYYYRKLSIPSPLLSLL 905 (908)
Q Consensus 829 ~f~~w~~~~~---~~~~~~~c~~~~l~~~~l~~~~~~r~ql~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 905 (908)
+|+.|.+... .+..++||++||||+.+|+++.+++.||..+++++|+...+...+.. .|+.+|++||
T Consensus 557 ~~~~~~~~~~~~s~~~~~~~C~~~~L~~~~l~e~~~i~~QL~~~~~~~g~~~~~~~~~~~----------~i~~all~G~ 626 (1294)
T PRK11131 557 LWNYLQEQQKALSSNQFRRLCRTDYLNYLRVREWQDIYTQLRQVVKELGIPVNSEPAEYR----------EIHTALLTGL 626 (1294)
T ss_pred HHHHHHHHHhhhcchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCcccHH----------HHHHHHHhhc
Confidence 9999986432 22346899999999999999999999999999999998765443222 5778888877
Q ss_pred c
Q 002552 906 V 906 (908)
Q Consensus 906 ~ 906 (908)
+
T Consensus 627 ~ 627 (1294)
T PRK11131 627 L 627 (1294)
T ss_pred H
Confidence 5
No 7
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=6.8e-97 Score=867.49 Aligned_cols=557 Identities=43% Similarity=0.656 Sum_probs=496.2
Q ss_pred HHHHHHHhccChhHHHHHHhhcCCCchHHHHHHHHHHHhCCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEc
Q 002552 258 LKERQEKLKSSDSGKAMLSFREKLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQ 337 (908)
Q Consensus 258 l~~~~~~~~~~~~~~~~~~~r~~lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~ 337 (908)
....+.....++.+.++..++..||++..+.+++.++.+++++||+||||||||||+|+++++..+ +...+|+|+|
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~LPv~~~~~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~----~~~g~I~~tQ 101 (845)
T COG1643 26 RGSGMDARSRSANVPDILEYRSGLPVTAVRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGL----GIAGKIGCTQ 101 (845)
T ss_pred hhhhhhhhhcccccchhhhccccCCcHHHHHHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhc----ccCCeEEecC
Confidence 334444555667788899999999999999999999999999999999999999999999999876 3356899999
Q ss_pred ccHHHHHHHHHHHHHHhCCCCCCEEeEEeeccccCCCCCcEEEEchHHHHHHHhcCCCCCcceEEEEechhccchhhHHH
Q 002552 338 PRRISAISVAARVSSERGENLGETVGYQIRLESKRSAQTRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFL 417 (908)
Q Consensus 338 P~r~la~qi~~rv~~~~~~~~g~~vg~~~~~~~~~~~~~~Iiv~T~g~Ll~~l~~~~~l~~~~~iIiDEaHeR~~~~d~l 417 (908)
|||.+|.++|+|++++++..+|..|||++|+++..+++|+|.|+|+|+|+++++.|+.|+.|++|||||||||++++||+
T Consensus 102 PRRlAArsvA~RvAeel~~~~G~~VGY~iRfe~~~s~~Trik~mTdGiLlrei~~D~~Ls~ys~vIiDEaHERSl~tDil 181 (845)
T COG1643 102 PRRLAARSVAERVAEELGEKLGETVGYSIRFESKVSPRTRIKVMTDGILLREIQNDPLLSGYSVVIIDEAHERSLNTDIL 181 (845)
T ss_pred chHHHHHHHHHHHHHHhCCCcCceeeEEEEeeccCCCCceeEEeccHHHHHHHhhCcccccCCEEEEcchhhhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHCccCC-CCcEEEecccCChHHHHhhhCCCCccccCCccccceeeehhhHHHhhhcccCccccccccccccccc
Q 002552 418 LIILRDLLPRRP-DLRLILMSATINADLFSKYFGNAPTVHIPGLTFPVTDLFLEDVLEKTRYKMNSKLDSFQGNSRRSRR 496 (908)
Q Consensus 418 l~~lk~~~~~~~-~~qiIlmSAT~~~~~~~~~f~~~~~i~v~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (908)
+++++.++..++ ++|+|+||||+|.+.|++||+++|++.++||.|||+++|.+....
T Consensus 182 Lgllk~~~~~rr~DLKiIimSATld~~rfs~~f~~apvi~i~GR~fPVei~Y~~~~~~---------------------- 239 (845)
T COG1643 182 LGLLKDLLARRRDDLKLIIMSATLDAERFSAYFGNAPVIEIEGRTYPVEIRYLPEAEA---------------------- 239 (845)
T ss_pred HHHHHHHHhhcCCCceEEEEecccCHHHHHHHcCCCCEEEecCCccceEEEecCCCCc----------------------
Confidence 999999777655 899999999999999999999999999999999999999754210
Q ss_pred ccchhhh-HhhhhhcccccccccchhhhhHhhHhhhhhhhhchHHHHHHHHHHHhccCCCcEEEecCCHHHHHHHHHHHH
Q 002552 497 QDSKKDH-LTALFEDVDIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICRHEGDGAILVFLTGWNDISKLLDQIK 575 (908)
Q Consensus 497 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~~~~g~iLVF~~~~~~i~~l~~~L~ 575 (908)
+. +. +-+...+. ++.....|+||||+|+.++|+.+++.|.
T Consensus 240 -----d~~l~---------------------------------~ai~~~v~-~~~~~~~GdILvFLpG~~EI~~~~~~L~ 280 (845)
T COG1643 240 -----DYILL---------------------------------DAIVAAVD-IHLREGSGSILVFLPGQREIERTAEWLE 280 (845)
T ss_pred -----chhHH---------------------------------HHHHHHHH-HhccCCCCCEEEECCcHHHHHHHHHHHH
Confidence 00 00 00222232 3334568999999999999999999998
Q ss_pred hcccCCCCCceEEEeccCCCChHhHHhhhCCCCCCCcEEEEeccccccccCCCCeEEEEeCCCccceeeccccCcccccc
Q 002552 576 VNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETSYDALNKLACLLP 655 (908)
Q Consensus 576 ~~~~~~~~~~~~v~~lH~~l~~~er~~v~~~f~~g~~kIlvaT~iae~GidIp~v~~VId~g~~k~~~yd~~~~~~~l~~ 655 (908)
+..+. ....|+|+||.|+.++|.+||+..+.|++|||+||||||+|||||+|+||||+|+.|.+.||+.++++.|.+
T Consensus 281 ~~~l~---~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L~~ 357 (845)
T COG1643 281 KAELG---DDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLET 357 (845)
T ss_pred hcccc---CCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCcccccccccccCceeeeE
Confidence 72221 468999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccHhhHHHhccccCCCCCcEEEEecChhhHhhcCCCCCCccccCchHHHHHHHhhcCCC-chhhhhhccCCCCCHHHH
Q 002552 656 SWISKASAHQRRGRAGRVQPGVCYKLYPRIIHDAMLPYQLPEILRTPLQELCLHIKSLQLG-TVGSFLSKALQPPDPLAV 734 (908)
Q Consensus 656 ~~iS~~~~~QR~GRaGR~~~G~~~~l~~~~~~~~l~~~~~pei~r~~L~~~~L~~~~l~~~-~~~~fl~~~~~~p~~~~v 734 (908)
+|||++++.||+|||||+.||+||+||++++|..|+.++.|||++++|+.++|+++++|++ ++..| .|+|||+..++
T Consensus 358 ~~ISqAsA~QRaGRAGR~~pGicyRLyse~~~~~~~~~t~PEIlrtdLs~~vL~l~~~G~~~d~~~f--~fld~P~~~~i 435 (845)
T COG1643 358 EPISKASADQRAGRAGRTGPGICYRLYSEEDFLAFPEFTLPEILRTDLSGLVLQLKSLGIGQDIAPF--PFLDPPPEAAI 435 (845)
T ss_pred EEechhhhhhhccccccCCCceEEEecCHHHHHhcccCCChhhhhcchHHHHHHHHhcCCCCCcccC--ccCCCCChHHH
Confidence 9999999999999999999999999999999999999999999999999999999999996 99999 99999999999
Q ss_pred HHHHHHHHHcCCCCCCCCcCccccccccccCCchhhHHHHHhhhccChHHHHHHHhhhccCC---CCCCccccHH---HH
Q 002552 735 QNAIELLKTIGALDDMENLTPLGRHLCTLPVDPNIGKMLLMGAIFQCLNPALTIAAALAHRN---PFVLPVNMQK---EV 808 (908)
Q Consensus 735 ~~al~~L~~~gal~~~~~lT~lG~~~~~lpl~p~~~k~l~~~~~~~c~~~~l~i~a~l~~~~---~f~~p~~~~~---~~ 808 (908)
..|++.|..+||||..+.||++|+.|+.||+||++++||+.+..++|+.++++|||+|+.++ .|..+.+.++ +.
T Consensus 436 ~~A~~~L~~LGAld~~g~LT~lG~~ms~lpldprLA~mLl~a~~~g~~~e~~~Ias~Ls~~~~~s~~~~~~~~~~~~~~~ 515 (845)
T COG1643 436 QAALTLLQELGALDDSGKLTPLGKQMSLLPLDPRLARMLLTAPEGGCLGEAATIASMLSEQDRESDFSRDVKLRKQRTAQ 515 (845)
T ss_pred HHHHHHHHHcCCcCCCCCCCHHHHHHHhCCCChHHHHHHHhccccCcHHHHHHHHHhhccCCCcchhccccchhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998 6877776655 44
Q ss_pred HHHH-Hhhc--CCCCCcHHHHHHHHHHHHHHHcCC---cHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHh-CCCCcCCCC
Q 002552 809 DEAK-RSFA--GDSCSDHIALLKAFDGYKDAKRNR---RERDFCWENFLSPITLQMMEDMRSQFLDLLSD-IGFVDKSKG 881 (908)
Q Consensus 809 ~~~~-~~~~--~~~~sD~l~~l~~f~~w~~~~~~~---~~~~~c~~~~l~~~~l~~~~~~r~ql~~~l~~-~~~~~~~~~ 881 (908)
+.++ ..+. .++.+||++++++|..|...+... ....||..++++.+.|..+..++.+++..+.. .|.+.....
T Consensus 516 ~~~~~l~~~~~~~~~~d~~~ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~i~~~~l~~~~~~~~~~~~~~~ 595 (845)
T COG1643 516 DLLKRLKRRNAADPRGDHLLLLEAFPDRIARKRAKGEYLRANGCRAMLFPTKALSRAPWIIAALLVQTSALAGRILAAAE 595 (845)
T ss_pred HHHHHHHhccCCCcchHHHHHHHHHHHHHHhhhccchhhHhcChhhhcCChhHHHhhHHHHHHHHHhhhccccchhhhcc
Confidence 4444 2222 236799999999999999875311 24689999999999999999999999998888 666654444
Q ss_pred CCc
Q 002552 882 PSV 884 (908)
Q Consensus 882 ~~~ 884 (908)
.+.
T Consensus 596 ~~~ 598 (845)
T COG1643 596 IDE 598 (845)
T ss_pred cCc
Confidence 433
No 8
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=2.6e-96 Score=894.28 Aligned_cols=539 Identities=37% Similarity=0.634 Sum_probs=486.9
Q ss_pred HHHHHhhcCCCchHHHHHHHHHHHhCCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHH
Q 002552 272 KAMLSFREKLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVS 351 (908)
Q Consensus 272 ~~~~~~r~~lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~ 351 (908)
...+.++..||++.++.+++.++.+++++||+|+|||||||++|+++++.. .+..++|+|+||||.+|.++|+|++
T Consensus 57 ~~~~~~~~~LPi~~~~~~Il~~l~~~~vvii~g~TGSGKTTqlPq~lle~~----~~~~~~I~~tQPRRlAA~svA~RvA 132 (1283)
T TIGR01967 57 VPEIRYPDNLPVSAKREDIAEAIAENQVVIIAGETGSGKTTQLPKICLELG----RGSHGLIGHTQPRRLAARTVAQRIA 132 (1283)
T ss_pred cccccCCCCCCHHHHHHHHHHHHHhCceEEEeCCCCCCcHHHHHHHHHHcC----CCCCceEecCCccHHHHHHHHHHHH
Confidence 345678889999999999999999999999999999999999999999853 3445689999999999999999999
Q ss_pred HHhCCCCCCEEeEEeeccccCCCCCcEEEEchHHHHHHHhcCCCCCcceEEEEechhccchhhHHHHHHHHHHCccCCCC
Q 002552 352 SERGENLGETVGYQIRLESKRSAQTRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDL 431 (908)
Q Consensus 352 ~~~~~~~g~~vg~~~~~~~~~~~~~~Iiv~T~g~Ll~~l~~~~~l~~~~~iIiDEaHeR~~~~d~ll~~lk~~~~~~~~~ 431 (908)
++++..+|..|||+++++++.+.+++|+|+|+|+|++++..++.|++|++|||||||||++++||++.+++.++..++++
T Consensus 133 ~elg~~lG~~VGY~vR~~~~~s~~T~I~~~TdGiLLr~l~~d~~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~rpdL 212 (1283)
T TIGR01967 133 EELGTPLGEKVGYKVRFHDQVSSNTLVKLMTDGILLAETQQDRFLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPRRPDL 212 (1283)
T ss_pred HHhCCCcceEEeeEEcCCcccCCCceeeeccccHHHHHhhhCcccccCcEEEEcCcchhhccchhHHHHHHHHHhhCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999889999
Q ss_pred cEEEecccCChHHHHhhhCCCCccccCCccccceeeehhhHHHhhhcccCcccccccccccccccccchhhhHhhhhhcc
Q 002552 432 RLILMSATINADLFSKYFGNAPTVHIPGLTFPVTDLFLEDVLEKTRYKMNSKLDSFQGNSRRSRRQDSKKDHLTALFEDV 511 (908)
Q Consensus 432 qiIlmSAT~~~~~~~~~f~~~~~i~v~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (908)
|+|+||||++.+.|++||+++|++.++|+.|||+.+|...... . .....+.
T Consensus 213 KlIlmSATld~~~fa~~F~~apvI~V~Gr~~PVev~Y~~~~~~----------~-----------~~~~~~~-------- 263 (1283)
T TIGR01967 213 KIIITSATIDPERFSRHFNNAPIIEVSGRTYPVEVRYRPLVEE----------Q-----------EDDDLDQ-------- 263 (1283)
T ss_pred eEEEEeCCcCHHHHHHHhcCCCEEEECCCcccceeEEeccccc----------c-----------cchhhhH--------
Confidence 9999999999999999999999999999999999888531000 0 0000000
Q ss_pred cccccccchhhhhHhhHhhhhhhhhchHHHHHHHHHHHhccCCCcEEEecCCHHHHHHHHHHHHhcccCCCCCceEEEec
Q 002552 512 DIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICRHEGDGAILVFLTGWNDISKLLDQIKVNKFLGDPNKFLVLPL 591 (908)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~v~~l 591 (908)
...+..++..++. ...|+||||+||+++|+.+++.|..... ..+.|+++
T Consensus 264 --------------------------~~~i~~~I~~l~~-~~~GdILVFLpg~~EI~~l~~~L~~~~~----~~~~VlpL 312 (1283)
T TIGR01967 264 --------------------------LEAILDAVDELFA-EGPGDILIFLPGEREIRDAAEILRKRNL----RHTEILPL 312 (1283)
T ss_pred --------------------------HHHHHHHHHHHHh-hCCCCEEEeCCCHHHHHHHHHHHHhcCC----CCcEEEec
Confidence 0113334444543 3568999999999999999999986432 35789999
Q ss_pred cCCCChHhHHhhhCCCCCCCcEEEEeccccccccCCCCeEEEEeCCCccceeeccccCccccccccccHhhHHHhccccC
Q 002552 592 HGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAG 671 (908)
Q Consensus 592 H~~l~~~er~~v~~~f~~g~~kIlvaT~iae~GidIp~v~~VId~g~~k~~~yd~~~~~~~l~~~~iS~~~~~QR~GRaG 671 (908)
||+|++++|+++|+.+ +.++|||||||||+|||||+|+||||+|+++.+.||+.++++.|...|||+++|.||+||||
T Consensus 313 hg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAG 390 (1283)
T TIGR01967 313 YARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCG 390 (1283)
T ss_pred cCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCCccccccccccCccccCCccCCHHHHHHHhhhhC
Confidence 9999999999999875 35899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcEEEEecChhhHhhcCCCCCCccccCchHHHHHHHhhcCCCchhhhhhccCCCCCHHHHHHHHHHHHHcCCCCCCC
Q 002552 672 RVQPGVCYKLYPRIIHDAMLPYQLPEILRTPLQELCLHIKSLQLGTVGSFLSKALQPPDPLAVQNAIELLKTIGALDDME 751 (908)
Q Consensus 672 R~~~G~~~~l~~~~~~~~l~~~~~pei~r~~L~~~~L~~~~l~~~~~~~fl~~~~~~p~~~~v~~al~~L~~~gal~~~~ 751 (908)
|.++|+||+||++++|..+++++.|||+|++|.+++|+++++++.++.+| .|++||+..++..|++.|..+||||.++
T Consensus 391 R~~~G~cyRLyte~~~~~~~~~~~PEIlR~~L~~viL~l~~lg~~di~~f--~fldpP~~~~i~~A~~~L~~LGAld~~~ 468 (1283)
T TIGR01967 391 RVAPGICIRLYSEEDFNSRPEFTDPEILRTNLASVILQMLALRLGDIAAF--PFIEAPDPRAIRDGFRLLEELGALDDDE 468 (1283)
T ss_pred CCCCceEEEecCHHHHHhhhhccCcccccccHHHHHHHHHhcCCCCcccc--cCCCCCCHHHHHHHHHHHHHCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999 8999999999999999999999999888
Q ss_pred ---CcCccccccccccCCchhhHHHHHhhhccChHHHHHHHhhhccCCCCCCccccHHHHHHHHHhhcCCCCCcHHHHHH
Q 002552 752 ---NLTPLGRHLCTLPVDPNIGKMLLMGAIFQCLNPALTIAAALAHRNPFVLPVNMQKEVDEAKRSFAGDSCSDHIALLK 828 (908)
Q Consensus 752 ---~lT~lG~~~~~lpl~p~~~k~l~~~~~~~c~~~~l~i~a~l~~~~~f~~p~~~~~~~~~~~~~~~~~~~sD~l~~l~ 828 (908)
+||++|+.|+.||+||++||||+.|+.++|++++++|||+|+.++||..|.+.+++++.++++|. +..|||++++|
T Consensus 469 ~~~~LT~lGr~ma~LPldPrlarmLl~a~~~gcl~e~l~IaA~Ls~~dp~~~p~~~~~~a~~~~~~f~-~~~sD~l~~L~ 547 (1283)
T TIGR01967 469 AEPQLTPIGRQLAQLPVDPRLARMLLEAHRLGCLQEVLIIASALSIQDPRERPMEKQQAADQAHARFK-DPRSDFLSRVN 547 (1283)
T ss_pred CCccccHHHHHHhhcCCChHHHHHHHHhhhcCCHHHHHHHHHHHcCCCcCCCcchhHHHHHHHHHHhc-CCCCCHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999998 56799999999
Q ss_pred HHHHHHHHHcC---CcHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhCCCCcCC
Q 002552 829 AFDGYKDAKRN---RRERDFCWENFLSPITLQMMEDMRSQFLDLLSDIGFVDKS 879 (908)
Q Consensus 829 ~f~~w~~~~~~---~~~~~~c~~~~l~~~~l~~~~~~r~ql~~~l~~~~~~~~~ 879 (908)
+|+.|.+.... +..++||++||||+..|+++.++++||..+++++|+...+
T Consensus 548 ~~~~~~~~~~~~~~~~~~~~C~~~fL~~~~l~~~~~i~~QL~~~~~~~~~~~~~ 601 (1283)
T TIGR01967 548 LWRHIEEQRQALSANQFRNACRKQYLNYLRVREWQDIYRQLTQVVKELGLKLNE 601 (1283)
T ss_pred HHHHHHHhhhhccchHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHcCCCcCC
Confidence 99999865321 2347899999999999999999999999999999987544
No 9
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.2e-90 Score=766.19 Aligned_cols=538 Identities=35% Similarity=0.561 Sum_probs=476.7
Q ss_pred ChhHHHHHHhhcCCCchHHHHHHHHHHHhCCeEEEEecCCCCccchHHHHHHHHHHhccCCC-CcEEEEEcccHHHHHHH
Q 002552 268 SDSGKAMLSFREKLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGA-DCNIICTQPRRISAISV 346 (908)
Q Consensus 268 ~~~~~~~~~~r~~lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~-~~~ilv~~P~r~la~qi 346 (908)
-.+..++++.|..|||.....+|+++|..|.++||||+||||||||+|||+++..+.+.... ...|-||||||.+|+.+
T Consensus 242 V~R~~EIQ~sR~~LPI~aeEq~IMEaIn~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiam 321 (1172)
T KOG0926|consen 242 VSRPAEIQESRLDLPIVAEEQRIMEAINENPVVIICGETGSGKTTQVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAM 321 (1172)
T ss_pred ecCcHHHHHHHhcCchhHHHHHHHHHhhcCCeEEEecCCCCCccccchHHHHHcccCCccCCCCCeeeecCchHHHHHHH
Confidence 45667899999999999999999999999999999999999999999999999988765333 34889999999999999
Q ss_pred HHHHHHHhCCCCCCEEeEEeeccccCCCCCcEEEEchHHHHHHHhcCCCCCcceEEEEechhccchhhHHHHHHHHHHCc
Q 002552 347 AARVSSERGENLGETVGYQIRLESKRSAQTRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLP 426 (908)
Q Consensus 347 ~~rv~~~~~~~~g~~vg~~~~~~~~~~~~~~Iiv~T~g~Ll~~l~~~~~l~~~~~iIiDEaHeR~~~~d~ll~~lk~~~~ 426 (908)
|+||+.|++. .|..|||++|++....+.|.|.|||+|+||+.+.+|..|..|++|||||||||++++|+|+++|.++.+
T Consensus 322 AkRVa~EL~~-~~~eVsYqIRfd~ti~e~T~IkFMTDGVLLrEi~~DflL~kYSvIIlDEAHERSvnTDILiGmLSRiV~ 400 (1172)
T KOG0926|consen 322 AKRVAFELGV-LGSEVSYQIRFDGTIGEDTSIKFMTDGVLLREIENDFLLTKYSVIILDEAHERSVNTDILIGMLSRIVP 400 (1172)
T ss_pred HHHHHHHhcc-CccceeEEEEeccccCCCceeEEecchHHHHHHHHhHhhhhceeEEechhhhccchHHHHHHHHHHHHH
Confidence 9999999998 899999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred cC----------CCCcEEEecccCChHHHH---hhhC-CCCccccCCccccceeeehhhHHHhhhcccCccccccccccc
Q 002552 427 RR----------PDLRLILMSATINADLFS---KYFG-NAPTVHIPGLTFPVTDLFLEDVLEKTRYKMNSKLDSFQGNSR 492 (908)
Q Consensus 427 ~~----------~~~qiIlmSAT~~~~~~~---~~f~-~~~~i~v~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 492 (908)
.| ..+|+|+||||+-.+.|. ..|. .+|++.|+.|.|||.+||-...
T Consensus 401 LR~k~~ke~~~~kpLKLIIMSATLRVsDFtenk~LFpi~pPlikVdARQfPVsIHF~krT-------------------- 460 (1172)
T KOG0926|consen 401 LRQKYYKEQCQIKPLKLIIMSATLRVSDFTENKRLFPIPPPLIKVDARQFPVSIHFNKRT-------------------- 460 (1172)
T ss_pred HHHHHhhhhcccCceeEEEEeeeEEecccccCceecCCCCceeeeecccCceEEEeccCC--------------------
Confidence 43 268999999999888876 4555 3679999999999999984310
Q ss_pred ccccccchhhhHhhhhhcccccccccchhhhhHhhHhhhhhhhhchHHHHHHHHHHHhccCCCcEEEecCCHHHHHHHHH
Q 002552 493 RSRRQDSKKDHLTALFEDVDIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICRHEGDGAILVFLTGWNDISKLLD 572 (908)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~~~~g~iLVF~~~~~~i~~l~~ 572 (908)
..|++.++| .-...||+..++|.||||+++..+++.|++
T Consensus 461 -------~~DYi~eAf----------------------------------rKtc~IH~kLP~G~ILVFvTGQqEV~qL~~ 499 (1172)
T KOG0926|consen 461 -------PDDYIAEAF----------------------------------RKTCKIHKKLPPGGILVFVTGQQEVDQLCE 499 (1172)
T ss_pred -------CchHHHHHH----------------------------------HHHHHHhhcCCCCcEEEEEeChHHHHHHHH
Confidence 113333322 234567888899999999999999999999
Q ss_pred HHHhccc-------------------------------------------------------------------------
Q 002552 573 QIKVNKF------------------------------------------------------------------------- 579 (908)
Q Consensus 573 ~L~~~~~------------------------------------------------------------------------- 579 (908)
.|++...
T Consensus 500 kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~~~~~raa~~~~~De~~~~n 579 (1172)
T KOG0926|consen 500 KLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSGFASLRAAFNALADENGSVN 579 (1172)
T ss_pred HHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhhcccchhhhhhhhcccccccccc
Confidence 9975100
Q ss_pred -------------------CCCCCceEEEeccCCCChHhHHhhhCCCCCCCcEEEEeccccccccCCCCeEEEEeCCCcc
Q 002552 580 -------------------LGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDCGKAK 640 (908)
Q Consensus 580 -------------------~~~~~~~~v~~lH~~l~~~er~~v~~~f~~g~~kIlvaT~iae~GidIp~v~~VId~g~~k 640 (908)
......+.|+|||+-|+.+.|.+||+..+.|.+-+||||||||++||||+|+||||+|..|
T Consensus 580 ge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAETSLTIPgIkYVVD~Gr~K 659 (1172)
T KOG0926|consen 580 GEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAETSLTIPGIKYVVDCGRVK 659 (1172)
T ss_pred CCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccchhcccccCCeeEEEeccchh
Confidence 0012367899999999999999999999999999999999999999999999999999999
Q ss_pred ceeeccccCccccccccccHhhHHHhccccCCCCCcEEEEecChhhHh-hcCCCCCCccccCchHHHHHHHhhcCCCchh
Q 002552 641 ETSYDALNKLACLLPSWISKASAHQRRGRAGRVQPGVCYKLYPRIIHD-AMLPYQLPEILRTPLQELCLHIKSLQLGTVG 719 (908)
Q Consensus 641 ~~~yd~~~~~~~l~~~~iS~~~~~QR~GRaGR~~~G~~~~l~~~~~~~-~l~~~~~pei~r~~L~~~~L~~~~l~~~~~~ 719 (908)
+..||..+|++++.+.|||+|++-||+|||||.++|+|||||+...|+ .+.++..|||++.|.++++|++|+|++..+.
T Consensus 660 ~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtgpGHcYRLYSSAVf~~~Fe~fS~PEIlk~Pve~lvLqMKsMnI~kVv 739 (1172)
T KOG0926|consen 660 ERLYDSKTGVSSFEVDWISKASADQRAGRAGRTGPGHCYRLYSSAVFSNDFEEFSLPEILKKPVESLVLQMKSMNIDKVV 739 (1172)
T ss_pred hhccccccCceeEEEEeeeccccchhccccCCCCCCceeehhhhHHhhcchhhhccHHHhhCcHHHHHHHHHhcCcccee
Confidence 999999999999999999999999999999999999999999999997 7999999999999999999999999999999
Q ss_pred hhhhccCCCCCHHHHHHHHHHHHHcCCCCCCCCcCccccccccccCCchhhHHHHHhhhccChHHHHHHHhhhccCCCCC
Q 002552 720 SFLSKALQPPDPLAVQNAIELLKTIGALDDMENLTPLGRHLCTLPVDPNIGKMLLMGAIFQCLNPALTIAAALAHRNPFV 799 (908)
Q Consensus 720 ~fl~~~~~~p~~~~v~~al~~L~~~gal~~~~~lT~lG~~~~~lpl~p~~~k~l~~~~~~~c~~~~l~i~a~l~~~~~f~ 799 (908)
+| .|+.||...+++.|...|..+||||.++.||+||+.|+.||+.|+++|||+.+...+|+.-++.++++|++..+|+
T Consensus 740 nF--PFPtpPd~~~L~~Aer~L~~LgALd~~g~lT~lGk~mS~FPlsPrfsKmL~~~~Q~~~lpy~i~lvsaLsv~e~~i 817 (1172)
T KOG0926|consen 740 NF--PFPTPPDRSALEKAERRLKALGALDSNGGLTKLGKAMSLFPLSPRFSKMLATSDQHNLLPYNIALVSALSVYEVLI 817 (1172)
T ss_pred cC--CCCCCccHHHHHHHHHHHHHhccccccCCcccccchhcccccChhHHHHHHHHHhhcchhHHHHHHHHHhccchhh
Confidence 99 8999999999999999999999999999999999999999999999999999999999999999999999998886
Q ss_pred Ccc-------------ccHH-------------------HHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHcCCcHHHHHH
Q 002552 800 LPV-------------NMQK-------------------EVDEAKRSFAGDSCSDHIALLKAFDGYKDAKRNRRERDFCW 847 (908)
Q Consensus 800 ~p~-------------~~~~-------------------~~~~~~~~~~~~~~sD~l~~l~~f~~w~~~~~~~~~~~~c~ 847 (908)
.-. ++++ ...+++.+|. +..||.|+++.|...+..+. +...||.
T Consensus 818 ~~~~ll~n~~~r~~~~eE~d~~~~de~~~d~~~K~~rr~~~~aa~~rf~-~l~sd~l~Ll~Av~a~ey~~---~~~rfc~ 893 (1172)
T KOG0926|consen 818 VAASLLPNPLIREFEPEEKDLIKDDETVEDKELKKRRREKSKAARSRFS-NLDSDALVLLSAVSAAEYAE---NGMRFCE 893 (1172)
T ss_pred hhhhcccccccccCCcchhhccccccccccHHHHHHHHHHHHHHHhhhc-cCCccHHHHHHHHHHHHhhh---hcchhHH
Confidence 311 1110 1122444555 44589999999999998764 3346999
Q ss_pred HhcCCHHHHHHHHHHHHHHHHHHHhC
Q 002552 848 ENFLSPITLQMMEDMRSQFLDLLSDI 873 (908)
Q Consensus 848 ~~~l~~~~l~~~~~~r~ql~~~l~~~ 873 (908)
+|||..++|.++.++|+||..++...
T Consensus 894 ~ngLr~Kam~Ev~KLR~QL~~lv~~~ 919 (1172)
T KOG0926|consen 894 ANGLRLKAMEEVRKLRKQLTNLVNHG 919 (1172)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999998843
No 10
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=4.1e-83 Score=765.43 Aligned_cols=446 Identities=35% Similarity=0.526 Sum_probs=408.3
Q ss_pred CCchHHHHHHHHHHHhCCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCC
Q 002552 281 LPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLGE 360 (908)
Q Consensus 281 lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~~~~~~~g~ 360 (908)
|||+.+..++++++.+++++|++|+|||||||++|+++++... ..++|+|++|||++|.|++++++++++..+|.
T Consensus 1 LPi~~~~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~-----~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~ 75 (819)
T TIGR01970 1 LPIHAVLPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPG-----IGGKIIMLEPRRLAARSAAQRLASQLGEAVGQ 75 (819)
T ss_pred CCchHHHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhc-----cCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCc
Confidence 7999999999999999999999999999999999999998752 24689999999999999999999999999999
Q ss_pred EEeEEeeccccCCCCCcEEEEchHHHHHHHhcCCCCCcceEEEEechhccchhhHHHHHHHHHHCc-cCCCCcEEEeccc
Q 002552 361 TVGYQIRLESKRSAQTRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLP-RRPDLRLILMSAT 439 (908)
Q Consensus 361 ~vg~~~~~~~~~~~~~~Iiv~T~g~Ll~~l~~~~~l~~~~~iIiDEaHeR~~~~d~ll~~lk~~~~-~~~~~qiIlmSAT 439 (908)
.|||.++++...+.+++|+|+|+|+|++++..++.|+++++|||||+|||++++|+++.+++.+.. .++++|+|+||||
T Consensus 76 ~VGy~vr~~~~~s~~t~I~v~T~G~Llr~l~~d~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlqlIlmSAT 155 (819)
T TIGR01970 76 TVGYRVRGENKVSRRTRLEVVTEGILTRMIQDDPELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKILAMSAT 155 (819)
T ss_pred EEEEEEccccccCCCCcEEEECCcHHHHHHhhCcccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceEEEEeCC
Confidence 999999999888888999999999999999998899999999999999999999999888877654 5789999999999
Q ss_pred CChHHHHhhhCCCCccccCCccccceeeehhhHHHhhhcccCcccccccccccccccccchhhhHhhhhhcccccccccc
Q 002552 440 INADLFSKYFGNAPTVHIPGLTFPVTDLFLEDVLEKTRYKMNSKLDSFQGNSRRSRRQDSKKDHLTALFEDVDIDSNYKN 519 (908)
Q Consensus 440 ~~~~~~~~~f~~~~~i~v~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 519 (908)
++.+.+.+||++++++.++|+.|||+++|+.... .+.+.
T Consensus 156 l~~~~l~~~l~~~~vI~~~gr~~pVe~~y~~~~~---------------------------~~~~~-------------- 194 (819)
T TIGR01970 156 LDGERLSSLLPDAPVVESEGRSFPVEIRYLPLRG---------------------------DQRLE-------------- 194 (819)
T ss_pred CCHHHHHHHcCCCcEEEecCcceeeeeEEeecch---------------------------hhhHH--------------
Confidence 9999999999999999999999999988864200 00000
Q ss_pred hhhhhHhhHhhhhhhhhchHHHHHHHHHHHhccCCCcEEEecCCHHHHHHHHHHHHhcccCCCCCceEEEeccCCCChHh
Q 002552 520 YRASTRASLEAWSAEQIDLGLVESTIEYICRHEGDGAILVFLTGWNDISKLLDQIKVNKFLGDPNKFLVLPLHGSMPTIN 599 (908)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lH~~l~~~e 599 (908)
..+...+..++.. ..|++|||||++++|+.+++.|.+... .++.|+++||+|++++
T Consensus 195 -------------------~~v~~~l~~~l~~-~~g~iLVFlpg~~eI~~l~~~L~~~~~----~~~~v~pLHg~L~~~e 250 (819)
T TIGR01970 195 -------------------DAVSRAVEHALAS-ETGSILVFLPGQAEIRRVQEQLAERLD----SDVLICPLYGELSLAA 250 (819)
T ss_pred -------------------HHHHHHHHHHHHh-cCCcEEEEECCHHHHHHHHHHHHhhcC----CCcEEEEecCCCCHHH
Confidence 0022233334332 468999999999999999999976311 3688999999999999
Q ss_pred HHhhhCCCCCCCcEEEEeccccccccCCCCeEEEEeCCCccceeeccccCccccccccccHhhHHHhccccCCCCCcEEE
Q 002552 600 QREIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRVQPGVCY 679 (908)
Q Consensus 600 r~~v~~~f~~g~~kIlvaT~iae~GidIp~v~~VId~g~~k~~~yd~~~~~~~l~~~~iS~~~~~QR~GRaGR~~~G~~~ 679 (908)
|.++++.|++|++||||||||||+|||||+|+||||+|+++...||+.++++.|.+.|||+++|.||+|||||.++|.||
T Consensus 251 q~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~~~G~cy 330 (819)
T TIGR01970 251 QDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITRLETVRISQASATQRAGRAGRLEPGVCY 330 (819)
T ss_pred HHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccccccccccCCceeeEEEECHHHHHhhhhhcCCCCCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecChhhHhhcCCCCCCccccCchHHHHHHHhhcCCCchhhhhhccCCCCCHHHHHHHHHHHHHcCCCCCCCCcCccccc
Q 002552 680 KLYPRIIHDAMLPYQLPEILRTPLQELCLHIKSLQLGTVGSFLSKALQPPDPLAVQNAIELLKTIGALDDMENLTPLGRH 759 (908)
Q Consensus 680 ~l~~~~~~~~l~~~~~pei~r~~L~~~~L~~~~l~~~~~~~fl~~~~~~p~~~~v~~al~~L~~~gal~~~~~lT~lG~~ 759 (908)
+||++++|..|.++..|||++.+|.+++|+++.+++.++.+| .|++||+..++..|++.|..+||||.+++||++|+.
T Consensus 331 rL~t~~~~~~l~~~~~PEI~r~~L~~~~L~l~~~g~~~~~~~--~~l~~P~~~~i~~a~~~L~~lgald~~~~lT~~G~~ 408 (819)
T TIGR01970 331 RLWSEEQHQRLPAQDEPEILQADLSGLALELAQWGAKDPSDL--RWLDAPPSVALAAARQLLQRLGALDAQGRLTAHGKA 408 (819)
T ss_pred EeCCHHHHHhhhcCCCcceeccCcHHHHHHHHHcCCCChhhC--CCCCCcCHHHHHHHHHHHHHCCCCCCCCCcCHHHHH
Confidence 999999999999999999999999999999999999988888 899999999999999999999999999999999999
Q ss_pred cccccCCchhhHHHHHhhhccChHHHHHHHhhhccCCCC
Q 002552 760 LCTLPVDPNIGKMLLMGAIFQCLNPALTIAAALAHRNPF 798 (908)
Q Consensus 760 ~~~lpl~p~~~k~l~~~~~~~c~~~~l~i~a~l~~~~~f 798 (908)
|+.||+||++||||+.|+.++|.+++++|||+|+.++++
T Consensus 409 ~~~lp~~p~l~~~ll~~~~~~~~~~~~~iaa~ls~~~~~ 447 (819)
T TIGR01970 409 MAALGCHPRLAAMLLSAHSTGLAALACDLAALLEERGLP 447 (819)
T ss_pred HHhcCCCHHHHHHHHHhhhcCCHHHHHHHHHHHcCCCCC
Confidence 999999999999999999999999999999999999875
No 11
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=3.4e-80 Score=742.51 Aligned_cols=444 Identities=34% Similarity=0.529 Sum_probs=401.1
Q ss_pred CCCchHHHHHHHHHHHhCCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCC
Q 002552 280 KLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLG 359 (908)
Q Consensus 280 ~lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~~~~~~~g 359 (908)
.|||+.+..++++++.++++++++|+|||||||++|+++++... ..++|+|++|||++|.|++++++++++..+|
T Consensus 3 ~LPi~~~~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~-----~~~~ilvlqPrR~aA~qia~rva~~l~~~~g 77 (812)
T PRK11664 3 SLPVAAVLPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGG-----INGKIIMLEPRRLAARNVAQRLAEQLGEKPG 77 (812)
T ss_pred CCCHHHHHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCC-----cCCeEEEECChHHHHHHHHHHHHHHhCcccC
Confidence 59999999999999999999999999999999999999998642 1358999999999999999999999999999
Q ss_pred CEEeEEeeccccCCCCCcEEEEchHHHHHHHhcCCCCCcceEEEEechhccchhhHHHHHHHHHHCc-cCCCCcEEEecc
Q 002552 360 ETVGYQIRLESKRSAQTRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLP-RRPDLRLILMSA 438 (908)
Q Consensus 360 ~~vg~~~~~~~~~~~~~~Iiv~T~g~Ll~~l~~~~~l~~~~~iIiDEaHeR~~~~d~ll~~lk~~~~-~~~~~qiIlmSA 438 (908)
..|||.++++...+..++|+|+|||+|++++..++.|+++++|||||+|||++++|+++.+++.++. .++++|+|+|||
T Consensus 78 ~~VGy~vr~~~~~~~~t~I~v~T~G~Llr~l~~d~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqlilmSA 157 (812)
T PRK11664 78 ETVGYRMRAESKVGPNTRLEVVTEGILTRMIQRDPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSA 157 (812)
T ss_pred ceEEEEecCccccCCCCcEEEEChhHHHHHHhhCCCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceEEEEec
Confidence 9999999999988888999999999999999999999999999999999999999999988877755 578899999999
Q ss_pred cCChHHHHhhhCCCCccccCCccccceeeehhhHHHhhhcccCcccccccccccccccccchhhhHhhhhhccccccccc
Q 002552 439 TINADLFSKYFGNAPTVHIPGLTFPVTDLFLEDVLEKTRYKMNSKLDSFQGNSRRSRRQDSKKDHLTALFEDVDIDSNYK 518 (908)
Q Consensus 439 T~~~~~~~~~f~~~~~i~v~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 (908)
|++.+.+++||++++++.++|+.|||+++|+.... .+.+.
T Consensus 158 Tl~~~~l~~~~~~~~~I~~~gr~~pV~~~y~~~~~---------------------------~~~~~------------- 197 (812)
T PRK11664 158 TLDNDRLQQLLPDAPVIVSEGRSFPVERRYQPLPA---------------------------HQRFD------------- 197 (812)
T ss_pred CCCHHHHHHhcCCCCEEEecCccccceEEeccCch---------------------------hhhHH-------------
Confidence 99999999999999999999999999998863100 00000
Q ss_pred chhhhhHhhHhhhhhhhhchHHHHHHHHHHHhccCCCcEEEecCCHHHHHHHHHHHHhcccCCCCCceEEEeccCCCChH
Q 002552 519 NYRASTRASLEAWSAEQIDLGLVESTIEYICRHEGDGAILVFLTGWNDISKLLDQIKVNKFLGDPNKFLVLPLHGSMPTI 598 (908)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lH~~l~~~ 598 (908)
..+...+..++. ...|++|||+||+++|+.+++.|..... .++.|.++||+|+++
T Consensus 198 --------------------~~v~~~l~~~l~-~~~g~iLVFlpg~~ei~~l~~~L~~~~~----~~~~v~~Lhg~l~~~ 252 (812)
T PRK11664 198 --------------------EAVARATAELLR-QESGSLLLFLPGVGEIQRVQEQLASRVA----SDVLLCPLYGALSLA 252 (812)
T ss_pred --------------------HHHHHHHHHHHH-hCCCCEEEEcCCHHHHHHHHHHHHHhcc----CCceEEEeeCCCCHH
Confidence 002223333333 2468999999999999999999986211 357899999999999
Q ss_pred hHHhhhCCCCCCCcEEEEeccccccccCCCCeEEEEeCCCccceeeccccCccccccccccHhhHHHhccccCCCCCcEE
Q 002552 599 NQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRVQPGVC 678 (908)
Q Consensus 599 er~~v~~~f~~g~~kIlvaT~iae~GidIp~v~~VId~g~~k~~~yd~~~~~~~l~~~~iS~~~~~QR~GRaGR~~~G~~ 678 (908)
+|+++++.|++|++||||||||||+|||||+|++|||+|+++...||+.++++.|.+.|||+++|.||+|||||.++|.|
T Consensus 253 eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~~~G~c 332 (812)
T PRK11664 253 EQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRLEPGIC 332 (812)
T ss_pred HHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCCcceeEEEeechhhhhhhccccCCCCCcEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecChhhHhhcCCCCCCccccCchHHHHHHHhhcCCCchhhhhhccCCCCCHHHHHHHHHHHHHcCCCCCCCCcCcccc
Q 002552 679 YKLYPRIIHDAMLPYQLPEILRTPLQELCLHIKSLQLGTVGSFLSKALQPPDPLAVQNAIELLKTIGALDDMENLTPLGR 758 (908)
Q Consensus 679 ~~l~~~~~~~~l~~~~~pei~r~~L~~~~L~~~~l~~~~~~~fl~~~~~~p~~~~v~~al~~L~~~gal~~~~~lT~lG~ 758 (908)
|+||++++|..|.++..|||++.+|++++|.++.+|..++.+| .|+|||+..++++|++.|..+||||.+++||++|+
T Consensus 333 yrL~t~~~~~~l~~~~~PEI~r~dL~~~~L~l~~~g~~~~~~~--~~ld~P~~~~~~~A~~~L~~lgald~~g~lT~~G~ 410 (812)
T PRK11664 333 LHLYSKEQAERAAAQSEPEILHSDLSGLLLELLQWGCHDPAQL--SWLDQPPAAALAAAKRLLQQLGALDGQGRLTARGR 410 (812)
T ss_pred EEecCHHHHhhCccCCCCceeccchHHHHHHHHHcCCCCHHhC--CCCCCCCHHHHHHHHHHHHHCCCCCCCCCcCHHHH
Confidence 9999999999999999999999999999999999999888888 89999999999999999999999999999999999
Q ss_pred ccccccCCchhhHHHHHhhhccChH--HHHHHHhhhccC
Q 002552 759 HLCTLPVDPNIGKMLLMGAIFQCLN--PALTIAAALAHR 795 (908)
Q Consensus 759 ~~~~lpl~p~~~k~l~~~~~~~c~~--~~l~i~a~l~~~ 795 (908)
.|+.||++|++|+||+.|+.++|.. .+..|||+|+.+
T Consensus 411 ~m~~lp~~Prla~~ll~a~~~~~~~l~~a~~laall~e~ 449 (812)
T PRK11664 411 KMAALGNDPRLAAMLVAAKEDDEAALATAAKLAAILEEP 449 (812)
T ss_pred HHHhcCCchHHHHHHHHHHhcCchhhHHHHHHHHhhccC
Confidence 9999999999999999999998653 667777777655
No 12
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=100.00 E-value=1.2e-68 Score=597.42 Aligned_cols=606 Identities=41% Similarity=0.724 Sum_probs=527.2
Q ss_pred HhccChhHHHHHHhhcCCCchHHHHHHHHHHHhCCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHH
Q 002552 264 KLKSSDSGKAMLSFREKLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISA 343 (908)
Q Consensus 264 ~~~~~~~~~~~~~~r~~lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la 343 (908)
+......+..+.++|..||+..+.+++++++..+++++|-++|||||||++.++||+....+..+....+.+.||||+.|
T Consensus 360 ~~~~d~e~~~~~a~re~lpva~~~~~i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisa 439 (1282)
T KOG0921|consen 360 RFKRDEALDKITAQREELPVAQYRSEILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISA 439 (1282)
T ss_pred hhhcccchhhhhhhhhhCcHHHHHHHHHHHHhcCceeeEeecccccchhHHHHHHHHHHhhccccccccceeccccccch
Confidence 34556778889999999999999999999999999999999999999999999999999998888788899999999999
Q ss_pred HHHHHHHHHHhCCCCCCEEeEEeeccccCCC-CCcEEEEchHHHHHHHhcCCCCCcceEEEEechhccchhhHHHHHHHH
Q 002552 344 ISVAARVSSERGENLGETVGYQIRLESKRSA-QTRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILR 422 (908)
Q Consensus 344 ~qi~~rv~~~~~~~~g~~vg~~~~~~~~~~~-~~~Iiv~T~g~Ll~~l~~~~~l~~~~~iIiDEaHeR~~~~d~ll~~lk 422 (908)
+.++++|+.+.++.+|.+|||++|+++..+. -..|.+||-|.|++++.+. +..++|+|+||+|||++++||++.+++
T Consensus 440 isiaerva~er~e~~g~tvgy~vRf~Sa~prpyg~i~fctvgvllr~~e~g--lrg~sh~i~deiherdv~~dfll~~lr 517 (1282)
T KOG0921|consen 440 ISLAERVANERGEEVGETCGYNVRFDSATPRPYGSIMFCTVGVLLRMMENG--LRGISHVIIDEIHERDVDTDFVLIVLR 517 (1282)
T ss_pred HHHHHHHHHhhHHhhcccccccccccccccccccceeeeccchhhhhhhhc--ccccccccchhhhhhccchHHHHHHHH
Confidence 9999999999999999999999999998753 5679999999999999764 678999999999999999999999999
Q ss_pred HHCccCCCCcEEEecccCChHHHHhhhCCCCccccCCccccceeeehhhHHHhhhcccCcccccccccccccccccchhh
Q 002552 423 DLLPRRPDLRLILMSATINADLFSKYFGNAPTVHIPGLTFPVTDLFLEDVLEKTRYKMNSKLDSFQGNSRRSRRQDSKKD 502 (908)
Q Consensus 423 ~~~~~~~~~qiIlmSAT~~~~~~~~~f~~~~~i~v~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (908)
.+....+++++++||||+|.+.|..||+.+|.+.+.++.+|+..+|+++++..+.+........-... .....+..+.|
T Consensus 518 ~m~~ty~dl~v~lmsatIdTd~f~~~f~~~p~~~~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~-~~~~~~~~~dd 596 (1282)
T KOG0921|consen 518 EMISTYRDLRVVLMSATIDTDLFTNFFSSIPDVTVHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKK-DDDEEDEEVDD 596 (1282)
T ss_pred hhhccchhhhhhhhhcccchhhhhhhhccccceeeccccccHHHHHHHHhhhhhhccCCCcCccchhh-cccccCchhhh
Confidence 99999999999999999999999999999999999999999999999999877665443211100000 00000000000
Q ss_pred hHhhhhhcccccccccchhhhhHhhHhhhhhhhhchHHHHHHHHHHHhccCCCcEEEecCCHHHHHHHHHHHHhcccCCC
Q 002552 503 HLTALFEDVDIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICRHEGDGAILVFLTGWNDISKLLDQIKVNKFLGD 582 (908)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~~~ 582 (908)
+- ++.+. .....|...++..+...+...+.+.++.+++.+|....-.|.||||+|++..+..|..+|......++
T Consensus 597 K~----~n~n~-~~dd~~~~~~~~am~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~ 671 (1282)
T KOG0921|consen 597 KG----RNMNI-LCDPSYNESTRTAMSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQ 671 (1282)
T ss_pred cc----ccccc-ccChhhcchhhhhhhcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhcc
Confidence 00 00000 01123444555555556667778889999999998888899999999999999999999998888888
Q ss_pred CCceEEEeccCCCChHhHHhhhCCCCCCCcEEEEeccccccccCCCCeEEEEeCCCccceeeccccCccccccccccHhh
Q 002552 583 PNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETSYDALNKLACLLPSWISKAS 662 (908)
Q Consensus 583 ~~~~~v~~lH~~l~~~er~~v~~~f~~g~~kIlvaT~iae~GidIp~v~~VId~g~~k~~~yd~~~~~~~l~~~~iS~~~ 662 (908)
...+.++++|+.++..+|.+|++..+.|+.|+|++|+++++++||.++.+|||.+..+.+.|-..+++....++|.|+-+
T Consensus 672 ~~~y~ilp~Hsq~~~~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn 751 (1282)
T KOG0921|consen 672 ANKYEILPLHSQLTSQEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTN 751 (1282)
T ss_pred chhcccccchhhcccHhhhhccCcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccc
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccccCCCCCcEEEEecChhhHhhcCCCCCCccccCchHHHHHHHhhcCCCchhhhhhccCCCCCHHHHHHHHHHHH
Q 002552 663 AHQRRGRAGRVQPGVCYKLYPRIIHDAMLPYQLPEILRTPLQELCLHIKSLQLGTVGSFLSKALQPPDPLAVQNAIELLK 742 (908)
Q Consensus 663 ~~QR~GRaGR~~~G~~~~l~~~~~~~~l~~~~~pei~r~~L~~~~L~~~~l~~~~~~~fl~~~~~~p~~~~v~~al~~L~ 742 (908)
.+||.||+||.++|.||++.++..|+.+..+..||+.+++|.+..|.+|.+.+..+..|+...+.||+.+++..+-..|.
T Consensus 752 ~eqr~gr~grvR~G~~f~lcs~arF~~l~~~~t~em~r~plhemalTikll~l~SI~~fl~kal~~~p~dav~e~e~~l~ 831 (1282)
T KOG0921|consen 752 LEQRKGRAGRVRPGFCFHLCSRARFEALEDHGTAEMFRTPLHEIALTIKLLRLGSIGEFLGKALQPPPYDAVIEAEAVLR 831 (1282)
T ss_pred hHhhcccCceecccccccccHHHHHHHHHhcCcHhhhcCccHHHHhhHHHHHhhhHHHHHhhccCCCchhhccCchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCCCCCCcCccccccccccCCchhhHHHHHhhhccChHHHHHHHhhhccCCCCCCccccHHHHHHHHHhhcCCCCCc
Q 002552 743 TIGALDDMENLTPLGRHLCTLPVDPNIGKMLLMGAIFQCLNPALTIAAALAHRNPFVLPVNMQKEVDEAKRSFAGDSCSD 822 (908)
Q Consensus 743 ~~gal~~~~~lT~lG~~~~~lpl~p~~~k~l~~~~~~~c~~~~l~i~a~l~~~~~f~~p~~~~~~~~~~~~~~~~~~~sD 822 (908)
.++++|.++.+|+||+.++.+|+.|.++||++.+..++|.+-+..+|+.+++..+|+.-..........++.|++..+||
T Consensus 832 ~m~~ld~n~elt~lg~~la~l~iep~~~k~~~lg~~~g~~~~m~~~as~~s~~~~~~~~~~~~~rl~g~q~~~~g~kfsd 911 (1282)
T KOG0921|consen 832 EMGALDANDELTPLGRMLARLPIEPRIGKMMILGTALGAGSVMCDVASAMSFPTPFVPREKHHSRLSGTQRKFAGNKFSD 911 (1282)
T ss_pred HhhhhhccCcccchhhhhhhccCcccccceeeechhhccchhhhhhhcccccccccccccccccccccchhhcccccccc
Confidence 99999999999999999999999999999999999999999999999999998888753333333444556677777777
Q ss_pred HHHHHHHHHHHHHHHcC--CcHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhCCCCc
Q 002552 823 HIALLKAFDGYKDAKRN--RRERDFCWENFLSPITLQMMEDMRSQFLDLLSDIGFVD 877 (908)
Q Consensus 823 ~l~~l~~f~~w~~~~~~--~~~~~~c~~~~l~~~~l~~~~~~r~ql~~~l~~~~~~~ 877 (908)
|.++..+-+.|..+... ..+++||..+.++...|.+...++.||+++|+.++|+.
T Consensus 912 hva~~~v~q~~r~~~q~ga~~e~efc~r~~l~~~~~~~t~~a~~ql~d~L~q~~fpe 968 (1282)
T KOG0921|consen 912 HVAIVSVIQGYREAVQMGAAAEREFCERYSLSNPVLKMTDGARRQLIDVLRQCSFPE 968 (1282)
T ss_pred chhhhhhhhhhHHHhhhhhhhhhhHhHhhhhcchhhhhhhhhHHHHHHHHHhccCcc
Confidence 77777776666655322 23689999999999999999999999999999998875
No 13
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=3e-58 Score=538.84 Aligned_cols=402 Identities=22% Similarity=0.349 Sum_probs=309.7
Q ss_pred HHHHHHHHHHHhCCeEEEEecCCCCccchHHHHHHHH-----HHhc-----cCCCCcEEEEEcccHHHHHHHHHHHHHHh
Q 002552 285 KMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEE-----ELSS-----LRGADCNIICTQPRRISAISVAARVSSER 354 (908)
Q Consensus 285 ~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~~~~il~~-----~~~~-----~~~~~~~ilv~~P~r~la~qi~~rv~~~~ 354 (908)
.+|+++++.+++++++|++|+||||||+|+||++++. .+.. .....++|+|++|||+||.|++.++.+..
T Consensus 167 ~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi~~~i~~~v 246 (675)
T PHA02653 167 DVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLHSITLLKSL 246 (675)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHHHHHHHHHh
Confidence 4799999999999999999999999999999999874 1221 12235689999999999999999998876
Q ss_pred CCCCCCEEeEEeecccc-------CCCCCcEEEEchHHHHHHHhcCCCCCcceEEEEechhccchhhHHHHHHHHHHCcc
Q 002552 355 GENLGETVGYQIRLESK-------RSAQTRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPR 427 (908)
Q Consensus 355 ~~~~g~~vg~~~~~~~~-------~~~~~~Iiv~T~g~Ll~~l~~~~~l~~~~~iIiDEaHeR~~~~d~ll~~lk~~~~~ 427 (908)
+......+...+++... .....+|+++|++..+ +.|+++++|||||||||..++|+++.+++.+...
T Consensus 247 g~~~~~g~~v~v~~Gg~~~~~~~t~~k~~~Ilv~T~~L~l------~~L~~v~~VVIDEaHEr~~~~DllL~llk~~~~~ 320 (675)
T PHA02653 247 GFDEIDGSPISLKYGSIPDELINTNPKPYGLVFSTHKLTL------NKLFDYGTVIIDEVHEHDQIGDIIIAVARKHIDK 320 (675)
T ss_pred CccccCCceEEEEECCcchHHhhcccCCCCEEEEeCcccc------cccccCCEEEccccccCccchhHHHHHHHHhhhh
Confidence 64211111122222211 1235689999987422 3678999999999999999999999998876543
Q ss_pred CCCCcEEEecccCCh--HHHHhhhCCCCccccCCcc-ccceeeehhhHHHhhhcccCcccccccccccccccccchhhhH
Q 002552 428 RPDLRLILMSATINA--DLFSKYFGNAPTVHIPGLT-FPVTDLFLEDVLEKTRYKMNSKLDSFQGNSRRSRRQDSKKDHL 504 (908)
Q Consensus 428 ~~~~qiIlmSAT~~~--~~~~~~f~~~~~i~v~~~~-~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (908)
. .|+++||||++. +.|.+||++++.+.++++. +||+++|+++.... . ...+.+
T Consensus 321 ~--rq~ILmSATl~~dv~~l~~~~~~p~~I~I~grt~~pV~~~yi~~~~~~-----~-----------------~~~~y~ 376 (675)
T PHA02653 321 I--RSLFLMTATLEDDRDRIKEFFPNPAFVHIPGGTLFPISEVYVKNKYNP-----K-----------------NKRAYI 376 (675)
T ss_pred c--CEEEEEccCCcHhHHHHHHHhcCCcEEEeCCCcCCCeEEEEeecCccc-----c-----------------cchhhh
Confidence 2 489999999964 4789999999999999985 99999987542100 0 000000
Q ss_pred hhhhhcccccccccchhhhhHhhHhhhhhhhhchHHHHHHHHHHHh--ccCCCcEEEecCCHHHHHHHHHHHHhcccCCC
Q 002552 505 TALFEDVDIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICR--HEGDGAILVFLTGWNDISKLLDQIKVNKFLGD 582 (908)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~--~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~~~ 582 (908)
+ . ....++..+.. ...++++||||||+++|+.+++.|.+..
T Consensus 377 ----~-------------~----------------~k~~~l~~L~~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~---- 419 (675)
T PHA02653 377 ----E-------------E----------------EKKNIVTALKKYTPPKGSSGIVFVASVSQCEEYKKYLEKRL---- 419 (675)
T ss_pred ----H-------------H----------------HHHHHHHHHHHhhcccCCcEEEEECcHHHHHHHHHHHHhhc----
Confidence 0 0 00111222221 1245789999999999999999998631
Q ss_pred CCceEEEeccCCCChHhHHhhhCCC-CCCCcEEEEeccccccccCCCCeEEEEeCCCccceeeccccCccccccccccHh
Q 002552 583 PNKFLVLPLHGSMPTINQREIFDRP-PPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETSYDALNKLACLLPSWISKA 661 (908)
Q Consensus 583 ~~~~~v~~lH~~l~~~er~~v~~~f-~~g~~kIlvaT~iae~GidIp~v~~VId~g~~k~~~yd~~~~~~~l~~~~iS~~ 661 (908)
.++.+.++||+|++.+ ++++.| ++|+++|||||||||||||||+|++|||+|+++... +..++ ..|||++
T Consensus 420 -~~~~v~~LHG~Lsq~e--q~l~~ff~~gk~kILVATdIAERGIDIp~V~~VID~G~~k~p~--~~~g~----~~~iSka 490 (675)
T PHA02653 420 -PIYDFYIIHGKVPNID--EILEKVYSSKNPSIIISTPYLESSVTIRNATHVYDTGRVYVPE--PFGGK----EMFISKS 490 (675)
T ss_pred -CCceEEeccCCcCHHH--HHHHHHhccCceeEEeccChhhccccccCeeEEEECCCccCCC--cccCc----ccccCHH
Confidence 2578999999999864 344555 789999999999999999999999999999776542 33332 4699999
Q ss_pred hHHHhccccCCCCCcEEEEecChhhHhhcCCCCCCccccCc---hHHHHHHHhhcCCCchhhhhhccCCCCCHHHHHHHH
Q 002552 662 SAHQRRGRAGRVQPGVCYKLYPRIIHDAMLPYQLPEILRTP---LQELCLHIKSLQLGTVGSFLSKALQPPDPLAVQNAI 738 (908)
Q Consensus 662 ~~~QR~GRaGR~~~G~~~~l~~~~~~~~l~~~~~pei~r~~---L~~~~L~~~~l~~~~~~~fl~~~~~~p~~~~v~~al 738 (908)
+|+||+|||||.++|.||+||+++++ .| |.+.+ |.+++|+++++|++... ++ |++||+..++..|+
T Consensus 491 sa~QRaGRAGR~~~G~c~rLyt~~~~-------~p-I~ri~~~~L~~~vL~lk~~g~~~~~-~~--~ldpP~~~~l~~A~ 559 (675)
T PHA02653 491 MRTQRKGRVGRVSPGTYVYFYDLDLL-------KP-IKRIDSEFLHNYILYAKYFNLTLPE-DL--FVIPSNLDRLRKTE 559 (675)
T ss_pred HHHHhccCcCCCCCCeEEEEECHHHh-------HH-HHHHhHHHHHHHHHHHHHcCCCCcc-cc--cCCCCCHHHHHHHH
Confidence 99999999999999999999999864 23 55555 88999999999996544 43 89999999999999
Q ss_pred HHHHHcCCCCCCCCcCcc--ccccccccCCchhhHHHHHhhhc
Q 002552 739 ELLKTIGALDDMENLTPL--GRHLCTLPVDPNIGKMLLMGAIF 779 (908)
Q Consensus 739 ~~L~~~gal~~~~~lT~l--G~~~~~lpl~p~~~k~l~~~~~~ 779 (908)
+.|..+||+|+ +||.| |+.++.+ ++||++++|+..
T Consensus 560 ~~L~~lga~~~--~l~~l~~~~~~~~~----~~~k~~~~g~~~ 596 (675)
T PHA02653 560 EYIDSFNISIE--KWYEILSNYYVNML----EYAKIYVKGGIL 596 (675)
T ss_pred HHHHHcCCCch--hhhhhhccccHHHH----HHhHHHhcccHh
Confidence 99999998865 79999 9999999 999999998653
No 14
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.5e-51 Score=456.25 Aligned_cols=344 Identities=19% Similarity=0.253 Sum_probs=271.4
Q ss_pred HHHHhccChhHHHHHHhhcCCCchHHHHHHHHHHHhCCeEEEEecCCCCccchHHHHHHHHHHhc----cCCCCcEEEEE
Q 002552 261 RQEKLKSSDSGKAMLSFREKLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSS----LRGADCNIICT 336 (908)
Q Consensus 261 ~~~~~~~~~~~~~~~~~r~~lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~~~~il~~~~~~----~~~~~~~ilv~ 336 (908)
.++.+..+.....+++.+..--++++|.+.|+.+++|++++..|.||||||++|.+|++.++... .++..+.+||+
T Consensus 92 ~f~~~~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL 171 (519)
T KOG0331|consen 92 AFQELGLSEELMKALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVL 171 (519)
T ss_pred hhhcccccHHHHHHHHhcCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEE
Confidence 56677778888888888888899999999999999999999999999999999999999988751 24457889999
Q ss_pred cccHHHHHHHHHHHHHHhCCCCC--CEEeEE----eeccccCCCCCcEEEEchHHHHHHHhcCC-CCCcceEEEEechhc
Q 002552 337 QPRRISAISVAARVSSERGENLG--ETVGYQ----IRLESKRSAQTRLLFCTTGVLLRQLVEDP-DLSCVSHLLVDEIHE 409 (908)
Q Consensus 337 ~P~r~la~qi~~rv~~~~~~~~g--~~vg~~----~~~~~~~~~~~~Iiv~T~g~Ll~~l~~~~-~l~~~~~iIiDEaHe 409 (908)
+||||||.|+.+.+.+. +..++ ..+-|. -.+......+.+|+|+|||+|++++..+. .|++++|+|+||||
T Consensus 172 ~PTRELA~QV~~~~~~~-~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEAD- 249 (519)
T KOG0331|consen 172 APTRELAVQVQAEAREF-GKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEAD- 249 (519)
T ss_pred cCcHHHHHHHHHHHHHH-cCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEeccHH-
Confidence 99999999998877554 44443 333332 12233445689999999999999999887 89999999999999
Q ss_pred cchhhHHHHHHHHHHCcc-CCCCcEEEecccCChHH--H-HhhhCCCCccccCCccccceeeehhhHHHhhhcccCcccc
Q 002552 410 RGMNEDFLLIILRDLLPR-RPDLRLILMSATINADL--F-SKYFGNAPTVHIPGLTFPVTDLFLEDVLEKTRYKMNSKLD 485 (908)
Q Consensus 410 R~~~~d~ll~~lk~~~~~-~~~~qiIlmSAT~~~~~--~-~~~f~~~~~i~v~~~~~~v~~~~l~~~~~~~~~~~~~~~~ 485 (908)
||++++|...+.+++.+. +++.|+|++||||+.+. + .+|+.+...+.+.+. .+..
T Consensus 250 rMldmGFe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~---------~~~~------------ 308 (519)
T KOG0331|consen 250 RMLDMGFEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNK---------KELK------------ 308 (519)
T ss_pred hhhccccHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhcCceEEEecch---------hhhh------------
Confidence 999999999999999888 67778999999998874 3 455553322222111 0000
Q ss_pred cccccccccccccchhhhHhhhhhcccccccccchhhhhHhhHhhhhhhhhchHHHHHHHHHHHhccCCCcEEEecCCHH
Q 002552 486 SFQGNSRRSRRQDSKKDHLTALFEDVDIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICRHEGDGAILVFLTGWN 565 (908)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~~~~g~iLVF~~~~~ 565 (908)
....+.++.+..+. .-....+..++..+. ....+++||||.|++
T Consensus 309 --------------a~~~i~qive~~~~---------------------~~K~~~l~~lL~~~~-~~~~~KvIIFc~tkr 352 (519)
T KOG0331|consen 309 --------------ANHNIRQIVEVCDE---------------------TAKLRKLGKLLEDIS-SDSEGKVIIFCETKR 352 (519)
T ss_pred --------------hhcchhhhhhhcCH---------------------HHHHHHHHHHHHHHh-ccCCCcEEEEecchh
Confidence 00011111111110 001122445555555 456789999999999
Q ss_pred HHHHHHHHHHhcccCCCCCceEEEeccCCCChHhHHhhhCCCCCCCcEEEEeccccccccCCCCeEEEEeCCCccceeec
Q 002552 566 DISKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETSYD 645 (908)
Q Consensus 566 ~i~~l~~~L~~~~~~~~~~~~~v~~lH~~l~~~er~~v~~~f~~g~~kIlvaT~iae~GidIp~v~~VId~g~~k~~~yd 645 (908)
.|++|+..|.. ..+.+.++||+++|.||+.+++.|++|+.+||||||+|+||||||+|++||||++|+
T Consensus 353 ~~~~l~~~l~~-------~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV~lVInydfP~----- 420 (519)
T KOG0331|consen 353 TCDELARNLRR-------KGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDVDLVINYDFPN----- 420 (519)
T ss_pred hHHHHHHHHHh-------cCcceeeecccccHHHHHHHHHhcccCCcceEEEcccccccCCCccccEEEeCCCCC-----
Confidence 99999999987 457899999999999999999999999999999999999999999999999999999
Q ss_pred cccCccccccccccHhhHHHhccccCCC-CCcEEEEecChhhHh
Q 002552 646 ALNKLACLLPSWISKASAHQRRGRAGRV-QPGVCYKLYPRIIHD 688 (908)
Q Consensus 646 ~~~~~~~l~~~~iS~~~~~QR~GRaGR~-~~G~~~~l~~~~~~~ 688 (908)
+.++|+||+|||||+ +.|.+|.||+...+.
T Consensus 421 -------------~vEdYVHRiGRTGRa~~~G~A~tfft~~~~~ 451 (519)
T KOG0331|consen 421 -------------NVEDYVHRIGRTGRAGKKGTAITFFTSDNAK 451 (519)
T ss_pred -------------CHHHHHhhcCccccCCCCceEEEEEeHHHHH
Confidence 555999999999998 789999999987653
No 15
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.7e-48 Score=402.30 Aligned_cols=327 Identities=20% Similarity=0.234 Sum_probs=254.1
Q ss_pred cChhHHHHHHhhcCCCchHHHHHHHHHHHhCCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHH
Q 002552 267 SSDSGKAMLSFREKLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISV 346 (908)
Q Consensus 267 ~~~~~~~~~~~r~~lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi 346 (908)
..+.+-+.++.-...-++++|.++||.++.|+++|+.|+||||||.+|.+||++.++.+.+ ...++|+.||||||.||
T Consensus 68 v~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~--~~~~lVLtPtRELA~QI 145 (476)
T KOG0330|consen 68 VHPELLEACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEPK--LFFALVLTPTRELAQQI 145 (476)
T ss_pred cCHHHHHHHHHhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCCC--CceEEEecCcHHHHHHH
Confidence 3334434444444556788999999999999999999999999999999999999987543 47899999999999999
Q ss_pred HHHHHHHhCCCCCCEEeEEeeccc------cCCCCCcEEEEchHHHHHHHhcCC--CCCcceEEEEechhccchhhHHHH
Q 002552 347 AARVSSERGENLGETVGYQIRLES------KRSAQTRLLFCTTGVLLRQLVEDP--DLSCVSHLLVDEIHERGMNEDFLL 418 (908)
Q Consensus 347 ~~rv~~~~~~~~g~~vg~~~~~~~------~~~~~~~Iiv~T~g~Ll~~l~~~~--~l~~~~~iIiDEaHeR~~~~d~ll 418 (908)
++.+ +.++...|..+..-+...+ ...+.++|+|+|||+|.+++.+.. .|++++++|+|||| |-+++||..
T Consensus 146 ~e~f-e~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEAD-rlLd~dF~~ 223 (476)
T KOG0330|consen 146 AEQF-EALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEAD-RLLDMDFEE 223 (476)
T ss_pred HHHH-HHhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhchHH-hhhhhhhHH
Confidence 9877 4456666665544443322 345689999999999999998544 89999999999999 999999998
Q ss_pred HHHHHHCccCCCCcEEEecccCChHH--HH-hhhCCCCccccCCccccceeeehhhHHHhhhcccCcccccccccccccc
Q 002552 419 IILRDLLPRRPDLRLILMSATINADL--FS-KYFGNAPTVHIPGLTFPVTDLFLEDVLEKTRYKMNSKLDSFQGNSRRSR 495 (908)
Q Consensus 419 ~~lk~~~~~~~~~qiIlmSAT~~~~~--~~-~~f~~~~~i~v~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (908)
.+-+++...+++.|++++|||++.+. +. .-+.++..+.+.....-|
T Consensus 224 ~ld~ILk~ip~erqt~LfsATMt~kv~kL~rasl~~p~~v~~s~ky~tv------------------------------- 272 (476)
T KOG0330|consen 224 ELDYILKVIPRERQTFLFSATMTKKVRKLQRASLDNPVKVAVSSKYQTV------------------------------- 272 (476)
T ss_pred HHHHHHHhcCccceEEEEEeecchhhHHHHhhccCCCeEEeccchhcch-------------------------------
Confidence 88777777778999999999997653 33 222222222222111100
Q ss_pred cccchhhhHhhhhhcccccccccchhhhhHhhHhhhhhhhhchHHHHHHHHHHHhccCCCcEEEecCCHHHHHHHHHHHH
Q 002552 496 RQDSKKDHLTALFEDVDIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICRHEGDGAILVFLTGWNDISKLLDQIK 575 (908)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~~~~g~iLVF~~~~~~i~~l~~~L~ 575 (908)
+.+.+.|-- +........+.+|++...++.+||||++....+.++-.|.
T Consensus 273 ------~~lkQ~ylf-------------------------v~~k~K~~yLV~ll~e~~g~s~iVF~~t~~tt~~la~~L~ 321 (476)
T KOG0330|consen 273 ------DHLKQTYLF-------------------------VPGKDKDTYLVYLLNELAGNSVIVFCNTCNTTRFLALLLR 321 (476)
T ss_pred ------HHhhhheEe-------------------------ccccccchhHHHHHHhhcCCcEEEEEeccchHHHHHHHHH
Confidence 011111000 0000112334455555667899999999999999999998
Q ss_pred hcccCCCCCceEEEeccCCCChHhHHhhhCCCCCCCcEEEEeccccccccCCCCeEEEEeCCCccceeeccccCcccccc
Q 002552 576 VNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETSYDALNKLACLLP 655 (908)
Q Consensus 576 ~~~~~~~~~~~~v~~lH~~l~~~er~~v~~~f~~g~~kIlvaT~iae~GidIp~v~~VId~g~~k~~~yd~~~~~~~l~~ 655 (908)
. .++...++||+|++..|..+|+.|++|.+.||||||||+||+|||.|++|||||+|....
T Consensus 322 ~-------lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~VVNyDiP~~sk------------ 382 (476)
T KOG0330|consen 322 N-------LGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVDVVVNYDIPTHSK------------ 382 (476)
T ss_pred h-------cCcceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCceEEEecCCCCcHH------------
Confidence 7 678899999999999999999999999999999999999999999999999999999444
Q ss_pred ccccHhhHHHhccccCCC-CCcEEEEecCh
Q 002552 656 SWISKASAHQRRGRAGRV-QPGVCYKLYPR 684 (908)
Q Consensus 656 ~~iS~~~~~QR~GRaGR~-~~G~~~~l~~~ 684 (908)
+|+||+||+||+ ++|.++.|.+.
T Consensus 383 ------DYIHRvGRtaRaGrsG~~ItlVtq 406 (476)
T KOG0330|consen 383 ------DYIHRVGRTARAGRSGKAITLVTQ 406 (476)
T ss_pred ------HHHHHcccccccCCCcceEEEEeh
Confidence 999999999999 78999999998
No 16
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=1e-46 Score=441.29 Aligned_cols=327 Identities=19% Similarity=0.231 Sum_probs=242.8
Q ss_pred HHhhcCCCchHHHHHHHHHHHhCCeEEEEecCCCCccchHHHHHHHHHHhcc---CCCCcEEEEEcccHHHHHHHHHHHH
Q 002552 275 LSFREKLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSL---RGADCNIICTQPRRISAISVAARVS 351 (908)
Q Consensus 275 ~~~r~~lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~~~~il~~~~~~~---~~~~~~ilv~~P~r~la~qi~~rv~ 351 (908)
++......++++|.++|+.+++++++|++||||||||+++.++++.++.... .+..+.+||++|||+||.|+.+.+.
T Consensus 145 l~~~g~~~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~PTreLa~Qi~~~~~ 224 (545)
T PTZ00110 145 LKNAGFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLAPTRELAEQIREQCN 224 (545)
T ss_pred HHHCCCCCCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEECChHHHHHHHHHHHH
Confidence 3334445678899999999999999999999999999999999988765432 2335689999999999999998886
Q ss_pred HHhCCCCCCEE--eEEee----ccccCCCCCcEEEEchHHHHHHHhcCC-CCCcceEEEEechhccchhhHHHHHHHHHH
Q 002552 352 SERGENLGETV--GYQIR----LESKRSAQTRLLFCTTGVLLRQLVEDP-DLSCVSHLLVDEIHERGMNEDFLLIILRDL 424 (908)
Q Consensus 352 ~~~~~~~g~~v--g~~~~----~~~~~~~~~~Iiv~T~g~Ll~~l~~~~-~l~~~~~iIiDEaHeR~~~~d~ll~~lk~~ 424 (908)
+... ..+..+ .|.-. .......+++|+|+|||+|++++..+. .|.++++||||||| |+++++|...+.+.+
T Consensus 225 ~~~~-~~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDEAd-~mld~gf~~~i~~il 302 (545)
T PTZ00110 225 KFGA-SSKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNVTNLRRVTYLVLDEAD-RMLDMGFEPQIRKIV 302 (545)
T ss_pred HHhc-ccCccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCCCChhhCcEEEeehHH-hhhhcchHHHHHHHH
Confidence 6532 222222 22110 011123468999999999999998765 79999999999999 789999988887777
Q ss_pred CccCCCCcEEEecccCChHH--HHh-hhCCCCc-cccCCccccceeeehhhHHHhhhcccCcccccccccccccccccch
Q 002552 425 LPRRPDLRLILMSATINADL--FSK-YFGNAPT-VHIPGLTFPVTDLFLEDVLEKTRYKMNSKLDSFQGNSRRSRRQDSK 500 (908)
Q Consensus 425 ~~~~~~~qiIlmSAT~~~~~--~~~-~f~~~~~-i~v~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (908)
...+++.|+|+||||++.+. +.+ ++...++ +.+....... ...+..
T Consensus 303 ~~~~~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~-------------------~~~i~q----------- 352 (545)
T PTZ00110 303 SQIRPDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTA-------------------CHNIKQ----------- 352 (545)
T ss_pred HhCCCCCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCcccc-------------------CCCeeE-----------
Confidence 77788999999999997653 333 3332222 1111000000 000000
Q ss_pred hhhHhhhhhcccccccccchhhhhHhhHhhhhhhhhchHHHHHHHHHHHhccCCCcEEEecCCHHHHHHHHHHHHhcccC
Q 002552 501 KDHLTALFEDVDIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICRHEGDGAILVFLTGWNDISKLLDQIKVNKFL 580 (908)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~ 580 (908)
.+... . +......+..++..+.. ..+++||||++++.++.+++.|..
T Consensus 353 ------~~~~~--~-------------------~~~k~~~L~~ll~~~~~--~~~k~LIF~~t~~~a~~l~~~L~~---- 399 (545)
T PTZ00110 353 ------EVFVV--E-------------------EHEKRGKLKMLLQRIMR--DGDKILIFVETKKGADFLTKELRL---- 399 (545)
T ss_pred ------EEEEE--e-------------------chhHHHHHHHHHHHhcc--cCCeEEEEecChHHHHHHHHHHHH----
Confidence 00000 0 00000112233333322 467999999999999999999986
Q ss_pred CCCCceEEEeccCCCChHhHHhhhCCCCCCCcEEEEeccccccccCCCCeEEEEeCCCccceeeccccCccccccccccH
Q 002552 581 GDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETSYDALNKLACLLPSWISK 660 (908)
Q Consensus 581 ~~~~~~~v~~lH~~l~~~er~~v~~~f~~g~~kIlvaT~iae~GidIp~v~~VId~g~~k~~~yd~~~~~~~l~~~~iS~ 660 (908)
.++.+..+||++++++|+++++.|++|+.+|||||+++++|||||+|++||++|+|. +.
T Consensus 400 ---~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~~VI~~d~P~------------------s~ 458 (545)
T PTZ00110 400 ---DGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVKYVINFDFPN------------------QI 458 (545)
T ss_pred ---cCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCCEEEEeCCCC------------------CH
Confidence 456788999999999999999999999999999999999999999999999999998 66
Q ss_pred hhHHHhccccCCC-CCcEEEEecChhhH
Q 002552 661 ASAHQRRGRAGRV-QPGVCYKLYPRIIH 687 (908)
Q Consensus 661 ~~~~QR~GRaGR~-~~G~~~~l~~~~~~ 687 (908)
++|+||+|||||. ..|.||.||++++.
T Consensus 459 ~~yvqRiGRtGR~G~~G~ai~~~~~~~~ 486 (545)
T PTZ00110 459 EDYVHRIGRTGRAGAKGASYTFLTPDKY 486 (545)
T ss_pred HHHHHHhcccccCCCCceEEEEECcchH
Confidence 7999999999999 78999999998654
No 17
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=1.1e-44 Score=437.91 Aligned_cols=521 Identities=17% Similarity=0.146 Sum_probs=344.1
Q ss_pred hhHHHHHHhhcCCCchHHHHHHHHHHHhCCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHH
Q 002552 269 DSGKAMLSFREKLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAA 348 (908)
Q Consensus 269 ~~~~~~~~~r~~lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~ 348 (908)
+.+.+.++.+ ...++++|.++++.+.++++++++||||||||+++.+++++.+.. +.++++++|+|+||.|+++
T Consensus 10 ~~~~~~~~~~-~~~l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~-----~~k~v~i~P~raLa~q~~~ 83 (674)
T PRK01172 10 DEFLNLFTGN-DFELYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLA-----GLKSIYIVPLRSLAMEKYE 83 (674)
T ss_pred HHHHHHHhhC-CCCCCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHh-----CCcEEEEechHHHHHHHHH
Confidence 3333444333 345799999999999999999999999999999999999887643 3478888999999999999
Q ss_pred HHHHHhCCCCCCEEeEEeecccc---CCCCCcEEEEchHHHHHHHhcCC-CCCcceEEEEechhccc--hhhHHHHHHHH
Q 002552 349 RVSSERGENLGETVGYQIRLESK---RSAQTRLLFCTTGVLLRQLVEDP-DLSCVSHLLVDEIHERG--MNEDFLLIILR 422 (908)
Q Consensus 349 rv~~~~~~~~g~~vg~~~~~~~~---~~~~~~Iiv~T~g~Ll~~l~~~~-~l~~~~~iIiDEaHeR~--~~~d~ll~~lk 422 (908)
++.+.. ..|..|+..+..... ....++|+|+||+++..++.+++ .+.++++|||||||+.+ -....+..++.
T Consensus 84 ~~~~l~--~~g~~v~~~~G~~~~~~~~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l~d~~rg~~le~ll~ 161 (674)
T PRK01172 84 ELSRLR--SLGMRVKISIGDYDDPPDFIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHIIGDEDRGPTLETVLS 161 (674)
T ss_pred HHHHHh--hcCCeEEEEeCCCCCChhhhccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhccCCCccHHHHHHHH
Confidence 987642 345666655443221 12467999999999998888776 68999999999999542 11123334445
Q ss_pred HHCccCCCCcEEEecccC-ChHHHHhhhCCCCccccCCccccceeeehhhHHHhhhcccCcccccccccccccccccchh
Q 002552 423 DLLPRRPDLRLILMSATI-NADLFSKYFGNAPTVHIPGLTFPVTDLFLEDVLEKTRYKMNSKLDSFQGNSRRSRRQDSKK 501 (908)
Q Consensus 423 ~~~~~~~~~qiIlmSAT~-~~~~~~~~f~~~~~i~v~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (908)
.+...++++|+|+||||+ +.+.+++|++. ..+....+..|+........ . .+... ...
T Consensus 162 ~~~~~~~~~riI~lSATl~n~~~la~wl~~-~~~~~~~r~vpl~~~i~~~~----~--------~~~~~-------~~~- 220 (674)
T PRK01172 162 SARYVNPDARILALSATVSNANELAQWLNA-SLIKSNFRPVPLKLGILYRK----R--------LILDG-------YER- 220 (674)
T ss_pred HHHhcCcCCcEEEEeCccCCHHHHHHHhCC-CccCCCCCCCCeEEEEEecC----e--------eeecc-------ccc-
Confidence 454556789999999999 67789999964 34555556666553221000 0 00000 000
Q ss_pred hhHhhhhhcccccccccchhhhhHhhHhhhhhhhhchHHHHHHHHHHHhccCCCcEEEecCCHHHHHHHHHHHHhcccCC
Q 002552 502 DHLTALFEDVDIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICRHEGDGAILVFLTGWNDISKLLDQIKVNKFLG 581 (908)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~~ 581 (908)
... .+..++.... ..++++||||+++++++.++..|.......
T Consensus 221 ----------------------------------~~~-~~~~~i~~~~--~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~ 263 (674)
T PRK01172 221 ----------------------------------SQV-DINSLIKETV--NDGGQVLVFVSSRKNAEDYAEMLIQHFPEF 263 (674)
T ss_pred ----------------------------------ccc-cHHHHHHHHH--hCCCcEEEEeccHHHHHHHHHHHHHhhhhc
Confidence 000 0112222222 346789999999999999999887531100
Q ss_pred ------------------CCCceEEEeccCCCChHhHHhhhCCCCCCCcEEEEeccccccccCCCCeEEEEeCCCcccee
Q 002552 582 ------------------DPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETS 643 (908)
Q Consensus 582 ------------------~~~~~~v~~lH~~l~~~er~~v~~~f~~g~~kIlvaT~iae~GidIp~v~~VId~g~~k~~~ 643 (908)
.....+|.+|||+|++++|+.+++.|++|.++|||||+++++|||+|+..+||+ +.++
T Consensus 264 ~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f~~g~i~VLvaT~~la~Gvnipa~~VII~-~~~~--- 339 (674)
T PRK01172 264 NDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMFRNRYIKVIVATPTLAAGVNLPARLVIVR-DITR--- 339 (674)
T ss_pred ccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHHHHHcCCCeEEEecchhhccCCCcceEEEEc-CceE---
Confidence 001246899999999999999999999999999999999999999999877775 3332
Q ss_pred eccccCccccccccccHhhHHHhccccCCCC---CcEEEEecCh-hhH---hh-cCCCCCC--------ccccCchHHHH
Q 002552 644 YDALNKLACLLPSWISKASAHQRRGRAGRVQ---PGVCYKLYPR-IIH---DA-MLPYQLP--------EILRTPLQELC 707 (908)
Q Consensus 644 yd~~~~~~~l~~~~iS~~~~~QR~GRaGR~~---~G~~~~l~~~-~~~---~~-l~~~~~p--------ei~r~~L~~~~ 707 (908)
|+. ....++|+++|.||+|||||.+ .|.++.+... +.+ .. +...+.| +..+.++...+
T Consensus 340 ~~~------~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~~~~~~~~~~l~~~~~pi~S~l~~~~~~~~~~l~~i 413 (674)
T PRK01172 340 YGN------GGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASPASYDAAKKYLSGEPEPVISYMGSQRKVRFNTLAAI 413 (674)
T ss_pred eCC------CCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCcccHHHHHHHHcCCCCceeecCCCcccHHHHHHHHH
Confidence 432 1235689999999999999984 6777776542 222 23 2222222 12222222222
Q ss_pred HHHhhcCCCchhhhhhccC---CCCC---HHHHHHHHHHHHHcCCCCCCC--CcCccccccccccCCchhhHHHHHhhhc
Q 002552 708 LHIKSLQLGTVGSFLSKAL---QPPD---PLAVQNAIELLKTIGALDDME--NLTPLGRHLCTLPVDPNIGKMLLMGAIF 779 (908)
Q Consensus 708 L~~~~l~~~~~~~fl~~~~---~~p~---~~~v~~al~~L~~~gal~~~~--~lT~lG~~~~~lpl~p~~~k~l~~~~~~ 779 (908)
......+..++.+|+..++ .+++ .+.++.+++.|.+.|+|+.++ .+|++|++++.+|++|..++.+..+..-
T Consensus 414 ~~g~~~~~~d~~~~l~~tf~~~~~~~~~l~~~v~~~l~~L~~~~~i~~~~~~~~t~lG~~~s~~~l~~~t~~~~~~~l~~ 493 (674)
T PRK01172 414 SMGLASSMEDLILFYNETLMAIQNGVDEIDYYIESSLKFLKENGFIKGDVTLRATRLGKLTSDLYIDPESALILKSAFDH 493 (674)
T ss_pred HhcccCCHHHHHHHHHhhhhHhcCchHHHHHHHHHHHHHHHHCCCcccCCcEeECHHHHHHHHhCCCHHHHHHHHHHhhc
Confidence 2222223345666653322 2222 467999999999999998654 5799999999999999999999877653
Q ss_pred c-ChHHHHHHHhhhccCCCCCCccccHHH--HHHHHHhhc-CCCCCcHHHHHHHHHHHHHHHcCCcHHHHHHHhcCCHHH
Q 002552 780 Q-CLNPALTIAAALAHRNPFVLPVNMQKE--VDEAKRSFA-GDSCSDHIALLKAFDGYKDAKRNRRERDFCWENFLSPIT 855 (908)
Q Consensus 780 ~-c~~~~l~i~a~l~~~~~f~~p~~~~~~--~~~~~~~~~-~~~~sD~l~~l~~f~~w~~~~~~~~~~~~c~~~~l~~~~ 855 (908)
. ....+|.++|... -| .|...+++ ....-.... .+....++...-+.++|.+ +......++.+.+..+.
T Consensus 494 ~~~~~~~l~~~~~~~---e~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~~~~---~~~~~~i~~~~~~~~g~ 566 (674)
T PRK01172 494 DYDEDLALYYISLCR---EI-IPANTRDDYYAMEFLEDIGVIDGDISAAKTAMVLRGWIS---EASMQKITDTYGIAPGD 566 (674)
T ss_pred cCCHHHHHHHhhcCc---cc-cccccchHHHHHHHHHHhccccchhHHHHHHHHHHHHHc---CCCHHHHHHHhCCChHH
Confidence 3 3344555554332 23 34332221 111111111 0122345666778889987 33455688889999998
Q ss_pred HHHHHHHHHHHHHHHHh
Q 002552 856 LQMMEDMRSQFLDLLSD 872 (908)
Q Consensus 856 l~~~~~~r~ql~~~l~~ 872 (908)
++.+..-..|+...+.+
T Consensus 567 l~~~~~~~~~~~~a~~~ 583 (674)
T PRK01172 567 VQARASSADWISYSLAR 583 (674)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88887777787655444
No 18
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=6.3e-44 Score=434.12 Aligned_cols=530 Identities=16% Similarity=0.133 Sum_probs=348.3
Q ss_pred hHHHHHHhhcCCCchHHHHHHHHH-HHhCCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHH
Q 002552 270 SGKAMLSFREKLPAFKMKAEFLKA-VAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAA 348 (908)
Q Consensus 270 ~~~~~~~~r~~lpi~~~Q~~~i~~-i~~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~ 348 (908)
.+.+.++.+..--++++|.++++. +.++++++++||||||||+++.++++..+.. +.++|+++|+|+||.|+++
T Consensus 11 ~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~-----~~kal~i~P~raLa~q~~~ 85 (737)
T PRK02362 11 GVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIAR-----GGKALYIVPLRALASEKFE 85 (737)
T ss_pred HHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhc-----CCcEEEEeChHHHHHHHHH
Confidence 333444444445678999999998 7899999999999999999999999987642 4579999999999999999
Q ss_pred HHHHHhCCCCCCEEeEEeeccc---cCCCCCcEEEEchHHHHHHHhcCC-CCCcceEEEEechhccchh---hHHHHHHH
Q 002552 349 RVSSERGENLGETVGYQIRLES---KRSAQTRLLFCTTGVLLRQLVEDP-DLSCVSHLLVDEIHERGMN---EDFLLIIL 421 (908)
Q Consensus 349 rv~~~~~~~~g~~vg~~~~~~~---~~~~~~~Iiv~T~g~Ll~~l~~~~-~l~~~~~iIiDEaHeR~~~---~d~ll~~l 421 (908)
++... . ..|..++....... ......+|+|+||+++..++.+.. ++.++++|||||+|.. .+ ...+..++
T Consensus 86 ~~~~~-~-~~g~~v~~~tGd~~~~~~~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~l-~d~~rg~~le~il 162 (737)
T PRK02362 86 EFERF-E-ELGVRVGISTGDYDSRDEWLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHLI-DSANRGPTLEVTL 162 (737)
T ss_pred HHHHh-h-cCCCEEEEEeCCcCccccccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECcccc-CCCcchHHHHHHH
Confidence 99753 2 22444443322111 112357999999999998887655 7899999999999942 22 12233344
Q ss_pred HHHCccCCCCcEEEecccC-ChHHHHhhhCCCCccccCCccccceeeeh-hhHHHhhhcccCcccccccccccccccccc
Q 002552 422 RDLLPRRPDLRLILMSATI-NADLFSKYFGNAPTVHIPGLTFPVTDLFL-EDVLEKTRYKMNSKLDSFQGNSRRSRRQDS 499 (908)
Q Consensus 422 k~~~~~~~~~qiIlmSAT~-~~~~~~~~f~~~~~i~v~~~~~~v~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (908)
.++....++.|+|+||||+ +.+.+++|++... +....++.++..... .+. .. +... .
T Consensus 163 ~rl~~~~~~~qii~lSATl~n~~~la~wl~~~~-~~~~~rpv~l~~~v~~~~~-----~~-------~~~~-~------- 221 (737)
T PRK02362 163 AKLRRLNPDLQVVALSATIGNADELADWLDAEL-VDSEWRPIDLREGVFYGGA-----IH-------FDDS-Q------- 221 (737)
T ss_pred HHHHhcCCCCcEEEEcccCCCHHHHHHHhCCCc-ccCCCCCCCCeeeEecCCe-----ec-------cccc-c-------
Confidence 4454556789999999999 6778999996432 322333333332110 000 00 0000 0
Q ss_pred hhhhHhhhhhcccccccccchhhhhHhhHhhhhhhhhchHHHHHHHHHHHhccCCCcEEEecCCHHHHHHHHHHHHhccc
Q 002552 500 KKDHLTALFEDVDIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICRHEGDGAILVFLTGWNDISKLLDQIKVNKF 579 (908)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~ 579 (908)
..+. ..........+...+ ..++++||||+++++++.++..|.....
T Consensus 222 ------~~~~-------------------------~~~~~~~~~~~~~~~--~~~~~~LVF~~sr~~~~~~a~~L~~~~~ 268 (737)
T PRK02362 222 ------REVE-------------------------VPSKDDTLNLVLDTL--EEGGQCLVFVSSRRNAEGFAKRAASALK 268 (737)
T ss_pred ------ccCC-------------------------CccchHHHHHHHHHH--HcCCCeEEEEeCHHHHHHHHHHHHHHhh
Confidence 0000 000000112222222 2467899999999999999888864210
Q ss_pred -----------------------------CCCCCceEEEeccCCCChHhHHhhhCCCCCCCcEEEEeccccccccCCCCe
Q 002552 580 -----------------------------LGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDV 630 (908)
Q Consensus 580 -----------------------------~~~~~~~~v~~lH~~l~~~er~~v~~~f~~g~~kIlvaT~iae~GidIp~v 630 (908)
+.......|.+|||+|++++|+.+++.|++|.++|||||+++++|||+|++
T Consensus 269 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~ 348 (737)
T PRK02362 269 KTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPAR 348 (737)
T ss_pred hcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEeecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCce
Confidence 000012579999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCccceeeccccCccccccccccHhhHHHhccccCCC---CCcEEEEecChh-----hHhhcC-CCCCCcc--c
Q 002552 631 VYVVDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRV---QPGVCYKLYPRI-----IHDAML-PYQLPEI--L 699 (908)
Q Consensus 631 ~~VId~g~~k~~~yd~~~~~~~l~~~~iS~~~~~QR~GRaGR~---~~G~~~~l~~~~-----~~~~l~-~~~~pei--~ 699 (908)
++||+. ...||+..+ ..++|..+|+||+|||||. ..|.|+.+.... .|+.+. ..+.|-. +
T Consensus 349 ~VVI~~----~~~yd~~~g-----~~~~s~~~y~Qm~GRAGR~g~d~~G~~ii~~~~~~~~~~~~~~~l~~~~~~i~S~l 419 (737)
T PRK02362 349 RVIIRD----YRRYDGGAG-----MQPIPVLEYHQMAGRAGRPGLDPYGEAVLLAKSYDELDELFERYIWADPEDVRSKL 419 (737)
T ss_pred EEEEec----ceeecCCCC-----ceeCCHHHHHHHhhcCCCCCCCCCceEEEEecCchhHHHHHHHHHhCCCCceeecC
Confidence 999973 445765433 2467999999999999998 349999998653 133322 2222211 1
Q ss_pred --cCchHHHHHHHhhcCC----CchhhhhhccC-CCC------CHHHHHHHHHHHHHcCCCCCCCC---cCccccccccc
Q 002552 700 --RTPLQELCLHIKSLQL----GTVGSFLSKAL-QPP------DPLAVQNAIELLKTIGALDDMEN---LTPLGRHLCTL 763 (908)
Q Consensus 700 --r~~L~~~~L~~~~l~~----~~~~~fl~~~~-~~p------~~~~v~~al~~L~~~gal~~~~~---lT~lG~~~~~l 763 (908)
...|...++...+.+. .++.+|+..++ ..+ -.+.++.+++.|.+.|+|+.++. +|++|++++.+
T Consensus 420 ~~~~~l~~~lla~I~~~~~~~~~d~~~~l~~Tf~~~~~~~~~~l~~~v~~~l~~L~~~~~i~~~~~~~~~t~lG~~~s~~ 499 (737)
T PRK02362 420 ATEPALRTHVLSTIASGFARTRDGLLEFLEATFYATQTDDTGRLERVVDDVLDFLERNGMIEEDGETLEATELGHLVSRL 499 (737)
T ss_pred CChhhHHHHHHHHHHhCccCCHHHHHHHHHhChHHhhccchHHHHHHHHHHHHHHHHCCCeeecCCeEeEChHHHHHHHh
Confidence 1235555665555542 34445544322 222 23458999999999999987653 89999999999
Q ss_pred cCCchhhHHHHHhhhcc---ChHHHHHHHhhhccCCCCCCccccHHHHHHHH-H---hh--------cCCCCC---cHHH
Q 002552 764 PVDPNIGKMLLMGAIFQ---CLNPALTIAAALAHRNPFVLPVNMQKEVDEAK-R---SF--------AGDSCS---DHIA 825 (908)
Q Consensus 764 pl~p~~~k~l~~~~~~~---c~~~~l~i~a~l~~~~~f~~p~~~~~~~~~~~-~---~~--------~~~~~s---D~l~ 825 (908)
+++|..++.+..+..-. ....+|.++|....-+.+....++.+...... . .+ ....+. -++.
T Consensus 500 ~l~~~t~~~~~~~l~~~~~~~~~~~l~~i~~~~e~~~~~~r~~e~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~k 579 (737)
T PRK02362 500 YIDPLSAAEIIDGLEAAKKPTDLGLLHLVCSTPDMYELYLRSGDYEWLNEYLYEHEDELLGDVPSEFEDDEFEDFLSAVK 579 (737)
T ss_pred cCCHHHHHHHHHHhhhcccCchHHHHHHhhcCccccccccChhHHHHHHHHHHhcccchhccCCchhhhhhHHHHHHHHH
Confidence 99999999998775532 23456666654333333322223322222110 0 01 100011 2334
Q ss_pred HHHHHHHHHHHHcCCcHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhC
Q 002552 826 LLKAFDGYKDAKRNRRERDFCWENFLSPITLQMMEDMRSQFLDLLSDI 873 (908)
Q Consensus 826 ~l~~f~~w~~~~~~~~~~~~c~~~~l~~~~l~~~~~~r~ql~~~l~~~ 873 (908)
..-+.++|.+ +......++++++....++.+.+...||+..+.++
T Consensus 580 ~~~ll~~~i~---~~~~~~i~~~~~~~~gdl~~~~~~~~~l~~a~~~i 624 (737)
T PRK02362 580 TALLLEDWID---EVDEERITERYGVGPGDIRGKVETAEWLLHAAERL 624 (737)
T ss_pred HHHHHHHHHh---CCCHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHH
Confidence 4567788886 34567889999999999999998888998877775
No 19
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=2.1e-45 Score=392.87 Aligned_cols=322 Identities=20% Similarity=0.202 Sum_probs=253.7
Q ss_pred HHHHhhcCCCchHHHHHHHHHHHhCCeEEEEecCCCCccchHHHHHHHHHHhcc-------CCCCcEEEEEcccHHHHHH
Q 002552 273 AMLSFREKLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSL-------RGADCNIICTQPRRISAIS 345 (908)
Q Consensus 273 ~~~~~r~~lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~~~~il~~~~~~~-------~~~~~~ilv~~P~r~la~q 345 (908)
++++.-...-++|+|.++|+..++++|+|.+|+||||||++|+++|+..+.... .-.++..++++|||+||.|
T Consensus 258 ~~I~~~~y~eptpIqR~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqq 337 (673)
T KOG0333|consen 258 SVIKKPGYKEPTPIQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQ 337 (673)
T ss_pred HHHHhcCCCCCchHHHhhccchhccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHH
Confidence 344444455678999999999999999999999999999999999987654322 1246789999999999999
Q ss_pred HHHHHHHHhCCCCCC----EEeEEeeccc--cCCCCCcEEEEchHHHHHHHhcCC-CCCcceEEEEechhccchhhHHHH
Q 002552 346 VAARVSSERGENLGE----TVGYQIRLES--KRSAQTRLLFCTTGVLLRQLVEDP-DLSCVSHLLVDEIHERGMNEDFLL 418 (908)
Q Consensus 346 i~~rv~~~~~~~~g~----~vg~~~~~~~--~~~~~~~Iiv~T~g~Ll~~l~~~~-~l~~~~~iIiDEaHeR~~~~d~ll 418 (908)
|..+-.++ +..+|. .||-.-..+. +.+.+|+|+++|||+|++.|.+.. .|+++.+||+|||+ |++|++|..
T Consensus 338 IeeEt~kf-~~~lg~r~vsvigg~s~EEq~fqls~gceiviatPgrLid~Lenr~lvl~qctyvvldead-rmiDmgfE~ 415 (673)
T KOG0333|consen 338 IEEETNKF-GKPLGIRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRLIDSLENRYLVLNQCTYVVLDEAD-RMIDMGFEP 415 (673)
T ss_pred HHHHHHHh-cccccceEEEEecccchhhhhhhhhccceeeecCchHHHHHHHHHHHHhccCceEeccchh-hhhcccccH
Confidence 98776443 334443 3333333333 457799999999999999998766 78999999999999 899999999
Q ss_pred HHHHHHCccC-----C--------------------CCcEEEecccCChH---HHHhhhCCCCccccC--Cccccc-eee
Q 002552 419 IILRDLLPRR-----P--------------------DLRLILMSATINAD---LFSKYFGNAPTVHIP--GLTFPV-TDL 467 (908)
Q Consensus 419 ~~lk~~~~~~-----~--------------------~~qiIlmSAT~~~~---~~~~~f~~~~~i~v~--~~~~~v-~~~ 467 (908)
.+.+.+..+. | -.|+++||||+++. ++..||..+.++.+. |+..|. +..
T Consensus 416 dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar~ylr~pv~vtig~~gk~~~rveQ~ 495 (673)
T KOG0333|consen 416 DVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLARSYLRRPVVVTIGSAGKPTPRVEQK 495 (673)
T ss_pred HHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHHHHHHHhhCCeEEEeccCCCCccchheE
Confidence 9988875432 1 16899999999765 467888887766664 232221 111
Q ss_pred ehhhHHHhhhcccCcccccccccccccccccchhhhHhhhhhcccccccccchhhhhHhhHhhhhhhhhchHHHHHHHHH
Q 002552 468 FLEDVLEKTRYKMNSKLDSFQGNSRRSRRQDSKKDHLTALFEDVDIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEY 547 (908)
Q Consensus 468 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~ 547 (908)
.. .+. .+-....+..
T Consensus 496 v~---------m~~--------------------------------------------------------ed~k~kkL~e 510 (673)
T KOG0333|consen 496 VE---------MVS--------------------------------------------------------EDEKRKKLIE 510 (673)
T ss_pred EE---------Eec--------------------------------------------------------chHHHHHHHH
Confidence 00 000 0001122333
Q ss_pred HHhccCCCcEEEecCCHHHHHHHHHHHHhcccCCCCCceEEEeccCCCChHhHHhhhCCCCCCCcEEEEeccccccccCC
Q 002552 548 ICRHEGDGAILVFLTGWNDISKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITI 627 (908)
Q Consensus 548 i~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lH~~l~~~er~~v~~~f~~g~~kIlvaT~iae~GidI 627 (908)
|+......+||||+++++.|+.|++.|.. .++.+..|||+-++++|+.++..|++|...|+||||+|++||||
T Consensus 511 il~~~~~ppiIIFvN~kk~~d~lAk~LeK-------~g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDI 583 (673)
T KOG0333|consen 511 ILESNFDPPIIIFVNTKKGADALAKILEK-------AGYKVTTLHGGKSQEQRENALADFREGTGDILVATDVAGRGIDI 583 (673)
T ss_pred HHHhCCCCCEEEEEechhhHHHHHHHHhh-------ccceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccCCCC
Confidence 44444567899999999999999999988 67999999999999999999999999999999999999999999
Q ss_pred CCeEEEEeCCCccceeeccccCccccccccccHhhHHHhccccCCC-CCcEEEEecChhh
Q 002552 628 DDVVYVVDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRV-QPGVCYKLYPRII 686 (908)
Q Consensus 628 p~v~~VId~g~~k~~~yd~~~~~~~l~~~~iS~~~~~QR~GRaGR~-~~G~~~~l~~~~~ 686 (908)
|||.+||||+++| |..+|.||+|||||+ +.|.++.|+++++
T Consensus 584 pnVSlVinydmak------------------sieDYtHRIGRTgRAGk~GtaiSflt~~d 625 (673)
T KOG0333|consen 584 PNVSLVINYDMAK------------------SIEDYTHRIGRTGRAGKSGTAISFLTPAD 625 (673)
T ss_pred Cccceeeecchhh------------------hHHHHHHHhccccccccCceeEEEeccch
Confidence 9999999999999 777999999999999 7799999999876
No 20
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.4e-46 Score=405.39 Aligned_cols=364 Identities=17% Similarity=0.173 Sum_probs=272.8
Q ss_pred hcCCCCCCCCCCccccccccCCccccccccCCCCCCCchHHHhHHHHHHHHHHHhccChhHHHHHHhhcCCCchHHHHHH
Q 002552 211 SSQGNVPVNDSGIESSEVARRPKLSVKVANTISPPQSDSAKERLNVILKERQEKLKSSDSGKAMLSFREKLPAFKMKAEF 290 (908)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~r~~lpi~~~Q~~~ 290 (908)
...+.||++|+.+++ +.+|.++|. ++++++...+.+.|..+... ....-++++|+..
T Consensus 48 ~~~~~nfd~~~~i~v------~~~G~~~p~----~i~~f~~~~l~~~l~~ni~~-------------~~~~~ptpvQk~s 104 (482)
T KOG0335|consen 48 ISTGINFDKYNDIPV------KVSGRDVPP----HIPTFDEAILGEALAGNIKR-------------SGYTKPTPVQKYS 104 (482)
T ss_pred cchhhccCCccceee------eccCCccCC----CcccccccchhHHHhhcccc-------------ccccCCCcceeec
Confidence 345789999999888 777788776 56666655555555544332 3334567899999
Q ss_pred HHHHHhCCeEEEEecCCCCccchHHHHHHHHHHhccC--------CCCcEEEEEcccHHHHHHHHHHHHHHhCCCC-CCE
Q 002552 291 LKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLR--------GADCNIICTQPRRISAISVAARVSSERGENL-GET 361 (908)
Q Consensus 291 i~~i~~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~--------~~~~~ilv~~P~r~la~qi~~rv~~~~~~~~-g~~ 361 (908)
|+.+..|+++++||+||||||.+|++|+++.++.... +..+.+++++|||+||.|++.+..+..+... -..
T Consensus 105 ip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~ 184 (482)
T KOG0335|consen 105 IPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIYNEARKFSYLSGMKSV 184 (482)
T ss_pred cceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHHHHHHhhcccccceee
Confidence 9999999999999999999999999999999876532 1357899999999999999999988765432 222
Q ss_pred EeEEe----eccccCCCCCcEEEEchHHHHHHHhcCC-CCCcceEEEEechhccchh-hHHHHHHHHHHCccC----CCC
Q 002552 362 VGYQI----RLESKRSAQTRLLFCTTGVLLRQLVEDP-DLSCVSHLLVDEIHERGMN-EDFLLIILRDLLPRR----PDL 431 (908)
Q Consensus 362 vg~~~----~~~~~~~~~~~Iiv~T~g~Ll~~l~~~~-~l~~~~~iIiDEaHeR~~~-~d~ll~~lk~~~~~~----~~~ 431 (908)
+.|.- ........+|+|+|||||+|.+++..+. .|+++.++|||||| |+++ ++|...+-+++.... ...
T Consensus 185 ~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g~i~l~~~k~~vLDEAD-rMlD~mgF~p~Ir~iv~~~~~~~~~~~ 263 (482)
T KOG0335|consen 185 VVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERGKISLDNCKFLVLDEAD-RMLDEMGFEPQIRKIVEQLGMPPKNNR 263 (482)
T ss_pred eeeCCcchhhhhhhhccCccEEEecCchhhhhhhcceeehhhCcEEEecchH-HhhhhccccccHHHHhcccCCCCccce
Confidence 33432 1122334589999999999999998887 89999999999999 9999 999999988876642 378
Q ss_pred cEEEecccCChHH--HHhhhCCC-Cc-cccCCccccceeeehhhHHHhhhcccCcccccccccccccccccchhhhHhhh
Q 002552 432 RLILMSATINADL--FSKYFGNA-PT-VHIPGLTFPVTDLFLEDVLEKTRYKMNSKLDSFQGNSRRSRRQDSKKDHLTAL 507 (908)
Q Consensus 432 qiIlmSAT~~~~~--~~~~f~~~-~~-i~v~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (908)
|.++||||++.+. +..+|-.. .+ +.|. ......++..+...|..
T Consensus 264 qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~--------------------rvg~~~~ni~q~i~~V~------------ 311 (482)
T KOG0335|consen 264 QTLLFSATFPKEIQRLAADFLKDNYIFLAVG--------------------RVGSTSENITQKILFVN------------ 311 (482)
T ss_pred eEEEEeccCChhhhhhHHHHhhccceEEEEe--------------------eeccccccceeEeeeec------------
Confidence 9999999998764 34444211 11 1100 00011111111111100
Q ss_pred hhcccccccccchhhhhHhhHhhhhhhhhchHHHHHHHHHHHhcc---CCC-----cEEEecCCHHHHHHHHHHHHhccc
Q 002552 508 FEDVDIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICRHE---GDG-----AILVFLTGWNDISKLLDQIKVNKF 579 (908)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~~---~~g-----~iLVF~~~~~~i~~l~~~L~~~~~ 579 (908)
+.+.+..++..+.... ..+ .+||||.+++.+..++..|..
T Consensus 312 -----------------------------~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~--- 359 (482)
T KOG0335|consen 312 -----------------------------EMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSS--- 359 (482)
T ss_pred -----------------------------chhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhc---
Confidence 0111223333332221 233 899999999999999999998
Q ss_pred CCCCCceEEEeccCCCChHhHHhhhCCCCCCCcEEEEeccccccccCCCCeEEEEeCCCccceeeccccCcccccccccc
Q 002552 580 LGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETSYDALNKLACLLPSWIS 659 (908)
Q Consensus 580 ~~~~~~~~v~~lH~~l~~~er~~v~~~f~~g~~kIlvaT~iae~GidIp~v~~VId~g~~k~~~yd~~~~~~~l~~~~iS 659 (908)
..+....+||+.++.+|.++++.|+.|+..|+|||||++||||||+|++||+|++|....
T Consensus 360 ----~~~~~~sIhg~~tq~er~~al~~Fr~g~~pvlVaT~VaaRGlDi~~V~hVInyDmP~d~d---------------- 419 (482)
T KOG0335|consen 360 ----NGYPAKSIHGDRTQIEREQALNDFRNGKAPVLVATNVAARGLDIPNVKHVINYDMPADID---------------- 419 (482)
T ss_pred ----CCCCceeecchhhhhHHHHHHHHhhcCCcceEEEehhhhcCCCCCCCceeEEeecCcchh----------------
Confidence 566778899999999999999999999999999999999999999999999999999644
Q ss_pred HhhHHHhccccCCC-CCcEEEEecCh
Q 002552 660 KASAHQRRGRAGRV-QPGVCYKLYPR 684 (908)
Q Consensus 660 ~~~~~QR~GRaGR~-~~G~~~~l~~~ 684 (908)
+|+||+|||||. ..|.++.||..
T Consensus 420 --~YvHRIGRTGR~Gn~G~atsf~n~ 443 (482)
T KOG0335|consen 420 --DYVHRIGRTGRVGNGGRATSFFNE 443 (482)
T ss_pred --hHHHhccccccCCCCceeEEEecc
Confidence 999999999999 67999999983
No 21
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.1e-44 Score=420.11 Aligned_cols=329 Identities=20% Similarity=0.259 Sum_probs=255.7
Q ss_pred cChhHHHHHHhhcCCCchHHHHHHHHHHHhCCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHH
Q 002552 267 SSDSGKAMLSFREKLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISV 346 (908)
Q Consensus 267 ~~~~~~~~~~~r~~lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi 346 (908)
.++.+.+.+......-++++|.++||.++.++|+++.|+||||||.+|.+|+++.+..........+||++||||||.|+
T Consensus 36 l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~PTRELA~Qi 115 (513)
T COG0513 36 LSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAPTRELAVQI 115 (513)
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEECCCHHHHHHH
Confidence 44444445555566778899999999999999999999999999999999999996531111111189999999999999
Q ss_pred HHHHHHHhCCCCCCEEeEEeecc------ccCCCCCcEEEEchHHHHHHHhcCC-CCCcceEEEEechhccchhhHHHHH
Q 002552 347 AARVSSERGENLGETVGYQIRLE------SKRSAQTRLLFCTTGVLLRQLVEDP-DLSCVSHLLVDEIHERGMNEDFLLI 419 (908)
Q Consensus 347 ~~rv~~~~~~~~g~~vg~~~~~~------~~~~~~~~Iiv~T~g~Ll~~l~~~~-~l~~~~~iIiDEaHeR~~~~d~ll~ 419 (908)
++.+........+..+...+... .....+++|+|+|||+|++++.... .++++.++|+|||| |+++++|...
T Consensus 116 ~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEAD-rmLd~Gf~~~ 194 (513)
T COG0513 116 AEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEAD-RMLDMGFIDD 194 (513)
T ss_pred HHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEeccHh-hhhcCCCHHH
Confidence 98886654432122222222111 1223369999999999999999886 89999999999999 8899999999
Q ss_pred HHHHHCccCCCCcEEEecccCChHH---HHhhhCCCCccccCCcc-----ccceeeehhhHHHhhhcccCcccccccccc
Q 002552 420 ILRDLLPRRPDLRLILMSATINADL---FSKYFGNAPTVHIPGLT-----FPVTDLFLEDVLEKTRYKMNSKLDSFQGNS 491 (908)
Q Consensus 420 ~lk~~~~~~~~~qiIlmSAT~~~~~---~~~~f~~~~~i~v~~~~-----~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~ 491 (908)
+.+.+....++.|++++|||++.+. ...|+.++..+.+.... ..+..+|+.-
T Consensus 195 i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v-------------------- 254 (513)
T COG0513 195 IEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEV-------------------- 254 (513)
T ss_pred HHHHHHhCCcccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEe--------------------
Confidence 9888888888999999999998753 33555544444443111 1122222100
Q ss_pred cccccccchhhhHhhhhhcccccccccchhhhhHhhHhhhhhhhhchHHHHHHHHHHHhccCCCcEEEecCCHHHHHHHH
Q 002552 492 RRSRRQDSKKDHLTALFEDVDIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICRHEGDGAILVFLTGWNDISKLL 571 (908)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~~~~g~iLVF~~~~~~i~~l~ 571 (908)
...+....++..++.....+++||||+|+..++.++
T Consensus 255 --------------------------------------------~~~~~k~~~L~~ll~~~~~~~~IVF~~tk~~~~~l~ 290 (513)
T COG0513 255 --------------------------------------------ESEEEKLELLLKLLKDEDEGRVIVFVRTKRLVEELA 290 (513)
T ss_pred --------------------------------------------CCHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHH
Confidence 000013456666776666778999999999999999
Q ss_pred HHHHhcccCCCCCceEEEeccCCCChHhHHhhhCCCCCCCcEEEEeccccccccCCCCeEEEEeCCCccceeeccccCcc
Q 002552 572 DQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETSYDALNKLA 651 (908)
Q Consensus 572 ~~L~~~~~~~~~~~~~v~~lH~~l~~~er~~v~~~f~~g~~kIlvaT~iae~GidIp~v~~VId~g~~k~~~yd~~~~~~ 651 (908)
..|.. .++.+..+||+|+|++|.++++.|++|..+||||||||+||||||+|.+|||||+|.
T Consensus 291 ~~l~~-------~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~~VinyD~p~----------- 352 (513)
T COG0513 291 ESLRK-------RGFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSHVINYDLPL----------- 352 (513)
T ss_pred HHHHH-------CCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCccccceeEEccCCC-----------
Confidence 99998 568899999999999999999999999999999999999999999999999999998
Q ss_pred ccccccccHhhHHHhccccCCC-CCcEEEEecChh
Q 002552 652 CLLPSWISKASAHQRRGRAGRV-QPGVCYKLYPRI 685 (908)
Q Consensus 652 ~l~~~~iS~~~~~QR~GRaGR~-~~G~~~~l~~~~ 685 (908)
+.++|+||+|||||. ..|.++.|+++.
T Consensus 353 -------~~e~yvHRiGRTgRaG~~G~ai~fv~~~ 380 (513)
T COG0513 353 -------DPEDYVHRIGRTGRAGRKGVAISFVTEE 380 (513)
T ss_pred -------CHHHheeccCccccCCCCCeEEEEeCcH
Confidence 555999999999999 789999999864
No 22
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2e-44 Score=383.74 Aligned_cols=348 Identities=19% Similarity=0.222 Sum_probs=258.6
Q ss_pred HHHHHHHHHHhccChhHHHHHHhhcCCCchHHHHHHHHHHHhCCeEEEEecCCCCccchHHHHHHHHHHhccCC-CCcEE
Q 002552 255 NVILKERQEKLKSSDSGKAMLSFREKLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRG-ADCNI 333 (908)
Q Consensus 255 ~~~l~~~~~~~~~~~~~~~~~~~r~~lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~-~~~~i 333 (908)
...+...++.+..|..+-+.+..-..--++|+|...||..+-|++++.||-||||||.+|.+|+|+.++-...+ +..+|
T Consensus 176 ~~~~~~sF~~mNLSRPlLka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRV 255 (691)
T KOG0338|consen 176 DTQMNESFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKKVAATRV 255 (691)
T ss_pred hhHHhhhHHhcccchHHHHHHHhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCcccCcceeE
Confidence 34445567777777777777777777788899999999999999999999999999999999999998765444 44689
Q ss_pred EEEcccHHHHHHHHHH---HHHHhCCCCCCEEeE-Eeec-cccCCCCCcEEEEchHHHHHHHhcCC--CCCcceEEEEec
Q 002552 334 ICTQPRRISAISVAAR---VSSERGENLGETVGY-QIRL-ESKRSAQTRLLFCTTGVLLRQLVEDP--DLSCVSHLLVDE 406 (908)
Q Consensus 334 lv~~P~r~la~qi~~r---v~~~~~~~~g~~vg~-~~~~-~~~~~~~~~Iiv~T~g~Ll~~l~~~~--~l~~~~~iIiDE 406 (908)
||++|||+||+|+++. ++++....+|..||- .++. +......++|+|+|||+|.++|.+.+ .|+++.++|+||
T Consensus 256 LVL~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDE 335 (691)
T KOG0338|consen 256 LVLVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDE 335 (691)
T ss_pred EEEeccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEech
Confidence 9999999999999854 444444444444432 2222 22334589999999999999999988 799999999999
Q ss_pred hhccchhhHHHHHHHHHHCccCCCCcEEEecccCChHH--HHhhhCCCCccccCCccccceeeehhhHHHhhhcccCccc
Q 002552 407 IHERGMNEDFLLIILRDLLPRRPDLRLILMSATINADL--FSKYFGNAPTVHIPGLTFPVTDLFLEDVLEKTRYKMNSKL 484 (908)
Q Consensus 407 aHeR~~~~d~ll~~lk~~~~~~~~~qiIlmSAT~~~~~--~~~~f~~~~~i~v~~~~~~v~~~~l~~~~~~~~~~~~~~~ 484 (908)
|| |+++..|-..+-..+.....++|+++||||+..+. +...=-+. ||.++.-+..
T Consensus 336 AD-RMLeegFademnEii~lcpk~RQTmLFSATMteeVkdL~slSL~k----------Pvrifvd~~~------------ 392 (691)
T KOG0338|consen 336 AD-RMLEEGFADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNK----------PVRIFVDPNK------------ 392 (691)
T ss_pred HH-HHHHHHHHHHHHHHHHhccccccceeehhhhHHHHHHHHHhhcCC----------CeEEEeCCcc------------
Confidence 99 99999998887666655666899999999997553 44322222 2222110000
Q ss_pred ccccccccccccccchhhhHhhhhhcccccccccchhhhhHhhHhhhhhhhhchHHHHHHHHHHHhccCCCcEEEecCCH
Q 002552 485 DSFQGNSRRSRRQDSKKDHLTALFEDVDIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICRHEGDGAILVFLTGW 564 (908)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~~~~g~iLVF~~~~ 564 (908)
...-.+.+-|-.+...- .. +-..++..++...-...++||+.|+
T Consensus 393 --------------~~a~~LtQEFiRIR~~r-------------------e~---dRea~l~~l~~rtf~~~~ivFv~tK 436 (691)
T KOG0338|consen 393 --------------DTAPKLTQEFIRIRPKR-------------------EG---DREAMLASLITRTFQDRTIVFVRTK 436 (691)
T ss_pred --------------ccchhhhHHHheecccc-------------------cc---ccHHHHHHHHHHhcccceEEEEehH
Confidence 00000111111000000 00 0112233333323356799999999
Q ss_pred HHHHHHHHHHHhcccCCCCCceEEEeccCCCChHhHHhhhCCCCCCCcEEEEeccccccccCCCCeEEEEeCCCccceee
Q 002552 565 NDISKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETSY 644 (908)
Q Consensus 565 ~~i~~l~~~L~~~~~~~~~~~~~v~~lH~~l~~~er~~v~~~f~~g~~kIlvaT~iae~GidIp~v~~VId~g~~k~~~y 644 (908)
+.++.+.-.|-- .++.+.-+||+|+|++|-++++.|+.+.+.||||||+|+|||||++|..||||.+|+
T Consensus 437 k~AHRl~IllGL-------lgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV~tVINy~mP~---- 505 (691)
T KOG0338|consen 437 KQAHRLRILLGL-------LGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGVQTVINYAMPK---- 505 (691)
T ss_pred HHHHHHHHHHHH-------hhchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCccceeEEEeccCch----
Confidence 999998766654 567788899999999999999999999999999999999999999999999999999
Q ss_pred ccccCccccccccccHhhHHHhccccCCC-CCcEEEEecChhh
Q 002552 645 DALNKLACLLPSWISKASAHQRRGRAGRV-QPGVCYKLYPRII 686 (908)
Q Consensus 645 d~~~~~~~l~~~~iS~~~~~QR~GRaGR~-~~G~~~~l~~~~~ 686 (908)
|...|+||+||+.|+ +.|..+.|..+.+
T Consensus 506 --------------t~e~Y~HRVGRTARAGRaGrsVtlvgE~d 534 (691)
T KOG0338|consen 506 --------------TIEHYLHRVGRTARAGRAGRSVTLVGESD 534 (691)
T ss_pred --------------hHHHHHHHhhhhhhcccCcceEEEecccc
Confidence 556999999999999 7899999998764
No 23
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=1.6e-43 Score=410.38 Aligned_cols=326 Identities=18% Similarity=0.193 Sum_probs=244.3
Q ss_pred hhHHHHHHhhcCCCchHHHHHHHHHHHhCCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHH
Q 002552 269 DSGKAMLSFREKLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAA 348 (908)
Q Consensus 269 ~~~~~~~~~r~~lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~ 348 (908)
+.+.+.+.....-.++++|.++|+.++++++++++||||||||+++.+++++.+... ...+++||++|||+||.|+++
T Consensus 13 ~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~--~~~~~~lil~PtreLa~Q~~~ 90 (460)
T PRK11776 13 PALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVK--RFRVQALVLCPTRELADQVAK 90 (460)
T ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhc--cCCceEEEEeCCHHHHHHHHH
Confidence 333333344444567889999999999999999999999999999999999886432 224578999999999999999
Q ss_pred HHHHHhCCCCCCEEeEEeec------cccCCCCCcEEEEchHHHHHHHhcCC-CCCcceEEEEechhccchhhHHHHHHH
Q 002552 349 RVSSERGENLGETVGYQIRL------ESKRSAQTRLLFCTTGVLLRQLVEDP-DLSCVSHLLVDEIHERGMNEDFLLIIL 421 (908)
Q Consensus 349 rv~~~~~~~~g~~vg~~~~~------~~~~~~~~~Iiv~T~g~Ll~~l~~~~-~l~~~~~iIiDEaHeR~~~~d~ll~~l 421 (908)
.+........+..+...... ......+++|+|+|||+|++++..+. .++++++||||||| ++++++|...+.
T Consensus 91 ~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad-~~l~~g~~~~l~ 169 (460)
T PRK11776 91 EIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEAD-RMLDMGFQDAID 169 (460)
T ss_pred HHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHH-HHhCcCcHHHHH
Confidence 88765432222333221111 11123578999999999999998766 78999999999999 667877777666
Q ss_pred HHHCccCCCCcEEEecccCChHH--HHhh-hCCCCccccCCcc--ccceeeehhhHHHhhhcccCccccccccccccccc
Q 002552 422 RDLLPRRPDLRLILMSATINADL--FSKY-FGNAPTVHIPGLT--FPVTDLFLEDVLEKTRYKMNSKLDSFQGNSRRSRR 496 (908)
Q Consensus 422 k~~~~~~~~~qiIlmSAT~~~~~--~~~~-f~~~~~i~v~~~~--~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (908)
..+....++.|+++||||++... +... +.++..+.+.... ..+..+|..
T Consensus 170 ~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~i~~~~~~-------------------------- 223 (460)
T PRK11776 170 AIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTHDLPAIEQRFYE-------------------------- 223 (460)
T ss_pred HHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCCCCCCeeEEEEE--------------------------
Confidence 66655667889999999997653 4443 3333333322111 011111110
Q ss_pred ccchhhhHhhhhhcccccccccchhhhhHhhHhhhhhhhhchHHHHHHHHHHHhccCCCcEEEecCCHHHHHHHHHHHHh
Q 002552 497 QDSKKDHLTALFEDVDIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICRHEGDGAILVFLTGWNDISKLLDQIKV 576 (908)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~~~~g~iLVF~~~~~~i~~l~~~L~~ 576 (908)
. +.......+..++....++++||||++++.++.+++.|..
T Consensus 224 -----------------------~----------------~~~~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~ 264 (460)
T PRK11776 224 -----------------------V----------------SPDERLPALQRLLLHHQPESCVVFCNTKKECQEVADALNA 264 (460)
T ss_pred -----------------------e----------------CcHHHHHHHHHHHHhcCCCceEEEECCHHHHHHHHHHHHh
Confidence 0 0000122334444445667899999999999999999987
Q ss_pred cccCCCCCceEEEeccCCCChHhHHhhhCCCCCCCcEEEEeccccccccCCCCeEEEEeCCCccceeeccccCccccccc
Q 002552 577 NKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETSYDALNKLACLLPS 656 (908)
Q Consensus 577 ~~~~~~~~~~~v~~lH~~l~~~er~~v~~~f~~g~~kIlvaT~iae~GidIp~v~~VId~g~~k~~~yd~~~~~~~l~~~ 656 (908)
.++.+.++||+|++.+|+.+++.|++|..+|||||+++++|||||+|++||++|+|.
T Consensus 265 -------~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~VI~~d~p~---------------- 321 (460)
T PRK11776 265 -------QGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAVINYELAR---------------- 321 (460)
T ss_pred -------CCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCeEEEecCCC----------------
Confidence 567899999999999999999999999999999999999999999999999999998
Q ss_pred cccHhhHHHhccccCCC-CCcEEEEecChhhH
Q 002552 657 WISKASAHQRRGRAGRV-QPGVCYKLYPRIIH 687 (908)
Q Consensus 657 ~iS~~~~~QR~GRaGR~-~~G~~~~l~~~~~~ 687 (908)
+..+|+||+|||||. +.|.||.|++..+.
T Consensus 322 --~~~~yiqR~GRtGR~g~~G~ai~l~~~~e~ 351 (460)
T PRK11776 322 --DPEVHVHRIGRTGRAGSKGLALSLVAPEEM 351 (460)
T ss_pred --CHhHhhhhcccccCCCCcceEEEEEchhHH
Confidence 566999999999999 67999999998644
No 24
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=3.3e-43 Score=403.31 Aligned_cols=329 Identities=16% Similarity=0.154 Sum_probs=241.3
Q ss_pred cChhHHHHHHhhcCCCchHHHHHHHHHHHhCCeEEEEecCCCCccchHHHHHHHHHHhccC-----CCCcEEEEEcccHH
Q 002552 267 SSDSGKAMLSFREKLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLR-----GADCNIICTQPRRI 341 (908)
Q Consensus 267 ~~~~~~~~~~~r~~lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~-----~~~~~ilv~~P~r~ 341 (908)
..+.+.+.+.....-.++++|.++|+.+++++|++++||||||||+++.+++++.+..... ...+++||++|||+
T Consensus 15 l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~lil~Ptre 94 (423)
T PRK04837 15 LHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRALIMAPTRE 94 (423)
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceEEEECCcHH
Confidence 3333434444444556788999999999999999999999999999999999988764321 23578999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCEEeEEeeccc------cCCCCCcEEEEchHHHHHHHhcCC-CCCcceEEEEechhccchhh
Q 002552 342 SAISVAARVSSERGENLGETVGYQIRLES------KRSAQTRLLFCTTGVLLRQLVEDP-DLSCVSHLLVDEIHERGMNE 414 (908)
Q Consensus 342 la~qi~~rv~~~~~~~~g~~vg~~~~~~~------~~~~~~~Iiv~T~g~Ll~~l~~~~-~l~~~~~iIiDEaHeR~~~~ 414 (908)
||.|+++.+... ....+..++....... ....+++|+|+|||+|++++.... .++++++||||||| +.++.
T Consensus 95 La~Qi~~~~~~l-~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDEad-~l~~~ 172 (423)
T PRK04837 95 LAVQIHADAEPL-AQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEAD-RMFDL 172 (423)
T ss_pred HHHHHHHHHHHH-hccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEEecHH-HHhhc
Confidence 999998876554 3334555544332221 123468999999999999997765 78999999999999 55776
Q ss_pred HHHHHHHHHHCccC--CCCcEEEecccCChHH---HHhhhCCCCccccCCcccc---ceeeehhhHHHhhhcccCccccc
Q 002552 415 DFLLIILRDLLPRR--PDLRLILMSATINADL---FSKYFGNAPTVHIPGLTFP---VTDLFLEDVLEKTRYKMNSKLDS 486 (908)
Q Consensus 415 d~ll~~lk~~~~~~--~~~qiIlmSAT~~~~~---~~~~f~~~~~i~v~~~~~~---v~~~~l~~~~~~~~~~~~~~~~~ 486 (908)
+|...+...+.... ...+.+++|||++... ...++.++..+.+...... +...+.
T Consensus 173 ~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~~~~~~i~~~~~----------------- 235 (423)
T PRK04837 173 GFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQKTGHRIKEELF----------------- 235 (423)
T ss_pred ccHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCCcCCCceeEEEE-----------------
Confidence 66655533332222 3456899999997653 2344443333222111000 000000
Q ss_pred ccccccccccccchhhhHhhhhhcccccccccchhhhhHhhHhhhhhhhhchHHHHHHHHHHHhccCCCcEEEecCCHHH
Q 002552 487 FQGNSRRSRRQDSKKDHLTALFEDVDIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICRHEGDGAILVFLTGWND 566 (908)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~~~~g~iLVF~~~~~~ 566 (908)
+. +.......+..++......++||||+++..
T Consensus 236 ---------------------------------~~---------------~~~~k~~~l~~ll~~~~~~~~lVF~~t~~~ 267 (423)
T PRK04837 236 ---------------------------------YP---------------SNEEKMRLLQTLIEEEWPDRAIIFANTKHR 267 (423)
T ss_pred ---------------------------------eC---------------CHHHHHHHHHHHHHhcCCCeEEEEECCHHH
Confidence 00 000011233344444456789999999999
Q ss_pred HHHHHHHHHhcccCCCCCceEEEeccCCCChHhHHhhhCCCCCCCcEEEEeccccccccCCCCeEEEEeCCCccceeecc
Q 002552 567 ISKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETSYDA 646 (908)
Q Consensus 567 i~~l~~~L~~~~~~~~~~~~~v~~lH~~l~~~er~~v~~~f~~g~~kIlvaT~iae~GidIp~v~~VId~g~~k~~~yd~ 646 (908)
++.+++.|.. .++.+..+||+|++++|..+++.|++|+++||||||++++|||||+|++||++++|.
T Consensus 268 ~~~l~~~L~~-------~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip~v~~VI~~d~P~------ 334 (423)
T PRK04837 268 CEEIWGHLAA-------DGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPD------ 334 (423)
T ss_pred HHHHHHHHHh-------CCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCccccCEEEEeCCCC------
Confidence 9999999987 567899999999999999999999999999999999999999999999999999998
Q ss_pred ccCccccccccccHhhHHHhccccCCC-CCcEEEEecChhhH
Q 002552 647 LNKLACLLPSWISKASAHQRRGRAGRV-QPGVCYKLYPRIIH 687 (908)
Q Consensus 647 ~~~~~~l~~~~iS~~~~~QR~GRaGR~-~~G~~~~l~~~~~~ 687 (908)
|.++|+||+|||||. +.|.|+.|+++++.
T Consensus 335 ------------s~~~yiqR~GR~gR~G~~G~ai~~~~~~~~ 364 (423)
T PRK04837 335 ------------DCEDYVHRIGRTGRAGASGHSISLACEEYA 364 (423)
T ss_pred ------------chhheEeccccccCCCCCeeEEEEeCHHHH
Confidence 566999999999999 78999999998643
No 25
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=5.3e-42 Score=416.29 Aligned_cols=531 Identities=16% Similarity=0.112 Sum_probs=339.2
Q ss_pred ccChhHHHHHHhhcCCCchHHHHHHHHH-HHhCCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHH
Q 002552 266 KSSDSGKAMLSFREKLPAFKMKAEFLKA-VAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAI 344 (908)
Q Consensus 266 ~~~~~~~~~~~~r~~lpi~~~Q~~~i~~-i~~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~ 344 (908)
...+.+.+.++.+..-.++++|.++++. +++++++++++|||||||+++.+++++.+... +.++|+++|+|+||.
T Consensus 7 ~l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~----~~~~l~l~P~~aLa~ 82 (720)
T PRK00254 7 RVDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLRE----GGKAVYLVPLKALAE 82 (720)
T ss_pred CCCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhc----CCeEEEEeChHHHHH
Confidence 3445555666666666788999999986 88999999999999999999999999887542 458999999999999
Q ss_pred HHHHHHHHHhCCCCCCEEeEEeeccc---cCCCCCcEEEEchHHHHHHHhcCC-CCCcceEEEEechhccchhhHHHHHH
Q 002552 345 SVAARVSSERGENLGETVGYQIRLES---KRSAQTRLLFCTTGVLLRQLVEDP-DLSCVSHLLVDEIHERGMNEDFLLII 420 (908)
Q Consensus 345 qi~~rv~~~~~~~~g~~vg~~~~~~~---~~~~~~~Iiv~T~g~Ll~~l~~~~-~l~~~~~iIiDEaHeR~~~~d~ll~~ 420 (908)
|+++++... . ..|..|+....... .....++|+|+||+++..++.+.. +++++++|||||+|.. .+.+....+
T Consensus 83 q~~~~~~~~-~-~~g~~v~~~~Gd~~~~~~~~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~l-~~~~rg~~l 159 (720)
T PRK00254 83 EKYREFKDW-E-KLGLRVAMTTGDYDSTDEWLGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHLI-GSYDRGATL 159 (720)
T ss_pred HHHHHHHHH-h-hcCCEEEEEeCCCCCchhhhccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCcc-CCccchHHH
Confidence 999988753 2 34555544332211 112467999999999998887655 8899999999999942 222211111
Q ss_pred HHHHCccCCCCcEEEecccC-ChHHHHhhhCCCCccccCCccccceeeehhhHHHhhhcccCcccccccccccccccccc
Q 002552 421 LRDLLPRRPDLRLILMSATI-NADLFSKYFGNAPTVHIPGLTFPVTDLFLEDVLEKTRYKMNSKLDSFQGNSRRSRRQDS 499 (908)
Q Consensus 421 lk~~~~~~~~~qiIlmSAT~-~~~~~~~~f~~~~~i~v~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (908)
-..+.....+.|+|+||||+ |++.+.+|++... +....+..|+........ +.. +.. .
T Consensus 160 e~il~~l~~~~qiI~lSATl~n~~~la~wl~~~~-~~~~~rpv~l~~~~~~~~-----~~~------~~~---------~ 218 (720)
T PRK00254 160 EMILTHMLGRAQILGLSATVGNAEELAEWLNAEL-VVSDWRPVKLRKGVFYQG-----FLF------WED---------G 218 (720)
T ss_pred HHHHHhcCcCCcEEEEEccCCCHHHHHHHhCCcc-ccCCCCCCcceeeEecCC-----eee------ccC---------c
Confidence 11122234568999999999 6788999997533 322333333321110000 000 000 0
Q ss_pred hhhhHhhhhhcccccccccchhhhhHhhHhhhhhhhhchHHHHHHHHHHHhccCCCcEEEecCCHHHHHHHHHHHHhcc-
Q 002552 500 KKDHLTALFEDVDIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICRHEGDGAILVFLTGWNDISKLLDQIKVNK- 578 (908)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~- 578 (908)
..+. + . ......+..... .++++||||++++.++.++..|....
T Consensus 219 ~~~~----------------~----------------~-~~~~~~~~~~i~--~~~~vLVF~~sr~~~~~~a~~l~~~~~ 263 (720)
T PRK00254 219 KIER----------------F----------------P-NSWESLVYDAVK--KGKGALVFVNTRRSAEKEALELAKKIK 263 (720)
T ss_pred chhc----------------c----------------h-HHHHHHHHHHHH--hCCCEEEEEcChHHHHHHHHHHHHHHH
Confidence 0000 0 0 001112222222 35789999999999998877664310
Q ss_pred -cC------------------------CCCCceEEEeccCCCChHhHHhhhCCCCCCCcEEEEeccccccccCCCCeEEE
Q 002552 579 -FL------------------------GDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVYV 633 (908)
Q Consensus 579 -~~------------------------~~~~~~~v~~lH~~l~~~er~~v~~~f~~g~~kIlvaT~iae~GidIp~v~~V 633 (908)
+. .......|.+|||+|++++|+.+++.|++|.++|||||+++++|||+|++++|
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vV 343 (720)
T PRK00254 264 RFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLGRTERVLIEDAFREGLIKVITATPTLSAGINLPAFRVI 343 (720)
T ss_pred HhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCHHHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEE
Confidence 00 00013469999999999999999999999999999999999999999999999
Q ss_pred EeCCCccceeeccccCccccccccccHhhHHHhccccCCC---CCcEEEEecChhh----HhhcCCCCCCccc------c
Q 002552 634 VDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRV---QPGVCYKLYPRII----HDAMLPYQLPEIL------R 700 (908)
Q Consensus 634 Id~g~~k~~~yd~~~~~~~l~~~~iS~~~~~QR~GRaGR~---~~G~~~~l~~~~~----~~~l~~~~~pei~------r 700 (908)
|... ..|+. ....+++..+|+||+|||||. ..|.|+.+.+... ++.+.. ..||-+ .
T Consensus 344 I~~~----~~~~~------~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~~~~~~~~~~~~~~-~~pe~l~s~l~~e 412 (720)
T PRK00254 344 IRDT----KRYSN------FGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIVATTEEPSKLMERYIF-GKPEKLFSMLSNE 412 (720)
T ss_pred ECCc----eEcCC------CCceeCCHHHHHHhhhccCCCCcCCCceEEEEecCcchHHHHHHHHh-CCchhhhccCCch
Confidence 9532 23431 112345678999999999997 4699999986432 333211 112111 1
Q ss_pred CchHHHHHHHhhcC-C---CchhhhhhccC---CCCC----HHHHHHHHHHHHHcCCCCCCC----CcCccccccccccC
Q 002552 701 TPLQELCLHIKSLQ-L---GTVGSFLSKAL---QPPD----PLAVQNAIELLKTIGALDDME----NLTPLGRHLCTLPV 765 (908)
Q Consensus 701 ~~L~~~~L~~~~l~-~---~~~~~fl~~~~---~~p~----~~~v~~al~~L~~~gal~~~~----~lT~lG~~~~~lpl 765 (908)
..|...++.....+ + .++.+||..++ ..|+ .+.++.++..|.+.++|+.++ .+|++|++++.++|
T Consensus 413 s~l~~~ll~~i~~~~~~~~~~~~~~l~~Tf~~~~~~~~~~~~~~v~~~l~~L~~~~~i~~~~~~~~~~t~lG~~~s~~~i 492 (720)
T PRK00254 413 SAFRSQVLALITNFGVSNFKELVNFLERTFYAHQRKDLYSLEEKAKEIVYFLLENEFIDIDLEDRFIPLPLGIRTSQLYI 492 (720)
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHhCHHHHhhcChHhHHHHHHHHHHHHHHCCCeEEcCCCCEeeChHHHHHHHHhC
Confidence 12333344433332 2 23344554433 2233 346788899999999996532 47999999999999
Q ss_pred CchhhHHHHHhhhc----cChHHHHHHHhhhccCCCCCCccccHHHHH----HHHHhhcCC-CC-C--------cHHHHH
Q 002552 766 DPNIGKMLLMGAIF----QCLNPALTIAAALAHRNPFVLPVNMQKEVD----EAKRSFAGD-SC-S--------DHIALL 827 (908)
Q Consensus 766 ~p~~~k~l~~~~~~----~c~~~~l~i~a~l~~~~~f~~p~~~~~~~~----~~~~~~~~~-~~-s--------D~l~~l 827 (908)
+|..++++..+..- .....++.++|....-.+.....++..... ....++... +. . .++...
T Consensus 493 ~~~t~~~~~~~l~~~~~~~~~~~~l~~~~~~~e~~~~~~r~~e~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~k~~ 572 (720)
T PRK00254 493 DPLTAKKFKDAFPKIEKNPNPLGIFQLIASTPDMTPLNYSRKEMEDLLDEAYEMEDRLYFNIPYWEDYKFQKFLRAFKTA 572 (720)
T ss_pred CHHHHHHHHHHHHhhccCCCHHHHHHHhhCCccccccCcchhhHHHHHHHHHhhcccccccCCcchhhHHHHHHHHHHHH
Confidence 99999998776532 345567777665543222222111211111 000011100 10 0 234455
Q ss_pred HHHHHHHHHHcCCcHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhC
Q 002552 828 KAFDGYKDAKRNRRERDFCWENFLSPITLQMMEDMRSQFLDLLSDI 873 (908)
Q Consensus 828 ~~f~~w~~~~~~~~~~~~c~~~~l~~~~l~~~~~~r~ql~~~l~~~ 873 (908)
-+.++|.+ +......++++.+.+..++.+.+...||+..+.++
T Consensus 573 ~ll~~~~~---~~~~~~~~~~~~~~~gd~~~~~~~~~~l~~a~~~i 615 (720)
T PRK00254 573 KVLLDWIN---EVPEGEIVETYNIDPGDLYRILELADWLMYSLIEL 615 (720)
T ss_pred HHHHHHHc---CCCHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHH
Confidence 67778886 33456678889999999999999999999888775
No 26
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.4e-44 Score=373.22 Aligned_cols=318 Identities=17% Similarity=0.224 Sum_probs=249.9
Q ss_pred CCCchHHHHHHHHHHHhCCeEEEEecCCCCccchHHHHHHHHHHhcc----CCCCcEEEEEcccHHHHHHHHHHHHHHhC
Q 002552 280 KLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSL----RGADCNIICTQPRRISAISVAARVSSERG 355 (908)
Q Consensus 280 ~lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~~~~il~~~~~~~----~~~~~~ilv~~P~r~la~qi~~rv~~~~~ 355 (908)
.-.++|+|.++||.+++|++++.+|+||+|||++++++-+.++..+. ...++.+||+.|||+||.|+.-.+.++..
T Consensus 240 FqKPtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLalqie~e~~kysy 319 (629)
T KOG0336|consen 240 FQKPTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQIEGEVKKYSY 319 (629)
T ss_pred CCCCCcchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHHHHHhHHhHhhh
Confidence 34556789999999999999999999999999999988666554321 23467899999999999999988888755
Q ss_pred CCCCCEEeEEe--ecc--ccCCCCCcEEEEchHHHHHHHhcCC-CCCcceEEEEechhccchhhHHHHHHHHHHCccCCC
Q 002552 356 ENLGETVGYQI--RLE--SKRSAQTRLLFCTTGVLLRQLVEDP-DLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPD 430 (908)
Q Consensus 356 ~~~g~~vg~~~--~~~--~~~~~~~~Iiv~T~g~Ll~~l~~~~-~l~~~~~iIiDEaHeR~~~~d~ll~~lk~~~~~~~~ 430 (908)
...-..+-|.. |.+ .....+.+|+++|||+|.++...+. +|..+++||||||| ||++++|..++.|.++..+|+
T Consensus 320 ng~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n~i~l~siTYlVlDEAD-rMLDMgFEpqIrkilldiRPD 398 (629)
T KOG0336|consen 320 NGLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDNVINLASITYLVLDEAD-RMLDMGFEPQIRKILLDIRPD 398 (629)
T ss_pred cCcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhcCeeeeeeeEEEEecchh-hhhcccccHHHHHHhhhcCCc
Confidence 44333344432 222 2235689999999999999988877 89999999999999 999999999999999999999
Q ss_pred CcEEEecccCChHH---HHhhhCCCCccccCCcc----ccceeeehhhHHHhhhcccCcccccccccccccccccchhhh
Q 002552 431 LRLILMSATINADL---FSKYFGNAPTVHIPGLT----FPVTDLFLEDVLEKTRYKMNSKLDSFQGNSRRSRRQDSKKDH 503 (908)
Q Consensus 431 ~qiIlmSAT~~~~~---~~~~f~~~~~i~v~~~~----~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (908)
.|+++.||||+... ...|+.++.++.+..-. ..|+..++-.
T Consensus 399 RqtvmTSATWP~~VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~i~v~-------------------------------- 446 (629)
T KOG0336|consen 399 RQTVMTSATWPEGVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQNIIVT-------------------------------- 446 (629)
T ss_pred ceeeeecccCchHHHHHHHHhhhCceEEEecccceeeeeeeeeeEEec--------------------------------
Confidence 99999999998763 56777766555443221 1122111100
Q ss_pred HhhhhhcccccccccchhhhhHhhHhhhhhhhhchHHHHHHHHHHHh-ccCCCcEEEecCCHHHHHHHHHHHHhcccCCC
Q 002552 504 LTALFEDVDIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICR-HEGDGAILVFLTGWNDISKLLDQIKVNKFLGD 582 (908)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~-~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~~~ 582 (908)
.|.+ ...++..+.. .....++||||..+..++.|...+.-
T Consensus 447 --------------------------------~d~~-k~~~~~~f~~~ms~ndKvIiFv~~K~~AD~LSSd~~l------ 487 (629)
T KOG0336|consen 447 --------------------------------TDSE-KLEIVQFFVANMSSNDKVIIFVSRKVMADHLSSDFCL------ 487 (629)
T ss_pred --------------------------------ccHH-HHHHHHHHHHhcCCCceEEEEEechhhhhhccchhhh------
Confidence 0000 1122222222 24567899999999998888777765
Q ss_pred CCceEEEeccCCCChHhHHhhhCCCCCCCcEEEEeccccccccCCCCeEEEEeCCCccceeeccccCccccccccccHhh
Q 002552 583 PNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETSYDALNKLACLLPSWISKAS 662 (908)
Q Consensus 583 ~~~~~v~~lH~~l~~~er~~v~~~f~~g~~kIlvaT~iae~GidIp~v~~VId~g~~k~~~yd~~~~~~~l~~~~iS~~~ 662 (908)
.++..-.|||+..|.+|+.+++.|++|+++||||||+|.+|||+|||++|+|||+|.+.. +
T Consensus 488 -~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~NyDFP~nIe------------------e 548 (629)
T KOG0336|consen 488 -KGISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLDVPDITHVYNYDFPRNIE------------------E 548 (629)
T ss_pred -cccchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhcceeeccCCCccHH------------------H
Confidence 456666799999999999999999999999999999999999999999999999999555 9
Q ss_pred HHHhccccCCC-CCcEEEEecChhhHh
Q 002552 663 AHQRRGRAGRV-QPGVCYKLYPRIIHD 688 (908)
Q Consensus 663 ~~QR~GRaGR~-~~G~~~~l~~~~~~~ 688 (908)
|+||+||+||+ +.|..+.+++..++.
T Consensus 549 YVHRvGrtGRaGr~G~sis~lt~~D~~ 575 (629)
T KOG0336|consen 549 YVHRVGRTGRAGRTGTSISFLTRNDWS 575 (629)
T ss_pred HHHHhcccccCCCCcceEEEEehhhHH
Confidence 99999999999 789999999987764
No 27
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=1.1e-42 Score=401.58 Aligned_cols=331 Identities=20% Similarity=0.197 Sum_probs=246.3
Q ss_pred hccChhHHHHHHhhcCCCchHHHHHHHHHHHhCCeEEEEecCCCCccchHHHHHHHHHHhccC----CCCcEEEEEcccH
Q 002552 265 LKSSDSGKAMLSFREKLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLR----GADCNIICTQPRR 340 (908)
Q Consensus 265 ~~~~~~~~~~~~~r~~lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~----~~~~~ilv~~P~r 340 (908)
+..++.+.+.+.....--++++|.++|+.+++++++|++||||||||++|.+++++.+..... ...+++||++|||
T Consensus 6 l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil~Ptr 85 (456)
T PRK10590 6 LGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTR 85 (456)
T ss_pred cCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEEeCcH
Confidence 334444444555555556789999999999999999999999999999999999988754321 1235799999999
Q ss_pred HHHHHHHHHHHHHhCCCCCCEEeEEeec------cccCCCCCcEEEEchHHHHHHHhcCC-CCCcceEEEEechhccchh
Q 002552 341 ISAISVAARVSSERGENLGETVGYQIRL------ESKRSAQTRLLFCTTGVLLRQLVEDP-DLSCVSHLLVDEIHERGMN 413 (908)
Q Consensus 341 ~la~qi~~rv~~~~~~~~g~~vg~~~~~------~~~~~~~~~Iiv~T~g~Ll~~l~~~~-~l~~~~~iIiDEaHeR~~~ 413 (908)
+||.|+++.+...... .+..+...... ......+++|+|+||++|++++.... .++++++||||||| +.++
T Consensus 86 eLa~Qi~~~~~~~~~~-~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah-~ll~ 163 (456)
T PRK10590 86 ELAAQIGENVRDYSKY-LNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEAD-RMLD 163 (456)
T ss_pred HHHHHHHHHHHHHhcc-CCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHH-HHhc
Confidence 9999999988765432 22222111111 11223468999999999999887766 79999999999999 6677
Q ss_pred hHHHHHHHHHHCccCCCCcEEEecccCChH--HH-HhhhCCCCccccCCcccc---ceeeehhhHHHhhhcccCcccccc
Q 002552 414 EDFLLIILRDLLPRRPDLRLILMSATINAD--LF-SKYFGNAPTVHIPGLTFP---VTDLFLEDVLEKTRYKMNSKLDSF 487 (908)
Q Consensus 414 ~d~ll~~lk~~~~~~~~~qiIlmSAT~~~~--~~-~~~f~~~~~i~v~~~~~~---v~~~~l~~~~~~~~~~~~~~~~~~ 487 (908)
.+|...+.+.+....++.|+++||||++.+ .+ ..++.++..+.+..+... +..++.
T Consensus 164 ~~~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~~~~~------------------ 225 (456)
T PRK10590 164 MGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVH------------------ 225 (456)
T ss_pred cccHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEecccccccceeEEEE------------------
Confidence 777766655555556678999999999765 23 344444333322211100 000000
Q ss_pred cccccccccccchhhhHhhhhhcccccccccchhhhhHhhHhhhhhhhhchHHHHHHHHHHHhccCCCcEEEecCCHHHH
Q 002552 488 QGNSRRSRRQDSKKDHLTALFEDVDIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICRHEGDGAILVFLTGWNDI 567 (908)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~~~~g~iLVF~~~~~~i 567 (908)
..+......++..+.......++||||+++.++
T Consensus 226 -----------------------------------------------~~~~~~k~~~l~~l~~~~~~~~~lVF~~t~~~~ 258 (456)
T PRK10590 226 -----------------------------------------------FVDKKRKRELLSQMIGKGNWQQVLVFTRTKHGA 258 (456)
T ss_pred -----------------------------------------------EcCHHHHHHHHHHHHHcCCCCcEEEEcCcHHHH
Confidence 000001223444455545567899999999999
Q ss_pred HHHHHHHHhcccCCCCCceEEEeccCCCChHhHHhhhCCCCCCCcEEEEeccccccccCCCCeEEEEeCCCccceeeccc
Q 002552 568 SKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETSYDAL 647 (908)
Q Consensus 568 ~~l~~~L~~~~~~~~~~~~~v~~lH~~l~~~er~~v~~~f~~g~~kIlvaT~iae~GidIp~v~~VId~g~~k~~~yd~~ 647 (908)
+.+++.|.. .++.+..+||+|++++|.++++.|++|+++|||||+++++|||||+|++||++++|.
T Consensus 259 ~~l~~~L~~-------~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~~~~P~------- 324 (456)
T PRK10590 259 NHLAEQLNK-------DGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPN------- 324 (456)
T ss_pred HHHHHHHHH-------CCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEEEEeCCCC-------
Confidence 999999987 467789999999999999999999999999999999999999999999999999998
Q ss_pred cCccccccccccHhhHHHhccccCCC-CCcEEEEecChhhH
Q 002552 648 NKLACLLPSWISKASAHQRRGRAGRV-QPGVCYKLYPRIIH 687 (908)
Q Consensus 648 ~~~~~l~~~~iS~~~~~QR~GRaGR~-~~G~~~~l~~~~~~ 687 (908)
+..+|+||+|||||. ..|.|+.|++..+.
