BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002556
(908 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 209 bits (532), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 216/700 (30%), Positives = 319/700 (45%), Gaps = 102/700 (14%)
Query: 183 IWHFNLSTSIETLDLFDNNLPSSSVYPWFLNLSRNILHLNLASNSLQ--GPIPEAFQHMV 240
+ F S S+ +LDL N+L L + LN++SN+L G + + +
Sbjct: 90 VSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLK-LN 148
Query: 241 SLRFLALSSNELEGG--IPKFFGNMC-SLNELYLLNNKLSGQLSEFIQNLSSGCTVNSLE 297
SL L LS+N + G + + C L L + NK+SG + S C +LE
Sbjct: 149 SLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD------VSRCV--NLE 200
Query: 298 GLCLYDNDITGPIPDLGGFSSLKELYLGENSLNGTINKSLNHLFKLETLSLDGNSFTGVI 357
L + N+ + IP LG S+L+ L + N L+G +++++ +L+ L++ N F G I
Sbjct: 201 FLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPI 260
Query: 358 SETFFSNMSNLQMLYLANNPLTMKLSHDWVPPFQLKWLSLASCKMGPNFPKWLRTQ-SQL 416
PL +K L++LSLA K P +L L
Sbjct: 261 P------------------PLPLK---------SLQYLSLAENKFTGEIPDFLSGACDTL 293
Query: 417 ILLDISNTGISGTVPDWFWDLSVELFFLNLSNNHIKGKLPDLSFLRSDDI-VVDISSNHF 475
LD+S G VP +F S+ SNN G+LP + L+ + V+D+S N F
Sbjct: 294 TGLDLSGNHFYGAVPPFFGSCSLLESLALSSNN-FSGELPMDTLLKMRGLKVLDLSFNEF 352
Query: 476 TGQIPP----LPSNSTFLNLSKNKFSGSI-TFLCSIIENTWNIFDLSSNLLSGELPDCWL 530
+G++P L ++ L+LS N FSG I LC +NT L +N +G++P
Sbjct: 353 SGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLS 412
Query: 531 NFNSLFILNLANNSFSGKIPDSMGFLHNIR------------------------TLSLNN 566
N + L L+L+ N SG IP S+G L +R TL L+
Sbjct: 413 NCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDF 472
Query: 567 NRLTRELPSSLKNCSQLRVLDLRNNALFGEIPIWIGGNLQNLIVLSLKSNNFHGNIPFQL 626
N LT E+PS L NC+ L + L NN L GEIP WI G L+NL +L L +N+F GNIP +L
Sbjct: 473 NDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWI-GRLENLAILKLSNNSFSGNIPAEL 531
Query: 627 CYLAFIQVLDLSLNNISGKIPKCFSNFSTMIQERSSDPIIGMANRIWVLPGYVYQYRYLD 686
+ LDL+ N +G IP S I I +++ + + +
Sbjct: 532 GDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAAN----FIAGKRYVYIKNDGMKKECHGA 587
Query: 687 NILLTWKGSEHEYKSTL------------------------GFVKCLDLSSNKLCGPILE 722
LL ++G E + L G + LD+S N L G I +
Sbjct: 588 GNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPK 647
Query: 723 EIMDLDGLIALNLSRNNLTGPISPKIGQLKSLDFLDLSRNHFSGSIPSSLVKLCGLGVLD 782
EI + L LNL N+++G I ++G L+ L+ LDLS N G IP ++ L L +D
Sbjct: 648 EIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEID 707
Query: 783 LSYNNLSGKIPLGTQLQSFNASVYAGNLELCGPPLPNQCP 822
LS NNLSG IP Q ++F + + N LCG PLP P
Sbjct: 708 LSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDP 747
Score = 85.9 bits (211), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 111/369 (30%), Positives = 171/369 (46%), Gaps = 68/369 (18%)
Query: 470 ISSNHFTGQIPPLPSNS--TFLNLSKNKFSGSITFLCSIIE-NTWNIFDLSSNLLS--GE 524
+S++H G + ++ T L+LS+N SG +T L S+ + ++SSN L G+
Sbjct: 81 LSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGK 140
Query: 525 LPDCWLNFNSLFILNLANNSFSGKIPDSMGFLHNIRTLSLNNNRLTRELPSSLKNCSQLR 584
+ L NSL +L+L+ NS SG N+ L++ C +L+
Sbjct: 141 V-SGGLKLNSLEVLDLSANSISGA---------NVVGWVLSDG------------CGELK 178
Query: 585 VLDLRNNALFGEIPIWIGGNLQNLIVLSLKSNNFHGNIPFQLCYLAFIQVLDLSLNNISG 644
L + N + G++ + NL L + SNNF IPF L + +Q LD+S N +SG
Sbjct: 179 HLAISGNKISGDVDV---SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSG 234
Query: 645 KIPKCFSNFSTM-IQERSSDPIIGMANRIWVLPGYVYQYRYLDNILLTWKGSEHEYKSTL 703
+ S + + + SS+ +G I LP QY
Sbjct: 235 DFSRAISTCTELKLLNISSNQFVG---PIPPLPLKSLQY--------------------- 270
Query: 704 GFVKCLDLSSNKLCGPILEEIMDL-DGLIALNLSRNNLTGPISPKIGQLKSLDFLDLSRN 762
L L+ NK G I + + D L L+LS N+ G + P G L+ L LS N
Sbjct: 271 -----LSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSN 325
Query: 763 HFSGSIP-SSLVKLCGLGVLDLSYNNLSGKIPLGTQLQSFNASVYAGNLE---LCGPPLP 818
+FSG +P +L+K+ GL VLDLS+N SG++P L + +AS+ +L GP LP
Sbjct: 326 NFSGELPMDTLLKMRGLKVLDLSFNEFSGELP--ESLTNLSASLLTLDLSSNNFSGPILP 383
Query: 819 NQCPNEEST 827
N C N ++T
Sbjct: 384 NLCQNPKNT 392
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 208 bits (530), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 216/699 (30%), Positives = 317/699 (45%), Gaps = 100/699 (14%)
Query: 183 IWHFNLSTSIETLDLFDNNLPSSSVYPWFLNLSRNILHLNLASNSLQGPIP-EAFQHMVS 241
+ F S S+ +LDL N+L L + LN++SN+L P + S
Sbjct: 93 VSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNS 152
Query: 242 LRFLALSSNELEGG--IPKFFGNMC-SLNELYLLNNKLSGQLSEFIQNLSSGCTVNSLEG 298
L L LS+N + G + + C L L + NK+SG + S C +LE
Sbjct: 153 LEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD------VSRCV--NLEF 204
Query: 299 LCLYDNDITGPIPDLGGFSSLKELYLGENSLNGTINKSLNHLFKLETLSLDGNSFTGVIS 358
L + N+ + IP LG S+L+ L + N L+G +++++ +L+ L++ N F G I
Sbjct: 205 LDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIP 264
Query: 359 ETFFSNMSNLQMLYLANNPLTMKLSHDWVPPFQLKWLSLASCKMGPNFPKWLRTQ-SQLI 417
PL +K L++LSLA K P +L L
Sbjct: 265 ------------------PLPLK---------SLQYLSLAENKFTGEIPDFLSGACDTLT 297
Query: 418 LLDISNTGISGTVPDWFWDLSVELFFLNLSNNHIKGKLPDLSFLRSDDI-VVDISSNHFT 476
LD+S G VP +F S+ SNN G+LP + L+ + V+D+S N F+
Sbjct: 298 GLDLSGNHFYGAVPPFFGSCSLLESLALSSNN-FSGELPMDTLLKMRGLKVLDLSFNEFS 356
Query: 477 GQIPP----LPSNSTFLNLSKNKFSGSI-TFLCSIIENTWNIFDLSSNLLSGELPDCWLN 531
G++P L ++ L+LS N FSG I LC +NT L +N +G++P N
Sbjct: 357 GELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSN 416
Query: 532 FNSLFILNLANNSFSGKIPDSMGFLHNIR------------------------TLSLNNN 567
+ L L+L+ N SG IP S+G L +R TL L+ N
Sbjct: 417 CSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFN 476
Query: 568 RLTRELPSSLKNCSQLRVLDLRNNALFGEIPIWIGGNLQNLIVLSLKSNNFHGNIPFQLC 627
LT E+PS L NC+ L + L NN L GEIP WI G L+NL +L L +N+F GNIP +L
Sbjct: 477 DLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWI-GRLENLAILKLSNNSFSGNIPAELG 535
Query: 628 YLAFIQVLDLSLNNISGKIPKCFSNFSTMIQERSSDPIIGMANRIWVLPGYVYQYRYLDN 687
+ LDL+ N +G IP S I I +++ + + +
Sbjct: 536 DCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAAN----FIAGKRYVYIKNDGMKKECHGAG 591
Query: 688 ILLTWKGSEHEYKSTL------------------------GFVKCLDLSSNKLCGPILEE 723
LL ++G E + L G + LD+S N L G I +E
Sbjct: 592 NLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKE 651
Query: 724 IMDLDGLIALNLSRNNLTGPISPKIGQLKSLDFLDLSRNHFSGSIPSSLVKLCGLGVLDL 783
I + L LNL N+++G I ++G L+ L+ LDLS N G IP ++ L L +DL
Sbjct: 652 IGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDL 711
Query: 784 SYNNLSGKIPLGTQLQSFNASVYAGNLELCGPPLPNQCP 822
S NNLSG IP Q ++F + + N LCG PLP P
Sbjct: 712 SNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDP 750
Score = 85.5 bits (210), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 111/369 (30%), Positives = 171/369 (46%), Gaps = 68/369 (18%)
Query: 470 ISSNHFTGQIPPLPSNS--TFLNLSKNKFSGSITFLCSIIE-NTWNIFDLSSNLLS--GE 524
+S++H G + ++ T L+LS+N SG +T L S+ + ++SSN L G+
Sbjct: 84 LSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGK 143
Query: 525 LPDCWLNFNSLFILNLANNSFSGKIPDSMGFLHNIRTLSLNNNRLTRELPSSLKNCSQLR 584
+ L NSL +L+L+ NS SG N+ L++ C +L+
Sbjct: 144 V-SGGLKLNSLEVLDLSANSISGA---------NVVGWVLSDG------------CGELK 181
Query: 585 VLDLRNNALFGEIPIWIGGNLQNLIVLSLKSNNFHGNIPFQLCYLAFIQVLDLSLNNISG 644
L + N + G++ + NL L + SNNF IPF L + +Q LD+S N +SG
Sbjct: 182 HLAISGNKISGDVDV---SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSG 237
Query: 645 KIPKCFSNFSTM-IQERSSDPIIGMANRIWVLPGYVYQYRYLDNILLTWKGSEHEYKSTL 703
+ S + + + SS+ +G I LP QY
Sbjct: 238 DFSRAISTCTELKLLNISSNQFVG---PIPPLPLKSLQY--------------------- 273
Query: 704 GFVKCLDLSSNKLCGPILEEIMDL-DGLIALNLSRNNLTGPISPKIGQLKSLDFLDLSRN 762
L L+ NK G I + + D L L+LS N+ G + P G L+ L LS N
Sbjct: 274 -----LSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSN 328
Query: 763 HFSGSIP-SSLVKLCGLGVLDLSYNNLSGKIPLGTQLQSFNASVYAGNLE---LCGPPLP 818
+FSG +P +L+K+ GL VLDLS+N SG++P L + +AS+ +L GP LP
Sbjct: 329 NFSGELPMDTLLKMRGLKVLDLSFNEFSGELP--ESLTNLSASLLTLDLSSNNFSGPILP 386
Query: 819 NQCPNEEST 827
N C N ++T
Sbjct: 387 NLCQNPKNT 395
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 87.4 bits (215), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 82/293 (27%), Positives = 133/293 (45%), Gaps = 62/293 (21%)
Query: 529 WLNFNSLFILNLANNSFSGKIPDSMGFLHNIRTLSLNNNRLTRELPSSLKNCSQLRVLDL 588
+LNF L+I + N+ G IP ++ L + L + + ++ +P L L LD
Sbjct: 77 YLNF--LYIGGI--NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDF 132
Query: 589 RNNALFGEIPIWIGGNLQNLIVLSLKSNNFHGNIPFQLCYLAFIQV---LDLSLNNISGK 645
NAL G +P I +L NL+ ++ N G IP Y +F ++ + +S N ++GK
Sbjct: 133 SYNALSGTLPPSIS-SLPNLVGITFDGNRISGAIPDS--YGSFSKLFTSMTISRNRLTGK 189
Query: 646 IPKCFSNFSTMIQERSSDPIIGMANRIWVLPGYVYQYRYLDNILLTWKGSEHEYKSTLGF 705
IP F+N + + S + + G A+ ++ GS+ +
Sbjct: 190 IPPTFANLNLAFVDLSRNMLEGDASVLF--------------------GSDKNTQK---- 225
Query: 706 VKCLDLSSNKLCGPILEEIMDLDGLIALNLSRNNLTGPISPKIGQLKSLDFLDLSRNHFS 765
++L++N+L + K+G K+L+ LDL N
Sbjct: 226 ---------------------------IHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIY 257
Query: 766 GSIPSSLVKLCGLGVLDLSYNNLSGKIPLGTQLQSFNASVYAGNLELCGPPLP 818
G++P L +L L L++S+NNL G+IP G LQ F+ S YA N LCG PLP
Sbjct: 258 GTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP 310
Score = 73.9 bits (180), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 68/222 (30%), Positives = 102/222 (45%), Gaps = 34/222 (15%)
Query: 453 GKLPDLSFLRSDDIVVDISSNHFTGQIPPLPSNST---FLNLSKNKFSGSITFLCSIIEN 509
LP L+FL I N+ G IPP + T +L ++ SG+I S I+
Sbjct: 73 ANLPYLNFLYIGGI------NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIK- 125
Query: 510 TWNIFDLSSNLLSGELPDCWLNFNSLFILNLANNSFSGKIPDSMGFLHNIRT-LSLNNNR 568
T D S N LSG LP + +L + N SG IPDS G + T ++++ NR
Sbjct: 126 TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR 185
Query: 569 LTRELPSSLKNCSQLRVLDLRNNALFGEIPIWIG----------------------GNLQ 606
LT ++P + N + L +DL N L G+ + G G +
Sbjct: 186 LTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSK 244
Query: 607 NLIVLSLKSNNFHGNIPFQLCYLAFIQVLDLSLNNISGKIPK 648
NL L L++N +G +P L L F+ L++S NN+ G+IP+
Sbjct: 245 NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286
Score = 70.1 bits (170), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 88/299 (29%), Positives = 125/299 (41%), Gaps = 45/299 (15%)
Query: 192 IETLDLFDNNLPSSSVYPWFLNLSRNILHLNL----ASNSLQGPIPEAFQHMVSLRFLAL 247
+ LDL NLP P L N+ +LN N+L GPIP A + L +L +
Sbjct: 52 VNNLDLSGLNLPKPYPIPSSL---ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYI 108
Query: 248 SSNELEGGIPKFFGNMCSLNELYLLNNKLSGQLSEFIQNLSSGCTVNSLEGLCLYDNDIT 307
+ + G IP F + +L L N LSG L I +L +L G+ N I+
Sbjct: 109 THTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLP------NLVGITFDGNRIS 162
Query: 308 GPIPD-LGGFSSL-KELYLGENSLNGTINKSLNHLFKLETLSLDGNSFTGVISETFFSNM 365
G IPD G FS L + + N L G I + +L L + L N G S F S+
Sbjct: 163 GAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSD- 220
Query: 366 SNLQMLYLANNPLTMKLSHDWVPPFQLKWLSLASCKMGPNFPKWLRTQSQLILLDISNTG 425
N Q ++LA N L F L + L+ G LD+ N
Sbjct: 221 KNTQKIHLAKNSLA----------FDLGKVGLSKNLNG---------------LDLRNNR 255
Query: 426 ISGTVPDWFWDLSVELFFLNLSNNHIKGKLPDLSFLRSDDIVVDISSNHFTGQIPPLPS 484
I GT+P L L LN+S N++ G++P L+ D+ ++ G PLP+
Sbjct: 256 IYGTLPQGLTQLKF-LHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGS--PLPA 311
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 106/395 (26%), Positives = 169/395 (42%), Gaps = 37/395 (9%)
Query: 241 SLRFLALSSNELEGGIPKFFGNMCSLNELYLLNNKLSGQLSEFIQNLSSGCTVNSLEGLC 300
SLR L LSSN L+ P F + L L L N +L+ L+E L + S++ L
Sbjct: 172 SLRKLDLSSNPLKEFSPGCFQTIGKLFALLLNNAQLNPHLTE---KLCWELSNTSIQNLS 228
Query: 301 LYDNDITGPIPDLGGFSSLK-----ELYLGENSLNGTINKSLNHLFKLETLSLDGNSFTG 355
L +N + FS LK +L L N+L+ N S ++L L LSL+ N+
Sbjct: 229 LANNQLLATSE--STFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQR 286
Query: 356 VISETFFSNMSNLQMLYLANNPLTMKLS---HDWVPPFQLKWLS-LASCKMGPNFPKWLR 411
+ +F+ +SNL+ L L +S H + F +WL L M N +
Sbjct: 287 LSPRSFYG-LSNLRYLSLKRAFTKQSVSLASHPNIDDFSFQWLKYLEYLNMDDNNIPSTK 345
Query: 412 TQSQLILLDISNTGISGTVP-------DWFWDLSVE-LFFLNLSNNHIK----GKLPDLS 459
+ + L+ + +S T + F L+ L LNL+ NHI G L
Sbjct: 346 SNTFTGLVSLKYLSLSKTFTSLQTLTNETFVSLAHSPLLTLNLTKNHISKIANGTFSWLG 405
Query: 460 FLRSDDIVVDISSNHFTGQIPPLPSNSTFLNLSKNKFSGSITFLCSIIENTWNIFDLSSN 519
LR D+ ++ +GQ N + LS NK+ T +++ + +
Sbjct: 406 QLRILDLGLNEIEQKLSGQEWRGLRNIFEIYLSYNKYLQLSTSSFALVPSLQRLMLRRVA 465
Query: 520 LLSGEL-PDCWLNFNSLFILNLANNSFSGKIPDSMGFLHNIRTLSLNNNRLTRELPSS-- 576
L + ++ P + +L IL+L+NN+ + D + L N+ L +N L R +
Sbjct: 466 LKNVDISPSPFRPLRNLTILDLSNNNIANINEDLLEGLENLEILDFQHNNLARLWKRANP 525
Query: 577 ------LKNCSQLRVLDLRNNALFGEIPIWIGGNL 605
LK S L +L+L +N L EIP+ + NL
Sbjct: 526 GGPVNFLKGLSHLHILNLESNGL-DEIPVGVFKNL 559
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 89/362 (24%), Positives = 145/362 (40%), Gaps = 60/362 (16%)
Query: 112 KVLNLRTSDYEFARRKFLKEWXXXXXXXXXXXXXCVNLTKSSDWFQVVANLHYLKSLVLR 171
K+L LR+ + EF L++ C FQ + L +L+L
Sbjct: 156 KILALRSEELEFLGNSSLRKLDLSSNPLKEFSPGC---------FQTIGKLF---ALLLN 203
Query: 172 SCAL-PPINPSFIWHFNLSTSIETLDLFDNNLPSSSVYPWFLNLSRNILHLNLASNSLQG 230
+ L P + W + +TSI+ L L +N L ++S + N+ L+L+ N+L
Sbjct: 204 NAQLNPHLTEKLCWELS-NTSIQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHD 262
Query: 231 PIPEAFQHMVSLRFLALSSNELEGGIPKFFGNMCSLNELYLLNNKLSGQLSEFIQNLSSG 290
+F ++ SLR+L+L N ++ P+ F + +L L L ++ +L+S
Sbjct: 263 VGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYL-----SLKRAFTKQSVSLASH 317
Query: 291 CTVNS--------LEGLCLYDNDITGPIPD-LGGFSSLKELYLGE--NSLNGTINKSLNH 339
++ LE L + DN+I + G SLK L L + SL N++
Sbjct: 318 PNIDDFSFQWLKYLEYLNMDDNNIPSTKSNTFTGLVSLKYLSLSKTFTSLQTLTNETFVS 377
Query: 340 LFK--LETLSLDGNSFTGVISETFFSNMSNLQMLYLANNPLTMKLS-HDW---------- 386
L L TL+L N + + + T FS + L++L L N + KLS +W
Sbjct: 378 LAHSPLLTLNLTKNHISKIANGT-FSWLGQLRILDLGLNEIEQKLSGQEWRGLRNIFEIY 436
Query: 387 ----------------VPPFQLKWLSLASCKMGPNFPKWLRTQSQLILLDISNTGISGTV 430
VP Q L + K P R L +LD+SN I+
Sbjct: 437 LSYNKYLQLSTSSFALVPSLQRLMLRRVALKNVDISPSPFRPLRNLTILDLSNNNIANIN 496
Query: 431 PD 432
D
Sbjct: 497 ED 498
Score = 36.2 bits (82), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 71/298 (23%), Positives = 120/298 (40%), Gaps = 63/298 (21%)
Query: 530 LNFNSLFILNLANNSFSGKIPDSMGFLHNIRTLSLNNNRLTRELPSSLKNCSQLRVLDLR 589
L + +L L+L+ N+ S +L ++R LSL N + R P S S LR L L+
Sbjct: 245 LKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSLK 304
Query: 590 NNALFGEIPIWIGGNLQNLIVLSLKSNNFHGNIP-FQLCYLAFIQVLDLSLNNISG---- 644
F + + + H NI F +L +++ L++ NNI
Sbjct: 305 --RAFTKQSVSLAS---------------HPNIDDFSFQWLKYLEYLNMDDNNIPSTKSN 347
Query: 645 -----------KIPKCFSNFSTMIQER----SSDPIIGM---ANRIWVLPGYVY----QY 682
+ K F++ T+ E + P++ + N I + + Q
Sbjct: 348 TFTGLVSLKYLSLSKTFTSLQTLTNETFVSLAHSPLLTLNLTKNHISKIANGTFSWLGQL 407
Query: 683 RYLDNIL---------LTWKGSEHEYKSTLGFVKCLDLSSNKLC-GPILEEIMDLDGLIA 732
R LD L W+G + ++ L + K L LS++ P L+ +M L
Sbjct: 408 RILDLGLNEIEQKLSGQEWRGLRNIFEIYLSYNKYLQLSTSSFALVPSLQRLM----LRR 463
Query: 733 LNLSRNNLT-GPISPKIGQLKSLDFLDLSRNHFSGSIPSSLVKLCGLGVLDLSYNNLS 789
+ L +++ P P L++L LDLS N+ + L L L +LD +NNL+
Sbjct: 464 VALKNVDISPSPFRP----LRNLTILDLSNNNIANINEDLLEGLENLEILDFQHNNLA 517
Score = 33.5 bits (75), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 72/287 (25%), Positives = 100/287 (34%), Gaps = 49/287 (17%)
Query: 514 FDLSSNLLSGELPDCWLNFNSLFILNLANNSFSGKIPDSMGFLHNIRTLSLNNNRLTREL 573
DLSSN L P C+ LF L L N N LT +L
Sbjct: 176 LDLSSNPLKEFSPGCFQTIGKLFALLLNNAQL--------------------NPHLTEKL 215
Query: 574 PSSLKNCSQLRVLDLRNNALFGEIPIWIGG-NLQNLIVLSLKSNNFH--GNIPFQLCYLA 630
L N S ++ L L NN L G NL L L NN H GN F YL
Sbjct: 216 CWELSNTS-IQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSF--SYLP 272
Query: 631 FIQVLDLSLNNISGKIPKCFSNFSTMIQERSSDPIIGMANRIWVLPGYVYQYRYLDNILL 690
++ L L NNI P+ F S + + + P +D+
Sbjct: 273 SLRYLSLEYNNIQRLSPRSFYGLSNLRYLSLKRAFTKQSVSLASHPN-------IDDFSF 325
Query: 691 TWKGSEHEYKSTLGFVKCLDLSSNKLCGPILEEIMDLDGLIALNLSR-----NNLTGPIS 745
W L +++ L++ N + L L L+LS+ LT
Sbjct: 326 QW----------LKYLEYLNMDDNNIPSTKSNTFTGLVSLKYLSLSKTFTSLQTLTNETF 375
Query: 746 PKIGQLKSLDFLDLSRNHFSGSIPSSLVKLCGLGVLDLSYNNLSGKI 792
+ L L+L++NH S + L L +LDL N + K+
Sbjct: 376 VSLAH-SPLLTLNLTKNHISKIANGTFSWLGQLRILDLGLNEIEQKL 421
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 84/325 (25%), Positives = 121/325 (37%), Gaps = 37/325 (11%)
Query: 467 VVDISSNHFTGQIPPLPSNSTFLNLSKNKFS----GSITFLCSIIENTWNIFDLSSNLLS 522
