Citrus Sinensis ID: 002554


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------91
MKHKTHPCNPVALSFISVSVFIFNLDLTCLSCNYCYLVLQILNIRCFVFCAAILTLILCVYRSIYEEGRFCDTFHVNASGWRCCESCGKRVHCGCITSVHAFTLLDAGGIECMTCARKNVLVAPTPSWPPSLFYQTPFPERIKDLSVKNWTQLAGSGPVPWRQAPSLFNSSIPQPELRPRLPYEVDLSAGIDRINASERLSVPSLEKRKLEDFSERLMNGGLKSGSRDIPENANAGSNCDMQPSSCLNKPQQSSTLKDDSSTPHFGLAVSYASPSETNSQIGVSGSHLRPVVQPPLVKQFHGNLPNGADSLGETQVRNGRPRVDARGRSQLLPRYWPRFTDQDLQQISGDSNSVITPLFEKMLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKVQDSKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQNMQLQAGDIVTFSRLEPEGKLVMGFRKASSASASDQDNEANKAGTGIPANGHAELADPSSWSKVDKSGYIATEALGAKSSISRKRKNTTLGSKSKRLKIENEDVIELKLTWEEAQGLLRPPPNNVPSVVVIEGYEFEEYEDAPILGKPTIFATDNVGEKIQWVQCEDCSKWRKVPANARLPSKWTCSGNLWDPERSVCSVAQELREEQLEDLIAPNNPASSKKLKAAKQEPDCVEALEGLDTLANLAILGEGEGLTASSQATTKHPRHRPGCSCIVCIQPPSGKGPKHKQTCTCNVCLTVKRRFHTLMLRREKKQSEKDAETSRKKQQQQKLPVPEKSADDDPLSCSKTGNNSPNEKKVVSEGSDDDSSRIKSSTSPFKGQIDLNIQPEREEELSPGSDSGSMIRLLQDATEKYLRQQRLSSSGVNTSSVDNEGLQGGVTGEKISNGITLDGSHQDTDEDHHGSLSVKASASISATG
cccccccccccEEEEEEEEEEEEEcccccccccEEEEEEEEEcccccEEEcHHHHHHHHHHHHHccccccccccccccccccccccccccEEEEEHHHHHHHHHHccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccEEEEHHHHHHHcccccccccccEEEEcccccEEEEEEEEEcccccccEEEcccHHHHHccccccccEEEEEEccccccEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccEEEEEcccccccHHcHHHHcccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccc
ccccccccccEEEEEEEEEEEEEEccccccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccHHHHccccccccccccccccEcEEEEEEHHHEEEEcccccEEHHHcccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHccccccHcccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccHHHHHHccccccHccHHHHHEEccHccccccccEEEcHHHHHHHccccccccccEEEEEcccccEEEEEEEEcccccccEEEEccccHHHHHcccccccEEEEEEcccccEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccHHHHHHHccHHHHHHHcccccccccEEEEEEccEEEEcccccEEcccEEEEEcccccccEEEEccccHHHccccccEccccccccccccccccccccccHHHccHHHHHHHccccccHHHHHHHHHccccHccccccHHHHHHHHHHccccccccccccccccccccccccEEEEEEcccccccccccccccccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccHHHccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccc
mkhkthpcnpvalSFISVSVFIFNLDltclscnyCYLVLQILNIRCFVFCAAILTLILCVYRSIyeegrfcdtfhvnasgwrccescgkrvhcgcitsvhaftlldaggiecmtcarknvlvaptpswppslfyqtpfperikdlsvknwtqlagsgpvpwrqapslfnssipqpelrprlpyevdlsagidrinaserlsvpslekrKLEDFSERLMngglksgsrdipenanagsncdmqpssclnkpqqsstlkddsstphfglavsyaspsetnsqigvsgshlrpvvqpplvkqfhgnlpngadslgetqvrngrprvdargrsqllprywprftdqdlqqisgdsnsvITPLFEKMLsasdagrigrlvlpkkcaeayfppisqpeglplkvqdskgKEWIFQFrfwpnnnsrmyvLEGVTPCiqnmqlqagdivtfsrlepegklvmgfrkassasasdqdneankagtgipanghaeladpsswskvdksgyiaTEALgakssisrkrknttlgskskrlkieNEDVIELKLTWEEaqgllrpppnnvpsvvviegyefeeyedapilgkptifatdnvgekiqwvqcedcskwrkvpanarlpskwtcsgnlwdpersVCSVAQELREEQLEdliapnnpasskklkaakqepDCVEALEGLDTLANLAIlgegegltassqattkhprhrpgcscivciqppsgkgpkhkqtctcnvcltvKRRFHTLMLRREKKQSEKDAETSRKKQqqqklpvpeksadddplscsktgnnspnekkvvsegsdddssriksstspfkgqidlniqpereeelspgsdsgSMIRLLQDATEKYLRQQrlsssgvntssvdneglqggvtgekisngitldgshqdtdedhhgslsvkasaSISATG
mkhkthpcnpvALSFISVSVFIFNLDLTCLSCNYCYLVLQILNIRCFVFCAAILTLILCVYRSIYEEGRFCDTFHVNASGWRCCESCGKRVHCGCITSVHAFTLLDAGGIECMTCARKNVLVAPTPSWPPSLFYQTPFPERIKDLSVKNWTQLAGSGPVPWRQAPSLFnssipqpelrPRLPYEVDLSAGIdrinaserlsvpslekrkledFSERLmngglksgsrdiPENANAGSNCDMQPSSCLNKPQQSSTLKDDSSTPHFGLAVSYASPSETNSQIGVSGSHLRPVVQPPLVKQFHGNLPngadslgetqvrngrprvdargrsqllprywPRFTDQDLQQISGDSNSVITPLFEKMLSASDAGRIGRLVLPKKCAEAyfppisqpeglPLKVQDSKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQNMQLQAGDIVTFSRLEPEGKLVMGFRKAssasasdqdneaNKAGTGIPANGHAELADPSSWSKVDKSGYIATealgakssisrkrknttlgskskrlkienedvIELKLTWeeaqgllrpppnnvpsVVVIEGYEFEEYEDAPILGKPTIFATDNVGEKIQWVQCEDCSKWrkvpanarlpskwtcsgnlwdpeRSVCSVAQELREEQLedliapnnpasskklKAAKQEPDCVEALEGLDTLANLAILGEGEGLTASSQATTKHPRHRPGCSCIVCIQPpsgkgpkhkqtctcnvcltvkRRFHTLMLrrekkqsekdaetsrkkqqqqklpvpeksadddplscsktgnnspnekkvvsegsdddssriksstspfkgqidlniqpereeelspgsdsgSMIRLLQDATEKYLRQQRlsssgvntssvdneglqggvTGEKISNGITLDGSHQdtdedhhgslsvkasasisatg
MKHKTHPCNPVALSFISVSVFIFNLDLTCLSCNYCYLVLQILNIRCFVFCAAILTLILCVYRSIYEEGRFCDTFHVNASGWRCCESCGKRVHCGCITSVHAFTLLDAGGIECMTCARKNVLVAPTPSWPPSLFYQTPFPERIKDLSVKNWTQLAGSGPVPWRQAPSLFNSSIPQPELRPRLPYEVDLSAGIDRINASERLSVPSLEKRKLEDFSERLMNGGLKSGSRDIPENANAGSNCDMQPSSCLNKPQQSSTLKDDSSTPHFGLAVSYASPSETNSQIGVSGSHLRPVVQPPLVKQFHGNLPNGADSLGETQVRNGRPRVDARGRSQLLPRYWPRFTDQDLQQISGDSNSVITPLFEKMLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKVQDSKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQNMQLQAGDIVTFSRLEPEGKLVMGFRKASSASASDQDNEANKAGTGIPANGHAELADPSSWSKVDKSGYIATEALGAKSSISRKRKNTTLGSKSKRLKIENEDVIELKLTWEEAQGLLRpppnnvpsvvvIEGYEFEEYEDAPILGKPTIFATDNVGEKIQWVQCEDCSKWRKVPANARLPSKWTCSGNLWDPERSVCSVAQELREEQLEDLIAPNNPASSKKLKAAKQEPDCVEALEGLDTLANLAILGEGEGLTASSQATTKHPRHRPGCSCIVCIQPPSGKGPKHKQTCTCNVCLTVKRRFHTLMLRREKKQSEKDAETSRKKQQQQKLPVPEKSADDDPLSCSKTGNNSPNEKKVVSEGSDDDSSRIKSSTSPFKGQIDLNIQPEREEELSPGSDSGSMIRLLQDATEKYLRQQRLSSSGVNTSSVDNEGLQGGVTGEKISNGITLDGSHQDTDEDHHGSLSVKASASISATG