T Consensus 325 -----------~~~~yvqR~GRaGR~g~~G~ai~l~~~~d~ 354 (456)
T PRK10590 325 -----------VPEDYVHRIGRTGRAAATGEALSLVCVDEH 354 (456)
T ss_pred -----------CHHHhhhhccccccCCCCeeEEEEecHHHH
Confidence 666999999999999 77999999987653
No 28
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=1.5e-42 Score=409.39 Aligned_cols=327 Identities=18% Similarity=0.194 Sum_probs=247.4
Q ss_pred cChhHHHHHHhhcCCCchHHHHHHHHHHHhCCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHH
Q 002552 267 SSDSGKAMLSFREKLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISV 346 (908)
Q Consensus 267 ~~~~~~~~~~~r~~lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi 346 (908)
.++.+.+.+.......++++|.++|+.+++++++|++||||||||+++.+++++.+... ...+++||++|||+||.|+
T Consensus 13 L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~--~~~~~~LIL~PTreLa~Qv 90 (629)
T PRK11634 13 LKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPE--LKAPQILVLAPTRELAVQV 90 (629)
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhc--cCCCeEEEEeCcHHHHHHH
Confidence 33444444444555678899999999999999999999999999999999999876432 2346899999999999999
Q ss_pred HHHHHHHhCCCCCCEEeEEeecc------ccCCCCCcEEEEchHHHHHHHhcCC-CCCcceEEEEechhccchhhHHHHH
Q 002552 347 AARVSSERGENLGETVGYQIRLE------SKRSAQTRLLFCTTGVLLRQLVEDP-DLSCVSHLLVDEIHERGMNEDFLLI 419 (908)
Q Consensus 347 ~~rv~~~~~~~~g~~vg~~~~~~------~~~~~~~~Iiv~T~g~Ll~~l~~~~-~l~~~~~iIiDEaHeR~~~~d~ll~ 419 (908)
++.+........+..+....... .....+++|+|+||++|++++..+. .++++++|||||||+ ++++.|...
T Consensus 91 ~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd~-ml~~gf~~d 169 (629)
T PRK11634 91 AEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADE-MLRMGFIED 169 (629)
T ss_pred HHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHHH-HhhcccHHH
Confidence 99887765443344333222111 1223478999999999999998776 799999999999995 477777766
Q ss_pred HHHHHCccCCCCcEEEecccCChHH---HHhhhCCCCccccCCcccc---ceeeehhhHHHhhhcccCcccccccccccc
Q 002552 420 ILRDLLPRRPDLRLILMSATINADL---FSKYFGNAPTVHIPGLTFP---VTDLFLEDVLEKTRYKMNSKLDSFQGNSRR 493 (908)
Q Consensus 420 ~lk~~~~~~~~~qiIlmSAT~~~~~---~~~~f~~~~~i~v~~~~~~---v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 493 (908)
+...+....+..|+++||||++... ...|+.++..+.+...... +...|..
T Consensus 170 i~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~~~~~~i~q~~~~----------------------- 226 (629)
T PRK11634 170 VETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWT----------------------- 226 (629)
T ss_pred HHHHHHhCCCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCccccCCceEEEEEE-----------------------
Confidence 6665555667889999999997653 4455555444433221100 1111100
Q ss_pred cccccchhhhHhhhhhcccccccccchhhhhHhhHhhhhhhhhchHHHHHHHHHHHhccCCCcEEEecCCHHHHHHHHHH
Q 002552 494 SRRQDSKKDHLTALFEDVDIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICRHEGDGAILVFLTGWNDISKLLDQ 573 (908)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~~~~g~iLVF~~~~~~i~~l~~~ 573 (908)
.. .......+..++.......+||||+++..++.+++.
T Consensus 227 --------------------------v~----------------~~~k~~~L~~~L~~~~~~~~IVF~~tk~~a~~l~~~ 264 (629)
T PRK11634 227 --------------------------VW----------------GMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEA 264 (629)
T ss_pred --------------------------ec----------------hhhHHHHHHHHHHhcCCCCEEEEeccHHHHHHHHHH
Confidence 00 000112233333344567899999999999999999
Q ss_pred HHhcccCCCCCceEEEeccCCCChHhHHhhhCCCCCCCcEEEEeccccccccCCCCeEEEEeCCCccceeeccccCcccc
Q 002552 574 IKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETSYDALNKLACL 653 (908)
Q Consensus 574 L~~~~~~~~~~~~~v~~lH~~l~~~er~~v~~~f~~g~~kIlvaT~iae~GidIp~v~~VId~g~~k~~~yd~~~~~~~l 653 (908)
|.. .++.+..+||+|++.+|+++++.|++|+.+|||||+++++|||+|+|++||++++|.
T Consensus 265 L~~-------~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~VI~~d~P~------------- 324 (629)
T PRK11634 265 LER-------NGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPM------------- 324 (629)
T ss_pred HHh-------CCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEEEEeCCCC-------------
Confidence 987 567889999999999999999999999999999999999999999999999999998
Q ss_pred ccccccHhhHHHhccccCCC-CCcEEEEecChhh
Q 002552 654 LPSWISKASAHQRRGRAGRV-QPGVCYKLYPRII 686 (908)
Q Consensus 654 ~~~~iS~~~~~QR~GRaGR~-~~G~~~~l~~~~~ 686 (908)
+.++|+||+|||||. +.|.|+.+++..+
T Consensus 325 -----~~e~yvqRiGRtGRaGr~G~ai~~v~~~e 353 (629)
T PRK11634 325 -----DSESYVHRIGRTGRAGRAGRALLFVENRE 353 (629)
T ss_pred -----CHHHHHHHhccccCCCCcceEEEEechHH
Confidence 666999999999999 6799999998754
No 29
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=4.3e-42 Score=403.50 Aligned_cols=326 Identities=18% Similarity=0.184 Sum_probs=239.6
Q ss_pred hhHHHHHHhhcCCCchHHHHHHHHHHHhCCeEEEEecCCCCccchHHHHHHHHHHhcc-----CCCCcEEEEEcccHHHH
Q 002552 269 DSGKAMLSFREKLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSL-----RGADCNIICTQPRRISA 343 (908)
Q Consensus 269 ~~~~~~~~~r~~lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~~~~il~~~~~~~-----~~~~~~ilv~~P~r~la 343 (908)
+.+.+.+.....-.++++|.++|+.+++++|++++||||||||++|.+++++.+.... ....+++||++|||+||
T Consensus 18 ~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raLIl~PTreLa 97 (572)
T PRK04537 18 PALLAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALILAPTRELA 97 (572)
T ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEEEEeCcHHHH
Confidence 3333444444455678899999999999999999999999999999999998876421 11247899999999999
Q ss_pred HHHHHHHHHHhCCCCCCEEeEEeeccc------cCCCCCcEEEEchHHHHHHHhcCC--CCCcceEEEEechhccchhhH
Q 002552 344 ISVAARVSSERGENLGETVGYQIRLES------KRSAQTRLLFCTTGVLLRQLVEDP--DLSCVSHLLVDEIHERGMNED 415 (908)
Q Consensus 344 ~qi~~rv~~~~~~~~g~~vg~~~~~~~------~~~~~~~Iiv~T~g~Ll~~l~~~~--~l~~~~~iIiDEaHeR~~~~d 415 (908)
.|+++.+.+. +...+..++....... ....+++|+|+||++|++++.... .+..+++||||||| +.++.+
T Consensus 98 ~Qi~~~~~~l-~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEAh-~lld~g 175 (572)
T PRK04537 98 IQIHKDAVKF-GADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEAD-RMFDLG 175 (572)
T ss_pred HHHHHHHHHH-hccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecCHH-HHhhcc
Confidence 9999987554 4445555544332211 123467999999999999987653 68899999999999 556666
Q ss_pred HHHHHHHHHCc--cCCCCcEEEecccCChHH---HHhhhCCCCccccCCcccc---ceeeehhhHHHhhhcccCcccccc
Q 002552 416 FLLIILRDLLP--RRPDLRLILMSATINADL---FSKYFGNAPTVHIPGLTFP---VTDLFLEDVLEKTRYKMNSKLDSF 487 (908)
Q Consensus 416 ~ll~~lk~~~~--~~~~~qiIlmSAT~~~~~---~~~~f~~~~~i~v~~~~~~---v~~~~l~~~~~~~~~~~~~~~~~~ 487 (908)
|...+...+.. .+.+.|+++||||++... ...++.+...+.+...... +...+..
T Consensus 176 f~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~----------------- 238 (572)
T PRK04537 176 FIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYF----------------- 238 (572)
T ss_pred hHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCcEEEeccccccccceeEEEEe-----------------
Confidence 66554333322 223689999999997653 3344433322222111100 0000000
Q ss_pred cccccccccccchhhhHhhhhhcccccccccchhhhhHhhHhhhhhhhhchHHHHHHHHHHHhccCCCcEEEecCCHHHH
Q 002552 488 QGNSRRSRRQDSKKDHLTALFEDVDIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICRHEGDGAILVFLTGWNDI 567 (908)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~~~~g~iLVF~~~~~~i 567 (908)
. .+ ......+..++......++||||+++..+
T Consensus 239 ----------------------------------~-------------~~-~~k~~~L~~ll~~~~~~k~LVF~nt~~~a 270 (572)
T PRK04537 239 ----------------------------------P-------------AD-EEKQTLLLGLLSRSEGARTMVFVNTKAFV 270 (572)
T ss_pred ----------------------------------c-------------CH-HHHHHHHHHHHhcccCCcEEEEeCCHHHH
Confidence 0 00 00112233344445567899999999999
Q ss_pred HHHHHHHHhcccCCCCCceEEEeccCCCChHhHHhhhCCCCCCCcEEEEeccccccccCCCCeEEEEeCCCccceeeccc
Q 002552 568 SKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETSYDAL 647 (908)
Q Consensus 568 ~~l~~~L~~~~~~~~~~~~~v~~lH~~l~~~er~~v~~~f~~g~~kIlvaT~iae~GidIp~v~~VId~g~~k~~~yd~~ 647 (908)
+.+++.|.. .++.+..+||+|++.+|+++++.|++|+.+|||||+++++|||||+|++||++++|.
T Consensus 271 e~l~~~L~~-------~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~V~~VInyd~P~------- 336 (572)
T PRK04537 271 ERVARTLER-------HGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYNYDLPF------- 336 (572)
T ss_pred HHHHHHHHH-------cCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccCCCEEEEcCCCC-------
Confidence 999999987 467899999999999999999999999999999999999999999999999999998
Q ss_pred cCccccccccccHhhHHHhccccCCC-CCcEEEEecChhh
Q 002552 648 NKLACLLPSWISKASAHQRRGRAGRV-QPGVCYKLYPRII 686 (908)
Q Consensus 648 ~~~~~l~~~~iS~~~~~QR~GRaGR~-~~G~~~~l~~~~~ 686 (908)
+..+|+||+|||||. ..|.|+.|++..+
T Consensus 337 -----------s~~~yvqRiGRaGR~G~~G~ai~~~~~~~ 365 (572)
T PRK04537 337 -----------DAEDYVHRIGRTARLGEEGDAISFACERY 365 (572)
T ss_pred -----------CHHHHhhhhcccccCCCCceEEEEecHHH
Confidence 666999999999999 7899999998754
No 30
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=5e-42 Score=400.81 Aligned_cols=347 Identities=18% Similarity=0.190 Sum_probs=247.0
Q ss_pred cccccccCCCCCCCchHHHhHHHHHHHHHHHhccChhHHHHHHhhcCCCchHHHHHHHHHHHhCCeEEEEecCCCCccch
Q 002552 234 LSVKVANTISPPQSDSAKERLNVILKERQEKLKSSDSGKAMLSFREKLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQ 313 (908)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~r~~lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~ 313 (908)
.|.+.|. |+.++....+...+.+.+.+ .....++++|.++|+.+++|+++|++||||||||++
T Consensus 112 ~g~~~p~----pi~~f~~~~l~~~l~~~L~~-------------~g~~~ptpiQ~~aip~il~g~dviv~ApTGSGKTla 174 (518)
T PLN00206 112 KGEAVPP----PILSFSSCGLPPKLLLNLET-------------AGYEFPTPIQMQAIPAALSGRSLLVSADTGSGKTAS 174 (518)
T ss_pred cCCCCCc----hhcCHHhCCCCHHHHHHHHH-------------cCCCCCCHHHHHHHHHHhcCCCEEEEecCCCCccHH
Confidence 3455554 55555555555555544433 334567889999999999999999999999999999
Q ss_pred HHHHHHHHHHhcc-----CCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCCEEeEEeecc------ccCCCCCcEEEEc
Q 002552 314 LPQFILEEELSSL-----RGADCNIICTQPRRISAISVAARVSSERGENLGETVGYQIRLE------SKRSAQTRLLFCT 382 (908)
Q Consensus 314 ~~~~il~~~~~~~-----~~~~~~ilv~~P~r~la~qi~~rv~~~~~~~~g~~vg~~~~~~------~~~~~~~~Iiv~T 382 (908)
|.++++.++.... ...++++||++|||+||.|+.+.+... ....+..+......+ .....+++|+|+|
T Consensus 175 yllPil~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Qi~~~~~~l-~~~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~T 253 (518)
T PLN00206 175 FLVPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQVEDQAKVL-GKGLPFKTALVVGGDAMPQQLYRIQQGVELIVGT 253 (518)
T ss_pred HHHHHHHHHHhhccccccccCCceEEEEeCCHHHHHHHHHHHHHH-hCCCCceEEEEECCcchHHHHHHhcCCCCEEEEC
Confidence 9999998765321 224578999999999999998877554 333332222111111 1223578999999
Q ss_pred hHHHHHHHhcCC-CCCcceEEEEechhccchhhHHHHHHHHHHCccCCCCcEEEecccCChH--HHHhhhCCCCc-cccC
Q 002552 383 TGVLLRQLVEDP-DLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILMSATINAD--LFSKYFGNAPT-VHIP 458 (908)
Q Consensus 383 ~g~Ll~~l~~~~-~l~~~~~iIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiIlmSAT~~~~--~~~~~f~~~~~-i~v~ 458 (908)
||+|++++.... .++++++||||||| ++++.+|...+.+.+ ...++.|+++||||++.+ .+..++...++ +.+.
T Consensus 254 PgrL~~~l~~~~~~l~~v~~lViDEad-~ml~~gf~~~i~~i~-~~l~~~q~l~~SATl~~~v~~l~~~~~~~~~~i~~~ 331 (518)
T PLN00206 254 PGRLIDLLSKHDIELDNVSVLVLDEVD-CMLERGFRDQVMQIF-QALSQPQVLLFSATVSPEVEKFASSLAKDIILISIG 331 (518)
T ss_pred HHHHHHHHHcCCccchheeEEEeecHH-HHhhcchHHHHHHHH-HhCCCCcEEEEEeeCCHHHHHHHHHhCCCCEEEEeC
Confidence 999999997765 89999999999999 667777766554443 333678999999999765 35555543332 2221
Q ss_pred Ccccc---ceeeehhhHHHhhhcccCcccccccccccccccccchhhhHhhhhhcccccccccchhhhhHhhHhhhhhhh
Q 002552 459 GLTFP---VTDLFLEDVLEKTRYKMNSKLDSFQGNSRRSRRQDSKKDHLTALFEDVDIDSNYKNYRASTRASLEAWSAEQ 535 (908)
Q Consensus 459 ~~~~~---v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (908)
....+ +...++ +.. ..+
T Consensus 332 ~~~~~~~~v~q~~~-----------------------~~~----~~~--------------------------------- 351 (518)
T PLN00206 332 NPNRPNKAVKQLAI-----------------------WVE----TKQ--------------------------------- 351 (518)
T ss_pred CCCCCCcceeEEEE-----------------------ecc----chh---------------------------------
Confidence 11100 000000 000 000
Q ss_pred hchHHHHHHHHHHHhccCCCcEEEecCCHHHHHHHHHHHHhcccCCCCCceEEEeccCCCChHhHHhhhCCCCCCCcEEE
Q 002552 536 IDLGLVESTIEYICRHEGDGAILVFLTGWNDISKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIV 615 (908)
Q Consensus 536 ~~~~li~~~l~~i~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lH~~l~~~er~~v~~~f~~g~~kIl 615 (908)
....+..++... ....+++||||+++..++.+++.|... .++.+..+||++++++|.++++.|++|+.+||
T Consensus 352 -k~~~l~~~l~~~--~~~~~~~iVFv~s~~~a~~l~~~L~~~------~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~IL 422 (518)
T PLN00206 352 -KKQKLFDILKSK--QHFKPPAVVFVSSRLGADLLANAITVV------TGLKALSIHGEKSMKERREVMKSFLVGEVPVI 422 (518)
T ss_pred -HHHHHHHHHHhh--cccCCCEEEEcCCchhHHHHHHHHhhc------cCcceEEeeCCCCHHHHHHHHHHHHCCCCCEE
Confidence 000011112111 122468999999999999999988752 35778999999999999999999999999999
Q ss_pred EeccccccccCCCCeEEEEeCCCccceeeccccCccccccccccHhhHHHhccccCCC-CCcEEEEecChhhH
Q 002552 616 LATNIAESSITIDDVVYVVDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRV-QPGVCYKLYPRIIH 687 (908)
Q Consensus 616 vaT~iae~GidIp~v~~VId~g~~k~~~yd~~~~~~~l~~~~iS~~~~~QR~GRaGR~-~~G~~~~l~~~~~~ 687 (908)
|||+++++|||+|+|++||++|+|. |..+|+||+|||||. ..|.++.|++.++.
T Consensus 423 VaTdvl~rGiDip~v~~VI~~d~P~------------------s~~~yihRiGRaGR~g~~G~ai~f~~~~~~ 477 (518)
T PLN00206 423 VATGVLGRGVDLLRVRQVIIFDMPN------------------TIKEYIHQIGRASRMGEKGTAIVFVNEEDR 477 (518)
T ss_pred EEecHhhccCCcccCCEEEEeCCCC------------------CHHHHHHhccccccCCCCeEEEEEEchhHH
Confidence 9999999999999999999999998 677999999999999 67999999987653
No 31
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=7.8e-42 Score=393.80 Aligned_cols=335 Identities=21% Similarity=0.236 Sum_probs=251.3
Q ss_pred HHhccChhHHHHHHhhcCCCchHHHHHHHHHHHhCCeEEEEecCCCCccchHHHHHHHHHHhcc--CCCCcEEEEEcccH
Q 002552 263 EKLKSSDSGKAMLSFREKLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSL--RGADCNIICTQPRR 340 (908)
Q Consensus 263 ~~~~~~~~~~~~~~~r~~lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~~~~il~~~~~~~--~~~~~~ilv~~P~r 340 (908)
+.+...+.+.+.+.......++++|.++++.++++++++++||||||||+++.+++++.+.... ....+++||++||+
T Consensus 4 ~~l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~Pt~ 83 (434)
T PRK11192 4 SELELDESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTPTR 83 (434)
T ss_pred hhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECCcH
Confidence 3444555555666666667788999999999999999999999999999999999998775421 22346899999999
Q ss_pred HHHHHHHHHHHHHhCCCCCCEEeEEeec------cccCCCCCcEEEEchHHHHHHHhcCC-CCCcceEEEEechhccchh
Q 002552 341 ISAISVAARVSSERGENLGETVGYQIRL------ESKRSAQTRLLFCTTGVLLRQLVEDP-DLSCVSHLLVDEIHERGMN 413 (908)
Q Consensus 341 ~la~qi~~rv~~~~~~~~g~~vg~~~~~------~~~~~~~~~Iiv~T~g~Ll~~l~~~~-~l~~~~~iIiDEaHeR~~~ 413 (908)
+||.|+++.+.... ...+..++..... ......+++|+|+|||+|++++.... .+.++++||||||| ++++
T Consensus 84 eLa~Q~~~~~~~l~-~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah-~~l~ 161 (434)
T PRK11192 84 ELAMQVADQARELA-KHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEAD-RMLD 161 (434)
T ss_pred HHHHHHHHHHHHHH-ccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHH-HHhC
Confidence 99999998876543 2333444333221 11223468999999999999998776 68999999999999 7777
Q ss_pred hHHHHHHHHHHCccCCCCcEEEecccCChHH---HHhhhCCCCc-cccCCccc---cceeeehhhHHHhhhcccCccccc
Q 002552 414 EDFLLIILRDLLPRRPDLRLILMSATINADL---FSKYFGNAPT-VHIPGLTF---PVTDLFLEDVLEKTRYKMNSKLDS 486 (908)
Q Consensus 414 ~d~ll~~lk~~~~~~~~~qiIlmSAT~~~~~---~~~~f~~~~~-i~v~~~~~---~v~~~~l~~~~~~~~~~~~~~~~~ 486 (908)
+.|...+.......+...|+++||||++.+. +..++...++ +.+..... .+...|.
T Consensus 162 ~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~----------------- 224 (434)
T PRK11192 162 MGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSRRERKKIHQWYY----------------- 224 (434)
T ss_pred CCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCCcccccCceEEEE-----------------
Confidence 7776665555545556789999999997553 4444433221 11110000 0000000
Q ss_pred ccccccccccccchhhhHhhhhhcccccccccchhhhhHhhHhhhhhhhhchHHHHHHHHHHHhccCCCcEEEecCCHHH
Q 002552 487 FQGNSRRSRRQDSKKDHLTALFEDVDIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICRHEGDGAILVFLTGWND 566 (908)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~~~~g~iLVF~~~~~~ 566 (908)
...+......++..+......+++||||+++++
T Consensus 225 -----------------------------------------------~~~~~~~k~~~l~~l~~~~~~~~~lVF~~s~~~ 257 (434)
T PRK11192 225 -----------------------------------------------RADDLEHKTALLCHLLKQPEVTRSIVFVRTRER 257 (434)
T ss_pred -----------------------------------------------EeCCHHHHHHHHHHHHhcCCCCeEEEEeCChHH
Confidence 000001133455556555567899999999999
Q ss_pred HHHHHHHHHhcccCCCCCceEEEeccCCCChHhHHhhhCCCCCCCcEEEEeccccccccCCCCeEEEEeCCCccceeecc
Q 002552 567 ISKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETSYDA 646 (908)
Q Consensus 567 i~~l~~~L~~~~~~~~~~~~~v~~lH~~l~~~er~~v~~~f~~g~~kIlvaT~iae~GidIp~v~~VId~g~~k~~~yd~ 646 (908)
++.+++.|.. .++.+..+||+|++.+|..+++.|++|.++|||||+++++|||||+|++||++++|.
T Consensus 258 ~~~l~~~L~~-------~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~VI~~d~p~------ 324 (434)
T PRK11192 258 VHELAGWLRK-------AGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSHVINFDMPR------ 324 (434)
T ss_pred HHHHHHHHHh-------CCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCCEEEEECCCC------
Confidence 9999999987 467799999999999999999999999999999999999999999999999999998
Q ss_pred ccCccccccccccHhhHHHhccccCCC-CCcEEEEecChhhHh
Q 002552 647 LNKLACLLPSWISKASAHQRRGRAGRV-QPGVCYKLYPRIIHD 688 (908)
Q Consensus 647 ~~~~~~l~~~~iS~~~~~QR~GRaGR~-~~G~~~~l~~~~~~~ 688 (908)
|...|+||+|||||. ..|.++.|++..++.
T Consensus 325 ------------s~~~yiqr~GR~gR~g~~g~ai~l~~~~d~~ 355 (434)
T PRK11192 325 ------------SADTYLHRIGRTGRAGRKGTAISLVEAHDHL 355 (434)
T ss_pred ------------CHHHHhhcccccccCCCCceEEEEecHHHHH
Confidence 667999999999999 779999999876654
No 32
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=2.5e-42 Score=368.65 Aligned_cols=342 Identities=17% Similarity=0.152 Sum_probs=263.1
Q ss_pred HHHHHhccChhHHHHHHhhcCCCchHHHHHHHHHHHhCCeEEEEecCCCCccchHHHHHHHHHHhccC--CCCcEEEEEc
Q 002552 260 ERQEKLKSSDSGKAMLSFREKLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLR--GADCNIICTQ 337 (908)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~r~~lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~--~~~~~ilv~~ 337 (908)
..+.....++...+.++......++++|+..|+.++.|+++++.|.||||||++|+++..+.++.... .....++|+.
T Consensus 82 ~~f~~~~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi~ 161 (543)
T KOG0342|consen 82 FRFEEGSLSPLTLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLIIC 161 (543)
T ss_pred hHhhccccCHHHHHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEec
Confidence 34556677777778888888889999999999999999999999999999999999999998875432 2345688889
Q ss_pred ccHHHHHHHHHHHHHHhCCCCCCEEeEEeecccc------CCCCCcEEEEchHHHHHHHhcCC--CCCcceEEEEechhc
Q 002552 338 PRRISAISVAARVSSERGENLGETVGYQIRLESK------RSAQTRLLFCTTGVLLRQLVEDP--DLSCVSHLLVDEIHE 409 (908)
Q Consensus 338 P~r~la~qi~~rv~~~~~~~~g~~vg~~~~~~~~------~~~~~~Iiv~T~g~Ll~~l~~~~--~l~~~~~iIiDEaHe 409 (908)
|||+||.|++..+.+.+....+..|++.+...+. ...++.|+|+|||+|+++|++.+ ...+..++|+||||
T Consensus 162 PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEAD- 240 (543)
T KOG0342|consen 162 PTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEAD- 240 (543)
T ss_pred ccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEeecch-
Confidence 9999999999988887776657777777655433 23489999999999999999876 56778999999999
Q ss_pred cchhhHHHHHHHHHHCccCCCCcEEEecccCChHH--HHhh-hCCCC-ccccCCccccceeeehhhHHHhhhcccCcccc
Q 002552 410 RGMNEDFLLIILRDLLPRRPDLRLILMSATINADL--FSKY-FGNAP-TVHIPGLTFPVTDLFLEDVLEKTRYKMNSKLD 485 (908)
Q Consensus 410 R~~~~d~ll~~lk~~~~~~~~~qiIlmSAT~~~~~--~~~~-f~~~~-~i~v~~~~~~v~~~~l~~~~~~~~~~~~~~~~ 485 (908)
|-++++|-..+.+++-......|.+++|||.+.+. ++.. +...+ .+.+.+..-+.+.
T Consensus 241 rlLd~GF~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~Th------------------- 301 (543)
T KOG0342|consen 241 RLLDIGFEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETH------------------- 301 (543)
T ss_pred hhhhcccHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchh-------------------
Confidence 88999999998888777778899999999998763 2221 11111 1211111111000
Q ss_pred cccccccccccccchhhhHhhhhhcccccccccchhhhhHhhHhhhhhhhhchHHHHHHHHHHHhccCCCcEEEecCCHH
Q 002552 486 SFQGNSRRSRRQDSKKDHLTALFEDVDIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICRHEGDGAILVFLTGWN 565 (908)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~~~~g~iLVF~~~~~ 565 (908)
+.+.+.+- +.. .... ...++..+.++....+|+||++|..
T Consensus 302 ----------------e~l~Qgyv---v~~------------------~~~~---f~ll~~~LKk~~~~~KiiVF~sT~~ 341 (543)
T KOG0342|consen 302 ----------------ERLEQGYV---VAP------------------SDSR---FSLLYTFLKKNIKRYKIIVFFSTCM 341 (543)
T ss_pred ----------------hcccceEE---ecc------------------ccch---HHHHHHHHHHhcCCceEEEEechhh
Confidence 00000000 000 0000 1122223333333378999999999
Q ss_pred HHHHHHHHHHhcccCCCCCceEEEeccCCCChHhHHhhhCCCCCCCcEEEEeccccccccCCCCeEEEEeCCCccceeec
Q 002552 566 DISKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETSYD 645 (908)
Q Consensus 566 ~i~~l~~~L~~~~~~~~~~~~~v~~lH~~l~~~er~~v~~~f~~g~~kIlvaT~iae~GidIp~v~~VId~g~~k~~~yd 645 (908)
.+..+++.|.. ..+.|..+||.++|..|..++..|+.-+.-|||||||++||+|+|+|+.||.+|.|.+..
T Consensus 342 ~vk~~~~lL~~-------~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P~V~~VvQ~~~P~d~~-- 412 (543)
T KOG0342|consen 342 SVKFHAELLNY-------IDLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDIPDVDWVVQYDPPSDPE-- 412 (543)
T ss_pred HHHHHHHHHhh-------cCCchhhhhcCCcccccchHHHHHhhcccceEEecchhhccCCCCCceEEEEeCCCCCHH--
Confidence 99999999986 677899999999999999999999999999999999999999999999999999999544
Q ss_pred cccCccccccccccHhhHHHhccccCCC-CCcEEEEecChhh
Q 002552 646 ALNKLACLLPSWISKASAHQRRGRAGRV-QPGVCYKLYPRII 686 (908)
Q Consensus 646 ~~~~~~~l~~~~iS~~~~~QR~GRaGR~-~~G~~~~l~~~~~ 686 (908)
+|+||+|||||. ..|.++.+..+++
T Consensus 413 ----------------~YIHRvGRTaR~gk~G~alL~l~p~E 438 (543)
T KOG0342|consen 413 ----------------QYIHRVGRTAREGKEGKALLLLAPWE 438 (543)
T ss_pred ----------------HHHHHhccccccCCCceEEEEeChhH
Confidence 999999999999 7799999988754
No 33
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.7e-42 Score=341.88 Aligned_cols=338 Identities=16% Similarity=0.223 Sum_probs=254.9
Q ss_pred CCCchHHHhHHHHHHHHHHHhccChhHHHHHHhhcCCCchHHHHHHHHHHHhCCeEEEEecCCCCccchHHHHHHHHHHh
Q 002552 245 PQSDSAKERLNVILKERQEKLKSSDSGKAMLSFREKLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELS 324 (908)
Q Consensus 245 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~r~~lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~~~~il~~~~~ 324 (908)
.++++....+.+.|....-.+.+.. +..+|+.+++.|++|++||++|+.|+|||..+..-++...-.
T Consensus 25 v~~~F~~Mgl~edlLrgiY~yGfek-------------PS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~ 91 (400)
T KOG0328|consen 25 VIPTFDDMGLKEDLLRGIYAYGFEK-------------PSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDI 91 (400)
T ss_pred cccchhhcCchHHHHHHHHHhccCC-------------chHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeeccc
Confidence 4566777777877777666555443 346999999999999999999999999997776666654322
Q ss_pred ccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCCEEeEEeecc------ccCCCCCcEEEEchHHHHHHHhcCC-CCC
Q 002552 325 SLRGADCNIICTQPRRISAISVAARVSSERGENLGETVGYQIRLE------SKRSAQTRLLFCTTGVLLRQLVEDP-DLS 397 (908)
Q Consensus 325 ~~~~~~~~ilv~~P~r~la~qi~~rv~~~~~~~~g~~vg~~~~~~------~~~~~~~~Iiv~T~g~Ll~~l~~~~-~l~ 397 (908)
. .....++|+.|||+||.|+.+.+.. ++...+..+--.+... .+..-+.+++..|||++++++.... .-.
T Consensus 92 ~--~r~tQ~lilsPTRELa~Qi~~vi~a-lg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~L~tr 168 (400)
T KOG0328|consen 92 S--VRETQALILSPTRELAVQIQKVILA-LGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRSLRTR 168 (400)
T ss_pred c--cceeeEEEecChHHHHHHHHHHHHH-hcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhcccccc
Confidence 1 2246899999999999999876644 4444443332222221 1233588999999999999998876 678
Q ss_pred cceEEEEechhccchhhHHHHHHHHHHCccCCCCcEEEecccCChHHHH--hhhCCCCc-cccCCcccc---ceeeehhh
Q 002552 398 CVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILMSATINADLFS--KYFGNAPT-VHIPGLTFP---VTDLFLED 471 (908)
Q Consensus 398 ~~~~iIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiIlmSAT~~~~~~~--~~f~~~~~-i~v~~~~~~---v~~~~l~~ 471 (908)
.+.+||+|||||. ++..|-.++........|+.|++++|||++.+.+. +.|...|+ +.+.-...+ ++.+|+.
T Consensus 169 ~vkmlVLDEaDem-L~kgfk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrdeltlEgIKqf~v~- 246 (400)
T KOG0328|consen 169 AVKMLVLDEADEM-LNKGFKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDELTLEGIKQFFVA- 246 (400)
T ss_pred ceeEEEeccHHHH-HHhhHHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEecCCCchhhhhhheee-
Confidence 8999999999964 77788888888887888999999999999988643 45544432 222211111 1122211
Q ss_pred HHHhhhcccCcccccccccccccccccchhhhHhhhhhcccccccccchhhhhHhhHhhhhhhhhchHHHHHHHHHHHhc
Q 002552 472 VLEKTRYKMNSKLDSFQGNSRRSRRQDSKKDHLTALFEDVDIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICRH 551 (908)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~ 551 (908)
..+++.+. +.++.+...
T Consensus 247 ----------------------ve~EewKf-----------------------------------------dtLcdLYd~ 263 (400)
T KOG0328|consen 247 ----------------------VEKEEWKF-----------------------------------------DTLCDLYDT 263 (400)
T ss_pred ----------------------echhhhhH-----------------------------------------hHHHHHhhh
Confidence 00111122 233333333
Q ss_pred cCCCcEEEecCCHHHHHHHHHHHHhcccCCCCCceEEEeccCCCChHhHHhhhCCCCCCCcEEEEeccccccccCCCCeE
Q 002552 552 EGDGAILVFLTGWNDISKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVV 631 (908)
Q Consensus 552 ~~~g~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lH~~l~~~er~~v~~~f~~g~~kIlvaT~iae~GidIp~v~ 631 (908)
..-.+.+|||+|++.++.|.+.+++ ..+.|.++||+|+++||+++...|++|+.+||++|||-+||+|+|.|.
T Consensus 264 LtItQavIFcnTk~kVdwLtekm~~-------~nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~qVs 336 (400)
T KOG0328|consen 264 LTITQAVIFCNTKRKVDWLTEKMRE-------ANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQQVS 336 (400)
T ss_pred hehheEEEEecccchhhHHHHHHHh-------hCceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCCcceeE
Confidence 3345689999999999999999998 678899999999999999999999999999999999999999999999
Q ss_pred EEEeCCCccceeeccccCccccccccccHhhHHHhccccCCC-CCcEEEEecChhhHh
Q 002552 632 YVVDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRV-QPGVCYKLYPRIIHD 688 (908)
Q Consensus 632 ~VId~g~~k~~~yd~~~~~~~l~~~~iS~~~~~QR~GRaGR~-~~G~~~~l~~~~~~~ 688 (908)
+|||||+|.+. +.|+||+||.||. +.|.++.|...++..
T Consensus 337 lviNYDLP~nr------------------e~YIHRIGRSGRFGRkGvainFVk~~d~~ 376 (400)
T KOG0328|consen 337 LVINYDLPNNR------------------ELYIHRIGRSGRFGRKGVAINFVKSDDLR 376 (400)
T ss_pred EEEecCCCccH------------------HHHhhhhccccccCCcceEEEEecHHHHH
Confidence 99999999844 4999999999999 889999999887543
No 34
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.1e-41 Score=358.70 Aligned_cols=344 Identities=18% Similarity=0.148 Sum_probs=256.2
Q ss_pred hhHHHHHHhhcCCCchHHHHHHHHHHHhCCeEEEEecCCCCccchHHHHHHHHHHhccC-CC--CcEEEEEcccHHHHHH
Q 002552 269 DSGKAMLSFREKLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLR-GA--DCNIICTQPRRISAIS 345 (908)
Q Consensus 269 ~~~~~~~~~r~~lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~-~~--~~~ilv~~P~r~la~q 345 (908)
+.+.+.+.....--.+|.|...||.+++++||++.|+||||||++|.+|+++.++.... .+ ..-.||+.||||||.|
T Consensus 15 ~~l~~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalIIsPTRELa~Q 94 (567)
T KOG0345|consen 15 PWLLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALIISPTRELARQ 94 (567)
T ss_pred HHHHHHHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEEecCcHHHHHH
Confidence 44444555555556788999999999999999999999999999999999998865432 22 2357899999999999
Q ss_pred HHHHHHHHhCC----CCCCEEeEE-eecc--ccCCCCCcEEEEchHHHHHHHhcCC---CCCcceEEEEechhccchhhH
Q 002552 346 VAARVSSERGE----NLGETVGYQ-IRLE--SKRSAQTRLLFCTTGVLLRQLVEDP---DLSCVSHLLVDEIHERGMNED 415 (908)
Q Consensus 346 i~~rv~~~~~~----~~g~~vg~~-~~~~--~~~~~~~~Iiv~T~g~Ll~~l~~~~---~l~~~~~iIiDEaHeR~~~~d 415 (908)
|.+.+..+... ..-..||-. +..+ ....+++.|+|+|||+|++++++.. .+.++.++|+|||| |-++++
T Consensus 95 I~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLDEAD-rLldmg 173 (567)
T KOG0345|consen 95 IREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVLDEAD-RLLDMG 173 (567)
T ss_pred HHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEecchH-hHhccc
Confidence 98765544322 122233332 1111 1123578999999999999998844 44599999999999 889999
Q ss_pred HHHHHHHHHCccCCCCcEEEecccCChH--H-HHhhhCCCCccccCCcc---cc--ceeeehhhHHHhhhcccCcccccc
Q 002552 416 FLLIILRDLLPRRPDLRLILMSATINAD--L-FSKYFGNAPTVHIPGLT---FP--VTDLFLEDVLEKTRYKMNSKLDSF 487 (908)
Q Consensus 416 ~ll~~lk~~~~~~~~~qiIlmSAT~~~~--~-~~~~f~~~~~i~v~~~~---~~--v~~~~l~~~~~~~~~~~~~~~~~~ 487 (908)
|...+-.++.....++++=++|||.+.+ . +...+.|+..+.|.... .| +..+|+.
T Consensus 174 Fe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v----------------- 236 (567)
T KOG0345|consen 174 FEASVNTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLV----------------- 236 (567)
T ss_pred HHHHHHHHHHhcccccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeE-----------------
Confidence 9999888888888889999999999544 2 33444455444443222 12 2222221
Q ss_pred cccccccccccchhhhHhhhhhcccccccccchhhhhHhhHhhhhhhhhchHHHHHHHHHHHhccCCCcEEEecCCHHHH
Q 002552 488 QGNSRRSRRQDSKKDHLTALFEDVDIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICRHEGDGAILVFLTGWNDI 567 (908)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~~~~g~iLVF~~~~~~i 567 (908)
...+.....+.+++.+....++|||.+|...+
T Consensus 237 ------------------------------------------------~~a~eK~~~lv~~L~~~~~kK~iVFF~TCasV 268 (567)
T KOG0345|consen 237 ------------------------------------------------CEADEKLSQLVHLLNNNKDKKCIVFFPTCASV 268 (567)
T ss_pred ------------------------------------------------ecHHHHHHHHHHHHhccccccEEEEecCcchH
Confidence 00111223444555556778999999999999
Q ss_pred HHHHHHHHhcccCCCCCceEEEeccCCCChHhHHhhhCCCCCCCcEEEEeccccccccCCCCeEEEEeCCCccceeeccc
Q 002552 568 SKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETSYDAL 647 (908)
Q Consensus 568 ~~l~~~L~~~~~~~~~~~~~v~~lH~~l~~~er~~v~~~f~~g~~kIlvaT~iae~GidIp~v~~VId~g~~k~~~yd~~ 647 (908)
+.....+... .....++.+||.|.+.+|..++..|+.-...+++|||||+||||||+|++||++|.|++..
T Consensus 269 eYf~~~~~~~-----l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGlDip~iD~VvQ~DpP~~~~---- 339 (567)
T KOG0345|consen 269 EYFGKLFSRL-----LKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGLDIPGIDLVVQFDPPKDPS---- 339 (567)
T ss_pred HHHHHHHHHH-----hCCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhccCCCCCceEEEecCCCCChh----
Confidence 9888887753 1567899999999999999999999998889999999999999999999999999999555
Q ss_pred cCccccccccccHhhHHHhccccCCC-CCcEEEEecCh--hhHhh-cCCCCCCccccC
Q 002552 648 NKLACLLPSWISKASAHQRRGRAGRV-QPGVCYKLYPR--IIHDA-MLPYQLPEILRT 701 (908)
Q Consensus 648 ~~~~~l~~~~iS~~~~~QR~GRaGR~-~~G~~~~l~~~--~~~~~-l~~~~~pei~r~ 701 (908)
+|+||+|||||. +.|.++.|..+ +.|-. |.-...|++.+.
T Consensus 340 --------------~FvHR~GRTaR~gr~G~Aivfl~p~E~aYveFl~i~~~v~le~~ 383 (567)
T KOG0345|consen 340 --------------SFVHRCGRTARAGREGNAIVFLNPREEAYVEFLRIKGKVELERI 383 (567)
T ss_pred --------------HHHhhcchhhhccCccceEEEecccHHHHHHHHHhcCccchhhh
Confidence 999999999999 77998888765 34543 444556665544
No 35
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-41 Score=365.85 Aligned_cols=343 Identities=17% Similarity=0.211 Sum_probs=263.4
Q ss_pred HHHHhccChhHHHHHHhhcCCCchHHHHHHHHHHHhCCeEEEEecCCCCccchHHHHHHHHHHhcc--CCCCcEEEEEcc
Q 002552 261 RQEKLKSSDSGKAMLSFREKLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSL--RGADCNIICTQP 338 (908)
Q Consensus 261 ~~~~~~~~~~~~~~~~~r~~lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~~~~il~~~~~~~--~~~~~~ilv~~P 338 (908)
.+..++.+....+-++.-....++.+|.+.|+..+.|++|+..|.||||||++|+.|+++.++... ...+.-+||+.|
T Consensus 70 kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalIISP 149 (758)
T KOG0343|consen 70 KFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALIISP 149 (758)
T ss_pred hHHhCCCchHHHHhHhhcCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeEEecc
Confidence 345566777777778888888999999999999999999999999999999999999999998643 223445788889
Q ss_pred cHHHHHHHHHHHHHH---hCCCCCCEEeEE-eeccccCCCCCcEEEEchHHHHHHHhcCC--CCCcceEEEEechhccch
Q 002552 339 RRISAISVAARVSSE---RGENLGETVGYQ-IRLESKRSAQTRLLFCTTGVLLRQLVEDP--DLSCVSHLLVDEIHERGM 412 (908)
Q Consensus 339 ~r~la~qi~~rv~~~---~~~~~g~~vg~~-~~~~~~~~~~~~Iiv~T~g~Ll~~l~~~~--~l~~~~~iIiDEaHeR~~ 412 (908)
||+||.|++..+.+. .....|..+|-. +.++...-...+|+|||||+||++|...+ ..+++.++|+|||| |++
T Consensus 150 TRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eRi~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEAD-R~L 228 (758)
T KOG0343|consen 150 TRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELERISQMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEAD-RML 228 (758)
T ss_pred hHHHHHHHHHHHHHHhhccccccceeecCchhHHHHHhhhcCCeEEechHHHHHHhhhcCCCCCCcceEEEeccHH-HHH
Confidence 999999999776553 233445555432 34444444578999999999999999888 56789999999999 999
Q ss_pred hhHHHHHHHHHHCccCCCCcEEEecccCCh--HHHHhhhC-CCCccccCCccccceeeehhhHHHhhhcccCcccccccc
Q 002552 413 NEDFLLIILRDLLPRRPDLRLILMSATINA--DLFSKYFG-NAPTVHIPGLTFPVTDLFLEDVLEKTRYKMNSKLDSFQG 489 (908)
Q Consensus 413 ~~d~ll~~lk~~~~~~~~~qiIlmSAT~~~--~~~~~~f~-~~~~i~v~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~ 489 (908)
+|+|-..+-.++....+..|+++||||-.. ..+++.-- ++..+.+.... .
T Consensus 229 DMGFk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a----~----------------------- 281 (758)
T KOG0343|consen 229 DMGFKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENA----V----------------------- 281 (758)
T ss_pred HHhHHHHHHHHHHhCChhheeeeeecccchhHHHHHHhhcCCCcEEEEeccc----c-----------------------
Confidence 999998887778788889999999999843 34555433 33333221000 0
Q ss_pred cccccccccchhhhHhhhhhcccccccccchhhhhHhhHhhhhhhhhchHHHHHHHHHHHhccCCCcEEEecCCHHHHHH
Q 002552 490 NSRRSRRQDSKKDHLTALFEDVDIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICRHEGDGAILVFLTGWNDISK 569 (908)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~~~~g~iLVF~~~~~~i~~ 569 (908)
......+.+.|-.+ +......++.....+....++|||+.+.+++..
T Consensus 282 --------~atP~~L~Q~y~~v-------------------------~l~~Ki~~L~sFI~shlk~K~iVF~SscKqvkf 328 (758)
T KOG0343|consen 282 --------AATPSNLQQSYVIV-------------------------PLEDKIDMLWSFIKSHLKKKSIVFLSSCKQVKF 328 (758)
T ss_pred --------ccChhhhhheEEEE-------------------------ehhhHHHHHHHHHHhccccceEEEEehhhHHHH
Confidence 00001111111100 011122344444455667789999999999999
Q ss_pred HHHHHHhcccCCCCCceEEEeccCCCChHhHHhhhCCCCCCCcEEEEeccccccccCCCCeEEEEeCCCccceeeccccC
Q 002552 570 LLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETSYDALNK 649 (908)
Q Consensus 570 l~~~L~~~~~~~~~~~~~v~~lH~~l~~~er~~v~~~f~~g~~kIlvaT~iae~GidIp~v~~VId~g~~k~~~yd~~~~ 649 (908)
+++.++... .+..++.|||.|.|..|.+++..|-..+--||+||||++||+|+|.|++||.+|.|-
T Consensus 329 ~~e~F~rlr-----pg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFpaVdwViQ~DCPe--------- 394 (758)
T KOG0343|consen 329 LYEAFCRLR-----PGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDFPAVDWVIQVDCPE--------- 394 (758)
T ss_pred HHHHHHhcC-----CCCceeeeccchhHHHHHHHHHHHHHhcceEEEeehhhhccCCCcccceEEEecCch---------
Confidence 999998743 678899999999999999999999888889999999999999999999999999998
Q ss_pred ccccccccccHhhHHHhccccCCC-CCcEEEEecChhhH
Q 002552 650 LACLLPSWISKASAHQRRGRAGRV-QPGVCYKLYPRIIH 687 (908)
Q Consensus 650 ~~~l~~~~iS~~~~~QR~GRaGR~-~~G~~~~l~~~~~~ 687 (908)
..++|+||+||+.|. ..|.|+.+.++...
T Consensus 395 ---------dv~tYIHRvGRtAR~~~~G~sll~L~psEe 424 (758)
T KOG0343|consen 395 ---------DVDTYIHRVGRTARYKERGESLLMLTPSEE 424 (758)
T ss_pred ---------hHHHHHHHhhhhhcccCCCceEEEEcchhH
Confidence 445999999999999 77999999987653
No 36
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=7.7e-41 Score=388.92 Aligned_cols=326 Identities=17% Similarity=0.192 Sum_probs=237.2
Q ss_pred hhHHHHHHhhcCCCchHHHHHHHHHHHhCCeEEEEecCCCCccchHHHHHHHHHHhccCC-----CCcEEEEEcccHHHH
Q 002552 269 DSGKAMLSFREKLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRG-----ADCNIICTQPRRISA 343 (908)
Q Consensus 269 ~~~~~~~~~r~~lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~-----~~~~ilv~~P~r~la 343 (908)
+.+.+.+.....--++++|.++|+.+++|+++|+++|||||||+++.+++++.+...... ..+++||++|||+||
T Consensus 96 ~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~aLil~PtreLa 175 (475)
T PRK01297 96 PELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALIIAPTRELV 175 (475)
T ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceEEEEeCcHHHH
Confidence 333444444445567899999999999999999999999999999999999987653211 146899999999999
Q ss_pred HHHHHHHHHHhCCCCCCEEeEEeecc-------ccCCCCCcEEEEchHHHHHHHhcCC-CCCcceEEEEechhccchhhH
Q 002552 344 ISVAARVSSERGENLGETVGYQIRLE-------SKRSAQTRLLFCTTGVLLRQLVEDP-DLSCVSHLLVDEIHERGMNED 415 (908)
Q Consensus 344 ~qi~~rv~~~~~~~~g~~vg~~~~~~-------~~~~~~~~Iiv~T~g~Ll~~l~~~~-~l~~~~~iIiDEaHeR~~~~d 415 (908)
.|+++.+..... ..+..+....... ......++|+|+||++|++++.... .++++++||||||| +.++..
T Consensus 176 ~Q~~~~~~~l~~-~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lViDEah-~l~~~~ 253 (475)
T PRK01297 176 VQIAKDAAALTK-YTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEAD-RMLDMG 253 (475)
T ss_pred HHHHHHHHHhhc-cCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEEechHH-HHHhcc
Confidence 999988866532 2333332211110 1123468999999999999887655 89999999999999 445656
Q ss_pred HHHHHHHHHCc--cCCCCcEEEecccCChHH--H-HhhhCCCCccccCCcccc---ceeeehhhHHHhhhcccCcccccc
Q 002552 416 FLLIILRDLLP--RRPDLRLILMSATINADL--F-SKYFGNAPTVHIPGLTFP---VTDLFLEDVLEKTRYKMNSKLDSF 487 (908)
Q Consensus 416 ~ll~~lk~~~~--~~~~~qiIlmSAT~~~~~--~-~~~f~~~~~i~v~~~~~~---v~~~~l~~~~~~~~~~~~~~~~~~ 487 (908)
|...+.+.+.. ...+.|+|++|||++.+. + ..|+.++..+.+...... +..++.
T Consensus 254 ~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~------------------ 315 (475)
T PRK01297 254 FIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENVASDTVEQHVY------------------ 315 (475)
T ss_pred cHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccCcCCCCcccEEEE------------------
Confidence 65444333322 234679999999996543 3 344433322222111000 000000
Q ss_pred cccccccccccchhhhHhhhhhcccccccccchhhhhHhhHhhhhhhhhchHHHHHHHHHHHhccCCCcEEEecCCHHHH
Q 002552 488 QGNSRRSRRQDSKKDHLTALFEDVDIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICRHEGDGAILVFLTGWNDI 567 (908)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~~~~g~iLVF~~~~~~i 567 (908)
.. .......++..++......++||||++++++
T Consensus 316 ----------------------~~-------------------------~~~~k~~~l~~ll~~~~~~~~IVF~~s~~~~ 348 (475)
T PRK01297 316 ----------------------AV-------------------------AGSDKYKLLYNLVTQNPWERVMVFANRKDEV 348 (475)
T ss_pred ----------------------Ee-------------------------cchhHHHHHHHHHHhcCCCeEEEEeCCHHHH
Confidence 00 0000112334444445567899999999999
Q ss_pred HHHHHHHHhcccCCCCCceEEEeccCCCChHhHHhhhCCCCCCCcEEEEeccccccccCCCCeEEEEeCCCccceeeccc
Q 002552 568 SKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETSYDAL 647 (908)
Q Consensus 568 ~~l~~~L~~~~~~~~~~~~~v~~lH~~l~~~er~~v~~~f~~g~~kIlvaT~iae~GidIp~v~~VId~g~~k~~~yd~~ 647 (908)
+.+++.|.. .++.+..+||++++++|.++++.|++|+++||||||++++|||||+|++||++|+|.
T Consensus 349 ~~l~~~L~~-------~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi~~v~~VI~~~~P~------- 414 (475)
T PRK01297 349 RRIEERLVK-------DGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFTLPE------- 414 (475)
T ss_pred HHHHHHHHH-------cCCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCcccCCCEEEEeCCCC-------
Confidence 999999976 456788899999999999999999999999999999999999999999999999998
Q ss_pred cCccccccccccHhhHHHhccccCCC-CCcEEEEecChhh
Q 002552 648 NKLACLLPSWISKASAHQRRGRAGRV-QPGVCYKLYPRII 686 (908)
Q Consensus 648 ~~~~~l~~~~iS~~~~~QR~GRaGR~-~~G~~~~l~~~~~ 686 (908)
|.++|+||+|||||. ..|.++.|+++++
T Consensus 415 -----------s~~~y~Qr~GRaGR~g~~g~~i~~~~~~d 443 (475)
T PRK01297 415 -----------DPDDYVHRIGRTGRAGASGVSISFAGEDD 443 (475)
T ss_pred -----------CHHHHHHhhCccCCCCCCceEEEEecHHH
Confidence 777999999999999 6799999998763
No 37
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.1e-41 Score=343.74 Aligned_cols=322 Identities=20% Similarity=0.262 Sum_probs=237.4
Q ss_pred cCCCchHHHHHHHHHHHhCCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCC
Q 002552 279 EKLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENL 358 (908)
Q Consensus 279 ~~lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~~~~~~~ 358 (908)
.--.++|+|..+|+.|++|+|+|.+|.||||||++|.++|++.+-.... +--.+|+.|||+||.|+++++.. +|...
T Consensus 26 ~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP~--giFalvlTPTrELA~QiaEQF~a-lGk~l 102 (442)
T KOG0340|consen 26 GIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDPY--GIFALVLTPTRELALQIAEQFIA-LGKLL 102 (442)
T ss_pred cCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCCC--cceEEEecchHHHHHHHHHHHHH-hcccc
Confidence 3345677999999999999999999999999999999999998754332 44678999999999999999854 45555
Q ss_pred CCEEeEEe------eccccCCCCCcEEEEchHHHHHHHhcCC-----CCCcceEEEEechhccchhhHHHHHHHHHHCcc
Q 002552 359 GETVGYQI------RLESKRSAQTRLLFCTTGVLLRQLVEDP-----DLSCVSHLLVDEIHERGMNEDFLLIILRDLLPR 427 (908)
Q Consensus 359 g~~vg~~~------~~~~~~~~~~~Iiv~T~g~Ll~~l~~~~-----~l~~~~~iIiDEaHeR~~~~d~ll~~lk~~~~~ 427 (908)
+..+..-+ ......+...|++++|||+|.+++.++. .++++.++|+|||| |.+..+|-..+--.....
T Consensus 103 ~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDEAD-rvL~~~f~d~L~~i~e~l 181 (442)
T KOG0340|consen 103 NLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDEAD-RVLAGCFPDILEGIEECL 181 (442)
T ss_pred cceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEecchh-hhhccchhhHHhhhhccC
Confidence 55443333 3334456789999999999999998873 58999999999999 888887765554444445
Q ss_pred CCCCcEEEecccCChHHHHhhhCCCCccccCCccccceeeehhhHHHhhhcccCcccccccccccccccccchhhhHhhh
Q 002552 428 RPDLRLILMSATINADLFSKYFGNAPTVHIPGLTFPVTDLFLEDVLEKTRYKMNSKLDSFQGNSRRSRRQDSKKDHLTAL 507 (908)
Q Consensus 428 ~~~~qiIlmSAT~~~~~~~~~f~~~~~i~v~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (908)
.+.+|.+++|||++... .+.|+ +++-. + ..|-++. .++ .+..+.+.+-
T Consensus 182 P~~RQtLlfSATitd~i-~ql~~-~~i~k-~-~a~~~e~--~~~--------------------------vstvetL~q~ 229 (442)
T KOG0340|consen 182 PKPRQTLLFSATITDTI-KQLFG-CPITK-S-IAFELEV--IDG--------------------------VSTVETLYQG 229 (442)
T ss_pred CCccceEEEEeehhhHH-HHhhc-CCccc-c-cceEEec--cCC--------------------------CCchhhhhhh
Confidence 55679999999996443 22232 11100 0 0000000 000 0000000000
Q ss_pred hhcccccccccchhhhhHhhHhhhhhhhhchHHHHHHHHHHHh---ccCCCcEEEecCCHHHHHHHHHHHHhcccCCCCC
Q 002552 508 FEDVDIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICR---HEGDGAILVFLTGWNDISKLLDQIKVNKFLGDPN 584 (908)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~---~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~~~~~ 584 (908)
|... +.+.+...+.++++ +++.+.++||+++..+++.|+..|.. .
T Consensus 230 ---------yI~~----------------~~~vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~-------l 277 (442)
T KOG0340|consen 230 ---------YILV----------------SIDVKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKN-------L 277 (442)
T ss_pred ---------eeec----------------chhhhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhh-------h
Confidence 0000 00111222223322 23678999999999999999999987 6
Q ss_pred ceEEEeccCCCChHhHHhhhCCCCCCCcEEEEeccccccccCCCCeEEEEeCCCccceeeccccCccccccccccHhhHH
Q 002552 585 KFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETSYDALNKLACLLPSWISKASAH 664 (908)
Q Consensus 585 ~~~v~~lH~~l~~~er~~v~~~f~~g~~kIlvaT~iae~GidIp~v~~VId~g~~k~~~yd~~~~~~~l~~~~iS~~~~~ 664 (908)
.+.+..+||.|+|.+|-.++.+|+++..+||||||||+||+|||.|..|||+++|+... +|+
T Consensus 278 e~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDIP~V~LVvN~diPr~P~------------------~yi 339 (442)
T KOG0340|consen 278 EVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGLDIPTVELVVNHDIPRDPK------------------DYI 339 (442)
T ss_pred ceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCCCCCceeEEEecCCCCCHH------------------HHH
Confidence 88999999999999999999999999999999999999999999999999999999555 999
Q ss_pred HhccccCCC-CCcEEEEecChhh
Q 002552 665 QRRGRAGRV-QPGVCYKLYPRII 686 (908)
Q Consensus 665 QR~GRaGR~-~~G~~~~l~~~~~ 686 (908)
||.||+.|+ +.|.++.++++.+
T Consensus 340 HRvGRtARAGR~G~aiSivt~rD 362 (442)
T KOG0340|consen 340 HRVGRTARAGRKGMAISIVTQRD 362 (442)
T ss_pred HhhcchhcccCCcceEEEechhh
Confidence 999999999 7799999999644
No 38
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.5e-41 Score=361.10 Aligned_cols=367 Identities=19% Similarity=0.235 Sum_probs=272.9
Q ss_pred CCCCccccccccCCccccccccCCCCCCCchHHHhHHHHHHHHHHHhccChhHHHHHHhhcCCCchHHHHHHHHHHHhCC
Q 002552 219 NDSGIESSEVARRPKLSVKVANTISPPQSDSAKERLNVILKERQEKLKSSDSGKAMLSFREKLPAFKMKAEFLKAVAENQ 298 (908)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~r~~lpi~~~Q~~~i~~i~~~~ 298 (908)
..+.++.......+.+|.+.|. |+.+++.-.+.+.|.....+ -..-.++++|.++++..+.++
T Consensus 199 ~~d~~~~r~~Lnlrv~g~s~~r----pvtsfeh~gfDkqLm~airk-------------~Ey~kptpiq~qalptalsgr 261 (731)
T KOG0339|consen 199 KMDVIDLRLTLNLRVSGSSPPR----PVTSFEHFGFDKQLMTAIRK-------------SEYEKPTPIQCQALPTALSGR 261 (731)
T ss_pred cccchhhHhhhcceeccCCCCC----CcchhhhcCchHHHHHHHhh-------------hhcccCCcccccccccccccc
Confidence 3344444445555667777666 55555554445555444332 222346779999999999999
Q ss_pred eEEEEecCCCCccchHHHHHHHHHHhcc---CCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCC--EEeEEe----ecc
Q 002552 299 VLVVSGETGCGKTTQLPQFILEEELSSL---RGADCNIICTQPRRISAISVAARVSSERGENLGE--TVGYQI----RLE 369 (908)
Q Consensus 299 ~vii~a~TGSGKTt~~~~~il~~~~~~~---~~~~~~ilv~~P~r~la~qi~~rv~~~~~~~~g~--~vg~~~----~~~ 369 (908)
+++-+|.||||||.+|..+++.+++.+. .+.++..|+++|||+||.||+....++ +...|. ..-|+- .+.
T Consensus 262 dvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vilvPTrela~Qi~~eaKkf-~K~ygl~~v~~ygGgsk~eQ~ 340 (731)
T KOG0339|consen 262 DVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILVPTRELASQIFSEAKKF-GKAYGLRVVAVYGGGSKWEQS 340 (731)
T ss_pred cchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEeccHHHHHHHHHHHHHh-hhhccceEEEeecCCcHHHHH
Confidence 9999999999999999999998887543 356778888899999999999877655 222222 223331 111
Q ss_pred ccCCCCCcEEEEchHHHHHHHhcCC-CCCcceEEEEechhccchhhHHHHHHHHHHCccCCCCcEEEecccCChHH--HH
Q 002552 370 SKRSAQTRLLFCTTGVLLRQLVEDP-DLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILMSATINADL--FS 446 (908)
Q Consensus 370 ~~~~~~~~Iiv~T~g~Ll~~l~~~~-~l~~~~~iIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiIlmSAT~~~~~--~~ 446 (908)
.....++.|+|||||+|++++.-.. +|.++++|||||++ |+.+++|+.++..+....+|+.|+|+||||+...+ ++
T Consensus 341 k~Lk~g~EivVaTPgRlid~VkmKatn~~rvS~LV~DEad-rmfdmGfe~qVrSI~~hirpdrQtllFsaTf~~kIe~la 419 (731)
T KOG0339|consen 341 KELKEGAEIVVATPGRLIDMVKMKATNLSRVSYLVLDEAD-RMFDMGFEPQVRSIKQHIRPDRQTLLFSATFKKKIEKLA 419 (731)
T ss_pred HhhhcCCeEEEechHHHHHHHHhhcccceeeeEEEEechh-hhhccccHHHHHHHHhhcCCcceEEEeeccchHHHHHHH
Confidence 2233689999999999999997655 89999999999999 99999999999888888999999999999997653 44
Q ss_pred hhhCCCCccccCCccccceeeehhhHHHhhhcccCcccccccccccccccccchhhhHhhhhhcccccccccchhhhhHh
Q 002552 447 KYFGNAPTVHIPGLTFPVTDLFLEDVLEKTRYKMNSKLDSFQGNSRRSRRQDSKKDHLTALFEDVDIDSNYKNYRASTRA 526 (908)
Q Consensus 447 ~~f~~~~~i~v~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 526 (908)
+-|...|+-.|.|. |. ...++ +++....+
T Consensus 420 rd~L~dpVrvVqg~---vg----------------ean~d-----------------ITQ~V~V~--------------- 448 (731)
T KOG0339|consen 420 RDILSDPVRVVQGE---VG----------------EANED-----------------ITQTVSVC--------------- 448 (731)
T ss_pred HHHhcCCeeEEEee---hh----------------ccccc-----------------hhheeeec---------------
Confidence 43333333222221 00 00000 00000000
Q ss_pred hHhhhhhhhhchHHHHHHHHHHHhccCCCcEEEecCCHHHHHHHHHHHHhcccCCCCCceEEEeccCCCChHhHHhhhCC
Q 002552 527 SLEAWSAEQIDLGLVESTIEYICRHEGDGAILVFLTGWNDISKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDR 606 (908)
Q Consensus 527 ~~~~~~~~~~~~~li~~~l~~i~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lH~~l~~~er~~v~~~ 606 (908)
..+...+.-++.++......|++|||+.-+.++++++..|.. .++.|..+||++.|.+|.+++..
T Consensus 449 --------~s~~~Kl~wl~~~L~~f~S~gkvlifVTKk~~~e~i~a~Lkl-------k~~~v~llhgdkdqa~rn~~ls~ 513 (731)
T KOG0339|consen 449 --------PSEEKKLNWLLRHLVEFSSEGKVLIFVTKKADAEEIAANLKL-------KGFNVSLLHGDKDQAERNEVLSK 513 (731)
T ss_pred --------cCcHHHHHHHHHHhhhhccCCcEEEEEeccCCHHHHHHHhcc-------ccceeeeecCchhhHHHHHHHHH
Confidence 000112344666666666789999999999999999998876 67889999999999999999999
Q ss_pred CCCCCcEEEEeccccccccCCCCeEEEEeCCCccceeeccccCccccccccccHhhHHHhccccCCC-CCcEEEEecChh
Q 002552 607 PPPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRV-QPGVCYKLYPRI 685 (908)
Q Consensus 607 f~~g~~kIlvaT~iae~GidIp~v~~VId~g~~k~~~yd~~~~~~~l~~~~iS~~~~~QR~GRaGR~-~~G~~~~l~~~~ 685 (908)
|+.+...|+||||++++|+|||++..||+||+.+ +...+.||+||+||. ..|++|.|.|+.
T Consensus 514 fKkk~~~VlvatDvaargldI~~ikTVvnyD~ar------------------dIdththrigrtgRag~kGvayTlvTeK 575 (731)
T KOG0339|consen 514 FKKKRKPVLVATDVAARGLDIPSIKTVVNYDFAR------------------DIDTHTHRIGRTGRAGEKGVAYTLVTEK 575 (731)
T ss_pred HhhcCCceEEEeeHhhcCCCccccceeecccccc------------------hhHHHHHHhhhcccccccceeeEEechh
Confidence 9999999999999999999999999999999999 555999999999999 569999999987
Q ss_pred hHh
Q 002552 686 IHD 688 (908)
Q Consensus 686 ~~~ 688 (908)
+-+
T Consensus 576 Da~ 578 (731)
T KOG0339|consen 576 DAE 578 (731)
T ss_pred hHH
Confidence 543
No 39
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=2.8e-40 Score=377.92 Aligned_cols=334 Identities=15% Similarity=0.184 Sum_probs=239.5
Q ss_pred HHHhccChhHHHHHHhhcCCCchHHHHHHHHHHHhCCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHH
Q 002552 262 QEKLKSSDSGKAMLSFREKLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRI 341 (908)
Q Consensus 262 ~~~~~~~~~~~~~~~~r~~lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~ 341 (908)
+..+...+.+.+.+......-++++|.++|+.++++++++++||||||||+++.+++++.+.. ....+++|+++|+++
T Consensus 30 ~~~l~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~--~~~~~~~lil~Pt~~ 107 (401)
T PTZ00424 30 FDALKLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDY--DLNACQALILAPTRE 107 (401)
T ss_pred HhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcC--CCCCceEEEECCCHH
Confidence 333444444444443344445788999999999999999999999999999999999876532 223568999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCEEeEEeec------cccCCCCCcEEEEchHHHHHHHhcCC-CCCcceEEEEechhccchhh
Q 002552 342 SAISVAARVSSERGENLGETVGYQIRL------ESKRSAQTRLLFCTTGVLLRQLVEDP-DLSCVSHLLVDEIHERGMNE 414 (908)
Q Consensus 342 la~qi~~rv~~~~~~~~g~~vg~~~~~------~~~~~~~~~Iiv~T~g~Ll~~l~~~~-~l~~~~~iIiDEaHeR~~~~ 414 (908)
||.|+.+.+.... ...+..+...... ......+++|+|+||+.|.+.+.... .++++++|||||||+ ..+.
T Consensus 108 L~~Q~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah~-~~~~ 185 (401)
T PTZ00424 108 LAQQIQKVVLALG-DYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEADE-MLSR 185 (401)
T ss_pred HHHHHHHHHHHHh-hhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEecHHH-HHhc
Confidence 9999987765543 2233333222111 11223457999999999999988766 789999999999994 3444
Q ss_pred HHHHHHHHHHCccCCCCcEEEecccCChHH--H-HhhhCCCCccccCCcccc---ceeeehhhHHHhhhcccCccccccc
Q 002552 415 DFLLIILRDLLPRRPDLRLILMSATINADL--F-SKYFGNAPTVHIPGLTFP---VTDLFLEDVLEKTRYKMNSKLDSFQ 488 (908)
Q Consensus 415 d~ll~~lk~~~~~~~~~qiIlmSAT~~~~~--~-~~~f~~~~~i~v~~~~~~---v~~~~l~~~~~~~~~~~~~~~~~~~ 488 (908)
++...+.+.+....++.|+|++|||++.+. + ..|+.++..+.+...... +..+|.
T Consensus 186 ~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------- 246 (401)
T PTZ00424 186 GFKGQIYDVFKKLPPDVQVALFSATMPNEILELTTKFMRDPKRILVKKDELTLEGIRQFYV------------------- 246 (401)
T ss_pred chHHHHHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCCcccCCceEEEE-------------------
Confidence 454444444555667899999999997653 2 233333222211111000 000000
Q ss_pred ccccccccccchhhhHhhhhhcccccccccchhhhhHhhHhhhhhhhhchHHHHHHHHHHHhccCCCcEEEecCCHHHHH
Q 002552 489 GNSRRSRRQDSKKDHLTALFEDVDIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICRHEGDGAILVFLTGWNDIS 568 (908)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~~~~g~iLVF~~~~~~i~ 568 (908)
.... .......+..+.......++||||++++.++
T Consensus 247 ------------------------------~~~~---------------~~~~~~~l~~~~~~~~~~~~ivF~~t~~~~~ 281 (401)
T PTZ00424 247 ------------------------------AVEK---------------EEWKFDTLCDLYETLTITQAIIYCNTRRKVD 281 (401)
T ss_pred ------------------------------ecCh---------------HHHHHHHHHHHHHhcCCCeEEEEecCcHHHH
Confidence 0000 0001122333333345568999999999999
Q ss_pred HHHHHHHhcccCCCCCceEEEeccCCCChHhHHhhhCCCCCCCcEEEEeccccccccCCCCeEEEEeCCCccceeecccc
Q 002552 569 KLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETSYDALN 648 (908)
Q Consensus 569 ~l~~~L~~~~~~~~~~~~~v~~lH~~l~~~er~~v~~~f~~g~~kIlvaT~iae~GidIp~v~~VId~g~~k~~~yd~~~ 648 (908)
.+++.|.. .++.+..+||+|++++|+.+++.|++|+++|||||+++++|||+|+|++||++++|.
T Consensus 282 ~l~~~l~~-------~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~VI~~~~p~-------- 346 (401)
T PTZ00424 282 YLTKKMHE-------RDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLVINYDLPA-------- 346 (401)
T ss_pred HHHHHHHH-------CCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCEEEEECCCC--------
Confidence 99999986 467799999999999999999999999999999999999999999999999999987
Q ss_pred CccccccccccHhhHHHhccccCCC-CCcEEEEecChhhHh
Q 002552 649 KLACLLPSWISKASAHQRRGRAGRV-QPGVCYKLYPRIIHD 688 (908)
Q Consensus 649 ~~~~l~~~~iS~~~~~QR~GRaGR~-~~G~~~~l~~~~~~~ 688 (908)
|..+|+||+|||||. ..|.||.|+++++.+
T Consensus 347 ----------s~~~y~qr~GRagR~g~~G~~i~l~~~~~~~ 377 (401)
T PTZ00424 347 ----------SPENYIHRIGRSGRFGRKGVAINFVTPDDIE 377 (401)
T ss_pred ----------CHHHEeecccccccCCCCceEEEEEcHHHHH
Confidence 777999999999999 689999999987654
No 40
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.8e-39 Score=347.92 Aligned_cols=373 Identities=17% Similarity=0.181 Sum_probs=250.4
Q ss_pred CCchHHHHHHHHHHHhCCeEEEEecCCCCccchHHHHHHHHHHhcc----CCCCcEEEEEcccHHHHHHHHHHHHHHhCC
Q 002552 281 LPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSL----RGADCNIICTQPRRISAISVAARVSSERGE 356 (908)
Q Consensus 281 lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~~~~il~~~~~~~----~~~~~~ilv~~P~r~la~qi~~rv~~~~~~ 356 (908)
-.++.+|.+.||.+++++|++|.++||||||+++.+||.+.+.... +..++.+||++||||||.|+++.+.+....
T Consensus 158 ~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~ALVivPTREL~~Q~y~~~qKLl~~ 237 (708)
T KOG0348|consen 158 SAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPYALVIVPTRELALQIYETVQKLLKP 237 (708)
T ss_pred CccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCceEEEEechHHHHHHHHHHHHHHhcC
Confidence 3567899999999999999999999999999999999999886532 234668899999999999999999888766
Q ss_pred CCCCEEeEEeeccccCC------CCCcEEEEchHHHHHHHhcCC--CCCcceEEEEechhccchhhHHHHHH---HHHHC
Q 002552 357 NLGETVGYQIRLESKRS------AQTRLLFCTTGVLLRQLVEDP--DLSCVSHLLVDEIHERGMNEDFLLII---LRDLL 425 (908)
Q Consensus 357 ~~g~~vg~~~~~~~~~~------~~~~Iiv~T~g~Ll~~l~~~~--~l~~~~~iIiDEaHeR~~~~d~ll~~---lk~~~ 425 (908)
.....-|+-+..+.+.+ .+++|+|+|||+|+++|.+-. .++++.+||+||+| |-++.+|...+ ++.+-
T Consensus 238 ~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRwlVlDEaD-rlleLGfekdit~Il~~v~ 316 (708)
T KOG0348|consen 238 FHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRWLVLDEAD-RLLELGFEKDITQILKAVH 316 (708)
T ss_pred ceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeEEEecchh-HHHhccchhhHHHHHHHHh
Confidence 54444566666666554 488999999999999998866 67899999999999 76777765443 33331
Q ss_pred ----c------cCCCCcEEEecccCChH--HHHhhhCCCC-ccccCCccccceeeehhhHHHhhhcccCccccccccccc
Q 002552 426 ----P------RRPDLRLILMSATINAD--LFSKYFGNAP-TVHIPGLTFPVTDLFLEDVLEKTRYKMNSKLDSFQGNSR 492 (908)
Q Consensus 426 ----~------~~~~~qiIlmSAT~~~~--~~~~~f~~~~-~i~v~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 492 (908)
. ..+.+|-+++|||+... .+++.--..| .|... ..+.-.. --.+.+..+... ..-+.+.
T Consensus 317 ~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld-~s~~~~~-p~~~a~~ev~~~--~~~~~l~---- 388 (708)
T KOG0348|consen 317 SIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLD-KSHSQLN-PKDKAVQEVDDG--PAGDKLD---- 388 (708)
T ss_pred hccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeecc-chhhhcC-cchhhhhhcCCc--ccccccc----
Confidence 1 12247889999999544 3443222222 11100 0000000 000000000000 0000000
Q ss_pred ccccccchhhhHhhhhhcccccccccchhhhhHhhHhhhhhhhhchHHHHHHHHHHHhccCCCcEEEecCCHHHHHHHHH
Q 002552 493 RSRRQDSKKDHLTALFEDVDIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICRHEGDGAILVFLTGWNDISKLLD 572 (908)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~~~~g~iLVF~~~~~~i~~l~~ 572 (908)
.....+.+.+ .|.-+. .....--+..++...++.....++|||+.+.+.++.-++
T Consensus 389 ----~~~iPeqL~q---------ry~vVP------------pKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~ 443 (708)
T KOG0348|consen 389 ----SFAIPEQLLQ---------RYTVVP------------PKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYS 443 (708)
T ss_pred ----cccCcHHhhh---------ceEecC------------CchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHH
Confidence 0000000000 000000 011112245566666766777799999999999998888
Q ss_pred HHHhcccC---------------CCCCceEEEeccCCCChHhHHhhhCCCCCCCcEEEEeccccccccCCCCeEEEEeCC
Q 002552 573 QIKVNKFL---------------GDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDCG 637 (908)
Q Consensus 573 ~L~~~~~~---------------~~~~~~~v~~lH~~l~~~er~~v~~~f~~g~~kIlvaT~iae~GidIp~v~~VId~g 637 (908)
++.+.... .-..+.+++-|||+|.|++|..+|+.|+.....||+|||||+||||+|+|++||.|+
T Consensus 444 lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQYd 523 (708)
T KOG0348|consen 444 LFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQYD 523 (708)
T ss_pred HHHhhhhcccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEEeC
Confidence 87653211 112356799999999999999999999999999999999999999999999999999
Q ss_pred CccceeeccccCccccccccccHhhHHHhccccCCC-CCcEEEEecCh--hhHhhcCCCCCCccccCchHH
Q 002552 638 KAKETSYDALNKLACLLPSWISKASAHQRRGRAGRV-QPGVCYKLYPR--IIHDAMLPYQLPEILRTPLQE 705 (908)
Q Consensus 638 ~~k~~~yd~~~~~~~l~~~~iS~~~~~QR~GRaGR~-~~G~~~~l~~~--~~~~~l~~~~~pei~r~~L~~ 705 (908)
.|. |.++|+||+|||.|. ..|.++.|..+ .+|-.......+-++.-++..
T Consensus 524 ~P~------------------s~adylHRvGRTARaG~kG~alLfL~P~Eaey~~~l~~~~~~l~q~~~~~ 576 (708)
T KOG0348|consen 524 PPF------------------STADYLHRVGRTARAGEKGEALLFLLPSEAEYVNYLKKHHIMLLQFDMEI 576 (708)
T ss_pred CCC------------------CHHHHHHHhhhhhhccCCCceEEEecccHHHHHHHHHhhcchhhccchhh
Confidence 998 888999999999999 67888777654 345433332233233344433
No 41
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.3e-40 Score=332.19 Aligned_cols=311 Identities=19% Similarity=0.214 Sum_probs=243.5
Q ss_pred CchHHHHHHHHHHHhCCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCCE
Q 002552 282 PAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLGET 361 (908)
Q Consensus 282 pi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~~~~~~~g~~ 361 (908)
.+.|+|++.|+.++.|+++++-|..|+|||.++..|+++.+-.. ...-..+|++|||+||.|+.+ ++++++...|..
T Consensus 107 kPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~--~~~IQ~~ilVPtrelALQtSq-vc~~lskh~~i~ 183 (459)
T KOG0326|consen 107 KPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPK--KNVIQAIILVPTRELALQTSQ-VCKELSKHLGIK 183 (459)
T ss_pred CCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCcc--ccceeEEEEeecchhhHHHHH-HHHHHhcccCeE
Confidence 45679999999999999999999999999999999999987432 234467788899999999965 456666666655
Q ss_pred EeEE-----eeccc-cCCCCCcEEEEchHHHHHHHhcCC-CCCcceEEEEechhccchhhHHHHHHHHHHCccCCCCcEE
Q 002552 362 VGYQ-----IRLES-KRSAQTRLLFCTTGVLLRQLVEDP-DLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLI 434 (908)
Q Consensus 362 vg~~-----~~~~~-~~~~~~~Iiv~T~g~Ll~~l~~~~-~l~~~~~iIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiI 434 (908)
|-.. .+.+- +.+...+++|+|||+++++...+- .++++..+|+|||| ..+..||-..+-+.+.-..++.|++
T Consensus 184 vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEAD-KlLs~~F~~~~e~li~~lP~~rQil 262 (459)
T KOG0326|consen 184 VMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEAD-KLLSVDFQPIVEKLISFLPKERQIL 262 (459)
T ss_pred EEEecCCcccccceeeecCceEEEEcCChhHHHHHhcccccchhceEEEechhh-hhhchhhhhHHHHHHHhCCccceee
Confidence 4322 22221 235678999999999999998877 89999999999999 6688999888888887788899999
Q ss_pred EecccCChHH--H-HhhhCCCCccccCCcc--ccceeeehhhHHHhhhcccCcccccccccccccccccchhhhHhhhhh
Q 002552 435 LMSATINADL--F-SKYFGNAPTVHIPGLT--FPVTDLFLEDVLEKTRYKMNSKLDSFQGNSRRSRRQDSKKDHLTALFE 509 (908)
Q Consensus 435 lmSAT~~~~~--~-~~~f~~~~~i~v~~~~--~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (908)
++|||++... | .+|+.++-.+..-... ..|..+|.-
T Consensus 263 lySATFP~tVk~Fm~~~l~kPy~INLM~eLtl~GvtQyYaf--------------------------------------- 303 (459)
T KOG0326|consen 263 LYSATFPLTVKGFMDRHLKKPYEINLMEELTLKGVTQYYAF--------------------------------------- 303 (459)
T ss_pred EEecccchhHHHHHHHhccCcceeehhhhhhhcchhhheee---------------------------------------
Confidence 9999997543 3 3455444333221111 011111100
Q ss_pred cccccccccchhhhhHhhHhhhhhhhhchHHHHHHHHHHHhccCCCcEEEecCCHHHHHHHHHHHHhcccCCCCCceEEE
Q 002552 510 DVDIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICRHEGDGAILVFLTGWNDISKLLDQIKVNKFLGDPNKFLVL 589 (908)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~v~ 589 (908)
+........+..++....-.+.||||++.+.++-++..+.+ .++.++
T Consensus 304 --------------------------V~e~qKvhCLntLfskLqINQsIIFCNS~~rVELLAkKITe-------lGyscy 350 (459)
T KOG0326|consen 304 --------------------------VEERQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITE-------LGYSCY 350 (459)
T ss_pred --------------------------echhhhhhhHHHHHHHhcccceEEEeccchHhHHHHHHHHh-------ccchhh
Confidence 00001223444444444456789999999999999999988 678899
Q ss_pred eccCCCChHhHHhhhCCCCCCCcEEEEeccccccccCCCCeEEEEeCCCccceeeccccCccccccccccHhhHHHhccc
Q 002552 590 PLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETSYDALNKLACLLPSWISKASAHQRRGR 669 (908)
Q Consensus 590 ~lH~~l~~~er~~v~~~f~~g~~kIlvaT~iae~GidIp~v~~VId~g~~k~~~yd~~~~~~~l~~~~iS~~~~~QR~GR 669 (908)
++|+.|-+++|..||..|++|.++.|||||.+-|||||++|++|||+|+|| +.++|.||+||
T Consensus 351 yiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvVINFDfpk------------------~aEtYLHRIGR 412 (459)
T KOG0326|consen 351 YIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVVINFDFPK------------------NAETYLHRIGR 412 (459)
T ss_pred HHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEEEecCCCC------------------CHHHHHHHccC
Confidence 999999999999999999999999999999999999999999999999999 55599999999
Q ss_pred cCCC-CCcEEEEecChhh
Q 002552 670 AGRV-QPGVCYKLYPRII 686 (908)
Q Consensus 670 aGR~-~~G~~~~l~~~~~ 686 (908)
+||. ..|.++.|.+-++
T Consensus 413 sGRFGhlGlAInLityed 430 (459)
T KOG0326|consen 413 SGRFGHLGLAINLITYED 430 (459)
T ss_pred CccCCCcceEEEEEehhh
Confidence 9999 7799999998654
No 42
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=1.5e-38 Score=382.65 Aligned_cols=338 Identities=18% Similarity=0.133 Sum_probs=228.5
Q ss_pred HHHHhhcCCCchHHHHHHHHHHHhCCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHH
Q 002552 273 AMLSFREKLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSS 352 (908)
Q Consensus 273 ~~~~~r~~lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~ 352 (908)
+.++......+|++|.++|+.+++|+++++++|||||||.++.+++++.+... ..+++||+.|||+||.|+.+++.+
T Consensus 27 ~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~---~~~~aL~l~PtraLa~q~~~~l~~ 103 (742)
T TIGR03817 27 AALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADD---PRATALYLAPTKALAADQLRAVRE 103 (742)
T ss_pred HHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhC---CCcEEEEEcChHHHHHHHHHHHHH
Confidence 34444445568899999999999999999999999999999999999987642 356899999999999999999876
Q ss_pred HhCCCCCCEEeEEeec---c--ccCCCCCcEEEEchHHHHHHHhcC-C----CCCcceEEEEechhcc-c---hhhHHHH
Q 002552 353 ERGENLGETVGYQIRL---E--SKRSAQTRLLFCTTGVLLRQLVED-P----DLSCVSHLLVDEIHER-G---MNEDFLL 418 (908)
Q Consensus 353 ~~~~~~g~~vg~~~~~---~--~~~~~~~~Iiv~T~g~Ll~~l~~~-~----~l~~~~~iIiDEaHeR-~---~~~d~ll 418 (908)
.. ..+..++..... + .....+++|+++||++|...+... . .++++++|||||||.. + .....++
T Consensus 104 l~--~~~i~v~~~~Gdt~~~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g~fg~~~~~il 181 (742)
T TIGR03817 104 LT--LRGVRPATYDGDTPTEERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRGVFGSHVALVL 181 (742)
T ss_pred hc--cCCeEEEEEeCCCCHHHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccCccHHHHHHHH
Confidence 53 223233221111 0 112346899999999997644322 1 4889999999999952 1 1122223
Q ss_pred HHHHHHCc-cCCCCcEEEecccCC-hHHHHhhhCCCCccccCCccccc---eeeehhhHHHhhhcccCcccccccccccc
Q 002552 419 IILRDLLP-RRPDLRLILMSATIN-ADLFSKYFGNAPTVHIPGLTFPV---TDLFLEDVLEKTRYKMNSKLDSFQGNSRR 493 (908)
Q Consensus 419 ~~lk~~~~-~~~~~qiIlmSAT~~-~~~~~~~f~~~~~i~v~~~~~~v---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 493 (908)
..++.+.. ...++|+|++|||++ +..+.+++.+.++..+.....|. ...+...... .....
T Consensus 182 ~rL~ri~~~~g~~~q~i~~SATi~n~~~~~~~l~g~~~~~i~~~~~~~~~~~~~~~~p~~~-----------~~~~~--- 247 (742)
T TIGR03817 182 RRLRRLCARYGASPVFVLASATTADPAAAASRLIGAPVVAVTEDGSPRGARTVALWEPPLT-----------ELTGE--- 247 (742)
T ss_pred HHHHHHHHhcCCCCEEEEEecCCCCHHHHHHHHcCCCeEEECCCCCCcCceEEEEecCCcc-----------ccccc---
Confidence 33333332 234689999999994 44445444444433332221111 1111100000 00000
Q ss_pred cccccchhhhHhhhhhcccccccccchhhhhHhhHhhhhhhhhchHHHHHHHHHHHhccCCCcEEEecCCHHHHHHHHHH
Q 002552 494 SRRQDSKKDHLTALFEDVDIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICRHEGDGAILVFLTGWNDISKLLDQ 573 (908)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~~~~g~iLVF~~~~~~i~~l~~~ 573 (908)
.... .+ .........++..+.. .+.++||||++++.++.++..
T Consensus 248 ------~~~~--------------------~r---------~~~~~~~~~~l~~l~~--~~~~~IVF~~sr~~ae~l~~~ 290 (742)
T TIGR03817 248 ------NGAP--------------------VR---------RSASAEAADLLADLVA--EGARTLTFVRSRRGAELVAAI 290 (742)
T ss_pred ------cccc--------------------cc---------cchHHHHHHHHHHHHH--CCCCEEEEcCCHHHHHHHHHH
Confidence 0000 00 0000012233444433 256899999999999999998
Q ss_pred HHhccc-CCCCCceEEEeccCCCChHhHHhhhCCCCCCCcEEEEeccccccccCCCCeEEEEeCCCccceeeccccCccc
Q 002552 574 IKVNKF-LGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETSYDALNKLAC 652 (908)
Q Consensus 574 L~~~~~-~~~~~~~~v~~lH~~l~~~er~~v~~~f~~g~~kIlvaT~iae~GidIp~v~~VId~g~~k~~~yd~~~~~~~ 652 (908)
|..... ........+..+||++++++|+++++.|++|++++|||||++|+|||||+|++||++|+|.
T Consensus 291 l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~~G~i~vLVaTd~lerGIDI~~vd~VI~~~~P~------------ 358 (742)
T TIGR03817 291 ARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALRDGELLGVATTNALELGVDISGLDAVVIAGFPG------------ 358 (742)
T ss_pred HHHHHHhhccccccchhheecCCCHHHHHHHHHHHHcCCceEEEECchHhccCCcccccEEEEeCCCC------------
Confidence 875210 0011245788999999999999999999999999999999999999999999999999998
Q ss_pred cccccccHhhHHHhccccCCC-CCcEEEEecCh
Q 002552 653 LLPSWISKASAHQRRGRAGRV-QPGVCYKLYPR 684 (908)
Q Consensus 653 l~~~~iS~~~~~QR~GRaGR~-~~G~~~~l~~~ 684 (908)
|.++|+||+|||||. +.|.++.+.+.
T Consensus 359 ------s~~~y~qRiGRaGR~G~~g~ai~v~~~ 385 (742)
T TIGR03817 359 ------TRASLWQQAGRAGRRGQGALVVLVARD 385 (742)
T ss_pred ------CHHHHHHhccccCCCCCCcEEEEEeCC
Confidence 677999999999999 67999998863
No 43
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=2.4e-40 Score=341.29 Aligned_cols=348 Identities=18% Similarity=0.219 Sum_probs=249.3
Q ss_pred cccccccCCCCCCCchHHHhHHHHHHHHHHHhccChhHHHHHHhhcCCCchHHHHHHHHHHHhCCeEEEEecCCCCccch
Q 002552 234 LSVKVANTISPPQSDSAKERLNVILKERQEKLKSSDSGKAMLSFREKLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQ 313 (908)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~r~~lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~ 313 (908)
.|.++| ||+.++.+.+++..+.+.+ +...-.-++++|-+.+|.+++|++.|..|-||||||+.
T Consensus 161 eGd~ip----PPIksF~eMKFP~~~L~~l-------------k~KGI~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlv 223 (610)
T KOG0341|consen 161 EGDDIP----PPIKSFKEMKFPKPLLRGL-------------KKKGIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLV 223 (610)
T ss_pred eCCCCC----CchhhhhhccCCHHHHHHH-------------HhcCCCCCCceeecCcceEeecCceeeEEeecCCceEE
Confidence 455554 4777776666665555433 33445567889999999999999999999999999988
Q ss_pred HHHHHHHHHHhc------cCCCCcEEEEEcccHHHHHHHHHHHHHHhC---C---C---CCCEE-eEEeec-cccCCCCC
Q 002552 314 LPQFILEEELSS------LRGADCNIICTQPRRISAISVAARVSSERG---E---N---LGETV-GYQIRL-ESKRSAQT 376 (908)
Q Consensus 314 ~~~~il~~~~~~------~~~~~~~ilv~~P~r~la~qi~~rv~~~~~---~---~---~g~~v-g~~~~~-~~~~~~~~ 376 (908)
|.++++-..+.+ .++.++.-|+++|.|+||.|++.-+.+... . + .+..+ |..++. ......+.
T Consensus 224 FvLP~imf~LeqE~~lPf~~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~Gv 303 (610)
T KOG0341|consen 224 FVLPVIMFALEQEMMLPFARGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRGV 303 (610)
T ss_pred EeHHHHHHHHHHHhcCccccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcCe
Confidence 777665443322 123445566666999999999876544321 1 1 01111 111221 12345689
Q ss_pred cEEEEchHHHHHHHhcCC-CCCcceEEEEechhccchhhHHHHHHHHHHCccCCCCcEEEecccCChHH--HHhhhCCCC
Q 002552 377 RLLFCTTGVLLRQLVEDP-DLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILMSATINADL--FSKYFGNAP 453 (908)
Q Consensus 377 ~Iiv~T~g~Ll~~l~~~~-~l~~~~~iIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiIlmSAT~~~~~--~~~~f~~~~ 453 (908)
+|+|+|||+|.++|.... .|+-+.++.+|||| |+++++|...+...+.-....+|+++||||++..+ |++----.|
T Consensus 304 HivVATPGRL~DmL~KK~~sLd~CRyL~lDEAD-RmiDmGFEddir~iF~~FK~QRQTLLFSATMP~KIQ~FAkSALVKP 382 (610)
T KOG0341|consen 304 HIVVATPGRLMDMLAKKIMSLDACRYLTLDEAD-RMIDMGFEDDIRTIFSFFKGQRQTLLFSATMPKKIQNFAKSALVKP 382 (610)
T ss_pred eEEEcCcchHHHHHHHhhccHHHHHHhhhhhHH-HHhhccchhhHHHHHHHHhhhhheeeeeccccHHHHHHHHhhcccc
Confidence 999999999999998776 89999999999999 99999998887666655566789999999998764 332111112
Q ss_pred -ccccCCccccceeeehhhHHHhhhcccCcccccccccccccccccchhhhHhhhhhcccccccccchhhhhHhhHhhhh
Q 002552 454 -TVHIPGLTFPVTDLFLEDVLEKTRYKMNSKLDSFQGNSRRSRRQDSKKDHLTALFEDVDIDSNYKNYRASTRASLEAWS 532 (908)
Q Consensus 454 -~i~v~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 (908)
.++| ||.-... + +++....|..
T Consensus 383 vtvNV-GRAGAAs---l-dViQevEyVk---------------------------------------------------- 405 (610)
T KOG0341|consen 383 VTVNV-GRAGAAS---L-DVIQEVEYVK---------------------------------------------------- 405 (610)
T ss_pred eEEec-ccccccc---h-hHHHHHHHHH----------------------------------------------------
Confidence 1222 1110000 0 0000000000
Q ss_pred hhhhchHHHHHHHHHHHhccCCCcEEEecCCHHHHHHHHHHHHhcccCCCCCceEEEeccCCCChHhHHhhhCCCCCCCc
Q 002552 533 AEQIDLGLVESTIEYICRHEGDGAILVFLTGWNDISKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKR 612 (908)
Q Consensus 533 ~~~~~~~li~~~l~~i~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lH~~l~~~er~~v~~~f~~g~~ 612 (908)
....+.-++..+. ....++|||+..+.+++.+.++|.- .+..++.+||+..|++|..+++.|+.|+.
T Consensus 406 ----qEaKiVylLeCLQ--KT~PpVLIFaEkK~DVD~IhEYLLl-------KGVEavaIHGGKDQedR~~ai~afr~gkK 472 (610)
T KOG0341|consen 406 ----QEAKIVYLLECLQ--KTSPPVLIFAEKKADVDDIHEYLLL-------KGVEAVAIHGGKDQEDRHYAIEAFRAGKK 472 (610)
T ss_pred ----hhhhhhhHHHHhc--cCCCceEEEeccccChHHHHHHHHH-------ccceeEEeecCcchhHHHHHHHHHhcCCC
Confidence 0011333444443 3456799999999999999999876 57889999999999999999999999999
Q ss_pred EEEEeccccccccCCCCeEEEEeCCCccceeeccccCccccccccccHhhHHHhccccCCC-CCcEEEEecChhhH
Q 002552 613 KIVLATNIAESSITIDDVVYVVDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRV-QPGVCYKLYPRIIH 687 (908)
Q Consensus 613 kIlvaT~iae~GidIp~v~~VId~g~~k~~~yd~~~~~~~l~~~~iS~~~~~QR~GRaGR~-~~G~~~~l~~~~~~ 687 (908)
.||||||||..|+|+|+|.+|||||+|.+.. +|+||+||+||. ..|.+..|+.+...
T Consensus 473 DVLVATDVASKGLDFp~iqHVINyDMP~eIE------------------NYVHRIGRTGRsg~~GiATTfINK~~~ 530 (610)
T KOG0341|consen 473 DVLVATDVASKGLDFPDIQHVINYDMPEEIE------------------NYVHRIGRTGRSGKTGIATTFINKNQE 530 (610)
T ss_pred ceEEEecchhccCCCccchhhccCCChHHHH------------------HHHHHhcccCCCCCcceeeeeecccch
Confidence 9999999999999999999999999999555 999999999999 77999999987543
No 44
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.6e-38 Score=340.00 Aligned_cols=361 Identities=19% Similarity=0.197 Sum_probs=246.5
Q ss_pred HHHHhccChhHHHHHHhhcCCCchHHHHHHHHHHHhC-CeEEEEecCCCCccchHHHHHHHHHHh---------cc--CC
Q 002552 261 RQEKLKSSDSGKAMLSFREKLPAFKMKAEFLKAVAEN-QVLVVSGETGCGKTTQLPQFILEEELS---------SL--RG 328 (908)
Q Consensus 261 ~~~~~~~~~~~~~~~~~r~~lpi~~~Q~~~i~~i~~~-~~vii~a~TGSGKTt~~~~~il~~~~~---------~~--~~ 328 (908)
.|..+......-..+.+.....++++|...|+++..+ .|++..|+||||||++|-+||++.+.. +. +.
T Consensus 182 AW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~~k~ 261 (731)
T KOG0347|consen 182 AWKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTSAKY 261 (731)
T ss_pred HHhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhHHhcc
Confidence 4666666677777778888888999999999999888 799999999999999999999984332 21 22
Q ss_pred CCcEEEEEcccHHHHHHHHHHHHHHhCCCCCCEE----eE-E-eeccccCCCCCcEEEEchHHHHHHHhcCC----CCCc
Q 002552 329 ADCNIICTQPRRISAISVAARVSSERGENLGETV----GY-Q-IRLESKRSAQTRLLFCTTGVLLRQLVEDP----DLSC 398 (908)
Q Consensus 329 ~~~~ilv~~P~r~la~qi~~rv~~~~~~~~g~~v----g~-~-~~~~~~~~~~~~Iiv~T~g~Ll~~l~~~~----~l~~ 398 (908)
..+..||+.|||+||.||.+.+..... ..+..+ |- . ..+++..+..++|+|+|||+|..++..+. .+++
T Consensus 262 ~k~~~LV~tPTRELa~QV~~Hl~ai~~-~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l~~~k~ 340 (731)
T KOG0347|consen 262 VKPIALVVTPTRELAHQVKQHLKAIAE-KTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHLGNFKK 340 (731)
T ss_pred CcceeEEecChHHHHHHHHHHHHHhcc-ccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhhhhhhh
Confidence 334589999999999999988755432 223322 21 1 22333445588999999999999998765 6889
Q ss_pred ceEEEEechhccchhhHHHHH---HHHHHC--ccCCCCcEEEecccCChHHHHhhhCCCCccccCCccccceeeehhhHH
Q 002552 399 VSHLLVDEIHERGMNEDFLLI---ILRDLL--PRRPDLRLILMSATINADLFSKYFGNAPTVHIPGLTFPVTDLFLEDVL 473 (908)
Q Consensus 399 ~~~iIiDEaHeR~~~~d~ll~---~lk~~~--~~~~~~qiIlmSAT~~~~~~~~~f~~~~~i~v~~~~~~v~~~~l~~~~ 473 (908)
+.||||||+| |++.-+.+.. +|+.+. +.++.+|++++|||+.-..+...-.... ..++...+ ..-++.++
T Consensus 341 vkcLVlDEaD-RmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k---~~~k~~~~-~~kiq~Lm 415 (731)
T KOG0347|consen 341 VKCLVLDEAD-RMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRK---KKDKEDEL-NAKIQHLM 415 (731)
T ss_pred ceEEEEccHH-HHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhh---ccchhhhh-hHHHHHHH
Confidence 9999999999 8887665544 344444 3456789999999986443221100000 00000000 00112223
Q ss_pred HhhhcccCcccccccccccccccccchhhhHhh-hhhcccccccccchhhhhHhhHhhhhhhhhchHHHHHHHHHHHhcc
Q 002552 474 EKTRYKMNSKLDSFQGNSRRSRRQDSKKDHLTA-LFEDVDIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICRHE 552 (908)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~~ 552 (908)
....+.-....-+... +......+.+ .+++ .+. ..|+ -+.+++ ..
T Consensus 416 k~ig~~~kpkiiD~t~-------q~~ta~~l~Es~I~C-~~~--------------------eKD~-----ylyYfl-~r 461 (731)
T KOG0347|consen 416 KKIGFRGKPKIIDLTP-------QSATASTLTESLIEC-PPL--------------------EKDL-----YLYYFL-TR 461 (731)
T ss_pred HHhCccCCCeeEecCc-------chhHHHHHHHHhhcC-Ccc--------------------ccce-----eEEEEE-ee
Confidence 3333222210000000 0000000110 0110 000 0000 001111 23
Q ss_pred CCCcEEEecCCHHHHHHHHHHHHhcccCCCCCceEEEeccCCCChHhHHhhhCCCCCCCcEEEEeccccccccCCCCeEE
Q 002552 553 GDGAILVFLTGWNDISKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVY 632 (908)
Q Consensus 553 ~~g~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lH~~l~~~er~~v~~~f~~g~~kIlvaT~iae~GidIp~v~~ 632 (908)
-+|++||||++.+.+..|+-.|.. .++..++||+.|.|.+|.+-++.|+...-.||||||||+||||||+|.+
T Consensus 462 yPGrTlVF~NsId~vKRLt~~L~~-------L~i~p~~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~H 534 (731)
T KOG0347|consen 462 YPGRTLVFCNSIDCVKRLTVLLNN-------LDIPPLPLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQH 534 (731)
T ss_pred cCCceEEEechHHHHHHHHHHHhh-------cCCCCchhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcce
Confidence 479999999999999999999987 5677788999999999999999999999999999999999999999999
Q ss_pred EEeCCCccceeeccccCccccccccccHhhHHHhccccCCC-CCcEEEEecChhh
Q 002552 633 VVDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRV-QPGVCYKLYPRII 686 (908)
Q Consensus 633 VId~g~~k~~~yd~~~~~~~l~~~~iS~~~~~QR~GRaGR~-~~G~~~~l~~~~~ 686 (908)
||+|-.|+... .|+||.|||.|+ ..|..+.|+.+..
T Consensus 535 VIHYqVPrtse------------------iYVHRSGRTARA~~~Gvsvml~~P~e 571 (731)
T KOG0347|consen 535 VIHYQVPRTSE------------------IYVHRSGRTARANSEGVSVMLCGPQE 571 (731)
T ss_pred EEEeecCCccc------------------eeEecccccccccCCCeEEEEeChHH
Confidence 99999999544 899999999999 7899999998643
No 45
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=6.3e-37 Score=330.60 Aligned_cols=433 Identities=21% Similarity=0.247 Sum_probs=311.1
Q ss_pred hccChhHHHHHHhhcCCCchHHHHHHHHH-HHhCCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHH
Q 002552 265 LKSSDSGKAMLSFREKLPAFKMKAEFLKA-VAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISA 343 (908)
Q Consensus 265 ~~~~~~~~~~~~~r~~lpi~~~Q~~~i~~-i~~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la 343 (908)
+..-+.++++++.+..--+.|.|.-++++ +++|+|++|+++|+||||+..-+.=+..++. .+.+.|+++|..+||
T Consensus 199 Ldipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~----~g~KmlfLvPLVALA 274 (830)
T COG1202 199 LDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLS----GGKKMLFLVPLVALA 274 (830)
T ss_pred cCCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHh----CCCeEEEEehhHHhh
Confidence 34445667788888777777889989888 7899999999999999998777766666553 245899999999999
Q ss_pred HHHHHHHHHHhCCCCCCEEeEEeec-----c-----ccCCCCCcEEEEchHHHHHHHhcCCCCCcceEEEEechh-----
Q 002552 344 ISVAARVSSERGENLGETVGYQIRL-----E-----SKRSAQTRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIH----- 408 (908)
Q Consensus 344 ~qi~~rv~~~~~~~~g~~vg~~~~~-----~-----~~~~~~~~Iiv~T~g~Ll~~l~~~~~l~~~~~iIiDEaH----- 408 (908)
+|.++.+...+ .++|..+...+.. . -..+.+.+|+|.|.+-+.-+|+.+..+.+++.|||||+|
T Consensus 275 NQKy~dF~~rY-s~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg~~lgdiGtVVIDEiHtL~de 353 (830)
T COG1202 275 NQKYEDFKERY-SKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTGKDLGDIGTVVIDEIHTLEDE 353 (830)
T ss_pred cchHHHHHHHh-hcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcCCcccccceEEeeeeeeccch
Confidence 99999997765 5666665444321 1 123457899999999999889888899999999999999
Q ss_pred ccchhhHHHHHHHHHHCccCCCCcEEEecccC-ChHHHHhhhCCCCccccCCccccceeeehhhHHHhhhcccCcccccc
Q 002552 409 ERGMNEDFLLIILRDLLPRRPDLRLILMSATI-NADLFSKYFGNAPTVHIPGLTFPVTDLFLEDVLEKTRYKMNSKLDSF 487 (908)
Q Consensus 409 eR~~~~d~ll~~lk~~~~~~~~~qiIlmSAT~-~~~~~~~~f~~~~~i~v~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~ 487 (908)
||+...|=+...+|. ..|+.|+|.+|||+ |++.++++|+.. .+....|+.|++.|.+-.
T Consensus 354 ERG~RLdGLI~RLr~---l~~~AQ~i~LSATVgNp~elA~~l~a~-lV~y~~RPVplErHlvf~---------------- 413 (830)
T COG1202 354 ERGPRLDGLIGRLRY---LFPGAQFIYLSATVGNPEELAKKLGAK-LVLYDERPVPLERHLVFA---------------- 413 (830)
T ss_pred hcccchhhHHHHHHH---hCCCCeEEEEEeecCChHHHHHHhCCe-eEeecCCCCChhHeeeee----------------
Confidence 578777766666665 46689999999999 888999999654 445567777776654311
Q ss_pred cccccccccccchhhhHhhhhhcccccccccchhhhhHhhHhhhhhhhhchHHHHHHHHH----HHhccCCCcEEEecCC
Q 002552 488 QGNSRRSRRQDSKKDHLTALFEDVDIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEY----ICRHEGDGAILVFLTG 563 (908)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~----i~~~~~~g~iLVF~~~ 563 (908)
. ....+.+ ++..++.. ..+..-.|++|||.++
T Consensus 414 -~------~e~eK~~-------------------------------------ii~~L~k~E~~~~sskg~rGQtIVFT~S 449 (830)
T COG1202 414 -R------NESEKWD-------------------------------------IIARLVKREFSTESSKGYRGQTIVFTYS 449 (830)
T ss_pred -c------CchHHHH-------------------------------------HHHHHHHHHHhhhhccCcCCceEEEecc
Confidence 0 0001111 12222221 1122346899999999
Q ss_pred HHHHHHHHHHHHhcccCCCCCceEEEeccCCCChHhHHhhhCCCCCCCcEEEEeccccccccCCCCeEEEEeCCCcccee
Q 002552 564 WNDISKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETS 643 (908)
Q Consensus 564 ~~~i~~l~~~L~~~~~~~~~~~~~v~~lH~~l~~~er~~v~~~f~~g~~kIlvaT~iae~GidIp~v~~VId~g~~k~~~ 643 (908)
++.|+.+++.|.. .++.+.++|++|+..+|+.+...|..+.+.++|+|..++.|+|+|+-.+|..+=
T Consensus 450 Rrr~h~lA~~L~~-------kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTAAL~AGVDFPASQVIFEsL------ 516 (830)
T COG1202 450 RRRCHELADALTG-------KGLKAAPYHAGLPYKERKSVERAFAAQELAAVVTTAALAAGVDFPASQVIFESL------ 516 (830)
T ss_pred hhhHHHHHHHhhc-------CCcccccccCCCcHHHHHHHHHHHhcCCcceEeehhhhhcCCCCchHHHHHHHH------
Confidence 9999999999987 567788899999999999999999999999999999999999999766655421
Q ss_pred eccccCccccccccccHhhHHHhccccCCC---CCcEEEEecChh-hHh-hcCC----------CCCCc--ccc---Cch
Q 002552 644 YDALNKLACLLPSWISKASAHQRRGRAGRV---QPGVCYKLYPRI-IHD-AMLP----------YQLPE--ILR---TPL 703 (908)
Q Consensus 644 yd~~~~~~~l~~~~iS~~~~~QR~GRaGR~---~~G~~~~l~~~~-~~~-~l~~----------~~~pe--i~r---~~L 703 (908)
.+...|+|..+|.|+.|||||. ..|++|.|.... .|+ +|.+ ...|| +.. ..-
T Consensus 517 --------aMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg~~Y~~~m~~TEdevA~kLL~s~~e~V~vey~ee~e 588 (830)
T COG1202 517 --------AMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPGKKYHASMEETEDEVAFKLLESEPEPVIVEYDEEDE 588 (830)
T ss_pred --------HcccccCCHHHHHHHhcccCCCCcccCceEEEEecCChhhcccccccHHHHHHHHhcCCCCcceeccCcHHH
Confidence 2346799999999999999999 569999997642 232 2221 11222 111 111
Q ss_pred HHHHHHHhhcCCCc----hhhhhhccCCCCCHHHHHHHHHHHHHcCCCCCCC---CcCccccccccccCCchhhHHHHHh
Q 002552 704 QELCLHIKSLQLGT----VGSFLSKALQPPDPLAVQNAIELLKTIGALDDME---NLTPLGRHLCTLPVDPNIGKMLLMG 776 (908)
Q Consensus 704 ~~~~L~~~~l~~~~----~~~fl~~~~~~p~~~~v~~al~~L~~~gal~~~~---~lT~lG~~~~~lpl~p~~~k~l~~~ 776 (908)
.+-+|. ..+..+ +...-+..+- ..-....++..|++.|+|+.++ ++|+.|++++..-+.|..+..|..+
T Consensus 589 ~e~vLA--~~~v~~s~~~i~~v~~~~~g--~~~~~~k~l~~Lee~g~i~~~G~~v~~T~yGrava~~Fl~p~~a~~Ir~~ 664 (830)
T COG1202 589 EENVLA--SAGVTNSLSVIERVNSLMLG--AAFDPKKALSKLEEYGMIKKKGNIVRPTPYGRAVAMSFLGPSEAEFIREG 664 (830)
T ss_pred HHHHHH--HhhhcCcHHHHhhcChhhcc--ccCCHHHHHHHHHhcCCeeccCCEeeeccccceeEEeecCchHHHHHHHh
Confidence 122222 112111 1111100110 1123578899999999999775 6999999999999999999999887
Q ss_pred hhccChHHHHHHHhhhc
Q 002552 777 AIFQCLNPALTIAAALA 793 (908)
Q Consensus 777 ~~~~c~~~~l~i~a~l~ 793 (908)
+ ....+| +-|++.|.
T Consensus 665 v-~~~~~p-l~i~~~l~ 679 (830)
T COG1202 665 V-LASMDP-LRIAAELE 679 (830)
T ss_pred h-hccCCh-HhHhhccc
Confidence 6 333444 44555444
No 46
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=6e-37 Score=364.13 Aligned_cols=507 Identities=19% Similarity=0.188 Sum_probs=324.3
Q ss_pred chHHHHHHHHH-HHhCCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCCE
Q 002552 283 AFKMKAEFLKA-VAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLGET 361 (908)
Q Consensus 283 i~~~Q~~~i~~-i~~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~~~~~~~g~~ 361 (908)
+++.|++.+.. +.+++|++||+|||||||..+.+.|+..+... +.++++++|+|+||.++++++. .-+..|..
T Consensus 32 l~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~----~~k~vYivPlkALa~Ek~~~~~--~~~~~Gir 105 (766)
T COG1204 32 LFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEG----GGKVVYIVPLKALAEEKYEEFS--RLEELGIR 105 (766)
T ss_pred hhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhc----CCcEEEEeChHHHHHHHHHHhh--hHHhcCCE
Confidence 34456655555 55679999999999999999999999887543 4589999999999999999998 22334555
Q ss_pred EeEEeecccc---CCCCCcEEEEchHHHHHHHhcCC-CCCcceEEEEechhc-----cchhhHHHHHHHHHHCccCCCCc
Q 002552 362 VGYQIRLESK---RSAQTRLLFCTTGVLLRQLVEDP-DLSCVSHLLVDEIHE-----RGMNEDFLLIILRDLLPRRPDLR 432 (908)
Q Consensus 362 vg~~~~~~~~---~~~~~~Iiv~T~g~Ll~~l~~~~-~l~~~~~iIiDEaHe-----R~~~~d~ll~~lk~~~~~~~~~q 432 (908)
|+-..+.... ...+++|+|+||+.+...+++.+ ++..+++|||||+|- |+.-. ..++.++....+..|
T Consensus 106 V~~~TgD~~~~~~~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~RG~~l---E~iv~r~~~~~~~~r 182 (766)
T COG1204 106 VGISTGDYDLDDERLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRTRGPVL---ESIVARMRRLNELIR 182 (766)
T ss_pred EEEecCCcccchhhhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCcccCcee---hhHHHHHHhhCcceE
Confidence 6555443332 23579999999999999998877 789999999999993 55444 444555555666799
Q ss_pred EEEecccC-ChHHHHhhhCCCCccccCCccccceeeehhhHHHhhhcccCcccccccccccccccccchhhhHhhhhhcc
Q 002552 433 LILMSATI-NADLFSKYFGNAPTVHIPGLTFPVTDLFLEDVLEKTRYKMNSKLDSFQGNSRRSRRQDSKKDHLTALFEDV 511 (908)
Q Consensus 433 iIlmSAT~-~~~~~~~~f~~~~~i~v~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (908)
+|++|||+ |.+.+++|++..++ ....+..|....-.. ....+. ..... +.
T Consensus 183 ivgLSATlpN~~evA~wL~a~~~-~~~~rp~~l~~~v~~---~~~~~~-------~~~~~--------k~---------- 233 (766)
T COG1204 183 IVGLSATLPNAEEVADWLNAKLV-ESDWRPVPLRRGVPY---VGAFLG-------ADGKK--------KT---------- 233 (766)
T ss_pred EEEEeeecCCHHHHHHHhCCccc-ccCCCCcccccCCcc---ceEEEE-------ecCcc--------cc----------
Confidence 99999999 78899999987654 222222221100000 000000 00000 00
Q ss_pred cccccccchhhhhHhhHhhhhhhhhchHHHHHHHHHHHhccCCCcEEEecCCHHHHHHHHHHHHh---c-----------
Q 002552 512 DIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICRHEGDGAILVFLTGWNDISKLLDQIKV---N----------- 577 (908)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~~~~g~iLVF~~~~~~i~~l~~~L~~---~----------- 577 (908)
| ....+ +....++...+ ..++++||||++++.+...+..|.. .
T Consensus 234 -------------------~-~~~~~-~~~~~~v~~~~--~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~ 290 (766)
T COG1204 234 -------------------W-PLLID-NLALELVLESL--AEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLD 290 (766)
T ss_pred -------------------c-cccch-HHHHHHHHHHH--hcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhcc
Confidence 0 00000 11112222222 4578999999999999999888873 0
Q ss_pred ----ccCC------------CCCceEEEeccCCCChHhHHhhhCCCCCCCcEEEEeccccccccCCCCeEEEEeCCCccc
Q 002552 578 ----KFLG------------DPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDCGKAKE 641 (908)
Q Consensus 578 ----~~~~------------~~~~~~v~~lH~~l~~~er~~v~~~f~~g~~kIlvaT~iae~GidIp~v~~VId~g~~k~ 641 (908)
.... ......+..||++|+.++|..+.+.|+.|+++||+||++++.|+|+|.-++||- ..
T Consensus 291 ~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAGL~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk----~~ 366 (766)
T COG1204 291 EGASPILIPETPTSEDEELAELVLRGVAFHHAGLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIK----DT 366 (766)
T ss_pred ccccccccccccccchHHHHHHHHhCccccccCCCHHHHHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEe----ee
Confidence 0110 112457899999999999999999999999999999999999999998777774 35
Q ss_pred eeeccccCccccccccccHhhHHHhccccCCC---CCcEEEEec-Chh---hHhhcCCCCCCccccCc------hHHHHH
Q 002552 642 TSYDALNKLACLLPSWISKASAHQRRGRAGRV---QPGVCYKLY-PRI---IHDAMLPYQLPEILRTP------LQELCL 708 (908)
Q Consensus 642 ~~yd~~~~~~~l~~~~iS~~~~~QR~GRaGR~---~~G~~~~l~-~~~---~~~~l~~~~~pei~r~~------L~~~~L 708 (908)
..||+..+ ...|++.+++|+.|||||+ .-|..+.+. +.+ .+........||..... +...++
T Consensus 367 ~~y~~~~g-----~~~i~~~dv~QM~GRAGRPg~d~~G~~~i~~~~~~~~~~~~~~~~~~~~e~~~s~l~~~~~~~~~l~ 441 (766)
T COG1204 367 RRYDPKGG-----IVDIPVLDVLQMAGRAGRPGYDDYGEAIILATSHDELEYLAELYIQSEPEPIESKLGDELNLRTFLL 441 (766)
T ss_pred EEEcCCCC-----eEECchhhHhhccCcCCCCCcCCCCcEEEEecCccchhHHHHHhhccCcchHHHhhcccccchheEE
Confidence 56887333 4567889999999999999 346666655 222 22334445555542111 222222
Q ss_pred HHhhcCC----CchhhhhhccCCCCC-------HHHHHHHHHHHHHcC-CCCCCC---CcCccccccccccCCchhhHHH
Q 002552 709 HIKSLQL----GTVGSFLSKALQPPD-------PLAVQNAIELLKTIG-ALDDME---NLTPLGRHLCTLPVDPNIGKML 773 (908)
Q Consensus 709 ~~~~l~~----~~~~~fl~~~~~~p~-------~~~v~~al~~L~~~g-al~~~~---~lT~lG~~~~~lpl~p~~~k~l 773 (908)
.+.+.+. .....|+..++..|. ...+..+++.|.+.+ +++... ..|++|+.++.+.++|..++.+
T Consensus 442 ~v~~~~~~v~~~~~~~f~~~t~~~~~~~~~~~~~~~i~~~~~~L~~~~~~~~~~~~~~~ate~g~~~s~~yi~~~sa~~~ 521 (766)
T COG1204 442 GVISVGDAVSWLELTDFYERTFYNPQTYGEGMLREEILASLRYLEENGLILDADWEALHATELGKLVSRLYIDPESAKIF 521 (766)
T ss_pred EEEeccchhhHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHHHhccceeeccccccchhHHHHHhhhccCCHHHHHHH
Confidence 2222211 123445555544443 456888999999986 555432 5899999999999999999988
Q ss_pred HHhhhcc----ChHHHHHHHhhhccCCCCCCccccHHHHHHHHHhhcCCCCCcHH-------------------HHHHHH
Q 002552 774 LMGAIFQ----CLNPALTIAAALAHRNPFVLPVNMQKEVDEAKRSFAGDSCSDHI-------------------ALLKAF 830 (908)
Q Consensus 774 ~~~~~~~----c~~~~l~i~a~l~~~~~f~~p~~~~~~~~~~~~~~~~~~~sD~l-------------------~~l~~f 830 (908)
......- +....+..++..+...+. +...++........+.. .+|.+ .....+
T Consensus 522 ~~~l~~~~~~~~~~~~l~~is~~pd~~~~--~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~e~~~~l~~~~~~~~l 597 (766)
T COG1204 522 RDLLAELALEPTEIGLLYLISLTPDLMPI--KLRERESSELVLDELEE--QSDYLLGERLDELAVEYNLLLQALKTAARL 597 (766)
T ss_pred HHHHHHhccccchHHHhhhhhcCccchhh--hhhhhhhhhhhHHHHHh--cchHHhhccccccchhhHHHHHHHHHHHHH
Confidence 7665432 222333333322221111 11111111111111110 11111 133455
Q ss_pred HHHHHHHcCCcHHHHHHHhcCCHHHHHHHHHHHHHH
Q 002552 831 DGYKDAKRNRRERDFCWENFLSPITLQMMEDMRSQF 866 (908)
Q Consensus 831 ~~w~~~~~~~~~~~~c~~~~l~~~~l~~~~~~r~ql 866 (908)
..|.. +..+...|.++++....+..+...+.|+
T Consensus 598 ~~wi~---~~~~~~i~~~~~~~~~dl~~~~~~a~w~ 630 (766)
T COG1204 598 LDWIN---EADEDEILNAYGVAPGDLLRIAETAEWL 630 (766)
T ss_pred HHHHH---hCcHHHHHHHhCcchhhHHhhcchhhhh
Confidence 67776 3456789999999999999999999998
No 47
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.3e-37 Score=319.11 Aligned_cols=339 Identities=20% Similarity=0.230 Sum_probs=252.3
Q ss_pred CchHHHhHHHHHHHHHHHhccChhHHHHHHhhcCCCchHHHHHHHHHHHhC--CeEEEEecCCCCccchHHHHHHHHHHh
Q 002552 247 SDSAKERLNVILKERQEKLKSSDSGKAMLSFREKLPAFKMKAEFLKAVAEN--QVLVVSGETGCGKTTQLPQFILEEELS 324 (908)
Q Consensus 247 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~r~~lpi~~~Q~~~i~~i~~~--~~vii~a~TGSGKTt~~~~~il~~~~~ 324 (908)
.++.+.++..+|...+-. .+.=.+..+|+.++|.++.+ +++|.++..|+|||++|.+.+|...-.
T Consensus 90 ksFeeL~LkPellkgly~-------------M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~ 156 (477)
T KOG0332|consen 90 KSFEELRLKPELLKGLYA-------------MKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDP 156 (477)
T ss_pred ccHHhhCCCHHHHhHHHH-------------hccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCc
Confidence 355566666655554433 33344567999999999875 799999999999999999999987643
Q ss_pred ccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCCEEeEEeeccccCC---CCCcEEEEchHHHHHHHhcCC--CCCcc
Q 002552 325 SLRGADCNIICTQPRRISAISVAARVSSERGENLGETVGYQIRLESKRS---AQTRLLFCTTGVLLRQLVEDP--DLSCV 399 (908)
Q Consensus 325 ~~~~~~~~ilv~~P~r~la~qi~~rv~~~~~~~~g~~vg~~~~~~~~~~---~~~~Iiv~T~g~Ll~~l~~~~--~l~~~ 399 (908)
. -..+..+|+.|+|+||.|+-+.+ .++|...+.+..|.++...... -..+|++.|||.+++++..-. .++.+
T Consensus 157 ~--~~~PQ~iCLaPtrELA~Q~~eVv-~eMGKf~~ita~yair~sk~~rG~~i~eqIviGTPGtv~Dlm~klk~id~~ki 233 (477)
T KOG0332|consen 157 D--VVVPQCICLAPTRELAPQTGEVV-EEMGKFTELTASYAIRGSKAKRGNKLTEQIVIGTPGTVLDLMLKLKCIDLEKI 233 (477)
T ss_pred c--ccCCCceeeCchHHHHHHHHHHH-HHhcCceeeeEEEEecCcccccCCcchhheeeCCCccHHHHHHHHHhhChhhc
Confidence 2 23567899999999999998766 6777776788889888763221 146899999999999988733 78999
Q ss_pred eEEEEechhccchhhH-HHHHHHHHHCccCCCCcEEEecccCChHH--HH-hhhCCCCccccCCcc---ccceeeehhhH
Q 002552 400 SHLLVDEIHERGMNED-FLLIILRDLLPRRPDLRLILMSATINADL--FS-KYFGNAPTVHIPGLT---FPVTDLFLEDV 472 (908)
Q Consensus 400 ~~iIiDEaHeR~~~~d-~ll~~lk~~~~~~~~~qiIlmSAT~~~~~--~~-~~f~~~~~i~v~~~~---~~v~~~~l~~~ 472 (908)
.++|+|||+ -++++. |-..-++......++.|+|++|||..... |. ....++.++.+..+. .+|.++|+...
T Consensus 234 kvfVlDEAD-~Mi~tqG~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel~L~~IkQlyv~C~ 312 (477)
T KOG0332|consen 234 KVFVLDEAD-VMIDTQGFQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILKREELALDNIKQLYVLCA 312 (477)
T ss_pred eEEEecchh-hhhhcccccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeeehhhccccchhhheeecc
Confidence 999999999 445554 33333333333446899999999996543 43 344455444443322 33444443211
Q ss_pred HHhhhcccCcccccccccccccccccchhhhHhhhhhcccccccccchhhhhHhhHhhhhhhhhchHHHHHHHHHHHhcc
Q 002552 473 LEKTRYKMNSKLDSFQGNSRRSRRQDSKKDHLTALFEDVDIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICRHE 552 (908)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~~ 552 (908)
.+ +-...++..+....
T Consensus 313 ~~----------------------------------------------------------------~~K~~~l~~lyg~~ 328 (477)
T KOG0332|consen 313 CR----------------------------------------------------------------DDKYQALVNLYGLL 328 (477)
T ss_pred ch----------------------------------------------------------------hhHHHHHHHHHhhh
Confidence 00 00122333344334
Q ss_pred CCCcEEEecCCHHHHHHHHHHHHhcccCCCCCceEEEeccCCCChHhHHhhhCCCCCCCcEEEEeccccccccCCCCeEE
Q 002552 553 GDGAILVFLTGWNDISKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVY 632 (908)
Q Consensus 553 ~~g~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lH~~l~~~er~~v~~~f~~g~~kIlvaT~iae~GidIp~v~~ 632 (908)
.-|+.||||.|++.+.+++..|.. .++.|..+||+|.-++|..+.+.|+.|+-||||+|||.+||||++-|++
T Consensus 329 tigqsiIFc~tk~ta~~l~~~m~~-------~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv~qVs~ 401 (477)
T KOG0332|consen 329 TIGQSIIFCHTKATAMWLYEEMRA-------EGHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARGIDVAQVSV 401 (477)
T ss_pred hhhheEEEEeehhhHHHHHHHHHh-------cCceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhhcccccceEEE
Confidence 457899999999999999999998 6888999999999999999999999999999999999999999999999
Q ss_pred EEeCCCccceeeccccCccccccccccHhhHHHhccccCCC-CCcEEEEecChh
Q 002552 633 VVDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRV-QPGVCYKLYPRI 685 (908)
Q Consensus 633 VId~g~~k~~~yd~~~~~~~l~~~~iS~~~~~QR~GRaGR~-~~G~~~~l~~~~ 685 (908)
||||++|-... .. -..+.|+||+|||||. +.|.+|.|....
T Consensus 402 VvNydlP~~~~--~~----------pD~etYlHRiGRtGRFGkkG~a~n~v~~~ 443 (477)
T KOG0332|consen 402 VVNYDLPVKYT--GE----------PDYETYLHRIGRTGRFGKKGLAINLVDDK 443 (477)
T ss_pred EEecCCccccC--CC----------CCHHHHHHHhcccccccccceEEEeeccc
Confidence 99999996322 11 1455899999999999 789999998754
No 48
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=2.3e-36 Score=350.05 Aligned_cols=305 Identities=17% Similarity=0.207 Sum_probs=216.4
Q ss_pred CchHHHHHHHHHHHhCCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCCE
Q 002552 282 PAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLGET 361 (908)
Q Consensus 282 pi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~~~~~~~g~~ 361 (908)
-++++|.++|+.+++++++++++|||||||+++.++++.. ...+||+.|+|+|+.|.++++.. .+..
T Consensus 11 ~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~--------~~~~lVi~P~~~L~~dq~~~l~~-~gi~---- 77 (470)
T TIGR00614 11 SFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCS--------DGITLVISPLISLMEDQVLQLKA-SGIP---- 77 (470)
T ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHc--------CCcEEEEecHHHHHHHHHHHHHH-cCCc----
Confidence 3567999999999999999999999999999988887752 24688899999999999888854 3322
Q ss_pred EeEEeecc----------ccCCCCCcEEEEchHHHHHHH--hcCC-CCCcceEEEEechhccc-hhhHHHHHH--HHHHC
Q 002552 362 VGYQIRLE----------SKRSAQTRLLFCTTGVLLRQL--VEDP-DLSCVSHLLVDEIHERG-MNEDFLLII--LRDLL 425 (908)
Q Consensus 362 vg~~~~~~----------~~~~~~~~Iiv~T~g~Ll~~l--~~~~-~l~~~~~iIiDEaHeR~-~~~d~ll~~--lk~~~ 425 (908)
+.+..... .......+|+|+||+++.... .... .+.++++|||||||... +..+|...+ +..+.
T Consensus 78 ~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~~l~~l~ 157 (470)
T TIGR00614 78 ATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDYKALGSLK 157 (470)
T ss_pred EEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHHHHHHHHH
Confidence 22211110 112335789999999875321 1111 46789999999999532 122333332 22344
Q ss_pred ccCCCCcEEEecccCChHH---HHhhhCC-CCccccCCccccceeeehhhHHHhhhcccCcccccccccccccccccchh
Q 002552 426 PRRPDLRLILMSATINADL---FSKYFGN-APTVHIPGLTFPVTDLFLEDVLEKTRYKMNSKLDSFQGNSRRSRRQDSKK 501 (908)
Q Consensus 426 ~~~~~~qiIlmSAT~~~~~---~~~~f~~-~~~i~v~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (908)
...|+.+++++|||++... +.++++- .+.+.......|. .+| ... .+
T Consensus 158 ~~~~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s~~r~n-l~~----------~v~-----------------~~- 208 (470)
T TIGR00614 158 QKFPNVPIMALTATASPSVREDILRQLNLKNPQIFCTSFDRPN-LYY----------EVR-----------------RK- 208 (470)
T ss_pred HHcCCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCCCCCCC-cEE----------EEE-----------------eC-
Confidence 4567899999999998764 3334321 1111111000000 000 000 00
Q ss_pred hhHhhhhhcccccccccchhhhhHhhHhhhhhhhhchHHHHHHHHHHHhccCCCcEEEecCCHHHHHHHHHHHHhcccCC
Q 002552 502 DHLTALFEDVDIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICRHEGDGAILVFLTGWNDISKLLDQIKVNKFLG 581 (908)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~~ 581 (908)
....+..++..+.....+..+||||+++++++.+++.|..
T Consensus 209 -----------------------------------~~~~~~~l~~~l~~~~~~~~~IIF~~s~~~~e~la~~L~~----- 248 (470)
T TIGR00614 209 -----------------------------------TPKILEDLLRFIRKEFKGKSGIIYCPSRKKSEQVTASLQN----- 248 (470)
T ss_pred -----------------------------------CccHHHHHHHHHHHhcCCCceEEEECcHHHHHHHHHHHHh-----
Confidence 0001223333343334455679999999999999999987
Q ss_pred CCCceEEEeccCCCChHhHHhhhCCCCCCCcEEEEeccccccccCCCCeEEEEeCCCccceeeccccCccccccccccHh
Q 002552 582 DPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETSYDALNKLACLLPSWISKA 661 (908)
Q Consensus 582 ~~~~~~v~~lH~~l~~~er~~v~~~f~~g~~kIlvaT~iae~GidIp~v~~VId~g~~k~~~yd~~~~~~~l~~~~iS~~ 661 (908)
.++.+.++||+|++++|+++++.|++|+.+|||||+++++|||+|+|++||++++|+ |.+
T Consensus 249 --~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~P~------------------s~~ 308 (470)
T TIGR00614 249 --LGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSLPK------------------SME 308 (470)
T ss_pred --cCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeCCCC------------------CHH
Confidence 467789999999999999999999999999999999999999999999999999999 777
Q ss_pred hHHHhccccCCC-CCcEEEEecChhhHh
Q 002552 662 SAHQRRGRAGRV-QPGVCYKLYPRIIHD 688 (908)
Q Consensus 662 ~~~QR~GRaGR~-~~G~~~~l~~~~~~~ 688 (908)
+|+||+|||||. .+|.|+.+|+..+..
T Consensus 309 ~y~Qr~GRaGR~G~~~~~~~~~~~~d~~ 336 (470)
T TIGR00614 309 SYYQESGRAGRDGLPSECHLFYAPADIN 336 (470)
T ss_pred HHHhhhcCcCCCCCCceEEEEechhHHH
Confidence 999999999999 789999999987653
No 49
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=1.4e-36 Score=361.22 Aligned_cols=322 Identities=17% Similarity=0.123 Sum_probs=221.9
Q ss_pred hccChhHHHHHHhhc-CCCchHHHHHHHHHHHhCCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHH
Q 002552 265 LKSSDSGKAMLSFRE-KLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISA 343 (908)
Q Consensus 265 ~~~~~~~~~~~~~r~-~lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la 343 (908)
++++..+...++.-- .--.+++|.++|++++.++++++++|||+|||++|.+|++.. .+.+||+.|+++|+
T Consensus 442 fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~--------~GiTLVISPLiSLm 513 (1195)
T PLN03137 442 FPWTKKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC--------PGITLVISPLVSLI 513 (1195)
T ss_pred CCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc--------CCcEEEEeCHHHHH
Confidence 455555554444322 235678999999999999999999999999999999998753 24789999999999
Q ss_pred HHHHHHHHHHhCCCCCCEEeEEeecc---------c---cCCCCCcEEEEchHHHHH------HHhcCCCCCcceEEEEe
Q 002552 344 ISVAARVSSERGENLGETVGYQIRLE---------S---KRSAQTRLLFCTTGVLLR------QLVEDPDLSCVSHLLVD 405 (908)
Q Consensus 344 ~qi~~rv~~~~~~~~g~~vg~~~~~~---------~---~~~~~~~Iiv~T~g~Ll~------~l~~~~~l~~~~~iIiD 405 (908)
.+....+.. . |..+.+..... . ......+|+|+||++|.. .+..-.....+++||||
T Consensus 514 qDQV~~L~~-~----GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVID 588 (1195)
T PLN03137 514 QDQIMNLLQ-A----NIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVID 588 (1195)
T ss_pred HHHHHHHHh-C----CCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccC
Confidence 855444433 2 22222221110 0 011467999999999752 22211134568999999
Q ss_pred chhccc-hhhHHHHHHH--HHHCccCCCCcEEEecccCChHH---HHhhhCCCC-ccccCCccccceeeehhhHHHhhhc
Q 002552 406 EIHERG-MNEDFLLIIL--RDLLPRRPDLRLILMSATINADL---FSKYFGNAP-TVHIPGLTFPVTDLFLEDVLEKTRY 478 (908)
Q Consensus 406 EaHeR~-~~~d~ll~~l--k~~~~~~~~~qiIlmSAT~~~~~---~~~~f~~~~-~i~v~~~~~~v~~~~l~~~~~~~~~ 478 (908)
|||+.. +..||-..+. ..+....++.+++++|||++... +.+.++... ++...+...| ..+|.
T Consensus 589 EAHcVSqWGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~Sf~Rp-NL~y~--------- 658 (1195)
T PLN03137 589 EAHCVSQWGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQSFNRP-NLWYS--------- 658 (1195)
T ss_pred cchhhhhcccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeecccCcc-ceEEE---------
Confidence 999532 2234544332 23445567889999999997653 344443211 1111100000 00000
Q ss_pred ccCcccccccccccccccccchhhhHhhhhhcccccccccchhhhhHhhHhhhhhhhhchHHHHHHHHHHHhccCCCcEE
Q 002552 479 KMNSKLDSFQGNSRRSRRQDSKKDHLTALFEDVDIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICRHEGDGAIL 558 (908)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~~~~g~iL 558 (908)
+. .+. ...+..+...+.........|
T Consensus 659 -Vv-----------------~k~------------------------------------kk~le~L~~~I~~~~~~esgI 684 (1195)
T PLN03137 659 -VV-----------------PKT------------------------------------KKCLEDIDKFIKENHFDECGI 684 (1195)
T ss_pred -Ee-----------------ccc------------------------------------hhHHHHHHHHHHhcccCCCce
Confidence 00 000 000112222332233356789
Q ss_pred EecCCHHHHHHHHHHHHhcccCCCCCceEEEeccCCCChHhHHhhhCCCCCCCcEEEEeccccccccCCCCeEEEEeCCC
Q 002552 559 VFLTGWNDISKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDCGK 638 (908)
Q Consensus 559 VF~~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lH~~l~~~er~~v~~~f~~g~~kIlvaT~iae~GidIp~v~~VId~g~ 638 (908)
|||.++++++.+++.|.. .++.+.++||+|++++|..+++.|..|+.+|||||+++++|||+|+|++||++++
T Consensus 685 IYC~SRke~E~LAe~L~~-------~Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFGMGIDkPDVR~VIHydl 757 (1195)
T PLN03137 685 IYCLSRMDCEKVAERLQE-------FGHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSL 757 (1195)
T ss_pred eEeCchhHHHHHHHHHHH-------CCCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechhhcCCCccCCcEEEEcCC
Confidence 999999999999999987 5678999999999999999999999999999999999999999999999999999
Q ss_pred ccceeeccccCccccccccccHhhHHHhccccCCC-CCcEEEEecChhhHh
Q 002552 639 AKETSYDALNKLACLLPSWISKASAHQRRGRAGRV-QPGVCYKLYPRIIHD 688 (908)
Q Consensus 639 ~k~~~yd~~~~~~~l~~~~iS~~~~~QR~GRaGR~-~~G~~~~l~~~~~~~ 688 (908)
|+ |.++|+||+|||||. .+|.|+.||+..++.
T Consensus 758 Pk------------------SiEsYyQriGRAGRDG~~g~cILlys~~D~~ 790 (1195)
T PLN03137 758 PK------------------SIEGYHQECGRAGRDGQRSSCVLYYSYSDYI 790 (1195)
T ss_pred CC------------------CHHHHHhhhcccCCCCCCceEEEEecHHHHH
Confidence 99 777999999999999 789999999987653
No 50
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=9.9e-36 Score=365.34 Aligned_cols=395 Identities=21% Similarity=0.199 Sum_probs=247.0
Q ss_pred chHHHHHHHHHHHhCCeEEEEecCCCCccchHHHHHHHHHHhccC----CCCcEEEEEcccHHHHHHHHHHHHHH-----
Q 002552 283 AFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLR----GADCNIICTQPRRISAISVAARVSSE----- 353 (908)
Q Consensus 283 i~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~----~~~~~ilv~~P~r~la~qi~~rv~~~----- 353 (908)
++++|.++++.++++++++++||||||||.++.+++++.+..... ...+++|+++|+|+||.|+++++.+.
T Consensus 33 ~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraLa~di~~~L~~~l~~i~ 112 (876)
T PRK13767 33 FTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRALNNDIHRNLEEPLTEIR 112 (876)
T ss_pred CCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHHHHHHHHHHHHHHHHHH
Confidence 788999999999999999999999999999999999988764321 23568999999999999998765421
Q ss_pred -----hCCCC-CCEEeEEeeccc------cCCCCCcEEEEchHHHHHHHhcCC---CCCcceEEEEechhc-----cchh
Q 002552 354 -----RGENL-GETVGYQIRLES------KRSAQTRLLFCTTGVLLRQLVEDP---DLSCVSHLLVDEIHE-----RGMN 413 (908)
Q Consensus 354 -----~~~~~-g~~vg~~~~~~~------~~~~~~~Iiv~T~g~Ll~~l~~~~---~l~~~~~iIiDEaHe-----R~~~ 413 (908)
.+... +..++....... .....++|+|+||++|..++.+.. .|.++++|||||||+ |+..
T Consensus 113 ~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~VVIDE~H~l~~~~RG~~ 192 (876)
T PRK13767 113 EIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKWVIVDEIHSLAENKRGVH 192 (876)
T ss_pred HHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEEEEechhhhccCccHHH
Confidence 23333 333333222111 112367999999999987775432 578999999999995 2333
Q ss_pred hHHHHHHHHHHCccCCCCcEEEecccCC-hHHHHhhhCCCCccccCCccccceeeehhhHHHhhhcccCccccccccccc
Q 002552 414 EDFLLIILRDLLPRRPDLRLILMSATIN-ADLFSKYFGNAPTVHIPGLTFPVTDLFLEDVLEKTRYKMNSKLDSFQGNSR 492 (908)
Q Consensus 414 ~d~ll~~lk~~~~~~~~~qiIlmSAT~~-~~~~~~~f~~~~~i~v~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 492 (908)
....+..++.+. .++.|+|++|||+. .+.+.+|+........+.....+...+.... .......
T Consensus 193 l~~~L~rL~~l~--~~~~q~IglSATl~~~~~va~~L~~~~~~~~~r~~~iv~~~~~k~~----~i~v~~p--------- 257 (876)
T PRK13767 193 LSLSLERLEELA--GGEFVRIGLSATIEPLEEVAKFLVGYEDDGEPRDCEIVDARFVKPF----DIKVISP--------- 257 (876)
T ss_pred HHHHHHHHHHhc--CCCCeEEEEecccCCHHHHHHHhcCccccCCCCceEEEccCCCccc----eEEEecc---------
Confidence 333333333333 35789999999994 5678888764311100000000000000000 0000000
Q ss_pred ccccccchhhhHhhhhhcccccccccchhhhhHhhHhhhhhhhhchHHHHHHHHHHHhccCCCcEEEecCCHHHHHHHHH
Q 002552 493 RSRRQDSKKDHLTALFEDVDIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICRHEGDGAILVFLTGWNDISKLLD 572 (908)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~~~~g~iLVF~~~~~~i~~l~~ 572 (908)
..++.. .. ..... ..+...+..+.. ..+++||||+|++.++.++.
T Consensus 258 -----------~~~l~~----------~~-----------~~~~~-~~l~~~L~~~i~--~~~~~LVF~nTr~~ae~la~ 302 (876)
T PRK13767 258 -----------VDDLIH----------TP-----------AEEIS-EALYETLHELIK--EHRTTLIFTNTRSGAERVLY 302 (876)
T ss_pred -----------Cccccc----------cc-----------cchhH-HHHHHHHHHHHh--cCCCEEEEeCCHHHHHHHHH
Confidence 000000 00 00000 001122333322 35689999999999999999
Q ss_pred HHHhcccCCCCCceEEEeccCCCChHhHHhhhCCCCCCCcEEEEeccccccccCCCCeEEEEeCCCccceeeccccCccc
Q 002552 573 QIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETSYDALNKLAC 652 (908)
Q Consensus 573 ~L~~~~~~~~~~~~~v~~lH~~l~~~er~~v~~~f~~g~~kIlvaT~iae~GidIp~v~~VId~g~~k~~~yd~~~~~~~ 652 (908)
.|..... .......+.+|||+|++++|..+++.|++|.++|||||+++++|||||+|++||++|.|+
T Consensus 303 ~L~~~~~-~~~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~~~~P~------------ 369 (876)
T PRK13767 303 NLRKRFP-EEYDEDNIGAHHSSLSREVRLEVEEKLKRGELKVVVSSTSLELGIDIGYIDLVVLLGSPK------------ 369 (876)
T ss_pred HHHHhch-hhccccceeeeeCCCCHHHHHHHHHHHHcCCCeEEEECChHHhcCCCCCCcEEEEeCCCC------------
Confidence 9976311 001246799999999999999999999999999999999999999999999999999998
Q ss_pred cccccccHhhHHHhccccCCC----CCcEEEEecChhhHh------hcCC-CC-CCccccCchHHHHHHHhhcC------
Q 002552 653 LLPSWISKASAHQRRGRAGRV----QPGVCYKLYPRIIHD------AMLP-YQ-LPEILRTPLQELCLHIKSLQ------ 714 (908)
Q Consensus 653 l~~~~iS~~~~~QR~GRaGR~----~~G~~~~l~~~~~~~------~l~~-~~-~pei~r~~L~~~~L~~~~l~------ 714 (908)
|.++|+||+|||||. ..|.++.+-..+-.+ ...+ .. ...+...+++-++-++.++.
T Consensus 370 ------sv~~ylQRiGRaGR~~g~~~~g~ii~~~~~~l~e~~~~~~~~~~~~ie~~~~~~~~~dvl~q~i~~~~~~~~~~ 443 (876)
T PRK13767 370 ------SVSRLLQRIGRAGHRLGEVSKGRIIVVDRDDLVECAVLLKKAREGKIDRVHIPKNPLDVLAQHIVGMAIERPWD 443 (876)
T ss_pred ------CHHHHHHhcccCCCCCCCCCcEEEEEcCchhHHHHHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHHHHHcCCCC
Confidence 777999999999987 246776643322111 1111 11 11223344554444444332
Q ss_pred CCchhhhhhccC--CCCCHHHHHHHHHHHHHcCC
Q 002552 715 LGTVGSFLSKAL--QPPDPLAVQNAIELLKTIGA 746 (908)
Q Consensus 715 ~~~~~~fl~~~~--~~p~~~~v~~al~~L~~~ga 746 (908)
.+.+.+++..+. .--+.+.....++.|...++
T Consensus 444 ~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~ 477 (876)
T PRK13767 444 IEEAYNIVRRAYPYRDLSDEDFESVLRYLAGDYG 477 (876)
T ss_pred HHHHHHHHhccCCcccCCHHHHHHHHHHHhccCc
Confidence 122333333221 11245778888998877643
No 51
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=7.1e-36 Score=354.75 Aligned_cols=303 Identities=19% Similarity=0.215 Sum_probs=216.0
Q ss_pred CchHHHHHHHHHHHhCCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCCE
Q 002552 282 PAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLGET 361 (908)
Q Consensus 282 pi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~~~~~~~g~~ 361 (908)
..+++|.++++.+++++++++++|||||||+++.++++.. ...+||++|+++|+.|+...+.. .+..
T Consensus 25 ~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~--------~g~tlVisPl~sL~~dqv~~l~~-~gi~---- 91 (607)
T PRK11057 25 QFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL--------DGLTLVVSPLISLMKDQVDQLLA-NGVA---- 91 (607)
T ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc--------CCCEEEEecHHHHHHHHHHHHHH-cCCc----
Confidence 4567999999999999999999999999999888887743 23688899999999999888754 3322
Q ss_pred EeEEeec----------cccCCCCCcEEEEchHHHHHH-HhcCCCCCcceEEEEechhccch-hhHHHHH--HHHHHCcc
Q 002552 362 VGYQIRL----------ESKRSAQTRLLFCTTGVLLRQ-LVEDPDLSCVSHLLVDEIHERGM-NEDFLLI--ILRDLLPR 427 (908)
Q Consensus 362 vg~~~~~----------~~~~~~~~~Iiv~T~g~Ll~~-l~~~~~l~~~~~iIiDEaHeR~~-~~d~ll~--~lk~~~~~ 427 (908)
+.+.... ........+|+|+||++|+.. +.......++++|||||||+..- ..+|... .+..+...
T Consensus 92 ~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~~G~~fr~~y~~L~~l~~~ 171 (607)
T PRK11057 92 AACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQWGHDFRPEYAALGQLRQR 171 (607)
T ss_pred EEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccccccccCcccHHHHHHHHHHHh
Confidence 2221110 111233578999999998732 22222345799999999996421 1233322 23344455
Q ss_pred CCCCcEEEecccCChHHH---HhhhC-CCCccccCCccccceeeehhhHHHhhhcccCcccccccccccccccccchhhh
Q 002552 428 RPDLRLILMSATINADLF---SKYFG-NAPTVHIPGLTFPVTDLFLEDVLEKTRYKMNSKLDSFQGNSRRSRRQDSKKDH 503 (908)
Q Consensus 428 ~~~~qiIlmSAT~~~~~~---~~~f~-~~~~i~v~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (908)
.|+.++++||||++.... .+.++ ..+.+.+.....|. ..| ... .+
T Consensus 172 ~p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~~~~~r~n-l~~----------~v~-----------------~~--- 220 (607)
T PRK11057 172 FPTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSFDRPN-IRY----------TLV-----------------EK--- 220 (607)
T ss_pred CCCCcEEEEecCCChhHHHHHHHHhCCCCeEEEECCCCCCc-cee----------eee-----------------ec---
Confidence 678999999999976542 23322 12222111100000 000 000 00
Q ss_pred HhhhhhcccccccccchhhhhHhhHhhhhhhhhchHHHHHHHHHHHhccCCCcEEEecCCHHHHHHHHHHHHhcccCCCC
Q 002552 504 LTALFEDVDIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICRHEGDGAILVFLTGWNDISKLLDQIKVNKFLGDP 583 (908)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~~~~ 583 (908)
...+..++..+ ....+.++||||+++++++.+++.|..
T Consensus 221 ----------------------------------~~~~~~l~~~l-~~~~~~~~IIFc~tr~~~e~la~~L~~------- 258 (607)
T PRK11057 221 ----------------------------------FKPLDQLMRYV-QEQRGKSGIIYCNSRAKVEDTAARLQS------- 258 (607)
T ss_pred ----------------------------------cchHHHHHHHH-HhcCCCCEEEEECcHHHHHHHHHHHHh-------
Confidence 00011222222 234567899999999999999999987
Q ss_pred CceEEEeccCCCChHhHHhhhCCCCCCCcEEEEeccccccccCCCCeEEEEeCCCccceeeccccCccccccccccHhhH
Q 002552 584 NKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETSYDALNKLACLLPSWISKASA 663 (908)
Q Consensus 584 ~~~~v~~lH~~l~~~er~~v~~~f~~g~~kIlvaT~iae~GidIp~v~~VId~g~~k~~~yd~~~~~~~l~~~~iS~~~~ 663 (908)
.++.+.++||+|++++|+++++.|+.|..+|||||+++++|||+|+|++||++++|+ |.++|
T Consensus 259 ~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~VI~~d~P~------------------s~~~y 320 (607)
T PRK11057 259 RGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPR------------------NIESY 320 (607)
T ss_pred CCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEEEEeCCCC------------------CHHHH
Confidence 467799999999999999999999999999999999999999999999999999998 77799
Q ss_pred HHhccccCCC-CCcEEEEecChhhHh
Q 002552 664 HQRRGRAGRV-QPGVCYKLYPRIIHD 688 (908)
Q Consensus 664 ~QR~GRaGR~-~~G~~~~l~~~~~~~ 688 (908)
+||+|||||. .+|.|+.||+..+..
T Consensus 321 ~Qr~GRaGR~G~~~~~ill~~~~d~~ 346 (607)
T PRK11057 321 YQETGRAGRDGLPAEAMLFYDPADMA 346 (607)
T ss_pred HHHhhhccCCCCCceEEEEeCHHHHH
Confidence 9999999999 679999999987653
No 52
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.3e-36 Score=347.59 Aligned_cols=337 Identities=18% Similarity=0.247 Sum_probs=251.5
Q ss_pred HHHhccChhHHHHHHhhcCCCchHHHHHHHHHHHhCCeEEEEecCCCCccchHHHHHHHHHHhcc---CCCCcEEEEEcc
Q 002552 262 QEKLKSSDSGKAMLSFREKLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSL---RGADCNIICTQP 338 (908)
Q Consensus 262 ~~~~~~~~~~~~~~~~r~~lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~~~~il~~~~~~~---~~~~~~ilv~~P 338 (908)
|.+...+...-+.++.-..=+++++|.++||+|..|++||.+|.||||||.+|.+|++.+...+. .+.++..|+++|
T Consensus 367 W~q~gl~~~il~tlkkl~y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi~li~aP 446 (997)
T KOG0334|consen 367 WTQCGLSSKILETLKKLGYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPIALILAP 446 (997)
T ss_pred HhhCCchHHHHHHHHHhcCCCCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCChhhCCCceEEEEcC
Confidence 33334444444444444445788899999999999999999999999999999999997766442 345788899999
Q ss_pred cHHHHHHHHHHHHHHhCCCCCCEE--eEE-e---eccccCCCCCcEEEEchHHHHHHHhcCC----CCCcceEEEEechh
Q 002552 339 RRISAISVAARVSSERGENLGETV--GYQ-I---RLESKRSAQTRLLFCTTGVLLRQLVEDP----DLSCVSHLLVDEIH 408 (908)
Q Consensus 339 ~r~la~qi~~rv~~~~~~~~g~~v--g~~-~---~~~~~~~~~~~Iiv~T~g~Ll~~l~~~~----~l~~~~~iIiDEaH 408 (908)
||+||.||.+.+.++... ++..+ -|. . .+.....+++.|+|||||++++.+..+. +|.++++||+||||
T Consensus 447 trela~QI~r~~~kf~k~-l~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~deaD 525 (997)
T KOG0334|consen 447 TRELAMQIHREVRKFLKL-LGIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEAD 525 (997)
T ss_pred CHHHHHHHHHHHHHHHhh-cCceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCccccccccceeeechhh
Confidence 999999999998887554 44332 121 1 1122234579999999999999886543 67888899999999
Q ss_pred ccchhhHHHHHHHHHHCccCCCCcEEEecccCChHH--HHhhhCCCCc-cccCCccccceeeehhhHHHhhhcccCcccc
Q 002552 409 ERGMNEDFLLIILRDLLPRRPDLRLILMSATINADL--FSKYFGNAPT-VHIPGLTFPVTDLFLEDVLEKTRYKMNSKLD 485 (908)
Q Consensus 409 eR~~~~d~ll~~lk~~~~~~~~~qiIlmSAT~~~~~--~~~~f~~~~~-i~v~~~~~~v~~~~l~~~~~~~~~~~~~~~~ 485 (908)
|++++.|.+++.+.+...+|+.|++++|||++... ++.-....|+ +.|.++..- ..+
T Consensus 526 -rmfdmgfePq~~~Ii~nlrpdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~~~svV-----~k~-------------- 585 (997)
T KOG0334|consen 526 -RMFDMGFEPQITRILQNLRPDRQTVLFSATFPRSMEALARKVLKKPVEIIVGGRSVV-----CKE-------------- 585 (997)
T ss_pred -hhheeccCcccchHHhhcchhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEccceeE-----ecc--------------
Confidence 99999999999998888999999999999998763 2221112222 122211100 000
Q ss_pred cccccccccccccchhhhHhhhhhcccccccccchhhhhHhhHhhhhhhhhchHHHHHHHHHHHhccCCCcEEEecCCHH
Q 002552 486 SFQGNSRRSRRQDSKKDHLTALFEDVDIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICRHEGDGAILVFLTGWN 565 (908)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~~~~g~iLVF~~~~~ 565 (908)
+.+.+.... +....+..++..|......+++||||....
T Consensus 586 ------------------V~q~v~V~~-----------------------~e~eKf~kL~eLl~e~~e~~~tiiFv~~qe 624 (997)
T KOG0334|consen 586 ------------------VTQVVRVCA-----------------------IENEKFLKLLELLGERYEDGKTIIFVDKQE 624 (997)
T ss_pred ------------------ceEEEEEec-----------------------CchHHHHHHHHHHHHHhhcCCEEEEEcCch
Confidence 000000000 000113334444444445899999999999
Q ss_pred HHHHHHHHHHhcccCCCCCceEEEeccCCCChHhHHhhhCCCCCCCcEEEEeccccccccCCCCeEEEEeCCCccceeec
Q 002552 566 DISKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETSYD 645 (908)
Q Consensus 566 ~i~~l~~~L~~~~~~~~~~~~~v~~lH~~l~~~er~~v~~~f~~g~~kIlvaT~iae~GidIp~v~~VId~g~~k~~~yd 645 (908)
.++.|.+.|.+ .++.+..+||+.++.+|..+++.|++|..++||||+++++|+|++++.+||+|++|..-
T Consensus 625 ~~d~l~~~L~~-------ag~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~~l~Lvvnyd~pnh~--- 694 (997)
T KOG0334|consen 625 KADALLRDLQK-------AGYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVARGLDVKELILVVNYDFPNHY--- 694 (997)
T ss_pred HHHHHHHHHHh-------cCcchhhhcCCCchHHHHhHHHHHhccCceEEEehhhhhcccccccceEEEEcccchhH---
Confidence 99999999987 56666679999999999999999999999999999999999999999999999999833
Q ss_pred cccCccccccccccHhhHHHhccccCCC-CCcEEEEecChh
Q 002552 646 ALNKLACLLPSWISKASAHQRRGRAGRV-QPGVCYKLYPRI 685 (908)
Q Consensus 646 ~~~~~~~l~~~~iS~~~~~QR~GRaGR~-~~G~~~~l~~~~ 685 (908)
+.|+||.|||||+ +.|.||.|.+++
T Consensus 695 ---------------edyvhR~gRTgragrkg~AvtFi~p~ 720 (997)
T KOG0334|consen 695 ---------------EDYVHRVGRTGRAGRKGAAVTFITPD 720 (997)
T ss_pred ---------------HHHHHHhcccccCCccceeEEEeChH
Confidence 3899999999999 679999999984
No 53
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.5e-35 Score=312.51 Aligned_cols=331 Identities=19% Similarity=0.233 Sum_probs=227.1
Q ss_pred HHHHhhcCCCchHHHHHHHHHHHh---------CCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHH
Q 002552 273 AMLSFREKLPAFKMKAEFLKAVAE---------NQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISA 343 (908)
Q Consensus 273 ~~~~~r~~lpi~~~Q~~~i~~i~~---------~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la 343 (908)
.++........+|+|..+++.++. .+|++|.||||||||+++.+||++.+..+. -+.-+++|++|||+||
T Consensus 150 q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~-v~~LRavVivPtr~L~ 228 (620)
T KOG0350|consen 150 QLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRP-VKRLRAVVIVPTRELA 228 (620)
T ss_pred HHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCC-ccceEEEEEeeHHHHH
Confidence 344455556677899999998853 579999999999999999999998875432 2235788899999999
Q ss_pred HHHHHHHHHHhCCCCCCEEeEEeecccc------C-C----CCCcEEEEchHHHHHHHhcCC--CCCcceEEEEechhcc
Q 002552 344 ISVAARVSSERGENLGETVGYQIRLESK------R-S----AQTRLLFCTTGVLLRQLVEDP--DLSCVSHLLVDEIHER 410 (908)
Q Consensus 344 ~qi~~rv~~~~~~~~g~~vg~~~~~~~~------~-~----~~~~Iiv~T~g~Ll~~l~~~~--~l~~~~~iIiDEaHeR 410 (908)
.|++..+... ....|..|+......+. . . ...+|+|+|||+|.++|.+.+ .|+++.++|||||| |
T Consensus 229 ~QV~~~f~~~-~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVIDEAD-R 306 (620)
T KOG0350|consen 229 LQVYDTFKRL-NSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLKHLRFLVIDEAD-R 306 (620)
T ss_pred HHHHHHHHHh-ccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcchhhceEEEechHH-H
Confidence 9999988554 44456666544322111 1 1 135899999999999998765 89999999999999 7
Q ss_pred chhhHHHHH---HHHHH------------Cc-------------------cCCCCcEEEecccC--ChHHHHhhhCCCC-
Q 002552 411 GMNEDFLLI---ILRDL------------LP-------------------RRPDLRLILMSATI--NADLFSKYFGNAP- 453 (908)
Q Consensus 411 ~~~~d~ll~---~lk~~------------~~-------------------~~~~~qiIlmSAT~--~~~~~~~~f~~~~- 453 (908)
.++.-|-.. ++..+ +. ..+.+.-+.+|||+ ++..+.++=-.-|
T Consensus 307 ll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satLsqdP~Kl~~l~l~~Pr 386 (620)
T KOG0350|consen 307 LLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQDPSKLKDLTLHIPR 386 (620)
T ss_pred HHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhcchhhhcChHHHhhhhcCCCc
Confidence 666544322 22111 11 12234456667776 4445544332222
Q ss_pred ccccCCccccceeeehhhHHHhhhcccCcccccccccccccccccchhhhHhhhhhcccccccccchhhhhHhhHhhhhh
Q 002552 454 TVHIPGLTFPVTDLFLEDVLEKTRYKMNSKLDSFQGNSRRSRRQDSKKDHLTALFEDVDIDSNYKNYRASTRASLEAWSA 533 (908)
Q Consensus 454 ~i~v~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 (908)
.+.+.+. ... .|..... +....-.