V D S T LPSN T LNL+ N+ + T + I D N +S
Sbjct: 8 VADCSHLKLTHIPDDLPSNITVLNLTHNQLRRLPPTNFTRYSQLA-----ILDAGFNSIS 62
Query: 523 GELPDCWLNFNSLFILNLANNSFSGKIPDSMGFLHNIRTLSLNNNRLTRELPSSLKNCSQ 582
P+ L +LNL +N S + F N+ L L +N + + + KN
Sbjct: 63 KLEPELCQILPLLKVLNLQHNELSQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKN 122
Query: 583 LRVLDLRNNALFGEIPIWIGGNLQNLIVLSLKSNNFHGNIPFQLCYL--AFIQVLDLSLN 640
L LDL +N L + G L+NL L L N +L +L + ++ LDLS N
Sbjct: 123 LIKLDLSHNGL-SSTKLGTGVQLENLQELLLAKNKILALRSEELEFLGNSSLRKLDLSSN 181
Query: 641 NISGKIPKCFSNFSTMIQERSSDPIIGMANRIWVLPGYVYQYRYLDNILLTWKGSEHEYK 700
+ P CF + + N + P + L W+ S
Sbjct: 182 PLKEFSPGCFQTIGKLFA--------LLLNNAQLNPHLTEK--------LCWELSNTS-- 223
Query: 701 STLGFVKCLDLSSNKLCGPILEEIMDLD--GLIALNLSRNNLTGPISPKIGQLKSLDFLD 758
++ L L++N+L L L L+LS NNL + L SL +L
Sbjct: 224 -----IQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLS 278
Query: 759 LSRNHFSGSIPSSLVKLCGLGVLDL 783
L N+ P S L L L L
Sbjct: 279 LEYNNIQRLSPRSFYGLSNLRYLSL 303
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 81/184 (44%), Gaps = 20/184 (10%)
Query: 213 NLSRNILHLNLASNSLQGPIPEAFQHMVSLRFLALSSNELEGGIPKFFGNMCSLNELYLL 272
N+ + L+L SN L +AF + LR L L+ N+L+ F + +L L++
Sbjct: 34 NIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93
Query: 273 NNKLSG----------QLSEF------IQNLSSGC--TVNSLEGLCLYDNDITG-PIPDL 313
+NKL L+E +++L ++ L L L N++ P
Sbjct: 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVF 153
Query: 314 GGFSSLKELYLGENSLNGTINKSLNHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLYL 373
+SLKEL L N L + + L +L+TL LD N V E F ++ L+ML L
Sbjct: 154 DKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRV-PEGAFDSLEKLKMLQL 212
Query: 374 ANNP 377
NP
Sbjct: 213 QENP 216
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 67/154 (43%), Gaps = 17/154 (11%)
Query: 186 FNLSTSIETLDLFDNNLPS--SSVYPWFLNLSRNILHLNLASNSLQGPIPEAFQHMVSLR 243
F ++ETL + DN L + V+ +NL+ L L N L+ P F + L
Sbjct: 81 FKELKNLETLWVTDNKLQALPIGVFDQLVNLA----ELRLDRNQLKSLPPRVFDSLTKLT 136
Query: 244 FLALSSNELEGGIPKFFGNMCSLNELYLLNNKLSGQLSEFIQNLSSGCTVNSLEGLCLYD 303
+L+L NEL+ F + SL EL L NN+L L+ T+ D
Sbjct: 137 YLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLK-------LD 189
Query: 304 NDITGPIPDLGGFSS---LKELYLGENSLNGTIN 334
N+ +P+ G F S LK L L EN + T N
Sbjct: 190 NNQLKRVPE-GAFDSLEKLKMLQLQENPWDCTCN 222
Score = 34.3 bits (77), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 58/221 (26%), Positives = 83/221 (37%), Gaps = 62/221 (28%)
Query: 243 RFLALSSNELEGGIPKFFGNMCSLNELYLLNNKLSGQLSEFIQNLSSGC--TVNSLEGLC 300
+ L L SN+L K F + L LYL +NKL Q L +G + +LE L
Sbjct: 40 KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKL--------QTLPAGIFKELKNLETLW 91
Query: 301 LYDNDITG-PIPDLGGFSSLKELYLGENSLNGTINKSLNHLFKLETLSLDGNSFTGVISE 359
+ DN + PI +L EL L N L + + L KL LSL N + +
Sbjct: 92 VTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQS-LPK 150
Query: 360 TFFSNMSNLQMLYLANNPLTMKLSHDWVPPFQLKWLSLASCKMGPNFPKWLRTQSQLILL 419
F +++L+ L L NN QLK
Sbjct: 151 GVFDKLTSLKELRLYNN--------------QLK-------------------------- 170
Query: 420 DISNTGISGTVPDWFWDLSVELFFLNLSNNHIKGKLPDLSF 460
VP+ +D EL L L NN +K ++P+ +F
Sbjct: 171 ---------RVPEGAFDKLTELKTLKLDNNQLK-RVPEGAF 201
Score = 29.6 bits (65), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 52/127 (40%), Gaps = 9/127 (7%)
Query: 538 LNLANNSFSGKIPDSMGFLHNIRTLSLNNNRLTRELPS----SLKNCSQLRVLDLRNNAL 593
L+L +N S + L +R L LN+N+L + LP+ LKN L V D + AL
Sbjct: 42 LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKL-QTLPAGIFKELKNLETLWVTDNKLQAL 100
Query: 594 FGEIPIWIGGNLQNLIVLSLKSNNFHGNIPFQLCYLAFIQVLDLSLNNISGKIPKCFSNF 653
PI + L NL L L N P L + L L N + F
Sbjct: 101 ----PIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKL 156
Query: 654 STMIQER 660
+++ + R
Sbjct: 157 TSLKELR 163
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 62/225 (27%), Positives = 89/225 (39%), Gaps = 60/225 (26%)
Query: 217 NILHLNLASNSLQGPIPEAFQHMVSLRFLALSSNELEGGIPKFFGNMCSLNELYLLNNKL 276
N +LNL NS+Q + F+H+ L L LS N + F + SLN L L +N+L
Sbjct: 36 NTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRL 95
Query: 277 SGQLSEFIQNLSSGCTVNSLEGLCLYDNDITGPIP-------------DLGGFSSLKELY 323
+ ++ + LS L L L +N I IP DLG L+ Y
Sbjct: 96 TTVPTQAFEYLS------KLRELWLRNNPIES-IPSYAFNRVPSLRRLDLGELKRLE--Y 146
Query: 324 LGENSLNGTIN--------------KSLNHLFKLETLSLDGN--------SFTGV----- 356
+ E + G +N +L L +LE L L GN SF G+
Sbjct: 147 ISEAAFEGLVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRK 206
Query: 357 ----------ISETFFSNMSNLQMLYLANNPLTMKLSHDWVPPFQ 391
I F ++ +L+ L L++N L M L HD P
Sbjct: 207 LWLMHAQVATIERNAFDDLKSLEELNLSHNNL-MSLPHDLFTPLH 250
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 74/188 (39%), Gaps = 4/188 (2%)
Query: 470 ISSNHFTGQIPP-LPSNSTFLNLSKNKFSGSITFLCSIIENTWNIFDLSSNLLSGELPDC 528
I + ++P +P N+ +LNL +N T + + I LS NL+
Sbjct: 20 ICTRRELAEVPASIPVNTRYLNLQENSIQVIRTDTFKHLRHL-EILQLSKNLVRKIEVGA 78
Query: 529 WLNFNSLFILNLANNSFSGKIPDSMGFLHNIRTLSLNNNRLTRELPSSLKNCSQLRVLDL 588
+ SL L L +N + + +L +R L L NN + + LR LDL
Sbjct: 79 FNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDL 138
Query: 589 RNNALFGEIPIWIGGNLQNLIVLSLKSNNFHGNIPFQLCYLAFIQVLDLSLNNISGKIPK 648
I L NL L+L N +IP L L ++ L+LS N + P
Sbjct: 139 GELKRLEYISEAAFEGLVNLRYLNLGMCNL-KDIP-NLTALVRLEELELSGNRLDLIRPG 196
Query: 649 CFSNFSTM 656
F +++
Sbjct: 197 SFQGLTSL 204
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 62/225 (27%), Positives = 89/225 (39%), Gaps = 60/225 (26%)
Query: 217 NILHLNLASNSLQGPIPEAFQHMVSLRFLALSSNELEGGIPKFFGNMCSLNELYLLNNKL 276
N +LNL NS+Q + F+H+ L L LS N + F + SLN L L +N+L
Sbjct: 36 NTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRL 95
Query: 277 SGQLSEFIQNLSSGCTVNSLEGLCLYDNDITGPIP-------------DLGGFSSLKELY 323
+ ++ + LS L L L +N I IP DLG L+ Y
Sbjct: 96 TTVPTQAFEYLS------KLRELWLRNNPIES-IPSYAFNRVPSLRRLDLGELKRLE--Y 146
Query: 324 LGENSLNGTIN--------------KSLNHLFKLETLSLDGN--------SFTGV----- 356
+ E + G +N +L L +LE L L GN SF G+
Sbjct: 147 ISEAAFEGLVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRK 206
Query: 357 ----------ISETFFSNMSNLQMLYLANNPLTMKLSHDWVPPFQ 391
I F ++ +L+ L L++N L M L HD P
Sbjct: 207 LWLMHAQVATIERNAFDDLKSLEELNLSHNNL-MSLPHDLFTPLH 250
Score = 30.0 bits (66), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 77/189 (40%), Gaps = 6/189 (3%)
Query: 470 ISSNHFTGQIPP-LPSNSTFLNLSKNKFSGSITFLCSIIENTWNIFDLSSNLLSGELPDC 528
I + ++P +P N+ +LNL +N T + + I LS NL+
Sbjct: 20 ICTRRELAEVPASIPVNTRYLNLQENSIQVIRTDTFKHLRH-LEILQLSKNLVRKIEVGA 78
Query: 529 WLNFNSLFILNLANNSFSGKIPDSMGFLHNIRTLSLNNNRLTRELPS-SLKNCSQLRVLD 587
+ SL L L +N + + +L +R L L NN + +PS + LR LD
Sbjct: 79 FNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPI-ESIPSYAFNRVPSLRRLD 137
Query: 588 LRNNALFGEIPIWIGGNLQNLIVLSLKSNNFHGNIPFQLCYLAFIQVLDLSLNNISGKIP 647
L I L NL L+L N +IP L L ++ L+LS N + P
Sbjct: 138 LGELKRLEYISEAAFEGLVNLRYLNLGMCNL-KDIP-NLTALVRLEELELSGNRLDLIRP 195
Query: 648 KCFSNFSTM 656
F +++
Sbjct: 196 GSFQGLTSL 204
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 74/164 (45%), Gaps = 14/164 (8%)
Query: 217 NILHLNLASNSLQGPIPEAFQHMVSLRFLALSSNELEGGIPKFFGNMCSLNELYLLNNKL 276
N+ +L L N L A + + +L +L L+ N+L+ F + +L EL L+ N+L
Sbjct: 64 NVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQL 121
Query: 277 SGQLSEFIQNLSSGC--TVNSLEGLCLYDNDITG-PIPDLGGFSSLKELYLGENSLNGTI 333
Q+L G + +L L LY N + P ++L L L N L
Sbjct: 122 --------QSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLP 173
Query: 334 NKSLNHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLYLANNP 377
+ L +L+ LSL+ N V + F +++L ++L NNP
Sbjct: 174 EGVFDKLTQLKQLSLNDNQLKSV-PDGVFDRLTSLTHIWLLNNP 216
Score = 37.0 bits (84), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 60/120 (50%), Gaps = 11/120 (9%)
Query: 158 VVANLHYLKSLVLRSCALPPINPSFIWHFNLSTSIETLDLFDNNLPS--SSVYPWFLNLS 215
V L LK LVL L + P + F+ T++ L L+ N L S V+ NL+
Sbjct: 104 VFDKLTNLKELVLVENQLQSL-PDGV--FDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLT 160
Query: 216 RNILHLNLASNSLQGPIPEA-FQHMVSLRFLALSSNELEGGIPKFFGNMCSLNELYLLNN 274
R L+L +N LQ +PE F + L+ L+L+ N+L+ F + SL ++LLNN
Sbjct: 161 R----LDLDNNQLQS-LPEGVFDKLTQLKQLSLNDNQLKSVPDGVFDRLTSLTHIWLLNN 215
Score = 36.2 bits (82), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 66/149 (44%), Gaps = 16/149 (10%)
Query: 234 EAFQHMVSLRFLALSSNELEGGIPKFFGNMCSLNELYLLNNKLSGQLSEFIQNLSSGC-- 291
+ Q++ ++R+LAL N+L + +L L L N+L Q+L +G
Sbjct: 57 QGIQYLPNVRYLALGGNKLHD--ISALKELTNLTYLILTGNQL--------QSLPNGVFD 106
Query: 292 TVNSLEGLCLYDNDITGPIPD--LGGFSSLKELYLGENSLNGTINKSLNHLFKLETLSLD 349
+ +L+ L L +N + +PD ++L LYL N L + L L L LD
Sbjct: 107 KLTNLKELVLVENQLQS-LPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLD 165
Query: 350 GNSFTGVISETFFSNMSNLQMLYLANNPL 378
N + E F ++ L+ L L +N L
Sbjct: 166 NNQLQS-LPEGVFDKLTQLKQLSLNDNQL 193
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 66/245 (26%), Positives = 111/245 (45%), Gaps = 46/245 (18%)
Query: 551 DSMGFLHNIRTLSLNNNRLTRELPSSLKNCSQLRVLDLRNNALFGEIPIWIGGNLQNLIV 610
D + +L+N+ ++ +NN+LT P LKN ++L + + NN + P+ NL NL
Sbjct: 61 DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPL---ANLTNLTG 115
Query: 611 LSLKSNNFHGNIPFQLCYLAFIQVLDLSLNNISGKIPKCFSNFSTMIQERSSDPIIGMAN 670
L+L +N P + L + L+LS N IS S +++ Q + N
Sbjct: 116 LTLFNNQITDIDPLK--NLTNLNRLELSSNTISDI--SALSGLTSLQQ-------LSFGN 164
Query: 671 RIWVLPGYVYQYRYLDNILLTWKGSEHEYKSTLGFVKCLDLSSNKLCG-PILEEIMDLDG 729
++ ++ + + L ++ LD+SSNK+ +L ++ +L+
Sbjct: 165 QV----------------------TDLKPLANLTTLERLDISSNKVSDISVLAKLTNLES 202
Query: 730 LIALNLSRNNLTGPISPKIGQLKSLDFLDLSRNHFSGSIPSSLVKLCGLGVLDLSYNNLS 789
LIA NN I+P +G L +LD L L+ N +L L L LDL+ N +S
Sbjct: 203 LIA----TNNQISDITP-LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQIS 255
Query: 790 GKIPL 794
PL
Sbjct: 256 NLAPL 260
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 66/245 (26%), Positives = 111/245 (45%), Gaps = 46/245 (18%)
Query: 551 DSMGFLHNIRTLSLNNNRLTRELPSSLKNCSQLRVLDLRNNALFGEIPIWIGGNLQNLIV 610
D + +L+N+ ++ +NN+LT P LKN ++L + + NN + P+ NL NL
Sbjct: 62 DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPL---ANLTNLTG 116
Query: 611 LSLKSNNFHGNIPFQLCYLAFIQVLDLSLNNISGKIPKCFSNFSTMIQERSSDPIIGMAN 670
L+L +N P + L + L+LS N IS S +++ Q + N
Sbjct: 117 LTLFNNQITDIDPLK--NLTNLNRLELSSNTISDI--SALSGLTSLQQ-------LSFGN 165
Query: 671 RIWVLPGYVYQYRYLDNILLTWKGSEHEYKSTLGFVKCLDLSSNKLCG-PILEEIMDLDG 729
++ ++ + + L ++ LD+SSNK+ +L ++ +L+
Sbjct: 166 QV----------------------TDLKPLANLTTLERLDISSNKVSDISVLAKLTNLES 203
Query: 730 LIALNLSRNNLTGPISPKIGQLKSLDFLDLSRNHFSGSIPSSLVKLCGLGVLDLSYNNLS 789
LIA NN I+P +G L +LD L L+ N +L L L LDL+ N +S
Sbjct: 204 LIA----TNNQISDITP-LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQIS 256
Query: 790 GKIPL 794
PL
Sbjct: 257 NLAPL 261
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 66/246 (26%), Positives = 111/246 (45%), Gaps = 46/246 (18%)
Query: 551 DSMGFLHNIRTLSLNNNRLTRELPSSLKNCSQLRVLDLRNNALFGEIPIWIGGNLQNLIV 610
D + +L+N+ ++ +NN+LT P LKN ++L + + NN + P+ NL NL
Sbjct: 57 DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPL---ANLTNLTG 111
Query: 611 LSLKSNNFHGNIPFQLCYLAFIQVLDLSLNNISGKIPKCFSNFSTMIQERSSDPIIGMAN 670
L+L +N P + L + L+LS N IS S +++ Q + N
Sbjct: 112 LTLFNNQITDIDPLK--NLTNLNRLELSSNTISDI--SALSGLTSLQQ-------LNFGN 160
Query: 671 RIWVLPGYVYQYRYLDNILLTWKGSEHEYKSTLGFVKCLDLSSNKLCG-PILEEIMDLDG 729
++ ++ + + L ++ LD+SSNK+ +L ++ +L+
Sbjct: 161 QV----------------------TDLKPLANLTTLERLDISSNKVSDISVLAKLTNLES 198
Query: 730 LIALNLSRNNLTGPISPKIGQLKSLDFLDLSRNHFSGSIPSSLVKLCGLGVLDLSYNNLS 789
LIA NN I+P +G L +LD L L+ N +L L L LDL+ N +S
Sbjct: 199 LIA----TNNQISDITP-LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQIS 251
Query: 790 GKIPLG 795
PL
Sbjct: 252 NLAPLS 257
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 66/245 (26%), Positives = 111/245 (45%), Gaps = 46/245 (18%)
Query: 551 DSMGFLHNIRTLSLNNNRLTRELPSSLKNCSQLRVLDLRNNALFGEIPIWIGGNLQNLIV 610
D + +L+N+ ++ +NN+LT P LKN ++L + + NN + P+ NL NL
Sbjct: 57 DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPL---ANLTNLTG 111
Query: 611 LSLKSNNFHGNIPFQLCYLAFIQVLDLSLNNISGKIPKCFSNFSTMIQERSSDPIIGMAN 670
L+L +N P + L + L+LS N IS S +++ Q + N
Sbjct: 112 LTLFNNQITDIDPLK--NLTNLNRLELSSNTISDI--SALSGLTSLQQ-------LNFGN 160
Query: 671 RIWVLPGYVYQYRYLDNILLTWKGSEHEYKSTLGFVKCLDLSSNKLCG-PILEEIMDLDG 729
++ ++ + + L ++ LD+SSNK+ +L ++ +L+
Sbjct: 161 QV----------------------TDLKPLANLTTLERLDISSNKVSDISVLAKLTNLES 198
Query: 730 LIALNLSRNNLTGPISPKIGQLKSLDFLDLSRNHFSGSIPSSLVKLCGLGVLDLSYNNLS 789
LIA NN I+P +G L +LD L L+ N +L L L LDL+ N +S
Sbjct: 199 LIA----TNNQISDITP-LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQIS 251
Query: 790 GKIPL 794
PL
Sbjct: 252 NLAPL 256
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 69/246 (28%), Positives = 108/246 (43%), Gaps = 45/246 (18%)
Query: 551 DSMGFLHNIRTLSLNNNRLTRELPSSLKNCSQLRVLDLRNNALFGEIPIWIGGNLQNLIV 610
D + +L+N+ ++ +NN+LT P LKN ++L + + NN + P+ NL NL
Sbjct: 57 DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPL---ANLTNLTG 111
Query: 611 LSLKSNNFHGNIPFQLCYLAFIQVLDLSLNNISGKIPKCFSNFSTMIQERSSDPIIGMAN 670
L+L +N P + L + L+LS N IS S +++ Q S
Sbjct: 112 LTLFNNQITDIDPLK--NLTNLNRLELSSNTISDI--SALSGLTSLQQLNFSS------- 160
Query: 671 RIWVLPGYVYQYRYLDNILLTWKGSEHEYKSTLGFVKCLDLSSNKLCG-PILEEIMDLDG 729
V + L N L ++ LD+SSNK+ +L ++ +L+
Sbjct: 161 ------NQVTDLKPLAN---------------LTTLERLDISSNKVSDISVLAKLTNLES 199
Query: 730 LIALNLSRNNLTGPISPKIGQLKSLDFLDLSRNHFSGSIPSSLVKLCGLGVLDLSYNNLS 789
LIA NN I+P +G L +LD L L+ N +L L L LDL+ N +S
Sbjct: 200 LIA----TNNQISDITP-LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQIS 252
Query: 790 GKIPLG 795
PL
Sbjct: 253 NLAPLS 258
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 69/246 (28%), Positives = 108/246 (43%), Gaps = 45/246 (18%)
Query: 551 DSMGFLHNIRTLSLNNNRLTRELPSSLKNCSQLRVLDLRNNALFGEIPIWIGGNLQNLIV 610
D + +L+N+ ++ +NN+LT P LKN ++L + + NN + P+ NL NL
Sbjct: 57 DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPL---ANLTNLTG 111
Query: 611 LSLKSNNFHGNIPFQLCYLAFIQVLDLSLNNISGKIPKCFSNFSTMIQERSSDPIIGMAN 670
L+L +N P + L + L+LS N IS S +++ Q S
Sbjct: 112 LTLFNNQITDIDPLK--NLTNLNRLELSSNTISDI--SALSGLTSLQQLSFSS------- 160
Query: 671 RIWVLPGYVYQYRYLDNILLTWKGSEHEYKSTLGFVKCLDLSSNKLCG-PILEEIMDLDG 729
V + L N L ++ LD+SSNK+ +L ++ +L+
Sbjct: 161 ------NQVTDLKPLAN---------------LTTLERLDISSNKVSDISVLAKLTNLES 199
Query: 730 LIALNLSRNNLTGPISPKIGQLKSLDFLDLSRNHFSGSIPSSLVKLCGLGVLDLSYNNLS 789
LIA NN I+P +G L +LD L L+ N +L L L LDL+ N +S
Sbjct: 200 LIA----TNNQISDITP-LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQIS 252
Query: 790 GKIPLG 795
PL
Sbjct: 253 NLAPLS 258
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 69/246 (28%), Positives = 108/246 (43%), Gaps = 45/246 (18%)
Query: 551 DSMGFLHNIRTLSLNNNRLTRELPSSLKNCSQLRVLDLRNNALFGEIPIWIGGNLQNLIV 610
D + +L+N+ ++ +NN+LT P LKN ++L + + NN + P+ NL NL
Sbjct: 57 DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPL---ANLTNLTG 111
Query: 611 LSLKSNNFHGNIPFQLCYLAFIQVLDLSLNNISGKIPKCFSNFSTMIQERSSDPIIGMAN 670
L+L +N P + L + L+LS N IS S +++ Q S
Sbjct: 112 LTLFNNQITDIDPLK--NLTNLNRLELSSNTISDI--SALSGLTSLQQLSFSS------- 160
Query: 671 RIWVLPGYVYQYRYLDNILLTWKGSEHEYKSTLGFVKCLDLSSNKLCG-PILEEIMDLDG 729
V + L N L ++ LD+SSNK+ +L ++ +L+
Sbjct: 161 ------NQVTDLKPLAN---------------LTTLERLDISSNKVSDISVLAKLTNLES 199
Query: 730 LIALNLSRNNLTGPISPKIGQLKSLDFLDLSRNHFSGSIPSSLVKLCGLGVLDLSYNNLS 789
LIA NN I+P +G L +LD L L+ N +L L L LDL+ N +S
Sbjct: 200 LIA----TNNQISDITP-LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQIS 252
Query: 790 GKIPLG 795
PL
Sbjct: 253 NLAPLS 258
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 75/172 (43%), Gaps = 9/172 (5%)
Query: 192 IETLDLFDNNLPSSSVYPWFLNLSRNILHLNLASNSLQGPIPEAFQHMVSLRFLALSSNE 251
E LDL L + S F L++ + LNL N LQ F + L L L++N+
Sbjct: 37 TEKLDLQSTGLATLS-DATFRGLTK-LTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ 94
Query: 252 LEGGIPKFFGNMCSLNELYLLNNKLSGQLSEFIQNLSSGCTVNSLEGLCLYDNDITG-PI 310
L F ++ L++LYL N+L S L+ L+ L L N + P
Sbjct: 95 LASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLT------KLKELRLNTNQLQSIPA 148
Query: 311 PDLGGFSSLKELYLGENSLNGTINKSLNHLFKLETLSLDGNSFTGVISETFF 362
++L+ L L N L + + + L KL+T++L GN F ET +
Sbjct: 149 GAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCETLY 200
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 120/532 (22%), Positives = 203/532 (38%), Gaps = 109/532 (20%)