*******CNPVALSFISVSVFIFNLDLTCLSCNYCYLVLQILNIRCFVFCAAILTLILCVYRSIYEEGRFCDTFHVNASGWRCCESCGKRVHCGCITSVHAFTLLDAGGIECMTCARKNVLVAPTPSWPPSLFYQTPFPERIKDLSVKNWTQLAGSGPVPWR************************************************************************************************************************************************************************LLPRYWPRFTDQDLQQI****NSVITPLFEKMLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKVQDSKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQNMQLQAGDIVTFSRLEPEGKLV*******************************************************************************EDVIELKLTWEEAQGLLRPPPNNVPSVVVIEGYEFEEYEDAPILGKPTIFATDNVGEKIQWVQCEDCSKWRKVPANARLPSKWTCSGNLWDPERSVCSV********************************CVEALEGLDTLANLAILGE*******************GCSCIVCIQ*********KQTCTCNVCLTVKRRFHTLML************************************************************************************************************************************************************************
********NPVALSFISVSVFIFNLDLTCLSCNYCYLVLQILNIRCFVFCAAILTLILCVYRSIYEEGRFCDTFHVNASGWRCCESCGKRVHCGCITSVHAFTLLDAGGIECMTCARKNVL********************************************************************************************************************************************************************************************************************************************LFEKMLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKVQDSKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQNMQLQAGDIVTFSRLEPEGKLVMGF*****************************LADPSSWSKVDK********************************IENEDVIE*********************************************ATDNVGEKIQWVQCEDCSKWRKVPANARLPSKWTCSGNLWDP***********************************************************************************************************************************************************************************************************************DAT******************************************************************
MKHKTHPCNPVALSFISVSVFIFNLDLTCLSCNYCYLVLQILNIRCFVFCAAILTLILCVYRSIYEEGRFCDTFHVNASGWRCCESCGKRVHCGCITSVHAFTLLDAGGIECMTCARKNVLVAPTPSWPPSLFYQTPFPERIKDLSVKNWTQLAGSGPVPWRQAPSLFNSSIPQPELRPRLPYEVDLSAGIDRINASERLSVPSLEKRKLEDFSERLMNGGLKSGSRDIPENANAGSNCD*********************TPHFGLAVSYASPSETNSQIGVSGSHLRPVVQPPLVKQFHGNLPNGADSLGETQVRNGRPRVDARGRSQLLPRYWPRFTDQDLQQISGDSNSVITPLFEKMLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKVQDSKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQNMQLQAGDIVTFSRLEPEGKLVMGF*****************AGTGIPANGHAELADPSSWSKVDKSGYIATEALGAKSSISRKRKNTTLGSKSKRLKIENEDVIELKLTWEEAQGLLRPPPNNVPSVVVIEGYEFEEYEDAPILGKPTIFATDNVGEKIQWVQCEDCSKWRKVPANARLPSKWTCSGNLWDPERSVCSVAQELREEQLEDLIAPNNPA***********PDCVEALEGLDTLANLAILGEGEGL**************PGCSCIVCIQPP*********TCTCNVCLTVKRRFHTLMLR*******************************************************************FKGQIDLNIQPE***********GSMIRLLQDATEKYLRQ*************DNEGLQGGVTGEKISNGITLDGS************************
*****HPCNPVALSFISVSVFIFNLDLTCLSCNYCYLVLQILNIRCFVFCAAILTLILCVYRSIYEEGRFCDTFHVNASGWRCCESCGKRVHCGCITSVHAFTLLDAGGIECMTCARKNVLVAPT****PSLFYQTP********SVKNW*****SGPVPWRQAPSLFNSSIPQPELRPR************R****E*LSV*********DFSE*L******S**********************************************************************************************************LLPRYWPRFTDQDL*QISGDSNSVITPLFEKMLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKVQDSKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQNMQLQAGDIVTFSRLEPEGKLVMGFRKAS****************************************************************SKRLKIENEDVIELKLTWEEAQGLLRPPPNNVPSVVVIEGYEFEEYEDAPILGKPTIFATDNVGEKIQWVQCEDCSKWRKVPANARLPSKWTCSGNLWDPERSVCSVAQELREEQLEDLIAPNNPASSKKLK************EGLDTLANLAILGE*****************RPGCSCIVCIQPPSGKGPKHKQTCTCNVCLTVKRRFHTLMLRREKKQ*****************************************************************QI***IQPERE******SDSGSMIRLLQDATEKYLRQQRL*********************************************************
ooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MKHKTHPCNPVALSFISVSVFIFNLDLTCLSCNYCYLVLQILNIRCFVFCAAILTLILCVYRSIYEEGRFCDTFHVNASGWRCCESCGKRVHCGCITSVHAFTLLDAGGIECMTCARKNVLVAPTPSWPPSLFYQTPFPERIKDLSVKNWTQLAGSGPVPWRQAPSLFNSSIPQPELRPRLPYEVDLSAGIDRINASERLSVPSLEKRKLEDFSERLMNGGLKSGSRDIPENANAGSNCDMQPSSCLNKPQQSSTLKDDSSTPHFGLAVSYASPSETNSQIGVSGSHLRPVVQPPLVKQFHGNLPNGADSLGETQVRNGRPRVDARGRSQLLPRYWPRFTDQDLQQISGDSNSVITPLFEKMLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKVQDSKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQNMQLQAGDIVTFSRLEPEGKLVMGFRKASSASASDQDNEANKAGTGIPANGHAELADPSSWSKVDKSGYIATEALGAKSSISRKRKNTTLGSKSKRLKIENEDVIELKLTWEEAQGLLRPPPNNVPSVVVIEGYEFEEYEDAPILGKPTIFATDNVGEKIQWVQCEDCSKWRKVPANARLPSKWTCSGNLWDPERSVCSVAQELREEQLEDLIAPNNPASSKKLKAAKQEPDCVEALEGLDTLANLAILGEGEGLTASSQATTKHPRHRPGCSCIVCIQPPSGKGPKHKQTCTCNVCLTVKRRFHTLMLRxxxxxxxxxxxxxxxxxxxxxLPVPEKSADDDPLSCSKTGNNSPNEKKVVSEGSDDDSSRIKSSTSPFKGQIDLNIQPEREEELSPGSDSGSMIRLLQDATEKYLRQQRLSSSGVNTSSVDNEGLQGGVTGEKISNGITLDGSHQDTDEDHHGSLSVKASASISATG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query908 2.2.26 [Sep-21-2011]
Q0D5G4955 B3 domain-containing prot yes no 0.831 0.790 0.502 0.0
Q8W4L5790 B3 domain-containing tran yes no 0.741 0.851 0.422 1e-142
Q5CCK4780 B3 domain-containing tran no no 0.577 0.671 0.464 1e-140
Q6Z3U3949 B3 domain-containing prot no no 0.568 0.543 0.479 1e-135
O65420713 B3 domain-containing tran no no 0.533 0.678 0.444 1e-108
Q7XKC4438 Putative B3 domain-contai no no 0.117 0.244 0.444 1e-18
Q7XKC5433 B3 domain-containing prot no no 0.112 0.235 0.456 5e-18
Q9LW31313 B3 domain-containing tran no no 0.123 0.357 0.407 5e-18
Q6Z1Z3362 B3 domain-containing prot no no 0.112 0.281 0.407 1e-15
A4LBC0402 B3 domain-containing prot no no 0.118 0.268 0.381 2e-15
>sp|Q0D5G4|Y7633_ORYSJ B3 domain-containing protein Os07g0563300 OS=Oryza sativa subsp. japonica GN=Os07g0563300 PE=2 SV=2 Back     alignment and function desciption
 Score =  748 bits (1931), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 427/850 (50%), Positives = 539/850 (63%), Gaps = 95/850 (11%)