T Consensus 387 l~~v~~~---~~~----------ryslp~~--------------------l~~~~vv----------------------- 410 (620)
T KOG0350|consen 387 LFHVSKP---LIG----------RYSLPSS--------------------LSHRLVV----------------------- 410 (620)
T ss_pred eEEeecc---cce----------eeecChh--------------------hhhceee-----------------------
Confidence 2222110 000 0111000 0000000
Q ss_pred hhhchHHHHHHHHHHHhccCCCcEEEecCCHHHHHHHHHHHH-hcccCCCCCceEEEeccCCCChHhHHhhhCCCCCCCc
Q 002552 534 EQIDLGLVESTIEYICRHEGDGAILVFLTGWNDISKLLDQIK-VNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKR 612 (908)
Q Consensus 534 ~~~~~~li~~~l~~i~~~~~~g~iLVF~~~~~~i~~l~~~L~-~~~~~~~~~~~~v~~lH~~l~~~er~~v~~~f~~g~~ 612 (908)
.+..+....+.++.......++|+|+++...+..++..|. ... ...+.+-.+.|++....|.+.++.|..|.+
T Consensus 411 --~~~~~kpl~~~~lI~~~k~~r~lcf~~S~~sa~Rl~~~L~v~~~----~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i 484 (620)
T KOG0350|consen 411 --TEPKFKPLAVYALITSNKLNRTLCFVNSVSSANRLAHVLKVEFC----SDNFKVSEFTGQLNGKRRYKMLEKFAKGDI 484 (620)
T ss_pred --cccccchHhHHHHHHHhhcceEEEEecchHHHHHHHHHHHHHhc----cccchhhhhhhhhhHHHHHHHHHHHhcCCc
Confidence 0000011223333344556789999999999999999887 211 145566669999999999999999999999
Q ss_pred EEEEeccccccccCCCCeEEEEeCCCccceeeccccCccccccccccHhhHHHhccccCCC-CCcEEEEecChhh
Q 002552 613 KIVLATNIAESSITIDDVVYVVDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRV-QPGVCYKLYPRII 686 (908)
Q Consensus 613 kIlvaT~iae~GidIp~v~~VId~g~~k~~~yd~~~~~~~l~~~~iS~~~~~QR~GRaGR~-~~G~~~~l~~~~~ 686 (908)
+||||||+++||||+.+|+.||||++|. |.-.|+||+||++|+ +.|.||.|.++..
T Consensus 485 ~vLIcSD~laRGiDv~~v~~VINYd~P~------------------~~ktyVHR~GRTARAgq~G~a~tll~~~~ 541 (620)
T KOG0350|consen 485 NVLICSDALARGIDVNDVDNVINYDPPA------------------SDKTYVHRAGRTARAGQDGYAITLLDKHE 541 (620)
T ss_pred eEEEehhhhhcCCcccccceEeecCCCc------------------hhhHHHHhhcccccccCCceEEEeecccc
Confidence 9999999999999999999999999998 555999999999999 7899999998753
No 54
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.2e-35 Score=308.06 Aligned_cols=335 Identities=18% Similarity=0.157 Sum_probs=244.9
Q ss_pred HHHHhccChhHHHHHHhhcCCCchHHHHHHHHHHHhCCeEEEEecCCCCccchHHHHHHHHHHhccC----CCCcEEEEE
Q 002552 261 RQEKLKSSDSGKAMLSFREKLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLR----GADCNIICT 336 (908)
Q Consensus 261 ~~~~~~~~~~~~~~~~~r~~lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~----~~~~~ilv~ 336 (908)
.++.+..++++.+.......-.++-+|+.+|+.+++|+|++..|.||||||.++.+|+++.++.... ...+..+++
T Consensus 20 tFe~~gLD~RllkAi~~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~iL 99 (569)
T KOG0346|consen 20 TFEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVIL 99 (569)
T ss_pred cHHHhCCCHHHHHHHHHhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEEE
Confidence 3445566666666666666667788999999999999999999999999999999999999875432 235678888
Q ss_pred cccHHHHHHHHHHHHHHhCC---CC-CCEEeEEeec---cccCCCCCcEEEEchHHHHHHHhcCC--CCCcceEEEEech
Q 002552 337 QPRRISAISVAARVSSERGE---NL-GETVGYQIRL---ESKRSAQTRLLFCTTGVLLRQLVEDP--DLSCVSHLLVDEI 407 (908)
Q Consensus 337 ~P~r~la~qi~~rv~~~~~~---~~-g~~vg~~~~~---~~~~~~~~~Iiv~T~g~Ll~~l~~~~--~l~~~~~iIiDEa 407 (908)
+|||+||.|++..+.+.... .+ ...+...... .......++|+|+||+.|++++..+. .++.++++|+|||
T Consensus 100 vPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDEA 179 (569)
T KOG0346|consen 100 VPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDEA 179 (569)
T ss_pred echHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEechh
Confidence 89999999999877654211 00 0000000000 01223478999999999999999887 6899999999999
Q ss_pred hccchhhHHHHHHHHHHCccCCCCcEEEecccCChH--HHHhhhCCCCcc-ccCCccccc----eeeehhhHHHhhhccc
Q 002552 408 HERGMNEDFLLIILRDLLPRRPDLRLILMSATINAD--LFSKYFGNAPTV-HIPGLTFPV----TDLFLEDVLEKTRYKM 480 (908)
Q Consensus 408 HeR~~~~d~ll~~lk~~~~~~~~~qiIlmSAT~~~~--~~~~~f~~~~~i-~v~~~~~~v----~~~~l~~~~~~~~~~~ 480 (908)
| ..+.-++...+.+......+..|.++||||++.+ .+.+.|-..|++ .+.....|. ..+++.
T Consensus 180 D-LllsfGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~---------- 248 (569)
T KOG0346|consen 180 D-LLLSFGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVK---------- 248 (569)
T ss_pred h-hhhhcccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCCeEEEeccccCCCcccceEEEEE----------
Confidence 9 4455555555555555566789999999999655 467777655543 332222221 111110
Q ss_pred CcccccccccccccccccchhhhHhhhhhcccccccccchhhhhHhhHhhhhhhhhchHHHHHHHHHHHhccCCCcEEEe
Q 002552 481 NSKLDSFQGNSRRSRRQDSKKDHLTALFEDVDIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICRHEGDGAILVF 560 (908)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~~~~g~iLVF 560 (908)
. +..|.+ -++..++. -..-.|++|||
T Consensus 249 ----------------c-se~DKf----------------------------------lllyallK---L~LI~gKsliF 274 (569)
T KOG0346|consen 249 ----------------C-SEEDKF----------------------------------LLLYALLK---LRLIRGKSLIF 274 (569)
T ss_pred ----------------e-ccchhH----------------------------------HHHHHHHH---HHHhcCceEEE
Confidence 0 000110 01111111 12346899999
Q ss_pred cCCHHHHHHHHHHHHhcccCCCCCceEEEeccCCCChHhHHhhhCCCCCCCcEEEEecc---------------------
Q 002552 561 LTGWNDISKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATN--------------------- 619 (908)
Q Consensus 561 ~~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lH~~l~~~er~~v~~~f~~g~~kIlvaT~--------------------- 619 (908)
+++.+.+..|.-.|.. -++..+.+.|.||..-|..|++.|..|...||||||
T Consensus 275 VNtIdr~YrLkLfLeq-------FGiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee~kgk~~e~~~ 347 (569)
T KOG0346|consen 275 VNTIDRCYRLKLFLEQ-------FGIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEEVKGKSDEKNP 347 (569)
T ss_pred EechhhhHHHHHHHHH-------hCcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhhccccccccccCC
Confidence 9999999999888887 566777899999999999999999999999999999
Q ss_pred --------------ccccccCCCCeEEEEeCCCccceeeccccCccccccccccHhhHHHhccccCCC-CCcEEEEecCh
Q 002552 620 --------------IAESSITIDDVVYVVDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRV-QPGVCYKLYPR 684 (908)
Q Consensus 620 --------------iae~GidIp~v~~VId~g~~k~~~yd~~~~~~~l~~~~iS~~~~~QR~GRaGR~-~~G~~~~l~~~ 684 (908)
-.+||||+..|..|||||+|. +..+|+||+|||+|. .+|.+..|...
T Consensus 348 kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~------------------t~~sYIHRvGRTaRg~n~GtalSfv~P 409 (569)
T KOG0346|consen 348 KNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPE------------------TVTSYIHRVGRTARGNNKGTALSFVSP 409 (569)
T ss_pred CCccccccccCchhchhccccchheeeeeecCCCC------------------chHHHHHhccccccCCCCCceEEEecc
Confidence 236899999999999999999 444999999999999 88999999876
Q ss_pred h
Q 002552 685 I 685 (908)
Q Consensus 685 ~ 685 (908)
.
T Consensus 410 ~ 410 (569)
T KOG0346|consen 410 K 410 (569)
T ss_pred h
Confidence 4
No 55
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=6.8e-34 Score=339.02 Aligned_cols=303 Identities=18% Similarity=0.188 Sum_probs=214.7
Q ss_pred CchHHHHHHHHHHHhCCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCCE
Q 002552 282 PAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLGET 361 (908)
Q Consensus 282 pi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~~~~~~~g~~ 361 (908)
...++|.++++++++++++++++|||+|||+++.++++.. ...++|+.|+++|+.|..+++.. ++. .
T Consensus 13 ~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~--------~g~~lVisPl~sL~~dq~~~l~~-~gi----~ 79 (591)
T TIGR01389 13 DFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLL--------KGLTVVISPLISLMKDQVDQLRA-AGV----A 79 (591)
T ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHc--------CCcEEEEcCCHHHHHHHHHHHHH-cCC----c
Confidence 3567999999999999999999999999999988887642 23678889999999999888865 333 2
Q ss_pred EeEEeec---c-------ccCCCCCcEEEEchHHHHHHHhc-CCCCCcceEEEEechhccc-hhhHHHHHH--HHHHCcc
Q 002552 362 VGYQIRL---E-------SKRSAQTRLLFCTTGVLLRQLVE-DPDLSCVSHLLVDEIHERG-MNEDFLLII--LRDLLPR 427 (908)
Q Consensus 362 vg~~~~~---~-------~~~~~~~~Iiv~T~g~Ll~~l~~-~~~l~~~~~iIiDEaHeR~-~~~d~ll~~--lk~~~~~ 427 (908)
+.+.... . .......+|+|+||++|...... .....++++|||||||+.. ...||-..+ +..+...
T Consensus 80 ~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp~y~~l~~l~~~ 159 (591)
T TIGR01389 80 AAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRPEYQRLGSLAER 159 (591)
T ss_pred EEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHHHHHHHHHHHHh
Confidence 3322111 0 11234678999999998643222 2245789999999999643 123343322 2333444
Q ss_pred CCCCcEEEecccCChHH---HHhhhCCC-CccccCCccccceeeehhhHHHhhhcccCcccccccccccccccccchhhh
Q 002552 428 RPDLRLILMSATINADL---FSKYFGNA-PTVHIPGLTFPVTDLFLEDVLEKTRYKMNSKLDSFQGNSRRSRRQDSKKDH 503 (908)
Q Consensus 428 ~~~~qiIlmSAT~~~~~---~~~~f~~~-~~i~v~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (908)
.|+..+|++|||++... +.++++-. +...+.+...| ...|. .. ...
T Consensus 160 ~~~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~-nl~~~----------v~-----------------~~~-- 209 (591)
T TIGR01389 160 FPQVPRIALTATADAETRQDIRELLRLADANEFITSFDRP-NLRFS----------VV-----------------KKN-- 209 (591)
T ss_pred CCCCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEecCCCCC-CcEEE----------EE-----------------eCC--
Confidence 56667999999997664 34444321 11111000000 00000 00 000
Q ss_pred HhhhhhcccccccccchhhhhHhhHhhhhhhhhchHHHHHHHHHHHhccCCCcEEEecCCHHHHHHHHHHHHhcccCCCC
Q 002552 504 LTALFEDVDIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICRHEGDGAILVFLTGWNDISKLLDQIKVNKFLGDP 583 (908)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~~~~ 583 (908)
.....++..+. ...+.++||||+++++++.+++.|..
T Consensus 210 -----------------------------------~~~~~l~~~l~-~~~~~~~IIf~~sr~~~e~la~~L~~------- 246 (591)
T TIGR01389 210 -----------------------------------NKQKFLLDYLK-KHRGQSGIIYASSRKKVEELAERLES------- 246 (591)
T ss_pred -----------------------------------CHHHHHHHHHH-hcCCCCEEEEECcHHHHHHHHHHHHh-------
Confidence 00111222222 23367899999999999999999987
Q ss_pred CceEEEeccCCCChHhHHhhhCCCCCCCcEEEEeccccccccCCCCeEEEEeCCCccceeeccccCccccccccccHhhH
Q 002552 584 NKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETSYDALNKLACLLPSWISKASA 663 (908)
Q Consensus 584 ~~~~v~~lH~~l~~~er~~v~~~f~~g~~kIlvaT~iae~GidIp~v~~VId~g~~k~~~yd~~~~~~~l~~~~iS~~~~ 663 (908)
.++.+.++||+|++++|+.+++.|..|..+|||||+++++|||+|+|++||++++|+ |.++|
T Consensus 247 ~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~~~~p~------------------s~~~y 308 (591)
T TIGR01389 247 QGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHYDMPG------------------NLESY 308 (591)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEEcCCCC------------------CHHHH
Confidence 466788999999999999999999999999999999999999999999999999999 77799
Q ss_pred HHhccccCCC-CCcEEEEecChhhHh
Q 002552 664 HQRRGRAGRV-QPGVCYKLYPRIIHD 688 (908)
Q Consensus 664 ~QR~GRaGR~-~~G~~~~l~~~~~~~ 688 (908)
+||+|||||. .+|.|+.+|+..++.
T Consensus 309 ~Q~~GRaGR~G~~~~~il~~~~~d~~ 334 (591)
T TIGR01389 309 YQEAGRAGRDGLPAEAILLYSPADIA 334 (591)
T ss_pred hhhhccccCCCCCceEEEecCHHHHH
Confidence 9999999999 689999999987653
No 56
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=1.6e-33 Score=329.67 Aligned_cols=385 Identities=20% Similarity=0.198 Sum_probs=266.6
Q ss_pred hHHHHHHhhcCCCchHHHHHHHHHHHhCCeEEEEecCCCCccchHHHHHHHHHHhccCC---CCcEEEEEcccHHHHHHH
Q 002552 270 SGKAMLSFREKLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRG---ADCNIICTQPRRISAISV 346 (908)
Q Consensus 270 ~~~~~~~~r~~lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~---~~~~ilv~~P~r~la~qi 346 (908)
...+.++.+ .-.+++.|.++|+.|.+|++++|+||||||||.++.++++..+.....+ .+..+|++.|.|+|+..+
T Consensus 11 ~v~~~~~~~-~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn~Di 89 (814)
T COG1201 11 RVREWFKRK-FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALNNDI 89 (814)
T ss_pred HHHHHHHHh-cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHHHHH
Confidence 344444444 5567889999999999999999999999999999999999998876322 346899999999999999
Q ss_pred HHHHHHHhCCCCCCEEe----EEeeccc--cCCCCCcEEEEchHHHHHHHhcCC---CCCcceEEEEechhc-----cch
Q 002552 347 AARVSSERGENLGETVG----YQIRLES--KRSAQTRLLFCTTGVLLRQLVEDP---DLSCVSHLLVDEIHE-----RGM 412 (908)
Q Consensus 347 ~~rv~~~~~~~~g~~vg----~~~~~~~--~~~~~~~Iiv~T~g~Ll~~l~~~~---~l~~~~~iIiDEaHe-----R~~ 412 (908)
-.++..- +...|..|. .....+. .....++|+++||+.|.-+|.... .|.++.+|||||+|+ |+.
T Consensus 90 ~~rL~~~-~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~sKRG~ 168 (814)
T COG1201 90 RRRLEEP-LRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAESKRGV 168 (814)
T ss_pred HHHHHHH-HHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhccccch
Confidence 9888543 334455442 1111111 123468999999999988776643 799999999999996 777
Q ss_pred hhHHHHHHHHHHCccCCCCcEEEecccC-ChHHHHhhhCCC----CccccCCc-cccceeeehhhHHHhhhcccCccccc
Q 002552 413 NEDFLLIILRDLLPRRPDLRLILMSATI-NADLFSKYFGNA----PTVHIPGL-TFPVTDLFLEDVLEKTRYKMNSKLDS 486 (908)
Q Consensus 413 ~~d~ll~~lk~~~~~~~~~qiIlmSAT~-~~~~~~~~f~~~----~~i~v~~~-~~~v~~~~l~~~~~~~~~~~~~~~~~ 486 (908)
..-+.+..++.+.. ++|.|++|||+ +.+..++|+... .++.+.+. ...+.+.....-.. .
T Consensus 169 ~Lsl~LeRL~~l~~---~~qRIGLSATV~~~~~varfL~g~~~~~~Iv~~~~~k~~~i~v~~p~~~~~-----------~ 234 (814)
T COG1201 169 QLALSLERLRELAG---DFQRIGLSATVGPPEEVAKFLVGFGDPCEIVDVSAAKKLEIKVISPVEDLI-----------Y 234 (814)
T ss_pred hhhhhHHHHHhhCc---ccEEEeehhccCCHHHHHHHhcCCCCceEEEEcccCCcceEEEEecCCccc-----------c
Confidence 66666666666554 89999999999 777899998654 23333221 11222211110000 0
Q ss_pred ccccccccccccchhhhHhhhhhcccccccccchhhhhHhhHhhhhhhhhchHHHHHHHHHHHhccCCCcEEEecCCHHH
Q 002552 487 FQGNSRRSRRQDSKKDHLTALFEDVDIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICRHEGDGAILVFLTGWND 566 (908)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~~~~g~iLVF~~~~~~ 566 (908)
. + .........+..+.++ ...+|||+||+..
T Consensus 235 ------------~--~---------------------------------~~~~~~~~~i~~~v~~--~~ttLIF~NTR~~ 265 (814)
T COG1201 235 ------------D--E---------------------------------ELWAALYERIAELVKK--HRTTLIFTNTRSG 265 (814)
T ss_pred ------------c--c---------------------------------chhHHHHHHHHHHHhh--cCcEEEEEeChHH
Confidence 0 0 0000122233333332 3479999999999
Q ss_pred HHHHHHHHHhcccCCCCCceEEEeccCCCChHhHHhhhCCCCCCCcEEEEeccccccccCCCCeEEEEeCCCccceeecc
Q 002552 567 ISKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETSYDA 646 (908)
Q Consensus 567 i~~l~~~L~~~~~~~~~~~~~v~~lH~~l~~~er~~v~~~f~~g~~kIlvaT~iae~GidIp~v~~VId~g~~k~~~yd~ 646 (908)
++.++..|.+.. ...+..|||+++.++|..+++.|++|..+++|||+.+|-||||.+|+.||+++-|+
T Consensus 266 aE~l~~~L~~~~------~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGIDiG~vdlVIq~~SP~------ 333 (814)
T COG1201 266 AERLAFRLKKLG------PDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGIDIGDIDLVIQLGSPK------ 333 (814)
T ss_pred HHHHHHHHHHhc------CCceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhccccCCceEEEEeCCcH------
Confidence 999999998742 26788999999999999999999999999999999999999999999999999999
Q ss_pred ccCccccccccccHhhHHHhccccCCC----CCcEEEEecChhhHhh-------c-CCCCCCccccCchHHHHHHHhhcC
Q 002552 647 LNKLACLLPSWISKASAHQRRGRAGRV----QPGVCYKLYPRIIHDA-------M-LPYQLPEILRTPLQELCLHIKSLQ 714 (908)
Q Consensus 647 ~~~~~~l~~~~iS~~~~~QR~GRaGR~----~~G~~~~l~~~~~~~~-------l-~~~~~pei~r~~L~~~~L~~~~l~ 714 (908)
|.+.+.||+||+|+. ..|..|..-..+..+. + -....+++...+|+-+.-++-.+-
T Consensus 334 ------------sV~r~lQRiGRsgHr~~~~Skg~ii~~~r~dllE~~vi~~~a~~g~le~~~i~~~~LDVLaq~ivg~~ 401 (814)
T COG1201 334 ------------SVNRFLQRIGRAGHRLGEVSKGIIIAEDRDDLLECLVLADLALEGKLERIKIPKNPLDVLAQQIVGMA 401 (814)
T ss_pred ------------HHHHHhHhccccccccCCcccEEEEecCHHHHHHHHHHHHHHHhCCcccCCCCCcchhHHHHHHHHHH
Confidence 777999999999997 3354444432121121 1 112346666778876666654332
Q ss_pred C------CchhhhhhccC--CCCCHHHHHHHHHHHHH
Q 002552 715 L------GTVGSFLSKAL--QPPDPLAVQNAIELLKT 743 (908)
Q Consensus 715 ~------~~~~~fl~~~~--~~p~~~~v~~al~~L~~ 743 (908)
+ ....+++..+- .--+.+.....++.|..
T Consensus 402 ~~~~~~~~~~y~~vrraypy~~L~~e~f~~v~~~l~~ 438 (814)
T COG1201 402 LEKVWEVEEAYRVVRRAYPYADLSREDFRLVLRYLAG 438 (814)
T ss_pred hhCcCCHHHHHHHHHhccccccCCHHHHHHHHHHHhh
Confidence 2 22222222211 11255677788888877
No 57
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=1.6e-33 Score=349.45 Aligned_cols=313 Identities=20% Similarity=0.231 Sum_probs=205.0
Q ss_pred EEecCCCCccchHHHHHHHHHHhcc--------CCCCcEEEEEcccHHHHHHHHHHHHHHh----------C-CCCCCEE
Q 002552 302 VSGETGCGKTTQLPQFILEEELSSL--------RGADCNIICTQPRRISAISVAARVSSER----------G-ENLGETV 362 (908)
Q Consensus 302 i~a~TGSGKTt~~~~~il~~~~~~~--------~~~~~~ilv~~P~r~la~qi~~rv~~~~----------~-~~~g~~v 362 (908)
|+||||||||+++.+++++.++.+. ...++++||+.|+|+|+.|+.+++...+ + ...+..|
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 5899999999999999999887542 1235789999999999999998875421 1 1234555
Q ss_pred eEEeeccc------cCCCCCcEEEEchHHHHHHHhcCC--CCCcceEEEEechhc-----cchhhHHHHHHHHHHCccCC
Q 002552 363 GYQIRLES------KRSAQTRLLFCTTGVLLRQLVEDP--DLSCVSHLLVDEIHE-----RGMNEDFLLIILRDLLPRRP 429 (908)
Q Consensus 363 g~~~~~~~------~~~~~~~Iiv~T~g~Ll~~l~~~~--~l~~~~~iIiDEaHe-----R~~~~d~ll~~lk~~~~~~~ 429 (908)
+....... .....++|+|+||+.|..+|.+.. .|+++++|||||+|+ |+......+..++.+. ..
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~--~~ 158 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALL--HT 158 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhC--CC
Confidence 54332211 122468999999999998876543 799999999999995 3333333444444443 34
Q ss_pred CCcEEEecccC-ChHHHHhhhCCC-Ccccc-CC--ccccceeeeh-hhHHHhhhcccCcccccccccccccccccchhhh
Q 002552 430 DLRLILMSATI-NADLFSKYFGNA-PTVHI-PG--LTFPVTDLFL-EDVLEKTRYKMNSKLDSFQGNSRRSRRQDSKKDH 503 (908)
Q Consensus 430 ~~qiIlmSAT~-~~~~~~~~f~~~-~~i~v-~~--~~~~v~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (908)
++|+|++|||+ |.+.+++|++.. ++..+ +. +..++..... .+. ..+. ..........
T Consensus 159 ~~QrIgLSATI~n~eevA~~L~g~~pv~Iv~~~~~r~~~l~v~vp~~d~------------~~~~----~~~~~~~~~~- 221 (1490)
T PRK09751 159 SAQRIGLSATVRSASDVAAFLGGDRPVTVVNPPAMRHPQIRIVVPVANM------------DDVS----SVASGTGEDS- 221 (1490)
T ss_pred CCeEEEEEeeCCCHHHHHHHhcCCCCEEEECCCCCcccceEEEEecCch------------hhcc----cccccccccc-
Confidence 68999999999 567788999753 32111 11 1122221110 000 0000 0000000000
Q ss_pred HhhhhhcccccccccchhhhhHhhHhhhhhhhhchHHHHHHHHHHHhccCCCcEEEecCCHHHHHHHHHHHHhcccC---
Q 002552 504 LTALFEDVDIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICRHEGDGAILVFLTGWNDISKLLDQIKVNKFL--- 580 (908)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~--- 580 (908)
.. .+ . ..+.......++..+. ...++||||+|++.++.++..|.+....
T Consensus 222 ----------------~~--~r--~-----~~i~~~v~~~il~~i~---~~~stLVFvNSR~~AE~La~~L~~~~~~~~~ 273 (1490)
T PRK09751 222 ----------------HA--GR--E-----GSIWPYIETGILDEVL---RHRSTIVFTNSRGLAEKLTARLNELYAARLQ 273 (1490)
T ss_pred ----------------ch--hh--h-----hhhhHHHHHHHHHHHh---cCCCEEEECCCHHHHHHHHHHHHHhhhhhcc
Confidence 00 00 0 0000000112222222 3568999999999999999988753100
Q ss_pred ----------------C-------CCCceEEEeccCCCChHhHHhhhCCCCCCCcEEEEeccccccccCCCCeEEEEeCC
Q 002552 581 ----------------G-------DPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDCG 637 (908)
Q Consensus 581 ----------------~-------~~~~~~v~~lH~~l~~~er~~v~~~f~~g~~kIlvaT~iae~GidIp~v~~VId~g 637 (908)
+ ....+.+.+|||+|++++|..+++.|++|+++|||||+++|+||||++|++||++|
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~g 353 (1490)
T PRK09751 274 RSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVA 353 (1490)
T ss_pred ccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHHHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeC
Confidence 0 00124478899999999999999999999999999999999999999999999999
Q ss_pred CccceeeccccCccccccccccHhhHHHhccccCCCCC--cEEE
Q 002552 638 KAKETSYDALNKLACLLPSWISKASAHQRRGRAGRVQP--GVCY 679 (908)
Q Consensus 638 ~~k~~~yd~~~~~~~l~~~~iS~~~~~QR~GRaGR~~~--G~~~ 679 (908)
.|+ |.++|+||+|||||... +.++
T Consensus 354 sP~------------------sVas~LQRiGRAGR~~gg~s~gl 379 (1490)
T PRK09751 354 TPL------------------SVASGLQRIGRAGHQVGGVSKGL 379 (1490)
T ss_pred CCC------------------CHHHHHHHhCCCCCCCCCccEEE
Confidence 998 78899999999999833 4455
No 58
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=5.6e-33 Score=336.94 Aligned_cols=301 Identities=20% Similarity=0.248 Sum_probs=214.9
Q ss_pred hcCCCchHHHHHHHHHHHhC------CeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHH
Q 002552 278 REKLPAFKMKAEFLKAVAEN------QVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVS 351 (908)
Q Consensus 278 r~~lpi~~~Q~~~i~~i~~~------~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~ 351 (908)
.-...+++.|.++|+.+.++ .+.+++|+||||||.++..+++..+.. ++++++++||++||.|+++.+.
T Consensus 447 ~~~f~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~-----g~qvlvLvPT~~LA~Q~~~~f~ 521 (926)
T TIGR00580 447 SFPFEETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLD-----GKQVAVLVPTTLLAQQHFETFK 521 (926)
T ss_pred hCCCCCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHh-----CCeEEEEeCcHHHHHHHHHHHH
Confidence 33456789999999999875 689999999999999998888876542 3579999999999999999998
Q ss_pred HHhCCCCCCEEeEEeeccc----------cCCCCCcEEEEchHHHHHHHhcCCCCCcceEEEEechhccchhhHHHHHHH
Q 002552 352 SERGENLGETVGYQIRLES----------KRSAQTRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIIL 421 (908)
Q Consensus 352 ~~~~~~~g~~vg~~~~~~~----------~~~~~~~Iiv~T~g~Ll~~l~~~~~l~~~~~iIiDEaHeR~~~~d~ll~~l 421 (908)
+.+.. .+..++.-.+... ......+|+|+||.. +..+..+.++++|||||+|+.+... .
T Consensus 522 ~~~~~-~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~l----l~~~v~f~~L~llVIDEahrfgv~~------~ 590 (926)
T TIGR00580 522 ERFAN-FPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKL----LQKDVKFKDLGLLIIDEEQRFGVKQ------K 590 (926)
T ss_pred HHhcc-CCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHH----hhCCCCcccCCEEEeecccccchhH------H
Confidence 76543 3333433222111 012357999999943 3334478999999999999533221 2
Q ss_pred HHHCccCCCCcEEEecccCChHHHHhh-hC--CCCccccC-CccccceeeehhhHHHhhhcccCcccccccccccccccc
Q 002552 422 RDLLPRRPDLRLILMSATINADLFSKY-FG--NAPTVHIP-GLTFPVTDLFLEDVLEKTRYKMNSKLDSFQGNSRRSRRQ 497 (908)
Q Consensus 422 k~~~~~~~~~qiIlmSAT~~~~~~~~~-f~--~~~~i~v~-~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (908)
..+....++.++++||||+.+..+... ++ +..++..+ ....|+..++.+.
T Consensus 591 ~~L~~~~~~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~~R~~V~t~v~~~-------------------------- 644 (926)
T TIGR00580 591 EKLKELRTSVDVLTLSATPIPRTLHMSMSGIRDLSIIATPPEDRLPVRTFVMEY-------------------------- 644 (926)
T ss_pred HHHHhcCCCCCEEEEecCCCHHHHHHHHhcCCCcEEEecCCCCccceEEEEEec--------------------------
Confidence 222334567899999999866654322 22 11122211 1112232221100
Q ss_pred cchhhhHhhhhhcccccccccchhhhhHhhHhhhhhhhhchHHHH-HHHHHHHhccCCCcEEEecCCHHHHHHHHHHHHh
Q 002552 498 DSKKDHLTALFEDVDIDSNYKNYRASTRASLEAWSAEQIDLGLVE-STIEYICRHEGDGAILVFLTGWNDISKLLDQIKV 576 (908)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~-~~l~~i~~~~~~g~iLVF~~~~~~i~~l~~~L~~ 576 (908)
+...+. .+...+ ..+++++||+++.++++.+++.|..
T Consensus 645 ---------------------------------------~~~~i~~~i~~el---~~g~qv~if~n~i~~~e~l~~~L~~ 682 (926)
T TIGR00580 645 ---------------------------------------DPELVREAIRREL---LRGGQVFYVHNRIESIEKLATQLRE 682 (926)
T ss_pred ---------------------------------------CHHHHHHHHHHHH---HcCCeEEEEECCcHHHHHHHHHHHH
Confidence 000011 122222 2467899999999999999999986
Q ss_pred cccCCCCCceEEEeccCCCChHhHHhhhCCCCCCCcEEEEeccccccccCCCCeEEEEeCCCccceeeccccCccccccc
Q 002552 577 NKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETSYDALNKLACLLPS 656 (908)
Q Consensus 577 ~~~~~~~~~~~v~~lH~~l~~~er~~v~~~f~~g~~kIlvaT~iae~GidIp~v~~VId~g~~k~~~yd~~~~~~~l~~~ 656 (908)
.. .++.|..+||+|++++|+++++.|++|+.+|||||+++|+|||||++++||.++.+. |
T Consensus 683 ~~-----p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~VIi~~a~~---~------------ 742 (926)
T TIGR00580 683 LV-----PEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANTIIIERADK---F------------ 742 (926)
T ss_pred hC-----CCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCCEEEEecCCC---C------------
Confidence 31 357899999999999999999999999999999999999999999999999877665 1
Q ss_pred cccHhhHHHhccccCCC-CCcEEEEecCh
Q 002552 657 WISKASAHQRRGRAGRV-QPGVCYKLYPR 684 (908)
Q Consensus 657 ~iS~~~~~QR~GRaGR~-~~G~~~~l~~~ 684 (908)
+.++|.||+||+||. +.|.||.|++.
T Consensus 743 --gls~l~Qr~GRvGR~g~~g~aill~~~ 769 (926)
T TIGR00580 743 --GLAQLYQLRGRVGRSKKKAYAYLLYPH 769 (926)
T ss_pred --CHHHHHHHhcCCCCCCCCeEEEEEECC
Confidence 345899999999999 78999999975
No 59
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.1e-34 Score=311.26 Aligned_cols=322 Identities=18% Similarity=0.182 Sum_probs=230.5
Q ss_pred CCCchHHHHHHHHHHHhCCeEEEEecCCCCccchHHHHHHHHHHhccC---CCCcEEEEEcccHHHHHHHHHHHHHHhCC
Q 002552 280 KLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLR---GADCNIICTQPRRISAISVAARVSSERGE 356 (908)
Q Consensus 280 ~lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~---~~~~~ilv~~P~r~la~qi~~rv~~~~~~ 356 (908)
.--++++|.++++.++++++++.|||||||||+++.++|+.++..... ..+-+++|+.|+|+||.|+++.+.+....
T Consensus 156 F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~~gl~a~Il~ptreLa~Qi~re~~k~~~~ 235 (593)
T KOG0344|consen 156 FDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQEKHKVGLRALILSPTRELAAQIYREMRKYSID 235 (593)
T ss_pred CCCCCcccchhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhcccCccceEEEEecchHHHHHHHHHHHHhcCCC
Confidence 334456899999999999999999999999999999999998765432 34568899999999999999988765411
Q ss_pred --CCCCEEeEEe------eccccCCCCCcEEEEchHHHHHHHhcCC---CCCcceEEEEechhccchhh-HHHHHHHHHH
Q 002552 357 --NLGETVGYQI------RLESKRSAQTRLLFCTTGVLLRQLVEDP---DLSCVSHLLVDEIHERGMNE-DFLLIILRDL 424 (908)
Q Consensus 357 --~~g~~vg~~~------~~~~~~~~~~~Iiv~T~g~Ll~~l~~~~---~l~~~~~iIiDEaHeR~~~~-d~ll~~lk~~ 424 (908)
......+... +........++|++.||-++...+..++ .+..+.++|+||+| +-+.- .|..++-..+
T Consensus 236 ~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD-~lfe~~~f~~Qla~I~ 314 (593)
T KOG0344|consen 236 EGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEAD-LLFEPEFFVEQLADIY 314 (593)
T ss_pred CCCchhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCccchhheeeeEeechHH-hhhChhhHHHHHHHHH
Confidence 1111111110 1111112367899999999999998876 79999999999999 54444 4554444333
Q ss_pred Cc-cCCCCcEEEecccCChH--HHHhhhCCCCc-cccCCccccceeeehhhHHHhhhcccCcccccccccccccccccch
Q 002552 425 LP-RRPDLRLILMSATINAD--LFSKYFGNAPT-VHIPGLTFPVTDLFLEDVLEKTRYKMNSKLDSFQGNSRRSRRQDSK 500 (908)
Q Consensus 425 ~~-~~~~~qiIlmSAT~~~~--~~~~~f~~~~~-i~v~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (908)
.. ..|++++=++|||++.. .+++.....++ +.|.-+... .+.+.+...+ .+.
T Consensus 315 sac~s~~i~~a~FSat~~~~VEE~~~~i~~~~~~vivg~~~sa-----~~~V~QelvF---------~gs---------- 370 (593)
T KOG0344|consen 315 SACQSPDIRVALFSATISVYVEEWAELIKSDLKRVIVGLRNSA-----NETVDQELVF---------CGS---------- 370 (593)
T ss_pred HHhcCcchhhhhhhccccHHHHHHHHHhhccceeEEEecchhH-----hhhhhhhhee---------eec----------
Confidence 22 44789999999998644 34433322221 111110000 0000000000 000
Q ss_pred hhhHhhhhhcccccccccchhhhhHhhHhhhhhhhhchHHHHHHHHHHHhccCCCcEEEecCCHHHHHHHHHHHHhcccC
Q 002552 501 KDHLTALFEDVDIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICRHEGDGAILVFLTGWNDISKLLDQIKVNKFL 580 (908)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~ 580 (908)
..-....+..+....-..++|||+.+.+.+..|.+.|..
T Consensus 371 -------------------------------------e~~K~lA~rq~v~~g~~PP~lIfVQs~eRak~L~~~L~~---- 409 (593)
T KOG0344|consen 371 -------------------------------------EKGKLLALRQLVASGFKPPVLIFVQSKERAKQLFEELEI---- 409 (593)
T ss_pred -------------------------------------chhHHHHHHHHHhccCCCCeEEEEecHHHHHHHHHHhhh----
Confidence 000112333444444567899999999999999998852
Q ss_pred CCCCceEEEeccCCCChHhHHhhhCCCCCCCcEEEEeccccccccCCCCeEEEEeCCCccceeeccccCccccccccccH
Q 002552 581 GDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETSYDALNKLACLLPSWISK 660 (908)
Q Consensus 581 ~~~~~~~v~~lH~~l~~~er~~v~~~f~~g~~kIlvaT~iae~GidIp~v~~VId~g~~k~~~yd~~~~~~~l~~~~iS~ 660 (908)
..++.|..+||..++.+|+++++.|+.|++.||+||++++||||+-+|+.|||+|+|. |.
T Consensus 410 --~~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicTdll~RGiDf~gvn~VInyD~p~------------------s~ 469 (593)
T KOG0344|consen 410 --YDNINVDVIHGERSQKQRDETMERFRIGKIWVLICTDLLARGIDFKGVNLVINYDFPQ------------------SD 469 (593)
T ss_pred --ccCcceeeEecccchhHHHHHHHHHhccCeeEEEehhhhhccccccCcceEEecCCCc------------------hh
Confidence 1677899999999999999999999999999999999999999999999999999999 66
Q ss_pred hhHHHhccccCCC-CCcEEEEecChhhH
Q 002552 661 ASAHQRRGRAGRV-QPGVCYKLYPRIIH 687 (908)
Q Consensus 661 ~~~~QR~GRaGR~-~~G~~~~l~~~~~~ 687 (908)
.+|+||+||+||+ +.|++|.||+.++.
T Consensus 470 ~syihrIGRtgRag~~g~Aitfytd~d~ 497 (593)
T KOG0344|consen 470 LSYIHRIGRTGRAGRSGKAITFYTDQDM 497 (593)
T ss_pred HHHHHHhhccCCCCCCcceEEEeccccc
Confidence 6999999999999 77999999998543
No 60
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.2e-32 Score=297.15 Aligned_cols=374 Identities=18% Similarity=0.187 Sum_probs=245.9
Q ss_pred CchHHHHHHHHHHHhCCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCCE
Q 002552 282 PAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLGET 361 (908)
Q Consensus 282 pi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~~~~~~~g~~ 361 (908)
-...||..+....+.+ |++|+.|||-|||+.+.+.+...+... +.++|+++||+-|+.|.++.+.+.++.+....
T Consensus 15 e~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~----~~kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~i 89 (542)
T COG1111 15 EPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWF----GGKVLFLAPTKPLVLQHAEFCRKVTGIPEDEI 89 (542)
T ss_pred cHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhc----CCeEEEecCCchHHHHHHHHHHHHhCCChhhe
Confidence 3456898888887776 799999999999998888887665332 23899999999999999999999998876655
Q ss_pred EeEE--eecccc--CCCCCcEEEEchHHHHHHHhcCC-CCCcceEEEEechhccchhhHHHHHHHHHHCccCCCCcEEEe
Q 002552 362 VGYQ--IRLESK--RSAQTRLLFCTTGVLLRQLVEDP-DLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILM 436 (908)
Q Consensus 362 vg~~--~~~~~~--~~~~~~Iiv~T~g~Ll~~l~~~~-~l~~~~~iIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiIlm 436 (908)
+... ++-+.+ .....+|+|+||+.+.+-|..+. ++.+++|||+|||| |....--+..+.+..++...+..+++|
T Consensus 90 ~~ltGev~p~~R~~~w~~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAH-RAvGnyAYv~Va~~y~~~~k~~~ilgL 168 (542)
T COG1111 90 AALTGEVRPEEREELWAKKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAH-RAVGNYAYVFVAKEYLRSAKNPLILGL 168 (542)
T ss_pred eeecCCCChHHHHHHHhhCCEEEeccHHHHhHHhcCccChHHceEEEechhh-hccCcchHHHHHHHHHHhccCceEEEE
Confidence 5433 222211 12467899999999999998887 89999999999999 876666666777777777888999999
Q ss_pred cccC--ChHHHHhhhCCCCccccCCcc----------ccceeeehh--------hHHHh--------------hhcccCc
Q 002552 437 SATI--NADLFSKYFGNAPTVHIPGLT----------FPVTDLFLE--------DVLEK--------------TRYKMNS 482 (908)
Q Consensus 437 SAT~--~~~~~~~~f~~~~~i~v~~~~----------~~v~~~~l~--------~~~~~--------------~~~~~~~ 482 (908)
|||+ +.+.+.+...+..+-+|.-++ ..++..++. ++... ..+....
T Consensus 169 TASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~~g~~~~~ 248 (542)
T COG1111 169 TASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLKELGVIESS 248 (542)
T ss_pred ecCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcCceecc
Confidence 9999 555677666553332221111 122222211 11000 0000000
Q ss_pred c----ccccccc---ccccccccc-h------------hhhHhhhhhcccccccccchhhhhH-----------------
Q 002552 483 K----LDSFQGN---SRRSRRQDS-K------------KDHLTALFEDVDIDSNYKNYRASTR----------------- 525 (908)
Q Consensus 483 ~----~~~~~~~---~~~~~~~~~-~------------~~~~~~~~~~~~~~~~~~~~~~~~~----------------- 525 (908)
. .+.+... .......+. + -++..++++...+...+ +|-....
T Consensus 249 ~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~-~Yl~~l~e~~~~~~sk~a~~l~~d 327 (542)
T COG1111 249 SPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFY-QYLEKLEEEATKGGSKAAKSLLAD 327 (542)
T ss_pred CcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHH-HHHHHHHHHhcccchHHHHHHhcC
Confidence 0 0000000 000000000 0 01111111211111111 0000000
Q ss_pred ----hh---Hhhhhhhh---hchHHHHHHHHHHHhccCCCcEEEecCCHHHHHHHHHHHHhcccCCCCCceEEEe-----
Q 002552 526 ----AS---LEAWSAEQ---IDLGLVESTIEYICRHEGDGAILVFLTGWNDISKLLDQIKVNKFLGDPNKFLVLP----- 590 (908)
Q Consensus 526 ----~~---~~~~~~~~---~~~~li~~~l~~i~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~v~~----- 590 (908)
.. ........ .....+..++...++...+.++|||++-++.++.+.+.|...... ..+.+
T Consensus 328 ~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~-----~~~rFiGQa~ 402 (542)
T COG1111 328 PYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIK-----ARVRFIGQAS 402 (542)
T ss_pred hhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCc-----ceeEEeeccc
Confidence 00 00001111 123455566666666667789999999999999999999874321 11111
Q ss_pred --ccCCCChHhHHhhhCCCCCCCcEEEEeccccccccCCCCeEEEEeCCCccceeeccccCccccccccccHhhHHHhcc
Q 002552 591 --LHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETSYDALNKLACLLPSWISKASAHQRRG 668 (908)
Q Consensus 591 --lH~~l~~~er~~v~~~f~~g~~kIlvaT~iae~GidIp~v~~VId~g~~k~~~yd~~~~~~~l~~~~iS~~~~~QR~G 668 (908)
.-.||+|.+|.++++.|+.|..+|||||+|+|.|||||+|++||.|+... |.-.++||.|
T Consensus 403 r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifYEpvp------------------SeIR~IQR~G 464 (542)
T COG1111 403 REGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPVP------------------SEIRSIQRKG 464 (542)
T ss_pred cccccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEEecCCc------------------HHHHHHHhhC
Confidence 23579999999999999999999999999999999999999999987776 6669999999
Q ss_pred ccCCCCCcEEEEecChh
Q 002552 669 RAGRVQPGVCYKLYPRI 685 (908)
Q Consensus 669 RaGR~~~G~~~~l~~~~ 685 (908)
||||.++|..|.|+++.
T Consensus 465 RTGR~r~Grv~vLvt~g 481 (542)
T COG1111 465 RTGRKRKGRVVVLVTEG 481 (542)
T ss_pred ccccCCCCeEEEEEecC
Confidence 99999999999999875
No 61
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=1.6e-32 Score=323.24 Aligned_cols=338 Identities=17% Similarity=0.179 Sum_probs=200.3
Q ss_pred CCchHHHHHHHHHHHhCC-eEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCC--
Q 002552 281 LPAFKMKAEFLKAVAENQ-VLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGEN-- 357 (908)
Q Consensus 281 lpi~~~Q~~~i~~i~~~~-~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~~~~~~-- 357 (908)
..++++|.++++.++.|+ ++++++|||||||.++..+++-. ........++++++|||+||.|+++.+.+.....
T Consensus 14 ~~PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~--~~~~~~~~rLv~~vPtReLa~Qi~~~~~~~~k~l~~ 91 (844)
T TIGR02621 14 YSPFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAV--EIGAKVPRRLVYVVNRRTVVDQVTEEAEKIGERLPD 91 (844)
T ss_pred CCCCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccc--cccccccceEEEeCchHHHHHHHHHHHHHHHHHhcc
Confidence 448999999999999998 67888999999998766555532 1111122355567899999999998776643211
Q ss_pred --------------------CCCEEeEEeec------cccCCCCCcEEEEchHHHHHHHhc-C--------C----CCCc
Q 002552 358 --------------------LGETVGYQIRL------ESKRSAQTRLLFCTTGVLLRQLVE-D--------P----DLSC 398 (908)
Q Consensus 358 --------------------~g~~vg~~~~~------~~~~~~~~~Iiv~T~g~Ll~~l~~-~--------~----~l~~ 398 (908)
....+..-... ......+++|+|+|+.++.+.... + | .|++
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~D~i~sr~L~~gYg~~~~~~pi~ag~L~~ 171 (844)
T TIGR02621 92 VPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTVDMIGSRLLFSGYGCGFKSRPLHAGFLGQ 171 (844)
T ss_pred cchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECHHHHcCCccccccccccccccchhhhhcc
Confidence 01222211111 112345789999996554433221 0 0 2688
Q ss_pred ceEEEEechhccchhhHHHHHHHHHHCccCC---CCcEEEecccCChHH--HHhhhCCCC-ccccCCccccceeeehhhH
Q 002552 399 VSHLLVDEIHERGMNEDFLLIILRDLLPRRP---DLRLILMSATINADL--FSKYFGNAP-TVHIPGLTFPVTDLFLEDV 472 (908)
Q Consensus 399 ~~~iIiDEaHeR~~~~d~ll~~lk~~~~~~~---~~qiIlmSAT~~~~~--~~~~f~~~~-~i~v~~~~~~v~~~~l~~~ 472 (908)
+++|||||||..+...+.+..+++.+. ..+ ++|+++||||++.+. +...+...+ .+.+........ .
T Consensus 172 v~~LVLDEADLd~gF~~~l~~Il~~l~-rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i~V~~~~l~a~-----k- 244 (844)
T TIGR02621 172 DALIVHDEAHLEPAFQELLKQIMNEQQ-RPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYKHPVLKKRLAAK-----K- 244 (844)
T ss_pred ceEEEEehhhhccccHHHHHHHHHhcc-cCcccccceEEEEecCCCccHHHHHHHHccCCceeeccccccccc-----c-
Confidence 999999999943333333333433321 122 379999999997653 333332221 111110000000 0
Q ss_pred HHhhhcccCcccccccccccccccccchhhhHhhhhhcccccccccchhhhhHhhHhhhhhhhhchHHHHHHHHHHHhcc
Q 002552 473 LEKTRYKMNSKLDSFQGNSRRSRRQDSKKDHLTALFEDVDIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICRHE 552 (908)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~~ 552 (908)
+.+.+. ...... ...+...+..+.. .
T Consensus 245 -------------------------------i~q~v~------------v~~e~K----------l~~lv~~L~~ll~-e 270 (844)
T TIGR02621 245 -------------------------------IVKLVP------------PSDEKF----------LSTMVKELNLLMK-D 270 (844)
T ss_pred -------------------------------eEEEEe------------cChHHH----------HHHHHHHHHHHHh-h
Confidence 000000 000000 0001111222222 3
Q ss_pred CCCcEEEecCCHHHHHHHHHHHHhcccCCCCCceEEEeccCCCChHhHH-----hhhCCCCC----CC-------cEEEE
Q 002552 553 GDGAILVFLTGWNDISKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQR-----EIFDRPPP----NK-------RKIVL 616 (908)
Q Consensus 553 ~~g~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lH~~l~~~er~-----~v~~~f~~----g~-------~kIlv 616 (908)
..+++||||+|++.++.+++.|... ++ ..+||+|++.+|+ ++++.|++ |. .+|||
T Consensus 271 ~g~~vLVF~NTv~~Aq~L~~~L~~~-------g~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILV 341 (844)
T TIGR02621 271 SGGAILVFCRTVKHVRKVFAKLPKE-------KF--ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLV 341 (844)
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhc-------CC--eEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEe
Confidence 4678999999999999999999863 22 7799999999999 78888877 44 68999
Q ss_pred eccccccccCCCCeEEEEeCCCccceeeccccCccccccccccHhhHHHhccccCCCCC--cEEEEecChhhHhhc-CCC
Q 002552 617 ATNIAESSITIDDVVYVVDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRVQP--GVCYKLYPRIIHDAM-LPY 693 (908)
Q Consensus 617 aT~iae~GidIp~v~~VId~g~~k~~~yd~~~~~~~l~~~~iS~~~~~QR~GRaGR~~~--G~~~~l~~~~~~~~l-~~~ 693 (908)
||+++|+||||+. ++||+...| .++|+||+||+||.+. |..+.+++.+.-..- ...
T Consensus 342 ATdVaerGLDId~-d~VI~d~aP--------------------~esyIQRiGRtgR~G~~~~~~i~vv~~~~~~~~~~~v 400 (844)
T TIGR02621 342 CTSAGEVGVNISA-DHLVCDLAP--------------------FESMQQRFGRVNRFGELQACQIAVVHLDLGKDQDFDV 400 (844)
T ss_pred ccchhhhcccCCc-ceEEECCCC--------------------HHHHHHHhcccCCCCCCCCceEEEEeeccCCCcccCC
Confidence 9999999999997 777764333 2499999999999832 333454433111111 111
Q ss_pred CCCccccCchHHHHHHHh
Q 002552 694 QLPEILRTPLQELCLHIK 711 (908)
Q Consensus 694 ~~pei~r~~L~~~~L~~~ 711 (908)
-.|+++...+..+.+..+
T Consensus 401 Y~~~~l~~t~~~L~~~~~ 418 (844)
T TIGR02621 401 YGKKIDKSTWSTLKKLQQ 418 (844)
T ss_pred CCHHHHHHHHHHHHHHHh
Confidence 135666655555544444
No 62
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=4.1e-32 Score=325.93 Aligned_cols=301 Identities=18% Similarity=0.218 Sum_probs=210.6
Q ss_pred cCCCchHHHHHHHHHHHhC------CeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHH
Q 002552 279 EKLPAFKMKAEFLKAVAEN------QVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSS 352 (908)
Q Consensus 279 ~~lpi~~~Q~~~i~~i~~~------~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~ 352 (908)
-.+.++++|+++++.|.++ .+++++|+||||||.++.++++..+. .++++++++||++||.|+++.+.+
T Consensus 258 l~f~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~-----~g~q~lilaPT~~LA~Q~~~~l~~ 332 (681)
T PRK10917 258 LPFELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIE-----AGYQAALMAPTEILAEQHYENLKK 332 (681)
T ss_pred CCCCCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHH-----cCCeEEEEeccHHHHHHHHHHHHH
Confidence 3456899999999999886 38999999999999999999887653 256899999999999999999977
Q ss_pred HhCCCCCCEEeEEeeccc----------cCCCCCcEEEEchHHHHHHHhcCCCCCcceEEEEechhccchhhHHHHHHHH
Q 002552 353 ERGENLGETVGYQIRLES----------KRSAQTRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILR 422 (908)
Q Consensus 353 ~~~~~~g~~vg~~~~~~~----------~~~~~~~Iiv~T~g~Ll~~l~~~~~l~~~~~iIiDEaHeR~~~~d~ll~~lk 422 (908)
.+. ..|..++.-..... .....++|+|+||+.+.+ ...+.++++|||||+|.-+.. ...
T Consensus 333 l~~-~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~----~v~~~~l~lvVIDE~Hrfg~~--qr~---- 401 (681)
T PRK10917 333 LLE-PLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD----DVEFHNLGLVIIDEQHRFGVE--QRL---- 401 (681)
T ss_pred HHh-hcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc----cchhcccceEEEechhhhhHH--HHH----
Confidence 653 33455555433322 112358999999987643 226789999999999953222 211
Q ss_pred HHCccCCCCcEEEecccCChHHHH-hhhCCCCccccC---CccccceeeehhhHHHhhhcccCccccccccccccccccc
Q 002552 423 DLLPRRPDLRLILMSATINADLFS-KYFGNAPTVHIP---GLTFPVTDLFLEDVLEKTRYKMNSKLDSFQGNSRRSRRQD 498 (908)
Q Consensus 423 ~~~~~~~~~qiIlmSAT~~~~~~~-~~f~~~~~i~v~---~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (908)
.+.......++++||||+.+..+. .+++...+..+. ....|+...+...
T Consensus 402 ~l~~~~~~~~iL~~SATp~prtl~~~~~g~~~~s~i~~~p~~r~~i~~~~~~~--------------------------- 454 (681)
T PRK10917 402 ALREKGENPHVLVMTATPIPRTLAMTAYGDLDVSVIDELPPGRKPITTVVIPD--------------------------- 454 (681)
T ss_pred HHHhcCCCCCEEEEeCCCCHHHHHHHHcCCCceEEEecCCCCCCCcEEEEeCc---------------------------
Confidence 222233457899999998655432 333332221111 1111222211100
Q ss_pred chhhhHhhhhhcccccccccchhhhhHhhHhhhhhhhhchHHHHHHHHHHHhccCCCcEEEecCCH--------HHHHHH
Q 002552 499 SKKDHLTALFEDVDIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICRHEGDGAILVFLTGW--------NDISKL 570 (908)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~~~~g~iLVF~~~~--------~~i~~l 570 (908)
.. .+.+...+.... ..+.+++||||.. ..++.+
T Consensus 455 ~~-------------------------------------~~~~~~~i~~~~--~~g~q~~v~~~~ie~s~~l~~~~~~~~ 495 (681)
T PRK10917 455 SR-------------------------------------RDEVYERIREEI--AKGRQAYVVCPLIEESEKLDLQSAEET 495 (681)
T ss_pred cc-------------------------------------HHHHHHHHHHHH--HcCCcEEEEEcccccccchhHHHHHHH
Confidence 00 000111222212 3456899999964 345566
Q ss_pred HHHHHhcccCCCCCceEEEeccCCCChHhHHhhhCCCCCCCcEEEEeccccccccCCCCeEEEEeCCCccceeeccccCc
Q 002552 571 LDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETSYDALNKL 650 (908)
Q Consensus 571 ~~~L~~~~~~~~~~~~~v~~lH~~l~~~er~~v~~~f~~g~~kIlvaT~iae~GidIp~v~~VId~g~~k~~~yd~~~~~ 650 (908)
++.|.... ..+.|..+||+|++++|+++++.|++|+.+|||||+++|+|||+|++++||+++.++ |
T Consensus 496 ~~~L~~~~-----~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GiDip~v~~VIi~~~~r---~------ 561 (681)
T PRK10917 496 YEELQEAF-----PELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEVGVDVPNATVMVIENAER---F------ 561 (681)
T ss_pred HHHHHHHC-----CCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceeeCcccCCCcEEEEeCCCC---C------
Confidence 77776531 247799999999999999999999999999999999999999999999999988776 1
Q ss_pred cccccccccHhhHHHhccccCCC-CCcEEEEecC
Q 002552 651 ACLLPSWISKASAHQRRGRAGRV-QPGVCYKLYP 683 (908)
Q Consensus 651 ~~l~~~~iS~~~~~QR~GRaGR~-~~G~~~~l~~ 683 (908)
+.+++.||+||+||. ..|.||.+++
T Consensus 562 --------gls~lhQ~~GRvGR~g~~g~~ill~~ 587 (681)
T PRK10917 562 --------GLAQLHQLRGRVGRGAAQSYCVLLYK 587 (681)
T ss_pred --------CHHHHHHHhhcccCCCCceEEEEEEC
Confidence 345889999999999 6899999996
No 63
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=6.4e-33 Score=302.58 Aligned_cols=342 Identities=20% Similarity=0.223 Sum_probs=256.5
Q ss_pred CCchHHHhHHHHHHHHHHHhccChhHHHHHHhhcCCCchHHHHHHHHHHHhCCeEEEEecCCCCccchHHHHHHHHHHhc
Q 002552 246 QSDSAKERLNVILKERQEKLKSSDSGKAMLSFREKLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSS 325 (908)
Q Consensus 246 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~r~~lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~~~~il~~~~~~ 325 (908)
.+++....+...+...+.+. ..--++++|..+||+++.+-|+||+|..|+|||+.|....++.+..
T Consensus 24 ~~~fe~l~l~r~vl~glrrn-------------~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~- 89 (980)
T KOG4284|consen 24 TPGFEQLALWREVLLGLRRN-------------AFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDS- 89 (980)
T ss_pred CCCHHHHHHHHHHHHHHHhh-------------cccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCc-
Confidence 45566666655555444332 2334578999999999999999999999999999988888877643
Q ss_pred cCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCCEE----eEE-eeccccCCCCCcEEEEchHHHHHHHhcCC-CCCcc
Q 002552 326 LRGADCNIICTQPRRISAISVAARVSSERGENLGETV----GYQ-IRLESKRSAQTRLLFCTTGVLLRQLVEDP-DLSCV 399 (908)
Q Consensus 326 ~~~~~~~ilv~~P~r~la~qi~~rv~~~~~~~~g~~v----g~~-~~~~~~~~~~~~Iiv~T~g~Ll~~l~~~~-~l~~~ 399 (908)
+.....+++++|||++|+||...+.+....--|..+ |-. ...+......|+|+|+|||+++.++..+. +.+++
T Consensus 90 -~~~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk~~rIvIGtPGRi~qL~el~~~n~s~v 168 (980)
T KOG4284|consen 90 -RSSHIQKVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLKQTRIVIGTPGRIAQLVELGAMNMSHV 168 (980)
T ss_pred -ccCcceeEEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhhhceEEecCchHHHHHHHhcCCCccce
Confidence 334667888899999999999888765433223332 221 33333445689999999999999998877 89999
Q ss_pred eEEEEechhccchhhH-HHHHHHHHHCccCCCCcEEEecccCChH---HHHhhhCCCCccccCCcc---ccceeeehhhH
Q 002552 400 SHLLVDEIHERGMNED-FLLIILRDLLPRRPDLRLILMSATINAD---LFSKYFGNAPTVHIPGLT---FPVTDLFLEDV 472 (908)
Q Consensus 400 ~~iIiDEaHeR~~~~d-~ll~~lk~~~~~~~~~qiIlmSAT~~~~---~~~~~f~~~~~i~v~~~~---~~v~~~~l~~~ 472 (908)
+++||||||.. ++++ |-..+-+.+..+....|++.+|||.+.. .+++|+.++..+....+. +.+..+|....
T Consensus 169 rlfVLDEADkL-~~t~sfq~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~~L~GikQyv~~~~ 247 (980)
T KOG4284|consen 169 RLFVLDEADKL-MDTESFQDDINIIINSLPQIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNADDVQLFGIKQYVVAKC 247 (980)
T ss_pred eEEEeccHHhh-hchhhHHHHHHHHHHhcchhheeeEEeccCchhHHHHHHHHhcccceeecccCCceeechhheeeecc
Confidence 99999999954 4544 4444444555566678999999999765 488888877666544332 22333322100
Q ss_pred HHhhhcccCcccccccccccccccccchhhhHhhhhhcccccccccchhhhhHhhHhhhhhhhhchHHHHHHHHHHHhcc
Q 002552 473 LEKTRYKMNSKLDSFQGNSRRSRRQDSKKDHLTALFEDVDIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICRHE 552 (908)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~~ 552 (908)
.+. .+.. ...+....+.++++.-
T Consensus 248 -------------------------------------------s~n-------nsve-------emrlklq~L~~vf~~i 270 (980)
T KOG4284|consen 248 -------------------------------------------SPN-------NSVE-------EMRLKLQKLTHVFKSI 270 (980)
T ss_pred -------------------------------------------CCc-------chHH-------HHHHHHHHHHHHHhhC
Confidence 000 0000 0123445666777766
Q ss_pred CCCcEEEecCCHHHHHHHHHHHHhcccCCCCCceEEEeccCCCChHhHHhhhCCCCCCCcEEEEeccccccccCCCCeEE
Q 002552 553 GDGAILVFLTGWNDISKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVY 632 (908)
Q Consensus 553 ~~g~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lH~~l~~~er~~v~~~f~~g~~kIlvaT~iae~GidIp~v~~ 632 (908)
+-.+.||||.....++.++..|.. .++.+.++.|.|.|.+|..+++..+.-.++|||+||..+||||-|+|++
T Consensus 271 py~QAlVF~~~~sra~~~a~~L~s-------sG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTDLtaRGIDa~~vNL 343 (980)
T KOG4284|consen 271 PYVQALVFCDQISRAEPIATHLKS-------SGLDVTFISGAMSQKDRLLAVDQLRAFRVRILVSTDLTARGIDADNVNL 343 (980)
T ss_pred chHHHHhhhhhhhhhhHHHHHhhc-------cCCCeEEeccccchhHHHHHHHHhhhceEEEEEecchhhccCCccccce
Confidence 777899999999999999999987 6778888999999999999999999999999999999999999999999
Q ss_pred EEeCCCccceeeccccCccccccccccHhhHHHhccccCCC-CCcEEEEecChh
Q 002552 633 VVDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRV-QPGVCYKLYPRI 685 (908)
Q Consensus 633 VId~g~~k~~~yd~~~~~~~l~~~~iS~~~~~QR~GRaGR~-~~G~~~~l~~~~ 685 (908)
|||.|.|.+-. .|.||+|||||. ..|.++.|+-.+
T Consensus 344 VVNiD~p~d~e------------------TY~HRIGRAgRFG~~G~aVT~~~~~ 379 (980)
T KOG4284|consen 344 VVNIDAPADEE------------------TYFHRIGRAGRFGAHGAAVTLLEDE 379 (980)
T ss_pred EEecCCCcchH------------------HHHHHhhhcccccccceeEEEeccc
Confidence 99999998444 899999999999 669999988653
No 64
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=3.8e-32 Score=336.58 Aligned_cols=301 Identities=18% Similarity=0.223 Sum_probs=209.5
Q ss_pred cCCCchHHHHHHHHHHHhC------CeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHH
Q 002552 279 EKLPAFKMKAEFLKAVAEN------QVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSS 352 (908)
Q Consensus 279 ~~lpi~~~Q~~~i~~i~~~------~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~ 352 (908)
-.+.+++.|.++|+.++++ .+++++|+||||||.++..+++.... .+++++|++||++||.|+++.+.+
T Consensus 597 ~~~~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~-----~g~qvlvLvPT~eLA~Q~~~~f~~ 671 (1147)
T PRK10689 597 FPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVE-----NHKQVAVLVPTTLLAQQHYDNFRD 671 (1147)
T ss_pred CCCCCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHH-----cCCeEEEEeCcHHHHHHHHHHHHH
Confidence 3446889999999999987 79999999999999887766655432 246899999999999999999977
Q ss_pred HhCCCCCCEEeEEeeccc----------cCCCCCcEEEEchHHHHHHHhcCCCCCcceEEEEechhccchhhHHHHHHHH
Q 002552 353 ERGENLGETVGYQIRLES----------KRSAQTRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILR 422 (908)
Q Consensus 353 ~~~~~~g~~vg~~~~~~~----------~~~~~~~Iiv~T~g~Ll~~l~~~~~l~~~~~iIiDEaHeR~~~~d~ll~~lk 422 (908)
.+.. .+..+..-.+... ......+|+|+||+.| ..+..+.++++|||||+|+.+.. . ..
T Consensus 672 ~~~~-~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL----~~~v~~~~L~lLVIDEahrfG~~--~----~e 740 (1147)
T PRK10689 672 RFAN-WPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLL----QSDVKWKDLGLLIVDEEHRFGVR--H----KE 740 (1147)
T ss_pred hhcc-CCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHH----hCCCCHhhCCEEEEechhhcchh--H----HH
Confidence 6543 2333332222111 0123579999999744 23346789999999999953322 1 22
Q ss_pred HHCccCCCCcEEEecccCChHHHH---hhhCCCCccccCCc-cccceeeehhhHHHhhhcccCccccccccccccccccc
Q 002552 423 DLLPRRPDLRLILMSATINADLFS---KYFGNAPTVHIPGL-TFPVTDLFLEDVLEKTRYKMNSKLDSFQGNSRRSRRQD 498 (908)
Q Consensus 423 ~~~~~~~~~qiIlmSAT~~~~~~~---~~f~~~~~i~v~~~-~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (908)
.+....++.++++||||+.+..+. ..+.+..++..+.. ..++..++..
T Consensus 741 ~lk~l~~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~~r~~v~~~~~~---------------------------- 792 (1147)
T PRK10689 741 RIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVRE---------------------------- 792 (1147)
T ss_pred HHHhcCCCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCCCCCCceEEEEe----------------------------
Confidence 233345689999999998665432 22223333322211 1122211100
Q ss_pred chhhhHhhhhhcccccccccchhhhhHhhHhhhhhhhhchHHHHHHHHHHHhccCCCcEEEecCCHHHHHHHHHHHHhcc
Q 002552 499 SKKDHLTALFEDVDIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICRHEGDGAILVFLTGWNDISKLLDQIKVNK 578 (908)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~ 578 (908)
+ .+......++..+. .+++++||+++.+.++.+++.|.+..
T Consensus 793 ---------------------~---------------~~~~~k~~il~el~---r~gqv~vf~n~i~~ie~la~~L~~~~ 833 (1147)
T PRK10689 793 ---------------------Y---------------DSLVVREAILREIL---RGGQVYYLYNDVENIQKAAERLAELV 833 (1147)
T ss_pred ---------------------c---------------CcHHHHHHHHHHHh---cCCeEEEEECCHHHHHHHHHHHHHhC
Confidence 0 00001122333333 35789999999999999999998631
Q ss_pred cCCCCCceEEEeccCCCChHhHHhhhCCCCCCCcEEEEeccccccccCCCCeEEEEeCCCccceeeccccCccccccccc
Q 002552 579 FLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETSYDALNKLACLLPSWI 658 (908)
Q Consensus 579 ~~~~~~~~~v~~lH~~l~~~er~~v~~~f~~g~~kIlvaT~iae~GidIp~v~~VId~g~~k~~~yd~~~~~~~l~~~~i 658 (908)
.++.|..+||+|++++|++++..|++|+.+|||||+++|+|||||+|++||..+... |
T Consensus 834 -----p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi~~ad~---f-------------- 891 (1147)
T PRK10689 834 -----PEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADH---F-------------- 891 (1147)
T ss_pred -----CCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEEEEecCCC---C--------------
Confidence 356788999999999999999999999999999999999999999999999422111 1
Q ss_pred cHhhHHHhccccCCC-CCcEEEEecCh
Q 002552 659 SKASAHQRRGRAGRV-QPGVCYKLYPR 684 (908)
Q Consensus 659 S~~~~~QR~GRaGR~-~~G~~~~l~~~ 684 (908)
+.++|.||+||+||. ..|.||.++..
T Consensus 892 glaq~~Qr~GRvGR~g~~g~a~ll~~~ 918 (1147)
T PRK10689 892 GLAQLHQLRGRVGRSHHQAYAWLLTPH 918 (1147)
T ss_pred CHHHHHHHhhccCCCCCceEEEEEeCC
Confidence 224699999999999 78999998854
No 65
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.5e-33 Score=290.92 Aligned_cols=335 Identities=18% Similarity=0.257 Sum_probs=246.5
Q ss_pred chHHHhHHHHHHHHHHHhccChhHHHHHHhhcCCCchHHHHHHHHHHHhCCeEEEEecCCCCccchHHHHHHHHHHhccC
Q 002552 248 DSAKERLNVILKERQEKLKSSDSGKAMLSFREKLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLR 327 (908)
Q Consensus 248 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~r~~lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~ 327 (908)
+++...+.+.|...+..+.++. +..+|+.+|..+..|.|+++.+++|+|||.++...+++.+-. .
T Consensus 27 sfddm~L~e~LLrgiy~yGFek-------------PSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~--~ 91 (397)
T KOG0327|consen 27 SFDDMNLKESLLRGIYAYGFEK-------------PSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDM--S 91 (397)
T ss_pred hhhhcCCCHHHHhHHHhhccCC-------------chHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCc--c
Confidence 4555666666666666555543 346899999999999999999999999999999988887522 2
Q ss_pred CCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCCEE----eEE-ee-ccc-cCCCCCcEEEEchHHHHHHHhcCC-CCCcc
Q 002552 328 GADCNIICTQPRRISAISVAARVSSERGENLGETV----GYQ-IR-LES-KRSAQTRLLFCTTGVLLRQLVEDP-DLSCV 399 (908)
Q Consensus 328 ~~~~~ilv~~P~r~la~qi~~rv~~~~~~~~g~~v----g~~-~~-~~~-~~~~~~~Iiv~T~g~Ll~~l~~~~-~l~~~ 399 (908)
...+.+++++|+|+||.|+.+.+ ..++...+..+ |.. .+ ... ......+|++.|||+.++++.... ....+
T Consensus 92 ~ke~qalilaPtreLa~qi~~v~-~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~i 170 (397)
T KOG0327|consen 92 VKETQALILAPTRELAQQIQKVV-RALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGI 170 (397)
T ss_pred hHHHHHHHhcchHHHHHHHHHHH-HhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccccccccce
Confidence 34678999999999999998544 44444333322 221 11 111 122368999999999999997776 56779
Q ss_pred eEEEEechhccchhhHHHHHHHHHHCccCCCCcEEEecccCChHH--HHhhhCCCCc-cccCCccccceeeehhhHHHhh
Q 002552 400 SHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILMSATINADL--FSKYFGNAPT-VHIPGLTFPVTDLFLEDVLEKT 476 (908)
Q Consensus 400 ~~iIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiIlmSAT~~~~~--~~~~f~~~~~-i~v~~~~~~v~~~~l~~~~~~~ 476 (908)
.+.|+||++|+ +..+|...+.......+++.|++++|||++.+. +.+-|...|+ +.+...... ++-
T Consensus 171 KmfvlDEaDEm-Ls~gfkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~lt---------l~g- 239 (397)
T KOG0327|consen 171 KMFVLDEADEM-LSRGFKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDELT---------LEG- 239 (397)
T ss_pred eEEeecchHhh-hccchHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhccCceEEEecchhhh---------hhh-
Confidence 99999999965 777788887777777888999999999998875 3344433332 222111000 000
Q ss_pred hcccCcccccccccccccccccchhhhHhhhhhcccccccccchhhhhHhhHhhhhhhhhchHHHHHHHHHHHhccCCCc
Q 002552 477 RYKMNSKLDSFQGNSRRSRRQDSKKDHLTALFEDVDIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICRHEGDGA 556 (908)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~~~~g~ 556 (908)
+.+.+- +.. .+-+...+..++. .-.+
T Consensus 240 ---------------------------ikq~~i---------~v~----------------k~~k~~~l~dl~~--~~~q 265 (397)
T KOG0327|consen 240 ---------------------------IKQFYI---------NVE----------------KEEKLDTLCDLYR--RVTQ 265 (397)
T ss_pred ---------------------------eeeeee---------ecc----------------ccccccHHHHHHH--hhhc
Confidence 000000 000 0001223334443 3456
Q ss_pred EEEecCCHHHHHHHHHHHHhcccCCCCCceEEEeccCCCChHhHHhhhCCCCCCCcEEEEeccccccccCCCCeEEEEeC
Q 002552 557 ILVFLTGWNDISKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDC 636 (908)
Q Consensus 557 iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lH~~l~~~er~~v~~~f~~g~~kIlvaT~iae~GidIp~v~~VId~ 636 (908)
.+||++|++.+..+.+.|.. .++.+..+|++|.+.+|..+++.|+.|..+|||+|+.+++|+|+-.+..||++
T Consensus 266 ~~if~nt~r~v~~l~~~L~~-------~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~slviny 338 (397)
T KOG0327|consen 266 AVIFCNTRRKVDNLTDKLRA-------HGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSLVVNY 338 (397)
T ss_pred ceEEecchhhHHHHHHHHhh-------CCceEEEeecccchhhhhHHHHHhhcCCceEEeeccccccccchhhcceeeee
Confidence 89999999999999999976 67889999999999999999999999999999999999999999999999999
Q ss_pred CCccceeeccccCccccccccccHhhHHHhccccCCC-CCcEEEEecChhhHh
Q 002552 637 GKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRV-QPGVCYKLYPRIIHD 688 (908)
Q Consensus 637 g~~k~~~yd~~~~~~~l~~~~iS~~~~~QR~GRaGR~-~~G~~~~l~~~~~~~ 688 (908)
++|..+. +|+||+||+||. ++|.++.+.++++-.
T Consensus 339 dlP~~~~------------------~yihR~gr~gr~grkg~~in~v~~~d~~ 373 (397)
T KOG0327|consen 339 DLPARKE------------------NYIHRIGRAGRFGRKGVAINFVTEEDVR 373 (397)
T ss_pred ccccchh------------------hhhhhcccccccCCCceeeeeehHhhHH
Confidence 9998444 999999999999 889999999986654
No 66
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=2.2e-31 Score=317.67 Aligned_cols=301 Identities=19% Similarity=0.263 Sum_probs=206.0
Q ss_pred CCchHHHHHHHHHHHhC------CeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHh
Q 002552 281 LPAFKMKAEFLKAVAEN------QVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSER 354 (908)
Q Consensus 281 lpi~~~Q~~~i~~i~~~------~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~~~ 354 (908)
..+++.|+++++.|.++ .+.+++|+||||||.++.++++..... +.++++++||++||.|+++.+.+.+
T Consensus 234 f~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~-----g~qvlilaPT~~LA~Q~~~~~~~l~ 308 (630)
T TIGR00643 234 FKLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEA-----GYQVALMAPTEILAEQHYNSLRNLL 308 (630)
T ss_pred CCCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHc-----CCcEEEECCHHHHHHHHHHHHHHHh
Confidence 35789999999999875 258999999999999998888876532 4579999999999999999998765
Q ss_pred CCCCCCEEeEEeecc----------ccCCCCCcEEEEchHHHHHHHhcCCCCCcceEEEEechhccchhhHHHHHHHHHH
Q 002552 355 GENLGETVGYQIRLE----------SKRSAQTRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDL 424 (908)
Q Consensus 355 ~~~~g~~vg~~~~~~----------~~~~~~~~Iiv~T~g~Ll~~l~~~~~l~~~~~iIiDEaHeR~~~~d~ll~~lk~~ 424 (908)
. ..|..++.-.... .......+|+|+||+.+.+ ...+.++++|||||+|..+... ...++ ..
T Consensus 309 ~-~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~----~~~~~~l~lvVIDEaH~fg~~q--r~~l~-~~ 380 (630)
T TIGR00643 309 A-PLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE----KVEFKRLALVIIDEQHRFGVEQ--RKKLR-EK 380 (630)
T ss_pred c-ccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc----cccccccceEEEechhhccHHH--HHHHH-Hh
Confidence 4 2344444332211 1113357999999987653 2367899999999999533321 11121 11
Q ss_pred CccCCCCcEEEecccCChHHHH-hhhCCCCccc---cCCccccceeeehhhHHHhhhcccCcccccccccccccccccch
Q 002552 425 LPRRPDLRLILMSATINADLFS-KYFGNAPTVH---IPGLTFPVTDLFLEDVLEKTRYKMNSKLDSFQGNSRRSRRQDSK 500 (908)
Q Consensus 425 ~~~~~~~qiIlmSAT~~~~~~~-~~f~~~~~i~---v~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (908)
.......++++||||+.+..+. ..++...+.. .+....|+...+...
T Consensus 381 ~~~~~~~~~l~~SATp~prtl~l~~~~~l~~~~i~~~p~~r~~i~~~~~~~----------------------------- 431 (630)
T TIGR00643 381 GQGGFTPHVLVMSATPIPRTLALTVYGDLDTSIIDELPPGRKPITTVLIKH----------------------------- 431 (630)
T ss_pred cccCCCCCEEEEeCCCCcHHHHHHhcCCcceeeeccCCCCCCceEEEEeCc-----------------------------
Confidence 1111257899999997555433 2222211111 111111222211100
Q ss_pred hhhHhhhhhcccccccccchhhhhHhhHhhhhhhhhchHHHHHHHHHHHhc-cCCCcEEEecCCH--------HHHHHHH
Q 002552 501 KDHLTALFEDVDIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICRH-EGDGAILVFLTGW--------NDISKLL 571 (908)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~-~~~g~iLVF~~~~--------~~i~~l~ 571 (908)
+ + ...++..+.+. ..+.+++|||+.. ..++.++
T Consensus 432 -~----------------------------------~---~~~~~~~i~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~ 473 (630)
T TIGR00643 432 -D----------------------------------E---KDIVYEFIEEEIAKGRQAYVVYPLIEESEKLDLKAAEALY 473 (630)
T ss_pred -c----------------------------------h---HHHHHHHHHHHHHhCCcEEEEEccccccccchHHHHHHHH
Confidence 0 0 00111112111 2356899999975 3455666
Q ss_pred HHHHhcccCCCCCceEEEeccCCCChHhHHhhhCCCCCCCcEEEEeccccccccCCCCeEEEEeCCCccceeeccccCcc
Q 002552 572 DQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETSYDALNKLA 651 (908)
Q Consensus 572 ~~L~~~~~~~~~~~~~v~~lH~~l~~~er~~v~~~f~~g~~kIlvaT~iae~GidIp~v~~VId~g~~k~~~yd~~~~~~ 651 (908)
+.|.... .++.|..+||+|++++|+++++.|++|+.+|||||+++|+|||+|++++||.++.++ |
T Consensus 474 ~~L~~~~-----~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GvDiP~v~~VIi~~~~r---~------- 538 (630)
T TIGR00643 474 ERLKKAF-----PKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIEVGVDVPNATVMVIEDAER---F------- 538 (630)
T ss_pred HHHHhhC-----CCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECceeecCcccCCCcEEEEeCCCc---C-------
Confidence 7776421 467899999999999999999999999999999999999999999999999988776 1
Q ss_pred ccccccccHhhHHHhccccCCC-CCcEEEEecC
Q 002552 652 CLLPSWISKASAHQRRGRAGRV-QPGVCYKLYP 683 (908)
Q Consensus 652 ~l~~~~iS~~~~~QR~GRaGR~-~~G~~~~l~~ 683 (908)
+.+++.||+|||||. ..|.||.++.
T Consensus 539 -------gls~lhQ~~GRvGR~g~~g~~il~~~ 564 (630)
T TIGR00643 539 -------GLSQLHQLRGRVGRGDHQSYCLLVYK 564 (630)
T ss_pred -------CHHHHHHHhhhcccCCCCcEEEEEEC
Confidence 345899999999998 6899999984
No 67
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.98 E-value=3.1e-31 Score=302.88 Aligned_cols=381 Identities=17% Similarity=0.202 Sum_probs=226.0
Q ss_pred hcCCCchHHHHHHHHHHHhCCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCC
Q 002552 278 REKLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGEN 357 (908)
Q Consensus 278 r~~lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~~~~~~ 357 (908)
...+++..||.++....+ ++|+||++|||+|||..+...+++++-.. +..+||+++|++-|+.|....+.. ++..
T Consensus 58 p~~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~---p~~KiVF~aP~~pLv~QQ~a~~~~-~~~~ 132 (746)
T KOG0354|consen 58 PTNLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWR---PKGKVVFLAPTRPLVNQQIACFSI-YLIP 132 (746)
T ss_pred cCcccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcC---CcceEEEeeCCchHHHHHHHHHhh-ccCc
Confidence 356889999999999999 99999999999999999988888876432 347999999999999998755543 3322
Q ss_pred CCCEEeEEeeccc-----cCCCCCcEEEEchHHHHHHHhcCC--CCCcceEEEEechhccchhhHHHHHHHHHHCccC-C
Q 002552 358 LGETVGYQIRLES-----KRSAQTRLLFCTTGVLLRQLVEDP--DLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRR-P 429 (908)
Q Consensus 358 ~g~~vg~~~~~~~-----~~~~~~~Iiv~T~g~Ll~~l~~~~--~l~~~~~iIiDEaHeR~~~~d~ll~~lk~~~~~~-~ 429 (908)
... .+.....-. ..-...+|.|+||++|.+.|.+.. .|+.+++||||||| |..-.--+-.+++.++... .
T Consensus 133 ~~~-T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~H-ra~kn~~Y~~Vmr~~l~~k~~ 210 (746)
T KOG0354|consen 133 YSV-TGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECH-RTSKNHPYNNIMREYLDLKNQ 210 (746)
T ss_pred ccc-eeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccc-cccccccHHHHHHHHHHhhhc
Confidence 111 111111000 112367999999999999998755 57899999999999 5544334444454444333 3
Q ss_pred CCcEEEecccCCh--HHHHhhhCCCCc-cccC--------------Cccccceee------------ehhhHHHhhhc--
Q 002552 430 DLRLILMSATINA--DLFSKYFGNAPT-VHIP--------------GLTFPVTDL------------FLEDVLEKTRY-- 478 (908)
Q Consensus 430 ~~qiIlmSAT~~~--~~~~~~f~~~~~-i~v~--------------~~~~~v~~~------------~l~~~~~~~~~-- 478 (908)
..|||++|||+.. +...++..+.-. +.+. -...|+... +++.++.....
T Consensus 211 ~~qILgLTASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~i~p~l~~l~~~~ 290 (746)
T KOG0354|consen 211 GNQILGLTASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGMIIEPLLQQLQEEG 290 (746)
T ss_pred cccEEEEecCCCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHHHHHHHHHHHHhcC
Confidence 3499999999943 335555543110 1110 011222200 01111111110
Q ss_pred --ccCcccccccc------cccccccccchh-h-hHhh-------hhhccccc--ccc---cchhhh-------------
Q 002552 479 --KMNSKLDSFQG------NSRRSRRQDSKK-D-HLTA-------LFEDVDID--SNY---KNYRAS------------- 523 (908)
Q Consensus 479 --~~~~~~~~~~~------~~~~~~~~~~~~-~-~~~~-------~~~~~~~~--~~~---~~~~~~------------- 523 (908)
........+.. ..........+. + .... ++....+. ..+ .++...
T Consensus 291 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~~k~~~~~~e~ 370 (746)
T KOG0354|consen 291 LIEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEEVALKKYLKLELEA 370 (746)
T ss_pred ccccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccccchhHHHHHHhcc
Confidence 00000000000 000000000000 0 0000 00000000 000 000000
Q ss_pred -----hHhhHhhhh--h-----hhhchHHHHHHHHHHHhccCCCcEEEecCCHHHHHHHHHHHHhcccCCCCCceEEEec
Q 002552 524 -----TRASLEAWS--A-----EQIDLGLVESTIEYICRHEGDGAILVFLTGWNDISKLLDQIKVNKFLGDPNKFLVLPL 591 (908)
Q Consensus 524 -----~~~~~~~~~--~-----~~~~~~li~~~l~~i~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~v~~l 591 (908)
....+.... . ....+..+...+.......+..++|||+.+++.++.|..+|.+....+-...+-|..-
T Consensus 371 ~~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~ 450 (746)
T KOG0354|consen 371 RLIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQG 450 (746)
T ss_pred hhhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhcccccceeeecc
Confidence 000000000 0 0111223333333334456678999999999999999999985221111122222222
Q ss_pred c----CCCChHhHHhhhCCCCCCCcEEEEeccccccccCCCCeEEEEeCCCccceeeccccCccccccccccHhhHHHhc
Q 002552 592 H----GSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETSYDALNKLACLLPSWISKASAHQRR 667 (908)
Q Consensus 592 H----~~l~~~er~~v~~~f~~g~~kIlvaT~iae~GidIp~v~~VId~g~~k~~~yd~~~~~~~l~~~~iS~~~~~QR~ 667 (908)
+ .+|++.+|+++++.|+.|..+|||||+|+|+||||+.|+.||.||... |.-..+||+
T Consensus 451 ~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIcYd~~s------------------npIrmIQrr 512 (746)
T KOG0354|consen 451 KSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVICYDYSS------------------NPIRMVQRR 512 (746)
T ss_pred ccccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEEecCCc------------------cHHHHHHHh
Confidence 2 479999999999999999999999999999999999999999988777 445899999
Q ss_pred cccCCCCCcEEEEecCh
Q 002552 668 GRAGRVQPGVCYKLYPR 684 (908)
Q Consensus 668 GRaGR~~~G~~~~l~~~ 684 (908)
|| ||.+.|.|+.|++.
T Consensus 513 GR-gRa~ns~~vll~t~ 528 (746)
T KOG0354|consen 513 GR-GRARNSKCVLLTTG 528 (746)
T ss_pred cc-ccccCCeEEEEEcc
Confidence 99 99999999999995
No 68
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=1.6e-31 Score=279.94 Aligned_cols=316 Identities=21% Similarity=0.174 Sum_probs=235.2
Q ss_pred CchHHHHHHHHHHHhCCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCC---
Q 002552 282 PAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENL--- 358 (908)
Q Consensus 282 pi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~~~~~~~--- 358 (908)
-++|+|.+.+|.++++++++..|-||||||.++.+++++.+.... ..+.+.+++.|+|+||.|..+-++.. +.-.
T Consensus 43 ~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s-~~g~RalilsptreLa~qtlkvvkdl-grgt~lr 120 (529)
T KOG0337|consen 43 TPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHS-QTGLRALILSPTRELALQTLKVVKDL-GRGTKLR 120 (529)
T ss_pred CCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhcc-ccccceeeccCcHHHHHHHHHHHHHh-ccccchh
Confidence 356799999999999999999999999999999999999987654 44678999999999999998776543 3322
Q ss_pred -CCEEeEEeec--cccCCCCCcEEEEchHHHHHHHhcCC-CCCcceEEEEechhccchhhHHHHHHHHHHCccCCCCcEE
Q 002552 359 -GETVGYQIRL--ESKRSAQTRLLFCTTGVLLRQLVEDP-DLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLI 434 (908)
Q Consensus 359 -g~~vg~~~~~--~~~~~~~~~Iiv~T~g~Ll~~l~~~~-~l~~~~~iIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiI 434 (908)
...+|+.--. ......+.+|+++|||+++.....-. .|+.+.+||+||++ |-..++|-.++-+.+.+...+.|++
T Consensus 121 ~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEad-rlfemgfqeql~e~l~rl~~~~QTl 199 (529)
T KOG0337|consen 121 QSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEAD-RLFEMGFQEQLHEILSRLPESRQTL 199 (529)
T ss_pred hhhhcccchHHHHHHHhccCCCEEEecCceeeeeehheeccccceeeeeehhhh-HHHhhhhHHHHHHHHHhCCCcceEE
Confidence 2233432111 12345689999999999987665444 78999999999999 8888889888888888888889999
Q ss_pred EecccCChHH--HHhhhCCCCccccCCccccceeeehhhHHHhhhcccCcccccccccccccccccchhhhHhhhhhccc
Q 002552 435 LMSATINADL--FSKYFGNAPTVHIPGLTFPVTDLFLEDVLEKTRYKMNSKLDSFQGNSRRSRRQDSKKDHLTALFEDVD 512 (908)
Q Consensus 435 lmSAT~~~~~--~~~~f~~~~~i~v~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (908)
+||||++... |++- |-..|+.+. ++ +-. ...+.+.-.+..
T Consensus 200 lfSatlp~~lv~faka----------Gl~~p~lVR-ld-vet------------------------kise~lk~~f~~-- 241 (529)
T KOG0337|consen 200 LFSATLPRDLVDFAKA----------GLVPPVLVR-LD-VET------------------------KISELLKVRFFR-- 241 (529)
T ss_pred EEeccCchhhHHHHHc----------cCCCCceEE-ee-hhh------------------------hcchhhhhheee--
Confidence 9999998774 3321 122222221 00 000 000000000000
Q ss_pred ccccccchhhhhHhhHhhhhhhhhchHHHHHHHHHHHhc-cCCCcEEEecCCHHHHHHHHHHHHhcccCCCCCceEEEec
Q 002552 513 IDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICRH-EGDGAILVFLTGWNDISKLLDQIKVNKFLGDPNKFLVLPL 591 (908)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~-~~~g~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~v~~l 591 (908)
+..+-....+.+++.. -.+.+++||++|+..++.+...|.. .++.+-.+
T Consensus 242 -----------------------~~~a~K~aaLl~il~~~~~~~~t~vf~~tk~hve~~~~ll~~-------~g~~~s~i 291 (529)
T KOG0337|consen 242 -----------------------VRKAEKEAALLSILGGRIKDKQTIVFVATKHHVEYVRGLLRD-------FGGEGSDI 291 (529)
T ss_pred -----------------------eccHHHHHHHHHHHhccccccceeEEecccchHHHHHHHHHh-------cCCCcccc
Confidence 0001123444444432 2345799999999999999999988 45556669
Q ss_pred cCCCChHhHHhhhCCCCCCCcEEEEeccccccccCCCCeEEEEeCCCccceeeccccCccccccccccHhhHHHhccccC
Q 002552 592 HGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAG 671 (908)
Q Consensus 592 H~~l~~~er~~v~~~f~~g~~kIlvaT~iae~GidIp~v~~VId~g~~k~~~yd~~~~~~~l~~~~iS~~~~~QR~GRaG 671 (908)
+|.|.+..|..-+..|+.++..++|.|++|+||+|||-.+-|||+++|-... -|+||.||+.
T Consensus 292 ysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldnvinyd~p~~~k------------------lFvhRVgr~a 353 (529)
T KOG0337|consen 292 YSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDNVINYDFPPDDK------------------LFVHRVGRVA 353 (529)
T ss_pred ccccChHhhhhccccccCCccceEEEehhhhccCCCccccccccccCCCCCc------------------eEEEEecchh
Confidence 9999999999999999999999999999999999999999999999976444 5889999999
Q ss_pred CC-CCcEEEEecChhh
Q 002552 672 RV-QPGVCYKLYPRII 686 (908)
Q Consensus 672 R~-~~G~~~~l~~~~~ 686 (908)
|+ +.|.+|.+....+
T Consensus 354 ragrtg~aYs~V~~~~ 369 (529)
T KOG0337|consen 354 RAGRTGRAYSLVASTD 369 (529)
T ss_pred hccccceEEEEEeccc
Confidence 99 6899999987653
No 69
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.97 E-value=2.4e-30 Score=297.26 Aligned_cols=461 Identities=18% Similarity=0.198 Sum_probs=294.8
Q ss_pred HHHHHHHHHHH-hCCeEEEEecCCCCccchHHHHHHHHHHhcc-----CCCCcEEEEEcccHHHHHHHHHHHHHHhCCCC
Q 002552 285 KMKAEFLKAVA-ENQVLVVSGETGCGKTTQLPQFILEEELSSL-----RGADCNIICTQPRRISAISVAARVSSERGENL 358 (908)
Q Consensus 285 ~~Q~~~i~~i~-~~~~vii~a~TGSGKTt~~~~~il~~~~~~~-----~~~~~~ilv~~P~r~la~qi~~rv~~~~~~~~ 358 (908)
.+|.++.+.+. ++.|.|||||||||||-.+.+-||..+-.+. ....-+|++++|+++||.+++..+.+.+. .+
T Consensus 113 ~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~kkl~-~~ 191 (1230)
T KOG0952|consen 113 RIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFSKKLA-PL 191 (1230)
T ss_pred HHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHhhhcc-cc
Confidence 58999999875 5779999999999999999999988765311 12356899999999999999998877654 34
Q ss_pred CCEEeEEeeccccC---CCCCcEEEEchHHHHHHHh---cCC-CCCcceEEEEechh----ccchhhHHHHHHHHHHC-c
Q 002552 359 GETVGYQIRLESKR---SAQTRLLFCTTGVLLRQLV---EDP-DLSCVSHLLVDEIH----ERGMNEDFLLIILRDLL-P 426 (908)
Q Consensus 359 g~~vg~~~~~~~~~---~~~~~Iiv~T~g~Ll~~l~---~~~-~l~~~~~iIiDEaH----eR~~~~d~ll~~lk~~~-~ 426 (908)
|..|+--....... -..|+|+|+||+...-.-+ .+. .++.+.+|||||+| +||.-.+.+.....++. .
T Consensus 192 gi~v~ELTGD~ql~~tei~~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlLhd~RGpvlEtiVaRtlr~ves 271 (1230)
T KOG0952|consen 192 GISVRELTGDTQLTKTEIADTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLLHDDRGPVLETIVARTLRLVES 271 (1230)
T ss_pred cceEEEecCcchhhHHHHHhcCEEEecccceeeeeeeeccchhhhhheeeEEeeeehhhcCcccchHHHHHHHHHHHHHh
Confidence 55555433222111 2479999999997643222 222 67889999999999 57776666655544333 3
Q ss_pred cCCCCcEEEecccC-ChHHHHhhhCCCC---ccccCCcc--ccceeeehhhHHHhhhcccCcccccccccccccccccch
Q 002552 427 RRPDLRLILMSATI-NADLFSKYFGNAP---TVHIPGLT--FPVTDLFLEDVLEKTRYKMNSKLDSFQGNSRRSRRQDSK 500 (908)
Q Consensus 427 ~~~~~qiIlmSAT~-~~~~~~~~f~~~~---~i~v~~~~--~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (908)
....+|+|++|||+ |-++++.|++..+ ++...++. .|++..++- .. .. ....+
T Consensus 272 sqs~IRivgLSATlPN~eDvA~fL~vn~~~glfsFd~~yRPvpL~~~~iG---------~k----------~~--~~~~~ 330 (1230)
T KOG0952|consen 272 SQSMIRIVGLSATLPNYEDVARFLRVNPYAGLFSFDQRYRPVPLTQGFIG---------IK----------GK--KNRQQ 330 (1230)
T ss_pred hhhheEEEEeeccCCCHHHHHHHhcCCCccceeeecccccccceeeeEEe---------ee----------cc--cchhh
Confidence 44578999999998 5678999998643 23333332 233332221 00 00 00000
Q ss_pred hhhHhhhhhcccccccccchhhhhHhhHhhhhhhhhchHHHHHHHHHHHhccCCCcEEEecCCHHHHHHHHHHHHhccc-
Q 002552 501 KDHLTALFEDVDIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICRHEGDGAILVFLTGWNDISKLLDQIKVNKF- 579 (908)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~- 579 (908)
...+|.....++++.+ ..+.+++|||+++.+....++.|.+...
T Consensus 331 --------------------------------~~~~d~~~~~kv~e~~---~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~ 375 (1230)
T KOG0952|consen 331 --------------------------------KKNIDEVCYDKVVEFL---QEGHQVLVFVHSRNETIRTAKKLRERAET 375 (1230)
T ss_pred --------------------------------hhhHHHHHHHHHHHHH---HcCCeEEEEEecChHHHHHHHHHHHHHHh
Confidence 0011111222333333 3467899999999999999998875321
Q ss_pred --------CCCCC-------ceEEEeccCCCChHhHHhhhCCCCCCCcEEEEeccccccccCCCCeEEEEeCCCccceee
Q 002552 580 --------LGDPN-------KFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETSY 644 (908)
Q Consensus 580 --------~~~~~-------~~~v~~lH~~l~~~er~~v~~~f~~g~~kIlvaT~iae~GidIp~v~~VId~g~~k~~~y 644 (908)
.+... ...+..+|++|..++|..+.+.|..|.++|++||.+++.|+++|+-.++|- .+..|
T Consensus 376 ~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~~G~i~vL~cTaTLAwGVNLPA~aViIK----GT~~y 451 (1230)
T KOG0952|consen 376 NGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFKEGHIKVLCCTATLAWGVNLPAYAVIIK----GTQVY 451 (1230)
T ss_pred cCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHHhcCCceEEEecceeeeccCCcceEEEec----CCccc
Confidence 11111 267888999999999999999999999999999999999999998777664 35568
Q ss_pred ccccCccccccccccHhhHHHhccccCCC---CCcEEEEecChh---hHhhcCCCCCC---------------cccc---
Q 002552 645 DALNKLACLLPSWISKASAHQRRGRAGRV---QPGVCYKLYPRI---IHDAMLPYQLP---------------EILR--- 700 (908)
Q Consensus 645 d~~~~~~~l~~~~iS~~~~~QR~GRaGR~---~~G~~~~l~~~~---~~~~l~~~~~p---------------ei~r--- 700 (908)
|+..+.-. -.+..+.+|..|||||+ ..|..+.+-+.+ .|..|...+.| ||.-
T Consensus 452 dsskg~f~----dlgilDVlQifGRAGRPqFd~~G~giIiTt~dkl~~Y~sLl~~~~piES~~~~~L~dnLnAEi~LgTV 527 (1230)
T KOG0952|consen 452 DSSKGSFV----DLGILDVLQIFGRAGRPQFDSSGEGIIITTRDKLDHYESLLTGQNPIESQLLPCLIDNLNAEISLGTV 527 (1230)
T ss_pred ccccCcee----eehHHHHHHHHhccCCCCCCCCceEEEEecccHHHHHHHHHcCCChhHHHHHHHHHHhhhhheeecee
Confidence 88765221 22556999999999999 568888777764 45555544333 1111
Q ss_pred CchHHHHHHHhhc------CCCchhhh--hhccCC-CCCH-----HHHHHHHHHHHHcCCC--CCCC---CcCccccccc
Q 002552 701 TPLQELCLHIKSL------QLGTVGSF--LSKALQ-PPDP-----LAVQNAIELLKTIGAL--DDME---NLTPLGRHLC 761 (908)
Q Consensus 701 ~~L~~~~L~~~~l------~~~~~~~f--l~~~~~-~p~~-----~~v~~al~~L~~~gal--~~~~---~lT~lG~~~~ 761 (908)
+++++.+--++.- +-+. ..+ -.+.+. -|.. +-+..++..|.....+ |... ..|++||.++
T Consensus 528 t~VdeAVeWL~yTylYVRm~KNP-~~Ygi~~~~l~~dp~l~s~~~~l~~~~~~~L~~~qmi~~D~~t~~~~stdlGR~aS 606 (1230)
T KOG0952|consen 528 TNVDEAVEWLKYTYLYVRMRKNP-MAYGISYEELEPDPRLESHRRELCLVAAMELDKVQMIRFDERTGYLKSTDLGRVAS 606 (1230)
T ss_pred ecHHHHHHHhhceeEEEEeccCh-HHhhhhhhcccCCchHHHHHHHHHHHHHHHhhhhheEEEecccceEcccchhhhhh
Confidence 1222222222110 0000 000 001111 1211 2344555555555333 3322 5899999999
Q ss_pred cccCCchhhHHHHHhhh-ccChHHHHHHHhhhccCCCCCCccccHHHHHHH
Q 002552 762 TLPVDPNIGKMLLMGAI-FQCLNPALTIAAALAHRNPFVLPVNMQKEVDEA 811 (908)
Q Consensus 762 ~lpl~p~~~k~l~~~~~-~~c~~~~l~i~a~l~~~~~f~~p~~~~~~~~~~ 811 (908)
.++|.-+.-+.++.... +--.+++|.|+|....-+-.-..-+++++.+..
T Consensus 607 ~yYik~ETme~~nn~~k~~~se~~iL~lis~aeEfs~ik~R~eE~k~l~el 657 (1230)
T KOG0952|consen 607 NYYIKYETMETFNNLPKSFYSEDDILALISMAEEFSQIKVREEEKKELKEL 657 (1230)
T ss_pred hhhhhhHHHHHHHhcccccCCHHHHHHHHHhhHhhhhhhhhhhhHHHHHHH
Confidence 99999999999999887 778889998888665433322223344444433
No 70
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.97 E-value=2.2e-30 Score=291.42 Aligned_cols=299 Identities=20% Similarity=0.256 Sum_probs=193.3
Q ss_pred eEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCCEEeEEe------ecc---
Q 002552 299 VLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLGETVGYQI------RLE--- 369 (908)
Q Consensus 299 ~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~~~~~~~g~~vg~~~------~~~--- 369 (908)
+++|+||||||||+++++++++.... ....+++|++|+|+|+.|+++++...++..++...+... ..+
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~---~~~~~ii~v~P~~~L~~q~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 77 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKS---QKADRVIIALPTRATINAMYRRAKELFGSNLGLLHSSSSFKRIKEMGDSEE 77 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhh---CCCCeEEEEeehHHHHHHHHHHHHHHhCcccEEeeccHHHHHHhccCCchh
Confidence 58999999999999999999987532 234589999999999999999999887754432211100 000
Q ss_pred --c---------cCCCCCcEEEEchHHHHHHHhcCC-----CCC--cceEEEEechhccchh--hHHHHHHHHHHCccCC
Q 002552 370 --S---------KRSAQTRLLFCTTGVLLRQLVEDP-----DLS--CVSHLLVDEIHERGMN--EDFLLIILRDLLPRRP 429 (908)
Q Consensus 370 --~---------~~~~~~~Iiv~T~g~Ll~~l~~~~-----~l~--~~~~iIiDEaHeR~~~--~d~ll~~lk~~~~~~~ 429 (908)
. .......|+++||+.++..+.... .+. ..++|||||+|.. .+ .+++..+++.+. ..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~-~~~~~~~l~~~l~~l~--~~ 154 (358)
T TIGR01587 78 FEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFY-DEYTLALILAVLEVLK--DN 154 (358)
T ss_pred HHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCC-CHHHHHHHHHHHHHHH--Hc
Confidence 0 001236799999999998876521 111 2389999999953 33 334555555443 34
Q ss_pred CCcEEEecccCChHHHHhhhCCCCccccCCccccceeeehhhHHHhhhcccCcccccccccccccccccchhhhHhhhhh
Q 002552 430 DLRLILMSATINADLFSKYFGNAPTVHIPGLTFPVTDLFLEDVLEKTRYKMNSKLDSFQGNSRRSRRQDSKKDHLTALFE 509 (908)
Q Consensus 430 ~~qiIlmSAT~~~~~~~~~f~~~~~i~v~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (908)
+.|+|+||||++ +.+.+|+......... ...+.... .. ...+... . ....
T Consensus 155 ~~~~i~~SATlp-~~l~~~~~~~~~~~~~-~~~~~~~~--~~---~~~~~~~-----~--------~~~~---------- 204 (358)
T TIGR01587 155 DVPILLMSATLP-KFLKEYAEKIGYVEFN-EPLDLKEE--RR---FERHRFI-----K--------IESD---------- 204 (358)
T ss_pred CCCEEEEecCch-HHHHHHHhcCCCcccc-cCCCCccc--cc---cccccce-----e--------eccc----------
Confidence 689999999997 4456665432111000 00000000 00 0000000 0 0000
Q ss_pred cccccccccchhhhhHhhHhhhhhhhhchHHHHHHHHHHHhccCCCcEEEecCCHHHHHHHHHHHHhcccCCCCCceEEE
Q 002552 510 DVDIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICRHEGDGAILVFLTGWNDISKLLDQIKVNKFLGDPNKFLVL 589 (908)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~v~ 589 (908)
...+...+..++..+ ..++++||||+++++++.+++.|.+.. ....+.
T Consensus 205 ------------------------~~~~~~~l~~l~~~~---~~~~~~lVf~~t~~~~~~~~~~L~~~~-----~~~~~~ 252 (358)
T TIGR01587 205 ------------------------KVGEISSLERLLEFI---KKGGKIAIIVNTVDRAQEFYQQLKENA-----PEEEIM 252 (358)
T ss_pred ------------------------cccCHHHHHHHHHHh---hCCCeEEEEECCHHHHHHHHHHHHhhc-----CCCeEE
Confidence 000011122222221 346799999999999999999998642 234689
Q ss_pred eccCCCChHhHHh----hhCCCCCCCcEEEEeccccccccCCCCeEEEEeCCCccceeeccccCccccccccccHhhHHH
Q 002552 590 PLHGSMPTINQRE----IFDRPPPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETSYDALNKLACLLPSWISKASAHQ 665 (908)
Q Consensus 590 ~lH~~l~~~er~~----v~~~f~~g~~kIlvaT~iae~GidIp~v~~VId~g~~k~~~yd~~~~~~~l~~~~iS~~~~~Q 665 (908)
.+||++++.+|.+ +++.|++|+.+|||||+++|+||||+ +++||++.. +.++|+|
T Consensus 253 ~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~~~~--------------------~~~~~iq 311 (358)
T TIGR01587 253 LLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMITELA--------------------PIDSLIQ 311 (358)
T ss_pred EEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEEEcCC--------------------CHHHHHH
Confidence 9999999999976 48899999999999999999999996 778886533 3348999
Q ss_pred hccccCCCC--C---cEEEEecChhh
Q 002552 666 RRGRAGRVQ--P---GVCYKLYPRII 686 (908)
Q Consensus 666 R~GRaGR~~--~---G~~~~l~~~~~ 686 (908)
|+||+||.+ . |..|.++....
T Consensus 312 r~GR~gR~g~~~~~~~~~~v~~~~~~ 337 (358)
T TIGR01587 312 RLGRLHRYGRKNGENFEVYIITIAPE 337 (358)
T ss_pred HhccccCCCCCCCCCCeEEEEeecCC
Confidence 999999972 2 37777776543
No 71
>PRK09401 reverse gyrase; Reviewed
Probab=99.97 E-value=1.7e-29 Score=313.63 Aligned_cols=298 Identities=12% Similarity=0.119 Sum_probs=193.0
Q ss_pred HHHhhcCCCchHHHHHHHHHHHhCCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHH
Q 002552 274 MLSFREKLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSE 353 (908)
Q Consensus 274 ~~~~r~~lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~~ 353 (908)
+++..-...++++|.++++.++.+++++++||||||||+ +.+++...... .+++++|++|||+||.|+++++.+.
T Consensus 72 ~f~~~~G~~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~-f~l~~~~~l~~----~g~~alIL~PTreLa~Qi~~~l~~l 146 (1176)
T PRK09401 72 FFKKKTGSKPWSLQRTWAKRLLLGESFAIIAPTGVGKTT-FGLVMSLYLAK----KGKKSYIIFPTRLLVEQVVEKLEKF 146 (1176)
T ss_pred HHHHhcCCCCcHHHHHHHHHHHCCCcEEEEcCCCCCHHH-HHHHHHHHHHh----cCCeEEEEeccHHHHHHHHHHHHHH
Confidence 444444458899999999999999999999999999996 44444333221 2468899999999999999998765
Q ss_pred hCCCCCCEEeEEeecc-----------cc-CCCCCcEEEEchHHHHHHHhcCCCCCcceEEEEechhccchh--------
Q 002552 354 RGENLGETVGYQIRLE-----------SK-RSAQTRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMN-------- 413 (908)
Q Consensus 354 ~~~~~g~~vg~~~~~~-----------~~-~~~~~~Iiv~T~g~Ll~~l~~~~~l~~~~~iIiDEaHeR~~~-------- 413 (908)
.. ..+..+....... .. ....++|+|+|||+|.+.+. ...+.++++||||||| +.++
T Consensus 147 ~~-~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~-~l~~~~~~~lVvDEaD-~~L~~~k~id~~ 223 (1176)
T PRK09401 147 GE-KVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD-ELPKKKFDFVFVDDVD-AVLKSSKNIDKL 223 (1176)
T ss_pred hh-hcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH-hccccccCEEEEEChH-HhhhcccchhhH
Confidence 43 3333322111110 01 12358999999999999876 2245669999999999 4342
Q ss_pred ---hHHH----HHHHHHHCc---------------------cCCCCcEEEecccCChHHH-HhhhCCCCccccCCccc--
Q 002552 414 ---EDFL----LIILRDLLP---------------------RRPDLRLILMSATINADLF-SKYFGNAPTVHIPGLTF-- 462 (908)
Q Consensus 414 ---~d~l----l~~lk~~~~---------------------~~~~~qiIlmSAT~~~~~~-~~~f~~~~~i~v~~~~~-- 462 (908)
++|. ..+++.+-. ...+.|++++|||+++... ..+|.+.-.+.+.....
T Consensus 224 l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~~l~~~ll~~~v~~~~~~~ 303 (1176)
T PRK09401 224 LYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRVKLFRELLGFEVGSPVFYL 303 (1176)
T ss_pred HHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHHHHhhccceEEecCccccc
Confidence 2231 111111100 0116789999999976422 22333222222221110
Q ss_pred -cceeeehhhHHHhhhcccCcccccccccccccccccchhhhHhhhhhcccccccccchhhhhHhhHhhhhhhhhchHHH
Q 002552 463 -PVTDLFLEDVLEKTRYKMNSKLDSFQGNSRRSRRQDSKKDHLTALFEDVDIDSNYKNYRASTRASLEAWSAEQIDLGLV 541 (908)
Q Consensus 463 -~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li 541 (908)
.+...|... + + .
T Consensus 304 rnI~~~yi~~-----------------------------------------------------------------~-~-k 316 (1176)
T PRK09401 304 RNIVDSYIVD-----------------------------------------------------------------E-D-S 316 (1176)
T ss_pred CCceEEEEEc-----------------------------------------------------------------c-c-H
Confidence 111111100 0 0 0
Q ss_pred HHHHHHHHhccCCCcEEEecCCHHH---HHHHHHHHHhcccCCCCCceEEEeccCCCChHhHHhhhCCCCCCCcEEEEe-
Q 002552 542 ESTIEYICRHEGDGAILVFLTGWND---ISKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLA- 617 (908)
Q Consensus 542 ~~~l~~i~~~~~~g~iLVF~~~~~~---i~~l~~~L~~~~~~~~~~~~~v~~lH~~l~~~er~~v~~~f~~g~~kIlva- 617 (908)
...+..+.+.. +..+||||+++.. ++.+++.|.. .++.+..+||+| ++.++.|++|+.+||||
T Consensus 317 ~~~L~~ll~~l-~~~~LIFv~t~~~~~~ae~l~~~L~~-------~gi~v~~~hg~l-----~~~l~~F~~G~~~VLVat 383 (1176)
T PRK09401 317 VEKLVELVKRL-GDGGLIFVPSDKGKEYAEELAEYLED-------LGINAELAISGF-----ERKFEKFEEGEVDVLVGV 383 (1176)
T ss_pred HHHHHHHHHhc-CCCEEEEEecccChHHHHHHHHHHHH-------CCCcEEEEeCcH-----HHHHHHHHCCCCCEEEEe
Confidence 11122222222 3468999999777 9999999998 578899999999 23459999999999999
Q ss_pred ---ccccccccCCCC-eEEEEeCCCccceeeccccCccccccccccHhhHHHhccccC
Q 002552 618 ---TNIAESSITIDD-VVYVVDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAG 671 (908)
Q Consensus 618 ---T~iae~GidIp~-v~~VId~g~~k~~~yd~~~~~~~l~~~~iS~~~~~QR~GRaG 671 (908)
||+|+||||||+ |+|||++|.|+-..- - + -...+.||.||+-
T Consensus 384 as~tdv~aRGIDiP~~IryVI~y~vP~~~~~-~--~---------~~~~~~~~~~r~~ 429 (1176)
T PRK09401 384 ASYYGVLVRGIDLPERIRYAIFYGVPKFKFS-L--E---------EELAPPFLLLRLL 429 (1176)
T ss_pred cCCCCceeecCCCCcceeEEEEeCCCCEEEe-c--c---------ccccCHHHHHHHH
Confidence 699999999999 899999999994330 0 0 1136778888873
No 72
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.97 E-value=7.6e-29 Score=288.76 Aligned_cols=326 Identities=14% Similarity=0.101 Sum_probs=204.7
Q ss_pred CCCchHHHHHHHHHHHhCCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCC
Q 002552 280 KLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLG 359 (908)
Q Consensus 280 ~lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~~~~~~~g 359 (908)
...++++|.++++.++.+++.++++|||+|||..+...+ ...... ...++||++||++|+.|+.+++.+.......
T Consensus 112 ~~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~-~~~~~~---~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~ 187 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLS-RYYLEN---YEGKVLIIVPTTSLVTQMIDDFVDYRLFPRE 187 (501)
T ss_pred cCCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHH-HHHHhc---CCCeEEEEECcHHHHHHHHHHHHHhcccccc
Confidence 367889999999999999999999999999997665432 222221 1348999999999999999999775533221
Q ss_pred CEEeEEeeccccCCCCCcEEEEchHHHHHHHhcCCCCCcceEEEEechhccchhhHHHHHHHHHHCccCCCCcEEEeccc
Q 002552 360 ETVGYQIRLESKRSAQTRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILMSAT 439 (908)
Q Consensus 360 ~~vg~~~~~~~~~~~~~~Iiv~T~g~Ll~~l~~~~~l~~~~~iIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiIlmSAT 439 (908)
...+. .... ......+|+|+|++.|.+... .+++++++|||||||+ ..... +..+++.+ .+..++++||||
T Consensus 188 ~~~~i-~~g~-~~~~~~~I~VaT~qsl~~~~~--~~~~~~~~iIvDEaH~-~~~~~-~~~il~~~---~~~~~~lGLTAT 258 (501)
T PHA02558 188 AMHKI-YSGT-AKDTDAPIVVSTWQSAVKQPK--EWFDQFGMVIVDECHL-FTGKS-LTSIITKL---DNCKFKFGLTGS 258 (501)
T ss_pred ceeEE-ecCc-ccCCCCCEEEeeHHHHhhchh--hhccccCEEEEEchhc-ccchh-HHHHHHhh---hccceEEEEecc
Confidence 11111 1111 112357899999999986542 2678999999999995 33322 23333332 234579999999
Q ss_pred CChHH-----HHhhhCCCCccccCCccccceeeehhhHHHhhhcccCcccccccccccccccccchhhhHhhhhhccccc
Q 002552 440 INADL-----FSKYFGNAPTVHIPGLTFPVTDLFLEDVLEKTRYKMNSKLDSFQGNSRRSRRQDSKKDHLTALFEDVDID 514 (908)
Q Consensus 440 ~~~~~-----~~~~f~~~~~i~v~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (908)
+.... +..+|+... .. +. ..+.... .+............ ....+ ... ...
T Consensus 259 p~~~~~~~~~~~~~fG~i~-~~-------v~---~~~li~~-g~l~~~~~~~v~~~-------~~~~~-~~~-~~~---- 313 (501)
T PHA02558 259 LRDGKANILQYVGLFGDIF-KP-------VT---TSQLMEE-GQVTDLKINSIFLR-------YPDED-RVK-LKG---- 313 (501)
T ss_pred CCCccccHHHHHHhhCCce-EE-------ec---HHHHHhC-CCcCCceEEEEecc-------CCHHH-hhh-hcc----
Confidence 85322 233454311 00 00 0011000 00000000000000 00000 000 000
Q ss_pred ccccchhhhhHhhHhhhhhhhhchHHHHHHHHHHHhccCCCcEEEecCCHHHHHHHHHHHHhcccCCCCCceEEEeccCC
Q 002552 515 SNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICRHEGDGAILVFLTGWNDISKLLDQIKVNKFLGDPNKFLVLPLHGS 594 (908)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lH~~ 594 (908)
. .|.. .+...........++..++..+. ..+.++|||+...++++.+++.|.. .+..+..+||+
T Consensus 314 ~---~~~~----~~~~l~~~~~Rn~~I~~~~~~~~--~~~~~~lV~~~~~~h~~~L~~~L~~-------~g~~v~~i~G~ 377 (501)
T PHA02558 314 E---DYQE----EIKYITSHTKRNKWIANLALKLA--KKGENTFVMFKYVEHGKPLYEMLKK-------VYDKVYYVSGE 377 (501)
T ss_pred c---chHH----HHHHHhccHHHHHHHHHHHHHHH--hcCCCEEEEEEEHHHHHHHHHHHHH-------cCCCEEEEeCC
Confidence 0 0000 00000000111223444444443 2456799999999999999999987 45678999999
Q ss_pred CChHhHHhhhCCCCCCCcEEEEec-cccccccCCCCeEEEEeCCCccceeeccccCccccccccccHhhHHHhccccCCC
Q 002552 595 MPTINQREIFDRPPPNKRKIVLAT-NIAESSITIDDVVYVVDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRV 673 (908)
Q Consensus 595 l~~~er~~v~~~f~~g~~kIlvaT-~iae~GidIp~v~~VId~g~~k~~~yd~~~~~~~l~~~~iS~~~~~QR~GRaGR~ 673 (908)
+++++|+.+++.|+.|...||||| +++++|+|+|++++||.+..++ |+..|+||+||++|.
T Consensus 378 ~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~Dip~ld~vIl~~p~~------------------s~~~~~QriGR~~R~ 439 (501)
T PHA02558 378 VDTEDRNEMKKIAEGGKGIIIVASYGVFSTGISIKNLHHVIFAHPSK------------------SKIIVLQSIGRVLRK 439 (501)
T ss_pred CCHHHHHHHHHHHhCCCCeEEEEEcceeccccccccccEEEEecCCc------------------chhhhhhhhhccccC
Confidence 999999999999999999999998 8999999999999999988887 677999999999999
Q ss_pred CCcE
Q 002552 674 QPGV 677 (908)
Q Consensus 674 ~~G~ 677 (908)
.+|+
T Consensus 440 ~~~K 443 (501)
T PHA02558 440 HGSK 443 (501)
T ss_pred CCCC
Confidence 6654
No 73
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.96 E-value=4.5e-29 Score=278.18 Aligned_cols=306 Identities=14% Similarity=0.167 Sum_probs=185.5
Q ss_pred HHHHHHHHHHhCC--eEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCC---CCC
Q 002552 286 MKAEFLKAVAENQ--VLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGEN---LGE 360 (908)
Q Consensus 286 ~Q~~~i~~i~~~~--~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~~~~~~---~g~ 360 (908)
+|.++++++.+++ +++++||||||||.++.++++.. ..+++++.|+++|+.|+++++...+... .+.
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~--------~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~ 72 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHG--------ENDTIALYPTNALIEDQTEAIKEFVDVFKPERDV 72 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHc--------CCCEEEEeChHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 4889999999876 48899999999999998887742 2357888899999999999988775211 111
Q ss_pred EEeEEeec---c-----------------------ccCCCCCcEEEEchHHHHHHHhc---CC------CCCcceEEEEe
Q 002552 361 TVGYQIRL---E-----------------------SKRSAQTRLLFCTTGVLLRQLVE---DP------DLSCVSHLLVD 405 (908)
Q Consensus 361 ~vg~~~~~---~-----------------------~~~~~~~~Iiv~T~g~Ll~~l~~---~~------~l~~~~~iIiD 405 (908)
.+...... + ......+.|+++||++|..++.. .+ .+.++++||||
T Consensus 73 ~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~D 152 (357)
T TIGR03158 73 NLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIFD 152 (357)
T ss_pred eEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEEEEe
Confidence 11111000 0 00012567888889998765543 12 26899999999
Q ss_pred chhccchhhH-HH---HHHHHHHCccCCCCcEEEecccCChHHHH---hh-hCCCCccccCCccccceeeehhhHHHh--
Q 002552 406 EIHERGMNED-FL---LIILRDLLPRRPDLRLILMSATINADLFS---KY-FGNAPTVHIPGLTFPVTDLFLEDVLEK-- 475 (908)
Q Consensus 406 EaHeR~~~~d-~l---l~~lk~~~~~~~~~qiIlmSAT~~~~~~~---~~-f~~~~~i~v~~~~~~v~~~~l~~~~~~-- 475 (908)
|+|..+.... .+ +.....+.......++|+||||++..... +. +.+.++..++|+.+.-... .+....
T Consensus 153 E~H~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~--~~~~~~~~ 230 (357)
T TIGR03158 153 EFHLYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDN--PELEADNK 230 (357)
T ss_pred cccccCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceeeeecCcccccCCC--hhhhcccc
Confidence 9998553221 22 23333222222347999999999876322 22 1234555555552211000 000000
Q ss_pred -hhcccCcccccccccccccccccchhhhHhhhhhcccccccccchhhhhHhhHhhhhhhhhchHHHHHHHHHHHhccCC
Q 002552 476 -TRYKMNSKLDSFQGNSRRSRRQDSKKDHLTALFEDVDIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICRHEGD 554 (908)
Q Consensus 476 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~~~~ 554 (908)
..+... ..... . .+.. ... +... ....+...+....+...+
T Consensus 231 ~~~~~~~--~~~i~------------------------~--~~~~-~~~-------~~~~--~l~~l~~~i~~~~~~~~~ 272 (357)
T TIGR03158 231 TQSFRPV--LPPVE------------------------L--ELIP-APD-------FKEE--ELSELAEEVIERFRQLPG 272 (357)
T ss_pred cccccee--ccceE------------------------E--EEEe-CCc-------hhHH--HHHHHHHHHHHHHhccCC
Confidence 000000 00000 0 0000 000 0000 000011222222333456
Q ss_pred CcEEEecCCHHHHHHHHHHHHhcccCCCCCceEEEeccCCCChHhHHhhhCCCCCCCcEEEEeccccccccCCCCeEEEE
Q 002552 555 GAILVFLTGWNDISKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVV 634 (908)
Q Consensus 555 g~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lH~~l~~~er~~v~~~f~~g~~kIlvaT~iae~GidIp~v~~VI 634 (908)
+++||||++++.++.+++.|.+.. ..+.+..+||.+++.+|+++. +..|||||+++|+|||||++ +||
T Consensus 273 ~k~LIf~nt~~~~~~l~~~L~~~~-----~~~~~~~l~g~~~~~~R~~~~------~~~iLVaTdv~~rGiDi~~~-~vi 340 (357)
T TIGR03158 273 ERGAIILDSLDEVNRLSDLLQQQG-----LGDDIGRITGFAPKKDRERAM------QFDILLGTSTVDVGVDFKRD-WLI 340 (357)
T ss_pred CeEEEEECCHHHHHHHHHHHhhhC-----CCceEEeeecCCCHHHHHHhc------cCCEEEEecHHhcccCCCCc-eEE
Confidence 789999999999999999998632 245688899999999997654 67899999999999999987 555
Q ss_pred eCCCccceeeccccCccccccccccHhhHHHhccccC
Q 002552 635 DCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAG 671 (908)
Q Consensus 635 d~g~~k~~~yd~~~~~~~l~~~~iS~~~~~QR~GRaG 671 (908)
++ |. +.++|+||+||+|
T Consensus 341 -~~-p~------------------~~~~yiqR~GR~g 357 (357)
T TIGR03158 341 -FS-AR------------------DAAAFWQRLGRLG 357 (357)
T ss_pred -EC-CC------------------CHHHHhhhcccCC
Confidence 33 54 5669999999998
No 74
>PRK13766 Hef nuclease; Provisional
Probab=99.96 E-value=2.3e-28 Score=301.60 Aligned_cols=374 Identities=17% Similarity=0.195 Sum_probs=226.4
Q ss_pred CCCchHHHHHHHHHHHhCCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCC
Q 002552 280 KLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLG 359 (908)
Q Consensus 280 ~lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~~~~~~~g 359 (908)
.+.+.+||.+++..++.+ ++++++|||+|||.++.+++...+. ....++||++||++|+.|+++.+.+.++....
T Consensus 13 ~~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~----~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~ 87 (773)
T PRK13766 13 TIEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLH----KKGGKVLILAPTKPLVEQHAEFFRKFLNIPEE 87 (773)
T ss_pred cCCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHH----hCCCeEEEEeCcHHHHHHHHHHHHHHhCCCCc
Confidence 356678999999988877 7999999999999988887776652 23458999999999999999999887664311
Q ss_pred CEEeEEeecc--c--cCCCCCcEEEEchHHHHHHHhcCC-CCCcceEEEEechhccchhhHHHHHHHHHHCccCCCCcEE
Q 002552 360 ETVGYQIRLE--S--KRSAQTRLLFCTTGVLLRQLVEDP-DLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLI 434 (908)
Q Consensus 360 ~~vg~~~~~~--~--~~~~~~~Iiv~T~g~Ll~~l~~~~-~l~~~~~iIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiI 434 (908)
..+.+.-... . ....+.+|+|+||+++...+..+. .+.++++||||||| |.........+.+......+..+++
T Consensus 88 ~v~~~~g~~~~~~r~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH-~~~~~~~~~~i~~~~~~~~~~~~il 166 (773)
T PRK13766 88 KIVVFTGEVSPEKRAELWEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAH-RAVGNYAYVYIAERYHEDAKNPLVL 166 (773)
T ss_pred eEEEEeCCCCHHHHHHHHhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCc-cccccccHHHHHHHHHhcCCCCEEE
Confidence 2222211110 0 112357899999999988877665 78899999999999 4333322333444455555667899
Q ss_pred EecccCC--hHHHHhhhCCCC--ccccCCcc--------ccceeeeh----hh-----------HHHh----hh-cccCc
Q 002552 435 LMSATIN--ADLFSKYFGNAP--TVHIPGLT--------FPVTDLFL----ED-----------VLEK----TR-YKMNS 482 (908)
Q Consensus 435 lmSAT~~--~~~~~~~f~~~~--~i~v~~~~--------~~v~~~~l----~~-----------~~~~----~~-~~~~~ 482 (908)
+||||+. .+.+...+.+.. .+.+..+. .+....++ .+ ++.. .. .....
T Consensus 167 ~lTaTP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~~l~~~~~~~ 246 (773)
T PRK13766 167 GLTASPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRLKKLKELGVIV 246 (773)
T ss_pred EEEcCCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHCCCcc
Confidence 9999983 233333332211 11111110 11111110 00 0000 00 00000
Q ss_pred cccccccccccc------ccccchhhh--------H---------hhhhhcccccccccchhhhhH--------------
Q 002552 483 KLDSFQGNSRRS------RRQDSKKDH--------L---------TALFEDVDIDSNYKNYRASTR-------------- 525 (908)
Q Consensus 483 ~~~~~~~~~~~~------~~~~~~~~~--------~---------~~~~~~~~~~~~~~~~~~~~~-------------- 525 (908)
............ .......++ + ..+.+..+... +..|-....
T Consensus 247 ~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~-~~~y~~~l~~~~~~~~~~~~~~~ 325 (773)
T PRK13766 247 SISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEA-LRRYLERLREEARSSGGSKASKR 325 (773)
T ss_pred cCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHH-HHHHHHHHHhhccccCCcHHHHH
Confidence 000000000000 000000000 0 00000000000 000000000
Q ss_pred --------h---hHhhhhhhhhchHHHHHHHHHHHhccCCCcEEEecCCHHHHHHHHHHHHhcccCCCCCceEEEeccCC
Q 002552 526 --------A---SLEAWSAEQIDLGLVESTIEYICRHEGDGAILVFLTGWNDISKLLDQIKVNKFLGDPNKFLVLPLHGS 594 (908)
Q Consensus 526 --------~---~~~~~~~~~~~~~li~~~l~~i~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lH~~ 594 (908)
. .+..........+.+..++..+.....++++||||++++.++.+++.|.. .++.+..+||.
T Consensus 326 l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~-------~~~~~~~~~g~ 398 (773)
T PRK13766 326 LVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEK-------EGIKAVRFVGQ 398 (773)
T ss_pred HHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHh-------CCCceEEEEcc
Confidence 0 00000011112344555565555556778999999999999999999976 34455667665
Q ss_pred --------CChHhHHhhhCCCCCCCcEEEEeccccccccCCCCeEEEEeCCCccceeeccccCccccccccccHhhHHHh
Q 002552 595 --------MPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETSYDALNKLACLLPSWISKASAHQR 666 (908)
Q Consensus 595 --------l~~~er~~v~~~f~~g~~kIlvaT~iae~GidIp~v~~VId~g~~k~~~yd~~~~~~~l~~~~iS~~~~~QR 666 (908)
|++.+|..+++.|++|..+|||||+++++|+|+|++++||+|+.+. +...|+||
T Consensus 399 ~~~~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd~~~------------------s~~r~iQR 460 (773)
T PRK13766 399 ASKDGDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEPVP------------------SEIRSIQR 460 (773)
T ss_pred ccccccCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeCCCC------------------CHHHHHHH
Confidence 9999999999999999999999999999999999999999998877 55589999
Q ss_pred ccccCCCCCcEEEEecChh
Q 002552 667 RGRAGRVQPGVCYKLYPRI 685 (908)
Q Consensus 667 ~GRaGR~~~G~~~~l~~~~ 685 (908)
+||+||.++|.+|.|+++.
T Consensus 461 ~GR~gR~~~~~v~~l~~~~ 479 (773)
T PRK13766 461 KGRTGRQEEGRVVVLIAKG 479 (773)
T ss_pred hcccCcCCCCEEEEEEeCC
Confidence 9999999999999999753
No 75
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.96 E-value=1.2e-28 Score=279.33 Aligned_cols=301 Identities=18% Similarity=0.181 Sum_probs=210.7
Q ss_pred HHHHHHHHHHHhCCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCCEEeE
Q 002552 285 KMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLGETVGY 364 (908)
Q Consensus 285 ~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~~~~~~~g~~vg~ 364 (908)
+-|.++|+.+++++++++..|||.|||.+|-+|.+-. .+..||+.|.-.|-....+.+.. .|. .+.+
T Consensus 20 ~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~--------~G~TLVVSPLiSLM~DQV~~l~~-~Gi----~A~~ 86 (590)
T COG0514 20 PGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL--------EGLTLVVSPLISLMKDQVDQLEA-AGI----RAAY 86 (590)
T ss_pred CCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc--------CCCEEEECchHHHHHHHHHHHHH-cCc----eeeh
Confidence 3589999999999999999999999998877776543 23789999999998776666633 232 2211
Q ss_pred E----eeccc------cCCCCCcEEEEchHHHHHHHhcCC-CCCcceEEEEechhccc-hhhHHHHHH--HHHHCccCCC
Q 002552 365 Q----IRLES------KRSAQTRLLFCTTGVLLRQLVEDP-DLSCVSHLLVDEIHERG-MNEDFLLII--LRDLLPRRPD 430 (908)
Q Consensus 365 ~----~~~~~------~~~~~~~Iiv~T~g~Ll~~l~~~~-~l~~~~~iIiDEaHeR~-~~~d~ll~~--lk~~~~~~~~ 430 (908)
- ...+. ......+|+|.+|++|..--..+. .-..+.++||||||+-+ +-.||-..+ +..+....|+
T Consensus 87 lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~~lg~l~~~~~~ 166 (590)
T COG0514 87 LNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFRPDYRRLGRLRAGLPN 166 (590)
T ss_pred hhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccCHhHHHHHHHHhhCCC
Confidence 1 11110 112247899999998753221111 24578999999999743 334555444 3345566778
Q ss_pred CcEEEecccCChHH---HHhhhC-CCCccccCCccccceeeehhhHHHhhhcccCcccccccccccccccccchhhhHhh
Q 002552 431 LRLILMSATINADL---FSKYFG-NAPTVHIPGLTFPVTDLFLEDVLEKTRYKMNSKLDSFQGNSRRSRRQDSKKDHLTA 506 (908)
Q Consensus 431 ~qiIlmSAT~~~~~---~~~~f~-~~~~i~v~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (908)
+.++.+|||.+... +.+.++ +.+.+.+.+..-|- . +++ ... +.+
T Consensus 167 ~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~sfdRpN-i-~~~---------v~~-----------------~~~---- 214 (590)
T COG0514 167 PPVLALTATATPRVRDDIREQLGLQDANIFRGSFDRPN-L-ALK---------VVE-----------------KGE---- 214 (590)
T ss_pred CCEEEEeCCCChHHHHHHHHHhcCCCcceEEecCCCch-h-hhh---------hhh-----------------ccc----
Confidence 99999999998664 222222 22222111110000 0 000 000 000
Q ss_pred hhhcccccccccchhhhhHhhHhhhhhhhhchHHHHHHHHHHHhccCCCcEEEecCCHHHHHHHHHHHHhcccCCCCCce
Q 002552 507 LFEDVDIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICRHEGDGAILVFLTGWNDISKLLDQIKVNKFLGDPNKF 586 (908)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~ 586 (908)
....+. .+.. ......+..||||.|++.++.++++|.. .++
T Consensus 215 ------------------------------~~~q~~-fi~~-~~~~~~~~GIIYc~sRk~~E~ia~~L~~-------~g~ 255 (590)
T COG0514 215 ------------------------------PSDQLA-FLAT-VLPQLSKSGIIYCLTRKKVEELAEWLRK-------NGI 255 (590)
T ss_pred ------------------------------HHHHHH-HHHh-hccccCCCeEEEEeeHHhHHHHHHHHHH-------CCC
Confidence 000011 1111 1234566789999999999999999998 578
Q ss_pred EEEeccCCCChHhHHhhhCCCCCCCcEEEEeccccccccCCCCeEEEEeCCCccceeeccccCccccccccccHhhHHHh
Q 002552 587 LVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETSYDALNKLACLLPSWISKASAHQR 666 (908)
Q Consensus 587 ~v~~lH~~l~~~er~~v~~~f~~g~~kIlvaT~iae~GidIp~v~~VId~g~~k~~~yd~~~~~~~l~~~~iS~~~~~QR 666 (908)
.+.++||+|+.++|+.+.+.|.++..+|||||+.+.+|||.|||++||++++|+ |.++|.|-
T Consensus 256 ~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~lP~------------------s~EsYyQE 317 (590)
T COG0514 256 SAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYDLPG------------------SIESYYQE 317 (590)
T ss_pred ceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEEecCCC------------------CHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999 77799999
Q ss_pred ccccCCC-CCcEEEEecChhhH
Q 002552 667 RGRAGRV-QPGVCYKLYPRIIH 687 (908)
Q Consensus 667 ~GRaGR~-~~G~~~~l~~~~~~ 687 (908)
+|||||. .+-.|+.||+..+.
T Consensus 318 ~GRAGRDG~~a~aill~~~~D~ 339 (590)
T COG0514 318 TGRAGRDGLPAEAILLYSPEDI 339 (590)
T ss_pred HhhccCCCCcceEEEeeccccH
Confidence 9999999 78999999998764
No 76
>PRK14701 reverse gyrase; Provisional
Probab=99.96 E-value=4.8e-28 Score=306.48 Aligned_cols=322 Identities=13% Similarity=0.081 Sum_probs=203.2
Q ss_pred HHHHHhhcCCCchHHHHHHHHHHHhCCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHH
Q 002552 272 KAMLSFREKLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVS 351 (908)
Q Consensus 272 ~~~~~~r~~lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~ 351 (908)
.++++.-....++++|.++++.++++++++++||||||||+.+..+.+... . .+.++||+.|||+||.|+++++.
T Consensus 69 ~~~f~~~~G~~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~-~----~g~~aLVl~PTreLa~Qi~~~l~ 143 (1638)
T PRK14701 69 EEFFEKITGFEFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLA-L----KGKKCYIILPTTLLVKQTVEKIE 143 (1638)
T ss_pred HHHHHHhhCCCCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHH-h----cCCeEEEEECHHHHHHHHHHHHH
Confidence 334433223468999999999999999999999999999984333332221 1 24578999999999999999987
Q ss_pred HHhCCC-CCCEEeEEeeccc---------c-CCCCCcEEEEchHHHHHHHhcCCCCCcceEEEEechhccchh-------
Q 002552 352 SERGEN-LGETVGYQIRLES---------K-RSAQTRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMN------- 413 (908)
Q Consensus 352 ~~~~~~-~g~~vg~~~~~~~---------~-~~~~~~Iiv~T~g~Ll~~l~~~~~l~~~~~iIiDEaHeR~~~------- 413 (908)
...... .+..+.+...... . .....+|+|+|||+|.+.+..-.. .++++|||||||+ ++.
T Consensus 144 ~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l~~-~~i~~iVVDEAD~-ml~~~knid~ 221 (1638)
T PRK14701 144 SFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEMKH-LKFDFIFVDDVDA-FLKASKNIDR 221 (1638)
T ss_pred HHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHHhh-CCCCEEEEECcee-ccccccccch
Confidence 653211 2223322211110 1 123589999999999887653222 6799999999994 332
Q ss_pred ----hHHHHHHHH----HH---------------------C-ccCCCCc-EEEecccCChH-HHHhhhCCCCccccCCcc
Q 002552 414 ----EDFLLIILR----DL---------------------L-PRRPDLR-LILMSATINAD-LFSKYFGNAPTVHIPGLT 461 (908)
Q Consensus 414 ----~d~ll~~lk----~~---------------------~-~~~~~~q-iIlmSAT~~~~-~~~~~f~~~~~i~v~~~~ 461 (908)
++|...+.. .+ + ...+..+ ++++|||+++. ....+|.+.-.+.+....
T Consensus 222 ~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~~~~l~~~~l~f~v~~~~ 301 (1638)
T PRK14701 222 SLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKGDRVKLYRELLGFEVGSGR 301 (1638)
T ss_pred hhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchhHHHHHhhcCeEEEecCCC
Confidence 355444432 11 0 1122344 57799999753 344555443333332211
Q ss_pred cc---ceeeehhhHHHhhhcccCcccccccccccccccccchhhhHhhhhhcccccccccchhhhhHhhHhhhhhhhhch
Q 002552 462 FP---VTDLFLEDVLEKTRYKMNSKLDSFQGNSRRSRRQDSKKDHLTALFEDVDIDSNYKNYRASTRASLEAWSAEQIDL 538 (908)
Q Consensus 462 ~~---v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 538 (908)
.. +...|+.. +.
T Consensus 302 ~~lr~i~~~yi~~-----------------------------------------------------------------~~ 316 (1638)
T PRK14701 302 SALRNIVDVYLNP-----------------------------------------------------------------EK 316 (1638)
T ss_pred CCCCCcEEEEEEC-----------------------------------------------------------------CH
Confidence 10 11111100 00
Q ss_pred HHHHHHHHHHHhccCCCcEEEecCCHHH---HHHHHHHHHhcccCCCCCceEEEeccCCCChHhHHhhhCCCCCCCcEEE
Q 002552 539 GLVESTIEYICRHEGDGAILVFLTGWND---ISKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIV 615 (908)
Q Consensus 539 ~li~~~l~~i~~~~~~g~iLVF~~~~~~---i~~l~~~L~~~~~~~~~~~~~v~~lH~~l~~~er~~v~~~f~~g~~kIl 615 (908)
.... .+..+.+.. +..+||||++++. ++.+++.|.. .++.+..+||+ |..+++.|++|+.+||
T Consensus 317 ~~k~-~L~~ll~~~-g~~gIVF~~t~~~~e~ae~la~~L~~-------~Gi~a~~~h~~-----R~~~l~~F~~G~~~VL 382 (1638)
T PRK14701 317 IIKE-HVRELLKKL-GKGGLIFVPIDEGAEKAEEIEKYLLE-------DGFKIELVSAK-----NKKGFDLFEEGEIDYL 382 (1638)
T ss_pred HHHH-HHHHHHHhC-CCCeEEEEeccccchHHHHHHHHHHH-------CCCeEEEecch-----HHHHHHHHHcCCCCEE
Confidence 0011 122222222 3568999999876 4889999987 67889999995 8889999999999999
Q ss_pred Eec----cccccccCCCC-eEEEEeCCCcccee----eccccCccccccccccHhhHHHhccccCCC-CCcEEEEecChh
Q 002552 616 LAT----NIAESSITIDD-VVYVVDCGKAKETS----YDALNKLACLLPSWISKASAHQRRGRAGRV-QPGVCYKLYPRI 685 (908)
Q Consensus 616 vaT----~iae~GidIp~-v~~VId~g~~k~~~----yd~~~~~~~l~~~~iS~~~~~QR~GRaGR~-~~G~~~~l~~~~ 685 (908)
||| ++|+||||+|+ |+|||++|+|+-.. |...... .+. .....++.|||||. .++.|+..+..+
T Consensus 383 VaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~-----~~~-~~~~~~~~~~a~~~g~~~~~~~~~~~~ 456 (1638)
T PRK14701 383 IGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYR-----ILG-LLSEILKIEEELKEGIPIEGVLDVFPE 456 (1638)
T ss_pred EEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhh-----hhc-chHHHHHhhhhcccCCcchhHHHhHHH
Confidence 999 59999999999 99999999999332 1111100 001 22355677999998 567776555443
No 77
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.95 E-value=1.3e-26 Score=269.30 Aligned_cols=424 Identities=19% Similarity=0.185 Sum_probs=275.3
Q ss_pred chHHHHHHHHHHHhC-CeEEEEecCCCCccchHHHHHHHHHHhccC------CCCcEEEEEcccHHHHHHHHHHHHHHhC
Q 002552 283 AFKMKAEFLKAVAEN-QVLVVSGETGCGKTTQLPQFILEEELSSLR------GADCNIICTQPRRISAISVAARVSSERG 355 (908)
Q Consensus 283 i~~~Q~~~i~~i~~~-~~vii~a~TGSGKTt~~~~~il~~~~~~~~------~~~~~ilv~~P~r~la~qi~~rv~~~~~ 355 (908)
+..+|..+..+.+.+ .++++|||||+|||-.+.+-|++.+-.+.+ -...+|++++|.++|+..+...+++.+
T Consensus 310 LNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~VgsfSkRl- 388 (1674)
T KOG0951|consen 310 LNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVGSFSKRL- 388 (1674)
T ss_pred hhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHHHHHHHhhc-
Confidence 446898999887765 599999999999999999999988754332 134589999999999999988886654
Q ss_pred CCCCCEEeEEeecccc---CCCCCcEEEEchHHHHHHHhcCC---CCCcceEEEEechh----ccchhhHHHHH-HHHHH
Q 002552 356 ENLGETVGYQIRLESK---RSAQTRLLFCTTGVLLRQLVEDP---DLSCVSHLLVDEIH----ERGMNEDFLLI-ILRDL 424 (908)
Q Consensus 356 ~~~g~~vg~~~~~~~~---~~~~~~Iiv~T~g~Ll~~l~~~~---~l~~~~~iIiDEaH----eR~~~~d~ll~-~lk~~ 424 (908)
...|..|+-..+.... .-..|.|+++||+.-.-.-+++. ..+-|+.+||||+| .||.-.+-+.. ..++.
T Consensus 389 a~~GI~V~ElTgD~~l~~~qieeTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIHLLhDdRGpvLESIVaRt~r~s 468 (1674)
T KOG0951|consen 389 APLGITVLELTGDSQLGKEQIEETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIHLLHDDRGPVLESIVARTFRRS 468 (1674)
T ss_pred cccCcEEEEecccccchhhhhhcceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhhhcccccchHHHHHHHHHHHHh
Confidence 3456777655544321 13479999999997643333322 34578999999998 35544332222 22333
Q ss_pred CccCCCCcEEEecccC-ChHHHHhhhCCCC----ccccCCccccceeeehhhHHHhhhcccCcccccccccccccccccc
Q 002552 425 LPRRPDLRLILMSATI-NADLFSKYFGNAP----TVHIPGLTFPVTDLFLEDVLEKTRYKMNSKLDSFQGNSRRSRRQDS 499 (908)
Q Consensus 425 ~~~~~~~qiIlmSAT~-~~~~~~~~f~~~~----~i~v~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (908)
.......+++++|||+ |-++.+.|+...+ .+.-.-|+.|+...|+.-. ++
T Consensus 469 es~~e~~RlVGLSATLPNy~DV~~Fl~v~~~glf~fd~syRpvPL~qq~Igi~-------------------------ek 523 (1674)
T KOG0951|consen 469 ESTEEGSRLVGLSATLPNYEDVASFLRVDPEGLFYFDSSYRPVPLKQQYIGIT-------------------------EK 523 (1674)
T ss_pred hhcccCceeeeecccCCchhhhHHHhccCcccccccCcccCcCCccceEeccc-------------------------cC
Confidence 3345578999999999 4566676665433 2222344556665554200 00
Q ss_pred hhhhHhhhhhcccccccccchhhhhHhhHhhhhhhhhchHHHHHHHHHHHhccCCCcEEEecCCHHHHHHHHHHHHhcc-
Q 002552 500 KKDHLTALFEDVDIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICRHEGDGAILVFLTGWNDISKLLDQIKVNK- 578 (908)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~- 578 (908)
+...-.+ .+ -......+++....++|||||.++++.-+.|..|+...
T Consensus 524 ~~~~~~q-----------------------am---------Ne~~yeKVm~~agk~qVLVFVHsRkET~ktA~aIRd~~l 571 (1674)
T KOG0951|consen 524 KPLKRFQ-----------------------AM---------NEACYEKVLEHAGKNQVLVFVHSRKETAKTARAIRDKAL 571 (1674)
T ss_pred CchHHHH-----------------------HH---------HHHHHHHHHHhCCCCcEEEEEEechHHHHHHHHHHHHHh
Confidence 0000000 00 01233344455566899999999999998888887310
Q ss_pred -----------------------------cCCCCCceEEEeccCCCChHhHHhhhCCCCCCCcEEEEeccccccccCCCC
Q 002552 579 -----------------------------FLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDD 629 (908)
Q Consensus 579 -----------------------------~~~~~~~~~v~~lH~~l~~~er~~v~~~f~~g~~kIlvaT~iae~GidIp~ 629 (908)
-+.+...++++.||+||...+|..+.+.|+.|.++|+|+|.++++|+++|+
T Consensus 572 e~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpygfaIHhAGl~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpa 651 (1674)
T KOG0951|consen 572 EEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPYGFAIHHAGLNRKDRELVEDLFADGHIQVLVSTATLAWGVNLPA 651 (1674)
T ss_pred hhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhhccceeeccCCCcchHHHHHHHHhcCceeEEEeehhhhhhcCCCc
Confidence 012234788999999999999999999999999999999999999999999
Q ss_pred eEEEEeCCCccceeeccccCccccccccccHhhHHHhccccCCCC-----CcEEEEecChhhH-hhcCCCCCC--ccccC
Q 002552 630 VVYVVDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRVQ-----PGVCYKLYPRIIH-DAMLPYQLP--EILRT 701 (908)
Q Consensus 630 v~~VId~g~~k~~~yd~~~~~~~l~~~~iS~~~~~QR~GRaGR~~-----~G~~~~l~~~~~~-~~l~~~~~p--ei~r~ 701 (908)
-+++|- .+..|||..+. ...+|..+..||.|||||.+ .|+.+.=+++-.| -++...+.| +-...
T Consensus 652 htViik----gtqvy~pekg~----w~elsp~dv~qmlgragrp~~D~~gegiiit~~se~qyyls~mn~qLpiesq~~~ 723 (1674)
T KOG0951|consen 652 HTVIIK----GTQVYDPEKGR----WTELSPLDVMQMLGRAGRPQYDTCGEGIIITDHSELQYYLSLMNQQLPIESQFVS 723 (1674)
T ss_pred ceEEec----CccccCcccCc----cccCCHHHHHHHHhhcCCCccCcCCceeeccCchHhhhhHHhhhhcCCChHHHHH
Confidence 888885 46779998763 23458889999999999982 3554444444333 333333333 21111
Q ss_pred chHHHHHHHhhcCCCch---hhhhh------ccC-------------CCC----CHHHHHHHHHHHHHcCCCCCC-----
Q 002552 702 PLQELCLHIKSLQLGTV---GSFLS------KAL-------------QPP----DPLAVQNAIELLKTIGALDDM----- 750 (908)
Q Consensus 702 ~L~~~~L~~~~l~~~~~---~~fl~------~~~-------------~~p----~~~~v~~al~~L~~~gal~~~----- 750 (908)
.|.+.+-.-+.+|+... .++|. +.+ |++ -.+.+..|...|++.|.|.-+
T Consensus 724 rl~d~lnaeiv~Gv~~~~d~~~wl~yTylyvRm~~~p~ly~~~~~~~d~~le~~r~~lvhsa~~ll~~~~li~yd~~s~~ 803 (1674)
T KOG0951|consen 724 RLADCLNAEIVLGVRSARDAVDWLGYTYLYVRMVRNPTLYGVSPEASDRLLEQRRADLVHSAATLLDKAGLIKYDRKSGA 803 (1674)
T ss_pred HhhhhhhhhhhcchhhHHHHHhhhcceeeEEeeccCchhccCCcccchHHHHHHHhhhHHHHHhhHhhcCccccccccCc
Confidence 22221111123332221 11110 111 111 124678899999999988532
Q ss_pred CCcCccccccccccCCchhhHH
Q 002552 751 ENLTPLGRHLCTLPVDPNIGKM 772 (908)
Q Consensus 751 ~~lT~lG~~~~~lpl~p~~~k~ 772 (908)
-..|.+|++.+.+.+.-.....
T Consensus 804 ~~~telg~ias~yyi~~~s~~~ 825 (1674)
T KOG0951|consen 804 IQATELGRIASSYYITHGSMAT 825 (1674)
T ss_pred ccchhhccccceeeeecchHHH
Confidence 3689999999999987554443
No 78
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=99.95 E-value=3.6e-30 Score=289.65 Aligned_cols=577 Identities=7% Similarity=-0.192 Sum_probs=442.3
Q ss_pred hHHHHHHhhcCCCchHHHHHHHHHHHhCCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHH
Q 002552 270 SGKAMLSFREKLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAAR 349 (908)
Q Consensus 270 ~~~~~~~~r~~lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~r 349 (908)
++..+...+.-+|.+++-+.+++.+.++.+.++.+.|+||||++.++.++++...+....-+.+++++||++.|...+.+
T Consensus 394 ~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerva~er~e~~g~tvgy~vRf~Sa~prpyg 473 (1282)
T KOG0921|consen 394 RVVIIKGETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERVANERGEEVGETCGYNVRFDSATPRPYG 473 (1282)
T ss_pred ceeeEeecccccchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHHHHhhHHhhccccccccccccccccccc
Confidence 33334455666899999999999999999999999999999999999999998876666678899999999999999999
Q ss_pred HHHHhCCCCCCEEeEEeecccc-CCCCCcEEEEchHHHHHHHhcCCCCCcceEEEEechhccchhhHHHHHHHHHHCccC
Q 002552 350 VSSERGENLGETVGYQIRLESK-RSAQTRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRR 428 (908)
Q Consensus 350 v~~~~~~~~g~~vg~~~~~~~~-~~~~~~Iiv~T~g~Ll~~l~~~~~l~~~~~iIiDEaHeR~~~~d~ll~~lk~~~~~~ 428 (908)
+.-++++.++...+|..+.... ......+-++|.+.|+..+..+ +....+.+.||.|++++++|++..+++.+
T Consensus 474 ~i~fctvgvllr~~e~glrg~sh~i~deiherdv~~dfll~~lr~--m~~ty~dl~v~lmsatIdTd~f~~~f~~~---- 547 (1282)
T KOG0921|consen 474 SIMFCTVGVLLRMMENGLRGISHVIIDEIHERDVDTDFVLIVLRE--MISTYRDLRVVLMSATIDTDLFTNFFSSI---- 547 (1282)
T ss_pred ceeeeccchhhhhhhhcccccccccchhhhhhccchHHHHHHHHh--hhccchhhhhhhhhcccchhhhhhhhccc----
Confidence 8888888888888887665443 2345567789999888877654 46778899999999999999999887765
Q ss_pred CCCcEEEecccCChHHHHhhhCCCCccccCCccccceeeehhhHHHhhhcccCcccccccccccccccccchhhhHhhhh
Q 002552 429 PDLRLILMSATINADLFSKYFGNAPTVHIPGLTFPVTDLFLEDVLEKTRYKMNSKLDSFQGNSRRSRRQDSKKDHLTALF 508 (908)
Q Consensus 429 ~~~qiIlmSAT~~~~~~~~~f~~~~~i~v~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 508 (908)
++++++++|+|...|-.++-.++...++++.++++.++.++-.....-.... ++. ....+...+..