Query: 177 PINPSFIWHFNLSTSIETLDLFDNNLPSSSVYPWFLNLSRNILH-----------LNLAS 225
PI SF + L+ + ++ F N L S Y +RN+ H L+L+
Sbjct: 7 PIVGSFHFVCALALIVGSMTPFSNELESMVDYS-----NRNLTHVPKDLPPRTKALSLSQ 61
Query: 226 NSLQGPIPEAFQHMVSLRFLALSSNELEGGIPKFFGNMCSLNELYLLNNKLSGQLSEFIQ 285
NS+ + LR L LS N + F L L + +N+L Q
Sbjct: 62 NSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRL--------Q 113
Query: 286 NLSSGCTVNSLEGLCLY--DNDITGPIPDLGGFSSLKELYLGENSLNGTINKSLNHLFKL 343
N+S C + SL L L D D+ + G + L L L + HL L
Sbjct: 114 NISC-CPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHL-HL 171
Query: 344 ETLSLDGNSFTGVISETFFSNMSNLQMLYLANNPLTMKLSHDWVPPFQLKWLSLASCKMG 403
+ LD S+ ET + N +L+L +P ++ + L L L++ K+
Sbjct: 172 SCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLN 231
Query: 404 -PNFPKWLRTQSQLI----LLDISNTGISGTVPDWFWDLSVELF---------FLNLSNN 449
N + + S+L LL+++ I T W SV+LF +LN+ N
Sbjct: 232 DENCQRLMTFLSELTRGPTLLNVTLQHIETT-----WKCSVKLFQFFWPRPVEYLNIYNL 286
Query: 450 HIKGKLPDLSFLRSDDIVVDISSNHFTGQI------------------------------ 479
I ++ F S+ + + H Q+
Sbjct: 287 TITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHM 346
Query: 480 --PPLPSNSTFLNLSKNKFSGSITFLCSI-------------IENTWNIFDLSSNLLSGE 524
PP PS+ TFLN ++N F+ S+ CS ++N + + ++ N+ S E
Sbjct: 347 VCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLE 406
Query: 525 LPDCWLN-------------FNSLFILNLANNSFSGKIPDSMGFLHNIRTLSLNNNRLTR 571
D LN S+ +LNL++N +G + + ++ L L+NNR+
Sbjct: 407 TLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM- 463
Query: 572 ELPSSLKNCSQLRVLDLRNNALFGEIPIWIGGNLQNLIVLSLKSNNFHGNIP 623
+P + + L+ L++ +N L +P + L +L + L N + P
Sbjct: 464 SIPKDVTHLQALQELNVASNQL-KSVPDGVFDRLTSLQYIWLHDNPWDCTCP 514
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 66/140 (47%), Gaps = 23/140 (16%)
Query: 156 FQVVANLHYLKSLVLRSCALPPINPSFIWHFNLSTSIETLDLFDNNLPSSSVYPWFLNLS 215
FQ + L L++L+L+ L + N+S S+ETLD+ N+L +S Y +
Sbjct: 370 FQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMS-SLETLDVSLNSL-NSHAYDRTCAWA 427
Query: 216 RNILHLNLASNSLQGP---------------------IPEAFQHMVSLRFLALSSNELEG 254
+IL LNL+SN L G IP+ H+ +L+ L ++SN+L+
Sbjct: 428 ESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKS 487
Query: 255 GIPKFFGNMCSLNELYLLNN 274
F + SL ++L +N
Sbjct: 488 VPDGVFDRLTSLQYIWLHDN 507
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 65/164 (39%), Gaps = 35/164 (21%)
Query: 214 LSRNILHLNLASNSLQGPIPEAFQHMVSLRFLALSSNELEGGIPKFFGNMCSLNELYLLN 273
+S N LNL N +Q +F+H+ L L LS N + F + +LN L L +
Sbjct: 62 ISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121
Query: 274 NKLSGQLSEFIQNLSSGCTVNSLEGLCLYDNDITGPIPDLGGF---SSLKELYLGENSLN 330
N+L+ IP+ G F S LKEL+L N +
Sbjct: 122 NRLTT-------------------------------IPN-GAFVYLSKLKELWLRNNPIE 149
Query: 331 GTINKSLNHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLYLA 374
+ + N + L L L ISE F +SNL+ L LA
Sbjct: 150 SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLA 193
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 67/261 (25%), Positives = 115/261 (44%), Gaps = 32/261 (12%)
Query: 310 IPDLGGFSSLKELYLGENSLNGTINKSLNHLFKLETLSLDGNSFTGVISETFFSNMSNLQ 369
+PD G ++ + L L EN + S HL LE L L N I F+ ++NL
Sbjct: 58 VPD-GISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLN 115
Query: 370 MLYLANNPLTMKLSHDWVPPFQLK--WLSLASCKMGPNFPKWLRTQSQLILLDISNTGIS 427
L L +N LT + +V +LK WL + P++ + R S L LD+
Sbjct: 116 TLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSY-AFNRIPS-LRRLDLGELKRL 173
Query: 428 GTVPDWFWDLSVELFFLNLSNNHIKGKLPDLS-FLRSDDIVVDISSNHFTGQIPPLPSNS 486
+ + ++ L +LNL+ +++ ++P+L+ ++ D++ D+S NH + P
Sbjct: 174 SYISEGAFEGLSNLRYLNLAMCNLR-EIPNLTPLIKLDEL--DLSGNHLSAIRP-----G 225
Query: 487 TFLNLSKNKFSGSITFLCSIIENTWNIFDLSSNLLSGELPDCWLNFNSLFILNLANNSFS 546
+F L + I +IE N FD N SL +NLA+N+ +
Sbjct: 226 SFQGLMHLQKLWMIQSQIQVIER--NAFD---------------NLQSLVEINLAHNNLT 268
Query: 547 GKIPDSMGFLHNIRTLSLNNN 567
D LH++ + L++N
Sbjct: 269 LLPHDLFTPLHHLERIHLHHN 289
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 67/248 (27%), Positives = 100/248 (40%), Gaps = 40/248 (16%)
Query: 147 VNLTKSSDWFQVVANLHYLKSLVLRSCALPPINPSFIWHFNLSTSIETLDLFDNNLPSSS 206
+NL ++ V + +L+ L + + I I FN ++ TL+LFDN L +
Sbjct: 69 LNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTT-- 126
Query: 207 VYPWFLNLSRNILHLNLASNSLQGPIPE-AFQHMVSLRFLALSSNELEGGIPKF-FGNMC 264
IP AF ++ L+ L L +N +E IP + F +
Sbjct: 127 -------------------------IPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIP 160
Query: 265 SLNELYLLNNKLSGQLSE-FIQNLSSGCTVNSLEGLCLYDNDITGPIPDLGGFSSLKELY 323
SL L L K +SE + LS+ +N +C IP+L L EL
Sbjct: 161 SLRRLDLGELKRLSYISEGAFEGLSNLRYLNL--AMCNLRE-----IPNLTPLIKLDELD 213
Query: 324 LGENSLNGTINKSLNHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLYLANNPLTMKLS 383
L N L+ S L L+ L + S VI F N+ +L + LA+N LT+ L
Sbjct: 214 LSGNHLSAIRPGSFQGLMHLQKLWMI-QSQIQVIERNAFDNLQSLVEINLAHNNLTL-LP 271
Query: 384 HDWVPPFQ 391
HD P
Sbjct: 272 HDLFTPLH 279
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 73/164 (44%), Gaps = 14/164 (8%)
Query: 217 NILHLNLASNSLQGPIPEAFQHMVSLRFLALSSNELEGGIPKFFGNMCSLNELYLLNNKL 276
N+ +L L N L A + + +L +L L+ N+L+ F + +L EL L+ N+L
Sbjct: 64 NVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQL 121
Query: 277 SGQLSEFIQNLSSGC--TVNSLEGLCLYDNDITG-PIPDLGGFSSLKELYLGENSLNGTI 333
Q+L G + +L L L N + P ++L EL L N L
Sbjct: 122 --------QSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLP 173
Query: 334 NKSLNHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLYLANNP 377
+ L +L+ L L N V + F +++LQ ++L +NP
Sbjct: 174 EGVFDKLTQLKDLRLYQNQLKSV-PDGVFDRLTSLQYIWLHDNP 216
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 58/128 (45%), Gaps = 14/128 (10%)
Query: 186 FNLSTSIETLDLFDNNLPS--SSVYPWFLNLSRNILHLNLASNSLQGPIPEAFQHMVSLR 243
F+ T+++ L L +N L S V+ NL+ +LNLA N LQ F + +L
Sbjct: 105 FDKLTNLKELVLVENQLQSLPDGVFDKLTNLT----YLNLAHNQLQSLPKGVFDKLTNLT 160
Query: 244 FLALSSNELEGGIPKFFGNMCSLNELYLLNNKLSGQLSEFIQNLSSGCTVNSLEGLCLYD 303
L LS N+L+ F + L +L L N+L L+ SL+ + L+D
Sbjct: 161 ELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLT------SLQYIWLHD 214
Query: 304 N--DITGP 309
N D T P
Sbjct: 215 NPWDCTCP 222
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 51/184 (27%), Positives = 80/184 (43%), Gaps = 19/184 (10%)
Query: 193 ETLDLFDNNLPSSSVYPWFLNLSRNILHLNLASNSLQGPIPEAFQHMVSLRFLALSSNEL 252
E LDL L + S F L++ + LNL N LQ F + L L L++N+L
Sbjct: 38 EKLDLQSTGLATLS-DATFRGLTK-LTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL 95
Query: 253 EGGIPKFFGNMCSLNELYLLNNKLSGQLSEFIQNLSSGCTVNSLEGLCLYDNDITG-PIP 311
F ++ L++LYL N+L S L+ L+ L L N + P
Sbjct: 96 ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLT------KLKELRLNTNQLQSIPAG 149
Query: 312 DLGGFSSLKELYLGENSLNGTINKSLNHLFKLETLSLDGNSFTGVISETFFSNMSNLQML 371
++L+ L L N L + + + L KL+T++L GN F + S ++L
Sbjct: 150 AFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF----------DCSRCEIL 199
Query: 372 YLAN 375
YL+
Sbjct: 200 YLSQ 203
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 82/295 (27%), Positives = 126/295 (42%), Gaps = 46/295 (15%)
Query: 313 LGGFSSLKELYLGENSLNGTINKSLNHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLY 372
L G S+LK+L L N S ++ L LS+ GN+ + N+ NL+ L
Sbjct: 297 LVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLREL- 355
Query: 373 LANNPLTMKLSHDWVPP-----FQLKWLS-LASCKMGPNFPKWLRTQS-----QLILLDI 421
LSHD + QL+ LS L S + N P L+T++ QL LLD+
Sbjct: 356 --------DLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDL 407
Query: 422 SNTGIS-GTVPDWFWDLSVELFFLNLSNNHIKGKLPDLSFLRSDDIVVDISSNHFTGQIP 480
+ T + F +L + L LNLS++ ++DISS +P
Sbjct: 408 AFTRLKVKDAQSPFQNLHL-LKVLNLSHS-----------------LLDISSEQLFDGLP 449
Query: 481 PLPSNSTFLNLSKNKF-SGSITFLCSIIE-NTWNIFDLSSNLLSGELPDCWLNFNSLFIL 538
L LNL N F G+I S+ I LS LS + + + +
Sbjct: 450 AL----QHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHV 505
Query: 539 NLANNSFSGKIPDSMGFLHNIRTLSLNNNRLTRELPSSLKNCSQLRVLDLRNNAL 593
+L++N + +++ L I L+L +N ++ LPS L SQ R ++LR N L
Sbjct: 506 DLSHNRLTSSSIEALSHLKGIY-LNLASNHISIILPSLLPILSQQRTINLRQNPL 559
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 128/502 (25%), Positives = 211/502 (42%), Gaps = 71/502 (14%)
Query: 322 LYLGENSLNGTINKSLNHLFKLETLSLDGNSFTGVISETF--FSNMSNLQMLYLANNPLT 379
+++ E +L+G K+L HLF ++T G+ S F N L+ LYL +N ++
Sbjct: 94 IFMAETALSGP--KALKHLFFIQT---------GISSIDFIPLHNQKTLESLYLGSNHIS 142
Query: 380 -MKLSHDWVPPFQLKWLSLASCKMGPNFPKWLRT--QSQLILLDISNTGISGTVPDWFWD 436
+KL + P +LK L + + + + + Q+ + L+++ I+G P F
Sbjct: 143 SIKLPKGF-PTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDS 201
Query: 437 LSVE-----------LFFLNLSNNHIK----GKLPDLSFLRSDDIVVDISSNHFTGQIPP 481
+ + F L N+ I+ G D+ DD DIS F G +
Sbjct: 202 AVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDM-----DD--EDISPAVFEG-LCE 253
Query: 482 LPSNSTFLNLSKNKFSGSITFLCSIIENTWNIF------DLSSNLLSGELPDCWLNFNSL 535
+ S +NL K+ F +I NT++ F DL++ LS ELP + ++L
Sbjct: 254 MSVES--INLQKHYF-------FNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTL 303
Query: 536 FILNLANNSFSGKIPDSMGFLHNIRTLSLNNNRLTRELPSS-LKNCSQLRVLDLRNNALF 594
L L+ N F S ++ LS+ N EL + L+N LR LDL ++
Sbjct: 304 KKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHD--- 360
Query: 595 GEIPIWIGGNLQNLIVLSLKSNNFHGNIPFQLCYLAF-----IQVLDLSLNNISGKIPKC 649
+I NLQ + L+S N N P L AF +++LDL+ + K +
Sbjct: 361 -DIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQS 419
Query: 650 -FSNFSTMIQERSSDPIIGMANRIWVLPGYVYQYRYLDNILLTWKGSEHEYKS--TLGFV 706
F N + S ++ +++ Q+ L KG+ + S TLG +
Sbjct: 420 PFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFP-KGNIQKTNSLQTLGRL 478
Query: 707 KCLDLSSNKLCGPILEEIMDLDGLIALNLSRNNLTGPISPKIGQLKSLDFLDLSRNHFSG 766
+ L LS L L + ++LS N LT + LK + +L+L+ NH S
Sbjct: 479 EILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISI 537
Query: 767 SIPSSLVKLCGLGVLDLSYNNL 788
+PS L L ++L N L
Sbjct: 538 ILPSLLPILSQQRTINLRQNPL 559
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 40.4 bits (93), Expect = 0.005, Method: Composition-based stats.
Identities = 32/84 (38%), Positives = 41/84 (48%), Gaps = 6/84 (7%)
Query: 299 LCLYDNDITGPIPDLGGFSSL---KELYLGENSLNGTINKSLNHLFKLETLSLDGNSFTG 355
L L+DN IT P G F SL KELYLG N L + L +L L L N T
Sbjct: 45 LYLHDNQITKLEP--GVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLT- 101
Query: 356 VISETFFSNMSNLQMLYLANNPLT 379
V+ F + +L+ L++ N LT
Sbjct: 102 VLPSAVFDRLVHLKELFMCCNKLT 125
Score = 32.7 bits (73), Expect = 0.85, Method: Composition-based stats.
Identities = 44/144 (30%), Positives = 64/144 (44%), Gaps = 16/144 (11%)
Query: 188 LSTSIETLDLFDNNLPSSSVYPWFLNLSRNILHLNLASNSLQGPIPEA-FQHMVSLRFLA 246
+ T+ + L L DN + + + P + N+ L L SN L G +P F + L L
Sbjct: 38 IPTNAQILYLHDNQI--TKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLD 94
Query: 247 LSSNELEGGIPKFFGNMCSLNELYLLNNKLSGQLSEFIQNLSSGCTVNSLEGLCLYDNDI 306
L +N+L F + L EL++ NKL+ +L I+ L+ L L L N +
Sbjct: 95 LGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLT------HLTHLALDQNQL 147
Query: 307 TGPIPDLGGF---SSLKELYLGEN 327
IP G F SSL YL N
Sbjct: 148 KS-IPH-GAFDRLSSLTHAYLFGN 169
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 89/204 (43%), Gaps = 39/204 (19%)
Query: 187 NLSTSIETLDLFDNNLPSSSVYPWFLNLSRNILHLNLASNSLQ--GPIPEAFQHMVSLRF 244
NL +S+ L + DN + V + RN+ + + N L+ G P AF + L +
Sbjct: 120 NLPSSLVELRIHDNRI--RKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNY 176
Query: 245 LALSSNELEGGIPKFFGNMCSLNELYLLNNKLSGQLSEFIQNLSSGCTVNSLEGLCLYDN 304
L +S +L G IPK +LNEL+L +NK + ++E
Sbjct: 177 LRISEAKLTG-IPKDLPE--TLNELHLDHNK-----------------IQAIE------- 209
Query: 305 DITGPIPDLGGFSSLKELYLGENSLNGTINKSLNHLFKLETLSLDGNSFTGVISETFFSN 364
+ DL +S L L LG N + N SL+ L L L LD N + V + +
Sbjct: 210 -----LEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAG--LPD 262
Query: 365 MSNLQMLYLANNPLTMKLSHDWVP 388
+ LQ++YL N +T +D+ P
Sbjct: 263 LKLLQVVYLHTNNITKVGVNDFCP 286
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 64/222 (28%), Positives = 95/222 (42%), Gaps = 53/222 (23%)
Query: 418 LLDISNTGISGTVPDWFWDLSVELFFLNLSNNHIKGKLPDLSF--LRSDDIVVDISSNHF 475
LLD+ N IS D F L L+ L L NN I K+ + +F LR + IS NH
Sbjct: 58 LLDLQNNDISELRKDDFKGLQ-HLYALVLVNNKI-SKIHEKAFSPLRKLQKLY-ISKNHL 114
Query: 476 TGQIPP-LPSNSTFLNLSKNK--------FSGSITFLC-----SIIENT----------- 510
+IPP LPS+ L + N+ FSG C + +EN+
Sbjct: 115 V-EIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLK 173
Query: 511 WNIFDLSSNLLSG---ELPDCW------------------LNFNSLFILNLANNSFSGKI 549
N +S L+G +LP+ L ++ L+ L L +N
Sbjct: 174 LNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIE 233
Query: 550 PDSMGFLHNIRTLSLNNNRLTRELPSSLKNCSQLRVLDLRNN 591
S+ FL +R L L+NN+L+R +P+ L + L+V+ L N
Sbjct: 234 NGSLSFLPTLRELHLDNNKLSR-VPAGLPDLKLLQVVYLHTN 274
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 78/191 (40%), Gaps = 37/191 (19%)
Query: 217 NILHLNLASNSLQGPIPEAFQHMVSLRFLALSSNELEGGIPKFFGNMCSLNELYLLNNKL 276
N +LNL N++Q + F+H+ L L L N + F + SLN L L +N L
Sbjct: 76 NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWL 135
Query: 277 SGQLSEFIQNLSSGCTVNSLEGLCLYDNDITGPIP-------------DLGGFSSLKELY 323
+ S + LS L L L +N I IP DLG L+ Y
Sbjct: 136 TVIPSGAFEYLS------KLRELWLRNNPIES-IPSYAFNRVPSLMRLDLGELKKLE--Y 186
Query: 324 LGENSLNGTIN--------------KSLNHLFKLETLSLDGNSFTGVISETFFSNMSNLQ 369
+ E + G N +L L LE L + GN F I F +S+L+
Sbjct: 187 ISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPE-IRPGSFHGLSSLK 245
Query: 370 MLYLANNPLTM 380
L++ N+ +++
Sbjct: 246 KLWVMNSQVSL 256
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 66/253 (26%), Positives = 108/253 (42%), Gaps = 29/253 (11%)
Query: 317 SSLKELYLGENSLNGTINKSLNHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLYLANN 376
S+ + L L EN++ + HL LE L L NS I F+ +++L L L +N
Sbjct: 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQ-IEVGAFNGLASLNTLELFDN 133
Query: 377 PLTMKLS--HDWVPPFQLKWLSLASCKMGPNFPKWLRTQSQLILLDISNTGISGTVPDWF 434
LT+ S +++ + WL + P++ L+ LD+ + +
Sbjct: 134 WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYA--FNRVPSLMRLDLGELKKLEYISEGA 191
Query: 435 WDLSVELFFLNLSNNHIKGKLPDLSFLRSDDIVVDISSNHFTGQIPPLPSNSTFLNLSKN 494
++ L +LNL +IK +P+L+ L + +++S NHF +I P +F LS
Sbjct: 192 FEGLFNLKYLNLGMCNIK-DMPNLTPLVGLE-ELEMSGNHFP-EIRP----GSFHGLSSL 244
Query: 495 KFSGSITFLCSIIENTWNIFDLSSNLLSGELPDCWLNFNSLFILNLANNSFSGKIPDSMG 554
K + S+IE N FD SL LNLA+N+ S D
Sbjct: 245 KKLWVMNSQVSLIER--NAFD---------------GLASLVELNLAHNNLSSLPHDLFT 287
Query: 555 FLHNIRTLSLNNN 567
L + L L++N
Sbjct: 288 PLRYLVELHLHHN 300
Score = 29.6 bits (65), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 65/234 (27%), Positives = 104/234 (44%), Gaps = 43/234 (18%)
Query: 161 NLHYLKSLVLRSCALPPINPSFIWHFNLSTSIETLDLFDNNLPSSSVYPWFLNLSRNILH 220
+LH+L+ L L ++ I + FN S+ TL+LFDN L +V P
Sbjct: 97 HLHHLEVLQLGRNSIRQIE---VGAFNGLASLNTLELFDNWL---TVIP----------- 139
Query: 221 LNLASNSLQGPIPEAFQHMVSLRFLALSSNELEGGIPKF-FGNMCSLNELYLLNNKLSGQ 279
AF+++ LR L L +N +E IP + F + SL L L G+
Sbjct: 140 ------------SGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDL------GE 180
Query: 280 LSEFIQNLSSGC--TVNSLEGLCLYDNDITGPIPDLGGFSSLKELYLGENSLNGTINKSL 337
L + ++ +S G + +L+ L L +I +P+L L+EL + N S
Sbjct: 181 LKK-LEYISEGAFEGLFNLKYLNLGMCNIKD-MPNLTPLVGLEELEMSGNHFPEIRPGSF 238
Query: 338 NHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLYLANNPLTMKLSHDWVPPFQ 391
+ L L+ L + NS +I F +++L L LA+N L+ L HD P +
Sbjct: 239 HGLSSLKKLWV-MNSQVSLIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLR 290
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 39.7 bits (91), Expect = 0.007, Method: Composition-based stats.
Identities = 55/187 (29%), Positives = 79/187 (42%), Gaps = 15/187 (8%)
Query: 216 RNILHLNLASNSLQGPIPEAFQHMVSLRFLALSSN-ELEGGIPKFFGNMCSLNELYLLNN 274
RN+ L L SN+L G AF + L L LS N +L P F + L+ L+L
Sbjct: 55 RNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRC 114
Query: 275 KLSGQLSEFIQNLSSGC--TVNSLEGLCLYDNDITGPIPD--LGGFSSLKELYLGENSLN 330
L Q L G + +L+ L L DN++ +PD +L L+L N +
Sbjct: 115 GL--------QELGPGLFRGLAALQYLYLQDNNLQA-LPDNTFRDLGNLTHLFLHGNRIP 165
Query: 331 GTINKSLNHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLYLANNPLTMKLSHDWVPPF 390
+ L L+ L L N V F ++ L LYL N L+M + VP
Sbjct: 166 SVPEHAFRGLHSLDRLLLHQNHVARVHPHA-FRDLGRLMTLYLFANNLSMLPAEVLVPLR 224
Query: 391 QLKWLSL 397
L++L L
Sbjct: 225 SLQYLRL 231
Score = 38.9 bits (89), Expect = 0.014, Method: Composition-based stats.