Query: 65  YEEGRFCDTFHVNASGWRCCESCGKRVHCGCITSVHAFTLLDAGGIECMTCARK-NVLVA 123
           +E G FC+TFH+  +GWR CESCGKR+HCGCI SVHAF  LDAGG+EC+ CARK +  +A
Sbjct: 119 FEHGGFCETFHLEVAGWRNCESCGKRLHCGCIVSVHAFVHLDAGGVECVMCARKSHAAMA 178

Query: 124 PTPSWPPSLFYQTPFPERIKDLSVKNWTQLAGSGPVPWRQAPSLFNSSIPQPELRPRLPY 183
           P+  W  S+       +R KD  VK+W   AG     WRQ  ++++ S  Q +L+ RL +
Sbjct: 179 PSQIWSSSMHMAQNVADR-KDNFVKSWRPPAGQFSSQWRQN-NMWSMSTMQSDLQQRLAF 236

Query: 184 EVDLSAGIDRINASERLSVPSLEKRKLEDFS--------------ERLMNGGLKSGSRD- 228
           E D  +G +++    R  + + EK K +D                ER  NG  +  + D 
Sbjct: 237 EFDRPSGSEKLLPG-RTFIHAHEK-KFDDMHDRSTTPAGMNQIMRERYANGHTQHTTLDP 294

Query: 229 ----------------IPENANAGSN-------------CDMQPSSCLNKPQQSSTLKDD 259
                              + +AG N             C    ++        S LKDD
Sbjct: 295 TYAYTLYHREGTNPNLHDHSHHAGENDHLTARKGVTSDPCSSVSTTFKLDSHHPSILKDD 354

Query: 260 SSTPHFGLAVSYASPSETNSQIGVSGSHLRP-VVQPPLVKQFHGNLPNGADSLGETQVRN 318
            S    GL+ +++S +     I +  +  +  +    L KQF+ +  +  D+  + Q+RN
Sbjct: 355 PSAVPAGLSSNFSSANGPKDHIRIGPTQQQQQMASSSLQKQFYSH--SVIDNDFQAQLRN 412

Query: 319 GRPRVDARGRSQLLPRYWPRFTDQDLQQISGDSNSVITPLFEKMLSASDAGRIGRLVLPK 378
           GRPR+DA+ RSQLLPRYWPR TDQ+LQ +SGDSNSVITPLFEKMLSASDAGRIGRLVLPK
Sbjct: 413 GRPRMDAKARSQLLPRYWPRITDQELQHLSGDSNSVITPLFEKMLSASDAGRIGRLVLPK 472

Query: 379 KCAEAYFPPISQPEGLPLKVQDSKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQNMQLQAG 438
           KCAEAYFP ISQ EGLPLKVQD+ GKEW+FQFRFWPNNNSRMYVLEGVTPCIQ+MQLQAG
Sbjct: 473 KCAEAYFPAISQAEGLPLKVQDATGKEWVFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAG 532

Query: 439 DIVTFSRLEPEGKLVMGFRKASSASASDQDNEANKAGTGIP---ANGHAELADPS----- 490
           D VTFSR++PEGKLVMGFRKA++ SA +QD     A   +P   AN    + D S     
Sbjct: 533 DTVTFSRIDPEGKLVMGFRKATNLSA-EQDQPTKPANGVLPPPEANNKVVVPDSSPNAAV 591

Query: 491 -------------------SWSKVDKSGYIATEALGAKSS--ISRKRKNTTLGSKSKRLK 529
                              +  K+DK      E  G  SS  +  KRK T++G K KR  
Sbjct: 592 PRPIKVNTESKSSSPVEQATACKIDKGALPQKEGPGTSSSSPLPVKRKATSVGPKIKRFH 651

Query: 530 IENEDVIELKLTWEEAQGLLRPPPNNVPSVVVIEGYEFEEYEDAPILGKPTIFATDNVGE 589
           +++E+ +ELK+TWEEAQ LLRPPP   PS+VV++G+EFEEYE+ PILG+ T F TD  GE
Sbjct: 652 MDSEESMELKITWEEAQELLRPPP-KAPSIVVVDGHEFEEYEEPPILGRRTYFVTDQSGE 710

Query: 590 KIQWVQCEDCSKWRKVPANARLPSKWTCSGNLWDPERSVCSVAQELREEQLEDLIAPNNP 649
             QW QCEDCSKWRK+P +A LPSKWTCS N WD ERS C  AQE+  E+L ++I P  P
Sbjct: 711 NHQWAQCEDCSKWRKLPVDALLPSKWTCSDNKWDSERSSCDSAQEINMEELGEMI-PIKP 769