T Consensus 548 --p~~~~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~---n~n---------~~~dd~~~~~~ 613 (1282)
T KOG0921|consen 548 --PDVTVHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGR---NMN---------ILCDPSYNEST 613 (1282)
T ss_pred --cceeeccccccHHHHHHHHhhhhhhccCCCcCccchhhcccccCchhhhccc---ccc---------cccChhhcchh
Confidence 4569999999999988888889999999999999888755422111000000 000 00000000000
Q ss_pred hcccccccccchhhhhHhhHhhhhhhhhchHHHHHHHHHHHhccCCCcEEEecCCHHHHHHHHHHHHhcccCCCCCceEE
Q 002552 509 EDVDIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICRHEGDGAILVFLTGWNDISKLLDQIKVNKFLGDPNKFLV 588 (908)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~v 588 (908)
.. .-+..+.+...-...+...+.-+...+...|+.-.+++..|+|++.+..+......+.....+.. ..+.+
T Consensus 614 ~~-------am~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~-Hsq~~ 685 (1282)
T KOG0921|consen 614 RT-------AMSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPL-HSQLT 685 (1282)
T ss_pred hh-------hhhcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhcccccc-hhhcc
Confidence 00 00001111111111111111111222333344445788999999999999888887777665543 46778
Q ss_pred EeccCCCChHhHHhhhCCCCCCCcEEEEeccccccccCCCCeEEEEeCCCccceeeccccCccccccccccHhhHHHhcc
Q 002552 589 LPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETSYDALNKLACLLPSWISKASAHQRRG 668 (908)
Q Consensus 589 ~~lH~~l~~~er~~v~~~f~~g~~kIlvaT~iae~GidIp~v~~VId~g~~k~~~yd~~~~~~~l~~~~iS~~~~~QR~G 668 (908)
...|..+...+++.+++...++.++++..|+..++.|.+.++.+|++++..+.+.+-+...++.....|-+.-.-.||.|
T Consensus 686 ~~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grvR~G 765 (1282)
T KOG0921|consen 686 SQEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRVRPG 765 (1282)
T ss_pred cHhhhhccCcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCceeccc
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCcEEEEecChhhHhhcCCCCCCccccCchHHHHHHHhhcCCCchhhhhhccCCCCCHHHHHHHHHHHHHcCCCC
Q 002552 669 RAGRVQPGVCYKLYPRIIHDAMLPYQLPEILRTPLQELCLHIKSLQLGTVGSFLSKALQPPDPLAVQNAIELLKTIGALD 748 (908)
Q Consensus 669 RaGR~~~G~~~~l~~~~~~~~l~~~~~pei~r~~L~~~~L~~~~l~~~~~~~fl~~~~~~p~~~~v~~al~~L~~~gal~ 748 (908)
|++|...+.||.+++...+..|..++.|||.++.+...++.++.+-.+.+..++.+++.+|+...+..+...+.+.-+.+
T Consensus 766 ~~f~lcs~arF~~l~~~~t~em~r~plhemalTikll~l~SI~~fl~kal~~~p~dav~e~e~~l~~m~~ld~n~elt~l 845 (1282)
T KOG0921|consen 766 FCFHLCSRARFEALEDHGTAEMFRTPLHEIALTIKLLRLGSIGEFLGKALQPPPYDAVIEAEAVLREMGALDANDELTPL 845 (1282)
T ss_pred ccccccHHHHHHHHHhcCcHhhhcCccHHHHhhHHHHHhhhHHHHHhhccCCCchhhccCchHHHHHhhhhhccCcccch
Confidence 99999999999999999999999999999999998888888877777778888888998888877666655555555555
Q ss_pred CCCCcCccccccccccCCchhhHHHHHhhhccChHHHHHHHhhhccCCCCCCccccHHHHHHHHHhhcCCCCCcHHHHHH
Q 002552 749 DMENLTPLGRHLCTLPVDPNIGKMLLMGAIFQCLNPALTIAAALAHRNPFVLPVNMQKEVDEAKRSFAGDSCSDHIALLK 828 (908)
Q Consensus 749 ~~~~lT~lG~~~~~lpl~p~~~k~l~~~~~~~c~~~~l~i~a~l~~~~~f~~p~~~~~~~~~~~~~~~~~~~sD~l~~l~ 828 (908)
....+|.+++....+|+.|..+++...++.+-..+...+++++-....+|... -.+...+..+|+++..+||.+.+-
T Consensus 846 g~~la~l~iep~~~k~~~lg~~~g~~~~m~~~as~~s~~~~~~~~~~~~~rl~---g~q~~~~g~kfsdhva~~~v~q~~ 922 (1282)
T KOG0921|consen 846 GRMLARLPIEPRIGKMMILGTALGAGSVMCDVASAMSFPTPFVPREKHHSRLS---GTQRKFAGNKFSDHVAIVSVIQGY 922 (1282)
T ss_pred hhhhhhccCcccccceeeechhhccchhhhhhhcccccccccccccccccccc---cchhhccccccccchhhhhhhhhh
Confidence 55568999999999999999999888776654444444455544455555543 233345678899999999999999
Q ss_pred HHHHHHHHHcCC-cHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhCCCCcC
Q 002552 829 AFDGYKDAKRNR-RERDFCWENFLSPITLQMMEDMRSQFLDLLSDIGFVDK 878 (908)
Q Consensus 829 ~f~~w~~~~~~~-~~~~~c~~~~l~~~~l~~~~~~r~ql~~~l~~~~~~~~ 878 (908)
.|+.|..+..+. .+..||..+-+...++.+-.++..||. ++.-.+++.-
T Consensus 923 r~~~q~ga~~e~efc~r~~l~~~~~~~t~~a~~ql~d~L~-q~~fpe~~~~ 972 (1282)
T KOG0921|consen 923 REAVQMGAAAEREFCERYSLSNPVLKMTDGARRQLIDVLR-QCSFPEDILF 972 (1282)
T ss_pred HHHhhhhhhhhhhHhHhhhhcchhhhhhhhhHHHHHHHHH-hccCcccccc
Confidence 999999886544 477899999999999999999999988 8887777663
No 79
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.95 E-value=1.3e-27 Score=288.54 Aligned_cols=332 Identities=23% Similarity=0.234 Sum_probs=226.5
Q ss_pred hcCCCchHHHHHHHHHHHhCCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCC
Q 002552 278 REKLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGEN 357 (908)
Q Consensus 278 r~~lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~~~~~~ 357 (908)
+-...+|++|.+++..+.+|+++||+.+||||||.+|.+||+++++... ..++|++-||++||....+++++.....
T Consensus 66 ~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~---~a~AL~lYPtnALa~DQ~~rl~~~~~~~ 142 (851)
T COG1205 66 AGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDP---SARALLLYPTNALANDQAERLRELISDL 142 (851)
T ss_pred hccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCc---CccEEEEechhhhHhhHHHHHHHHHHhC
Confidence 3344588999999999999999999999999999999999999987643 3478999999999999999998875543
Q ss_pred CCCEEeEEe-----ecccc---CCCCCcEEEEchHHHHHHHhcCC-----CCCcceEEEEechhc-cchhhHHHHHHHHH
Q 002552 358 LGETVGYQI-----RLESK---RSAQTRLLFCTTGVLLRQLVEDP-----DLSCVSHLLVDEIHE-RGMNEDFLLIILRD 423 (908)
Q Consensus 358 ~g~~vg~~~-----~~~~~---~~~~~~Iiv~T~g~Ll~~l~~~~-----~l~~~~~iIiDEaHe-R~~~~d~ll~~lk~ 423 (908)
.+ .|.... ..+.. ....++|+++||.||..++.... .++++++|||||+|- ||...--+..++|+
T Consensus 143 ~~-~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv~GS~vA~llRR 221 (851)
T COG1205 143 PG-KVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGVQGSEVALLLRR 221 (851)
T ss_pred CC-cceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccccchhHHHHHHHH
Confidence 31 222221 11111 24578999999999998665432 578899999999995 55544444444444
Q ss_pred HCc---c-CCCCcEEEecccC-Ch-HHHHhhhCCCCccccCCcccccee--eehhhHHHhhhcccCcccccccccccccc
Q 002552 424 LLP---R-RPDLRLILMSATI-NA-DLFSKYFGNAPTVHIPGLTFPVTD--LFLEDVLEKTRYKMNSKLDSFQGNSRRSR 495 (908)
Q Consensus 424 ~~~---~-~~~~qiIlmSAT~-~~-~~~~~~f~~~~~i~v~~~~~~v~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (908)
+.. . ..++|+|.+|||+ ++ +...++|+..-...|.+...|-.. +.+.+.. .......
T Consensus 222 L~~~~~~~~~~~q~i~~SAT~~np~e~~~~l~~~~f~~~v~~~g~~~~~~~~~~~~p~-----------~~~~~~~---- 286 (851)
T COG1205 222 LLRRLRRYGSPLQIICTSATLANPGEFAEELFGRDFEVPVDEDGSPRGLRYFVRREPP-----------IRELAES---- 286 (851)
T ss_pred HHHHHhccCCCceEEEEeccccChHHHHHHhcCCcceeeccCCCCCCCceEEEEeCCc-----------chhhhhh----
Confidence 443 2 2379999999999 44 445566654333224333322211 1110000 0000000
Q ss_pred cccchhhhHhhhhhcccccccccchhhhhHhhHhhhhhhhhchHHHHHHHHHHHhccCCCcEEEecCCHHHHHHHHHHHH
Q 002552 496 RQDSKKDHLTALFEDVDIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICRHEGDGAILVFLTGWNDISKLLDQIK 575 (908)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~~~~g~iLVF~~~~~~i~~l~~~L~ 575 (908)
.+.+ .......++.... ..+-++|||+.++..++.+.....
T Consensus 287 ----------------------------~r~s---------~~~~~~~~~~~~~--~~~~~tL~F~~sr~~~e~~~~~~~ 327 (851)
T COG1205 287 ----------------------------IRRS---------ALAELATLAALLV--RNGIQTLVFFRSRKQVELLYLSPR 327 (851)
T ss_pred ----------------------------cccc---------hHHHHHHHHHHHH--HcCceEEEEEehhhhhhhhhhchh
Confidence 0000 0001122222222 235589999999999998863332
Q ss_pred hccc-CCCCCceEEEeccCCCChHhHHhhhCCCCCCCcEEEEeccccccccCCCCeEEEEeCCCccceeeccccCccccc
Q 002552 576 VNKF-LGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETSYDALNKLACLL 654 (908)
Q Consensus 576 ~~~~-~~~~~~~~v~~lH~~l~~~er~~v~~~f~~g~~kIlvaT~iae~GidIp~v~~VId~g~~k~~~yd~~~~~~~l~ 654 (908)
.... .+......|..+|+++..++|.+++..|+.|+.+++++||.+|-||||-+++.||.+|.|..
T Consensus 328 ~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~~~~st~AlelgidiG~ldavi~~g~P~~------------- 394 (851)
T COG1205 328 RRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGELLGVIATNALELGIDIGSLDAVIAYGYPGV------------- 394 (851)
T ss_pred HHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCCccEEecchhhhhceeehhhhhHhhcCCCCc-------------
Confidence 2111 01112356888999999999999999999999999999999999999999999999999982
Q ss_pred cccccHhhHHHhccccCCC-CCcEEEEecCh
Q 002552 655 PSWISKASAHQRRGRAGRV-QPGVCYKLYPR 684 (908)
Q Consensus 655 ~~~iS~~~~~QR~GRaGR~-~~G~~~~l~~~ 684 (908)
|..+++||+|||||. +.+..+..+..
T Consensus 395 ----s~~~~~Q~~GRaGR~~~~~l~~~v~~~ 421 (851)
T COG1205 395 ----SVLSFRQRAGRAGRRGQESLVLVVLRS 421 (851)
T ss_pred ----hHHHHHHhhhhccCCCCCceEEEEeCC
Confidence 445999999999998 46666655554
No 80
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.95 E-value=4.9e-27 Score=292.36 Aligned_cols=283 Identities=19% Similarity=0.238 Sum_probs=184.4
Q ss_pred HHHHhhcCCCchHHHHHHHHHHHhCCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHH
Q 002552 273 AMLSFREKLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSS 352 (908)
Q Consensus 273 ~~~~~r~~lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~ 352 (908)
+..+......++++|..+++.++.|++++++||||||||+ +.+++...... .+++++|++|||+||.|+++++.+
T Consensus 69 ~~f~~~~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~----~g~~vLIL~PTreLa~Qi~~~l~~ 143 (1171)
T TIGR01054 69 EFFKKAVGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAK----KGKRCYIILPTTLLVIQVAEKISS 143 (1171)
T ss_pred HHHHHhcCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHh----cCCeEEEEeCHHHHHHHHHHHHHH
Confidence 3444445568899999999999999999999999999997 44455444322 246899999999999999998877
Q ss_pred HhCCCCCC---EEe-EEeec--c------cc-CCCCCcEEEEchHHHHHHHhcCCCCCcceEEEEechhccchh------
Q 002552 353 ERGENLGE---TVG-YQIRL--E------SK-RSAQTRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMN------ 413 (908)
Q Consensus 353 ~~~~~~g~---~vg-~~~~~--~------~~-~~~~~~Iiv~T~g~Ll~~l~~~~~l~~~~~iIiDEaHeR~~~------ 413 (908)
.... .+. .++ |.-.. . .. ...+.+|+|+|||+|.+.+..-. .++++||||||| ++++
T Consensus 144 l~~~-~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~--~~~~~iVvDEaD-~~L~~~k~vd 219 (1171)
T TIGR01054 144 LAEK-AGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELG--PKFDFIFVDDVD-ALLKASKNVD 219 (1171)
T ss_pred HHHh-cCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhc--CCCCEEEEeChH-hhhhccccHH
Confidence 5432 121 122 11110 0 01 12358999999999998775421 189999999999 4444
Q ss_pred -----hHHHHHHHHHH----------------------C-ccCCCCc--EEEecccC-ChHHHHhhhCCCCccccCCccc
Q 002552 414 -----EDFLLIILRDL----------------------L-PRRPDLR--LILMSATI-NADLFSKYFGNAPTVHIPGLTF 462 (908)
Q Consensus 414 -----~d~ll~~lk~~----------------------~-~~~~~~q--iIlmSAT~-~~~~~~~~f~~~~~i~v~~~~~ 462 (908)
++|....+..+ + ....+.| ++++|||. +...-..+|.+.-.+.+.....
T Consensus 220 ~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~~l~r~ll~~~v~~~~~ 299 (1171)
T TIGR01054 220 KLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRAKLFRELLGFEVGGGSD 299 (1171)
T ss_pred HHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHHHHcccccceEecCccc
Confidence 22322111111 1 1122334 67789994 4433223443322233321110
Q ss_pred ---cceeeehhhHHHhhhcccCcccccccccccccccccchhhhHhhhhhcccccccccchhhhhHhhHhhhhhhhhchH
Q 002552 463 ---PVTDLFLEDVLEKTRYKMNSKLDSFQGNSRRSRRQDSKKDHLTALFEDVDIDSNYKNYRASTRASLEAWSAEQIDLG 539 (908)
Q Consensus 463 ---~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (908)
.+...|... . +
T Consensus 300 ~~r~I~~~~~~~--------------------------------------------------------------~--~-- 313 (1171)
T TIGR01054 300 TLRNVVDVYVED--------------------------------------------------------------E--D-- 313 (1171)
T ss_pred cccceEEEEEec--------------------------------------------------------------c--c--
Confidence 111111100 0 0
Q ss_pred HHHHHHHHHHhccCCCcEEEecCCH---HHHHHHHHHHHhcccCCCCCceEEEeccCCCChHhHHhhhCCCCCCCcEEEE
Q 002552 540 LVESTIEYICRHEGDGAILVFLTGW---NDISKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVL 616 (908)
Q Consensus 540 li~~~l~~i~~~~~~g~iLVF~~~~---~~i~~l~~~L~~~~~~~~~~~~~v~~lH~~l~~~er~~v~~~f~~g~~kIlv 616 (908)
.. ..+..+++.. +..+||||+++ +.++.+++.|.. .++.+..+||++++ .+++.|++|+.+|||
T Consensus 314 ~~-~~L~~ll~~l-~~~~IVFv~t~~~~~~a~~l~~~L~~-------~g~~a~~lhg~~~~----~~l~~Fr~G~~~vLV 380 (1171)
T TIGR01054 314 LK-ETLLEIVKKL-GTGGIVYVSIDYGKEKAEEIAEFLEN-------HGVKAVAYHATKPK----EDYEKFAEGEIDVLI 380 (1171)
T ss_pred HH-HHHHHHHHHc-CCCEEEEEeccccHHHHHHHHHHHHh-------CCceEEEEeCCCCH----HHHHHHHcCCCCEEE
Confidence 00 1111222222 34689999999 999999999987 57889999999973 688999999999999
Q ss_pred e----ccccccccCCCC-eEEEEeCCCcccee
Q 002552 617 A----TNIAESSITIDD-VVYVVDCGKAKETS 643 (908)
Q Consensus 617 a----T~iae~GidIp~-v~~VId~g~~k~~~ 643 (908)
| ||+++||||||+ |+|||++|+|+...
T Consensus 381 ata~~tdv~aRGIDip~~V~~vI~~~~P~~~~ 412 (1171)
T TIGR01054 381 GVASYYGTLVRGLDLPERVRYAVFLGVPKFKV 412 (1171)
T ss_pred EeccccCcccccCCCCccccEEEEECCCCEEE
Confidence 9 599999999999 89999999998643
No 81
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.94 E-value=2.8e-27 Score=262.75 Aligned_cols=364 Identities=17% Similarity=0.185 Sum_probs=245.9
Q ss_pred CCchHHHHHHHHHHHhCCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCC
Q 002552 281 LPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLGE 360 (908)
Q Consensus 281 lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~~~~~~~g~ 360 (908)
+-+.++|..+|..+.+++.|+|+|-|.+|||..+-..|...+-. +-+||+|.|-++|..|.++++..|++. +|.
T Consensus 128 F~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~-----kQRVIYTSPIKALSNQKYREl~~EF~D-VGL 201 (1041)
T KOG0948|consen 128 FTLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLRE-----KQRVIYTSPIKALSNQKYRELLEEFKD-VGL 201 (1041)
T ss_pred cccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHh-----cCeEEeeChhhhhcchhHHHHHHHhcc-cce
Confidence 45678999999999999999999999999998887777765532 348999999999999999999999864 343
Q ss_pred EEeEEeeccccCCCCCcEEEEchHHHHHHHhcCC-CCCcceEEEEechh-----ccchhhHHHHHHHHHHCccCCCCcEE
Q 002552 361 TVGYQIRLESKRSAQTRLLFCTTGVLLRQLVEDP-DLSCVSHLLVDEIH-----ERGMNEDFLLIILRDLLPRRPDLRLI 434 (908)
Q Consensus 361 ~vg~~~~~~~~~~~~~~Iiv~T~g~Ll~~l~~~~-~l~~~~~iIiDEaH-----eR~~~~d~ll~~lk~~~~~~~~~qiI 434 (908)
-.| +-..++....+|||+++|-.+|-++. -+..+..||+||+| |||+-- -..++-..++.+.|
T Consensus 202 MTG-----DVTInP~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIHYMRDkERGVVW------EETIIllP~~vr~V 270 (1041)
T KOG0948|consen 202 MTG-----DVTINPDASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDKERGVVW------EETIILLPDNVRFV 270 (1041)
T ss_pred eec-----ceeeCCCCceeeeHHHHHHHHHhccchHhheeeeEEeeeehhccccccceee------eeeEEeccccceEE
Confidence 333 33446778899999999999998887 78999999999999 344221 11233356689999
Q ss_pred EecccC-ChHHHHhhhC-----CCCccccCCccccceeeehhhHHHhhhcccCcccccccccccccccccchhhhHhhhh
Q 002552 435 LMSATI-NADLFSKYFG-----NAPTVHIPGLTFPVTDLFLEDVLEKTRYKMNSKLDSFQGNSRRSRRQDSKKDHLTALF 508 (908)
Q Consensus 435 lmSAT~-~~~~~~~~f~-----~~~~i~v~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 508 (908)
.+|||+ |+-.|++|.- .|.++...-|+.|+..+..+ .....-|.+..+...| ..+.+...+
T Consensus 271 FLSATiPNA~qFAeWI~~ihkQPcHVVYTdyRPTPLQHyifP-~ggdGlylvVDek~~F------------rednF~~am 337 (1041)
T KOG0948|consen 271 FLSATIPNARQFAEWICHIHKQPCHVVYTDYRPTPLQHYIFP-AGGDGLYLVVDEKGKF------------REDNFQKAM 337 (1041)
T ss_pred EEeccCCCHHHHHHHHHHHhcCCceEEeecCCCCcceeeeec-CCCCeeEEEEeccccc------------chHHHHHHH
Confidence 999999 5667999984 36677777787787655222 1111111111111111 112222222
Q ss_pred hcccccccccchhhhhHhhHh-hhhhhhhchHHHHHHHHHHHhccCCCcEEEecCCHHHHHHHHHHHHhcccCC------
Q 002552 509 EDVDIDSNYKNYRASTRASLE-AWSAEQIDLGLVESTIEYICRHEGDGAILVFLTGWNDISKLLDQIKVNKFLG------ 581 (908)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~li~~~l~~i~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~~------ 581 (908)
..+........+.......-. ..........-+..++..|.. ....++|||.=++++|+.+|-.+....+..
T Consensus 338 ~~l~~~~~~~~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~-~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~ 416 (1041)
T KOG0948|consen 338 SVLRKAGESDGKKKANKKGRKGGTGGKGPGDSDIYKIVKMIME-RNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKEL 416 (1041)
T ss_pred HHhhccCCCccccccccccccCCcCCCCCCcccHHHHHHHHHh-hcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHH
Confidence 211110000000000000000 000000000114455555554 345689999999999999887775422110
Q ss_pred -------------C-------------CCceEEEeccCCCChHhHHhhhCCCCCCCcEEEEeccccccccCCCCeEEEEe
Q 002552 582 -------------D-------------PNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVVD 635 (908)
Q Consensus 582 -------------~-------------~~~~~v~~lH~~l~~~er~~v~~~f~~g~~kIlvaT~iae~GidIp~v~~VId 635 (908)
. ..+-+|..|||||-+--.+-|.-.|.+|-+|||+||-+.+.|+|.|+-++|.-
T Consensus 417 V~~iF~nAi~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTVvFT 496 (1041)
T KOG0948|consen 417 VETIFNNAIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTVVFT 496 (1041)
T ss_pred HHHHHHHHHHhcChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeEEEe
Confidence 0 01346888999999999888888899999999999999999999997776652
Q ss_pred CCCccceeeccccCccccccccccHhhHHHhccccCCC---CCcEEEEecChh
Q 002552 636 CGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRV---QPGVCYKLYPRI 685 (908)
Q Consensus 636 ~g~~k~~~yd~~~~~~~l~~~~iS~~~~~QR~GRaGR~---~~G~~~~l~~~~ 685 (908)
. ...||.. ...|||--+|+|+.|||||. ..|.|+.+.++.
T Consensus 497 -~---~rKfDG~------~fRwissGEYIQMSGRAGRRG~DdrGivIlmiDek 539 (1041)
T KOG0948|consen 497 -A---VRKFDGK------KFRWISSGEYIQMSGRAGRRGIDDRGIVILMIDEK 539 (1041)
T ss_pred -e---ccccCCc------ceeeecccceEEecccccccCCCCCceEEEEecCc
Confidence 2 2335554 46899999999999999998 569999999875
No 82
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.94 E-value=1.5e-26 Score=263.06 Aligned_cols=373 Identities=16% Similarity=0.162 Sum_probs=241.7
Q ss_pred cCCCchHHHHHHHHHHHhCCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCC
Q 002552 279 EKLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENL 358 (908)
Q Consensus 279 ~~lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~~~~~~~ 358 (908)
-.+.+..+|+++|-++..|..|+|.|+|.+|||..+-..|.-. .....+.++|.|-++|..|.++.+++.++. +
T Consensus 294 ~pFelD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAiala-----q~h~TR~iYTSPIKALSNQKfRDFk~tF~D-v 367 (1248)
T KOG0947|consen 294 YPFELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALA-----QKHMTRTIYTSPIKALSNQKFRDFKETFGD-V 367 (1248)
T ss_pred CCCCccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHH-----HhhccceEecchhhhhccchHHHHHHhccc-c
Confidence 3466778999999999999999999999999997766555432 112458999999999999999999887764 3
Q ss_pred CCEEeEEeeccccCCCCCcEEEEchHHHHHHHhcCC-CCCcceEEEEechh-----ccchhhHHHHHHHHHHCccCCCCc
Q 002552 359 GETVGYQIRLESKRSAQTRLLFCTTGVLLRQLVEDP-DLSCVSHLLVDEIH-----ERGMNEDFLLIILRDLLPRRPDLR 432 (908)
Q Consensus 359 g~~vg~~~~~~~~~~~~~~Iiv~T~g~Ll~~l~~~~-~l~~~~~iIiDEaH-----eR~~~~d~ll~~lk~~~~~~~~~q 432 (908)
|. +..+-...+...++|||+++|-.+|-++. .+.++.+||+|||| |||+--+ ..++-..+.++
T Consensus 368 gL-----lTGDvqinPeAsCLIMTTEILRsMLYrgadliRDvE~VIFDEVHYiND~eRGvVWE------EViIMlP~HV~ 436 (1248)
T KOG0947|consen 368 GL-----LTGDVQINPEASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYINDVERGVVWE------EVIIMLPRHVN 436 (1248)
T ss_pred ce-----eecceeeCCCcceEeehHHHHHHHHhcccchhhccceEEEeeeeecccccccccce------eeeeeccccce
Confidence 32 33455667789999999999999998887 78999999999999 4653221 11223456799
Q ss_pred EEEecccC-ChHHHHhhhCCCC-----ccccCCccccceeeehhh--HHH---h-hhcccCcccccccccccccccccch
Q 002552 433 LILMSATI-NADLFSKYFGNAP-----TVHIPGLTFPVTDLFLED--VLE---K-TRYKMNSKLDSFQGNSRRSRRQDSK 500 (908)
Q Consensus 433 iIlmSAT~-~~~~~~~~f~~~~-----~i~v~~~~~~v~~~~l~~--~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (908)
+|++|||+ |...|++|.|... ++....|+.|++.++... .+. . ..+......+.+.......+-...+
T Consensus 437 ~IlLSATVPN~~EFA~WIGRtK~K~IyViST~kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~~~ak~~~~~ 516 (1248)
T KOG0947|consen 437 FILLSATVPNTLEFADWIGRTKQKTIYVISTSKRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLKKEAKFVDVE 516 (1248)
T ss_pred EEEEeccCCChHHHHHHhhhccCceEEEEecCCCccceEEEEEeccceehhhcccchhhhhcchhhhhhhcccccccccc
Confidence 99999998 5667999998532 445557778887665432 111 0 0000000000000000000000000
Q ss_pred hhhHhhhhh---cccccccccchhhhhHh-hHhhhhhhhhchHHHHHHHHHHHhccCCCcEEEecCCHHHHHHHHHHHHh
Q 002552 501 KDHLTALFE---DVDIDSNYKNYRASTRA-SLEAWSAEQIDLGLVESTIEYICRHEGDGAILVFLTGWNDISKLLDQIKV 576 (908)
Q Consensus 501 ~~~~~~~~~---~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~li~~~l~~i~~~~~~g~iLVF~~~~~~i~~l~~~L~~ 576 (908)
.+. ..-.. ...-..++.+- .-+. .+.+.... ......++.++.. ..--+++|||=+++.|++.+++|..
T Consensus 517 ~~~-~~~~rgs~~~ggk~~~~~g--~~r~~~~~~nrr~---~~~~l~lin~L~k-~~lLP~VvFvFSkkrCde~a~~L~~ 589 (1248)
T KOG0947|consen 517 KSD-ARGGRGSQKRGGKTNYHNG--GSRGSGIGKNRRK---QPTWLDLINHLRK-KNLLPVVVFVFSKKRCDEYADYLTN 589 (1248)
T ss_pred ccc-ccccccccccCCcCCCCCC--Ccccccccccccc---cchHHHHHHHHhh-cccCceEEEEEccccHHHHHHHHhc
Confidence 000 00000 00000000000 0000 00000000 0234566666654 3345799999999999999999975
Q ss_pred cccCCCC--------------------------------CceEEEeccCCCChHhHHhhhCCCCCCCcEEEEeccccccc
Q 002552 577 NKFLGDP--------------------------------NKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESS 624 (908)
Q Consensus 577 ~~~~~~~--------------------------------~~~~v~~lH~~l~~~er~~v~~~f~~g~~kIlvaT~iae~G 624 (908)
..+..+. ..-+++.|||++-+--.+-|...|..|.+|||+||-++++|
T Consensus 590 ~nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFATETFAMG 669 (1248)
T KOG0947|consen 590 LNLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFATETFAMG 669 (1248)
T ss_pred cCcccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeehhhhhhh
Confidence 3221110 12368889999999999999999999999999999999999
Q ss_pred cCCCCeEEEEeCCCccceeeccccCccccccccccHhhHHHhccccCCC---CCcEEEEecChh
Q 002552 625 ITIDDVVYVVDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRV---QPGVCYKLYPRI 685 (908)
Q Consensus 625 idIp~v~~VId~g~~k~~~yd~~~~~~~l~~~~iS~~~~~QR~GRaGR~---~~G~~~~l~~~~ 685 (908)
||.|+-++|+++ +.| +|... ..-+..-+|.|++|||||. ..|..+.+....
T Consensus 670 VNMPARtvVF~S-l~K---hDG~e------fR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~ 723 (1248)
T KOG0947|consen 670 VNMPARTVVFSS-LRK---HDGNE------FRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDS 723 (1248)
T ss_pred cCCCceeEEeee-hhh---ccCcc------eeecCChhHHhhhccccccccCcCceEEEEecCC
Confidence 999988888774 332 44432 2234667999999999998 579988887654
No 83
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.94 E-value=5e-25 Score=257.63 Aligned_cols=107 Identities=15% Similarity=0.125 Sum_probs=94.5
Q ss_pred cCCCcEEEecCCHHHHHHHHHHHHhcccCCCCCceEEEeccCCCChHhHHhhhCCCCCCCcEEEEeccccccccCCC---
Q 002552 552 EGDGAILVFLTGWNDISKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITID--- 628 (908)
Q Consensus 552 ~~~g~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lH~~l~~~er~~v~~~f~~g~~kIlvaT~iae~GidIp--- 628 (908)
..+.++||||++.+.++.++..|.. .++.+..+||.+.+.++..+...++.| .|+||||+|+||+|||
T Consensus 422 ~~~~pvLIft~s~~~se~ls~~L~~-------~gi~~~~L~a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~ 492 (762)
T TIGR03714 422 ETGQPVLLITGSVEMSEIYSELLLR-------EGIPHNLLNAQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGK 492 (762)
T ss_pred hCCCCEEEEECcHHHHHHHHHHHHH-------CCCCEEEecCCChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCc
Confidence 3467899999999999999999987 466778899999999999998888877 7999999999999999
Q ss_pred ------CeEEEEeCCCccceeeccccCccccccccccHhhHHHhccccCCC-CCcEEEEecChhh
Q 002552 629 ------DVVYVVDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRV-QPGVCYKLYPRII 686 (908)
Q Consensus 629 ------~v~~VId~g~~k~~~yd~~~~~~~l~~~~iS~~~~~QR~GRaGR~-~~G~~~~l~~~~~ 686 (908)
++.+||+++.|.. +.+ .||+|||||. .+|.++.+++.++
T Consensus 493 ~v~~~GGL~vIit~~~ps~------------------rid-~qr~GRtGRqG~~G~s~~~is~eD 538 (762)
T TIGR03714 493 GVAELGGLAVIGTERMENS------------------RVD-LQLRGRSGRQGDPGSSQFFVSLED 538 (762)
T ss_pred cccccCCeEEEEecCCCCc------------------HHH-HHhhhcccCCCCceeEEEEEccch
Confidence 9999999999973 335 9999999999 7899999998643
No 84
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.94 E-value=4.5e-25 Score=255.24 Aligned_cols=368 Identities=16% Similarity=0.129 Sum_probs=211.2
Q ss_pred HhhcCCCchHHHHHHHHHHHhCCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhC
Q 002552 276 SFREKLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERG 355 (908)
Q Consensus 276 ~~r~~lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~~~~ 355 (908)
+.--.+-++++|...++.++.|+ |+.+.||+|||+++.++++..... +..++|+.||++||.|.++.+...+.
T Consensus 97 ~R~lg~~p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al~-----G~~v~VvTptreLA~qdae~~~~l~~ 169 (656)
T PRK12898 97 GRVLGQRHFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAALA-----GLPVHVITVNDYLAERDAELMRPLYE 169 (656)
T ss_pred HHHhCCCCChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhhc-----CCeEEEEcCcHHHHHHHHHHHHHHHh
Confidence 33445788899999999999999 999999999999999999987542 35789999999999999998876543
Q ss_pred CCCCCEEeEEeeccc----cCCCCCcEEEEchHHH-HHHHhcC--------------------------CCCCcceEEEE
Q 002552 356 ENLGETVGYQIRLES----KRSAQTRLLFCTTGVL-LRQLVED--------------------------PDLSCVSHLLV 404 (908)
Q Consensus 356 ~~~g~~vg~~~~~~~----~~~~~~~Iiv~T~g~L-l~~l~~~--------------------------~~l~~~~~iIi 404 (908)
.+|..|+......+ +...+++|+|+|..-| .+.|+.. .....+.+.||
T Consensus 170 -~lGlsv~~i~gg~~~~~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~aIv 248 (656)
T PRK12898 170 -ALGLTVGCVVEDQSPDERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLHFAIV 248 (656)
T ss_pred -hcCCEEEEEeCCCCHHHHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccccceeEe
Confidence 45677776544322 1234789999998755 3333221 12456889999
Q ss_pred echhccch---------------h--hHHHHHHHHHHCccC--------CCCcEEEecccCChHHHHhhhCCCC-ccccC
Q 002552 405 DEIHERGM---------------N--EDFLLIILRDLLPRR--------PDLRLILMSATINADLFSKYFGNAP-TVHIP 458 (908)
Q Consensus 405 DEaHeR~~---------------~--~d~ll~~lk~~~~~~--------~~~qiIlmSAT~~~~~~~~~f~~~~-~i~v~ 458 (908)
||||..-+ . ++++....+.+.... .+-|.|.++..- ...+.++|+..+ .....
T Consensus 249 DEvDSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g-~~~~e~~~~~l~~~~~~~ 327 (656)
T PRK12898 249 DEADSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAG-RARIAELAESLPPAWRGA 327 (656)
T ss_pred ecccceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHH-HHHHHHHhCcchhhcccc
Confidence 99994111 1 233333322222111 123444444321 122334443311 11000
Q ss_pred CccccceeeehhhHHH-------hhhcccCcc----cccccccccccccccchhhhHhhhhhc---cccccc--------
Q 002552 459 GLTFPVTDLFLEDVLE-------KTRYKMNSK----LDSFQGNSRRSRRQDSKKDHLTALFED---VDIDSN-------- 516 (908)
Q Consensus 459 ~~~~~v~~~~l~~~~~-------~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-------- 516 (908)
. ...+++...+. ...|.+... .+.+.+..... ..-.+-+.++++. +.+...
T Consensus 328 ~----~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~g---r~w~~GLhQaieaKE~v~i~~e~~t~a~It 400 (656)
T PRK12898 328 V----RREELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPD---RSWEDGLHQMIEAKEGCELTDPRETLARIT 400 (656)
T ss_pred h----HHHHHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCC---CCcChHHHHHHHHhcCCCCCcCceeeeeeh
Confidence 0 00111111110 011111100 01111110000 0001122222220 000000
Q ss_pred ----ccchhh---------hhHhhHhhhh------------------hh--hh-chHHHHHHHHHHHhc-cCCCcEEEec
Q 002552 517 ----YKNYRA---------STRASLEAWS------------------AE--QI-DLGLVESTIEYICRH-EGDGAILVFL 561 (908)
Q Consensus 517 ----~~~~~~---------~~~~~~~~~~------------------~~--~~-~~~li~~~l~~i~~~-~~~g~iLVF~ 561 (908)
++.|.. .....+..+. .. .. ..+....++..+... ..+.++||||
T Consensus 401 ~q~~Fr~Y~kl~GmTGTa~~~~~El~~~y~l~vv~IPt~kp~~r~~~~~~v~~t~~~K~~aL~~~i~~~~~~~~pvLIft 480 (656)
T PRK12898 401 YQRFFRRYLRLAGMTGTAREVAGELWSVYGLPVVRIPTNRPSQRRHLPDEVFLTAAAKWAAVAARVRELHAQGRPVLVGT 480 (656)
T ss_pred HHHHHHhhHHHhcccCcChHHHHHHHHHHCCCeEEeCCCCCccceecCCEEEeCHHHHHHHHHHHHHHHHhcCCCEEEEe
Confidence 000000 0000000000 00 00 112223333333221 2346799999
Q ss_pred CCHHHHHHHHHHHHhcccCCCCCceEEEeccCCCChHhHHhhhCCCCCCCcEEEEeccccccccCCC---CeE-----EE
Q 002552 562 TGWNDISKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITID---DVV-----YV 633 (908)
Q Consensus 562 ~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lH~~l~~~er~~v~~~f~~g~~kIlvaT~iae~GidIp---~v~-----~V 633 (908)
++++.++.+++.|.. .++.+..+||.+.+.++..+...+. ...|+||||+|+||+||+ +|. +|
T Consensus 481 ~t~~~se~L~~~L~~-------~gi~~~~Lhg~~~~rE~~ii~~ag~--~g~VlVATdmAgRGtDI~l~~~V~~~GGLhV 551 (656)
T PRK12898 481 RSVAASERLSALLRE-------AGLPHQVLNAKQDAEEAAIVARAGQ--RGRITVATNMAGRGTDIKLEPGVAARGGLHV 551 (656)
T ss_pred CcHHHHHHHHHHHHH-------CCCCEEEeeCCcHHHHHHHHHHcCC--CCcEEEEccchhcccCcCCccchhhcCCCEE
Confidence 999999999999998 5678889999977666665555544 446999999999999999 777 99
Q ss_pred EeCCCccceeeccccCccccccccccHhhHHHhccccCCC-CCcEEEEecChhh
Q 002552 634 VDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRV-QPGVCYKLYPRII 686 (908)
Q Consensus 634 Id~g~~k~~~yd~~~~~~~l~~~~iS~~~~~QR~GRaGR~-~~G~~~~l~~~~~ 686 (908)
|++++|. |...|.||+|||||. .+|.|+.+++.++
T Consensus 552 I~~d~P~------------------s~r~y~hr~GRTGRqG~~G~s~~~is~eD 587 (656)
T PRK12898 552 ILTERHD------------------SARIDRQLAGRCGRQGDPGSYEAILSLED 587 (656)
T ss_pred EEcCCCC------------------CHHHHHHhcccccCCCCCeEEEEEechhH
Confidence 9999999 666999999999999 7899999998643
No 85
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.94 E-value=3e-26 Score=240.11 Aligned_cols=303 Identities=16% Similarity=0.188 Sum_probs=188.0
Q ss_pred CcEEEEEcccHHHHHHHHHHHHHHhCCCC----C--CEEe-EEeecc-ccCCCCCcEEEEchHHHHHHHhcCC-CCCcce
Q 002552 330 DCNIICTQPRRISAISVAARVSSERGENL----G--ETVG-YQIRLE-SKRSAQTRLLFCTTGVLLRQLVEDP-DLSCVS 400 (908)
Q Consensus 330 ~~~ilv~~P~r~la~qi~~rv~~~~~~~~----g--~~vg-~~~~~~-~~~~~~~~Iiv~T~g~Ll~~l~~~~-~l~~~~ 400 (908)
.+..+|+.|.|+||.|+...+.++..... - ..+| ...+.. .....+++|+|.|||+|++.+..+. .|.++.
T Consensus 286 ap~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~~~lt~cr 365 (725)
T KOG0349|consen 286 APEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGLVTLTHCR 365 (725)
T ss_pred CcceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhccceeeeeeE
Confidence 35689999999999999997765532211 1 1112 112211 2234589999999999999998877 899999
Q ss_pred EEEEechhcc--chhhHHHHHHHHHHCccC---CCCcEEEecccCCh---HHHHhhhCCCC-ccccCCc-cccceeeehh
Q 002552 401 HLLVDEIHER--GMNEDFLLIILRDLLPRR---PDLRLILMSATINA---DLFSKYFGNAP-TVHIPGL-TFPVTDLFLE 470 (908)
Q Consensus 401 ~iIiDEaHeR--~~~~d~ll~~lk~~~~~~---~~~qiIlmSAT~~~---~~~~~~f~~~~-~i~v~~~-~~~v~~~~l~ 470 (908)
++|+||++-. -.+.|++-.+...+-... ..+|.+++|||+.. ..+.+-+..-| -+...+. ..|-+.+.+.
T Consensus 366 FlvlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD~vpetvHhvv 445 (725)
T KOG0349|consen 366 FLVLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGEDLVPETVHHVV 445 (725)
T ss_pred EEEecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEecccccccchhhccce
Confidence 9999999942 145666666555544332 35899999999842 22222111111 0111111 0111111100
Q ss_pred hH-HHhhhcccCcccccccccccccccccchhhhHhhhhhccccccc----ccchhhhhHhh-HhhhhhhhhchHHHHHH
Q 002552 471 DV-LEKTRYKMNSKLDSFQGNSRRSRRQDSKKDHLTALFEDVDIDSN----YKNYRASTRAS-LEAWSAEQIDLGLVEST 544 (908)
Q Consensus 471 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~-~~~~~~~~~~~~li~~~ 544 (908)
.+ .... +.....+.+.++..+.... ..+.++..-.+ ...... ...
T Consensus 446 ~lv~p~~---------------------d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkg--------Ey~ 496 (725)
T KOG0349|consen 446 KLVCPSV---------------------DGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKG--------EYG 496 (725)
T ss_pred eecCCcc---------------------CccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcC--------chh
Confidence 00 0000 0000001111110000000 00111111000 000000 011
Q ss_pred HHHHHhccCCCcEEEecCCHHHHHHHHHHHHhcccCCCCCceEEEeccCCCChHhHHhhhCCCCCCCcEEEEeccccccc
Q 002552 545 IEYICRHEGDGAILVFLTGWNDISKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESS 624 (908)
Q Consensus 545 l~~i~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lH~~l~~~er~~v~~~f~~g~~kIlvaT~iae~G 624 (908)
+..| +.....+.||||.|+.+|+.|.+++.+..- ..|.++++||++.+.||++-++.|+.+..+.||||++|+||
T Consensus 497 v~ai-~~h~mdkaiifcrtk~dcDnLer~~~qkgg----~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaarg 571 (725)
T KOG0349|consen 497 VVAI-RRHAMDKAIIFCRTKQDCDNLERMMNQKGG----KHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARG 571 (725)
T ss_pred hhhh-hhhccCceEEEEeccccchHHHHHHHHcCC----ccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhcc
Confidence 1122 223456899999999999999999987432 57899999999999999999999999999999999999999
Q ss_pred cCCCCeEEEEeCCCccceeeccccCccccccccccHhhHHHhccccCCC-CCcEEEEecCh
Q 002552 625 ITIDDVVYVVDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRV-QPGVCYKLYPR 684 (908)
Q Consensus 625 idIp~v~~VId~g~~k~~~yd~~~~~~~l~~~~iS~~~~~QR~GRaGR~-~~G~~~~l~~~ 684 (908)
|||.++-|+||.-+|.++. +|+||+||.||+ +-|.++.|...
T Consensus 572 ldi~g~p~~invtlpd~k~------------------nyvhrigrvgraermglaislvat 614 (725)
T KOG0349|consen 572 LDITGLPFMINVTLPDDKT------------------NYVHRIGRVGRAERMGLAISLVAT 614 (725)
T ss_pred ccccCCceEEEEecCcccc------------------hhhhhhhccchhhhcceeEEEeec
Confidence 9999999999999999655 999999999999 77999998753
No 86
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.94 E-value=1.1e-25 Score=267.16 Aligned_cols=366 Identities=17% Similarity=0.183 Sum_probs=242.0
Q ss_pred cCCCchHHHHHHHHHHHhCCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCC
Q 002552 279 EKLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENL 358 (908)
Q Consensus 279 ~~lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~~~~~~~ 358 (908)
..+.+.++|++++.+|..+..|+||||||||||...-.++...+.. +.++++|.|.++|..|.++++..+++..
T Consensus 116 ~~F~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~-----~qrviYTsPIKALsNQKyrdl~~~fgdv- 189 (1041)
T COG4581 116 YPFELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRD-----GQRVIYTSPIKALSNQKYRDLLAKFGDV- 189 (1041)
T ss_pred CCCCcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHHc-----CCceEeccchhhhhhhHHHHHHHHhhhh-
Confidence 4567889999999999999999999999999997777666655432 3369999999999999999999988754
Q ss_pred CCEEeEEeeccccCCCCCcEEEEchHHHHHHHhcCC-CCCcceEEEEechhc-----cchhhHHHHHHHHHHCccCCCCc
Q 002552 359 GETVGYQIRLESKRSAQTRLLFCTTGVLLRQLVEDP-DLSCVSHLLVDEIHE-----RGMNEDFLLIILRDLLPRRPDLR 432 (908)
Q Consensus 359 g~~vg~~~~~~~~~~~~~~Iiv~T~g~Ll~~l~~~~-~l~~~~~iIiDEaHe-----R~~~~d~ll~~lk~~~~~~~~~q 432 (908)
...+|.-.+ +-..++++.++|+|+++|-+++..+. .+..+.+||+||+|- |++--+ ..++.....++
T Consensus 190 ~~~vGL~TG-Dv~IN~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~eRG~VWE------E~Ii~lP~~v~ 262 (1041)
T COG4581 190 ADMVGLMTG-DVSINPDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRERGVVWE------EVIILLPDHVR 262 (1041)
T ss_pred hhhccceec-ceeeCCCCceEEeeHHHHHHHhccCcccccccceEEEEeeeeccccccchhHH------HHHHhcCCCCc
Confidence 223444333 33456789999999999999998885 899999999999993 432221 12223455689
Q ss_pred EEEecccC-ChHHHHhhhC-----CCCccccCCccccceeeehhhHHHhhhcccCcccccccccccccccccch-hhhHh
Q 002552 433 LILMSATI-NADLFSKYFG-----NAPTVHIPGLTFPVTDLFLEDVLEKTRYKMNSKLDSFQGNSRRSRRQDSK-KDHLT 505 (908)
Q Consensus 433 iIlmSAT~-~~~~~~~~f~-----~~~~i~v~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 505 (908)
+|+||||+ |++.|+.|+. ++.++..+.|..|...++.... ..+... ..+.........+ ...+.
T Consensus 263 ~v~LSATv~N~~EF~~Wi~~~~~~~~~vv~t~~RpvPL~~~~~~~~---~l~~lv------de~~~~~~~~~~~a~~~l~ 333 (1041)
T COG4581 263 FVFLSATVPNAEEFAEWIQRVHSQPIHVVSTEHRPVPLEHFVYVGK---GLFDLV------DEKKKFNAENFPSANRSLS 333 (1041)
T ss_pred EEEEeCCCCCHHHHHHHHHhccCCCeEEEeecCCCCCeEEEEecCC---ceeeee------cccccchhhcchhhhhhhh
Confidence 99999999 7788999997 4557777889999988876530 011110 0000000000000 00000
Q ss_pred ----hhhhcccccccccchhhhhHhhHhhhhhhhhchHHHHHHHHHHHhccCCCcEEEecCCHHHHHHHHHHHHhccc--
Q 002552 506 ----ALFEDVDIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICRHEGDGAILVFLTGWNDISKLLDQIKVNKF-- 579 (908)
Q Consensus 506 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~-- 579 (908)
...+..+.... .+....+.. .....-......++..+.. ...-++|+|+=+++.|+..+..+....+
T Consensus 334 ~~~~~~~~~~~~~~~--~~a~~~~~~----~~~~~~~~~~~~iv~~l~~-~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~ 406 (1041)
T COG4581 334 CFSEKVRETDDGDVG--RYARRTKAL----RGSAKGPAGRPEIVNKLDK-DNLLPAIVFSFSRRGCEEAAQILSTLDLVL 406 (1041)
T ss_pred ccchhccccCccccc--ccccccccc----CCcccccccchHHHhhhhh-hcCCceEEEEEchhhHHHHHHHhccccccc
Confidence 00000000000 000000000 0000000011233444332 3456899999999999998887752110
Q ss_pred ------------------CC-CC-------------CceEEEeccCCCChHhHHhhhCCCCCCCcEEEEeccccccccCC
Q 002552 580 ------------------LG-DP-------------NKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITI 627 (908)
Q Consensus 580 ------------------~~-~~-------------~~~~v~~lH~~l~~~er~~v~~~f~~g~~kIlvaT~iae~GidI 627 (908)
++ .. ..-.+..||++|-+..+..+...|..|-+||++||-+.+.|+|+
T Consensus 407 ~~~~e~~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNm 486 (1041)
T COG4581 407 TEEKERAIREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINM 486 (1041)
T ss_pred CCcHHHHHHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCC
Confidence 00 00 01246689999999999999999999999999999999999999
Q ss_pred CCeEEEEeCCCccceeeccccCccccccccccHhhHHHhccccCCC---CCcEEEEecC
Q 002552 628 DDVVYVVDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRV---QPGVCYKLYP 683 (908)
Q Consensus 628 p~v~~VId~g~~k~~~yd~~~~~~~l~~~~iS~~~~~QR~GRaGR~---~~G~~~~l~~ 683 (908)
|.-++| -+.+.| ||.. ...|++..+|.|+.|||||. ..|..+.+.+
T Consensus 487 Partvv-~~~l~K---~dG~------~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~ 535 (1041)
T COG4581 487 PARTVV-FTSLSK---FDGN------GHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEP 535 (1041)
T ss_pred ccccee-eeeeEE---ecCC------ceeecChhHHHHhhhhhccccccccceEEEecC
Confidence 965555 445444 5533 46789999999999999998 5699998844
No 87
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.94 E-value=4.8e-25 Score=257.86 Aligned_cols=328 Identities=12% Similarity=0.100 Sum_probs=193.6
Q ss_pred cCCCchHHHHHHHHHHHhC---CeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhC
Q 002552 279 EKLPAFKMKAEFLKAVAEN---QVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERG 355 (908)
Q Consensus 279 ~~lpi~~~Q~~~i~~i~~~---~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~~~~ 355 (908)
....+.+||.+++..+..+ +..+|+.|||+|||.+....+.. . ..++||++|+.+|+.|+.+++.+...
T Consensus 252 ~~~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~-l-------~k~tLILvps~~Lv~QW~~ef~~~~~ 323 (732)
T TIGR00603 252 PTTQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACT-V-------KKSCLVLCTSAVSVEQWKQQFKMWST 323 (732)
T ss_pred cCCCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHH-h-------CCCEEEEeCcHHHHHHHHHHHHHhcC
Confidence 3456789999999998743 36899999999999877654432 1 23578888999999999999987654
Q ss_pred CCCCCEEeEEeeccccCCCCCcEEEEchHHHHHHHhcC-------CCC--CcceEEEEechhccchhhHHHHHHHHHHCc
Q 002552 356 ENLGETVGYQIRLESKRSAQTRLLFCTTGVLLRQLVED-------PDL--SCVSHLLVDEIHERGMNEDFLLIILRDLLP 426 (908)
Q Consensus 356 ~~~g~~vg~~~~~~~~~~~~~~Iiv~T~g~Ll~~l~~~-------~~l--~~~~~iIiDEaHeR~~~~d~ll~~lk~~~~ 426 (908)
........|.-...........|+|+|+.++....... ..+ ..+++||+||||+ .. ......++..+
T Consensus 324 l~~~~I~~~tg~~k~~~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~-lp-A~~fr~il~~l-- 399 (732)
T TIGR00603 324 IDDSQICRFTSDAKERFHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHV-VP-AAMFRRVLTIV-- 399 (732)
T ss_pred CCCceEEEEecCcccccccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEcccc-cc-HHHHHHHHHhc--
Confidence 33322222221111111224689999999875432111 122 4688999999994 22 22222233322
Q ss_pred cCCCCcEEEecccCChH-----HHHhhhCCCCccccCCccccceeeehhhHHHhhhcccCcccccccccccccccccchh
Q 002552 427 RRPDLRLILMSATINAD-----LFSKYFGNAPTVHIPGLTFPVTDLFLEDVLEKTRYKMNSKLDSFQGNSRRSRRQDSKK 501 (908)
Q Consensus 427 ~~~~~qiIlmSAT~~~~-----~~~~~f~~~~~i~v~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (908)
+....+++|||+-.+ .+..+|| +.+.... ..+.... .|... ..... .+.... .
T Consensus 400 --~a~~RLGLTATP~ReD~~~~~L~~LiG-P~vye~~----------~~eLi~~-G~LA~--~~~~e---v~v~~t---~ 457 (732)
T TIGR00603 400 --QAHCKLGLTATLVREDDKITDLNFLIG-PKLYEAN----------WMELQKK-GFIAN--VQCAE---VWCPMT---P 457 (732)
T ss_pred --CcCcEEEEeecCcccCCchhhhhhhcC-CeeeecC----------HHHHHhC-Ccccc--ceEEE---EEecCC---H
Confidence 334679999998422 1222332 2211110 0000000 00000 00000 000000 0
Q ss_pred hhHhhhhhcccccccccchhhhhHhhHhhhhhhhhchHHHHHHHHHHHhc--cCCCcEEEecCCHHHHHHHHHHHHhccc
Q 002552 502 DHLTALFEDVDIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICRH--EGDGAILVFLTGWNDISKLLDQIKVNKF 579 (908)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~--~~~g~iLVF~~~~~~i~~l~~~L~~~~~ 579 (908)
+....... .....+..+..++. . +...+..+.+. ..+.++|||+.....++.+++.|.
T Consensus 458 ~~~~~yl~----------~~~~~k~~l~~~np--~----K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L~---- 517 (732)
T TIGR00603 458 EFYREYLR----------ENSRKRMLLYVMNP--N----KFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKLG---- 517 (732)
T ss_pred HHHHHHHH----------hcchhhhHHhhhCh--H----HHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHcC----
Confidence 00000000 00000000000100 1 11222222221 356799999999998888887662
Q ss_pred CCCCCceEEEeccCCCChHhHHhhhCCCCCC-CcEEEEeccccccccCCCCeEEEEeCCCc-cceeeccccCcccccccc
Q 002552 580 LGDPNKFLVLPLHGSMPTINQREIFDRPPPN-KRKIVLATNIAESSITIDDVVYVVDCGKA-KETSYDALNKLACLLPSW 657 (908)
Q Consensus 580 ~~~~~~~~v~~lH~~l~~~er~~v~~~f~~g-~~kIlvaT~iae~GidIp~v~~VId~g~~-k~~~yd~~~~~~~l~~~~ 657 (908)
+..+||++++.+|+++++.|+.| ..++||+|+++.+|||+|++++||..+.| .
T Consensus 518 --------~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~SkVgdeGIDlP~a~vvI~~s~~~g----------------- 572 (732)
T TIGR00603 518 --------KPFIYGPTSQQERMQILQNFQHNPKVNTIFLSKVGDTSIDLPEANVLIQISSHYG----------------- 572 (732)
T ss_pred --------CceEECCCCHHHHHHHHHHHHhCCCccEEEEecccccccCCCCCCEEEEeCCCCC-----------------
Confidence 23489999999999999999875 88999999999999999999999997765 3
Q ss_pred ccHhhHHHhccccCCCCC-cEE-------EEecChhh
Q 002552 658 ISKASAHQRRGRAGRVQP-GVC-------YKLYPRII 686 (908)
Q Consensus 658 iS~~~~~QR~GRaGR~~~-G~~-------~~l~~~~~ 686 (908)
|..+|+||+||++|..+ |.+ |.|.+++.
T Consensus 573 -S~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT 608 (732)
T TIGR00603 573 -SRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDT 608 (732)
T ss_pred -CHHHHHHHhcccccCCCCCccccccceEEEEecCCc
Confidence 66799999999999954 444 78887643
No 88
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.93 E-value=1.2e-24 Score=256.89 Aligned_cols=366 Identities=16% Similarity=0.151 Sum_probs=214.3
Q ss_pred cCCCchHHHHHHHHHHHhCCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCC
Q 002552 279 EKLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENL 358 (908)
Q Consensus 279 ~~lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~~~~~~~ 358 (908)
-.+-++++|...+..+.+|+ |+.+.||+|||+++.++++...+. +..+.|+.||++||.|.++.+...+. .+
T Consensus 75 ~g~~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al~-----G~~v~VvTpt~~LA~qd~e~~~~l~~-~l 146 (790)
T PRK09200 75 LGMRPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNALE-----GKGVHLITVNDYLAKRDAEEMGQVYE-FL 146 (790)
T ss_pred hCCCCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHHc-----CCCeEEEeCCHHHHHHHHHHHHHHHh-hc
Confidence 45677888888888887777 999999999999999998866553 44688889999999999988766543 46
Q ss_pred CCEEeEEeeccc-----cCCCCCcEEEEchHHH-HHHHhc----CC---CCCcceEEEEechhccchh------------
Q 002552 359 GETVGYQIRLES-----KRSAQTRLLFCTTGVL-LRQLVE----DP---DLSCVSHLLVDEIHERGMN------------ 413 (908)
Q Consensus 359 g~~vg~~~~~~~-----~~~~~~~Iiv~T~g~L-l~~l~~----~~---~l~~~~~iIiDEaHeR~~~------------ 413 (908)
|..||..+.... +..-.++|+|+||+.| .++|.. .+ .+..+.++||||||..-+|
T Consensus 147 Gl~v~~i~g~~~~~~~r~~~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDea~tpliisg~~ 226 (790)
T PRK09200 147 GLTVGLNFSDIDDASEKKAIYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQTPLIISGKP 226 (790)
T ss_pred CCeEEEEeCCCCcHHHHHHhcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceeccCCCceeeeCCC
Confidence 777776654332 1223689999999988 444432 11 5688999999999942111
Q ss_pred ---hHHHHHHHHHHCccC--------CCCcEEEecccCChHHHHhhhCCCCccccCCccccceeeehhhHHH-------h
Q 002552 414 ---EDFLLIILRDLLPRR--------PDLRLILMSATINADLFSKYFGNAPTVHIPGLTFPVTDLFLEDVLE-------K 475 (908)
Q Consensus 414 ---~d~ll~~lk~~~~~~--------~~~qiIlmSAT~~~~~~~~~f~~~~~i~v~~~~~~v~~~~l~~~~~-------~ 475 (908)
..+...+.+.+.... .+.+.+.++.. ..+.+.++|+-......+... -.+++...+. .
T Consensus 227 ~~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~-g~~~~e~~~~i~~l~~~~~~~---~~~~i~~Al~A~~~~~~d 302 (790)
T PRK09200 227 RVQSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQ-GIEKAESYFGIDNLYSLEHQV---LYRHIILALRAHVLFKRD 302 (790)
T ss_pred ccccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHh-HHHHHHHhcCCccccChhhhH---HHHHHHHHHHHHHHhhcC
Confidence 111111111111111 12233333221 112234444322211111000 0011111111 0
Q ss_pred hhcccCcc----cccccccccccccccchhhhHhhhhhc---cccccc--------c----cchhh---------hhHhh
Q 002552 476 TRYKMNSK----LDSFQGNSRRSRRQDSKKDHLTALFED---VDIDSN--------Y----KNYRA---------STRAS 527 (908)
Q Consensus 476 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~--------~----~~~~~---------~~~~~ 527 (908)
..|.+... .+.+.+..... ..-.+-+.++++. +.+... + +.|.. .....
T Consensus 303 ~dYiV~~~~v~ivD~~TGr~~~g---r~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t~~~e 379 (790)
T PRK09200 303 VDYIVYDGEIVLVDRFTGRVLPG---RKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEEKE 379 (790)
T ss_pred CcEEEECCEEEEEECCCCcCCCC---CccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChHHHHH
Confidence 11111100 01111110000 0001222222221 111110 0 00000 00000
Q ss_pred Hhhh-h-----------------hh---hhchHHHHHHHHHHHhc-cCCCcEEEecCCHHHHHHHHHHHHhcccCCCCCc
Q 002552 528 LEAW-S-----------------AE---QIDLGLVESTIEYICRH-EGDGAILVFLTGWNDISKLLDQIKVNKFLGDPNK 585 (908)
Q Consensus 528 ~~~~-~-----------------~~---~~~~~li~~~l~~i~~~-~~~g~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~ 585 (908)
+... . .. ....+....++..+... ..+.++||||++.+.++.+++.|.. .+
T Consensus 380 ~~~~Y~l~v~~IPt~kp~~r~d~~~~i~~~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~-------~g 452 (790)
T PRK09200 380 FFEVYNMEVVQIPTNRPIIRIDYPDKVFVTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDE-------AG 452 (790)
T ss_pred HHHHhCCcEEECCCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHH-------CC
Confidence 0000 0 00 00012233344444332 3467899999999999999999998 56
Q ss_pred eEEEeccCCCChHhHHhhhCCCCCCCcEEEEeccccccccCC---CCeE-----EEEeCCCccceeeccccCcccccccc
Q 002552 586 FLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITI---DDVV-----YVVDCGKAKETSYDALNKLACLLPSW 657 (908)
Q Consensus 586 ~~v~~lH~~l~~~er~~v~~~f~~g~~kIlvaT~iae~GidI---p~v~-----~VId~g~~k~~~yd~~~~~~~l~~~~ 657 (908)
+.+..+||.+.+.++..+...+..| +|+||||+|+||+|| |+|. +||++++|.
T Consensus 453 i~~~~L~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~----------------- 513 (790)
T PRK09200 453 IPHNLLNAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERME----------------- 513 (790)
T ss_pred CCEEEecCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEEeccCCC-----------------
Confidence 7788899999999998888888777 799999999999999 7999 999999999
Q ss_pred ccHhhHHHhccccCCC-CCcEEEEecChhh
Q 002552 658 ISKASAHQRRGRAGRV-QPGVCYKLYPRII 686 (908)
Q Consensus 658 iS~~~~~QR~GRaGR~-~~G~~~~l~~~~~ 686 (908)
|...|.||+|||||. .+|.|+.+++.++
T Consensus 514 -s~r~y~qr~GRtGR~G~~G~s~~~is~eD 542 (790)
T PRK09200 514 -SRRVDLQLRGRSGRQGDPGSSQFFISLED 542 (790)
T ss_pred -CHHHHHHhhccccCCCCCeeEEEEEcchH
Confidence 666999999999999 7899999998643
No 89
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.93 E-value=1.5e-24 Score=251.97 Aligned_cols=108 Identities=21% Similarity=0.207 Sum_probs=96.4
Q ss_pred cCCCcEEEecCCHHHHHHHHHHHHhcccCCCCCceEEEeccCCCChHhHHhhhCCCCCCCcEEEEeccccccccCCCC--
Q 002552 552 EGDGAILVFLTGWNDISKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDD-- 629 (908)
Q Consensus 552 ~~~g~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lH~~l~~~er~~v~~~f~~g~~kIlvaT~iae~GidIp~-- 629 (908)
..+.++||||++.+.++.+++.|.+ .++....+|+. +.+|+..+..|+.+...|+||||+|+||+||+.
T Consensus 403 ~~grpvLV~t~si~~se~ls~~L~~-------~gi~~~~Lna~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~ 473 (745)
T TIGR00963 403 AKGQPVLVGTTSVEKSELLSNLLKE-------RGIPHNVLNAK--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEE 473 (745)
T ss_pred hcCCCEEEEeCcHHHHHHHHHHHHH-------cCCCeEEeeCC--hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccc
Confidence 3467899999999999999999998 45667779998 788899999999999999999999999999998
Q ss_pred -----eEEEEeCCCccceeeccccCccccccccccHhhHHHhccccCCC-CCcEEEEecChhh
Q 002552 630 -----VVYVVDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRV-QPGVCYKLYPRII 686 (908)
Q Consensus 630 -----v~~VId~g~~k~~~yd~~~~~~~l~~~~iS~~~~~QR~GRaGR~-~~G~~~~l~~~~~ 686 (908)
..+||++++|. |...+.||+|||||. .+|.+..+.+.++
T Consensus 474 V~~~GGl~VI~t~~p~------------------s~ri~~q~~GRtGRqG~~G~s~~~ls~eD 518 (745)
T TIGR00963 474 VKELGGLYVIGTERHE------------------SRRIDNQLRGRSGRQGDPGSSRFFLSLED 518 (745)
T ss_pred hhhcCCcEEEecCCCC------------------cHHHHHHHhccccCCCCCcceEEEEeccH
Confidence 55999999999 666999999999999 7899998888653
No 90
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.93 E-value=9.9e-25 Score=228.83 Aligned_cols=309 Identities=17% Similarity=0.183 Sum_probs=206.0
Q ss_pred HHHHHHHHHH-HhCCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCC---CC
Q 002552 285 KMKAEFLKAV-AENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENL---GE 360 (908)
Q Consensus 285 ~~Q~~~i~~i-~~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~~~~~~~---g~ 360 (908)
+.|++++..+ ..+++|.|++|||+|||+++-+|.|-+ ....||+.|.-+|.......+... ...+ ..
T Consensus 23 ~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~--------~gITIV~SPLiALIkDQiDHL~~L-KVp~~SLNS 93 (641)
T KOG0352|consen 23 RLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH--------GGITIVISPLIALIKDQIDHLKRL-KVPCESLNS 93 (641)
T ss_pred hHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh--------CCeEEEehHHHHHHHHHHHHHHhc-CCchhHhcc
Confidence 5788888875 567799999999999999998887754 236788999999987766555332 2111 11
Q ss_pred EEeEE-----eeccccCCCCCcEEEEchHHH--------HHHHhcCCCCCcceEEEEechhccc-hhhHHHHHHHH--HH
Q 002552 361 TVGYQ-----IRLESKRSAQTRLLFCTTGVL--------LRQLVEDPDLSCVSHLLVDEIHERG-MNEDFLLIILR--DL 424 (908)
Q Consensus 361 ~vg~~-----~~~~~~~~~~~~Iiv~T~g~L--------l~~l~~~~~l~~~~~iIiDEaHeR~-~~~d~ll~~lk--~~ 424 (908)
...-+ +.......+..+++|.||++. |+-|. .-.-++++|+||||.-+ +..||-...|+ .+
T Consensus 94 KlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~---~r~~L~Y~vVDEAHCVSQWGHDFRPDYL~LG~L 170 (641)
T KOG0352|consen 94 KLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLA---NRDVLRYIVVDEAHCVSQWGHDFRPDYLTLGSL 170 (641)
T ss_pred hhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHh---hhceeeeEEechhhhHhhhccccCcchhhhhhH
Confidence 11111 111122345789999999863 33332 23567899999999632 33444444433 23
Q ss_pred CccCCCCcEEEecccCChHHHHhhhC----CCCccccCCccccceeeehhhHHHhhhcccCcccccccccccccccccch
Q 002552 425 LPRRPDLRLILMSATINADLFSKYFG----NAPTVHIPGLTFPVTDLFLEDVLEKTRYKMNSKLDSFQGNSRRSRRQDSK 500 (908)
Q Consensus 425 ~~~~~~~qiIlmSAT~~~~~~~~~f~----~~~~i~v~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (908)
....++.--|.++||.+++.-.+.|. ..|+-......|.-.-+| |+
T Consensus 171 RS~~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~FR~NLFY--D~---------------------------- 220 (641)
T KOG0352|consen 171 RSVCPGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPTFRDNLFY--DN---------------------------- 220 (641)
T ss_pred HhhCCCCceEEeecccChhHHHHHHHHHhhcCcHHhccCcchhhhhhH--HH----------------------------
Confidence 34667888999999998775443332 122111111111111111 00
Q ss_pred hhhHhhhhhcccccccccchhhhhHhhHhhhhhhhhchHHHHHHHHHHHh---------ccCCCcEEEecCCHHHHHHHH
Q 002552 501 KDHLTALFEDVDIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICR---------HEGDGAILVFLTGWNDISKLL 571 (908)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~---------~~~~g~iLVF~~~~~~i~~l~ 571 (908)
+++++-. -++..+.+.-.+-+- ....|--||||.|+++++.++
T Consensus 221 ---------------~~K~~I~-------------D~~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~A 272 (641)
T KOG0352|consen 221 ---------------HMKSFIT-------------DCLTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVA 272 (641)
T ss_pred ---------------HHHHHhh-------------hHhHhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHH
Confidence 0000000 001111111111110 122478899999999999999
Q ss_pred HHHHhcccCCCCCceEEEeccCCCChHhHHhhhCCCCCCCcEEEEeccccccccCCCCeEEEEeCCCccceeeccccCcc
Q 002552 572 DQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETSYDALNKLA 651 (908)
Q Consensus 572 ~~L~~~~~~~~~~~~~v~~lH~~l~~~er~~v~~~f~~g~~kIlvaT~iae~GidIp~v~~VId~g~~k~~~yd~~~~~~ 651 (908)
-.|.. .++....+|++|...||.+|.+.+.+|++.||+||+-..+|||-|+|++||+.+.++
T Consensus 273 I~l~~-------~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~PvI~AT~SFGMGVDKp~VRFViHW~~~q----------- 334 (641)
T KOG0352|consen 273 IMLEI-------AGIPAMAYHAGLKKKERTEVQEKWMNNEIPVIAATVSFGMGVDKPDVRFVIHWSPSQ----------- 334 (641)
T ss_pred HHhhh-------cCcchHHHhcccccchhHHHHHHHhcCCCCEEEEEeccccccCCcceeEEEecCchh-----------
Confidence 98886 567778899999999999999999999999999999999999999999999999998
Q ss_pred ccccccccHhhHHHhccccCCC-CCcEEEEecChhhHh
Q 002552 652 CLLPSWISKASAHQRRGRAGRV-QPGVCYKLYPRIIHD 688 (908)
Q Consensus 652 ~l~~~~iS~~~~~QR~GRaGR~-~~G~~~~l~~~~~~~ 688 (908)
+.+-|.|-.|||||. .+..|-..|++++-+
T Consensus 335 -------n~AgYYQESGRAGRDGk~SyCRLYYsR~D~~ 365 (641)
T KOG0352|consen 335 -------NLAGYYQESGRAGRDGKRSYCRLYYSRQDKN 365 (641)
T ss_pred -------hhHHHHHhccccccCCCccceeeeecccchH
Confidence 777999999999999 678888778876654
No 91
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.92 E-value=3.4e-24 Score=256.55 Aligned_cols=319 Identities=16% Similarity=0.172 Sum_probs=196.6
Q ss_pred CCCchHHHHHHHHHHHhC---CeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCC
Q 002552 280 KLPAFKMKAEFLKAVAEN---QVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGE 356 (908)
Q Consensus 280 ~lpi~~~Q~~~i~~i~~~---~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~~~~~ 356 (908)
...++++|.++++.+.++ +++++.|+||||||.++.+++.+.+. . +.++|+++|+++|+.|+++++.+.++.
T Consensus 142 ~~~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~-~----g~~vLvLvPt~~L~~Q~~~~l~~~fg~ 216 (679)
T PRK05580 142 PPTLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLA-Q----GKQALVLVPEIALTPQMLARFRARFGA 216 (679)
T ss_pred CCCCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHH-c----CCeEEEEeCcHHHHHHHHHHHHHHhCC
Confidence 345788999999999874 78999999999999988877666542 1 357899999999999999999887765
Q ss_pred CCCCEEeEEeecc------ccCCCCCcEEEEchHHHHHHHhcCCCCCcceEEEEechhccchhhHH-----HHHHHHHHC
Q 002552 357 NLGETVGYQIRLE------SKRSAQTRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDF-----LLIILRDLL 425 (908)
Q Consensus 357 ~~g~~vg~~~~~~------~~~~~~~~Iiv~T~g~Ll~~l~~~~~l~~~~~iIiDEaHeR~~~~d~-----ll~~lk~~~ 425 (908)
.+....|.....+ .......+|+|+|++.+.. .+.++++|||||+|+-+...+- ...+ ..+.
T Consensus 217 ~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~~------p~~~l~liVvDEeh~~s~~~~~~p~y~~r~v-a~~r 289 (679)
T PRK05580 217 PVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALFL------PFKNLGLIIVDEEHDSSYKQQEGPRYHARDL-AVVR 289 (679)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhcc------cccCCCEEEEECCCccccccCcCCCCcHHHH-HHHH
Confidence 4322222111100 0122357999999987642 4688999999999964322110 0011 1122
Q ss_pred ccCCCCcEEEecccCChHHHHhhhCC-CCccccCCcc----ccceeeehhhHHHhhhcccCcccccccccccccccccch
Q 002552 426 PRRPDLRLILMSATINADLFSKYFGN-APTVHIPGLT----FPVTDLFLEDVLEKTRYKMNSKLDSFQGNSRRSRRQDSK 500 (908)
Q Consensus 426 ~~~~~~qiIlmSAT~~~~~~~~~f~~-~~~i~v~~~~----~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (908)
....+.++|++|||+..+.+.....+ ...+....+. .|. ...++ .-.... . ..
T Consensus 290 a~~~~~~~il~SATps~~s~~~~~~g~~~~~~l~~r~~~~~~p~-v~~id-~~~~~~-----------~---------~~ 347 (679)
T PRK05580 290 AKLENIPVVLGSATPSLESLANAQQGRYRLLRLTKRAGGARLPE-VEIID-MRELLR-----------G---------EN 347 (679)
T ss_pred hhccCCCEEEEcCCCCHHHHHHHhccceeEEEeccccccCCCCe-EEEEe-chhhhh-----------h---------cc
Confidence 23467899999999987766543221 2222222221 111 11110 000000 0 00
Q ss_pred hhhHhhhhhcccccccccchhhhhHhhHhhhhhhhhchHHHHHHHHHHHhccCCCcEEEecCC-----------------
Q 002552 501 KDHLTALFEDVDIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICRHEGDGAILVFLTG----------------- 563 (908)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~~~~g~iLVF~~~----------------- 563 (908)
. ..+... +.+.+...+ ..+.++|||+|.
T Consensus 348 ~--------------------------------~~ls~~-l~~~i~~~l--~~g~qvll~~nrrGy~~~~~C~~Cg~~~~ 392 (679)
T PRK05580 348 G--------------------------------SFLSPP-LLEAIKQRL--ERGEQVLLFLNRRGYAPFLLCRDCGWVAE 392 (679)
T ss_pred c--------------------------------CCCCHH-HHHHHHHHH--HcCCeEEEEEcCCCCCCceEhhhCcCccC
Confidence 0 000000 111111111 123355555553
Q ss_pred -------------------------------------------HHHHHHHHHHHHhcccCCCCCceEEEeccCCCCh--H
Q 002552 564 -------------------------------------------WNDISKLLDQIKVNKFLGDPNKFLVLPLHGSMPT--I 598 (908)
Q Consensus 564 -------------------------------------------~~~i~~l~~~L~~~~~~~~~~~~~v~~lH~~l~~--~ 598 (908)
...++.+++.|.+.. .+..|..+|+++.+ +
T Consensus 393 C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e~~~e~l~~~f-----p~~~v~~~~~d~~~~~~ 467 (679)
T PRK05580 393 CPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPGTERLEEELAELF-----PEARILRIDRDTTRRKG 467 (679)
T ss_pred CCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeeccHHHHHHHHHHhC-----CCCcEEEEeccccccch
Confidence 234555666665421 35678899999874 5
Q ss_pred hHHhhhCCCCCCCcEEEEeccccccccCCCCeEEE--EeCCCccc-eeeccccCccccccccccHhhHHHhccccCCC-C
Q 002552 599 NQREIFDRPPPNKRKIVLATNIAESSITIDDVVYV--VDCGKAKE-TSYDALNKLACLLPSWISKASAHQRRGRAGRV-Q 674 (908)
Q Consensus 599 er~~v~~~f~~g~~kIlvaT~iae~GidIp~v~~V--Id~g~~k~-~~yd~~~~~~~l~~~~iS~~~~~QR~GRaGR~-~ 674 (908)
+++++++.|++|+..|||+|+++++|+|+|+|++| +|.|.+-. ..|++... .-..+.|++|||||. .
T Consensus 468 ~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfra~Er---------~~~~l~q~~GRagR~~~ 538 (679)
T PRK05580 468 ALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFRASER---------TFQLLTQVAGRAGRAEK 538 (679)
T ss_pred hHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCccchHHH---------HHHHHHHHHhhccCCCC
Confidence 78899999999999999999999999999999988 56665532 12322221 234799999999997 7
Q ss_pred CcEEEEe
Q 002552 675 PGVCYKL 681 (908)
Q Consensus 675 ~G~~~~l 681 (908)
+|.++..
T Consensus 539 ~g~viiq 545 (679)
T PRK05580 539 PGEVLIQ 545 (679)
T ss_pred CCEEEEE
Confidence 8998843
No 92
>PRK09694 helicase Cas3; Provisional
Probab=99.92 E-value=1.5e-23 Score=252.21 Aligned_cols=326 Identities=17% Similarity=0.214 Sum_probs=188.9
Q ss_pred CCCchHHHHHHHHHHHhCCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHh----C
Q 002552 280 KLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSER----G 355 (908)
Q Consensus 280 ~lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~~~----~ 355 (908)
...++++|..+.........+||.||||+|||.++..++... .. .+...+|++..||++++.++++|+.+.. .
T Consensus 284 ~~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l-~~--~~~~~gi~~aLPT~Atan~m~~Rl~~~~~~~f~ 360 (878)
T PRK09694 284 GYQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRL-ID--QGLADSIIFALPTQATANAMLSRLEALASKLFP 360 (878)
T ss_pred CCCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHH-HH--hCCCCeEEEECcHHHHHHHHHHHHHHHHHHhcC
Confidence 346789999886655567789999999999998876665533 22 2234589999999999999999987532 1
Q ss_pred -CCCCCEEeEEe---------ecc--------------------ccCCCCCcEEEEchHHHHHHHhcCC--CCCcc----
Q 002552 356 -ENLGETVGYQI---------RLE--------------------SKRSAQTRLLFCTTGVLLRQLVEDP--DLSCV---- 399 (908)
Q Consensus 356 -~~~g~~vg~~~---------~~~--------------------~~~~~~~~Iiv~T~g~Ll~~l~~~~--~l~~~---- 399 (908)
..+...-|... ... .+..--..|+|+|...++..+...+ .+..+
T Consensus 361 ~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~La~ 440 (878)
T PRK09694 361 SPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFGLGR 440 (878)
T ss_pred CCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHhhcc
Confidence 11111111110 000 0000126899999876664443322 33333
Q ss_pred eEEEEechhccchhhH-HHHHHHHHHCccCCCCcEEEecccCChHHHHhhh---CCCCccccCCccccceeeehhhHHHh
Q 002552 400 SHLLVDEIHERGMNED-FLLIILRDLLPRRPDLRLILMSATINADLFSKYF---GNAPTVHIPGLTFPVTDLFLEDVLEK 475 (908)
Q Consensus 400 ~~iIiDEaHeR~~~~d-~ll~~lk~~~~~~~~~qiIlmSAT~~~~~~~~~f---~~~~~i~v~~~~~~v~~~~l~~~~~~ 475 (908)
++|||||+|--+.++. ++..+++.+.. ...++|+||||++.....+++ +....+ .....||.-...-.. ..
T Consensus 441 svvIiDEVHAyD~ym~~lL~~~L~~l~~--~g~~vIllSATLP~~~r~~L~~a~~~~~~~-~~~~~YPlvt~~~~~--~~ 515 (878)
T PRK09694 441 SVLIVDEVHAYDAYMYGLLEAVLKAQAQ--AGGSVILLSATLPATLKQKLLDTYGGHDPV-ELSSAYPLITWRGVN--GA 515 (878)
T ss_pred CeEEEechhhCCHHHHHHHHHHHHHHHh--cCCcEEEEeCCCCHHHHHHHHHHhcccccc-ccccccccccccccc--cc
Confidence 5899999997555544 33444554433 346799999999876533332 221111 111123321110000 00
Q ss_pred hhcccCcccccccccccccccccchhhhHhhhhhcccccccccchhhhhHhhHhhhhhhhhchHHHHHHHHHHHhc-cCC
Q 002552 476 TRYKMNSKLDSFQGNSRRSRRQDSKKDHLTALFEDVDIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICRH-EGD 554 (908)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~-~~~ 554 (908)
..+......... ... . .+.+... ......+ ...++..+.+. ..+
T Consensus 516 ~~~~~~~~~~~~----~~~-~-------------~v~v~~~--------------~~~~~~~---~~~~l~~i~~~~~~g 560 (878)
T PRK09694 516 QRFDLSAHPEQL----PAR-F-------------TIQLEPI--------------CLADMLP---DLTLLQRMIAAANAG 560 (878)
T ss_pred eeeecccccccc----Ccc-e-------------EEEEEee--------------ccccccC---HHHHHHHHHHHHhcC
Confidence 000000000000 000 0 0000000 0000000 01222222221 346
Q ss_pred CcEEEecCCHHHHHHHHHHHHhcccCCCCCceEEEeccCCCChHhH----HhhhCCC-CCCC---cEEEEeccccccccC
Q 002552 555 GAILVFLTGWNDISKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQ----REIFDRP-PPNK---RKIVLATNIAESSIT 626 (908)
Q Consensus 555 g~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lH~~l~~~er----~~v~~~f-~~g~---~kIlvaT~iae~Gid 626 (908)
+++||||||.+.+..+++.|++... ....+..+||.+++.+| +++++.| ++|+ .+|||||+|+|+|||
T Consensus 561 ~~vLVf~NTV~~Aq~ly~~L~~~~~----~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLD 636 (878)
T PRK09694 561 AQVCLICNLVDDAQKLYQRLKELNN----TQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLD 636 (878)
T ss_pred CEEEEEECCHHHHHHHHHHHHhhCC----CCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheee
Confidence 7899999999999999999986321 24578999999999998 4567777 6666 479999999999999
Q ss_pred CCCeEEEEeCCCccceeeccccCccccccccccHhhHHHhccccCCC
Q 002552 627 IDDVVYVVDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRV 673 (908)
Q Consensus 627 Ip~v~~VId~g~~k~~~yd~~~~~~~l~~~~iS~~~~~QR~GRaGR~ 673 (908)
| +++++|....| .++++||+||+||.
T Consensus 637 I-d~DvlItdlaP--------------------idsLiQRaGR~~R~ 662 (878)
T PRK09694 637 L-DFDWLITQLCP--------------------VDLLFQRLGRLHRH 662 (878)
T ss_pred c-CCCeEEECCCC--------------------HHHHHHHHhccCCC
Confidence 9 58888864333 34899999999998
No 93
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.91 E-value=5.4e-24 Score=209.54 Aligned_cols=282 Identities=13% Similarity=0.185 Sum_probs=185.3
Q ss_pred cCCCchHHHHHHHHHHHhCCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCC
Q 002552 279 EKLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENL 358 (908)
Q Consensus 279 ~~lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~~~~~~~ 358 (908)
..--+...|.++||...-|-+++.+|..|-|||..|.+.-++.+-. ......++|++.||+||-||.++...+...-.
T Consensus 61 gfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiep--v~g~vsvlvmchtrelafqi~~ey~rfskymP 138 (387)
T KOG0329|consen 61 GFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEP--VDGQVSVLVMCHTRELAFQISKEYERFSKYMP 138 (387)
T ss_pred cCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCC--CCCeEEEEEEeccHHHHHHHHHHHHHHHhhCC
Confidence 3344567999999999999999999999999999999988887643 22356789999999999999765544432222
Q ss_pred C--CEEe---EEeecccc-CCCCCcEEEEchHHHHHHHhcCC-CCCcceEEEEechhccchhhHHHHHHHHHHCccCCCC
Q 002552 359 G--ETVG---YQIRLESK-RSAQTRLLFCTTGVLLRQLVEDP-DLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDL 431 (908)
Q Consensus 359 g--~~vg---~~~~~~~~-~~~~~~Iiv~T~g~Ll~~l~~~~-~l~~~~~iIiDEaHeR~~~~d~ll~~lk~~~~~~~~~ 431 (908)
+ ..|- ..+..+.. ...-++|+|+|||+++.+.++.. .|+++.|.|+|||+..--..|....+-........+-
T Consensus 139 ~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcdkmle~lDMrRDvQEifr~tp~~K 218 (387)
T KOG0329|consen 139 SVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECDKMLEQLDMRRDVQEIFRMTPHEK 218 (387)
T ss_pred CceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhccCchhhcceeehhhHHHHHHHHHHHHHHHHHhhcCcccc
Confidence 2 2232 22333222 23367999999999999998877 8999999999999953222333333322222344578
Q ss_pred cEEEecccCChHH---HHhhhCCCCccccCCcc----ccceeeehhhHHHhhhcccCcccccccccccccccccchhhhH
Q 002552 432 RLILMSATINADL---FSKYFGNAPTVHIPGLT----FPVTDLFLEDVLEKTRYKMNSKLDSFQGNSRRSRRQDSKKDHL 504 (908)
Q Consensus 432 qiIlmSAT~~~~~---~~~~f~~~~~i~v~~~~----~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (908)
|+.++|||+..+. ..+|+.++-.+.+.... +.+..+|+.
T Consensus 219 QvmmfsatlskeiRpvC~kFmQdPmEi~vDdE~KLtLHGLqQ~Yvk---------------------------------- 264 (387)
T KOG0329|consen 219 QVMMFSATLSKEIRPVCHKFMQDPMEIFVDDEAKLTLHGLQQYYVK---------------------------------- 264 (387)
T ss_pred eeeeeeeecchhhHHHHHhhhcCchhhhccchhhhhhhhHHHHHHh----------------------------------
Confidence 9999999998774 33444333323222110 111111110
Q ss_pred hhhhhcccccccccchhhhhHhhHhhhhhhhhchHHHHHHHHHHHhccCCCcEEEecCCHHHHHHHHHHHHhcccCCCCC
Q 002552 505 TALFEDVDIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICRHEGDGAILVFLTGWNDISKLLDQIKVNKFLGDPN 584 (908)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~~~~~ 584 (908)
...... ...+.+++. ...-.+++||+.+...+
T Consensus 265 ---------------Lke~eK------------Nrkl~dLLd----~LeFNQVvIFvKsv~Rl----------------- 296 (387)
T KOG0329|consen 265 ---------------LKENEK------------NRKLNDLLD----VLEFNQVVIFVKSVQRL----------------- 296 (387)
T ss_pred ---------------hhhhhh------------hhhhhhhhh----hhhhcceeEeeehhhhh-----------------
Confidence 000000 000112222 22335689998764320
Q ss_pred ceEEEeccCCCChHhHHhhhCCCCCCCcEEEEeccccccccCCCCeEEEEeCCCccceeeccccCccccccccccHhhHH
Q 002552 585 KFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETSYDALNKLACLLPSWISKASAH 664 (908)
Q Consensus 585 ~~~v~~lH~~l~~~er~~v~~~f~~g~~kIlvaT~iae~GidIp~v~~VId~g~~k~~~yd~~~~~~~l~~~~iS~~~~~ 664 (908)
+ | .++ +|||++..||+||.-|+.|||||+|... .+|.
T Consensus 297 -----------~----------f--~kr--~vat~lfgrgmdiervNi~~NYdmp~~~------------------DtYl 333 (387)
T KOG0329|consen 297 -----------S----------F--QKR--LVATDLFGRGMDIERVNIVFNYDMPEDS------------------DTYL 333 (387)
T ss_pred -----------h----------h--hhh--hHHhhhhccccCcccceeeeccCCCCCc------------------hHHH
Confidence 0 2 123 8999999999999999999999999944 4999
Q ss_pred HhccccCCC-CCcEEEEecChhhH
Q 002552 665 QRRGRAGRV-QPGVCYKLYPRIIH 687 (908)
Q Consensus 665 QR~GRaGR~-~~G~~~~l~~~~~~ 687 (908)
||.|||||. ..|.++.+.+.+..
T Consensus 334 Hrv~rAgrfGtkglaitfvs~e~d 357 (387)
T KOG0329|consen 334 HRVARAGRFGTKGLAITFVSDEND 357 (387)
T ss_pred HHhhhhhccccccceeehhcchhh
Confidence 999999999 66999999886543
No 94
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.91 E-value=9.8e-23 Score=232.87 Aligned_cols=322 Identities=16% Similarity=0.155 Sum_probs=195.7
Q ss_pred cCCCchHHHHHHHHHHHh----CCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHh
Q 002552 279 EKLPAFKMKAEFLKAVAE----NQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSER 354 (908)
Q Consensus 279 ~~lpi~~~Q~~~i~~i~~----~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~~~ 354 (908)
....+.+||+++++++.+ ++..++++|||+|||..+...+.+. ...+||++||++|+.|.++++.+..
T Consensus 33 ~~~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~--------~~~~Lvlv~~~~L~~Qw~~~~~~~~ 104 (442)
T COG1061 33 FEFELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAEL--------KRSTLVLVPTKELLDQWAEALKKFL 104 (442)
T ss_pred cCCCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHh--------cCCEEEEECcHHHHHHHHHHHHHhc
Confidence 345678999999999998 8999999999999997776665543 2238899999999999998887776
Q ss_pred CCCCCCEEeEEeeccccCCCCCcEEEEchHHHHHHH-hcCCCCCcceEEEEechhccchhhHHHHHHHHHHCccCCCCcE
Q 002552 355 GENLGETVGYQIRLESKRSAQTRLLFCTTGVLLRQL-VEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRL 433 (908)
Q Consensus 355 ~~~~g~~vg~~~~~~~~~~~~~~Iiv~T~g~Ll~~l-~~~~~l~~~~~iIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qi 433 (908)
... ..+|.--........ ..|+|+|...+.+.- ......+++++||+||||+...+. ...+...+....+ +
T Consensus 105 ~~~--~~~g~~~~~~~~~~~-~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~~--~~~~~~~~~~~~~---~ 176 (442)
T COG1061 105 LLN--DEIGIYGGGEKELEP-AKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPS--YRRILELLSAAYP---R 176 (442)
T ss_pred CCc--cccceecCceeccCC-CcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcHH--HHHHHHhhhcccc---e
Confidence 553 122221111111111 479999999998862 222234579999999999643322 2223333322222 9
Q ss_pred EEecccCChHH------HHhhhCCCCccccC-------CccccceeeehhhHHHhhhcccCcccccccccccccccccch
Q 002552 434 ILMSATINADL------FSKYFGNAPTVHIP-------GLTFPVTDLFLEDVLEKTRYKMNSKLDSFQGNSRRSRRQDSK 500 (908)
Q Consensus 434 IlmSAT~~~~~------~~~~f~~~~~i~v~-------~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (908)
++||||+.... +..+++ ..+..+. +...|......... . ... ....
T Consensus 177 LGLTATp~R~D~~~~~~l~~~~g-~~vy~~~~~~li~~g~Lap~~~~~i~~~--------------~---t~~---~~~~ 235 (442)
T COG1061 177 LGLTATPEREDGGRIGDLFDLIG-PIVYEVSLKELIDEGYLAPYKYVEIKVT--------------L---TED---EERE 235 (442)
T ss_pred eeeccCceeecCCchhHHHHhcC-CeEeecCHHHHHhCCCccceEEEEEEec--------------c---chH---HHHH
Confidence 99999974222 222222 1111111 11111111000000 0 000 0000
Q ss_pred hhhHhhhhhcccccccccchhhhhHhhHhhhhh---hhhchHHHHHHHHHHHhcc-CCCcEEEecCCHHHHHHHHHHHHh
Q 002552 501 KDHLTALFEDVDIDSNYKNYRASTRASLEAWSA---EQIDLGLVESTIEYICRHE-GDGAILVFLTGWNDISKLLDQIKV 576 (908)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~li~~~l~~i~~~~-~~g~iLVF~~~~~~i~~l~~~L~~ 576 (908)
.......+.. +. ........+.. ...........+..+.... ...++|||+.....+..++..+..
T Consensus 236 ~~~~~~~~~~---------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~ 305 (442)
T COG1061 236 YAKESARFRE---------LL-RARGTLRAENEARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLA 305 (442)
T ss_pred hhhhhhhhhh---------hh-hhhhhhhHHHHHHHHhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcC
Confidence 0000000000 00 00000000000 0000011112222222222 466899999999999999998876
Q ss_pred cccCCCCCceEEEeccCCCChHhHHhhhCCCCCCCcEEEEeccccccccCCCCeEEEEeCCCccceeeccccCccccccc
Q 002552 577 NKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETSYDALNKLACLLPS 656 (908)
Q Consensus 577 ~~~~~~~~~~~v~~lH~~l~~~er~~v~~~f~~g~~kIlvaT~iae~GidIp~v~~VId~g~~k~~~yd~~~~~~~l~~~ 656 (908)
... +..+.+..++.+|..+++.|+.|.+++||++.|+.+|+|+|+++++|......
T Consensus 306 -------~~~-~~~it~~t~~~eR~~il~~fr~g~~~~lv~~~vl~EGvDiP~~~~~i~~~~t~---------------- 361 (442)
T COG1061 306 -------PGI-VEAITGETPKEEREAILERFRTGGIKVLVTVKVLDEGVDIPDADVLIILRPTG---------------- 361 (442)
T ss_pred -------CCc-eEEEECCCCHHHHHHHHHHHHcCCCCEEEEeeeccceecCCCCcEEEEeCCCC----------------
Confidence 233 77799999999999999999999999999999999999999999999876666
Q ss_pred cccHhhHHHhccccCCC
Q 002552 657 WISKASAHQRRGRAGRV 673 (908)
Q Consensus 657 ~iS~~~~~QR~GRaGR~ 673 (908)
|+..|.||+||.=|.
T Consensus 362 --S~~~~~Q~lGR~LR~ 376 (442)
T COG1061 362 --SRRLFIQRLGRGLRP 376 (442)
T ss_pred --cHHHHHHHhhhhccC
Confidence 778999999999996
No 95
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.91 E-value=8.6e-24 Score=253.28 Aligned_cols=307 Identities=19% Similarity=0.172 Sum_probs=211.6
Q ss_pred HHHHHHHHHHHhCCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCCEEeE
Q 002552 285 KMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLGETVGY 364 (908)
Q Consensus 285 ~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~~~~~~~g~~vg~ 364 (908)
+-|.++|.+++.|++++|.+|||.||++++.+|.+-. .+..||+.|...|...+...+.. .+......-+-
T Consensus 267 ~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~--------~gitvVISPL~SLm~DQv~~L~~-~~I~a~~L~s~ 337 (941)
T KOG0351|consen 267 PNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLL--------GGVTVVISPLISLMQDQVTHLSK-KGIPACFLSSI 337 (941)
T ss_pred hhHHHHHHHHHcCCceEEEeecCCceeeEeecccccc--------CCceEEeccHHHHHHHHHHhhhh-cCcceeecccc
Confidence 5799999999999999999999999998887775532 23788999999998877666522 22221111111
Q ss_pred Eee-----c---cccCCCCCcEEEEchHHHHHHHh---cCCCCCc---ceEEEEechhccc-hhhHHHHHHH--HHHCcc
Q 002552 365 QIR-----L---ESKRSAQTRLLFCTTGVLLRQLV---EDPDLSC---VSHLLVDEIHERG-MNEDFLLIIL--RDLLPR 427 (908)
Q Consensus 365 ~~~-----~---~~~~~~~~~Iiv~T~g~Ll~~l~---~~~~l~~---~~~iIiDEaHeR~-~~~d~ll~~l--k~~~~~ 427 (908)
+.. . ........+|+|.||+.+...-. ....|.. +..+||||||.-. +-.||-.... ..+..+
T Consensus 338 q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqWgHdFRp~Yk~l~~l~~~ 417 (941)
T KOG0351|consen 338 QTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQWGHDFRPSYKRLGLLRIR 417 (941)
T ss_pred ccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhhcccccHHHHHHHHHHhh
Confidence 111 0 01112368999999997653211 1113344 8999999999632 3345544432 334456
Q ss_pred CCCCcEEEecccCChHHHHh---hhC--CCCccccCCccccceeeehhhHHHhhhcccCcccccccccccccccccchhh
Q 002552 428 RPDLRLILMSATINADLFSK---YFG--NAPTVHIPGLTFPVTDLFLEDVLEKTRYKMNSKLDSFQGNSRRSRRQDSKKD 502 (908)
Q Consensus 428 ~~~~qiIlmSAT~~~~~~~~---~f~--~~~~i~v~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (908)
.+.+-+|.+|||.....-.+ -++ ++.++. . .+.-...|++ +. .+.
T Consensus 418 ~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~-~--sfnR~NL~ye---------V~-----------------~k~- 467 (941)
T KOG0351|consen 418 FPGVPFIALTATATERVREDVIRSLGLRNPELFK-S--SFNRPNLKYE---------VS-----------------PKT- 467 (941)
T ss_pred CCCCCeEEeehhccHHHHHHHHHHhCCCCcceec-c--cCCCCCceEE---------EE-----------------ecc-
Confidence 67789999999986554332 222 111110 0 0000000000 00 000
Q ss_pred hHhhhhhcccccccccchhhhhHhhHhhhhhhhhchHHHHHHHHHHHhccCCCcEEEecCCHHHHHHHHHHHHhcccCCC
Q 002552 503 HLTALFEDVDIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICRHEGDGAILVFLTGWNDISKLLDQIKVNKFLGD 582 (908)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~~~ 582 (908)
+.+.....+..+....+.+.+||+|.++.+++.++..|..
T Consensus 468 ----------------------------------~~~~~~~~~~~~~~~~~~~s~IIYC~sr~~ce~vs~~L~~------ 507 (941)
T KOG0351|consen 468 ----------------------------------DKDALLDILEESKLRHPDQSGIIYCLSRKECEQVSAVLRS------ 507 (941)
T ss_pred ----------------------------------CccchHHHHHHhhhcCCCCCeEEEeCCcchHHHHHHHHHH------
Confidence 0001223334444456778999999999999999999998
Q ss_pred CCceEEEeccCCCChHhHHhhhCCCCCCCcEEEEeccccccccCCCCeEEEEeCCCccceeeccccCccccccccccHhh
Q 002552 583 PNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETSYDALNKLACLLPSWISKAS 662 (908)
Q Consensus 583 ~~~~~v~~lH~~l~~~er~~v~~~f~~g~~kIlvaT~iae~GidIp~v~~VId~g~~k~~~yd~~~~~~~l~~~~iS~~~ 662 (908)
.++....+|++|+..+|+.|.+.|-.++.+|||||=.+.+|||.|||++||++++|| |.+.
T Consensus 508 -~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~ViH~~lPk------------------s~E~ 568 (941)
T KOG0351|consen 508 -LGKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFVIHYSLPK------------------SFEG 568 (941)
T ss_pred -hchhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeEEEECCCch------------------hHHH
Confidence 456677899999999999999999999999999999999999999999999999999 7779
Q ss_pred HHHhccccCCC-CCcEEEEecChhhHhh
Q 002552 663 AHQRRGRAGRV-QPGVCYKLYPRIIHDA 689 (908)
Q Consensus 663 ~~QR~GRaGR~-~~G~~~~l~~~~~~~~ 689 (908)
|.|-+|||||. .+-.|..||+-.++..
T Consensus 569 YYQE~GRAGRDG~~s~C~l~y~~~D~~~ 596 (941)
T KOG0351|consen 569 YYQEAGRAGRDGLPSSCVLLYGYADISE 596 (941)
T ss_pred HHHhccccCcCCCcceeEEecchhHHHH
Confidence 99999999999 7899999999877654
No 96
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.90 E-value=1.9e-22 Score=227.86 Aligned_cols=301 Identities=19% Similarity=0.241 Sum_probs=214.2
Q ss_pred CCCchHHHHHHHHHHHhC------CeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHH
Q 002552 280 KLPAFKMKAEFLKAVAEN------QVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSE 353 (908)
Q Consensus 280 ~lpi~~~Q~~~i~~i~~~------~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~~ 353 (908)
++.++..|+.++.-|... -+=+++|.-|||||..+.+.++..+-. +..+...+||-+||.|-+..+++.
T Consensus 260 PF~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~-----G~Q~ALMAPTEILA~QH~~~~~~~ 334 (677)
T COG1200 260 PFKLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEA-----GYQAALMAPTEILAEQHYESLRKW 334 (677)
T ss_pred CCCccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHc-----CCeeEEeccHHHHHHHHHHHHHHH
Confidence 345889999999988753 134889999999999888888876532 457888899999999999999876
Q ss_pred hCCCCCCEEeEEeec----------cccCCCCCcEEEEchHHHHHHHhcCCCCCcceEEEEechhccchhhHHHHHHHHH
Q 002552 354 RGENLGETVGYQIRL----------ESKRSAQTRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRD 423 (908)
Q Consensus 354 ~~~~~g~~vg~~~~~----------~~~~~~~~~Iiv~T~g~Ll~~l~~~~~l~~~~~iIiDEaHeR~~~~d~ll~~lk~ 423 (908)
+. ..|..|++-+.. +...+...+|+|.|...+- .+-.+.++.++|+||-|.-|+..- ..
T Consensus 335 l~-~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQ----d~V~F~~LgLVIiDEQHRFGV~QR------~~ 403 (677)
T COG1200 335 LE-PLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQ----DKVEFHNLGLVIIDEQHRFGVHQR------LA 403 (677)
T ss_pred hh-hcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhh----cceeecceeEEEEeccccccHHHH------HH
Confidence 54 345556654322 1122446899999985333 233789999999999995455432 22
Q ss_pred HCccCC-CCcEEEecccC-ChHHHHhhhCCCCcccc---CCccccceeeehhhHHHhhhcccCccccccccccccccccc
Q 002552 424 LLPRRP-DLRLILMSATI-NADLFSKYFGNAPTVHI---PGLTFPVTDLFLEDVLEKTRYKMNSKLDSFQGNSRRSRRQD 498 (908)
Q Consensus 424 ~~~~~~-~~qiIlmSAT~-~~~~~~~~f~~~~~i~v---~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (908)
+..+.. .+.+++||||+ |.......|++..+-.+ |.-..|+....+.+-
T Consensus 404 L~~KG~~~Ph~LvMTATPIPRTLAlt~fgDldvS~IdElP~GRkpI~T~~i~~~-------------------------- 457 (677)
T COG1200 404 LREKGEQNPHVLVMTATPIPRTLALTAFGDLDVSIIDELPPGRKPITTVVIPHE-------------------------- 457 (677)
T ss_pred HHHhCCCCCcEEEEeCCCchHHHHHHHhccccchhhccCCCCCCceEEEEeccc--------------------------
Confidence 333444 58999999997 66777788887554333 333456665554210
Q ss_pred chhhhHhhhhhcccccccccchhhhhHhhHhhhhhhhhchHHHHHHHHHHHhc-cCCCcEEEecCCHHHH--------HH
Q 002552 499 SKKDHLTALFEDVDIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICRH-EGDGAILVFLTGWNDI--------SK 569 (908)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~-~~~g~iLVF~~~~~~i--------~~ 569 (908)
. ...++..+... ..+.++.|-||=.++- ..
T Consensus 458 -~----------------------------------------~~~v~e~i~~ei~~GrQaY~VcPLIeESE~l~l~~a~~ 496 (677)
T COG1200 458 -R----------------------------------------RPEVYERIREEIAKGRQAYVVCPLIEESEKLELQAAEE 496 (677)
T ss_pred -c----------------------------------------HHHHHHHHHHHHHcCCEEEEEeccccccccchhhhHHH
Confidence 0 01111111111 2456788888865554 45
Q ss_pred HHHHHHhcccCCCCCceEEEeccCCCChHhHHhhhCCCCCCCcEEEEeccccccccCCCCeEEEEeCCCccceeeccccC
Q 002552 570 LLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETSYDALNK 649 (908)
Q Consensus 570 l~~~L~~~~~~~~~~~~~v~~lH~~l~~~er~~v~~~f~~g~~kIlvaT~iae~GidIp~v~~VId~g~~k~~~yd~~~~ 649 (908)
+++.|.. .+ .++.|..+||.|+.+|+++|++.|++|+.+|||||.|.|-|||+|+.++.|-.+..+
T Consensus 497 ~~~~L~~-~~----~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVIEVGVdVPnATvMVIe~AER--------- 562 (677)
T COG1200 497 LYEELKS-FL----PELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTVIEVGVDVPNATVMVIENAER--------- 562 (677)
T ss_pred HHHHHHH-Hc----ccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEeeEEEecccCCCCeEEEEechhh---------
Confidence 5566652 22 578899999999999999999999999999999999999999999999988643332
Q ss_pred ccccccccccHhhHHHhccccCCC-CCcEEEEecChh
Q 002552 650 LACLLPSWISKASAHQRRGRAGRV-QPGVCYKLYPRI 685 (908)
Q Consensus 650 ~~~l~~~~iS~~~~~QR~GRaGR~-~~G~~~~l~~~~ 685 (908)
.--++..|-+||.||- ..+.|+.+|...
T Consensus 563 --------FGLaQLHQLRGRVGRG~~qSyC~Ll~~~~ 591 (677)
T COG1200 563 --------FGLAQLHQLRGRVGRGDLQSYCVLLYKPP 591 (677)
T ss_pred --------hhHHHHHHhccccCCCCcceEEEEEeCCC
Confidence 1445788999999999 789999999753
No 97
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.90 E-value=5.8e-22 Score=245.37 Aligned_cols=356 Identities=18% Similarity=0.265 Sum_probs=203.6
Q ss_pred CCchHHHHHHHHHHHh-----CCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhC
Q 002552 281 LPAFKMKAEFLKAVAE-----NQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERG 355 (908)
Q Consensus 281 lpi~~~Q~~~i~~i~~-----~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~~~~ 355 (908)
+.+.+||.+++..+.+ .+..+++++||||||..+...+. .++.. +...+||+++||++|+.|..+.+.....
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~-~L~~~--~~~~rVLfLvDR~~L~~Qa~~~F~~~~~ 488 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMY-RLLKA--KRFRRILFLVDRSALGEQAEDAFKDTKI 488 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHH-HHHhc--CccCeEEEEecHHHHHHHHHHHHHhccc
Confidence 4678899999987752 46799999999999965544443 33332 2245899999999999999988866421
Q ss_pred CCCCCEE--eEEee-c-cccCCCCCcEEEEchHHHHHHHhcC------CCCCcceEEEEechhccchhh-----------
Q 002552 356 ENLGETV--GYQIR-L-ESKRSAQTRLLFCTTGVLLRQLVED------PDLSCVSHLLVDEIHERGMNE----------- 414 (908)
Q Consensus 356 ~~~g~~v--g~~~~-~-~~~~~~~~~Iiv~T~g~Ll~~l~~~------~~l~~~~~iIiDEaHeR~~~~----------- 414 (908)
..+..+ -|.+. . +........|+|+|.+.|.+.+... +.+..+++||||||| |+...
T Consensus 489 -~~~~~~~~i~~i~~L~~~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaH-Rs~~~d~~~~~~~~~~ 566 (1123)
T PRK11448 489 -EGDQTFASIYDIKGLEDKFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAH-RGYTLDKEMSEGELQF 566 (1123)
T ss_pred -ccccchhhhhchhhhhhhcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCC-CCCccccccccchhcc
Confidence 111111 01111 0 1112335799999999988775321 257889999999999 76421
Q ss_pred ----HHHHHHHHHHCccCCCCcEEEecccCChHHHHhhhCCCCccccCCccccceeeehhhHHHhhhcccCc-ccccccc
Q 002552 415 ----DFLLIILRDLLPRRPDLRLILMSATINADLFSKYFGNAPTVHIPGLTFPVTDLFLEDVLEKTRYKMNS-KLDSFQG 489 (908)
Q Consensus 415 ----d~ll~~lk~~~~~~~~~qiIlmSAT~~~~~~~~~f~~~~~i~v~~~~~~v~~~~l~~~~~~~~~~~~~-~~~~~~~ 489 (908)
++. ...+.++. ..+...|+||||+... -.++|+. | +..+-+.+.+... +.... ..-.+..
T Consensus 567 ~~~~~~~-~~yr~iL~-yFdA~~IGLTATP~r~-t~~~FG~-p----------v~~Ysl~eAI~DG-~Lv~~~~p~~i~t 631 (1123)
T PRK11448 567 RDQLDYV-SKYRRVLD-YFDAVKIGLTATPALH-TTEIFGE-P----------VYTYSYREAVIDG-YLIDHEPPIRIET 631 (1123)
T ss_pred chhhhHH-HHHHHHHh-hcCccEEEEecCCccc-hhHHhCC-e----------eEEeeHHHHHhcC-CcccCcCCEEEEE
Confidence 112 22344444 3356789999998643 3456653 2 2222222222211 00000 0000000
Q ss_pred c-----ccccccc-cchhhhHhhhhhcccccccccchhhhhHhhHhhhhhhhhc----hHHHHHHHHHHHhccCCCcEEE
Q 002552 490 N-----SRRSRRQ-DSKKDHLTALFEDVDIDSNYKNYRASTRASLEAWSAEQID----LGLVESTIEYICRHEGDGAILV 559 (908)
Q Consensus 490 ~-----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~li~~~l~~i~~~~~~g~iLV 559 (908)
. ....... ....+.....+........ ..|. ...++...+. ...+..++.++ ....++++||
T Consensus 632 ~~~~~gi~~~~~e~~~~~~~~~~~i~~~~l~d~-~~~~------~~~~~~~vi~~~~~~~i~~~l~~~l-~~~~~~KtiI 703 (1123)
T PRK11448 632 RLSQEGIHFEKGEEVEVINTQTGEIDLATLEDE-VDFE------VEDFNRRVITESFNRVVCEELAKYL-DPTGEGKTLI 703 (1123)
T ss_pred EeccccccccccchhhhcchhhhhhhhccCcHH-Hhhh------HHHHHHHHhhHHHHHHHHHHHHHHH-hccCCCcEEE
Confidence 0 0000000 0000000000000000000 0000 0000000000 01122333333 2234589999
Q ss_pred ecCCHHHHHHHHHHHHhccc--CCCCCceEEEeccCCCChHhHHhhhCCCCCCCc-EEEEeccccccccCCCCeEEEEeC
Q 002552 560 FLTGWNDISKLLDQIKVNKF--LGDPNKFLVLPLHGSMPTINQREIFDRPPPNKR-KIVLATNIAESSITIDDVVYVVDC 636 (908)
Q Consensus 560 F~~~~~~i~~l~~~L~~~~~--~~~~~~~~v~~lH~~l~~~er~~v~~~f~~g~~-kIlvaT~iae~GidIp~v~~VId~ 636 (908)
||.+.++++.+++.|.+... ........+..+||+.+ +++.+++.|+++.. +|+|+++++.+|+|+|.|.+||..
T Consensus 704 F~~s~~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf~ 781 (1123)
T PRK11448 704 FAATDAHADMVVRLLKEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVFL 781 (1123)
T ss_pred EEcCHHHHHHHHHHHHHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccccEEEEe
Confidence 99999999999988875310 01112234566888875 45678999999876 799999999999999999999998
Q ss_pred CCccceeeccccCccccccccccHhhHHHhccccCCCCC--cE-EEEecCh
Q 002552 637 GKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRVQP--GV-CYKLYPR 684 (908)
Q Consensus 637 g~~k~~~yd~~~~~~~l~~~~iS~~~~~QR~GRaGR~~~--G~-~~~l~~~ 684 (908)
..++ |+..|+||+||+.|..+ |+ ++.+|+-
T Consensus 782 rpvk------------------S~~lf~QmIGRgtR~~~~~~K~~f~I~D~ 814 (1123)
T PRK11448 782 RRVR------------------SRILYEQMLGRATRLCPEIGKTHFRIFDA 814 (1123)
T ss_pred cCCC------------------CHHHHHHHHhhhccCCccCCCceEEEEeh
Confidence 8887 88899999999999966 43 4555553
No 98
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.89 E-value=1.3e-21 Score=201.30 Aligned_cols=296 Identities=18% Similarity=0.244 Sum_probs=195.6
Q ss_pred HHHHHHHHhCCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCCEEeEEee
Q 002552 288 AEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLGETVGYQIR 367 (908)
Q Consensus 288 ~~~i~~i~~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~~~~~~~g~~vg~~~~ 367 (908)
..++..+.+.++++|.|-||+|||-.+.+-|-..+ . .+.+|.+..||...+.+++.|+.+-+... +...-|+
T Consensus 107 ~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al-~----~G~~vciASPRvDVclEl~~Rlk~aF~~~-~I~~Lyg-- 178 (441)
T COG4098 107 NQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQAL-N----QGGRVCIASPRVDVCLELYPRLKQAFSNC-DIDLLYG-- 178 (441)
T ss_pred HHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHH-h----cCCeEEEecCcccchHHHHHHHHHhhccC-CeeeEec--
Confidence 34677788899999999999999976655554432 2 25688889999999999999998876521 2222222
Q ss_pred ccccCCCCCcEEEEchHHHHHHHhcCCCCCcceEEEEechhccchhhHHHHH-HHHHHCccCCCCcEEEecccCChHHHH
Q 002552 368 LESKRSAQTRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLI-ILRDLLPRRPDLRLILMSATINADLFS 446 (908)
Q Consensus 368 ~~~~~~~~~~Iiv~T~g~Ll~~l~~~~~l~~~~~iIiDEaHeR~~~~d~ll~-~lk~~~~~~~~~qiIlmSAT~~~~~~~ 446 (908)
++...-.+.++|||...|+++- +.++++||||+|---...|-.+. .++.. +.+.--+|.||||.+.+.-.
T Consensus 179 -~S~~~fr~plvVaTtHQLlrFk------~aFD~liIDEVDAFP~~~d~~L~~Av~~a--rk~~g~~IylTATp~k~l~r 249 (441)
T COG4098 179 -DSDSYFRAPLVVATTHQLLRFK------QAFDLLIIDEVDAFPFSDDQSLQYAVKKA--RKKEGATIYLTATPTKKLER 249 (441)
T ss_pred -CCchhccccEEEEehHHHHHHH------hhccEEEEeccccccccCCHHHHHHHHHh--hcccCceEEEecCChHHHHH
Confidence 1111123789999999999876 57899999999965444443333 23332 33456789999998876655
Q ss_pred hhhCC-CCccccCCcc----ccceeeehhhHHHhhhcccCcccccccccccccccccchhhhHhhhhhcccccccccchh
Q 002552 447 KYFGN-APTVHIPGLT----FPVTDLFLEDVLEKTRYKMNSKLDSFQGNSRRSRRQDSKKDHLTALFEDVDIDSNYKNYR 521 (908)
Q Consensus 447 ~~f~~-~~~i~v~~~~----~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 521 (908)
+...+ ...+.++.|. .|+..+..-. .|. ..+
T Consensus 250 ~~~~g~~~~~klp~RfH~~pLpvPkf~w~~--------------------~~~-----------k~l------------- 285 (441)
T COG4098 250 KILKGNLRILKLPARFHGKPLPVPKFVWIG--------------------NWN-----------KKL------------- 285 (441)
T ss_pred HhhhCCeeEeecchhhcCCCCCCCceEEec--------------------cHH-----------HHh-------------
Confidence 54432 2334454432 2232211000 000 000
Q ss_pred hhhHhhHhhhhhhhhchHHHHHHHHHHHhc-cCCCcEEEecCCHHHHHHHHHHHHhcccCCCCCceEEEeccCCCChHhH
Q 002552 522 ASTRASLEAWSAEQIDLGLVESTIEYICRH-EGDGAILVFLTGWNDISKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQ 600 (908)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~li~~~l~~i~~~-~~~g~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lH~~l~~~er 600 (908)
....+ -..++..|.+. ..+.++|||+|+.+..+.+++.|.... ....+...|+. ...|
T Consensus 286 ----------~r~kl----~~kl~~~lekq~~~~~P~liF~p~I~~~eq~a~~lk~~~-----~~~~i~~Vhs~--d~~R 344 (441)
T COG4098 286 ----------QRNKL----PLKLKRWLEKQRKTGRPVLIFFPEIETMEQVAAALKKKL-----PKETIASVHSE--DQHR 344 (441)
T ss_pred ----------hhccC----CHHHHHHHHHHHhcCCcEEEEecchHHHHHHHHHHHhhC-----Cccceeeeecc--CccH
Confidence 00000 11233333322 235689999999999999999996532 45567888886 4568
Q ss_pred HhhhCCCCCCCcEEEEeccccccccCCCCeEEEEeCCCccceeeccccCccccccccccHhhHHHhccccCCC--C-CcE
Q 002552 601 REIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRV--Q-PGV 677 (908)
Q Consensus 601 ~~v~~~f~~g~~kIlvaT~iae~GidIp~v~~VId~g~~k~~~yd~~~~~~~l~~~~iS~~~~~QR~GRaGR~--~-~G~ 677 (908)
.+..+.|++|+.+||++|.|+|||+|+|+|+++|-- -.. ..| |++..+|.+||+||. . .|.
T Consensus 345 ~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlg-aeh-~vf--------------TesaLVQIaGRvGRs~~~PtGd 408 (441)
T COG4098 345 KEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLG-AEH-RVF--------------TESALVQIAGRVGRSLERPTGD 408 (441)
T ss_pred HHHHHHHHcCceEEEEEeehhhcccccccceEEEec-CCc-ccc--------------cHHHHHHHhhhccCCCcCCCCc
Confidence 888899999999999999999999999999887741 111 122 888999999999998 3 476
Q ss_pred EEEe
Q 002552 678 CYKL 681 (908)
Q Consensus 678 ~~~l 681 (908)
.+-|
T Consensus 409 v~FF 412 (441)
T COG4098 409 VLFF 412 (441)
T ss_pred EEEE
Confidence 5444
No 99
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.89 E-value=8e-23 Score=235.25 Aligned_cols=349 Identities=20% Similarity=0.223 Sum_probs=218.6
Q ss_pred HhhcCCCchHHHHHHHH--HHHhCCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHH
Q 002552 276 SFREKLPAFKMKAEFLK--AVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSE 353 (908)
Q Consensus 276 ~~r~~lpi~~~Q~~~i~--~i~~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~~ 353 (908)
+....+..|..|.+.+. .+++++++|..+||+.|||++.-+.++...+... .+++.+.|-...+.+-...+..+
T Consensus 217 ~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~r----r~~llilp~vsiv~Ek~~~l~~~ 292 (1008)
T KOG0950|consen 217 KDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCRR----RNVLLILPYVSIVQEKISALSPF 292 (1008)
T ss_pred HhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHHh----hceeEecceeehhHHHHhhhhhh
Confidence 33444567778887764 4789999999999999999999988887776542 24566667666665555555443
Q ss_pred hCCCCCCEE-eEEeeccc-cCCCCCcEEEEchHH---HHHHHhcCCCCCcceEEEEechh-----ccchhhHHHHHHHHH
Q 002552 354 RGENLGETV-GYQIRLES-KRSAQTRLLFCTTGV---LLRQLVEDPDLSCVSHLLVDEIH-----ERGMNEDFLLIILRD 423 (908)
Q Consensus 354 ~~~~~g~~v-g~~~~~~~-~~~~~~~Iiv~T~g~---Ll~~l~~~~~l~~~~~iIiDEaH-----eR~~~~d~ll~~lk~ 423 (908)
...+|..| +|.-++.. ...+..++.+||.++ |.+.|.....+..++.|||||.| +|+...+.++.-+-.
T Consensus 293 -~~~~G~~ve~y~g~~~p~~~~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~~rg~~lE~~l~k~~y 371 (1008)
T KOG0950|consen 293 -SIDLGFPVEEYAGRFPPEKRRKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDKGRGAILELLLAKILY 371 (1008)
T ss_pred -ccccCCcchhhcccCCCCCcccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeeccccchHHHHHHHHHHH
Confidence 23344433 33322222 123467899999885 55555555578899999999999 355444433332221
Q ss_pred HCccCCCCcEEEecccC-ChHHHHhhhCCCCccccCCccccceeeehhhHHHhhhcccCcccccccccccccccccchhh
Q 002552 424 LLPRRPDLRLILMSATI-NADLFSKYFGNAPTVHIPGLTFPVTDLFLEDVLEKTRYKMNSKLDSFQGNSRRSRRQDSKKD 502 (908)
Q Consensus 424 ~~~~~~~~qiIlmSAT~-~~~~~~~~f~~~~~i~v~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (908)
. .....+|+|+||||+ |.+.+++||.. .+....-|+.|..++... ....|.. .+..
T Consensus 372 ~-~~~~~~~iIGMSATi~N~~lL~~~L~A-~~y~t~fRPv~L~E~ik~---G~~i~~~------------------~r~~ 428 (1008)
T KOG0950|consen 372 E-NLETSVQIIGMSATIPNNSLLQDWLDA-FVYTTRFRPVPLKEYIKP---GSLIYES------------------SRNK 428 (1008)
T ss_pred h-ccccceeEeeeecccCChHHHHHHhhh-hheecccCcccchhccCC---Ccccccc------------------hhhH
Confidence 1 223347899999999 66788888863 222222333333222110 0000000 0000
Q ss_pred hHhhhhhcccccccccchhhhhHhhHhhhhhhhhchHHHHHHHHHHHhccCCCcEEEecCCHHHHHHHHHHHHhc-----
Q 002552 503 HLTALFEDVDIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICRHEGDGAILVFLTGWNDISKLLDQIKVN----- 577 (908)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~~~~g~iLVF~~~~~~i~~l~~~L~~~----- 577 (908)
.+..+.. . + ......-|.|.+..+..... ..+.++|||||+++.++.++..+...
T Consensus 429 ~lr~ia~-l--------~---------~~~~g~~dpD~~v~L~tet~--~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~ 488 (1008)
T KOG0950|consen 429 VLREIAN-L--------Y---------SSNLGDEDPDHLVGLCTETA--PEGSSVLVFCPSKKNCENVASLIAKKVPKHI 488 (1008)
T ss_pred HHHHhhh-h--------h---------hhhcccCCCcceeeehhhhh--hcCCeEEEEcCcccchHHHHHHHHHHhhHhh
Confidence 0000000 0 0 00000001112222222211 12446999999999999888666431
Q ss_pred --------------------------ccCCCCCceEEEeccCCCChHhHHhhhCCCCCCCcEEEEeccccccccCCCCeE
Q 002552 578 --------------------------KFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVV 631 (908)
Q Consensus 578 --------------------------~~~~~~~~~~v~~lH~~l~~~er~~v~~~f~~g~~kIlvaT~iae~GidIp~v~ 631 (908)
........+.+++||++++.++|+.|...|+.|...|++||++++.|++.|..+
T Consensus 489 ~~e~~~~~~~~~s~s~~lr~~~~~ld~Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArR 568 (1008)
T KOG0950|consen 489 KSEKRLGLWELLSISNLLRRIPGILDPVLAKTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARR 568 (1008)
T ss_pred hhhhhhhHHHHHHHHhHhhcCCcccchHHheeccccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcce
Confidence 001123467899999999999999999999999999999999999999999999
Q ss_pred EEEeCCCccceeeccccCccccccccccHhhHHHhccccCCC---CCcEEEEecChhh
Q 002552 632 YVVDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRV---QPGVCYKLYPRII 686 (908)
Q Consensus 632 ~VId~g~~k~~~yd~~~~~~~l~~~~iS~~~~~QR~GRaGR~---~~G~~~~l~~~~~ 686 (908)
++|-+-+... ..++..+|.||+|||||+ .-|.++.++.+..
T Consensus 569 VIiraP~~g~--------------~~l~~~~YkQM~GRAGR~gidT~GdsiLI~k~~e 612 (1008)
T KOG0950|consen 569 VIIRAPYVGR--------------EFLTRLEYKQMVGRAGRTGIDTLGDSILIIKSSE 612 (1008)
T ss_pred eEEeCCcccc--------------chhhhhhHHhhhhhhhhcccccCcceEEEeeccc
Confidence 9997544432 224677999999999999 5699999998754
No 100
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.89 E-value=9.7e-23 Score=235.58 Aligned_cols=295 Identities=15% Similarity=0.168 Sum_probs=177.5
Q ss_pred EEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCCEEeEEeecc------ccCCC
Q 002552 301 VVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLGETVGYQIRLE------SKRSA 374 (908)
Q Consensus 301 ii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~~~~~~~g~~vg~~~~~~------~~~~~ 374 (908)
++.|+||||||..+...+.+.+ .. +.++|++.|+++|+.|+++++.+.++..+....+.....+ .....
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l-~~----g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g 75 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVL-AL----GKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNG 75 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHH-Hc----CCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcC
Confidence 4789999999988876655443 22 3479999999999999999998877643321111000000 11123
Q ss_pred CCcEEEEchHHHHHHHhcCCCCCcceEEEEechhccchhhHHHH----HHHHHHCccCCCCcEEEecccCChHHHHhhhC
Q 002552 375 QTRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLL----IILRDLLPRRPDLRLILMSATINADLFSKYFG 450 (908)
Q Consensus 375 ~~~Iiv~T~g~Ll~~l~~~~~l~~~~~iIiDEaHeR~~~~d~ll----~~lk~~~~~~~~~qiIlmSAT~~~~~~~~~f~ 450 (908)
..+|+|+|+..+.. .+.++++|||||+|+-+...+-.+ --+..+.....+.++|++|||+..+.+.....
T Consensus 76 ~~~IVVGTrsalf~------p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~~~~~~vil~SATPsles~~~~~~ 149 (505)
T TIGR00595 76 EILVVIGTRSALFL------PFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAKKFNCPVVLGSATPSLESYHNAKQ 149 (505)
T ss_pred CCCEEECChHHHcC------cccCCCEEEEECCCccccccccCCCCcHHHHHHHHHHhcCCCEEEEeCCCCHHHHHHHhc
Confidence 57899999986642 468899999999996332211000 00111222345789999999988776654432
Q ss_pred CC-CccccCCc----cccceeeehhhHHHhhhcccCcccccccccccccccccchhhhHhhhhhcccccccccchhhhhH
Q 002552 451 NA-PTVHIPGL----TFPVTDLFLEDVLEKTRYKMNSKLDSFQGNSRRSRRQDSKKDHLTALFEDVDIDSNYKNYRASTR 525 (908)
Q Consensus 451 ~~-~~i~v~~~----~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 525 (908)
+. ..+.++.+ ..|. ...+ |. . ......
T Consensus 150 g~~~~~~l~~r~~~~~~p~-v~vi-d~--------~---------------~~~~~~----------------------- 181 (505)
T TIGR00595 150 KAYRLLVLTRRVSGRKPPE-VKLI-DM--------R---------------KEPRQS----------------------- 181 (505)
T ss_pred CCeEEeechhhhcCCCCCe-EEEE-ec--------c---------------cccccC-----------------------
Confidence 21 11111111 1111 1110 00 0 000000
Q ss_pred hhHhhhhhhhhchHHHHHHHHHHHhccCCCcEEEecCCHHH---------------------------------------
Q 002552 526 ASLEAWSAEQIDLGLVESTIEYICRHEGDGAILVFLTGWND--------------------------------------- 566 (908)
Q Consensus 526 ~~~~~~~~~~~~~~li~~~l~~i~~~~~~g~iLVF~~~~~~--------------------------------------- 566 (908)
.+... +...+...+ ..++++|||+|++.-
T Consensus 182 ---------~ls~~-l~~~i~~~l--~~g~qvLvflnrrGya~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~ 249 (505)
T TIGR00595 182 ---------FLSPE-LITAIEQTL--AAGEQSILFLNRRGYSKNLLCRSCGYILCCPNCDVSLTYHKKEGKLRCHYCGYQ 249 (505)
T ss_pred ---------CccHH-HHHHHHHHH--HcCCcEEEEEeCCcCCCeeEhhhCcCccCCCCCCCceEEecCCCeEEcCCCcCc
Confidence 00001 112222222 234578888776432
Q ss_pred ---------------------HHHHHHHHHhcccCCCCCceEEEeccCCCChHhH--HhhhCCCCCCCcEEEEecccccc
Q 002552 567 ---------------------ISKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQ--REIFDRPPPNKRKIVLATNIAES 623 (908)
Q Consensus 567 ---------------------i~~l~~~L~~~~~~~~~~~~~v~~lH~~l~~~er--~~v~~~f~~g~~kIlvaT~iae~ 623 (908)
++.+.+.|.+.. .+..|..+|++++..++ +++++.|++|+.+|||+|+++++
T Consensus 250 ~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~f-----p~~~v~~~d~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~i~k 324 (505)
T TIGR00595 250 EPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLF-----PGARIARIDSDTTSRKGAHEALLNQFANGKADILIGTQMIAK 324 (505)
T ss_pred CCCCCCCCCCCCCeeEeecccHHHHHHHHHhhC-----CCCcEEEEecccccCccHHHHHHHHHhcCCCCEEEeCccccc
Confidence 455566665421 35679999999987766 88999999999999999999999
Q ss_pred ccCCCCeEEEE--eCCCccc-eeeccccCccccccccccHhhHHHhccccCCC-CCcEEEE
Q 002552 624 SITIDDVVYVV--DCGKAKE-TSYDALNKLACLLPSWISKASAHQRRGRAGRV-QPGVCYK 680 (908)
Q Consensus 624 GidIp~v~~VI--d~g~~k~-~~yd~~~~~~~l~~~~iS~~~~~QR~GRaGR~-~~G~~~~ 680 (908)
|+|+|+|++|+ |.|..-. ..|.+... .-..+.|++|||||. .+|.++.
T Consensus 325 G~d~~~v~lV~vl~aD~~l~~pd~ra~E~---------~~~ll~q~~GRagR~~~~g~vii 376 (505)
T TIGR00595 325 GHHFPNVTLVGVLDADSGLHSPDFRAAER---------GFQLLTQVAGRAGRAEDPGQVII 376 (505)
T ss_pred CCCCCcccEEEEEcCcccccCcccchHHH---------HHHHHHHHHhccCCCCCCCEEEE
Confidence 99999999884 7664321 11222111 234789999999997 7798873
No 101
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.87 E-value=4.4e-21 Score=198.34 Aligned_cols=304 Identities=16% Similarity=0.176 Sum_probs=202.8
Q ss_pred hHHHHHHHHHHHhCCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCCEEe
Q 002552 284 FKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLGETVG 363 (908)
Q Consensus 284 ~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~~~~~~~g~~vg 363 (908)
.|.|.+.|.+...+.+++++.|||.||++++.+|.+-. .+..||+.|...|....--.+.+ +|......-.
T Consensus 96 rplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~a--------dg~alvi~plislmedqil~lkq-lgi~as~lna 166 (695)
T KOG0353|consen 96 RPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCA--------DGFALVICPLISLMEDQILQLKQ-LGIDASMLNA 166 (695)
T ss_pred ChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhc--------CCceEeechhHHHHHHHHHHHHH-hCcchhhccC
Confidence 36899999999999999999999999999998887653 34678888998887765444433 3322111000
Q ss_pred EE-----eeccc---cCCCCCcEEEEchHHHH------HHHhcCCCCCcceEEEEechhcc-----chhhHH-HHHHHHH
Q 002552 364 YQ-----IRLES---KRSAQTRLLFCTTGVLL------RQLVEDPDLSCVSHLLVDEIHER-----GMNEDF-LLIILRD 423 (908)
Q Consensus 364 ~~-----~~~~~---~~~~~~~Iiv~T~g~Ll------~~l~~~~~l~~~~~iIiDEaHeR-----~~~~d~-ll~~lk~ 423 (908)
.. -+.+. ......+++|.||+.+. +.|...-....+..|-|||+|.- +...|+ .+.++|
T Consensus 167 nsske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~iaidevhccsqwghdfr~dy~~l~ilk- 245 (695)
T KOG0353|consen 167 NSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAIDEVHCCSQWGHDFRPDYKALGILK- 245 (695)
T ss_pred cccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEeecceeehhhhCcccCcchHHHHHHH-
Confidence 00 01111 11235689999999654 33433335567899999999962 233333 233444
Q ss_pred HCccCCCCcEEEecccCChHHHH---hhhCCCCccccC-CccccceeeehhhHHHhhhcccCcccccccccccccccccc
Q 002552 424 LLPRRPDLRLILMSATINADLFS---KYFGNAPTVHIP-GLTFPVTDLFLEDVLEKTRYKMNSKLDSFQGNSRRSRRQDS 499 (908)
Q Consensus 424 ~~~~~~~~qiIlmSAT~~~~~~~---~~f~~~~~i~v~-~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (908)
+..+...+|+++||.....+. +.+.-...+... +...| ..+| .. .+ +...
T Consensus 246 --rqf~~~~iigltatatn~vl~d~k~il~ie~~~tf~a~fnr~-nl~y----------ev-------~q------kp~n 299 (695)
T KOG0353|consen 246 --RQFKGAPIIGLTATATNHVLDDAKDILCIEAAFTFRAGFNRP-NLKY----------EV-------RQ------KPGN 299 (695)
T ss_pred --HhCCCCceeeeehhhhcchhhHHHHHHhHHhhheeecccCCC-Ccee----------Ee-------ee------CCCC
Confidence 467788999999997443322 111100000000 00000 0000 00 00 0000
Q ss_pred hhhhHhhhhhcccccccccchhhhhHhhHhhhhhhhhchHHHHHHHHHHHhccCCCcEEEecCCHHHHHHHHHHHHhccc
Q 002552 500 KKDHLTALFEDVDIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICRHEGDGAILVFLTGWNDISKLLDQIKVNKF 579 (908)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~ 579 (908)
. .+.+.++...|.....+..-||||-++++++.++..|..
T Consensus 300 ~-------------------------------------dd~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn--- 339 (695)
T KOG0353|consen 300 E-------------------------------------DDCIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKN--- 339 (695)
T ss_pred h-------------------------------------HHHHHHHHHHhccccCCCcceEEEeccccHHHHHHHHHh---
Confidence 0 012334444444444556779999999999999999998
Q ss_pred CCCCCceEEEeccCCCChHhHHhhhCCCCCCCcEEEEeccccccccCCCCeEEEEeCCCccceeeccccCcccccccccc
Q 002552 580 LGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETSYDALNKLACLLPSWIS 659 (908)
Q Consensus 580 ~~~~~~~~v~~lH~~l~~~er~~v~~~f~~g~~kIlvaT~iae~GidIp~v~~VId~g~~k~~~yd~~~~~~~l~~~~iS 659 (908)
.++....+|+.|.++++.-+-+.+-.|++.|||||-...+|||-|+|++||+-.+|| |
T Consensus 340 ----~gi~a~~yha~lep~dks~~hq~w~a~eiqvivatvafgmgidkpdvrfvihhsl~k------------------s 397 (695)
T KOG0353|consen 340 ----HGIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVAFGMGIDKPDVRFVIHHSLPK------------------S 397 (695)
T ss_pred ----cCccccccccccCccccccccccccccceEEEEEEeeecccCCCCCeeEEEecccch------------------h
Confidence 456677799999999999999999999999999999999999999999999999999 6
Q ss_pred HhhHHH-------------------------------------------hccccCCC-CCcEEEEecChh
Q 002552 660 KASAHQ-------------------------------------------RRGRAGRV-QPGVCYKLYPRI 685 (908)
Q Consensus 660 ~~~~~Q-------------------------------------------R~GRaGR~-~~G~~~~l~~~~ 685 (908)
.++|.| -.|||||. .+..|+..|.-.
T Consensus 398 ienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~~~a~cilyy~~~ 467 (695)
T KOG0353|consen 398 IENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDDMKADCILYYGFA 467 (695)
T ss_pred HHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCCCcccEEEEechH
Confidence 668888 78999999 788898888643
No 102
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.87 E-value=1e-20 Score=229.30 Aligned_cols=371 Identities=14% Similarity=0.135 Sum_probs=204.6
Q ss_pred CCchHHHHHHHHHHHhC--CeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCC
Q 002552 281 LPAFKMKAEFLKAVAEN--QVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENL 358 (908)
Q Consensus 281 lpi~~~Q~~~i~~i~~~--~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~~~~~~~ 358 (908)
.-+.|+|.++...+... ..+++.-+.|-|||.++.+++.+... .+...++||++|. .|..|+..++.+.++...
T Consensus 151 ~~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~---~g~~~rvLIVvP~-sL~~QW~~El~~kF~l~~ 226 (956)
T PRK04914 151 ASLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLL---TGRAERVLILVPE-TLQHQWLVEMLRRFNLRF 226 (956)
T ss_pred CCCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHH---cCCCCcEEEEcCH-HHHHHHHHHHHHHhCCCe
Confidence 45678999998776543 36899999999999888777665543 2334579999997 788999888876665432
Q ss_pred CCEEeEE----eecc-ccCCCCCcEEEEchHHHHHH--HhcCCCCCcceEEEEechhccch----hhHHHHHHHHHHCcc
Q 002552 359 GETVGYQ----IRLE-SKRSAQTRLLFCTTGVLLRQ--LVEDPDLSCVSHLLVDEIHERGM----NEDFLLIILRDLLPR 427 (908)
Q Consensus 359 g~~vg~~----~~~~-~~~~~~~~Iiv~T~g~Ll~~--l~~~~~l~~~~~iIiDEaHeR~~----~~d~ll~~lk~~~~~ 427 (908)
.. +... ...+ .......+++|+|.+.|.+. ......-..+++|||||||+-.. .+.. ...++.+...
T Consensus 227 ~i-~~~~~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~-y~~v~~La~~ 304 (956)
T PRK04914 227 SL-FDEERYAEAQHDADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSRE-YQVVEQLAEV 304 (956)
T ss_pred EE-EcCcchhhhcccccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHH-HHHHHHHhhc
Confidence 11 1000 0000 01112468999999887641 11111124789999999996211 1111 2233333222
Q ss_pred CCCCcEEEecccCChHHHHhhhCCCCccccCCccccceeeehhhH---------HHh--------------h-hcccCcc
Q 002552 428 RPDLRLILMSATINADLFSKYFGNAPTVHIPGLTFPVTDLFLEDV---------LEK--------------T-RYKMNSK 483 (908)
Q Consensus 428 ~~~~qiIlmSAT~~~~~~~~~f~~~~~i~v~~~~~~v~~~~l~~~---------~~~--------------~-~~~~~~~ 483 (908)
...++++|||+......++|.-...+ -|++..... .|.+.. +.. . .+-....
T Consensus 305 --~~~~LLLTATP~q~~~~e~falL~lL-dP~~f~~~~-~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ll~~~~ 380 (956)
T PRK04914 305 --IPGVLLLTATPEQLGQESHFARLRLL-DPDRFHDYE-AFVEEQQQYRPVADAVQALLAGEKLSDDALNALGELLGEQD 380 (956)
T ss_pred --cCCEEEEEcCcccCCcHHHHHhhhhh-CCCcCCCHH-HHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHHHhcccc
Confidence 24789999998433222222111100 111111110 111000 000 0 0000000
Q ss_pred cccccccccc--cccccchhhhHhhhhhc---------------------------ccccccccchhh-hhHhh----H-
Q 002552 484 LDSFQGNSRR--SRRQDSKKDHLTALFED---------------------------VDIDSNYKNYRA-STRAS----L- 528 (908)
Q Consensus 484 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~-~~~~~----~- 528 (908)
.+........ ..........+..+... ......|..... ..... +
T Consensus 381 ~~~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~fp~R~~~~~~l~~~~~y~~~~~~~~~~~~~~~l~ 460 (956)
T PRK04914 381 IEPLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKGFPKRELHPIPLPLPEQYQTAIKVSLEARARDMLY 460 (956)
T ss_pred hhHHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcCCCcCceeEeecCCCHHHHHHHHHhHHHHHHhhcC
Confidence 0000000000 00000000001111000 000111100000 00000 0
Q ss_pred -----hhh--hhhhhchHHHHHHHHHHHhccCCCcEEEecCCHHHHHHHHHHHHhcccCCCCCceEEEeccCCCChHhHH
Q 002552 529 -----EAW--SAEQIDLGLVESTIEYICRHEGDGAILVFLTGWNDISKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQR 601 (908)
Q Consensus 529 -----~~~--~~~~~~~~li~~~l~~i~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lH~~l~~~er~ 601 (908)
..+ .......+-....+..+++.....++||||.++..+..+++.|... .++.+..+||+|++.+|+
T Consensus 461 pe~~~~~~~~~~~~~~~d~Ki~~L~~~L~~~~~~KvLVF~~~~~t~~~L~~~L~~~------~Gi~~~~ihG~~s~~eR~ 534 (956)
T PRK04914 461 PEQIYQEFEDNATWWNFDPRVEWLIDFLKSHRSEKVLVICAKAATALQLEQALRER------EGIRAAVFHEGMSIIERD 534 (956)
T ss_pred HHHHHHHHhhhhhccccCHHHHHHHHHHHhcCCCeEEEEeCcHHHHHHHHHHHhhc------cCeeEEEEECCCCHHHHH
Confidence 000 0001111222333444555555779999999999999999999642 478899999999999999
Q ss_pred hhhCCCCCC--CcEEEEeccccccccCCCCeEEEEeCCCccceeeccccCccccccccccHhhHHHhccccCCC-CCc--
Q 002552 602 EIFDRPPPN--KRKIVLATNIAESSITIDDVVYVVDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRV-QPG-- 676 (908)
Q Consensus 602 ~v~~~f~~g--~~kIlvaT~iae~GidIp~v~~VId~g~~k~~~yd~~~~~~~l~~~~iS~~~~~QR~GRaGR~-~~G-- 676 (908)
++++.|+++ ..+|||||+++++|+|++.+++||+||+|. +.+.|.||+||+||. +.|
T Consensus 535 ~~~~~F~~~~~~~~VLIsTdvgseGlNlq~a~~VInfDlP~------------------nP~~~eQRIGR~~RiGQ~~~V 596 (956)
T PRK04914 535 RAAAYFADEEDGAQVLLCSEIGSEGRNFQFASHLVLFDLPF------------------NPDLLEQRIGRLDRIGQKHDI 596 (956)
T ss_pred HHHHHHhcCCCCccEEEechhhccCCCcccccEEEEecCCC------------------CHHHHHHHhcccccCCCCceE
Confidence 999999874 699999999999999999999999999999 556999999999998 333
Q ss_pred EEEEecChh
Q 002552 677 VCYKLYPRI 685 (908)
Q Consensus 677 ~~~~l~~~~ 685 (908)
.+|.++.+.
T Consensus 597 ~i~~~~~~~ 605 (956)
T PRK04914 597 QIHVPYLEG 605 (956)
T ss_pred EEEEccCCC
Confidence 456666553
No 103
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.86 E-value=1.9e-20 Score=222.91 Aligned_cols=306 Identities=18% Similarity=0.221 Sum_probs=222.9
Q ss_pred HHHHhhcCCCchHHHHHHHHHHHh----CC--eEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHH
Q 002552 273 AMLSFREKLPAFKMKAEFLKAVAE----NQ--VLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISV 346 (908)
Q Consensus 273 ~~~~~r~~lpi~~~Q~~~i~~i~~----~~--~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi 346 (908)
+.....-+.--++-|..+|+.+.+ ++ |=+|||.-|-|||-++.-.+...... +..|.|++||-.||.|-
T Consensus 585 ~~F~~~FPyeET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~-----GKQVAvLVPTTlLA~QH 659 (1139)
T COG1197 585 EEFEASFPYEETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMD-----GKQVAVLVPTTLLAQQH 659 (1139)
T ss_pred HHHHhcCCCcCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcC-----CCeEEEEcccHHhHHHH
Confidence 333334444456788888888865 33 56899999999998887777665532 45788999999999999
Q ss_pred HHHHHHHhCCCCCCEEeEEeecccc----------CCCCCcEEEEchHHHHHHHhcCCCCCcceEEEEechhccchhhHH
Q 002552 347 AARVSSERGENLGETVGYQIRLESK----------RSAQTRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDF 416 (908)
Q Consensus 347 ~~rv~~~~~~~~g~~vg~~~~~~~~----------~~~~~~Iiv~T~g~Ll~~l~~~~~l~~~~~iIiDEaHeR~~~~d~ 416 (908)
++.+++.+. .....|+.--|+... .....+|+|+|. ++|..+-.++++++|||||=|.-|+..
T Consensus 660 y~tFkeRF~-~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTH----rLL~kdv~FkdLGLlIIDEEqRFGVk~-- 732 (1139)
T COG1197 660 YETFKERFA-GFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTH----RLLSKDVKFKDLGLLIIDEEQRFGVKH-- 732 (1139)
T ss_pred HHHHHHHhc-CCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEech----HhhCCCcEEecCCeEEEechhhcCccH--
Confidence 999977653 344555554444322 234789999997 455556688999999999999656554
Q ss_pred HHHHHHHHCccCCCCcEEEecccC-ChHHHHhhhC--CCCcccc-CCccccceeeehhhHHHhhhcccCccccccccccc
Q 002552 417 LLIILRDLLPRRPDLRLILMSATI-NADLFSKYFG--NAPTVHI-PGLTFPVTDLFLEDVLEKTRYKMNSKLDSFQGNSR 492 (908)
Q Consensus 417 ll~~lk~~~~~~~~~qiIlmSAT~-~~~~~~~~f~--~~~~i~v-~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 492 (908)
...+...+.++.++-||||+ |..+-....| +-.+|.. |...+||..+..+.
T Consensus 733 ----KEkLK~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~~R~pV~T~V~~~--------------------- 787 (1139)
T COG1197 733 ----KEKLKELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPEDRLPVKTFVSEY--------------------- 787 (1139)
T ss_pred ----HHHHHHHhccCcEEEeeCCCCcchHHHHHhcchhhhhccCCCCCCcceEEEEecC---------------------
Confidence 22333456789999999997 5444333333 2334433 45567777665421
Q ss_pred ccccccchhhhHhhhhhcccccccccchhhhhHhhHhhhhhhhhchHHHHH-HHHHHHhccCCCcEEEecCCHHHHHHHH
Q 002552 493 RSRRQDSKKDHLTALFEDVDIDSNYKNYRASTRASLEAWSAEQIDLGLVES-TIEYICRHEGDGAILVFLTGWNDISKLL 571 (908)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~-~l~~i~~~~~~g~iLVF~~~~~~i~~l~ 571 (908)
|..++.+ ++..+ ..+|++-.-.|..++|+.++
T Consensus 788 --------------------------------------------d~~~ireAI~REl---~RgGQvfYv~NrV~~Ie~~~ 820 (1139)
T COG1197 788 --------------------------------------------DDLLIREAILREL---LRGGQVFYVHNRVESIEKKA 820 (1139)
T ss_pred --------------------------------------------ChHHHHHHHHHHH---hcCCEEEEEecchhhHHHHH
Confidence 1112323 33333 35789988899999999999
Q ss_pred HHHHhcccCCCCCceEEEeccCCCChHhHHhhhCCCCCCCcEEEEeccccccccCCCCeEEEEeCCCccceeeccccCcc
Q 002552 572 DQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETSYDALNKLA 651 (908)
Q Consensus 572 ~~L~~~~~~~~~~~~~v~~lH~~l~~~er~~v~~~f~~g~~kIlvaT~iae~GidIp~v~~VId~g~~k~~~yd~~~~~~ 651 (908)
+.|++.- +...|...||.|+..+-+.++..|-+|...|||||.|.|+|||||+++.+|--.--+
T Consensus 821 ~~L~~LV-----PEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiIIe~AD~----------- 884 (1139)
T COG1197 821 ERLRELV-----PEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTIIIERADK----------- 884 (1139)
T ss_pred HHHHHhC-----CceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEEEecccc-----------
Confidence 9998732 567899999999999999999999999999999999999999999999888422111
Q ss_pred ccccccccHhhHHHhccccCCC-CCcEEEEecCh
Q 002552 652 CLLPSWISKASAHQRRGRAGRV-QPGVCYKLYPR 684 (908)
Q Consensus 652 ~l~~~~iS~~~~~QR~GRaGR~-~~G~~~~l~~~ 684 (908)
.--++..|-+||.||. ..+.||.||..
T Consensus 885 ------fGLsQLyQLRGRVGRS~~~AYAYfl~p~ 912 (1139)
T COG1197 885 ------FGLAQLYQLRGRVGRSNKQAYAYFLYPP 912 (1139)
T ss_pred ------ccHHHHHHhccccCCccceEEEEEeecC
Confidence 1445889999999999 77999999985
No 104
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.83 E-value=2.2e-18 Score=203.35 Aligned_cols=126 Identities=17% Similarity=0.148 Sum_probs=90.6
Q ss_pred hcCCCchHHHHHHHHHHHhCCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCC
Q 002552 278 REKLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGEN 357 (908)
Q Consensus 278 r~~lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~~~~~~ 357 (908)
++.|-+.+|--+++-.+.=++--|..++||+|||+++.++++..++. + ..++|+.|+++||.|.++.+...+ ..
T Consensus 76 ~R~lg~~~ydvQliGg~~Lh~G~Iaem~TGeGKTL~a~Lpa~~~al~---G--~~V~VvTpn~yLA~qd~e~m~~l~-~~ 149 (896)
T PRK13104 76 LRTLGLRHFDVQLIGGMVLHEGNIAEMRTGEGKTLVATLPAYLNAIS---G--RGVHIVTVNDYLAKRDSQWMKPIY-EF 149 (896)
T ss_pred HHHcCCCcchHHHhhhhhhccCccccccCCCCchHHHHHHHHHHHhc---C--CCEEEEcCCHHHHHHHHHHHHHHh-cc
Confidence 34444444444455444333334899999999999999999977653 2 247888999999999998886654 44
Q ss_pred CCCEEeEEeecccc----CCCCCcEEEEchHHH-HHHHhcCC--CC-----CcceEEEEechhc
Q 002552 358 LGETVGYQIRLESK----RSAQTRLLFCTTGVL-LRQLVEDP--DL-----SCVSHLLVDEIHE 409 (908)
Q Consensus 358 ~g~~vg~~~~~~~~----~~~~~~Iiv~T~g~L-l~~l~~~~--~l-----~~~~~iIiDEaHe 409 (908)
+|..||........ ..-.++|+|+|||.| .++|..+. .+ ..+.++||||||.
T Consensus 150 lGLtv~~i~gg~~~~~r~~~y~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDs 213 (896)
T PRK13104 150 LGLTVGVIYPDMSHKEKQEAYKADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDS 213 (896)
T ss_pred cCceEEEEeCCCCHHHHHHHhCCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhh
Confidence 67788776543221 122689999999999 88887663 23 5899999999994
No 105
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.81 E-value=1.5e-18 Score=204.05 Aligned_cols=107 Identities=20% Similarity=0.210 Sum_probs=95.9
Q ss_pred cCCCcEEEecCCHHHHHHHHHHHHhcccCCCCCceEEEeccCCCChHhHHhhhCCCCCCCcEEEEeccccccccCC---C
Q 002552 552 EGDGAILVFLTGWNDISKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITI---D 628 (908)
Q Consensus 552 ~~~g~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lH~~l~~~er~~v~~~f~~g~~kIlvaT~iae~GidI---p 628 (908)
..+.++||||++...++.++..|.+ .++....+|+.+...|+..+...+++|. |+||||+|+||+|| +
T Consensus 438 ~~g~pvLI~t~si~~se~ls~~L~~-------~gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~ 508 (796)
T PRK12906 438 AKGQPVLVGTVAIESSERLSHLLDE-------AGIPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGP 508 (796)
T ss_pred hCCCCEEEEeCcHHHHHHHHHHHHH-------CCCCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCc
Confidence 3567899999999999999999998 4556778999999999999988888887 99999999999999 4
Q ss_pred CeE-----EEEeCCCccceeeccccCccccccccccHhhHHHhccccCCC-CCcEEEEecChh
Q 002552 629 DVV-----YVVDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRV-QPGVCYKLYPRI 685 (908)
Q Consensus 629 ~v~-----~VId~g~~k~~~yd~~~~~~~l~~~~iS~~~~~QR~GRaGR~-~~G~~~~l~~~~ 685 (908)
+|. +||++.+|. |...+.||+|||||. .||.+..+++-+
T Consensus 509 ~V~~~GGLhVI~te~pe------------------s~ri~~Ql~GRtGRqG~~G~s~~~~sle 553 (796)
T PRK12906 509 GVKELGGLAVIGTERHE------------------SRRIDNQLRGRSGRQGDPGSSRFYLSLE 553 (796)
T ss_pred chhhhCCcEEEeeecCC------------------cHHHHHHHhhhhccCCCCcceEEEEecc
Confidence 899 999999998 666999999999999 789998888765
No 106
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.80 E-value=1.1e-18 Score=179.95 Aligned_cols=163 Identities=22% Similarity=0.170 Sum_probs=120.1
Q ss_pred cCCCchHHHHHHHHHHHhCCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCC
Q 002552 279 EKLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENL 358 (908)
Q Consensus 279 ~~lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~~~~~~~ 358 (908)
....++++|.++++.+.+++++++++|||+|||..+.+++++.+.......+++++|++|+++|+.|+++.+...... .
T Consensus 18 ~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L~~q~~~~~~~~~~~-~ 96 (203)
T cd00268 18 GFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQIAEVARKLGKH-T 96 (203)
T ss_pred CCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHHHHHHHHHHHHHhcc-C
Confidence 334578999999999999999999999999999999999998876542234678999999999999999888665432 2
Q ss_pred CCEEeEEeecc------ccCCCCCcEEEEchHHHHHHHhcCC-CCCcceEEEEechhccchhhHHHHHHHHHHCccCCCC
Q 002552 359 GETVGYQIRLE------SKRSAQTRLLFCTTGVLLRQLVEDP-DLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDL 431 (908)
Q Consensus 359 g~~vg~~~~~~------~~~~~~~~Iiv~T~g~Ll~~l~~~~-~l~~~~~iIiDEaHeR~~~~d~ll~~lk~~~~~~~~~ 431 (908)
+..+....... .....+++|+|+||+.|++.+.+.. .+.++++||+||+|+. .+.++...+...+....++.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~-~~~~~~~~~~~~~~~l~~~~ 175 (203)
T cd00268 97 NLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRM-LDMGFEDQIREILKLLPKDR 175 (203)
T ss_pred CceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHh-hccChHHHHHHHHHhCCccc
Confidence 33332221111 1112378999999999999988766 7899999999999953 23333333322222344579
Q ss_pred cEEEecccCChH
Q 002552 432 RLILMSATINAD 443 (908)
Q Consensus 432 qiIlmSAT~~~~ 443 (908)
++++||||++..
T Consensus 176 ~~~~~SAT~~~~ 187 (203)
T cd00268 176 QTLLFSATMPKE 187 (203)
T ss_pred EEEEEeccCCHH
Confidence 999999999754
No 107
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.79 E-value=4.7e-18 Score=200.63 Aligned_cols=123 Identities=18% Similarity=0.134 Sum_probs=89.3
Q ss_pred cCCCchHHHHHHHHHHHhCCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCC
Q 002552 279 EKLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENL 358 (908)
Q Consensus 279 ~~lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~~~~~~~ 358 (908)
-.+.+|..|--..-++.+|+ |..++||+|||+++.++++-..+. +. .|-|+.|++.||.|.++.+...+ ..+
T Consensus 78 lg~~~~dvQlig~l~L~~G~--Iaem~TGeGKTLva~lpa~l~aL~---G~--~V~IvTpn~yLA~rd~e~~~~l~-~~L 149 (830)
T PRK12904 78 LGMRHFDVQLIGGMVLHEGK--IAEMKTGEGKTLVATLPAYLNALT---GK--GVHVVTVNDYLAKRDAEWMGPLY-EFL 149 (830)
T ss_pred hCCCCCccHHHhhHHhcCCc--hhhhhcCCCcHHHHHHHHHHHHHc---CC--CEEEEecCHHHHHHHHHHHHHHH-hhc
Confidence 34566667765555566665 899999999999999888644432 22 35577899999999999886654 456
Q ss_pred CCEEeEEeecccc----CCCCCcEEEEchHHH-HHHHhcCC-------CCCcceEEEEechhc
Q 002552 359 GETVGYQIRLESK----RSAQTRLLFCTTGVL-LRQLVEDP-------DLSCVSHLLVDEIHE 409 (908)
Q Consensus 359 g~~vg~~~~~~~~----~~~~~~Iiv~T~g~L-l~~l~~~~-------~l~~~~~iIiDEaHe 409 (908)
|..||..+...+. ..-.++|+|+|++.| .++|.... .+..+.++||||||.