Identities = 46/146 (31%), Positives = 65/146 (44%), Gaps = 17/146 (11%)
Query: 162 LHYLKSLVLRSCALPPINPSFIWHFNLSTSIETLDLFDNNL---PSSSVYPWFLNLSRNI 218
L +L +L L C L + P F +++ L L DNNL P ++ F +L N+
Sbjct: 103 LGHLHTLHLDRCGLQELGPGL---FRGLAALQYLYLQDNNLQALPDNT----FRDLG-NL 154
Query: 219 LHLNLASNSLQGPIPEAFQHMVSLRFLALSSNELEGGIPKFFGNMCSLNELYLLNNKLSG 278
HL L N + AF+ + SL L L N + P F ++ L LYL N LS
Sbjct: 155 THLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLSM 214
Query: 279 QLSEFIQNLSSGCTVNSLEGLCLYDN 304
+E + L SL+ L L DN
Sbjct: 215 LPAEVLVPL------RSLQYLRLNDN 234
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 74/184 (40%), Gaps = 38/184 (20%)
Query: 213 NLSRNILHLNLASNSLQGPIPEAFQHMVSLRFLALSSNELEGGIPKFFGNMCSLNELYLL 272
NL I + L N+++ P AF LR + LS+N++ P F + SLN L L
Sbjct: 29 NLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLY 88
Query: 273 NNKLSGQLSEFIQNLSSGCTVNSLEGLCLYDNDITGPIPDLGGFSSLKELYLGENSLNGT 332
NK ++E ++L G SL+ L L N +N
Sbjct: 89 GNK----ITELPKSL-------------------------FEGLFSLQLLLLNANKINXL 119
Query: 333 INKSLNHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLYLANNPLTMKLSHDWVPPFQL 392
+ L L LSL N I++ FS + +Q ++LA NP ++ L
Sbjct: 120 RVDAFQDLHNLNLLSLYDNKLQ-TIAKGTFSPLRAIQTMHLAQNP--------FICDCHL 170
Query: 393 KWLS 396
KWL+
Sbjct: 171 KWLA 174
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 53/125 (42%), Gaps = 1/125 (0%)
Query: 516 LSSNLLSGELPDCWLNFNSLFILNLANNSFSGKIPDSMGFLHNIRTLSLNNNRLTRELPS 575
L N + P + + L ++L+NN S PD+ L ++ +L L N++T ELP
Sbjct: 39 LEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-ELPK 97
Query: 576 SLKNCSQLRVLDLRNNALFGEIPIWIGGNLQNLIVLSLKSNNFHGNIPFQLCYLAFIQVL 635
SL L L N + + +L NL +LSL N L IQ +
Sbjct: 98 SLFEGLFSLQLLLLNANKINXLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTM 157
Query: 636 DLSLN 640
L+ N
Sbjct: 158 HLAQN 162
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 74/184 (40%), Gaps = 38/184 (20%)
Query: 213 NLSRNILHLNLASNSLQGPIPEAFQHMVSLRFLALSSNELEGGIPKFFGNMCSLNELYLL 272
NL I + L N+++ P AF LR + LS+N++ P F + SLN L L
Sbjct: 29 NLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLY 88
Query: 273 NNKLSGQLSEFIQNLSSGCTVNSLEGLCLYDNDITGPIPDLGGFSSLKELYLGENSLNGT 332
NK ++E ++L G SL+ L L N +N
Sbjct: 89 GNK----ITELPKSL-------------------------FEGLFSLQLLLLNANKINCL 119
Query: 333 INKSLNHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLYLANNPLTMKLSHDWVPPFQL 392
+ L L LSL N I++ FS + +Q ++LA NP ++ L
Sbjct: 120 RVDAFQDLHNLNLLSLYDNKLQ-TIAKGTFSPLRAIQTMHLAQNP--------FICDCHL 170
Query: 393 KWLS 396
KWL+
Sbjct: 171 KWLA 174
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 53/125 (42%), Gaps = 1/125 (0%)
Query: 516 LSSNLLSGELPDCWLNFNSLFILNLANNSFSGKIPDSMGFLHNIRTLSLNNNRLTRELPS 575
L N + P + + L ++L+NN S PD+ L ++ +L L N++T ELP
Sbjct: 39 LEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-ELPK 97
Query: 576 SLKNCSQLRVLDLRNNALFGEIPIWIGGNLQNLIVLSLKSNNFHGNIPFQLCYLAFIQVL 635
SL L L N + + +L NL +LSL N L IQ +
Sbjct: 98 SLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTM 157
Query: 636 DLSLN 640
L+ N
Sbjct: 158 HLAQN 162
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 37.7 bits (86), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 312 DLGGFSSLKELYLGENSLNGTINKSLNHLFKLETLSLDGNSFTGVISETFFSNMSNLQML 371
+ F L+EL L EN ++ + N+LF L TL L N +I F+ +SNL L
Sbjct: 51 EFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKL 109
Query: 372 YLANNPLTMKLSHDWVPPFQLKWLSLA 398
++ N + + L + + + LK L +
Sbjct: 110 DISENKIVILLDYMFQDLYNLKSLEVG 136
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 59/236 (25%), Positives = 104/236 (44%), Gaps = 17/236 (7%)
Query: 221 LNLASNSLQGPIPEAFQHMVSLRFLALSSNELEGGIPKFFGNMCSLNELYLLNNKLSGQL 280
L+L N ++ + F L L L+ N + P F N+ +L L L +N+L
Sbjct: 37 LDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK--- 93
Query: 281 SEFIQNLSSGCTVNSLEGLCLYDNDITGPIPDL-GGFSSLKELYLGENSLNGTINKSLNH 339
+ L +++L L + +N I + + +LK L +G+N L +++ +
Sbjct: 94 ---LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSG 150
Query: 340 LFKLETLSLDGNSFTGVISETFFSNMSNLQMLYLANNPLTMKLSHDWVPPFQLKWLSLAS 399
L LE L+L+ + T + +E S++ L +L L + + + + ++LK L ++
Sbjct: 151 LNSLEQLTLEKCNLTSIPTEA-LSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISH 209
Query: 400 ----CKMGPNFPKWLRTQSQLILLDISNTGISGTVPDWFWDLSVELFFLNLSNNHI 451
M PN L S L I++ ++ VP V L FLNLS N I
Sbjct: 210 WPYLDTMTPNCLYGLNLTS----LSITHCNLTA-VPYLAVRHLVYLRFLNLSYNPI 260
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 343 LETLSLDGNSFTGVISETFFSNMSNLQMLYLANNPLTMKLSHDWVPPFQLKW 394
L L++ GN T + E+ F ++ NL+ L L +NPL WV F+ +W
Sbjct: 298 LRVLNVSGNQLT-TLEESVFHSVGNLETLILDSNPLACDCRLLWV--FRRRW 346
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 37.7 bits (86), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 49/102 (48%), Gaps = 8/102 (7%)
Query: 281 SEFIQNLSSGC--TVNSLEGLCLYDNDITGPIPDLGGFSSLKEL---YLGENSLNGTINK 335
S +Q+L G + L L L N I +PD G F L +L YL EN L N
Sbjct: 37 SNKLQSLPHGVFDKLTQLTKLSLSQNQIQS-LPD-GVFDKLTKLTILYLHENKLQSLPNG 94
Query: 336 SLNHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLYLANNP 377
+ L +L+ L+LD N V + F +++LQ ++L NP
Sbjct: 95 VFDKLTQLKELALDTNQLKSV-PDGIFDRLTSLQKIWLHTNP 135
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 50/112 (44%), Gaps = 13/112 (11%)
Query: 220 HLNLASNSLQGPIPEAFQHMVSLRFLALSSNELEGGIPKFFGNMCSLNELYLLNNKLSGQ 279
L L SN LQ F + L L+LS N+++ F + L LYL NKL
Sbjct: 32 RLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKL--- 88
Query: 280 LSEFIQNLSSGC--TVNSLEGLCLYDNDITGPIPD--LGGFSSLKELYLGEN 327
Q+L +G + L+ L L N + +PD +SL++++L N
Sbjct: 89 -----QSLPNGVFDKLTQLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTN 134
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 37.7 bits (86), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 2/97 (2%)
Query: 188 LSTSIETLDLFDNNLPSSSVYPWFLNLSRNILHLNLASNSLQGPIPEAFQHMVSLRFLAL 247
+ T+ + L L+ N + + + P + + +LNLA N L F + L LAL
Sbjct: 38 IPTTTQVLHLYINQI--TKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLAL 95
Query: 248 SSNELEGGIPKFFGNMCSLNELYLLNNKLSGQLSEFI 284
N+L+ F N+ SL +YL NN + S+ +
Sbjct: 96 HINQLKSIPMGVFDNLKSLTHIYLFNNPWDCECSDIL 132
Score = 29.6 bits (65), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 35/80 (43%), Gaps = 6/80 (7%)
Query: 301 LYDNDITGPIPDLGGFSSLKELY---LGENSLNGTINKSLNHLFKLETLSLDGNSFTGVI 357
LY N IT P G F SL +L L N L + L KL L+L N I
Sbjct: 47 LYINQITKLEP--GVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQLKS-I 103
Query: 358 SETFFSNMSNLQMLYLANNP 377
F N+ +L +YL NNP
Sbjct: 104 PMGVFDNLKSLTHIYLFNNP 123
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 37.7 bits (86), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 83/312 (26%), Positives = 135/312 (43%), Gaps = 23/312 (7%)
Query: 489 LNLSKNKFS--GSITFLCSIIENTWNIFDLSSNLLSGELPDCWLNFNSLFILNLANNSFS 546
+NL K++FS S TF C DL++ L+G LP NSL L L NSF
Sbjct: 258 INLQKHRFSDLSSSTFRCFT---RVQELDLTAAHLNG-LPSGIEGMNSLKKLVLNANSFD 313
Query: 547 GKIPDSMGFLHNIRTLSLNNNRLTRELPSS-LKNCSQLRVLDLRNNALFGEIPIWIGGNL 605
+ ++R L + N +L + L+ L+ LDL + +I NL
Sbjct: 314 QLCQINAASFPSLRDLYIKGNMRKLDLGTRCLEKLENLQKLDLSH----SDIEASDCCNL 369
Query: 606 QNLIVLSLKSNNFHGNIPFQLCYLAF-----IQVLDLSLNNISGKIPKC-FSNFSTMIQE 659
Q + L+ N N P L AF +++LD++ ++ K P F N +
Sbjct: 370 QLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVL 429
Query: 660 RSSDPIIGMANRIWVLPGYVYQYRYLD---NILLTWKGSEHEYKSTLGFVKCLDLSSNKL 716
S ++ +N+ +L G + R+L+ N S+ +G ++ L LSS L
Sbjct: 430 NLSHCLLDTSNQ-HLLAG-LQDLRHLNLQGNSFQDGSISKTNLLQMVGSLEILILSSCNL 487
Query: 717 CGPILEEIMDLDGLIALNLSRNNLTGPISPKIGQLKSLDFLDLSRNHFSGSIPSSLVKLC 776
+ L + L+LS N+LTG + LK L +L+++ N+ P L L
Sbjct: 488 LSIDQQAFHGLRNVNHLDLSHNSLTGDSMDALSHLKGL-YLNMASNNIRIIPPHLLPALS 546
Query: 777 GLGVLDLSYNNL 788
+++LS+N L
Sbjct: 547 QQSIINLSHNPL 558
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 79/293 (26%), Positives = 124/293 (42%), Gaps = 42/293 (14%)
Query: 313 LGGFSSLKELYLGENSLNGTINKSLNHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLY 372
+ G +SLK+L L NS + + L L + GN + + NLQ L
Sbjct: 296 IEGMNSLKKLVLNANSFDQLCQINAASFPSLRDLYIKGNMRKLDLGTRCLEKLENLQKLD 355
Query: 373 LANNPLTMKLSHDWVPPFQLKWL-SLASCKMGPNFPKWLRTQS-----QLILLDISNTGI 426
L+++ + QLK L L + N P L Q+ QL LLD++ T +
Sbjct: 356 LSHSDIEAS----DCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHL 411
Query: 427 SGTVPDW-FWDLSVELFFLNLSNNHIKGKLPDLSFLRSDDIVVDISSNHFTGQIPPLPSN 485
P F +L + L LNLS+ ++D S+ H + L
Sbjct: 412 HVKAPHSPFQNLHL-LRVLNLSH-----------------CLLDTSNQHLLAGLQDL--- 450
Query: 486 STFLNLSKNKFS-GSI--TFLCSIIENTWNIFDLSSNLLSGELPDCWLNFNSLFILNLAN 542
LNL N F GSI T L ++ + + S NLLS + + ++ L+L++
Sbjct: 451 -RHLNLQGNSFQDGSISKTNLLQMVGSLEILILSSCNLLSID-QQAFHGLRNVNHLDLSH 508
Query: 543 NSFSGKIPDSMGFLHNIRTLSLN--NNRLTRELPSSLKNCSQLRVLDLRNNAL 593
NS +G DSM L +++ L LN +N + P L SQ +++L +N L
Sbjct: 509 NSLTG---DSMDALSHLKGLYLNMASNNIRIIPPHLLPALSQQSIINLSHNPL 558
Score = 30.0 bits (66), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 61/247 (24%), Positives = 103/247 (41%), Gaps = 33/247 (13%)
Query: 192 IETLDLFDNNLPSSSVYPWFLNLSRNILHLNLASNSLQGPIPEAFQHMVSLRFLALSSNE 251
++ LDL +++ +S L R++ +LNL+ N G +AF+ L L ++
Sbjct: 351 LQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTH 410
Query: 252 LEGGIPKFFGNMCSLNELYLLNNKLSGQLSEFIQNLSSGCTVNSLEGLCLYDNDITGPIP 311
L P L+LL + NLS CL D T
Sbjct: 411 LHVKAPH-----SPFQNLHLLR----------VLNLSH----------CLLD---TSNQH 442
Query: 312 DLGGFSSLKELYLGENSL-NGTINKS--LNHLFKLETLSLDGNSFTGVISETFFSNMSNL 368
L G L+ L L NS +G+I+K+ L + LE L L + I + F + N+
Sbjct: 443 LLAGLQDLRHLNLQGNSFQDGSISKTNLLQMVGSLEILILSSCNLLS-IDQQAFHGLRNV 501
Query: 369 QMLYLANNPLTMKLSHDWVPPFQLKWLSLASCKMGPNFPKWLRTQSQLILLDISNTGISG 428
L L++N LT S D + + +L++AS + P L SQ ++++S+ +
Sbjct: 502 NHLDLSHNSLTGD-SMDALSHLKGLYLNMASNNIRIIPPHLLPALSQQSIINLSHNPLDC 560
Query: 429 TVPDWFW 435
T + +
Sbjct: 561 TCSNIHF 567
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 37.4 bits (85), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 63/255 (24%), Positives = 105/255 (41%), Gaps = 47/255 (18%)
Query: 346 LSLDGNSFTGVISETFFSNMSNLQMLYLANNPLTMKLSHDWVPPFQLKWLSLASCKMGPN 405
L L N T I + F N+ NL L L NN ++ + P +L+ L L+ ++
Sbjct: 57 LDLQNNKITE-IKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKEL 115
Query: 406 FPKWLRTQSQLILLDISNTGISGTVPDWFWDLSVELFFLNLSNNHIKGK---------LP 456
K +T +L + + T + +V F L+ ++ + L N +K +
Sbjct: 116 PEKMPKTLQELRVHENEITKVRKSV---FNGLN-QMIVVELGTNPLKSSGIENGAFQGMK 171
Query: 457 DLSFLRSDDIVVDISSNHFTGQIPPLPSNSTFLNLSKNKFSGSITFLCSIIENTWNIFDL 516
LS++R I+ + T LP + T L+L NK I +
Sbjct: 172 KLSYIR-------IADTNITTIPQGLPPSLTELHLDGNK-----------------ITKV 207
Query: 517 SSNLLSGELPDCWLNFNSLFILNLANNSFSGKIPDSMGFLHNIRTLSLNNNRLTRELPSS 576
+ L G N+L L L+ NS S S+ ++R L LNNN+L + +P
Sbjct: 208 DAASLKG--------LNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK-VPGG 258
Query: 577 LKNCSQLRVLDLRNN 591
L + ++V+ L NN
Sbjct: 259 LADHKYIQVVYLHNN 273
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 59/224 (26%), Positives = 89/224 (39%), Gaps = 54/224 (24%)
Query: 211 FLNLSRNILHLNLASNSLQGPIPEAFQHMVSLRFLALSSN---ELEGGIPKFFGNMCSLN 267
F NL +N+ L L +N + P AF +V L L LS N EL +PK +L
Sbjct: 72 FKNL-KNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPK------TLQ 124
Query: 268 ELYLLNNKLSGQLSEFIQNL--------------SSGCTVNSLEGLC------LYDNDIT 307
EL + N+++ L SSG + +G+ + D +IT
Sbjct: 125 ELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT 184
Query: 308 GPIPDLGGFSSLKELYLGENSLNGTINKSLNHLFKLETLSLDGNSFTGVISETF------ 361
IP G SL EL+L N + SL L L L L NS + V + +
Sbjct: 185 T-IPQ-GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHL 242
Query: 362 ----------------FSNMSNLQMLYLANNPLTMKLSHDWVPP 389
++ +Q++YL NN ++ S+D+ PP
Sbjct: 243 RELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPP 286
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 65/147 (44%), Gaps = 11/147 (7%)
Query: 513 IFDLSSNLLSGELPDCWLNFNSLFILNLANNSFSGKIPDSMGFLHNIRTLSLNNNRLTRE 572
+ DL +N ++ + N +L L L NN S P + L + L L+ N+L +E
Sbjct: 56 LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL-KE 114
Query: 573 LPSSL-KNCSQLRVLDLRNNALFGEIPIWIGGNLQNLIVLSLKSNNFHG----NIPFQ-L 626
LP + K +LRV + ++ + L +IV+ L +N N FQ +
Sbjct: 115 LPEKMPKTLQELRVHENE----ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM 170
Query: 627 CYLAFIQVLDLSLNNISGKIPKCFSNF 653
L++I++ D ++ I +P +
Sbjct: 171 KKLSYIRIADTNITTIPQGLPPSLTEL 197
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 37.4 bits (85), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 63/255 (24%), Positives = 105/255 (41%), Gaps = 47/255 (18%)
Query: 346 LSLDGNSFTGVISETFFSNMSNLQMLYLANNPLTMKLSHDWVPPFQLKWLSLASCKMGPN 405
L L N T I + F N+ NL L L NN ++ + P +L+ L L+ ++
Sbjct: 57 LDLQNNKITE-IKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKEL 115
Query: 406 FPKWLRTQSQLILLDISNTGISGTVPDWFWDLSVELFFLNLSNNHIKGK---------LP 456
K +T +L + + T + +V F L+ ++ + L N +K +
Sbjct: 116 PEKMPKTLQELRVHENEITKVRKSV---FNGLN-QMIVVELGTNPLKSSGIENGAFQGMK 171
Query: 457 DLSFLRSDDIVVDISSNHFTGQIPPLPSNSTFLNLSKNKFSGSITFLCSIIENTWNIFDL 516
LS++R I+ + T LP + T L+L NK I +
Sbjct: 172 KLSYIR-------IADTNITTIPQGLPPSLTELHLDGNK-----------------ITKV 207
Query: 517 SSNLLSGELPDCWLNFNSLFILNLANNSFSGKIPDSMGFLHNIRTLSLNNNRLTRELPSS 576
+ L G N+L L L+ NS S S+ ++R L LNNN+L + +P
Sbjct: 208 DAASLKG--------LNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK-VPGG 258
Query: 577 LKNCSQLRVLDLRNN 591
L + ++V+ L NN
Sbjct: 259 LADHKYIQVVYLHNN 273
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 59/224 (26%), Positives = 89/224 (39%), Gaps = 54/224 (24%)
Query: 211 FLNLSRNILHLNLASNSLQGPIPEAFQHMVSLRFLALSSN---ELEGGIPKFFGNMCSLN 267
F NL +N+ L L +N + P AF +V L L LS N EL +PK +L
Sbjct: 72 FKNL-KNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPK------TLQ 124
Query: 268 ELYLLNNKLSGQLSEFIQNL--------------SSGCTVNSLEGLC------LYDNDIT 307
EL + N+++ L SSG + +G+ + D +IT
Sbjct: 125 ELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT 184
Query: 308 GPIPDLGGFSSLKELYLGENSLNGTINKSLNHLFKLETLSLDGNSFTGVISETF------ 361
IP G SL EL+L N + SL L L L L NS + V + +
Sbjct: 185 T-IPQ-GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHL 242
Query: 362 ----------------FSNMSNLQMLYLANNPLTMKLSHDWVPP 389
++ +Q++YL NN ++ S+D+ PP
Sbjct: 243 RELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPP 286
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 65/147 (44%), Gaps = 11/147 (7%)
Query: 513 IFDLSSNLLSGELPDCWLNFNSLFILNLANNSFSGKIPDSMGFLHNIRTLSLNNNRLTRE 572
+ DL +N ++ + N +L L L NN S P + L + L L+ N+L +E
Sbjct: 56 LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL-KE 114
Query: 573 LPSSL-KNCSQLRVLDLRNNALFGEIPIWIGGNLQNLIVLSLKSNNFHG----NIPFQ-L 626
LP + K +LRV + ++ + L +IV+ L +N N FQ +
Sbjct: 115 LPEKMPKTLQELRVHENE----ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM 170
Query: 627 CYLAFIQVLDLSLNNISGKIPKCFSNF 653
L++I++ D ++ I +P +
Sbjct: 171 KKLSYIRIADTNITTIPQGLPPSLTEL 197
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 37.0 bits (84), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 116/453 (25%), Positives = 190/453 (41%), Gaps = 83/453 (18%)
Query: 241 SLRFLALSSNELEGGIPKFFGNMCSLNELYLLNNKLSGQLSEFIQNLSSGCTVNSLEGLC 300
SL+ L LSSN+++ P F + L L+L N +L L+E L S+ L
Sbjct: 172 SLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTE---KLCLELANTSIRNLS 228
Query: 301 LYDNDI--TGPIPDLG-GFSSLKELYLGENSLNGTINKSLNHLFKLETLSLDGNSFTGVI 357
L ++ + T LG +++L L L N+LN N S L +LE L+ N+ +
Sbjct: 229 LSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLF 288
Query: 358 SETFFSNMSNLQMLYLANNPLTMKLSHDWVPPFQLKWLSLASCKMGPNFP-KWLRTQSQL 416
S + + N++ L L + F + +SLAS +F +WL+ L
Sbjct: 289 SHSLHG-LFNVRYLNLKRS-------------FTKQSISLASLPKIDDFSFQWLKCLEHL 334
Query: 417 ILLDISNTGISGTVPDWFWDLSVELFFLNLSNNHIKGKLPDLSFLRSDDIVVDISSNHFT 476
++ + I G + F L + L +L+LSN+ + LR+ +S H
Sbjct: 335 ---NMEDNDIPGIKSNMFTGL-INLKYLSLSNS--------FTSLRTLTNETFVSLAHSP 382
Query: 477 GQIPPLPSNSTFLNLSKNKFSGSITFLCSIIENTWNIFDLSSNLLSGELP---------- 526
I LNL+KNK S + S + + + DL N + EL
Sbjct: 383 LHI---------LNLTKNKISKIESDAFSWLGH-LEVLDLGLNEIGQELTGQEWRGLENI 432
Query: 527 -DCWLNFNSLFILNLANNSFS------------------GKIPDSMGFLHNIRTLSLNNN 567
+ +L++N L L NSF+ P L N+ L L+NN
Sbjct: 433 FEIYLSYNK--YLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNN 490
Query: 568 RLTRELPSSLKNCSQLRVLDLRNNALFG-------EIPIWIGGNLQNLIVLSLKSNNFHG 620
+ L+ +L +LDL++N L PI+ L +L +L+L+SN F
Sbjct: 491 NIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGF-D 549
Query: 621 NIPFQLCYLAF-IQVLDLSLNNISGKIPKCFSN 652
IP ++ F ++++DL LNN++ F+N
Sbjct: 550 EIPVEVFKDLFELKIIDLGLNNLNTLPASVFNN 582
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 47/98 (47%), Gaps = 6/98 (6%)
Query: 692 WKGSEHEYKSTLGFVKCLDLSSNKLCGPILEEIMDLDGLIALNLSRNNLTGPISPKIGQL 751