Query: 650 ASSKKLKAAKQEPDCVEALEGLDTLANLAILGEGEGLTASSQATTKHPRHRPGCSCIVCI 709
            ++KK K  K + D ++  +GLDTLANLAILGEGE L   SQ TT+HPRHRPGCSCIVCI
Sbjct: 770 GAAKKTK-GKVDTDNIDVSDGLDTLANLAILGEGESL--PSQPTTRHPRHRPGCSCIVCI 826

Query: 710 QPPSGKGPKHKQTCTCNVCLTVKRRFHTLMLRREKK-QSEKDAETSRKKQQ-QQKLPVPE 767
           QPPSGKGPKHKQTCTCNVC+TV+RRF TLM+RREK+ QSEKD+   RK++  Q   PVP+
Sbjct: 827 QPPSGKGPKHKQTCTCNVCMTVRRRFRTLMMRREKRQQSEKDSGVPRKREPGQSSEPVPQ 886

Query: 768 KSADDDPLSCSKTGNNSPNEKKVVS-EGSDDDSSRIKSSTSPFKGQIDLNIQPEREEELS 826
             +   P S S     SP+++   + EG +D S   K ++SP K QIDLN QPERE+E S
Sbjct: 887 SGSGAHPTSTS-----SPHQRADTNGEGPEDMSIDNKRTSSPVKNQIDLNSQPEREDEQS 941

Query: 827 PGSDSGSMIR 836
           P SD+  ++R
Sbjct: 942 PKSDATRLLR 951





Oryza sativa subsp. japonica (taxid: 39947)
>sp|Q8W4L5|VAL1_ARATH B3 domain-containing transcription repressor VAL1 OS=Arabidopsis thaliana GN=VAL1 PE=1 SV=1 Back     alignment and function description
>sp|Q5CCK4|VAL2_ARATH B3 domain-containing transcription repressor VAL2 OS=Arabidopsis thaliana GN=VAL2 PE=2 SV=1 Back     alignment and function description
>sp|Q6Z3U3|Y7797_ORYSJ B3 domain-containing protein Os07g0679700 OS=Oryza sativa subsp. japonica GN=Os07g0679700 PE=2 SV=1 Back     alignment and function description
>sp|O65420|VAL3_ARATH B3 domain-containing transcription factor VAL3 OS=Arabidopsis thaliana GN=VAL3 PE=4 SV=3 Back     alignment and function description
>sp|Q7XKC4|Y4765_ORYSJ Putative B3 domain-containing protein Os04g0676650 OS=Oryza sativa subsp. japonica GN=Os04g0676650 PE=3 SV=2 Back     alignment and function description
>sp|Q7XKC5|IDEFH_ORYSJ B3 domain-containing protein Os04g0676600 OS=Oryza sativa subsp. japonica GN=Os04g0676600 PE=2 SV=1 Back     alignment and function description
>sp|Q9LW31|FUS3_ARATH B3 domain-containing transcription factor FUS3 OS=Arabidopsis thaliana GN=FUS3 PE=2 SV=2 Back     alignment and function description
>sp|Q6Z1Z3|IDEF1_ORYSJ B3 domain-containing protein IDEF1 OS=Oryza sativa subsp. japonica GN=IDEF1 PE=2 SV=1 Back     alignment and function description
>sp|A4LBC0|LFL1_ORYSJ B3 domain-containing protein LFL1 OS=Oryza sativa subsp. japonica GN=LFL1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query908
449433878896 PREDICTED: B3 domain-containing protein 0.925 0.937 0.7 0.0
224076806918 predicted protein [Populus trichocarpa] 0.910 0.900 0.702 0.0
449479362899 PREDICTED: LOW QUALITY PROTEIN: B3 domai 0.928 0.937 0.696 0.0
255560846854 transcription factor, putative [Ricinus 0.888 0.944 0.714 0.0
357446313888 B3 domain-containing transcription repre 0.908 0.929 0.684 0.0
356549413855 PREDICTED: B3 domain-containing protein 0.887 0.942 0.662 0.0
356549411889 PREDICTED: B3 domain-containing protein 0.912 0.932 0.663 0.0
356555034854 PREDICTED: B3 domain-containing protein 0.881 0.936 0.663 0.0
224116220842 predicted protein [Populus trichocarpa] 0.716 0.773 0.711 0.0
302144200601 unnamed protein product [Vitis vinifera] 0.605 0.915 0.727 0.0
>gi|449433878|ref|XP_004134723.1| PREDICTED: B3 domain-containing protein Os07g0563300-like [Cucumis sativus] Back     alignment and taxonomy information
 Score = 1209 bits (3127), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 595/850 (70%), Positives = 693/850 (81%), Gaps = 10/850 (1%)

Query: 63  SIYEEGRFCDTFHVNASGWRCCESCGKRVHCGCITSVHAFTLLDAGGIECMTCARKNVLV 122
           S YEEGRFC+TFH+NASGWRCCESCGKRVHCGCI S HAFTLLD GGIECMTCARKNV++
Sbjct: 53  SAYEEGRFCETFHLNASGWRCCESCGKRVHCGCIVSAHAFTLLDPGGIECMTCARKNVIL 112

Query: 123 APTPSWPPSLFYQTPFPERIKDLSVKNWTQLAGSGPVPWRQAPSLFNSSIPQPELRPRLP 182
              P+WPPSL + +  P+R+K+LSVKNW+QLAGSGPVPWRQAPS+FNSS+P  EL  R P
Sbjct: 113 PLNPAWPPSLLFHSALPDRLKELSVKNWSQLAGSGPVPWRQAPSMFNSSLPSGELHHRAP 172

Query: 183 YEVDLSAGIDRINASERLSVPSLEKRKLEDFSERLMNGGLKS-GSRDIPENANAGSNCDM 241
           YEVD+SA ++++N SERL V SLEKRK EDFSER +NG LK  GS  +      G  CD 
Sbjct: 173 YEVDISAALNKLNTSERLPV-SLEKRKNEDFSERFLNGSLKPCGSVLV---VMRGIKCDD 228

Query: 242 QPSSCLNKPQQSSTLKDDSSTPHFGLAVSYASPSETNSQIGVSGSHLRPVVQPPLVKQFH 301
           +PSSC N P+QSS +K+DSST  +GL + YA P+E +++  +SG+HLRP     L KQ H
Sbjct: 229 KPSSCSNMPKQSSFVKEDSSTMQYGLNIPYAPPNEPSARGRISGTHLRPTPLSSLPKQIH 288

Query: 302 GNLPNGADSLGETQVRNGRPRVDARGRSQLLPRYWPRFTDQDLQQISGDSNSVITPLFEK 361
            NL NGADS  ETQ+RNGRPR ++RG++ LLPRYWPRFTDQ+LQQIS DSNSVITPLFEK
Sbjct: 289 TNLQNGADSSNETQLRNGRPRGESRGKNYLLPRYWPRFTDQELQQISVDSNSVITPLFEK 348