T Consensus 150 Glsv~~i~~~~~~~er~~~y~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDs 212 (830)
T PRK12904 150 GLSVGVILSGMSPEERREAYAADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDS 212 (830)
T ss_pred CCeEEEEcCCCCHHHHHHhcCCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhh
Confidence 7777766543211 112589999999999 88886543 367899999999994
No 108
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.79 E-value=3e-18 Score=171.18 Aligned_cols=156 Identities=24% Similarity=0.267 Sum_probs=114.9
Q ss_pred hHHHHHHHHHHHhCCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCCEEe
Q 002552 284 FKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLGETVG 363 (908)
Q Consensus 284 ~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~~~~~~~g~~vg 363 (908)
+++|.++++.+.++++++++||||||||+++..+++..+... ...++++++|+++|+.|+++++....... +..+.
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~---~~~~~lii~P~~~l~~q~~~~~~~~~~~~-~~~~~ 76 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEG---KDARVLIIVPTRALAEQQFERLRKFFSNT-NVRVV 76 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTT---SSSEEEEEESSHHHHHHHHHHHHHHTTTT-TSSEE
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccC---CCceEEEEeeccccccccccccccccccc-ccccc
Confidence 478999999999999999999999999999999999877543 23489999999999999999998876652 22222
Q ss_pred EEeecc-------ccCCCCCcEEEEchHHHHHHHhcCC-CCCcceEEEEechhccchh--hHHHHHHHHHHCccCCCCcE
Q 002552 364 YQIRLE-------SKRSAQTRLLFCTTGVLLRQLVEDP-DLSCVSHLLVDEIHERGMN--EDFLLIILRDLLPRRPDLRL 433 (908)
Q Consensus 364 ~~~~~~-------~~~~~~~~Iiv~T~g~Ll~~l~~~~-~l~~~~~iIiDEaHeR~~~--~d~ll~~lk~~~~~~~~~qi 433 (908)
...... .....+++|+|+||++|++.+.... .+.++++|||||+|+.... .+.+..+++. ....++.++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~-~~~~~~~~~ 155 (169)
T PF00270_consen 77 LLHGGQSISEDQREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSILRR-LKRFKNIQI 155 (169)
T ss_dssp EESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHHHHH-SHTTTTSEE
T ss_pred cccccccccccccccccccccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHHHHHH-hcCCCCCcE
Confidence 221111 1112469999999999999998754 6677999999999964331 2223333333 223346899
Q ss_pred EEecccCChHHH
Q 002552 434 ILMSATINADLF 445 (908)
Q Consensus 434 IlmSAT~~~~~~ 445 (908)
|+||||++ ..+
T Consensus 156 i~~SAT~~-~~~ 166 (169)
T PF00270_consen 156 ILLSATLP-SNV 166 (169)
T ss_dssp EEEESSST-HHH
T ss_pred EEEeeCCC-hhH
Confidence 99999998 443
No 109
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.77 E-value=9e-18 Score=192.35 Aligned_cols=163 Identities=25% Similarity=0.298 Sum_probs=116.6
Q ss_pred CCchHHHHHHHHHHHhCCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCC-C-
Q 002552 281 LPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGEN-L- 358 (908)
Q Consensus 281 lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~~~~~~-~- 358 (908)
+.+...|.+.+..+..+..++|+|||.+|||+.- .+..+..+... ....||++.|+++|+.|++..+...+... .
T Consensus 510 F~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfis-fY~iEKVLRes--D~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~~ 586 (1330)
T KOG0949|consen 510 FCPDEWQRELLDSVDRNESAVIVAPTSAGKTFIS-FYAIEKVLRES--DSDVVIYVAPTKALVNQVSANVYARFDTKTFL 586 (1330)
T ss_pred cCCcHHHHHHhhhhhcccceEEEeeccCCceecc-HHHHHHHHhhc--CCCEEEEecchHHHhhhhhHHHHHhhccCccc
Confidence 6677899999999999999999999999999754 45556655432 24578999999999999998876665322 1
Q ss_pred -CCEE-eEEeeccccCCCCCcEEEEchHHHHHHHhcCC----CCCcceEEEEechhccchhhH-HHHHHHHHHCccCCCC
Q 002552 359 -GETV-GYQIRLESKRSAQTRLLFCTTGVLLRQLVEDP----DLSCVSHLLVDEIHERGMNED-FLLIILRDLLPRRPDL 431 (908)
Q Consensus 359 -g~~v-g~~~~~~~~~~~~~~Iiv~T~g~Ll~~l~~~~----~l~~~~~iIiDEaHeR~~~~d-~ll~~lk~~~~~~~~~ 431 (908)
|.++ |--.+..+...-+|+|+|+-|++|-.+|.+.| +..++++||+||||.-|-..| .+...+-.+ -.+
T Consensus 587 rg~sl~g~ltqEYsinp~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~l----i~C 662 (1330)
T KOG0949|consen 587 RGVSLLGDLTQEYSINPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLL----IPC 662 (1330)
T ss_pred cchhhHhhhhHHhcCCchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHHh----cCC
Confidence 2222 11112112222379999999999999888743 889999999999996543322 222222222 235
Q ss_pred cEEEecccC-ChHHHHhhhC
Q 002552 432 RLILMSATI-NADLFSKYFG 450 (908)
Q Consensus 432 qiIlmSAT~-~~~~~~~~f~ 450 (908)
-+|++|||+ |+..|..|+.
T Consensus 663 P~L~LSATigN~~l~qkWln 682 (1330)
T KOG0949|consen 663 PFLVLSATIGNPNLFQKWLN 682 (1330)
T ss_pred CeeEEecccCCHHHHHHHHH
Confidence 699999999 7888999986
No 110
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.76 E-value=2.2e-17 Score=200.01 Aligned_cols=314 Identities=21% Similarity=0.205 Sum_probs=185.5
Q ss_pred CchHHHHHHHHHHHh---CC-eEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCC
Q 002552 282 PAFKMKAEFLKAVAE---NQ-VLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGEN 357 (908)
Q Consensus 282 pi~~~Q~~~i~~i~~---~~-~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~~~~~~ 357 (908)
+.++.|..+++.+.. .. .+++.||||+|||++...+.+...... .....+++++.|+|.++.++++++....+..
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~-~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~ 273 (733)
T COG1203 195 EGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEK-IKLKSRVIYVLPFRTIIEDMYRRAKEIFGLF 273 (733)
T ss_pred hhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhcc-ccccceEEEEccHHHHHHHHHHHHHhhhccc
Confidence 345678888887764 34 889999999999998888777655432 2246799999999999999999998754432
Q ss_pred --CCC-EEeEEee----cc-----------c-cCCCCCcEEEEchHHHHHHHhcCCCC-----CcceEEEEechhccchh
Q 002552 358 --LGE-TVGYQIR----LE-----------S-KRSAQTRLLFCTTGVLLRQLVEDPDL-----SCVSHLLVDEIHERGMN 413 (908)
Q Consensus 358 --~g~-~vg~~~~----~~-----------~-~~~~~~~Iiv~T~g~Ll~~l~~~~~l-----~~~~~iIiDEaHeR~~~ 413 (908)
.+. .-+.... .. + ....-..+.++|+-..+......... --.+++|+||+|-..-+
T Consensus 274 ~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~~~~ 353 (733)
T COG1203 274 SVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLYADE 353 (733)
T ss_pred ccccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHhhccc
Confidence 111 1111100 00 0 00011233344443333221111111 23589999999953333
Q ss_pred --hHHHHHHHHHHCccCCCCcEEEecccCChHH---HHhhhCCCCccccCCccccceeeehhhHHHhhhcccCccccccc
Q 002552 414 --EDFLLIILRDLLPRRPDLRLILMSATINADL---FSKYFGNAPTVHIPGLTFPVTDLFLEDVLEKTRYKMNSKLDSFQ 488 (908)
Q Consensus 414 --~d~ll~~lk~~~~~~~~~qiIlmSAT~~~~~---~~~~f~~~~~i~v~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~ 488 (908)
..+++.++..+ ..-+..+|+||||++... +.++++....+.......+....+.-
T Consensus 354 ~~~~~l~~~i~~l--~~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~------------------ 413 (733)
T COG1203 354 TMLAALLALLEAL--AEAGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGL------------------ 413 (733)
T ss_pred chHHHHHHHHHHH--HhCCCCEEEEecCCCHHHHHHHHHHHhcccceecccccccccccccc------------------
Confidence 23333443333 233689999999998753 44444432221111000000000000
Q ss_pred ccccccccccchhhhHhhhhhcccccccccchhhhhHhhHhhhhhhhhchHHHHHHHHH-HHhccCCCcEEEecCCHHHH
Q 002552 489 GNSRRSRRQDSKKDHLTALFEDVDIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEY-ICRHEGDGAILVFLTGWNDI 567 (908)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~-i~~~~~~g~iLVF~~~~~~i 567 (908)
.+ .....+. +.. ....... ......++++||-++|...+
T Consensus 414 ---~~-----~~~~~~~-------------------------------~~~-~~~~~~~~~~~~~~~~kvlvI~NTV~~A 453 (733)
T COG1203 414 ---KR-----KERVDVE-------------------------------DGP-QEELIELISEEVKEGKKVLVIVNTVDRA 453 (733)
T ss_pred ---cc-----ccchhhh-------------------------------hhh-hHhhhhcchhhhccCCcEEEEEecHHHH
Confidence 00 0000000 000 0000111 11124567999999999999
Q ss_pred HHHHHHHHhcccCCCCCceEEEeccCCCChHhHHhhhCC----CCCCCcEEEEeccccccccCCCCeEEEEeCCCcccee
Q 002552 568 SKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDR----PPPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETS 643 (908)
Q Consensus 568 ~~l~~~L~~~~~~~~~~~~~v~~lH~~l~~~er~~v~~~----f~~g~~kIlvaT~iae~GidIp~v~~VId~g~~k~~~ 643 (908)
.++++.|+... ..+..+||.+...+|.+.++. |..+.-.|+|||.|.|.||||. .+++|=
T Consensus 454 ie~Y~~Lk~~~-------~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDid-fd~mIT-------- 517 (733)
T COG1203 454 IELYEKLKEKG-------PKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDID-FDVLIT-------- 517 (733)
T ss_pred HHHHHHHHhcC-------CCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEeccc-cCeeee--------
Confidence 99999999732 268999999999999877653 3457889999999999999996 777762
Q ss_pred eccccCccccccccccHhhHHHhccccCCCC---CcEEEEecCh
Q 002552 644 YDALNKLACLLPSWISKASAHQRRGRAGRVQ---PGVCYKLYPR 684 (908)
Q Consensus 644 yd~~~~~~~l~~~~iS~~~~~QR~GRaGR~~---~G~~~~l~~~ 684 (908)
...+..+.+||+||..|.+ +|..|..-..
T Consensus 518 ------------e~aPidSLIQR~GRv~R~g~~~~~~~~v~~~~ 549 (733)
T COG1203 518 ------------ELAPIDSLIQRAGRVNRHGKKENGKIYVYNDE 549 (733)
T ss_pred ------------cCCCHHHHHHHHHHHhhcccccCCceeEeecc
Confidence 1225559999999999995 4666655443
No 111
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.74 E-value=1.4e-16 Score=187.68 Aligned_cols=121 Identities=17% Similarity=0.157 Sum_probs=95.4
Q ss_pred chHHHHHHHHHHHhCCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCCEE
Q 002552 283 AFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLGETV 362 (908)
Q Consensus 283 i~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~~~~~~~g~~v 362 (908)
++|+|.++++.+..++++|+.++||+|||+++.++++..++.. . .++|+.|+|+||.|+++.+.... ..+|..+
T Consensus 93 ~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~g---~--~v~IVTpTrELA~Qdae~m~~L~-k~lGLsV 166 (970)
T PRK12899 93 MVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALTG---K--PVHLVTVNDYLAQRDCEWVGSVL-RWLGLTT 166 (970)
T ss_pred CChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhhc---C--CeEEEeCCHHHHHHHHHHHHHHH-hhcCCeE
Confidence 8899999999999999999999999999999999999877642 1 36777899999999998776543 3456666
Q ss_pred eEEeecccc----CCCCCcEEEEchHHH-HHHHhcCC-CCC-------cceEEEEechhc
Q 002552 363 GYQIRLESK----RSAQTRLLFCTTGVL-LRQLVEDP-DLS-------CVSHLLVDEIHE 409 (908)
Q Consensus 363 g~~~~~~~~----~~~~~~Iiv~T~g~L-l~~l~~~~-~l~-------~~~~iIiDEaHe 409 (908)
+..+...+. ..-+++|+|+|||+| +++|.... .++ .+.++||||||.
T Consensus 167 ~~i~GG~~~~eq~~~y~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr~~~~~IIDEADs 226 (970)
T PRK12899 167 GVLVSGSPLEKRKEIYQCDVVYGTASEFGFDYLRDNSIATRKEEQVGRGFYFAIIDEVDS 226 (970)
T ss_pred EEEeCCCCHHHHHHHcCCCEEEECCChhHHHHhhCCCCCcCHHHhhcccccEEEEechhh
Confidence 655432211 112589999999999 99988763 444 458999999994
No 112
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.73 E-value=4.3e-16 Score=183.53 Aligned_cols=122 Identities=17% Similarity=0.122 Sum_probs=87.5
Q ss_pred CCCchHHHHHHHHHHHhCCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCC
Q 002552 280 KLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLG 359 (908)
Q Consensus 280 ~lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~~~~~~~g 359 (908)
.+..|..|--.--++.+|+ |..++||.|||+++.++++..++. +..|.|+.|++.||.+.++.+...+. .+|
T Consensus 80 gm~~ydVQliGgl~L~~G~--IaEm~TGEGKTL~a~lp~~l~al~-----g~~VhIvT~ndyLA~RD~e~m~~l~~-~lG 151 (908)
T PRK13107 80 EMRHFDVQLLGGMVLDSNR--IAEMRTGEGKTLTATLPAYLNALT-----GKGVHVITVNDYLARRDAENNRPLFE-FLG 151 (908)
T ss_pred CCCcCchHHhcchHhcCCc--cccccCCCCchHHHHHHHHHHHhc-----CCCEEEEeCCHHHHHHHHHHHHHHHH-hcC
Confidence 3455556644433444555 899999999999999999877653 22488888999999999988766544 367
Q ss_pred CEEeEEeeccc---cCC-CCCcEEEEchHHH-HHHHhcCC-------CCCcceEEEEechhc
Q 002552 360 ETVGYQIRLES---KRS-AQTRLLFCTTGVL-LRQLVEDP-------DLSCVSHLLVDEIHE 409 (908)
Q Consensus 360 ~~vg~~~~~~~---~~~-~~~~Iiv~T~g~L-l~~l~~~~-------~l~~~~~iIiDEaHe 409 (908)
.+||....... +.. =.++|+|+||+.| .++|..+- ....+.++||||||.
T Consensus 152 lsv~~i~~~~~~~~r~~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDs 213 (908)
T PRK13107 152 LTVGINVAGLGQQEKKAAYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDS 213 (908)
T ss_pred CeEEEecCCCCHHHHHhcCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhh
Confidence 77776533221 111 2689999999999 88776652 237789999999994
No 113
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.72 E-value=1.6e-15 Score=174.01 Aligned_cols=374 Identities=17% Similarity=0.181 Sum_probs=205.6
Q ss_pred hHHHHHHHHHH----HhC-CeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCC
Q 002552 284 FKMKAEFLKAV----AEN-QVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENL 358 (908)
Q Consensus 284 ~~~Q~~~i~~i----~~~-~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~~~~~~~ 358 (908)
..||..+|..+ .+| +-+++++.||+|||..+.++|... +.. +.-.+||+++-|++|..|.+..+...+-..
T Consensus 167 RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~rL-~r~--~~~KRVLFLaDR~~Lv~QA~~af~~~~P~~- 242 (875)
T COG4096 167 RYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDRL-IKS--GWVKRVLFLADRNALVDQAYGAFEDFLPFG- 242 (875)
T ss_pred hHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHHHHH-Hhc--chhheeeEEechHHHHHHHHHHHHHhCCCc-
Confidence 45677666554 333 469999999999997666655443 332 334689999999999999988876664321
Q ss_pred CCEEeEEeeccccCCCCCcEEEEchHHHHHHHhcC-C-----CCCcceEEEEechhccchhhHHHHHHHHHHCccCCCCc
Q 002552 359 GETVGYQIRLESKRSAQTRLLFCTTGVLLRQLVED-P-----DLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLR 432 (908)
Q Consensus 359 g~~vg~~~~~~~~~~~~~~Iiv~T~g~Ll~~l~~~-~-----~l~~~~~iIiDEaHeR~~~~d~ll~~lk~~~~~~~~~q 432 (908)
..+-. +. +......++|.++|.+.+...+... . ....+++||||||| |++..+.- .++..+- .-
T Consensus 243 -~~~n~-i~-~~~~~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaH-Rgi~~~~~-~I~dYFd-----A~ 312 (875)
T COG4096 243 -TKMNK-IE-DKKGDTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAH-RGIYSEWS-SILDYFD-----AA 312 (875)
T ss_pred -cceee-ee-cccCCcceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhh-hhHHhhhH-HHHHHHH-----HH
Confidence 11111 11 1122225799999999988877654 1 34569999999999 98776643 3332221 12
Q ss_pred EEEecccCChHH---HHhhhCCCCccccCCccccceeeehhhHHHhhh---cccCcccccccccccccccccchhhhHhh
Q 002552 433 LILMSATINADL---FSKYFGNAPTVHIPGLTFPVTDLFLEDVLEKTR---YKMNSKLDSFQGNSRRSRRQDSKKDHLTA 506 (908)
Q Consensus 433 iIlmSAT~~~~~---~~~~f~~~~~i~v~~~~~~v~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (908)
+++++||+.... --.||++.| +..+-+++.+.... |........+.. ..+.....++.. ..
T Consensus 313 ~~gLTATP~~~~d~~T~~~F~g~P----------t~~YsleeAV~DGfLvpy~vi~i~~~~~~-~G~~~~~~sere--k~ 379 (875)
T COG4096 313 TQGLTATPKETIDRSTYGFFNGEP----------TYAYSLEEAVEDGFLVPYKVIRIDTDFDL-DGWKPDAGSERE--KL 379 (875)
T ss_pred HHhhccCcccccccccccccCCCc----------ceeecHHHHhhccccCCCCceEEeeeccc-cCcCcCccchhh--hh
Confidence 345599985432 224664333 22333333222111 111000000000 000000000000 00
Q ss_pred hhhcccccccccchhhhhHhhHhhhhhhhhchHHHHHHHHHHHhc--cC--CCcEEEecCCHHHHHHHHHHHHhcccCCC
Q 002552 507 LFEDVDIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICRH--EG--DGAILVFLTGWNDISKLLDQIKVNKFLGD 582 (908)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~--~~--~g~iLVF~~~~~~i~~l~~~L~~~~~~~~ 582 (908)
..+.++++.. +|....-+.... -....+.+...+.+.+.. .. .+++||||.+..+++.+.+.+......
T Consensus 380 ~g~~i~~dd~--~~~~~d~dr~~v---~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype-- 452 (875)
T COG4096 380 QGEAIDEDDQ--NFEARDFDRTLV---IPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPE-- 452 (875)
T ss_pred hccccCcccc--cccccccchhcc---ccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCcc--
Confidence 0000101000 000000000000 001123456666666654 22 579999999999999999999865332
Q ss_pred CCceEEEeccCCCChHhHHhhhCCC--CCCCcEEEEeccccccccCCCCeEEEEeCCCccceeeccccCccccccccccH
Q 002552 583 PNKFLVLPLHGSMPTINQREIFDRP--PPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETSYDALNKLACLLPSWISK 660 (908)
Q Consensus 583 ~~~~~v~~lH~~l~~~er~~v~~~f--~~g~~kIlvaT~iae~GidIp~v~~VId~g~~k~~~yd~~~~~~~l~~~~iS~ 660 (908)
..+-.+..+.++-.+.+ ..+ +.| ++..-+|.++.+.+.+|||+|.|..+|-.-..+ |+
T Consensus 453 ~~~~~a~~IT~d~~~~q-~~I-d~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r~Vr------------------Sk 512 (875)
T COG4096 453 YNGRYAMKITGDAEQAQ-ALI-DNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVR------------------SK 512 (875)
T ss_pred ccCceEEEEeccchhhH-HHH-HHHHhcCCCCceEEehhhhhcCCCchheeeeeehhhhh------------------hH
Confidence 12233445555544333 222 233 234567999999999999999999998766555 88
Q ss_pred hhHHHhccccCCCCC--c------EEEEecCh---hhHhhcCCCCCCccccCchHHHHHHHh
Q 002552 661 ASAHQRRGRAGRVQP--G------VCYKLYPR---IIHDAMLPYQLPEILRTPLQELCLHIK 711 (908)
Q Consensus 661 ~~~~QR~GRaGR~~~--G------~~~~l~~~---~~~~~l~~~~~pei~r~~L~~~~L~~~ 711 (908)
.-|+|++||.=|..+ | ..|.+|.- -.|-.|.+...+.-.+..|+.-++...
T Consensus 513 tkF~QMvGRGTRl~~~~~~~~~dK~~F~ifDf~~~~~~~~~~~~~~e~~~~~~l~~rLF~~~ 574 (875)
T COG4096 513 TKFKQMVGRGTRLCPDLGGPEQDKEFFTIFDFVDNTEYFEMDPEMREGRVRVSLEQRLFADR 574 (875)
T ss_pred HHHHHHhcCccccCccccCccccceeEEEEEhhhhhhhhccCcccccccccchHHHHHhhhh
Confidence 899999999999833 3 34555542 123345555555555556655444433
No 114
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.67 E-value=4.1e-15 Score=172.88 Aligned_cols=279 Identities=19% Similarity=0.253 Sum_probs=183.4
Q ss_pred HHHHHhhcCCCchHHHHHHHHHHHhCCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHH
Q 002552 272 KAMLSFREKLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVS 351 (908)
Q Consensus 272 ~~~~~~r~~lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~ 351 (908)
.+..+..-..++|..|......+..|+..-|+||||.||||-...+.+-.+ .+ +.+++++.||+.|+.|+++++.
T Consensus 72 ~~fF~k~~G~~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl~~a---~k--gkr~yii~PT~~Lv~Q~~~kl~ 146 (1187)
T COG1110 72 EEFFKKATGFRPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSLYLA---KK--GKRVYIIVPTTTLVRQVYERLK 146 (1187)
T ss_pred HHHHHHhhCCCchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHHHHH---hc--CCeEEEEecCHHHHHHHHHHHH
Confidence 344444555789999999999999999999999999999987665554433 22 3577788899999999999997
Q ss_pred HHhCC--CCCCEEeEEeecc---------ccCCCCCcEEEEchHHHHHHHhcCCCCCcceEEEEechhc---cchhhHHH
Q 002552 352 SERGE--NLGETVGYQIRLE---------SKRSAQTRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHE---RGMNEDFL 417 (908)
Q Consensus 352 ~~~~~--~~g~~vg~~~~~~---------~~~~~~~~Iiv~T~g~Ll~~l~~~~~l~~~~~iIiDEaHe---R~~~~d~l 417 (908)
+..-. .....+.|+-... ...+.+.+|+|+|.+.|...+..-.. -++++|++|++|- .+-+.|-+
T Consensus 147 ~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L~~-~kFdfifVDDVDA~LkaskNvDri 225 (1187)
T COG1110 147 KFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEELSK-LKFDFIFVDDVDAILKASKNVDRL 225 (1187)
T ss_pred HHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHhcc-cCCCEEEEccHHHHHhccccHHHH
Confidence 76422 2223333553321 11234789999999988776643222 3799999999993 12222222
Q ss_pred HHH----------------HHHHC----------------------ccCCCCcEEEecccCChH-----HHHhhhCCCCc
Q 002552 418 LII----------------LRDLL----------------------PRRPDLRLILMSATINAD-----LFSKYFGNAPT 454 (908)
Q Consensus 418 l~~----------------lk~~~----------------------~~~~~~qiIlmSAT~~~~-----~~~~~f~~~~~ 454 (908)
+.+ ++.-+ .+...-++|++|||..+. .|.+.++
T Consensus 226 L~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLlg---- 301 (1187)
T COG1110 226 LRLLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELLG---- 301 (1187)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHHhC----
Confidence 211 11111 122346789999998432 3555543
Q ss_pred cccCCcc---ccceeeehhhHHHhhhcccCcccccccccccccccccchhhhHhhhhhcccccccccchhhhhHhhHhhh
Q 002552 455 VHIPGLT---FPVTDLFLEDVLEKTRYKMNSKLDSFQGNSRRSRRQDSKKDHLTALFEDVDIDSNYKNYRASTRASLEAW 531 (908)
Q Consensus 455 i~v~~~~---~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 531 (908)
+.+.+.. -.+...|.++
T Consensus 302 FevG~~~~~LRNIvD~y~~~------------------------------------------------------------ 321 (1187)
T COG1110 302 FEVGSGGEGLRNIVDIYVES------------------------------------------------------------ 321 (1187)
T ss_pred CccCccchhhhheeeeeccC------------------------------------------------------------
Confidence 1121110 0111111110
Q ss_pred hhhhhchHHHHHHHHHHHhccCCCcEEEecCC---HHHHHHHHHHHHhcccCCCCCceEEEeccCCCChHhHHhhhCCCC
Q 002552 532 SAEQIDLGLVESTIEYICRHEGDGAILVFLTG---WNDISKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPP 608 (908)
Q Consensus 532 ~~~~~~~~li~~~l~~i~~~~~~g~iLVF~~~---~~~i~~l~~~L~~~~~~~~~~~~~v~~lH~~l~~~er~~v~~~f~ 608 (908)
..+..++. +.+.... ..|||+|. ++.++++++.|+. .++.+..+|+. .++.++.|.
T Consensus 322 -------~~~e~~~e-lvk~lG~-GgLIfV~~d~G~e~aeel~e~Lr~-------~Gi~a~~~~a~-----~~~~le~F~ 380 (1187)
T COG1110 322 -------ESLEKVVE-LVKKLGD-GGLIFVPIDYGREKAEELAEYLRS-------HGINAELIHAE-----KEEALEDFE 380 (1187)
T ss_pred -------ccHHHHHH-HHHHhCC-CeEEEEEcHHhHHHHHHHHHHHHh-------cCceEEEeecc-----chhhhhhhc
Confidence 00112222 2222223 46999999 8999999999998 67788888873 367899999
Q ss_pred CCCcEEEEec----cccccccCCCC-eEEEEeCCCccc
Q 002552 609 PNKRKIVLAT----NIAESSITIDD-VVYVVDCGKAKE 641 (908)
Q Consensus 609 ~g~~kIlvaT----~iae~GidIp~-v~~VId~g~~k~ 641 (908)
.|++.|+|.. .++-||||+|. ++|+|.+|.|+.
T Consensus 381 ~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvPk~ 418 (1187)
T COG1110 381 EGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVPKF 418 (1187)
T ss_pred cCceeEEEEecccccceeecCCchhheeEEEEecCCce
Confidence 9999999876 48999999998 899999999964
No 115
>PF04408 HA2: Helicase associated domain (HA2); InterPro: IPR007502 This presumed domain is about 90 amino acid residues in length. It is found as a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding.; GO: 0004386 helicase activity; PDB: 3I4U_A 2XAU_B 3KX2_B.
Probab=99.66 E-value=1.3e-16 Score=144.38 Aligned_cols=92 Identities=51% Similarity=0.873 Sum_probs=68.3
Q ss_pred HHHHHHHHcCCCCCCCCcCccccccccccCCchhhHHHHHhhhccChHHHHHHHhhhccCCCCCCccccHHHHH--HHHH
Q 002552 736 NAIELLKTIGALDDMENLTPLGRHLCTLPVDPNIGKMLLMGAIFQCLNPALTIAAALAHRNPFVLPVNMQKEVD--EAKR 813 (908)
Q Consensus 736 ~al~~L~~~gal~~~~~lT~lG~~~~~lpl~p~~~k~l~~~~~~~c~~~~l~i~a~l~~~~~f~~p~~~~~~~~--~~~~ 813 (908)
+|++.|+.+||||.+++||++|+.|+.||++|++||||++|+.++|++++++|||+|++.++|..|.+.++..+ ..+.
T Consensus 1 ~A~~~L~~Lgald~~~~lT~lG~~~~~lPl~p~~a~~Ll~~~~~~~~~~~~~iaa~ls~~~~f~~~~~~~~~~~~~~~~~ 80 (102)
T PF04408_consen 1 KALELLKSLGALDENGNLTPLGRKMSQLPLDPRLAKMLLYGIQFGCLDEALIIAAILSVRSPFINPDDKEENAEQDNAKK 80 (102)
T ss_dssp -HHHHHHHTTSB-TTS-B-HHHHHHTTSSS-HHHHHHHHHHHHCT-HHHHHHHHHHHTSS--B---CCGHHHHHH--HHH
T ss_pred CHHHHHHHCCCCCCCCCcCHHHHHHHHCCCchHhHhHhhhccccccHHHHHHHHHHHcCCCcccCccHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999998765443332 2444
Q ss_pred hh--------cCCCCCcHHHHH
Q 002552 814 SF--------AGDSCSDHIALL 827 (908)
Q Consensus 814 ~~--------~~~~~sD~l~~l 827 (908)
+| ..+..|||+++|
T Consensus 81 ~~~~~~~~~~~~~~~sDhltlL 102 (102)
T PF04408_consen 81 KFRIKQARKKFSDDESDHLTLL 102 (102)
T ss_dssp TT----------BTTBHHHHHH
T ss_pred HhhhhhcccccCCCCCCHHhcC
Confidence 44 346789999986
No 116
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.66 E-value=2.3e-15 Score=164.24 Aligned_cols=281 Identities=19% Similarity=0.166 Sum_probs=173.1
Q ss_pred hCCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCCEEeEEeeccccCCCC
Q 002552 296 ENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLGETVGYQIRLESKRSAQ 375 (908)
Q Consensus 296 ~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~~~~~~~g~~vg~~~~~~~~~~~~ 375 (908)
..+.++-+|||.||||.-+++-+.+. ..-++--|.|.||.+|+.|+. ..|..+....|-..+........
T Consensus 190 ~RkIi~H~GPTNSGKTy~ALqrl~~a---------ksGvycGPLrLLA~EV~~r~n-a~gipCdL~TGeE~~~~~~~~~~ 259 (700)
T KOG0953|consen 190 RRKIIMHVGPTNSGKTYRALQRLKSA---------KSGVYCGPLRLLAHEVYDRLN-ALGIPCDLLTGEERRFVLDNGNP 259 (700)
T ss_pred hheEEEEeCCCCCchhHHHHHHHhhh---------ccceecchHHHHHHHHHHHhh-hcCCCccccccceeeecCCCCCc
Confidence 45678899999999998776655442 234666799999999999994 45666666666655544333334
Q ss_pred CcEEEEchHHHHHHHhcCCCCCcceEEEEechhccchhhHHHHHHHHHHCccC-CCCcEEEecccCChHHHHhhhCCCCc
Q 002552 376 TRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRR-PDLRLILMSATINADLFSKYFGNAPT 454 (908)
Q Consensus 376 ~~Iiv~T~g~Ll~~l~~~~~l~~~~~iIiDEaHeR~~~~d~ll~~lk~~~~~~-~~~qiIlmSAT~~~~~~~~~f~~~~~ 454 (908)
...+-||-+|+- .-..|.+.||||+.. +-+.+--..+.+.++-.. .++.+.+=-|-++ +..+.
T Consensus 260 a~hvScTVEM~s-------v~~~yeVAViDEIQm-m~Dp~RGwAWTrALLGl~AdEiHLCGepsvld--lV~~i------ 323 (700)
T KOG0953|consen 260 AQHVSCTVEMVS-------VNTPYEVAVIDEIQM-MRDPSRGWAWTRALLGLAADEIHLCGEPSVLD--LVRKI------ 323 (700)
T ss_pred ccceEEEEEEee-------cCCceEEEEehhHHh-hcCcccchHHHHHHHhhhhhhhhccCCchHHH--HHHHH------
Confidence 677788887653 225789999999993 222222222222222110 0111111111110 00000
Q ss_pred cccCCccccceeeehhhHHHhhhcccCcccccccccccccccccchhhhHhhhhhcccccccccchhhhhHhhHhhhhhh
Q 002552 455 VHIPGLTFPVTDLFLEDVLEKTRYKMNSKLDSFQGNSRRSRRQDSKKDHLTALFEDVDIDSNYKNYRASTRASLEAWSAE 534 (908)
Q Consensus 455 i~v~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 (908)
....|.. |++++.+. .++..
T Consensus 324 ~k~TGd~--vev~~YeR------------------------------------------------l~pL~---------- 343 (700)
T KOG0953|consen 324 LKMTGDD--VEVREYER------------------------------------------------LSPLV---------- 343 (700)
T ss_pred HhhcCCe--eEEEeecc------------------------------------------------cCcce----------
Confidence 0000100 11111110 00000
Q ss_pred hhchHHHHHHHHHHHhccCCCcEEEecCCHHHHHHHHHHHHhcccCCCCCceEEEeccCCCChHhHHhhhCCCC--CCCc
Q 002552 535 QIDLGLVESTIEYICRHEGDGAILVFLTGWNDISKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPP--PNKR 612 (908)
Q Consensus 535 ~~~~~li~~~l~~i~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lH~~l~~~er~~v~~~f~--~g~~ 612 (908)
+.+.+..-+++-.+|+++|-. ++++|-.+...|.+. ....++.+||+||++-|..--..|. ++..
T Consensus 344 ------v~~~~~~sl~nlk~GDCvV~F-Skk~I~~~k~kIE~~------g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~ 410 (700)
T KOG0953|consen 344 ------VEETALGSLSNLKPGDCVVAF-SKKDIFTVKKKIEKA------GNHKCAVIYGSLPPETRLAQAALFNDPSNEC 410 (700)
T ss_pred ------ehhhhhhhhccCCCCCeEEEe-ehhhHHHHHHHHHHh------cCcceEEEecCCCCchhHHHHHHhCCCCCcc
Confidence 111111112234577777754 688899999999874 3456888999999987755444554 4899
Q ss_pred EEEEeccccccccCCCCeEEEEeCCCccceeeccccCccccccccccHhhHHHhccccCCC----CCcEEEEecChh
Q 002552 613 KIVLATNIAESSITIDDVVYVVDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRV----QPGVCYKLYPRI 685 (908)
Q Consensus 613 kIlvaT~iae~GidIp~v~~VId~g~~k~~~yd~~~~~~~l~~~~iS~~~~~QR~GRaGR~----~~G~~~~l~~~~ 685 (908)
+|+||||...+|+|+ +|+-||.+.+.| |+. -.+..|+..+..|-+|||||. ..|..-.|+.++
T Consensus 411 dvlVAsDAIGMGLNL-~IrRiiF~sl~K---ysg------~e~~~it~sqikQIAGRAGRf~s~~~~G~vTtl~~eD 477 (700)
T KOG0953|consen 411 DVLVASDAIGMGLNL-NIRRIIFYSLIK---YSG------RETEDITVSQIKQIAGRAGRFGSKYPQGEVTTLHSED 477 (700)
T ss_pred ceEEeeccccccccc-ceeEEEEeeccc---CCc------ccceeccHHHHHHHhhcccccccCCcCceEEEeeHhh
Confidence 999999999999999 599999888877 542 345678889999999999998 358888888775
No 117
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.65 E-value=1.1e-14 Score=174.73 Aligned_cols=343 Identities=13% Similarity=0.084 Sum_probs=174.1
Q ss_pred hHHHHHHHHHH----Hh------CCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHH
Q 002552 284 FKMKAEFLKAV----AE------NQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSE 353 (908)
Q Consensus 284 ~~~Q~~~i~~i----~~------~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~~ 353 (908)
..+|..++..+ .+ .+..+|+.+||||||......+... .. .....+||+++||++|..|+.+.+...
T Consensus 240 r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l-~~--~~~~~~vl~lvdR~~L~~Q~~~~f~~~ 316 (667)
T TIGR00348 240 RYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKA-LE--LLKNPKVFFVVDRRELDYQLMKEFQSL 316 (667)
T ss_pred HHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHH-Hh--hcCCCeEEEEECcHHHHHHHHHHHHhh
Confidence 35676666654 22 3579999999999996555444332 22 223568999999999999999988775
Q ss_pred hCCCCCCEEeEEeecccc-CCCCCcEEEEchHHHHHHHhcCC---CCCc-ceEEEEechhccchhhHHHHHHHHHHCccC
Q 002552 354 RGENLGETVGYQIRLESK-RSAQTRLLFCTTGVLLRQLVEDP---DLSC-VSHLLVDEIHERGMNEDFLLIILRDLLPRR 428 (908)
Q Consensus 354 ~~~~~g~~vg~~~~~~~~-~~~~~~Iiv~T~g~Ll~~l~~~~---~l~~-~~~iIiDEaHeR~~~~d~ll~~lk~~~~~~ 428 (908)
..... ..++..-..... ......|+|+|.+.|.+.+.... .... --+||+|||| |+....+.. .++ ...
T Consensus 317 ~~~~~-~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaH-rs~~~~~~~-~l~---~~~ 390 (667)
T TIGR00348 317 QKDCA-ERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAH-RSQYGELAK-NLK---KAL 390 (667)
T ss_pred CCCCC-cccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCc-cccchHHHH-HHH---hhC
Confidence 43211 001100000000 12246899999999986543211 1111 1289999999 765544332 222 234
Q ss_pred CCCcEEEecccCCh----HHHHhhhCCCCccccCCccccceeeehhhHHHhhhcccCcccccccccccccccccch-hhh
Q 002552 429 PDLRLILMSATINA----DLFSKYFGNAPTVHIPGLTFPVTDLFLEDVLEKTRYKMNSKLDSFQGNSRRSRRQDSK-KDH 503 (908)
Q Consensus 429 ~~~qiIlmSAT~~~----~~~~~~f~~~~~i~v~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 503 (908)
|+...++||||+-. ..+ ..|+.. .| .++..+-+.+.++.. +... . .|............+ ...
T Consensus 391 p~a~~lGfTaTP~~~~d~~t~-~~f~~~-----fg--~~i~~Y~~~~AI~dG-~~~~--i-~Y~~~~~~~~~~~~~l~~~ 458 (667)
T TIGR00348 391 KNASFFGFTGTPIFKKDRDTS-LTFAYV-----FG--RYLHRYFITDAIRDG-LTVK--I-DYEDRLPEDHLDRKKLDAF 458 (667)
T ss_pred CCCcEEEEeCCCccccccccc-ccccCC-----CC--CeEEEeeHHHHhhcC-Ceee--E-EEEecchhhccChHHHHHH
Confidence 67899999999832 111 222210 00 012222222222211 0000 0 000000000000000 000
Q ss_pred HhhhhhcccccccccchhhhhHhhHh----h---hhh-hhhchHHHHHHHHHHHhcc--CCCcEEEecCCHHHHHHHHHH
Q 002552 504 LTALFEDVDIDSNYKNYRASTRASLE----A---WSA-EQIDLGLVESTIEYICRHE--GDGAILVFLTGWNDISKLLDQ 573 (908)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~---~~~-~~~~~~li~~~l~~i~~~~--~~g~iLVF~~~~~~i~~l~~~ 573 (908)
+.+.++.... .........+. . +.. +..-......++.+..+.. ..++.+|||.++..|..+.+.
T Consensus 459 ~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~ 533 (667)
T TIGR00348 459 FDEIFELLPE-----RIREITKESLKEKLQKTKKILFNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNA 533 (667)
T ss_pred HHHHHHhhhc-----cccHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHH
Confidence 1111111000 00000000000 0 000 0000112223333433222 248999999999999999988
Q ss_pred HHhcccCCCCCceEEEeccCCCChH---------------------hHHhhhCCCCC-CCcEEEEeccccccccCCCCeE
Q 002552 574 IKVNKFLGDPNKFLVLPLHGSMPTI---------------------NQREIFDRPPP-NKRKIVLATNIAESSITIDDVV 631 (908)
Q Consensus 574 L~~~~~~~~~~~~~v~~lH~~l~~~---------------------er~~v~~~f~~-g~~kIlvaT~iae~GidIp~v~ 631 (908)
|.+.... ......+.+++....+ ..+.+.+.|+. +..+|||+++.+-+|+|.|.+.
T Consensus 534 l~~~~~~--~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP~l~ 611 (667)
T TIGR00348 534 LDEELNE--KFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPKLLIVVDMLLTGFDAPILN 611 (667)
T ss_pred HHhhccc--ccCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCceEEEEEcccccccCCCccc
Confidence 8653211 0012334444443222 12356777865 6889999999999999999998
Q ss_pred EEEeCCCccceeeccccCccccccccccHhhHHHhccccCCC
Q 002552 632 YVVDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRV 673 (908)
Q Consensus 632 ~VId~g~~k~~~yd~~~~~~~l~~~~iS~~~~~QR~GRaGR~ 673 (908)
+++-.-..+ -..++|.+||+-|.
T Consensus 612 tLyldKplk-------------------~h~LlQai~R~nR~ 634 (667)
T TIGR00348 612 TLYLDKPLK-------------------YHGLLQAIARTNRI 634 (667)
T ss_pred eEEEecccc-------------------ccHHHHHHHHhccc
Confidence 877522222 12689999999995
No 118
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.63 E-value=3.8e-14 Score=173.00 Aligned_cols=110 Identities=15% Similarity=0.137 Sum_probs=92.3
Q ss_pred CCCcEEEecCCHHHHHHHHHHHHhcccCCCCCceEEEeccCCCChHhHHhhhCCCCC---CCcEEEEeccccccccCCCC
Q 002552 553 GDGAILVFLTGWNDISKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPP---NKRKIVLATNIAESSITIDD 629 (908)
Q Consensus 553 ~~g~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lH~~l~~~er~~v~~~f~~---g~~kIlvaT~iae~GidIp~ 629 (908)
.+.+||||+.-...++.|.+.|.. .++....+||+++.++|..+++.|.. +..-+|++|.++..|||+..
T Consensus 486 ~g~KVLIFSQft~~LdiLed~L~~-------~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINLt~ 558 (1033)
T PLN03142 486 RDSRVLIFSQMTRLLDILEDYLMY-------RGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLAT 558 (1033)
T ss_pred cCCeEEeehhHHHHHHHHHHHHHH-------cCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCchhh
Confidence 467999999988888888888876 46678889999999999999999964 34568999999999999999
Q ss_pred eEEEEeCCCccceeeccccCccccccccccHhhHHHhccccCCC---CCcEEEEecChhhH
Q 002552 630 VVYVVDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRV---QPGVCYKLYPRIIH 687 (908)
Q Consensus 630 v~~VId~g~~k~~~yd~~~~~~~l~~~~iS~~~~~QR~GRaGR~---~~G~~~~l~~~~~~ 687 (908)
.++||.++.+- +.+...|++||+-|. .+=.+|+|+++...
T Consensus 559 Ad~VIiyD~dW------------------NP~~d~QAidRaHRIGQkk~V~VyRLIt~gTI 601 (1033)
T PLN03142 559 ADIVILYDSDW------------------NPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTI 601 (1033)
T ss_pred CCEEEEeCCCC------------------ChHHHHHHHHHhhhcCCCceEEEEEEEeCCcH
Confidence 99999999887 444889999999887 34568899987543
No 119
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.58 E-value=1.7e-13 Score=169.73 Aligned_cols=134 Identities=18% Similarity=0.114 Sum_probs=87.6
Q ss_pred HHHHHHHHHhccCCCcEEEecCCHHHHHHHHHHHHhcccCCCCCceEEEeccCCCChHhHHhhhCCCCCCCcEEEEeccc
Q 002552 541 VESTIEYICRHEGDGAILVFLTGWNDISKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNI 620 (908)
Q Consensus 541 i~~~l~~i~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lH~~l~~~er~~v~~~f~~g~~kIlvaT~i 620 (908)
+...+..+... .+|++|||+++.+.++.+++.|...... .++.++. .+.. ..|.++++.|+.++..||++|+.
T Consensus 662 ia~~i~~l~~~-~~g~~LVlftS~~~l~~v~~~L~~~~~~---~~~~~l~--q~~~-~~r~~ll~~F~~~~~~iLlgt~s 734 (850)
T TIGR01407 662 IASYIIEITAI-TSPKILVLFTSYEMLHMVYDMLNELPEF---EGYEVLA--QGIN-GSRAKIKKRFNNGEKAILLGTSS 734 (850)
T ss_pred HHHHHHHHHHh-cCCCEEEEeCCHHHHHHHHHHHhhhccc---cCceEEe--cCCC-ccHHHHHHHHHhCCCeEEEEcce
Confidence 34445555443 4578999999999999999998752111 1233332 2222 46888999999999999999999
Q ss_pred cccccCCCCe--EEEEeCCCccceeecccc----------Cccccccc--cccHhhHHHhccccCCCC--CcEEEEe
Q 002552 621 AESSITIDDV--VYVVDCGKAKETSYDALN----------KLACLLPS--WISKASAHQRRGRAGRVQ--PGVCYKL 681 (908)
Q Consensus 621 ae~GidIp~v--~~VId~g~~k~~~yd~~~----------~~~~l~~~--~iS~~~~~QR~GRaGR~~--~G~~~~l 681 (908)
+.+|||+|+. ..||-.++|-..--||.. +....... |-....+.|-+||.=|.. .|..+.|
T Consensus 735 f~EGVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~il 811 (850)
T TIGR01407 735 FWEGVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRLIRRENDRGSIVIL 811 (850)
T ss_pred eecccccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhccccccCCceEEEEEE
Confidence 9999999985 467778888543222211 11111111 123346889999999983 3665544
No 120
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.54 E-value=1.2e-13 Score=141.07 Aligned_cols=156 Identities=25% Similarity=0.192 Sum_probs=112.7
Q ss_pred CCCchHHHHHHHHHHHhC-CeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCC
Q 002552 280 KLPAFKMKAEFLKAVAEN-QVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENL 358 (908)
Q Consensus 280 ~lpi~~~Q~~~i~~i~~~-~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~~~~~~~ 358 (908)
..+++++|.++++.+... ++++++++||||||+.+..++++..... ...+++++.|++.++.|+..++........
T Consensus 6 ~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~---~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~ 82 (201)
T smart00487 6 FEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRG---KGKRVLVLVPTRELAEQWAEELKKLGPSLG 82 (201)
T ss_pred CCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhccc---CCCcEEEEeCCHHHHHHHHHHHHHHhccCC
Confidence 346688999999999998 9999999999999999998888876432 235799999999999999999887664322
Q ss_pred CCEEeEEeecc-----ccCCCC-CcEEEEchHHHHHHHhcCC-CCCcceEEEEechhccch--hhHHHHHHHHHHCccCC
Q 002552 359 GETVGYQIRLE-----SKRSAQ-TRLLFCTTGVLLRQLVEDP-DLSCVSHLLVDEIHERGM--NEDFLLIILRDLLPRRP 429 (908)
Q Consensus 359 g~~vg~~~~~~-----~~~~~~-~~Iiv~T~g~Ll~~l~~~~-~l~~~~~iIiDEaHeR~~--~~d~ll~~lk~~~~~~~ 429 (908)
........... .....+ .+++++|++.+.+.+.... ...++++|||||+|+... ..+.+..++.. ..+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~---~~~ 159 (201)
T smart00487 83 LKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGDQLEKLLKL---LPK 159 (201)
T ss_pred eEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCCcHHHHHHHHHh---CCc
Confidence 12221111111 011223 3999999999999988765 677899999999996432 22222233322 256
Q ss_pred CCcEEEecccCC
Q 002552 430 DLRLILMSATIN 441 (908)
Q Consensus 430 ~~qiIlmSAT~~ 441 (908)
..++++||||+.
T Consensus 160 ~~~~v~~saT~~ 171 (201)
T smart00487 160 NVQLLLLSATPP 171 (201)
T ss_pred cceEEEEecCCc
Confidence 789999999994
No 121
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.53 E-value=3.4e-13 Score=159.82 Aligned_cols=107 Identities=20% Similarity=0.221 Sum_probs=92.7
Q ss_pred CCCcEEEecCCHHHHHHHHHHHHhcccCCCCCceEEEeccCCCChHhHHhhhCCCCCCCcEEEEeccccccccCCC---C
Q 002552 553 GDGAILVFLTGWNDISKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITID---D 629 (908)
Q Consensus 553 ~~g~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lH~~l~~~er~~v~~~f~~g~~kIlvaT~iae~GidIp---~ 629 (908)
.+.++||||++++.++.|+..|.. .++....||+ .+.+|+..+..|+.+.-.|+||||+|+||+||+ +
T Consensus 597 ~grpVLIft~Sve~sE~Ls~~L~~-------~gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNMAGRGtDIkl~~~ 667 (1025)
T PRK12900 597 KGQPVLVGTASVEVSETLSRMLRA-------KRIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNMAGRGTDIKLGEG 667 (1025)
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHH-------cCCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccCcCCCCCcCCccc
Confidence 567999999999999999999998 4555667897 577888999999999999999999999999999 5
Q ss_pred eE-----EEEeCCCccceeeccccCccccccccccHhhHHHhccccCCC-CCcEEEEecChhh
Q 002552 630 VV-----YVVDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRV-QPGVCYKLYPRII 686 (908)
Q Consensus 630 v~-----~VId~g~~k~~~yd~~~~~~~l~~~~iS~~~~~QR~GRaGR~-~~G~~~~l~~~~~ 686 (908)
|. +||++..|. |...|.||+|||||. .+|.+..+++.++
T Consensus 668 V~~vGGL~VIgterhe------------------s~Rid~Ql~GRtGRqGdpGsS~ffvSleD 712 (1025)
T PRK12900 668 VRELGGLFILGSERHE------------------SRRIDRQLRGRAGRQGDPGESVFYVSLED 712 (1025)
T ss_pred hhhhCCceeeCCCCCc------------------hHHHHHHHhhhhhcCCCCcceEEEechhH
Confidence 64 448888887 566899999999999 7899999998754
No 122
>smart00847 HA2 Helicase associated domain (HA2) Add an annotation. This presumed domain is about 90 amino acid residues in length. It is found is a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding.
Probab=99.52 E-value=1.6e-14 Score=128.63 Aligned_cols=91 Identities=51% Similarity=0.797 Sum_probs=80.3
Q ss_pred HHHHHHHHcCCCCCCCCcCccccccccccCCchhhHHHHHhhhc-cChHHHHHHHhhhccCCCCCCccccHHHHHHHHHh
Q 002552 736 NAIELLKTIGALDDMENLTPLGRHLCTLPVDPNIGKMLLMGAIF-QCLNPALTIAAALAHRNPFVLPVNMQKEVDEAKRS 814 (908)
Q Consensus 736 ~al~~L~~~gal~~~~~lT~lG~~~~~lpl~p~~~k~l~~~~~~-~c~~~~l~i~a~l~~~~~f~~p~~~~~~~~~~~~~ 814 (908)
+|++.|+.+||||.+++||++|+.|+.||++|++||||+.++.+ +|.+++++|+|+++..++|..+ ..+.+....++.
T Consensus 1 ~A~~~L~~LgAld~~~~lT~lG~~m~~lPl~Prla~~Ll~a~~~~~c~~~~~~i~a~ls~~~~~~~~-~~~~~~~~~~~~ 79 (92)
T smart00847 1 AALELLYELGALDDDGRLTPLGRKMAELPLDPRLAKMLLAAAELFGCLDEILTIAAMLSVGDPFPRP-EKRAEADAARRR 79 (92)
T ss_pred CHHHHHHHCCCcCCCCCcCHHHHHHHHCCCChHHHHHHHHHHhhcCcHHHHHHHHHHhcCCCCcCCc-hHHHHHHHHHHH
Confidence 37899999999999999999999999999999999999999999 8999999999999999998766 556667777888
Q ss_pred hcCCCCCcHHHHH
Q 002552 815 FAGDSCSDHIALL 827 (908)
Q Consensus 815 ~~~~~~sD~l~~l 827 (908)
|.....|||++++
T Consensus 80 ~~~~~~~D~~~~l 92 (92)
T smart00847 80 FASGRESDHLTLL 92 (92)
T ss_pred ccCCCCCChhhhC
Confidence 8743279999863
No 123
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.50 E-value=3.2e-13 Score=129.54 Aligned_cols=137 Identities=34% Similarity=0.366 Sum_probs=98.2
Q ss_pred CeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCCEEeEEeeccccC-----
Q 002552 298 QVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLGETVGYQIRLESKR----- 372 (908)
Q Consensus 298 ~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~~~~~~~g~~vg~~~~~~~~~----- 372 (908)
+++++.++||+|||+++..++.+.... +...+++|++|++.++.+..+++...... +..+.+........
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~---~~~~~~lv~~p~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 75 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDS---LKGGQVLVLAPTRELANQVAERLKELFGE--GIKVGYLIGGTSIKQQEKL 75 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhc---ccCCCEEEEcCcHHHHHHHHHHHHHHhhC--CcEEEEEecCcchhHHHHH
Confidence 468999999999999999888876543 23458999999999999999888776643 34444444333322
Q ss_pred -CCCCcEEEEchHHHHHHHhcCC-CCCcceEEEEechhccchhhHHHHHHHHHHCccCCCCcEEEecccC
Q 002552 373 -SAQTRLLFCTTGVLLRQLVEDP-DLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILMSATI 440 (908)
Q Consensus 373 -~~~~~Iiv~T~g~Ll~~l~~~~-~l~~~~~iIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiIlmSAT~ 440 (908)
....+|+++|++.+.+.+.... ....+++|||||+|.- .................+..+++++|||+
T Consensus 76 ~~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~-~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 76 LSGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRL-LNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred hcCCCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHH-hhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 4578999999999998887654 5667999999999942 22222221122333345678999999995
No 124
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.47 E-value=1.2e-13 Score=163.85 Aligned_cols=120 Identities=21% Similarity=0.203 Sum_probs=103.8
Q ss_pred HHHHHHHHHhc-cCCCcEEEecCCHHHHHHHHHHHHhcccCCCCCceEEEeccCCCChHhHHhhhCCCCCCCcEEEEecc
Q 002552 541 VESTIEYICRH-EGDGAILVFLTGWNDISKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATN 619 (908)
Q Consensus 541 i~~~l~~i~~~-~~~g~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lH~~l~~~er~~v~~~f~~g~~kIlvaT~ 619 (908)
+..++..+... ..+.++|||+++++.++.+++.|.. .++.+..+||++++.+|.++++.|+.|...|+|||+
T Consensus 428 i~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~-------~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~ 500 (655)
T TIGR00631 428 VDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKE-------LGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGIN 500 (655)
T ss_pred HHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhh-------hccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcC
Confidence 33455555432 3467899999999999999999987 456788899999999999999999999999999999
Q ss_pred ccccccCCCCeEEEEeCC-----CccceeeccccCccccccccccHhhHHHhccccCCCCCcEEEEecChh
Q 002552 620 IAESSITIDDVVYVVDCG-----KAKETSYDALNKLACLLPSWISKASAHQRRGRAGRVQPGVCYKLYPRI 685 (908)
Q Consensus 620 iae~GidIp~v~~VId~g-----~~k~~~yd~~~~~~~l~~~~iS~~~~~QR~GRaGR~~~G~~~~l~~~~ 685 (908)
++++|+|+|++++||.++ +|+ |..+|+||+|||||...|.|+.+++..
T Consensus 501 ~L~rGfDiP~v~lVvi~DadifG~p~------------------~~~~~iqriGRagR~~~G~vi~~~~~~ 553 (655)
T TIGR00631 501 LLREGLDLPEVSLVAILDADKEGFLR------------------SERSLIQTIGRAARNVNGKVIMYADKI 553 (655)
T ss_pred hhcCCeeeCCCcEEEEeCcccccCCC------------------CHHHHHHHhcCCCCCCCCEEEEEEcCC
Confidence 999999999999999876 555 666999999999999999999888753
No 125
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.45 E-value=1.2e-11 Score=135.39 Aligned_cols=123 Identities=20% Similarity=0.179 Sum_probs=102.6
Q ss_pred HHHHHHHHHh-ccCCCcEEEecCCHHHHHHHHHHHHhcccCCCCCceEEEeccCCCChHhHHhhhCCCCCCCcEEEEecc
Q 002552 541 VESTIEYICR-HEGDGAILVFLTGWNDISKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATN 619 (908)
Q Consensus 541 i~~~l~~i~~-~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lH~~l~~~er~~v~~~f~~g~~kIlvaT~ 619 (908)
+.+++..|.. ...+.++||-+-|++.++.|.++|.+ .++++..+|+++..-||.+++...+.|...|||--|
T Consensus 432 vdDL~~EI~~r~~~~eRvLVTtLTKkmAEdLT~Yl~e-------~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGIN 504 (663)
T COG0556 432 VDDLLSEIRKRVAKNERVLVTTLTKKMAEDLTEYLKE-------LGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGIN 504 (663)
T ss_pred HHHHHHHHHHHHhcCCeEEEEeehHHHHHHHHHHHHh-------cCceEEeeeccchHHHHHHHHHHHhcCCccEEEeeh
Confidence 4455555544 23567999999999999999999998 788999999999999999999999999999999999
Q ss_pred ccccccCCCCeEEEEeCCCccceeeccccCccccccccccHhhHHHhccccCCCCCcEEEEecC
Q 002552 620 IAESSITIDDVVYVVDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRVQPGVCYKLYP 683 (908)
Q Consensus 620 iae~GidIp~v~~VId~g~~k~~~yd~~~~~~~l~~~~iS~~~~~QR~GRaGR~~~G~~~~l~~ 683 (908)
.+-.|||+|.|.+|--.|.-|+-..- |..+.+|-+|||.|.-.|+++....
T Consensus 505 LLREGLDiPEVsLVAIlDADKeGFLR-------------se~SLIQtIGRAARN~~GkvIlYAD 555 (663)
T COG0556 505 LLREGLDLPEVSLVAILDADKEGFLR-------------SERSLIQTIGRAARNVNGKVILYAD 555 (663)
T ss_pred hhhccCCCcceeEEEEeecCcccccc-------------ccchHHHHHHHHhhccCCeEEEEch
Confidence 99999999999998754444433221 5569999999999999999875544
No 126
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.44 E-value=4.1e-13 Score=127.69 Aligned_cols=104 Identities=25% Similarity=0.363 Sum_probs=94.5
Q ss_pred CCCcEEEecCCHHHHHHHHHHHHhcccCCCCCceEEEeccCCCChHhHHhhhCCCCCCCcEEEEeccccccccCCCCeEE
Q 002552 553 GDGAILVFLTGWNDISKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVY 632 (908)
Q Consensus 553 ~~g~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lH~~l~~~er~~v~~~f~~g~~kIlvaT~iae~GidIp~v~~ 632 (908)
..+++|||+++...++.+++.|.. ....+.++||+++..+|..+++.|.++..+||++|+++++|+|+|++++
T Consensus 27 ~~~~~lvf~~~~~~~~~~~~~l~~-------~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G~d~~~~~~ 99 (131)
T cd00079 27 KGGKVLIFCPSKKMLDELAELLRK-------PGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARGIDLPNVSV 99 (131)
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHh-------cCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcCcChhhCCE
Confidence 568999999999999999999986 4567899999999999999999999999999999999999999999999
Q ss_pred EEeCCCccceeeccccCccccccccccHhhHHHhccccCCC-CCcEEEEe
Q 002552 633 VVDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRV-QPGVCYKL 681 (908)
Q Consensus 633 VId~g~~k~~~yd~~~~~~~l~~~~iS~~~~~QR~GRaGR~-~~G~~~~l 681 (908)
||.++.+. +..++.|++||+||. ..|.|+.+
T Consensus 100 vi~~~~~~------------------~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 100 VINYDLPW------------------SPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred EEEeCCCC------------------CHHHheecccccccCCCCceEEeC
Confidence 99988876 667999999999999 47887753
No 127
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.42 E-value=2.1e-11 Score=141.13 Aligned_cols=128 Identities=18% Similarity=0.094 Sum_probs=90.8
Q ss_pred HHHhhcCCCchHHHHHHHHHHHhCCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHH
Q 002552 274 MLSFREKLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSE 353 (908)
Q Consensus 274 ~~~~r~~lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~~ 353 (908)
.....-.+.+|..|--..-.+++|+ |+...||+|||+.+.++++-.++. +..|-|+.|+-.||.+-++.+...
T Consensus 70 a~~R~lg~r~ydvQlig~l~Ll~G~--VaEM~TGEGKTLvA~l~a~l~AL~-----G~~VhvvT~NdyLA~RDae~m~~l 142 (764)
T PRK12326 70 AAERTLGLRPFDVQLLGALRLLAGD--VIEMATGEGKTLAGAIAAAGYALQ-----GRRVHVITVNDYLARRDAEWMGPL 142 (764)
T ss_pred HHHHHcCCCcchHHHHHHHHHhCCC--cccccCCCCHHHHHHHHHHHHHHc-----CCCeEEEcCCHHHHHHHHHHHHHH
Confidence 3333445677788877777778887 779999999998888887766543 345777789999999999888665
Q ss_pred hCCCCCCEEeEEeeccccC----CCCCcEEEEchHH-----HHHHHhcCC---CCCcceEEEEechhc
Q 002552 354 RGENLGETVGYQIRLESKR----SAQTRLLFCTTGV-----LLRQLVEDP---DLSCVSHLLVDEIHE 409 (908)
Q Consensus 354 ~~~~~g~~vg~~~~~~~~~----~~~~~Iiv~T~g~-----Ll~~l~~~~---~l~~~~~iIiDEaHe 409 (908)
+. .+|.+||+-....... .-.++|+|+|..- |-+.+...+ ....+.+.||||||.
T Consensus 143 y~-~LGLsvg~i~~~~~~~err~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDS 209 (764)
T PRK12326 143 YE-ALGLTVGWITEESTPEERRAAYACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADS 209 (764)
T ss_pred HH-hcCCEEEEECCCCCHHHHHHHHcCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhh
Confidence 53 4678888754332211 1268999999863 444443322 456789999999994
No 128
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.42 E-value=1.2e-13 Score=118.91 Aligned_cols=72 Identities=28% Similarity=0.392 Sum_probs=68.6
Q ss_pred CceEEEeccCCCChHhHHhhhCCCCCCCcEEEEeccccccccCCCCeEEEEeCCCccceeeccccCccccccccccHhhH
Q 002552 584 NKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETSYDALNKLACLLPSWISKASA 663 (908)
Q Consensus 584 ~~~~v~~lH~~l~~~er~~v~~~f~~g~~kIlvaT~iae~GidIp~v~~VId~g~~k~~~yd~~~~~~~l~~~~iS~~~~ 663 (908)
.++.+..+||++++++|+.+++.|.++..+|||||+++++|||+|++++||.++.|. |..+|
T Consensus 6 ~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~------------------~~~~~ 67 (78)
T PF00271_consen 6 KGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPW------------------SPEEY 67 (78)
T ss_dssp TTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSES------------------SHHHH
T ss_pred CCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCC------------------CHHHH
Confidence 577899999999999999999999999999999999999999999999999999988 77799
Q ss_pred HHhccccCCC
Q 002552 664 HQRRGRAGRV 673 (908)
Q Consensus 664 ~QR~GRaGR~ 673 (908)
.||+||+||.
T Consensus 68 ~Q~~GR~~R~ 77 (78)
T PF00271_consen 68 IQRIGRAGRI 77 (78)
T ss_dssp HHHHTTSSTT
T ss_pred HHHhhcCCCC
Confidence 9999999995
No 129
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.41 E-value=7.7e-13 Score=158.36 Aligned_cols=122 Identities=21% Similarity=0.173 Sum_probs=103.1
Q ss_pred HHHHHHHhc-cCCCcEEEecCCHHHHHHHHHHHHhcccCCCCCceEEEeccCCCChHhHHhhhCCCCCCCcEEEEecccc
Q 002552 543 STIEYICRH-EGDGAILVFLTGWNDISKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIA 621 (908)
Q Consensus 543 ~~l~~i~~~-~~~g~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lH~~l~~~er~~v~~~f~~g~~kIlvaT~ia 621 (908)
.++..+... ..+.++||||++++.++.+++.|.. .++.+..+||++++.+|..+++.|+.|...|+|||+++
T Consensus 434 ~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~-------~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L 506 (652)
T PRK05298 434 DLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKE-------LGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLL 506 (652)
T ss_pred HHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhh-------cceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHH
Confidence 444444332 3456899999999999999999987 56788999999999999999999999999999999999
Q ss_pred ccccCCCCeEEEEeCCCccceeeccccCccccccccccHhhHHHhccccCCCCCcEEEEecCh
Q 002552 622 ESSITIDDVVYVVDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRVQPGVCYKLYPR 684 (908)
Q Consensus 622 e~GidIp~v~~VId~g~~k~~~yd~~~~~~~l~~~~iS~~~~~QR~GRaGR~~~G~~~~l~~~ 684 (908)
++|+|+|++++||.++.+.... +-+..+|+||+|||||...|.|+.+++.
T Consensus 507 ~rGfdlp~v~lVii~d~eifG~-------------~~~~~~yiqr~GR~gR~~~G~~i~~~~~ 556 (652)
T PRK05298 507 REGLDIPEVSLVAILDADKEGF-------------LRSERSLIQTIGRAARNVNGKVILYADK 556 (652)
T ss_pred hCCccccCCcEEEEeCCccccc-------------CCCHHHHHHHhccccCCCCCEEEEEecC
Confidence 9999999999999887543110 1266799999999999999999999884
No 130
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.41 E-value=3.9e-12 Score=149.69 Aligned_cols=155 Identities=18% Similarity=0.234 Sum_probs=105.8
Q ss_pred CCCchHHHHHHHHHHHhC----CeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhC
Q 002552 280 KLPAFKMKAEFLKAVAEN----QVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERG 355 (908)
Q Consensus 280 ~lpi~~~Q~~~i~~i~~~----~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~~~~ 355 (908)
.+.+.+-|..+.+.|.+. +..++.|-||||||-.+.+.|.+.+.. +..+|+++|-..|..|+.+|+...++
T Consensus 196 ~~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~-----GkqvLvLVPEI~Ltpq~~~rf~~rFg 270 (730)
T COG1198 196 WLALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQ-----GKQVLVLVPEIALTPQLLARFKARFG 270 (730)
T ss_pred ccccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHc-----CCEEEEEeccccchHHHHHHHHHHhC
Confidence 355667888888888766 789999999999999888888776532 35788889999999999999999998
Q ss_pred CCCCCEEeE---Eeec--cc-cCCCCCcEEEEchHHHHHHHhcCCCCCcceEEEEechhccchhhH-------HHHHHHH
Q 002552 356 ENLGETVGY---QIRL--ES-KRSAQTRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNED-------FLLIILR 422 (908)
Q Consensus 356 ~~~g~~vg~---~~~~--~~-~~~~~~~Iiv~T~g~Ll~~l~~~~~l~~~~~iIiDEaHeR~~~~d-------~ll~~lk 422 (908)
.+++..-.. ..+. +. ..+...+|+++|---|.- -++++++|||||=|+-+.-.+ --+.+++
T Consensus 271 ~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF~------Pf~~LGLIIvDEEHD~sYKq~~~prYhARdvA~~R 344 (730)
T COG1198 271 AKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSALFL------PFKNLGLIIVDEEHDSSYKQEDGPRYHARDVAVLR 344 (730)
T ss_pred CChhhhcccCChHHHHHHHHHHhcCCceEEEEechhhcC------chhhccEEEEeccccccccCCcCCCcCHHHHHHHH
Confidence 665322111 1111 11 123567899998533221 468999999999996221111 0111111
Q ss_pred HHCccCCCCcEEEecccCChHHHHhh
Q 002552 423 DLLPRRPDLRLILMSATINADLFSKY 448 (908)
Q Consensus 423 ~~~~~~~~~qiIlmSAT~~~~~~~~~ 448 (908)
...-+..+|+-|||...+.+.+-
T Consensus 345 ---a~~~~~pvvLgSATPSLES~~~~ 367 (730)
T COG1198 345 ---AKKENAPVVLGSATPSLESYANA 367 (730)
T ss_pred ---HHHhCCCEEEecCCCCHHHHHhh
Confidence 22346789999999987766544
No 131
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.40 E-value=4.8e-12 Score=118.01 Aligned_cols=134 Identities=19% Similarity=0.235 Sum_probs=88.3
Q ss_pred hCCeEEEEecCCCCccch-HHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCCEEeEEeecc-ccCC
Q 002552 296 ENQVLVVSGETGCGKTTQ-LPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLGETVGYQIRLE-SKRS 373 (908)
Q Consensus 296 ~~~~vii~a~TGSGKTt~-~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~~~~~~~g~~vg~~~~~~-~~~~ 373 (908)
+++..+|-..+|+|||+. +|.++.+.+ . .+.++||+.|||.+|.++++.+. +..+.++...- ....
T Consensus 3 kg~~~~~d~hpGaGKTr~vlp~~~~~~i-~----~~~rvLvL~PTRvva~em~~aL~-------~~~~~~~t~~~~~~~~ 70 (148)
T PF07652_consen 3 KGELTVLDLHPGAGKTRRVLPEIVREAI-K----RRLRVLVLAPTRVVAEEMYEALK-------GLPVRFHTNARMRTHF 70 (148)
T ss_dssp TTEEEEEE--TTSSTTTTHHHHHHHHHH-H----TT--EEEEESSHHHHHHHHHHTT-------TSSEEEESTTSS----
T ss_pred CCceeEEecCCCCCCcccccHHHHHHHH-H----ccCeEEEecccHHHHHHHHHHHh-------cCCcccCceeeecccc
Confidence 467789999999999986 555555554 3 24689999999999998887663 22355553322 1223
Q ss_pred CCCcEEEEchHHHHHHHhcCCCCCcceEEEEechhccchhhHHHHHHHHHHCccCCCCcEEEecccCCh
Q 002552 374 AQTRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILMSATINA 442 (908)
Q Consensus 374 ~~~~Iiv~T~g~Ll~~l~~~~~l~~~~~iIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiIlmSAT~~~ 442 (908)
.+.-|.++|.+.+.+.+.+...+.+|++||+||+|--+..+=.....++..... ...++|.||||.+.
T Consensus 71 g~~~i~vMc~at~~~~~~~p~~~~~yd~II~DEcH~~Dp~sIA~rg~l~~~~~~-g~~~~i~mTATPPG 138 (148)
T PF07652_consen 71 GSSIIDVMCHATYGHFLLNPCRLKNYDVIIMDECHFTDPTSIAARGYLRELAES-GEAKVIFMTATPPG 138 (148)
T ss_dssp SSSSEEEEEHHHHHHHHHTSSCTTS-SEEEECTTT--SHHHHHHHHHHHHHHHT-TS-EEEEEESS-TT
T ss_pred CCCcccccccHHHHHHhcCcccccCccEEEEeccccCCHHHHhhheeHHHhhhc-cCeeEEEEeCCCCC
Confidence 567799999999999888755889999999999996444443444555555333 45789999999864
No 132
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.37 E-value=3.5e-12 Score=129.00 Aligned_cols=147 Identities=14% Similarity=0.106 Sum_probs=96.4
Q ss_pred CCchHHHHHHHHHHHh-------CCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHH
Q 002552 281 LPAFKMKAEFLKAVAE-------NQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSE 353 (908)
Q Consensus 281 lpi~~~Q~~~i~~i~~-------~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~~ 353 (908)
+.++++|.+++..+.+ ++.+++.+|||||||..+..++.+... ++++++|+..|+.|..+.+...
T Consensus 2 ~~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~--------~~l~~~p~~~l~~Q~~~~~~~~ 73 (184)
T PF04851_consen 2 YKLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR--------KVLIVAPNISLLEQWYDEFDDF 73 (184)
T ss_dssp -EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC--------EEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc--------ceeEecCHHHHHHHHHHHHHHh
Confidence 3567899999999884 689999999999999877766665531 7888999999999999888443
Q ss_pred hCCCCCCE--------Ee--E------EeeccccCCCCCcEEEEchHHHHHHHhcCC------------CCCcceEEEEe
Q 002552 354 RGENLGET--------VG--Y------QIRLESKRSAQTRLLFCTTGVLLRQLVEDP------------DLSCVSHLLVD 405 (908)
Q Consensus 354 ~~~~~g~~--------vg--~------~~~~~~~~~~~~~Iiv~T~g~Ll~~l~~~~------------~l~~~~~iIiD 405 (908)
........ .. + .............+++.|...|........ ....+++||+|
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~D 153 (184)
T PF04851_consen 74 GSEKYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIID 153 (184)
T ss_dssp STTSEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEEE
T ss_pred hhhhhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEEe
Confidence 32211000 00 0 000011123367899999999987765311 34578999999
Q ss_pred chhccchhhHHHHHHHHHHCccCCCCcEEEecccCC
Q 002552 406 EIHERGMNEDFLLIILRDLLPRRPDLRLILMSATIN 441 (908)
Q Consensus 406 EaHeR~~~~d~ll~~lk~~~~~~~~~qiIlmSAT~~ 441 (908)
|||+ .....-.-.+++ .+...+|+||||+.
T Consensus 154 EaH~-~~~~~~~~~i~~-----~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 154 EAHH-YPSDSSYREIIE-----FKAAFILGLTATPF 183 (184)
T ss_dssp TGGC-THHHHHHHHHHH-----SSCCEEEEEESS-S
T ss_pred hhhh-cCCHHHHHHHHc-----CCCCeEEEEEeCcc
Confidence 9994 333332222222 56678999999974
No 133
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.36 E-value=3.5e-11 Score=143.65 Aligned_cols=97 Identities=22% Similarity=0.147 Sum_probs=68.9
Q ss_pred EEEecCCHHHHHHHHHHHHhcccCCCCCceEEEeccCCCChHhHHhhhCC--------------------------CCCC
Q 002552 557 ILVFLTGWNDISKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDR--------------------------PPPN 610 (908)
Q Consensus 557 iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lH~~l~~~er~~v~~~--------------------------f~~g 610 (908)
-||=+.+.+.+..+++.|........ ..+.+.++||..+...|..+++. ...+
T Consensus 759 GliR~anI~p~V~~A~~L~~~~~~~~-~~i~~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~ 837 (1110)
T TIGR02562 759 GLIRVANIDPLIRLAQFLYALLAEEK-YQIHLCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALN 837 (1110)
T ss_pred EEEEEcCchHHHHHHHHHHhhccccC-CceeEEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccC
Confidence 46777888888888888876433222 46778899999876666443321 1135
Q ss_pred CcEEEEeccccccccCCCCeEEEEeCCCccceeeccccCccccccccccHhhHHHhccccCCCCC
Q 002552 611 KRKIVLATNIAESSITIDDVVYVVDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRVQP 675 (908)
Q Consensus 611 ~~kIlvaT~iae~GidIp~v~~VId~g~~k~~~yd~~~~~~~l~~~~iS~~~~~QR~GRaGR~~~ 675 (908)
...|+|||.|.|.|+|++ .+++|- .+.+..+.+||+||.-|.+.
T Consensus 838 ~~~i~v~Tqv~E~g~D~d-fd~~~~--------------------~~~~~~sliQ~aGR~~R~~~ 881 (1110)
T TIGR02562 838 HLFIVLATPVEEVGRDHD-YDWAIA--------------------DPSSMRSIIQLAGRVNRHRL 881 (1110)
T ss_pred CCeEEEEeeeEEEEeccc-CCeeee--------------------ccCcHHHHHHHhhccccccc
Confidence 779999999999999995 555552 11255699999999999844
No 134
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.32 E-value=7.6e-12 Score=136.51 Aligned_cols=323 Identities=15% Similarity=0.026 Sum_probs=191.9
Q ss_pred cCCCchHHHHHHHHHHHhCCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHH------HH
Q 002552 279 EKLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARV------SS 352 (908)
Q Consensus 279 ~~lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv------~~ 352 (908)
..-.-+.+|.+++..+.+|+++++.-.|.+||+++.-....+.... ......++..|+.+++....+-. -.
T Consensus 283 ~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~---~~~s~~~~~~~~~~~~~~~~~~~~V~~~~I~ 359 (1034)
T KOG4150|consen 283 TGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTL---CHATNSLLPSEMVEHLRNGSKGQVVHVEVIK 359 (1034)
T ss_pred cccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhc---CcccceecchhHHHHhhccCCceEEEEEehh
Confidence 3345567999999999999999999999999998766554443321 12335567778887765432110 01
Q ss_pred HhCCCCCCEEeEEee----cccc-CCCCCcEEEEchHHHHHHHhcCC-----CCCcceEEEEechhcc-chhhHHHHHHH
Q 002552 353 ERGENLGETVGYQIR----LESK-RSAQTRLLFCTTGVLLRQLVEDP-----DLSCVSHLLVDEIHER-GMNEDFLLIIL 421 (908)
Q Consensus 353 ~~~~~~g~~vg~~~~----~~~~-~~~~~~Iiv~T~g~Ll~~l~~~~-----~l~~~~~iIiDEaHeR-~~~~d~ll~~l 421 (908)
++.. ..|...-. .++. ...+.+++|..|.+.......+. .+-...++++||+|-- ++........+
T Consensus 360 ~~K~---A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~ 436 (1034)
T KOG4150|consen 360 ARKS---AYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFPTKALAQDQL 436 (1034)
T ss_pred hhhc---ceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecchhhHHHHHH
Confidence 1110 11110000 0000 12367899999987766554322 3445678999999942 12222222223
Q ss_pred HHHCc------cCCCCcEEEecccCC--hHHHHhhhCC--CCccccCCccccceeeehhhHHHhhhcccCcccccccccc
Q 002552 422 RDLLP------RRPDLRLILMSATIN--ADLFSKYFGN--APTVHIPGLTFPVTDLFLEDVLEKTRYKMNSKLDSFQGNS 491 (908)
Q Consensus 422 k~~~~------~~~~~qiIlmSAT~~--~~~~~~~f~~--~~~i~v~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~ 491 (908)
+.++. ...+++++-.|||+- .....+.|+- ...+++.|.+..-+...+ +.....
T Consensus 437 R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~DGSPs~~K~~V~--------WNP~~~-------- 500 (1034)
T KOG4150|consen 437 RALSDLIKGFEASINMGVYDGDTPYKDRTRLRSELANLSELELVTIDGSPSSEKLFVL--------WNPSAP-------- 500 (1034)
T ss_pred HHHHHHHHHHHhhcCcceEeCCCCcCCHHHHHHHhcCCcceEEEEecCCCCccceEEE--------eCCCCC--------
Confidence 33322 345799999999993 3345566653 334555554432221111 000000
Q ss_pred cccccccchhhhHhhhhhcccccccccchhhhhHhhHhhhhhhhhchHHHHHHHHHHHhccCCCcEEEecCCHHHHHHHH
Q 002552 492 RRSRRQDSKKDHLTALFEDVDIDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICRHEGDGAILVFLTGWNDISKLL 571 (908)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~~~~g~iLVF~~~~~~i~~l~ 571 (908)
....+++. ... ..+..++..+.. .+-++|.||+.++-|+-+.
T Consensus 501 ---P~~~~~~~--~~i-------------------------------~E~s~~~~~~i~--~~~R~IAFC~~R~~CEL~~ 542 (1034)
T KOG4150|consen 501 ---PTSKSEKS--SKV-------------------------------VEVSHLFAEMVQ--HGLRCIAFCPSRKLCELVL 542 (1034)
T ss_pred ---Ccchhhhh--hHH-------------------------------HHHHHHHHHHHH--cCCcEEEeccHHHHHHHHH
Confidence 00000000 000 001223333322 3457999999999888765
Q ss_pred HHHHhcccCC-CCCceEEEeccCCCChHhHHhhhCCCCCCCcEEEEeccccccccCCCCeEEEEeCCCccceeeccccCc
Q 002552 572 DQIKVNKFLG-DPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETSYDALNKL 650 (908)
Q Consensus 572 ~~L~~~~~~~-~~~~~~v~~lH~~l~~~er~~v~~~f~~g~~kIlvaT~iae~GidIp~v~~VId~g~~k~~~yd~~~~~ 650 (908)
...++-.... ...--.|..+.|+-..++|+++....=.|+.+-|+|||.+|-||||...+.|+..|+|.
T Consensus 543 ~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~giIaTNALELGIDIG~LDAVl~~GFP~---------- 612 (1034)
T KOG4150|consen 543 CLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLCGIIATNALELGIDIGHLDAVLHLGFPG---------- 612 (1034)
T ss_pred HHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCeeeEEEecchhhhccccccceeEEEccCch----------
Confidence 4433210000 00011244578999999999999888899999999999999999999999999999998
Q ss_pred cccccccccHhhHHHhccccCCC-CCcEEE
Q 002552 651 ACLLPSWISKASAHQRRGRAGRV-QPGVCY 679 (908)
Q Consensus 651 ~~l~~~~iS~~~~~QR~GRaGR~-~~G~~~ 679 (908)
|.+++.|..|||||. .+..+.
T Consensus 613 --------S~aNl~QQ~GRAGRRNk~SLav 634 (1034)
T KOG4150|consen 613 --------SIANLWQQAGRAGRRNKPSLAV 634 (1034)
T ss_pred --------hHHHHHHHhccccccCCCceEE
Confidence 888999999999998 555543
No 135
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.31 E-value=4.3e-10 Score=137.73 Aligned_cols=128 Identities=14% Similarity=0.072 Sum_probs=83.9
Q ss_pred HHHHHHHHHhccCCCcEEEecCCHHHHHHHHHHHHhcccCCCCCceEEEeccC-CCChHhHHhhhCCCCCCCcEEEEecc
Q 002552 541 VESTIEYICRHEGDGAILVFLTGWNDISKLLDQIKVNKFLGDPNKFLVLPLHG-SMPTINQREIFDRPPPNKRKIVLATN 619 (908)
Q Consensus 541 i~~~l~~i~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lH~-~l~~~er~~v~~~f~~g~~kIlvaT~ 619 (908)
+...+..+. ..+|++||++++.+.++.+++.|... .+.++ ..| +.+ +.++++.|+.+...||++|.
T Consensus 636 ~~~~i~~~~--~~~g~~LVLFtS~~~l~~v~~~l~~~-------~~~~l-~Qg~~~~---~~~l~~~F~~~~~~vLlG~~ 702 (820)
T PRK07246 636 IAKRLEELK--QLQQPILVLFNSKKHLLAVSDLLDQW-------QVSHL-AQEKNGT---AYNIKKRFDRGEQQILLGLG 702 (820)
T ss_pred HHHHHHHHH--hcCCCEEEEECcHHHHHHHHHHHhhc-------CCcEE-EeCCCcc---HHHHHHHHHcCCCeEEEecc
Confidence 344444444 35689999999999999999988642 22232 223 222 45578889888889999999
Q ss_pred ccccccCCC--CeEEEEeCCCccceeecccc----------Cccccccc--cccHhhHHHhccccCCCC--CcEEEEe
Q 002552 620 IAESSITID--DVVYVVDCGKAKETSYDALN----------KLACLLPS--WISKASAHQRRGRAGRVQ--PGVCYKL 681 (908)
Q Consensus 620 iae~GidIp--~v~~VId~g~~k~~~yd~~~----------~~~~l~~~--~iS~~~~~QR~GRaGR~~--~G~~~~l 681 (908)
..-+|||+| +...||-.++|-..-.||.. +-...... |--.-.+.|=+||.=|.. .|..+.|
T Consensus 703 sFwEGVD~p~~~~~~viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gvv~il 780 (820)
T PRK07246 703 SFWEGVDFVQADRMIEVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSAVLIL 780 (820)
T ss_pred hhhCCCCCCCCCeEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEEEEEE
Confidence 999999997 45667777888543333311 11111111 112346889999999983 4865544
No 136
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.29 E-value=5.3e-11 Score=128.63 Aligned_cols=296 Identities=14% Similarity=0.128 Sum_probs=167.8
Q ss_pred CCchHHHHHHHHHHHhC---CeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCC
Q 002552 281 LPAFKMKAEFLKAVAEN---QVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGEN 357 (908)
Q Consensus 281 lpi~~~Q~~~i~~i~~~---~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~~~~~~ 357 (908)
.-+.|||+..+..+..| +.-||+-|-|+|||+.-.-.+- .. ..++||++..-..+.|+.+.+..-....
T Consensus 301 t~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~------ti--kK~clvLcts~VSVeQWkqQfk~wsti~ 372 (776)
T KOG1123|consen 301 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAAC------TI--KKSCLVLCTSAVSVEQWKQQFKQWSTIQ 372 (776)
T ss_pred cccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeee------ee--cccEEEEecCccCHHHHHHHHHhhcccC
Confidence 34679999999998754 4678999999999954322111 01 2245555577788899988886654444
Q ss_pred CCCEEeEEeeccccCCCCCcEEEEchHHHH-------------HHHhcCCCCCcceEEEEechhccchhhHHHHHHHHHH
Q 002552 358 LGETVGYQIRLESKRSAQTRLLFCTTGVLL-------------RQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDL 424 (908)
Q Consensus 358 ~g~~vg~~~~~~~~~~~~~~Iiv~T~g~Ll-------------~~l~~~~~l~~~~~iIiDEaHeR~~~~d~ll~~lk~~ 424 (908)
....+-+.-........++.|+|+|.-|+. ++|.. ...+++|+||+|- +-.-.+..++..+
T Consensus 373 d~~i~rFTsd~Ke~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~----~EWGllllDEVHv--vPA~MFRRVlsiv 446 (776)
T KOG1123|consen 373 DDQICRFTSDAKERFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRG----REWGLLLLDEVHV--VPAKMFRRVLSIV 446 (776)
T ss_pred ccceEEeeccccccCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhc----CeeeeEEeehhcc--chHHHHHHHHHHH
Confidence 434343333333334457889999986653 33332 4679999999994 2222333333333
Q ss_pred CccCCCCcEEEecccCChH--HHH--hhhCCCCcccc-------CC---------ccccceeeehhhHHHhhhcccCccc
Q 002552 425 LPRRPDLRLILMSATINAD--LFS--KYFGNAPTVHI-------PG---------LTFPVTDLFLEDVLEKTRYKMNSKL 484 (908)
Q Consensus 425 ~~~~~~~qiIlmSAT~~~~--~~~--~~f~~~~~i~v-------~~---------~~~~v~~~~l~~~~~~~~~~~~~~~ 484 (908)
... --++++||+-.+ .+. +|+-++..... .| -..|....|...++.
T Consensus 447 ~aH----cKLGLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~eYL~---------- 512 (776)
T KOG1123|consen 447 QAH----CKLGLTATLVREDDKITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMTPEFYREYLR---------- 512 (776)
T ss_pred HHH----hhccceeEEeeccccccccceeecchhhhccHHHHHhCCceeEEeeeeeecCCCHHHHHHHHh----------
Confidence 222 237899998322 221 22211111100 00 001111111111000
Q ss_pred ccccccccccccccchhhhHhhhhhcccccccccchhhhhHh--hHhhhhhhhhchHHHHHHHHHHHhccCCCcEEEecC
Q 002552 485 DSFQGNSRRSRRQDSKKDHLTALFEDVDIDSNYKNYRASTRA--SLEAWSAEQIDLGLVESTIEYICRHEGDGAILVFLT 562 (908)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~li~~~l~~i~~~~~~g~iLVF~~ 562 (908)
..++. .+..++.. .+. ....+-..+. ..+.+||||..
T Consensus 513 -------------------------------------~~t~kr~lLyvMNP~--KFr-aCqfLI~~HE-~RgDKiIVFsD 551 (776)
T KOG1123|consen 513 -------------------------------------ENTRKRMLLYVMNPN--KFR-ACQFLIKFHE-RRGDKIIVFSD 551 (776)
T ss_pred -------------------------------------hhhhhhheeeecCcc--hhH-HHHHHHHHHH-hcCCeEEEEec
Confidence 00000 00001111 011 1122222232 25678999987
Q ss_pred CHHHHHHHHHHHHhcccCCCCCceEEEeccCCCChHhHHhhhCCCCCC-CcEEEEeccccccccCCCCeEEEEeCCCccc
Q 002552 563 GWNDISKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPN-KRKIVLATNIAESSITIDDVVYVVDCGKAKE 641 (908)
Q Consensus 563 ~~~~i~~l~~~L~~~~~~~~~~~~~v~~lH~~l~~~er~~v~~~f~~g-~~kIlvaT~iae~GidIp~v~~VId~g~~k~ 641 (908)
..-.....+-.|.+ -+++|..++.||.+|++.|+-+ +++-|+-.-|+.++||+|..++.|...-..
T Consensus 552 nvfALk~YAikl~K------------pfIYG~Tsq~ERm~ILqnFq~n~~vNTIFlSKVgDtSiDLPEAnvLIQISSH~- 618 (776)
T KOG1123|consen 552 NVFALKEYAIKLGK------------PFIYGPTSQNERMKILQNFQTNPKVNTIFLSKVGDTSIDLPEANVLIQISSHG- 618 (776)
T ss_pred cHHHHHHHHHHcCC------------ceEECCCchhHHHHHHHhcccCCccceEEEeeccCccccCCcccEEEEEcccc-
Confidence 65544444333322 1389999999999999999864 678888899999999999999999732111
Q ss_pred eeeccccCccccccccccHhhHHHhccccCCCC
Q 002552 642 TSYDALNKLACLLPSWISKASAHQRRGRAGRVQ 674 (908)
Q Consensus 642 ~~yd~~~~~~~l~~~~iS~~~~~QR~GRaGR~~ 674 (908)
| |+-+=.||.||.-|+.
T Consensus 619 -------G---------SRRQEAQRLGRILRAK 635 (776)
T KOG1123|consen 619 -------G---------SRRQEAQRLGRILRAK 635 (776)
T ss_pred -------c---------chHHHHHHHHHHHHHh
Confidence 1 5557789999998883
No 137
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.27 E-value=5.8e-11 Score=140.42 Aligned_cols=332 Identities=15% Similarity=0.111 Sum_probs=205.3
Q ss_pred hHHHHHHHHHH-HhCCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCCEE
Q 002552 284 FKMKAEFLKAV-AENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLGETV 362 (908)
Q Consensus 284 ~~~Q~~~i~~i-~~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~~~~~~~g~~v 362 (908)
.++|.++.+.+ ..+++++|.+|+|||||.++-+.++. .....+++++.|.-+.+...++.....++.-.|..+
T Consensus 1145 n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~------~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G~~~ 1218 (1674)
T KOG0951|consen 1145 NPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLR------PDTIGRAVYIAPLEEIADEQYRDWEKKFSKLLGLRI 1218 (1674)
T ss_pred CCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcC------CccceEEEEecchHHHHHHHHHHHHHhhccccCceE
Confidence 35677777776 45789999999999999888777765 233568999999999999888877666655555544
Q ss_pred eEEe---eccccCCCCCcEEEEchHHHHHHHhcCCCCCcceEEEEechhccc-hhh---HHHHHHHHHHCccCCCCcEEE
Q 002552 363 GYQI---RLESKRSAQTRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERG-MNE---DFLLIILRDLLPRRPDLRLIL 435 (908)
Q Consensus 363 g~~~---~~~~~~~~~~~Iiv~T~g~Ll~~l~~~~~l~~~~~iIiDEaHeR~-~~~---d~ll~~lk~~~~~~~~~qiIl 435 (908)
--.. ..+-+.....+|+++||+..... + ..+.+++.|.||.|.-+ .+. +.+..+.....+.-+.+|++.
T Consensus 1219 ~~l~ge~s~~lkl~~~~~vii~tpe~~d~l-q---~iQ~v~l~i~d~lh~igg~~g~v~evi~S~r~ia~q~~k~ir~v~ 1294 (1674)
T KOG0951|consen 1219 VKLTGETSLDLKLLQKGQVIISTPEQWDLL-Q---SIQQVDLFIVDELHLIGGVYGAVYEVICSMRYIASQLEKKIRVVA 1294 (1674)
T ss_pred EecCCccccchHHhhhcceEEechhHHHHH-h---hhhhcceEeeehhhhhcccCCceEEEEeeHHHHHHHHHhheeEEE
Confidence 2221 22223345789999999986544 2 66889999999999533 111 111222222223345689999
Q ss_pred ecccC-ChHHHHhhhCCCCcccc--CCccccceeeehhhHHHhhhcccCcccccccccccccccccchhhhHhhhhhccc
Q 002552 436 MSATI-NADLFSKYFGNAPTVHI--PGLTFPVTDLFLEDVLEKTRYKMNSKLDSFQGNSRRSRRQDSKKDHLTALFEDVD 512 (908)
Q Consensus 436 mSAT~-~~~~~~~~f~~~~~i~v--~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (908)
+|..+ ++..+ -++....+++. ..|..|.+.+.-- +. ....+...
T Consensus 1295 ls~~lana~d~-ig~s~~~v~Nf~p~~R~~Pl~i~i~~----------------~~---------~~~~~~~~------- 1341 (1674)
T KOG0951|consen 1295 LSSSLANARDL-IGASSSGVFNFSPSVRPVPLEIHIQS----------------VD---------ISHFESRM------- 1341 (1674)
T ss_pred eehhhccchhh-ccccccceeecCcccCCCceeEEEEE----------------ec---------cchhHHHH-------
Confidence 98887 55554 23333333332 2344444332210 00 00000000
Q ss_pred ccccccchhhhhHhhHhhhhhhhhchHHHHHHHHHHHh-ccCCCcEEEecCCHHHHHHHHHHHHhc--------------
Q 002552 513 IDSNYKNYRASTRASLEAWSAEQIDLGLVESTIEYICR-HEGDGAILVFLTGWNDISKLLDQIKVN-------------- 577 (908)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~-~~~~g~iLVF~~~~~~i~~l~~~L~~~-------------- 577 (908)
. ....-....+.+ ...+.+.+||+|+++.+..++..+..-
T Consensus 1342 ----------------~---------am~~~~~~ai~~~a~~~k~~~vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e 1396 (1674)
T KOG0951|consen 1342 ----------------L---------AMTKPTYTAIVRHAGNRKPAIVFLPTRKHARLVAVDLVTFSHADEPDYLLSELE 1396 (1674)
T ss_pred ----------------H---------HhhhhHHHHHHHHhcCCCCeEEEeccchhhhhhhhccchhhccCcHHHHHHHHh
Confidence 0 001111112221 124567899999999998776554321
Q ss_pred ---ccCCCCCceEEEeccCCCChHhHHhhhCCCCCCCcEEEEeccccccccCCCCeEEEEeCCCccceeeccccCccccc
Q 002552 578 ---KFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETSYDALNKLACLL 654 (908)
Q Consensus 578 ---~~~~~~~~~~v~~lH~~l~~~er~~v~~~f~~g~~kIlvaT~iae~GidIp~v~~VId~g~~k~~~yd~~~~~~~l~ 654 (908)
..+....+..|. |-+|+..+++.+-..|..|.+.|+|...- -.|+-...--+|| . .+..||.....
T Consensus 1397 ~~~~~l~e~l~~gvg--~e~~s~~d~~iv~~l~e~g~i~v~v~s~~-~~~~~~~~~lVvv-m---gt~~ydg~e~~---- 1465 (1674)
T KOG0951|consen 1397 ECDETLRESLKHGVG--HEGLSSNDQEIVQQLFEAGAIQVCVMSRD-CYGTKLKAHLVVV-M---GTQYYDGKEHS---- 1465 (1674)
T ss_pred cchHhhhhccccccc--ccccCcchHHHHHHHHhcCcEEEEEEEcc-cccccccceEEEE-e---cceeecccccc----
Confidence 011122344555 99999999999999999999999888765 7777665433333 2 35668776542
Q ss_pred cccccHhhHHHhccccCCCCCcEEEEecCh---hhHhhcCCCCCC
Q 002552 655 PSWISKASAHQRRGRAGRVQPGVCYKLYPR---IIHDAMLPYQLP 696 (908)
Q Consensus 655 ~~~iS~~~~~QR~GRaGR~~~G~~~~l~~~---~~~~~l~~~~~p 696 (908)
....+.++..|+.|+|.| .|.|+.+... +.|..+...+.|
T Consensus 1466 ~~~y~i~~ll~m~G~a~~--~~k~vi~~~~~~k~yykkfl~e~lP 1508 (1674)
T KOG0951|consen 1466 YEDYPIAELLQMVGLASG--AGKCVIMCHTPKKEYYKKFLYEPLP 1508 (1674)
T ss_pred cccCchhHHHHHhhhhcC--CccEEEEecCchHHHHHHhccCcCc
Confidence 223467799999999998 7889888764 455666666665
No 138
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.23 E-value=1e-11 Score=107.46 Aligned_cols=79 Identities=33% Similarity=0.405 Sum_probs=71.4
Q ss_pred HHHHHHhcccCCCCCceEEEeccCCCChHhHHhhhCCCCCCCcEEEEeccccccccCCCCeEEEEeCCCccceeeccccC
Q 002552 570 LLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETSYDALNK 649 (908)
Q Consensus 570 l~~~L~~~~~~~~~~~~~v~~lH~~l~~~er~~v~~~f~~g~~kIlvaT~iae~GidIp~v~~VId~g~~k~~~yd~~~~ 649 (908)
+++.|.. .++.+..+||++++++|..+++.|+.+..+||++|+++++|+|+|++++||.++.+.
T Consensus 3 l~~~l~~-------~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~--------- 66 (82)
T smart00490 3 LAELLKE-------LGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPW--------- 66 (82)
T ss_pred HHHHHHH-------CCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCC---------
Confidence 4556655 467899999999999999999999999999999999999999999999999998876
Q ss_pred ccccccccccHhhHHHhccccCCC
Q 002552 650 LACLLPSWISKASAHQRRGRAGRV 673 (908)
Q Consensus 650 ~~~l~~~~iS~~~~~QR~GRaGR~ 673 (908)
+...|.|++||++|.
T Consensus 67 ---------~~~~~~Q~~gR~~R~ 81 (82)
T smart00490 67 ---------SPASYIQRIGRAGRA 81 (82)
T ss_pred ---------CHHHHHHhhcccccC
Confidence 777999999999995
No 139
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.22 E-value=1.7e-09 Score=128.63 Aligned_cols=121 Identities=16% Similarity=0.120 Sum_probs=83.3
Q ss_pred CCchHHHHHHHHHHHhCCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCC
Q 002552 281 LPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLGE 360 (908)
Q Consensus 281 lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~~~~~~~g~ 360 (908)
+-.|..|--.--++.+|+ |..+.||+|||+.+.++++-.++. +..|-++.|+-.||.+=++.+...+. .+|.
T Consensus 81 m~~ydVQliGg~~Lh~G~--iaEM~TGEGKTLvA~l~a~l~al~-----G~~VhvvT~ndyLA~RD~e~m~~l~~-~lGl 152 (913)
T PRK13103 81 MRHFDVQLIGGMTLHEGK--IAEMRTGEGKTLVGTLAVYLNALS-----GKGVHVVTVNDYLARRDANWMRPLYE-FLGL 152 (913)
T ss_pred CCcchhHHHhhhHhccCc--cccccCCCCChHHHHHHHHHHHHc-----CCCEEEEeCCHHHHHHHHHHHHHHhc-ccCC
Confidence 455556654444445555 899999999999888888766543 34567778999999999998876654 4677
Q ss_pred EEeEEeecccc----CCCCCcEEEEchHHH-HHHHhcCC-------CCCcceEEEEechhc
Q 002552 361 TVGYQIRLESK----RSAQTRLLFCTTGVL-LRQLVEDP-------DLSCVSHLLVDEIHE 409 (908)
Q Consensus 361 ~vg~~~~~~~~----~~~~~~Iiv~T~g~L-l~~l~~~~-------~l~~~~~iIiDEaHe 409 (908)
+||.-...... ..-.++|+|+|..-| .+.|+.+- ....+.++||||+|.
T Consensus 153 ~v~~i~~~~~~~err~~Y~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDs 213 (913)
T PRK13103 153 SVGIVTPFQPPEEKRAAYAADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDS 213 (913)
T ss_pred EEEEECCCCCHHHHHHHhcCCEEEEcccccccchhhccceechhhhcccccceeEechhhh
Confidence 88865432211 112589999999875 23332221 347899999999994
No 140
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.11 E-value=4e-09 Score=124.09 Aligned_cols=103 Identities=24% Similarity=0.235 Sum_probs=72.9
Q ss_pred CCCcEEEecCCHHHHHHHHHHHHhcccCCCCCceEEEeccCCCChHhHHhhhCCCCCC-CcEEEEeccccccccCCCCeE
Q 002552 553 GDGAILVFLTGWNDISKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPN-KRKIVLATNIAESSITIDDVV 631 (908)
Q Consensus 553 ~~g~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lH~~l~~~er~~v~~~f~~g-~~kIlvaT~iae~GidIp~v~ 631 (908)
.+.+|||.+.+.+..+.++..|..... ..-.|++.-...|-+.|- ..| .-.|.||||.|.||-||.=-.
T Consensus 425 ~gqPVLVgT~SIe~SE~ls~~L~~~gi-------~h~vLNAk~~e~EA~IIa---~AG~~GaVTIATNMAGRGTDI~Lg~ 494 (925)
T PRK12903 425 KGQPILIGTAQVEDSETLHELLLEANI-------PHTVLNAKQNAREAEIIA---KAGQKGAITIATNMAGRGTDIKLSK 494 (925)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHCCC-------CceeecccchhhHHHHHH---hCCCCCeEEEecccccCCcCccCch
Confidence 467899999999999999999998433 333366543333333333 334 346999999999999996322
Q ss_pred --------EEEeCCCccceeeccccCccccccccccHhhHHHhccccCCC-CCcEEEEecC
Q 002552 632 --------YVVDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRV-QPGVCYKLYP 683 (908)
Q Consensus 632 --------~VId~g~~k~~~yd~~~~~~~l~~~~iS~~~~~QR~GRaGR~-~~G~~~~l~~ 683 (908)
+||-+..+. |+--=.|-+|||||. .||.+-.+.+
T Consensus 495 ~V~~~GGLhVIgTerhe------------------SrRIDnQLrGRaGRQGDpGss~f~lS 537 (925)
T PRK12903 495 EVLELGGLYVLGTDKAE------------------SRRIDNQLRGRSGRQGDVGESRFFIS 537 (925)
T ss_pred hHHHcCCcEEEecccCc------------------hHHHHHHHhcccccCCCCCcceEEEe
Confidence 888877776 333445999999999 6787655544
No 141
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.09 E-value=1.6e-08 Score=126.29 Aligned_cols=135 Identities=17% Similarity=0.173 Sum_probs=87.7
Q ss_pred HHHHHHHHHhccCCCcEEEecCCHHHHHHHHHHHHhcccCCCCCceEEEeccCCCChHhHHhhhCCCCCCCcEEEEeccc
Q 002552 541 VESTIEYICRHEGDGAILVFLTGWNDISKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNI 620 (908)
Q Consensus 541 i~~~l~~i~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lH~~l~~~er~~v~~~f~~g~~kIlvaT~i 620 (908)
+...+..+.. ..+|.+|||+++.+.++.+++.|...... .++.++. . ++....|.++++.|+.+...||++|..
T Consensus 740 la~~i~~l~~-~~~g~~LVLFtSy~~l~~v~~~l~~~~~~---~~~~ll~-Q-g~~~~~r~~l~~~F~~~~~~iLlG~~s 813 (928)
T PRK08074 740 VAAYIAKIAK-ATKGRMLVLFTSYEMLKKTYYNLKNEEEL---EGYVLLA-Q-GVSSGSRARLTKQFQQFDKAILLGTSS 813 (928)
T ss_pred HHHHHHHHHH-hCCCCEEEEECCHHHHHHHHHHHhhcccc---cCceEEe-c-CCCCCCHHHHHHHHHhcCCeEEEecCc
Confidence 3444444443 34678999999999999999999753211 1233332 2 333345777888898888899999999
Q ss_pred cccccCCCC--eEEEEeCCCccceeecccc----------Ccccccc--ccccHhhHHHhccccCCCC--CcEEEEe
Q 002552 621 AESSITIDD--VVYVVDCGKAKETSYDALN----------KLACLLP--SWISKASAHQRRGRAGRVQ--PGVCYKL 681 (908)
Q Consensus 621 ae~GidIp~--v~~VId~g~~k~~~yd~~~----------~~~~l~~--~~iS~~~~~QR~GRaGR~~--~G~~~~l 681 (908)
..+|||+|+ +.+||-.++|-..--||.. +-..... .|.....+.|-+||.=|.. .|..+.|
T Consensus 814 FwEGVD~pg~~l~~viI~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v~il 890 (928)
T PRK08074 814 FWEGIDIPGDELSCLVIVRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTVFVL 890 (928)
T ss_pred ccCccccCCCceEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEEEEe
Confidence 999999998 5889888888532222211 1111111 1223456789999998883 4765544
No 142
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.08 E-value=4.1e-09 Score=119.94 Aligned_cols=367 Identities=17% Similarity=0.154 Sum_probs=192.6
Q ss_pred CchHHHHHHHHH----HHhCCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCC
Q 002552 282 PAFKMKAEFLKA----VAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGEN 357 (908)
Q Consensus 282 pi~~~Q~~~i~~----i~~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~~~~~~ 357 (908)
.+.+||-+.+.- ..++-+.|+.-+-|=|||.|..-++...... ++..+.-||++|.-.|. .+.+++++..- .
T Consensus 167 ~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQtIs~l~yl~~~--~~~~GPfLVi~P~StL~-NW~~Ef~rf~P-~ 242 (971)
T KOG0385|consen 167 ELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQTISLLGYLKGR--KGIPGPFLVIAPKSTLD-NWMNEFKRFTP-S 242 (971)
T ss_pred ccchhhhccHHHHHHHHhcCcccEeehhcccchHHHHHHHHHHHHHh--cCCCCCeEEEeeHhhHH-HHHHHHHHhCC-C
Confidence 345677665544 3467789999999999998776555433221 33344567788977765 34455655432 2
Q ss_pred CCCEEeEEeec--------cccCCCCCcEEEEchHHHHHHHhcCCCCCcceEEEEechhccchhhHHH-HHHHHHHCccC
Q 002552 358 LGETVGYQIRL--------ESKRSAQTRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFL-LIILRDLLPRR 428 (908)
Q Consensus 358 ~g~~vg~~~~~--------~~~~~~~~~Iiv~T~g~Ll~~l~~~~~l~~~~~iIiDEaHeR~~~~d~l-l~~lk~~~~~~ 428 (908)
+ ..+-|.-.. +-......+|+++|.++.++.-. --.--+.++||||||| |--+..-. ...++.+..
T Consensus 243 l-~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~dk~-~lk~~~W~ylvIDEaH-RiKN~~s~L~~~lr~f~~-- 317 (971)
T KOG0385|consen 243 L-NVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKDKS-FLKKFNWRYLVIDEAH-RIKNEKSKLSKILREFKT-- 317 (971)
T ss_pred c-ceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhhHH-HHhcCCceEEEechhh-hhcchhhHHHHHHHHhcc--
Confidence 2 223333111 11122378999999999886411 0011356899999999 65554433 334444332
Q ss_pred CCCcEEEecccC---C------------------hHHHHhhhCCCCcc---ccCCccccceeeeh-hhHHHhhh--cccC
Q 002552 429 PDLRLILMSATI---N------------------ADLFSKYFGNAPTV---HIPGLTFPVTDLFL-EDVLEKTR--YKMN 481 (908)
Q Consensus 429 ~~~qiIlmSAT~---~------------------~~~~~~~f~~~~~i---~v~~~~~~v~~~~l-~~~~~~~~--~~~~ 481 (908)
..-++++.|+ + .+.|.+||...... .+-.+.+.|-..|+ ..+-.... ...+
T Consensus 318 --~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe~sLppK 395 (971)
T KOG0385|consen 318 --DNRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDVEKSLPPK 395 (971)
T ss_pred --cceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHHhHhhcCCCc
Confidence 3456777775 1 23456677532100 00001111111111 00000000 0111
Q ss_pred ccccccccccccccc----------------ccchhhhHhhhhh----cccccccccchhh----hhHhhHhhhhhhhhc
Q 002552 482 SKLDSFQGNSRRSRR----------------QDSKKDHLTALFE----DVDIDSNYKNYRA----STRASLEAWSAEQID 537 (908)
Q Consensus 482 ~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~----~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 537 (908)
.+...+.+.+...+. ....+..+..++- +++-.--+..+.+ .+.+-+..-++ .
T Consensus 396 kE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg~pyttdehLv~nSG---K 472 (971)
T KOG0385|consen 396 KELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPGPPYTTDEHLVTNSG---K 472 (971)
T ss_pred ceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCCCCCCCcchHHHhcCc---c
Confidence 111111111111000 0000011111110 0000000000000 00000000000 1
Q ss_pred hHHHHHHHHHHHhccCCCcEEEecCCHHHHHHHHHHHHhcccCCCCCceEEEeccCCCChHhHHhhhCCCCCC---CcEE
Q 002552 538 LGLVESTIEYICRHEGDGAILVFLTGWNDISKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPN---KRKI 614 (908)
Q Consensus 538 ~~li~~~l~~i~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lH~~l~~~er~~v~~~f~~g---~~kI 614 (908)
..++..++..+. ..+.+||||-.--...+-|.++..- .+|...-+-|+++.++|...++.|... +.-.
T Consensus 473 m~vLDkLL~~Lk--~~GhRVLIFSQmt~mLDILeDyc~~-------R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiF 543 (971)
T KOG0385|consen 473 MLVLDKLLPKLK--EQGHRVLIFSQMTRMLDILEDYCML-------RGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIF 543 (971)
T ss_pred eehHHHHHHHHH--hCCCeEEEeHHHHHHHHHHHHHHHh-------cCceeEeecCCCCcHHHHHHHHhcCCCCcceEEE
Confidence 122344444444 4577999997655555555555443 567788899999999999999888543 4567
Q ss_pred EEeccccccccCCCCeEEEEeCCCccceeeccccCccccccccccHhhHHHhccccCCCCCcEEEEecChhh
Q 002552 615 VLATNIAESSITIDDVVYVVDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRVQPGVCYKLYPRII 686 (908)
Q Consensus 615 lvaT~iae~GidIp~v~~VId~g~~k~~~yd~~~~~~~l~~~~iS~~~~~QR~GRaGR~~~G~~~~l~~~~~ 686 (908)
+++|-...-|||+-..+.||-||-- +||... -++.+|+-|.|-..+=++|||+++..
T Consensus 544 lLSTRAGGLGINL~aADtVIlyDSD----WNPQ~D-----------LQAmDRaHRIGQ~K~V~V~RLitent 600 (971)
T KOG0385|consen 544 LLSTRAGGLGINLTAADTVILYDSD----WNPQVD-----------LQAMDRAHRIGQKKPVVVYRLITENT 600 (971)
T ss_pred EEeccccccccccccccEEEEecCC----CCchhh-----------hHHHHHHHhhCCcCceEEEEEeccch
Confidence 8999999999999999999976533 344332 27889999999999999999999754
No 143
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.06 E-value=1.3e-08 Score=119.24 Aligned_cols=321 Identities=18% Similarity=0.170 Sum_probs=172.1
Q ss_pred hCCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCCEEeEEeeccccCC-C
Q 002552 296 ENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLGETVGYQIRLESKRS-A 374 (908)
Q Consensus 296 ~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~~~~~~~g~~vg~~~~~~~~~~-~ 374 (908)
...+.+|.+|.||||||++..++.+.+- .+..+|+++.-||.|+.+++.++....- ...+-|......... .
T Consensus 48 ~~~V~vVRSpMGTGKTtaLi~wLk~~l~----~~~~~VLvVShRrSL~~sL~~rf~~~~l---~gFv~Y~d~~~~~i~~~ 120 (824)
T PF02399_consen 48 KRGVLVVRSPMGTGKTTALIRWLKDALK----NPDKSVLVVSHRRSLTKSLAERFKKAGL---SGFVNYLDSDDYIIDGR 120 (824)
T ss_pred CCCeEEEECCCCCCcHHHHHHHHHHhcc----CCCCeEEEEEhHHHHHHHHHHHHhhcCC---Ccceeeecccccccccc
Confidence 5678999999999999999887766531 2356899999999999999999865321 122333221111111 1
Q ss_pred CCcEEEEchHHHHHHHhcCCCCCcceEEEEechhcc--chhh------HHHHHHHHHHCccCCCCcEEEecccCChHH--
Q 002552 375 QTRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHER--GMNE------DFLLIILRDLLPRRPDLRLILMSATINADL-- 444 (908)
Q Consensus 375 ~~~Iiv~T~g~Ll~~l~~~~~l~~~~~iIiDEaHeR--~~~~------d~ll~~lk~~~~~~~~~qiIlmSAT~~~~~-- 444 (908)
..+-++++...|.+.. .+.+.++++|||||+-.- .+.. .-...+++.+++. .-++|+|-||++...
T Consensus 121 ~~~rLivqIdSL~R~~--~~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~--ak~VI~~DA~ln~~tvd 196 (824)
T PF02399_consen 121 PYDRLIVQIDSLHRLD--GSLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRN--AKTVIVMDADLNDQTVD 196 (824)
T ss_pred ccCeEEEEehhhhhcc--cccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHh--CCeEEEecCCCCHHHHH
Confidence 2355566666676643 336888999999999841 1111 1222334444433 358999999998764
Q ss_pred HHhhhCCCCcccc-CCc----ccccee-eehhhHHHhhhcccCcccccccccccccccccchhhhHhhhhhccccccccc
Q 002552 445 FSKYFGNAPTVHI-PGL----TFPVTD-LFLEDVLEKTRYKMNSKLDSFQGNSRRSRRQDSKKDHLTALFEDVDIDSNYK 518 (908)
Q Consensus 445 ~~~~f~~~~~i~v-~~~----~~~v~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 (908)
|-+.+.+..-+++ .+. .|.-.. .++.... .+.+...+...+...+..
T Consensus 197 Fl~~~Rp~~~i~vI~n~y~~~~fs~R~~~~~~~l~---------------------------~~~l~~~~~~~~~~~~~~ 249 (824)
T PF02399_consen 197 FLASCRPDENIHVIVNTYASPGFSNRRCTFLRSLG---------------------------TDTLAAALNPEDENADTS 249 (824)
T ss_pred HHHHhCCCCcEEEEEeeeecCCcccceEEEecccC---------------------------cHHHHHHhCCcccccccC
Confidence 4444543322222 110 011000 1111100 000111110000000000
Q ss_pred ---chhhhhHhhHhhhhhhhhchHHHHHHHHHHHhccCCCcEEEecCCHHHHHHHHHHHHhcccCCCCCceEEEeccCCC
Q 002552 519 ---NYRASTRASLEAWSAEQIDLGLVESTIEYICRHEGDGAILVFLTGWNDISKLLDQIKVNKFLGDPNKFLVLPLHGSM 595 (908)
Q Consensus 519 ---~~~~~~~~~~~~~~~~~~~~~li~~~l~~i~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lH~~l 595 (908)
..++..... ..... ........+...+ ..+.+|-||+.|....+.+++.... ....|+.++|.-
T Consensus 250 ~~~~~~~~~~~~-~~~~~--~~~tF~~~L~~~L---~~gknIcvfsSt~~~~~~v~~~~~~-------~~~~Vl~l~s~~ 316 (824)
T PF02399_consen 250 PTPKHSPDPTAT-AAISN--DETTFFSELLARL---NAGKNICVFSSTVSFAEIVARFCAR-------FTKKVLVLNSTD 316 (824)
T ss_pred CCcCCCCccccc-ccccc--chhhHHHHHHHHH---hCCCcEEEEeChHHHHHHHHHHHHh-------cCCeEEEEcCCC
Confidence 000000000 00000 0001112222233 2355788899999988888888776 355677788766
Q ss_pred ChHhHHhhhCCCCCCCcEEEEeccccccccCCCCeEEEEeCCCccceeeccccCccccccccccHhhHHHhccccCCCCC
Q 002552 596 PTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRVQP 675 (908)
Q Consensus 596 ~~~er~~v~~~f~~g~~kIlvaT~iae~GidIp~v~~VId~g~~k~~~yd~~~~~~~l~~~~iS~~~~~QR~GRaGR~~~ 675 (908)
+.. .+. . =++.+|++=|++...|+++.+..+=--|...+...+- -+..+..|++||.-....
T Consensus 317 ~~~---dv~-~--W~~~~VviYT~~itvG~Sf~~~HF~~~f~yvk~~~~g------------pd~~s~~Q~lgRvR~l~~ 378 (824)
T PF02399_consen 317 KLE---DVE-S--WKKYDVVIYTPVITVGLSFEEKHFDSMFAYVKPMSYG------------PDMVSVYQMLGRVRSLLD 378 (824)
T ss_pred Ccc---ccc-c--ccceeEEEEeceEEEEeccchhhceEEEEEecCCCCC------------CcHHHHHHHHHHHHhhcc
Confidence 554 232 2 2568999999999999999765432222233321111 133478999999966666
Q ss_pred cEEEEecChh
Q 002552 676 GVCYKLYPRI 685 (908)
Q Consensus 676 G~~~~l~~~~ 685 (908)
...|..+...
T Consensus 379 ~ei~v~~d~~ 388 (824)
T PF02399_consen 379 NEIYVYIDAS 388 (824)
T ss_pred CeEEEEEecc
Confidence 6766666543
No 144
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.02 E-value=1.7e-08 Score=119.61 Aligned_cols=122 Identities=17% Similarity=0.120 Sum_probs=79.8
Q ss_pred CCCchHHHHHHHHHHHhCCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCC
Q 002552 280 KLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLG 359 (908)
Q Consensus 280 ~lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~~~~~~~g 359 (908)
.+.++..| ++-.+.-++--|+.+.||.|||+.+.++++-..+. +..|-|+.+...||..-++.+...+ ..+|
T Consensus 74 G~r~ydvQ--lig~l~L~~G~IaEm~TGEGKTL~a~l~ayl~aL~-----G~~VhVvT~NdyLA~RD~e~m~pvy-~~LG 145 (870)
T CHL00122 74 GLRHFDVQ--LIGGLVLNDGKIAEMKTGEGKTLVATLPAYLNALT-----GKGVHIVTVNDYLAKRDQEWMGQIY-RFLG 145 (870)
T ss_pred CCCCCchH--hhhhHhhcCCccccccCCCCchHHHHHHHHHHHhc-----CCceEEEeCCHHHHHHHHHHHHHHH-HHcC
Confidence 34455555 55555445556999999999998888887654442 2346666789999998887665442 3456
Q ss_pred CEEeEEeeccc----cCCCCCcEEEEchH-----HHHHHHhcCC---CCCcceEEEEechhc
Q 002552 360 ETVGYQIRLES----KRSAQTRLLFCTTG-----VLLRQLVEDP---DLSCVSHLLVDEIHE 409 (908)
Q Consensus 360 ~~vg~~~~~~~----~~~~~~~Iiv~T~g-----~Ll~~l~~~~---~l~~~~~iIiDEaHe 409 (908)
.+||....... +..=.++|+|+|.. .|-+.+...+ ....+.+.||||||.
T Consensus 146 Lsvg~i~~~~~~~err~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDS 207 (870)
T CHL00122 146 LTVGLIQEGMSSEERKKNYLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDS 207 (870)
T ss_pred CceeeeCCCCChHHHHHhcCCCCEecCCccccccchhhccCcChHHhhccccceeeeecchh
Confidence 67776433221 11226899999985 4555443322 456789999999994
No 145
>COG4889 Predicted helicase [General function prediction only]
Probab=98.88 E-value=6.4e-09 Score=119.21 Aligned_cols=76 Identities=18% Similarity=0.231 Sum_probs=59.6
Q ss_pred ceEEEeccCCCChHhHHhhh---CCCCCCCcEEEEeccccccccCCCCeEEEEeCCCccceeeccccCccccccccccHh
Q 002552 585 KFLVLPLHGSMPTINQREIF---DRPPPNKRKIVLATNIAESSITIDDVVYVVDCGKAKETSYDALNKLACLLPSWISKA 661 (908)
Q Consensus 585 ~~~v~~lH~~l~~~er~~v~---~~f~~g~~kIlvaT~iae~GidIp~v~~VId~g~~k~~~yd~~~~~~~l~~~~iS~~ 661 (908)
.+.+--..|.|...+|...+ ..|.+..+|||----.+.+|||+|..+-||.++.-+ |.-
T Consensus 499 ~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcLSEGVDVPaLDsViFf~pr~------------------smV 560 (1518)
T COG4889 499 KISIDHVDGTMNALERLDLLELKNTFEPNECKILSNARCLSEGVDVPALDSVIFFDPRS------------------SMV 560 (1518)
T ss_pred eEEeecccccccHHHHHHHHhccCCCCcchheeeccchhhhcCCCccccceEEEecCch------------------hHH
Confidence 33444455778888875443 357889999998888999999999999999866555 556
Q ss_pred hHHHhccccCCCCCcEE
Q 002552 662 SAHQRRGRAGRVQPGVC 678 (908)
Q Consensus 662 ~~~QR~GRaGR~~~G~~ 678 (908)
+.+|-+||.=|..+|+-
T Consensus 561 DIVQaVGRVMRKa~gK~ 577 (1518)
T COG4889 561 DIVQAVGRVMRKAKGKK 577 (1518)
T ss_pred HHHHHHHHHHHhCcCCc
Confidence 99999999999977753
No 146
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=98.86 E-value=1e-07 Score=112.95 Aligned_cols=122 Identities=17% Similarity=0.117 Sum_probs=80.0
Q ss_pred CCCchHHHHHHHHHHHhCCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCC
Q 002552 280 KLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLG 359 (908)
Q Consensus 280 ~lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~~~~~~~g 359 (908)
.+-+|..|--.--++.+|+ |..+.||-|||+.+.++++-..+. +..|-|+.+..-||..=++.+...+ .-+|
T Consensus 83 G~r~ydVQliGgl~Lh~G~--IAEM~TGEGKTL~atlpaylnAL~-----GkgVhVVTvNdYLA~RDae~m~~vy-~~LG 154 (939)
T PRK12902 83 GMRHFDVQLIGGMVLHEGQ--IAEMKTGEGKTLVATLPSYLNALT-----GKGVHVVTVNDYLARRDAEWMGQVH-RFLG 154 (939)
T ss_pred CCCcchhHHHhhhhhcCCc--eeeecCCCChhHHHHHHHHHHhhc-----CCCeEEEeCCHHHHHhHHHHHHHHH-HHhC
Confidence 3455555544444444555 899999999999988888766653 2345566677888877766654433 2356
Q ss_pred CEEeEEeecc----ccCCCCCcEEEEchHHH-----HHHHhcCC---CCCcceEEEEechhc
Q 002552 360 ETVGYQIRLE----SKRSAQTRLLFCTTGVL-----LRQLVEDP---DLSCVSHLLVDEIHE 409 (908)
Q Consensus 360 ~~vg~~~~~~----~~~~~~~~Iiv~T~g~L-----l~~l~~~~---~l~~~~~iIiDEaHe 409 (908)
.+||...... .+..=.++|+|+|+.-| .+.+.... ....+.+.||||||.
T Consensus 155 Ltvg~i~~~~~~~err~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDS 216 (939)
T PRK12902 155 LSVGLIQQDMSPEERKKNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDS 216 (939)
T ss_pred CeEEEECCCCChHHHHHhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEecccc
Confidence 7777653321 11123789999999755 55554332 467889999999994
No 147
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=98.80 E-value=6.8e-07 Score=108.41 Aligned_cols=129 Identities=10% Similarity=0.141 Sum_probs=82.7
Q ss_pred HHHHHHHHHhccCCCcEEEecCCHHHHHHHHHHHHhcccCCCCCceEEEeccCCCChHhHHhhhCCC----CCCCcEEEE
Q 002552 541 VESTIEYICRHEGDGAILVFLTGWNDISKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRP----PPNKRKIVL 616 (908)
Q Consensus 541 i~~~l~~i~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lH~~l~~~er~~v~~~f----~~g~~kIlv 616 (908)
+...+..++. .+|.+|||+++.+.++.+++.|... .++.++ .++.. .+..+++.| ..+...||+
T Consensus 523 ~~~~i~~l~~--~~gg~LVlFtSy~~l~~v~~~l~~~------~~~~ll-~Q~~~---~~~~ll~~f~~~~~~~~~~VL~ 590 (697)
T PRK11747 523 MAEFLPELLE--KHKGSLVLFASRRQMQKVADLLPRD------LRLMLL-VQGDQ---PRQRLLEKHKKRVDEGEGSVLF 590 (697)
T ss_pred HHHHHHHHHh--cCCCEEEEeCcHHHHHHHHHHHHHh------cCCcEE-EeCCc---hHHHHHHHHHHHhccCCCeEEE
Confidence 4455555555 3455899999999999999988752 122333 35543 345566444 457788999
Q ss_pred eccccccccCCCC--eEEEEeCCCccceeecccc----------Ccccccc--ccccHhhHHHhccccCCCC--CcEEEE
Q 002552 617 ATNIAESSITIDD--VVYVVDCGKAKETSYDALN----------KLACLLP--SWISKASAHQRRGRAGRVQ--PGVCYK 680 (908)
Q Consensus 617 aT~iae~GidIp~--v~~VId~g~~k~~~yd~~~----------~~~~l~~--~~iS~~~~~QR~GRaGR~~--~G~~~~ 680 (908)
+|....+|||+|+ +++||-.++|-..--||.. +...... .+--...+.|-+||.=|.. .|..+.
T Consensus 591 g~~sf~EGVD~pGd~l~~vII~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~D~G~i~i 670 (697)
T PRK11747 591 GLQSFAEGLDLPGDYLTQVIITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQDRGRVTI 670 (697)
T ss_pred EeccccccccCCCCceEEEEEEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCCceEEEEE
Confidence 9999999999987 8999998988542222211 1111110 1112335789999998883 476554
Q ss_pred e
Q 002552 681 L 681 (908)
Q Consensus 681 l 681 (908)
|
T Consensus 671 l 671 (697)
T PRK11747 671 L 671 (697)
T ss_pred E
Confidence 4
No 148
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=98.79 E-value=3.3e-07 Score=109.80 Aligned_cols=135 Identities=18% Similarity=0.243 Sum_probs=100.0
Q ss_pred cCCCcEEEecCCHHHHHHHHHHHHhcccCCCCCceEEEeccCCCChHhHHhhhCCCCC---CCcEEEEeccccccccCCC
Q 002552 552 EGDGAILVFLTGWNDISKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPP---NKRKIVLATNIAESSITID 628 (908)
Q Consensus 552 ~~~g~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lH~~l~~~er~~v~~~f~~---g~~kIlvaT~iae~GidIp 628 (908)
..+.+||||-.-.+..+-|+++|.. .+|..--|-|.+..+.|+.+++.|.. ...-.|+||-...-|||+-
T Consensus 697 ~~GHrVLIFSQMVRmLDIL~eYL~~-------r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINLa 769 (1373)
T KOG0384|consen 697 EGGHRVLIFSQMVRMLDILAEYLSL-------RGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLA 769 (1373)
T ss_pred cCCceEEEhHHHHHHHHHHHHHHHH-------cCCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCccccccc
Confidence 3457999999988888999999987 34555569999999999999998854 4678999999999999999
Q ss_pred CeEEEEeCCCccceeeccccCccccccccccHhhHHHhccccCCCCCcEEEEecChhhHhh-cCCCCCCccccCchHHHH
Q 002552 629 DVVYVVDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRVQPGVCYKLYPRIIHDA-MLPYQLPEILRTPLQELC 707 (908)
Q Consensus 629 ~v~~VId~g~~k~~~yd~~~~~~~l~~~~iS~~~~~QR~GRaGR~~~G~~~~l~~~~~~~~-l~~~~~pei~r~~L~~~~ 707 (908)
..+.||.|| ..+||.+.+ ++.-|+-|.|-...=..|||.|+..|+. |.+. .-+..-|+.++
T Consensus 770 tADTVIIFD----SDWNPQNDL-----------QAqARaHRIGQkk~VnVYRLVTk~TvEeEilER---Ak~KmvLD~aV 831 (1373)
T KOG0384|consen 770 TADTVIIFD----SDWNPQNDL-----------QAQARAHRIGQKKHVNVYRLVTKNTVEEEILER---AKLKMVLDHAV 831 (1373)
T ss_pred ccceEEEeC----CCCCcchHH-----------HHHHHHHhhcccceEEEEEEecCCchHHHHHHH---HHHHhhhHHHH
Confidence 999888764 335555543 5556666777777778999999987752 2111 01234566666
Q ss_pred HHHh
Q 002552 708 LHIK 711 (908)
Q Consensus 708 L~~~ 711 (908)
++.-
T Consensus 832 IQ~m 835 (1373)
T KOG0384|consen 832 IQRM 835 (1373)
T ss_pred HHhh
Confidence 6643
No 149
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.77 E-value=1.7e-07 Score=114.55 Aligned_cols=132 Identities=14% Similarity=0.157 Sum_probs=81.2
Q ss_pred HHHHHHHHHhccCCCcEEEecCCHHHHHHHHHHHHhcccCCCC-CceEEEeccCCCChHhHHhhhCCCCC----CCcEEE
Q 002552 541 VESTIEYICRHEGDGAILVFLTGWNDISKLLDQIKVNKFLGDP-NKFLVLPLHGSMPTINQREIFDRPPP----NKRKIV 615 (908)
Q Consensus 541 i~~~l~~i~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~~~~-~~~~v~~lH~~l~~~er~~v~~~f~~----g~~kIl 615 (908)
+...+..+++. .+|.+|||+|+....+.+.+.+......... ....++. -+ -...++..+++.|+. |.-.||
T Consensus 510 l~~~i~~~~~~-~pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~~k~i~~-E~-~~~~~~~~~l~~f~~~~~~~~gavL 586 (705)
T TIGR00604 510 LGELLVEFSKI-IPDGIVVFFPSYSYLENIVSTWKEMGILENIEKKKLIFV-ET-KDAQETSDALERYKQAVSEGRGAVL 586 (705)
T ss_pred HHHHHHHHhhc-CCCcEEEEccCHHHHHHHHHHHHhcCHHHHHhcCCCEEE-eC-CCcchHHHHHHHHHHHHhcCCceEE
Confidence 44555555544 3578999999999999999888753221100 0111221 11 111466778888843 455799
Q ss_pred Eec--cccccccCCCC--eEEEEeCCCccceeeccccCc--ccc-------cc-cc---ccHhhHHHhccccCCCCC
Q 002552 616 LAT--NIAESSITIDD--VVYVVDCGKAKETSYDALNKL--ACL-------LP-SW---ISKASAHQRRGRAGRVQP 675 (908)
Q Consensus 616 vaT--~iae~GidIp~--v~~VId~g~~k~~~yd~~~~~--~~l-------~~-~~---iS~~~~~QR~GRaGR~~~ 675 (908)
+|+ ..+.+|||++| .+.||-.|+|-....|+.... ..+ .. .| -..-...|-+||+=|...
T Consensus 587 ~av~gGk~sEGIDf~~~~~r~ViivGlPf~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~a~~~v~QaiGR~IR~~~ 663 (705)
T TIGR00604 587 LSVAGGKVSEGIDFCDDLGRAVIMVGIPYEYTESRILLARLEFLRDQYPIRENQDFYEFDAMRAVNQAIGRVIRHKD 663 (705)
T ss_pred EEecCCcccCccccCCCCCcEEEEEccCCCCCCCHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHhCccccCcC
Confidence 999 88999999998 789999999974333322110 000 00 11 122356789999999944
No 150
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=98.74 E-value=2.5e-06 Score=100.72 Aligned_cols=108 Identities=15% Similarity=0.201 Sum_probs=77.6
Q ss_pred EEEecCCHHHHHHHHHHHHhcccCCCCCceEEEeccCCCChHhHHhhhCCCCC--CC-cEEEEeccccccccCCCCeEEE
Q 002552 557 ILVFLTGWNDISKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPP--NK-RKIVLATNIAESSITIDDVVYV 633 (908)
Q Consensus 557 iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lH~~l~~~er~~v~~~f~~--g~-~kIlvaT~iae~GidIp~v~~V 633 (908)
-.|.+.....+..+.+.+... .++.++.|||.|+..+|+.+.+.|.+ +. .-.|++|-..+.||++-+...|
T Consensus 597 ~~v~Isny~~tldl~e~~~~~------~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRl 670 (776)
T KOG0390|consen 597 KSVLISNYTQTLDLFEQLCRW------RGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRL 670 (776)
T ss_pred EEEEeccHHHHHHHHHHHHhh------cCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceE
Confidence 345556666676666666552 47889999999999999999999854 23 3456677788999999999999
Q ss_pred EeCCCccceeeccccCccccccccccHhhHHHhccccCCCCCcEEEEecChh
Q 002552 634 VDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRVQPGVCYKLYPRI 685 (908)
Q Consensus 634 Id~g~~k~~~yd~~~~~~~l~~~~iS~~~~~QR~GRaGR~~~G~~~~l~~~~ 685 (908)
|-+|..-+.. . -.+++-|+=|-|-.++-..|+|.+..
T Consensus 671 il~D~dWNPa----~-----------d~QAmaR~~RdGQKk~v~iYrLlatG 707 (776)
T KOG0390|consen 671 ILFDPDWNPA----V-----------DQQAMARAWRDGQKKPVYIYRLLATG 707 (776)
T ss_pred EEeCCCCCch----h-----------HHHHHHHhccCCCcceEEEEEeecCC
Confidence 9887665333 1 11444455555555778899998864
No 151
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=98.73 E-value=5.2e-07 Score=103.76 Aligned_cols=113 Identities=16% Similarity=0.267 Sum_probs=93.3
Q ss_pred CCCcEEEecCCHHHHHHHHHHHHhcccCCCCCceEEEeccCCCChHhHHhhhCCCCCCCc--EEEEeccccccccCCCCe
Q 002552 553 GDGAILVFLTGWNDISKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKR--KIVLATNIAESSITIDDV 630 (908)
Q Consensus 553 ~~g~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lH~~l~~~er~~v~~~f~~g~~--kIlvaT~iae~GidIp~v 630 (908)
.+.++|+|..++..++.|...|... .+|..+-+-|..+...|..+.+.|.++.. -.|++|-|..-|+|+-+.
T Consensus 545 qg~rvllFsqs~~mLdilE~fL~~~------~~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTTrvGGLGlNLTgA 618 (923)
T KOG0387|consen 545 QGDRVLLFSQSRQMLDILESFLRRA------KGYSYLRMDGTTPAALRQKLVDRFNEDESIFVFLLTTRVGGLGLNLTGA 618 (923)
T ss_pred CCCEEEEehhHHHHHHHHHHHHHhc------CCceEEEecCCCccchhhHHHHhhcCCCceEEEEEEecccccccccccC
Confidence 3558999999999999998888741 57888999999999999999999987754 367899999999999999
Q ss_pred EEEEeCCCccceeeccccCccccccccccHhhHHHhccccCCCCCcEEEEecChhh
Q 002552 631 VYVVDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRVQPGVCYKLYPRII 686 (908)
Q Consensus 631 ~~VId~g~~k~~~yd~~~~~~~l~~~~iS~~~~~QR~GRaGR~~~G~~~~l~~~~~ 686 (908)
+-||-||.- +||.+. .++.-|+=|-|-.+.=..|||.+...
T Consensus 619 nRVIIfDPd----WNPStD-----------~QAreRawRiGQkkdV~VYRL~t~gT 659 (923)
T KOG0387|consen 619 NRVIIFDPD----WNPSTD-----------NQARERAWRIGQKKDVVVYRLMTAGT 659 (923)
T ss_pred ceEEEECCC----CCCccc-----------hHHHHHHHhhcCccceEEEEEecCCc
Confidence 999987654 444433 37788888889888889999998643
No 152
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=98.70 E-value=9.8e-07 Score=107.61 Aligned_cols=131 Identities=15% Similarity=0.130 Sum_probs=85.5
Q ss_pred HHHHHHHHHhccCCCcEEEecCCHHHHHHHHHHHHhcccCCCCCceEEEeccCCCChHhHHhhhCCCCCCCc-EEEEecc
Q 002552 541 VESTIEYICRHEGDGAILVFLTGWNDISKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKR-KIVLATN 619 (908)
Q Consensus 541 i~~~l~~i~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lH~~l~~~er~~v~~~f~~g~~-kIlvaT~ 619 (908)
+...+..+... .++.+|||+|+.+.++.+++.+...... ..+..++..+.. .+++.|+.+.- .++|+|.
T Consensus 467 ~~~~i~~~~~~-~~~~~lvlF~Sy~~l~~~~~~~~~~~~~------~~v~~q~~~~~~---~~l~~f~~~~~~~~lv~~g 536 (654)
T COG1199 467 LAAYLREILKA-SPGGVLVLFPSYEYLKRVAERLKDERST------LPVLTQGEDERE---ELLEKFKASGEGLILVGGG 536 (654)
T ss_pred HHHHHHHHHhh-cCCCEEEEeccHHHHHHHHHHHhhcCcc------ceeeecCCCcHH---HHHHHHHHhcCCeEEEeec
Confidence 34444445443 4558999999999999999999863211 233456665544 45555555443 9999999
Q ss_pred ccccccCCCC--eEEEEeCCCccceeecc----------ccCc--cccccccccHhhHHHhccccCCC--CCcEEEEe
Q 002552 620 IAESSITIDD--VVYVVDCGKAKETSYDA----------LNKL--ACLLPSWISKASAHQRRGRAGRV--QPGVCYKL 681 (908)
Q Consensus 620 iae~GidIp~--v~~VId~g~~k~~~yd~----------~~~~--~~l~~~~iS~~~~~QR~GRaGR~--~~G~~~~l 681 (908)
.+.+|||+|+ .+.||-.++|-...-|+ ..+. -.....+...-...|-+||.=|. -.|.++.|
T Consensus 537 sf~EGVD~~g~~l~~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivll 614 (654)
T COG1199 537 SFWEGVDFPGDALRLVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVLL 614 (654)
T ss_pred cccCcccCCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEEe
Confidence 9999999998 47888888886433232 1111 11122233455788999999998 33766655
No 153
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=98.65 E-value=1.8e-07 Score=109.98 Aligned_cols=63 Identities=16% Similarity=0.139 Sum_probs=51.2
Q ss_pred HHHHHHHHhCCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHH
Q 002552 288 AEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSE 353 (908)
Q Consensus 288 ~~~i~~i~~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~~ 353 (908)
+.+.+++.+++.+++.|+||+|||.+++++++...... ...+|||+.||++|+.|+.+.+...
T Consensus 7 ~~i~~al~~~~~lliEA~TGtGKTlAYLlpal~~~~~~---~~~rvlIstpT~~Lq~Ql~~~l~~l 69 (636)
T TIGR03117 7 LNCLTSLRQKRIGMLEASTGVGKTLAMIMAALTMLKER---PDQKIAIAVPTLALMGQLWSELERL 69 (636)
T ss_pred HHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHHHHhc---cCceEEEECCcHHHHHHHHHHHHHH
Confidence 44666777899999999999999999999998765421 2468999999999999999765443
No 154
>PRK14873 primosome assembly protein PriA; Provisional
Probab=98.63 E-value=4.2e-07 Score=108.31 Aligned_cols=127 Identities=9% Similarity=0.030 Sum_probs=82.5
Q ss_pred CCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCCEEeEEeec---------cccCCCCC
Q 002552 306 TGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLGETVGYQIRL---------ESKRSAQT 376 (908)
Q Consensus 306 TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~~~~~~~g~~vg~~~~~---------~~~~~~~~ 376 (908)
+|||||..+...+.+.+.. +..+|++.|...|+.|+.+++...++.. ..+.|+-.. ........
T Consensus 169 ~GSGKTevyl~~i~~~l~~-----Gk~vLvLvPEi~lt~q~~~rl~~~f~~~--~v~~lhS~l~~~~R~~~w~~~~~G~~ 241 (665)
T PRK14873 169 PGEDWARRLAAAAAATLRA-----GRGALVVVPDQRDVDRLEAALRALLGAG--DVAVLSAGLGPADRYRRWLAVLRGQA 241 (665)
T ss_pred CCCcHHHHHHHHHHHHHHc-----CCeEEEEecchhhHHHHHHHHHHHcCCC--cEEEECCCCCHHHHHHHHHHHhCCCC
Confidence 5999999888877665432 3468889999999999999999888621 223343211 11123457
Q ss_pred cEEEEchHHHHHHHhcCCCCCcceEEEEechhcc------chhhHHHHHHHHHHCccCCCCcEEEecccCChHHHHh
Q 002552 377 RLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHER------GMNEDFLLIILRDLLPRRPDLRLILMSATINADLFSK 447 (908)
Q Consensus 377 ~Iiv~T~g~Ll~~l~~~~~l~~~~~iIiDEaHeR------~~~~d~ll~~lk~~~~~~~~~qiIlmSAT~~~~~~~~ 447 (908)
+|+|+|-.-+.- -+.++++|||||=|+- +..-+.-... .+.....+..+|+.|||...+.+..
T Consensus 242 ~IViGtRSAvFa------P~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA--~~Ra~~~~~~lvLgSaTPSles~~~ 310 (665)
T PRK14873 242 RVVVGTRSAVFA------PVEDLGLVAIWDDGDDLLAEPRAPYPHAREVA--LLRAHQHGCALLIGGHARTAEAQAL 310 (665)
T ss_pred cEEEEcceeEEe------ccCCCCEEEEEcCCchhhcCCCCCCccHHHHH--HHHHHHcCCcEEEECCCCCHHHHHH
Confidence 899999543321 4689999999999952 2221111111 1112334689999999998876543
No 155
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=98.57 E-value=7.2e-06 Score=91.97 Aligned_cols=247 Identities=13% Similarity=0.148 Sum_probs=148.3
Q ss_pred CCcEEEEchHHHHHHHhc------CC-CCCcceEEEEechhc-cchhhHHHHHHHHHHCccCC-----------------
Q 002552 375 QTRLLFCTTGVLLRQLVE------DP-DLSCVSHLLVDEIHE-RGMNEDFLLIILRDLLPRRP----------------- 429 (908)
Q Consensus 375 ~~~Iiv~T~g~Ll~~l~~------~~-~l~~~~~iIiDEaHe-R~~~~d~ll~~lk~~~~~~~----------------- 429 (908)
.++||||+|=-|-..+.. +. .|+.+.++|||.||- -|-+-+.+..+++.+-....
T Consensus 131 ~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQNW~Hv~~v~~~lN~~P~~~~~~DfsRVR~w~Ldg 210 (442)
T PF06862_consen 131 SSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQNWEHVLHVFEHLNLQPKKSHDTDFSRVRPWYLDG 210 (442)
T ss_pred cCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhhHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHcC
Confidence 689999999767666653 22 699999999999994 23455666777766543221
Q ss_pred ----CCcEEEecccCChHH---HHhhhCCCC-ccccCCccccceeeehhhHHHhhhcccCcccccccccccccccccchh
Q 002552 430 ----DLRLILMSATINADL---FSKYFGNAP-TVHIPGLTFPVTDLFLEDVLEKTRYKMNSKLDSFQGNSRRSRRQDSKK 501 (908)
Q Consensus 430 ----~~qiIlmSAT~~~~~---~~~~f~~~~-~i~v~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (908)
=+|+|++|+...++. |..++.|.. .+.+.....+ ...+..+ .
T Consensus 211 ~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~--~g~i~~v----~------------------------ 260 (442)
T PF06862_consen 211 QAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEA--SGVISQV----V------------------------ 260 (442)
T ss_pred cchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeecccc--ceeeecc----c------------------------
Confidence 169999999998875 444333311 1111000000 0000000 0
Q ss_pred hhHhhhhhcccccccccchhhhhHhhHhhhhhhhhchH-HHHHHHHHHHhccCCCcEEEecCCHHHHHHHHHHHHhcccC
Q 002552 502 DHLTALFEDVDIDSNYKNYRASTRASLEAWSAEQIDLG-LVESTIEYICRHEGDGAILVFLTGWNDISKLLDQIKVNKFL 580 (908)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-li~~~l~~i~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~ 580 (908)
..+.+.|..++...- . .....-+. .+..++-.+.+....+.+|||+|+.-+-..+...|..
T Consensus 261 ~~v~Q~F~r~~~~s~----~----------~~~d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~---- 322 (442)
T PF06862_consen 261 VQVRQVFQRFDCSSP----A----------DDPDARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKK---- 322 (442)
T ss_pred cCCceEEEEecCCCc----c----------hhhhHHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHh----
Confidence 000011111100000 0 00000001 1223333443245567899999999999999999986
Q ss_pred CCCCceEEEeccCCCChHhHHhhhCCCCCCCcEEEEecccc--ccccCCCCeEEEEeCCCccceeeccccCccccccccc
Q 002552 581 GDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIA--ESSITIDDVVYVVDCGKAKETSYDALNKLACLLPSWI 658 (908)
Q Consensus 581 ~~~~~~~v~~lH~~l~~~er~~v~~~f~~g~~kIlvaT~ia--e~GidIp~v~~VId~g~~k~~~yd~~~~~~~l~~~~i 658 (908)
..+..+.+|--.++.+-.++-..|..|+.+||+-|-=+ =+=..|.+|+.||-|++|....|-+
T Consensus 323 ---~~~sF~~i~EYts~~~isRAR~~F~~G~~~iLL~TER~HFfrRy~irGi~~viFY~~P~~p~fY~------------ 387 (442)
T PF06862_consen 323 ---ENISFVQISEYTSNSDISRARSQFFHGRKPILLYTERFHFFRRYRIRGIRHVIFYGPPENPQFYS------------ 387 (442)
T ss_pred ---cCCeEEEecccCCHHHHHHHHHHHHcCCceEEEEEhHHhhhhhceecCCcEEEEECCCCChhHHH------------
Confidence 56667778877788887778888999999999999533 2446789999999999999776532
Q ss_pred cHhhHHHhccccCC----CCCcEEEEecChhhH
Q 002552 659 SKASAHQRRGRAGR----VQPGVCYKLYPRIIH 687 (908)
Q Consensus 659 S~~~~~QR~GRaGR----~~~G~~~~l~~~~~~ 687 (908)
+++...+.... .....|..||++-+.
T Consensus 388 ---El~n~~~~~~~~~~~~~~~~~~~lysk~D~ 417 (442)
T PF06862_consen 388 ---ELLNMLDESSGGEVDAADATVTVLYSKYDA 417 (442)
T ss_pred ---HHHhhhcccccccccccCceEEEEecHhHH
Confidence 33333333222 156899999998544
No 156
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=98.48 E-value=8.9e-05 Score=81.46 Aligned_cols=96 Identities=18% Similarity=0.174 Sum_probs=74.7
Q ss_pred HHHHHHHHHh-----ccCCCcEEEecCCHHHHHHHHHHHHhcccCCCCCceEEEeccCCCChHhHHhhhCCCCCC--CcE
Q 002552 541 VESTIEYICR-----HEGDGAILVFLTGWNDISKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPN--KRK 613 (908)
Q Consensus 541 i~~~l~~i~~-----~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lH~~l~~~er~~v~~~f~~g--~~k 613 (908)
+..+.++|.. ..++.+.|||+.-..-.+.+...+.+ .++..+-+.|..+..+|+...+.|... ..-
T Consensus 474 ~~av~eyi~~~~~l~d~~~~KflVFaHH~~vLd~Iq~~~~~-------r~vg~IRIDGst~s~~R~ll~qsFQ~seev~V 546 (689)
T KOG1000|consen 474 AAAVCEYILENYFLPDAPPRKFLVFAHHQIVLDTIQVEVNK-------RKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRV 546 (689)
T ss_pred cHHHHHHHHhCcccccCCCceEEEEehhHHHHHHHHHHHHH-------cCCCeEEecCCCCchhHHHHHHHhccccceEE
Confidence 3344455544 34567999999999999999999987 456667789999999999998888654 334
Q ss_pred EEEeccccccccCCCCeEEEEeCCCcccee
Q 002552 614 IVLATNIAESSITIDDVVYVVDCGKAKETS 643 (908)
Q Consensus 614 IlvaT~iae~GidIp~v~~VId~g~~k~~~ 643 (908)
-|++-..+..|||+...+.||...++.+.-
T Consensus 547 AvlsItA~gvGLt~tAa~~VVFaEL~wnPg 576 (689)
T KOG1000|consen 547 AVLSITAAGVGLTLTAASVVVFAELHWNPG 576 (689)
T ss_pred EEEEEeecccceeeeccceEEEEEecCCCc
Confidence 567778899999999999999887776443
No 157
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=98.36 E-value=3.1e-06 Score=92.64 Aligned_cols=134 Identities=16% Similarity=0.109 Sum_probs=75.5
Q ss_pred hCCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCC-CCCCEEeEEeec-----c
Q 002552 296 ENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGE-NLGETVGYQIRL-----E 369 (908)
Q Consensus 296 ~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~~~~~-~~g~~vg~~~~~-----~ 369 (908)
..+..+++-++|+|||.++..++..............+||++|. .+..+...++.+.... .. ..+-|.-.. .
T Consensus 24 ~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~-~l~~~W~~E~~~~~~~~~~-~v~~~~~~~~~~~~~ 101 (299)
T PF00176_consen 24 PPRGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPS-SLLSQWKEEIEKWFDPDSL-RVIIYDGDSERRRLS 101 (299)
T ss_dssp TT-EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-T-TTHHHHHHHHHHHSGT-TS--EEEESSSCHHHHTT
T ss_pred CCCCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeecc-chhhhhhhhhccccccccc-ccccccccccccccc
Confidence 45689999999999998777666532211111112248888899 6678888888777633 22 222222111 1
Q ss_pred ccCCCCCcEEEEchHHHH--------HHHhcCCCCCcceEEEEechhcc-chhhHHHHHHHHHHCccCCCCcEEEecccC
Q 002552 370 SKRSAQTRLLFCTTGVLL--------RQLVEDPDLSCVSHLLVDEIHER-GMNEDFLLIILRDLLPRRPDLRLILMSATI 440 (908)
Q Consensus 370 ~~~~~~~~Iiv~T~g~Ll--------~~l~~~~~l~~~~~iIiDEaHeR-~~~~d~ll~~lk~~~~~~~~~qiIlmSAT~ 440 (908)
.......+++++|...+. ..+. . -++++|||||+|.- +..+.....+ ..+ . ....++||||+
T Consensus 102 ~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~---~-~~~~~vIvDEaH~~k~~~s~~~~~l-~~l---~-~~~~~lLSgTP 172 (299)
T PF00176_consen 102 KNQLPKYDVVITTYETLRKARKKKDKEDLK---Q-IKWDRVIVDEAHRLKNKDSKRYKAL-RKL---R-ARYRWLLSGTP 172 (299)
T ss_dssp SSSCCCSSEEEEEHHHHH--TSTHTTHHHH---T-SEEEEEEETTGGGGTTTTSHHHHHH-HCC---C-ECEEEEE-SS-
T ss_pred ccccccceeeeccccccccccccccccccc---c-ccceeEEEecccccccccccccccc-ccc---c-cceEEeecccc
Confidence 223457889999999988 2221 1 35899999999953 3333332222 222 1 45778899997
No 158
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=98.23 E-value=7.2e-05 Score=90.07 Aligned_cols=115 Identities=19% Similarity=0.269 Sum_probs=88.2
Q ss_pred CCcEEEecCCHHHHHHHHHHHHhcccCCCCCceEEEeccCCCChHhHHhhhCCCCCC-CcEE-EEeccccccccCCCCeE
Q 002552 554 DGAILVFLTGWNDISKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPN-KRKI-VLATNIAESSITIDDVV 631 (908)
Q Consensus 554 ~g~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lH~~l~~~er~~v~~~f~~g-~~kI-lvaT~iae~GidIp~v~ 631 (908)
..++||||.=+..++-+.+.|.+... ..+.-.-+-|+.++.+|.++.++|.++ .+.| +++|-|..-|+|+-+.+
T Consensus 1340 qHRiLIFcQlK~mlDlVekDL~k~~m----psVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGAD 1415 (1549)
T KOG0392|consen 1340 QHRILIFCQLKSMLDLVEKDLFKKYM----PSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGAD 1415 (1549)
T ss_pred cceeEEeeeHHHHHHHHHHHHhhhhc----CceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCc
Confidence 35899999999988888877765433 445566799999999999999999998 6665 57788999999999999
Q ss_pred EEEeCCCccceeeccccCccccccccccHhhHHHhccccCCCCCcEEEEecChhhH
Q 002552 632 YVVDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRVQPGVCYKLYPRIIH 687 (908)
Q Consensus 632 ~VId~g~~k~~~yd~~~~~~~l~~~~iS~~~~~QR~GRaGR~~~G~~~~l~~~~~~ 687 (908)
.||.. +-.+||-+.+ ++.-|+-|.|-.+-=.+|||+++...
T Consensus 1416 TVVFv----EHDWNPMrDL-----------QAMDRAHRIGQKrvVNVyRlItrGTL 1456 (1549)
T KOG0392|consen 1416 TVVFV----EHDWNPMRDL-----------QAMDRAHRIGQKRVVNVYRLITRGTL 1456 (1549)
T ss_pred eEEEE----ecCCCchhhH-----------HHHHHHHhhcCceeeeeeeehhcccH
Confidence 99963 2234444432 55666666676666779999998644
No 159
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.11 E-value=2.8e-05 Score=85.93 Aligned_cols=111 Identities=14% Similarity=0.192 Sum_probs=73.6
Q ss_pred CCcEEEecCCHHHHHHHHHHHHhcccCCCCCceEEEeccCCCChHhHHhhhCCCCCCCcEEEEeccccc--cccCCCCeE
Q 002552 554 DGAILVFLTGWNDISKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAE--SSITIDDVV 631 (908)
Q Consensus 554 ~g~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lH~~l~~~er~~v~~~f~~g~~kIlvaT~iae--~GidIp~v~ 631 (908)
...|||+.|+.-+-..+...+.+... .+..+.=++...+-.| +=+.|-.|..+||+-|-=+- +--+|.+|+
T Consensus 552 ~s~~LiyIPSYfDFVRvRNy~K~e~i-----~F~~i~EYssk~~vsR--AR~lF~qgr~~vlLyTER~hffrR~~ikGVk 624 (698)
T KOG2340|consen 552 ESGILIYIPSYFDFVRVRNYMKKEEI-----SFVMINEYSSKSKVSR--ARELFFQGRKSVLLYTERAHFFRRYHIKGVK 624 (698)
T ss_pred cCceEEEecchhhHHHHHHHhhhhhc-----chHHHhhhhhHhhhhH--HHHHHHhcCceEEEEehhhhhhhhheeccee
Confidence 34699999999999888888876321 1111111222222222 23346678899999986443 567899999
Q ss_pred EEEeCCCccceeeccccCccccccccccHhhHHHhccccCCC-----CCcEEEEecChhh
Q 002552 632 YVVDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRV-----QPGVCYKLYPRII 686 (908)
Q Consensus 632 ~VId~g~~k~~~yd~~~~~~~l~~~~iS~~~~~QR~GRaGR~-----~~G~~~~l~~~~~ 686 (908)
-||.|.+|....|- .+.+.+.+|+--. ..-.|-.||++-+
T Consensus 625 ~vVfYqpP~~P~FY---------------sEiinm~~k~~~~gn~d~d~~t~~ilytKyD 669 (698)
T KOG2340|consen 625 NVVFYQPPNNPHFY---------------SEIINMSDKTTSQGNTDLDIFTVRILYTKYD 669 (698)
T ss_pred eEEEecCCCCcHHH---------------HHHHhhhhhhhccCCccccceEEEEEeechh
Confidence 99999999977642 3677777776322 2246888998743
No 160
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.11 E-value=1.5e-05 Score=96.72 Aligned_cols=67 Identities=16% Similarity=0.120 Sum_probs=52.1
Q ss_pred CCcEEEEchHHHHHHHhcCC-CCCcceEEEEechhccchhhHHHHHHHHHHCccCCCCcEEEecccCCh
Q 002552 375 QTRLLFCTTGVLLRQLVEDP-DLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILMSATINA 442 (908)
Q Consensus 375 ~~~Iiv~T~g~Ll~~l~~~~-~l~~~~~iIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiIlmSAT~~~ 442 (908)
...|+++||.+|..-|..+. .++.++.||||||| |...+--..-+++.....+++.-|.+|||.+..