W+G E+ ++ L + K L L+ N + L L+ ++ N+ SP L
Sbjct: 426 WRGLENIFEIYLSYNKYLQLTRNSFAL-----VPSLQRLMLRRVALKNVDSSPSP-FQPL 479
Query: 752 KSLDFLDLSRNHFSGSIPSSLVKLCGLGVLDLSYNNLS 789
++L LDLS N+ + L L L +LDL +NNL+
Sbjct: 480 RNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLA 517
Score = 29.6 bits (65), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 52/131 (39%), Gaps = 9/131 (6%)
Query: 467 VVDISSNHFTGQIPPLPSNSTFLNLSKNKF----SGSITFLCSIIENTWNIFDLSSNLLS 522
V D S T LP+N T LNL+ N+ + + T + D+ N +S
Sbjct: 8 VADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTS-----LDVGFNTIS 62
Query: 523 GELPDCWLNFNSLFILNLANNSFSGKIPDSMGFLHNIRTLSLNNNRLTRELPSSLKNCSQ 582
P+ L +LNL +N S + F N+ L L +N + + +
Sbjct: 63 KLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKN 122
Query: 583 LRVLDLRNNAL 593
L LDL +N L
Sbjct: 123 LITLDLSHNGL 133
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 37.0 bits (84), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 116/453 (25%), Positives = 190/453 (41%), Gaps = 83/453 (18%)
Query: 241 SLRFLALSSNELEGGIPKFFGNMCSLNELYLLNNKLSGQLSEFIQNLSSGCTVNSLEGLC 300
SL+ L LSSN+++ P F + L L+L N +L L+E L S+ L
Sbjct: 177 SLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTE---KLCLELANTSIRNLS 233
Query: 301 LYDNDI--TGPIPDLG-GFSSLKELYLGENSLNGTINKSLNHLFKLETLSLDGNSFTGVI 357
L ++ + T LG +++L L L N+LN N S L +LE L+ N+ +
Sbjct: 234 LSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLF 293
Query: 358 SETFFSNMSNLQMLYLANNPLTMKLSHDWVPPFQLKWLSLASCKMGPNFP-KWLRTQSQL 416
S + + N++ L L + F + +SLAS +F +WL+ L
Sbjct: 294 SHSLHG-LFNVRYLNLKRS-------------FTKQSISLASLPKIDDFSFQWLKCLEHL 339
Query: 417 ILLDISNTGISGTVPDWFWDLSVELFFLNLSNNHIKGKLPDLSFLRSDDIVVDISSNHFT 476
++ + I G + F L + L +L+LSN+ + LR+ +S H
Sbjct: 340 ---NMEDNDIPGIKSNMFTGL-INLKYLSLSNS--------FTSLRTLTNETFVSLAHSP 387
Query: 477 GQIPPLPSNSTFLNLSKNKFSGSITFLCSIIENTWNIFDLSSNLLSGELP---------- 526
I LNL+KNK S + S + + + DL N + EL
Sbjct: 388 LHI---------LNLTKNKISKIESDAFSWLGH-LEVLDLGLNEIGQELTGQEWRGLENI 437
Query: 527 -DCWLNFNSLFILNLANNSFS------------------GKIPDSMGFLHNIRTLSLNNN 567
+ +L++N L L NSF+ P L N+ L L+NN
Sbjct: 438 FEIYLSYNK--YLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNN 495
Query: 568 RLTRELPSSLKNCSQLRVLDLRNNALFG-------EIPIWIGGNLQNLIVLSLKSNNFHG 620
+ L+ +L +LDL++N L PI+ L +L +L+L+SN F
Sbjct: 496 NIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGF-D 554
Query: 621 NIPFQLCYLAF-IQVLDLSLNNISGKIPKCFSN 652
IP ++ F ++++DL LNN++ F+N
Sbjct: 555 EIPVEVFKDLFELKIIDLGLNNLNTLPASVFNN 587
Score = 30.8 bits (68), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 47/98 (47%), Gaps = 6/98 (6%)
Query: 692 WKGSEHEYKSTLGFVKCLDLSSNKLCGPILEEIMDLDGLIALNLSRNNLTGPISPKIGQL 751
W+G E+ ++ L + K L L+ N + L L+ ++ N+ SP L
Sbjct: 431 WRGLENIFEIYLSYNKYLQLTRNSFAL-----VPSLQRLMLRRVALKNVDSSPSP-FQPL 484
Query: 752 KSLDFLDLSRNHFSGSIPSSLVKLCGLGVLDLSYNNLS 789
++L LDLS N+ + L L L +LDL +NNL+
Sbjct: 485 RNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLA 522
Score = 29.6 bits (65), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 52/131 (39%), Gaps = 9/131 (6%)
Query: 467 VVDISSNHFTGQIPPLPSNSTFLNLSKNKF----SGSITFLCSIIENTWNIFDLSSNLLS 522
V D S T LP+N T LNL+ N+ + + T + D+ N +S
Sbjct: 13 VADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTS-----LDVGFNTIS 67
Query: 523 GELPDCWLNFNSLFILNLANNSFSGKIPDSMGFLHNIRTLSLNNNRLTRELPSSLKNCSQ 582
P+ L +LNL +N S + F N+ L L +N + + +
Sbjct: 68 KLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKN 127
Query: 583 LRVLDLRNNAL 593
L LDL +N L
Sbjct: 128 LITLDLSHNGL 138
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 37.0 bits (84), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 116/453 (25%), Positives = 190/453 (41%), Gaps = 83/453 (18%)
Query: 241 SLRFLALSSNELEGGIPKFFGNMCSLNELYLLNNKLSGQLSEFIQNLSSGCTVNSLEGLC 300
SL+ L LSSN+++ P F + L L+L N +L L+E L S+ L
Sbjct: 182 SLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTE---KLCLELANTSIRNLS 238
Query: 301 LYDNDI--TGPIPDLG-GFSSLKELYLGENSLNGTINKSLNHLFKLETLSLDGNSFTGVI 357
L ++ + T LG +++L L L N+LN N S L +LE L+ N+ +
Sbjct: 239 LSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLF 298
Query: 358 SETFFSNMSNLQMLYLANNPLTMKLSHDWVPPFQLKWLSLASCKMGPNFP-KWLRTQSQL 416
S + + N++ L L + F + +SLAS +F +WL+ L
Sbjct: 299 SHSLHG-LFNVRYLNLKRS-------------FTKQSISLASLPKIDDFSFQWLKCLEHL 344
Query: 417 ILLDISNTGISGTVPDWFWDLSVELFFLNLSNNHIKGKLPDLSFLRSDDIVVDISSNHFT 476
++ + I G + F L + L +L+LSN+ + LR+ +S H
Sbjct: 345 ---NMEDNDIPGIKSNMFTGL-INLKYLSLSNS--------FTSLRTLTNETFVSLAHSP 392
Query: 477 GQIPPLPSNSTFLNLSKNKFSGSITFLCSIIENTWNIFDLSSNLLSGELP---------- 526
I LNL+KNK S + S + + + DL N + EL
Sbjct: 393 LHI---------LNLTKNKISKIESDAFSWLGH-LEVLDLGLNEIGQELTGQEWRGLENI 442
Query: 527 -DCWLNFNSLFILNLANNSFS------------------GKIPDSMGFLHNIRTLSLNNN 567
+ +L++N L L NSF+ P L N+ L L+NN
Sbjct: 443 FEIYLSYNK--YLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNN 500
Query: 568 RLTRELPSSLKNCSQLRVLDLRNNALFG-------EIPIWIGGNLQNLIVLSLKSNNFHG 620
+ L+ +L +LDL++N L PI+ L +L +L+L+SN F
Sbjct: 501 NIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGF-D 559
Query: 621 NIPFQLCYLAF-IQVLDLSLNNISGKIPKCFSN 652
IP ++ F ++++DL LNN++ F+N
Sbjct: 560 EIPVEVFKDLFELKIIDLGLNNLNTLPASVFNN 592
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 47/98 (47%), Gaps = 6/98 (6%)
Query: 692 WKGSEHEYKSTLGFVKCLDLSSNKLCGPILEEIMDLDGLIALNLSRNNLTGPISPKIGQL 751
W+G E+ ++ L + K L L+ N + L L+ ++ N+ SP L
Sbjct: 436 WRGLENIFEIYLSYNKYLQLTRNSFAL-----VPSLQRLMLRRVALKNVDSSPSP-FQPL 489
Query: 752 KSLDFLDLSRNHFSGSIPSSLVKLCGLGVLDLSYNNLS 789
++L LDLS N+ + L L L +LDL +NNL+
Sbjct: 490 RNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLA 527
Score = 29.6 bits (65), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 52/131 (39%), Gaps = 9/131 (6%)
Query: 467 VVDISSNHFTGQIPPLPSNSTFLNLSKNKF----SGSITFLCSIIENTWNIFDLSSNLLS 522
V D S T LP+N T LNL+ N+ + + T + D+ N +S
Sbjct: 18 VADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTS-----LDVGFNTIS 72
Query: 523 GELPDCWLNFNSLFILNLANNSFSGKIPDSMGFLHNIRTLSLNNNRLTRELPSSLKNCSQ 582
P+ L +LNL +N S + F N+ L L +N + + +
Sbjct: 73 KLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKN 132
Query: 583 LRVLDLRNNAL 593
L LDL +N L
Sbjct: 133 LITLDLSHNGL 143
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 36.6 bits (83), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 40/77 (51%), Gaps = 11/77 (14%)
Query: 530 LNFNSLFILNLANNSFSGKIPDSMGFLHNIRTLSLNNNRLTRELPSSLKNCSQLRVLDLR 589
L+ ++L I N++ N F + L LN N LT ELP+ +KN S LRVLDL
Sbjct: 229 LDLSNLQIFNISANIFKYDF---------LTRLYLNGNSLT-ELPAEIKNLSNLRVLDLS 278
Query: 590 NNALFGEIPIWIGGNLQ 606
+N L +P +G Q
Sbjct: 279 HNRL-TSLPAELGSCFQ 294
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 36.6 bits (83), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 67/158 (42%), Gaps = 30/158 (18%)
Query: 220 HLNLASNSLQGPIPEAFQHMVSLRFLALSSNELEGGIPKFFGNMCSLNELYLLNNKLSGQ 279
+L+L +NSL+ F + SL L L N+L+ F + SL L L N+L
Sbjct: 32 YLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL--- 88
Query: 280 LSEFIQNLSSGCTVNSLEGLCLYDNDITGPIPDLGGFSSLKELYLGENSLNGTINKSLNH 339
Q+L +G ++D + LKEL L N L + +
Sbjct: 89 -----QSLPNG----------VFDK-----------LTQLKELALNTNQLQSLPDGVFDK 122
Query: 340 LFKLETLSLDGNSFTGVISETFFSNMSNLQMLYLANNP 377
L +L+ L L N V + F +++LQ ++L +NP
Sbjct: 123 LTQLKDLRLYQNQLKSV-PDGVFDRLTSLQYIWLHDNP 159
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 58/126 (46%), Gaps = 10/126 (7%)
Query: 186 FNLSTSIETLDLFDNNLPSSSVYPWFLNLSRNILHLNLASNSLQGPIPEAFQHMVSLRFL 245
F+ TS+ L L N L S+ N ++ +LNL++N LQ F + L+ L
Sbjct: 48 FDELTSLTQLYLGGNKL--QSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKEL 105
Query: 246 ALSSNELEGGIPKFFGNMCSLNELYLLNNKLSGQLSEFIQNLSSGCTVNSLEGLCLYDN- 304
AL++N+L+ F + L +L L N+L L+ SL+ + L+DN
Sbjct: 106 ALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLT------SLQYIWLHDNP 159
Query: 305 -DITGP 309
D T P
Sbjct: 160 WDCTCP 165
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 36.2 bits (82), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 79/315 (25%), Positives = 133/315 (42%), Gaps = 53/315 (16%)
Query: 311 PDLGGF-----SSLKELYLGEN---SLNGTINKSLNHLFKLETLSLDGNSFTGVISETFF 362
PD F SS++ L L SLN + ++L L+ L+L N + E F+
Sbjct: 255 PDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLK---DLKVLNLAYNKINKIADEAFY 311
Query: 363 SNMSNLQMLYLANNPLTMKLSHDWVPPFQLKWLSLASCKMGPNFPKWLRTQSQLILLDIS 422
+ NLQ+L L+ N L S ++ ++ ++ L + + + +L LD+
Sbjct: 312 G-LDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLR 370
Query: 423 NTGISG-----TVPDWFW--DLSVELFFLNLSNNHI---KGKLPDLSFLRSDDIVVDISS 472
+ ++ ++PD F + V L +NL+ N I + +L +L L
Sbjct: 371 DNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDIL----------- 419
Query: 473 NHFTGQIPPLPSNSTFLNLSKNKFSGSITFLCSIIENTWNIFDLSSNLL--SGELPDCWL 530
+F ++P L L L++N+FS + L N+L + E CW
Sbjct: 420 -YFLLRVPHL----QILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWD 474
Query: 531 NFNSLF---ILNLANNSFSGKIPDSMGFLHNIRTLSLNNNRLT----RELPSSLKNCSQL 583
F L +L L +N + P L +R LSLN+NRLT +LP++L+
Sbjct: 475 VFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLE----- 529
Query: 584 RVLDLRNNALFGEIP 598
+LD+ N L P
Sbjct: 530 -ILDISRNQLLAPNP 543
Score = 36.2 bits (82), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 41/89 (46%)
Query: 701 STLGFVKCLDLSSNKLCGPILEEIMDLDGLIALNLSRNNLTGPISPKIGQLKSLDFLDLS 760
TL +K L+L+ NK+ E LD L LNLS N L S L + ++DL
Sbjct: 287 ETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQ 346
Query: 761 RNHFSGSIPSSLVKLCGLGVLDLSYNNLS 789
+NH + + L L LDL N L+
Sbjct: 347 KNHIAIIQDQTFKFLEKLQTLDLRDNALT 375
Score = 33.9 bits (76), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 79/331 (23%), Positives = 134/331 (40%), Gaps = 48/331 (14%)
Query: 513 IFDLSSNLLSGELPDCWLNFNSLFILNLANNSFSGKIPDSMGFLHNIRTLSLNNNRLTRE 572
+ +L+ N ++ + + ++L +LNL+ N + L + + L N +
Sbjct: 294 VLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAII 353
Query: 573 LPSSLKNCSQLRVLDLRNNAL-----FGEIP-IWIGGN-LQNLIVLSLKSNNFH------ 619
+ K +L+ LDLR+NAL IP I++ GN L L ++L +N H
Sbjct: 354 QDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRL 413
Query: 620 --GNIPFQLCYLAFIQVLDLSLNNISGKIPKCFSNFSTMIQERSSDPIIGMANRIWVLPG 677
+I + L + +Q+L L+ N S C + Q S +P +
Sbjct: 414 ENLDILYFLLRVPHLQILILNQNRFSS----CSGD-----QTPSENPSLE---------- 454
Query: 678 YVYQYRYLDNIL-LTWKGSEH-EYKSTLGFVKCLDLSSNKLCGPILEEIMDLDGLIALNL 735
Q +N+L L W+ + L ++ L L+ N L L L L+L
Sbjct: 455 ---QLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSL 511
Query: 736 SRNNLTGPISPKIGQLKSLDFLDLSRNHFSGSIPSSLVKLCGLGVLDLSYNNLSGKIPLG 795
+ N LT + +L+ LD+SRN P V L VLD+++N + L
Sbjct: 512 NSNRLT--VLSHNDLPANLEILDISRNQLLAPNPDVFV---SLSVLDITHNKFICECELS 566
Query: 796 TQLQSFNASVYAGNLELCGPPLPNQCPNEES 826
T + N + N+ + GPP C +S
Sbjct: 567 TFINWLNHT----NVTIAGPPADIYCVYPDS 593
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 36.2 bits (82), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Query: 186 FNLSTSIETLDLFDNNLPSSSVYPWFLNLSRNILHLNLASNSLQGPIPEAFQHMVSLRFL 245
FN +S+E L + N+ + + F L RN+ L+L+ L+ P AF + SL+ L
Sbjct: 441 FNGLSSLEVLKMAGNSFQENFLPDIFTEL-RNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 499
Query: 246 ALSSNELEGGIPKFFGNMCSLNELYLLNN 274
++SN+L+ F + SL +++L N
Sbjct: 500 NMASNQLKSVPDGIFDRLTSLQKIWLHTN 528
Score = 33.5 bits (75), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 3/98 (3%)
Query: 284 IQNLSSGC--TVNSLEGLCLYDNDITG-PIPDLGGFSSLKELYLGENSLNGTINKSLNHL 340
IQ + G +++ L L L N I + G SSL++L E +L N + HL
Sbjct: 64 IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHL 123
Query: 341 FKLETLSLDGNSFTGVISETFFSNMSNLQMLYLANNPL 378
L+ L++ N +FSN++NL+ L L++N +
Sbjct: 124 KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
Score = 32.7 bits (73), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 51/110 (46%), Gaps = 26/110 (23%)
Query: 192 IETLDLFDNNLPSSSVYPWFLNLSRNILHLN------------------------LASNS 227
+E LD +NL S + FL+L RN+++L+ +A NS
Sbjct: 398 LEHLDFQHSNLKQMSEFSVFLSL-RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS 456
Query: 228 LQGP-IPEAFQHMVSLRFLALSSNELEGGIPKFFGNMCSLNELYLLNNKL 276
Q +P+ F + +L FL LS +LE P F ++ SL L + +N+L
Sbjct: 457 FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQL 506
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 50/95 (52%), Gaps = 6/95 (6%)
Query: 161 NLHYLKSLVLRSCALPPINPSFIWHFNLSTSIETLDLFDNNLPSSSVYPWFLNLSRNILH 220
+L +L +L+L PI + F+ +S++ L + NL S +P + + +
Sbjct: 74 SLSHLSTLILTG---NPIQSLALGAFSGLSSLQKLVAVETNLASLENFP--IGHLKTLKE 128
Query: 221 LNLASNSLQG-PIPEAFQHMVSLRFLALSSNELEG 254
LN+A N +Q +PE F ++ +L L LSSN+++
Sbjct: 129 LNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 78/299 (26%), Positives = 121/299 (40%), Gaps = 44/299 (14%)
Query: 296 LEGLCLYDNDITGPIPDLGGFSSLKELYLGENSLNGTINKSLNHLFKLETLSLDGNSFTG 355
L+ L L + G + G + LK+L L N + S + L L + GN
Sbjct: 277 LQELDLTATHLKGLPSGMKGLNLLKKLVLSVNHFDQLCQISAANFPSLTHLYIRGNVKKL 336
Query: 356 VISETFFSNMSNLQMLYLANNPLTMKLSHDWVPPFQLKWLS-LASCKMGPNFPKWLRTQS 414
+ + NLQ L L++N + QLK LS L + + N P L++Q+
Sbjct: 337 HLGVGCLEKLGNLQTLDLSHNDIEAS----DCCSLQLKNLSHLQTLNLSHNEPLGLQSQA 392
Query: 415 -----QLILLDISNTGISGTVPD-------WFWDLSVELFFLNLSNNHIKGKLPDLSFLR 462
QL LLD++ T + P + L++ FL+ SN H+ LP L L
Sbjct: 393 FKECPQLELLDLAFTRLHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLPVLRHL- 451
Query: 463 SDDIVVDISSNHFT-GQIPPLPSNSTFLNLSKNKFSGSITFL--CSIIENTWNIF----- 514
++ NHF G I T NL + S + L C ++ F
Sbjct: 452 ------NLKGNHFQDGTI-------TKTNLLQTVGSLEVLILSSCGLLSIDQQAFHSLGK 498
Query: 515 ----DLSSNLLSGELPDCWLNFNSLFILNLANNSFSGKIPDSMGFLHNIRTLSLNNNRL 569
DLS N L+ + D + ++ LNLA NS + P + L T++L++N L
Sbjct: 499 MSHVDLSHNSLTCDSIDSLSHLKGIY-LNLAANSINIISPRLLPILSQQSTINLSHNPL 556
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 44/87 (50%), Gaps = 6/87 (6%)
Query: 293 VNSLEGLCLYDNDITGPIPDLGGFSSLKELYLGENSLNGTINKSLNHLFKLETLSLDGNS 352
+N+L GL L DN IT P L + + EL L N L ++ L ++TL L
Sbjct: 68 LNNLIGLELKDNQITDLTP-LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQ 124
Query: 353 FTGVISETFFSNMSNLQMLYLANNPLT 379
T V T + +SNLQ+LYL N +T
Sbjct: 125 ITDV---TPLAGLSNLQVLYLDLNQIT 148
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 74/173 (42%), Gaps = 23/173 (13%)
Query: 468 VDISSNHFTGQIPPLPSNSTFLNLSKN-KFSGSITFL-------------CSI----IEN 509
V+ T P LP ++T L+LS+N ++ S+ L C + ++
Sbjct: 15 VNCDKRQLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDG 74
Query: 510 TWNI---FDLSSNLLSGELPDCWLNFNSLFILNLANNSFSGKIPDSMGFLHNIRTLSLNN 566
T + DLS N L LP +L +L+++ N + ++ L ++ L L
Sbjct: 75 TLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 567 NRLTRELPSSLKNCSQLRVLDLRNNALFGEIPIWIGGNLQNLIVLSLKSNNFH 619
N L P L +L L L NN L E+P + L+NL L L+ N+ +
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNQL-TELPAGLLNGLENLDTLLLQENSLY 185
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 82/196 (41%), Gaps = 25/196 (12%)
Query: 185 HFNLSTSIETLDLFDNNLPSSSVYPWFLNLSRNILHLNLASNSLQGPIPEAFQHMVSLRF 244
H ++ L +LP + L+LS N+L+ + SL +P ++L
Sbjct: 12 HLEVNCDKRQLTALPPDLPKDTT---ILHLSENLLY----TFSLATLMPYTRLTQLNLDR 64
Query: 245 LALSSNELEGGIPKFFGNMCSLNELYLLNNKLSGQLSEFIQNLSS-GCTVNSLEGLCLYD 303
L+ +++G +P L L L +N+L Q+L G T+ +L L +
Sbjct: 65 CELTKLQVDGTLP-------VLGTLDLSHNQL--------QSLPLLGQTLPALTVLDVSF 109
Query: 304 NDITG-PIPDLGGFSSLKELYLGENSLNGTINKSLNHLFKLETLSLDGNSFTGVISETFF 362
N +T P+ L G L+ELYL N L L KLE LSL N T +
Sbjct: 110 NRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTE-LPAGLL 168
Query: 363 SNMSNLQMLYLANNPL 378
+ + NL L L N L
Sbjct: 169 NGLENLDTLLLQENSL 184
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 35.8 bits (81), Expect = 0.11, Method: Composition-based stats.
Identities = 44/146 (30%), Positives = 62/146 (42%), Gaps = 17/146 (11%)
Query: 162 LHYLKSLVLRSCALPPINPSFIWHFNLSTSIETLDLFDNNL---PSSSVYPWFLNLSRNI 218
L L +L L C L + P F +++ L L DN L P + F +L N+
Sbjct: 103 LGRLHTLHLDRCGLQELGPGL---FRGLAALQYLYLQDNALQALPDDT----FRDLG-NL 154
Query: 219 LHLNLASNSLQGPIPEAFQHMVSLRFLALSSNELEGGIPKFFGNMCSLNELYLLNNKLSG 278
HL L N + AF+ + SL L L N + P F ++ L LYL N LS
Sbjct: 155 THLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA 214
Query: 279 QLSEFIQNLSSGCTVNSLEGLCLYDN 304
+E + L +L+ L L DN
Sbjct: 215 LPTEALAPL------RALQYLRLNDN 234
Score = 30.4 bits (67), Expect = 4.7, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 315 GFSSLKELYLGENSLNGTINKSLNHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLYLA 374
G ++L+ LYL +N+L + + L L L L GN + V E F + +L L L
Sbjct: 126 GLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSV-PERAFRGLHSLDRLLLH 184
Query: 375 NN 376
N
Sbjct: 185 QN 186
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 35.8 bits (81), Expect = 0.12, Method: Composition-based stats.