Query: 362 MLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKVQDSKGKEWIFQFRFWPNNNSRMY 421
           MLSASDAGRIGRLVLPKKCAEAYFP ISQPEGLPLKVQD+KGKEWIFQFRFWPNNNSRMY
Sbjct: 349 MLSASDAGRIGRLVLPKKCAEAYFPSISQPEGLPLKVQDAKGKEWIFQFRFWPNNNSRMY 408

Query: 422 VLEGVTPCIQNMQLQAGDIVTFSRLEPEGKLVMGFRKASSASASDQDNEANKAGTGIPAN 481
           VLEGVTPCIQ+MQLQAGD VTFSRLEPEGKLVMGFRKAS  + +DQ+NE NK   G P +
Sbjct: 409 VLEGVTPCIQSMQLQAGDTVTFSRLEPEGKLVMGFRKAS--ATADQENETNKTKNGAPVH 466

Query: 482 GHAELADPSSWSKVDKSGYIATEALGAKSSISRKRKNTTLGSKSKRLKIENEDVIELKLT 541
           G AELADP+SW+KVDKSGYIA E LGAK SISRKRKN+TLGSKSKRL+I+NED+IELK+T
Sbjct: 467 GDAELADPNSWTKVDKSGYIAKEVLGAKPSISRKRKNSTLGSKSKRLRIDNEDMIELKIT 526

Query: 542 WEEAQGLLRPPPNNVPSVVVIEGYEFEEYEDAPILGKPTIFATDNVGEKIQWVQCEDCSK 601
           WEEAQGLLRPPPN VP+++VIEG+EFE YE+AP+LGKP+I   DN GE+IQW QCEDC K
Sbjct: 527 WEEAQGLLRPPPNQVPNILVIEGFEFEAYEEAPVLGKPSIIPPDNTGERIQWTQCEDCLK 586

Query: 602 WRKVPANARLPSKWTCSGNLWDPERSVCSVAQELREEQLEDLIAPNNP-ASSKKLKAAKQ 660
           WRK+PA+A LPSKWTCS N W+PERS CS  QEL  EQLE+L++P N  A  KK+KAAK 
Sbjct: 587 WRKLPASALLPSKWTCSDNSWEPERSFCSAPQELSTEQLEELLSPGNSVAPVKKMKAAKL 646

Query: 661 EPDCVEALEGLDTLANLAILGEGEGLTASSQATTKHPRHRPGCSCIVCIQPPSGKGPKHK 720
           EPD VEALEGLDTLANLAILGEGE      QATTKHPRHRPGCSCIVCIQPPSGKGPKHK
Sbjct: 647 EPDNVEALEGLDTLANLAILGEGEASQTPGQATTKHPRHRPGCSCIVCIQPPSGKGPKHK 706

Query: 721 QTCTCNVCLTVKRRFHTLMLRREKKQSEKDAETSRKKQQQQKLPVPEKSADDDPLSCSKT 780
           QTCTCNVCLTVKRRF TLMLRREKKQ EK+AET R++ + Q    P++S D++ L+CS T
Sbjct: 707 QTCTCNVCLTVKRRFRTLMLRREKKQFEKEAETMRQRHKFQDEMFPDRSMDEESLTCSNT 766

Query: 781 GNNSPNEKKVVSEGSDDDSSRIKSSTSPFKGQIDLNIQPEREEELSPGSDSGSMIRLLQD 840
             +   E+  +++GSD+D +R K STSPFKGQIDLN+QPEREEELSPGSDSGSM+++LQD
Sbjct: 767 STSKLMEEGKMNDGSDEDPNRNKPSTSPFKGQIDLNMQPEREEELSPGSDSGSMMKMLQD 826

Query: 841 ATEKYLRQQRLSSSGVNTSSVD--NEGLQGGVTGEKISNGITLDGSHQDTDEDHHGSLSV 898
             +++L QQR +S G  +SS D    G +    GE  SN I L  ++ D D+DH  +LS+
Sbjct: 827 TGDRFLEQQRSNSGGTRSSSSDPLEPGGEREHKGESSSNVIDLSSNNLDADKDHPATLSL 886

Query: 899 KASASISATG 908
             SAS+S TG
Sbjct: 887 NPSASMSTTG 896




Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224076806|ref|XP_002305001.1| predicted protein [Populus trichocarpa] gi|222847965|gb|EEE85512.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449479362|ref|XP_004155579.1| PREDICTED: LOW QUALITY PROTEIN: B3 domain-containing protein Os07g0563300-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|255560846|ref|XP_002521436.1| transcription factor, putative [Ricinus communis] gi|223539335|gb|EEF40926.1| transcription factor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|357446313|ref|XP_003593434.1| B3 domain-containing transcription repressor VAL2 [Medicago truncatula] gi|355482482|gb|AES63685.1| B3 domain-containing transcription repressor VAL2 [Medicago truncatula] Back     alignment and taxonomy information
>gi|356549413|ref|XP_003543088.1| PREDICTED: B3 domain-containing protein Os07g0563300-like isoform 2 [Glycine max] Back     alignment and taxonomy information
>gi|356549411|ref|XP_003543087.1| PREDICTED: B3 domain-containing protein Os07g0563300-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|356555034|ref|XP_003545844.1| PREDICTED: B3 domain-containing protein Os07g0563300-like [Glycine max] Back     alignment and taxonomy information
>gi|224116220|ref|XP_002317242.1| predicted protein [Populus trichocarpa] gi|222860307|gb|EEE97854.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|302144200|emb|CBI23327.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query908
TAIR|locus:2116592780 HSL1 "HSI2-like 1" [Arabidopsi 0.541 0.630 0.502 1.6e-151
TAIR|locus:2064417790 HSI2 "high-level expression of 0.674 0.774 0.429 1.7e-143
TAIR|locus:2088439313 FUS3 "FUSCA 3" [Arabidopsis th 0.122 0.354 0.412 1.6e-16
TAIR|locus:2039165244 ABS2 "ABNORMAL SHOOT 2" [Arabi 0.135 0.504 0.382 3.3e-15
UNIPROTKB|Q6Z1Z3362 IDEF1 "B3 domain-containing pr 0.208 0.522 0.326 4.1e-15
UNIPROTKB|Q7XKC5433 LOC_Os04g58000 "B3 domain-cont 0.112 0.235 0.456 5.2e-15
UNIPROTKB|A4LBC0402 LFL1 "B3 domain-containing pro 0.237 0.537 0.293 3.1e-14
TAIR|locus:2032170363 LEC2 "LEAFY COTYLEDON 2" [Arab 0.198 0.495 0.308 2.8e-13
TAIR|locus:2093166720 ABI3 "AT3G24650" [Arabidopsis 0.170 0.215 0.331 3e-13
TAIR|locus:2164215282 DPA4 "DEVELOPMENT-RELATED PcG 0.186 0.599 0.293 1.9e-12
TAIR|locus:2116592 HSL1 "HSI2-like 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1260 (448.6 bits), Expect = 1.6e-151, Sum P(3) = 1.6e-151
 Identities = 259/515 (50%), Positives = 341/515 (66%)