T Consensus 7 ~ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ah-r~~~~~~eaFI~rlyr~~n~~gfIkafSdsP~~ 74 (814)
T TIGR00596 7 EGGIFSITSRILVVDLLTGIIPPELITGILVLRAD-RIIESSQEAFILRLYRQKNKTGFIKAFSDNPEA 74 (814)
T ss_pred cCCEEEEechhhHhHHhcCCCCHHHccEEEEeecc-cccccccHHHHHHHHHHhCCCcceEEecCCCcc
Confidence 46799999999988777766 89999999999999 654444444445555566778889999999854
No 161
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.08 E-value=7.7e-05 Score=93.22 Aligned_cols=135 Identities=14% Similarity=0.074 Sum_probs=83.3
Q ss_pred CeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCCEEeEEeecc-ccCC-CC
Q 002552 298 QVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLGETVGYQIRLE-SKRS-AQ 375 (908)
Q Consensus 298 ~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~~~~~~~g~~vg~~~~~~-~~~~-~~ 375 (908)
+.-+|.=-||||||.....+ ...+... ...+.|++++-|+.|-.|+.+.+...-....-..---..... .... ..
T Consensus 274 ~~G~IWHtqGSGKTlTm~~~-A~~l~~~--~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~~~~s~~~Lk~~l~~~~ 350 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKL-ARLLLEL--PKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDPKAESTSELKELLEDGK 350 (962)
T ss_pred CceEEEeecCCchHHHHHHH-HHHHHhc--cCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcccccCHHHHHHHHhcCC
Confidence 45899999999999543322 2222222 346789999999999999998887653322110000000000 0011 24
Q ss_pred CcEEEEchHHHHHHHhcCC--C-CCcceEEEEechhccchhhHHHHHHHHHHCccCCCCcEEEecccC
Q 002552 376 TRLLFCTTGVLLRQLVEDP--D-LSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILMSATI 440 (908)
Q Consensus 376 ~~Iiv~T~g~Ll~~l~~~~--~-l~~~~~iIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiIlmSAT~ 440 (908)
..|+|+|-+.|-..+.... . -.+==+||+|||| |+-+. .+-..++..+ ++...+++|.|+
T Consensus 351 ~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaH-RSQ~G-~~~~~~~~~~---~~a~~~gFTGTP 413 (962)
T COG0610 351 GKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAH-RSQYG-ELAKLLKKAL---KKAIFIGFTGTP 413 (962)
T ss_pred CcEEEEEecccchhhhcccccccCCCcEEEEEechh-hcccc-HHHHHHHHHh---ccceEEEeeCCc
Confidence 5899999999888776541 1 2223478999999 86544 3444444433 347899999997
No 162
>PF13245 AAA_19: Part of AAA domain
Probab=98.01 E-value=1.8e-05 Score=67.12 Aligned_cols=57 Identities=30% Similarity=0.373 Sum_probs=44.8
Q ss_pred HHHhCCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHH
Q 002552 293 AVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARV 350 (908)
Q Consensus 293 ~i~~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv 350 (908)
++..++.++|.||.|||||+.+...+.+........ +.+|+|+.|++.++.++.+++
T Consensus 6 al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~-~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 6 ALAGSPLFVVQGPPGTGKTTTLAARIAELLAARADP-GKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHhhCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCC-CCeEEEECCCHHHHHHHHHHH
Confidence 444477788899999999988887777665332233 568999999999999999888
No 163
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.00 E-value=2.8e-05 Score=79.43 Aligned_cols=120 Identities=24% Similarity=0.279 Sum_probs=70.5
Q ss_pred hHHHHHHHHHHHhC--CeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCCE
Q 002552 284 FKMKAEFLKAVAEN--QVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLGET 361 (908)
Q Consensus 284 ~~~Q~~~i~~i~~~--~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~~~~~~~g~~ 361 (908)
.+-|.+++..+..+ +.++|+|+.|+|||+.+-. +.+.+... +.+|+++.||..++..+.+.. +.
T Consensus 3 ~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l~~-~~~~~~~~----g~~v~~~apT~~Aa~~L~~~~----~~----- 68 (196)
T PF13604_consen 3 NEEQREAVRAILTSGDRVSVLQGPAGTGKTTLLKA-LAEALEAA----GKRVIGLAPTNKAAKELREKT----GI----- 68 (196)
T ss_dssp -HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHHHH-HHHHHHHT----T--EEEEESSHHHHHHHHHHH----TS-----
T ss_pred CHHHHHHHHHHHhcCCeEEEEEECCCCCHHHHHHH-HHHHHHhC----CCeEEEECCcHHHHHHHHHhh----Cc-----
Confidence 46799999998654 4789999999999986543 44433321 358999999999998876652 11
Q ss_pred EeEEeeccccCCCCCcEEEEchHHHHHHHhcCC-----CCCcceEEEEechhccchhhHHHHHHHHHHCccCCCCcEEEe
Q 002552 362 VGYQIRLESKRSAQTRLLFCTTGVLLRQLVEDP-----DLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILM 436 (908)
Q Consensus 362 vg~~~~~~~~~~~~~~Iiv~T~g~Ll~~l~~~~-----~l~~~~~iIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiIlm 436 (908)
-..|-..++....... .+...++|||||+-. ++...+..+++.+.. ...|+|++
T Consensus 69 -----------------~a~Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasm--v~~~~~~~ll~~~~~--~~~klilv 127 (196)
T PF13604_consen 69 -----------------EAQTIHSFLYRIPNGDDEGRPELPKKDVLIVDEASM--VDSRQLARLLRLAKK--SGAKLILV 127 (196)
T ss_dssp ------------------EEEHHHHTTEECCEECCSSCC-TSTSEEEESSGGG---BHHHHHHHHHHS-T---T-EEEEE
T ss_pred -----------------chhhHHHHHhcCCcccccccccCCcccEEEEecccc--cCHHHHHHHHHHHHh--cCCEEEEE
Confidence 1122222222111100 156778999999984 565555555554433 34677776
Q ss_pred cc
Q 002552 437 SA 438 (908)
Q Consensus 437 SA 438 (908)
-=
T Consensus 128 GD 129 (196)
T PF13604_consen 128 GD 129 (196)
T ss_dssp E-
T ss_pred CC
Confidence 43
No 164
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=97.99 E-value=0.00018 Score=83.47 Aligned_cols=113 Identities=18% Similarity=0.232 Sum_probs=88.0
Q ss_pred CCCcEEEecCCHHHHHHHHHHHHhcccCCCCCceEEEeccCCCChHhHHhhhCCCCCCC--cEEEEeccccccccCCCCe
Q 002552 553 GDGAILVFLTGWNDISKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNK--RKIVLATNIAESSITIDDV 630 (908)
Q Consensus 553 ~~g~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lH~~l~~~er~~v~~~f~~g~--~kIlvaT~iae~GidIp~v 630 (908)
.+.+||||-.=-...+-|...|.. .++..+-|-|..+-.+|+.+++.|-..+ .-.|++|-...-|||+-..
T Consensus 776 ~G~RVLiFSQFTqmLDILE~~L~~-------l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~A 848 (941)
T KOG0389|consen 776 KGDRVLIFSQFTQMLDILEVVLDT-------LGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCA 848 (941)
T ss_pred cCCEEEEeeHHHHHHHHHHHHHHh-------cCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceeccccc
Confidence 357899997644444445555554 5778888999999999999999997653 4578999999999999999
Q ss_pred EEEEeCCCccceeeccccCccccccccccHhhHHHhccccCCCCCcEEEEecChhhH
Q 002552 631 VYVVDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRVQPGVCYKLYPRIIH 687 (908)
Q Consensus 631 ~~VId~g~~k~~~yd~~~~~~~l~~~~iS~~~~~QR~GRaGR~~~G~~~~l~~~~~~ 687 (908)
+.||-+|.- |||.... ++.-|+-|.|-++|=..|+|+++..-
T Consensus 849 n~VIihD~d----FNP~dD~-----------QAEDRcHRvGQtkpVtV~rLItk~TI 890 (941)
T KOG0389|consen 849 NTVIIHDID----FNPYDDK-----------QAEDRCHRVGQTKPVTVYRLITKSTI 890 (941)
T ss_pred ceEEEeecC----CCCcccc-----------hhHHHHHhhCCcceeEEEEEEecCcH
Confidence 999977654 4554432 67778888888899999999998643
No 165
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.93 E-value=0.00016 Score=85.73 Aligned_cols=139 Identities=20% Similarity=0.238 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHhCCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCCEEeE
Q 002552 285 KMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLGETVGY 364 (908)
Q Consensus 285 ~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~~~~~~~g~~vg~ 364 (908)
..|+.++..++.++.++|+|+.|+||||.+...+.............+|++++||--+|..+.+.+..... .+...
T Consensus 148 ~~Qk~A~~~al~~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~~~~-~l~~~--- 223 (586)
T TIGR01447 148 NWQKVAVALALKSNFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRKAVK-NLAAA--- 223 (586)
T ss_pred HHHHHHHHHHhhCCeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHhhhc-ccccc---
Confidence 68999999999999999999999999987765543321111111135799999999999888776644321 11100
Q ss_pred EeeccccCCCCCcEEEEchHHHHHHHhc-------CCCCCcceEEEEechhccchhhHHHHHHHHHHCccCCCCcEEEec
Q 002552 365 QIRLESKRSAQTRLLFCTTGVLLRQLVE-------DPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILMS 437 (908)
Q Consensus 365 ~~~~~~~~~~~~~Iiv~T~g~Ll~~l~~-------~~~l~~~~~iIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiIlmS 437 (908)
........+...|-.+|+..... ......+++|||||+= |++...+..+++.+ .+..|+|++-
T Consensus 224 -----~~~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaS--Mvd~~l~~~ll~al---~~~~rlIlvG 293 (586)
T TIGR01447 224 -----EALIAALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEAS--MVDLPLMAKLLKAL---PPNTKLILLG 293 (586)
T ss_pred -----hhhhhccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccc--cCCHHHHHHHHHhc---CCCCEEEEEC
Confidence 00000111223444444432211 1123468999999996 37777666666543 4567888774
No 166
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.89 E-value=4.8e-05 Score=77.46 Aligned_cols=127 Identities=26% Similarity=0.356 Sum_probs=78.9
Q ss_pred CeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCCEEeEEeeccccCCCCCc
Q 002552 298 QVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLGETVGYQIRLESKRSAQTR 377 (908)
Q Consensus 298 ~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~~~~~~~g~~vg~~~~~~~~~~~~~~ 377 (908)
++++++||||+||||.+..+....... +....++++-..|+.|.+.-+.+++.++.++ +..+...
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~---~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~-----~~~~~~~------- 66 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLK---GKKVALISADTYRIGAVEQLKTYAEILGVPF-----YVARTES------- 66 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHT---T--EEEEEESTSSTHHHHHHHHHHHHHTEEE-----EESSTTS-------
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhc---cccceeecCCCCCccHHHHHHHHHHHhcccc-----chhhcch-------
Confidence 478999999999999988877665433 4456677777889999888888888877431 1111000
Q ss_pred EEEEchHHHH-HHHhcCCCCCcceEEEEechhccchhhHHHHHHHHHHC-ccCCCCcEEEecccCChHHH
Q 002552 378 LLFCTTGVLL-RQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLL-PRRPDLRLILMSATINADLF 445 (908)
Q Consensus 378 Iiv~T~g~Ll-~~l~~~~~l~~~~~iIiDEaHeR~~~~d~ll~~lk~~~-~~~~~~qiIlmSAT~~~~~~ 445 (908)
.|..++ +.+.. ..-+++++|+||-+. |.....-++.-++.+. ...+.--++.||||...+.+
T Consensus 67 ----~~~~~~~~~l~~-~~~~~~D~vlIDT~G-r~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~ 130 (196)
T PF00448_consen 67 ----DPAEIAREALEK-FRKKGYDLVLIDTAG-RSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDL 130 (196)
T ss_dssp ----CHHHHHHHHHHH-HHHTTSSEEEEEE-S-SSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHH
T ss_pred ----hhHHHHHHHHHH-HhhcCCCEEEEecCC-cchhhHHHHHHHHHHhhhcCCccceEEEecccChHHH
Confidence 233333 23321 122468999999998 5544333333333333 33566778899999976653
No 167
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=97.89 E-value=5.8e-06 Score=98.02 Aligned_cols=154 Identities=16% Similarity=0.138 Sum_probs=100.3
Q ss_pred CCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCCEEeEEeec---cccCC
Q 002552 297 NQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLGETVGYQIRL---ESKRS 373 (908)
Q Consensus 297 ~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~~~~~~~g~~vg~~~~~---~~~~~ 373 (908)
+.++++-+|||||||..+.+.+..... ..+.++++++.|..+|+..-.++..+..... |..+.-.... +-..-
T Consensus 943 d~~~~~g~ptgsgkt~~ae~a~~~~~~---~~p~~kvvyIap~kalvker~~Dw~~r~~~~-g~k~ie~tgd~~pd~~~v 1018 (1230)
T KOG0952|consen 943 DLNFLLGAPTGSGKTVVAELAIFRALS---YYPGSKVVYIAPDKALVKERSDDWSKRDELP-GIKVIELTGDVTPDVKAV 1018 (1230)
T ss_pred chhhhhcCCccCcchhHHHHHHHHHhc---cCCCccEEEEcCCchhhcccccchhhhcccC-CceeEeccCccCCChhhe
Confidence 356788999999999988887765543 2345799999999999998888776655444 4444322111 11122
Q ss_pred CCCcEEEEchHHHHHHHhc---CCCCCcceEEEEechhccchhhHHHHHH----HHHH-CccCCCCcEEEec-ccCChHH
Q 002552 374 AQTRLLFCTTGVLLRQLVE---DPDLSCVSHLLVDEIHERGMNEDFLLII----LRDL-LPRRPDLRLILMS-ATINADL 444 (908)
Q Consensus 374 ~~~~Iiv~T~g~Ll~~l~~---~~~l~~~~~iIiDEaHeR~~~~d~ll~~----lk~~-~~~~~~~qiIlmS-AT~~~~~ 444 (908)
..++|+++||+......++ ...+.+++.+|+||.|.-+-+-.-.+.+ ...+ ....+.+|++++| |-.++..
T Consensus 1019 ~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~~rgPVle~ivsr~n~~s~~t~~~vr~~glsta~~na~d 1098 (1230)
T KOG0952|consen 1019 READIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGEDRGPVLEVIVSRMNYISSQTEEPVRYLGLSTALANAND 1098 (1230)
T ss_pred ecCceEEcccccccCccccccchhhhccccceeecccccccCCCcceEEEEeeccccCccccCcchhhhhHhhhhhccHH
Confidence 4688999999987665543 3368899999999999533221111111 1110 1123456777776 4448889
Q ss_pred HHhhhCCCCc
Q 002552 445 FSKYFGNAPT 454 (908)
Q Consensus 445 ~~~~f~~~~~ 454 (908)
+++|++-.+.
T Consensus 1099 la~wl~~~~~ 1108 (1230)
T KOG0952|consen 1099 LADWLNIKDM 1108 (1230)
T ss_pred HHHHhCCCCc
Confidence 9999986554
No 168
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.85 E-value=3.4e-05 Score=73.20 Aligned_cols=119 Identities=24% Similarity=0.321 Sum_probs=65.7
Q ss_pred HhCCeEEEEecCCCCccchHHHHHHHHHHhc-cCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCCEEeEEeeccccCC
Q 002552 295 AENQVLVVSGETGCGKTTQLPQFILEEELSS-LRGADCNIICTQPRRISAISVAARVSSERGENLGETVGYQIRLESKRS 373 (908)
Q Consensus 295 ~~~~~vii~a~TGSGKTt~~~~~il~~~~~~-~~~~~~~ilv~~P~r~la~qi~~rv~~~~~~~~g~~vg~~~~~~~~~~ 373 (908)
.+++.++|.|++|+|||+.+-.++.+..... .......+.+..|...-...+++.+...++.....
T Consensus 2 ~~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~------------- 68 (131)
T PF13401_consen 2 QSQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS------------- 68 (131)
T ss_dssp -----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS-------------
T ss_pred CCCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc-------------
Confidence 3567899999999999988887776543211 01122344555565555667777777777654322
Q ss_pred CCCcEEEEchHH----HHHHHhcCCCCCcceEEEEechhccchhhHHHHHHHHHHCccCCCCcEEEeccc
Q 002552 374 AQTRLLFCTTGV----LLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILMSAT 439 (908)
Q Consensus 374 ~~~~Iiv~T~g~----Ll~~l~~~~~l~~~~~iIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiIlmSAT 439 (908)
-.|... +.+.+... ...+|||||+|+.. . +-.+..++.+.. ...+++|+....
T Consensus 69 ------~~~~~~l~~~~~~~l~~~----~~~~lviDe~~~l~-~-~~~l~~l~~l~~-~~~~~vvl~G~~ 125 (131)
T PF13401_consen 69 ------RQTSDELRSLLIDALDRR----RVVLLVIDEADHLF-S-DEFLEFLRSLLN-ESNIKVVLVGTP 125 (131)
T ss_dssp ------TS-HHHHHHHHHHHHHHC----TEEEEEEETTHHHH-T-HHHHHHHHHHTC-SCBEEEEEEESS
T ss_pred ------cCCHHHHHHHHHHHHHhc----CCeEEEEeChHhcC-C-HHHHHHHHHHHh-CCCCeEEEEECh
Confidence 112333 33333322 22799999999631 4 444445566655 566777766543
No 169
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.77 E-value=0.0002 Score=80.16 Aligned_cols=131 Identities=21% Similarity=0.220 Sum_probs=77.7
Q ss_pred CCeEEEEecCCCCccchHHHHHHHHHHhc-cCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCCEEeEEeeccccCCCC
Q 002552 297 NQVLVVSGETGCGKTTQLPQFILEEELSS-LRGADCNIICTQPRRISAISVAARVSSERGENLGETVGYQIRLESKRSAQ 375 (908)
Q Consensus 297 ~~~vii~a~TGSGKTt~~~~~il~~~~~~-~~~~~~~ilv~~P~r~la~qi~~rv~~~~~~~~g~~vg~~~~~~~~~~~~ 375 (908)
.++++++||||+||||.+..+........ ..+....++.+=+.|..|...-+..++.++.++
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv----------------- 236 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPV----------------- 236 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcce-----------------
Confidence 46899999999999998877665433221 123333444455668877766666655444321
Q ss_pred CcEEEEchHHHHHHHhcCCCCCcceEEEEechhccchhhHHHHHHHHHHCc-cCCC-CcEEEecccCChHHHHhhhC
Q 002552 376 TRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLP-RRPD-LRLILMSATINADLFSKYFG 450 (908)
Q Consensus 376 ~~Iiv~T~g~Ll~~l~~~~~l~~~~~iIiDEaHeR~~~~d~ll~~lk~~~~-~~~~-~qiIlmSAT~~~~~~~~~f~ 450 (908)
.++-++..+...+. .+.++++||||++. |.......+.-++.++. ..++ -.++.+|||.....+.+.|.
T Consensus 237 --~~~~~~~~l~~~L~---~~~~~DlVLIDTaG-r~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~ 307 (388)
T PRK12723 237 --KAIESFKDLKEEIT---QSKDFDLVLVDTIG-KSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIFH 307 (388)
T ss_pred --EeeCcHHHHHHHHH---HhCCCCEEEEcCCC-CCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHH
Confidence 11113444544443 24689999999999 65432222333333333 3334 46788999998776655543
No 170
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.75 E-value=0.00017 Score=73.16 Aligned_cols=57 Identities=30% Similarity=0.306 Sum_probs=41.5
Q ss_pred CchHHHHHHHHHHHhCCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHH
Q 002552 282 PAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRI 341 (908)
Q Consensus 282 pi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~ 341 (908)
|.+..|..+++++.+.+.+++.||.|||||+.+....++.+.. +...+|+++-|..+
T Consensus 4 p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~---g~~~kiii~Rp~v~ 60 (205)
T PF02562_consen 4 PKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKE---GEYDKIIITRPPVE 60 (205)
T ss_dssp --SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHT---TS-SEEEEEE-S--
T ss_pred CCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHh---CCCcEEEEEecCCC
Confidence 6778999999999999999999999999998888888877653 44568899888654
No 171
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.72 E-value=0.00022 Score=84.58 Aligned_cols=139 Identities=17% Similarity=0.227 Sum_probs=85.3
Q ss_pred hHHHHHHHHHHHhCCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCCEEe
Q 002552 284 FKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLGETVG 363 (908)
Q Consensus 284 ~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~~~~~~~g~~vg 363 (908)
...|++++.....++.++|+|++|+||||.+...+... .....+...+|+++.||.-+|..+.+.+..... .++.
T Consensus 154 ~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v~~ll~~l-~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~-~~~~--- 228 (615)
T PRK10875 154 VDWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAAL-IQLADGERCRIRLAAPTGKAAARLTESLGKALR-QLPL--- 228 (615)
T ss_pred CHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHH-HHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhh-cccc---
Confidence 36899999999999999999999999998776554432 221222346899999999999888877654321 1110
Q ss_pred EEeeccccCCCCCcEEEEchHHHHHHHhc------C-CCCCcceEEEEechhccchhhHHHHHHHHHHCccCCCCcEEEe
Q 002552 364 YQIRLESKRSAQTRLLFCTTGVLLRQLVE------D-PDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILM 436 (908)
Q Consensus 364 ~~~~~~~~~~~~~~Iiv~T~g~Ll~~l~~------~-~~l~~~~~iIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiIlm 436 (908)
..........-..|-.+|+...-. + ...-.+++|||||+-. ++...+..+++. ..+..|+|++
T Consensus 229 -----~~~~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSM--vd~~lm~~ll~a---l~~~~rlIlv 298 (615)
T PRK10875 229 -----TDEQKKRIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASM--VDLPMMARLIDA---LPPHARVIFL 298 (615)
T ss_pred -----chhhhhcCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhc--ccHHHHHHHHHh---cccCCEEEEe
Confidence 000000001112333333322111 1 1234578999999973 677666666664 3466788887
Q ss_pred c
Q 002552 437 S 437 (908)
Q Consensus 437 S 437 (908)
-
T Consensus 299 G 299 (615)
T PRK10875 299 G 299 (615)
T ss_pred c
Confidence 5
No 172
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=97.63 E-value=0.0067 Score=67.04 Aligned_cols=123 Identities=13% Similarity=0.151 Sum_probs=80.8
Q ss_pred HHHHHHHH---HhccCCCcEEEecCCHHHHHHHHHHHHhcccCCCCCceEEEeccCCCChHhHHhhhCCCCCC--CcEEE
Q 002552 541 VESTIEYI---CRHEGDGAILVFLTGWNDISKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPN--KRKIV 615 (908)
Q Consensus 541 i~~~l~~i---~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lH~~l~~~er~~v~~~f~~g--~~kIl 615 (908)
+.++++.| .+....-+.|||-.--...+-+.-.|.+ .++.++-|-|+|++..|...++.|++. .+-.|
T Consensus 622 IEAL~EEl~~l~~rd~t~KsIVFSQFTSmLDLi~~rL~k-------aGfscVkL~GsMs~~ardatik~F~nd~~c~vfL 694 (791)
T KOG1002|consen 622 IEALVEELYFLRERDRTAKSIVFSQFTSMLDLIEWRLGK-------AGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFL 694 (791)
T ss_pred HHHHHHHHHHHHHcccchhhhhHHHHHHHHHHHHHHhhc-------cCceEEEeccCCChHHHHHHHHHhccCCCeEEEE
Confidence 44444443 3333445778887655555555555555 688899999999999999999999875 33445
Q ss_pred EeccccccccCCCCeEEEEeCCCccceeeccccCccccccccccHhhHHHhccccCCCCCcEEEEecChh
Q 002552 616 LATNIAESSITIDDVVYVVDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRVQPGVCYKLYPRI 685 (908)
Q Consensus 616 vaT~iae~GidIp~v~~VId~g~~k~~~yd~~~~~~~l~~~~iS~~~~~QR~GRaGR~~~G~~~~l~~~~ 685 (908)
++--...--+++-....|...|.= +||...+ ++.-|+-|.|..+|=..++|+-+.
T Consensus 695 vSLkAGGVALNLteASqVFmmDPW----WNpaVe~-----------Qa~DRiHRIGQ~rPvkvvrf~iEn 749 (791)
T KOG1002|consen 695 VSLKAGGVALNLTEASQVFMMDPW----WNPAVEW-----------QAQDRIHRIGQYRPVKVVRFCIEN 749 (791)
T ss_pred EEeccCceEeeechhceeEeeccc----ccHHHHh-----------hhhhhHHhhcCccceeEEEeehhc
Confidence 555555566677777777754322 3332221 345567777778898888888664
No 173
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=97.62 E-value=0.00017 Score=81.79 Aligned_cols=64 Identities=17% Similarity=0.310 Sum_probs=52.8
Q ss_pred chHHHHHHHHHHHhC-CeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHH
Q 002552 283 AFKMKAEFLKAVAEN-QVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVS 351 (908)
Q Consensus 283 i~~~Q~~~i~~i~~~-~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~ 351 (908)
+.+.|.+++....+. ...+|.||+|+|||+.+...|.+.... +.+|||..||.+++..+.+|+.
T Consensus 186 ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~-----~k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 186 LNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQ-----KKRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred ccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHc-----CCeEEEEcCchHHHHHHHHHhc
Confidence 346789999998887 578889999999998888877776543 4589999999999999988754
No 174
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=97.60 E-value=0.00028 Score=74.75 Aligned_cols=127 Identities=17% Similarity=0.085 Sum_probs=78.9
Q ss_pred HhhcCCCchHHHHHHHHHHHhCCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhC
Q 002552 276 SFREKLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERG 355 (908)
Q Consensus 276 ~~r~~lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~~~~ 355 (908)
..-..+.++..|--.+=++.+|+ |+...||=|||+.+.++..-..+. |. .|=|+....-||..=++.+...+.
T Consensus 71 ~r~~g~~p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL~---G~--~V~vvT~NdyLA~RD~~~~~~~y~ 143 (266)
T PF07517_consen 71 RRTLGLRPYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNALQ---GK--GVHVVTSNDYLAKRDAEEMRPFYE 143 (266)
T ss_dssp HHHTS----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHTT---SS---EEEEESSHHHHHHHHHHHHHHHH
T ss_pred HHHcCCcccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHHh---cC--CcEEEeccHHHhhccHHHHHHHHH
Confidence 33445667777777776666777 899999999998887776655542 33 344444667788776666655443
Q ss_pred CCCCCEEeEEeeccccC----CCCCcEEEEchHHHHH-HHhc----CC---CCCcceEEEEechhcc
Q 002552 356 ENLGETVGYQIRLESKR----SAQTRLLFCTTGVLLR-QLVE----DP---DLSCVSHLLVDEIHER 410 (908)
Q Consensus 356 ~~~g~~vg~~~~~~~~~----~~~~~Iiv~T~g~Ll~-~l~~----~~---~l~~~~~iIiDEaHeR 410 (908)
.+|.+||+........ .-.++|+|+|..-|.- .|+. +. ....+.++||||||..
T Consensus 144 -~LGlsv~~~~~~~~~~~r~~~Y~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~ 209 (266)
T PF07517_consen 144 -FLGLSVGIITSDMSSEERREAYAADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSI 209 (266)
T ss_dssp -HTT--EEEEETTTEHHHHHHHHHSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHH
T ss_pred -HhhhccccCccccCHHHHHHHHhCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceE
Confidence 5677788765543211 1147899999986543 3332 22 2578999999999953
No 175
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.60 E-value=0.0014 Score=72.27 Aligned_cols=130 Identities=22% Similarity=0.263 Sum_probs=90.3
Q ss_pred hCCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCCEEeEEeeccccCCCC
Q 002552 296 ENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLGETVGYQIRLESKRSAQ 375 (908)
Q Consensus 296 ~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~~~~~~~g~~vg~~~~~~~~~~~~ 375 (908)
++++++++||||.||||.+........+.. ......+|-+=-.|+-|...-+..++.++.++
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~-~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~----------------- 263 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLK-KKKKVAIITTDTYRIGAVEQLKTYADIMGVPL----------------- 263 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhc-cCcceEEEEeccchhhHHHHHHHHHHHhCCce-----------------
Confidence 378999999999999988877665554221 22233344445678888887788888877542
Q ss_pred CcEEEEchHHHHHHHhcCCCCCcceEEEEechhccchhhHHHHHHHHHHCccCCC-CcEEEecccCChHHHHhhh
Q 002552 376 TRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPD-LRLILMSATINADLFSKYF 449 (908)
Q Consensus 376 ~~Iiv~T~g~Ll~~l~~~~~l~~~~~iIiDEaHeR~~~~d~ll~~lk~~~~~~~~-~qiIlmSAT~~~~~~~~~f 449 (908)
.++-+|.-|...+. .|.++++|.||=+- |+........-++.+.....+ --.+.+|||...+.+.+-+
T Consensus 264 --~vv~~~~el~~ai~---~l~~~d~ILVDTaG-rs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei~ 332 (407)
T COG1419 264 --EVVYSPKELAEAIE---ALRDCDVILVDTAG-RSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDLKEII 332 (407)
T ss_pred --EEecCHHHHHHHHH---HhhcCCEEEEeCCC-CCccCHHHHHHHHHHHhccccceEEEEEecCcchHHHHHHH
Confidence 44556766766664 57889999999999 776666666666666654444 4567899999777655444
No 176
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.60 E-value=0.0005 Score=76.41 Aligned_cols=127 Identities=23% Similarity=0.224 Sum_probs=77.7
Q ss_pred HHhCCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEc-ccHHHHHHHHHHHHHHhCCCCCCEEeEEeeccccC
Q 002552 294 VAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQ-PRRISAISVAARVSSERGENLGETVGYQIRLESKR 372 (908)
Q Consensus 294 i~~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~-P~r~la~qi~~rv~~~~~~~~g~~vg~~~~~~~~~ 372 (908)
+..+.+++++||||+||||.+..+........ +.....+++. ..|..+.+..+.+++.++..+
T Consensus 134 ~~~g~ii~lvGptGvGKTTtiakLA~~~~~~~--G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~-------------- 197 (374)
T PRK14722 134 MERGGVFALMGPTGVGKTTTTAKLAARCVMRF--GASKVALLTTDSYRIGGHEQLRIFGKILGVPV-------------- 197 (374)
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHHhc--CCCeEEEEecccccccHHHHHHHHHHHcCCce--------------
Confidence 44688999999999999998887766544321 2112233433 446666666666666554321
Q ss_pred CCCCcEEEEchHHHHHHHhcCCCCCcceEEEEechhccchhhHHHHHHHHHHCc-cCCCCcEEEecccCChHHH
Q 002552 373 SAQTRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLP-RRPDLRLILMSATINADLF 445 (908)
Q Consensus 373 ~~~~~Iiv~T~g~Ll~~l~~~~~l~~~~~iIiDEaHeR~~~~d~ll~~lk~~~~-~~~~~qiIlmSAT~~~~~~ 445 (908)
..+.+++-+...+. .+.+.++|+||++- |....+.+...+..+.. ..+.-.++++|||...+.+
T Consensus 198 -----~~~~~~~~l~~~l~---~l~~~DlVLIDTaG-~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l 262 (374)
T PRK14722 198 -----HAVKDGGDLQLALA---ELRNKHMVLIDTIG-MSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTL 262 (374)
T ss_pred -----EecCCcccHHHHHH---HhcCCCEEEEcCCC-CCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHH
Confidence 12233444444332 34678999999998 55444555555665533 3345678899999866543
No 177
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.55 E-value=0.00077 Score=74.37 Aligned_cols=125 Identities=18% Similarity=0.241 Sum_probs=72.3
Q ss_pred CCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCCEEeEEeeccccCCCCC
Q 002552 297 NQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLGETVGYQIRLESKRSAQT 376 (908)
Q Consensus 297 ~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~~~~~~~g~~vg~~~~~~~~~~~~~ 376 (908)
.++++++||||+||||.+..+..... . .+....++-+=|-|+.+.+..+..++..+..
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~-~--~GkkVglI~aDt~RiaAvEQLk~yae~lgip------------------- 298 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFH-G--KKKTVGFITTDHSRIGTVQQLQDYVKTIGFE------------------- 298 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHH-H--cCCcEEEEecCCcchHHHHHHHHHhhhcCCc-------------------
Confidence 36899999999999988877665432 1 2222223333366765554444443332211
Q ss_pred cEEEEchHHHHHHHhcCCCCCcceEEEEechhccch-hhHHHHHHHHHHCccCCCCcEEEecccCChHH
Q 002552 377 RLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGM-NEDFLLIILRDLLPRRPDLRLILMSATINADL 444 (908)
Q Consensus 377 ~Iiv~T~g~Ll~~l~~~~~l~~~~~iIiDEaHeR~~-~~d~ll~~lk~~~~~~~~~qiIlmSAT~~~~~ 444 (908)
-+...++..+.+.+..-..-.++++|+||-+= |.. +.+.+..+.+.+....|+..++.+|||.....
T Consensus 299 v~v~~d~~~L~~aL~~lk~~~~~DvVLIDTaG-Rs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d 366 (436)
T PRK11889 299 VIAVRDEAAMTRALTYFKEEARVDYILIDTAG-KNYRASETVEEMIETMGQVEPDYICLTLSASMKSKD 366 (436)
T ss_pred EEecCCHHHHHHHHHHHHhccCCCEEEEeCcc-ccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHH
Confidence 12234677776666432222368999999997 443 33444444444434556666777999985543
No 178
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=97.53 E-value=0.0002 Score=77.70 Aligned_cols=73 Identities=14% Similarity=0.125 Sum_probs=53.7
Q ss_pred CCCchHHHHH----HHHHHHhCCeEEEEecCCCCccchHHHHHHHHHHhccCC-CCcEEEEEcccHHHHHHHHHHHHH
Q 002552 280 KLPAFKMKAE----FLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRG-ADCNIICTQPRRISAISVAARVSS 352 (908)
Q Consensus 280 ~lpi~~~Q~~----~i~~i~~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~-~~~~ilv~~P~r~la~qi~~rv~~ 352 (908)
++..++.|.+ +...+.+++++++.||||+|||++++.+++......... ...+|+++.+|..+..|....+.+
T Consensus 6 Py~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~ 83 (289)
T smart00488 6 PYEPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRK 83 (289)
T ss_pred CCCCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHh
Confidence 3445788988 555567789999999999999999999887655432221 124788889999987777655543
No 179
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=97.53 E-value=0.0002 Score=77.70 Aligned_cols=73 Identities=14% Similarity=0.125 Sum_probs=53.7
Q ss_pred CCCchHHHHH----HHHHHHhCCeEEEEecCCCCccchHHHHHHHHHHhccCC-CCcEEEEEcccHHHHHHHHHHHHH
Q 002552 280 KLPAFKMKAE----FLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRG-ADCNIICTQPRRISAISVAARVSS 352 (908)
Q Consensus 280 ~lpi~~~Q~~----~i~~i~~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~-~~~~ilv~~P~r~la~qi~~rv~~ 352 (908)
++..++.|.+ +...+.+++++++.||||+|||++++.+++......... ...+|+++.+|..+..|....+.+
T Consensus 6 Py~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~ 83 (289)
T smart00489 6 PYEPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRK 83 (289)
T ss_pred CCCCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHh
Confidence 3445788988 555567789999999999999999999887655432221 124788889999987777655543
No 180
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=97.47 E-value=0.00061 Score=81.07 Aligned_cols=110 Identities=14% Similarity=0.126 Sum_probs=79.7
Q ss_pred CCCcEEEecCCHHHHHHHHHHHHhcccCCCCCceEEEeccCCCChHhHHhhhCCC---CCCCcEEEEeccccccccCCCC
Q 002552 553 GDGAILVFLTGWNDISKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRP---PPNKRKIVLATNIAESSITIDD 629 (908)
Q Consensus 553 ~~g~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lH~~l~~~er~~v~~~f---~~g~~kIlvaT~iae~GidIp~ 629 (908)
.++.||.|+.-..-+..+.++|.- ..+..+-+-|....++|-..++.| -+.....|++|-....|+|+--
T Consensus 725 tgHRVLlF~qMTrlmdimEdyL~~-------~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~FllstragglglNlQt 797 (1157)
T KOG0386|consen 725 TGHRVLLFSQMTRLMDILEDYLQI-------REYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLLSTRAGGLGLNLQT 797 (1157)
T ss_pred cCcchhhHHHHHHHHHHHHHHHhh-------hhhheeeecCCcchhhHHHHHHHhcCCCCceeeeeeeecccccccchhh
Confidence 478999999887777777777765 456666688888888887665555 4457889999999999999999
Q ss_pred eEEEEeCCCccceeeccccCccccccccccHhhHHHhcccc---CCCCCcEEEEecChhhH
Q 002552 630 VVYVVDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRA---GRVQPGVCYKLYPRIIH 687 (908)
Q Consensus 630 v~~VId~g~~k~~~yd~~~~~~~l~~~~iS~~~~~QR~GRa---GR~~~G~~~~l~~~~~~ 687 (908)
.+.||-++--.++. ...|+.-|| |-.+.=..++|.+-..+
T Consensus 798 adtviifdsdwnp~------------------~d~qaqdrahrigq~~evRv~rl~tv~sv 840 (1157)
T KOG0386|consen 798 ADTVIIFDSDWNPH------------------QDLQAQDRAHRIGQKKEVRVLRLITVNSV 840 (1157)
T ss_pred cceEEEecCCCCch------------------hHHHHHHHHHHhhchhheeeeeeehhhHH
Confidence 98888766444333 344444444 44466778888875443
No 181
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.47 E-value=0.00029 Score=79.03 Aligned_cols=94 Identities=15% Similarity=0.179 Sum_probs=60.8
Q ss_pred CeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCCEEeEEeeccccCCCCCc
Q 002552 298 QVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLGETVGYQIRLESKRSAQTR 377 (908)
Q Consensus 298 ~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~~~~~~~g~~vg~~~~~~~~~~~~~~ 377 (908)
++++|.|..|||||..+...+.+. .. ......++++.+...+...+.+.+..... .....
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l-~~--~~~~~~~~~l~~n~~l~~~l~~~l~~~~~-----------------~~~~~ 61 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKEL-QN--SEEGKKVLYLCGNHPLRNKLREQLAKKYN-----------------PKLKK 61 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHh-hc--cccCCceEEEEecchHHHHHHHHHhhhcc-----------------cchhh
Confidence 578999999999997666555443 11 12244667777888998888777765430 00123
Q ss_pred EEEEchHHHHHHHh-cCCCCCcceEEEEechhccch
Q 002552 378 LLFCTTGVLLRQLV-EDPDLSCVSHLLVDEIHERGM 412 (908)
Q Consensus 378 Iiv~T~g~Ll~~l~-~~~~l~~~~~iIiDEaHeR~~ 412 (908)
..+..+..+...+. .......+++||||||| |..
T Consensus 62 ~~~~~~~~~i~~~~~~~~~~~~~DviivDEAq-rl~ 96 (352)
T PF09848_consen 62 SDFRKPTSFINNYSESDKEKNKYDVIIVDEAQ-RLR 96 (352)
T ss_pred hhhhhhHHHHhhcccccccCCcCCEEEEehhH-hhh
Confidence 34445555555443 33367899999999999 533
No 182
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.47 E-value=0.0052 Score=70.26 Aligned_cols=127 Identities=20% Similarity=0.248 Sum_probs=72.2
Q ss_pred hCCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCCEEeEEeeccccCCCC
Q 002552 296 ENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLGETVGYQIRLESKRSAQ 375 (908)
Q Consensus 296 ~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~~~~~~~g~~vg~~~~~~~~~~~~ 375 (908)
.+++++++||||+||||.+..+........ .+....++-+-|-|..+.+.....+..++..+
T Consensus 220 ~~~~i~~vGptGvGKTTt~~kLA~~~~~~~-~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~----------------- 281 (424)
T PRK05703 220 QGGVVALVGPTGVGKTTTLAKLAARYALLY-GKKKVALITLDTYRIGAVEQLKTYAKIMGIPV----------------- 281 (424)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhc-CCCeEEEEECCccHHHHHHHHHHHHHHhCCce-----------------
Confidence 467899999999999988877665543111 22223333344667766555454544443211
Q ss_pred CcEEEEchHHHHHHHhcCCCCCcceEEEEechhccchhhHHHHHHHHHHCc--cCCCCcEEEecccCChHHHH
Q 002552 376 TRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLP--RRPDLRLILMSATINADLFS 446 (908)
Q Consensus 376 ~~Iiv~T~g~Ll~~l~~~~~l~~~~~iIiDEaHeR~~~~d~ll~~lk~~~~--~~~~~qiIlmSAT~~~~~~~ 446 (908)
....++.-+...+.. +.++++||||.+-....+...+.. ++.++. ..+....+++|||.....+.
T Consensus 282 --~~~~~~~~l~~~l~~---~~~~DlVlIDt~G~~~~d~~~~~~-L~~ll~~~~~~~~~~LVl~a~~~~~~l~ 348 (424)
T PRK05703 282 --EVVYDPKELAKALEQ---LRDCDVILIDTAGRSQRDKRLIEE-LKALIEFSGEPIDVYLVLSATTKYEDLK 348 (424)
T ss_pred --EccCCHHhHHHHHHH---hCCCCEEEEeCCCCCCCCHHHHHH-HHHHHhccCCCCeEEEEEECCCCHHHHH
Confidence 112344555555542 457899999999732233333222 233322 23445688899999766544
No 183
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.46 E-value=0.00085 Score=81.89 Aligned_cols=126 Identities=21% Similarity=0.197 Sum_probs=80.3
Q ss_pred cCCCchHHHHHHHHHHHhCCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCC
Q 002552 279 EKLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENL 358 (908)
Q Consensus 279 ~~lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~~~~~~~ 358 (908)
....+.+-|.+++..+..++.++|+|+.|+||||.+-.. ++.+... +....|+++.||--+|..+. +..+..
T Consensus 320 ~~~~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l~~i-~~~~~~~--~~~~~v~l~ApTg~AA~~L~----e~~g~~- 391 (720)
T TIGR01448 320 LRKGLSEEQKQALDTAIQHKVVILTGGPGTGKTTITRAI-IELAEEL--GGLLPVGLAAPTGRAAKRLG----EVTGLT- 391 (720)
T ss_pred cCCCCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHHHHH-HHHHHHc--CCCceEEEEeCchHHHHHHH----HhcCCc-
Confidence 456788999999999999999999999999999866433 3333221 11246888999998886543 322211
Q ss_pred CCEEeEEeeccccCCCCCcEEEEchHHHHHHHhcC------CCCCcceEEEEechhccchhhHHHHHHHHHHCccCCCCc
Q 002552 359 GETVGYQIRLESKRSAQTRLLFCTTGVLLRQLVED------PDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLR 432 (908)
Q Consensus 359 g~~vg~~~~~~~~~~~~~~Iiv~T~g~Ll~~l~~~------~~l~~~~~iIiDEaHeR~~~~d~ll~~lk~~~~~~~~~q 432 (908)
-.|-..|+...... ......++|||||++. ++...+..+++. ..+..|
T Consensus 392 ---------------------a~Tih~lL~~~~~~~~~~~~~~~~~~~llIvDEaSM--vd~~~~~~Ll~~---~~~~~r 445 (720)
T TIGR01448 392 ---------------------ASTIHRLLGYGPDTFRHNHLEDPIDCDLLIVDESSM--MDTWLALSLLAA---LPDHAR 445 (720)
T ss_pred ---------------------cccHHHHhhccCCccchhhhhccccCCEEEEecccc--CCHHHHHHHHHh---CCCCCE
Confidence 11222232211100 1124678999999994 676666666653 345678
Q ss_pred EEEecc
Q 002552 433 LILMSA 438 (908)
Q Consensus 433 iIlmSA 438 (908)
+|++-=
T Consensus 446 lilvGD 451 (720)
T TIGR01448 446 LLLVGD 451 (720)
T ss_pred EEEECc
Confidence 888753
No 184
>cd06007 R3H_DEXH_helicase R3H domain of a group of proteins which also contain a DEXH-box helicase domain, and may function as ATP-dependent DNA or RNA helicases. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=97.44 E-value=0.00026 Score=56.23 Aligned_cols=48 Identities=17% Similarity=0.348 Sum_probs=44.6
Q ss_pred hHHHHHhhccccceeeccccCCchhHHHHHHHHHhcCcceeeecCCce
Q 002552 122 WGKLEQMKRGEEQEMIIKRKFSRADQQTLADMAHQLGLHFHAYNKGKA 169 (908)
Q Consensus 122 r~~~~~~~~~~~~e~~~~~~~s~~e~~~i~~~a~~~gl~~~~~~~g~~ 169 (908)
...+++|..++++++.|+++++..||..+|++|.++||.++|+|+|.+
T Consensus 5 ~~~i~~F~~~~~~~l~Fpp~ls~~eR~~vH~~a~~~gL~s~S~G~g~~ 52 (59)
T cd06007 5 NKALEDFRASDNEEYEFPSSLTNHERAVIHRLCRKLGLKSKSKGKGSN 52 (59)
T ss_pred HHHHHHHHcCcccEEEcCCCCCHHHHHHHHHHHHHcCCCceeecCCCC
Confidence 467889999998899999999999999999999999999999998877
No 185
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=97.44 E-value=0.00084 Score=81.97 Aligned_cols=137 Identities=17% Similarity=0.234 Sum_probs=77.6
Q ss_pred CeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHH-----HHhCCCC-CCEEeEEeecc--
Q 002552 298 QVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVS-----SERGENL-GETVGYQIRLE-- 369 (908)
Q Consensus 298 ~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~-----~~~~~~~-g~~vg~~~~~~-- 369 (908)
.++.+.++||+|||..+...|++..... ...++|+++|+.+.-..+.+-+. ..+.... +..+-+.+-..
T Consensus 60 ~n~~~~M~TGtGKT~~~~~~i~~l~~~~---~~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~~S~k 136 (986)
T PRK15483 60 ANIDIKMETGTGKTYVYTRLMYELHQKY---GLFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVINAGD 136 (986)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHHc---CCcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEEecCc
Confidence 5899999999999988877776654321 13578889999887766654432 1111111 22232221110
Q ss_pred ----------cc----------CCCCCcEEEEchHHHHHHHhc-------------CC--CCCc-ceEEEEechhccchh
Q 002552 370 ----------SK----------RSAQTRLLFCTTGVLLRQLVE-------------DP--DLSC-VSHLLVDEIHERGMN 413 (908)
Q Consensus 370 ----------~~----------~~~~~~Iiv~T~g~Ll~~l~~-------------~~--~l~~-~~~iIiDEaHeR~~~ 413 (908)
.. ......|+++|.++|...... .| .+.. =-+||+||.|+..-.
T Consensus 137 ~~k~gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEPh~~~~~ 216 (986)
T PRK15483 137 KKKSGRKNFPAQLSNFVKASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEPHRFPRD 216 (986)
T ss_pred ccccccccChHHHHHHHhccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECCCCCCcc
Confidence 00 011468999999988653220 11 1112 247999999953111
Q ss_pred hHHHHHHHHHHCccCCCCcEEEecccCCh
Q 002552 414 EDFLLIILRDLLPRRPDLRLILMSATINA 442 (908)
Q Consensus 414 ~d~ll~~lk~~~~~~~~~qiIlmSAT~~~ 442 (908)
... .+.+...+|.. ++.+|||.+.
T Consensus 217 ~k~----~~~i~~lnpl~-~lrysAT~~~ 240 (986)
T PRK15483 217 NKF----YQAIEALKPQM-IIRFGATFPD 240 (986)
T ss_pred hHH----HHHHHhcCccc-EEEEeeecCC
Confidence 111 13334455544 6669999965
No 186
>cd02640 R3H_NRF R3H domain of the NF-kappaB-repression factor (NRF). NRF is a nuclear inhibitor of NF-kappaB proteins that can silence the IFNbeta promoter via binding to a negative regulatory element (NRE). Beside R3H NRF also contains a G-patch domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=97.43 E-value=0.00033 Score=55.91 Aligned_cols=49 Identities=16% Similarity=0.468 Sum_probs=45.0
Q ss_pred HhHHHHHhhccc-cceeeccccCCchhHHHHHHHHHhcCcceeeecCCce
Q 002552 121 WWGKLEQMKRGE-EQEMIIKRKFSRADQQTLADMAHQLGLHFHAYNKGKA 169 (908)
Q Consensus 121 ~r~~~~~~~~~~-~~e~~~~~~~s~~e~~~i~~~a~~~gl~~~~~~~g~~ 169 (908)
.+..+.+|..+. .+++.|+++++..||..+|++|+.+||+++|+|.|..
T Consensus 4 ~~~~i~~F~~s~~~~~l~f~p~lt~~eR~~vH~~a~~~gL~s~S~G~g~~ 53 (60)
T cd02640 4 YRQIIQNYAHSDDIRDMVFSPEFSKEERALIHQIAQKYGLKSRSYGSGND 53 (60)
T ss_pred HHHHHHHHHcCCccceEEcCCCCCHHHHHHHHHHHHHcCCceeeEeCCCC
Confidence 367788999888 8899999999999999999999999999999998877
No 187
>PRK10536 hypothetical protein; Provisional
Probab=97.41 E-value=0.00039 Score=72.63 Aligned_cols=58 Identities=31% Similarity=0.412 Sum_probs=46.2
Q ss_pred CCchHHHHHHHHHHHhCCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHH
Q 002552 281 LPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRI 341 (908)
Q Consensus 281 lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~ 341 (908)
-|.+..|...+..+.++..+++.|++|||||+.+..+.++.+.. +.-.+|+++-|...
T Consensus 58 ~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~---~~~~kIiI~RP~v~ 115 (262)
T PRK10536 58 LARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIH---KDVDRIIVTRPVLQ 115 (262)
T ss_pred cCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhc---CCeeEEEEeCCCCC
Confidence 46778899999999999999999999999998888777766543 22457888777654
No 188
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=97.40 E-value=0.0057 Score=77.59 Aligned_cols=110 Identities=20% Similarity=0.238 Sum_probs=89.7
Q ss_pred cEEEecCCHHHHHHHHHHHHhcccCCCCCceEEEeccCCCChHhHHhhhCCCCCC--CcEEEEeccccccccCCCCeEEE
Q 002552 556 AILVFLTGWNDISKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPN--KRKIVLATNIAESSITIDDVVYV 633 (908)
Q Consensus 556 ~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lH~~l~~~er~~v~~~f~~g--~~kIlvaT~iae~GidIp~v~~V 633 (908)
++|||.+-....+-+...+.. ..+....++|+++.++|...++.|.++ ..-++++|-.+..|+|+-..+.|
T Consensus 713 kvlifsq~t~~l~il~~~l~~-------~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~glnLt~a~~v 785 (866)
T COG0553 713 KVLIFSQFTPVLDLLEDYLKA-------LGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGADTV 785 (866)
T ss_pred cEEEEeCcHHHHHHHHHHHHh-------cCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccccceeecccceE
Confidence 799999999998888888876 336688899999999999999999885 56778888899999999999999
Q ss_pred EeCCCccceeeccccCccccccccccHhhHHHhccccCCCCCcEEEEecChhhH
Q 002552 634 VDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRVQPGVCYKLYPRIIH 687 (908)
Q Consensus 634 Id~g~~k~~~yd~~~~~~~l~~~~iS~~~~~QR~GRaGR~~~G~~~~l~~~~~~ 687 (908)
|.++...+.. -...+..|+-|.|+.++=..|++.++...
T Consensus 786 i~~d~~wnp~---------------~~~Qa~dRa~RigQ~~~v~v~r~i~~~ti 824 (866)
T COG0553 786 ILFDPWWNPA---------------VELQAIDRAHRIGQKRPVKVYRLITRGTI 824 (866)
T ss_pred EEeccccChH---------------HHHHHHHHHHHhcCcceeEEEEeecCCcH
Confidence 9977655332 22356667777788888889999988653
No 189
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=97.37 E-value=0.00056 Score=82.87 Aligned_cols=104 Identities=22% Similarity=0.265 Sum_probs=75.5
Q ss_pred CCCcEEEecCCHHHHHHHHHHHHhcccCCCCCceEEEeccCCCChHhHHhhhCCCCCCCcEEEEeccccccccCCC----
Q 002552 553 GDGAILVFLTGWNDISKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITID---- 628 (908)
Q Consensus 553 ~~g~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lH~~l~~~er~~v~~~f~~g~~kIlvaT~iae~GidIp---- 628 (908)
.+.+|||-+.+.+..+.|+++|...... .-.|++.....|-+.|-++=+.| .|-||||.|.||-||.
T Consensus 627 ~GrPVLVGT~SVe~SE~lS~~L~~~gI~-------H~VLNAK~h~~EAeIVA~AG~~G--aVTIATNMAGRGTDIkLg~~ 697 (1112)
T PRK12901 627 AGRPVLVGTTSVEISELLSRMLKMRKIP-------HNVLNAKLHQKEAEIVAEAGQPG--TVTIATNMAGRGTDIKLSPE 697 (1112)
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHHcCCc-------HHHhhccchhhHHHHHHhcCCCC--cEEEeccCcCCCcCcccchh
Confidence 5678999999999999999999885432 22255544445555554444444 5889999999999997
Q ss_pred ----CeEEEEeCCCccceeeccccCccccccccccHhhHHHhccccCCC-CCcEEEEecC
Q 002552 629 ----DVVYVVDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRV-QPGVCYKLYP 683 (908)
Q Consensus 629 ----~v~~VId~g~~k~~~yd~~~~~~~l~~~~iS~~~~~QR~GRaGR~-~~G~~~~l~~ 683 (908)
+=-+||-+..+. |+--=.|-+|||||. .||.+-.+.+
T Consensus 698 V~e~GGL~VIgTerhe------------------SrRID~QLrGRaGRQGDPGsS~f~lS 739 (1112)
T PRK12901 698 VKAAGGLAIIGTERHE------------------SRRVDRQLRGRAGRQGDPGSSQFYVS 739 (1112)
T ss_pred hHHcCCCEEEEccCCC------------------cHHHHHHHhcccccCCCCCcceEEEE
Confidence 335777766666 555678999999999 6787655544
No 190
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=97.36 E-value=0.0012 Score=70.26 Aligned_cols=140 Identities=19% Similarity=0.208 Sum_probs=83.0
Q ss_pred CCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCCEEeEEeeccccCCCCC
Q 002552 297 NQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLGETVGYQIRLESKRSAQT 376 (908)
Q Consensus 297 ~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~~~~~~~g~~vg~~~~~~~~~~~~~ 376 (908)
..-.++-=.||.||--++.-.|+++.+. | ..+.|++...-.|-....+.++..-...+-..--..........-..
T Consensus 62 R~Gf~lGDGtGvGKGR~iAgiI~~n~l~---G-r~r~vwvS~s~dL~~Da~RDl~DIG~~~i~v~~l~~~~~~~~~~~~~ 137 (303)
T PF13872_consen 62 RAGFFLGDGTGVGKGRQIAGIILENWLR---G-RKRAVWVSVSNDLKYDAERDLRDIGADNIPVHPLNKFKYGDIIRLKE 137 (303)
T ss_pred CcEEEeccCCCcCccchhHHHHHHHHHc---C-CCceEEEECChhhhhHHHHHHHHhCCCcccceechhhccCcCCCCCC
Confidence 4567777789999999999999998764 2 23577777778888776666655432221111001111111112245
Q ss_pred cEEEEchHHHHHHHhcCC----CCC---------cceEEEEechhccc-hhhH-----HHHHHHHHHCccCCCCcEEEec
Q 002552 377 RLLFCTTGVLLRQLVEDP----DLS---------CVSHLLVDEIHERG-MNED-----FLLIILRDLLPRRPDLRLILMS 437 (908)
Q Consensus 377 ~Iiv~T~g~Ll~~l~~~~----~l~---------~~~~iIiDEaHeR~-~~~d-----~ll~~lk~~~~~~~~~qiIlmS 437 (908)
.|+|+|.-.|...-.... .|+ -=.+||+||||+-. ...+ -.-.....+...-|+.++|-+|
T Consensus 138 GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~LP~ARvvY~S 217 (303)
T PF13872_consen 138 GVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRLPNARVVYAS 217 (303)
T ss_pred CccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchhcCCCCccCccccHHHHHHHHHHHhCCCCcEEEec
Confidence 699999988776643211 111 12599999999521 1110 0111222344456788999999
Q ss_pred ccC
Q 002552 438 ATI 440 (908)
Q Consensus 438 AT~ 440 (908)
||-
T Consensus 218 ATg 220 (303)
T PF13872_consen 218 ATG 220 (303)
T ss_pred ccc
Confidence 996
No 191
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.32 E-value=0.0013 Score=72.49 Aligned_cols=130 Identities=19% Similarity=0.244 Sum_probs=75.9
Q ss_pred hCCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCCEEeEEeeccccCCCC
Q 002552 296 ENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLGETVGYQIRLESKRSAQ 375 (908)
Q Consensus 296 ~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~~~~~~~g~~vg~~~~~~~~~~~~ 375 (908)
.+++++++||||+||||.+........ . .+....++-+=|-|..|....+..++.++..
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~-~--~g~~V~lItaDtyR~gAveQLk~yae~lgvp------------------ 263 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLL-K--QNRTVGFITTDTFRSGAVEQFQGYADKLDVE------------------ 263 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-H--cCCeEEEEeCCccCccHHHHHHHHhhcCCCC------------------
Confidence 467899999999999988877665432 2 2323333444466776655444444433221
Q ss_pred CcEEEEchHHHHHHHhcCCCCCcceEEEEechhccc-hhhHHHHHHHHHHCccCCCCcEEEecccCChHHHHhh
Q 002552 376 TRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERG-MNEDFLLIILRDLLPRRPDLRLILMSATINADLFSKY 448 (908)
Q Consensus 376 ~~Iiv~T~g~Ll~~l~~~~~l~~~~~iIiDEaHeR~-~~~d~ll~~lk~~~~~~~~~qiIlmSAT~~~~~~~~~ 448 (908)
-.+..+|.-|.+.+..-....++++||||=+= |. .+.+.+..+.+......|+.-++.+|||.....+.+.
T Consensus 264 -v~~~~dp~dL~~al~~l~~~~~~D~VLIDTAG-r~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~~~d~~~i 335 (407)
T PRK12726 264 -LIVATSPAELEEAVQYMTYVNCVDHILIDTVG-RNYLAEESVSEISAYTDVVHPDLTCFTFSSGMKSADVMTI 335 (407)
T ss_pred -EEecCCHHHHHHHHHHHHhcCCCCEEEEECCC-CCccCHHHHHHHHHHhhccCCceEEEECCCcccHHHHHHH
Confidence 01123566665555332233578999999997 43 3334444333333234566667888998876654444
No 192
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=97.23 E-value=0.0012 Score=74.18 Aligned_cols=111 Identities=23% Similarity=0.320 Sum_probs=65.5
Q ss_pred HHHHHHHHHH------HhCCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHH--HHHHHHHhCC
Q 002552 285 KMKAEFLKAV------AENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISV--AARVSSERGE 356 (908)
Q Consensus 285 ~~Q~~~i~~i------~~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi--~~rv~~~~~~ 356 (908)
+-|+.++..+ .++.++.|.|+-|+|||+.+-.++- . -+..+..+++++||-.+|..+ ..-+...++.
T Consensus 4 ~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~-~----~~~~~~~~~~~a~tg~AA~~i~~G~T~hs~f~i 78 (364)
T PF05970_consen 4 EEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIID-Y----LRSRGKKVLVTAPTGIAAFNIPGGRTIHSFFGI 78 (364)
T ss_pred HHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHH-H----hccccceEEEecchHHHHHhccCCcchHHhcCc
Confidence 4566676666 6788999999999999964433322 1 122356799999999999887 3444444443
Q ss_pred CCCCEEeEEeeccccCCCCCcEEEEchHHHHHHHhcCCCCCcceEEEEechhccchhhHHHHHH
Q 002552 357 NLGETVGYQIRLESKRSAQTRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLII 420 (908)
Q Consensus 357 ~~g~~vg~~~~~~~~~~~~~~Iiv~T~g~Ll~~l~~~~~l~~~~~iIiDEaHeR~~~~d~ll~~ 420 (908)
.++.. . ...+-+.....+. ..+.++++|||||+= |+..+.+..+
T Consensus 79 ~~~~~--------~----~~~~~~~~~~~~~------~~l~~~~~lIiDEis--m~~~~~l~~i 122 (364)
T PF05970_consen 79 PINNN--------E----KSQCKISKNSRLR------ERLRKADVLIIDEIS--MVSADMLDAI 122 (364)
T ss_pred ccccc--------c----cccccccccchhh------hhhhhheeeeccccc--chhHHHHHHH
Confidence 32110 0 0000000111111 156889999999996 3555555444
No 193
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.22 E-value=0.0023 Score=78.48 Aligned_cols=123 Identities=21% Similarity=0.202 Sum_probs=79.6
Q ss_pred CCCchHHHHHHHHHHHh-CCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCC
Q 002552 280 KLPAFKMKAEFLKAVAE-NQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENL 358 (908)
Q Consensus 280 ~lpi~~~Q~~~i~~i~~-~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~~~~~~~ 358 (908)
...+.+-|.+++..+.. ++.++|+|+.|+||||.+-. +.+.+.. .+.+|++++||--+|..+.+ ..+..
T Consensus 350 ~~~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll~~-i~~~~~~----~g~~V~~~ApTg~Aa~~L~~----~~g~~- 419 (744)
T TIGR02768 350 HYRLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTMLKA-AREAWEA----AGYRVIGAALSGKAAEGLQA----ESGIE- 419 (744)
T ss_pred cCCCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHHHH-HHHHHHh----CCCeEEEEeCcHHHHHHHHh----ccCCc-
Confidence 45678899999999887 57999999999999976544 3333222 24578899999887765532 11211
Q ss_pred CCEEeEEeeccccCCCCCcEEEEchHHHHHHHhcCC-CCCcceEEEEechhccchhhHHHHHHHHHHCccCCCCcEEEec
Q 002552 359 GETVGYQIRLESKRSAQTRLLFCTTGVLLRQLVEDP-DLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILMS 437 (908)
Q Consensus 359 g~~vg~~~~~~~~~~~~~~Iiv~T~g~Ll~~l~~~~-~l~~~~~iIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiIlmS 437 (908)
-.|-..++..+..+. .+...++|||||+-. ++.+.+..+++.... ...|+|++-
T Consensus 420 ---------------------a~Ti~~~~~~~~~~~~~~~~~~llIvDEasM--v~~~~~~~Ll~~~~~--~~~kliLVG 474 (744)
T TIGR02768 420 ---------------------SRTLASLEYAWANGRDLLSDKDVLVIDEAGM--VGSRQMARVLKEAEE--AGAKVVLVG 474 (744)
T ss_pred ---------------------eeeHHHHHhhhccCcccCCCCcEEEEECccc--CCHHHHHHHHHHHHh--cCCEEEEEC
Confidence 113333332223332 567899999999973 666666666655432 356777764
No 194
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.21 E-value=0.0032 Score=60.16 Aligned_cols=29 Identities=28% Similarity=0.354 Sum_probs=21.0
Q ss_pred HHHHHHHh--CCeEEEEecCCCCccchHHHH
Q 002552 289 EFLKAVAE--NQVLVVSGETGCGKTTQLPQF 317 (908)
Q Consensus 289 ~~i~~i~~--~~~vii~a~TGSGKTt~~~~~ 317 (908)
++...+.. ++.+++.|++|+|||+.+-..
T Consensus 9 ~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i 39 (151)
T cd00009 9 ALREALELPPPKNLLLYGPPGTGKTTLARAI 39 (151)
T ss_pred HHHHHHhCCCCCeEEEECCCCCCHHHHHHHH
Confidence 34444544 789999999999999644443
No 195
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.21 E-value=0.0027 Score=78.96 Aligned_cols=126 Identities=20% Similarity=0.156 Sum_probs=81.8
Q ss_pred cCCCchHHHHHHHHHHHh-CCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCC
Q 002552 279 EKLPAFKMKAEFLKAVAE-NQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGEN 357 (908)
Q Consensus 279 ~~lpi~~~Q~~~i~~i~~-~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~~~~~~ 357 (908)
..+.+.+-|.+++..+.. ++.++|+|..|+||||.+ ..+.+.+.. .+.+|+.+.||-.+|..+.+ ..+.
T Consensus 343 ~g~~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~l-~~~~~~~e~----~G~~V~~~ApTGkAA~~L~e----~tGi- 412 (988)
T PRK13889 343 RGLVLSGEQADALAHVTDGRDLGVVVGYAGTGKSAML-GVAREAWEA----AGYEVRGAALSGIAAENLEG----GSGI- 412 (988)
T ss_pred cCCCCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHHH-HHHHHHHHH----cCCeEEEecCcHHHHHHHhh----ccCc-
Confidence 346788999999999887 457899999999999864 334333322 24578899999887755532 1111
Q ss_pred CCCEEeEEeeccccCCCCCcEEEEchHHHHHHHhcCC-CCCcceEEEEechhccchhhHHHHHHHHHHCccCCCCcEEEe
Q 002552 358 LGETVGYQIRLESKRSAQTRLLFCTTGVLLRQLVEDP-DLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILM 436 (908)
Q Consensus 358 ~g~~vg~~~~~~~~~~~~~~Iiv~T~g~Ll~~l~~~~-~l~~~~~iIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiIlm 436 (908)
--.|-..|+..+..+. .+...++|||||+- |+++..+..+++.+.. ...|+|++
T Consensus 413 ---------------------~a~TI~sll~~~~~~~~~l~~~~vlIVDEAS--Mv~~~~m~~LL~~a~~--~garvVLV 467 (988)
T PRK13889 413 ---------------------ASRTIASLEHGWGQGRDLLTSRDVLVIDEAG--MVGTRQLERVLSHAAD--AGAKVVLV 467 (988)
T ss_pred ---------------------chhhHHHHHhhhcccccccccCcEEEEECcc--cCCHHHHHHHHHhhhh--CCCEEEEE
Confidence 0113334433222222 57788999999997 3677766666665433 45788887
Q ss_pred ccc
Q 002552 437 SAT 439 (908)
Q Consensus 437 SAT 439 (908)
-=+
T Consensus 468 GD~ 470 (988)
T PRK13889 468 GDP 470 (988)
T ss_pred CCH
Confidence 533
No 196
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=97.21 E-value=0.016 Score=69.59 Aligned_cols=123 Identities=20% Similarity=0.127 Sum_probs=71.6
Q ss_pred CCchHHHHHHHHHHHhCCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCC
Q 002552 281 LPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLGE 360 (908)
Q Consensus 281 lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~~~~~~~g~ 360 (908)
+-..++--+++-.+.-+.--|.-..||=|||+.+.+++.-..+. | .+.-+|++.- =||.--++.+... -..+|.
T Consensus 77 lg~~~~dVQliG~i~lh~g~iaEM~TGEGKTL~atlp~ylnaL~---g-kgVhvVTvNd-YLA~RDae~m~~l-~~~LGl 150 (822)
T COG0653 77 LGMRHFDVQLLGGIVLHLGDIAEMRTGEGKTLVATLPAYLNALA---G-KGVHVVTVND-YLARRDAEWMGPL-YEFLGL 150 (822)
T ss_pred cCCChhhHHHhhhhhhcCCceeeeecCCchHHHHHHHHHHHhcC---C-CCcEEeeehH-HhhhhCHHHHHHH-HHHcCC
Confidence 33334444566666666666999999999998887777655543 2 2234455442 2332222222222 123567
Q ss_pred EEeEEeecccc----CCCCCcEEEEchHH-----HHHHHhcCC---CCCcceEEEEechhc
Q 002552 361 TVGYQIRLESK----RSAQTRLLFCTTGV-----LLRQLVEDP---DLSCVSHLLVDEIHE 409 (908)
Q Consensus 361 ~vg~~~~~~~~----~~~~~~Iiv~T~g~-----Ll~~l~~~~---~l~~~~~iIiDEaHe 409 (908)
+||..+..... ..=.++|+|+|..- |.+-+.... .+....+-|+||+|.
T Consensus 151 svG~~~~~m~~~ek~~aY~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDS 211 (822)
T COG0653 151 SVGVILAGMSPEEKRAAYACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDS 211 (822)
T ss_pred ceeeccCCCChHHHHHHHhcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhh
Confidence 77766554322 22278999999753 333333222 456788999999983
No 197
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=97.17 E-value=0.0034 Score=64.45 Aligned_cols=130 Identities=16% Similarity=0.186 Sum_probs=84.2
Q ss_pred HHHhhcCCCchHHHHHHHHHHHh---CCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHH
Q 002552 274 MLSFREKLPAFKMKAEFLKAVAE---NQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARV 350 (908)
Q Consensus 274 ~~~~r~~lpi~~~Q~~~i~~i~~---~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv 350 (908)
+++....+=+.+.|.++...+.+ +++.+.+.-.|.|||+++. |++...+.++ ...+.+++| +.|..|..+-+
T Consensus 15 l~E~e~~iliR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsVI~-Pmla~~LAdg---~~LvrviVp-k~Ll~q~~~~L 89 (229)
T PF12340_consen 15 LFEIESNILIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSVIV-PMLALALADG---SRLVRVIVP-KALLEQMRQML 89 (229)
T ss_pred HHHHHcCceeeHHHHHHHHHHhCCCCCCCeEeeecccCCccchHH-HHHHHHHcCC---CcEEEEEcC-HHHHHHHHHHH
Confidence 45566778888999999988876 4789999999999997553 4444444332 235556667 56888888888
Q ss_pred HHHhCCCCCCEEeEEeeccccCC-----------------CCCcEEEEchHHHHHHHhcC-------------------C
Q 002552 351 SSERGENLGETVGYQIRLESKRS-----------------AQTRLLFCTTGVLLRQLVED-------------------P 394 (908)
Q Consensus 351 ~~~~~~~~g~~vg~~~~~~~~~~-----------------~~~~Iiv~T~g~Ll~~l~~~-------------------~ 394 (908)
...++.-++..| |.+.+.+... ....|+++||+.++.+.... .
T Consensus 90 ~~~lg~l~~r~i-~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~L~~le~l~~~~~~~~~~l~~~q~ 168 (229)
T PF12340_consen 90 RSRLGGLLNRRI-YHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFKLKGLERLQDGKPEEARELLKIQK 168 (229)
T ss_pred HHHHHHHhCCee-EEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 777765555544 3333322211 23459999999776543211 0
Q ss_pred CCCcceEEEEechhc
Q 002552 395 DLSCVSHLLVDEIHE 409 (908)
Q Consensus 395 ~l~~~~~iIiDEaHe 409 (908)
++++...=|+||+|+
T Consensus 169 ~l~~~~rdilDEsDe 183 (229)
T PF12340_consen 169 WLDEHSRDILDESDE 183 (229)
T ss_pred HHHhcCCeEeECchh
Confidence 234455568888884
No 198
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.13 E-value=0.00081 Score=70.46 Aligned_cols=69 Identities=19% Similarity=0.258 Sum_probs=51.9
Q ss_pred hHHHHHHHHHHHhCCe-EEEEecCCCCccchHHHHHHHHHH---hccCCCCcEEEEEcccHHHHHHHHHHHHH
Q 002552 284 FKMKAEFLKAVAENQV-LVVSGETGCGKTTQLPQFILEEEL---SSLRGADCNIICTQPRRISAISVAARVSS 352 (908)
Q Consensus 284 ~~~Q~~~i~~i~~~~~-vii~a~TGSGKTt~~~~~il~~~~---~~~~~~~~~ilv~~P~r~la~qi~~rv~~ 352 (908)
.+.|.+++..+++... .+|.||.|+|||+.+...+..... ........+||++.|+..++..+.+++.+
T Consensus 3 n~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 3 NESQREAIQSALSSNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp -HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHcCCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 4679999999999987 999999999999877766555411 01123456899999999999999999876
No 199
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=97.11 E-value=0.035 Score=64.26 Aligned_cols=108 Identities=13% Similarity=0.179 Sum_probs=79.5
Q ss_pred EEEecCCHHHHHHH-HHHHHhcccCCCCCceEEEeccCCCChHhHHhhhCCCC---CCCcEEEEeccccccccCCCCeEE
Q 002552 557 ILVFLTGWNDISKL-LDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPP---PNKRKIVLATNIAESSITIDDVVY 632 (908)
Q Consensus 557 iLVF~~~~~~i~~l-~~~L~~~~~~~~~~~~~v~~lH~~l~~~er~~v~~~f~---~g~~kIlvaT~iae~GidIp~v~~ 632 (908)
-+|-|..|..+-.+ ...|.. .++....+||.....+|+.+++.|. .|.+-.|++=...+-|||+-+-++
T Consensus 748 K~viVSQwtsvLniv~~hi~~-------~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNH 820 (901)
T KOG4439|consen 748 KVVIVSQWTSVLNIVRKHIQK-------GGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANH 820 (901)
T ss_pred eeeehhHHHHHHHHHHHHHhh-------CCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccce
Confidence 35556666665443 345554 5677888999999999999988883 346667777788889999999999
Q ss_pred EEeCCCccceeeccccCccccccccccHhhHHHhccccCCCCCcEEEEecChhh
Q 002552 633 VVDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRVQPGVCYKLYPRII 686 (908)
Q Consensus 633 VId~g~~k~~~yd~~~~~~~l~~~~iS~~~~~QR~GRaGR~~~G~~~~l~~~~~ 686 (908)
+|-.|+..+.. =..++--|+=|.|-..+=..|+|.-+..
T Consensus 821 lilvDlHWNPa---------------LEqQAcDRIYR~GQkK~V~IhR~~~~gT 859 (901)
T KOG4439|consen 821 LILVDLHWNPA---------------LEQQACDRIYRMGQKKDVFIHRLMCKGT 859 (901)
T ss_pred EEEEecccCHH---------------HHHHHHHHHHHhcccCceEEEEEEecCc
Confidence 99887775433 2236667888888888888888876543
No 200
>PF05729 NACHT: NACHT domain
Probab=97.11 E-value=0.0018 Score=63.86 Aligned_cols=59 Identities=24% Similarity=0.366 Sum_probs=37.7
Q ss_pred EEEEechhccchhhH-----HHHHHHHHHCcc--CCCCcEEEecccCChHHHHhhhCCCCccccCC
Q 002552 401 HLLVDEIHERGMNED-----FLLIILRDLLPR--RPDLRLILMSATINADLFSKYFGNAPTVHIPG 459 (908)
Q Consensus 401 ~iIiDEaHeR~~~~d-----~ll~~lk~~~~~--~~~~qiIlmSAT~~~~~~~~~f~~~~~i~v~~ 459 (908)
+||||-+||-..... -...+++.++.. .++.++++.|.+-....+.+++.....+.+.+
T Consensus 84 llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~ 149 (166)
T PF05729_consen 84 LLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEP 149 (166)
T ss_pred EEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECC
Confidence 499999998543222 234445555544 67899998888776666777776665555543
No 201
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.08 E-value=0.014 Score=67.25 Aligned_cols=129 Identities=20% Similarity=0.221 Sum_probs=68.1
Q ss_pred HHhCCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCCEEeEEeeccccCC
Q 002552 294 VAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLGETVGYQIRLESKRS 373 (908)
Q Consensus 294 i~~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~~~~~~~g~~vg~~~~~~~~~~ 373 (908)
+..+++++++|+||+||||.+..+....... ..+....++-+-+.|..+..........+ +..+ .
T Consensus 347 l~~G~vIaLVGPtGvGKTTtaakLAa~la~~-~~gkkVaLIdtDtyRigA~EQLk~ya~iL----gv~v----~------ 411 (559)
T PRK12727 347 LERGGVIALVGPTGAGKTTTIAKLAQRFAAQ-HAPRDVALVTTDTQRVGGREQLHSYGRQL----GIAV----H------ 411 (559)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHHHHh-cCCCceEEEecccccccHHHHHHHhhccc----Ccee----E------
Confidence 3457899999999999998876665543321 11112222223355665544333332221 1111 0
Q ss_pred CCCcEEEEchHHHHHHHhcCCCCCcceEEEEechhccchhhHHHHHHHHHHCccCCCCcEEEecccCChHHHH
Q 002552 374 AQTRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILMSATINADLFS 446 (908)
Q Consensus 374 ~~~~Iiv~T~g~Ll~~l~~~~~l~~~~~iIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiIlmSAT~~~~~~~ 446 (908)
...+++.|...+. .+.++++||||.+- ++.....+...+..+........+++++++.....+.
T Consensus 412 -----~a~d~~~L~~aL~---~l~~~DLVLIDTaG-~s~~D~~l~eeL~~L~aa~~~a~lLVLpAtss~~Dl~ 475 (559)
T PRK12727 412 -----EADSAESLLDLLE---RLRDYKLVLIDTAG-MGQRDRALAAQLNWLRAARQVTSLLVLPANAHFSDLD 475 (559)
T ss_pred -----ecCcHHHHHHHHH---HhccCCEEEecCCC-cchhhHHHHHHHHHHHHhhcCCcEEEEECCCChhHHH
Confidence 1123445555554 24579999999997 4322222222222232223345788899997654433
No 202
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=97.02 E-value=0.0015 Score=71.89 Aligned_cols=69 Identities=17% Similarity=0.141 Sum_probs=52.9
Q ss_pred hHHHHHHHHHHHhCCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhC
Q 002552 284 FKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERG 355 (908)
Q Consensus 284 ~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~~~~ 355 (908)
++-|.+++.. ....++|.|..|||||+.+..-+...+... .....+|||+.+|+.+|.++.+|+...++
T Consensus 2 ~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~-~~~~~~Il~lTft~~aa~e~~~ri~~~l~ 70 (315)
T PF00580_consen 2 TDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEG-GVPPERILVLTFTNAAAQEMRERIRELLE 70 (315)
T ss_dssp -HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTS-SSTGGGEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhccc-cCChHHheecccCHHHHHHHHHHHHHhcC
Confidence 4568888877 677899999999999998877766555432 23456899999999999999999988654
No 203
>PRK06526 transposase; Provisional
Probab=97.01 E-value=0.0031 Score=66.96 Aligned_cols=27 Identities=26% Similarity=0.314 Sum_probs=20.9
Q ss_pred HHhCCeEEEEecCCCCccchHHHHHHH
Q 002552 294 VAENQVLVVSGETGCGKTTQLPQFILE 320 (908)
Q Consensus 294 i~~~~~vii~a~TGSGKTt~~~~~il~ 320 (908)
+..+++++++||+|+|||+.+.....+
T Consensus 95 i~~~~nlll~Gp~GtGKThLa~al~~~ 121 (254)
T PRK06526 95 VTGKENVVFLGPPGTGKTHLAIGLGIR 121 (254)
T ss_pred hhcCceEEEEeCCCCchHHHHHHHHHH
Confidence 456789999999999999765544433
No 204
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=97.00 E-value=0.0011 Score=65.77 Aligned_cols=116 Identities=17% Similarity=0.144 Sum_probs=72.3
Q ss_pred CCCcEEEecCCHHHHHHHHHHHHhcccCCCCCceEEEeccCCCChHhHHhhhCCCCCCCcEEEEecc--ccccccCCCC-
Q 002552 553 GDGAILVFLTGWNDISKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATN--IAESSITIDD- 629 (908)
Q Consensus 553 ~~g~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lH~~l~~~er~~v~~~f~~g~~kIlvaT~--iae~GidIp~- 629 (908)
.+|.+|||+|+.+.++.+.+.+...... .++.++.- ...+...+++.|+.+.-.||+|+. .+.+|||+|+
T Consensus 8 ~~g~~lv~f~Sy~~l~~~~~~~~~~~~~---~~~~v~~q----~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~~ 80 (167)
T PF13307_consen 8 VPGGVLVFFPSYRRLEKVYERLKERLEE---KGIPVFVQ----GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPGD 80 (167)
T ss_dssp CSSEEEEEESSHHHHHHHHTT-TSS-E----ETSCEEES----TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--ECE
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhhccc---ccceeeec----CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCCc
Confidence 4588999999999999999888753211 12233322 245677888899999999999998 9999999997
Q ss_pred -eEEEEeCCCccceeeccccCcc------------ccccccccHhhHHHhccccCCCCC
Q 002552 630 -VVYVVDCGKAKETSYDALNKLA------------CLLPSWISKASAHQRRGRAGRVQP 675 (908)
Q Consensus 630 -v~~VId~g~~k~~~yd~~~~~~------------~l~~~~iS~~~~~QR~GRaGR~~~ 675 (908)
++.||-.++|-....|+..... .....+-..-...|-+||+=|...
T Consensus 81 ~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~ 139 (167)
T PF13307_consen 81 LLRAVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSED 139 (167)
T ss_dssp SEEEEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT
T ss_pred hhheeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccC
Confidence 8899999999644433321100 011112233467788999999854
No 205
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.95 E-value=0.026 Score=68.07 Aligned_cols=125 Identities=24% Similarity=0.225 Sum_probs=78.0
Q ss_pred CCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEc-ccHHHHHHHHHHHHHHhCCCCCCEEeEEeeccccCCCC
Q 002552 297 NQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQ-PRRISAISVAARVSSERGENLGETVGYQIRLESKRSAQ 375 (908)
Q Consensus 297 ~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~-P~r~la~qi~~rv~~~~~~~~g~~vg~~~~~~~~~~~~ 375 (908)
+++++++||||+||||.+.......... .+.....++.. +.|+.+.+..+.+++.++..+
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~--~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv----------------- 245 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAR--EGADQLALLTTDSFRIGALEQLRIYGRILGVPV----------------- 245 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHH--cCCCeEEEecCcccchHHHHHHHHHHHhCCCCc-----------------
Confidence 5789999999999998887766543222 22122234444 457666665565655554321
Q ss_pred CcEEEEchHHHHHHHhcCCCCCcceEEEEechhccchhhHHHHHHHHHHC-ccCCCCcEEEecccCChHHHH
Q 002552 376 TRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLL-PRRPDLRLILMSATINADLFS 446 (908)
Q Consensus 376 ~~Iiv~T~g~Ll~~l~~~~~l~~~~~iIiDEaHeR~~~~d~ll~~lk~~~-~~~~~~qiIlmSAT~~~~~~~ 446 (908)
.++.+|.-+.+.+. .+.++++|+||=+= |.....-+...++.+. ...|.-.++++|||...+.+.
T Consensus 246 --~~~~~~~~l~~al~---~~~~~D~VLIDTAG-Rs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~ 311 (767)
T PRK14723 246 --HAVKDAADLRFALA---ALGDKHLVLIDTVG-MSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLN 311 (767)
T ss_pred --cccCCHHHHHHHHH---HhcCCCEEEEeCCC-CCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHH
Confidence 12236777766665 35678999999998 5543333444444443 355677889999998766544
No 206
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.93 E-value=0.0064 Score=68.18 Aligned_cols=129 Identities=20% Similarity=0.203 Sum_probs=74.4
Q ss_pred hCCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCCEEeEEeeccccCCCC
Q 002552 296 ENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLGETVGYQIRLESKRSAQ 375 (908)
Q Consensus 296 ~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~~~~~~~g~~vg~~~~~~~~~~~~ 375 (908)
.+..++++||||+||||.+..++...... .+....++-.-+-|.++....++.+...+..+
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~--~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~----------------- 282 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLH--MGKSVSLYTTDNYRIAAIEQLKRYADTMGMPF----------------- 282 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHh--cCCeEEEecccchhhhHHHHHHHHHHhcCCCe-----------------
Confidence 35678899999999999998887654332 22233334445678888776666665544321
Q ss_pred CcEEEEchHHHHHHHhcCCCCCcceEEEEechhccc-hhhHHHHHHHHHH---CccCCCCcEEEecccCChHH---HHhh
Q 002552 376 TRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERG-MNEDFLLIILRDL---LPRRPDLRLILMSATINADL---FSKY 448 (908)
Q Consensus 376 ~~Iiv~T~g~Ll~~l~~~~~l~~~~~iIiDEaHeR~-~~~d~ll~~lk~~---~~~~~~~qiIlmSAT~~~~~---~~~~ 448 (908)
+.+.....+...+.. .++++||||=+- |. .+.+.+..+.+.+ ....+.-.++++|||...+. +.++
T Consensus 283 --~~~~~~~~l~~~l~~----~~~D~VLIDTaG-r~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~~ 355 (432)
T PRK12724 283 --YPVKDIKKFKETLAR----DGSELILIDTAG-YSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKA 355 (432)
T ss_pred --eehHHHHHHHHHHHh----CCCCEEEEeCCC-CCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHHH
Confidence 001113344444431 578999999776 43 2233333322222 12224457889999997654 3444
Q ss_pred hC
Q 002552 449 FG 450 (908)
Q Consensus 449 f~ 450 (908)
|.
T Consensus 356 f~ 357 (432)
T PRK12724 356 YE 357 (432)
T ss_pred hc
Confidence 53
No 207
>PRK04296 thymidine kinase; Provisional
Probab=96.89 E-value=0.0018 Score=65.76 Aligned_cols=98 Identities=17% Similarity=0.240 Sum_probs=54.5
Q ss_pred CCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEccc---HHHHHHHHHHHHHHhCCCCCCEEeEEeeccccCC
Q 002552 297 NQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPR---RISAISVAARVSSERGENLGETVGYQIRLESKRS 373 (908)
Q Consensus 297 ~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~---r~la~qi~~rv~~~~~~~~g~~vg~~~~~~~~~~ 373 (908)
+..++++||+|+||||.+..++...... +.+++++-|. |.....++ ..++..+
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~~~~-----g~~v~i~k~~~d~~~~~~~i~----~~lg~~~--------------- 57 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNYEER-----GMKVLVFKPAIDDRYGEGKVV----SRIGLSR--------------- 57 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHHHHc-----CCeEEEEeccccccccCCcEe----cCCCCcc---------------
Confidence 4578999999999999888887765321 3466766552 22211111 1111100
Q ss_pred CCCcEEEEchHHHHHHHhcCCCCCcceEEEEechhccchhhHHHHHHHHHH
Q 002552 374 AQTRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDL 424 (908)
Q Consensus 374 ~~~~Iiv~T~g~Ll~~l~~~~~l~~~~~iIiDEaHeR~~~~d~ll~~lk~~ 424 (908)
..+.+....-+++.+.. .-.++++|||||+| . +..+.+..+++.+
T Consensus 58 --~~~~~~~~~~~~~~~~~--~~~~~dvviIDEaq-~-l~~~~v~~l~~~l 102 (190)
T PRK04296 58 --EAIPVSSDTDIFELIEE--EGEKIDCVLIDEAQ-F-LDKEQVVQLAEVL 102 (190)
T ss_pred --cceEeCChHHHHHHHHh--hCCCCCEEEEEccc-c-CCHHHHHHHHHHH
Confidence 00223445555555544 23578999999998 3 3344344444443
No 208
>PRK14974 cell division protein FtsY; Provisional
Probab=96.88 E-value=0.0046 Score=68.09 Aligned_cols=125 Identities=18% Similarity=0.222 Sum_probs=69.2
Q ss_pred CCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEE-c-ccHHHHHHHHHHHHHHhCCCCCCEEeEEeeccccCCC
Q 002552 297 NQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICT-Q-PRRISAISVAARVSSERGENLGETVGYQIRLESKRSA 374 (908)
Q Consensus 297 ~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~-~-P~r~la~qi~~rv~~~~~~~~g~~vg~~~~~~~~~~~ 374 (908)
...++++|++|+||||.+..+... +.. .+ .+++++ . +.|..|....+..+..++..+-. .. .
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~-l~~--~g--~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~-------~~-~--- 203 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYY-LKK--NG--FSVVIAAGDTFRAGAIEQLEEHAERLGVKVIK-------HK-Y--- 203 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH-HHH--cC--CeEEEecCCcCcHHHHHHHHHHHHHcCCceec-------cc-C---
Confidence 468999999999999977766543 221 22 244333 2 34566654445555555532210 00 0
Q ss_pred CCcEEEEchH-HHHHHHhcCCCCCcceEEEEechhccch-hhHHHHHHHHHHCccCCCCcEEEecccCChHH
Q 002552 375 QTRLLFCTTG-VLLRQLVEDPDLSCVSHLLVDEIHERGM-NEDFLLIILRDLLPRRPDLRLILMSATINADL 444 (908)
Q Consensus 375 ~~~Iiv~T~g-~Ll~~l~~~~~l~~~~~iIiDEaHeR~~-~~d~ll~~lk~~~~~~~~~qiIlmSAT~~~~~ 444 (908)
+. .|- .+.+.+... ...++++||||.++ |.. +.+++..+.+......|+..+++++||...+.
T Consensus 204 g~-----dp~~v~~~ai~~~-~~~~~DvVLIDTaG-r~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~ 268 (336)
T PRK14974 204 GA-----DPAAVAYDAIEHA-KARGIDVVLIDTAG-RMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDA 268 (336)
T ss_pred CC-----CHHHHHHHHHHHH-HhCCCCEEEEECCC-ccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhH
Confidence 00 111 122222210 12467899999999 543 45555554333334568888999999985443
No 209
>PRK08181 transposase; Validated
Probab=96.83 E-value=0.012 Score=62.89 Aligned_cols=115 Identities=17% Similarity=0.228 Sum_probs=61.9
Q ss_pred HHhCCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCCEEeEEeeccccCC
Q 002552 294 VAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLGETVGYQIRLESKRS 373 (908)
Q Consensus 294 i~~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~~~~~~~g~~vg~~~~~~~~~~ 373 (908)
+..+++++++||+|+|||..+..+.. .+..+ +..++++ +..+|..++... ...
T Consensus 103 ~~~~~nlll~Gp~GtGKTHLa~Aia~-~a~~~----g~~v~f~-~~~~L~~~l~~a----~~~----------------- 155 (269)
T PRK08181 103 LAKGANLLLFGPPGGGKSHLAAAIGL-ALIEN----GWRVLFT-RTTDLVQKLQVA----RRE----------------- 155 (269)
T ss_pred HhcCceEEEEecCCCcHHHHHHHHHH-HHHHc----CCceeee-eHHHHHHHHHHH----HhC-----------------
Confidence 45788999999999999965443333 22221 2345553 334444444211 000
Q ss_pred CCCcEEEEchHHHHHHHhcCCCCCcceEEEEechhccchhh---HHHHHHHHHHCccCCCCcEEEecccCChHHHHhhhC
Q 002552 374 AQTRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNE---DFLLIILRDLLPRRPDLRLILMSATINADLFSKYFG 450 (908)
Q Consensus 374 ~~~~Iiv~T~g~Ll~~l~~~~~l~~~~~iIiDEaHeR~~~~---d~ll~~lk~~~~~~~~~qiIlmSAT~~~~~~~~~f~ 450 (908)
.+...+++. +.++++|||||++....+. +.+..++..... . +-++++.-++...+...|+
T Consensus 156 -------~~~~~~l~~------l~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~---~-~s~IiTSN~~~~~w~~~~~ 218 (269)
T PRK08181 156 -------LQLESAIAK------LDKFDLLILDDLAYVTKDQAETSVLFELISARYE---R-RSILITANQPFGEWNRVFP 218 (269)
T ss_pred -------CcHHHHHHH------HhcCCEEEEeccccccCCHHHHHHHHHHHHHHHh---C-CCEEEEcCCCHHHHHHhcC
Confidence 022233333 3578999999998432222 233333332221 2 3466666777777777775
Q ss_pred CC
Q 002552 451 NA 452 (908)
Q Consensus 451 ~~ 452 (908)
+.
T Consensus 219 D~ 220 (269)
T PRK08181 219 DP 220 (269)
T ss_pred Cc
Confidence 43
No 210
>cd02641 R3H_Smubp-2_like R3H domain of Smubp-2_like proteins. Smubp-2_like proteins also contain a helicase_like and an AN1-like Zinc finger domain and have been shown to bind single-stranded DNA. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA.
Probab=96.80 E-value=0.0031 Score=50.56 Aligned_cols=50 Identities=16% Similarity=0.304 Sum_probs=45.3
Q ss_pred HHhHHHHHhhcccc-ceeeccccCCchhHHHHHHHHHhcCcceeeecCCce
Q 002552 120 EWWGKLEQMKRGEE-QEMIIKRKFSRADQQTLADMAHQLGLHFHAYNKGKA 169 (908)
Q Consensus 120 ~~r~~~~~~~~~~~-~e~~~~~~~s~~e~~~i~~~a~~~gl~~~~~~~g~~ 169 (908)
++...+..|..+.+ .++.|+++++..+|..+|++|..+|+++.+.|.|..
T Consensus 3 ~~~~~i~~F~~~~~~~~l~F~p~ls~~eR~~vH~lA~~~gL~s~S~G~g~~ 53 (60)
T cd02641 3 HLKAMVKAFMKDPKATELEFPPTLSSHDRLLVHELAEELGLRHESTGEGSD 53 (60)
T ss_pred hHHHHHHHHHcCCCcCcEECCCCCCHHHHHHHHHHHHHcCCceEeeCCCCc
Confidence 45678889999887 899999999999999999999999999999987776
No 211
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.73 E-value=0.012 Score=62.93 Aligned_cols=126 Identities=19% Similarity=0.256 Sum_probs=69.2
Q ss_pred hCCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCCEEeEEeeccccCCCC
Q 002552 296 ENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLGETVGYQIRLESKRSAQ 375 (908)
Q Consensus 296 ~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~~~~~~~g~~vg~~~~~~~~~~~~ 375 (908)
.++.++++|++|+||||.+....... .. .+....++.+-+.|..+.+..+..+...+
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l-~~--~~~~v~~i~~D~~ri~~~~ql~~~~~~~~-------------------- 130 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQF-HG--KKKTVGFITTDHSRIGTVQQLQDYVKTIG-------------------- 130 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHH-HH--cCCeEEEEecCCCCHHHHHHHHHHhhhcC--------------------
Confidence 45799999999999998776654432 11 22222233333555444333222222221
Q ss_pred CcEEE-EchHHHHHHHhcCCCCCcceEEEEechhccch-hhHHHHHHHHHHCccCCCCcEEEecccCChHHH
Q 002552 376 TRLLF-CTTGVLLRQLVEDPDLSCVSHLLVDEIHERGM-NEDFLLIILRDLLPRRPDLRLILMSATINADLF 445 (908)
Q Consensus 376 ~~Iiv-~T~g~Ll~~l~~~~~l~~~~~iIiDEaHeR~~-~~d~ll~~lk~~~~~~~~~qiIlmSAT~~~~~~ 445 (908)
..+.. .++..+.+.+..-....++++||||-+= |.. +.+.+..+.+.+....|+..++.+|||...+..
T Consensus 131 ~~~~~~~~~~~l~~~l~~l~~~~~~D~ViIDt~G-r~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~ 201 (270)
T PRK06731 131 FEVIAVRDEAAMTRALTYFKEEARVDYILIDTAG-KNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDM 201 (270)
T ss_pred ceEEecCCHHHHHHHHHHHHhcCCCCEEEEECCC-CCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHHH
Confidence 11111 2455554444321123468999999997 443 444454544444444566678889999865543
No 212
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.69 E-value=0.013 Score=66.31 Aligned_cols=129 Identities=19% Similarity=0.190 Sum_probs=75.4
Q ss_pred HhCCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCCEEeEEeeccccCCC
Q 002552 295 AENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLGETVGYQIRLESKRSA 374 (908)
Q Consensus 295 ~~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~~~~~~~g~~vg~~~~~~~~~~~ 374 (908)
..++.+.++||||+||||.+..+......... .....++..-..|..+.+....+++.++...
T Consensus 189 ~~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~-~~~v~~i~~d~~rigalEQL~~~a~ilGvp~---------------- 251 (420)
T PRK14721 189 EQGGVYALIGPTGVGKTTTTAKLAARAVIRHG-ADKVALLTTDSYRIGGHEQLRIYGKLLGVSV---------------- 251 (420)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcC-CCeEEEEecCCcchhHHHHHHHHHHHcCCce----------------
Confidence 46789999999999999988766554332211 1222334444557777766666666554321
Q ss_pred CCcEEEEchHHHHHHHhcCCCCCcceEEEEechhccchhhHHHHHHHHHHCcc-CCCCcEEEecccCChHHHHh
Q 002552 375 QTRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPR-RPDLRLILMSATINADLFSK 447 (908)
Q Consensus 375 ~~~Iiv~T~g~Ll~~l~~~~~l~~~~~iIiDEaHeR~~~~d~ll~~lk~~~~~-~~~~qiIlmSAT~~~~~~~~ 447 (908)
..+-++.-+...+. .+.+.++++||.+- |......+...++.+... .+.-.++++|||...+.+.+
T Consensus 252 ---~~v~~~~dl~~al~---~l~~~d~VLIDTaG-rsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~ 318 (420)
T PRK14721 252 ---RSIKDIADLQLMLH---ELRGKHMVLIDTVG-MSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDE 318 (420)
T ss_pred ---ecCCCHHHHHHHHH---HhcCCCEEEecCCC-CCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHH
Confidence 11122333333332 35778999999986 443333344455555433 34456788999987665443
No 213
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=96.61 E-value=0.058 Score=63.47 Aligned_cols=141 Identities=18% Similarity=0.194 Sum_probs=88.5
Q ss_pred hCCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCC--------CCCCEEeEE--
Q 002552 296 ENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGE--------NLGETVGYQ-- 365 (908)
Q Consensus 296 ~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~~~~~--------~~g~~vg~~-- 365 (908)
+.+-.++.+|=|.|||+.+-+.+...+.. . +.+|+|++|...-+.++.+++...+.. ..+..+...
T Consensus 186 kq~~tV~taPRqrGKS~iVgi~l~~La~f--~--Gi~IlvTAH~~~ts~evF~rv~~~le~lg~~~~fp~~~~iv~vkgg 261 (752)
T PHA03333 186 GKCYTAATVPRRCGKTTIMAIILAAMISF--L--EIDIVVQAQRKTMCLTLYNRVETVVHAYQHKPWFPEEFKIVTLKGT 261 (752)
T ss_pred hhcceEEEeccCCCcHHHHHHHHHHHHHh--c--CCeEEEECCChhhHHHHHHHHHHHHHHhccccccCCCceEEEeeCC
Confidence 45678889999999998887666544321 1 358999999999999999887766531 111112111
Q ss_pred ---eeccccC--C-CCCcEEEEchHHHHHHHhcCC-CCCcceEEEEechhccchhhHHHHHHHHHHCccCCCCcEEEecc
Q 002552 366 ---IRLESKR--S-AQTRLLFCTTGVLLRQLVEDP-DLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILMSA 438 (908)
Q Consensus 366 ---~~~~~~~--~-~~~~Iiv~T~g~Ll~~l~~~~-~l~~~~~iIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiIlmSA 438 (908)
+.+.... . .++.|.|++.. .+. .-..+++||||||+. +..+.+..++-.+.. .+-++|++|.
T Consensus 262 ~E~I~f~~p~gak~G~sti~F~Ars-------~~s~RG~~~DLLIVDEAAf--I~~~~l~aIlP~l~~--~~~k~IiISS 330 (752)
T PHA03333 262 DENLEYISDPAAKEGKTTAHFLASS-------PNAARGQNPDLVIVDEAAF--VNPGALLSVLPLMAV--KGTKQIHISS 330 (752)
T ss_pred eeEEEEecCcccccCcceeEEeccc-------CCCcCCCCCCEEEEECccc--CCHHHHHHHHHHHcc--CCCceEEEeC
Confidence 1111100 0 11455565433 111 223578999999996 455666665555544 3578999999
Q ss_pred cCChHHHHhhhCC
Q 002552 439 TINADLFSKYFGN 451 (908)
Q Consensus 439 T~~~~~~~~~f~~ 451 (908)
+-+.+.+..++++
T Consensus 331 ~~~~~s~tS~L~n 343 (752)
T PHA03333 331 PVDADSWISRVGE 343 (752)
T ss_pred CCCcchHHHHhhh
Confidence 9888877776655
No 214
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=96.60 E-value=0.0048 Score=74.29 Aligned_cols=67 Identities=18% Similarity=0.265 Sum_probs=54.6
Q ss_pred CchHHHHHHHHHHHhC-CeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHH
Q 002552 282 PAFKMKAEFLKAVAEN-QVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSE 353 (908)
Q Consensus 282 pi~~~Q~~~i~~i~~~-~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~~ 353 (908)
.+.+.|.+++..++.+ ..++|.||+|+|||+.+...+.+... . +.+|+|+.||..++.++.+++.+.
T Consensus 157 ~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~~-~----g~~VLv~a~sn~Avd~l~e~l~~~ 224 (637)
T TIGR00376 157 NLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLVK-R----GLRVLVTAPSNIAVDNLLERLALC 224 (637)
T ss_pred CCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHHH-c----CCCEEEEcCcHHHHHHHHHHHHhC
Confidence 4567899999998876 78999999999999877766655432 1 348999999999999999998763
No 215
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.54 E-value=0.0047 Score=58.43 Aligned_cols=24 Identities=33% Similarity=0.537 Sum_probs=19.2
Q ss_pred CCeEEEEecCCCCccchHHHHHHH
Q 002552 297 NQVLVVSGETGCGKTTQLPQFILE 320 (908)
Q Consensus 297 ~~~vii~a~TGSGKTt~~~~~il~ 320 (908)
++.+++.||+|||||+.+...+..
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~ 25 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARE 25 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhc
Confidence 578999999999999876655443
No 216
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=96.51 E-value=0.013 Score=69.90 Aligned_cols=50 Identities=24% Similarity=0.402 Sum_probs=29.7
Q ss_pred HHHHHhcCCCCCcceEEEEechhccchhhHHHHHHHHHHCccCCCCcEEEec
Q 002552 386 LLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILMS 437 (908)
Q Consensus 386 Ll~~l~~~~~l~~~~~iIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiIlmS 437 (908)
+++.+...+.-.+++++||||+|. +..+-...+||.+..-.++.++|+.+
T Consensus 107 LIe~a~~~P~~gr~KVIIIDEah~--LT~~A~NALLKtLEEPP~~v~FILaT 156 (830)
T PRK07003 107 LLERAVYAPVDARFKVYMIDEVHM--LTNHAFNAMLKTLEEPPPHVKFILAT 156 (830)
T ss_pred HHHHHHhccccCCceEEEEeChhh--CCHHHHHHHHHHHHhcCCCeEEEEEE
Confidence 334433334446789999999994 34444556677655444445555544
No 217
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.45 E-value=0.026 Score=59.50 Aligned_cols=115 Identities=20% Similarity=0.272 Sum_probs=65.2
Q ss_pred CeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCCEEeEEeeccccCCCCCc
Q 002552 298 QVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLGETVGYQIRLESKRSAQTR 377 (908)
Q Consensus 298 ~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~~~~~~~g~~vg~~~~~~~~~~~~~~ 377 (908)
..+++.|++|+|||+.+...+.+ +... +..++++ +...+ ..++...+.. ..
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~-l~~~----g~~v~~i-t~~~l----~~~l~~~~~~-------------------~~ 150 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNE-LLLR----GKSVLII-TVADI----MSAMKDTFSN-------------------SE 150 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH-HHhc----CCeEEEE-EHHHH----HHHHHHHHhh-------------------cc
Confidence 57999999999999755544433 3221 2345554 32233 2333222110 00
Q ss_pred EEEEchHHHHHHHhcCCCCCcceEEEEechhccchhhHHHHHHHHHHCcc-CCCCcEEEecccCChHHHHhhhCC
Q 002552 378 LLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPR-RPDLRLILMSATINADLFSKYFGN 451 (908)
Q Consensus 378 Iiv~T~g~Ll~~l~~~~~l~~~~~iIiDEaHeR~~~~d~ll~~lk~~~~~-~~~~qiIlmSAT~~~~~~~~~f~~ 451 (908)
.+...+++. +.++++|||||++.- ..+++...++-.++.. ..+.+-+++|.-++.+.+.+.+++
T Consensus 151 ---~~~~~~l~~------l~~~dlLvIDDig~~-~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl~~~~l~~~~g~ 215 (244)
T PRK07952 151 ---TSEEQLLND------LSNVDLLVIDEIGVQ-TESRYEKVIINQIVDRRSSSKRPTGMLTNSNMEEMTKLLGE 215 (244)
T ss_pred ---ccHHHHHHH------hccCCEEEEeCCCCC-CCCHHHHHHHHHHHHHHHhCCCCEEEeCCCCHHHHHHHhCh
Confidence 133344444 367999999999943 2555555455444432 233456777777788878777754
No 218
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=96.39 E-value=0.0077 Score=68.94 Aligned_cols=66 Identities=15% Similarity=0.259 Sum_probs=54.1
Q ss_pred chHHHHHHHHHHHhCCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHH
Q 002552 283 AFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSS 352 (908)
Q Consensus 283 i~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~ 352 (908)
+..-|..++++++++...+|+||+|+|||....-.+++.+.. ....|||.+|..+++.|+|+.+.+
T Consensus 411 LN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVyhl~~~----~~~~VLvcApSNiAVDqLaeKIh~ 476 (935)
T KOG1802|consen 411 LNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVYHLARQ----HAGPVLVCAPSNIAVDQLAEKIHK 476 (935)
T ss_pred hchHHHHHHHHHHcCCceeeecCCCCCceehhHHHHHHHHHh----cCCceEEEcccchhHHHHHHHHHh
Confidence 457899999999999999999999999996655555544322 245799999999999999988855
No 219
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=96.35 E-value=0.015 Score=62.65 Aligned_cols=22 Identities=32% Similarity=0.714 Sum_probs=17.6
Q ss_pred CCeEEEEecCCCCccchHHHHH
Q 002552 297 NQVLVVSGETGCGKTTQLPQFI 318 (908)
Q Consensus 297 ~~~vii~a~TGSGKTt~~~~~i 318 (908)
...++++||+|+||||.+-.+.
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~ 64 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLL 64 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHH
Confidence 3478999999999998766553
No 220
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=96.35 E-value=0.019 Score=69.43 Aligned_cols=114 Identities=18% Similarity=0.250 Sum_probs=91.5
Q ss_pred cCCCcEEEecCCHHHHHHHHHHHHhcccCCCCCceEEEeccCCCChHhHHhhhCCCCCCCc--EEEEeccccccccCCCC
Q 002552 552 EGDGAILVFLTGWNDISKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKR--KIVLATNIAESSITIDD 629 (908)
Q Consensus 552 ~~~g~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lH~~l~~~er~~v~~~f~~g~~--kIlvaT~iae~GidIp~ 629 (908)
..+.++|||..-.+..+-|..+|.- .++..+-|.|...-++|+...+.|....+ ..|++|--...|||+-+
T Consensus 1274 ~eghRvLIfTQMtkmLDVLeqFLny-------HgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSggvGiNLtg 1346 (1958)
T KOG0391|consen 1274 SEGHRVLIFTQMTKMLDVLEQFLNY-------HGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGGVGINLTG 1346 (1958)
T ss_pred hcCceEEehhHHHHHHHHHHHHHhh-------cceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCcccccccc
Confidence 3467899999888888888888876 56777889999999999999999977643 68999999999999999
Q ss_pred eEEEEeCCCccceeeccccCccccccccccHhhHHHhccccCCCCCcEEEEecChhhH
Q 002552 630 VVYVVDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRVQPGVCYKLYPRIIH 687 (908)
Q Consensus 630 v~~VId~g~~k~~~yd~~~~~~~l~~~~iS~~~~~QR~GRaGR~~~G~~~~l~~~~~~ 687 (908)
.+.||.||--.+...| +.+.-|.-|.|++++=+.|||+++..-
T Consensus 1347 ADTVvFYDsDwNPtMD---------------aQAQDrChRIGqtRDVHIYRLISe~TI 1389 (1958)
T KOG0391|consen 1347 ADTVVFYDSDWNPTMD---------------AQAQDRCHRIGQTRDVHIYRLISERTI 1389 (1958)
T ss_pred CceEEEecCCCCchhh---------------hHHHHHHHhhcCccceEEEEeeccchH
Confidence 9999987644433322 356667777778889999999997543
No 221
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.29 E-value=0.017 Score=63.74 Aligned_cols=116 Identities=19% Similarity=0.215 Sum_probs=58.7
Q ss_pred hCCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCCEEeEEeeccccCCCC
Q 002552 296 ENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLGETVGYQIRLESKRSAQ 375 (908)
Q Consensus 296 ~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~~~~~~~g~~vg~~~~~~~~~~~~ 375 (908)
.++++++.|+||+|||+.+. .|...+... +..|+++ +...+...+.. .... ..
T Consensus 182 ~~~~Lll~G~~GtGKThLa~-aIa~~l~~~----g~~V~y~-t~~~l~~~l~~----~~~~-------------~~---- 234 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLSN-CIAKELLDR----GKSVIYR-TADELIEILRE----IRFN-------------ND---- 234 (329)
T ss_pred cCCcEEEECCCCCcHHHHHH-HHHHHHHHC----CCeEEEE-EHHHHHHHHHH----HHhc-------------cc----
Confidence 45889999999999996443 333333332 2355553 33344433322 1000 00
Q ss_pred CcEEEEchHHHHHHHhcCCCCCcceEEEEechhccchhhHHHHHHHHHHCccC-CCCcEEEecccCChHHHHhhhC
Q 002552 376 TRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRR-PDLRLILMSATINADLFSKYFG 450 (908)
Q Consensus 376 ~~Iiv~T~g~Ll~~l~~~~~l~~~~~iIiDEaHeR~~~~d~ll~~lk~~~~~~-~~~qiIlmSAT~~~~~~~~~f~ 450 (908)
.. ... .++ .+.++++||||+++. -..+++....+-.++..+ ..-+-+++|..++.+.+.+.++
T Consensus 235 ~~----~~~-~~~------~l~~~DLLIIDDlG~-e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl~~~el~~~~~ 298 (329)
T PRK06835 235 KE----LEE-VYD------LLINCDLLIIDDLGT-EKITEFSKSELFNLINKRLLRQKKMIISTNLSLEELLKTYS 298 (329)
T ss_pred hh----HHH-HHH------HhccCCEEEEeccCC-CCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHh
Confidence 00 000 122 235789999999983 233443333333333222 1123466777777776665543
No 222
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=96.25 E-value=0.026 Score=70.93 Aligned_cols=126 Identities=16% Similarity=0.159 Sum_probs=81.7
Q ss_pred cCCCchHHHHHHHHHHH-hCCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCC
Q 002552 279 EKLPAFKMKAEFLKAVA-ENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGEN 357 (908)
Q Consensus 279 ~~lpi~~~Q~~~i~~i~-~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~~~~~~ 357 (908)
....+.+-|.+++..+. .++.++|+|..|+||||.+-.. .+.+.. .+.+|+.+.||--+|..+. +..+..
T Consensus 378 ~~~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l~~~-~~~~e~----~G~~V~g~ApTgkAA~~L~----e~~Gi~ 448 (1102)
T PRK13826 378 RHARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMMKAA-REAWEA----AGYRVVGGALAGKAAEGLE----KEAGIQ 448 (1102)
T ss_pred cCCCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHHHHH-HHHHHH----cCCeEEEEcCcHHHHHHHH----HhhCCC
Confidence 34678899999999875 4789999999999999766543 332221 2457888999988775553 322221
Q ss_pred CCCEEeEEeeccccCCCCCcEEEEchHHHHHHHhcC-CCCCcceEEEEechhccchhhHHHHHHHHHHCccCCCCcEEEe
Q 002552 358 LGETVGYQIRLESKRSAQTRLLFCTTGVLLRQLVED-PDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILM 436 (908)
Q Consensus 358 ~g~~vg~~~~~~~~~~~~~~Iiv~T~g~Ll~~l~~~-~~l~~~~~iIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiIlm 436 (908)
-.|-..++..+..+ ..+..-++|||||+. |+++..+..+++.+.. ...|+|++
T Consensus 449 ----------------------a~TIas~ll~~~~~~~~l~~~~vlVIDEAs--Mv~~~~m~~Ll~~~~~--~garvVLV 502 (1102)
T PRK13826 449 ----------------------SRTLSSWELRWNQGRDQLDNKTVFVLDEAG--MVASRQMALFVEAVTR--AGAKLVLV 502 (1102)
T ss_pred ----------------------eeeHHHHHhhhccCccCCCCCcEEEEECcc--cCCHHHHHHHHHHHHh--cCCEEEEE
Confidence 11323332112122 256778899999998 3777777777766532 35788877
Q ss_pred ccc
Q 002552 437 SAT 439 (908)
Q Consensus 437 SAT 439 (908)
-=+
T Consensus 503 GD~ 505 (1102)
T PRK13826 503 GDP 505 (1102)
T ss_pred CCH
Confidence 533
No 223
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=96.25 E-value=0.028 Score=62.68 Aligned_cols=140 Identities=18% Similarity=0.164 Sum_probs=67.0
Q ss_pred HHHHHHHHhCC---eEEEEecCCCCccchHHHHHHHHHHhccCC-CCcEEEEE-cccHHHHHHHHHHHHHHhCCCCCCEE
Q 002552 288 AEFLKAVAENQ---VLVVSGETGCGKTTQLPQFILEEELSSLRG-ADCNIICT-QPRRISAISVAARVSSERGENLGETV 362 (908)
Q Consensus 288 ~~~i~~i~~~~---~vii~a~TGSGKTt~~~~~il~~~~~~~~~-~~~~ilv~-~P~r~la~qi~~rv~~~~~~~~g~~v 362 (908)
..+..++.+++ -++++||+|+|||+.+-.++. .++..... ..+..+.. ......+ +.+.. +..... .
T Consensus 33 ~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~-~Llc~~~~~~~~~~~~~~~~~c~~c----~~i~~--~~hPdl-~ 104 (351)
T PRK09112 33 AFLAQAYREGKLHHALLFEGPEGIGKATLAFHLAN-HILSHPDPAEAPETLADPDPASPVW----RQIAQ--GAHPNL-L 104 (351)
T ss_pred HHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHH-HHcCCCccccCccccCCCCCCCHHH----HHHHc--CCCCCE-E
Confidence 44555666676 599999999999987665443 33321100 00111110 0122222 22211 111111 1
Q ss_pred eEEeeccccC-CCCCcEEEEchHHHHHHHhcCCCCCcceEEEEechhccchhhHHHHHHHHHHCccCCCCcEEEec
Q 002552 363 GYQIRLESKR-SAQTRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILMS 437 (908)
Q Consensus 363 g~~~~~~~~~-~~~~~Iiv~T~g~Ll~~l~~~~~l~~~~~iIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiIlmS 437 (908)
-.....+... .....|.|----.+.+.+...+....+.+|||||||. ++..-...++|.+..-.+...+|++|
T Consensus 105 ~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~--l~~~aanaLLk~LEEpp~~~~fiLit 178 (351)
T PRK09112 105 HITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADD--MNRNAANAILKTLEEPPARALFILIS 178 (351)
T ss_pred EeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhh--cCHHHHHHHHHHHhcCCCCceEEEEE
Confidence 0000001110 0112333322223455554445557889999999995 45555666777776544445555554
No 224
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.23 E-value=0.046 Score=62.97 Aligned_cols=126 Identities=22% Similarity=0.227 Sum_probs=70.6
Q ss_pred hCCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEE-cccHHHHHHHHHHHHHHhCCCCCCEEeEEeeccccCCC
Q 002552 296 ENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICT-QPRRISAISVAARVSSERGENLGETVGYQIRLESKRSA 374 (908)
Q Consensus 296 ~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~-~P~r~la~qi~~rv~~~~~~~~g~~vg~~~~~~~~~~~ 374 (908)
.+++++++||||+||||.+..+........ +.....++. -+-|..|.+..+.+++.++....
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~--G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~--------------- 317 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAARCVMRH--GASKVALLTTDSYRIGGHEQLRIYGKILGVPVH--------------- 317 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHHHHHHhc--CCCeEEEEeCCccchhHHHHHHHHHHHhCCCee---------------
Confidence 468999999999999998877765443322 211222333 45577777666666666553210
Q ss_pred CCcEEEEchHHHHHHHhcCCCCCcceEEEEechhccchhhHHHHHHHHHHCcc-CCCCcEEEecccCChHHHH
Q 002552 375 QTRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPR-RPDLRLILMSATINADLFS 446 (908)
Q Consensus 375 ~~~Iiv~T~g~Ll~~l~~~~~l~~~~~iIiDEaHeR~~~~d~ll~~lk~~~~~-~~~~qiIlmSAT~~~~~~~ 446 (908)
.+-++.-+...+ ..+.++.+++||.+= |......+...+..+... .|.-.++.++||.....+.
T Consensus 318 ----~~~~~~Dl~~aL---~~L~d~d~VLIDTaG-r~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~~~l~ 382 (484)
T PRK06995 318 ----AVKDAADLRLAL---SELRNKHIVLIDTIG-MSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHGDTLN 382 (484)
T ss_pred ----ccCCchhHHHHH---HhccCCCeEEeCCCC-cChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcHHHHH
Confidence 001111122222 145677899999987 543322222333333222 1444788899998766543
No 225
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.17 E-value=0.016 Score=70.36 Aligned_cols=42 Identities=19% Similarity=0.362 Sum_probs=28.9
Q ss_pred CCCCCcceEEEEechhccchhhHHHHHHHHHHCccCCCCcEEEe
Q 002552 393 DPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILM 436 (908)
Q Consensus 393 ~~~l~~~~~iIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiIlm 436 (908)
.+.-.++.++||||||. +..+....+||.+..-.+..++|+.
T Consensus 114 ~P~~gk~KViIIDEAh~--LT~eAqNALLKtLEEPP~~vrFILa 155 (944)
T PRK14949 114 RPSRGRFKVYLIDEVHM--LSRSSFNALLKTLEEPPEHVKFLLA 155 (944)
T ss_pred hhhcCCcEEEEEechHh--cCHHHHHHHHHHHhccCCCeEEEEE
Confidence 33346789999999994 4566667777777655555666664
No 226
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=96.16 E-value=0.0013 Score=65.10 Aligned_cols=117 Identities=22% Similarity=0.283 Sum_probs=55.3
Q ss_pred EEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCCEEeEEeeccc-------cCC
Q 002552 301 VVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLGETVGYQIRLES-------KRS 373 (908)
Q Consensus 301 ii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~~~~~~~g~~vg~~~~~~~-------~~~ 373 (908)
||+|+-|-|||+++-+.+..... . ...+|+|++|+.+.+..+.+.+...+.. .||...... ...
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~---~-~~~~I~vtAP~~~~~~~lf~~~~~~l~~-----~~~~~~~~~~~~~~~~~~~ 71 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQ---K-GKIRILVTAPSPENVQTLFEFAEKGLKA-----LGYKEEKKKRIGQIIKLRF 71 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS---------EEEE-SS--S-HHHHHCC------------------------------
T ss_pred CccCCCCCCHHHHHHHHHHHHHH---h-cCceEEEecCCHHHHHHHHHHHHhhccc-----ccccccccccccccccccc
Confidence 58999999999877665543321 1 1258999999999998887665443221 222211000 112
Q ss_pred CCCcEEEEchHHHHHHHhcCCCCCcceEEEEechhccchhhHHHHHHHHHHCccCCCCcEEEecccCC
Q 002552 374 AQTRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILMSATIN 441 (908)
Q Consensus 374 ~~~~Iiv~T~g~Ll~~l~~~~~l~~~~~iIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiIlmSAT~~ 441 (908)
.+..|.|..|..+...- ...++||||||=- +...++.. ++.. ...|+||.|++
T Consensus 72 ~~~~i~f~~Pd~l~~~~------~~~DlliVDEAAa--Ip~p~L~~----ll~~---~~~vv~stTi~ 124 (177)
T PF05127_consen 72 NKQRIEFVAPDELLAEK------PQADLLIVDEAAA--IPLPLLKQ----LLRR---FPRVVFSTTIH 124 (177)
T ss_dssp -CCC--B--HHHHCCT----------SCEEECTGGG--S-HHHHHH----HHCC---SSEEEEEEEBS
T ss_pred ccceEEEECCHHHHhCc------CCCCEEEEechhc--CCHHHHHH----HHhh---CCEEEEEeecc
Confidence 25678888887665432 2458999999973 44444443 3333 34678888874
No 227
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.16 E-value=0.08 Score=57.34 Aligned_cols=89 Identities=24% Similarity=0.254 Sum_probs=51.9
Q ss_pred hCCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCCEEeEEeeccccCCCC
Q 002552 296 ENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLGETVGYQIRLESKRSAQ 375 (908)
Q Consensus 296 ~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~~~~~~~g~~vg~~~~~~~~~~~~ 375 (908)
.+++++++||||+||||.+..++.......+ +....++-+-|.|..+.+.....+..++..+
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g-~~~V~li~~D~~r~~a~eql~~~~~~~~~p~----------------- 254 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHG-NKKVALITTDTYRIGAVEQLKTYAKILGVPV----------------- 254 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcC-CCeEEEEECCccchhHHHHHHHHHHHhCCce-----------------
Confidence 3568999999999999888776655432211 1233344444667666555454544433221
Q ss_pred CcEEEEchHHHHHHHhcCCCCCcceEEEEech
Q 002552 376 TRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEI 407 (908)
Q Consensus 376 ~~Iiv~T~g~Ll~~l~~~~~l~~~~~iIiDEa 407 (908)
....++.-+.+.+. .+.++++||||.+
T Consensus 255 --~~~~~~~~l~~~l~---~~~~~d~vliDt~ 281 (282)
T TIGR03499 255 --KVARDPKELRKALD---RLRDKDLILIDTA 281 (282)
T ss_pred --eccCCHHHHHHHHH---HccCCCEEEEeCC
Confidence 01124555555554 3456899999975
No 228
>PTZ00146 fibrillarin; Provisional
Probab=96.09 E-value=0.0094 Score=63.73 Aligned_cols=12 Identities=17% Similarity=0.265 Sum_probs=8.2
Q ss_pred CcceEEEEechh
Q 002552 397 SCVSHLLVDEIH 408 (908)
Q Consensus 397 ~~~~~iIiDEaH 408 (908)
..+++|+.|=++
T Consensus 201 ~~vDvV~~Dva~ 212 (293)
T PTZ00146 201 PMVDVIFADVAQ 212 (293)
T ss_pred CCCCEEEEeCCC
Confidence 357888887654
No 229
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=96.00 E-value=0.029 Score=69.19 Aligned_cols=43 Identities=19% Similarity=0.263 Sum_probs=28.9
Q ss_pred CCCCCcceEEEEechhccchhhHHHHHHHHHHCccCCCCcEEEec
Q 002552 393 DPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILMS 437 (908)
Q Consensus 393 ~~~l~~~~~iIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiIlmS 437 (908)
.+...+++++||||+|. +..+-...+||.+........+|+.+
T Consensus 115 ~p~~~~~KV~IIDEad~--lt~~a~NaLLK~LEEpP~~~~fIl~t 157 (824)
T PRK07764 115 APAESRYKIFIIDEAHM--VTPQGFNALLKIVEEPPEHLKFIFAT 157 (824)
T ss_pred chhcCCceEEEEechhh--cCHHHHHHHHHHHhCCCCCeEEEEEe
Confidence 34557899999999995 44555566677665555555566554
No 230
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=95.97 E-value=0.041 Score=65.23 Aligned_cols=52 Identities=15% Similarity=0.144 Sum_probs=39.1
Q ss_pred CcEEEEeccccccccCCCCeEEEEeCCCccceeeccccCccccccccccHhhHHHhccccCCC---CCcEEEE
Q 002552 611 KRKIVLATNIAESSITIDDVVYVVDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRV---QPGVCYK 680 (908)
Q Consensus 611 ~~kIlvaT~iae~GidIp~v~~VId~g~~k~~~yd~~~~~~~l~~~~iS~~~~~QR~GRaGR~---~~G~~~~ 680 (908)
-++.|++--++-.|-|=|+|=.+.----.. |..+=.|-+||.-|- ..|.-++
T Consensus 483 plRFIFS~waLrEGWDNPNVFtIckL~~S~------------------SeiSK~QeVGRGLRLaVNe~G~RV~ 537 (985)
T COG3587 483 PLRFIFSKWALREGWDNPNVFTICKLRSSG------------------SEISKLQEVGRGLRLAVNENGERVT 537 (985)
T ss_pred cceeeeehhHHhhcCCCCCeeEEEEecCCC------------------cchHHHHHhccceeeeeccccceec
Confidence 489999999999999999986554311111 455778999999997 5677665
No 231
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.96 E-value=0.054 Score=61.94 Aligned_cols=126 Identities=18% Similarity=0.262 Sum_probs=67.9
Q ss_pred CCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCCEEeEEeeccccCCCCC
Q 002552 297 NQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLGETVGYQIRLESKRSAQT 376 (908)
Q Consensus 297 ~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~~~~~~~g~~vg~~~~~~~~~~~~~ 376 (908)
..+++++|++|+||||.+..+.... .. .+..+.++..=+.|..|.+..+.++...+..+ .+ .. . ..
T Consensus 95 p~vI~lvG~~GsGKTTtaakLA~~L-~~--~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~---~~--~~---~---~~ 160 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAKLARYF-KK--KGLKVGLVAADTYRPAAYDQLKQLAEKIGVPF---YG--DP---D---NK 160 (437)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHH-HH--cCCeEEEecCCCCCHHHHHHHHHHHHHcCCcE---Ee--cC---C---cc
Confidence 4588999999999998877665432 22 23333344444556666655555555444321 00 00 0 00
Q ss_pred cEEEEchHHHHHHHhcCCCCCcceEEEEechhccchhhHHHHHHHHHHCccCCCCcEEEecccCChH
Q 002552 377 RLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILMSATINAD 443 (908)
Q Consensus 377 ~Iiv~T~g~Ll~~l~~~~~l~~~~~iIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiIlmSAT~~~~ 443 (908)
+ ....+.+.+.. +..+++||||.+-....+.+.+..+........|+.-++.++||...+
T Consensus 161 d----~~~i~~~al~~---~~~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq~ 220 (437)
T PRK00771 161 D----AVEIAKEGLEK---FKKADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQ 220 (437)
T ss_pred C----HHHHHHHHHHH---hhcCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccHH
Confidence 0 11223333332 234589999999622244444433333322345777888899987543
No 232
>PF13173 AAA_14: AAA domain
Probab=95.92 E-value=0.036 Score=52.28 Aligned_cols=26 Identities=31% Similarity=0.588 Sum_probs=21.7
Q ss_pred hCCeEEEEecCCCCccchHHHHHHHH
Q 002552 296 ENQVLVVSGETGCGKTTQLPQFILEE 321 (908)
Q Consensus 296 ~~~~vii~a~TGSGKTt~~~~~il~~ 321 (908)
+++.++|.||.|+||||.+-+++-+.
T Consensus 1 n~~~~~l~G~R~vGKTtll~~~~~~~ 26 (128)
T PF13173_consen 1 NRKIIILTGPRGVGKTTLLKQLAKDL 26 (128)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999887776554
No 233
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=95.88 E-value=0.027 Score=67.22 Aligned_cols=49 Identities=20% Similarity=0.345 Sum_probs=31.4
Q ss_pred HHHHHhcCCCCCcceEEEEechhccchhhHHHHHHHHHHCccCCCCcEEEe
Q 002552 386 LLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILM 436 (908)
Q Consensus 386 Ll~~l~~~~~l~~~~~iIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiIlm 436 (908)
|++.+...+.-..+.++||||||. +..+-.-.+||.+..-.+..++|+.
T Consensus 107 li~~~~~~p~~g~~KV~IIDEah~--Ls~~a~NALLKtLEEPp~~v~FIL~ 155 (647)
T PRK07994 107 LLDNVQYAPARGRFKVYLIDEVHM--LSRHSFNALLKTLEEPPEHVKFLLA 155 (647)
T ss_pred HHHHHHhhhhcCCCEEEEEechHh--CCHHHHHHHHHHHHcCCCCeEEEEe
Confidence 334444344456899999999994 4555667777766554445555554
No 234
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=95.87 E-value=0.096 Score=63.26 Aligned_cols=20 Identities=40% Similarity=0.634 Sum_probs=15.6
Q ss_pred eEEEEecCCCCccchHHHHH
Q 002552 299 VLVVSGETGCGKTTQLPQFI 318 (908)
Q Consensus 299 ~vii~a~TGSGKTt~~~~~i 318 (908)
.+.|.|+||+|||+.+-..+
T Consensus 783 vLYIyG~PGTGKTATVK~VL 802 (1164)
T PTZ00112 783 ILYISGMPGTGKTATVYSVI 802 (1164)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 45699999999997665543
No 235
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.86 E-value=0.07 Score=58.65 Aligned_cols=126 Identities=21% Similarity=0.270 Sum_probs=66.2
Q ss_pred hCCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEE-EEc-ccHHHHHHHHHHHHHHhCCCCCCEEeEEeeccccCC
Q 002552 296 ENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNII-CTQ-PRRISAISVAARVSSERGENLGETVGYQIRLESKRS 373 (908)
Q Consensus 296 ~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~il-v~~-P~r~la~qi~~rv~~~~~~~~g~~vg~~~~~~~~~~ 373 (908)
.+++++++||+|+||||.+........ ..+ .+|+ +.. +.|..|.+.....+...+. ++..... .
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~---~~g--~~V~Li~~D~~r~~a~eql~~~a~~~~i------~~~~~~~-~-- 178 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYK---AQG--KKVLLAAGDTFRAAAIEQLQVWGERVGV------PVIAQKE-G-- 178 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH---hcC--CeEEEEecCccchhhHHHHHHHHHHcCc------eEEEeCC-C--
Confidence 467899999999999987766554332 122 2343 333 4466655444444443331 2111100 0
Q ss_pred CCCcEEEEchH-HHHHHHhcCCCCCcceEEEEechhccchhhHHHHHHHHHH-------CccCCCCcEEEecccCChHH
Q 002552 374 AQTRLLFCTTG-VLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDL-------LPRRPDLRLILMSATINADL 444 (908)
Q Consensus 374 ~~~~Iiv~T~g-~Ll~~l~~~~~l~~~~~iIiDEaHeR~~~~d~ll~~lk~~-------~~~~~~~qiIlmSAT~~~~~ 444 (908)
. .|. ...+.+.. ....++++||||=+- |....+-+..-++.+ ....|+-.++.++||...+.
T Consensus 179 --~-----dpa~~v~~~l~~-~~~~~~D~ViIDTaG-r~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~ 248 (318)
T PRK10416 179 --A-----DPASVAFDAIQA-AKARGIDVLIIDTAG-RLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNA 248 (318)
T ss_pred --C-----CHHHHHHHHHHH-HHhCCCCEEEEeCCC-CCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHH
Confidence 0 111 11111111 023679999999998 544333333333332 23456677899999985543
No 236
>PRK11054 helD DNA helicase IV; Provisional
Probab=95.79 E-value=0.041 Score=66.76 Aligned_cols=116 Identities=18% Similarity=0.093 Sum_probs=77.0
Q ss_pred HHHHHHhhcCCCchHHHHHHHHHHHhCCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHH
Q 002552 271 GKAMLSFREKLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARV 350 (908)
Q Consensus 271 ~~~~~~~r~~lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv 350 (908)
+......-..-|+++.|.+++.. ....++|.|..|||||+.+.--+...+.. ....+.+|+++..+|.+|..+.+|+
T Consensus 185 ~~~~f~~~e~~~L~~~Q~~av~~--~~~~~lV~agaGSGKT~vl~~r~ayLl~~-~~~~~~~IL~ltft~~AA~em~eRL 261 (684)
T PRK11054 185 YADFFSQVESSPLNPSQARAVVN--GEDSLLVLAGAGSGKTSVLVARAGWLLAR-GQAQPEQILLLAFGRQAAEEMDERI 261 (684)
T ss_pred HHHHHHhccCCCCCHHHHHHHhC--CCCCeEEEEeCCCCHHHHHHHHHHHHHHh-CCCCHHHeEEEeccHHHHHHHHHHH
Confidence 45555555667899999988764 34567999999999998766554433322 2223458999999999999999999
Q ss_pred HHHhCCCCCCEEeEEeeccccCCCCCcEEEEchHHHHHHH-hcCC-CCCcceEEEEechh
Q 002552 351 SSERGENLGETVGYQIRLESKRSAQTRLLFCTTGVLLRQL-VEDP-DLSCVSHLLVDEIH 408 (908)
Q Consensus 351 ~~~~~~~~g~~vg~~~~~~~~~~~~~~Iiv~T~g~Ll~~l-~~~~-~l~~~~~iIiDEaH 408 (908)
...++ ...|.+.|-..|-..+ .... ....++.+..|+-.
T Consensus 262 ~~~lg-------------------~~~v~v~TFHSlal~Il~~~~~~~p~~s~~~~d~~~ 302 (684)
T PRK11054 262 RERLG-------------------TEDITARTFHALALHIIQQGSKKVPVISKLENDSKA 302 (684)
T ss_pred HHhcC-------------------CCCcEEEeHHHHHHHHHHHhhhcCCCcCccccchHH
Confidence 77653 1357788876554333 3211 22344555667654
No 237
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=95.78 E-value=0.044 Score=58.64 Aligned_cols=119 Identities=18% Similarity=0.149 Sum_probs=65.0
Q ss_pred CeEEEEecCCCCccchHHHHHHHHHHhccC-C-CCcEEEEEcccHHHHHHHHHHHHHHhCCCCCCEEeEEeeccccCCCC
Q 002552 298 QVLVVSGETGCGKTTQLPQFILEEELSSLR-G-ADCNIICTQPRRISAISVAARVSSERGENLGETVGYQIRLESKRSAQ 375 (908)
Q Consensus 298 ~~vii~a~TGSGKTt~~~~~il~~~~~~~~-~-~~~~ilv~~P~r~la~qi~~rv~~~~~~~~g~~vg~~~~~~~~~~~~ 375 (908)
.+++|+|+|+.|||+.+-.|.-.+...... . .-+.+++-.|...-....+..+...++......
T Consensus 62 p~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~-------------- 127 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPR-------------- 127 (302)
T ss_pred CceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCC--------------
Confidence 589999999999998777666544322111 1 123445556777767777777777776543210
Q ss_pred CcEEEEchHHHHHHHhcCCCCCcceEEEEechhcc----chhhHHHHHHHHHHCccCCCCcEEEe
Q 002552 376 TRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHER----GMNEDFLLIILRDLLPRRPDLRLILM 436 (908)
Q Consensus 376 ~~Iiv~T~g~Ll~~l~~~~~l~~~~~iIiDEaHeR----~~~~d~ll~~lk~~~~~~~~~qiIlm 436 (908)
..+--.+. ..++.|.. -++.+|||||+|.- ....--.+..+|.+.... ++-+|++
T Consensus 128 ~~~~~~~~-~~~~llr~----~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL-~ipiV~v 186 (302)
T PF05621_consen 128 DRVAKLEQ-QVLRLLRR----LGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNEL-QIPIVGV 186 (302)
T ss_pred CCHHHHHH-HHHHHHHH----cCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhcc-CCCeEEe
Confidence 00000011 11222221 36899999999961 122334455566664322 2344443
No 238
>PRK06893 DNA replication initiation factor; Validated
Probab=95.78 E-value=0.024 Score=59.47 Aligned_cols=48 Identities=17% Similarity=0.231 Sum_probs=27.2
Q ss_pred CCcceEEEEechhccchhhH---HHHHHHHHHCccCCCCcEEEecccCChHHH
Q 002552 396 LSCVSHLLVDEIHERGMNED---FLLIILRDLLPRRPDLRLILMSATINADLF 445 (908)
Q Consensus 396 l~~~~~iIiDEaHeR~~~~d---~ll~~lk~~~~~~~~~qiIlmSAT~~~~~~ 445 (908)
+.++++|||||+|....+.+ .+..++..+.. ...++|++|++..+..+
T Consensus 89 ~~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~--~~~~illits~~~p~~l 139 (229)
T PRK06893 89 LEQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKE--QGKTLLLISADCSPHAL 139 (229)
T ss_pred cccCCEEEEeChhhhcCChHHHHHHHHHHHHHHH--cCCcEEEEeCCCChHHc
Confidence 35778999999995322222 23333333322 12356788888765543
No 239
>PHA02533 17 large terminase protein; Provisional
Probab=95.78 E-value=0.097 Score=61.59 Aligned_cols=152 Identities=16% Similarity=0.097 Sum_probs=89.3
Q ss_pred cCCCchHHHHHHHHHHHhCCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCC
Q 002552 279 EKLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENL 358 (908)
Q Consensus 279 ~~lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~~~~~~~ 358 (908)
.++++.+.|..++..+..++-.++.-+=..|||+.+..+++...+.. .+..+++++|++.-|..++++++.......
T Consensus 56 ~Pf~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~~---~~~~v~i~A~~~~QA~~vF~~ik~~ie~~P 132 (534)
T PHA02533 56 IKVQMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCFN---KDKNVGILAHKASMAAEVLDRTKQAIELLP 132 (534)
T ss_pred eecCCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHhC---CCCEEEEEeCCHHHHHHHHHHHHHHHHhCH
Confidence 35788899999999887778788999999999988876666554432 245899999999999999988875432110
Q ss_pred C-CEEeEEe--eccccCCCCCcEEEEchHHHHHHHhcCCCCCcceEEEEechhccchhhHHHHHHHHHHCccCCCCcEEE
Q 002552 359 G-ETVGYQI--RLESKRSAQTRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLIL 435 (908)
Q Consensus 359 g-~~vg~~~--~~~~~~~~~~~Iiv~T~g~Ll~~l~~~~~l~~~~~iIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiIl 435 (908)
. ...+... +..-....++.|.+.|..- +.. .=.+..++|+||+|...-..++...+ ...+.....-++++
T Consensus 133 ~l~~~~i~~~~~~~I~l~NGS~I~~lss~~--~t~----rG~~~~~liiDE~a~~~~~~e~~~ai-~p~lasg~~~r~ii 205 (534)
T PHA02533 133 DFLQPGIVEWNKGSIELENGSKIGAYASSP--DAV----RGNSFAMIYIDECAFIPNFIDFWLAI-QPVISSGRSSKIII 205 (534)
T ss_pred HHhhcceeecCccEEEeCCCCEEEEEeCCC--Ccc----CCCCCceEEEeccccCCCHHHHHHHH-HHHHHcCCCceEEE
Confidence 0 0011000 0000012355665555321 111 11246689999999532122333332 22223223345667
Q ss_pred ecccC
Q 002552 436 MSATI 440 (908)
Q Consensus 436 mSAT~ 440 (908)
.|..-
T Consensus 206 iSTp~ 210 (534)
T PHA02533 206 TSTPN 210 (534)
T ss_pred EECCC
Confidence 66664
No 240
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=95.78 E-value=0.078 Score=59.46 Aligned_cols=144 Identities=19% Similarity=0.184 Sum_probs=71.9
Q ss_pred HHHHHHHHhCC---eEEEEecCCCCccchHHHHHHHHHHhccCCCC-----cEEEEEcccHHHHHHHHHHHHHHhCCCCC
Q 002552 288 AEFLKAVAENQ---VLVVSGETGCGKTTQLPQFILEEELSSLRGAD-----CNIICTQPRRISAISVAARVSSERGENLG 359 (908)
Q Consensus 288 ~~~i~~i~~~~---~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~-----~~ilv~~P~r~la~qi~~rv~~~~~~~~g 359 (908)
..+..++.+++ -.+++||.|+||++.+..+.-..+..+..+.. +..+.+.+.-. .++++.. +....
T Consensus 29 ~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~----~c~~i~~--~~HPD 102 (365)
T PRK07471 29 AALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHP----VARRIAA--GAHGG 102 (365)
T ss_pred HHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCCh----HHHHHHc--cCCCC
Confidence 34455556654 58999999999998766554433222111111 11111112211 2233321 11111
Q ss_pred CEEeEEeeccccC-CCCCcEEEEchHHHHHHHhcCCCCCcceEEEEechhccchhhHHHHHHHHHHCccCCCCcEEEecc
Q 002552 360 ETVGYQIRLESKR-SAQTRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILMSA 438 (908)
Q Consensus 360 ~~vg~~~~~~~~~-~~~~~Iiv~T~g~Ll~~l~~~~~l~~~~~iIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiIlmSA 438 (908)
..+ ..-..+.+. .....|.|-..-.+.+.+...+......+|||||+|. ++..-...++|.+....+...+|++|.
T Consensus 103 l~~-i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~--m~~~aanaLLK~LEepp~~~~~IL~t~ 179 (365)
T PRK07471 103 LLT-LERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADE--MNANAANALLKVLEEPPARSLFLLVSH 179 (365)
T ss_pred eEE-EecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHh--cCHHHHHHHHHHHhcCCCCeEEEEEEC
Confidence 110 000001110 0123455544444555555555667889999999995 456666677777765444555666554
Q ss_pred cC
Q 002552 439 TI 440 (908)
Q Consensus 439 T~ 440 (908)
..
T Consensus 180 ~~ 181 (365)
T PRK07471 180 AP 181 (365)
T ss_pred Cc
Confidence 43
No 241
>PRK05642 DNA replication initiation factor; Validated
Probab=95.77 E-value=0.024 Score=59.64 Aligned_cols=16 Identities=19% Similarity=0.532 Sum_probs=14.1
Q ss_pred CeEEEEecCCCCccch
Q 002552 298 QVLVVSGETGCGKTTQ 313 (908)
Q Consensus 298 ~~vii~a~TGSGKTt~ 313 (908)
..++++|++|+|||..
T Consensus 46 ~~l~l~G~~G~GKTHL 61 (234)
T PRK05642 46 SLIYLWGKDGVGRSHL 61 (234)
T ss_pred CeEEEECCCCCCHHHH
Confidence 5789999999999964
No 242
>PRK09183 transposase/IS protein; Provisional
Probab=95.73 E-value=0.12 Score=55.24 Aligned_cols=114 Identities=13% Similarity=0.230 Sum_probs=61.0
Q ss_pred HHhCCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCCEEeEEeeccccCC
Q 002552 294 VAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLGETVGYQIRLESKRS 373 (908)
Q Consensus 294 i~~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~~~~~~~g~~vg~~~~~~~~~~ 373 (908)
+..+.++++.||+|+|||+.+..+..... . . +..++++ +...+..++.... ..
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~a~-~--~--G~~v~~~-~~~~l~~~l~~a~----~~----------------- 151 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYEAV-R--A--GIKVRFT-TAADLLLQLSTAQ----RQ----------------- 151 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHHHH-H--c--CCeEEEE-eHHHHHHHHHHHH----HC-----------------
Confidence 56788999999999999976665543322 1 1 2355554 3334433332110 00
Q ss_pred CCCcEEEEchHHHHHHHhcCCCCCcceEEEEechhccchhhH---HHHHHHHHHCccCCCCcEEEecccCChHHHHhhhC
Q 002552 374 AQTRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNED---FLLIILRDLLPRRPDLRLILMSATINADLFSKYFG 450 (908)
Q Consensus 374 ~~~~Iiv~T~g~Ll~~l~~~~~l~~~~~iIiDEaHeR~~~~d---~ll~~lk~~~~~~~~~qiIlmSAT~~~~~~~~~f~ 450 (908)
+ +.+..+.. .+...+++||||++....+.+ .+..++...... +-++++.-.+.+.+.+.|+
T Consensus 152 -~------~~~~~~~~-----~~~~~dlLiiDdlg~~~~~~~~~~~lf~li~~r~~~----~s~iiTsn~~~~~w~~~~~ 215 (259)
T PRK09183 152 -G------RYKTTLQR-----GVMAPRLLIIDEIGYLPFSQEEANLFFQVIAKRYEK----GSMILTSNLPFGQWDQTFA 215 (259)
T ss_pred -C------cHHHHHHH-----HhcCCCEEEEcccccCCCChHHHHHHHHHHHHHHhc----CcEEEecCCCHHHHHHHhc
Confidence 0 11122211 124568999999994333322 344444332222 2356666677777777773
No 243
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.72 E-value=0.026 Score=64.62 Aligned_cols=42 Identities=21% Similarity=0.383 Sum_probs=26.8
Q ss_pred CCCCcceEEEEechhccchhhHHHHHHHHHHCccCCCCcEEEeccc
Q 002552 394 PDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILMSAT 439 (908)
Q Consensus 394 ~~l~~~~~iIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiIlmSAT 439 (908)
+.-..+.++||||||. +..+....+++.+.. |...++++-||
T Consensus 117 p~~g~~KV~IIDEah~--Ls~~A~NALLKtLEE--Pp~~viFILaT 158 (484)
T PRK14956 117 PMGGKYKVYIIDEVHM--LTDQSFNALLKTLEE--PPAHIVFILAT 158 (484)
T ss_pred hhcCCCEEEEEechhh--cCHHHHHHHHHHhhc--CCCceEEEeec
Confidence 3345789999999994 556666777777744 33344444344
No 244
>PTZ00146 fibrillarin; Provisional
Probab=95.71 E-value=0.016 Score=61.94 Aligned_cols=14 Identities=21% Similarity=0.159 Sum_probs=8.1
Q ss_pred EEEEecCCCCccch
Q 002552 300 LVVSGETGCGKTTQ 313 (908)
Q Consensus 300 vii~a~TGSGKTt~ 313 (908)
.|+-.-.|+|=+++
T Consensus 135 ~VLDLGaG~G~~t~ 148 (293)
T PTZ00146 135 KVLYLGAASGTTVS 148 (293)
T ss_pred EEEEeCCcCCHHHH
Confidence 45556666665653
No 245
>PRK08727 hypothetical protein; Validated
Probab=95.70 E-value=0.026 Score=59.34 Aligned_cols=18 Identities=39% Similarity=0.462 Sum_probs=14.8
Q ss_pred CeEEEEecCCCCccchHH
Q 002552 298 QVLVVSGETGCGKTTQLP 315 (908)
Q Consensus 298 ~~vii~a~TGSGKTt~~~ 315 (908)
+.+++.|++|+|||..+-
T Consensus 42 ~~l~l~G~~G~GKThL~~ 59 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLAL 59 (233)
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 569999999999995443
No 246
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=95.70 E-value=0.038 Score=65.80 Aligned_cols=50 Identities=16% Similarity=0.346 Sum_probs=33.1
Q ss_pred HHHHHhcCCCCCcceEEEEechhccchhhHHHHHHHHHHCccCCCCcEEEec
Q 002552 386 LLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILMS 437 (908)
Q Consensus 386 Ll~~l~~~~~l~~~~~iIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiIlmS 437 (908)
++..+...+....+++|||||+|. +...-.-.++|.+....+...+|+.+
T Consensus 120 Iie~~~~~P~~a~~KVvIIDEad~--Ls~~a~naLLKtLEePp~~~~fIl~t 169 (598)
T PRK09111 120 IIESVRYRPVSARYKVYIIDEVHM--LSTAAFNALLKTLEEPPPHVKFIFAT 169 (598)
T ss_pred HHHHHHhchhcCCcEEEEEEChHh--CCHHHHHHHHHHHHhCCCCeEEEEEe
Confidence 445555566778899999999995 33444556666655555566666654
No 247
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.69 E-value=0.055 Score=64.13 Aligned_cols=49 Identities=18% Similarity=0.167 Sum_probs=31.8
Q ss_pred HHHHhcCCCCCcceEEEEechhccchhhHHHHHHHHHHCccCCCCcEEEec
Q 002552 387 LRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILMS 437 (908)
Q Consensus 387 l~~l~~~~~l~~~~~iIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiIlmS 437 (908)
.+.+...+...++.++||||||. +..+-.-.++|.+....+...+|+.+
T Consensus 107 ~~~~~~~P~~~~~KVvIIDEah~--Lt~~A~NALLK~LEEpp~~~~fIL~t 155 (584)
T PRK14952 107 RDRAFYAPAQSRYRIFIVDEAHM--VTTAGFNALLKIVEEPPEHLIFIFAT 155 (584)
T ss_pred HHHHHhhhhcCCceEEEEECCCc--CCHHHHHHHHHHHhcCCCCeEEEEEe
Confidence 34444445668899999999994 44555666677666544455555544
No 248
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=95.69 E-value=0.019 Score=57.58 Aligned_cols=117 Identities=15% Similarity=0.289 Sum_probs=53.9
Q ss_pred HHhCCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCCEEeEEeeccccCC
Q 002552 294 VAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLGETVGYQIRLESKRS 373 (908)
Q Consensus 294 i~~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~~~~~~~g~~vg~~~~~~~~~~ 373 (908)
+.+++++++.|++|+|||..+...+.+. ... +..++++ +...|...+. .... .
T Consensus 44 ~~~~~~l~l~G~~G~GKThLa~ai~~~~-~~~----g~~v~f~-~~~~L~~~l~----~~~~-------------~---- 96 (178)
T PF01695_consen 44 IENGENLILYGPPGTGKTHLAVAIANEA-IRK----GYSVLFI-TASDLLDELK----QSRS-------------D---- 96 (178)
T ss_dssp -SC--EEEEEESTTSSHHHHHHHHHHHH-HHT----T--EEEE-EHHHHHHHHH----CCHC-------------C----
T ss_pred cccCeEEEEEhhHhHHHHHHHHHHHHHh-ccC----CcceeEe-ecCceecccc----cccc-------------c----
Confidence 4468899999999999997655544433 322 2344543 4444444332 1100 0
Q ss_pred CCCcEEEEchHHHHHHHhcCCCCCcceEEEEechhccchhhHHHHHHHHHHCc-cCCCCcEEEecccCChHHHHhhhCCC
Q 002552 374 AQTRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLP-RRPDLRLILMSATINADLFSKYFGNA 452 (908)
Q Consensus 374 ~~~~Iiv~T~g~Ll~~l~~~~~l~~~~~iIiDEaHeR~~~~d~ll~~lk~~~~-~~~~~qiIlmSAT~~~~~~~~~f~~~ 452 (908)
+ +.+.+++.+ .++++|||||+---.. ++.....+-.++. +... +-++++.-++.+.+.+.|++.
T Consensus 97 -~------~~~~~~~~l------~~~dlLilDDlG~~~~-~~~~~~~l~~ii~~R~~~-~~tIiTSN~~~~~l~~~~~d~ 161 (178)
T PF01695_consen 97 -G------SYEELLKRL------KRVDLLILDDLGYEPL-SEWEAELLFEIIDERYER-KPTIITSNLSPSELEEVLGDR 161 (178)
T ss_dssp -T------THCHHHHHH------HTSSCEEEETCTSS----HHHHHCTHHHHHHHHHT--EEEEEESS-HHHHHT-----
T ss_pred -c------chhhhcCcc------ccccEecccccceeee-cccccccchhhhhHhhcc-cCeEeeCCCchhhHhhccccc
Confidence 0 122344444 5789999999873212 2222222212221 2122 234456667888888888753
No 249
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=95.68 E-value=0.046 Score=59.13 Aligned_cols=58 Identities=24% Similarity=0.271 Sum_probs=45.0
Q ss_pred CCchHHHHHHHHHHHhCC--eEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccH
Q 002552 281 LPAFKMKAEFLKAVAENQ--VLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRR 340 (908)
Q Consensus 281 lpi~~~Q~~~i~~i~~~~--~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r 340 (908)
.|....|.-++.+++... -|.+.|+.|||||..++-.-++..+.. +...+|||+-|+.
T Consensus 227 ~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~--~~y~KiiVtRp~v 286 (436)
T COG1875 227 RPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLER--KRYRKIIVTRPTV 286 (436)
T ss_pred CcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHH--hhhceEEEecCCc
Confidence 466678999999998764 677899999999987777777776653 2355899988863
No 250
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.67 E-value=0.038 Score=63.92 Aligned_cols=50 Identities=22% Similarity=0.353 Sum_probs=31.8
Q ss_pred HHHHHhcCCCCCcceEEEEechhccchhhHHHHHHHHHHCccCCCCcEEEec
Q 002552 386 LLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILMS 437 (908)
Q Consensus 386 Ll~~l~~~~~l~~~~~iIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiIlmS 437 (908)
++......|...++.++||||+|. +..+-...++|.+....+...+|+.+
T Consensus 104 Iie~~~~~P~~~~~KVvIIDEah~--Ls~~A~NaLLK~LEePp~~v~fIlat 153 (491)
T PRK14964 104 ILENSCYLPISSKFKVYIIDEVHM--LSNSAFNALLKTLEEPAPHVKFILAT 153 (491)
T ss_pred HHHHHHhccccCCceEEEEeChHh--CCHHHHHHHHHHHhCCCCCeEEEEEe
Confidence 344444456678999999999994 34444556666665555555555543
No 251
>PRK08116 hypothetical protein; Validated
Probab=95.64 E-value=0.38 Score=51.64 Aligned_cols=25 Identities=32% Similarity=0.337 Sum_probs=17.7
Q ss_pred CeEEEEecCCCCccchHHHHHHHHHH
Q 002552 298 QVLVVSGETGCGKTTQLPQFILEEEL 323 (908)
Q Consensus 298 ~~vii~a~TGSGKTt~~~~~il~~~~ 323 (908)
.-+++.|++|+|||..+-. |...+.