Identities = 44/146 (30%), Positives = 62/146 (42%), Gaps = 17/146 (11%)
Query: 162 LHYLKSLVLRSCALPPINPSFIWHFNLSTSIETLDLFDNNL---PSSSVYPWFLNLSRNI 218
L L +L L C L + P F +++ L L DN L P + F +L N+
Sbjct: 104 LGRLHTLHLDRCGLQELGPGL---FRGLAALQYLYLQDNALQALPDDT----FRDLG-NL 155
Query: 219 LHLNLASNSLQGPIPEAFQHMVSLRFLALSSNELEGGIPKFFGNMCSLNELYLLNNKLSG 278
HL L N + AF+ + SL L L N + P F ++ L LYL N LS
Sbjct: 156 THLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA 215
Query: 279 QLSEFIQNLSSGCTVNSLEGLCLYDN 304
+E + L +L+ L L DN
Sbjct: 216 LPTEALAPL------RALQYLRLNDN 235
Score = 30.4 bits (67), Expect = 4.6, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 315 GFSSLKELYLGENSLNGTINKSLNHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLYLA 374
G ++L+ LYL +N+L + + L L L L GN + V E F + +L L L
Sbjct: 127 GLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSV-PERAFRGLHSLDRLLLH 185
Query: 375 NN 376
N
Sbjct: 186 QN 187
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 74/173 (42%), Gaps = 23/173 (13%)
Query: 468 VDISSNHFTGQIPPLPSNSTFLNLSKN-KFSGSITFL-------------CSI----IEN 509
V+ T P LP ++T L+LS+N ++ S+ L C + ++
Sbjct: 15 VNCDKRQLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDG 74
Query: 510 TWNI---FDLSSNLLSGELPDCWLNFNSLFILNLANNSFSGKIPDSMGFLHNIRTLSLNN 566
T + DLS N L LP +L +L+++ N + ++ L ++ L L
Sbjct: 75 TLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 567 NRLTRELPSSLKNCSQLRVLDLRNNALFGEIPIWIGGNLQNLIVLSLKSNNFH 619
N L P L +L L L NN L E+P + L+NL L L+ N+ +
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNQL-TELPAGLLNGLENLDTLLLQENSLY 185
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 82/196 (41%), Gaps = 25/196 (12%)
Query: 185 HFNLSTSIETLDLFDNNLPSSSVYPWFLNLSRNILHLNLASNSLQGPIPEAFQHMVSLRF 244
H ++ L +LP + L+LS N+L+ + SL +P ++L
Sbjct: 12 HLEVNCDKRQLTALPPDLPKDTT---ILHLSENLLY----TFSLATLMPYTRLTQLNLDR 64
Query: 245 LALSSNELEGGIPKFFGNMCSLNELYLLNNKLSGQLSEFIQNLSS-GCTVNSLEGLCLYD 303
L+ +++G +P L L L +N+L Q+L G T+ +L L +
Sbjct: 65 CELTKLQVDGTLP-------VLGTLDLSHNQL--------QSLPLLGQTLPALTVLDVSF 109
Query: 304 NDITG-PIPDLGGFSSLKELYLGENSLNGTINKSLNHLFKLETLSLDGNSFTGVISETFF 362
N +T P+ L G L+ELYL N L L KLE LSL N T +
Sbjct: 110 NRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTE-LPAGLL 168
Query: 363 SNMSNLQMLYLANNPL 378
+ + NL L L N L
Sbjct: 169 NGLENLDTLLLQENSL 184
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 76/178 (42%), Gaps = 23/178 (12%)
Query: 463 SDDIVVDISSNHFTGQIPPLPSNSTFLNLSKN-KFSGSITFL-------------CSI-- 506
+ + V+ T P LP ++T L+LS+N ++ S+ L C +
Sbjct: 10 ASHLEVNCDKRQLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTK 69
Query: 507 --IENTWNI---FDLSSNLLSGELPDCWLNFNSLFILNLANNSFSGKIPDSMGFLHNIRT 561
++ T + DLS N L LP +L +L+++ N + ++ L ++
Sbjct: 70 LQVDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQE 128
Query: 562 LSLNNNRLTRELPSSLKNCSQLRVLDLRNNALFGEIPIWIGGNLQNLIVLSLKSNNFH 619
L L N L P L +L L L NN L E+P + L+NL L L+ N+ +
Sbjct: 129 LYLKGNELKTLPPGLLTPTPKLEKLSLANNQL-TELPAGLLNGLENLDTLLLQENSLY 185
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 82/196 (41%), Gaps = 25/196 (12%)
Query: 185 HFNLSTSIETLDLFDNNLPSSSVYPWFLNLSRNILHLNLASNSLQGPIPEAFQHMVSLRF 244
H ++ L +LP + L+LS N+L+ + SL +P ++L
Sbjct: 12 HLEVNCDKRQLTALPPDLPKDTT---ILHLSENLLY----TFSLATLMPYTRLTQLNLDR 64
Query: 245 LALSSNELEGGIPKFFGNMCSLNELYLLNNKLSGQLSEFIQNLSS-GCTVNSLEGLCLYD 303
L+ +++G +P L L L +N+L Q+L G T+ +L L +
Sbjct: 65 CELTKLQVDGTLP-------VLGTLDLSHNQL--------QSLPLLGQTLPALTVLDVSF 109
Query: 304 NDITG-PIPDLGGFSSLKELYLGENSLNGTINKSLNHLFKLETLSLDGNSFTGVISETFF 362
N +T P+ L G L+ELYL N L L KLE LSL N T +
Sbjct: 110 NRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTE-LPAGLL 168
Query: 363 SNMSNLQMLYLANNPL 378
+ + NL L L N L
Sbjct: 169 NGLENLDTLLLQENSL 184
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 76/178 (42%), Gaps = 23/178 (12%)
Query: 463 SDDIVVDISSNHFTGQIPPLPSNSTFLNLSKN-KFSGSITFL-------------CSI-- 506
+ + V+ T P LP ++T L+LS+N ++ S+ L C +
Sbjct: 10 ASHLEVNCDKRQLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTK 69
Query: 507 --IENTWNI---FDLSSNLLSGELPDCWLNFNSLFILNLANNSFSGKIPDSMGFLHNIRT 561
++ T + DLS N L LP +L +L+++ N + ++ L ++
Sbjct: 70 LQVDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQE 128
Query: 562 LSLNNNRLTRELPSSLKNCSQLRVLDLRNNALFGEIPIWIGGNLQNLIVLSLKSNNFH 619
L L N L P L +L L L NN L E+P + L+NL L L+ N+ +
Sbjct: 129 LYLKGNELKTLPPGLLTPTPKLEKLSLANNQL-TELPAGLLNGLENLDTLLLQENSLY 185
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 82/196 (41%), Gaps = 25/196 (12%)
Query: 185 HFNLSTSIETLDLFDNNLPSSSVYPWFLNLSRNILHLNLASNSLQGPIPEAFQHMVSLRF 244
H ++ L +LP + L+LS N+L+ + SL +P ++L
Sbjct: 12 HLEVNCDKRQLTALPPDLPKDTT---ILHLSENLLY----TFSLATLMPYTRLTQLNLDR 64
Query: 245 LALSSNELEGGIPKFFGNMCSLNELYLLNNKLSGQLSEFIQNLSS-GCTVNSLEGLCLYD 303
L+ +++G +P L L L +N+L Q+L G T+ +L L +
Sbjct: 65 CELTKLQVDGTLP-------VLGTLDLSHNQL--------QSLPLLGQTLPALTVLDVSF 109
Query: 304 NDITG-PIPDLGGFSSLKELYLGENSLNGTINKSLNHLFKLETLSLDGNSFTGVISETFF 362
N +T P+ L G L+ELYL N L L KLE LSL N T +
Sbjct: 110 NRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTE-LPAGLL 168
Query: 363 SNMSNLQMLYLANNPL 378
+ + NL L L N L
Sbjct: 169 NGLENLDTLLLQENSL 184
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 44/87 (50%), Gaps = 6/87 (6%)
Query: 293 VNSLEGLCLYDNDITGPIPDLGGFSSLKELYLGENSLNGTINKSLNHLFKLETLSLDGNS 352
+N+L GL L DN IT P L + + EL L N L ++ L ++TL L
Sbjct: 62 LNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQ 118
Query: 353 FTGVISETFFSNMSNLQMLYLANNPLT 379
T V T + +SNLQ+LYL N +T
Sbjct: 119 ITDV---TPLAGLSNLQVLYLDLNQIT 142
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 74/173 (42%), Gaps = 23/173 (13%)
Query: 468 VDISSNHFTGQIPPLPSNSTFLNLSKN-KFSGSITFL-------------CSI----IEN 509
V+ T P LP ++T L+LS+N ++ S+ L C + ++
Sbjct: 15 VNCDKRDLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDG 74
Query: 510 TWNI---FDLSSNLLSGELPDCWLNFNSLFILNLANNSFSGKIPDSMGFLHNIRTLSLNN 566
T + DLS N L LP +L +L+++ N + ++ L ++ L L
Sbjct: 75 TLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 567 NRLTRELPSSLKNCSQLRVLDLRNNALFGEIPIWIGGNLQNLIVLSLKSNNFH 619
N L P L +L L L NN L E+P + L+NL L L+ N+ +
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNDL-TELPAGLLNGLENLDTLLLQENSLY 185
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 82/196 (41%), Gaps = 25/196 (12%)
Query: 185 HFNLSTSIETLDLFDNNLPSSSVYPWFLNLSRNILHLNLASNSLQGPIPEAFQHMVSLRF 244
H ++ L +LP + L+LS N+L+ + SL +P ++L
Sbjct: 12 HLEVNCDKRDLTALPPDLPKDTT---ILHLSENLLY----TFSLATLMPYTRLTQLNLDR 64
Query: 245 LALSSNELEGGIPKFFGNMCSLNELYLLNNKLSGQLSEFIQNLSS-GCTVNSLEGLCLYD 303
L+ +++G +P L L L +N+L Q+L G T+ +L L +
Sbjct: 65 CELTKLQVDGTLP-------VLGTLDLSHNQL--------QSLPLLGQTLPALTVLDVSF 109
Query: 304 NDITG-PIPDLGGFSSLKELYLGENSLNGTINKSLNHLFKLETLSLDGNSFTGVISETFF 362
N +T P+ L G L+ELYL N L L KLE LSL N T +
Sbjct: 110 NRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDLTE-LPAGLL 168
Query: 363 SNMSNLQMLYLANNPL 378
+ + NL L L N L
Sbjct: 169 NGLENLDTLLLQENSL 184
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 34.7 bits (78), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 3/98 (3%)
Query: 284 IQNLSSGC--TVNSLEGLCLYDNDITG-PIPDLGGFSSLKELYLGENSLNGTINKSLNHL 340
IQ + G +++ L L L N I + G SSL++L E +L N + HL
Sbjct: 64 IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHL 123
Query: 341 FKLETLSLDGNSFTGVISETFFSNMSNLQMLYLANNPL 378
L+ L++ N +FSN++NL+ L L++N +
Sbjct: 124 KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
Score = 30.0 bits (66), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 50/95 (52%), Gaps = 6/95 (6%)
Query: 161 NLHYLKSLVLRSCALPPINPSFIWHFNLSTSIETLDLFDNNLPSSSVYPWFLNLSRNILH 220
+L +L +L+L PI + F+ +S++ L + NL S +P + + +
Sbjct: 74 SLSHLSTLILTG---NPIQSLALGAFSGLSSLQKLVAVETNLASLENFP--IGHLKTLKE 128
Query: 221 LNLASNSLQG-PIPEAFQHMVSLRFLALSSNELEG 254
LN+A N +Q +PE F ++ +L L LSSN+++
Sbjct: 129 LNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 34.7 bits (78), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 8/73 (10%)
Query: 310 IPDLGGF---SSLKELYLGENSLNGTINKSLNHLFKLETLSLDGNSFTGVISETFFSNMS 366
I D+ G L+ LYLG N + L+ L KL+TLSL+ N + ++ + ++
Sbjct: 121 ISDINGLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVP---LAGLT 175
Query: 367 NLQMLYLANNPLT 379
LQ LYL+ N ++
Sbjct: 176 KLQNLYLSKNHIS 188
>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2
pdb|2V70|B Chain B, Third Lrr Domain Of Human Slit2
pdb|2V70|C Chain C, Third Lrr Domain Of Human Slit2
pdb|2V70|D Chain D, Third Lrr Domain Of Human Slit2
Length = 220
Score = 34.7 bits (78), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 48/102 (47%), Gaps = 8/102 (7%)
Query: 221 LNLASNSLQGPIPEAFQHMVSLRFLALSSNELEGGIPKFFGNMCSLNELYLLNNKLSGQL 280
+N ++N + AF+ + + L+SN LE K F + SL L L +N+++
Sbjct: 62 INFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVG 121
Query: 281 SEFIQNLSSGCTVNSLEGLCLYDNDITGPIPDLGGFSSLKEL 322
++ LS S+ L LYDN IT P G F +L L
Sbjct: 122 NDSFIGLS------SVRLLSLYDNQITTVAP--GAFDTLHSL 155
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 53/119 (44%), Gaps = 7/119 (5%)
Query: 236 FQHMVSLRFLALSSNELEGGIPKFFGNMCSLNELYLLNNKLSGQLSEFIQNLSSGCTVNS 295
F+ + LR + S+N++ F +NE+ L +N+L + + L S
Sbjct: 53 FKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLE------S 106
Query: 296 LEGLCLYDNDITGPIPD-LGGFSSLKELYLGENSLNGTINKSLNHLFKLETLSLDGNSF 353
L+ L L N IT D G SS++ L L +N + + + L L TL+L N F
Sbjct: 107 LKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF 165
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 3/98 (3%)
Query: 284 IQNLSSGC--TVNSLEGLCLYDNDITG-PIPDLGGFSSLKELYLGENSLNGTINKSLNHL 340
IQ + G +++ L L L N I + G SSL++L E +L N + HL
Sbjct: 66 IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHL 125
Query: 341 FKLETLSLDGNSFTGVISETFFSNMSNLQMLYLANNPL 378
L+ L++ N +FSN++NL+ L L++N +
Sbjct: 126 KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 163
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 50/95 (52%), Gaps = 6/95 (6%)
Query: 161 NLHYLKSLVLRSCALPPINPSFIWHFNLSTSIETLDLFDNNLPSSSVYPWFLNLSRNILH 220
+L +L +L+L PI + F+ +S++ L + NL S +P + + +
Sbjct: 76 SLSHLSTLILTG---NPIQSLALGAFSGLSSLQKLVAVETNLASLENFP--IGHLKTLKE 130
Query: 221 LNLASNSLQG-PIPEAFQHMVSLRFLALSSNELEG 254
LN+A N +Q +PE F ++ +L L LSSN+++
Sbjct: 131 LNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 165
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 3/98 (3%)
Query: 284 IQNLSSGC--TVNSLEGLCLYDNDITG-PIPDLGGFSSLKELYLGENSLNGTINKSLNHL 340
IQ + G +++ L L L N I + G SSL++L E +L N + HL
Sbjct: 65 IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHL 124
Query: 341 FKLETLSLDGNSFTGVISETFFSNMSNLQMLYLANNPL 378
L+ L++ N +FSN++NL+ L L++N +
Sbjct: 125 KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 162
Score = 30.4 bits (67), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 50/95 (52%), Gaps = 6/95 (6%)
Query: 161 NLHYLKSLVLRSCALPPINPSFIWHFNLSTSIETLDLFDNNLPSSSVYPWFLNLSRNILH 220
+L +L +L+L PI + F+ +S++ L + NL S +P + + +
Sbjct: 75 SLSHLSTLILTG---NPIQSLALGAFSGLSSLQKLVAVETNLASLENFP--IGHLKTLKE 129
Query: 221 LNLASNSLQG-PIPEAFQHMVSLRFLALSSNELEG 254
LN+A N +Q +PE F ++ +L L LSSN+++
Sbjct: 130 LNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 164
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 94/362 (25%), Positives = 144/362 (39%), Gaps = 62/362 (17%)
Query: 478 QIPPLPSNSTFLNLSKNKFSGSITFLCSIIENTWN-IFDLSSNLLSGELP------DCWL 530
Q+P LP++ +++LS N + + E +++ + DL + + P + +
Sbjct: 24 QVPELPAHVNYVDLSLNS-------IAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFR 76
Query: 531 NFNSLFILNLANNSFSGKIPDSMGFLHNIRTLSLNNNRLTRELPSS--LKNCSQLRVLDL 588
+SL IL L N F + L N+ L+L L + S K + L +L L
Sbjct: 77 GLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVL 136
Query: 589 RNNALFGEIPIWIGGNLQNLIVLSLKSN-----------NFHGNIPFQLCYLAFIQVLDL 637
R+N + P N++ VL L N NF G F L L+ I + D
Sbjct: 137 RDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGK-HFTLLRLSSITLQD- 194
Query: 638 SLNNISGKIPKC---FSN------------FSTMIQERSSDPIIGMANRIWVLP-----G 677
+N KC F N F + +R D I G + +L G
Sbjct: 195 -MNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMG 253
Query: 678 YVYQY-RYLDNILLTWKGSEHEYKSTLGFVKCLDLSSNKLCGPILEEIMDLDGLIALNLS 736
+ + + D T+KG E VK DLS +K+ + L L L+
Sbjct: 254 SSFGHTNFKDPDNFTFKGLEASG------VKTCDLSKSKIFALLKSVFSHFTDLEQLTLA 307
Query: 737 RNNLTGPISPKIGQLKSLDFLDLSRNHFSGSIPSSLVK-LCGLGVLDLSYNNLSGKIPLG 795
+N + L L L+LS+N F GSI S + + L L VLDLSYN++ LG
Sbjct: 308 QNEINKIDDNAFWGLTHLLKLNLSQN-FLGSIDSRMFENLDKLEVLDLSYNHIRA---LG 363
Query: 796 TQ 797
Q
Sbjct: 364 DQ 365
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 49/98 (50%), Gaps = 4/98 (4%)
Query: 188 LSTSIETLDLFDNNLPSSSVYPWFLNLSRNILHLNLASNSLQGPIPEAFQHMVSLRFLAL 247
+ T+ + L L+DN + + + P + + L+L +N L F + L L+L
Sbjct: 28 IPTTTQVLYLYDNRI--TKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSL 85
Query: 248 SSNELEGGIPK-FFGNMCSLNELYLLNNKLSGQLSEFI 284
+ N+L+ IP+ F N+ SL ++LLNN S+ +
Sbjct: 86 NDNQLKS-IPRGAFDNLRSLTHIWLLNNPWDCACSDIL 122
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Query: 295 SLEGLCLYDNDITGPIPDL-GGFSSLKELYLGENSLNGTINKSLNHLFKLETLSLDGNSF 353
+ + L LYDN IT P + + L L L N L + L +L LSL+ N
Sbjct: 31 TTQVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL 90
Query: 354 TGVISETFFSNMSNLQMLYLANNP 377
I F N+ +L ++L NNP
Sbjct: 91 KS-IPRGAFDNLRSLTHIWLLNNP 113
Score = 30.0 bits (66), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Query: 554 GFLHNIRTLSLNNNRLTRELPSSLKNCSQLRVLDLRNNALFGEIPIWIGGNLQNLIVLSL 613
G + L L +NR+T+ P +QL LDL NN L +P + L L LSL
Sbjct: 27 GIPTTTQVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQL-TVLPAGVFDKLTQLTQLSL 85
Query: 614 KSNNF 618
N
Sbjct: 86 NDNQL 90
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 34.3 bits (77), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 49/98 (50%), Gaps = 4/98 (4%)
Query: 188 LSTSIETLDLFDNNLPSSSVYPWFLNLSRNILHLNLASNSLQGPIPEAFQHMVSLRFLAL 247
+ T+ + L L+DN + + + P + + L+L +N L F + L L+L
Sbjct: 36 IPTTTQVLYLYDNQI--TKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSL 93
Query: 248 SSNELEGGIPK-FFGNMCSLNELYLLNNKLSGQLSEFI 284
+ N+L+ IP+ F N+ SL ++LLNN S+ +
Sbjct: 94 NDNQLKS-IPRGAFDNLKSLTHIWLLNNPWDCACSDIL 130
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
Query: 301 LYDNDITGPIPDL-GGFSSLKELYLGENSLNGTINKSLNHLFKLETLSLDGNSFTGVISE 359
LYDN IT P + + L L L N L + L +L LSL+ N I
Sbjct: 45 LYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS-IPR 103
Query: 360 TFFSNMSNLQMLYLANNP 377
F N+ +L ++L NNP
Sbjct: 104 GAFDNLKSLTHIWLLNNP 121
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 34.3 bits (77), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 3/98 (3%)
Query: 284 IQNLSSGC--TVNSLEGLCLYDNDITG-PIPDLGGFSSLKELYLGENSLNGTINKSLNHL 340
IQ + G +++ L L L N I + G SSL++L E +L N + HL
Sbjct: 65 IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHL 124
Query: 341 FKLETLSLDGNSFTGVISETFFSNMSNLQMLYLANNPL 378
L+ L++ N +FSN++NL+ L L++N +
Sbjct: 125 KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 162
Score = 30.4 bits (67), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 50/95 (52%), Gaps = 6/95 (6%)
Query: 161 NLHYLKSLVLRSCALPPINPSFIWHFNLSTSIETLDLFDNNLPSSSVYPWFLNLSRNILH 220
+L +L +L+L PI + F+ +S++ L + NL S +P + + +
Sbjct: 75 SLSHLSTLILTG---NPIQSLALGAFSGLSSLQKLVAVETNLASLENFP--IGHLKTLKE 129
Query: 221 LNLASNSLQG-PIPEAFQHMVSLRFLALSSNELEG 254
LN+A N +Q +PE F ++ +L L LSSN+++
Sbjct: 130 LNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 164
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 34.3 bits (77), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 49/98 (50%), Gaps = 4/98 (4%)
Query: 188 LSTSIETLDLFDNNLPSSSVYPWFLNLSRNILHLNLASNSLQGPIPEAFQHMVSLRFLAL 247
+ T+ + L L+DN + + + P + + L+L +N L F + L L+L
Sbjct: 28 IPTTTQVLYLYDNQI--TKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSL 85
Query: 248 SSNELEGGIPK-FFGNMCSLNELYLLNNKLSGQLSEFI 284
+ N+L+ IP+ F N+ SL ++LLNN S+ +
Sbjct: 86 NDNQLKS-IPRGAFDNLKSLTHIWLLNNPWDCACSDIL 122
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
Query: 301 LYDNDITGPIPDL-GGFSSLKELYLGENSLNGTINKSLNHLFKLETLSLDGNSFTGVISE 359
LYDN IT P + + L L L N L + L +L LSL+ N I
Sbjct: 37 LYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS-IPR 95
Query: 360 TFFSNMSNLQMLYLANNP 377
F N+ +L ++L NNP
Sbjct: 96 GAFDNLKSLTHIWLLNNP 113
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 34.3 bits (77), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 8/73 (10%)
Query: 310 IPDLGGF---SSLKELYLGENSLNGTINKSLNHLFKLETLSLDGNSFTGVISETFFSNMS 366
I D+ G L+ LYLG N + L+ L KL+TLSL+ N + ++ + ++
Sbjct: 122 ISDINGLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVP---LAGLT 176
Query: 367 NLQMLYLANNPLT 379
LQ LYL+ N ++
Sbjct: 177 KLQNLYLSKNHIS 189
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 34.3 bits (77), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 8/73 (10%)
Query: 310 IPDLGGF---SSLKELYLGENSLNGTINKSLNHLFKLETLSLDGNSFTGVISETFFSNMS 366
I D+ G L+ LYLG N + L+ L KL+TLSL+ N + ++ + ++
Sbjct: 144 ISDINGLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVP---LAGLT 198
Query: 367 NLQMLYLANNPLT 379
LQ LYL+ N ++
Sbjct: 199 KLQNLYLSKNHIS 211
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 34.3 bits (77), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 8/73 (10%)
Query: 310 IPDLGGF---SSLKELYLGENSLNGTINKSLNHLFKLETLSLDGNSFTGVISETFFSNMS 366
I D+ G L+ LYLG N + L+ L KL+TLSL+ N + ++ + ++
Sbjct: 124 ISDINGLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVP---LAGLT 178
Query: 367 NLQMLYLANNPLT 379
LQ LYL+ N ++
Sbjct: 179 KLQNLYLSKNHIS 191
>pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain
Length = 213
Score = 33.9 bits (76), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 8/73 (10%)
Query: 310 IPDLGGF---SSLKELYLGENSLNGTINKSLNHLFKLETLSLDGNSFTGVISETFFSNMS 366
I D+ G L+ LYLG N + L+ L KL+TLSL+ N + ++ + ++
Sbjct: 119 ISDINGLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVP---LAGLT 173
Query: 367 NLQMLYLANNPLT 379
LQ LYL+ N ++
Sbjct: 174 KLQNLYLSKNHIS 186
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 33.9 bits (76), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 3/98 (3%)
Query: 284 IQNLSSGC--TVNSLEGLCLYDNDITG-PIPDLGGFSSLKELYLGENSLNGTINKSLNHL 340
IQ + G +++ L L L N I + G SSL++L E +L N + HL
Sbjct: 66 IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVALETNLASLENFPIGHL 125
Query: 341 FKLETLSLDGNSFTGVISETFFSNMSNLQMLYLANNPL 378
L+ L++ N +FSN++NL+ L L++N +
Sbjct: 126 KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 163
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 50/95 (52%), Gaps = 6/95 (6%)
Query: 161 NLHYLKSLVLRSCALPPINPSFIWHFNLSTSIETLDLFDNNLPSSSVYPWFLNLSRNILH 220
+L +L +L+L PI + F+ +S++ L + NL S +P + + +