Query:   275 SETNS--QIGVSGSHL--RPVVQPPLVKQFHGNLPNGADSLGETQVRNGRPRVDARGRSQ 330
             S+TNS  Q+      L  +P    P+     G  P+G  SL  +Q+   RP  + RG++Q
Sbjct:   200 SKTNSIFQLAPRSRQLLPKPANSAPIAA---GMEPSG--SL-VSQIHVARPPPEGRGKTQ 253

Query:   331 LLPRYWPRFTDQDLQQISGD----SNSVITPLFEKMLSASDAGRIGRLVLPKKCAEAYFP 386
             LLPRYWPR TDQ+L Q+SG     SNS I PLFEK+LSASDAGRIGRLVLPK CAEAYFP
Sbjct:   254 LLPRYWPRITDQELLQLSGQYPHLSNSKIIPLFEKVLSASDAGRIGRLVLPKACAEAYFP 313

Query:   387 PISQPEGLPLKVQDSKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQNMQLQAGDIVTFSRL 446
             PIS PEGLPLK+QD KGKEW+FQFRFWPNNNSRMYVLEGVTPCIQ+MQLQAGD VTFSR 
Sbjct:   314 PISLPEGLPLKIQDIKGKEWVFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRT 373

Query:   447 EPEGKLVMGFRKASSASASDQDNEANKAGTGIPANGHAELADPSSWSKVDKSGYIATEAL 506
             EPEGKLVMG+RKA++++A+     +++    + +N         +WSK++KS  +A + L
Sbjct:   374 EPEGKLVMGYRKATNSTATQMFKGSSEPNLNMFSNSLNPGCGDINWSKLEKSEDMAKDNL 433

Query:   507 GAKSSISRKRKNT-TLGSKSKRLKIENEDVIELKLTWEEAQGLLRXXXXXXXXXXXIEGY 565
               +SS++  RK    +G+KSKRL I++ DV+ELK+TWEEAQ LLR           +E  
Sbjct:   434 FLQSSLTSARKRVRNIGTKSKRLLIDSVDVLELKITWEEAQELLRPPQSTKPSIFTLENQ 493

Query:   566 EFEEYEDAPILGKPTIFATDNVGEKIQWVQCEDCSKWRKVPANARLPSKWTCSGNLWDPE 625
             +FEEY++ P+ GK T+F +   GE+ QWVQC+ C KWR++P +  LP KW+CS NL DP 
Sbjct:   494 DFEEYDEPPVFGKRTLFVSRQTGEQEQWVQCDACGKWRQLPVDILLPPKWSCSDNLLDPG 553

Query:   626 RSVCSVAQELREEQLEDLIAPNNPASSKKLKAAKQEPDCVEALEGLDTLANLAILGEGEG 685
             RS CS   EL   + + L+  +     ++L ++ ++ +  +    L++L N  I   GE 
Sbjct:   554 RSSCSAPDELSPREQDTLVRQSKEFKRRRLASSNEKLNQSQDASALNSLGNAGITTTGEQ 613

Query:   686 LTASSQATTKHPRHRPGCSCIVCIQPPSGKGPKHKQTCTCNVCLTVKRRFHTLMLRREKK 745
                +  ATTKHPRHR GCSCIVC QPPSGKG KHK +CTC VC  VKRRF TLMLR+  K
Sbjct:   614 GEITVAATTKHPRHRAGCSCIVCSQPPSGKG-KHKPSCTCTVCEAVKRRFRTLMLRKRNK 672

Query:   746 ----QSEKDAETS---RKKQQQQKLPVPEKSADDD 773
                 Q+ + A++    R + + + +P  E +A ++
Sbjct:   673 GEAGQASQQAQSQSECRDETEVESIPAVELAAGEN 707


GO:0005634 "nucleus" evidence=ISM
GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;RCA;TAS
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS
GO:0010030 "positive regulation of seed germination" evidence=IGI
GO:2000034 "regulation of seed maturation" evidence=IGI
GO:0007062 "sister chromatid cohesion" evidence=RCA
GO:0009630 "gravitropism" evidence=RCA
GO:0009790 "embryo development" evidence=RCA
GO:0009880 "embryonic pattern specification" evidence=RCA
GO:0010072 "primary shoot apical meristem specification" evidence=RCA
GO:0010162 "seed dormancy process" evidence=RCA
GO:0010431 "seed maturation" evidence=RCA
GO:0010564 "regulation of cell cycle process" evidence=RCA
GO:0043687 "post-translational protein modification" evidence=RCA
GO:0045595 "regulation of cell differentiation" evidence=RCA
GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA
GO:0048316 "seed development" evidence=RCA
GO:0048366 "leaf development" evidence=RCA
GO:0048825 "cotyledon development" evidence=RCA
GO:0051301 "cell division" evidence=RCA
GO:0005515 "protein binding" evidence=IPI
TAIR|locus:2064417 HSI2 "high-level expression of sugar-inducible gene 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2088439 FUS3 "FUSCA 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2039165 ABS2 "ABNORMAL SHOOT 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q6Z1Z3 IDEF1 "B3 domain-containing protein IDEF1" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|Q7XKC5 LOC_Os04g58000 "B3 domain-containing protein Os04g0676600" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|A4LBC0 LFL1 "B3 domain-containing protein LFL1" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2032170 LEC2 "LEAFY COTYLEDON 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2093166 ABI3 "AT3G24650" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2164215 DPA4 "DEVELOPMENT-RELATED PcG TARGET IN THE APEX 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q0D5G4Y7633_ORYSJNo assigned EC number0.50230.83140.7905yesno

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
eugene3.00040219
hypothetical protein (918 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query908
cd1001798 cd10017, B3_DNA, Plant-specific B3-DNA binding dom 8e-22
pfam0236297 pfam02362, B3, B3 DNA binding domain 1e-19
smart0101996 smart01019, B3, B3 DNA binding domain 5e-17
pfam0749650 pfam07496, zf-CW, CW-type Zinc Finger 8e-12
cd10015109 cd10015, BfiI_C_EcoRII_N_B3, DNA binding domains o 3e-08
>gnl|CDD|197383 cd10017, B3_DNA, Plant-specific B3-DNA binding domain Back     alignment and domain information
 Score = 90.5 bits (225), Expect = 8e-22
 Identities = 34/102 (33%), Positives = 54/102 (52%), Gaps = 4/102 (3%)

Query: 357 PLFEKMLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKVQDSKGKEWIFQFRFWPNN 416
           PLF K+L+ SD   +GRLVLPKK A+A+ PP    EG+ + ++D  GK+W  + +   N+
Sbjct: 1   PLFFKVLTPSDVSSLGRLVLPKKFAKAHLPP---KEGVEVTLEDPDGKKWTVKLKKRKNS 57

Query: 417 NSRMYVLEGVTPCIQNMQLQAGDIVTFSRLEPEGKLVMGFRK 458
             RM +  G    ++   L+ GD + F       K  +   +
Sbjct: 58  G-RMVLSGGWKEFVRANGLKEGDFLVFELDGRNSKFKVRIFR 98