T Consensus 115 ~gl~l~G~~GtGKThLa~a-ia~~l~ 139 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAAC-IANELI 139 (268)
T ss_pred ceEEEECCCCCCHHHHHHH-HHHHHH
Confidence 4599999999999965443 444443
No 252
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.61 E-value=0.068 Score=63.10 Aligned_cols=51 Identities=22% Similarity=0.373 Sum_probs=32.5
Q ss_pred HHHHHhcCCCCCcceEEEEechhccchhhHHHHHHHHHHCccCCCCcEEEecc
Q 002552 386 LLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILMSA 438 (908)
Q Consensus 386 Ll~~l~~~~~l~~~~~iIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiIlmSA 438 (908)
+++.+...+...+++++||||+|. +...-...+||.+..-.++.++|+.|-
T Consensus 112 Lie~~~~~P~~gr~KViIIDEah~--Ls~~AaNALLKTLEEPP~~v~FILaTt 162 (700)
T PRK12323 112 LLDKAVYAPTAGRFKVYMIDEVHM--LTNHAFNAMLKTLEEPPEHVKFILATT 162 (700)
T ss_pred HHHHHHhchhcCCceEEEEEChHh--cCHHHHHHHHHhhccCCCCceEEEEeC
Confidence 333333334556899999999994 445556677777655445566666543
No 253
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.60 E-value=0.059 Score=60.74 Aligned_cols=50 Identities=22% Similarity=0.389 Sum_probs=29.8
Q ss_pred HHHHHhcCCCCCcceEEEEechhccchhhHHHHHHHHHHCccCCCCcEEEec
Q 002552 386 LLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILMS 437 (908)
Q Consensus 386 Ll~~l~~~~~l~~~~~iIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiIlmS 437 (908)
+++.+...+...+..++||||+|. +..+-...+++.+....+..++|+.+
T Consensus 107 i~~~~~~~p~~~~~kviIIDEa~~--l~~~a~naLLk~lEe~~~~~~fIl~t 156 (363)
T PRK14961 107 ILDNIYYSPSKSRFKVYLIDEVHM--LSRHSFNALLKTLEEPPQHIKFILAT 156 (363)
T ss_pred HHHHHhcCcccCCceEEEEEChhh--cCHHHHHHHHHHHhcCCCCeEEEEEc
Confidence 344444445567789999999994 33333445566655544455555543
No 254
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=95.60 E-value=0.15 Score=54.70 Aligned_cols=32 Identities=22% Similarity=0.304 Sum_probs=26.4
Q ss_pred HHHHHHHHHHhCCeEEEEecCCCCccchHHHH
Q 002552 286 MKAEFLKAVAENQVLVVSGETGCGKTTQLPQF 317 (908)
Q Consensus 286 ~Q~~~i~~i~~~~~vii~a~TGSGKTt~~~~~ 317 (908)
..+.++..+..++.+++.||+|+|||+.+-.+
T Consensus 10 l~~~~l~~l~~g~~vLL~G~~GtGKT~lA~~l 41 (262)
T TIGR02640 10 VTSRALRYLKSGYPVHLRGPAGTGKTTLAMHV 41 (262)
T ss_pred HHHHHHHHHhcCCeEEEEcCCCCCHHHHHHHH
Confidence 45667778888999999999999999766544
No 255
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=95.59 E-value=0.038 Score=67.34 Aligned_cols=108 Identities=17% Similarity=0.108 Sum_probs=70.7
Q ss_pred chHHHHHHHHHHHhCCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCCEE
Q 002552 283 AFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLGETV 362 (908)
Q Consensus 283 i~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~~~~~~~g~~v 362 (908)
+.+-|.+++... ...++|.|..|||||+.+..-+...+... .-...+||++..|+.+|.++.+|+.+.++..
T Consensus 3 Ln~~Q~~av~~~--~g~~lV~AgpGSGKT~vL~~Ria~Li~~~-~v~p~~IL~lTFT~kAA~em~~Rl~~~l~~~----- 74 (672)
T PRK10919 3 LNPGQQQAVEFV--TGPCLVLAGAGSGKTRVITNKIAHLIRGC-GYQARHIAAVTFTNKAAREMKERVAQTLGRK----- 74 (672)
T ss_pred CCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHHHHHHHHhc-CCCHHHeeeEechHHHHHHHHHHHHHHhCcc-----
Confidence 456788887653 45678899999999988777666554321 1234589999999999999999998766421
Q ss_pred eEEeeccccCCCCCcEEEEchHHHH-HHHhcCC-CCC-cceEEEEechhc
Q 002552 363 GYQIRLESKRSAQTRLLFCTTGVLL-RQLVEDP-DLS-CVSHLLVDEIHE 409 (908)
Q Consensus 363 g~~~~~~~~~~~~~~Iiv~T~g~Ll-~~l~~~~-~l~-~~~~iIiDEaHe 409 (908)
....+.|.|-..+. +.|.... .+. .-.+-|+|+.+.
T Consensus 75 -----------~~~~v~i~TfHS~~~~iLr~~~~~~g~~~~~~i~d~~~~ 113 (672)
T PRK10919 75 -----------EARGLMISTFHTLGLDIIKREYAALGMKSNFSLFDDTDQ 113 (672)
T ss_pred -----------cccCcEEEcHHHHHHHHHHHHHHHhCCCCCCeeCCHHHH
Confidence 01347788976544 3333211 111 123567888774
No 256
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=95.59 E-value=0.076 Score=63.35 Aligned_cols=44 Identities=18% Similarity=0.334 Sum_probs=29.1
Q ss_pred cCCCCCcceEEEEechhccchhhHHHHHHHHHHCccCCCCcEEEec
Q 002552 392 EDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILMS 437 (908)
Q Consensus 392 ~~~~l~~~~~iIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiIlmS 437 (908)
..+.+.++++|||||+|. +..+....++|.+....+...+|+.+
T Consensus 113 ~~P~~gk~KVIIIDEad~--Ls~~A~NALLKtLEEPp~~v~fILaT 156 (709)
T PRK08691 113 YAPTAGKYKVYIIDEVHM--LSKSAFNAMLKTLEEPPEHVKFILAT 156 (709)
T ss_pred hhhhhCCcEEEEEECccc--cCHHHHHHHHHHHHhCCCCcEEEEEe
Confidence 344567899999999994 44444556666665555556666654
No 257
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=95.58 E-value=0.053 Score=53.48 Aligned_cols=54 Identities=17% Similarity=0.251 Sum_probs=35.4
Q ss_pred HHHHHHhcCCCCCcceEEEEechhccchhhHHHHHHHHHHCccCCCCcEEEecccC
Q 002552 385 VLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILMSATI 440 (908)
Q Consensus 385 ~Ll~~l~~~~~l~~~~~iIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiIlmSAT~ 440 (908)
.+...+...+.-..+.++||||||. +..+..-.++|.+..-..+..+|+++-..
T Consensus 89 ~i~~~~~~~~~~~~~KviiI~~ad~--l~~~a~NaLLK~LEepp~~~~fiL~t~~~ 142 (162)
T PF13177_consen 89 EIIEFLSLSPSEGKYKVIIIDEADK--LTEEAQNALLKTLEEPPENTYFILITNNP 142 (162)
T ss_dssp HHHHHCTSS-TTSSSEEEEEETGGG--S-HHHHHHHHHHHHSTTTTEEEEEEES-G
T ss_pred HHHHHHHHHHhcCCceEEEeehHhh--hhHHHHHHHHHHhcCCCCCEEEEEEECCh
Confidence 4444444455557899999999995 56666677777776655566677666553
No 258
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.58 E-value=0.051 Score=63.69 Aligned_cols=48 Identities=19% Similarity=0.321 Sum_probs=29.7
Q ss_pred HHHhcCCCCCcceEEEEechhccchhhHHHHHHHHHHCccCCCCcEEEec
Q 002552 388 RQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILMS 437 (908)
Q Consensus 388 ~~l~~~~~l~~~~~iIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiIlmS 437 (908)
..+...+.-.+++++||||||. +..+..-.++|.+....+...+|+.+
T Consensus 109 ~~~~~~p~~~~~kV~iIDE~~~--ls~~a~naLLk~LEepp~~~~fIlat 156 (509)
T PRK14958 109 DNIPYAPTKGRFKVYLIDEVHM--LSGHSFNALLKTLEEPPSHVKFILAT 156 (509)
T ss_pred HHHhhccccCCcEEEEEEChHh--cCHHHHHHHHHHHhccCCCeEEEEEE
Confidence 3333344456899999999994 44455566677665544455555543
No 259
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.57 E-value=0.034 Score=66.13 Aligned_cols=50 Identities=24% Similarity=0.371 Sum_probs=30.5
Q ss_pred HHHHHhcCCCCCcceEEEEechhccchhhHHHHHHHHHHCccCCCCcEEEec
Q 002552 386 LLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILMS 437 (908)
Q Consensus 386 Ll~~l~~~~~l~~~~~iIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiIlmS 437 (908)
++..+...+...+++++||||||. +..+-.-.++|.+....+...+|+.+
T Consensus 112 li~~~~~~p~~g~~KV~IIDEvh~--Ls~~a~NaLLKtLEEPP~~~~fIL~T 161 (618)
T PRK14951 112 LLEQAVYKPVQGRFKVFMIDEVHM--LTNTAFNAMLKTLEEPPEYLKFVLAT 161 (618)
T ss_pred HHHHHHhCcccCCceEEEEEChhh--CCHHHHHHHHHhcccCCCCeEEEEEE
Confidence 444444455667899999999994 44444555666654433444555543
No 260
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=95.54 E-value=0.042 Score=64.31 Aligned_cols=148 Identities=19% Similarity=0.182 Sum_probs=84.9
Q ss_pred HHHHHHHHHHh---------CCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCC
Q 002552 286 MKAEFLKAVAE---------NQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGE 356 (908)
Q Consensus 286 ~Q~~~i~~i~~---------~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~~~~~ 356 (908)
.|+-++..+.. -+.+++.-+=+.|||+.+....+..++.. ...+..|+++++++.-|..++..+......
T Consensus 2 wQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~-g~~~~~i~~~A~~~~QA~~~f~~~~~~i~~ 80 (477)
T PF03354_consen 2 WQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLD-GEPGAEIYCAANTRDQAKIVFDEAKKMIEA 80 (477)
T ss_pred cHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcC-CccCceEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 56666666652 24577788999999977766555544432 223568999999999999999888776543
Q ss_pred CCCCE--EeEEeeccccCCCCCcEEEEchHHHHHHHhcCC-C--CCcceEEEEechhccchhhHHHHHHHHHHCccCCCC
Q 002552 357 NLGET--VGYQIRLESKRSAQTRLLFCTTGVLLRQLVEDP-D--LSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDL 431 (908)
Q Consensus 357 ~~g~~--vg~~~~~~~~~~~~~~Iiv~T~g~Ll~~l~~~~-~--l~~~~~iIiDEaHeR~~~~d~ll~~lk~~~~~~~~~ 431 (908)
..... ....+ .......|.+-..+-+++.+.+++ . =.+.+++|+||+|+. .+.+ +...++.-...+++.
T Consensus 81 ~~~l~~~~~~~~----~~~~~~~i~~~~~~s~~~~~s~~~~~~dG~~~~~~i~DE~h~~-~~~~-~~~~l~~g~~~r~~p 154 (477)
T PF03354_consen 81 SPELRKRKKPKI----IKSNKKEIEFPKTGSFFKALSSDADSLDGLNPSLAIFDELHAH-KDDE-LYDALESGMGARPNP 154 (477)
T ss_pred Chhhccchhhhh----hhhhceEEEEcCCCcEEEEEecCCCCccCCCCceEEEeCCCCC-CCHH-HHHHHHhhhccCCCc
Confidence 21111 11111 000112333333333333333333 1 125789999999963 2223 444455555556776
Q ss_pred cEEEec-ccC
Q 002552 432 RLILMS-ATI 440 (908)
Q Consensus 432 qiIlmS-AT~ 440 (908)
+++..| |..
T Consensus 155 l~~~ISTag~ 164 (477)
T PF03354_consen 155 LIIIISTAGD 164 (477)
T ss_pred eEEEEeCCCC
Confidence 666654 443
No 261
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=95.49 E-value=0.082 Score=68.71 Aligned_cols=124 Identities=15% Similarity=0.115 Sum_probs=74.8
Q ss_pred CchHHHHHHHHHHHhC--CeEEEEecCCCCccchHHHHH--HHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCC
Q 002552 282 PAFKMKAEFLKAVAEN--QVLVVSGETGCGKTTQLPQFI--LEEELSSLRGADCNIICTQPRRISAISVAARVSSERGEN 357 (908)
Q Consensus 282 pi~~~Q~~~i~~i~~~--~~vii~a~TGSGKTt~~~~~i--l~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~~~~~~ 357 (908)
.+++-|.+++..++.+ +.++|+|..|+||||.+-..+ +..+. ...+..|+.+.||--+|..+.+ .+..
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~---e~~g~~V~glAPTgkAa~~L~e-----~Gi~ 906 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLP---ESERPRVVGLGPTHRAVGEMRS-----AGVD 906 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHHHHHHHHHHHh---hccCceEEEEechHHHHHHHHH-----hCch
Confidence 5788999999999854 899999999999998753322 22211 1224578888999888766531 1211
Q ss_pred CCCEEeEEeeccccCCCCCcEEEEchHHHHHHH-----hcCCCCCcceEEEEechhccchhhHHHHHHHHHHCccCCCCc
Q 002552 358 LGETVGYQIRLESKRSAQTRLLFCTTGVLLRQL-----VEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLR 432 (908)
Q Consensus 358 ~g~~vg~~~~~~~~~~~~~~Iiv~T~g~Ll~~l-----~~~~~l~~~~~iIiDEaHeR~~~~d~ll~~lk~~~~~~~~~q 432 (908)
-.|-..||... ..+......++|||||+= |++...+..+++.+.. ...|
T Consensus 907 ----------------------A~TIasfL~~~~~~~~~~~~~~~~~~llIVDEAS--MV~~~~m~~ll~~~~~--~gar 960 (1623)
T PRK14712 907 ----------------------AQTLASFLHDTQLQQRSGETPDFSNTLFLLDESS--MVGNTDMARAYALIAA--GGGR 960 (1623)
T ss_pred ----------------------HhhHHHHhccccchhhcccCCCCCCcEEEEEccc--cccHHHHHHHHHhhhh--CCCE
Confidence 01222222210 111123456899999997 3665555555554422 3468
Q ss_pred EEEeccc
Q 002552 433 LILMSAT 439 (908)
Q Consensus 433 iIlmSAT 439 (908)
+|++-=+
T Consensus 961 vVLVGD~ 967 (1623)
T PRK14712 961 AVASGDT 967 (1623)
T ss_pred EEEEcch
Confidence 8887644
No 262
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.49 E-value=0.067 Score=62.84 Aligned_cols=50 Identities=20% Similarity=0.325 Sum_probs=31.6
Q ss_pred HHHHHhcCCCCCcceEEEEechhccchhhHHHHHHHHHHCccCCCCcEEEec
Q 002552 386 LLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILMS 437 (908)
Q Consensus 386 Ll~~l~~~~~l~~~~~iIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiIlmS 437 (908)
++..+...+...++.++||||||. +..+....++|.+....+...+|+.+
T Consensus 107 ii~~~~~~p~~g~~kViIIDEa~~--ls~~a~naLLK~LEepp~~v~fIL~T 156 (546)
T PRK14957 107 ILDNIQYMPSQGRYKVYLIDEVHM--LSKQSFNALLKTLEEPPEYVKFILAT 156 (546)
T ss_pred HHHHHHhhhhcCCcEEEEEechhh--ccHHHHHHHHHHHhcCCCCceEEEEE
Confidence 445555555667899999999994 44445556666665444455555544
No 263
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.47 E-value=0.079 Score=56.94 Aligned_cols=124 Identities=19% Similarity=0.289 Sum_probs=65.4
Q ss_pred CCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEE--cccHHHHHHHHHHHHHHhCCCCCCEEeEEeeccccCCC
Q 002552 297 NQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICT--QPRRISAISVAARVSSERGENLGETVGYQIRLESKRSA 374 (908)
Q Consensus 297 ~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~--~P~r~la~qi~~rv~~~~~~~~g~~vg~~~~~~~~~~~ 374 (908)
.+.++++|++|+||||.+........ . .+ .+|+++ =+.|..+.+..+..+..++.. + +....
T Consensus 72 ~~vi~l~G~~G~GKTTt~akLA~~l~-~--~g--~~V~li~~D~~r~~a~~ql~~~~~~~~i~----~-~~~~~------ 135 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTIAKLANKLK-K--QG--KSVLLAAGDTFRAAAIEQLEEWAKRLGVD----V-IKQKE------ 135 (272)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHH-h--cC--CEEEEEeCCCCCHHHHHHHHHHHHhCCeE----E-EeCCC------
Confidence 46888999999999987776654332 1 22 234332 356666655444454544311 1 00000
Q ss_pred CCcEEEEch-HHHHHHHhcCCCCCcceEEEEechhccch-hhHHHHHHHHHHC-------ccCCCCcEEEecccCChHH
Q 002552 375 QTRLLFCTT-GVLLRQLVEDPDLSCVSHLLVDEIHERGM-NEDFLLIILRDLL-------PRRPDLRLILMSATINADL 444 (908)
Q Consensus 375 ~~~Iiv~T~-g~Ll~~l~~~~~l~~~~~iIiDEaHeR~~-~~d~ll~~lk~~~-------~~~~~~qiIlmSAT~~~~~ 444 (908)
.. -| ....+.+.. ....++++||||=+- |.. +...+.. ++.+. ...++-.++.++||...+.
T Consensus 136 ~~-----dp~~~~~~~l~~-~~~~~~D~ViIDT~G-~~~~d~~~~~e-l~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~ 206 (272)
T TIGR00064 136 GA-----DPAAVAFDAIQK-AKARNIDVVLIDTAG-RLQNKVNLMDE-LKKIKRVIKKVDKDAPDEVLLVLDATTGQNA 206 (272)
T ss_pred CC-----CHHHHHHHHHHH-HHHCCCCEEEEeCCC-CCcchHHHHHH-HHHHHHHHhcccCCCCceEEEEEECCCCHHH
Confidence 00 11 112222211 013578999999998 443 3333222 22222 2336778999999986554
No 264
>cd02646 R3H_G-patch R3H domain of a group of fungal and plant proteins with unknown function, who also contain a G-patch domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the R3H domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=95.46 E-value=0.033 Score=44.40 Aligned_cols=49 Identities=14% Similarity=0.245 Sum_probs=43.4
Q ss_pred HHhHHHHHhhccccceeeccccCCchhHHHHHHHHHhcCcceeeecCCce
Q 002552 120 EWWGKLEQMKRGEEQEMIIKRKFSRADQQTLADMAHQLGLHFHAYNKGKA 169 (908)
Q Consensus 120 ~~r~~~~~~~~~~~~e~~~~~~~s~~e~~~i~~~a~~~gl~~~~~~~g~~ 169 (908)
+.++.++.|..+....+.+++ ++..++..+|++|...|+++.+.|+|..
T Consensus 3 ~i~~~i~~F~~~~~~~~~fpp-m~~~~R~~vH~lA~~~~L~S~S~G~g~~ 51 (58)
T cd02646 3 DIKDEIEAFLLDSRDSLSFPP-MDKHGRKTIHKLANCYNLKSKSRGKGKK 51 (58)
T ss_pred HHHHHHHHHHhCCCceEecCC-CCHHHHHHHHHHHHHcCCcccccccCCc
Confidence 346778889988888898886 9999999999999999999999987766
No 265
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=95.39 E-value=0.076 Score=55.43 Aligned_cols=25 Identities=28% Similarity=0.417 Sum_probs=19.5
Q ss_pred hCCeEEEEecCCCCccchHHHHHHH
Q 002552 296 ENQVLVVSGETGCGKTTQLPQFILE 320 (908)
Q Consensus 296 ~~~~vii~a~TGSGKTt~~~~~il~ 320 (908)
.+..+++.||+|+|||+.+-.+..+
T Consensus 37 ~~~~lll~G~~G~GKT~la~~~~~~ 61 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQAACAA 61 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999766554433
No 266
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.36 E-value=0.067 Score=63.25 Aligned_cols=43 Identities=16% Similarity=0.346 Sum_probs=27.0
Q ss_pred CCCCCcceEEEEechhccchhhHHHHHHHHHHCccCCCCcEEEec
Q 002552 393 DPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILMS 437 (908)
Q Consensus 393 ~~~l~~~~~iIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiIlmS 437 (908)
.+...+++++||||||. +..+....++|.+....+...+|+.+
T Consensus 113 ~P~~gk~KV~IIDEVh~--LS~~A~NALLKtLEEPP~~v~FILaT 155 (702)
T PRK14960 113 APTQGRFKVYLIDEVHM--LSTHSFNALLKTLEEPPEHVKFLFAT 155 (702)
T ss_pred hhhcCCcEEEEEechHh--cCHHHHHHHHHHHhcCCCCcEEEEEE
Confidence 34456789999999994 44445556666655444445555543
No 267
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=95.35 E-value=0.1 Score=70.47 Aligned_cols=138 Identities=14% Similarity=0.141 Sum_probs=83.2
Q ss_pred CCCchHHHHHHHHHHHhC--CeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCC
Q 002552 280 KLPAFKMKAEFLKAVAEN--QVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGEN 357 (908)
Q Consensus 280 ~lpi~~~Q~~~i~~i~~~--~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~~~~~~ 357 (908)
.+++.+-|.+++..++.+ ++.+|+|+.|+||||.+-.. .+.+.. .+..|+++.||--+|..+.+.. +..
T Consensus 427 ~~~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~l~~l-~~~~~~----~G~~V~~lAPTgrAA~~L~e~~----g~~ 497 (1960)
T TIGR02760 427 EFALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEIAQLL-LHLASE----QGYEIQIITAGSLSAQELRQKI----PRL 497 (1960)
T ss_pred cCCCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHHHHHH-HHHHHh----cCCeEEEEeCCHHHHHHHHHHh----cch
Confidence 467888999999998875 79999999999999765433 232211 2457899999998886665432 211
Q ss_pred CCCEEeEEeeccccCCCCCcEEEEchHHHHHHHhcCCCCCcceEEEEechhccchhhHHHHHHHHHHCccCCCCcEEEec
Q 002552 358 LGETVGYQIRLESKRSAQTRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILMS 437 (908)
Q Consensus 358 ~g~~vg~~~~~~~~~~~~~~Iiv~T~g~Ll~~l~~~~~l~~~~~iIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiIlmS 437 (908)
... +. +....... .....|...++ ..+..+...++|||||+- |+++..+..+++.+.. .+.|+|++-
T Consensus 498 A~T-i~---~~l~~l~~--~~~~~tv~~fl---~~~~~l~~~~vlIVDEAs--Ml~~~~~~~Ll~~a~~--~garvVlvG 564 (1960)
T TIGR02760 498 AST-FI---TWVKNLFN--DDQDHTVQGLL---DKSSPFSNKDIFVVDEAN--KLSNNELLKLIDKAEQ--HNSKLILLN 564 (1960)
T ss_pred hhh-HH---HHHHhhcc--cccchhHHHhh---cccCCCCCCCEEEEECCC--CCCHHHHHHHHHHHhh--cCCEEEEEc
Confidence 000 00 00000000 01112222333 223356788999999998 3777777777765533 357888775
Q ss_pred cc
Q 002552 438 AT 439 (908)
Q Consensus 438 AT 439 (908)
=+
T Consensus 565 D~ 566 (1960)
T TIGR02760 565 DS 566 (1960)
T ss_pred Ch
Confidence 33
No 268
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=95.35 E-value=0.29 Score=55.65 Aligned_cols=32 Identities=22% Similarity=0.369 Sum_probs=26.5
Q ss_pred HHHHHHHHHHhCCeEEEEecCCCCccchHHHH
Q 002552 286 MKAEFLKAVAENQVLVVSGETGCGKTTQLPQF 317 (908)
Q Consensus 286 ~Q~~~i~~i~~~~~vii~a~TGSGKTt~~~~~ 317 (908)
..+.++..+..++++++.|++|+|||+.+-..
T Consensus 183 ~le~l~~~L~~~~~iil~GppGtGKT~lA~~l 214 (459)
T PRK11331 183 TIETILKRLTIKKNIILQGPPGVGKTFVARRL 214 (459)
T ss_pred HHHHHHHHHhcCCCEEEECCCCCCHHHHHHHH
Confidence 44667888888999999999999999877543
No 269
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=95.32 E-value=0.065 Score=59.20 Aligned_cols=136 Identities=17% Similarity=0.258 Sum_probs=68.9
Q ss_pred CchHHHHHHHHHHHhCC----eEEEEecCCCCccchHHHHHHHHHHhccC-CCCcEEEEEcccHHHHHHHHHHHHHHhCC
Q 002552 282 PAFKMKAEFLKAVAENQ----VLVVSGETGCGKTTQLPQFILEEELSSLR-GADCNIICTQPRRISAISVAARVSSERGE 356 (908)
Q Consensus 282 pi~~~Q~~~i~~i~~~~----~vii~a~TGSGKTt~~~~~il~~~~~~~~-~~~~~ilv~~P~r~la~qi~~rv~~~~~~ 356 (908)
++||.|...+..+.... -.+++||.|+|||+.+-.+.-.....+.. ...|- -| .. ++.+.. +.
T Consensus 3 ~~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg-~C-----~s----C~~~~~--g~ 70 (328)
T PRK05707 3 EIYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACG-SC-----KG----CQLLRA--GS 70 (328)
T ss_pred cCCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCC-CC-----HH----HHHHhc--CC
Confidence 45778888888876533 58899999999997665554332211111 00110 00 01 111111 11
Q ss_pred CCCCEEeEEeeccccCCCCCcEEEEchHHHHHHHhcCCCCCcceEEEEechhccchhhHHHHHHHHHHCccCCCCcEEEe
Q 002552 357 NLGETVGYQIRLESKRSAQTRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILM 436 (908)
Q Consensus 357 ~~g~~vg~~~~~~~~~~~~~~Iiv~T~g~Ll~~l~~~~~l~~~~~iIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiIlm 436 (908)
.. . +- .+..+. .+..|-|-.--.+.+.+...+.....+++||||||. ++.+-.-.++|.+..-.++.-+|+.
T Consensus 71 HP-D-~~-~i~~~~---~~~~i~id~iR~l~~~~~~~~~~~~~kv~iI~~a~~--m~~~aaNaLLK~LEEPp~~~~fiL~ 142 (328)
T PRK05707 71 HP-D-NF-VLEPEE---ADKTIKVDQVRELVSFVVQTAQLGGRKVVLIEPAEA--MNRNAANALLKSLEEPSGDTVLLLI 142 (328)
T ss_pred CC-C-EE-EEeccC---CCCCCCHHHHHHHHHHHhhccccCCCeEEEECChhh--CCHHHHHHHHHHHhCCCCCeEEEEE
Confidence 10 0 00 010000 011232222233455555556677899999999995 4556667777766554444444444
Q ss_pred c
Q 002552 437 S 437 (908)
Q Consensus 437 S 437 (908)
|
T Consensus 143 t 143 (328)
T PRK05707 143 S 143 (328)
T ss_pred E
Confidence 3
No 270
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=95.31 E-value=0.13 Score=67.95 Aligned_cols=127 Identities=15% Similarity=0.094 Sum_probs=77.2
Q ss_pred CCchHHHHHHHHHHHhC--CeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCC
Q 002552 281 LPAFKMKAEFLKAVAEN--QVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENL 358 (908)
Q Consensus 281 lpi~~~Q~~~i~~i~~~--~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~~~~~~~ 358 (908)
..+.+-|.+++..++.+ +.++|+|..|+||||.+-..+ +.+.......+..|+.++||--+|..+.+ .|..
T Consensus 966 ~~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l~~v~-~~~~~l~~~~~~~V~glAPTgrAAk~L~e-----~Gi~- 1038 (1747)
T PRK13709 966 EGLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQFRAVM-SAVNTLPESERPRVVGLGPTHRAVGEMRS-----AGVD- 1038 (1747)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHHHHH-HHHHHhhcccCceEEEECCcHHHHHHHHh-----cCcc-
Confidence 46789999999999874 799999999999998754332 22211111223568888999888765431 1211
Q ss_pred CCEEeEEeeccccCCCCCcEEEEchHHHHHHHh----c-CCCCCcceEEEEechhccchhhHHHHHHHHHHCccCCCCcE
Q 002552 359 GETVGYQIRLESKRSAQTRLLFCTTGVLLRQLV----E-DPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRL 433 (908)
Q Consensus 359 g~~vg~~~~~~~~~~~~~~Iiv~T~g~Ll~~l~----~-~~~l~~~~~iIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qi 433 (908)
-.|-..|+.... . +......++|||||+= |++...+..+++.+.. ...|+
T Consensus 1039 ---------------------A~TI~s~L~~~~~~~~~~~~~~~~~~llIVDEaS--Mv~~~~m~~Ll~~~~~--~garv 1093 (1747)
T PRK13709 1039 ---------------------AQTLASFLHDTQLQQRSGETPDFSNTLFLLDESS--MVGNTDMARAYALIAA--GGGRA 1093 (1747)
T ss_pred ---------------------hhhHHHHhcccccccccccCCCCCCcEEEEEccc--cccHHHHHHHHHhhhc--CCCEE
Confidence 123333332211 1 1122345899999996 3676666666665532 34678
Q ss_pred EEeccc
Q 002552 434 ILMSAT 439 (908)
Q Consensus 434 IlmSAT 439 (908)
|++-=+
T Consensus 1094 VLVGD~ 1099 (1747)
T PRK13709 1094 VSSGDT 1099 (1747)
T ss_pred EEecch
Confidence 877533
No 271
>PRK08084 DNA replication initiation factor; Provisional
Probab=95.30 E-value=0.039 Score=58.09 Aligned_cols=21 Identities=14% Similarity=0.257 Sum_probs=16.7
Q ss_pred CCeEEEEecCCCCccchHHHH
Q 002552 297 NQVLVVSGETGCGKTTQLPQF 317 (908)
Q Consensus 297 ~~~vii~a~TGSGKTt~~~~~ 317 (908)
...++++||+|||||+.+-.+
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~ 65 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAA 65 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHH
Confidence 468999999999999655433
No 272
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=95.29 E-value=0.068 Score=55.97 Aligned_cols=23 Identities=22% Similarity=0.556 Sum_probs=17.9
Q ss_pred hCCeEEEEecCCCCccchHHHHH
Q 002552 296 ENQVLVVSGETGCGKTTQLPQFI 318 (908)
Q Consensus 296 ~~~~vii~a~TGSGKTt~~~~~i 318 (908)
.++.++++|++|+|||+.+-.+.
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~ 63 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALV 63 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHH
Confidence 45689999999999997555443
No 273
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.28 E-value=0.08 Score=60.08 Aligned_cols=124 Identities=16% Similarity=0.221 Sum_probs=67.1
Q ss_pred CeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCCEEeEEeeccccCCCCCc
Q 002552 298 QVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLGETVGYQIRLESKRSAQTR 377 (908)
Q Consensus 298 ~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~~~~~~~g~~vg~~~~~~~~~~~~~~ 377 (908)
.+++++|++|+||||.+....... . ..+..+.++.+=|.|..|....+..++..+.+ + +..... .
T Consensus 101 ~vi~lvG~~GvGKTTtaaKLA~~l--~-~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp----~-~~~~~~------~- 165 (429)
T TIGR01425 101 NVIMFVGLQGSGKTTTCTKLAYYY--Q-RKGFKPCLVCADTFRAGAFDQLKQNATKARIP----F-YGSYTE------S- 165 (429)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH--H-HCCCCEEEEcCcccchhHHHHHHHHhhccCCe----E-EeecCC------C-
Confidence 578999999999998877665432 1 12333333444466777766555444433221 1 111000 0
Q ss_pred EEEEch-HHHHHHHhcCCCCCcceEEEEechhccchhhHHHHHHHHHHCccCCCCcEEEecccCC
Q 002552 378 LLFCTT-GVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILMSATIN 441 (908)
Q Consensus 378 Iiv~T~-g~Ll~~l~~~~~l~~~~~iIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiIlmSAT~~ 441 (908)
.| ....+.+..- .-..+++||||=+-....+.+.+..+.+......|+..+++++||..
T Consensus 166 ----dp~~i~~~~l~~~-~~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~G 225 (429)
T TIGR01425 166 ----DPVKIASEGVEKF-KKENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIG 225 (429)
T ss_pred ----CHHHHHHHHHHHH-HhCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccC
Confidence 11 1111112110 11468999999998322444444444444434567778899999974
No 274
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.26 E-value=0.053 Score=61.65 Aligned_cols=40 Identities=30% Similarity=0.361 Sum_probs=28.0
Q ss_pred CCchHHHHHHHHHHHhC--CeEEEEecCCCCccchHHHHHHH
Q 002552 281 LPAFKMKAEFLKAVAEN--QVLVVSGETGCGKTTQLPQFILE 320 (908)
Q Consensus 281 lpi~~~Q~~~i~~i~~~--~~vii~a~TGSGKTt~~~~~il~ 320 (908)
|..++.+.+.+..+.+. --++++|||||||||..-..+-+
T Consensus 240 Lg~~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTTLY~~L~~ 281 (500)
T COG2804 240 LGMSPFQLARLLRLLNRPQGLILVTGPTGSGKTTTLYAALSE 281 (500)
T ss_pred hCCCHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence 45566676666666543 47899999999999866554433
No 275
>PRK10867 signal recognition particle protein; Provisional
Probab=95.21 E-value=0.13 Score=58.76 Aligned_cols=127 Identities=17% Similarity=0.183 Sum_probs=68.2
Q ss_pred CeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCCEEeEEeeccccCCCCCc
Q 002552 298 QVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLGETVGYQIRLESKRSAQTR 377 (908)
Q Consensus 298 ~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~~~~~~~g~~vg~~~~~~~~~~~~~~ 377 (908)
.+++++|++||||||.+..+....... .+....++..=+.|..|....+..++..+.. + |....
T Consensus 101 ~vI~~vG~~GsGKTTtaakLA~~l~~~--~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~----v-~~~~~--------- 164 (433)
T PRK10867 101 TVIMMVGLQGAGKTTTAGKLAKYLKKK--KKKKVLLVAADVYRPAAIEQLKTLGEQIGVP----V-FPSGD--------- 164 (433)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHh--cCCcEEEEEccccchHHHHHHHHHHhhcCCe----E-EecCC---------
Confidence 578999999999998877766543211 1334445555678887765555555543322 1 10000
Q ss_pred EEEEchHHHHHHHhcCCCCCcceEEEEechhccc-hhhHHHHHHHHHHCccCCCCcEEEecccCChH
Q 002552 378 LLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERG-MNEDFLLIILRDLLPRRPDLRLILMSATINAD 443 (908)
Q Consensus 378 Iiv~T~g~Ll~~l~~~~~l~~~~~iIiDEaHeR~-~~~d~ll~~lk~~~~~~~~~qiIlmSAT~~~~ 443 (908)
-..|.-+............+++||||=+= |. .+.+....+.+......|+--++.++|+...+
T Consensus 165 --~~dp~~i~~~a~~~a~~~~~DvVIIDTaG-rl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq~ 228 (433)
T PRK10867 165 --GQDPVDIAKAALEEAKENGYDVVIVDTAG-RLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQD 228 (433)
T ss_pred --CCCHHHHHHHHHHHHHhcCCCEEEEeCCC-CcccCHHHHHHHHHHHHhhCCCeEEEEEecccHHH
Confidence 01233333211111123578999999987 43 33333333222222234555588888887433
No 276
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.17 E-value=0.084 Score=62.31 Aligned_cols=50 Identities=20% Similarity=0.337 Sum_probs=31.8
Q ss_pred HHHHHhcCCCCCcceEEEEechhccchhhHHHHHHHHHHCccCCCCcEEEec
Q 002552 386 LLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILMS 437 (908)
Q Consensus 386 Ll~~l~~~~~l~~~~~iIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiIlmS 437 (908)
++..+...|...++.++||||+|. +..+-.-.++|.+....+...+|+.+
T Consensus 107 l~~~~~~~p~~~~~kVvIIDEad~--ls~~a~naLLK~LEepp~~~~fIL~t 156 (527)
T PRK14969 107 LLDNAQYAPTRGRFKVYIIDEVHM--LSKSAFNAMLKTLEEPPEHVKFILAT 156 (527)
T ss_pred HHHHHhhCcccCCceEEEEcCccc--CCHHHHHHHHHHHhCCCCCEEEEEEe
Confidence 344444455667899999999995 33344456677766554556666654
No 277
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=95.11 E-value=0.29 Score=57.61 Aligned_cols=158 Identities=17% Similarity=0.188 Sum_probs=94.1
Q ss_pred HHHhhcCCCchHHHHHHHHHHHhCCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHH
Q 002552 274 MLSFREKLPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSE 353 (908)
Q Consensus 274 ~~~~r~~lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~~ 353 (908)
.++.--.+|.. -..++... +.+-.++..|==.|||..+. +++..+...- .+.+|++++|.+..+..+++++...
T Consensus 234 ~lk~~Fdi~~~--s~~~~~~f-kqk~tVflVPRR~GKTwivv-~iI~~ll~s~--~Gi~IgytAH~~~ts~~vF~eI~~~ 307 (738)
T PHA03368 234 FLRTVFNTPLF--SDAAVRHF-RQRATVFLVPRRHGKTWFLV-PLIALALATF--RGIKIGYTAHIRKATEPVFEEIGAR 307 (738)
T ss_pred HHHHHcCCccc--cHHHHHHh-hccceEEEecccCCchhhHH-HHHHHHHHhC--CCCEEEEEcCcHHHHHHHHHHHHHH
Confidence 33333444432 33444444 45668888999999997665 4443333221 2568999999999999999998775
Q ss_pred hCCCC-CCEE----eEEe--eccccCCCCCcEEEEchHHHHHHHhcCC--CCCcceEEEEechhccchhhHHHHHHHHHH
Q 002552 354 RGENL-GETV----GYQI--RLESKRSAQTRLLFCTTGVLLRQLVEDP--DLSCVSHLLVDEIHERGMNEDFLLIILRDL 424 (908)
Q Consensus 354 ~~~~~-g~~v----g~~~--~~~~~~~~~~~Iiv~T~g~Ll~~l~~~~--~l~~~~~iIiDEaHeR~~~~d~ll~~lk~~ 424 (908)
+.... +..+ |-.+ .+.+ .....|.|.+. .+.. .=.++++||||||+. +..+.+..++-.+
T Consensus 308 le~~f~~~~v~~vkGe~I~i~f~n--G~kstI~FaSa-------rntNsiRGqtfDLLIVDEAqF--Ik~~al~~ilp~l 376 (738)
T PHA03368 308 LRQWFGASRVDHVKGETISFSFPD--GSRSTIVFASS-------HNTNGIRGQDFNLLFVDEANF--IRPDAVQTIMGFL 376 (738)
T ss_pred HhhhcchhheeeecCcEEEEEecC--CCccEEEEEec-------cCCCCccCCcccEEEEechhh--CCHHHHHHHHHHH
Confidence 33111 1111 1011 1111 11135666632 1111 124799999999997 5566676766444
Q ss_pred CccCCCCcEEEecccCChHHHHhhhC
Q 002552 425 LPRRPDLRLILMSATINADLFSKYFG 450 (908)
Q Consensus 425 ~~~~~~~qiIlmSAT~~~~~~~~~f~ 450 (908)
... +.++|.+|.|-..+....|+.
T Consensus 377 ~~~--n~k~I~ISS~Ns~~~sTSFL~ 400 (738)
T PHA03368 377 NQT--NCKIIFVSSTNTGKASTSFLY 400 (738)
T ss_pred hcc--CccEEEEecCCCCccchHHHH
Confidence 443 789999999977665555553
No 278
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=95.10 E-value=0.15 Score=51.68 Aligned_cols=48 Identities=23% Similarity=0.342 Sum_probs=29.1
Q ss_pred HHHHhcCCCCCcceEEEEechhccchhhHHHHHHHHHHCccCCCCcEEEe
Q 002552 387 LRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILM 436 (908)
Q Consensus 387 l~~l~~~~~l~~~~~iIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiIlm 436 (908)
.+.+...+......+|||||+|. +..+....+++.+....++.-+|+.
T Consensus 85 ~~~~~~~~~~~~~kviiide~~~--l~~~~~~~Ll~~le~~~~~~~~il~ 132 (188)
T TIGR00678 85 VEFLSRTPQESGRRVVIIEDAER--MNEAAANALLKTLEEPPPNTLFILI 132 (188)
T ss_pred HHHHccCcccCCeEEEEEechhh--hCHHHHHHHHHHhcCCCCCeEEEEE
Confidence 55555566678899999999995 3334444555555443333344443
No 279
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=95.09 E-value=0.065 Score=66.14 Aligned_cols=106 Identities=19% Similarity=0.125 Sum_probs=70.1
Q ss_pred chHHHHHHHHHHHhCCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCCEE
Q 002552 283 AFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLGETV 362 (908)
Q Consensus 283 i~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~~~~~~~g~~v 362 (908)
+.+-|.+++.. ....++|.|..|||||+.+..-+...+.. ..-+..+||++..|+.+|.++.+|+.+..+..
T Consensus 5 Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~L~~Ria~Li~~-~~v~p~~IL~lTFTnkAA~em~~Rl~~~~~~~----- 76 (715)
T TIGR01075 5 LNDKQREAVAA--PPGNLLVLAGAGSGKTRVLTHRIAWLLSV-ENASPHSIMAVTFTNKAAAEMRHRIGALLGTS----- 76 (715)
T ss_pred cCHHHHHHHcC--CCCCEEEEecCCCCHHHHHHHHHHHHHHc-CCCCHHHeEeeeccHHHHHHHHHHHHHHhccc-----
Confidence 45678887765 34578999999999998877666554422 12234589999999999999999998865421
Q ss_pred eEEeeccccCCCCCcEEEEchHHHH-HHHhcCC---CCCcceEEEEechhc
Q 002552 363 GYQIRLESKRSAQTRLLFCTTGVLL-RQLVEDP---DLSCVSHLLVDEIHE 409 (908)
Q Consensus 363 g~~~~~~~~~~~~~~Iiv~T~g~Ll-~~l~~~~---~l~~~~~iIiDEaHe 409 (908)
...+.|+|-..+. +.|.... .+. -.+-|+|+.+.
T Consensus 77 ------------~~~~~i~TfHs~~~~iLr~~~~~~g~~-~~f~i~d~~d~ 114 (715)
T TIGR01075 77 ------------ARGMWIGTFHGLAHRLLRAHHLDAGLP-QDFQILDSDDQ 114 (715)
T ss_pred ------------ccCcEEEcHHHHHHHHHHHHHHHhCCC-CCCeecCHHHH
Confidence 1246788966443 3343221 111 13457888774
No 280
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=95.08 E-value=0.093 Score=58.46 Aligned_cols=31 Identities=29% Similarity=0.444 Sum_probs=22.2
Q ss_pred HHHHHHHhCC--eEEEEecCCCCccchHHHHHH
Q 002552 289 EFLKAVAENQ--VLVVSGETGCGKTTQLPQFIL 319 (908)
Q Consensus 289 ~~i~~i~~~~--~vii~a~TGSGKTt~~~~~il 319 (908)
.+...+..++ .+++.||+|+|||+.+-.+..
T Consensus 26 ~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~ 58 (337)
T PRK12402 26 RLSRAVDSPNLPHLLVQGPPGSGKTAAVRALAR 58 (337)
T ss_pred HHHHHHhCCCCceEEEECCCCCCHHHHHHHHHH
Confidence 3444445555 799999999999987665543
No 281
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=95.08 E-value=0.13 Score=69.64 Aligned_cols=122 Identities=15% Similarity=0.125 Sum_probs=76.9
Q ss_pred CCchHHHHHHHHHHHhC--CeEEEEecCCCCccchHH---HHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhC
Q 002552 281 LPAFKMKAEFLKAVAEN--QVLVVSGETGCGKTTQLP---QFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERG 355 (908)
Q Consensus 281 lpi~~~Q~~~i~~i~~~--~~vii~a~TGSGKTt~~~---~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~~~~ 355 (908)
..+++-|.+++..++.+ +.++|+|..|+||||.+- ..+.+.+ . ..+..|+.++||-.+|..+.+ .+
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~-~---~~g~~v~glApT~~Aa~~L~~-----~g 1088 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAF-E---SEQLQVIGLAPTHEAVGELKS-----AG 1088 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHH-H---hcCCeEEEEeChHHHHHHHHh-----cC
Confidence 46789999999998764 788999999999998773 2333332 2 124578889999888766631 12
Q ss_pred CCCCCEEeEEeeccccCCCCCcEEEEchHHHHHHH---hcCCCCCcceEEEEechhccchhhHHHHHHHHHHCccCCCCc
Q 002552 356 ENLGETVGYQIRLESKRSAQTRLLFCTTGVLLRQL---VEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLR 432 (908)
Q Consensus 356 ~~~g~~vg~~~~~~~~~~~~~~Iiv~T~g~Ll~~l---~~~~~l~~~~~iIiDEaHeR~~~~d~ll~~lk~~~~~~~~~q 432 (908)
.. -.|-..|+... ...+.+...++|||||+= |+++..+..+++.+.. +..|
T Consensus 1089 ~~----------------------a~Ti~s~l~~~~~~~~~~~~~~~~v~ivDEas--Mv~~~~~~~l~~~~~~--~~ak 1142 (1960)
T TIGR02760 1089 VQ----------------------AQTLDSFLTDISLYRNSGGDFRNTLFILDESS--MVSNFQLTHATELVQK--SGSR 1142 (1960)
T ss_pred Cc----------------------hHhHHHHhcCcccccccCCCCcccEEEEEccc--cccHHHHHHHHHhccC--CCCE
Confidence 11 01222222110 112235677899999996 3666666666655433 3467
Q ss_pred EEEec
Q 002552 433 LILMS 437 (908)
Q Consensus 433 iIlmS 437 (908)
+|++-
T Consensus 1143 ~vlvG 1147 (1960)
T TIGR02760 1143 AVSLG 1147 (1960)
T ss_pred EEEeC
Confidence 77764
No 282
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=95.02 E-value=0.11 Score=60.31 Aligned_cols=36 Identities=25% Similarity=0.350 Sum_probs=22.7
Q ss_pred CeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEE
Q 002552 298 QVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICT 336 (908)
Q Consensus 298 ~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~ 336 (908)
+.+++.||+|+|||+.+ +.+...+..+ .+..+++++
T Consensus 149 ~~l~l~G~~G~GKThL~-~ai~~~~~~~--~~~~~v~yi 184 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLL-HAIGNYILEK--NPNAKVVYV 184 (450)
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHHHHh--CCCCeEEEE
Confidence 46899999999999644 3344444332 224466665
No 283
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=95.02 E-value=0.079 Score=64.96 Aligned_cols=108 Identities=19% Similarity=0.114 Sum_probs=72.3
Q ss_pred hHHHHHHHHHHHhCCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCCEEe
Q 002552 284 FKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLGETVG 363 (908)
Q Consensus 284 ~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~~~~~~~g~~vg 363 (908)
.+-|.+++.. ....++|.|..|||||+.+..-+...+... .-...+|+++..|+.+|.++-+|+.+.++..
T Consensus 3 n~~Q~~av~~--~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~-~~~p~~IL~vTFt~~Aa~em~~Rl~~~l~~~------ 73 (664)
T TIGR01074 3 NPQQQEAVEY--VTGPCLVLAGAGSGKTRVITNKIAYLIQNC-GYKARNIAAVTFTNKAAREMKERVAKTLGKG------ 73 (664)
T ss_pred CHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhc-CCCHHHeEEEeccHHHHHHHHHHHHHHhCcc------
Confidence 4567777664 356789999999999988887776655321 1234589999999999999999998766421
Q ss_pred EEeeccccCCCCCcEEEEchHHHHHHHhcCC--CCC-cceEEEEechhcc
Q 002552 364 YQIRLESKRSAQTRLLFCTTGVLLRQLVEDP--DLS-CVSHLLVDEIHER 410 (908)
Q Consensus 364 ~~~~~~~~~~~~~~Iiv~T~g~Ll~~l~~~~--~l~-~~~~iIiDEaHeR 410 (908)
....+.|.|-..|...+.... .+. .-.+-|+|+.+.+
T Consensus 74 ----------~~~~v~v~TfHs~a~~il~~~~~~~g~~~~~~il~~~~~~ 113 (664)
T TIGR01074 74 ----------EARGLTISTFHTLGLDIIKREYNALGYKSNFSLFDETDQL 113 (664)
T ss_pred ----------ccCCeEEEeHHHHHHHHHHHHHHHhCCCCCCEEeCHHHHH
Confidence 124678889776654443221 000 1224578988743
No 284
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=95.00 E-value=0.11 Score=59.57 Aligned_cols=37 Identities=27% Similarity=0.407 Sum_probs=23.8
Q ss_pred CeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEc
Q 002552 298 QVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQ 337 (908)
Q Consensus 298 ~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~ 337 (908)
+.+++.|++|+|||..+ +.+...+... .....++++.
T Consensus 137 n~l~l~G~~G~GKThL~-~ai~~~l~~~--~~~~~v~yi~ 173 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLL-HAIGNEILEN--NPNAKVVYVS 173 (405)
T ss_pred CeEEEECCCCCcHHHHH-HHHHHHHHHh--CCCCcEEEEE
Confidence 46899999999999655 4455544432 2234666653
No 285
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.00 E-value=0.15 Score=59.13 Aligned_cols=28 Identities=29% Similarity=0.406 Sum_probs=20.0
Q ss_pred HHHhCC---eEEEEecCCCCccchHHHHHHH
Q 002552 293 AVAENQ---VLVVSGETGCGKTTQLPQFILE 320 (908)
Q Consensus 293 ~i~~~~---~vii~a~TGSGKTt~~~~~il~ 320 (908)
.+.+++ .+|++||+|+||||.+-.+.-.
T Consensus 29 ~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~ 59 (472)
T PRK14962 29 ALKKNSISHAYIFAGPRGTGKTTVARILAKS 59 (472)
T ss_pred HHHcCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 344444 3799999999999877665443
No 286
>PRK12377 putative replication protein; Provisional
Probab=94.98 E-value=0.22 Score=52.59 Aligned_cols=114 Identities=21% Similarity=0.296 Sum_probs=56.6
Q ss_pred CCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCCEEeEEeeccccCCCCC
Q 002552 297 NQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLGETVGYQIRLESKRSAQT 376 (908)
Q Consensus 297 ~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~~~~~~~g~~vg~~~~~~~~~~~~~ 376 (908)
...+++.|++|+|||..+.... ..+.. .+ ..++++ +..++...+.... .. . .
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa-~~l~~--~g--~~v~~i-~~~~l~~~l~~~~----~~--------------~---~- 152 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIG-NRLLA--KG--RSVIVV-TVPDVMSRLHESY----DN--------------G---Q- 152 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHH-HHHHH--cC--CCeEEE-EHHHHHHHHHHHH----hc--------------c---c-
Confidence 4689999999999996554433 33332 12 233332 3345554443221 10 0 0
Q ss_pred cEEEEchHHHHHHHhcCCCCCcceEEEEechhccchhhHHHHHHHHHHCc-cCCCCcEEEecccCChHHHHhhhC
Q 002552 377 RLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLP-RRPDLRLILMSATINADLFSKYFG 450 (908)
Q Consensus 377 ~Iiv~T~g~Ll~~l~~~~~l~~~~~iIiDEaHeR~~~~d~ll~~lk~~~~-~~~~~qiIlmSAT~~~~~~~~~f~ 450 (908)
+...+++. +.++++|||||++.- ..++.-..++-.++. +..+.+-++++.-++.+.+.+.++
T Consensus 153 -----~~~~~l~~------l~~~dLLiIDDlg~~-~~s~~~~~~l~~ii~~R~~~~~ptiitSNl~~~~l~~~~~ 215 (248)
T PRK12377 153 -----SGEKFLQE------LCKVDLLVLDEIGIQ-RETKNEQVVLNQIIDRRTASMRSVGMLTNLNHEAMSTLLG 215 (248)
T ss_pred -----hHHHHHHH------hcCCCEEEEcCCCCC-CCCHHHHHHHHHHHHHHHhcCCCEEEEcCCCHHHHHHHhh
Confidence 11223333 468999999999621 122222222222222 222233345555566666665554
No 287
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=94.97 E-value=0.19 Score=56.42 Aligned_cols=113 Identities=19% Similarity=0.297 Sum_probs=55.1
Q ss_pred eEEEEecCCCCccchHHHHHHHHHHhccCCCC-cEEEEE-cccHHHHHHHHHHHHHHhCCCCCCEEeEEeeccccCCCCC
Q 002552 299 VLVVSGETGCGKTTQLPQFILEEELSSLRGAD-CNIICT-QPRRISAISVAARVSSERGENLGETVGYQIRLESKRSAQT 376 (908)
Q Consensus 299 ~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~-~~ilv~-~P~r~la~qi~~rv~~~~~~~~g~~vg~~~~~~~~~~~~~ 376 (908)
+++|.|+||+|||+ ...++.+.+........ ..|=|. -+++ .|++..+...++.. ...|
T Consensus 44 n~~iyG~~GTGKT~-~~~~v~~~l~~~~~~~~~~yINc~~~~t~---~~i~~~i~~~~~~~--p~~g------------- 104 (366)
T COG1474 44 NIIIYGPTGTGKTA-TVKFVMEELEESSANVEVVYINCLELRTP---YQVLSKILNKLGKV--PLTG------------- 104 (366)
T ss_pred cEEEECCCCCCHhH-HHHHHHHHHHhhhccCceEEEeeeeCCCH---HHHHHHHHHHcCCC--CCCC-------------
Confidence 69999999999984 55566666554332221 112121 1222 23344444433310 0011
Q ss_pred cEEEEchHHHHHHHhcCCCCCcceEEEEechhccchhh--HHHHHHHHHHCccCCCCcEEEe
Q 002552 377 RLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNE--DFLLIILRDLLPRRPDLRLILM 436 (908)
Q Consensus 377 ~Iiv~T~g~Ll~~l~~~~~l~~~~~iIiDEaHeR~~~~--d~ll~~lk~~~~~~~~~qiIlm 436 (908)
..+...+-.+...-......-+||+||++. ..+. +.+..+++.--.. ..++++.
T Consensus 105 ---~~~~~~~~~l~~~~~~~~~~~IvvLDEid~-L~~~~~~~LY~L~r~~~~~--~~~v~vi 160 (366)
T COG1474 105 ---DSSLEILKRLYDNLSKKGKTVIVILDEVDA-LVDKDGEVLYSLLRAPGEN--KVKVSII 160 (366)
T ss_pred ---CchHHHHHHHHHHHHhcCCeEEEEEcchhh-hccccchHHHHHHhhcccc--ceeEEEE
Confidence 112222222222222356778999999994 2333 4666665543333 4444443
No 288
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=94.93 E-value=0.082 Score=56.01 Aligned_cols=120 Identities=20% Similarity=0.193 Sum_probs=61.4
Q ss_pred HHHHHHHHHH------hCCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCC
Q 002552 286 MKAEFLKAVA------ENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLG 359 (908)
Q Consensus 286 ~Q~~~i~~i~------~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~~~~~~~g 359 (908)
.|+..+.++. ..-+.+..||.|+|||..+..+..+..-. .-. |-|.+- ...+.++|..+
T Consensus 40 gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~~--~~~--------~~rvl~----lnaSderGisv- 104 (346)
T KOG0989|consen 40 GQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNCE--QLF--------PCRVLE----LNASDERGISV- 104 (346)
T ss_pred chHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcCc--ccc--------ccchhh----hcccccccccc-
Confidence 4555555543 24589999999999998777665543211 111 322221 11223333321
Q ss_pred CEEeEEeeccccCCCCCcEEEEchHHHHHHH-hcCC-CCCcceEEEEechhccchhhHHHHHHHHHHCccCCCCcEEEec
Q 002552 360 ETVGYQIRLESKRSAQTRLLFCTTGVLLRQL-VEDP-DLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILMS 437 (908)
Q Consensus 360 ~~vg~~~~~~~~~~~~~~Iiv~T~g~Ll~~l-~~~~-~l~~~~~iIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiIlmS 437 (908)
+ +.. +-....+.... ..++ ....+.+||+||||- +..|-...+.|.+.......+.|+..
T Consensus 105 ---v---r~K----------ik~fakl~~~~~~~~~~~~~~fKiiIlDEcds--mtsdaq~aLrr~mE~~s~~trFiLIc 166 (346)
T KOG0989|consen 105 ---V---REK----------IKNFAKLTVLLKRSDGYPCPPFKIIILDECDS--MTSDAQAALRRTMEDFSRTTRFILIC 166 (346)
T ss_pred ---h---hhh----------hcCHHHHhhccccccCCCCCcceEEEEechhh--hhHHHHHHHHHHHhccccceEEEEEc
Confidence 1 100 00111222212 1222 567889999999996 44555555555554434445555554
Q ss_pred c
Q 002552 438 A 438 (908)
Q Consensus 438 A 438 (908)
-
T Consensus 167 n 167 (346)
T KOG0989|consen 167 N 167 (346)
T ss_pred C
Confidence 3
No 289
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=94.92 E-value=0.08 Score=65.32 Aligned_cols=106 Identities=19% Similarity=0.114 Sum_probs=69.9
Q ss_pred chHHHHHHHHHHHhCCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCCEE
Q 002552 283 AFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLGETV 362 (908)
Q Consensus 283 i~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~~~~~~~g~~v 362 (908)
+.+-|.+++... ...++|.|..|||||+.+..-+...+... .-...+||++.-|+.+|.++.+|+.+..+..
T Consensus 10 Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~vl~~Ria~Li~~~-~v~p~~IL~lTFT~kAA~Em~~Rl~~~~~~~----- 81 (721)
T PRK11773 10 LNDKQREAVAAP--LGNMLVLAGAGSGKTRVLVHRIAWLMQVE-NASPYSIMAVTFTNKAAAEMRHRIEQLLGTS----- 81 (721)
T ss_pred cCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHHHHHHHHcC-CCChhHeEeeeccHHHHHHHHHHHHHHhccC-----
Confidence 456788887643 45789999999999987766655443221 2234589999999999999999998865421
Q ss_pred eEEeeccccCCCCCcEEEEchHHHH-HHHhcCC---CCCcceEEEEechhc
Q 002552 363 GYQIRLESKRSAQTRLLFCTTGVLL-RQLVEDP---DLSCVSHLLVDEIHE 409 (908)
Q Consensus 363 g~~~~~~~~~~~~~~Iiv~T~g~Ll-~~l~~~~---~l~~~~~iIiDEaHe 409 (908)
...+.|+|-..+. +.|.... .+. -.+-|+|+.+.
T Consensus 82 ------------~~~~~i~TfHs~~~~iLr~~~~~~g~~-~~f~i~d~~d~ 119 (721)
T PRK11773 82 ------------QGGMWVGTFHGLAHRLLRAHWQDANLP-QDFQILDSDDQ 119 (721)
T ss_pred ------------CCCCEEEcHHHHHHHHHHHHHHHhCCC-CCCeecCHHHH
Confidence 1246788866443 3333321 111 23457888774
No 290
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.90 E-value=0.16 Score=58.14 Aligned_cols=139 Identities=23% Similarity=0.208 Sum_probs=72.1
Q ss_pred EEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHH---HH-HH-hCC---CCCCEEeE-EeeccccC
Q 002552 302 VSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAAR---VS-SE-RGE---NLGETVGY-QIRLESKR 372 (908)
Q Consensus 302 i~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~r---v~-~~-~~~---~~g~~vg~-~~~~~~~~ 372 (908)
..+.||||||....-.||+..- +|-+.-+.++-.+-+|-...-.- ++ +. +.+ ..+..+.. .+..-+.-
T Consensus 2 f~matgsgkt~~ma~lil~~y~---kgyr~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ikkvn~fseh 78 (812)
T COG3421 2 FEMATGSGKTLVMAGLILECYK---KGYRNFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIKKVNNFSEH 78 (812)
T ss_pred cccccCCChhhHHHHHHHHHHH---hchhhEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeeeeecccCcc
Confidence 3578999999777666666532 22222344444444433222100 00 00 111 11122211 12222223
Q ss_pred CCCCcEEEEchHHHHHHHhcCC-------CCCcceEE-EEechhccchhh-----H------HHHHHHHHHCccCCCCcE
Q 002552 373 SAQTRLLFCTTGVLLRQLVEDP-------DLSCVSHL-LVDEIHERGMNE-----D------FLLIILRDLLPRRPDLRL 433 (908)
Q Consensus 373 ~~~~~Iiv~T~g~Ll~~l~~~~-------~l~~~~~i-IiDEaHeR~~~~-----d------~ll~~lk~~~~~~~~~qi 433 (908)
+.+-.|.|+|.+.|...+.+.. .|.+..+| +-||+|+....+ | -....++.....+++--+
T Consensus 79 nd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~la~~~nkd~~~ 158 (812)
T COG3421 79 NDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVKLALEQNKDNLL 158 (812)
T ss_pred CCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHHHHHhcCCCcee
Confidence 4567899999998877775532 34555544 559999621110 1 112234445567778788
Q ss_pred EEecccCChH
Q 002552 434 ILMSATINAD 443 (908)
Q Consensus 434 IlmSAT~~~~ 443 (908)
+.+|||.+.+
T Consensus 159 lef~at~~k~ 168 (812)
T COG3421 159 LEFSATIPKE 168 (812)
T ss_pred ehhhhcCCcc
Confidence 8899999744
No 291
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.86 E-value=0.13 Score=61.01 Aligned_cols=31 Identities=35% Similarity=0.473 Sum_probs=21.7
Q ss_pred HHHHHHhCC---eEEEEecCCCCccchHHHHHHH
Q 002552 290 FLKAVAENQ---VLVVSGETGCGKTTQLPQFILE 320 (908)
Q Consensus 290 ~i~~i~~~~---~vii~a~TGSGKTt~~~~~il~ 320 (908)
+...+.+++ .+|++||.|+|||+.+-.+...
T Consensus 28 L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~ 61 (624)
T PRK14959 28 LSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKA 61 (624)
T ss_pred HHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHh
Confidence 334444544 5889999999999877665543
No 292
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=94.86 E-value=0.097 Score=62.72 Aligned_cols=138 Identities=22% Similarity=0.220 Sum_probs=80.1
Q ss_pred CchHHHHHHHHH---HHh--CCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCC
Q 002552 282 PAFKMKAEFLKA---VAE--NQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGE 356 (908)
Q Consensus 282 pi~~~Q~~~i~~---i~~--~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~~~~~ 356 (908)
+.+.-|.++++. +.+ .+.++++|.-|=|||.++=+.+.-.... .+ ...|+||.|+.+.+.++++..-+-+.
T Consensus 211 ~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~~~~~--~~-~~~iiVTAP~~~nv~~Lf~fa~~~l~- 286 (758)
T COG1444 211 CLTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALAAAARL--AG-SVRIIVTAPTPANVQTLFEFAGKGLE- 286 (758)
T ss_pred hcChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHHHHHh--cC-CceEEEeCCCHHHHHHHHHHHHHhHH-
Confidence 334445554444 333 3489999999999998887666322211 11 45899999999999988765543221
Q ss_pred CCCCE--EeEEeeccc--cCCCCCcEEEEchHHHHHHHhcCCCCCcceEEEEechhccchhhHHHHHHHHHHCccCCCCc
Q 002552 357 NLGET--VGYQIRLES--KRSAQTRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLR 432 (908)
Q Consensus 357 ~~g~~--vg~~~~~~~--~~~~~~~Iiv~T~g~Ll~~l~~~~~l~~~~~iIiDEaHeR~~~~d~ll~~lk~~~~~~~~~q 432 (908)
.+|.. |-+....+. .......|-|.+|.... ..-++||||||=- +...++..+++. .+
T Consensus 287 ~lg~~~~v~~d~~g~~~~~~~~~~~i~y~~P~~a~---------~~~DllvVDEAAa--IplplL~~l~~~-------~~ 348 (758)
T COG1444 287 FLGYKRKVAPDALGEIREVSGDGFRIEYVPPDDAQ---------EEADLLVVDEAAA--IPLPLLHKLLRR-------FP 348 (758)
T ss_pred HhCCccccccccccceeeecCCceeEEeeCcchhc---------ccCCEEEEehhhc--CChHHHHHHHhh-------cC
Confidence 11111 111100000 11123457777775443 1267999999963 555555444432 36
Q ss_pred EEEecccCC
Q 002552 433 LILMSATIN 441 (908)
Q Consensus 433 iIlmSAT~~ 441 (908)
.++||.|++
T Consensus 349 rv~~sTTIh 357 (758)
T COG1444 349 RVLFSTTIH 357 (758)
T ss_pred ceEEEeeec
Confidence 799999994
No 293
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=94.81 E-value=0.19 Score=57.34 Aligned_cols=126 Identities=20% Similarity=0.194 Sum_probs=66.7
Q ss_pred CeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCCEEeEEeeccccCCCCCc
Q 002552 298 QVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLGETVGYQIRLESKRSAQTR 377 (908)
Q Consensus 298 ~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~~~~~~~g~~vg~~~~~~~~~~~~~~ 377 (908)
.+++++|++||||||.+..++...... .+....++..=+.|..|.+..++.+...+.. +- .....
T Consensus 100 ~vi~~vG~~GsGKTTtaakLA~~l~~~--~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp----~~-~~~~~-------- 164 (428)
T TIGR00959 100 TVILMVGLQGSGKTTTCGKLAYYLKKK--QGKKVLLVACDLYRPAAIEQLKVLGQQVGVP----VF-ALGKG-------- 164 (428)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHh--CCCeEEEEeccccchHHHHHHHHHHHhcCCc----eE-ecCCC--------
Confidence 478999999999999877766553211 2334444555577777766555555544322 11 00000
Q ss_pred EEEEchHHHH-HHHhcCCCCCcceEEEEechhccchhhHHHHHHHHHHCc-cCCCCcEEEecccCChH
Q 002552 378 LLFCTTGVLL-RQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLP-RRPDLRLILMSATINAD 443 (908)
Q Consensus 378 Iiv~T~g~Ll-~~l~~~~~l~~~~~iIiDEaHeR~~~~d~ll~~lk~~~~-~~~~~qiIlmSAT~~~~ 443 (908)
..|.-+. +.+.. .....+++||||=+- |....+-+...++.+.. ..|+--+++++||...+
T Consensus 165 ---~~P~~i~~~al~~-~~~~~~DvVIIDTaG-r~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq~ 227 (428)
T TIGR00959 165 ---QSPVEIARRALEY-AKENGFDVVIVDTAG-RLQIDEELMEELAAIKEILNPDEILLVVDAMTGQD 227 (428)
T ss_pred ---CCHHHHHHHHHHH-HHhcCCCEEEEeCCC-ccccCHHHHHHHHHHHHhhCCceEEEEEeccchHH
Confidence 0122221 11111 112568999999998 53322223333333322 34555677888886433
No 294
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=94.76 E-value=0.062 Score=58.91 Aligned_cols=56 Identities=23% Similarity=0.337 Sum_probs=36.9
Q ss_pred HHHHHHH-HHHHhCCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHH
Q 002552 285 KMKAEFL-KAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISA 343 (908)
Q Consensus 285 ~~Q~~~i-~~i~~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la 343 (908)
+.|.+.+ .++..+.+++|+|+|||||||.+- .++..+... ....+++++..+.|+.
T Consensus 131 ~~~~~~L~~~v~~~~nilI~G~tGSGKTTll~-aL~~~i~~~--~~~~rivtiEd~~El~ 187 (323)
T PRK13833 131 EAQASVIRSAIDSRLNIVISGGTGSGKTTLAN-AVIAEIVAS--APEDRLVILEDTAEIQ 187 (323)
T ss_pred HHHHHHHHHHHHcCCeEEEECCCCCCHHHHHH-HHHHHHhcC--CCCceEEEecCCcccc
Confidence 3444444 446677899999999999998663 344433211 1245888888888863
No 295
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=94.76 E-value=0.12 Score=50.44 Aligned_cols=24 Identities=42% Similarity=0.530 Sum_probs=19.2
Q ss_pred eEEEEecCCCCccchHHHHHHHHH
Q 002552 299 VLVVSGETGCGKTTQLPQFILEEE 322 (908)
Q Consensus 299 ~vii~a~TGSGKTt~~~~~il~~~ 322 (908)
.++|+|++|+|||+.+..++....
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~ 24 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIA 24 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHH
Confidence 368999999999987777766553
No 296
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=94.75 E-value=0.14 Score=58.45 Aligned_cols=22 Identities=27% Similarity=0.442 Sum_probs=17.7
Q ss_pred CeEEEEecCCCCccchHHHHHH
Q 002552 298 QVLVVSGETGCGKTTQLPQFIL 319 (908)
Q Consensus 298 ~~vii~a~TGSGKTt~~~~~il 319 (908)
.+++|.||+|+|||+.+-..+-
T Consensus 56 ~~~lI~G~~GtGKT~l~~~v~~ 77 (394)
T PRK00411 56 LNVLIYGPPGTGKTTTVKKVFE 77 (394)
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 6799999999999976655443
No 297
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=94.70 E-value=0.038 Score=67.61 Aligned_cols=118 Identities=14% Similarity=0.129 Sum_probs=69.1
Q ss_pred CCchHHHHHHHHHHHhCCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHH---HHHHHHhCCC
Q 002552 281 LPAFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVA---ARVSSERGEN 357 (908)
Q Consensus 281 lpi~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~---~rv~~~~~~~ 357 (908)
+-.|..|--.=-++.+|+ |..+.||=|||+.+.+|++-.++. |.+ .-|||+.-- ||.-=+ ..+-.++
T Consensus 168 m~~yDVQliGgivLh~G~--IAEM~TGEGKTLvAtlp~yLnAL~---Gkg-VHvVTVNDY-LA~RDaewmgply~fL--- 237 (1112)
T PRK12901 168 MVHYDVQLIGGVVLHQGK--IAEMATGEGKTLVATLPVYLNALT---GNG-VHVVTVNDY-LAKRDSEWMGPLYEFH--- 237 (1112)
T ss_pred CcccchHHhhhhhhcCCc--eeeecCCCCchhHHHHHHHHHHHc---CCC-cEEEEechh-hhhccHHHHHHHHHHh---
Confidence 445566654444455555 899999999999988888776653 333 345555432 332212 2233333
Q ss_pred CCCEEeEEeec-----cccCCCCCcEEEEchH-----HHHHHHhcCC---CCCcceEEEEechhc
Q 002552 358 LGETVGYQIRL-----ESKRSAQTRLLFCTTG-----VLLRQLVEDP---DLSCVSHLLVDEIHE 409 (908)
Q Consensus 358 ~g~~vg~~~~~-----~~~~~~~~~Iiv~T~g-----~Ll~~l~~~~---~l~~~~~iIiDEaHe 409 (908)
|.+||..... +.+..=.++|+|+|.. .|-+-+...+ ....+.+.||||||.
T Consensus 238 -GLsvg~i~~~~~~~~~rr~aY~~DItYgTn~EfGFDYLRDnm~~~~~~~vqR~~~fAIVDEvDS 301 (1112)
T PRK12901 238 -GLSVDCIDKHQPNSEARRKAYNADITYGTNNEFGFDYLRDNMAHSPEDLVQRKHNYAIVDEVDS 301 (1112)
T ss_pred -CCceeecCCCCCCHHHHHHhCCCcceecCCCccccccchhccccchHhhhCcCCceeEeechhh
Confidence 5556643221 1111237899999975 3344343333 456789999999994
No 298
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=94.66 E-value=0.17 Score=58.55 Aligned_cols=47 Identities=23% Similarity=0.151 Sum_probs=28.0
Q ss_pred CeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHH
Q 002552 298 QVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAA 348 (908)
Q Consensus 298 ~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~ 348 (908)
+.+++.|++|+|||..+ +.+...+... .++.+++++.. ..+...+..
T Consensus 142 npl~i~G~~G~GKTHLl-~Ai~~~l~~~--~~~~~v~yv~~-~~f~~~~~~ 188 (450)
T PRK14087 142 NPLFIYGESGMGKTHLL-KAAKNYIESN--FSDLKVSYMSG-DEFARKAVD 188 (450)
T ss_pred CceEEECCCCCcHHHHH-HHHHHHHHHh--CCCCeEEEEEH-HHHHHHHHH
Confidence 45899999999999544 4555444322 22456676544 444444433
No 299
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=94.56 E-value=0.041 Score=51.73 Aligned_cols=19 Identities=32% Similarity=0.538 Sum_probs=14.9
Q ss_pred EEEEecCCCCccchHHHHH
Q 002552 300 LVVSGETGCGKTTQLPQFI 318 (908)
Q Consensus 300 vii~a~TGSGKTt~~~~~i 318 (908)
+++.||.|+|||+.+-..+
T Consensus 1 ill~G~~G~GKT~l~~~la 19 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALA 19 (132)
T ss_dssp EEEESSTTSSHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHH
Confidence 6899999999997554443
No 300
>cd02639 R3H_RRM R3H domain of mainly fungal proteins which are associated with a RNA recognition motif (RRM) domain. Present in this group is the RNA-binding post-transcriptional regulator Cip2 (Csx1-interacting protein 2) involved in counteracting Csx1 function. Csx1 plays a central role in controlling gene expression during oxidative stress. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=94.52 E-value=0.054 Score=43.26 Aligned_cols=37 Identities=22% Similarity=0.372 Sum_probs=34.4
Q ss_pred cceeeccccCCchhHHHHHHHHHhcCcceeeecCCce
Q 002552 133 EQEMIIKRKFSRADQQTLADMAHQLGLHFHAYNKGKA 169 (908)
Q Consensus 133 ~~e~~~~~~~s~~e~~~i~~~a~~~gl~~~~~~~g~~ 169 (908)
..++.|+++++..++..+|.+|.++|+...+.|.|..
T Consensus 17 ~~eL~Fp~~ls~~eRriih~la~~lGL~~~s~G~g~~ 53 (60)
T cd02639 17 RDELAFPSSLSPAERRIVHLLASRLGLNHVSDGTGER 53 (60)
T ss_pred ceEEEcCCCCCHHHHHHHHHHHHHcCCceEEeCCCce
Confidence 6799999999999999999999999999999887765
No 301
>PRK08939 primosomal protein DnaI; Reviewed
Probab=94.51 E-value=0.51 Score=51.66 Aligned_cols=113 Identities=14% Similarity=0.190 Sum_probs=59.7
Q ss_pred hCCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCCEEeEEeeccccCCCC
Q 002552 296 ENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLGETVGYQIRLESKRSAQ 375 (908)
Q Consensus 296 ~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~~~~~~~g~~vg~~~~~~~~~~~~ 375 (908)
.++.+++.|++|+|||..+.....+. .. .+.. ..++..| .++..+.. ..+. +
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l-~~--~g~~-v~~~~~~--~l~~~lk~----~~~~------------------~ 206 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANEL-AK--KGVS-STLLHFP--EFIRELKN----SISD------------------G 206 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH-HH--cCCC-EEEEEHH--HHHHHHHH----HHhc------------------C
Confidence 35689999999999996555443333 22 2222 2344445 33333322 1110 0
Q ss_pred CcEEEEchHHHHHHHhcCCCCCcceEEEEechhccchhhHHHH-HHHHHHCccC-CCCcEEEecccCChHHHHhhh
Q 002552 376 TRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLL-IILRDLLPRR-PDLRLILMSATINADLFSKYF 449 (908)
Q Consensus 376 ~~Iiv~T~g~Ll~~l~~~~~l~~~~~iIiDEaHeR~~~~d~ll-~~lk~~~~~~-~~~qiIlmSAT~~~~~~~~~f 449 (908)
+...+++. +.++++|||||+.--. .+++.. .++-.++..| .+-+-.++|.-++.+.+.+.|
T Consensus 207 ------~~~~~l~~------l~~~dlLiIDDiG~e~-~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl~~~el~~~~ 269 (306)
T PRK08939 207 ------SVKEKIDA------VKEAPVLMLDDIGAEQ-MSSWVRDEVLGVILQYRMQEELPTFFTSNFDFDELEHHL 269 (306)
T ss_pred ------cHHHHHHH------hcCCCEEEEecCCCcc-ccHHHHHHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHH
Confidence 11233333 3689999999998322 222222 2333332222 233556677777777777766
No 302
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=94.49 E-value=0.077 Score=57.88 Aligned_cols=95 Identities=21% Similarity=0.272 Sum_probs=56.4
Q ss_pred HHHHHHHHhCCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCCEEeEEee
Q 002552 288 AEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLGETVGYQIR 367 (908)
Q Consensus 288 ~~~i~~i~~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~~~~~~~g~~vg~~~~ 367 (908)
..+..++..+++++|+|+|||||||.+-. ++..+.. ..+..+|+++.-+.|+... . ...+.....
T Consensus 123 ~~L~~~v~~~~~ilI~G~tGSGKTTll~a-l~~~i~~--~~~~~ri~tiEd~~El~~~---------~---~~~v~~~~~ 187 (299)
T TIGR02782 123 DVLREAVLARKNILVVGGTGSGKTTLANA-LLAEIAK--NDPTDRVVIIEDTRELQCA---------A---PNVVQLRTS 187 (299)
T ss_pred HHHHHHHHcCCeEEEECCCCCCHHHHHHH-HHHHhhc--cCCCceEEEECCchhhcCC---------C---CCEEEEEec
Confidence 33455567788999999999999986643 3333321 1124588999988887421 1 122222221
Q ss_pred ccccCCCCCcEEEEchHHHHHHHhcCCCCCcceEEEEechhccchh
Q 002552 368 LESKRSAQTRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMN 413 (908)
Q Consensus 368 ~~~~~~~~~~Iiv~T~g~Ll~~l~~~~~l~~~~~iIiDEaHeR~~~ 413 (908)
.+. .|...+++...+ .+-+.||+.|+ |+..
T Consensus 188 ------~~~----~~~~~~l~~aLR----~~pD~iivGEi--R~~e 217 (299)
T TIGR02782 188 ------DDA----ISMTRLLKATLR----LRPDRIIVGEV--RGGE 217 (299)
T ss_pred ------CCC----CCHHHHHHHHhc----CCCCEEEEecc--CCHH
Confidence 111 166666655432 35689999999 6544
No 303
>PRK06921 hypothetical protein; Provisional
Probab=94.47 E-value=0.27 Score=52.76 Aligned_cols=21 Identities=29% Similarity=0.523 Sum_probs=17.1
Q ss_pred hCCeEEEEecCCCCccchHHH
Q 002552 296 ENQVLVVSGETGCGKTTQLPQ 316 (908)
Q Consensus 296 ~~~~vii~a~TGSGKTt~~~~ 316 (908)
.+..+++.|+||+|||+.+..
T Consensus 116 ~~~~l~l~G~~G~GKThLa~a 136 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTA 136 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHH
Confidence 367899999999999965543
No 304
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=94.47 E-value=0.24 Score=53.11 Aligned_cols=22 Identities=27% Similarity=0.317 Sum_probs=17.5
Q ss_pred CCeEEEEecCCCCccchHHHHH
Q 002552 297 NQVLVVSGETGCGKTTQLPQFI 318 (908)
Q Consensus 297 ~~~vii~a~TGSGKTt~~~~~i 318 (908)
..++++.||+|||||+.+-.+.
T Consensus 42 ~~~vll~GppGtGKTtlA~~ia 63 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVARILG 63 (261)
T ss_pred cceEEEEcCCCCCHHHHHHHHH
Confidence 3578999999999998665543
No 305
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=94.43 E-value=0.23 Score=54.47 Aligned_cols=60 Identities=20% Similarity=0.265 Sum_probs=39.3
Q ss_pred EEEEchHHHHHHHhcCCCCCcceEEEEechhccchhhHHHHHHHHHHCccCCCCcEEEeccc
Q 002552 378 LLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILMSAT 439 (908)
Q Consensus 378 Iiv~T~g~Ll~~l~~~~~l~~~~~iIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiIlmSAT 439 (908)
|.|-.---+.+.+...+....++++||||||. ++..-.-.+||.+..-.++..+|+.|..
T Consensus 93 I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~--m~~~AaNaLLKtLEEPp~~~~fiL~~~~ 152 (319)
T PRK08769 93 IVIEQVREISQKLALTPQYGIAQVVIVDPADA--INRAACNALLKTLEEPSPGRYLWLISAQ 152 (319)
T ss_pred ccHHHHHHHHHHHhhCcccCCcEEEEeccHhh--hCHHHHHHHHHHhhCCCCCCeEEEEECC
Confidence 33333334555555566667899999999995 4556667778876665556666666544
No 306
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=94.37 E-value=0.13 Score=60.10 Aligned_cols=39 Identities=15% Similarity=0.265 Sum_probs=25.2
Q ss_pred HHHHHhcCCCCCcceEEEEechhccchhhHHHHHHHHHHCc
Q 002552 386 LLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLP 426 (908)
Q Consensus 386 Ll~~l~~~~~l~~~~~iIiDEaHeR~~~~d~ll~~lk~~~~ 426 (908)
++......|...++.++||||+|. +...-...+++.+..
T Consensus 116 iie~a~~~P~~~~~KVvIIDEa~~--Ls~~a~naLLk~LEe 154 (507)
T PRK06645 116 IIESAEYKPLQGKHKIFIIDEVHM--LSKGAFNALLKTLEE 154 (507)
T ss_pred HHHHHHhccccCCcEEEEEEChhh--cCHHHHHHHHHHHhh
Confidence 444445556778899999999994 334444455555544
No 307
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.30 E-value=0.24 Score=59.15 Aligned_cols=50 Identities=20% Similarity=0.359 Sum_probs=31.0
Q ss_pred HHHHHhcCCCCCcceEEEEechhccchhhHHHHHHHHHHCccCCCCcEEEec
Q 002552 386 LLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILMS 437 (908)
Q Consensus 386 Ll~~l~~~~~l~~~~~iIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiIlmS 437 (908)
|...+...|...+++++||||+|. +..+-...++|.+..-.+...+|+.+
T Consensus 107 l~~~~~~~p~~~~~KVvIIdev~~--Lt~~a~naLLk~LEepp~~~~fIl~t 156 (576)
T PRK14965 107 LRENVKYLPSRSRYKIFIIDEVHM--LSTNAFNALLKTLEEPPPHVKFIFAT 156 (576)
T ss_pred HHHHHHhccccCCceEEEEEChhh--CCHHHHHHHHHHHHcCCCCeEEEEEe
Confidence 444444456678899999999994 34444556666665444445555443
No 308
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=94.28 E-value=0.1 Score=59.87 Aligned_cols=70 Identities=23% Similarity=0.266 Sum_probs=48.0
Q ss_pred HHHHHHHHHH--hCCeEEEEecCCCCccchHHHHHHHHHHhccCC-CCcEEEEEcccHHHHHHHHHHHHHHhCC
Q 002552 286 MKAEFLKAVA--ENQVLVVSGETGCGKTTQLPQFILEEELSSLRG-ADCNIICTQPRRISAISVAARVSSERGE 356 (908)
Q Consensus 286 ~Q~~~i~~i~--~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~-~~~~ilv~~P~r~la~qi~~rv~~~~~~ 356 (908)
+|.+-=++|. .++.+||+|..||||||++++-+...++..... ....|+|+.|.|....-++..+ -++|+
T Consensus 213 IQkEQneIIR~ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlvl~PN~vFleYis~VL-PeLGe 285 (747)
T COG3973 213 IQKEQNEIIRFEKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLVLGPNRVFLEYISRVL-PELGE 285 (747)
T ss_pred hhHhHHHHHhccCCCeEEEecCCCCCchhHHHHHHHHHHhccccccccCceEEEcCcHHHHHHHHHhc-hhhcc
Confidence 4444444444 577899999999999999988766665543211 2234999999999988876544 44443
No 309
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=94.27 E-value=0.31 Score=51.80 Aligned_cols=116 Identities=20% Similarity=0.260 Sum_probs=65.9
Q ss_pred HHHhCCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCCEEeEEeeccccC
Q 002552 293 AVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLGETVGYQIRLESKR 372 (908)
Q Consensus 293 ~i~~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~~~~~~~g~~vg~~~~~~~~~ 372 (908)
-+.++.++++.|++|+|||..+..+..+.. .. +..|++ .++-+++.++..-... +
T Consensus 101 ~~~~~~nl~l~G~~G~GKThLa~Ai~~~l~-~~----g~sv~f-~~~~el~~~Lk~~~~~--~----------------- 155 (254)
T COG1484 101 FFERGENLVLLGPPGVGKTHLAIAIGNELL-KA----GISVLF-ITAPDLLSKLKAAFDE--G----------------- 155 (254)
T ss_pred HhccCCcEEEECCCCCcHHHHHHHHHHHHH-Hc----CCeEEE-EEHHHHHHHHHHHHhc--C-----------------
Confidence 334788999999999999965554444433 21 234443 3666676665443311 0
Q ss_pred CCCCcEEEEchHHHHHHHhcCCCCCcceEEEEechhccc---hhhHHHHHHHHHHCccCCCCcEEEecccCChHHHHhhh
Q 002552 373 SAQTRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERG---MNEDFLLIILRDLLPRRPDLRLILMSATINADLFSKYF 449 (908)
Q Consensus 373 ~~~~~Iiv~T~g~Ll~~l~~~~~l~~~~~iIiDEaHeR~---~~~d~ll~~lk~~~~~~~~~qiIlmSAT~~~~~~~~~f 449 (908)
.....|++.+ .++++|||||+=-.. ...+.+.+++-..... ..+ +++.-.+.+.+.+.|
T Consensus 156 --------~~~~~l~~~l------~~~dlLIiDDlG~~~~~~~~~~~~~q~I~~r~~~---~~~-~~tsN~~~~~~~~~~ 217 (254)
T COG1484 156 --------RLEEKLLREL------KKVDLLIIDDIGYEPFSQEEADLLFQLISRRYES---RSL-IITSNLSFGEWDELF 217 (254)
T ss_pred --------chHHHHHHHh------hcCCEEEEecccCccCCHHHHHHHHHHHHHHHhh---ccc-eeecCCChHHHHhhc
Confidence 0233455544 689999999987321 1234444443332222 223 667677777776666
Q ss_pred CC
Q 002552 450 GN 451 (908)
Q Consensus 450 ~~ 451 (908)
+.
T Consensus 218 ~~ 219 (254)
T COG1484 218 GD 219 (254)
T ss_pred cC
Confidence 53
No 310
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=94.24 E-value=0.22 Score=56.20 Aligned_cols=21 Identities=29% Similarity=0.444 Sum_probs=16.9
Q ss_pred CeEEEEecCCCCccchHHHHH
Q 002552 298 QVLVVSGETGCGKTTQLPQFI 318 (908)
Q Consensus 298 ~~vii~a~TGSGKTt~~~~~i 318 (908)
.+++|.||+|+|||+.+-.++
T Consensus 41 ~~i~I~G~~GtGKT~l~~~~~ 61 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAVTKYVM 61 (365)
T ss_pred CcEEEECCCCCCHHHHHHHHH
Confidence 589999999999997654443
No 311
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=94.22 E-value=0.18 Score=55.87 Aligned_cols=60 Identities=15% Similarity=0.098 Sum_probs=39.1
Q ss_pred EEEEchHHHHHHHhcCCCCCcceEEEEechhccchhhHHHHHHHHHHCccCCCCcEEEeccc
Q 002552 378 LLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILMSAT 439 (908)
Q Consensus 378 Iiv~T~g~Ll~~l~~~~~l~~~~~iIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiIlmSAT 439 (908)
|.|-.---|.+.+...+....++++|||+||. ++..-.-.+||.+..-.++.-+|+.|..
T Consensus 112 I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~--m~~~AaNaLLKtLEEPp~~t~fiL~t~~ 171 (342)
T PRK06964 112 IKIEQVRALLDFCGVGTHRGGARVVVLYPAEA--LNVAAANALLKTLEEPPPGTVFLLVSAR 171 (342)
T ss_pred cCHHHHHHHHHHhccCCccCCceEEEEechhh--cCHHHHHHHHHHhcCCCcCcEEEEEECC
Confidence 44444445666666566678899999999995 4555566778877654445555555544
No 312
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=94.16 E-value=0.2 Score=49.96 Aligned_cols=46 Identities=17% Similarity=0.329 Sum_probs=28.0
Q ss_pred CcceEEEEechhccchhhHHHHHHHHHHCc-cCCCCcEEEecccCChH
Q 002552 397 SCVSHLLVDEIHERGMNEDFLLIILRDLLP-RRPDLRLILMSATINAD 443 (908)
Q Consensus 397 ~~~~~iIiDEaHeR~~~~d~ll~~lk~~~~-~~~~~qiIlmSAT~~~~ 443 (908)
.++++||+|.......+.+.+..+ +.+.. ..++--++.++|+...+
T Consensus 81 ~~~d~viiDt~g~~~~~~~~l~~l-~~l~~~~~~~~~~lVv~~~~~~~ 127 (173)
T cd03115 81 ENFDVVIVDTAGRLQIDENLMEEL-KKIKRVVKPDEVLLVVDAMTGQD 127 (173)
T ss_pred CCCCEEEEECcccchhhHHHHHHH-HHHHhhcCCCeEEEEEECCCChH
Confidence 478899999998433444444333 33332 34666777888865444
No 313
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=94.14 E-value=0.26 Score=55.89 Aligned_cols=51 Identities=14% Similarity=0.229 Sum_probs=31.0
Q ss_pred HHHHHhcCCCCCcceEEEEechhccchhhHHHHHHHHHHCccCCCCcEEEeccc
Q 002552 386 LLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILMSAT 439 (908)
Q Consensus 386 Ll~~l~~~~~l~~~~~iIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiIlmSAT 439 (908)
+.+.+...+...+++++||||+|. ++......++|.+.. .|+-.++++.||
T Consensus 105 l~~~~~~~p~~~~~kViiIDead~--m~~~aanaLLk~LEe-p~~~~~fIL~a~ 155 (394)
T PRK07940 105 LVTIAARRPSTGRWRIVVIEDADR--LTERAANALLKAVEE-PPPRTVWLLCAP 155 (394)
T ss_pred HHHHHHhCcccCCcEEEEEechhh--cCHHHHHHHHHHhhc-CCCCCeEEEEEC
Confidence 444444455567889999999994 344444556665543 344455555555
No 314
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=94.13 E-value=0.23 Score=59.06 Aligned_cols=39 Identities=15% Similarity=0.263 Sum_probs=26.0
Q ss_pred HHHHHhcCCCCCcceEEEEechhccchhhHHHHHHHHHHCc
Q 002552 386 LLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLP 426 (908)
Q Consensus 386 Ll~~l~~~~~l~~~~~iIiDEaHeR~~~~d~ll~~lk~~~~ 426 (908)
+...+...|....+.++||||+|. +..+-.-.++|.+..
T Consensus 107 i~~~v~~~p~~~~~kViIIDE~~~--Lt~~a~naLLKtLEe 145 (559)
T PRK05563 107 IRDKVKYAPSEAKYKVYIIDEVHM--LSTGAFNALLKTLEE 145 (559)
T ss_pred HHHHHhhCcccCCeEEEEEECccc--CCHHHHHHHHHHhcC
Confidence 444444456678899999999994 344455566666544
No 315
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=94.10 E-value=0.16 Score=55.87 Aligned_cols=27 Identities=30% Similarity=0.439 Sum_probs=20.2
Q ss_pred HHHHhCC--eEEEEecCCCCccchHHHHH
Q 002552 292 KAVAENQ--VLVVSGETGCGKTTQLPQFI 318 (908)
Q Consensus 292 ~~i~~~~--~vii~a~TGSGKTt~~~~~i 318 (908)
.++..++ ..|+.||+|+||||.+-+..
T Consensus 41 r~v~~~~l~SmIl~GPPG~GKTTlA~liA 69 (436)
T COG2256 41 RAVEAGHLHSMILWGPPGTGKTTLARLIA 69 (436)
T ss_pred HHHhcCCCceeEEECCCCCCHHHHHHHHH
Confidence 4455554 78999999999998665543
No 316
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=94.04 E-value=0.17 Score=58.45 Aligned_cols=38 Identities=26% Similarity=0.318 Sum_probs=23.7
Q ss_pred CeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcc
Q 002552 298 QVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQP 338 (908)
Q Consensus 298 ~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P 338 (908)
+.+++.||+|+|||..+ +.+...+... .+..+++++..
T Consensus 131 n~l~lyG~~G~GKTHLl-~ai~~~l~~~--~~~~~v~yi~~ 168 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLL-QSIGNYVVQN--EPDLRVMYITS 168 (440)
T ss_pred CeEEEEcCCCCcHHHHH-HHHHHHHHHh--CCCCeEEEEEH
Confidence 46999999999999544 3344443322 22456777643
No 317
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.03 E-value=0.3 Score=55.78 Aligned_cols=48 Identities=19% Similarity=0.233 Sum_probs=27.4
Q ss_pred HHHHHhcCCCCCcceEEEEechhccchhhHHHHHHHHHHCccCCCCcEEE
Q 002552 386 LLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLIL 435 (908)
Q Consensus 386 Ll~~l~~~~~l~~~~~iIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiIl 435 (908)
+...+...|...+..+|||||+|.. ..+-...+++.+....+...+|+
T Consensus 115 l~~~~~~~p~~~~~kvvIIdea~~l--~~~~~~~LLk~LEep~~~t~~Il 162 (397)
T PRK14955 115 LRENVRYGPQKGRYRVYIIDEVHML--SIAAFNAFLKTLEEPPPHAIFIF 162 (397)
T ss_pred HHHHHhhchhcCCeEEEEEeChhhC--CHHHHHHHHHHHhcCCCCeEEEE
Confidence 3444555567789999999999953 22233344555433333333343
No 318
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=94.02 E-value=0.12 Score=60.96 Aligned_cols=51 Identities=14% Similarity=0.178 Sum_probs=29.7
Q ss_pred HHHHHHhcCCCCCcceEEEEechhccchhhHHHHHHHHHHCccCCCCcEEEec
Q 002552 385 VLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILMS 437 (908)
Q Consensus 385 ~Ll~~l~~~~~l~~~~~iIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiIlmS 437 (908)
.+.+.+...|......++||||||. +..+-.-.+++.+....+...+|+++
T Consensus 106 eIi~~~~~~P~~~~~KVIIIDEad~--Lt~~A~NaLLKtLEEPp~~tvfIL~T 156 (605)
T PRK05896 106 NIIDNINYLPTTFKYKVYIIDEAHM--LSTSAWNALLKTLEEPPKHVVFIFAT 156 (605)
T ss_pred HHHHHHHhchhhCCcEEEEEechHh--CCHHHHHHHHHHHHhCCCcEEEEEEC
Confidence 3444444555667789999999994 33334445555554433344455544
No 319
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=93.99 E-value=0.19 Score=55.64 Aligned_cols=53 Identities=25% Similarity=0.313 Sum_probs=31.8
Q ss_pred hHHHHHHHhcCCCCCcceEEEEechhccchhhHHHHHHHHHHCccCCCCcEEEec
Q 002552 383 TGVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILMS 437 (908)
Q Consensus 383 ~g~Ll~~l~~~~~l~~~~~iIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiIlmS 437 (908)
...+.+.....+......+|||||||. +..|-.-.++|.+....++..+|+.+
T Consensus 94 vr~~~~~~~~~~~~~~~kviiidead~--mt~~A~nallk~lEep~~~~~~il~~ 146 (325)
T COG0470 94 VRELAEFLSESPLEGGYKVVIIDEADK--LTEDAANALLKTLEEPPKNTRFILIT 146 (325)
T ss_pred HHHHHHHhccCCCCCCceEEEeCcHHH--HhHHHHHHHHHHhccCCCCeEEEEEc
Confidence 333444443344457899999999995 44455556666655544455555544
No 320
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=93.99 E-value=0.062 Score=59.57 Aligned_cols=48 Identities=19% Similarity=0.239 Sum_probs=33.6
Q ss_pred HHHHHHhCCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHH
Q 002552 290 FLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISA 343 (908)
Q Consensus 290 ~i~~i~~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la 343 (908)
+..++..+.+++|+|+|||||||.+-. ++..+ ....+++.+..+.|+.
T Consensus 155 l~~~v~~~~nilI~G~tGSGKTTll~a-Ll~~i-----~~~~rivtiEd~~El~ 202 (344)
T PRK13851 155 LHACVVGRLTMLLCGPTGSGKTTMSKT-LISAI-----PPQERLITIEDTLELV 202 (344)
T ss_pred HHHHHHcCCeEEEECCCCccHHHHHHH-HHccc-----CCCCCEEEECCCcccc
Confidence 344466789999999999999985533 33322 2245788888887764
No 321
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=93.97 E-value=0.33 Score=50.43 Aligned_cols=104 Identities=20% Similarity=0.223 Sum_probs=54.3
Q ss_pred CeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCCEEeEEeeccccCCCCCc
Q 002552 298 QVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLGETVGYQIRLESKRSAQTR 377 (908)
Q Consensus 298 ~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~~~~~~~g~~vg~~~~~~~~~~~~~~ 377 (908)
+-++|.|++|+|||. +.+.+...+.... +..+|+++.. .+....+...+..
T Consensus 35 ~~l~l~G~~G~GKTH-LL~Ai~~~~~~~~--~~~~v~y~~~-~~f~~~~~~~~~~------------------------- 85 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTH-LLQAIANEAQKQH--PGKRVVYLSA-EEFIREFADALRD------------------------- 85 (219)
T ss_dssp SEEEEEESTTSSHHH-HHHHHHHHHHHHC--TTS-EEEEEH-HHHHHHHHHHHHT-------------------------
T ss_pred CceEEECCCCCCHHH-HHHHHHHHHHhcc--ccccceeecH-HHHHHHHHHHHHc-------------------------
Confidence 358999999999996 4455554444322 2446666533 2333333222211
Q ss_pred EEEEchHHHHHHHhcCCCCCcceEEEEechhccchh---hHHHHHHHHHHCccCCCCcEEEecccCC
Q 002552 378 LLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMN---EDFLLIILRDLLPRRPDLRLILMSATIN 441 (908)
Q Consensus 378 Iiv~T~g~Ll~~l~~~~~l~~~~~iIiDEaHeR~~~---~d~ll~~lk~~~~~~~~~qiIlmSAT~~ 441 (908)
.....+.+.+ ..+++||||++|.-.-. .+.+..++..+... ..++|+.|...+
T Consensus 86 ---~~~~~~~~~~------~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~--~k~li~ts~~~P 141 (219)
T PF00308_consen 86 ---GEIEEFKDRL------RSADLLIIDDIQFLAGKQRTQEELFHLFNRLIES--GKQLILTSDRPP 141 (219)
T ss_dssp ---TSHHHHHHHH------CTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHT--TSEEEEEESS-T
T ss_pred ---ccchhhhhhh------hcCCEEEEecchhhcCchHHHHHHHHHHHHHHhh--CCeEEEEeCCCC
Confidence 0122334433 57899999999953222 23344444444333 346666665544
No 322
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.97 E-value=0.29 Score=57.41 Aligned_cols=48 Identities=19% Similarity=0.224 Sum_probs=28.3
Q ss_pred HHHHhcCCCCCcceEEEEechhccchhhHHHHHHHHHHCccCCCCcEEEe
Q 002552 387 LRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILM 436 (908)
Q Consensus 387 l~~l~~~~~l~~~~~iIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiIlm 436 (908)
...+...+.+.+..+|||||+|. +..+.+..+++.+....+...+|+.
T Consensus 105 ~~~~~~~p~~~~~kVVIIDEad~--ls~~a~naLLk~LEep~~~t~~Il~ 152 (504)
T PRK14963 105 REKVLLAPLRGGRKVYILDEAHM--MSKSAFNALLKTLEEPPEHVIFILA 152 (504)
T ss_pred HHHHhhccccCCCeEEEEECccc--cCHHHHHHHHHHHHhCCCCEEEEEE
Confidence 33344445667899999999994 3444455566665443333344443
No 323
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=93.95 E-value=0.089 Score=68.62 Aligned_cols=135 Identities=13% Similarity=0.117 Sum_probs=81.4
Q ss_pred hHHHHHHHHHHHhCCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCCEEe
Q 002552 284 FKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLGETVG 363 (908)
Q Consensus 284 ~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~~~~~~~g~~vg 363 (908)
++-|.++|. ..+++++|.|..|||||+.+..-++..+... ....+|+|+.=|+.+|.++.+|+.+.+...+.....
T Consensus 3 t~~Q~~ai~--~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~--~~~~~il~~tFt~~aa~e~~~ri~~~l~~~~~~~p~ 78 (1232)
T TIGR02785 3 TDEQWQAIY--TRGQNILVSASAGSGKTAVLVERIIKKILRG--VDIDRLLVVTFTNAAAREMKERIEEALQKALQQEPN 78 (1232)
T ss_pred CHHHHHHHh--CCCCCEEEEecCCCcHHHHHHHHHHHHHhcC--CCHhhEEEEeccHHHHHHHHHHHHHHHHHHHhcCch
Confidence 456888876 3688999999999999998888777765432 122469999999999999999998866432211100
Q ss_pred EEeeccccCCCCCcEEEEchHHH-HHHHhcCCCCCcc--eEEEEechhccchhhHHHHHHHHH
Q 002552 364 YQIRLESKRSAQTRLLFCTTGVL-LRQLVEDPDLSCV--SHLLVDEIHERGMNEDFLLIILRD 423 (908)
Q Consensus 364 ~~~~~~~~~~~~~~Iiv~T~g~L-l~~l~~~~~l~~~--~~iIiDEaHeR~~~~d~ll~~lk~ 423 (908)
. .+.......-...-|+|-..+ ++.+......-++ .+=|.||.....+..+.+..++..
T Consensus 79 ~-~~L~~q~~~~~~~~i~Tihsf~~~~~~~~~~~l~ldP~F~i~de~e~~ll~~e~~~~~~e~ 140 (1232)
T TIGR02785 79 S-KHLRRQLALLNTANISTLHSFCLKVIRKHYYLLDLDPSFRILTDTEQLLLIKEVVDDVFEE 140 (1232)
T ss_pred h-HHHHHHHhhccCCeEeeHHHHHHHHHHHhhhhcCCCCCceeCCHHHHHHHHHHHHHHHHHH
Confidence 0 001111111234567786544 4444443322222 445689888544444444444443
No 324
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=93.92 E-value=0.39 Score=52.06 Aligned_cols=21 Identities=29% Similarity=0.428 Sum_probs=17.1
Q ss_pred CCeEEEEecCCCCccchHHHH
Q 002552 297 NQVLVVSGETGCGKTTQLPQF 317 (908)
Q Consensus 297 ~~~vii~a~TGSGKTt~~~~~ 317 (908)
+..+++.||+|||||+.+-.+
T Consensus 58 ~~~vll~G~pGTGKT~lA~~i 78 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVALRM 78 (284)
T ss_pred CceEEEEcCCCCCHHHHHHHH
Confidence 457999999999999866443
No 325
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=93.92 E-value=0.093 Score=63.20 Aligned_cols=118 Identities=16% Similarity=0.119 Sum_probs=70.8
Q ss_pred CchHHHHHHHHHHH-hCCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCC--CC
Q 002552 282 PAFKMKAEFLKAVA-ENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGE--NL 358 (908)
Q Consensus 282 pi~~~Q~~~i~~i~-~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~~~~~--~~ 358 (908)
.+..-|.+++-.++ ...-.+|.|=+|+||||.+...|--.... +.+||.+.-|-.++..+-.++..+.-. .+
T Consensus 669 ~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~LIkiL~~~-----gkkVLLtsyThsAVDNILiKL~~~~i~~lRL 743 (1100)
T KOG1805|consen 669 RLNNDQRQALLKALAAEDYALILGMPGTGKTTTISLLIKILVAL-----GKKVLLTSYTHSAVDNILIKLKGFGIYILRL 743 (1100)
T ss_pred hcCHHHHHHHHHHHhccchheeecCCCCCchhhHHHHHHHHHHc-----CCeEEEEehhhHHHHHHHHHHhccCcceeec
Confidence 34455666666554 55678999999999999887766544332 458999999999988887666543211 11
Q ss_pred CCEEeEE--eeccc--------------cCCCCCcEEEEchHHHHHHHhcCC--CCCcceEEEEechhc
Q 002552 359 GETVGYQ--IRLES--------------KRSAQTRLLFCTTGVLLRQLVEDP--DLSCVSHLLVDEIHE 409 (908)
Q Consensus 359 g~~vg~~--~~~~~--------------~~~~~~~Iiv~T~g~Ll~~l~~~~--~l~~~~~iIiDEaHe 409 (908)
|..--.+ ++... .....+.|+.||-=-+ .+| ....+++.|||||-.
T Consensus 744 G~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi-----~~plf~~R~FD~cIiDEASQ 807 (1100)
T KOG1805|consen 744 GSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGI-----NHPLFVNRQFDYCIIDEASQ 807 (1100)
T ss_pred CCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCC-----CchhhhccccCEEEEccccc
Confidence 2111000 10000 1123466777773111 122 346799999999985
No 326
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=93.89 E-value=0.12 Score=63.82 Aligned_cols=107 Identities=20% Similarity=0.162 Sum_probs=70.4
Q ss_pred chHHHHHHHHHHHhCCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCCEE
Q 002552 283 AFKMKAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLGETV 362 (908)
Q Consensus 283 i~~~Q~~~i~~i~~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~~~~~~~g~~v 362 (908)
+.+-|.+++... ...++|.|..|||||+.+..-+...+... .-.+.+||++.-|+.+|.++.+|+.+..+..
T Consensus 5 Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~~l~~ria~Li~~~-~i~P~~IL~lTFT~kAA~em~~Rl~~~~~~~----- 76 (726)
T TIGR01073 5 LNPEQREAVKTT--EGPLLIMAGAGSGKTRVLTHRIAHLIAEK-NVAPWNILAITFTNKAAREMKERVEKLLGPV----- 76 (726)
T ss_pred cCHHHHHHHhCC--CCCEEEEeCCCCCHHHHHHHHHHHHHHcC-CCCHHHeeeeeccHHHHHHHHHHHHHHhccc-----
Confidence 456788887653 45689999999999988777666544321 1234579999999999999999998764421
Q ss_pred eEEeeccccCCCCCcEEEEchHHHH-HHHhcCC-CC-CcceEEEEechhc
Q 002552 363 GYQIRLESKRSAQTRLLFCTTGVLL-RQLVEDP-DL-SCVSHLLVDEIHE 409 (908)
Q Consensus 363 g~~~~~~~~~~~~~~Iiv~T~g~Ll-~~l~~~~-~l-~~~~~iIiDEaHe 409 (908)
...+.|+|-..|. +.|.... .+ -.-.+-|+|+.+.
T Consensus 77 ------------~~~~~i~TFHs~~~~iLr~~~~~~g~~~~f~i~d~~~~ 114 (726)
T TIGR01073 77 ------------AEDIWISTFHSMCVRILRRDIDRIGINRNFSIIDPTDQ 114 (726)
T ss_pred ------------cCCcEEEcHHHHHHHHHHHHHHHhCCCCCCCcCCHHHH
Confidence 1357788876554 3333211 11 0123457888874
No 327
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=93.88 E-value=0.16 Score=58.66 Aligned_cols=35 Identities=20% Similarity=0.273 Sum_probs=22.4
Q ss_pred CeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEc
Q 002552 298 QVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQ 337 (908)
Q Consensus 298 ~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~ 337 (908)
+.+++.|++|+|||+.+- .+...+... +.+++++.
T Consensus 142 npl~L~G~~G~GKTHLl~-Ai~~~l~~~----~~~v~yi~ 176 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQ-AAVHALRES----GGKILYVR 176 (445)
T ss_pred ceEEEEcCCCCCHHHHHH-HHHHHHHHc----CCCEEEee
Confidence 468999999999996443 344433321 34667654
No 328
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=93.72 E-value=0.34 Score=56.75 Aligned_cols=43 Identities=19% Similarity=0.435 Sum_probs=29.5
Q ss_pred CCCCCcceEEEEechhccchhhHHHHHHHHHHCccCCCCcEEEec
Q 002552 393 DPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILMS 437 (908)
Q Consensus 393 ~~~l~~~~~iIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiIlmS 437 (908)
.|....+.++||||||. +..+..-.++|.+....+...+|+.+
T Consensus 112 ~P~~~~~KVvIIDEad~--Lt~~A~NALLK~LEEpp~~t~FIL~t 154 (535)
T PRK08451 112 KPSMARFKIFIIDEVHM--LTKEAFNALLKTLEEPPSYVKFILAT 154 (535)
T ss_pred CcccCCeEEEEEECccc--CCHHHHHHHHHHHhhcCCceEEEEEE
Confidence 45667899999999995 44555666677666554555666554
No 329
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=93.68 E-value=0.34 Score=55.39 Aligned_cols=134 Identities=12% Similarity=0.099 Sum_probs=75.7
Q ss_pred CeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHH-HHHHHHHHHHHHhCCCCCCEEeEEeecc--cc-CC
Q 002552 298 QVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRI-SAISVAARVSSERGENLGETVGYQIRLE--SK-RS 373 (908)
Q Consensus 298 ~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~-la~qi~~rv~~~~~~~~g~~vg~~~~~~--~~-~~ 373 (908)
+..++.|..|||||..+.+.++..++.. .++.+++|+-|+.- +...+...+...+.. .|...-+..... .. ..
T Consensus 2 ~~~i~~GgrgSGKS~~~~~~~~~~~~~~--~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~-~g~~~~~~~~~~~~~i~~~ 78 (396)
T TIGR01547 2 EEIIAKGGRRSGKTFAIALKLVEKLAIN--KKQQNILAARKVQNSIRDSVFKDIENLLSI-EGINYEFKKSKSSMEIKIL 78 (396)
T ss_pred ceEEEeCCCCcccHHHHHHHHHHHHHhc--CCCcEEEEEehhhhHHHHHHHHHHHHHHHH-cCChhheeecCCccEEEec
Confidence 4578999999999988887777766653 13578999988876 666677776544321 222111211111 00 11
Q ss_pred C-CCcEEEEch-HHHHHHHhcCCCCCcceEEEEechhccchhhHHHHHHHHHHCccCCCCcEEEecccCC
Q 002552 374 A-QTRLLFCTT-GVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILMSATIN 441 (908)
Q Consensus 374 ~-~~~Iiv~T~-g~Ll~~l~~~~~l~~~~~iIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiIlmSAT~~ 441 (908)
. +..|+|..- ..-.+ +. ....+..+.+|||.+. ..+.+..++..+.. ......|++|.|++
T Consensus 79 ~~g~~i~f~g~~d~~~~-ik---~~~~~~~~~idEa~~~--~~~~~~~l~~rlr~-~~~~~~i~~t~NP~ 141 (396)
T TIGR01547 79 NTGKKFIFKGLNDKPNK-LK---SGAGIAIIWFEEASQL--TFEDIKELIPRLRE-TGGKKFIIFSSNPE 141 (396)
T ss_pred CCCeEEEeecccCChhH-hh---Ccceeeeehhhhhhhc--CHHHHHHHHHHhhc-cCCccEEEEEcCcC
Confidence 1 445555432 11111 11 2345799999999974 34455555555322 11222477888874
No 330
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=93.65 E-value=0.11 Score=56.17 Aligned_cols=54 Identities=26% Similarity=0.311 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHh-CCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHH
Q 002552 285 KMKAEFLKAVAE-NQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAI 344 (908)
Q Consensus 285 ~~Q~~~i~~i~~-~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~ 344 (908)
+-+.+++..+-. ..+++|+|.|||||||.+--++.. ....-+||++.-|.||..
T Consensus 160 ~~~a~~L~~av~~r~NILisGGTGSGKTTlLNal~~~------i~~~eRvItiEDtaELql 214 (355)
T COG4962 160 RRAAKFLRRAVGIRCNILISGGTGSGKTTLLNALSGF------IDSDERVITIEDTAELQL 214 (355)
T ss_pred HHHHHHHHHHHhhceeEEEeCCCCCCHHHHHHHHHhc------CCCcccEEEEeehhhhcc
Confidence 455556655544 459999999999999854332221 122348999999887743
No 331
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.64 E-value=0.55 Score=54.81 Aligned_cols=49 Identities=20% Similarity=0.262 Sum_probs=29.9
Q ss_pred HHHHHHhcCCCCCcceEEEEechhccchhhHHHHHHHHHHCccCCCCcEEE
Q 002552 385 VLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLIL 435 (908)
Q Consensus 385 ~Ll~~l~~~~~l~~~~~iIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiIl 435 (908)
.+.+.+...|...++.++||||||. +..+....+++.+....+...+|+
T Consensus 106 ~I~~~~~~~P~~~~~KVvIIDEad~--Lt~~a~naLLk~LEepp~~~v~Il 154 (486)
T PRK14953 106 ALRDAVSYTPIKGKYKVYIIDEAHM--LTKEAFNALLKTLEEPPPRTIFIL 154 (486)
T ss_pred HHHHHHHhCcccCCeeEEEEEChhh--cCHHHHHHHHHHHhcCCCCeEEEE
Confidence 3455555566778899999999994 334444555666544433444444
No 332
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=93.56 E-value=0.19 Score=55.22 Aligned_cols=53 Identities=11% Similarity=0.184 Sum_probs=35.6
Q ss_pred HHHHHHhcCCCCCcceEEEEechhccchhhHHHHHHHHHHCccCCCCcEEEeccc
Q 002552 385 VLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILMSAT 439 (908)
Q Consensus 385 ~Ll~~l~~~~~l~~~~~iIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiIlmSAT 439 (908)
.+.+.+...+.-..++++|||+||. +...-.-.+||.+..-.++.-+|+.|..
T Consensus 94 ~l~~~~~~~~~~g~~KV~iI~~a~~--m~~~AaNaLLKtLEEPp~~~~fiL~t~~ 146 (325)
T PRK06871 94 EINEKVSQHAQQGGNKVVYIQGAER--LTEAAANALLKTLEEPRPNTYFLLQADL 146 (325)
T ss_pred HHHHHHhhccccCCceEEEEechhh--hCHHHHHHHHHHhcCCCCCeEEEEEECC
Confidence 4455555566677899999999995 4455667778877665555555554443
No 333
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=93.47 E-value=0.11 Score=57.15 Aligned_cols=54 Identities=24% Similarity=0.305 Sum_probs=36.1
Q ss_pred HHHHHHH-HHHhCCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHH
Q 002552 286 MKAEFLK-AVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRIS 342 (908)
Q Consensus 286 ~Q~~~i~-~i~~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~l 342 (908)
.|.+.+. ++..+++++|+|+|||||||.+-. ++..... ..+..+++++..+.++
T Consensus 136 ~~~~~L~~~v~~~~~ilI~G~tGSGKTTll~a-L~~~~~~--~~~~~rivtIEd~~El 190 (319)
T PRK13894 136 AQREAIIAAVRAHRNILVIGGTGSGKTTLVNA-IINEMVI--QDPTERVFIIEDTGEI 190 (319)
T ss_pred HHHHHHHHHHHcCCeEEEECCCCCCHHHHHHH-HHHhhhh--cCCCceEEEEcCCCcc
Confidence 3444454 567889999999999999975543 3333221 1234578888888776
No 334
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=93.45 E-value=0.64 Score=53.59 Aligned_cols=151 Identities=15% Similarity=0.116 Sum_probs=89.6
Q ss_pred CCCchHHHHHHHHHHHh----------CCeEEEEecCCCCccchHHHHHHHH-HHhccCCCCcEEEEEcccHHHHHHHHH
Q 002552 280 KLPAFKMKAEFLKAVAE----------NQVLVVSGETGCGKTTQLPQFILEE-ELSSLRGADCNIICTQPRRISAISVAA 348 (908)
Q Consensus 280 ~lpi~~~Q~~~i~~i~~----------~~~vii~a~TGSGKTt~~~~~il~~-~~~~~~~~~~~ilv~~P~r~la~qi~~ 348 (908)
.+++.|+|.-++-+|.. -+..+|.-|-+-||||.+.-+++.. +... ..+..+.+++|+.+-|.+.+.
T Consensus 59 p~~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~--~~~~~~~i~A~s~~qa~~~F~ 136 (546)
T COG4626 59 PESLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNW--RSGAGIYILAPSVEQAANSFN 136 (546)
T ss_pred ccccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhh--hcCCcEEEEeccHHHHHHhhH
Confidence 45677899999999872 2467889999999998776444333 3332 235578999999999999887
Q ss_pred HHHHHhCCCCCCEEeEEeeccccCCCCC-cEEEEchHHHHHHHhcCC---CCCcceEEEEechhccchhhHHHHHHHHHH
Q 002552 349 RVSSERGENLGETVGYQIRLESKRSAQT-RLLFCTTGVLLRQLVEDP---DLSCVSHLLVDEIHERGMNEDFLLIILRDL 424 (908)
Q Consensus 349 rv~~~~~~~~g~~vg~~~~~~~~~~~~~-~Iiv~T~g~Ll~~l~~~~---~l~~~~~iIiDEaHeR~~~~d~ll~~lk~~ 424 (908)
.++....... ..+......... .|++.-....++.+..++ .=.+..+.|+||.|+-+-..+++- .++.=
T Consensus 137 ~ar~mv~~~~------~l~~~~~~q~~s~~i~~~~~~s~ik~~aa~~~~~Dg~~~~~~I~DEih~f~~~~~~~~-~~~~g 209 (546)
T COG4626 137 PARDMVKRDD------DLRDLCNVQTHSRTITHRKTDSTIKAVAADPNTVDGLNSVGAIIDELHLFGKQEDMYS-EAKGG 209 (546)
T ss_pred HHHHHHHhCc------chhhhhccccceeEEEecccceeeeeeccCCCcccCCCcceEEEehhhhhcCHHHHHH-HHHhh
Confidence 7665433221 111111111111 122222223344444444 335688999999997432223333 33334
Q ss_pred CccCCCCcEEEeccc
Q 002552 425 LPRRPDLRLILMSAT 439 (908)
Q Consensus 425 ~~~~~~~qiIlmSAT 439 (908)
+..+|+.+++..|-.
T Consensus 210 ~~ar~~~l~~~ITT~ 224 (546)
T COG4626 210 LGARPEGLVVYITTS 224 (546)
T ss_pred hccCcCceEEEEecC
Confidence 456778888887763
No 335
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=93.42 E-value=0.36 Score=53.28 Aligned_cols=19 Identities=37% Similarity=0.452 Sum_probs=14.3
Q ss_pred eEEEEecCCCCccchHHHH
Q 002552 299 VLVVSGETGCGKTTQLPQF 317 (908)
Q Consensus 299 ~vii~a~TGSGKTt~~~~~ 317 (908)
.+++.||+|+|||+.+-.+
T Consensus 45 ~lll~G~~G~GKT~la~~l 63 (316)
T PHA02544 45 MLLHSPSPGTGKTTVAKAL 63 (316)
T ss_pred EEEeeCcCCCCHHHHHHHH
Confidence 4555999999999765444
No 336
>PLN03025 replication factor C subunit; Provisional
Probab=93.29 E-value=0.45 Score=52.65 Aligned_cols=23 Identities=39% Similarity=0.569 Sum_probs=17.9
Q ss_pred CeEEEEecCCCCccchHHHHHHH
Q 002552 298 QVLVVSGETGCGKTTQLPQFILE 320 (908)
Q Consensus 298 ~~vii~a~TGSGKTt~~~~~il~ 320 (908)
.+++++||+|+|||+.+-.+..+
T Consensus 35 ~~lll~Gp~G~GKTtla~~la~~ 57 (319)
T PLN03025 35 PNLILSGPPGTGKTTSILALAHE 57 (319)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999866554433
No 337
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=93.21 E-value=0.11 Score=52.42 Aligned_cols=47 Identities=26% Similarity=0.244 Sum_probs=30.5
Q ss_pred eEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHH
Q 002552 299 VLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVS 351 (908)
Q Consensus 299 ~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~ 351 (908)
.++|.|++|+|||+...+++.+.+. .+ .+++++. +.+.+.++.+++.
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~---~g--~~v~~~s-~e~~~~~~~~~~~ 47 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLA---RG--EPGLYVT-LEESPEELIENAE 47 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHH---CC--CcEEEEE-CCCCHHHHHHHHH
Confidence 3789999999999988888887652 22 2344432 3344555555543
No 338
>CHL00181 cbbX CbbX; Provisional
Probab=93.20 E-value=0.6 Score=50.69 Aligned_cols=23 Identities=26% Similarity=0.310 Sum_probs=18.2
Q ss_pred CCeEEEEecCCCCccchHHHHHH
Q 002552 297 NQVLVVSGETGCGKTTQLPQFIL 319 (908)
Q Consensus 297 ~~~vii~a~TGSGKTt~~~~~il 319 (908)
+-++++.||+|+|||+.+-.+..
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la~ 81 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMAD 81 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999987665543
No 339
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.20 E-value=0.33 Score=58.28 Aligned_cols=48 Identities=21% Similarity=0.353 Sum_probs=28.4
Q ss_pred HHHHhcCCCCCcceEEEEechhccchhhHHHHHHHHHHCccCCCCcEEEe
Q 002552 387 LRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILM 436 (908)
Q Consensus 387 l~~l~~~~~l~~~~~iIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiIlm 436 (908)
...+...+.+.+..+|||||+|. +..+-...+++.+....+...+|+.
T Consensus 109 i~~~~~~p~~~~~kVvIIDEa~~--L~~~a~naLLk~LEepp~~tv~Il~ 156 (585)
T PRK14950 109 IERVQFRPALARYKVYIIDEVHM--LSTAAFNALLKTLEEPPPHAIFILA 156 (585)
T ss_pred HHHHhhCcccCCeEEEEEeChHh--CCHHHHHHHHHHHhcCCCCeEEEEE
Confidence 34444455678899999999994 3344455556655443333333333
No 340
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=93.16 E-value=0.23 Score=59.88 Aligned_cols=50 Identities=20% Similarity=0.299 Sum_probs=30.7
Q ss_pred HHHHHHhcCCCCCcceEEEEechhccchhhHHHHHHHHHHCccCCCCcEEEe
Q 002552 385 VLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILM 436 (908)
Q Consensus 385 ~Ll~~l~~~~~l~~~~~iIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiIlm 436 (908)
.|...+...|....+.++||||||. +..+..-.+++.+....+...+|++
T Consensus 105 eLie~~~~~P~~g~~KV~IIDEa~~--LT~~A~NALLKtLEEPP~~tifILa 154 (725)
T PRK07133 105 ELIENVKNLPTQSKYKIYIIDEVHM--LSKSAFNALLKTLEEPPKHVIFILA 154 (725)
T ss_pred HHHHHHHhchhcCCCEEEEEEChhh--CCHHHHHHHHHHhhcCCCceEEEEE
Confidence 4555555566778999999999994 3344455566665443333434443
No 341
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=93.12 E-value=0.12 Score=57.30 Aligned_cols=48 Identities=29% Similarity=0.280 Sum_probs=33.1
Q ss_pred HHHHHHhCCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHH
Q 002552 290 FLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISA 343 (908)
Q Consensus 290 ~i~~i~~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la 343 (908)
+..++..+.+++|+|+|||||||.+-. ++..+ ....+|+++.-+.|+.
T Consensus 153 L~~~v~~~~nili~G~tgSGKTTll~a-L~~~i-----p~~~ri~tiEd~~El~ 200 (332)
T PRK13900 153 LEHAVISKKNIIISGGTSTGKTTFTNA-ALREI-----PAIERLITVEDAREIV 200 (332)
T ss_pred HHHHHHcCCcEEEECCCCCCHHHHHHH-HHhhC-----CCCCeEEEecCCCccc
Confidence 334566788999999999999986633 34332 2245788877776654
No 342
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=93.05 E-value=0.091 Score=56.63 Aligned_cols=45 Identities=36% Similarity=0.401 Sum_probs=31.3
Q ss_pred HHHhCCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHH
Q 002552 293 AVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRIS 342 (908)
Q Consensus 293 ~i~~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~l 342 (908)
.+..+.+++|+|+|||||||.+-.+ ++.+-.. ..+|++++...|+
T Consensus 123 ~v~~~~~ili~G~tGSGKTT~l~al-l~~i~~~----~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 123 AVRGRGNILISGPTGSGKTTLLNAL-LEEIPPE----DERIVTIEDPPEL 167 (270)
T ss_dssp CHHTTEEEEEEESTTSSHHHHHHHH-HHHCHTT----TSEEEEEESSS-S
T ss_pred ccccceEEEEECCCccccchHHHHH-hhhcccc----ccceEEeccccce
Confidence 4567889999999999999977544 4433221 3578888876554
No 343
>KOG2373 consensus Predicted mitochondrial DNA helicase twinkle [Replication, recombination and repair]
Probab=93.01 E-value=0.037 Score=59.00 Aligned_cols=34 Identities=35% Similarity=0.536 Sum_probs=26.6
Q ss_pred HHHHHHhCCeEEEEecCCCCccchHHHHHHHHHH
Q 002552 290 FLKAVAENQVLVVSGETGCGKTTQLPQFILEEEL 323 (908)
Q Consensus 290 ~i~~i~~~~~vii~a~TGSGKTt~~~~~il~~~~ 323 (908)
++.-...|.-++++|||||||||-+.-|.++...
T Consensus 266 ~LkGhR~GElTvlTGpTGsGKTTFlsEYsLDL~~ 299 (514)
T KOG2373|consen 266 YLKGHRPGELTVLTGPTGSGKTTFLSEYSLDLFT 299 (514)
T ss_pred HhccCCCCceEEEecCCCCCceeEehHhhHHHHh
Confidence 4444445678999999999999988888887653
No 344
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=92.95 E-value=0.81 Score=50.42 Aligned_cols=19 Identities=37% Similarity=0.531 Sum_probs=15.8
Q ss_pred eEEEEecCCCCccchHHHH
Q 002552 299 VLVVSGETGCGKTTQLPQF 317 (908)
Q Consensus 299 ~vii~a~TGSGKTt~~~~~ 317 (908)
.+++.||+|+|||+.+-.+
T Consensus 40 ~~ll~G~~G~GKt~~~~~l 58 (319)
T PRK00440 40 HLLFAGPPGTGKTTAALAL 58 (319)
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 5899999999999766544
No 345
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=92.95 E-value=0.59 Score=54.52 Aligned_cols=114 Identities=17% Similarity=0.183 Sum_probs=91.0
Q ss_pred cCCCcEEEecCCHHHHHHHHHHHHhcccCCCCCceEEEeccCCCChHhHHhhhCCCCCC-CcEEEEeccccccccCCCCe
Q 002552 552 EGDGAILVFLTGWNDISKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPN-KRKIVLATNIAESSITIDDV 630 (908)
Q Consensus 552 ~~~g~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lH~~l~~~er~~v~~~f~~g-~~kIlvaT~iae~GidIp~v 630 (908)
..+.++|+|..--+.++-+.++|.. .+|..+-|.|+....+|..+...|... ..-.|++|-...-||++-+.
T Consensus 1042 aegHRvL~yfQMTkM~dl~EdYl~y-------r~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGGLGINLTAA 1114 (1185)
T KOG0388|consen 1042 AEGHRVLMYFQMTKMIDLIEDYLVY-------RGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGGLGINLTAA 1114 (1185)
T ss_pred cCCceEEehhHHHHHHHHHHHHHHh-------hccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCccccccccc
Confidence 3567899999988888888888876 567788899999999999999988764 44678999999999999999
Q ss_pred EEEEeCCCccceeeccccCccccccccccHhhHHHhccccCCCCCcEEEEecChhhH
Q 002552 631 VYVVDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRVQPGVCYKLYPRIIH 687 (908)
Q Consensus 631 ~~VId~g~~k~~~yd~~~~~~~l~~~~iS~~~~~QR~GRaGR~~~G~~~~l~~~~~~ 687 (908)
+.||.|+--- +|.. -.++.-|+-|-|.++.=.+|+|.++..-
T Consensus 1115 DTViFYdSDW----NPT~-----------D~QAMDRAHRLGQTrdvtvyrl~~rgTv 1156 (1185)
T KOG0388|consen 1115 DTVIFYDSDW----NPTA-----------DQQAMDRAHRLGQTRDVTVYRLITRGTV 1156 (1185)
T ss_pred ceEEEecCCC----Ccch-----------hhHHHHHHHhccCccceeeeeecccccH
Confidence 9999865433 3322 1256677778888888899999998644
No 346
>PRK13342 recombination factor protein RarA; Reviewed
Probab=92.95 E-value=0.48 Score=54.44 Aligned_cols=19 Identities=32% Similarity=0.455 Sum_probs=16.0
Q ss_pred eEEEEecCCCCccchHHHH
Q 002552 299 VLVVSGETGCGKTTQLPQF 317 (908)
Q Consensus 299 ~vii~a~TGSGKTt~~~~~ 317 (908)
.+++.||+|+||||.+-.+
T Consensus 38 ~ilL~GppGtGKTtLA~~i 56 (413)
T PRK13342 38 SMILWGPPGTGKTTLARII 56 (413)
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 7899999999999866544
No 347
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=92.94 E-value=0.19 Score=51.63 Aligned_cols=20 Identities=30% Similarity=0.388 Sum_probs=15.8
Q ss_pred CeEEEEecCCCCccchHHHH
Q 002552 298 QVLVVSGETGCGKTTQLPQF 317 (908)
Q Consensus 298 ~~vii~a~TGSGKTt~~~~~ 317 (908)
..+|+.||+|+||||.+-..
T Consensus 51 ~h~lf~GPPG~GKTTLA~II 70 (233)
T PF05496_consen 51 DHMLFYGPPGLGKTTLARII 70 (233)
T ss_dssp -EEEEESSTTSSHHHHHHHH
T ss_pred ceEEEECCCccchhHHHHHH
Confidence 37999999999999855443
No 348
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.91 E-value=0.51 Score=56.80 Aligned_cols=48 Identities=19% Similarity=0.274 Sum_probs=28.4
Q ss_pred HHHHHhcCCCCCcceEEEEechhccchhhHHHHHHHHHHCccCCCCcEEE
Q 002552 386 LLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLIL 435 (908)
Q Consensus 386 Ll~~l~~~~~l~~~~~iIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiIl 435 (908)
++..+...+....+.+|||||||. +..+-.-.++|.+..-.....+|+
T Consensus 109 ii~~a~~~p~~~~~KViIIDEad~--Lt~~a~naLLK~LEePp~~tvfIL 156 (620)
T PRK14948 109 LIERAQFAPVQARWKVYVIDECHM--LSTAAFNALLKTLEEPPPRVVFVL 156 (620)
T ss_pred HHHHHhhChhcCCceEEEEECccc--cCHHHHHHHHHHHhcCCcCeEEEE
Confidence 444444445567889999999995 344445556666654333333333
No 349
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=92.83 E-value=0.2 Score=55.59 Aligned_cols=59 Identities=12% Similarity=0.093 Sum_probs=37.7
Q ss_pred EEEEchHHHHHHHhcCCCCCcceEEEEechhccchhhHHHHHHHHHHCccCCCCcEEEecc
Q 002552 378 LLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILMSA 438 (908)
Q Consensus 378 Iiv~T~g~Ll~~l~~~~~l~~~~~iIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiIlmSA 438 (908)
|.|-.--.+.+.+...+....++++|||+||. ++..---.+||.+..-.++.-+|+.|.
T Consensus 88 I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~--m~~~AaNaLLKtLEEPp~~t~fiL~t~ 146 (334)
T PRK07993 88 LGVDAVREVTEKLYEHARLGGAKVVWLPDAAL--LTDAAANALLKTLEEPPENTWFFLACR 146 (334)
T ss_pred CCHHHHHHHHHHHhhccccCCceEEEEcchHh--hCHHHHHHHHHHhcCCCCCeEEEEEEC
Confidence 33333334556666666778999999999995 455556677777766444444444443
No 350
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=92.83 E-value=0.53 Score=56.52 Aligned_cols=160 Identities=20% Similarity=0.195 Sum_probs=90.2
Q ss_pred HHHHHHHHHHhccCCCcEEEecCCHHHHHHHHHHHHhcccCC---CCCceEEEeccCCCChH----hHHhhhCCCCCCCc
Q 002552 540 LVESTIEYICRHEGDGAILVFLTGWNDISKLLDQIKVNKFLG---DPNKFLVLPLHGSMPTI----NQREIFDRPPPNKR 612 (908)
Q Consensus 540 li~~~l~~i~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~~---~~~~~~v~~lH~~l~~~----er~~v~~~f~~g~~ 612 (908)
.+.+.|...++.-+.| +|||+|+..-.+++........+.. ...++.+-|=-...-.+ --+.+..+-..|..
T Consensus 548 ~lg~~i~~v~rvVp~G-~L~FfPSY~vmdk~~tfw~~~~~we~~~~vk~l~vEPr~k~~f~e~m~~y~~~i~~pes~ga~ 626 (945)
T KOG1132|consen 548 ELGEAILNVARVVPYG-LLIFFPSYPVMDKLITFWQNRGLWERMEKVKKLVVEPRSKSEFTEVMSRYYNAIADPESSGAV 626 (945)
T ss_pred HHHHHHHHHHhhcccc-eEEeccchHHHHHHHHHHHcchHHHHhhcccCceeccCCccchHHHHHHHHHHhhCccccceE
Confidence 3555666666655666 9999999988888866554322111 01122222221111111 11223333334566
Q ss_pred EEEEeccccccccCCCC--eEEEEeCCCccceeeccccC---------c------ccc--ccccccHhhH---HHhcccc
Q 002552 613 KIVLATNIAESSITIDD--VVYVVDCGKAKETSYDALNK---------L------ACL--LPSWISKASA---HQRRGRA 670 (908)
Q Consensus 613 kIlvaT~iae~GidIp~--v~~VId~g~~k~~~yd~~~~---------~------~~l--~~~~iS~~~~---~QR~GRa 670 (908)
-..||=--+++|+|+.| -+.||-.|+|--...|+.-. . +++ ...|-+...| -|-+||+
T Consensus 627 ~~aVcRGKVSEGlDFsD~~~RaVI~tGlPyP~~~D~~V~lK~~y~D~~~~~~g~~s~~lsg~eWY~~qA~RAvNQAiGRv 706 (945)
T KOG1132|consen 627 FFAVCRGKVSEGLDFSDDNGRAVIITGLPYPPVMDPRVKLKKQYLDENSSLKGAKSQLLSGQEWYSQQAYRAVNQAIGRV 706 (945)
T ss_pred EEEEecccccCCCCccccCCceeEEecCCCCCCCCHHHHHHHHhhhhhccccccccccccchHHHHhhHHHHHHHHHHHH
Confidence 67777778899999976 68899999997666655211 0 112 3356655544 4788999
Q ss_pred CCCCC--cEEEEecChhhHhhcCCCCCCccccC
Q 002552 671 GRVQP--GVCYKLYPRIIHDAMLPYQLPEILRT 701 (908)
Q Consensus 671 GR~~~--G~~~~l~~~~~~~~l~~~~~pei~r~ 701 (908)
-|.+. |..+ |++....+.-.....|+..|.
T Consensus 707 iRHR~D~Gav~-l~D~Rfe~~~~~~~lskw~r~ 738 (945)
T KOG1132|consen 707 IRHRNDYGAVI-LCDDRFENADARSQLSKWIRS 738 (945)
T ss_pred Hhhhcccceee-EeechhhcCccccccchhhhc
Confidence 99844 6555 555443333334446655554
No 351
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=92.76 E-value=0.3 Score=57.77 Aligned_cols=45 Identities=20% Similarity=0.109 Sum_probs=24.5
Q ss_pred CeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHH
Q 002552 298 QVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISV 346 (908)
Q Consensus 298 ~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi 346 (908)
+.++|.|++|+|||..+- .|...+... ..+.+|+++ +..+++.+.
T Consensus 315 NpL~LyG~sGsGKTHLL~-AIa~~a~~~--~~g~~V~Yi-taeef~~el 359 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLH-AIGHYARRL--YPGTRVRYV-SSEEFTNEF 359 (617)
T ss_pred CcEEEECCCCCCHHHHHH-HHHHHHHHh--CCCCeEEEe-eHHHHHHHH
Confidence 358999999999995333 233333221 123456664 334444333
No 352
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=92.75 E-value=0.25 Score=55.31 Aligned_cols=28 Identities=21% Similarity=0.272 Sum_probs=20.9
Q ss_pred HHhCCeEEEEecCCCCccchHHHHHHHHH
Q 002552 294 VAENQVLVVSGETGCGKTTQLPQFILEEE 322 (908)
Q Consensus 294 i~~~~~vii~a~TGSGKTt~~~~~il~~~ 322 (908)
+-.|+.++|+||+|+||||.+-. |...+
T Consensus 165 ig~Gq~~~IvG~~g~GKTtL~~~-i~~~I 192 (415)
T TIGR00767 165 IGKGQRGLIVAPPKAGKTVLLQK-IAQAI 192 (415)
T ss_pred eCCCCEEEEECCCCCChhHHHHH-HHHhh
Confidence 44789999999999999985433 44443
No 353
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=92.65 E-value=0.75 Score=50.58 Aligned_cols=58 Identities=19% Similarity=0.194 Sum_probs=37.7
Q ss_pred EEEEchHHHHHHHhcCCCCCcceEEEEechhccchhhHHHHHHHHHHCccCCCCcEEEecc
Q 002552 378 LLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILMSA 438 (908)
Q Consensus 378 Iiv~T~g~Ll~~l~~~~~l~~~~~iIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiIlmSA 438 (908)
|-|-..-.+.+.+...+....++++|||+||. ++..-.-.++|.+.. .|+..+|+.+.
T Consensus 104 I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~--m~~~aaNaLLK~LEE-Pp~~~fILi~~ 161 (314)
T PRK07399 104 IRLEQIREIKRFLSRPPLEAPRKVVVIEDAET--MNEAAANALLKTLEE-PGNGTLILIAP 161 (314)
T ss_pred CcHHHHHHHHHHHccCcccCCceEEEEEchhh--cCHHHHHHHHHHHhC-CCCCeEEEEEC
Confidence 43444445677777777778999999999995 344455566666644 44555555544
No 354
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=92.64 E-value=0.49 Score=53.10 Aligned_cols=49 Identities=18% Similarity=0.299 Sum_probs=29.5
Q ss_pred HHHHHHhcCCCCCcceEEEEechhccchhhHHHHHHHHHHCccCCCCcEEE
Q 002552 385 VLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLIL 435 (908)
Q Consensus 385 ~Ll~~l~~~~~l~~~~~iIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiIl 435 (908)
.+.+.+...+...+..+|||||+|. +..+....+++.+....++..+|+
T Consensus 104 ~l~~~~~~~p~~~~~~vviidea~~--l~~~~~~~Ll~~le~~~~~~~lIl 152 (355)
T TIGR02397 104 EILDNVKYAPSSGKYKVYIIDEVHM--LSKSAFNALLKTLEEPPEHVVFIL 152 (355)
T ss_pred HHHHHHhcCcccCCceEEEEeChhh--cCHHHHHHHHHHHhCCccceeEEE
Confidence 3555555566778889999999995 333444455666533333333444
No 355
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=92.60 E-value=0.46 Score=58.28 Aligned_cols=121 Identities=13% Similarity=0.044 Sum_probs=69.3
Q ss_pred hHHHHHHHHHH----HhCCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCC
Q 002552 284 FKMKAEFLKAV----AENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLG 359 (908)
Q Consensus 284 ~~~Q~~~i~~i----~~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~~~~~~~g 359 (908)
..||...+.-+ .++-|-|+.-+-|-|||.|..-++...+...++- +.-||++||-.+.. +--+++.. .-.+.
T Consensus 617 ReYQkiGLdWLatLYeknlNGILADEmGLGKTIQtISllAhLACeegnW--GPHLIVVpTsviLn-WEMElKRw-cPglK 692 (1958)
T KOG0391|consen 617 REYQKIGLDWLATLYEKNLNGILADEMGLGKTIQTISLLAHLACEEGNW--GPHLIVVPTSVILN-WEMELKRW-CPGLK 692 (1958)
T ss_pred HHHHHhhHHHHHHHHHhcccceehhhhcccchhHHHHHHHHHHhcccCC--CCceEEeechhhhh-hhHHHhhh-CCcce
Confidence 35777666553 4566889999999999988877766655443222 22355558866432 22223221 11111
Q ss_pred CEEeEEe-------eccccCCCCCcEEEEchHHHHHHHhcCCCCCcceEEEEechhc
Q 002552 360 ETVGYQI-------RLESKRSAQTRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHE 409 (908)
Q Consensus 360 ~~vg~~~-------~~~~~~~~~~~Iiv~T~g~Ll~~l~~~~~l~~~~~iIiDEaHe 409 (908)
...-|.. |.........||.|+.+..+++-+.. ..-.+..|+||||||.
T Consensus 693 ILTYyGs~kErkeKRqgW~kPnaFHVCItSYklv~qd~~A-FkrkrWqyLvLDEaqn 748 (1958)
T KOG0391|consen 693 ILTYYGSHKERKEKRQGWAKPNAFHVCITSYKLVFQDLTA-FKRKRWQYLVLDEAQN 748 (1958)
T ss_pred EeeecCCHHHHHHHhhcccCCCeeEEeehhhHHHHhHHHH-HHhhccceeehhhhhh
Confidence 1112221 22222233568888888777665432 1235788999999994
No 356
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=92.53 E-value=0.61 Score=58.39 Aligned_cols=61 Identities=21% Similarity=0.285 Sum_probs=34.8
Q ss_pred hHHHHHHHhcCCCCCcceEEEEechhccchhhHHHHHHHHHHCccC----C------CCcEEEecccCChHHHHhhh
Q 002552 383 TGVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRR----P------DLRLILMSATINADLFSKYF 449 (908)
Q Consensus 383 ~g~Ll~~l~~~~~l~~~~~iIiDEaHeR~~~~d~ll~~lk~~~~~~----~------~~qiIlmSAT~~~~~~~~~f 449 (908)
.|.|...+.. ..+++|+|||++. .+.++...++..+-.-+ . .-.+|+|+..+..+.+.+.+
T Consensus 657 ~g~L~~~v~~----~p~svvllDEiek--a~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TSNlg~~~~~~~~ 727 (852)
T TIGR03345 657 GGVLTEAVRR----KPYSVVLLDEVEK--AHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLTSNAGSDLIMALC 727 (852)
T ss_pred cchHHHHHHh----CCCcEEEEechhh--cCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEeCCCchHHHHHhc
Confidence 3556666655 4578999999985 33343333332221110 0 23578888888777665544
No 357
>PHA00729 NTP-binding motif containing protein
Probab=92.50 E-value=0.32 Score=50.26 Aligned_cols=20 Identities=35% Similarity=0.441 Sum_probs=16.4
Q ss_pred eEEEEecCCCCccchHHHHH
Q 002552 299 VLVVSGETGCGKTTQLPQFI 318 (908)
Q Consensus 299 ~vii~a~TGSGKTt~~~~~i 318 (908)
+++|.|++|+|||+.+....
T Consensus 19 nIlItG~pGvGKT~LA~aLa 38 (226)
T PHA00729 19 SAVIFGKQGSGKTTYALKVA 38 (226)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 79999999999997655443
No 358
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=92.41 E-value=0.28 Score=49.15 Aligned_cols=23 Identities=26% Similarity=0.518 Sum_probs=18.9
Q ss_pred HHhCCeEEEEecCCCCccchHHH
Q 002552 294 VAENQVLVVSGETGCGKTTQLPQ 316 (908)
Q Consensus 294 i~~~~~vii~a~TGSGKTt~~~~ 316 (908)
+..|+.+.+.|+.||||||.+-.
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~~ 47 (178)
T cd03247 25 LKQGEKIALLGRSGSGKSTLLQL 47 (178)
T ss_pred EcCCCEEEEECCCCCCHHHHHHH
Confidence 34789999999999999975543
No 359
>PRK04195 replication factor C large subunit; Provisional
Probab=92.37 E-value=0.66 Score=54.45 Aligned_cols=23 Identities=26% Similarity=0.418 Sum_probs=18.4
Q ss_pred CCeEEEEecCCCCccchHHHHHH
Q 002552 297 NQVLVVSGETGCGKTTQLPQFIL 319 (908)
Q Consensus 297 ~~~vii~a~TGSGKTt~~~~~il 319 (908)
.+.+++.||+|+|||+.+-.++-
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~ 61 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALAN 61 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999986655433
No 360
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=92.35 E-value=0.31 Score=54.12 Aligned_cols=50 Identities=14% Similarity=0.107 Sum_probs=31.5
Q ss_pred HHHHHhcCCCCCcceEEEEechhccchhhHHHHHHHHHHCccCCCCcEEEec
Q 002552 386 LLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILMS 437 (908)
Q Consensus 386 Ll~~l~~~~~l~~~~~iIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiIlmS 437 (908)
+...+...+.....+++||||+|. +..+-.-.++|.+....+...+|+.+
T Consensus 98 l~~~~~~~~~~~~~kvviI~~a~~--~~~~a~NaLLK~LEEPp~~~~~Il~t 147 (329)
T PRK08058 98 LKEEFSKSGVESNKKVYIIEHADK--MTASAANSLLKFLEEPSGGTTAILLT 147 (329)
T ss_pred HHHHHhhCCcccCceEEEeehHhh--hCHHHHHHHHHHhcCCCCCceEEEEe
Confidence 444444455667899999999995 34445556666665544455555543
No 361
>PRK06620 hypothetical protein; Validated
Probab=92.32 E-value=0.19 Score=51.97 Aligned_cols=17 Identities=29% Similarity=0.433 Sum_probs=14.4
Q ss_pred CeEEEEecCCCCccchH
Q 002552 298 QVLVVSGETGCGKTTQL 314 (908)
Q Consensus 298 ~~vii~a~TGSGKTt~~ 314 (908)
+.+++.||+|||||+.+
T Consensus 45 ~~l~l~Gp~G~GKThLl 61 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLT 61 (214)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 56899999999999643
No 362
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=92.29 E-value=0.69 Score=46.21 Aligned_cols=124 Identities=17% Similarity=0.223 Sum_probs=68.5
Q ss_pred CCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCCEEeEEeeccccCCCCC
Q 002552 297 NQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLGETVGYQIRLESKRSAQT 376 (908)
Q Consensus 297 ~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~~~~~~~g~~vg~~~~~~~~~~~~~ 376 (908)
++-.+++||-.||||+-+++-+...... +.++++..|.-. .|. +. ..|....... ..
T Consensus 4 g~l~~i~gpM~SGKT~eLl~r~~~~~~~-----g~~v~vfkp~iD------~R~----~~---~~V~Sr~G~~-----~~ 60 (201)
T COG1435 4 GWLEFIYGPMFSGKTEELLRRARRYKEA-----GMKVLVFKPAID------TRY----GV---GKVSSRIGLS-----SE 60 (201)
T ss_pred EEEEEEEccCcCcchHHHHHHHHHHHHc-----CCeEEEEecccc------ccc----cc---ceeeeccCCc-----cc
Confidence 4567899999999999777766554332 346777666311 111 11 1122111111 22
Q ss_pred cEEEEchHHHHHHHhcCCCCCcceEEEEechhccchhhHHHHHHHHHHCccCCCCcEEEecccCChHHHHhhh
Q 002552 377 RLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILMSATINADLFSKYF 449 (908)
Q Consensus 377 ~Iiv~T~g~Ll~~l~~~~~l~~~~~iIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiIlmSAT~~~~~~~~~f 449 (908)
-++|-.+.-+...+........+.+|.||||+= ..+-+...+..+.. ++-+-.|-+.++.+-..+-|
T Consensus 61 A~~i~~~~~i~~~i~~~~~~~~~~~v~IDEaQF---~~~~~v~~l~~lad---~lgi~Vi~~GL~~DFrgepF 127 (201)
T COG1435 61 AVVIPSDTDIFDEIAALHEKPPVDCVLIDEAQF---FDEELVYVLNELAD---RLGIPVICYGLDTDFRGEPF 127 (201)
T ss_pred ceecCChHHHHHHHHhcccCCCcCEEEEehhHh---CCHHHHHHHHHHHh---hcCCEEEEeccccccccCCC
Confidence 355556666777776654334489999999993 33333334444433 23455666776654333333
No 363
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=92.22 E-value=0.21 Score=52.00 Aligned_cols=27 Identities=26% Similarity=0.463 Sum_probs=19.8
Q ss_pred HHHHHHHh--CCeEEEEecCCCCccchHH
Q 002552 289 EFLKAVAE--NQVLVVSGETGCGKTTQLP 315 (908)
Q Consensus 289 ~~i~~i~~--~~~vii~a~TGSGKTt~~~ 315 (908)
++...+.+ ++.++|.||.|+|||+.+-
T Consensus 10 ~l~~~l~~~~~~~~~l~G~rg~GKTsLl~ 38 (234)
T PF01637_consen 10 KLKELLESGPSQHILLYGPRGSGKTSLLK 38 (234)
T ss_dssp HHHHCHHH--SSEEEEEESTTSSHHHHHH
T ss_pred HHHHHHHhhcCcEEEEEcCCcCCHHHHHH
Confidence 34444554 4799999999999997443
No 364
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.19 E-value=0.52 Score=53.25 Aligned_cols=28 Identities=36% Similarity=0.563 Sum_probs=20.0
Q ss_pred HHHHHHhCC---eEEEEecCCCCccchHHHH
Q 002552 290 FLKAVAENQ---VLVVSGETGCGKTTQLPQF 317 (908)
Q Consensus 290 ~i~~i~~~~---~vii~a~TGSGKTt~~~~~ 317 (908)
+...+.+++ .++++||.|+|||+.+-.+
T Consensus 29 l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~l 59 (367)
T PRK14970 29 LLNAIENNHLAQALLFCGPRGVGKTTCARIL 59 (367)
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHHHHH
Confidence 334444443 7889999999999766655
No 365
>PTZ00293 thymidine kinase; Provisional
Probab=91.92 E-value=0.65 Score=47.51 Aligned_cols=39 Identities=21% Similarity=0.244 Sum_probs=28.7
Q ss_pred hCCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEccc
Q 002552 296 ENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPR 339 (908)
Q Consensus 296 ~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~ 339 (908)
.|+..++.||-+||||+.++..+...... +.+++++-|.
T Consensus 3 ~G~i~vi~GpMfSGKTteLLr~i~~y~~a-----g~kv~~~kp~ 41 (211)
T PTZ00293 3 RGTISVIIGPMFSGKTTELMRLVKRFTYS-----EKKCVVIKYS 41 (211)
T ss_pred ceEEEEEECCCCChHHHHHHHHHHHHHHc-----CCceEEEEec
Confidence 36678999999999999888876655432 3356777774
No 366
>PRK11823 DNA repair protein RadA; Provisional
Probab=91.86 E-value=0.21 Score=57.67 Aligned_cols=88 Identities=19% Similarity=0.279 Sum_probs=53.4
Q ss_pred HHhCCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCCEEeEEeeccccCC
Q 002552 294 VAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLGETVGYQIRLESKRS 373 (908)
Q Consensus 294 i~~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~~~~~~~g~~vg~~~~~~~~~~ 373 (908)
+..+..++|.|++|+||||...+++..... . +.+++++. ..+...|+..+. ..++.....
T Consensus 77 i~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~---~--g~~vlYvs-~Ees~~qi~~ra-~rlg~~~~~------------- 136 (446)
T PRK11823 77 LVPGSVVLIGGDPGIGKSTLLLQVAARLAA---A--GGKVLYVS-GEESASQIKLRA-ERLGLPSDN------------- 136 (446)
T ss_pred ccCCEEEEEECCCCCCHHHHHHHHHHHHHh---c--CCeEEEEE-ccccHHHHHHHH-HHcCCChhc-------------
Confidence 334789999999999999988888776541 1 33566654 345566776664 333332111
Q ss_pred CCCcEEEEc---hHHHHHHHhcCCCCCcceEEEEechhc
Q 002552 374 AQTRLLFCT---TGVLLRQLVEDPDLSCVSHLLVDEIHE 409 (908)
Q Consensus 374 ~~~~Iiv~T---~g~Ll~~l~~~~~l~~~~~iIiDEaHe 409 (908)
+.+.. -..+++.+.. .+.++||||+++.
T Consensus 137 ----l~~~~e~~l~~i~~~i~~----~~~~lVVIDSIq~ 167 (446)
T PRK11823 137 ----LYLLAETNLEAILATIEE----EKPDLVVIDSIQT 167 (446)
T ss_pred ----EEEeCCCCHHHHHHHHHh----hCCCEEEEechhh
Confidence 22221 2334444432 3578999999983
No 367
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=91.84 E-value=0.17 Score=51.08 Aligned_cols=31 Identities=39% Similarity=0.593 Sum_probs=23.2
Q ss_pred HHHHHHHH-HHhCCeEEEEecCCCCccchHHH
Q 002552 286 MKAEFLKA-VAENQVLVVSGETGCGKTTQLPQ 316 (908)
Q Consensus 286 ~Q~~~i~~-i~~~~~vii~a~TGSGKTt~~~~ 316 (908)
.+.+.+.. +..+.+++++|+|||||||.+-.
T Consensus 13 ~~~~~l~~~v~~g~~i~I~G~tGSGKTTll~a 44 (186)
T cd01130 13 LQAAYLWLAVEARKNILISGGTGSGKTTLLNA 44 (186)
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHH
Confidence 34444444 66789999999999999986643
No 368
>PRK09087 hypothetical protein; Validated
Probab=91.82 E-value=0.65 Score=48.50 Aligned_cols=19 Identities=37% Similarity=0.608 Sum_probs=15.5
Q ss_pred CCeEEEEecCCCCccchHH
Q 002552 297 NQVLVVSGETGCGKTTQLP 315 (908)
Q Consensus 297 ~~~vii~a~TGSGKTt~~~ 315 (908)
++.++++|++|||||+.+-
T Consensus 44 ~~~l~l~G~~GsGKThLl~ 62 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLAS 62 (226)
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 5569999999999996443
No 369
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=91.72 E-value=1.1 Score=49.18 Aligned_cols=60 Identities=17% Similarity=0.200 Sum_probs=37.8
Q ss_pred EEEEchHHHHHHHhcCCCCCcceEEEEechhccchhhHHHHHHHHHHCccCCCCcEEEeccc
Q 002552 378 LLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILMSAT 439 (908)
Q Consensus 378 Iiv~T~g~Ll~~l~~~~~l~~~~~iIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiIlmSAT 439 (908)
|.|-.--.+.+.+...+....++++|||+||. ++..---.++|.+..-.++.-+|+.|..
T Consensus 88 I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~--m~~~AaNaLLKtLEEPp~~t~fiL~t~~ 147 (319)
T PRK06090 88 ITVEQIRQCNRLAQESSQLNGYRLFVIEPADA--MNESASNALLKTLEEPAPNCLFLLVTHN 147 (319)
T ss_pred CCHHHHHHHHHHHhhCcccCCceEEEecchhh--hCHHHHHHHHHHhcCCCCCeEEEEEECC
Confidence 33333333445555555677899999999995 4455666778877665555555555544
No 370
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=91.66 E-value=0.25 Score=58.80 Aligned_cols=68 Identities=19% Similarity=0.222 Sum_probs=48.8
Q ss_pred CchHHHHHHHHHHHhC--CeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHH-HHHHHH
Q 002552 282 PAFKMKAEFLKAVAEN--QVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVA-ARVSSE 353 (908)
Q Consensus 282 pi~~~Q~~~i~~i~~~--~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~-~rv~~~ 353 (908)
-.+|||.++++++... +.|+++.++-+|||..+.-++... +. ...+.+++++||..+|.... .++.-.
T Consensus 16 ~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n~~g~~-i~---~~P~~~l~v~Pt~~~a~~~~~~rl~Pm 86 (557)
T PF05876_consen 16 DRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLNWIGYS-ID---QDPGPMLYVQPTDDAAKDFSKERLDPM 86 (557)
T ss_pred CCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHhhceEE-EE---eCCCCEEEEEEcHHHHHHHHHHHHHHH
Confidence 3467999999998765 589999999999997443333222 11 23467999999999998876 445443
No 371
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.55 E-value=0.93 Score=54.38 Aligned_cols=49 Identities=16% Similarity=0.224 Sum_probs=29.0
Q ss_pred HHHHhcCCCCCcceEEEEechhccchhhHHHHHHHHHHCccCCCCcEEEec
Q 002552 387 LRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILMS 437 (908)
Q Consensus 387 l~~l~~~~~l~~~~~iIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiIlmS 437 (908)
...+...|...+..+|||||+|.. ...-...+++.+..-.+...+|+.+
T Consensus 116 ~e~~~~~P~~~~~KVvIIdEad~L--t~~a~naLLK~LEePp~~tv~IL~t 164 (620)
T PRK14954 116 RENVRYGPQKGRYRVYIIDEVHML--STAAFNAFLKTLEEPPPHAIFIFAT 164 (620)
T ss_pred HHHHHhhhhcCCCEEEEEeChhhc--CHHHHHHHHHHHhCCCCCeEEEEEe
Confidence 344444567788999999999953 3333445555554433344455544
No 372
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=91.50 E-value=0.61 Score=44.93 Aligned_cols=91 Identities=20% Similarity=0.233 Sum_probs=50.4
Q ss_pred HHhCCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCCEEeEEeeccccCC
Q 002552 294 VAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLGETVGYQIRLESKRS 373 (908)
Q Consensus 294 i~~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~~~~~~~g~~vg~~~~~~~~~~ 373 (908)
+..|+.+.|.|+.||||||.+-...-. .......|.+ .-+ ..++|...
T Consensus 23 ~~~Ge~~~i~G~nGsGKStLl~~l~G~-----~~~~~G~i~~--~~~-------------------~~i~~~~~------ 70 (144)
T cd03221 23 INPGDRIGLVGRNGAGKSTLLKLIAGE-----LEPDEGIVTW--GST-------------------VKIGYFEQ------ 70 (144)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHcCC-----CCCCceEEEE--CCe-------------------EEEEEEcc------
Confidence 347899999999999999754332111 1112334433 110 12343221
Q ss_pred CCCcEEEEchHHHHHHHhcCCCCCcceEEEEechhccchhhHHHHHHHHHH
Q 002552 374 AQTRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDL 424 (908)
Q Consensus 374 ~~~~Iiv~T~g~Ll~~l~~~~~l~~~~~iIiDEaHeR~~~~d~ll~~lk~~ 424 (908)
.+.|...+.......+.+-.++|+||-- .++|.+....+.+.+
T Consensus 71 -------lS~G~~~rv~laral~~~p~illlDEP~-~~LD~~~~~~l~~~l 113 (144)
T cd03221 71 -------LSGGEKMRLALAKLLLENPNLLLLDEPT-NHLDLESIEALEEAL 113 (144)
T ss_pred -------CCHHHHHHHHHHHHHhcCCCEEEEeCCc-cCCCHHHHHHHHHHH
Confidence 4455443333222245667899999998 667766555544444
No 373
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=91.50 E-value=0.11 Score=54.51 Aligned_cols=21 Identities=33% Similarity=0.670 Sum_probs=15.9
Q ss_pred EEEEecCCCCccchHHHHHHH
Q 002552 300 LVVSGETGCGKTTQLPQFILE 320 (908)
Q Consensus 300 vii~a~TGSGKTt~~~~~il~ 320 (908)
++|.|+.|||||+.+...+-+
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~ 21 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKD 21 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHh
Confidence 478999999999865554433
No 374
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=91.47 E-value=0.85 Score=50.40 Aligned_cols=56 Identities=13% Similarity=0.142 Sum_probs=34.7
Q ss_pred EEEEchHHHHHHHhcCCCCCcceEEEEechhccchhhHHHHHHHHHHCccCCCCcEEE
Q 002552 378 LLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLIL 435 (908)
Q Consensus 378 Iiv~T~g~Ll~~l~~~~~l~~~~~iIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiIl 435 (908)
|.|-.---+.+.+...+.....+++|+|++|. ++......++|.+....+...+|+
T Consensus 93 I~id~iR~l~~~~~~~p~~~~~kV~iiEp~~~--Ld~~a~naLLk~LEep~~~~~~Il 148 (325)
T PRK08699 93 IKIDAVREIIDNVYLTSVRGGLRVILIHPAES--MNLQAANSLLKVLEEPPPQVVFLL 148 (325)
T ss_pred cCHHHHHHHHHHHhhCcccCCceEEEEechhh--CCHHHHHHHHHHHHhCcCCCEEEE
Confidence 33333334556666666678899999999995 566666666776544333333444
No 375
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=91.46 E-value=1 Score=53.59 Aligned_cols=47 Identities=17% Similarity=0.342 Sum_probs=27.6
Q ss_pred HhcCCCCCcceEEEEechhccchhhHHHHHHHHHHCccCCCCcEEEeccc
Q 002552 390 LVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILMSAT 439 (908)
Q Consensus 390 l~~~~~l~~~~~iIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiIlmSAT 439 (908)
+...|...++.++||||+|. +.....-.+++.+.. .|..-++++.+|
T Consensus 111 ~~~~p~~~~~KVvIIDEa~~--Ls~~a~naLLK~LEe-pp~~~vfI~~tt 157 (563)
T PRK06647 111 IMFPPASSRYRVYIIDEVHM--LSNSAFNALLKTIEE-PPPYIVFIFATT 157 (563)
T ss_pred HHhchhcCCCEEEEEEChhh--cCHHHHHHHHHhhcc-CCCCEEEEEecC
Confidence 34455678999999999994 333444455665443 333333334333
No 376
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=91.44 E-value=0.55 Score=50.89 Aligned_cols=26 Identities=27% Similarity=0.441 Sum_probs=19.3
Q ss_pred HHHhCC--eEEEEecCCCCccchHHHHH
Q 002552 293 AVAENQ--VLVVSGETGCGKTTQLPQFI 318 (908)
Q Consensus 293 ~i~~~~--~vii~a~TGSGKTt~~~~~i 318 (908)
.|.+++ .+|+.||.|+|||+.+-+.+
T Consensus 156 ~ieq~~ipSmIlWGppG~GKTtlArlia 183 (554)
T KOG2028|consen 156 LIEQNRIPSMILWGPPGTGKTTLARLIA 183 (554)
T ss_pred HHHcCCCCceEEecCCCCchHHHHHHHH
Confidence 345554 68999999999998665443
No 377
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=91.34 E-value=0.62 Score=48.85 Aligned_cols=29 Identities=10% Similarity=0.287 Sum_probs=24.0
Q ss_pred HHhCCeEEEEecCCCCccchHHHHHHHHH
Q 002552 294 VAENQVLVVSGETGCGKTTQLPQFILEEE 322 (908)
Q Consensus 294 i~~~~~vii~a~TGSGKTt~~~~~il~~~ 322 (908)
+..+..+++.|++||||||...+++....
T Consensus 21 i~~g~~~~i~G~~G~GKTtl~~~~~~~~~ 49 (230)
T PRK08533 21 IPAGSLILIEGDESTGKSILSQRLAYGFL 49 (230)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 44588999999999999998888877643
No 378
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.20 E-value=0.29 Score=48.65 Aligned_cols=41 Identities=17% Similarity=0.220 Sum_probs=25.5
Q ss_pred CCCcceEEEEechhccchhhHHHHHHHHHHCccCCCCcEEEec
Q 002552 395 DLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILMS 437 (908)
Q Consensus 395 ~l~~~~~iIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiIlmS 437 (908)
.+.+-+++++||-- .++|......+.+.+...... +.|+++
T Consensus 111 l~~~p~llllDEP~-~gLD~~~~~~l~~~l~~~~~~-~tii~~ 151 (171)
T cd03228 111 LLRDPPILILDEAT-SALDPETEALILEALRALAKG-KTVIVI 151 (171)
T ss_pred HhcCCCEEEEECCC-cCCCHHHHHHHHHHHHHhcCC-CEEEEE
Confidence 34567899999987 677766655555544433333 455554
No 379
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=91.03 E-value=0.3 Score=51.32 Aligned_cols=79 Identities=16% Similarity=0.246 Sum_probs=50.6
Q ss_pred CcEEEEEcccHHHHHHHHHHHHHHhC--CCCCCEEeEEeeccccC----CCCCcEEEEchHHHHHHHhcCC-CCCcceEE
Q 002552 330 DCNIICTQPRRISAISVAARVSSERG--ENLGETVGYQIRLESKR----SAQTRLLFCTTGVLLRQLVEDP-DLSCVSHL 402 (908)
Q Consensus 330 ~~~ilv~~P~r~la~qi~~rv~~~~~--~~~g~~vg~~~~~~~~~----~~~~~Iiv~T~g~Ll~~l~~~~-~l~~~~~i 402 (908)
.+.+||+...-.=|..+.+.+..+.+ ..++....-++..+... ...++|.|+||++|..++..+. .++++.+|
T Consensus 126 sP~~lvvs~SalRa~dl~R~l~~~~~k~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~~~L~l~~l~~i 205 (252)
T PF14617_consen 126 SPHVLVVSSSALRAADLIRALRSFKGKDCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLENGALSLSNLKRI 205 (252)
T ss_pred CCEEEEEcchHHHHHHHHHHHHhhccCCchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHcCCCCcccCeEE
Confidence 45677776665555666665554432 11222222222222211 2368899999999999998887 79999999
Q ss_pred EEechh
Q 002552 403 LVDEIH 408 (908)
Q Consensus 403 IiDEaH 408 (908)
|||-=|
T Consensus 206 vlD~s~ 211 (252)
T PF14617_consen 206 VLDWSY 211 (252)
T ss_pred EEcCCc
Confidence 999866
No 380
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=91.01 E-value=0.79 Score=51.78 Aligned_cols=33 Identities=21% Similarity=0.356 Sum_probs=24.8
Q ss_pred HHHHHHHHhCCeEEEEecCCCCccchHHHHHHH
Q 002552 288 AEFLKAVAENQVLVVSGETGCGKTTQLPQFILE 320 (908)
Q Consensus 288 ~~~i~~i~~~~~vii~a~TGSGKTt~~~~~il~ 320 (908)
.++-.++..+.+.++.+|+|+|||..++-.++.
T Consensus 26 ~elKrsLDakGh~llEMPSGTGKTvsLLSli~a 58 (755)
T KOG1131|consen 26 RELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIA 58 (755)
T ss_pred HHHHHhhccCCcEEEECCCCCCcchHHHHHHHH
Confidence 445555666778999999999999776655544
No 381
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=90.97 E-value=1.4 Score=48.58 Aligned_cols=48 Identities=10% Similarity=0.130 Sum_probs=29.0
Q ss_pred HHHhcCCCCCcceEEEEechhccchhhHHHHHHHHHHCccCCCCcEEEec
Q 002552 388 RQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILMS 437 (908)
Q Consensus 388 ~~l~~~~~l~~~~~iIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiIlmS 437 (908)
..+...|......++||||+|.. ...-.-.++|.+....+...+|+.+
T Consensus 83 ~~~~~~p~~~~~kv~iI~~ad~m--~~~a~naLLK~LEepp~~t~~il~~ 130 (313)
T PRK05564 83 EEVNKKPYEGDKKVIIIYNSEKM--TEQAQNAFLKTIEEPPKGVFIILLC 130 (313)
T ss_pred HHHhcCcccCCceEEEEechhhc--CHHHHHHHHHHhcCCCCCeEEEEEe
Confidence 33335567789999999999953 3444556666665433334444433
No 382
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=90.94 E-value=0.41 Score=50.30 Aligned_cols=27 Identities=22% Similarity=0.455 Sum_probs=23.4
Q ss_pred hCCeEEEEecCCCCccchHHHHHHHHH
Q 002552 296 ENQVLVVSGETGCGKTTQLPQFILEEE 322 (908)
Q Consensus 296 ~~~~vii~a~TGSGKTt~~~~~il~~~ 322 (908)
.+..++|.|++|||||+...+++.+.+
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~ 50 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGAL 50 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHH
Confidence 478999999999999998888887654
No 383
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.90 E-value=0.19 Score=49.18 Aligned_cols=23 Identities=26% Similarity=0.547 Sum_probs=18.6
Q ss_pred HHhCCeEEEEecCCCCccchHHH
Q 002552 294 VAENQVLVVSGETGCGKTTQLPQ 316 (908)
Q Consensus 294 i~~~~~vii~a~TGSGKTt~~~~ 316 (908)
+..++.+.|.|++||||||.+-.
T Consensus 22 i~~g~~~~i~G~nGsGKStll~~ 44 (157)
T cd00267 22 LKAGEIVALVGPNGSGKSTLLRA 44 (157)
T ss_pred EcCCCEEEEECCCCCCHHHHHHH
Confidence 34788999999999999974443
No 384
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=90.86 E-value=0.66 Score=49.89 Aligned_cols=32 Identities=28% Similarity=0.513 Sum_probs=26.2
Q ss_pred HHHHHhCCeEEEEecCCCCccchHHHHHHHHH
Q 002552 291 LKAVAENQVLVVSGETGCGKTTQLPQFILEEE 322 (908)
Q Consensus 291 i~~i~~~~~vii~a~TGSGKTt~~~~~il~~~ 322 (908)
+--+..+..++|.|+||+|||+.+.+++...+
T Consensus 24 ~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~ 55 (271)
T cd01122 24 TKGLRKGELIILTAGTGVGKTTFLREYALDLI 55 (271)
T ss_pred eEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 34466789999999999999998888877654
No 385
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=90.65 E-value=0.34 Score=50.56 Aligned_cols=28 Identities=29% Similarity=0.417 Sum_probs=22.9
Q ss_pred HhCCeEEEEecCCCCccchHHHHHHHHH
Q 002552 295 AENQVLVVSGETGCGKTTQLPQFILEEE 322 (908)
Q Consensus 295 ~~~~~vii~a~TGSGKTt~~~~~il~~~ 322 (908)
..++.+.|.|++|||||+.+.+++....
T Consensus 17 ~~g~v~~I~G~~GsGKT~l~~~ia~~~~ 44 (226)
T cd01393 17 PTGRITEIFGEFGSGKTQLCLQLAVEAQ 44 (226)
T ss_pred cCCcEEEEeCCCCCChhHHHHHHHHHhh
Confidence 3478999999999999988877766543
No 386
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=90.54 E-value=0.31 Score=53.61 Aligned_cols=45 Identities=36% Similarity=0.473 Sum_probs=29.3
Q ss_pred HHHHhCCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHH
Q 002552 292 KAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRIS 342 (908)
Q Consensus 292 ~~i~~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~l 342 (908)
-.+..+.+++|+|+|||||||.+-. ++... ....+++++..++++
T Consensus 139 ~~v~~~~~ili~G~tGsGKTTll~a-l~~~~-----~~~~~iv~ied~~El 183 (308)
T TIGR02788 139 LAIASRKNIIISGGTGSGKTTFLKS-LVDEI-----PKDERIITIEDTREI 183 (308)
T ss_pred HHhhCCCEEEEECCCCCCHHHHHHH-HHccC-----CccccEEEEcCcccc
Confidence 3466788999999999999986643 33222 123356666655443
No 387
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=90.52 E-value=1.8 Score=48.49 Aligned_cols=134 Identities=18% Similarity=0.238 Sum_probs=82.9
Q ss_pred CeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCCEEeEEeeccccCCCCCc
Q 002552 298 QVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLGETVGYQIRLESKRSAQTR 377 (908)
Q Consensus 298 ~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~~~~~~~g~~vg~~~~~~~~~~~~~~ 377 (908)
.+++.+|=-||||||.+-.+.... .. ++..+.+++.=..|.+|...-+.+++..+..+ |.. ... ...
T Consensus 101 ~vImmvGLQGsGKTTt~~KLA~~l--kk-~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~-----f~~--~~~---~~P 167 (451)
T COG0541 101 TVILMVGLQGSGKTTTAGKLAKYL--KK-KGKKVLLVAADTYRPAAIEQLKQLAEQVGVPF-----FGS--GTE---KDP 167 (451)
T ss_pred eEEEEEeccCCChHhHHHHHHHHH--HH-cCCceEEEecccCChHHHHHHHHHHHHcCCce-----ecC--CCC---CCH
Confidence 478899999999998877655432 22 44555566666788888888788877665442 111 000 111
Q ss_pred EEEEchHHHHHHHhcCCCCCcceEEEEechhccchhhHHHHHHHHHHCccCCCCcEEEecccCC--hHHHHhhhC
Q 002552 378 LLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILMSATIN--ADLFSKYFG 450 (908)
Q Consensus 378 Iiv~T~g~Ll~~l~~~~~l~~~~~iIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiIlmSAT~~--~~~~~~~f~ 450 (908)
+-++..+ +... ....+++||||=|-...++.+++..+...-...+|+=-++++=|++- +...++-|+
T Consensus 168 v~Iak~a--l~~a----k~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF~ 236 (451)
T COG0541 168 VEIAKAA--LEKA----KEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKAFN 236 (451)
T ss_pred HHHHHHH--HHHH----HHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHHHh
Confidence 1122221 2222 23568999999999556777777776655556778877888888873 333444443
No 388
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=90.46 E-value=1 Score=54.30 Aligned_cols=119 Identities=18% Similarity=0.180 Sum_probs=90.4
Q ss_pred cCCCcEEEecCCHHHHHHHHHHHHhcccCCC---------------CCceEEEeccCCCChHhHHhhhCCCCC----CCc
Q 002552 552 EGDGAILVFLTGWNDISKLLDQIKVNKFLGD---------------PNKFLVLPLHGSMPTINQREIFDRPPP----NKR 612 (908)
Q Consensus 552 ~~~g~iLVF~~~~~~i~~l~~~L~~~~~~~~---------------~~~~~v~~lH~~l~~~er~~v~~~f~~----g~~ 612 (908)
..+.+.|||-.+....+-+..+|......+. ..+...+-|.|.....+|+...+.|.. ..+
T Consensus 1140 eIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~~~~FNdp~NlRaR 1219 (1567)
T KOG1015|consen 1140 EIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKWAEEFNDPTNLRAR 1219 (1567)
T ss_pred HhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHHHHHhcCcccceeE
Confidence 3467899999888877777777653111100 012345567889999999998888854 245
Q ss_pred EEEEeccccccccCCCCeEEEEeCCCccceeeccccCccccccccccHhhHHHhccccCCCCCcEEEEecChh
Q 002552 613 KIVLATNIAESSITIDDVVYVVDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRVQPGVCYKLYPRI 685 (908)
Q Consensus 613 kIlvaT~iae~GidIp~v~~VId~g~~k~~~yd~~~~~~~l~~~~iS~~~~~QR~GRaGR~~~G~~~~l~~~~ 685 (908)
-.||+|-...-|||+-+.+-||.+|...+..||- +.+=|+=|-|-..|-..|||+...
T Consensus 1220 l~LISTRAGsLGiNLvAANRVIIfDasWNPSyDt---------------QSIFRvyRfGQtKPvyiYRfiAqG 1277 (1567)
T KOG1015|consen 1220 LFLISTRAGSLGINLVAANRVIIFDASWNPSYDT---------------QSIFRVYRFGQTKPVYIYRFIAQG 1277 (1567)
T ss_pred EEEEeeccCccccceeecceEEEEecccCCccch---------------HHHHHHHhhcCcCceeehhhhhcc
Confidence 6899999999999999999999999998888773 456688888888999999998653
No 389
>PRK10865 protein disaggregation chaperone; Provisional
Probab=90.45 E-value=1.8 Score=54.32 Aligned_cols=121 Identities=26% Similarity=0.367 Sum_probs=59.4
Q ss_pred eEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCCEEeEEeeccccCCCCCcE
Q 002552 299 VLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLGETVGYQIRLESKRSAQTRL 378 (908)
Q Consensus 299 ~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~~~~~~~g~~vg~~~~~~~~~~~~~~I 378 (908)
.++++||||+|||+.+- .|.+.++.. + .+ .+++ ...+.... ..+....|...| .+||..
T Consensus 600 ~~Lf~Gp~G~GKT~lA~-aLa~~l~~~--~-~~-~i~i-d~se~~~~--~~~~~LiG~~pg-y~g~~~------------ 658 (857)
T PRK10865 600 SFLFLGPTGVGKTELCK-ALANFMFDS--D-DA-MVRI-DMSEFMEK--HSVSRLVGAPPG-YVGYEE------------ 658 (857)
T ss_pred eEEEECCCCCCHHHHHH-HHHHHhhcC--C-Cc-EEEE-EhHHhhhh--hhHHHHhCCCCc-ccccch------------
Confidence 58999999999998664 344444321 1 12 2222 22222211 123333443333 333321
Q ss_pred EEEchHHHHHHHhcCCCCCcceEEEEechhccchhhHHHHHHHHHHCcc--------CCCCc--EEEecccCChHHHHhh
Q 002552 379 LFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPR--------RPDLR--LILMSATINADLFSKY 448 (908)
Q Consensus 379 iv~T~g~Ll~~l~~~~~l~~~~~iIiDEaHeR~~~~d~ll~~lk~~~~~--------~~~~q--iIlmSAT~~~~~~~~~ 448 (908)
-|.|...+.. ..+++|+|||++. +..+....++..+-.- .-+.+ +|+||..+..+.+.+.
T Consensus 659 ----~g~l~~~v~~----~p~~vLllDEiek--a~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN~g~~~~~~~ 728 (857)
T PRK10865 659 ----GGYLTEAVRR----RPYSVILLDEVEK--AHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQER 728 (857)
T ss_pred ----hHHHHHHHHh----CCCCeEEEeehhh--CCHHHHHHHHHHHhhCceecCCceEEeecccEEEEeCCcchHHHHHh
Confidence 1233343432 3468999999995 3444444444433211 01233 5677777766655554
Q ss_pred hC
Q 002552 449 FG 450 (908)
Q Consensus 449 f~ 450 (908)
|+
T Consensus 729 ~~ 730 (857)
T PRK10865 729 FG 730 (857)
T ss_pred cc
Confidence 44
No 390
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=90.30 E-value=0.56 Score=50.80 Aligned_cols=67 Identities=19% Similarity=0.209 Sum_probs=38.5
Q ss_pred HHHHHHHh----CCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCC
Q 002552 289 EFLKAVAE----NQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGEN 357 (908)
Q Consensus 289 ~~i~~i~~----~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~~~~~~ 357 (908)
++...+.. .+.+.|+|..|+|||+.+..++.+.... ..-...+.+.........++.+.+...++..
T Consensus 7 ~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~--~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~ 77 (287)
T PF00931_consen 7 KLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIK--NRFDGVIWVSLSKNPSLEQLLEQILRQLGEP 77 (287)
T ss_dssp HHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHC--CCCTEEEEEEEES-SCCHHHHHHHHHHHTCC
T ss_pred HHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccc--ccccccccccccccccccccccccccccccc
Confidence 34455544 5689999999999999887776443322 1123334343333333355555566665543
No 391
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=90.25 E-value=1.4 Score=54.03 Aligned_cols=19 Identities=37% Similarity=0.510 Sum_probs=16.1
Q ss_pred eEEEEecCCCCccchHHHH
Q 002552 299 VLVVSGETGCGKTTQLPQF 317 (908)
Q Consensus 299 ~vii~a~TGSGKTt~~~~~ 317 (908)
.+++.||+|+||||.+-.+
T Consensus 54 slLL~GPpGtGKTTLA~aI 72 (725)
T PRK13341 54 SLILYGPPGVGKTTLARII 72 (725)
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 7999999999999866544
No 392
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=90.25 E-value=0.27 Score=49.04 Aligned_cols=23 Identities=26% Similarity=0.463 Sum_probs=18.8
Q ss_pred HHhCCeEEEEecCCCCccchHHH
Q 002552 294 VAENQVLVVSGETGCGKTTQLPQ 316 (908)
Q Consensus 294 i~~~~~vii~a~TGSGKTt~~~~ 316 (908)
+..|+.+.+.|+.||||||.+-.
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~~ 47 (173)
T cd03246 25 IEPGESLAIIGPSGSGKSTLARL 47 (173)
T ss_pred ECCCCEEEEECCCCCCHHHHHHH
Confidence 34689999999999999985443
No 393
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=89.99 E-value=0.5 Score=50.61 Aligned_cols=52 Identities=27% Similarity=0.374 Sum_probs=30.3
Q ss_pred HHHHHHHHHH-H-hCCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHH
Q 002552 285 KMKAEFLKAV-A-ENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRI 341 (908)
Q Consensus 285 ~~Q~~~i~~i-~-~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~ 341 (908)
+.|.+.+..+ . .+..++|+|+|||||||.+-.++ ..+.. ...+|+.+.-..|
T Consensus 66 ~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l~all-~~i~~----~~~~iitiEdp~E 119 (264)
T cd01129 66 PENLEIFRKLLEKPHGIILVTGPTGSGKTTTLYSAL-SELNT----PEKNIITVEDPVE 119 (264)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHH-hhhCC----CCCeEEEECCCce
Confidence 3444455443 3 34579999999999998664433 33211 2345666654433
No 394
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=89.95 E-value=0.25 Score=39.84 Aligned_cols=19 Identities=37% Similarity=0.697 Sum_probs=16.1
Q ss_pred hCCeEEEEecCCCCccchH
Q 002552 296 ENQVLVVSGETGCGKTTQL 314 (908)
Q Consensus 296 ~~~~vii~a~TGSGKTt~~ 314 (908)
.+++++|.|++||||||.+
T Consensus 22 ~g~~tli~G~nGsGKSTll 40 (62)
T PF13555_consen 22 RGDVTLITGPNGSGKSTLL 40 (62)
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3568999999999999755
No 395
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=89.94 E-value=0.52 Score=57.55 Aligned_cols=69 Identities=14% Similarity=0.233 Sum_probs=54.7
Q ss_pred cCCCcEEEecCCHHHHHHHHHHHHhcccCCCCCceEEEeccCCCChHhHHhhhCCCCCCCcEEEEecccc
Q 002552 552 EGDGAILVFLTGWNDISKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIA 621 (908)
Q Consensus 552 ~~~g~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lH~~l~~~er~~v~~~f~~g~~kIlvaT~ia 621 (908)
..+.++++-+||..-+...++.|..-..........+. +||.|+.++++++++.+.+|..+|+|+|+-.
T Consensus 123 ~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~-yh~~l~~~ekee~le~i~~gdfdIlitTs~F 191 (1187)
T COG1110 123 KKGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVV-YHSALPTKEKEEALERIESGDFDILITTSQF 191 (1187)
T ss_pred hcCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeee-eccccchHHHHHHHHHHhcCCccEEEEeHHH
Confidence 34578899999999999988888753322222344455 9999999999999999999999999999843
No 396
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.92 E-value=1.6 Score=52.68 Aligned_cols=51 Identities=20% Similarity=0.412 Sum_probs=30.7
Q ss_pred HHHHHhcCCCCCcceEEEEechhccchhhHHHHHHHHHHCccCCCCcEEEeccc
Q 002552 386 LLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILMSAT 439 (908)
Q Consensus 386 Ll~~l~~~~~l~~~~~iIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiIlmSAT 439 (908)
++..+...|....+.++||||+|. +..+-.-.+++.+.. .|+--++++.+|
T Consensus 109 li~~~~~~P~~~~~KVvIIdea~~--Ls~~a~naLLK~LEe-pp~~tifIL~tt 159 (614)
T PRK14971 109 LIEQVRIPPQIGKYKIYIIDEVHM--LSQAAFNAFLKTLEE-PPSYAIFILATT 159 (614)
T ss_pred HHHHHhhCcccCCcEEEEEECccc--CCHHHHHHHHHHHhC-CCCCeEEEEEeC
Confidence 344445566788999999999995 333444455555544 444334445444
No 397
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=89.89 E-value=2.2 Score=46.34 Aligned_cols=131 Identities=17% Similarity=0.225 Sum_probs=71.0
Q ss_pred CeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEc--ccHHHHHHHHHHHHHHhCCCCCCEEeEEeeccccCCCC
Q 002552 298 QVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQ--PRRISAISVAARVSSERGENLGETVGYQIRLESKRSAQ 375 (908)
Q Consensus 298 ~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~--P~r~la~qi~~rv~~~~~~~~g~~vg~~~~~~~~~~~~ 375 (908)
.+++++|-.|+||||.+-....... . . +.+|++.+ --|+.|++.-+...+..+..+ + ... .-...
T Consensus 140 ~Vil~vGVNG~GKTTTIaKLA~~l~-~--~--g~~VllaA~DTFRAaAiEQL~~w~er~gv~v---I----~~~-~G~Dp 206 (340)
T COG0552 140 FVILFVGVNGVGKTTTIAKLAKYLK-Q--Q--GKSVLLAAGDTFRAAAIEQLEVWGERLGVPV---I----SGK-EGADP 206 (340)
T ss_pred EEEEEEecCCCchHhHHHHHHHHHH-H--C--CCeEEEEecchHHHHHHHHHHHHHHHhCCeE---E----ccC-CCCCc
Confidence 3889999999999998877654432 1 2 23444433 468888777666666555432 1 111 11111
Q ss_pred CcEEEEchHHHHHHHhcCCCCCcceEEEEechhccchhhHHHHHHHHHHCc-cCC------CCcEEEecccCChHH--HH
Q 002552 376 TRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLP-RRP------DLRLILMSATINADL--FS 446 (908)
Q Consensus 376 ~~Iiv~T~g~Ll~~l~~~~~l~~~~~iIiDEaHeR~~~~d~ll~~lk~~~~-~~~------~~qiIlmSAT~~~~~--~~ 446 (908)
..| ..+.+... .-.++++|++|=|- |.-+..-|+.-|+.+.+ ..| .-.++.+=||.-.+. -+
T Consensus 207 AaV-------afDAi~~A-kar~~DvvliDTAG-RLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QA 277 (340)
T COG0552 207 AAV-------AFDAIQAA-KARGIDVVLIDTAG-RLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQA 277 (340)
T ss_pred HHH-------HHHHHHHH-HHcCCCEEEEeCcc-cccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHH
Confidence 223 23333221 23689999999999 64443333333333332 222 224555589884443 33
Q ss_pred hhhC
Q 002552 447 KYFG 450 (908)
Q Consensus 447 ~~f~ 450 (908)
+.|.
T Consensus 278 k~F~ 281 (340)
T COG0552 278 KIFN 281 (340)
T ss_pred HHHH
Confidence 4554
No 398
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=89.89 E-value=0.61 Score=56.50 Aligned_cols=69 Identities=13% Similarity=0.134 Sum_probs=48.9
Q ss_pred CCCchHHHHHHHHHHH----hC-CeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHh
Q 002552 280 KLPAFKMKAEFLKAVA----EN-QVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSER 354 (908)
Q Consensus 280 ~lpi~~~Q~~~i~~i~----~~-~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~~~ 354 (908)
...+...|...+..+. ++ +..++.|-||||||+.+...+... +..+||++|...+|.|++..++..+
T Consensus 7 ~~~~~~~Q~~ai~~l~~~~~~~~~~~~l~Gvtgs~kt~~~a~~~~~~--------~~p~Lvi~~n~~~A~ql~~el~~f~ 78 (655)
T TIGR00631 7 PFQPAGDQPKAIAKLVEGLTDGEKHQTLLGVTGSGKTFTMANVIAQV--------NRPTLVIAHNKTLAAQLYNEFKEFF 78 (655)
T ss_pred CCCCChHHHHHHHHHHHhhhcCCCcEEEECCCCcHHHHHHHHHHHHh--------CCCEEEEECCHHHHHHHHHHHHHhC
Confidence 3445566766666653 33 255689999999996555433221 2357888999999999999998887
Q ss_pred CC
Q 002552 355 GE 356 (908)
Q Consensus 355 ~~ 356 (908)
..
T Consensus 79 p~ 80 (655)
T TIGR00631 79 PE 80 (655)
T ss_pred CC
Confidence 64
No 399
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=89.74 E-value=0.79 Score=45.47 Aligned_cols=82 Identities=17% Similarity=0.146 Sum_probs=47.6
Q ss_pred EEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCCEEeEEeeccccCCCCCcEE
Q 002552 300 LVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLGETVGYQIRLESKRSAQTRLL 379 (908)
Q Consensus 300 vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~~~~~~~g~~vg~~~~~~~~~~~~~~Ii 379 (908)
++|.|++|||||+.+.+++... +.+++++.-.+..-..+.+|+....... +..=.+
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~--------~~~~~y~at~~~~d~em~~rI~~H~~~R----------------~~~w~t 57 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAEL--------GGPVTYIATAEAFDDEMAERIARHRKRR----------------PAHWRT 57 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhc--------CCCeEEEEccCcCCHHHHHHHHHHHHhC----------------CCCceE
Confidence 6899999999998887776541 2356666555555556666665422111 111223
Q ss_pred EEchHHHHHHHhcCCCCCcceEEEEechh
Q 002552 380 FCTTGVLLRQLVEDPDLSCVSHLLVDEIH 408 (908)
Q Consensus 380 v~T~g~Ll~~l~~~~~l~~~~~iIiDEaH 408 (908)
+-+|..|.+.+...+ ..+.|+||=+.
T Consensus 58 ~E~~~~l~~~l~~~~---~~~~VLIDclt 83 (169)
T cd00544 58 IETPRDLVSALKELD---PGDVVLIDCLT 83 (169)
T ss_pred eecHHHHHHHHHhcC---CCCEEEEEcHh
Confidence 345555666553321 34567777655
No 400
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=89.62 E-value=1.2 Score=50.08 Aligned_cols=88 Identities=19% Similarity=0.274 Sum_probs=52.0
Q ss_pred HHhCCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCCEEeEEeeccccCC
Q 002552 294 VAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLGETVGYQIRLESKRS 373 (908)
Q Consensus 294 i~~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~~~~~~~g~~vg~~~~~~~~~~ 373 (908)
+..+..+++.|++|+||||.+.+++..... . +.+++++.- .+...|+..+... ++....
T Consensus 79 i~~GslvLI~G~pG~GKStLllq~a~~~a~---~--g~~VlYvs~-EEs~~qi~~Ra~r-lg~~~~-------------- 137 (372)
T cd01121 79 LVPGSVILIGGDPGIGKSTLLLQVAARLAK---R--GGKVLYVSG-EESPEQIKLRADR-LGISTE-------------- 137 (372)
T ss_pred ccCCeEEEEEeCCCCCHHHHHHHHHHHHHh---c--CCeEEEEEC-CcCHHHHHHHHHH-cCCCcc--------------
Confidence 334789999999999999988888765432 1 236766543 2344566555432 232111
Q ss_pred CCCcEEEE---chHHHHHHHhcCCCCCcceEEEEechhc
Q 002552 374 AQTRLLFC---TTGVLLRQLVEDPDLSCVSHLLVDEIHE 409 (908)
Q Consensus 374 ~~~~Iiv~---T~g~Ll~~l~~~~~l~~~~~iIiDEaHe 409 (908)
++.+. .-+.+++.+.. .+.++||||+++.
T Consensus 138 ---~l~l~~e~~le~I~~~i~~----~~~~lVVIDSIq~ 169 (372)
T cd01121 138 ---NLYLLAETNLEDILASIEE----LKPDLVIIDSIQT 169 (372)
T ss_pred ---cEEEEccCcHHHHHHHHHh----cCCcEEEEcchHH
Confidence 11111 12445555532 3678999999983
No 401
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=89.60 E-value=0.47 Score=53.37 Aligned_cols=26 Identities=31% Similarity=0.356 Sum_probs=21.3
Q ss_pred HHHHHhCCeEEEEecCCCCccchHHH
Q 002552 291 LKAVAENQVLVVSGETGCGKTTQLPQ 316 (908)
Q Consensus 291 i~~i~~~~~vii~a~TGSGKTt~~~~ 316 (908)
++-+.++.|++..||+|+|||..+..
T Consensus 203 ~~fve~~~Nli~lGp~GTGKThla~~ 228 (449)
T TIGR02688 203 LPLVEPNYNLIELGPKGTGKSYIYNN 228 (449)
T ss_pred HHHHhcCCcEEEECCCCCCHHHHHHH
Confidence 36677899999999999999965443
No 402
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=89.42 E-value=0.83 Score=45.72 Aligned_cols=24 Identities=38% Similarity=0.562 Sum_probs=19.9
Q ss_pred HHHhCCeEEEEecCCCCccchHHH
Q 002552 293 AVAENQVLVVSGETGCGKTTQLPQ 316 (908)
Q Consensus 293 ~i~~~~~vii~a~TGSGKTt~~~~ 316 (908)
.+..+..+.+.||.||||||.+-.
T Consensus 21 ~i~~Ge~~~l~G~nGsGKSTLl~~ 44 (177)
T cd03222 21 VVKEGEVIGIVGPNGTGKTTAVKI 44 (177)
T ss_pred EECCCCEEEEECCCCChHHHHHHH
Confidence 456789999999999999985543
No 403
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=89.37 E-value=0.77 Score=56.27 Aligned_cols=79 Identities=16% Similarity=0.205 Sum_probs=64.5
Q ss_pred CCCcEEEecCCHHHHHHHHHHHHhcccCCCCCceEEEeccCCCChHhHHhhhCCCCCCCcEEEEecc-ccccccCCCCeE
Q 002552 553 GDGAILVFLTGWNDISKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATN-IAESSITIDDVV 631 (908)
Q Consensus 553 ~~g~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lH~~l~~~er~~v~~~f~~g~~kIlvaT~-iae~GidIp~v~ 631 (908)
.+.++||.+||+.-+...++.+.... . ..++.+..+||+++..+|++++....+|...|||+|. .+...+.+.++.
T Consensus 309 ~g~q~lilaPT~~LA~Q~~~~l~~l~--~-~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~~~l~ 385 (681)
T PRK10917 309 AGYQAALMAPTEILAEQHYENLKKLL--E-PLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVEFHNLG 385 (681)
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHH--h-hcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccchhcccc
Confidence 35689999999999998888877521 1 1357899999999999999999999999999999997 445567788888
Q ss_pred EEE
Q 002552 632 YVV 634 (908)
Q Consensus 632 ~VI 634 (908)
+||
T Consensus 386 lvV 388 (681)
T PRK10917 386 LVI 388 (681)
T ss_pred eEE
Confidence 877
No 404
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=89.37 E-value=1.1 Score=49.22 Aligned_cols=146 Identities=17% Similarity=0.180 Sum_probs=74.7
Q ss_pred CCCchHHHHHHHHHHHhCC------eEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEc-----ccHHHHHHHHH
Q 002552 280 KLPAFKMKAEFLKAVAENQ------VLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQ-----PRRISAISVAA 348 (908)
Q Consensus 280 ~lpi~~~Q~~~i~~i~~~~------~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~-----P~r~la~qi~~ 348 (908)
..|-...|-..+..+..++ .+++-|.+|||||..+-+++-.. +- ..+++. -.+.+-.++..
T Consensus 7 ~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~-----n~---~~vw~n~~ecft~~~lle~IL~ 78 (438)
T KOG2543|consen 7 NVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKL-----NL---ENVWLNCVECFTYAILLEKILN 78 (438)
T ss_pred CccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhc-----CC---cceeeehHHhccHHHHHHHHHH
Confidence 3566667777777777654 35889999999996665554332 11 111111 34555555544
Q ss_pred HHHHHhCCCCCCEEeEEeeccccCCCCCcEEEEchHHHHHHHhcCCCCCcceEEEEechhc-cchhhHHHHHHHHHHCcc
Q 002552 349 RVSSERGENLGETVGYQIRLESKRSAQTRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHE-RGMNEDFLLIILRDLLPR 427 (908)
Q Consensus 349 rv~~~~~~~~g~~vg~~~~~~~~~~~~~~Iiv~T~g~Ll~~l~~~~~l~~~~~iIiDEaHe-R~~~~d~ll~~lk~~~~~ 427 (908)
.+. .... -|..++ +....+++--.++.........+..-+||+|-|+. |+.++-.+..+++.-.-.
T Consensus 79 ~~~--~~d~----dg~~~~-------~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~ 145 (438)
T KOG2543|consen 79 KSQ--LADK----DGDKVE-------GDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELL 145 (438)
T ss_pred Hhc--cCCC----chhhhh-------hHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHh
Confidence 431 0011 111111 11122222222222221122335678999999994 555555555555443223
Q ss_pred CCCCcEEEecccCChHHHH
Q 002552 428 RPDLRLILMSATINADLFS 446 (908)
Q Consensus 428 ~~~~qiIlmSAT~~~~~~~ 446 (908)
..+.-.|++|+++....+-
T Consensus 146 ~~~~i~iils~~~~e~~y~ 164 (438)
T KOG2543|consen 146 NEPTIVIILSAPSCEKQYL 164 (438)
T ss_pred CCCceEEEEeccccHHHhh
Confidence 3334567788887655433
No 405
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=89.36 E-value=3.2 Score=46.44 Aligned_cols=130 Identities=15% Similarity=0.137 Sum_probs=56.2
Q ss_pred EEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHH---HHHHHhCCCCCCEEeEEeecccc--CCCC
Q 002552 301 VVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAA---RVSSERGENLGETVGYQIRLESK--RSAQ 375 (908)
Q Consensus 301 ii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~---rv~~~~~~~~g~~vg~~~~~~~~--~~~~ 375 (908)
++.++.|+|||+.....++..++... ....++++.....+...+.+ .+...... . ..+.+....+.. ...+
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~--~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~nG 76 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRP--PGRRVIIASTYRQARDIFGRFWKGIIELLPS-W-FEIKFNEWNDRKIILPNG 76 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSS--S--EEEEEESSHHHHHHHHHHHHHHHHTS-T-T-TS--EEEE-SSEEEETTS
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCC--CCcEEEEecCHHHHHHHHHHhHHHHHHHHHH-h-cCcccccCCCCcEEecCc
Confidence 57899999999988887777765432 12466666455555554333 22222222 1 112221111111 1345
Q ss_pred CcEEEEchHH--HHHHHhcCCCCCcceEEEEechhccchhhHHHHHHHHHHCccCCCCcEEEecccC
Q 002552 376 TRLLFCTTGV--LLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILMSATI 440 (908)
Q Consensus 376 ~~Iiv~T~g~--Ll~~l~~~~~l~~~~~iIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiIlmSAT~ 440 (908)
..|.+.+... -..-+.. ..+++||+||+-. +..+.....+............++.|-|.
T Consensus 77 ~~i~~~~~~~~~~~~~~~G----~~~~~i~iDE~~~--~~~~~~~~~~~~~~~~~~~~~~~~~s~p~ 137 (384)
T PF03237_consen 77 SRIQFRGADSPDSGDNIRG----FEYDLIIIDEAAK--VPDDAFSELIRRLRATWGGSIRMYISTPP 137 (384)
T ss_dssp -EEEEES-----SHHHHHT----S--SEEEEESGGG--STTHHHHHHHHHHHHCSTT--EEEEEE--
T ss_pred eEEEEeccccccccccccc----cccceeeeeeccc--CchHHHHHHHHhhhhcccCcceEEeecCC
Confidence 5676666432 1122322 5788999999763 22233333344433333333333555554
No 406
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=89.29 E-value=1.6 Score=48.89 Aligned_cols=29 Identities=21% Similarity=0.232 Sum_probs=21.2
Q ss_pred HHhCCeEEEEecCCCCccchHHHHHHHHHH
Q 002552 294 VAENQVLVVSGETGCGKTTQLPQFILEEEL 323 (908)
Q Consensus 294 i~~~~~vii~a~TGSGKTt~~~~~il~~~~ 323 (908)
|-.|+..+|.||.|+||||.+-. |.....
T Consensus 166 IGkGQR~lIvgppGvGKTTLaK~-Ian~I~ 194 (416)
T PRK09376 166 IGKGQRGLIVAPPKAGKTVLLQN-IANSIT 194 (416)
T ss_pred cccCceEEEeCCCCCChhHHHHH-HHHHHH
Confidence 34688999999999999974433 554443
No 407
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=89.13 E-value=0.28 Score=56.78 Aligned_cols=51 Identities=16% Similarity=0.329 Sum_probs=36.9
Q ss_pred HHHHHHhcCCCCCcceEEEEechhccchhhHHHHHHHHHHCccCCCCcEEEec
Q 002552 385 VLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILMS 437 (908)
Q Consensus 385 ~Ll~~l~~~~~l~~~~~iIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiIlmS 437 (908)
-|.+.....|.-.++.+.||||||. +-..-.-.+||.+..-.+.+..|+.+
T Consensus 106 ~i~e~v~y~P~~~ryKVyiIDEvHM--LS~~afNALLKTLEEPP~hV~FIlAT 156 (515)
T COG2812 106 EIIEKVNYAPSEGRYKVYIIDEVHM--LSKQAFNALLKTLEEPPSHVKFILAT 156 (515)
T ss_pred HHHHHhccCCccccceEEEEecHHh--hhHHHHHHHhcccccCccCeEEEEec
Confidence 3555555566788999999999994 66777788888876655555555543
No 408
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=89.11 E-value=1.4 Score=50.20 Aligned_cols=106 Identities=21% Similarity=0.328 Sum_probs=61.1
Q ss_pred eEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCCEEeEEeeccccCCCCCcE
Q 002552 299 VLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLGETVGYQIRLESKRSAQTRL 378 (908)
Q Consensus 299 ~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~~~~~~~g~~vg~~~~~~~~~~~~~~I 378 (908)
.+++.||.|||||+.+.+..+... -+-|=++.|....-.+=..+++..
T Consensus 540 SvLl~Gp~~sGKTaLAA~iA~~S~-------FPFvKiiSpe~miG~sEsaKc~~i------------------------- 587 (744)
T KOG0741|consen 540 SVLLEGPPGSGKTALAAKIALSSD-------FPFVKIISPEDMIGLSESAKCAHI------------------------- 587 (744)
T ss_pred EEEEecCCCCChHHHHHHHHhhcC-------CCeEEEeChHHccCccHHHHHHHH-------------------------
Confidence 589999999999987777665532 234555556432221111111110
Q ss_pred EEEchHHHHHHHhcCCCCCcceEEEEechhccch--------hhHHHHHHHHHHCccCC--CCcEEEecccCChHHHH
Q 002552 379 LFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGM--------NEDFLLIILRDLLPRRP--DLRLILMSATINADLFS 446 (908)
Q Consensus 379 iv~T~g~Ll~~l~~~~~l~~~~~iIiDEaHeR~~--------~~d~ll~~lk~~~~~~~--~~qiIlmSAT~~~~~~~ 446 (908)
...+.+. .-+.+++||||++. |-+ ....+++.|+.++++.| ..|+++|..|-..+.++
T Consensus 588 ----~k~F~DA-----YkS~lsiivvDdiE-rLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~ 655 (744)
T KOG0741|consen 588 ----KKIFEDA-----YKSPLSIIVVDDIE-RLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQ 655 (744)
T ss_pred ----HHHHHHh-----hcCcceEEEEcchh-hhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHH
Confidence 1112222 22567888888887 432 24456777777776554 45888887776555443
No 409
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=89.11 E-value=0.22 Score=52.76 Aligned_cols=22 Identities=41% Similarity=0.748 Sum_probs=17.5
Q ss_pred CCeEEEEecCCCCccchHHHHH
Q 002552 297 NQVLVVSGETGCGKTTQLPQFI 318 (908)
Q Consensus 297 ~~~vii~a~TGSGKTt~~~~~i 318 (908)
.--++|+|||||||||.+.-.|
T Consensus 125 ~GLILVTGpTGSGKSTTlAamI 146 (353)
T COG2805 125 RGLILVTGPTGSGKSTTLAAMI 146 (353)
T ss_pred CceEEEeCCCCCcHHHHHHHHH
Confidence 3468999999999998776544
No 410
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=89.04 E-value=0.93 Score=49.68 Aligned_cols=20 Identities=35% Similarity=0.433 Sum_probs=16.0
Q ss_pred CeEEEEecCCCCccchHHHH
Q 002552 298 QVLVVSGETGCGKTTQLPQF 317 (908)
Q Consensus 298 ~~vii~a~TGSGKTt~~~~~ 317 (908)
+.+++.||+|+|||+.+-.+
T Consensus 31 ~~~ll~Gp~G~GKT~la~~i 50 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTLAHII 50 (305)
T ss_pred CeEEEECCCCCCHHHHHHHH
Confidence 46999999999999655433
No 411
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=88.99 E-value=0.42 Score=52.50 Aligned_cols=47 Identities=19% Similarity=0.287 Sum_probs=33.6
Q ss_pred HHHHHHhCCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHH
Q 002552 290 FLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRIS 342 (908)
Q Consensus 290 ~i~~i~~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~l 342 (908)
++.++..+++++++|+|||||||..-..+ ..+ .+..+++.+.-+.++
T Consensus 136 L~~~ie~~~siii~G~t~sGKTt~lnall-~~I-----p~~~rivtIEdt~E~ 182 (312)
T COG0630 136 LWLAIEARKSIIICGGTASGKTTLLNALL-DFI-----PPEERIVTIEDTPEL 182 (312)
T ss_pred HHHHHHcCCcEEEECCCCCCHHHHHHHHH-HhC-----CchhcEEEEeccccc
Confidence 77888899999999999999998554332 222 234577777666554
No 412
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=88.95 E-value=0.46 Score=55.71 Aligned_cols=49 Identities=18% Similarity=0.260 Sum_probs=35.3
Q ss_pred hCCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHH
Q 002552 296 ENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARV 350 (908)
Q Consensus 296 ~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv 350 (908)
.+..++|.||+|+||||...+++.+.+. ++ -+++++. .-+...|+..+.
T Consensus 262 ~gs~~li~G~~G~GKt~l~~~f~~~~~~---~g--e~~~y~s-~eEs~~~i~~~~ 310 (484)
T TIGR02655 262 KDSIILATGATGTGKTLLVSKFLENACA---NK--ERAILFA-YEESRAQLLRNA 310 (484)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHH---CC--CeEEEEE-eeCCHHHHHHHH
Confidence 4689999999999999999999887642 22 2444433 456667777765
No 413
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=88.84 E-value=0.81 Score=45.74 Aligned_cols=24 Identities=33% Similarity=0.519 Sum_probs=19.9
Q ss_pred HHhCCeEEEEecCCCCccchHHHH
Q 002552 294 VAENQVLVVSGETGCGKTTQLPQF 317 (908)
Q Consensus 294 i~~~~~vii~a~TGSGKTt~~~~~ 317 (908)
+..|..+.+.||.||||||.+-..
T Consensus 18 i~~G~~~~l~G~nG~GKSTLl~~i 41 (176)
T cd03238 18 IPLNVLVVVTGVSGSGKSTLVNEG 41 (176)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHH
Confidence 456889999999999999877543
No 414
>COG1074 RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]
Probab=88.82 E-value=0.68 Score=60.01 Aligned_cols=63 Identities=21% Similarity=0.191 Sum_probs=49.9
Q ss_pred HHhCCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCC
Q 002552 294 VAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGE 356 (908)
Q Consensus 294 i~~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~~~~~ 356 (908)
.-.+++++|.|..|||||..+...++..++....-....|||+..|+.+|.++..|+.+.+..
T Consensus 13 ~~~~~~~lveASAGSGKT~vL~~r~lrlLl~~~~~~v~~ILvvTFT~aAa~Emk~RI~~~L~~ 75 (1139)
T COG1074 13 SPPGQSVLVEASAGTGKTFVLAERVLRLLLEGGPLDVDEILVVTFTKAAAAEMKERIRDRLKE 75 (1139)
T ss_pred cCCCCcEEEEEcCCCCchhHHHHHHHHHHhhcCCCChhHeeeeeccHHHHHHHHHHHHHHHHH
Confidence 345779999999999999888888888776532112457999999999999999998776543
No 415
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=88.74 E-value=0.69 Score=45.58 Aligned_cols=103 Identities=14% Similarity=0.118 Sum_probs=53.3
Q ss_pred HHhCCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEc-ccHHHHHHHHHHHHHHhCCCCCCEEeEEeeccccC
Q 002552 294 VAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQ-PRRISAISVAARVSSERGENLGETVGYQIRLESKR 372 (908)
Q Consensus 294 i~~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~-P~r~la~qi~~rv~~~~~~~~g~~vg~~~~~~~~~ 372 (908)
+..|..+.+.|+.||||||.+-...-. . ......|.+-- +.... ...+.. ...++|...
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~i~G~--~---~~~~G~v~~~g~~~~~~--~~~~~~--------~~~i~~~~q----- 82 (163)
T cd03216 23 VRRGEVHALLGENGAGKSTLMKILSGL--Y---KPDSGEILVDGKEVSFA--SPRDAR--------RAGIAMVYQ----- 82 (163)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCC--C---CCCCeEEEECCEECCcC--CHHHHH--------hcCeEEEEe-----
Confidence 457899999999999999755433211 1 11233444311 10000 000000 012344322
Q ss_pred CCCCcEEEEchHHHHHHHhcCCCCCcceEEEEechhccchhhHHHHHHHHHHC
Q 002552 373 SAQTRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLL 425 (908)
Q Consensus 373 ~~~~~Iiv~T~g~Ll~~l~~~~~l~~~~~iIiDEaHeR~~~~d~ll~~lk~~~ 425 (908)
.+.|...+.......+.+-+++++||-- .++|.+....+.+.+.
T Consensus 83 --------LS~G~~qrl~laral~~~p~illlDEP~-~~LD~~~~~~l~~~l~ 126 (163)
T cd03216 83 --------LSVGERQMVEIARALARNARLLILDEPT-AALTPAEVERLFKVIR 126 (163)
T ss_pred --------cCHHHHHHHHHHHHHhcCCCEEEEECCC-cCCCHHHHHHHHHHHH
Confidence 4555444333332344566899999998 6777766555544443
No 416
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=88.70 E-value=1.7 Score=50.32 Aligned_cols=30 Identities=33% Similarity=0.346 Sum_probs=21.1
Q ss_pred HHHHHhCC---eEEEEecCCCCccchHHHHHHH
Q 002552 291 LKAVAENQ---VLVVSGETGCGKTTQLPQFILE 320 (908)
Q Consensus 291 i~~i~~~~---~vii~a~TGSGKTt~~~~~il~ 320 (908)
...+..++ .+|+.||.|+|||+.+-.+.-.
T Consensus 30 ~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~ 62 (451)
T PRK06305 30 KNALRFNRAAHAYLFSGIRGTGKTTLARIFAKA 62 (451)
T ss_pred HHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHH
Confidence 33444443 5789999999999877665443
No 417
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=88.43 E-value=0.39 Score=53.73 Aligned_cols=30 Identities=37% Similarity=0.726 Sum_probs=21.4
Q ss_pred HHHHH-hCCeEEEEecCCCCccchHHHHHHHH
Q 002552 291 LKAVA-ENQVLVVSGETGCGKTTQLPQFILEE 321 (908)
Q Consensus 291 i~~i~-~~~~vii~a~TGSGKTt~~~~~il~~ 321 (908)
.+.+. .+..++|+|||||||||.+-. ++..
T Consensus 127 ~~~~~~~~glilI~GpTGSGKTTtL~a-Ll~~ 157 (358)
T TIGR02524 127 IDAIAPQEGIVFITGATGSGKSTLLAA-IIRE 157 (358)
T ss_pred HHHHhccCCEEEEECCCCCCHHHHHHH-HHHH
Confidence 33443 677999999999999986633 4443
No 418
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=88.42 E-value=0.32 Score=51.52 Aligned_cols=21 Identities=29% Similarity=0.352 Sum_probs=18.2
Q ss_pred HHhCCeEEEEecCCCCccchH
Q 002552 294 VAENQVLVVSGETGCGKTTQL 314 (908)
Q Consensus 294 i~~~~~vii~a~TGSGKTt~~ 314 (908)
+..|+.++|.|+.|+||||.+
T Consensus 13 i~~Gqr~~I~G~~G~GKTTLl 33 (249)
T cd01128 13 IGKGQRGLIVAPPKAGKTTLL 33 (249)
T ss_pred cCCCCEEEEECCCCCCHHHHH
Confidence 457899999999999999744
No 419
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=88.41 E-value=1.5 Score=51.76 Aligned_cols=88 Identities=16% Similarity=0.168 Sum_probs=63.3
Q ss_pred HHHHHHHHHh-ccCCCc-EEEecCCHHHHHHHHHHHHhcccCCCCCceEEEeccCCCChHhHHhhhCCCCCCCcEEEEec
Q 002552 541 VESTIEYICR-HEGDGA-ILVFLTGWNDISKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLAT 618 (908)
Q Consensus 541 i~~~l~~i~~-~~~~g~-iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lH~~l~~~er~~v~~~f~~g~~kIlvaT 618 (908)
...++..+.. ...... +||++||++-+..+++.+...... ..++.++.++|+++...|...++. | ..|||||
T Consensus 84 ~lP~l~~l~~~~~~~~~~aLil~PTRELA~Qi~~~~~~~~~~--~~~~~~~~i~GG~~~~~q~~~l~~---~-~~ivVaT 157 (513)
T COG0513 84 LLPLLQKILKSVERKYVSALILAPTRELAVQIAEELRKLGKN--LGGLRVAVVYGGVSIRKQIEALKR---G-VDIVVAT 157 (513)
T ss_pred HHHHHHHHhcccccCCCceEEECCCHHHHHHHHHHHHHHHhh--cCCccEEEEECCCCHHHHHHHHhc---C-CCEEEEC
Confidence 3445555542 122222 999999999999998887753221 116779999999999988877765 5 8999999
Q ss_pred c-----ccccc-cCCCCeEEEE
Q 002552 619 N-----IAESS-ITIDDVVYVV 634 (908)
Q Consensus 619 ~-----iae~G-idIp~v~~VI 634 (908)
+ ..+++ +++..|.++|
T Consensus 158 PGRllD~i~~~~l~l~~v~~lV 179 (513)
T COG0513 158 PGRLLDLIKRGKLDLSGVETLV 179 (513)
T ss_pred ccHHHHHHHcCCcchhhcCEEE
Confidence 8 45555 8888898887
No 420
>KOG2036 consensus Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=88.39 E-value=2.8 Score=49.19 Aligned_cols=131 Identities=23% Similarity=0.294 Sum_probs=76.5
Q ss_pred HHHHHHHh---CCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCC-CCCEEeE
Q 002552 289 EFLKAVAE---NQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGEN-LGETVGY 364 (908)
Q Consensus 289 ~~i~~i~~---~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~~~~~~-~g~~vg~ 364 (908)
.++++|.. +-.+-++|.-|-||+.++-+.|...... ....|.|+.|.-+-...+++-+.+=+..- .-..+.|
T Consensus 264 ~f~dai~eK~lr~~vsLtA~RGRGKSAALGlsiA~AVa~----GysnIyvtSPspeNlkTlFeFv~kGfDaL~Yqeh~Dy 339 (1011)
T KOG2036|consen 264 TFFDAIVEKTLRSTVSLTASRGRGKSAALGLSIAGAVAF----GYSNIYVTSPSPENLKTLFEFVFKGFDALEYQEHVDY 339 (1011)
T ss_pred HHHHHHHHhhhcceEEEEecCCCCchhhhhHHHHHHHhc----CcceEEEcCCChHHHHHHHHHHHcchhhhcchhhcch
Confidence 34455543 3467789999999998888877765421 14579999999998888888776532210 0011111
Q ss_pred Eee-------------ccccCCCCCcEEEEchHHHHHHHhcCC-CCCcceEEEEechhccchhhHHHHHHHHHHCccCCC
Q 002552 365 QIR-------------LESKRSAQTRLLFCTTGVLLRQLVEDP-DLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPD 430 (908)
Q Consensus 365 ~~~-------------~~~~~~~~~~Iiv~T~g~Ll~~l~~~~-~l~~~~~iIiDEaHeR~~~~d~ll~~lk~~~~~~~~ 430 (908)
.+- .+-.....--|-|..|. +. .|....+||||||-- +=+.++|.++-
T Consensus 340 ~iI~s~np~fkkaivRInifr~hrQtIQYi~P~--------D~~kl~q~eLlVIDEAAA------IPLplvk~Lig---- 401 (1011)
T KOG2036|consen 340 DIIQSTNPDFKKAIVRINIFREHRQTIQYISPH--------DHQKLGQAELLVIDEAAA------IPLPLVKKLIG---- 401 (1011)
T ss_pred hhhhhcChhhhhhEEEEEEeccccceeEeeccc--------hhhhccCCcEEEechhhc------CCHHHHHHhhc----
Confidence 110 00000001123333331 11 467889999999973 22345555553
Q ss_pred CcEEEecccCC
Q 002552 431 LRLILMSATIN 441 (908)
Q Consensus 431 ~qiIlmSAT~~ 441 (908)
+-+|.|+.|++
T Consensus 402 PylVfmaSTin 412 (1011)
T KOG2036|consen 402 PYLVFMASTIN 412 (1011)
T ss_pred ceeEEEeeccc
Confidence 46899999985
No 421
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=88.35 E-value=4.3 Score=42.41 Aligned_cols=59 Identities=22% Similarity=0.326 Sum_probs=32.6
Q ss_pred HHHHHhCC-eEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHh
Q 002552 291 LKAVAENQ-VLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSER 354 (908)
Q Consensus 291 i~~i~~~~-~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~~~ 354 (908)
-..+..++ .+.++|+-|||||+..- .+++.. ..+..+.|++-.||-.. ..+.+++...+
T Consensus 44 ~~~i~d~qg~~~vtGevGsGKTv~~R-al~~s~---~~d~~~~v~i~~~~~s~-~~~~~ai~~~l 103 (269)
T COG3267 44 HAAIADGQGILAVTGEVGSGKTVLRR-ALLASL---NEDQVAVVVIDKPTLSD-ATLLEAIVADL 103 (269)
T ss_pred HHHHhcCCceEEEEecCCCchhHHHH-HHHHhc---CCCceEEEEecCcchhH-HHHHHHHHHHh
Confidence 34456677 99999999999997655 333332 12223333444444333 33444444443
No 422
>PF12846 AAA_10: AAA-like domain
Probab=88.34 E-value=0.5 Score=51.40 Aligned_cols=43 Identities=23% Similarity=0.342 Sum_probs=30.5
Q ss_pred CCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHH
Q 002552 297 NQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAI 344 (908)
Q Consensus 297 ~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~ 344 (908)
|.+++|+|+||||||+.+-..+.+. +.. +..++++=|..+...
T Consensus 1 n~h~~i~G~tGsGKT~~~~~l~~~~-~~~----g~~~~i~D~~g~~~~ 43 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLKNLLEQL-IRR----GPRVVIFDPKGDYSP 43 (304)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHH-HHc----CCCEEEEcCCchHHH
Confidence 5689999999999998777554443 332 356788777766544
No 423
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=88.28 E-value=0.49 Score=49.85 Aligned_cols=50 Identities=24% Similarity=0.300 Sum_probs=34.9
Q ss_pred hCCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHH
Q 002552 296 ENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVS 351 (908)
Q Consensus 296 ~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~ 351 (908)
.+..++|.|++|||||+...+++.+.+. .+ -+++++. +.+-..++.++++
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~---~g--e~~lyvs-~ee~~~~i~~~~~ 69 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQ---MG--EPGIYVA-LEEHPVQVRRNMA 69 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHH---cC--CcEEEEE-eeCCHHHHHHHHH
Confidence 5789999999999999999999887652 22 2344433 3445556666654
No 424
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=88.24 E-value=0.46 Score=48.57 Aligned_cols=37 Identities=24% Similarity=0.434 Sum_probs=22.9
Q ss_pred eEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEccc
Q 002552 299 VLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPR 339 (908)
Q Consensus 299 ~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~ 339 (908)
.++|+|||||||||.+-.. +..... ....+|+++.-.
T Consensus 3 lilI~GptGSGKTTll~~l-l~~~~~---~~~~~i~t~e~~ 39 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAM-IDYINK---NKTHHILTIEDP 39 (198)
T ss_pred EEEEECCCCCCHHHHHHHH-HHHhhh---cCCcEEEEEcCC
Confidence 5799999999999876443 333321 123456665543
No 425
>PRK05580 primosome assembly protein PriA; Validated
Probab=88.18 E-value=0.67 Score=56.65 Aligned_cols=74 Identities=12% Similarity=0.196 Sum_probs=60.6
Q ss_pred CCcEEEecCCHHHHHHHHHHHHhcccCCCCCceEEEeccCCCChHhHHhhhCCCCCCCcEEEEeccccccccCCCCeEEE
Q 002552 554 DGAILVFLTGWNDISKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVYV 633 (908)
Q Consensus 554 ~g~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lH~~l~~~er~~v~~~f~~g~~kIlvaT~iae~GidIp~v~~V 633 (908)
+.++||.+|++..+..+.+.+.+. .+..+..+||+++..+|.+++.....|..+|||+|.-+-. +.+.++.+|
T Consensus 190 g~~vLvLvPt~~L~~Q~~~~l~~~------fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-~p~~~l~li 262 (679)
T PRK05580 190 GKQALVLVPEIALTPQMLARFRAR------FGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-LPFKNLGLI 262 (679)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHH------hCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-ccccCCCEE
Confidence 568999999999999999988763 2346888999999999999888888999999999974432 556777776
Q ss_pred E
Q 002552 634 V 634 (908)
Q Consensus 634 I 634 (908)
|
T Consensus 263 V 263 (679)
T PRK05580 263 I 263 (679)
T ss_pred E
Confidence 6
No 426
>smart00393 R3H Putative single-stranded nucleic acids-binding domain.
Probab=87.88 E-value=1.5 Score=37.36 Aligned_cols=47 Identities=9% Similarity=0.292 Sum_probs=40.4
Q ss_pred hHHHHHhhccccceeeccccCCchhHHHHHHHHHhcCcceeeecCCce
Q 002552 122 WGKLEQMKRGEEQEMIIKRKFSRADQQTLADMAHQLGLHFHAYNKGKA 169 (908)
Q Consensus 122 r~~~~~~~~~~~~e~~~~~~~s~~e~~~i~~~a~~~gl~~~~~~~g~~ 169 (908)
...+.++....+..+.+++ ++..++..+|++|...|+.+.++|.+.+
T Consensus 25 ~~~~~~~v~~~~~~~~~~p-m~~~~R~~iH~~a~~~~l~s~S~g~g~~ 71 (79)
T smart00393 25 ELEIARFVKSTKESVELPP-MNSYERKIVHELAEKYGLESESFGEGPK 71 (79)
T ss_pred HHHHHHHHhccCCeEEcCC-CCHHHHHHHHHHHHHcCCEEEEEcCCCC
Confidence 4455567777888999987 9999999999999999999999987766
No 427
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=87.78 E-value=1.1 Score=44.95 Aligned_cols=40 Identities=25% Similarity=0.256 Sum_probs=29.9
Q ss_pred hCCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccH
Q 002552 296 ENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRR 340 (908)
Q Consensus 296 ~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r 340 (908)
....++|.+++|-|||+++.-..+..+ +.+.+|+++|=.+
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~-----g~G~~V~ivQFlK 60 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAV-----GHGKKVGVVQFIK 60 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHH-----HCCCeEEEEEEec
Confidence 556899999999999998877776654 2245788877544
No 428
>PRK09354 recA recombinase A; Provisional
Probab=87.77 E-value=1.5 Score=48.65 Aligned_cols=27 Identities=26% Similarity=0.368 Sum_probs=23.4
Q ss_pred hCCeEEEEecCCCCccchHHHHHHHHH
Q 002552 296 ENQVLVVSGETGCGKTTQLPQFILEEE 322 (908)
Q Consensus 296 ~~~~vii~a~TGSGKTt~~~~~il~~~ 322 (908)
.++.+.|.||+|||||+...+++.+..
T Consensus 59 ~G~IteI~G~~GsGKTtLal~~~~~~~ 85 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTLALHAIAEAQ 85 (349)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 478999999999999998888887654
No 429
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=87.54 E-value=0.75 Score=51.64 Aligned_cols=44 Identities=23% Similarity=0.205 Sum_probs=27.1
Q ss_pred hCCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHH
Q 002552 296 ENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRIS 342 (908)
Q Consensus 296 ~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~l 342 (908)
.+..++|+|||||||||.+- .+++.+... ....+|+.+.-..|.
T Consensus 148 ~~GlilI~G~TGSGKTT~l~-al~~~i~~~--~~~~~IvtiEdp~E~ 191 (372)
T TIGR02525 148 AAGLGLICGETGSGKSTLAA-SIYQHCGET--YPDRKIVTYEDPIEY 191 (372)
T ss_pred cCCEEEEECCCCCCHHHHHH-HHHHHHHhc--CCCceEEEEecCchh
Confidence 45678999999999998663 344443221 123467766544443
No 430
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=87.52 E-value=1.4 Score=45.01 Aligned_cols=13 Identities=0% Similarity=0.217 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHhC
Q 002552 285 KMKAEFLKAVAEN 297 (908)
Q Consensus 285 ~~Q~~~i~~i~~~ 297 (908)
|+|.++...|+.+
T Consensus 136 PfrSKLAA~I~gG 148 (317)
T KOG1596|consen 136 PFRSKLAAGILGG 148 (317)
T ss_pred hHHHHHHHHhhcC
Confidence 4676666666655
No 431
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=87.41 E-value=0.17 Score=50.73 Aligned_cols=58 Identities=12% Similarity=-0.018 Sum_probs=33.3
Q ss_pred EchHHHHHHHhcCCCCCcceEEEEechhccchhhHHHHHHHHHHCccCCC-CcEEEeccc
Q 002552 381 CTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPD-LRLILMSAT 439 (908)
Q Consensus 381 ~T~g~Ll~~l~~~~~l~~~~~iIiDEaHeR~~~~d~ll~~lk~~~~~~~~-~qiIlmSAT 439 (908)
.+.|...+.......+.+-.++|+||-- -++|.+....+.+.+.....+ -+.++++..
T Consensus 101 lS~G~~qr~~la~al~~~p~llilDEP~-~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH 159 (178)
T cd03229 101 LSGGQQQRVALARALAMDPDVLLLDEPT-SALDPITRREVRALLKSLQAQLGITVVLVTH 159 (178)
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEeCCc-ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 5566544443333345677899999998 667777655555544433222 244555443
No 432
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=87.28 E-value=1.7 Score=49.43 Aligned_cols=21 Identities=24% Similarity=0.328 Sum_probs=16.4
Q ss_pred CCeEEEEecCCCCccchHHHH
Q 002552 297 NQVLVVSGETGCGKTTQLPQF 317 (908)
Q Consensus 297 ~~~vii~a~TGSGKTt~~~~~ 317 (908)
.+.+++.||+|||||+.+-..
T Consensus 165 p~gvLL~GppGtGKT~lAkai 185 (389)
T PRK03992 165 PKGVLLYGPPGTGKTLLAKAV 185 (389)
T ss_pred CCceEEECCCCCChHHHHHHH
Confidence 457999999999999654433
No 433
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=87.13 E-value=1.2 Score=44.06 Aligned_cols=37 Identities=24% Similarity=0.242 Sum_probs=26.1
Q ss_pred eEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccH
Q 002552 299 VLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRR 340 (908)
Q Consensus 299 ~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r 340 (908)
-+.|..++|-||||++.-..+..+ +.+.+|+++|=.+
T Consensus 7 li~v~~g~GkGKtt~a~g~a~ra~-----~~g~~v~ivQFlK 43 (173)
T TIGR00708 7 IIIVHTGNGKGKTTAAFGMALRAL-----GHGKKVGVIQFIK 43 (173)
T ss_pred EEEEECCCCCChHHHHHHHHHHHH-----HCCCeEEEEEEec
Confidence 466777799999998887777654 2245777776443
No 434
>PF05894 Podovirus_Gp16: Podovirus DNA encapsidation protein (Gp16); InterPro: IPR008784 This family consists of several DNA encapsidation protein (Gp16) sequences from the phi-29-like viruses. Gene product 16 catalyses the in vivo and in vitro genome-encapsidation reaction [].; GO: 0005524 ATP binding, 0019069 viral capsid assembly
Probab=87.09 E-value=6.5 Score=42.30 Aligned_cols=133 Identities=17% Similarity=0.177 Sum_probs=75.9
Q ss_pred hCCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHH----HHHHHHHHHHHHhCCCCCCEEeEEeecccc
Q 002552 296 ENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRI----SAISVAARVSSERGENLGETVGYQIRLESK 371 (908)
Q Consensus 296 ~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~----la~qi~~rv~~~~~~~~g~~vg~~~~~~~~ 371 (908)
++.--+|.|.-|-|||.++--.++++.+..+ .+.|++--... ++..-...+++++...- +.+.....
T Consensus 16 ~~~~~~viG~RgiGKtya~k~~~i~df~~~G----~qfiyLRr~k~E~~~~~n~~f~dv~~~f~~~~-----F~vk~~k~ 86 (333)
T PF05894_consen 16 DRILNFVIGARGIGKTYALKKKLIKDFIEYG----EQFIYLRRYKTELDKMKNKFFNDVQQEFPNNE-----FEVKGNKI 86 (333)
T ss_pred cceEEEEEecccccchhHHHHHHHHHHHhcC----CEEEEEEecchHHHHHhhHHHHHHHHhCCCCc-----EEEEccEE
Confidence 4444566799999999999988888887642 35555432222 23333344544432211 11111111
Q ss_pred CCCCCcEEEEchHHHHHHHhcCCCCCcceEEEEechh-ccch------hhHHHHHHHHHHCccCCCCcEEEecc
Q 002552 372 RSAQTRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIH-ERGM------NEDFLLIILRDLLPRRPDLRLILMSA 438 (908)
Q Consensus 372 ~~~~~~Iiv~T~g~Ll~~l~~~~~l~~~~~iIiDEaH-eR~~------~~d~ll~~lk~~~~~~~~~qiIlmSA 438 (908)
.-.+-.|.+.+|=.-...+ .+....++.+||+||+- |++- ..+-++.++..+-+.+.+++++++|-
T Consensus 87 ~idgk~~g~~~~Ls~~q~~-Ks~~Yp~V~~IvfDEfi~ek~~~~y~~nEv~~Lln~i~TV~R~rd~i~vicl~N 159 (333)
T PF05894_consen 87 YIDGKLIGYFIPLSGWQKL-KSSSYPNVYTIVFDEFIIEKSNWRYIPNEVKALLNFIDTVFRFRDRIRVICLSN 159 (333)
T ss_pred EECCeEEEEEEecchhhhc-ccCCCCcEEEEEEEEEEecCcccCCCchHHHHHHHHHHHHhhcccceEEEEEec
Confidence 1113345555542222222 23478899999999997 3321 13345666666777888999999985
No 435
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=87.07 E-value=0.81 Score=50.79 Aligned_cols=20 Identities=30% Similarity=0.399 Sum_probs=16.4
Q ss_pred CeEEEEecCCCCccchHHHH
Q 002552 298 QVLVVSGETGCGKTTQLPQF 317 (908)
Q Consensus 298 ~~vii~a~TGSGKTt~~~~~ 317 (908)
+.+++.||+|+|||+.+-.+
T Consensus 52 ~~~ll~GppG~GKT~la~~i 71 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLANII 71 (328)
T ss_pred CcEEEECCCCccHHHHHHHH
Confidence 57999999999999765543
No 436
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=87.03 E-value=0.8 Score=51.17 Aligned_cols=42 Identities=26% Similarity=0.395 Sum_probs=26.7
Q ss_pred hCCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHH
Q 002552 296 ENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRI 341 (908)
Q Consensus 296 ~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~ 341 (908)
.+..++|+|||||||||.+-. ++..+. .....+|+.+.-..+
T Consensus 121 ~~g~ili~G~tGSGKTT~l~a-l~~~i~---~~~~~~i~tiEdp~E 162 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTLAS-MIDYIN---KNAAGHIITIEDPIE 162 (343)
T ss_pred cCcEEEEECCCCCCHHHHHHH-HHHhhC---cCCCCEEEEEcCChh
Confidence 467899999999999987643 333331 112346766654444
No 437
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=86.86 E-value=2.3 Score=50.96 Aligned_cols=122 Identities=13% Similarity=0.032 Sum_probs=79.4
Q ss_pred cCCCcEEEecCCHHHHHHHHHHHHhcccCCCCCceEEEeccCCCChHhHHhhhCCCCC----CCcEEEEeccccccccCC
Q 002552 552 EGDGAILVFLTGWNDISKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPP----NKRKIVLATNIAESSITI 627 (908)
Q Consensus 552 ~~~g~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lH~~l~~~er~~v~~~f~~----g~~kIlvaT~iae~GidI 627 (908)
...|.+||.+++++.++.+++.|... ..+.++ +.|..+. +...++.|+. |...||++|+-+-+|||+
T Consensus 468 ~~~G~~lvLfTS~~~~~~~~~~l~~~------l~~~~l-~qg~~~~--~~~l~~~f~~~~~~~~~~vL~gt~sfweGvDv 538 (636)
T TIGR03117 468 KAQGGTLVLTTAFSHISAIGQLVELG------IPAEIV-IQSEKNR--LASAEQQFLALYANGIQPVLIAAGGAWTGIDL 538 (636)
T ss_pred HcCCCEEEEechHHHHHHHHHHHHhh------cCCCEE-EeCCCcc--HHHHHHHHHHhhcCCCCcEEEeCCcccccccc
Confidence 34678999999999999999999752 223343 4565432 3345556665 578999999999999999
Q ss_pred ----------CCeEEEEeCCCccceeeccc--------cCccccccccccHhhHHHhccccCCC--C--CcEEEEecC
Q 002552 628 ----------DDVVYVVDCGKAKETSYDAL--------NKLACLLPSWISKASAHQRRGRAGRV--Q--PGVCYKLYP 683 (908)
Q Consensus 628 ----------p~v~~VId~g~~k~~~yd~~--------~~~~~l~~~~iS~~~~~QR~GRaGR~--~--~G~~~~l~~ 683 (908)
+.++.||-.-+|-.. -||. .+.......+-..-...|-+||-=|. - .|....|=+
T Consensus 539 ~~~~~~p~~G~~Ls~ViI~kLPF~~-~dp~a~~~~~~~~g~~~f~~~p~a~i~lkQg~GRLIR~~~D~~~G~i~ilD~ 615 (636)
T TIGR03117 539 THKPVSPDKDNLLTDLIITCAPFGL-NRSLSMLKRIRKTSVRPWEIINESLMMLRQGLGRLVRHPDMPQNRRIHMLDG 615 (636)
T ss_pred CCccCCCCCCCcccEEEEEeCCCCc-CChHHHHHHHHhcCCChHhhhHHHHHHHHHhcCceeecCCCcCceEEEEEeC
Confidence 338889887887442 2332 11111122233344677888888887 3 465554433
No 438
>PF01424 R3H: R3H domain; InterPro: IPR001374 The R3H motif: a domain that binds single-stranded nucleic acids. The most prominent feature of the R3H motif is the presence of an invariant arginine residue and a highly conserved histidine residue that are separated by three residues. The motif also displays a conserved pattern of hydrophobic residues, prolines and glycines. The R3H motif is present in proteins from a diverse range of organisms that includes Eubacteria, green plants, fungi and various groups of metazoans. Intriguingly, it has not yet been identified in Archaea and Escherichia coli. The sequences that contain the R3H domain, many of which are hypothetical proteins predicted from genome sequencing projects, can be grouped into eight families on the basis of similarities outside the R3H region. Three of the families contain ATPase domains either upstream (families II and VII) or downstream of the R3H domain (family VIII). The N-terminal part of members of family VII contains an SF1 helicase domain5. The C-terminal part of family VIII contains an SF2 DEAH helicase domain5. The ATPase domain in the members of family II is similar to the stage-III sporulation protein AA (S3AA_BACSU), the proteasome ATPase, bacterial transcription-termination factor r and the mitochondrial F1-ATPase b subunit (the F5 helicase family5). Family VI contains Cys-rich repeats6, as well as a ring-type zinc finger upstream of the R3H domain. JAG bacterial proteins (family I) contain a KH domain N-terminal to the R3H domain. The functions of other domains in R3H proteins support the notion that the R3H domain might be involved in interactions with single-stranded nucleic acids [].; GO: 0003676 nucleic acid binding; PDB: 1WHR_A 1MSZ_A 1UG8_A 3GKU_B 2CPM_A.
Probab=86.83 E-value=1.9 Score=34.94 Aligned_cols=51 Identities=18% Similarity=0.271 Sum_probs=35.8
Q ss_pred HHHHHhhccccceeeccccCCchhHHHHHHHHHhcCcceeeecCCce--EEEee
Q 002552 123 GKLEQMKRGEEQEMIIKRKFSRADQQTLADMAHQLGLHFHAYNKGKA--LAVSK 174 (908)
Q Consensus 123 ~~~~~~~~~~~~e~~~~~~~s~~e~~~i~~~a~~~gl~~~~~~~g~~--~~~sk 174 (908)
+.+.++-..+++.+.+++ .+..++..+|.+|...|+.+.+.|.+.. +++.+
T Consensus 10 ~~~~~~~~~~~~~~~f~p-m~~~~R~~iH~~a~~~gL~s~S~g~~~~R~vvv~k 62 (63)
T PF01424_consen 10 EKLIEFFLSSGESLEFPP-MNSFERKLIHELAEYYGLKSKSEGEGPNRRVVVSK 62 (63)
T ss_dssp HHHHHHHHHCSSEEEEEC---SHHHHHHHHHHHHCTEEEEEESSSSSSEEEEEE
T ss_pred HHHHHHHHcCCCEEEECC-CCHHHHHHHHHHHHHCCCEEEEecCCCCeEEEEEe
Confidence 333444433334888886 9999999999999999999999886665 55443
No 439
>PHA00149 DNA encapsidation protein
Probab=86.74 E-value=6.7 Score=41.55 Aligned_cols=133 Identities=16% Similarity=0.173 Sum_probs=76.6
Q ss_pred EEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccH-HHHHHHHHHHHHHhCCCCCCEEeEEeeccccCCCCCcE
Q 002552 300 LVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRR-ISAISVAARVSSERGENLGETVGYQIRLESKRSAQTRL 378 (908)
Q Consensus 300 vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r-~la~qi~~rv~~~~~~~~g~~vg~~~~~~~~~~~~~~I 378 (908)
-+|.|.-|-|||.++--.++...+..+ -+.|++--.. |+.. ..+-++.+....+... +.+......-.+-.|
T Consensus 20 ~fviG~RgiGKTya~k~~~~k~~i~kg----eqfiYLRr~k~El~~-k~~Ff~d~~~~~~~~~--F~Vkg~ki~~~~k~i 92 (331)
T PHA00149 20 NFVIGARGIGKTYALKKYLIKRFIKKG----EQFIYLRRYKSELKK-KSKFFADIAQEFPNTE--FEVKGRKIYIKGKLI 92 (331)
T ss_pred EEEEeccccchhhHHHHHHHHHHHhcC----cEEEEEEecchhhhh-hhhhhHHHHHhCCCCc--eEEEccEEEEcCeEE
Confidence 356699999999999888888877542 3555543222 2222 3333444433222111 111111111123455
Q ss_pred EEEchHHHHHHHhcCCCCCcceEEEEechhc-c------chhhHHHHHHHHHHCccCCCCcEEEecccC
Q 002552 379 LFCTTGVLLRQLVEDPDLSCVSHLLVDEIHE-R------GMNEDFLLIILRDLLPRRPDLRLILMSATI 440 (908)
Q Consensus 379 iv~T~g~Ll~~l~~~~~l~~~~~iIiDEaHe-R------~~~~d~ll~~lk~~~~~~~~~qiIlmSAT~ 440 (908)
.+.-|=.-...+. +....++.+|++||+-. + .-+.+.++.++..+.+.+.+++++++|-..
T Consensus 93 gy~i~LS~~q~~K-s~~Yp~V~~I~fDEfi~dk~n~~YlpNE~~allnli~tV~R~Re~vr~~~lsNa~ 160 (331)
T PHA00149 93 GYAIPLSTWQALK-SSAYPNVSTIFFDEFIREKDNKRYLPNEVDALLNLIDTVFRARERVRCICLSNAV 160 (331)
T ss_pred EEEEehhhHHhhc-ccCCCceEEEEeeeeeecCcccccCCchHHHHHHHHHHHHHhhcCeEEEEEcCcc
Confidence 5665533333332 33678999999999983 1 123445677777777888889999998653
No 440
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=86.70 E-value=4.3 Score=50.32 Aligned_cols=21 Identities=29% Similarity=0.426 Sum_probs=16.8
Q ss_pred CCeEEEEecCCCCccchHHHH
Q 002552 297 NQVLVVSGETGCGKTTQLPQF 317 (908)
Q Consensus 297 ~~~vii~a~TGSGKTt~~~~~ 317 (908)
..++|+.||+|+|||+.+-..
T Consensus 203 ~~n~lL~G~pG~GKT~l~~~l 223 (731)
T TIGR02639 203 KNNPLLVGEPGVGKTAIAEGL 223 (731)
T ss_pred CCceEEECCCCCCHHHHHHHH
Confidence 458999999999999765433
No 441
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=86.56 E-value=0.85 Score=50.70 Aligned_cols=101 Identities=27% Similarity=0.276 Sum_probs=56.0
Q ss_pred HHHHHHHH-HHhCCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCCEEeE
Q 002552 286 MKAEFLKA-VAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLGETVGY 364 (908)
Q Consensus 286 ~Q~~~i~~-i~~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~~~~~~~g~~vg~ 364 (908)
.+.+++.. +..+.+++|+|+|||||||.+-.. +..+ .+..+++++.-+.|+... ....+.+
T Consensus 166 ~~~~~L~~~v~~~~~ili~G~tGsGKTTll~al-~~~i-----~~~~riv~iEd~~El~~~------------~~~~~~l 227 (340)
T TIGR03819 166 GVARLLRAIVAARLAFLISGGTGSGKTTLLSAL-LALV-----APDERIVLVEDAAELRPD------------HPHVVRL 227 (340)
T ss_pred HHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHH-HccC-----CCCCcEEEECCcceecCC------------CCCeeeE
Confidence 44455554 456779999999999999866433 2222 124567887777776310 1122333
Q ss_pred EeeccccCCCCCcEEEEchHHHHHHHhcCCCCCcceEEEEechhccchhh
Q 002552 365 QIRLESKRSAQTRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNE 414 (908)
Q Consensus 365 ~~~~~~~~~~~~~Iiv~T~g~Ll~~l~~~~~l~~~~~iIiDEaHeR~~~~ 414 (908)
..+..+. .+. --.|...|++...+ .+-+.|||.|+ |+...
T Consensus 228 ~~r~~~~--~g~--~~~t~~~ll~~aLR----~~PD~IivGEi--Rg~Ea 267 (340)
T TIGR03819 228 EARPANV--EGA--GAVTLTDLVRQALR----MRPDRIVVGEV--RGAEV 267 (340)
T ss_pred Eeccccc--cCc--CccCHHHHHHHHhc----cCCCeEEEeCc--CcHHH
Confidence 3222111 010 12355556654433 35678999999 66543
No 442
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=86.54 E-value=0.94 Score=53.30 Aligned_cols=74 Identities=12% Similarity=0.201 Sum_probs=60.0
Q ss_pred CCcEEEecCCHHHHHHHHHHHHhcccCCCCCceEEEeccCCCChHhHHhhhCCCCCCCcEEEEeccccccccCCCCeEEE
Q 002552 554 DGAILVFLTGWNDISKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVYV 633 (908)
Q Consensus 554 ~g~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lH~~l~~~er~~v~~~f~~g~~kIlvaT~iae~GidIp~v~~V 633 (908)
++++||.+|+..-+..+++.|++. .+..+..+||+++..+|.+++....+|..+|||+|..+-- +.++++.+|
T Consensus 25 g~~vLvlvP~i~L~~Q~~~~l~~~------f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsalf-~p~~~l~lI 97 (505)
T TIGR00595 25 GKSVLVLVPEIALTPQMIQRFKYR------FGSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSALF-LPFKNLGLI 97 (505)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHH------hCCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHHc-CcccCCCEE
Confidence 568999999999999999888763 1345778999999999999888888999999999975442 456777777
Q ss_pred E
Q 002552 634 V 634 (908)
Q Consensus 634 I 634 (908)
|
T Consensus 98 I 98 (505)
T TIGR00595 98 I 98 (505)
T ss_pred E
Confidence 6
No 443
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.45 E-value=5.1 Score=44.14 Aligned_cols=134 Identities=16% Similarity=0.271 Sum_probs=79.5
Q ss_pred CeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCCEEeEEeeccccCCCCCc
Q 002552 298 QVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLGETVGYQIRLESKRSAQTR 377 (908)
Q Consensus 298 ~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~~~~~~~g~~vg~~~~~~~~~~~~~~ 377 (908)
.+++++|=-|+||||....+.... +.+|-.+-.+|----|+.|...-+.-+...+.+. +| ... ..-.
T Consensus 102 sVimfVGLqG~GKTTtc~KlA~y~---kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~---yg---syt----e~dp 168 (483)
T KOG0780|consen 102 SVIMFVGLQGSGKTTTCTKLAYYY---KKKGYKVALVCADTFRAGAFDQLKQNATKARVPF---YG---SYT----EADP 168 (483)
T ss_pred cEEEEEeccCCCcceeHHHHHHHH---HhcCCceeEEeecccccchHHHHHHHhHhhCCee---Ee---ccc----ccch
Confidence 589999999999999888776543 2355566677777778877655444433333221 11 100 0001
Q ss_pred EEEEchHHHHHHHhcCCCCCcceEEEEechhccchhhHHHHHHHHHHCccCCCCcEEEecccCC--hHHHHhhhC
Q 002552 378 LLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILMSATIN--ADLFSKYFG 450 (908)
Q Consensus 378 Iiv~T~g~Ll~~l~~~~~l~~~~~iIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiIlmSAT~~--~~~~~~~f~ 450 (908)
+.|+..| ++.. .=+++++||+|-.-....+..+...++.......|+.-+.+|-|++. ++..+.-|.
T Consensus 169 v~ia~eg--v~~f----Kke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aFk 237 (483)
T KOG0780|consen 169 VKIASEG--VDRF----KKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAFK 237 (483)
T ss_pred HHHHHHH--HHHH----HhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHHH
Confidence 1122222 1111 23689999999988434555555555555555788989999999984 334444443
No 444
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=86.43 E-value=1.4 Score=43.16 Aligned_cols=35 Identities=23% Similarity=0.079 Sum_probs=23.8
Q ss_pred EEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEccc
Q 002552 300 LVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPR 339 (908)
Q Consensus 300 vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~ 339 (908)
+.|-.++|.|||+++.-..+..+- .+.+|+++|=.
T Consensus 5 i~vy~g~G~Gkt~~a~g~~~ra~~-----~g~~v~~vQFl 39 (159)
T cd00561 5 IQVYTGNGKGKTTAALGLALRALG-----HGYRVGVVQFL 39 (159)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-----CCCeEEEEEEe
Confidence 556667799999988777666542 24577775543
No 445
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=86.01 E-value=1.9 Score=51.26 Aligned_cols=40 Identities=23% Similarity=0.289 Sum_probs=25.7
Q ss_pred CCcceEEEEechhccchhhHHHHHHHHHHCccCCCCcEEEe
Q 002552 396 LSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILM 436 (908)
Q Consensus 396 l~~~~~iIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiIlm 436 (908)
+++-.++|+||+- -.+|.+....+.+.+....++.-+|+.
T Consensus 486 l~~~~iliLDE~T-SaLD~~te~~I~~~l~~~~~~~TvIiI 525 (529)
T TIGR02868 486 LADAPILLLDEPT-EHLDAGTESELLEDLLAALSGKTVVVI 525 (529)
T ss_pred hcCCCEEEEeCCc-ccCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 4566789999987 557777666666666555444444443
No 446
>PRK13764 ATPase; Provisional
Probab=85.98 E-value=1.1 Score=53.43 Aligned_cols=43 Identities=19% Similarity=0.173 Sum_probs=27.0
Q ss_pred HhCCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHH
Q 002552 295 AENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRIS 342 (908)
Q Consensus 295 ~~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~l 342 (908)
..+++++|+|+|||||||.+ ..+++.+.. . ...|+.+.-.+++
T Consensus 255 ~~~~~ILIsG~TGSGKTTll-~AL~~~i~~--~--~riV~TiEDp~El 297 (602)
T PRK13764 255 ERAEGILIAGAPGAGKSTFA-QALAEFYAD--M--GKIVKTMESPRDL 297 (602)
T ss_pred hcCCEEEEECCCCCCHHHHH-HHHHHHHhh--C--CCEEEEECCCccc
Confidence 34778999999999999865 444444432 1 2234355544554
No 447
>PRK10436 hypothetical protein; Provisional
Probab=85.95 E-value=0.87 Score=52.69 Aligned_cols=33 Identities=24% Similarity=0.364 Sum_probs=22.9
Q ss_pred chHHHHHHHHHHH--hCCeEEEEecCCCCccchHH
Q 002552 283 AFKMKAEFLKAVA--ENQVLVVSGETGCGKTTQLP 315 (908)
Q Consensus 283 i~~~Q~~~i~~i~--~~~~vii~a~TGSGKTt~~~ 315 (908)
..+.+.+.+..+. .+..++|+|||||||||.+-
T Consensus 202 ~~~~~~~~l~~~~~~~~GliLvtGpTGSGKTTtL~ 236 (462)
T PRK10436 202 MTPAQLAQFRQALQQPQGLILVTGPTGSGKTVTLY 236 (462)
T ss_pred cCHHHHHHHHHHHHhcCCeEEEECCCCCChHHHHH
Confidence 3344555555443 45689999999999998663
No 448
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=85.95 E-value=6.2 Score=42.65 Aligned_cols=54 Identities=22% Similarity=0.161 Sum_probs=37.5
Q ss_pred HHHHHHhcCCCCCcceEEEEechhccchhhHHHHHHHHHHCccCCCCcEEEecccC
Q 002552 385 VLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILMSATI 440 (908)
Q Consensus 385 ~Ll~~l~~~~~l~~~~~iIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiIlmSAT~ 440 (908)
-+...+...+.-..++++|||+||. +..+..-.++|.+..-.++..+|+.|...
T Consensus 82 ~l~~~~~~~p~e~~~kv~ii~~ad~--mt~~AaNaLLK~LEEPp~~~~fiL~~~~~ 135 (290)
T PRK05917 82 AIKKQIWIHPYESPYKIYIIHEADR--MTLDAISAFLKVLEDPPQHGVIILTSAKP 135 (290)
T ss_pred HHHHHHhhCccCCCceEEEEechhh--cCHHHHHHHHHHhhcCCCCeEEEEEeCCh
Confidence 3555555556668899999999995 45556677788776655566666666553
No 449
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=85.94 E-value=0.51 Score=43.67 Aligned_cols=19 Identities=37% Similarity=0.730 Sum_probs=15.3
Q ss_pred eEEEEecCCCCccchHHHH
Q 002552 299 VLVVSGETGCGKTTQLPQF 317 (908)
Q Consensus 299 ~vii~a~TGSGKTt~~~~~ 317 (908)
+++|+|++||||||.+-..
T Consensus 1 vI~I~G~~gsGKST~a~~L 19 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKEL 19 (121)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHH
Confidence 4789999999999855443
No 450
>PRK04841 transcriptional regulator MalT; Provisional
Probab=85.76 E-value=2.4 Score=54.17 Aligned_cols=26 Identities=27% Similarity=0.493 Sum_probs=22.0
Q ss_pred HHhCCeEEEEecCCCCccchHHHHHH
Q 002552 294 VAENQVLVVSGETGCGKTTQLPQFIL 319 (908)
Q Consensus 294 i~~~~~vii~a~TGSGKTt~~~~~il 319 (908)
....+.++|+||.|.||||.+.+++.
T Consensus 29 ~~~~~~~~v~apaG~GKTtl~~~~~~ 54 (903)
T PRK04841 29 ANNYRLVLVTSPAGYGKTTLISQWAA 54 (903)
T ss_pred ccCCCeEEEECCCCCCHHHHHHHHHH
Confidence 34567999999999999999888773
No 451
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=85.67 E-value=0.86 Score=49.99 Aligned_cols=41 Identities=29% Similarity=0.442 Sum_probs=26.2
Q ss_pred hHHHHHHhhcCCCchHHHHHHHHHHHh-CCeEEEEecCCCCccc
Q 002552 270 SGKAMLSFREKLPAFKMKAEFLKAVAE-NQVLVVSGETGCGKTT 312 (908)
Q Consensus 270 ~~~~~~~~r~~lpi~~~Q~~~i~~i~~-~~~vii~a~TGSGKTt 312 (908)
+.+++++.--.||++-- +.+.-|+. =+-++..||+|+|||.
T Consensus 219 ~AK~lL~EAVvlPi~mP--e~F~GirrPWkgvLm~GPPGTGKTl 260 (491)
T KOG0738|consen 219 EAKKLLKEAVVLPIWMP--EFFKGIRRPWKGVLMVGPPGTGKTL 260 (491)
T ss_pred HHHHHHHHHHhhhhhhH--HHHhhcccccceeeeeCCCCCcHHH
Confidence 34456666666777532 23333332 2679999999999994
No 452
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=85.55 E-value=5.8 Score=50.05 Aligned_cols=59 Identities=22% Similarity=0.392 Sum_probs=32.8
Q ss_pred HHHHHHHhcCCCCCcceEEEEechhccchhhHHHHHHHHHHCccC--------CCC--cEEEecccCChHHHHhh
Q 002552 384 GVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRR--------PDL--RLILMSATINADLFSKY 448 (908)
Q Consensus 384 g~Ll~~l~~~~~l~~~~~iIiDEaHeR~~~~d~ll~~lk~~~~~~--------~~~--qiIlmSAT~~~~~~~~~ 448 (908)
|.|...+... .+++|+|||++. ...++...++..+-.-+ -+. -+|+||..+..+.+.+.
T Consensus 657 g~l~~~v~~~----p~~vlllDeiek--a~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~g~~~~~~~ 725 (852)
T TIGR03346 657 GQLTEAVRRK----PYSVVLFDEVEK--AHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGSQFIQEL 725 (852)
T ss_pred cHHHHHHHcC----CCcEEEEecccc--CCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeCCcchHhHhhh
Confidence 3455555443 357999999995 44555544444432110 122 35667777766655443
No 453
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=85.45 E-value=6.5 Score=48.55 Aligned_cols=145 Identities=21% Similarity=0.274 Sum_probs=0.0
Q ss_pred hHHHHHHhhcCCCchHHHHHHHHHHH-----hCCeEEEEecCCCCccchHHHHHHHHHHhccCC--CCcEEEEEcccHHH
Q 002552 270 SGKAMLSFREKLPAFKMKAEFLKAVA-----ENQVLVVSGETGCGKTTQLPQFILEEELSSLRG--ADCNIICTQPRRIS 342 (908)
Q Consensus 270 ~~~~~~~~r~~lpi~~~Q~~~i~~i~-----~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~--~~~~ilv~~P~r~l 342 (908)
++.+..+.-+-=|+..-..++-..+. ...++++.||+|+|||+.+-.+........... ..+.++.+.+...+
T Consensus 175 ~l~~~a~~g~~~~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~~ll 254 (758)
T PRK11034 175 NLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLL 254 (758)
T ss_pred hHHHHHHcCCCCcCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHHHHh
Q ss_pred HH-----HHHHHHHHHhCCCCCCEEeEEeeccccCCCCCcEEEEchHHHHHHHhcCCCCCcceEEEEechhcc------c
Q 002552 343 AI-----SVAARVSSERGENLGETVGYQIRLESKRSAQTRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHER------G 411 (908)
Q Consensus 343 a~-----qi~~rv~~~~~~~~g~~vg~~~~~~~~~~~~~~Iiv~T~g~Ll~~l~~~~~l~~~~~iIiDEaHeR------~ 411 (908)
+- +..+++.. +++.+.. ..-.+|+|||+|.- .
T Consensus 255 aG~~~~Ge~e~rl~~---------------------------------l~~~l~~----~~~~ILfIDEIh~L~g~g~~~ 297 (758)
T PRK11034 255 AGTKYRGDFEKRFKA---------------------------------LLKQLEQ----DTNSILFIDEIHTIIGAGAAS 297 (758)
T ss_pred cccchhhhHHHHHHH---------------------------------HHHHHHh----cCCCEEEeccHHHHhccCCCC
Q ss_pred hhhHHHHHHHHHHCccCCCCcEEEecccCChHHHHhhhCCCCcc
Q 002552 412 MNEDFLLIILRDLLPRRPDLRLILMSATINADLFSKYFGNAPTV 455 (908)
Q Consensus 412 ~~~d~ll~~lk~~~~~~~~~qiIlmSAT~~~~~~~~~f~~~~~i 455 (908)
-...-...+++.++... ++.++.|| +.+.+.+||...+-+
T Consensus 298 ~g~~d~~nlLkp~L~~g---~i~vIgAT-t~~E~~~~~~~D~AL 337 (758)
T PRK11034 298 GGQVDAANLIKPLLSSG---KIRVIGST-TYQEFSNIFEKDRAL 337 (758)
T ss_pred CcHHHHHHHHHHHHhCC---CeEEEecC-ChHHHHHHhhccHHH
No 454
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=85.42 E-value=1.4 Score=44.20 Aligned_cols=43 Identities=9% Similarity=0.118 Sum_probs=26.3
Q ss_pred CCcceEEEEechhccchhhHHHHHHHHHHCccCC-CCcEEEeccc
Q 002552 396 LSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRP-DLRLILMSAT 439 (908)
Q Consensus 396 l~~~~~iIiDEaHeR~~~~d~ll~~lk~~~~~~~-~~qiIlmSAT 439 (908)
+.+-+++|+||.. .+++......+.+.+..... ...+|+.|--
T Consensus 114 ~~~p~llilDEp~-~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~ 157 (178)
T cd03239 114 IKPSPFYVLDEID-AALDPTNRRRVSDMIKEMAKHTSQFIVITLK 157 (178)
T ss_pred CCCCCEEEEECCC-CCCCHHHHHHHHHHHHHHHhCCCEEEEEECC
Confidence 3567899999999 67776655555444433222 3555655543
No 455
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=85.20 E-value=1.4 Score=50.31 Aligned_cols=56 Identities=18% Similarity=0.302 Sum_probs=48.5
Q ss_pred EEEecCCHHHHHHHHHHHHhcccCCCCCceEEEeccCCCChHhHHhhhCCCCCCCcEEEEecc
Q 002552 557 ILVFLTGWNDISKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATN 619 (908)
Q Consensus 557 iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lH~~l~~~er~~v~~~f~~g~~kIlvaT~ 619 (908)
.|||.||++-+..+.+.|..-. ...++.+..+.|||....|++++.. .-.|+|||+
T Consensus 266 ~LV~tPTRELa~QV~~Hl~ai~---~~t~i~v~si~GGLavqKQqRlL~~----~p~IVVATP 321 (731)
T KOG0347|consen 266 ALVVTPTRELAHQVKQHLKAIA---EKTQIRVASITGGLAVQKQQRLLNQ----RPDIVVATP 321 (731)
T ss_pred eEEecChHHHHHHHHHHHHHhc---cccCeEEEEeechhHHHHHHHHHhc----CCCEEEecc
Confidence 7999999999999999887532 2368999999999999999999976 457999998
No 456
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=85.15 E-value=1.9 Score=52.53 Aligned_cols=79 Identities=11% Similarity=0.171 Sum_probs=63.3
Q ss_pred CCCcEEEecCCHHHHHHHHHHHHhcccCCCCCceEEEeccCCCChHhHHhhhCCCCCCCcEEEEecccc-ccccCCCCeE
Q 002552 553 GDGAILVFLTGWNDISKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIA-ESSITIDDVV 631 (908)
Q Consensus 553 ~~g~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lH~~l~~~er~~v~~~f~~g~~kIlvaT~ia-e~GidIp~v~ 631 (908)
.+.+++|-+||+.-+...++.+.+.. . ..++.+..+||+++..+|+.+++...+|...|||+|... ...+.+.++.
T Consensus 283 ~g~qvlilaPT~~LA~Q~~~~~~~l~--~-~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~~~~~l~ 359 (630)
T TIGR00643 283 AGYQVALMAPTEILAEQHYNSLRNLL--A-PLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKVEFKRLA 359 (630)
T ss_pred cCCcEEEECCHHHHHHHHHHHHHHHh--c-ccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhccccccccc
Confidence 35689999999999998888776521 1 136789999999999999999999999999999999743 3456677777
Q ss_pred EEE
Q 002552 632 YVV 634 (908)
Q Consensus 632 ~VI 634 (908)
+||
T Consensus 360 lvV 362 (630)
T TIGR00643 360 LVI 362 (630)
T ss_pred eEE
Confidence 777
No 457
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=85.10 E-value=0.39 Score=48.67 Aligned_cols=21 Identities=43% Similarity=0.748 Sum_probs=18.3
Q ss_pred HHhCCeEEEEecCCCCccchH
Q 002552 294 VAENQVLVVSGETGCGKTTQL 314 (908)
Q Consensus 294 i~~~~~vii~a~TGSGKTt~~ 314 (908)
+..|.+++|+||.||||||.+
T Consensus 25 v~~Gevv~iiGpSGSGKSTlL 45 (240)
T COG1126 25 VEKGEVVVIIGPSGSGKSTLL 45 (240)
T ss_pred EcCCCEEEEECCCCCCHHHHH
Confidence 567999999999999999843
No 458
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=85.05 E-value=23 Score=38.65 Aligned_cols=130 Identities=15% Similarity=0.199 Sum_probs=68.9
Q ss_pred hCCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcc----cHHHHHHHHHHHHHHhCCCCCCEEeEEeecccc
Q 002552 296 ENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQP----RRISAISVAARVSSERGENLGETVGYQIRLESK 371 (908)
Q Consensus 296 ~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P----~r~la~qi~~rv~~~~~~~~g~~vg~~~~~~~~ 371 (908)
+++.++++||-|||||+.+--.+.+ .. ..+.+..++=+-+ -+.+...++..++.++... +...|--
T Consensus 48 EsnsviiigprgsgkT~li~~~Ls~-~q--~~~E~~l~v~Lng~~~~dk~al~~I~rql~~e~~~~-~k~~gsf------ 117 (408)
T KOG2228|consen 48 ESNSVIIIGPRGSGKTILIDTRLSD-IQ--ENGENFLLVRLNGELQTDKIALKGITRQLALELNRI-VKSFGSF------ 117 (408)
T ss_pred CCCceEEEccCCCCceEeeHHHHhh-HH--hcCCeEEEEEECccchhhHHHHHHHHHHHHHHHhhh-heeeccc------
Confidence 3567999999999999766655554 21 1222222322222 4455566666666665432 1111100
Q ss_pred CCCCCcEEEEchHHHHHHHhcCCCCCcc-eEEEEechhccc--hhhHHHHHHHHHHCccCCCCcEEEecccCChH
Q 002552 372 RSAQTRLLFCTTGVLLRQLVEDPDLSCV-SHLLVDEIHERG--MNEDFLLIILRDLLPRRPDLRLILMSATINAD 443 (908)
Q Consensus 372 ~~~~~~Iiv~T~g~Ll~~l~~~~~l~~~-~~iIiDEaHeR~--~~~d~ll~~lk~~~~~~~~~qiIlmSAT~~~~ 443 (908)
+. +-..|+..|.++...... =+.|+||+|--. ...-.+-.+.......+..+=+|++|.-+|.-
T Consensus 118 ----te----~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrld~l 184 (408)
T KOG2228|consen 118 ----TE----NLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRLDIL 184 (408)
T ss_pred ----ch----hHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeeccccHH
Confidence 00 124567777666555555 456778888211 11222333333333345557788888887643
No 459
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=85.01 E-value=0.65 Score=46.27 Aligned_cols=45 Identities=18% Similarity=0.129 Sum_probs=26.7
Q ss_pred EchHHHHHHHhcCCCCCcceEEEEechhccchhhHHHHHHHHHHCc
Q 002552 381 CTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLP 426 (908)
Q Consensus 381 ~T~g~Ll~~l~~~~~l~~~~~iIiDEaHeR~~~~d~ll~~lk~~~~ 426 (908)
.+.|...+.........+-.++++||-- .++|.+....+++.+..
T Consensus 96 LS~G~~qrv~laral~~~p~illlDEPt-~~LD~~~~~~l~~~l~~ 140 (173)
T cd03230 96 LSGGMKQRLALAQALLHDPELLILDEPT-SGLDPESRREFWELLRE 140 (173)
T ss_pred cCHHHHHHHHHHHHHHcCCCEEEEeCCc-cCCCHHHHHHHHHHHHH
Confidence 4455433332222244567899999998 67777765555554443
No 460
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=85.00 E-value=1.8 Score=45.72 Aligned_cols=24 Identities=38% Similarity=0.480 Sum_probs=18.0
Q ss_pred hHHHHHHHhcCCCCCcceEEEEechhc
Q 002552 383 TGVLLRQLVEDPDLSCVSHLLVDEIHE 409 (908)
Q Consensus 383 ~g~Ll~~l~~~~~l~~~~~iIiDEaHe 409 (908)
||=|...|. +|+.-+++.|||+|.
T Consensus 91 ~gDlaaiLt---~Le~~DVLFIDEIHr 114 (332)
T COG2255 91 PGDLAAILT---NLEEGDVLFIDEIHR 114 (332)
T ss_pred hhhHHHHHh---cCCcCCeEEEehhhh
Confidence 555666553 578889999999994
No 461
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=84.79 E-value=2.3 Score=52.75 Aligned_cols=21 Identities=24% Similarity=0.319 Sum_probs=17.0
Q ss_pred hCCeEEEEecCCCCccchHHH
Q 002552 296 ENQVLVVSGETGCGKTTQLPQ 316 (908)
Q Consensus 296 ~~~~vii~a~TGSGKTt~~~~ 316 (908)
..+.+++.||+|||||+.+-.
T Consensus 211 ~~~giLL~GppGtGKT~lara 231 (733)
T TIGR01243 211 PPKGVLLYGPPGTGKTLLAKA 231 (733)
T ss_pred CCceEEEECCCCCChHHHHHH
Confidence 457899999999999975443
No 462
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=84.75 E-value=1.1 Score=46.87 Aligned_cols=29 Identities=34% Similarity=0.521 Sum_probs=25.3
Q ss_pred hCCeEEEEecCCCCccchHHHHHHHHHHh
Q 002552 296 ENQVLVVSGETGCGKTTQLPQFILEEELS 324 (908)
Q Consensus 296 ~~~~vii~a~TGSGKTt~~~~~il~~~~~ 324 (908)
.+..++|.|++|||||+...+++.+.+..
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~ 46 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKN 46 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhh
Confidence 47899999999999999999998887643
No 463
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=84.51 E-value=0.95 Score=52.90 Aligned_cols=36 Identities=28% Similarity=0.349 Sum_probs=23.9
Q ss_pred CCchHHHHHHHHHHHh--CCeEEEEecCCCCccchHHH
Q 002552 281 LPAFKMKAEFLKAVAE--NQVLVVSGETGCGKTTQLPQ 316 (908)
Q Consensus 281 lpi~~~Q~~~i~~i~~--~~~vii~a~TGSGKTt~~~~ 316 (908)
|-..+.+.+.+..+.. +..++|+|||||||||.+-.
T Consensus 224 Lg~~~~~~~~l~~~~~~~~GlilitGptGSGKTTtL~a 261 (486)
T TIGR02533 224 LGMSPELLSRFERLIRRPHGIILVTGPTGSGKTTTLYA 261 (486)
T ss_pred cCCCHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHH
Confidence 3334555555555443 34689999999999986643
No 464
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=84.51 E-value=2.5 Score=52.50 Aligned_cols=21 Identities=24% Similarity=0.314 Sum_probs=16.3
Q ss_pred CCeEEEEecCCCCccchHHHH
Q 002552 297 NQVLVVSGETGCGKTTQLPQF 317 (908)
Q Consensus 297 ~~~vii~a~TGSGKTt~~~~~ 317 (908)
.+.+++.||+|||||+.+-..
T Consensus 487 ~~giLL~GppGtGKT~lakal 507 (733)
T TIGR01243 487 PKGVLLFGPPGTGKTLLAKAV 507 (733)
T ss_pred CceEEEECCCCCCHHHHHHHH
Confidence 356899999999999655444
No 465
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=84.40 E-value=1 Score=53.82 Aligned_cols=34 Identities=26% Similarity=0.354 Sum_probs=23.1
Q ss_pred CCchHHHHHHHHHH-H-hCCeEEEEecCCCCccchH
Q 002552 281 LPAFKMKAEFLKAV-A-ENQVLVVSGETGCGKTTQL 314 (908)
Q Consensus 281 lpi~~~Q~~~i~~i-~-~~~~vii~a~TGSGKTt~~ 314 (908)
|-..+.+.+.+..+ . .+..++|+|||||||||.+
T Consensus 298 lg~~~~~~~~l~~~~~~~~Glilv~G~tGSGKTTtl 333 (564)
T TIGR02538 298 LGFEPDQKALFLEAIHKPQGMVLVTGPTGSGKTVSL 333 (564)
T ss_pred cCCCHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHH
Confidence 33344555555544 3 3557899999999999876
No 466
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=84.35 E-value=0.65 Score=60.19 Aligned_cols=171 Identities=16% Similarity=0.169 Sum_probs=100.9
Q ss_pred EEEecCCHHHHHHHHHHHHhcccCCCCCceEEEeccCCCC-------hHhHHhhhCCCCCCCcEEEEeccccccccCCCC
Q 002552 557 ILVFLTGWNDISKLLDQIKVNKFLGDPNKFLVLPLHGSMP-------TINQREIFDRPPPNKRKIVLATNIAESSITIDD 629 (908)
Q Consensus 557 iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lH~~l~-------~~er~~v~~~f~~g~~kIlvaT~iae~GidIp~ 629 (908)
.++|++.+..+..+.+.++...... ..+.+...-..+. .-.|.+++..|.....++|++|.+++.|+|+|.
T Consensus 295 ~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~ 372 (1606)
T KOG0701|consen 295 GIIFVDQRYTAYVLLELLREIFSND--PLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDVPK 372 (1606)
T ss_pred heeecccchHHHHHHHHHHHhhccC--cceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcchhh
Confidence 4899999999999888887643211 1221111111111 124677899999999999999999999999999
Q ss_pred eEEEEeCCCccceeeccccCccccccccccHhhHHHhccccCCCCCcEEEEecChh---------hHhhcCCCCCCcccc
Q 002552 630 VVYVVDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRVQPGVCYKLYPRI---------IHDAMLPYQLPEILR 700 (908)
Q Consensus 630 v~~VId~g~~k~~~yd~~~~~~~l~~~~iS~~~~~QR~GRaGR~~~G~~~~l~~~~---------~~~~l~~~~~pei~r 700 (908)
++.||..+.|- ...+|+|+.||+-+. +..+.++-.. .+.....-..|++..
T Consensus 373 ~~~~~~~~~~~------------------~~~~~vq~~~r~~~~--~~~~~i~~~t~~~~~~~~~s~~~~~~i~~~~l~~ 432 (1606)
T KOG0701|consen 373 CNLVVLFDAPT------------------YYRSYVQKKGRARAA--DSYLVILGETLSAVSLKNPSYAYTEQIPRPQLFL 432 (1606)
T ss_pred hhhheeccCcc------------------hHHHHHHhhcccccc--hhhHHHHHhhhhhhhhcChhHhHHhhcccchhhc
Confidence 99999888776 344999999998553 1122121111 111111222343332
Q ss_pred C---chHHHHHHHhhcCCCchhhhhhccCCCCCHHHHHHHHHHHHHcCCCCC
Q 002552 701 T---PLQELCLHIKSLQLGTVGSFLSKALQPPDPLAVQNAIELLKTIGALDD 749 (908)
Q Consensus 701 ~---~L~~~~L~~~~l~~~~~~~fl~~~~~~p~~~~v~~al~~L~~~gal~~ 749 (908)
. ++..+|-............++.-.++.|...-+..+-..|..+|-+|+
T Consensus 433 ~~~~~v~~~~~~~e~~~~~~~~~~v~~~~~~p~~~~~~~~~~~l~~~~~~d~ 484 (1606)
T KOG0701|consen 433 RLDANVNKYCARAELLKHVPFLSTVVLPVNSPLKMCIVGLCLKLHKIGELDD 484 (1606)
T ss_pred ccccchHHHHHHHHhccCCCcceeEEEecCchHHHHHHHhHHHHHHhhhhhh
Confidence 2 233333333333333333334345566666666666777777776653
No 467
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=84.10 E-value=3.7 Score=44.21 Aligned_cols=120 Identities=13% Similarity=0.148 Sum_probs=62.8
Q ss_pred HHHHHHHHHH-hCCeEEEEecCCCCccchHHHHHHHHHH-----hccCCCCcEEEEE--cccHHHHHHHHHHHHHHhCCC
Q 002552 286 MKAEFLKAVA-ENQVLVVSGETGCGKTTQLPQFILEEEL-----SSLRGADCNIICT--QPRRISAISVAARVSSERGEN 357 (908)
Q Consensus 286 ~Q~~~i~~i~-~~~~vii~a~TGSGKTt~~~~~il~~~~-----~~~~~~~~~ilv~--~P~r~la~qi~~rv~~~~~~~ 357 (908)
.+.+.|+-.. ++-.+++.|+.|.||||.+++..+.... .+.....++|+++ .-.|+-+..-.+.+...++.+
T Consensus 77 ~~P~lId~~fr~g~~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl~re~~L~Rl~~v~a~mgLs 156 (402)
T COG3598 77 NSPQLIDEFFRKGYVSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELYREDILERLEPVRARMGLS 156 (402)
T ss_pred cChhhhhHHhhcCeeEEEecCCcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEEeccChHHHHHHHHHHHHHcCCC
Confidence 4556677655 4556677799999999988776654432 1111123345543 456666666666677777665
Q ss_pred CCCEEeEEeeccccCCCCCcEEEEchHHHHHHHhcCCCCCcceEEEEechh
Q 002552 358 LGETVGYQIRLESKRSAQTRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIH 408 (908)
Q Consensus 358 ~g~~vg~~~~~~~~~~~~~~Iiv~T~g~Ll~~l~~~~~l~~~~~iIiDEaH 408 (908)
.+..--... .+.......--+..| .|++.+.....-.+.+++|||-.=
T Consensus 157 Padvrn~dl--td~~Gaa~~~d~l~p-kl~rRfek~~~Q~rp~~vViDp~v 204 (402)
T COG3598 157 PADVRNMDL--TDVSGAADESDVLSP-KLYRRFEKILEQKRPDFVVIDPFV 204 (402)
T ss_pred hHhhhheec--cccccCCCccccccH-HHHHHHHHHHHHhCCCeEEEcchh
Confidence 433211111 000000011112234 555555443334567888888654
No 468
>PRK14873 primosome assembly protein PriA; Provisional
Probab=84.10 E-value=2 Score=52.05 Aligned_cols=77 Identities=14% Similarity=0.125 Sum_probs=61.5
Q ss_pred CCCcEEEecCCHHHHHHHHHHHHhcccCCCCCceEEEeccCCCChHhHHhhhCCCCCCCcEEEEeccccccccCCCCeEE
Q 002552 553 GDGAILVFLTGWNDISKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATNIAESSITIDDVVY 632 (908)
Q Consensus 553 ~~g~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lH~~l~~~er~~v~~~f~~g~~kIlvaT~iae~GidIp~v~~ 632 (908)
.++++||.+|....+..+.+.|.... ....|..+||+++..+|.+.+....+|+.+|||-|--|- =.-+++...
T Consensus 187 ~Gk~vLvLvPEi~lt~q~~~rl~~~f-----~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRSAv-FaP~~~LgL 260 (665)
T PRK14873 187 AGRGALVVVPDQRDVDRLEAALRALL-----GAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRSAV-FAPVEDLGL 260 (665)
T ss_pred cCCeEEEEecchhhHHHHHHHHHHHc-----CCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEcceeE-EeccCCCCE
Confidence 35679999999999999999998632 113488899999999999999999999999999996543 235666666
Q ss_pred EEe
Q 002552 633 VVD 635 (908)
Q Consensus 633 VId 635 (908)
||-
T Consensus 261 IIv 263 (665)
T PRK14873 261 VAI 263 (665)
T ss_pred EEE
Confidence 663
No 469
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=84.00 E-value=6.3 Score=39.24 Aligned_cols=39 Identities=23% Similarity=0.178 Sum_probs=28.1
Q ss_pred CeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHH
Q 002552 298 QVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRI 341 (908)
Q Consensus 298 ~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~ 341 (908)
--++|--..|=||||++.=.++..+ |.+.+|+|+|=-+-
T Consensus 29 Gli~V~TG~GKGKTTAAlG~alRa~-----GhG~rv~vvQFiKg 67 (198)
T COG2109 29 GLIIVFTGNGKGKTTAALGLALRAL-----GHGLRVGVVQFIKG 67 (198)
T ss_pred CeEEEEecCCCChhHHHHHHHHHHh-----cCCCEEEEEEEeec
Confidence 3477777788899999888777654 34568888875443
No 470
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=83.88 E-value=4.1 Score=51.34 Aligned_cols=21 Identities=33% Similarity=0.487 Sum_probs=17.0
Q ss_pred CCeEEEEecCCCCccchHHHH
Q 002552 297 NQVLVVSGETGCGKTTQLPQF 317 (908)
Q Consensus 297 ~~~vii~a~TGSGKTt~~~~~ 317 (908)
.+++++.||+|+|||+.+-.+
T Consensus 194 ~~n~lL~G~pGvGKT~l~~~l 214 (852)
T TIGR03346 194 KNNPVLIGEPGVGKTAIVEGL 214 (852)
T ss_pred CCceEEEcCCCCCHHHHHHHH
Confidence 358999999999999766543
No 471
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=83.88 E-value=1.2 Score=44.57 Aligned_cols=23 Identities=26% Similarity=0.538 Sum_probs=18.8
Q ss_pred HHhCCeEEEEecCCCCccchHHH
Q 002552 294 VAENQVLVVSGETGCGKTTQLPQ 316 (908)
Q Consensus 294 i~~~~~vii~a~TGSGKTt~~~~ 316 (908)
+..|+.+.+.|+.||||||.+-.
T Consensus 22 i~~G~~~~l~G~nGsGKStLl~~ 44 (180)
T cd03214 22 IEAGEIVGILGPNGAGKSTLLKT 44 (180)
T ss_pred ECCCCEEEEECCCCCCHHHHHHH
Confidence 34789999999999999985443
No 472
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=83.59 E-value=5 Score=46.49 Aligned_cols=74 Identities=20% Similarity=0.267 Sum_probs=57.1
Q ss_pred CCcEEEecCCHHHHHHHHHHHHhcccCCCCCceEEEeccCCCChHhHHhhhCCCCCCCcEEEEecc-----ccc-cccCC
Q 002552 554 DGAILVFLTGWNDISKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATN-----IAE-SSITI 627 (908)
Q Consensus 554 ~g~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lH~~l~~~er~~v~~~f~~g~~kIlvaT~-----iae-~GidI 627 (908)
...+||-+||++-+..+.+...+. +....+...+++|+.+...|..-++. -..|+|||+ .++ -.+++
T Consensus 165 ~P~vLVL~PTRELA~QV~~~~~~~---~~~~~~~~~cvyGG~~~~~Q~~~l~~----gvdiviaTPGRl~d~le~g~~~l 237 (519)
T KOG0331|consen 165 GPIVLVLAPTRELAVQVQAEAREF---GKSLRLRSTCVYGGAPKGPQLRDLER----GVDVVIATPGRLIDLLEEGSLNL 237 (519)
T ss_pred CCeEEEEcCcHHHHHHHHHHHHHH---cCCCCccEEEEeCCCCccHHHHHHhc----CCcEEEeCChHHHHHHHcCCccc
Confidence 346999999999999888777652 22245778999999999888777653 378999998 444 45677
Q ss_pred CCeEEEE
Q 002552 628 DDVVYVV 634 (908)
Q Consensus 628 p~v~~VI 634 (908)
..|+|+|
T Consensus 238 ~~v~ylV 244 (519)
T KOG0331|consen 238 SRVTYLV 244 (519)
T ss_pred cceeEEE
Confidence 8999998
No 473
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=83.52 E-value=0.48 Score=50.55 Aligned_cols=17 Identities=35% Similarity=0.587 Sum_probs=14.7
Q ss_pred hCCeEEEEecCCCCccc
Q 002552 296 ENQVLVVSGETGCGKTT 312 (908)
Q Consensus 296 ~~~~vii~a~TGSGKTt 312 (908)
+..|+++.||||||||+
T Consensus 96 ~KSNILLiGPTGsGKTl 112 (408)
T COG1219 96 SKSNILLIGPTGSGKTL 112 (408)
T ss_pred eeccEEEECCCCCcHHH
Confidence 45689999999999994
No 474
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=83.48 E-value=1.2 Score=45.26 Aligned_cols=44 Identities=25% Similarity=0.193 Sum_probs=26.8
Q ss_pred CCCcceEEEEechhccchhhHHHHHHHHHHCccCCCCcEEEeccc
Q 002552 395 DLSCVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILMSAT 439 (908)
Q Consensus 395 ~l~~~~~iIiDEaHeR~~~~d~ll~~lk~~~~~~~~~qiIlmSAT 439 (908)
.+.+-.++++||-- .++|.+....+.+.+......-++|+++..
T Consensus 126 l~~~p~illlDEP~-~~LD~~~~~~l~~~l~~~~~~~~tiii~sh 169 (194)
T cd03213 126 LVSNPSLLFLDEPT-SGLDSSSALQVMSLLRRLADTGRTIICSIH 169 (194)
T ss_pred HHcCCCEEEEeCCC-cCCCHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 34567899999999 778777665555544433222244554444
No 475
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=83.39 E-value=3.6 Score=50.98 Aligned_cols=19 Identities=37% Similarity=0.581 Sum_probs=15.1
Q ss_pred eEEEEecCCCCccchHHHH
Q 002552 299 VLVVSGETGCGKTTQLPQF 317 (908)
Q Consensus 299 ~vii~a~TGSGKTt~~~~~ 317 (908)
+++++||||+|||+.+-.+
T Consensus 486 ~~lf~Gp~GvGKT~lA~~l 504 (731)
T TIGR02639 486 SFLFTGPTGVGKTELAKQL 504 (731)
T ss_pred eEEEECCCCccHHHHHHHH
Confidence 5799999999999655443
No 476
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=83.38 E-value=2.4 Score=53.44 Aligned_cols=78 Identities=13% Similarity=0.158 Sum_probs=63.1
Q ss_pred CCcEEEecCCHHHHHHHHHHHHhcccCCCCCceEEEeccCCCChHhHHhhhCCCCCCCcEEEEecc-ccccccCCCCeEE
Q 002552 554 DGAILVFLTGWNDISKLLDQIKVNKFLGDPNKFLVLPLHGSMPTINQREIFDRPPPNKRKIVLATN-IAESSITIDDVVY 632 (908)
Q Consensus 554 ~g~iLVF~~~~~~i~~l~~~L~~~~~~~~~~~~~v~~lH~~l~~~er~~v~~~f~~g~~kIlvaT~-iae~GidIp~v~~ 632 (908)
+.+++|.+||+.-+...++.+.... .. ..+.+..++|..+..+++++++..+.|...|||+|. ++...+.+.++.+
T Consensus 500 g~qvlvLvPT~~LA~Q~~~~f~~~~--~~-~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~v~f~~L~l 576 (926)
T TIGR00580 500 GKQVAVLVPTTLLAQQHFETFKERF--AN-FPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKDVKFKDLGL 576 (926)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHh--cc-CCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCCCCcccCCE
Confidence 4689999999999999888877521 11 356788899999999999999888899999999997 4445677888877
Q ss_pred EE
Q 002552 633 VV 634 (908)
Q Consensus 633 VI 634 (908)
||
T Consensus 577 lV 578 (926)
T TIGR00580 577 LI 578 (926)
T ss_pred EE
Confidence 77
No 477
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=83.34 E-value=0.76 Score=43.85 Aligned_cols=20 Identities=25% Similarity=0.594 Sum_probs=16.1
Q ss_pred eEEEEecCCCCccchHHHHH
Q 002552 299 VLVVSGETGCGKTTQLPQFI 318 (908)
Q Consensus 299 ~vii~a~TGSGKTt~~~~~i 318 (908)
+++++|++||||||.+-.+.
T Consensus 1 lii~~G~pgsGKSt~a~~l~ 20 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLA 20 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHH
Confidence 47999999999998655543
No 478
>PRK05973 replicative DNA helicase; Provisional
Probab=83.31 E-value=0.99 Score=47.27 Aligned_cols=60 Identities=15% Similarity=0.213 Sum_probs=39.7
Q ss_pred HHHHHHHHHhCCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHH
Q 002552 287 KAEFLKAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSS 352 (908)
Q Consensus 287 Q~~~i~~i~~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~ 352 (908)
.+++.--+..+..++|.|++|+|||+...+++.+.+. .+ .+++++ -.-+-..++.+++..
T Consensus 54 ~~~l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~---~G--e~vlyf-SlEes~~~i~~R~~s 113 (237)
T PRK05973 54 AEELFSQLKPGDLVLLGARPGHGKTLLGLELAVEAMK---SG--RTGVFF-TLEYTEQDVRDRLRA 113 (237)
T ss_pred HHHhcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHh---cC--CeEEEE-EEeCCHHHHHHHHHH
Confidence 3445566778999999999999999998888877652 22 234433 222334566666643
No 479
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=83.26 E-value=4.3 Score=47.53 Aligned_cols=18 Identities=33% Similarity=0.612 Sum_probs=15.1
Q ss_pred CCeEEEEecCCCCccchH
Q 002552 297 NQVLVVSGETGCGKTTQL 314 (908)
Q Consensus 297 ~~~vii~a~TGSGKTt~~ 314 (908)
.+.+++.||+|||||+.+
T Consensus 216 p~GILLyGPPGTGKT~LA 233 (512)
T TIGR03689 216 PKGVLLYGPPGCGKTLIA 233 (512)
T ss_pred CcceEEECCCCCcHHHHH
Confidence 467999999999999643
No 480
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=83.10 E-value=5.2 Score=48.75 Aligned_cols=120 Identities=23% Similarity=0.272 Sum_probs=63.2
Q ss_pred CeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCCEEeEEeeccccCCCCCc
Q 002552 298 QVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLGETVGYQIRLESKRSAQTR 377 (908)
Q Consensus 298 ~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~~~~~~~g~~vg~~~~~~~~~~~~~~ 377 (908)
...+..||||.|||-.+-+. .+.++.. -..++.--.-+-. =..-+++..|.+.| .|||.-.
T Consensus 522 gsFlF~GPTGVGKTELAkaL-A~~Lfg~-----e~aliR~DMSEy~--EkHsVSrLIGaPPG-YVGyeeG---------- 582 (786)
T COG0542 522 GSFLFLGPTGVGKTELAKAL-AEALFGD-----EQALIRIDMSEYM--EKHSVSRLIGAPPG-YVGYEEG---------- 582 (786)
T ss_pred eEEEeeCCCcccHHHHHHHH-HHHhcCC-----CccceeechHHHH--HHHHHHHHhCCCCC-Cceeccc----------
Confidence 37899999999999544332 2333211 1223322221211 11235556666654 4776532
Q ss_pred EEEEchHHHHHHHhcCCCCCcceEEEEechhccchhhHHHHHHHHHHCc----cCC----CC--cEEEecccCChHHHHh
Q 002552 378 LLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNEDFLLIILRDLLP----RRP----DL--RLILMSATINADLFSK 447 (908)
Q Consensus 378 Iiv~T~g~Ll~~l~~~~~l~~~~~iIiDEaHeR~~~~d~ll~~lk~~~~----~~~----~~--qiIlmSAT~~~~~~~~ 447 (908)
|.|...+++. -|++|.+||+.. ...|++-.++..+-. -.. +. -+|+||.-+-.+.+.+
T Consensus 583 ------G~LTEaVRr~----PySViLlDEIEK--AHpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN~Gs~~i~~ 650 (786)
T COG0542 583 ------GQLTEAVRRK----PYSVILLDEIEK--AHPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSNAGSEEILR 650 (786)
T ss_pred ------cchhHhhhcC----CCeEEEechhhh--cCHHHHHHHHHHhcCCeeecCCCCEEecceeEEEEecccchHHHHh
Confidence 3455556554 489999999874 344444444333321 000 12 2677777776666554
Q ss_pred h
Q 002552 448 Y 448 (908)
Q Consensus 448 ~ 448 (908)
.
T Consensus 651 ~ 651 (786)
T COG0542 651 D 651 (786)
T ss_pred h
Confidence 4
No 481
>CHL00176 ftsH cell division protein; Validated
Probab=83.02 E-value=4.6 Score=48.79 Aligned_cols=21 Identities=24% Similarity=0.357 Sum_probs=16.7
Q ss_pred CCeEEEEecCCCCccchHHHH
Q 002552 297 NQVLVVSGETGCGKTTQLPQF 317 (908)
Q Consensus 297 ~~~vii~a~TGSGKTt~~~~~ 317 (908)
.+.+++.||+|+|||+.+-..
T Consensus 216 p~gVLL~GPpGTGKT~LAral 236 (638)
T CHL00176 216 PKGVLLVGPPGTGKTLLAKAI 236 (638)
T ss_pred CceEEEECCCCCCHHHHHHHH
Confidence 457999999999999755443
No 482
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=83.01 E-value=3.5 Score=40.67 Aligned_cols=23 Identities=22% Similarity=0.547 Sum_probs=19.0
Q ss_pred HHhCCeEEEEecCCCCccchHHH
Q 002552 294 VAENQVLVVSGETGCGKTTQLPQ 316 (908)
Q Consensus 294 i~~~~~vii~a~TGSGKTt~~~~ 316 (908)
+..|+.+.|.|+.||||||.+-.
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~ 46 (166)
T cd03223 24 IKPGDRLLITGPSGTGKSSLFRA 46 (166)
T ss_pred ECCCCEEEEECCCCCCHHHHHHH
Confidence 45789999999999999985543
No 483
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=82.90 E-value=5.8 Score=40.43 Aligned_cols=42 Identities=17% Similarity=0.101 Sum_probs=25.8
Q ss_pred CCcceEEEEechhccchhhHHHHHHHHHHCccC---CCCcEEEecc
Q 002552 396 LSCVSHLLVDEIHERGMNEDFLLIILRDLLPRR---PDLRLILMSA 438 (908)
Q Consensus 396 l~~~~~iIiDEaHeR~~~~d~ll~~lk~~~~~~---~~~qiIlmSA 438 (908)
+.+-.++|+||.. .+++......+.+.+.... ...++|++|.
T Consensus 129 ~~~p~illlDEP~-~glD~~~~~~~~~~l~~~~~~~~~~~~iii~t 173 (198)
T cd03276 129 VMESPFRCLDEFD-VFMDMVNRKISTDLLVKEAKKQPGRQFIFITP 173 (198)
T ss_pred ccCCCEEEecCcc-cccCHHHHHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 3577899999999 6777665544444433321 2345666654
No 484
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=82.90 E-value=0.74 Score=52.79 Aligned_cols=47 Identities=26% Similarity=0.260 Sum_probs=33.7
Q ss_pred HHHHhCCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHH
Q 002552 292 KAVAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISA 343 (908)
Q Consensus 292 ~~i~~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la 343 (908)
+.-...++++|.|+||||||+.+...+.. +... +.+++|+=|..++.
T Consensus 37 ~~~~~~~h~~i~g~tGsGKt~~i~~l~~~-~~~~----~~~~vi~D~kg~~~ 83 (410)
T cd01127 37 PKDAEEAHTMIIGTTGTGKTTQIRELLAS-IRAR----GDRAIIYDPNGGFV 83 (410)
T ss_pred CcchhhccEEEEcCCCCCHHHHHHHHHHH-HHhc----CCCEEEEeCCcchh
Confidence 33445789999999999999877665543 3322 34788989988765
No 485
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=82.82 E-value=2.8 Score=41.25 Aligned_cols=25 Identities=28% Similarity=0.465 Sum_probs=19.1
Q ss_pred CCeEEEEecCCCCccchHHHHHHHH
Q 002552 297 NQVLVVSGETGCGKTTQLPQFILEE 321 (908)
Q Consensus 297 ~~~vii~a~TGSGKTt~~~~~il~~ 321 (908)
++.++|+||.|||||+.+-...+-.
T Consensus 21 ~~~~~i~G~NgsGKS~~l~~i~~~~ 45 (162)
T cd03227 21 GSLTIITGPNGSGKSTILDAIGLAL 45 (162)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 3689999999999997765544433
No 486
>TIGR02784 addA_alphas double-strand break repair helicase AddA, alphaproteobacterial type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the alphaproteobacteria (as modeled here) and the Firmicutes, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=82.81 E-value=2.3 Score=55.55 Aligned_cols=60 Identities=25% Similarity=0.313 Sum_probs=47.5
Q ss_pred HHhCCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhC
Q 002552 294 VAENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERG 355 (908)
Q Consensus 294 i~~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~~~~ 355 (908)
+.-.+.++|.|+.|||||+.+..-++..+... .....|+|+.-|+.+|.++..|+.+.+.
T Consensus 7 ~dp~~~~~~~a~agsgkt~~l~~~~~~~~~~~--~~~~~i~~~t~t~~aa~em~~Ri~~~L~ 66 (1141)
T TIGR02784 7 SDPKTSAWVSANAGSGKTHVLTQRVIRLLLNG--VPPSKILCLTYTKAAAAEMQNRVFDRLG 66 (1141)
T ss_pred cCCCCCEEEEEECCCCHHHHHHHHHHHHHHcC--CCCCeEEEEecCHHHHHHHHHHHHHHHH
Confidence 34467889999999999988877777665432 2245899999999999999999887764
No 487
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=82.79 E-value=2.8 Score=51.14 Aligned_cols=70 Identities=14% Similarity=0.131 Sum_probs=50.7
Q ss_pred cCCCchHHHHHHHHHHHh----C-CeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHH
Q 002552 279 EKLPAFKMKAEFLKAVAE----N-QVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSE 353 (908)
Q Consensus 279 ~~lpi~~~Q~~~i~~i~~----~-~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~~ 353 (908)
....++..|...+..+.+ + +..++.|.||||||..+...+ +.. +..+||++|+...|.+++..+...
T Consensus 9 ~~~~~~~~Q~~ai~~l~~~~~~~~~~~ll~Gl~gs~ka~lia~l~-~~~-------~r~vLIVt~~~~~A~~l~~dL~~~ 80 (652)
T PRK05298 9 SPYKPAGDQPQAIEELVEGIEAGEKHQTLLGVTGSGKTFTMANVI-ARL-------QRPTLVLAHNKTLAAQLYSEFKEF 80 (652)
T ss_pred cCCCCChHHHHHHHHHHHhhhcCCCcEEEEcCCCcHHHHHHHHHH-HHh-------CCCEEEEECCHHHHHHHHHHHHHh
Confidence 445667788887777643 2 256799999999996654322 211 236889999999999999999887
Q ss_pred hCC
Q 002552 354 RGE 356 (908)
Q Consensus 354 ~~~ 356 (908)
++.
T Consensus 81 ~~~ 83 (652)
T PRK05298 81 FPE 83 (652)
T ss_pred cCC
Confidence 654
No 488
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=82.73 E-value=1.2 Score=47.95 Aligned_cols=27 Identities=22% Similarity=0.529 Sum_probs=20.5
Q ss_pred HHHH-HHhCCeEEEEecCCCCccchHHH
Q 002552 290 FLKA-VAENQVLVVSGETGCGKTTQLPQ 316 (908)
Q Consensus 290 ~i~~-i~~~~~vii~a~TGSGKTt~~~~ 316 (908)
++.. +.+++.++++||||||||+.+-.
T Consensus 25 ll~~l~~~~~pvLl~G~~GtGKT~li~~ 52 (272)
T PF12775_consen 25 LLDLLLSNGRPVLLVGPSGTGKTSLIQN 52 (272)
T ss_dssp HHHHHHHCTEEEEEESSTTSSHHHHHHH
T ss_pred HHHHHHHcCCcEEEECCCCCchhHHHHh
Confidence 4444 45678999999999999964444
No 489
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=82.73 E-value=4.9 Score=45.39 Aligned_cols=16 Identities=38% Similarity=0.536 Sum_probs=14.3
Q ss_pred CCeEEEEecCCCCccc
Q 002552 297 NQVLVVSGETGCGKTT 312 (908)
Q Consensus 297 ~~~vii~a~TGSGKTt 312 (908)
.+.+++.|++|+|||.
T Consensus 113 ~nplfi~G~~GlGKTH 128 (408)
T COG0593 113 YNPLFIYGGVGLGKTH 128 (408)
T ss_pred CCcEEEECCCCCCHHH
Confidence 5679999999999994
No 490
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=82.69 E-value=0.81 Score=45.77 Aligned_cols=21 Identities=33% Similarity=0.659 Sum_probs=17.0
Q ss_pred CCeEEEEecCCCCccchHHHH
Q 002552 297 NQVLVVSGETGCGKTTQLPQF 317 (908)
Q Consensus 297 ~~~vii~a~TGSGKTt~~~~~ 317 (908)
|+.+++.||+||||||.+-..
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L 21 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKAL 21 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHH
Confidence 567899999999999855443
No 491
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=82.67 E-value=2.3 Score=42.93 Aligned_cols=59 Identities=17% Similarity=0.192 Sum_probs=35.9
Q ss_pred HhCCeEEEEecCCCCccchHHHHHHHHHHhcc-----CCCCcEEEEEcccHHHHHHHHHHHHHHh
Q 002552 295 AENQVLVVSGETGCGKTTQLPQFILEEELSSL-----RGADCNIICTQPRRISAISVAARVSSER 354 (908)
Q Consensus 295 ~~~~~vii~a~TGSGKTt~~~~~il~~~~~~~-----~~~~~~ilv~~P~r~la~qi~~rv~~~~ 354 (908)
..+..+++.|++|+|||+.+.+++........ .....+|+++..-- -..++.+|+....
T Consensus 30 ~~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~-~~~~~~~rl~~~~ 93 (193)
T PF13481_consen 30 PRGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLED-SESQIARRLRALL 93 (193)
T ss_dssp -TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS--HHHHHHHHHHHH
T ss_pred cCCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccC-CHHHHHHHHHHHh
Confidence 36889999999999999988888776653110 11345777764322 2556667776544
No 492
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=82.56 E-value=3.2 Score=44.32 Aligned_cols=27 Identities=22% Similarity=0.443 Sum_probs=23.8
Q ss_pred hCCeEEEEecCCCCccchHHHHHHHHH
Q 002552 296 ENQVLVVSGETGCGKTTQLPQFILEEE 322 (908)
Q Consensus 296 ~~~~vii~a~TGSGKTt~~~~~il~~~ 322 (908)
.+..++|.|++|||||+...+++.+.+
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a 61 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQA 61 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999998887754
No 493
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=82.38 E-value=1.2 Score=51.08 Aligned_cols=27 Identities=30% Similarity=0.631 Sum_probs=22.0
Q ss_pred hCCeEEEEecCCCCccchHHHHHHHHH
Q 002552 296 ENQVLVVSGETGCGKTTQLPQFILEEE 322 (908)
Q Consensus 296 ~~~~vii~a~TGSGKTt~~~~~il~~~ 322 (908)
.++.++++||+||||||.+-...-+..
T Consensus 109 ~~~iLLltGPsGcGKSTtvkvLskelg 135 (634)
T KOG1970|consen 109 GSRILLLTGPSGCGKSTTVKVLSKELG 135 (634)
T ss_pred CceEEEEeCCCCCCchhHHHHHHHhhC
Confidence 478999999999999998876655543
No 494
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=82.25 E-value=4.7 Score=50.64 Aligned_cols=126 Identities=18% Similarity=0.180 Sum_probs=0.0
Q ss_pred HHHHHHHHHh------CCeEEEEecCCCCccchHHHHHHHHHHhccCC---CCcEEEEEcccHHHHHHHHHHHHHHhCCC
Q 002552 287 KAEFLKAVAE------NQVLVVSGETGCGKTTQLPQFILEEELSSLRG---ADCNIICTQPRRISAISVAARVSSERGEN 357 (908)
Q Consensus 287 Q~~~i~~i~~------~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~---~~~~ilv~~P~r~la~qi~~rv~~~~~~~ 357 (908)
|++.+..+.. ..++|++||.|+|||+.+ ..+...+...... .+++++.+......|
T Consensus 192 r~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~-~~La~~i~~~~v~~~l~~~~i~~l~l~~l~a-------------- 256 (852)
T TIGR03345 192 RDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVV-EGLALRIAAGDVPPALRNVRLLSLDLGLLQA-------------- 256 (852)
T ss_pred CHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHH-HHHHHHHhhCCCCccccCCeEEEeehhhhhc--------------
Q ss_pred CCCEEeEEeeccccCCCCCcEEEEchHHHHHHHhcCCCCCcceEEEEechhccc------hhhHHHHHHHHHHCccCCCC
Q 002552 358 LGETVGYQIRLESKRSAQTRLLFCTTGVLLRQLVEDPDLSCVSHLLVDEIHERG------MNEDFLLIILRDLLPRRPDL 431 (908)
Q Consensus 358 ~g~~vg~~~~~~~~~~~~~~Iiv~T~g~Ll~~l~~~~~l~~~~~iIiDEaHeR~------~~~d~ll~~lk~~~~~~~~~ 431 (908)
++...--....|...+..-..-..-.+|+|||+|... -..| ...+++-.+...
T Consensus 257 -----------------g~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d-~~n~Lkp~l~~G--- 315 (852)
T TIGR03345 257 -----------------GASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGD-AANLLKPALARG--- 315 (852)
T ss_pred -----------------ccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCcccccc-HHHHhhHHhhCC---
Q ss_pred cEEEecccCChHHHHhhh
Q 002552 432 RLILMSATINADLFSKYF 449 (908)
Q Consensus 432 qiIlmSAT~~~~~~~~~f 449 (908)
.+.+.-|| ..+.+..||
T Consensus 316 ~l~~IgaT-T~~e~~~~~ 332 (852)
T TIGR03345 316 ELRTIAAT-TWAEYKKYF 332 (852)
T ss_pred CeEEEEec-CHHHHhhhh
No 495
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=82.23 E-value=0.84 Score=51.92 Aligned_cols=47 Identities=13% Similarity=0.038 Sum_probs=0.0
Q ss_pred eEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHH
Q 002552 299 VLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSS 352 (908)
Q Consensus 299 ~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~ 352 (908)
+++|+|+||||||+.+.+|-+-.. ...++|+=|.-++....+...++
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~~-------~~s~vv~D~Kge~~~~t~~~r~~ 47 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLTW-------PGSVVVLDPKGENFELTSEHRRA 47 (384)
T ss_pred CeeEecCCCCCCccEEEccchhcC-------CCCEEEEccchhHHHHHHHHHHH
No 496
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=82.23 E-value=1.2 Score=52.20 Aligned_cols=48 Identities=27% Similarity=0.222 Sum_probs=0.0
Q ss_pred CeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHH
Q 002552 298 QVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSS 352 (908)
Q Consensus 298 ~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~ 352 (908)
.+++++|+||||||+.+.++.+-.. ...+||+=|.-++....+...++
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll~~-------~~s~iV~D~KgEl~~~t~~~r~~ 92 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLLNY-------PGSMIVTDPKGELYEKTAGYRKK 92 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHHhc-------cCCEEEEECCCcHHHHHHHHHHH
No 497
>PRK04328 hypothetical protein; Provisional
Probab=82.16 E-value=2.6 Score=44.72 Aligned_cols=52 Identities=19% Similarity=0.273 Sum_probs=0.0
Q ss_pred hCCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHH
Q 002552 296 ENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARV 350 (908)
Q Consensus 296 ~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv 350 (908)
.+..++|.|++|||||+...+++.+.+ .++..+..+-+.-+..-..+.++.+
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~---~~ge~~lyis~ee~~~~i~~~~~~~ 73 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGL---QMGEPGVYVALEEHPVQVRRNMRQF 73 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH---hcCCcEEEEEeeCCHHHHHHHHHHc
No 498
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=82.05 E-value=2 Score=41.23 Aligned_cols=116 Identities=12% Similarity=0.013 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhcccCCCCCce---EEEeccCCCChHhHHhhhCCCCCCCc---EEEEeccc--cccccCCCC--eEEEE
Q 002552 565 NDISKLLDQIKVNKFLGDPNKF---LVLPLHGSMPTINQREIFDRPPPNKR---KIVLATNI--AESSITIDD--VVYVV 634 (908)
Q Consensus 565 ~~i~~l~~~L~~~~~~~~~~~~---~v~~lH~~l~~~er~~v~~~f~~g~~---kIlvaT~i--ae~GidIp~--v~~VI 634 (908)
+.++.+++.+.+ ... ....+.-.....+..++++.|+...- .||+++.- ..+|||+|+ ++.||
T Consensus 2 ~~m~~v~~~~~~-------~~~~~~~~~i~~e~~~~~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vi 74 (142)
T smart00491 2 RYLEQVVEYWKE-------NGILEINKPVFIEGKDSGETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVI 74 (142)
T ss_pred hHHHHHHHHHHh-------cCccccCceEEEECCCCchHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEE
Q ss_pred eCCCccceeeccc-------------cCccccccccccHhhHHHhccccCCCCCcEEEEecChhhH
Q 002552 635 DCGKAKETSYDAL-------------NKLACLLPSWISKASAHQRRGRAGRVQPGVCYKLYPRIIH 687 (908)
Q Consensus 635 d~g~~k~~~yd~~-------------~~~~~l~~~~iS~~~~~QR~GRaGR~~~G~~~~l~~~~~~ 687 (908)
-.|+|--...|+. .........+-..-...|-+||.=|...=....++-..+|
T Consensus 75 i~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~Qa~GR~iR~~~D~g~i~l~D~R~ 140 (142)
T smart00491 75 IVGIPFPNPDSPILRARLEYLDEKGGIRPFDEVYLFDAMRALAQAIGRAIRHKNDYGVVVLLDKRY 140 (142)
T ss_pred EEecCCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhCccccCccceEEEEEEeccc
No 499
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=81.90 E-value=4.6 Score=50.16 Aligned_cols=124 Identities=23% Similarity=0.300 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHH--------hCCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHh
Q 002552 283 AFKMKAEFLKAVA--------ENQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSER 354 (908)
Q Consensus 283 i~~~Q~~~i~~i~--------~~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~~~ 354 (908)
....++.+++.+. .+..+++.||+|+||| ++++.++..+
T Consensus 327 ~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKT---------------------------------tl~~~ia~~l 373 (784)
T PRK10787 327 LERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKT---------------------------------SLGQSIAKAT 373 (784)
T ss_pred HHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHH---------------------------------HHHHHHHHHh
Q ss_pred CCCCCCEEeEEeeccccCCCCCcEEE-EchHHHHHHHhcCCCCCcceEEEEechhccchhh-----HHHHHHHHH-----
Q 002552 355 GENLGETVGYQIRLESKRSAQTRLLF-CTTGVLLRQLVEDPDLSCVSHLLVDEIHERGMNE-----DFLLIILRD----- 423 (908)
Q Consensus 355 ~~~~g~~vg~~~~~~~~~~~~~~Iiv-~T~g~Ll~~l~~~~~l~~~~~iIiDEaHeR~~~~-----d~ll~~lk~----- 423 (908)
+.......-..++..........-.+ ..||.+.+.+........ +|+|||+|.-+.+. +.++.++..
T Consensus 374 ~~~~~~i~~~~~~d~~~i~g~~~~~~g~~~G~~~~~l~~~~~~~~--villDEidk~~~~~~g~~~~aLlevld~~~~~~ 451 (784)
T PRK10787 374 GRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNP--LFLLDEIDKMSSDMRGDPASALLEVLDPEQNVA 451 (784)
T ss_pred CCCEEEEEcCCCCCHHHhccchhccCCCCCcHHHHHHHhcCCCCC--EEEEEChhhcccccCCCHHHHHHHHhccccEEE
Q ss_pred ----HCccCCCCcEEEecccCC
Q 002552 424 ----LLPRRPDLRLILMSATIN 441 (908)
Q Consensus 424 ----~~~~~~~~qiIlmSAT~~ 441 (908)
.+...-++--+++=||.|
T Consensus 452 ~~d~~~~~~~dls~v~~i~TaN 473 (784)
T PRK10787 452 FSDHYLEVDYDLSDVMFVATSN 473 (784)
T ss_pred EecccccccccCCceEEEEcCC
No 500
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=81.79 E-value=0.81 Score=47.33 Aligned_cols=118 Identities=21% Similarity=0.305 Sum_probs=0.0
Q ss_pred CCeEEEEecCCCCccchHHHHHHHHHHhccCCCCcEEEEEcccHHHHHHHHHHHHHHhCCCCCCEEeEEeeccccCCCCC
Q 002552 297 NQVLVVSGETGCGKTTQLPQFILEEELSSLRGADCNIICTQPRRISAISVAARVSSERGENLGETVGYQIRLESKRSAQT 376 (908)
Q Consensus 297 ~~~vii~a~TGSGKTt~~~~~il~~~~~~~~~~~~~ilv~~P~r~la~qi~~rv~~~~~~~~g~~vg~~~~~~~~~~~~~ 376 (908)
++.++++||.|+||||.+-...+...+. .+-+..|-..+....+.++...++..-...-+.
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~~~la-------~~G~~v~a~~~~~~~~d~i~~~l~~~~si~~~~------------ 89 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALIVFLA-------HIGSFVPADSATIGLVDKIFTRMSSRESVSSGQ------------ 89 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHHHHHH-------hCCCeeEcCCcEEeeeeeeeeeeCCccChhhcc------------
Q ss_pred cEEEEchHHHHHHHhcCC-CCCcceEEEEechhccchh----hHHHHHHHHHHCccCCCCcEEEecc
Q 002552 377 RLLFCTTGVLLRQLVEDP-DLSCVSHLLVDEIHERGMN----EDFLLIILRDLLPRRPDLRLILMSA 438 (908)
Q Consensus 377 ~Iiv~T~g~Ll~~l~~~~-~l~~~~~iIiDEaHeR~~~----~d~ll~~lk~~~~~~~~~qiIlmSA 438 (908)
.|-..=++.+..-- ...+-++++|||.- ++.+ ..++..+++.+........+++++.
T Consensus 90 ----S~f~~el~~l~~~l~~~~~~slvllDE~~-~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~T 151 (213)
T cd03281 90 ----SAFMIDLYQVSKALRLATRRSLVLIDEFG-KGTDTEDGAGLLIATIEHLLKRGPECPRVIVST 151 (213)
T ss_pred ----chHHHHHHHHHHHHHhCCCCcEEEecccc-CCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEc
Done!