Sbjct: 76 SLSHLSTLILTG---NPIQSLALGAFSGLSSLQKLVALETNLASLENFP--IGHLKTLKE 130
Query: 221 LNLASNSLQG-PIPEAFQHMVSLRFLALSSNELEG 254
LN+A N +Q +PE F ++ +L L LSSN+++
Sbjct: 131 LNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 165
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 33.9 bits (76), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 75/173 (43%), Gaps = 23/173 (13%)
Query: 468 VDISSNHFTGQIPPLPSNSTFLNLSKN-KFSGSITFL-------------CSI----IEN 509
V+ + T P LP ++T L+LS+N ++ S+ L C + ++
Sbjct: 16 VNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDG 75
Query: 510 TWNI---FDLSSNLLSGELPDCWLNFNSLFILNLANNSFSGKIPDSMGFLHNIRTLSLNN 566
T + DLS N L LP +L +L+++ N + ++ L ++ L L
Sbjct: 76 TLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 134
Query: 567 NRLTRELPSSLKNCSQLRVLDLRNNALFGEIPIWIGGNLQNLIVLSLKSNNFH 619
N L P L +L L L NN L E+P + L+NL L L+ N+ +
Sbjct: 135 NELKTLPPGLLTPTPKLEKLSLANNNL-TELPAGLLNGLENLDTLLLQENSLY 186
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 80/195 (41%), Gaps = 23/195 (11%)
Query: 185 HFNLSTSIETLDLFDNNLPSSSVYPWFLNLSRNILHLNLASNSLQGPIPEAFQHMVSLRF 244
H ++ L +LP + L+LS N+L+ + SL +P ++L
Sbjct: 13 HLEVNCDKRNLTALPPDLPKDTT---ILHLSENLLY----TFSLATLMPYTRLTQLNLDR 65
Query: 245 LALSSNELEGGIPKFFGNMCSLNELYLLNNKLSGQLSEFIQNLSSGCTVNSLEGLCLYDN 304
L+ +++G +P S N+L L L GQ T+ +L L + N
Sbjct: 66 CELTKLQVDGTLPVLGTLDLSHNQLQSL--PLLGQ------------TLPALTVLDVSFN 111
Query: 305 DITG-PIPDLGGFSSLKELYLGENSLNGTINKSLNHLFKLETLSLDGNSFTGVISETFFS 363
+T P+ L G L+ELYL N L L KLE LSL N+ T + +
Sbjct: 112 RLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE-LPAGLLN 170
Query: 364 NMSNLQMLYLANNPL 378
+ NL L L N L
Sbjct: 171 GLENLDTLLLQENSL 185
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 33.9 bits (76), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 8/73 (10%)
Query: 310 IPDLGGF---SSLKELYLGENSLNGTINKSLNHLFKLETLSLDGNSFTGVISETFFSNMS 366
I D+ G L+ LYLG N + L+ L KL+TLSL+ N + ++ + ++
Sbjct: 124 ISDINGLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVP---LAGLT 178
Query: 367 NLQMLYLANNPLT 379
LQ LYL+ N ++
Sbjct: 179 KLQNLYLSKNHIS 191
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 33.9 bits (76), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 74/173 (42%), Gaps = 23/173 (13%)
Query: 468 VDISSNHFTGQIPPLPSNSTFLNLSKN-KFSGSITFL-------------CSI----IEN 509
V+ T P LP ++T L+LS+N ++ S+ L C + ++
Sbjct: 15 VNCDKRDLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDG 74
Query: 510 TWNI---FDLSSNLLSGELPDCWLNFNSLFILNLANNSFSGKIPDSMGFLHNIRTLSLNN 566
T + DLS N L LP +L +L+++ N + ++ L ++ L L
Sbjct: 75 TLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 567 NRLTRELPSSLKNCSQLRVLDLRNNALFGEIPIWIGGNLQNLIVLSLKSNNFH 619
N L P L +L L L NN L E+P + L+NL L L+ N+ +
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNNL-TELPAGLLNGLENLDTLLLQENSLY 185
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 80/195 (41%), Gaps = 23/195 (11%)
Query: 185 HFNLSTSIETLDLFDNNLPSSSVYPWFLNLSRNILHLNLASNSLQGPIPEAFQHMVSLRF 244
H ++ L +LP + L+LS N+L+ + SL +P ++L
Sbjct: 12 HLEVNCDKRDLTALPPDLPKDTT---ILHLSENLLY----TFSLATLMPYTRLTQLNLDR 64
Query: 245 LALSSNELEGGIPKFFGNMCSLNELYLLNNKLSGQLSEFIQNLSSGCTVNSLEGLCLYDN 304
L+ +++G +P S N+L L L GQ T+ +L L + N
Sbjct: 65 CELTKLQVDGTLPVLGTLDLSHNQLQSL--PLLGQ------------TLPALTVLDVSFN 110
Query: 305 DITG-PIPDLGGFSSLKELYLGENSLNGTINKSLNHLFKLETLSLDGNSFTGVISETFFS 363
+T P+ L G L+ELYL N L L KLE LSL N+ T + +
Sbjct: 111 RLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE-LPAGLLN 169
Query: 364 NMSNLQMLYLANNPL 378
+ NL L L N L
Sbjct: 170 GLENLDTLLLQENSL 184
>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 33.9 bits (76), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 8/73 (10%)
Query: 310 IPDLGGF---SSLKELYLGENSLNGTINKSLNHLFKLETLSLDGNSFTGVISETFFSNMS 366
I D+ G L+ LYLG N + L+ L KL+TLSL+ N + ++ + ++
Sbjct: 142 ISDINGLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVP---LAGLT 196
Query: 367 NLQMLYLANNPLT 379
LQ LYL+ N ++
Sbjct: 197 KLQNLYLSKNHIS 209
>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 33.9 bits (76), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 8/73 (10%)
Query: 310 IPDLGGF---SSLKELYLGENSLNGTINKSLNHLFKLETLSLDGNSFTGVISETFFSNMS 366
I D+ G L+ LYLG N + L+ L KL+TLSL+ N + ++ + ++
Sbjct: 142 ISDINGLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVP---LAGLT 196
Query: 367 NLQMLYLANNPLT 379
LQ LYL+ N ++
Sbjct: 197 KLQNLYLSKNHIS 209
>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 33.9 bits (76), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 8/73 (10%)
Query: 310 IPDLGGF---SSLKELYLGENSLNGTINKSLNHLFKLETLSLDGNSFTGVISETFFSNMS 366
I D+ G L+ LYLG N + L+ L KL+TLSL+ N + ++ + ++
Sbjct: 142 ISDINGLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVP---LAGLT 196
Query: 367 NLQMLYLANNPLT 379
LQ LYL+ N ++
Sbjct: 197 KLQNLYLSKNHIS 209
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 33.5 bits (75), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 57/202 (28%), Positives = 87/202 (43%), Gaps = 14/202 (6%)
Query: 591 NALFGEIPIWIGGNLQNLIVLSLKSNNFHGNIPFQLCYLAFIQVLDLSLNNISGKIPKCF 650
N FG+ P L++L L+ SN G F L ++ LDLS N +S K
Sbjct: 337 NCKFGQFPTL---KLKSLKRLTFTSNK--GGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQ 391
Query: 651 SNFSTM---IQERSSDPIIGMANRIWVLPGYVYQYRYLDNILLTWKG-SEHEYKSTLGFV 706
S+F T+ + S + +I M++ L Q +LD K SE +L +
Sbjct: 392 SDFGTISLKYLDLSFNGVITMSSNFLGLE----QLEHLDFQHSNLKQMSEFSVFLSLRNL 447
Query: 707 KCLDLSSNKLCGPILEEIMDLDGLIALNLSRNNLTGPISPKI-GQLKSLDFLDLSRNHFS 765
LD+S L L L ++ N+ P I +L++L FLDLS+
Sbjct: 448 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 507
Query: 766 GSIPSSLVKLCGLGVLDLSYNN 787
P++ L L VL++S+NN
Sbjct: 508 QLSPTAFNSLSSLQVLNMSHNN 529
Score = 33.1 bits (74), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 3/98 (3%)
Query: 284 IQNLSSGC--TVNSLEGLCLYDNDITG-PIPDLGGFSSLKELYLGENSLNGTINKSLNHL 340
IQ + G +++ L L L N I + G SSL++L E +L N + HL
Sbjct: 88 IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHL 147
Query: 341 FKLETLSLDGNSFTGVISETFFSNMSNLQMLYLANNPL 378
L+ L++ N +FSN++NL+ L L++N +
Sbjct: 148 KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 185
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 83/191 (43%), Gaps = 13/191 (6%)
Query: 315 GFSSLKELYLGENSLNGTINKSLNHL--FKLETLSLDGNSFTGVISETFFSNMSNLQMLY 372
G SLK L L S NG I S N L +LE L ++ + + F ++ NL L
Sbjct: 395 GTISLKYLDL---SFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD 451
Query: 373 LANNPLTMKLSHDWVPPFQLKWLSLASCKMGPNF-PKWLRTQSQLILLDISNTGISGTVP 431
+++ + + + L+ L +A NF P L LD+S + P
Sbjct: 452 ISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP 511
Query: 432 DWFWDLSVELFFLNLSNNHIKGKLPDLSFLRSDDI-VVDISSNHF----TGQIPPLPSNS 486
F LS L LN+S+N+ L + + + V+D S NH ++ PS+
Sbjct: 512 TAFNSLS-SLQVLNMSHNNF-FSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSL 569
Query: 487 TFLNLSKNKFS 497
FLNL++N F+
Sbjct: 570 AFLNLTQNDFA 580
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 53/111 (47%), Gaps = 26/111 (23%)
Query: 533 NSLFILNLANNSFSGK-IPDSMGFLHNIRTLSLNNNRLTRELPSSLKNCSQLRVLDLRNN 591
+SL +L +A NSF +PD L N+ L L+ +L + P++ + S L+VL++ +N
Sbjct: 469 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 528
Query: 592 ALFGEIPIWIGGNLQNLIVLSLKSNNFHGNIPFQLCYLAFIQVLDLSLNNI 642
F SL + P++ L +QVLD SLN+I
Sbjct: 529 NFF-----------------SLDT------FPYKC--LNSLQVLDYSLNHI 554
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 33.5 bits (75), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 8/73 (10%)
Query: 310 IPDLGGF---SSLKELYLGENSLNGTINKSLNHLFKLETLSLDGNSFTGVISETFFSNMS 366
I D+ G L+ LYLG N + L+ L KL+TLSL+ N ++ + ++
Sbjct: 122 ISDINGLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQIRRIVP---LARLT 176
Query: 367 NLQMLYLANNPLT 379
LQ LYL+ N ++
Sbjct: 177 KLQNLYLSKNHIS 189
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 33.5 bits (75), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 70/173 (40%), Gaps = 23/173 (13%)
Query: 468 VDISSNHFTGQIPPLPSNSTFLNLSKN-KFSGSITFLCSIIENTW--------------- 511
V+ + T P LP ++T L+LS+N ++ S+ L T
Sbjct: 15 VNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDG 74
Query: 512 -----NIFDLSSNLLSGELPDCWLNFNSLFILNLANNSFSGKIPDSMGFLHNIRTLSLNN 566
DLS N L LP +L +L+++ N + ++ L ++ L L
Sbjct: 75 TLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 567 NRLTRELPSSLKNCSQLRVLDLRNNALFGEIPIWIGGNLQNLIVLSLKSNNFH 619
N L P L +L L L NN L E+P + L+NL L L+ N+ +
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNNL-TELPAGLLNGLENLDTLLLQENSLY 185
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 80/195 (41%), Gaps = 23/195 (11%)
Query: 185 HFNLSTSIETLDLFDNNLPSSSVYPWFLNLSRNILHLNLASNSLQGPIPEAFQHMVSLRF 244
H ++ L +LP + L+LS N+L+ + SL +P ++L
Sbjct: 12 HLEVNCDKRNLTALPPDLPKDTT---ILHLSENLLY----TFSLATLMPYTRLTQLNLDR 64
Query: 245 LALSSNELEGGIPKFFGNMCSLNELYLLNNKLSGQLSEFIQNLSSGCTVNSLEGLCLYDN 304
L+ +++G +P S N+L L L GQ T+ +L L + N
Sbjct: 65 AELTKLQVDGTLPVLGTLDLSHNQLQSL--PLLGQ------------TLPALTVLDVSFN 110
Query: 305 DITG-PIPDLGGFSSLKELYLGENSLNGTINKSLNHLFKLETLSLDGNSFTGVISETFFS 363
+T P+ L G L+ELYL N L L KLE LSL N+ T + +
Sbjct: 111 RLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE-LPAGLLN 169
Query: 364 NMSNLQMLYLANNPL 378
+ NL L L N L
Sbjct: 170 GLENLDTLLLQENSL 184
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 33.5 bits (75), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 52/125 (41%), Gaps = 11/125 (8%)
Query: 232 IPEAFQHMVSLRFLALSSNELEGGIPKFFGNMCSLNELYLLNNKLSGQLSEFIQNLSSGC 291
+P+ Q L L L+ N L ++ SLN L L+ + +L+E + L+S
Sbjct: 119 LPDTXQQFAGLETLTLARNPLRA----LPASIASLNRLRELSIRACPELTELPEPLASTD 174
Query: 292 TVNSLEGLC------LYDNDITGPIPDLGGFSSLKELYLGENSLNGTINKSLNHLFKLET 345
+GL L I + +LK L + NS + +++HL KLE
Sbjct: 175 ASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKI-RNSPLSALGPAIHHLPKLEE 233
Query: 346 LSLDG 350
L L G
Sbjct: 234 LDLRG 238
>pdb|2WQW|A Chain A, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQW|B Chain B, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
Length = 286
Score = 33.5 bits (75), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 8/73 (10%)
Query: 310 IPDLGGF---SSLKELYLGENSLNGTINKSLNHLFKLETLSLDGNSFTGVISETFFSNMS 366
I D+ G L+ LYLG N + L+ L KL+TLSL+ N + ++ + ++
Sbjct: 119 ISDINGLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVP---LACLT 173
Query: 367 NLQMLYLANNPLT 379
LQ LYL+ N ++
Sbjct: 174 KLQNLYLSKNHIS 186
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 33.5 bits (75), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 725 MDLDGLIALNLSRNNLTGPISPKIGQLKSLDFLDLSRN--HFSGSIPSSLVKLCGLGVLD 782
+DL L +L L+ N G IS K L SL +LDLSRN FSG S + L LD
Sbjct: 320 LDLPFLKSLTLTMNK--GSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLD 377
Query: 783 LSYN 786
LS+N
Sbjct: 378 LSFN 381
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 33.1 bits (74), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 725 MDLDGLIALNLSRNNLTGPISPKIGQLKSLDFLDLSRN--HFSGSIPSSLVKLCGLGVLD 782
+DL L +L L+ N G IS K L SL +LDLSRN FSG S + L LD
Sbjct: 325 LDLPFLKSLTLTMNK--GSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLD 382
Query: 783 LSYN 786
LS+N
Sbjct: 383 LSFN 386
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 33.1 bits (74), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 84/191 (43%), Gaps = 13/191 (6%)
Query: 315 GFSSLKELYLGENSLNGTINKSLNHL--FKLETLSLDGNSFTGVISETFFSNMSNLQMLY 372
G +SLK L L S NG I S N L +LE L ++ + + F ++ NL L
Sbjct: 371 GTTSLKYLDL---SFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD 427
Query: 373 LANNPLTMKLSHDWVPPFQLKWLSLASCKMGPNF-PKWLRTQSQLILLDISNTGISGTVP 431
+++ + + + L+ L +A NF P L LD+S + P
Sbjct: 428 ISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP 487
Query: 432 DWFWDLSVELFFLNLSNNHIKGKLPDLSFLRSDDI-VVDISSNHF----TGQIPPLPSNS 486
F LS L LN+S+N+ L + + + V+D S NH ++ PS+
Sbjct: 488 TAFNSLS-SLQVLNMSHNNF-FSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSL 545
Query: 487 TFLNLSKNKFS 497
FLNL++N F+
Sbjct: 546 AFLNLTQNDFA 556
Score = 33.1 bits (74), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 3/98 (3%)
Query: 284 IQNLSSGC--TVNSLEGLCLYDNDITG-PIPDLGGFSSLKELYLGENSLNGTINKSLNHL 340
IQ + G +++ L L L N I + G SSL++L E +L N + HL
Sbjct: 64 IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHL 123
Query: 341 FKLETLSLDGNSFTGVISETFFSNMSNLQMLYLANNPL 378
L+ L++ N +FSN++NL+ L L++N +
Sbjct: 124 KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
Score = 32.7 bits (73), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 57/202 (28%), Positives = 86/202 (42%), Gaps = 14/202 (6%)
Query: 591 NALFGEIPIWIGGNLQNLIVLSLKSNNFHGNIPFQLCYLAFIQVLDLSLNNISGKIPKCF 650
N FG+ P L++L L+ SN G F L ++ LDLS N +S K
Sbjct: 313 NCKFGQFPTL---KLKSLKRLTFTSNK--GGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQ 367
Query: 651 SNFSTM---IQERSSDPIIGMANRIWVLPGYVYQYRYLDNILLTWKG-SEHEYKSTLGFV 706
S+F T + S + +I M++ L Q +LD K SE +L +
Sbjct: 368 SDFGTTSLKYLDLSFNGVITMSSNFLGLE----QLEHLDFQHSNLKQMSEFSVFLSLRNL 423
Query: 707 KCLDLSSNKLCGPILEEIMDLDGLIALNLSRNNLTGPISPKI-GQLKSLDFLDLSRNHFS 765
LD+S L L L ++ N+ P I +L++L FLDLS+
Sbjct: 424 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 483
Query: 766 GSIPSSLVKLCGLGVLDLSYNN 787
P++ L L VL++S+NN
Sbjct: 484 QLSPTAFNSLSSLQVLNMSHNN 505
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 53/111 (47%), Gaps = 26/111 (23%)
Query: 533 NSLFILNLANNSFSGK-IPDSMGFLHNIRTLSLNNNRLTRELPSSLKNCSQLRVLDLRNN 591
+SL +L +A NSF +PD L N+ L L+ +L + P++ + S L+VL++ +N
Sbjct: 445 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 504
Query: 592 ALFGEIPIWIGGNLQNLIVLSLKSNNFHGNIPFQLCYLAFIQVLDLSLNNI 642
F SL + P++ L +QVLD SLN+I
Sbjct: 505 NFF-----------------SLDT------FPYKC--LNSLQVLDYSLNHI 530
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 33.1 bits (74), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 70/173 (40%), Gaps = 23/173 (13%)
Query: 468 VDISSNHFTGQIPPLPSNSTFLNLSKN-KFSGSITFLCSIIENTW--------------- 511
V+ + T P LP ++T L+LS+N ++ S+ L T
Sbjct: 15 VNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDG 74
Query: 512 -----NIFDLSSNLLSGELPDCWLNFNSLFILNLANNSFSGKIPDSMGFLHNIRTLSLNN 566
DLS N L LP +L +L+++ N + ++ L ++ L L
Sbjct: 75 TLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 567 NRLTRELPSSLKNCSQLRVLDLRNNALFGEIPIWIGGNLQNLIVLSLKSNNFH 619
N L P L +L L L NN L E+P + L+NL L L+ N+ +
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNNL-TELPAGLLNGLENLDTLLLQENSLY 185
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 80/195 (41%), Gaps = 23/195 (11%)
Query: 185 HFNLSTSIETLDLFDNNLPSSSVYPWFLNLSRNILHLNLASNSLQGPIPEAFQHMVSLRF 244
H ++ L +LP + L+LS N+L+ + SL +P ++L
Sbjct: 12 HLEVNCDKRNLTALPPDLPKDTT---ILHLSENLLY----TFSLATLMPYTRLTQLNLDR 64
Query: 245 LALSSNELEGGIPKFFGNMCSLNELYLLNNKLSGQLSEFIQNLSSGCTVNSLEGLCLYDN 304
L+ +++G +P S N+L L L GQ T+ +L L + N
Sbjct: 65 AELTKLQVDGTLPVLGTLDLSHNQLQSL--PLLGQ------------TLPALTVLDVSFN 110
Query: 305 DITG-PIPDLGGFSSLKELYLGENSLNGTINKSLNHLFKLETLSLDGNSFTGVISETFFS 363
+T P+ L G L+ELYL N L L KLE LSL N+ T + +
Sbjct: 111 RLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE-LPAGLLN 169
Query: 364 NMSNLQMLYLANNPL 378
+ NL L L N L
Sbjct: 170 GLENLDTLLLQENSL 184
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 33.1 bits (74), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 70/173 (40%), Gaps = 23/173 (13%)
Query: 468 VDISSNHFTGQIPPLPSNSTFLNLSKN-KFSGSITFLCSIIENTW--------------- 511
V+ + T P LP ++T L+LS+N ++ S+ L T
Sbjct: 15 VNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDG 74
Query: 512 -----NIFDLSSNLLSGELPDCWLNFNSLFILNLANNSFSGKIPDSMGFLHNIRTLSLNN 566
DLS N L LP +L +L+++ N + ++ L ++ L L
Sbjct: 75 TLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 567 NRLTRELPSSLKNCSQLRVLDLRNNALFGEIPIWIGGNLQNLIVLSLKSNNFH 619
N L P L +L L L NN L E+P + L+NL L L+ N+ +
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNNL-TELPAGLLNGLENLDTLLLQENSLY 185
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 80/195 (41%), Gaps = 23/195 (11%)
Query: 185 HFNLSTSIETLDLFDNNLPSSSVYPWFLNLSRNILHLNLASNSLQGPIPEAFQHMVSLRF 244
H ++ L +LP + L+LS N+L+ + SL +P ++L
Sbjct: 12 HLEVNCDKRNLTALPPDLPKDTT---ILHLSENLLY----TFSLATLMPYTRLTQLNLDR 64
Query: 245 LALSSNELEGGIPKFFGNMCSLNELYLLNNKLSGQLSEFIQNLSSGCTVNSLEGLCLYDN 304
L+ +++G +P S N+L L L GQ T+ +L L + N
Sbjct: 65 AELTKLQVDGTLPVLGTLDLSHNQLQSL--PLLGQ------------TLPALTVLDVSFN 110
Query: 305 DITG-PIPDLGGFSSLKELYLGENSLNGTINKSLNHLFKLETLSLDGNSFTGVISETFFS 363
+T P+ L G L+ELYL N L L KLE LSL N+ T + +
Sbjct: 111 RLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE-LPAGLLN 169
Query: 364 NMSNLQMLYLANNPL 378
+ NL L L N L
Sbjct: 170 GLENLDTLLLQENSL 184
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 84/191 (43%), Gaps = 13/191 (6%)
Query: 315 GFSSLKELYLGENSLNGTINKSLNHL--FKLETLSLDGNSFTGVISETFFSNMSNLQMLY 372
G +SLK L L S NG I S N L +LE L ++ + + F ++ NL L
Sbjct: 76 GTTSLKYLDL---SFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD 132
Query: 373 LANNPLTMKLSHDWVPPFQLKWLSLASCKMGPNF-PKWLRTQSQLILLDISNTGISGTVP 431
+++ + + + L+ L +A NF P L LD+S + P
Sbjct: 133 ISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP 192
Query: 432 DWFWDLSVELFFLNLSNNHIKGKLPDLSFLRSDDI-VVDISSNHF----TGQIPPLPSNS 486
F LS L LN+S+N+ L + + + V+D S NH ++ PS+
Sbjct: 193 TAFNSLS-SLQVLNMSHNNF-FSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSL 250
Query: 487 TFLNLSKNKFS 497
FLNL++N F+
Sbjct: 251 AFLNLTQNDFA 261
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 727 LDGLIALNLSRNNLTGPISPKI-GQLKSLDFLDLSRNHFSGSIPSSLVKLCGLGVLDLSY 785
L L L ++ N+ P I +L++L FLDLS+ P++ L L VL++S+
Sbjct: 149 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 208
Query: 786 NN 787
NN
Sbjct: 209 NN 210
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 53/111 (47%), Gaps = 26/111 (23%)
Query: 533 NSLFILNLANNSFSGK-IPDSMGFLHNIRTLSLNNNRLTRELPSSLKNCSQLRVLDLRNN 591
+SL +L +A NSF +PD L N+ L L+ +L + P++ + S L+VL++ +N
Sbjct: 150 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 209
Query: 592 ALFGEIPIWIGGNLQNLIVLSLKSNNFHGNIPFQLCYLAFIQVLDLSLNNI 642
F SL + P++ L +QVLD SLN+I
Sbjct: 210 NFF-----------------SLDT------FPYKC--LNSLQVLDYSLNHI 235
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 49/108 (45%), Gaps = 26/108 (24%)
Query: 192 IETLDLFDNNLPSSSVYPWFLNLSRNILHLN------------------------LASNS 227
+E LD +NL S + FL+L RN+++L+ +A NS
Sbjct: 103 LEHLDFQHSNLKQMSEFSVFLSL-RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS 161
Query: 228 LQGP-IPEAFQHMVSLRFLALSSNELEGGIPKFFGNMCSLNELYLLNN 274
Q +P+ F + +L FL LS +LE P F ++ SL L + +N
Sbjct: 162 FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 209
Score = 29.3 bits (64), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 47/99 (47%), Gaps = 9/99 (9%)
Query: 154 DWFQVVANLHYLKSLVLRSCALPPINPSFIWHFNLSTSIETLDLFDNNLPSSSVYPWFLN 213