The plant-specific B3 DNA binding domain superfamily includes the well-characterized auxin response factor (ARF) and the LAV (Leafy cotyledon2 [LEC2]-Abscisic acid insensitive3 [ABI3]-VAL) families, as well as the RAV (Related to ABI3 and VP1) and REM (REproductive Meristem) families. LEC2 and ABI3 have been shown to be involved in seed development, while other members of the LAV family seem to have a more general role, being expressed in many organs during plant development. Members of the ARF family bind to the auxin response element and depending on presence of an activation or repression domain, they activate or repress transcription. RAV and REM families are less studied B3 protein famillies. Length = 98

>gnl|CDD|216995 pfam02362, B3, B3 DNA binding domain Back     alignment and domain information
>gnl|CDD|214977 smart01019, B3, B3 DNA binding domain Back     alignment and domain information
>gnl|CDD|219431 pfam07496, zf-CW, CW-type Zinc Finger Back     alignment and domain information
>gnl|CDD|197381 cd10015, BfiI_C_EcoRII_N_B3, DNA binding domains of BfiI, EcoRII and plant B3 proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 908
PF02362100 B3: B3 DNA binding domain; InterPro: IPR003340 Two 99.64
PF0749650 zf-CW: CW-type Zinc Finger; InterPro: IPR011124 Zi 99.56
PF09217156 EcoRII-N: Restriction endonuclease EcoRII, N-termi 97.8
PF03754114 DUF313: Domain of unknown function (DUF313) ; Inte 97.76
>PF02362 B3: B3 DNA binding domain; InterPro: IPR003340 Two DNA binding proteins, RAV1 and RAV2 from Arabidopsis thaliana contain two distinct amino acid sequence domains found only in higher plant species Back     alignment and domain information
Probab=99.64  E-value=1.2e-15  Score=134.30  Aligned_cols=99  Identities=23%  Similarity=0.424  Sum_probs=70.3

Q ss_pred             EEEecccccCCCCCcEEeehhhhhhcCCCCCCCCCceEEEEeCCCCeEEEEEEEcCCCCCccccccCchhhhhccCCCCC
Q 002554          359 FEKMLSASDAGRIGRLVLPKKCAEAYFPPISQPEGLPLKVQDSKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQNMQLQAG  438 (908)
Q Consensus       359 F~KvLTaSDVgslGRLVIPKk~AEa~FPpLd~~eG~~L~v~D~~GK~WtFRfsyWpNN~SR~YVLeGWs~FVRsK~LqaG  438 (908)
                      |.|+|+++|+....+|+||++.++.|.  +....++.|.++|..|+.|.+++.++. +..+.++..||..||++++|++|
T Consensus         1 F~K~l~~s~~~~~~~l~iP~~f~~~~~--~~~~~~~~v~l~~~~g~~W~v~~~~~~-~~~~~~l~~GW~~Fv~~n~L~~G   77 (100)
T PF02362_consen    1 FFKVLKPSDVSSSCRLIIPKEFAKKHG--GNKRKSREVTLKDPDGRSWPVKLKYRK-NSGRYYLTGGWKKFVRDNGLKEG   77 (100)
T ss_dssp             EEEE--TTCCCCTT-EEE-HHHHTTTS----SS--CEEEEEETTTEEEEEEEEEEC-CTTEEEEETTHHHHHHHCT--TT
T ss_pred             CEEEEEccCcCCCCEEEeCHHHHHHhC--CCcCCCeEEEEEeCCCCEEEEEEEEEc-cCCeEEECCCHHHHHHHcCCCCC
Confidence            899999999998889999999999882  122357899999999999999999883 33444444699999999999999


Q ss_pred             CEEEEEEec-CCCeEEEEEEeCC
Q 002554          439 DIVTFSRLE-PEGKLVMGFRKAS  460 (908)
Q Consensus       439 DtVVF~R~e-~nGkL~IGVRRa~  460 (908)
                      |.|+|+... ...++.|.+.|++
T Consensus        78 D~~~F~~~~~~~~~~~v~i~~~~  100 (100)
T PF02362_consen   78 DVCVFELIGNSNFTLKVHIFRKS  100 (100)
T ss_dssp             -EEEEEE-SSSCE-EEEEEE---
T ss_pred             CEEEEEEecCCCceEEEEEEECc
Confidence            999999975 3456799998863



The N-terminal regions of RAV1 and RAV2 are homologous to the AP2 DNA-binding domain (see IPR001471 from INTERPRO) present in a family of transcription factors, while the C-terminal region exhibits homology to the highly conserved C-terminal domain, designated B3, of VP1/ABI3 transcription factors []. The AP2 and B3-like domains of RAV1 bind autonomously to the CAACA and CACCTG motifs, respectively, and together achieve a high affinity and specificity of binding. It has been suggested that the AP2 and B3-like domains of RAV1 are connected by a highly flexible structure enabling the two domains to bind to the CAACA and CACCTG motifs in various spacings and orientations [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1WID_A 1YEL_A.

>PF07496 zf-CW: CW-type Zinc Finger; InterPro: IPR011124 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>PF09217 EcoRII-N: Restriction endonuclease EcoRII, N-terminal; InterPro: IPR023372 There are four classes of restriction endonucleases: types I, II,III and IV Back     alignment and domain information
>PF03754 DUF313: Domain of unknown function (DUF313) ; InterPro: IPR005508 This is a family of proteins from Arabidopsis thaliana (Mouse-ear cress) with uncharacterised function Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query908
1wid_A130 Solution Structure Of The B3 Dna-Binding Domain Of 7e-14
2l7p_A100 Ashh2 A Cw Domain Length = 100 1e-04
>pdb|1WID|A Chain A, Solution Structure Of The B3 Dna-Binding Domain Of Rav1 Length = 130 Back     alignment and structure

Iteration: 1

Score = 76.3 bits (186), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 48/123 (39%), Positives = 75/123 (60%), Gaps = 10/123 (8%) Query: 358 LFEKMLSASDAGRIGRLVLPKKCAEAYFP-PISQ--PEGLPLKVQDSKGKEWIFQFRFWP 414 LFEK ++ SD G++ RLV+PK AE +FP P S +G+ L +D GK W F++ +W Sbjct: 13 LFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYW- 71 Query: 415 NNNSRMYVL-EGVTPCIQNMQLQAGDIVTFSRLEPEG-KLVMGFRKASSASASDQDNEAN 472 N+S+ YVL +G + ++ L+AGD+V+FSR + +L +G++ S S SD D Sbjct: 72 -NSSQSYVLTKGWSRFVKEKNLRAGDVVSFSRSNGQDQQLYIGWK---SRSGSDLDASGP 127 Query: 473 KAG 475 +G Sbjct: 128 SSG 130
>pdb|2L7P|A Chain A, Ashh2 A Cw Domain Length = 100 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query908
1wid_A130 DNA-binding protein RAV1; DNA-binding domain, stru 2e-27
2l7p_A100 Histone-lysine N-methyltransferase ASHH2; CW-domai 2e-15
2e61_A69 Zinc finger CW-type PWWP domain protein 1; ZF-CW d 1e-13
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-12
>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2 Length = 130 Back     alignment and structure
 Score =  107 bits (267), Expect = 2e-27
 Identities = 45/123 (36%), Positives = 72/123 (58%), Gaps = 7/123 (5%)