D F + NL +L L C L ++P+ FN +S++ L++ NN S +P+
Sbjct: 169 DIFTELRNLTFLD---LSQCQLEQLSPT---AFNSLSSLQVLNMSHNNFFSLDTFPYKCL 222
Query: 214 LSRNILHLNLASNSLQGPIPEAFQHM-VSLRFLALSSNE 251
S +L +L N + + QH SL FL L+ N+
Sbjct: 223 NSLQVLDYSL--NHIMTSKKQELQHFPSSLAFLNLTQND 259
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 71/165 (43%), Gaps = 18/165 (10%)
Query: 219 LHLNLASNSLQGPIPEAFQHMVSLRFLALSSNELE--GGIPKFFGNMCSLNELYLLNNKL 276
LHL+ ++N L + E H+ L L L N+L+ I + M SL +L + N +
Sbjct: 327 LHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSV 386
Query: 277 SGQLSEFIQNLSSGCTVNSLEGLCLYDNDITGPIPDLGGFSSL----KELYLGENSLNGT 332
S + + SL L + N +T I F L K L L N + +
Sbjct: 387 S-----YDEKKGDCSWTKSLLSLNMSSNILTDTI-----FRCLPPRIKVLDLHSNKIK-S 435
Query: 333 INKSLNHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLYLANNP 377
I K + L L+ L++ N V + F +++LQ ++L NP
Sbjct: 436 IPKQVVKLEALQELNVASNQLKSV-PDGIFDRLTSLQKIWLHTNP 479
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 79/198 (39%), Gaps = 54/198 (27%)
Query: 195 LDLFDNNLPSSSVYPWFLNLSRNILHLNLASNSLQGPIPEAFQHMVSLRFLALSSNELEG 254
LDL NNL S W N+ L L+ N L EAF + +LR+L LSSN L
Sbjct: 44 LDLSHNNL-SRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHT 102
Query: 255 GIPKFFGNMCSLNELYLLNNKLSGQLSEFIQNLSSGCTVNSLEGLCLYDNDITGPIPDLG 314
L EF+ + +LE L LY+N I + D
Sbjct: 103 -------------------------LDEFL-----FSDLQALEVLLLYNNHIV--VVDRN 130
Query: 315 GF---SSLKELYLGENSLNG---TINKSLNHLFKLETLSLDGNSFTGVISETFFSNMSNL 368
F + L++LYL +N ++ + K N L KL L L N + +++L
Sbjct: 131 AFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLP-------LTDL 183
Query: 369 QM--------LYLANNPL 378
Q LYL NNPL
Sbjct: 184 QKLPAWVKNGLYLHNNPL 201
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Query: 297 EGLCLYDNDITGPIPDL-GGFSSLKELYLGENSLNGTINKSLNHLFKLETLSLDGNSFTG 355
+ L L +N IT P + +L++LY N L + L +L L L+ N
Sbjct: 36 QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKS 95
Query: 356 VISETFFSNMSNLQMLYLANNP 377
I F N+ +L +YL NNP
Sbjct: 96 -IPRGAFDNLKSLTHIYLYNNP 116
>pdb|4ITR|A Chain A, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
pdb|4ITR|B Chain B, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
Length = 316
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 7/66 (10%)
Query: 710 DLSSNKLCGPILEEIMDLDGLIALNLSRN-NLTGPISPKIGQLKSLDFLDLSRNHFSGSI 768
D ++NK+ LE+ ++L GLI+L RN N + LK+ FLD +R SI
Sbjct: 1 DETANKVNYQDLEDNLNLKGLISLEDDRNANFESNV------LKNEKFLDEAREISKKSI 54
Query: 769 PSSLVK 774
P + VK
Sbjct: 55 PEATVK 60
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 316 FSSLKELYLGENSLNGTINKSLNHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLYLAN 375
+ L L L N L ++ + L L LSL GN + V+ E F+++S L L +
Sbjct: 77 MTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGA 135
Query: 376 NPLTMKLSHDWV 387
NPL + W+
Sbjct: 136 NPLYCDCNMQWL 147
>pdb|3OJA|A Chain A, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 487
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 78/292 (26%), Positives = 114/292 (39%), Gaps = 50/292 (17%)
Query: 479 IPPLPSNSTFLNLSKNKFSGSITFLCSIIENTWNI--FDLSSNLLSGELPDCWLNFNSLF 536
I + N + K S L S+ ++ WN+ DLS N LS F L
Sbjct: 2 IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61
Query: 537 ILNLANNSFSGKIPDSMGFLHNIRTLSLNNNRLTREL--PSSLKNCSQLRVLDLRNNALF 594
+LNL++N + + L +RTL LNNN + L PS + L NN +
Sbjct: 62 LLNLSSNVLYETL--DLESLSTLRTLDLNNNYVQELLVGPS-------IETLHAANNNI- 111
Query: 595 GEIPIWIGGNLQNLIVLSLKSNNFHGNIPFQLCYLAFIQVLDLSLNNISGKIPKCFSNFS 654
+ G +N+ L +N + +Q LDL LN I NF+
Sbjct: 112 SRVSCSRGQGKKNIY---LANNKITMLRDLDEGCRSRVQYLDLKLNEIDT------VNFA 162
Query: 655 TMIQERSSDPIIGMANRIWVLPGYVYQYRYLDNILLTWKGSEHEYKSTLGFVKCLDLSSN 714
+ SSD L QY ++ ++ KG + +K LDLSSN
Sbjct: 163 ELAA--SSD----------TLEHLNLQYNFIYDV----KG-----QVVFAKLKTLDLSSN 201
Query: 715 KLC--GPILEEIMDLDGLIALNLSRNNLTGPISPKIGQLKSLDFLDLSRNHF 764
KL GP E G+ ++L RNN I + ++L+ DL N F
Sbjct: 202 KLAFMGP---EFQSAAGVTWISL-RNNKLVLIEKALRFSQNLEHFDLRGNGF 249
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 70/290 (24%), Positives = 117/290 (40%), Gaps = 28/290 (9%)
Query: 497 SGSITFLCSIIENTWNIFDLSSNLLS----GELPDCWLNFNSLFILNLANNSFSGKIPDS 552
SGS+ + S + DLS+N ++ +L C +N +L L +N + DS
Sbjct: 40 SGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRC-VNLQALV---LTSNGINTIEEDS 95
Query: 553 MGFLHNIRTLSLNNNRLTRELPSSLKNCSQLRVLDLRNN--ALFGEIPIWIGGNLQNLIV 610
L ++ L L+ N L+ S K S L L+L N GE ++ +L L +
Sbjct: 96 FSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLF--SHLTKLQI 153
Query: 611 LSLKSNNFHGNIPFQ-LCYLAFIQVLDLSLNNISGKIPKCFSNFSTMIQERSSDPIIGMA 669
L + + + I + L F++ L++ +++ PK + + S I+ M
Sbjct: 154 LRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNV-----SHLILHMK 208
Query: 670 NRIWVLPGYVYQYRYL------DNILLTWKGSEHEYKSTLGFVKCLDLSSNKLCGPILEE 723
I +L +V + D L T+ SE T +K + K+ L +
Sbjct: 209 QHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQ 268
Query: 724 IMDL----DGLIALNLSRNNLTGPISPKIGQLKSLDFLDLSRNHFSGSIP 769
+M L GL+ L SRN L +L SL + L N + S P
Sbjct: 269 VMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 318
>pdb|3O53|A Chain A, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
pdb|3O53|B Chain B, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
Length = 317
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 78/292 (26%), Positives = 114/292 (39%), Gaps = 50/292 (17%)
Query: 479 IPPLPSNSTFLNLSKNKFSGSITFLCSIIENTWNI--FDLSSNLLSGELPDCWLNFNSLF 536
I + N + K S L S+ ++ WN+ DLS N LS F L
Sbjct: 2 IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61
Query: 537 ILNLANNSFSGKIPDSMGFLHNIRTLSLNNNRLTREL--PSSLKNCSQLRVLDLRNNALF 594
+LNL++N + + L +RTL LNNN + L PS + L NN +
Sbjct: 62 LLNLSSNVLYETL--DLESLSTLRTLDLNNNYVQELLVGPS-------IETLHAANNNI- 111
Query: 595 GEIPIWIGGNLQNLIVLSLKSNNFHGNIPFQLCYLAFIQVLDLSLNNISGKIPKCFSNFS 654
+ G +N+ L +N + +Q LDL LN I NF+
Sbjct: 112 SRVSCSRGQGKKNIY---LANNKITMLRDLDEGCRSRVQYLDLKLNEIDT------VNFA 162
Query: 655 TMIQERSSDPIIGMANRIWVLPGYVYQYRYLDNILLTWKGSEHEYKSTLGFVKCLDLSSN 714
+ SSD L QY ++ ++ KG + +K LDLSSN
Sbjct: 163 ELAA--SSD----------TLEHLNLQYNFIYDV----KG-----QVVFAKLKTLDLSSN 201
Query: 715 KLC--GPILEEIMDLDGLIALNLSRNNLTGPISPKIGQLKSLDFLDLSRNHF 764
KL GP E G+ ++L RNN I + ++L+ DL N F
Sbjct: 202 KLAFMGP---EFQSAAGVTWISL-RNNKLVLIEKALRFSQNLEHFDLRGNGF 249
>pdb|1DS9|A Chain A, Solution Structure Of Chlamydomonas Outer Arm Dynein Light
Chain 1
Length = 198
Score = 30.8 bits (68), Expect = 3.2, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 5/88 (5%)
Query: 292 TVNSLEGLCLYDNDITGPIPDLGGFSSLKELYLGENSLNGTINKSLNHLFKLETLSLDGN 351
T+ + + L L N+I I L G +L+ L LG N I K N +TL
Sbjct: 46 TLKACKHLALSTNNIE-KISSLSGMENLRILSLGRN----LIKKIENLDAVADTLEELWI 100
Query: 352 SFTGVISETFFSNMSNLQMLYLANNPLT 379
S+ + S + + NL++LY++NN +T
Sbjct: 101 SYNQIASLSGIEKLVNLRVLYMSNNKIT 128
>pdb|1M9L|A Chain A, Relaxation-Based Refined Structure Of Chlamydomonas Outer
Arm Dynein Light Chain 1
Length = 199
Score = 30.8 bits (68), Expect = 3.3, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 5/88 (5%)
Query: 292 TVNSLEGLCLYDNDITGPIPDLGGFSSLKELYLGENSLNGTINKSLNHLFKLETLSLDGN 351
T+ + + L L N+I I L G +L+ L LG N I K N +TL
Sbjct: 47 TLKACKHLALSTNNIE-KISSLSGMENLRILSLGRN----LIKKIENLDAVADTLEELWI 101
Query: 352 SFTGVISETFFSNMSNLQMLYLANNPLT 379
S+ + S + + NL++LY++NN +T
Sbjct: 102 SYNQIASLSGIEKLVNLRVLYMSNNKIT 129
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 5/91 (5%)
Query: 160 ANLHYLKSLVLRSCALPPINPSFIWHFNLSTSIETLDLFDNNLPSSSVYPWFLNLSRNIL 219
L +L L L+ L I P+ F ++ I+ L L +N + S FL L + +
Sbjct: 51 GRLPHLVKLELKRNQLTGIEPNA---FEGASHIQELQLGENKIKEIS-NKMFLGLHQ-LK 105
Query: 220 HLNLASNSLQGPIPEAFQHMVSLRFLALSSN 250
LNL N + +P +F+H+ SL L L+SN
Sbjct: 106 TLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
Score = 29.3 bits (64), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 50/111 (45%), Gaps = 18/111 (16%)
Query: 223 LASNSLQGPIPEAFQHMVSLRFLALSSNELEGGIPKFFGNMCSLNELYLLNNKLSGQLSE 282
++S+ L G +P H+V L L N+L G P F + EL L NK + E
Sbjct: 44 ISSDGLFGRLP----HLVKLE---LKRNQLTGIEPNAFEGASHIQELQLGENK----IKE 92
Query: 283 FIQNLSSGCTVNSLEGLCLYDNDITGPIPDLGGFS---SLKELYLGENSLN 330
+ G ++ L+ L LYDN I+ +P G F SL L L N N
Sbjct: 93 ISNKMFLG--LHQLKTLNLYDNQISCVMP--GSFEHLNSLTSLNLASNPFN 139
Score = 29.3 bits (64), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Query: 514 FDLSSNLLSGELPDCWLNFNSLFILNLANNSFSGKIPDSMGF-LHNIRTLSLNNNRLTRE 572
+L N L+G P+ + + + L L N +I + M LH ++TL+L +N+++
Sbjct: 59 LELKRNQLTGIEPNAFEGASHIQELQLGENKIK-EISNKMFLGLHQLKTLNLYDNQISCV 117
Query: 573 LPSSLKNCSQLRVLDLRNN 591
+P S ++ + L L+L +N
Sbjct: 118 MPGSFEHLNSLTSLNLASN 136
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 6/88 (6%)
Query: 189 STSIETLDLFDNNLPS--SSVYPWFLNLSRNILHLNLASNSLQGPIPEAFQHMVSLRFLA 246
++ ++T DL + + + SV+ F +L + L LA N + AF + L+ LA
Sbjct: 274 ASGVKTCDLSKSKIFALLKSVFSHFTDLEQ----LTLAQNEINKIDDNAFWGLTHLKELA 329
Query: 247 LSSNELEGGIPKFFGNMCSLNELYLLNN 274
L +N+L+ F + SL +++L N
Sbjct: 330 LDTNQLKSVPDGIFDRLTSLQKIWLHTN 357
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 30.4 bits (67), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 83/178 (46%), Gaps = 32/178 (17%)
Query: 447 SNNHIKGKLPDLSFLRSDDIVVDISSNHFTGQIPPLPSNSTFLNLSKNKFSGSITFLCSI 506
++N++ LPDL +++ N+ T +P LP + TFL++S+N FSG L +
Sbjct: 244 ADNNLLKTLPDLPPSLE---ALNVRDNYLTD-LPELPQSLTFLDVSENIFSG----LSEL 295
Query: 507 IENTWNIFDLSSNLLSG--ELPDCWLNFNSLFILNLANNSFSGKIPDSMGFLHNIRTLSL 564
N + + SSN + +LP SL LN++NN ++P L + S
Sbjct: 296 PPNLY-YLNASSNEIRSLCDLPP------SLEELNVSNNKL-IELPALPPRLERL-IASF 346
Query: 565 NNNRLTRELPSSLKNC----SQLR--------VLDLRNNALFGEIPIWIGGNLQNLIV 610
N+ ELP +LK + LR V DLR N+ E+P + NL+ L V
Sbjct: 347 NHLAEVPELPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVP-ELPQNLKQLHV 403
>pdb|1FCD|C Chain C, The Structure Of Flavocytochrome C Sulfide Dehydrogenase
From A Purple Phototrophic Bacterium Chromatium Vinosum
At 2.5 Angstroms Resolution
pdb|1FCD|D Chain D, The Structure Of Flavocytochrome C Sulfide Dehydrogenase
From A Purple Phototrophic Bacterium Chromatium Vinosum
At 2.5 Angstroms Resolution
Length = 174
Score = 30.4 bits (67), Expect = 4.7, Method: Composition-based stats.
Identities = 14/55 (25%), Positives = 26/55 (47%)
Query: 736 SRNNLTGPISPKIGQLKSLDFLDLSRNHFSGSIPSSLVKLCGLGVLDLSYNNLSG 790
+ N GP SP I Q+ + F+++ SG I S+++ G + ++G
Sbjct: 17 THGNSVGPASPSIAQMDPMVFVEVMEGFKSGEIASTIMGRIAKGYSTADFEKMAG 71
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 30.0 bits (66), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 72/157 (45%), Gaps = 13/157 (8%)
Query: 226 NSLQGPIPEAFQHMVSLRFLALSSNELEGGIPKFFGNMCSLNELYLLNNKLSG-QLSEFI 284
N+++G +AF + SL L LS N L +FG + SL L L+ N ++
Sbjct: 89 NTIEG---DAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLF 145
Query: 285 QNLSSGCTVNSLEGLCLYDNDITGPIP--DLGGFSSLKELYLGENSLNGTINKSLNHLFK 342
NL+ +L+ L + + + I D G +SL EL + SL ++SL +
Sbjct: 146 PNLT------NLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRD 199
Query: 343 LETLSLDGNSFTGVISETFFSNMSNLQMLYLANNPLT 379
+ L+L S + + E F +S+++ L L + L
Sbjct: 200 IHHLTLHL-SESAFLLEIFADILSSVRYLELRDTNLA 235
Score = 29.6 bits (65), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 12/83 (14%)
Query: 293 VNSLEGLCLYDNDITGPIPDLGGFSSLKELYLGENSLNGTINKSLNHLFKLETLSLDGNS 352
+N++EG Y SL+ L L +N L+ + L L+ L+L GN
Sbjct: 88 INTIEGDAFY------------SLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNP 135
Query: 353 FTGVISETFFSNMSNLQMLYLAN 375
+ + + F N++NLQ L + N
Sbjct: 136 YQTLGVTSLFPNLTNLQTLRIGN 158
>pdb|3VRD|A Chain A, Crystal Structure Of Flavocytochrome C From
Thermochromatium Tepidum
Length = 174
Score = 30.0 bits (66), Expect = 6.3, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 736 SRNNLTGPISPKIGQLKSLDFLDLSRNHFSGSIPSSLV 773
+R N GP SP I Q+ F+++ SG I S+++
Sbjct: 17 TRGNSAGPASPSIAQMDPAVFVEVMEQFKSGEIQSTIM 54
>pdb|2FL8|A Chain A, Fitting Of The Gp10 Trimer Structure Into The Cryoem Map
Of The Bacteriophage T4 Baseplate In The Hexagonal
Conformation.
pdb|2FL8|B Chain B, Fitting Of The Gp10 Trimer Structure Into The Cryoem Map
Of The Bacteriophage T4 Baseplate In The Hexagonal
Conformation.
pdb|2FL8|C Chain C, Fitting Of The Gp10 Trimer Structure Into The Cryoem Map
Of The Bacteriophage T4 Baseplate In The Hexagonal
Conformation.
pdb|2FL8|D Chain D, Fitting Of The Gp10 Trimer Structure Into The Cryoem Map
Of The Bacteriophage T4 Baseplate In The Hexagonal
Conformation.
pdb|2FL8|E Chain E, Fitting Of The Gp10 Trimer Structure Into The Cryoem Map
Of The Bacteriophage T4 Baseplate In The Hexagonal
Conformation.
pdb|2FL8|F Chain F, Fitting Of The Gp10 Trimer Structure Into The Cryoem Map
Of The Bacteriophage T4 Baseplate In The Hexagonal
Conformation.
pdb|2FL8|G Chain G, Fitting Of The Gp10 Trimer Structure Into The Cryoem Map
Of The Bacteriophage T4 Baseplate In The Hexagonal
Conformation.
pdb|2FL8|H Chain H, Fitting Of The Gp10 Trimer Structure Into The Cryoem Map
Of The Bacteriophage T4 Baseplate In The Hexagonal
Conformation.
pdb|2FL8|I Chain I, Fitting Of The Gp10 Trimer Structure Into The Cryoem Map
Of The Bacteriophage T4 Baseplate In The Hexagonal
Conformation.
pdb|2FL8|J Chain J, Fitting Of The Gp10 Trimer Structure Into The Cryoem Map
Of The Bacteriophage T4 Baseplate In The Hexagonal
Conformation.
pdb|2FL8|K Chain K, Fitting Of The Gp10 Trimer Structure Into The Cryoem Map
Of The Bacteriophage T4 Baseplate In The Hexagonal
Conformation.
pdb|2FL8|L Chain L, Fitting Of The Gp10 Trimer Structure Into The Cryoem Map
Of The Bacteriophage T4 Baseplate In The Hexagonal
Conformation.
pdb|2FL8|M Chain M, Fitting Of The Gp10 Trimer Structure Into The Cryoem Map
Of The Bacteriophage T4 Baseplate In The Hexagonal
Conformation.
pdb|2FL8|N Chain N, Fitting Of The Gp10 Trimer Structure Into The Cryoem Map
Of The Bacteriophage T4 Baseplate In The Hexagonal
Conformation.
pdb|2FL8|O Chain O, Fitting Of The Gp10 Trimer Structure Into The Cryoem Map
Of The Bacteriophage T4 Baseplate In The Hexagonal
Conformation.
pdb|2FL8|P Chain P, Fitting Of The Gp10 Trimer Structure Into The Cryoem Map
Of The Bacteriophage T4 Baseplate In The Hexagonal
Conformation.
pdb|2FL8|Q Chain Q, Fitting Of The Gp10 Trimer Structure Into The Cryoem Map
Of The Bacteriophage T4 Baseplate In The Hexagonal
Conformation.
pdb|2FL8|R Chain R, Fitting Of The Gp10 Trimer Structure Into The Cryoem Map
Of The Bacteriophage T4 Baseplate In The Hexagonal
Conformation.
pdb|2FL9|A Chain A, Evolution Of Bacteriophage Tails: Structure Of T4 Gene
Product 10
pdb|2FL9|B Chain B, Evolution Of Bacteriophage Tails: Structure Of T4 Gene
Product 10
pdb|2FL9|C Chain C, Evolution Of Bacteriophage Tails: Structure Of T4 Gene
Product 10
pdb|2FL9|D Chain D, Evolution Of Bacteriophage Tails: Structure Of T4 Gene
Product 10
pdb|2FL9|E Chain E, Evolution Of Bacteriophage Tails: Structure Of T4 Gene
Product 10
pdb|2FL9|F Chain F, Evolution Of Bacteriophage Tails: Structure Of T4 Gene
Product 10
pdb|2FL9|G Chain G, Evolution Of Bacteriophage Tails: Structure Of T4 Gene
Product 10
pdb|2FL9|H Chain H, Evolution Of Bacteriophage Tails: Structure Of T4 Gene
Product 10
pdb|2FL9|I Chain I, Evolution Of Bacteriophage Tails: Structure Of T4 Gene
Product 10
pdb|2FL9|J Chain J, Evolution Of Bacteriophage Tails: Structure Of T4 Gene
Product 10
pdb|2FL9|K Chain K, Evolution Of Bacteriophage Tails: Structure Of T4 Gene
Product 10
pdb|2FL9|L Chain L, Evolution Of Bacteriophage Tails: Structure Of T4 Gene
Product 10
pdb|2FL9|M Chain M, Evolution Of Bacteriophage Tails: Structure Of T4 Gene
Product 10
pdb|2FL9|N Chain N, Evolution Of Bacteriophage Tails: Structure Of T4 Gene
Product 10
pdb|2FL9|O Chain O, Evolution Of Bacteriophage Tails: Structure Of T4 Gene
Product 10
pdb|2FL9|P Chain P, Evolution Of Bacteriophage Tails: Structure Of T4 Gene
Product 10
pdb|2FL9|Q Chain Q, Evolution Of Bacteriophage Tails: Structure Of T4 Gene
Product 10
pdb|2FL9|R Chain R, Evolution Of Bacteriophage Tails: Structure Of T4 Gene
Product 10
Length = 602
Score = 29.6 bits (65), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 61/138 (44%), Gaps = 12/138 (8%)
Query: 196 DLFDNNLPSSSVYPWFLNLSRNILHLNLASNSL--QGPIPEAFQHMVSLRFLALSSNELE 253
++FD P ++Y +N + + ++ S L QG + + +S AL++N+L+
Sbjct: 448 NIFDTIYPIGTIYENAVNPNNPVTYMGFGSWKLFGQGKVLVGWNEDISDPNFALNNNDLD 507
Query: 254 -GGIPKF-FGNMCSLNELYLLNNKL-SGQLSEFIQNLSSGCTVNSLEGLCLYDNDITGPI 310
GG P G + L N L + + E + + +V + G C YD D +GPI
Sbjct: 508 SGGNPSHTAGGTGGSTSVTLENTNLPATETDEEVLIVDENGSV--IVGGCQYDPDESGPI 565
Query: 311 PDLGGFSSLKELYLGENS 328
++ +E NS
Sbjct: 566 -----YTKYREAKASTNS 578
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 29.6 bits (65), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 72/157 (45%), Gaps = 13/157 (8%)
Query: 226 NSLQGPIPEAFQHMVSLRFLALSSNELEGGIPKFFGNMCSLNELYLLNNKLSG-QLSEFI 284
N+++G +AF + SL L LS N L +FG + SL L L+ N ++
Sbjct: 63 NTIEG---DAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLF 119
Query: 285 QNLSSGCTVNSLEGLCLYDNDITGPIP--DLGGFSSLKELYLGENSLNGTINKSLNHLFK 342
NL+ +L+ L + + + I D G +SL EL + SL ++SL +
Sbjct: 120 PNLT------NLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRD 173
Query: 343 LETLSLDGNSFTGVISETFFSNMSNLQMLYLANNPLT 379
+ L+L S + + E F +S+++ L L + L
Sbjct: 174 IHHLTLHL-SESAFLLEIFADILSSVRYLELRDTNLA 209
Score = 29.6 bits (65), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 12/83 (14%)
Query: 293 VNSLEGLCLYDNDITGPIPDLGGFSSLKELYLGENSLNGTINKSLNHLFKLETLSLDGNS 352
+N++EG Y SL+ L L +N L+ + L L+ L+L GN
Sbjct: 62 INTIEGDAFY------------SLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNP 109
Query: 353 FTGVISETFFSNMSNLQMLYLAN 375
+ + + F N++NLQ L + N
Sbjct: 110 YQTLGVTSLFPNLTNLQTLRIGN 132
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 29.3 bits (64), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Query: 216 RNILHLNLASNSLQGPIPEAFQHMVSLRFLALSSNELEGGIPKFFGNMCSLNELYLLNNK 275
RN+ HL L +N + P F + +L + SN+L FG M L +L L +N+
Sbjct: 147 RNLSHLELRANIEEMP-SHLFDDLENLESIEFGSNKLRQMPRGIFGKMPKLKQLNLASNQ 205
Query: 276 LSGQLSEFIQNLSS 289
L L+S
Sbjct: 206 LKSVPDGIFDRLTS 219
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,640,550
Number of Sequences: 62578
Number of extensions: 1101515
Number of successful extensions: 3158
Number of sequences better than 100.0: 118
Number of HSP's better than 100.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 65
Number of HSP's that attempted gapping in prelim test: 2165
Number of HSP's gapped (non-prelim): 538
length of query: 908
length of database: 14,973,337
effective HSP length: 108
effective length of query: 800
effective length of database: 8,214,913
effective search space: 6571930400
effective search space used: 6571930400
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)