Query: 348 SGDSNSVITPLFEKMLSASDAGRIGRLVLPKKCAEAYFPPIS---QPEGLPLKVQDSKGK 404
           SG S      LFEK ++ SD G++ RLV+PK  AE +FP  S     +G+ L  +D  GK
Sbjct: 3   SGSSGRSAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGK 62

Query: 405 EWIFQFRFWPNNNSRMYVL-EGVTPCIQNMQLQAGDIVTFSRLE-PEGKLVMGFRKASSA 462
            W F++ +W  N+S+ YVL +G +  ++   L+AGD+V+FSR    + +L +G++  S +
Sbjct: 63  VWRFRYSYW--NSSQSYVLTKGWSRFVKEKNLRAGDVVSFSRSNGQDQQLYIGWKSRSGS 120

Query: 463 SAS 465
              
Sbjct: 121 DLD 123


>2l7p_A Histone-lysine N-methyltransferase ASHH2; CW-domain; NMR {Arabidopsis thaliana} Length = 100 Back     alignment and structure
>2e61_A Zinc finger CW-type PWWP domain protein 1; ZF-CW domain, structural genomics, NPPSFA, national project protein structural and functional analyses; NMR {Homo sapiens} PDB: 2rr4_A* Length = 69 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 908
d1wida_117 b.142.1.2 (A:) DNA-binding protein RAV1 {Thale cre 1e-29
d1na6a1175 b.142.1.1 (A:4-178) Restriction endonuclease EcoRI 1e-22
d1yela1102 b.142.1.2 (A:1-102) At1g16640 {Thale cress (Arabid 3e-12
>d1wida_ b.142.1.2 (A:) DNA-binding protein RAV1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 117 Back     information, alignment and structure

class: All beta proteins
fold: DNA-binding pseudobarrel domain
superfamily: DNA-binding pseudobarrel domain
family: B3 DNA binding domain
domain: DNA-binding protein RAV1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
 Score =  111 bits (279), Expect = 1e-29
 Identities = 38/112 (33%), Positives = 66/112 (58%), Gaps = 5/112 (4%)

Query: 356 TPLFEKMLSASDAGRIGRLVLPKKCAEAYFPPISQ---PEGLPLKVQDSKGKEWIFQFRF 412
             LFEK ++ SD G++ RLV+PK  AE +FP  S     +G+ L  +D  GK W F++ +
Sbjct: 4   EALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSY 63

Query: 413 WPNNNSRMYVLEGVTPCIQNMQLQAGDIVTFSRLEPE-GKLVMGFRKASSAS 463
           W ++ S +   +G +  ++   L+AGD+V+FSR   +  +L +G++  S + 
Sbjct: 64  WNSSQSYVL-TKGWSRFVKEKNLRAGDVVSFSRSNGQDQQLYIGWKSRSGSD 114


>d1na6a1 b.142.1.1 (A:4-178) Restriction endonuclease EcoRII, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 175 Back     information, alignment and structure
>d1yela1 b.142.1.2 (A:1-102) At1g16640 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 102 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query908
d1wida_117 DNA-binding protein RAV1 {Thale cress (Arabidopsis 99.88
d1na6a1175 Restriction endonuclease EcoRII, N-terminal domain 99.6
d1yela1102 At1g16640 {Thale cress (Arabidopsis thaliana) [Tax 99.21
>d1wida_ b.142.1.2 (A:) DNA-binding protein RAV1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: All beta proteins
fold: DNA-binding pseudobarrel domain
superfamily: DNA-binding pseudobarrel domain
family: B3 DNA binding domain
domain: DNA-binding protein RAV1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.88  E-value=1.6e-22  Score=172.00  Aligned_cols=107  Identities=38%  Similarity=0.752  Sum_probs=93.9

Q ss_pred             CCCEEEEECCCCCCCCCCCEEEEHHHHHHCCCCCCC---CCCCEEEEEECCCCEEEEEEEECCCCCCCCCCC-CCCHHHH
Q ss_conf             011099855504479999698402325200999999---998339999699993999999929999855012-3822364
Q 002554          355 ITPLFEKMLSASDAGRIGRLVLPKKCAEAYFPPISQ---PEGLPLKVQDSKGKEWIFQFRFWPNNNSRMYVL-EGVTPCI  430 (908)
Q Consensus       355 ~~~LFeKvLT~SDVgslgRLVIPKk~AEs~FPpLd~---~~Gv~L~VkD~~GK~WtFRfsfw~NN~SR~YVL-tGWs~FV  430 (908)
                      ..++|+|+||+|||++.+||+||+.+|++|||+++.   .+++.|.+.|..|++|.|+|++|.  +.+.|++ .||..||
T Consensus         3 ~~~iF~K~Lt~sDv~~~~rL~iP~~~~~~~lp~~~~~~~~~~~~~~~~d~~g~~W~~~~~~~~--~~~~~~l~~GW~~Fv   80 (117)
T d1wida_           3 AEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYWN--SSQSYVLTKGWSRFV   80 (117)
T ss_dssp             CEEEEEEECCTTTTSSSCCEEECHHHHTTTSCCCSSCCSSCCEEEEEEETTTEEEEEEEEEET--TTTEEEEESSHHHHH
T ss_pred             CCEEEEEEECCHHCCCCCEEEECHHHHHHHCCCCCCCCCCCCEEEEEEECCCCEEEEEEEEEC--CCCCEEEECCHHHHH
T ss_conf             764799991112008988899778999973895434567770799999599999999999988--998347745779988


Q ss_pred             HCCCCCCCCEEEEEEEC-CCCEEEEEEEECCCCC
Q ss_conf             20588789889999745-9982999999479987
Q 002554          431 QNMQLQAGDIVTFSRLE-PEGKLVMGFRKASSAS  463 (908)
Q Consensus       431 RsKkLkaGDtVVF~R~e-~nGkL~IGVRRas~~~  463 (908)
                      ++++|++||+|+|++.+ .+++|+|++||+....
T Consensus        81 ~~~~Lk~GD~~~F~~~~~~~~~~~i~~r~~~~~~  114 (117)
T d1wida_          81 KEKNLRAGDVVSFSRSNGQDQQLYIGWKSRSGSD  114 (117)
T ss_dssp             HHTTCCTTCEEEEEECCSSSCCEEEEEECCCSCS
T ss_pred             HHCCCCCCCEEEEEEEECCCCEEEEEEEECCCCC
T ss_conf             8749997999999998189988999999999999



>d1na6a1 b.142.1.1 (A:4-178) Restriction endonuclease EcoRII, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1yela1 b.142.1.2 (A:1-102) At1g16640 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure