Query 002556
Match_columns 908
No_of_seqs 929 out of 5570
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 02:22:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002556.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002556hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 2.2E-73 4.9E-78 715.5 49.1 583 63-816 27-611 (968)
2 PLN00113 leucine-rich repeat r 100.0 2.1E-58 4.5E-63 580.0 38.4 514 109-789 93-607 (968)
3 KOG0472 Leucine-rich repeat pr 100.0 4.4E-42 9.6E-47 349.5 -16.2 491 138-765 46-541 (565)
4 KOG0472 Leucine-rich repeat pr 100.0 1.5E-39 3.2E-44 331.1 -7.1 486 163-794 45-544 (565)
5 KOG4194 Membrane glycoprotein 100.0 9E-37 1.9E-41 323.9 9.5 367 215-639 77-448 (873)
6 KOG4194 Membrane glycoprotein 100.0 2.1E-36 4.5E-41 321.1 9.0 384 266-801 80-464 (873)
7 KOG0618 Serine/threonine phosp 100.0 4.6E-36 9.9E-41 335.5 -0.2 481 142-787 3-487 (1081)
8 KOG0618 Serine/threonine phosp 100.0 7E-35 1.5E-39 326.0 2.6 419 138-643 22-443 (1081)
9 KOG0444 Cytoskeletal regulator 100.0 6.1E-33 1.3E-37 296.0 -2.4 366 190-619 7-375 (1255)
10 KOG0444 Cytoskeletal regulator 100.0 1.2E-32 2.7E-37 293.7 -1.6 395 239-794 6-409 (1255)
11 PLN03210 Resistant to P. syrin 99.9 1.1E-21 2.3E-26 247.4 24.4 327 257-651 551-890 (1153)
12 PLN03210 Resistant to P. syrin 99.9 3.8E-21 8.1E-26 242.5 25.3 256 157-432 552-820 (1153)
13 KOG4237 Extracellular matrix p 99.9 1.3E-23 2.8E-28 215.1 -1.7 426 216-786 67-498 (498)
14 PRK15387 E3 ubiquitin-protein 99.8 6E-21 1.3E-25 222.8 15.5 262 415-794 202-463 (788)
15 PRK15387 E3 ubiquitin-protein 99.8 3.1E-20 6.7E-25 216.9 17.9 129 509-655 342-470 (788)
16 KOG4237 Extracellular matrix p 99.8 9.4E-22 2E-26 201.5 -1.3 299 509-816 67-385 (498)
17 PRK15370 E3 ubiquitin-protein 99.8 3.4E-19 7.3E-24 209.9 13.1 243 467-789 182-428 (754)
18 PRK15370 E3 ubiquitin-protein 99.8 6.7E-19 1.5E-23 207.3 10.9 266 415-792 179-448 (754)
19 cd00116 LRR_RI Leucine-rich re 99.7 6.3E-18 1.4E-22 185.5 7.1 44 407-450 271-318 (319)
20 cd00116 LRR_RI Leucine-rich re 99.7 7.3E-18 1.6E-22 184.9 6.4 276 141-425 2-318 (319)
21 KOG0617 Ras suppressor protein 99.7 1.9E-18 4.2E-23 157.4 -4.9 182 556-794 32-217 (264)
22 KOG0617 Ras suppressor protein 99.7 3.1E-18 6.8E-23 156.0 -3.9 184 532-772 32-219 (264)
23 PLN03150 hypothetical protein; 99.6 1.2E-14 2.5E-19 171.4 13.3 118 705-822 419-538 (623)
24 PLN03150 hypothetical protein; 99.5 3E-13 6.6E-18 159.5 14.2 136 61-237 368-511 (623)
25 KOG0532 Leucine-rich repeat (L 99.3 6.4E-14 1.4E-18 150.8 -3.5 195 532-787 74-271 (722)
26 KOG0532 Leucine-rich repeat (L 99.3 1.8E-13 3.9E-18 147.4 -4.9 194 509-763 75-271 (722)
27 COG4886 Leucine-rich repeat (L 99.2 1.1E-11 2.4E-16 140.0 8.1 83 707-793 212-294 (394)
28 COG4886 Leucine-rich repeat (L 99.2 1.9E-11 4E-16 138.2 7.6 201 513-773 97-298 (394)
29 KOG1909 Ran GTPase-activating 99.1 5.2E-11 1.1E-15 122.0 4.9 249 109-378 30-310 (382)
30 KOG3207 Beta-tubulin folding c 99.1 4.1E-11 8.9E-16 125.9 1.6 212 135-355 119-340 (505)
31 KOG1259 Nischarin, modulator o 99.1 5.1E-11 1.1E-15 118.8 1.9 206 528-793 209-416 (490)
32 KOG1909 Ran GTPase-activating 99.0 9.8E-11 2.1E-15 120.0 3.4 40 133-172 26-67 (382)
33 KOG1259 Nischarin, modulator o 99.0 7.1E-11 1.5E-15 117.7 0.5 132 238-380 282-413 (490)
34 KOG3207 Beta-tubulin folding c 99.0 9.4E-11 2E-15 123.2 1.1 213 158-379 116-339 (505)
35 PF14580 LRR_9: Leucine-rich r 98.9 1.8E-09 4E-14 104.4 5.8 104 217-330 20-126 (175)
36 PF14580 LRR_9: Leucine-rich r 98.9 3E-09 6.4E-14 102.9 6.9 108 161-277 17-126 (175)
37 PF08263 LRRNT_2: Leucine rich 98.8 7.3E-09 1.6E-13 75.1 3.9 40 64-105 2-43 (43)
38 PF13855 LRR_8: Leucine rich r 98.7 5.6E-09 1.2E-13 82.9 3.1 60 729-788 2-61 (61)
39 PF13855 LRR_8: Leucine rich r 98.7 9.5E-09 2.1E-13 81.6 3.5 61 704-764 1-61 (61)
40 KOG0531 Protein phosphatase 1, 98.7 2.3E-09 5E-14 121.3 -0.9 78 707-789 211-290 (414)
41 KOG0531 Protein phosphatase 1, 98.7 3.8E-09 8.2E-14 119.5 0.2 222 509-793 95-322 (414)
42 KOG4658 Apoptotic ATPase [Sign 98.7 3.3E-08 7.1E-13 119.4 7.7 272 137-428 523-808 (889)
43 KOG4658 Apoptotic ATPase [Sign 98.6 7.1E-08 1.5E-12 116.5 8.8 104 217-327 546-652 (889)
44 KOG1859 Leucine-rich repeat pr 98.6 1.1E-09 2.3E-14 121.7 -7.4 126 241-379 165-292 (1096)
45 KOG2120 SCF ubiquitin ligase, 98.4 1.7E-08 3.6E-13 101.2 -2.7 157 190-352 185-349 (419)
46 KOG4579 Leucine-rich repeat (L 98.4 2.9E-08 6.4E-13 88.3 -1.7 86 707-795 80-165 (177)
47 KOG1859 Leucine-rich repeat pr 98.4 2E-08 4.4E-13 111.7 -4.3 127 295-451 165-291 (1096)
48 KOG2120 SCF ubiquitin ligase, 98.4 4.4E-08 9.4E-13 98.3 -1.8 203 110-328 160-374 (419)
49 COG5238 RNA1 Ran GTPase-activa 98.3 2.2E-06 4.9E-11 85.2 7.8 66 314-379 211-285 (388)
50 KOG2982 Uncharacterized conser 98.2 2.8E-07 6E-12 92.6 -0.2 17 410-426 245-261 (418)
51 KOG4579 Leucine-rich repeat (L 98.2 1.7E-07 3.7E-12 83.5 -2.0 101 706-809 55-155 (177)
52 KOG2982 Uncharacterized conser 98.2 4.9E-07 1.1E-11 90.9 0.6 46 134-179 68-113 (418)
53 KOG4341 F-box protein containi 97.9 1.4E-06 3E-11 91.9 -1.8 279 138-426 139-438 (483)
54 KOG3665 ZYG-1-like serine/thre 97.8 2E-05 4.2E-10 93.3 4.3 157 163-347 122-281 (699)
55 PRK15386 type III secretion pr 97.8 5.8E-05 1.3E-09 82.2 7.5 76 553-642 48-124 (426)
56 PF12799 LRR_4: Leucine Rich r 97.7 1.9E-05 4.1E-10 57.3 2.6 36 729-765 2-37 (44)
57 KOG3665 ZYG-1-like serine/thre 97.6 3.7E-05 8.1E-10 90.9 4.5 142 136-284 121-270 (699)
58 COG5238 RNA1 Ran GTPase-activa 97.6 0.00014 3E-09 72.8 7.3 220 110-332 31-287 (388)
59 PF12799 LRR_4: Leucine Rich r 97.6 0.00011 2.5E-09 53.3 4.2 36 217-253 2-37 (44)
60 KOG1644 U2-associated snRNP A' 97.5 0.00014 2.9E-09 70.0 5.7 40 313-352 109-151 (233)
61 PRK15386 type III secretion pr 97.4 0.00042 9.1E-09 75.6 8.7 135 133-305 48-188 (426)
62 KOG4341 F-box protein containi 97.4 1.5E-05 3.2E-10 84.4 -2.8 260 163-427 138-414 (483)
63 KOG1644 U2-associated snRNP A' 97.3 0.00049 1.1E-08 66.2 6.3 39 337-375 109-149 (233)
64 KOG2739 Leucine-rich acidic nu 96.5 0.0016 3.6E-08 65.5 3.0 91 525-619 35-129 (260)
65 PF13306 LRR_5: Leucine rich r 96.5 0.0055 1.2E-07 56.8 6.4 121 235-368 7-128 (129)
66 KOG2739 Leucine-rich acidic nu 96.5 0.0016 3.5E-08 65.6 2.7 57 217-273 92-152 (260)
67 PF13306 LRR_5: Leucine rich r 96.4 0.011 2.4E-07 54.7 7.8 123 527-656 6-128 (129)
68 KOG1947 Leucine rich repeat pr 96.3 0.0021 4.6E-08 74.7 3.0 61 216-276 243-307 (482)
69 KOG2123 Uncharacterized conser 95.5 0.00079 1.7E-08 67.8 -4.5 56 511-570 21-76 (388)
70 KOG2123 Uncharacterized conser 95.4 0.0019 4.2E-08 65.1 -2.2 77 190-270 41-123 (388)
71 KOG1947 Leucine rich repeat pr 95.3 0.008 1.7E-07 69.9 1.9 142 132-274 183-331 (482)
72 PF00560 LRR_1: Leucine Rich R 95.2 0.0084 1.8E-07 36.2 0.9 11 731-741 3-13 (22)
73 PF00560 LRR_1: Leucine Rich R 95.2 0.0071 1.5E-07 36.5 0.5 21 753-774 1-21 (22)
74 KOG4308 LRR-containing protein 93.9 0.0024 5.2E-08 72.6 -6.6 90 238-332 202-305 (478)
75 KOG4308 LRR-containing protein 93.4 0.0017 3.6E-08 73.9 -9.0 135 217-356 145-305 (478)
76 KOG0473 Leucine-rich repeat pr 89.8 0.017 3.7E-07 56.9 -5.0 84 703-789 41-124 (326)
77 PF13504 LRR_7: Leucine rich r 88.7 0.25 5.4E-06 27.6 1.1 11 730-740 3-13 (17)
78 KOG0473 Leucine-rich repeat pr 85.9 0.035 7.7E-07 54.8 -5.5 89 183-277 36-124 (326)
79 smart00369 LRR_TYP Leucine-ric 85.3 0.66 1.4E-05 29.1 1.9 14 752-765 2-15 (26)
80 smart00370 LRR Leucine-rich re 85.3 0.66 1.4E-05 29.1 1.9 14 752-765 2-15 (26)
81 smart00370 LRR Leucine-rich re 82.0 0.93 2E-05 28.4 1.6 17 727-743 1-17 (26)
82 smart00369 LRR_TYP Leucine-ric 82.0 0.93 2E-05 28.4 1.6 17 727-743 1-17 (26)
83 PF13516 LRR_6: Leucine Rich r 81.7 0.31 6.6E-06 30.0 -0.8 15 752-766 2-16 (24)
84 PF13516 LRR_6: Leucine Rich r 79.7 1.1 2.3E-05 27.5 1.2 19 264-282 2-20 (24)
85 KOG3864 Uncharacterized conser 79.2 0.33 7.2E-06 47.4 -1.8 33 139-173 103-135 (221)
86 KOG3864 Uncharacterized conser 76.9 0.66 1.4E-05 45.4 -0.5 38 110-151 102-139 (221)
87 TIGR00864 PCC polycystin catio 75.0 1.5 3.3E-05 58.7 1.9 46 758-803 1-46 (2740)
88 smart00365 LRR_SD22 Leucine-ri 65.8 5.1 0.00011 25.3 1.8 15 751-765 1-15 (26)
89 KOG4242 Predicted myosin-I-bin 63.8 37 0.00079 38.0 9.0 59 511-569 415-480 (553)
90 smart00364 LRR_BAC Leucine-ric 61.2 5.7 0.00012 25.0 1.4 13 753-765 3-15 (26)
91 smart00368 LRR_RI Leucine rich 53.8 10 0.00022 24.3 1.8 14 752-765 2-15 (28)
92 KOG4242 Predicted myosin-I-bin 50.1 69 0.0015 35.9 8.2 139 509-648 214-372 (553)
93 KOG3763 mRNA export factor TAP 40.2 23 0.00049 40.4 2.9 82 161-246 216-307 (585)
94 KOG3763 mRNA export factor TAP 28.2 39 0.00084 38.6 2.3 39 238-278 242-284 (585)
95 KOG1665 AFH1-interacting prote 27.1 79 0.0017 31.5 3.8 39 190-229 171-209 (302)
96 smart00367 LRR_CC Leucine-rich 24.0 51 0.0011 20.4 1.4 11 163-173 2-12 (26)
97 PF15102 TMEM154: TMEM154 prot 23.0 71 0.0015 29.8 2.6 19 861-879 70-88 (146)
98 PTZ00382 Variant-specific surf 21.5 47 0.001 28.8 1.1 9 852-860 68-76 (96)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.2e-73 Score=715.55 Aligned_cols=583 Identities=35% Similarity=0.527 Sum_probs=434.9
Q ss_pred CHHHHHHHHHHHhcCccCcCCCCCCCCCCCCCCCCCccccccCCCCCCeEEEeecCCCcccchhhhhHHhhcCCCCCcEE
Q 002556 63 VDEEREALLTFRQSLVDEYGILSSWGREDGKRDCCKWRGVRCSNTTGHVKVLNLRTSDYEFARRKFLKEWLSHLSSLRHL 142 (908)
Q Consensus 63 ~~~~~~aLl~~k~~~~~~~~~l~~W~~~~~~~~~C~w~gv~C~~~~~~v~~l~L~~~~l~~~~~~~~~~~l~~l~~L~~L 142 (908)
.++|++||++||+++.+|.+.+.+|+ .+.+||.|.||+|++ .++|+.|+|++++++|..+ ..+..+++|++|
T Consensus 27 ~~~~~~~l~~~~~~~~~~~~~~~~w~---~~~~~c~w~gv~c~~-~~~v~~L~L~~~~i~~~~~----~~~~~l~~L~~L 98 (968)
T PLN00113 27 HAEELELLLSFKSSINDPLKYLSNWN---SSADVCLWQGITCNN-SSRVVSIDLSGKNISGKIS----SAIFRLPYIQTI 98 (968)
T ss_pred CHHHHHHHHHHHHhCCCCcccCCCCC---CCCCCCcCcceecCC-CCcEEEEEecCCCccccCC----hHHhCCCCCCEE
Confidence 56899999999999988888889997 467899999999974 5799999999999988763 236777888888
Q ss_pred ecCCCcCCCCCchhHhhc-CCCCCCEEEccCCCCCCCCCCccccccccCcccEEEcCCCCCCCCCchhhhhhccCCccEE
Q 002556 143 DLSCVNLTKSSDWFQVVA-NLHYLKSLVLRSCALPPINPSFIWHFNLSTSIETLDLFDNNLPSSSVYPWFLNLSRNILHL 221 (908)
Q Consensus 143 ~Ls~n~l~~~~~~~~~l~-~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~~L~~LdLs~n~l~~~~~p~~~~~l~~~L~~L 221 (908)
+|++|++.+. +|..+. ++++|++|+|++|.+++.+| . ..+ ++|++|++++|.+.+ .+|..+..+. +|++|
T Consensus 99 ~Ls~n~~~~~--ip~~~~~~l~~L~~L~Ls~n~l~~~~p--~--~~l-~~L~~L~Ls~n~~~~-~~p~~~~~l~-~L~~L 169 (968)
T PLN00113 99 NLSNNQLSGP--IPDDIFTTSSSLRYLNLSNNNFTGSIP--R--GSI-PNLETLDLSNNMLSG-EIPNDIGSFS-SLKVL 169 (968)
T ss_pred ECCCCccCCc--CChHHhccCCCCCEEECcCCccccccC--c--ccc-CCCCEEECcCCcccc-cCChHHhcCC-CCCEE
Confidence 8888877652 444443 77777777777777776665 1 234 667777777776665 6666666666 66777
Q ss_pred EcccccCCCCccHhhhcCCCCcEEEccCCcCCCCccccccCCCCCCEEEccCCCCccchhhHHhhccCCCCCCCcCEEEc
Q 002556 222 NLASNSLQGPIPEAFQHMVSLRFLALSSNELEGGIPKFFGNMCSLNELYLLNNKLSGQLSEFIQNLSSGCTVNSLEGLCL 301 (908)
Q Consensus 222 ~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~l~~L~~L~L 301 (908)
++++|.+.+.+|..++++++|++|+|++|.+++.+|..++++++|++|++++|.+++.+|..++.++ +|++|++
T Consensus 170 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~------~L~~L~L 243 (968)
T PLN00113 170 DLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLT------SLNHLDL 243 (968)
T ss_pred ECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCC------CCCEEEC
Confidence 7766666666666666666666666666666666666666666666666666666666666666555 6666666
Q ss_pred cCCcCccCCCC-CCCCCCCcEEEccCccCCCccccccccCCCCCEEECCCCcccCccChhhhcCCCCCCEEECCCCCCcc
Q 002556 302 YDNDITGPIPD-LGGFSSLKELYLGENSLNGTINKSLNHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLYLANNPLTM 380 (908)
Q Consensus 302 ~~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~ 380 (908)
++|.+++.+|. ++++++|++|++++|.+++.+|..+.++++|++|++++|.+.+.+|. .+.++++|++|++++|.+.
T Consensus 244 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~~L~l~~n~~~- 321 (968)
T PLN00113 244 VYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPE-LVIQLQNLEILHLFSNNFT- 321 (968)
T ss_pred cCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCCh-hHcCCCCCcEEECCCCccC-
Confidence 66666555554 55555666666666555555555555555555555555555555544 3445555555555554444
Q ss_pred ccCCCcCCCCCccEEEccCCCCCCChhHHhhcCccccEeeecCccccCCcchhhhhhhhhhHHhccccccccCCCCCccc
Q 002556 381 KLSHDWVPPFQLKWLSLASCKMGPNFPKWLRTQSQLILLDISNTGISGTVPDWFWDLSVELFFLNLSNNHIKGKLPDLSF 460 (908)
Q Consensus 381 ~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~~~ 460 (908)
+..|.++..+++|+.|++++|.+.+.+|..+...
T Consensus 322 -----------------------~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~----------------------- 355 (968)
T PLN00113 322 -----------------------GKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKH----------------------- 355 (968)
T ss_pred -----------------------CcCChhHhcCCCCCEEECcCCCCcCcCChHHhCC-----------------------
Confidence 3445555555555555555555554444432211
Q ss_pred cCCCCcEEEeeCCcccCCCCCCCCCCceeecCCCcCCCCcccccccccccceEEEccCCcccCcCCcccccCCCCCEEEC
Q 002556 461 LRSDDIVVDISSNHFTGQIPPLPSNSTFLNLSKNKFSGSITFLCSIIENTWNIFDLSSNLLSGELPDCWLNFNSLFILNL 540 (908)
Q Consensus 461 ~~~~l~~l~ls~n~l~g~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 540 (908)
++|+.|++++|++++.+|..+..+++|+.|++
T Consensus 356 ------------------------------------------------~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l 387 (968)
T PLN00113 356 ------------------------------------------------NNLTVLDLSTNNLTGEIPEGLCSSGNLFKLIL 387 (968)
T ss_pred ------------------------------------------------CCCcEEECCCCeeEeeCChhHhCcCCCCEEEC
Confidence 34556666666666666666777777778888
Q ss_pred CCCcCcccCCCCcCCCCCccEEEccCccccccCCcCccCCCCCcEEEccCCcccccCchhhhhcccccceeecCCCcccc
Q 002556 541 ANNSFSGKIPDSMGFLHNIRTLSLNNNRLTRELPSSLKNCSQLRVLDLRNNALFGEIPIWIGGNLQNLIVLSLKSNNFHG 620 (908)
Q Consensus 541 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~ 620 (908)
++|.+.+.+|..+..+++|+.|++++|++++.+|..+..+++|+.|++++|++++.+|..+. .+++|++|++++|++.+
T Consensus 388 ~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~n~~~~ 466 (968)
T PLN00113 388 FSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKW-DMPSLQMLSLARNKFFG 466 (968)
T ss_pred cCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhc-cCCCCcEEECcCceeee
Confidence 88887777777777788888888888888877787788888888888888888877777665 57888888888888887
Q ss_pred ccchhhhcCCCCCEEEccCCCCCcCchhhhccccccccccCCCcccccccceeccCCccccccccceeEEeeeccccccc
Q 002556 621 NIPFQLCYLAFIQVLDLSLNNISGKIPKCFSNFSTMIQERSSDPIIGMANRIWVLPGYVYQYRYLDNILLTWKGSEHEYK 700 (908)
Q Consensus 621 ~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 700 (908)
.+|..+ ..++|+.|++++|++++.+|..+.+++.|
T Consensus 467 ~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L-------------------------------------------- 501 (968)
T PLN00113 467 GLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSEL-------------------------------------------- 501 (968)
T ss_pred ecCccc-ccccceEEECcCCccCCccChhhhhhhcc--------------------------------------------
Confidence 777655 35789999999999998888877665544
Q ss_pred cccccccEEEccCCcccccchhhhhccccCceEeccCCcccccCCcccCCCCCCCEEeCCCCcccccCCccccccCCCCe
Q 002556 701 STLGFVKCLDLSSNKLCGPILEEIMDLDGLIALNLSRNNLTGPISPKIGQLKSLDFLDLSRNHFSGSIPSSLVKLCGLGV 780 (908)
Q Consensus 701 ~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~ 780 (908)
+.|+|++|++++.+|+.++++++|++|+|++|.++|.+|..++++++|+.|||++|+++|.+|..+.++++|++
T Consensus 502 ------~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 575 (968)
T PLN00113 502 ------MQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQ 575 (968)
T ss_pred ------CEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCE
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCcCCcccccCCCCccccccccccccCCCCCcCCC
Q 002556 781 LDLSYNNLSGKIPLGTQLQSFNASVYAGNLELCGPP 816 (908)
Q Consensus 781 L~ls~N~l~g~iP~~~~~~~~~~~~~~gn~~lcg~~ 816 (908)
|++++|+++|.+|..+++.+++.+++.||+++||.+
T Consensus 576 l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~ 611 (968)
T PLN00113 576 VNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGD 611 (968)
T ss_pred EeccCCcceeeCCCcchhcccChhhhcCCccccCCc
Confidence 999999999999999999999999999999999864
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.1e-58 Score=580.00 Aligned_cols=514 Identities=33% Similarity=0.455 Sum_probs=448.8
Q ss_pred CCeEEEeecCCCcccchhhhhHHhhcCCCCCcEEecCCCcCCCCCchhHhhcCCCCCCEEEccCCCCCCCCCCccccccc
Q 002556 109 GHVKVLNLRTSDYEFARRKFLKEWLSHLSSLRHLDLSCVNLTKSSDWFQVVANLHYLKSLVLRSCALPPINPSFIWHFNL 188 (908)
Q Consensus 109 ~~v~~l~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l 188 (908)
.+++.|+|+++.+.|.+|. ..+..+++|++|+|++|++++. +| .+.+++|++|+|++|.+.+..| ..+.++
T Consensus 93 ~~L~~L~Ls~n~~~~~ip~---~~~~~l~~L~~L~Ls~n~l~~~--~p--~~~l~~L~~L~Ls~n~~~~~~p--~~~~~l 163 (968)
T PLN00113 93 PYIQTINLSNNQLSGPIPD---DIFTTSSSLRYLNLSNNNFTGS--IP--RGSIPNLETLDLSNNMLSGEIP--NDIGSF 163 (968)
T ss_pred CCCCEEECCCCccCCcCCh---HHhccCCCCCEEECcCCccccc--cC--ccccCCCCEEECcCCcccccCC--hHHhcC
Confidence 3678999999999987754 3356899999999999999873 22 3578999999999999999888 778888
Q ss_pred cCcccEEEcCCCCCCCCCchhhhhhccCCccEEEcccccCCCCccHhhhcCCCCcEEEccCCcCCCCccccccCCCCCCE
Q 002556 189 STSIETLDLFDNNLPSSSVYPWFLNLSRNILHLNLASNSLQGPIPEAFQHMVSLRFLALSSNELEGGIPKFFGNMCSLNE 268 (908)
Q Consensus 189 ~~~L~~LdLs~n~l~~~~~p~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 268 (908)
++|++|++++|.+.+ .+|..+.++. +|++|++++|.+.+.+|..++++++|++|+|++|.+++.+|..++++++|++
T Consensus 164 -~~L~~L~L~~n~l~~-~~p~~~~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 240 (968)
T PLN00113 164 -SSLKVLDLGGNVLVG-KIPNSLTNLT-SLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNH 240 (968)
T ss_pred -CCCCEEECccCcccc-cCChhhhhCc-CCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCE
Confidence 999999999999998 8999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCCccchhhHHhhccCCCCCCCcCEEEccCCcCccCCCC-CCCCCCCcEEEccCccCCCccccccccCCCCCEEE
Q 002556 269 LYLLNNKLSGQLSEFIQNLSSGCTVNSLEGLCLYDNDITGPIPD-LGGFSSLKELYLGENSLNGTINKSLNHLFKLETLS 347 (908)
Q Consensus 269 L~Ls~n~l~~~~~~~l~~l~~~~~l~~L~~L~L~~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 347 (908)
|++++|.+++.+|..+++++ +|++|++++|++.+.+|. +.++++|++|++++|.+.+.+|..+.++++|+.|+
T Consensus 241 L~L~~n~l~~~~p~~l~~l~------~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 314 (968)
T PLN00113 241 LDLVYNNLTGPIPSSLGNLK------NLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILH 314 (968)
T ss_pred EECcCceeccccChhHhCCC------CCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEE
Confidence 99999999999999999998 999999999999998887 99999999999999999999999999999999999
Q ss_pred CCCCcccCccChhhhcCCCCCCEEECCCCCCccccCCCcCCCCCccEEEccCCCCCCChhHHhhcCccccEeeecCcccc
Q 002556 348 LDGNSFTGVISETFFSNMSNLQMLYLANNPLTMKLSHDWVPPFQLKWLSLASCKMGPNFPKWLRTQSQLILLDISNTGIS 427 (908)
Q Consensus 348 L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 427 (908)
+++|.+.+.+|. .+..+++|+.|++++|.+.+. +|.+++.+++|+.|++++|++.
T Consensus 315 l~~n~~~~~~~~-~~~~l~~L~~L~L~~n~l~~~------------------------~p~~l~~~~~L~~L~Ls~n~l~ 369 (968)
T PLN00113 315 LFSNNFTGKIPV-ALTSLPRLQVLQLWSNKFSGE------------------------IPKNLGKHNNLTVLDLSTNNLT 369 (968)
T ss_pred CCCCccCCcCCh-hHhcCCCCCEEECcCCCCcCc------------------------CChHHhCCCCCcEEECCCCeeE
Confidence 999999988887 578888888888888776644 4556667777777777777777
Q ss_pred CCcchhhhhhhhhhHHhccccccccCCCCCccccCCCCcEEEeeCCcccCCCCCCCCCCceeecCCCcCCCCcccccccc
Q 002556 428 GTVPDWFWDLSVELFFLNLSNNHIKGKLPDLSFLRSDDIVVDISSNHFTGQIPPLPSNSTFLNLSKNKFSGSITFLCSII 507 (908)
Q Consensus 428 ~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~l~~l~ls~n~l~g~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~ 507 (908)
+.+|.++...
T Consensus 370 ~~~p~~~~~~---------------------------------------------------------------------- 379 (968)
T PLN00113 370 GEIPEGLCSS---------------------------------------------------------------------- 379 (968)
T ss_pred eeCChhHhCc----------------------------------------------------------------------
Confidence 6666543211
Q ss_pred cccceEEEccCCcccCcCCcccccCCCCCEEECCCCcCcccCCCCcCCCCCccEEEccCccccccCCcCccCCCCCcEEE
Q 002556 508 ENTWNIFDLSSNLLSGELPDCWLNFNSLFILNLANNSFSGKIPDSMGFLHNIRTLSLNNNRLTRELPSSLKNCSQLRVLD 587 (908)
Q Consensus 508 ~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 587 (908)
+.++.|++++|.+.+.+|..+..+++|+.|++++|++++.+|..+..+++|+.|++++|.+++.+|..+..+++|+.|+
T Consensus 380 -~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 458 (968)
T PLN00113 380 -GNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLS 458 (968)
T ss_pred -CCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEE
Confidence 3456667777777777777888888889999999998888888888889999999999999888888888889999999
Q ss_pred ccCCcccccCchhhhhcccccceeecCCCccccccchhhhcCCCCCEEEccCCCCCcCchhhhccccccccccCCCcccc
Q 002556 588 LRNNALFGEIPIWIGGNLQNLIVLSLKSNNFHGNIPFQLCYLAFIQVLDLSLNNISGKIPKCFSNFSTMIQERSSDPIIG 667 (908)
Q Consensus 588 Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~~~~~~~~~~ 667 (908)
+++|++.+.+|..+. .++|+.|++++|++++.+|..+..+++|+.|++++|++++.+|..+.++++|
T Consensus 459 L~~n~~~~~~p~~~~--~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L----------- 525 (968)
T PLN00113 459 LARNKFFGGLPDSFG--SKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKL----------- 525 (968)
T ss_pred CcCceeeeecCcccc--cccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCC-----------
Confidence 999999888887663 6899999999999999999999999999999999999999999887765555
Q ss_pred cccceeccCCccccccccceeEEeeeccccccccccccccEEEccCCcccccchhhhhccccCceEeccCCcccccCCcc
Q 002556 668 MANRIWVLPGYVYQYRYLDNILLTWKGSEHEYKSTLGFVKCLDLSSNKLCGPILEEIMDLDGLIALNLSRNNLTGPISPK 747 (908)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~ 747 (908)
+.|+|++|.++|.+|..++.+++|+.|||++|+++|.+|..
T Consensus 526 ---------------------------------------~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 566 (968)
T PLN00113 526 ---------------------------------------VSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKN 566 (968)
T ss_pred ---------------------------------------CEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChh
Confidence 78999999999999999999999999999999999999999
Q ss_pred cCCCCCCCEEeCCCCcccccCCccccccCCCCeEeCcCCccc
Q 002556 748 IGQLKSLDFLDLSRNHFSGSIPSSLVKLCGLGVLDLSYNNLS 789 (908)
Q Consensus 748 l~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~ls~N~l~ 789 (908)
+.++++|+.|++++|+++|.+|.. +.+..+....+.+|+..
T Consensus 567 l~~l~~L~~l~ls~N~l~~~~p~~-~~~~~~~~~~~~~n~~l 607 (968)
T PLN00113 567 LGNVESLVQVNISHNHLHGSLPST-GAFLAINASAVAGNIDL 607 (968)
T ss_pred HhcCcccCEEeccCCcceeeCCCc-chhcccChhhhcCCccc
Confidence 999999999999999999999965 33344555566777644
No 3
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=4.4e-42 Score=349.45 Aligned_cols=491 Identities=24% Similarity=0.356 Sum_probs=289.2
Q ss_pred CCcEEecCCCcCCCCCchhHhhcCCCCCCEEEccCCCCCCCCCCccccccccCcccEEEcCCCCCCCCCchhhhhhccCC
Q 002556 138 SLRHLDLSCVNLTKSSDWFQVVANLHYLKSLVLRSCALPPINPSFIWHFNLSTSIETLDLFDNNLPSSSVYPWFLNLSRN 217 (908)
Q Consensus 138 ~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~~L~~LdLs~n~l~~~~~p~~~~~l~~~ 217 (908)
.|+.|++++|++.. +.+.+.++..|.+|++++|+++..+| +++.+ ..++.|+.++|+++ .+|+.++.+. +
T Consensus 46 ~l~~lils~N~l~~---l~~dl~nL~~l~vl~~~~n~l~~lp~---aig~l-~~l~~l~vs~n~ls--~lp~~i~s~~-~ 115 (565)
T KOG0472|consen 46 DLQKLILSHNDLEV---LREDLKNLACLTVLNVHDNKLSQLPA---AIGEL-EALKSLNVSHNKLS--ELPEQIGSLI-S 115 (565)
T ss_pred chhhhhhccCchhh---ccHhhhcccceeEEEeccchhhhCCH---HHHHH-HHHHHhhcccchHh--hccHHHhhhh-h
Confidence 45666777777665 34567777777888888877776653 45666 77777888888775 5777777777 7
Q ss_pred ccEEEcccccCCCCccHhhhcCCCCcEEEccCCcCCCCccccccCCCCCCEEEccCCCCccchhhHHhhccCCCCCCCcC
Q 002556 218 ILHLNLASNSLQGPIPEAFQHMVSLRFLALSSNELEGGIPKFFGNMCSLNELYLLNNKLSGQLSEFIQNLSSGCTVNSLE 297 (908)
Q Consensus 218 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~l~~L~ 297 (908)
|++|++++|.+. .+|++++.+..|+.++..+|+++ ..|+.+.++.+|..+++.+|.+....|..+. +. .|+
T Consensus 116 l~~l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~------~L~ 186 (565)
T KOG0472|consen 116 LVKLDCSSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MK------RLK 186 (565)
T ss_pred hhhhhcccccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHH-HH------HHH
Confidence 888888888777 56777778888888888888877 5677777778888888888877766555554 66 778
Q ss_pred EEEccCCcCccCCCCCCCCCCCcEEEccCccCCCccccccccCCCCCEEECCCCcccCccChhhhcCCCCCCEEECCCCC
Q 002556 298 GLCLYDNDITGPIPDLGGFSSLKELYLGENSLNGTINKSLNHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLYLANNP 377 (908)
Q Consensus 298 ~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~ 377 (908)
+||...|.+...+|+++.+.+|+.|++..|++. ..| +|..|..|++|+++.|++. .+|.+...+++++..||+.+|+
T Consensus 187 ~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNk 263 (565)
T KOG0472|consen 187 HLDCNSNLLETLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNK 263 (565)
T ss_pred hcccchhhhhcCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccc
Confidence 888887777766666777888888888888776 444 6777777888888777776 6676666677777777777777
Q ss_pred CccccCCCcCCCCCccEEEccCCCCCCChhHHhhcCccccEeeecCccccCCcchhhhhh-hhhhHHhccccccccCCCC
Q 002556 378 LTMKLSHDWVPPFQLKWLSLASCKMGPNFPKWLRTQSQLILLDISNTGISGTVPDWFWDL-SVELFFLNLSNNHIKGKLP 456 (908)
Q Consensus 378 l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~-~~~L~~L~L~~n~l~~~~p 456 (908)
+. ..|..++-+.+|++||+++|.++ ..|..++++ .|+.|-+.+|.+...--+.+... ..-|++|.= .++..-+
T Consensus 264 lk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs---~~~~dgl 337 (565)
T KOG0472|consen 264 LK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRS---KIKDDGL 337 (565)
T ss_pred cc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHH---hhccCCC
Confidence 76 33444444445555555555554 334445555 55555555554431111100000 001222210 0000000
Q ss_pred CccccCCCCcEEEeeCCcccCCCCCCCCCCceeecCCCcCCCCcccccccccccceEEEccCCcccCcCCcccccCCCCC
Q 002556 457 DLSFLRSDDIVVDISSNHFTGQIPPLPSNSTFLNLSKNKFSGSITFLCSIIENTWNIFDLSSNLLSGELPDCWLNFNSLF 536 (908)
Q Consensus 457 ~~~~~~~~l~~l~ls~n~l~g~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 536 (908)
+.- .| | .-..-+.. . ..........+.+
T Consensus 338 --------------S~s--e~--------------------~-----------~e~~~t~~----~-~~~~~~~~~i~tk 365 (565)
T KOG0472|consen 338 --------------SQS--EG--------------------G-----------TETAMTLP----S-ESFPDIYAIITTK 365 (565)
T ss_pred --------------CCC--cc--------------------c-----------ccccCCCC----C-Ccccchhhhhhhh
Confidence 000 00 0 00000000 0 0001122234455
Q ss_pred EEECCCCcCcccCCCCcCCCCC---ccEEEccCccccccCCcCccCCCCCcE-EEccCCcccccCchhhhhcccccceee
Q 002556 537 ILNLANNSFSGKIPDSMGFLHN---IRTLSLNNNRLTRELPSSLKNCSQLRV-LDLRNNALFGEIPIWIGGNLQNLIVLS 612 (908)
Q Consensus 537 ~L~Ls~N~l~~~~p~~~~~l~~---L~~L~Ls~N~l~~~~p~~l~~l~~L~~-L~Ls~N~l~~~ip~~~~~~l~~L~~L~ 612 (908)
.|+++.-+++ .+|+....-.. ....+++.|++. ++|..+..++.+.+ +++++|.+ +-+|..+. .+++|..|+
T Consensus 366 iL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~i-sfv~~~l~-~l~kLt~L~ 441 (565)
T KOG0472|consen 366 ILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKI-SFVPLELS-QLQKLTFLD 441 (565)
T ss_pred hhcccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCcc-ccchHHHH-hhhcceeee
Confidence 5666665655 33433222222 555666666665 45555555444433 33444443 35555554 466666666
Q ss_pred cCCCccccccchhhhcCCCCCEEEccCCCCCcCchhhhccccccccccCCCcccccccceeccCCccccccccceeEEee
Q 002556 613 LKSNNFHGNIPFQLCYLAFIQVLDLSLNNISGKIPKCFSNFSTMIQERSSDPIIGMANRIWVLPGYVYQYRYLDNILLTW 692 (908)
Q Consensus 613 L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 692 (908)
|++|.+. .+|..++.+..||.||+|.|+|. .+|.++..+..+
T Consensus 442 L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~l------------------------------------ 483 (565)
T KOG0472|consen 442 LSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTL------------------------------------ 483 (565)
T ss_pred cccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHH------------------------------------
Confidence 6666665 56666666666777777777665 556555433322
Q ss_pred eccccccccccccccEEEccCCcccccchhhhhccccCceEeccCCcccccCCcccCCCCCCCEEeCCCCccc
Q 002556 693 KGSEHEYKSTLGFVKCLDLSSNKLCGPILEEIMDLDGLIALNLSRNNLTGPISPKIGQLKSLDFLDLSRNHFS 765 (908)
Q Consensus 693 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~ 765 (908)
+.+-.++|++....|..+.+|.+|+.|||.+|.+. .||+.++++++|+.|++++|.+.
T Consensus 484 --------------Etllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 484 --------------ETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred --------------HHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 33334455665555555666666666666666665 56666666666666666666665
No 4
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=1.5e-39 Score=331.07 Aligned_cols=486 Identities=27% Similarity=0.347 Sum_probs=351.9
Q ss_pred CCCCEEEccCCCCCCCCCCccccccccCcccEEEcCCCCCCCCCchhhhhhccCCccEEEcccccCCCCccHhhhcCCCC
Q 002556 163 HYLKSLVLRSCALPPINPSFIWHFNLSTSIETLDLFDNNLPSSSVYPWFLNLSRNILHLNLASNSLQGPIPEAFQHMVSL 242 (908)
Q Consensus 163 ~~L~~L~Ls~n~l~~~~~~~~~l~~l~~~L~~LdLs~n~l~~~~~p~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L 242 (908)
..|+.+.+++|.+....+ .+.++ ..|.+|++.+|++. ..|++++.+. .++.|+.++|+++ .+|+.++.+.+|
T Consensus 45 v~l~~lils~N~l~~l~~---dl~nL-~~l~vl~~~~n~l~--~lp~aig~l~-~l~~l~vs~n~ls-~lp~~i~s~~~l 116 (565)
T KOG0472|consen 45 VDLQKLILSHNDLEVLRE---DLKNL-ACLTVLNVHDNKLS--QLPAAIGELE-ALKSLNVSHNKLS-ELPEQIGSLISL 116 (565)
T ss_pred cchhhhhhccCchhhccH---hhhcc-cceeEEEeccchhh--hCCHHHHHHH-HHHHhhcccchHh-hccHHHhhhhhh
Confidence 357888999998877664 45667 88999999999986 5899999999 9999999999998 789999999999
Q ss_pred cEEEccCCcCCCCccccccCCCCCCEEEccCCCCccchhhHHhhccCCCCCCCcCEEEccCCcCccCCCCCCCCCCCcEE
Q 002556 243 RFLALSSNELEGGIPKFFGNMCSLNELYLLNNKLSGQLSEFIQNLSSGCTVNSLEGLCLYDNDITGPIPDLGGFSSLKEL 322 (908)
Q Consensus 243 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~l~~L~~L~L~~n~l~~~~~~l~~l~~L~~L 322 (908)
+.|+.++|.+. .+|+.++.+..|+.++..+|+++ ..|+.+..+. +|..+++.+|++...+|..-+++.|++|
T Consensus 117 ~~l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~------~l~~l~~~~n~l~~l~~~~i~m~~L~~l 188 (565)
T KOG0472|consen 117 VKLDCSSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLS------KLSKLDLEGNKLKALPENHIAMKRLKHL 188 (565)
T ss_pred hhhhcccccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHH------HHHHhhccccchhhCCHHHHHHHHHHhc
Confidence 99999999998 67888999999999999999987 4566677777 8999999999999888874458999999
Q ss_pred EccCccCCCccccccccCCCCCEEECCCCcccCccChhhhcCCCCCCEEECCCCCCccccCCCcCCCCCccEEEccCCCC
Q 002556 323 YLGENSLNGTINKSLNHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLYLANNPLTMKLSHDWVPPFQLKWLSLASCKM 402 (908)
Q Consensus 323 ~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l 402 (908)
|...|-++ .+|..++.+.+|+.|+|..|++. ..|+ |..+..|++|+++.|.+.....+....+.++..||+.+|++
T Consensus 189 d~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lPe--f~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNkl 264 (565)
T KOG0472|consen 189 DCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLPE--FPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKL 264 (565)
T ss_pred ccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCCC--CCccHHHHHHHhcccHHHhhHHHHhcccccceeeecccccc
Confidence 99998886 78888999999999999999988 6674 88889999999998888754434344444555555555544
Q ss_pred CCChhHHhhcCccccEeeecCccccCCcchhhhhhhhhhHHhccccccccCCCCCccccCCCCcEEEeeCCcccCCCCCC
Q 002556 403 GPNFPKWLRTQSQLILLDISNTGISGTVPDWFWDLSVELFFLNLSNNHIKGKLPDLSFLRSDDIVVDISSNHFTGQIPPL 482 (908)
Q Consensus 403 ~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~l~~l~ls~n~l~g~~p~~ 482 (908)
. +.|+.+.-+.+|++||+|+|.|+ .+|..++++ .|++|.+.+|.+.
T Consensus 265 k-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl--hL~~L~leGNPlr------------------------------ 310 (565)
T KOG0472|consen 265 K-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL--HLKFLALEGNPLR------------------------------ 310 (565)
T ss_pred c-cCchHHHHhhhhhhhcccCCccc-cCCcccccc--eeeehhhcCCchH------------------------------
Confidence 4 34444444444444444444444 223222222 2222222222221
Q ss_pred CCCCceeecCCCcCCCCcccccccccccceEEEccCCcccCcCCcccccCCC-CCEEECCCCc---------CcccCCCC
Q 002556 483 PSNSTFLNLSKNKFSGSITFLCSIIENTWNIFDLSSNLLSGELPDCWLNFNS-LFILNLANNS---------FSGKIPDS 552 (908)
Q Consensus 483 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~-L~~L~Ls~N~---------l~~~~p~~ 552 (908)
.+... + +.+--...+..+.+ .+.=-++.-+ ..+..| .
T Consensus 311 -------------------TiRr~---------i----i~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~-~ 357 (565)
T KOG0472|consen 311 -------------------TIRRE---------I----ISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFP-D 357 (565)
T ss_pred -------------------HHHHH---------H----HcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCccc-c
Confidence 00000 0 00000000000000 0000011100 001111 1
Q ss_pred cCCCCCccEEEccCccccccCCcCccCCCC---CcEEEccCCcccccCchhhhhcccccce-eecCCCccccccchhhhc
Q 002556 553 MGFLHNIRTLSLNNNRLTRELPSSLKNCSQ---LRVLDLRNNALFGEIPIWIGGNLQNLIV-LSLKSNNFHGNIPFQLCY 628 (908)
Q Consensus 553 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~---L~~L~Ls~N~l~~~ip~~~~~~l~~L~~-L~L~~N~l~~~~p~~l~~ 628 (908)
...+.+.+.|++++=+++ .+|++...... ....+++.|++. ++|..+. .+..+.. +++++|.++ .+|..++.
T Consensus 358 ~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~-~lkelvT~l~lsnn~is-fv~~~l~~ 433 (565)
T KOG0472|consen 358 IYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLV-ELKELVTDLVLSNNKIS-FVPLELSQ 433 (565)
T ss_pred hhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhH-HHHHHHHHHHhhcCccc-cchHHHHh
Confidence 234567899999999998 57765544333 789999999997 8998876 4555544 555555554 88999999
Q ss_pred CCCCCEEEccCCCCCcCchhhhccccccccccCCCcccccccceeccCCccccccccceeEEeeeccccccccccccccE
Q 002556 629 LAFIQVLDLSLNNISGKIPKCFSNFSTMIQERSSDPIIGMANRIWVLPGYVYQYRYLDNILLTWKGSEHEYKSTLGFVKC 708 (908)
Q Consensus 629 l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ 708 (908)
+++|..|+|++|-+. .+|..++.+..| +.
T Consensus 434 l~kLt~L~L~NN~Ln-~LP~e~~~lv~L--------------------------------------------------q~ 462 (565)
T KOG0472|consen 434 LQKLTFLDLSNNLLN-DLPEEMGSLVRL--------------------------------------------------QT 462 (565)
T ss_pred hhcceeeecccchhh-hcchhhhhhhhh--------------------------------------------------he
Confidence 999999999999887 788777665444 89
Q ss_pred EEccCCcccccchhhhhccccCceEeccCCcccccCCcccCCCCCCCEEeCCCCcccccCCccccccCCCCeEeCcCCcc
Q 002556 709 LDLSSNKLCGPILEEIMDLDGLIALNLSRNNLTGPISPKIGQLKSLDFLDLSRNHFSGSIPSSLVKLCGLGVLDLSYNNL 788 (908)
Q Consensus 709 L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~ls~N~l 788 (908)
||+|.|++. .+|+.+..+..|+.+-.++|++....|..+.++.+|..|||.+|.+. .||..++++++|++|++++|+|
T Consensus 463 LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpf 540 (565)
T KOG0472|consen 463 LNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPF 540 (565)
T ss_pred ecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCcc
Confidence 999999998 78999999999999989999999777777999999999999999998 7999999999999999999999
Q ss_pred cccCCC
Q 002556 789 SGKIPL 794 (908)
Q Consensus 789 ~g~iP~ 794 (908)
. .|.
T Consensus 541 r--~Pr 544 (565)
T KOG0472|consen 541 R--QPR 544 (565)
T ss_pred C--CCH
Confidence 8 454
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=9e-37 Score=323.85 Aligned_cols=367 Identities=24% Similarity=0.251 Sum_probs=286.8
Q ss_pred cCCccEEEcccccCCCCccHhhhcCCCCcEEEccCCcCCCCccccccCCCCCCEEEccCCCCccchhhHHhhccCCCCCC
Q 002556 215 SRNILHLNLASNSLQGPIPEAFQHMVSLRFLALSSNELEGGIPKFFGNMCSLNELYLLNNKLSGQLSEFIQNLSSGCTVN 294 (908)
Q Consensus 215 ~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~l~ 294 (908)
++.-+.||+++|.++...+..|.++++|+++++..|.++ .+|...+...+|+.|+|.+|.++..-.+.+..++
T Consensus 77 p~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~------ 149 (873)
T KOG4194|consen 77 PSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALP------ 149 (873)
T ss_pred ccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHh------
Confidence 335677888888888888888889999999999999888 6787666777799999999998888888888888
Q ss_pred CcCEEEccCCcCccCCCC-CCCCCCCcEEEccCccCCCccccccccCCCCCEEECCCCcccCccChhhhcCCCCCCEEEC
Q 002556 295 SLEGLCLYDNDITGPIPD-LGGFSSLKELYLGENSLNGTINKSLNHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLYL 373 (908)
Q Consensus 295 ~L~~L~L~~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L 373 (908)
.|+.|||+.|.++..... +..-.++++|+|++|.|+......|..+.+|..|.|+.|+++ .+|...|.++++|+.|+|
T Consensus 150 alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdL 228 (873)
T KOG4194|consen 150 ALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDL 228 (873)
T ss_pred hhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccc-ccCHHHhhhcchhhhhhc
Confidence 899999999998865543 777788999999999998887888888889999999999998 677767888999999999
Q ss_pred CCCCCccccCCCcCCCCCccEEEccCCCCCCChhHHhhcCccccEeeecCccccCCcchhhhhhhhhhHHhccccccccC
Q 002556 374 ANNPLTMKLSHDWVPPFQLKWLSLASCKMGPNFPKWLRTQSQLILLDISNTGISGTVPDWFWDLSVELFFLNLSNNHIKG 453 (908)
Q Consensus 374 ~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~ 453 (908)
..|.+....-..|.++++|+.|.+..|.+.......|..+.++++|+|+.|++...-..|++++. .|+.|+++.|.+..
T Consensus 229 nrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt-~L~~L~lS~NaI~r 307 (873)
T KOG4194|consen 229 NRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLT-SLEQLDLSYNAIQR 307 (873)
T ss_pred cccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccc-hhhhhccchhhhhe
Confidence 99998876667788899999999999998877777888899999999999999888788888764 88888888888773
Q ss_pred CCCC-ccccCCCCcEEEeeCCcccCCCCCCCCCCceeecCCCcCCCCcccccccccccceEEEccCCcccCcCCcccccC
Q 002556 454 KLPD-LSFLRSDDIVVDISSNHFTGQIPPLPSNSTFLNLSKNKFSGSITFLCSIIENTWNIFDLSSNLLSGELPDCWLNF 532 (908)
Q Consensus 454 ~~p~-~~~~~~~l~~l~ls~n~l~g~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l 532 (908)
.-++ +.+. ++|++|||++|+++...+..|..+
T Consensus 308 ih~d~Wsft-----------------------------------------------qkL~~LdLs~N~i~~l~~~sf~~L 340 (873)
T KOG4194|consen 308 IHIDSWSFT-----------------------------------------------QKLKELDLSSNRITRLDEGSFRVL 340 (873)
T ss_pred eecchhhhc-----------------------------------------------ccceeEeccccccccCChhHHHHH
Confidence 3222 1111 566777777777776666777777
Q ss_pred CCCCEEECCCCcCcccCCCCcCCCCCccEEEccCccccccCCc---CccCCCCCcEEEccCCcccccCchhhhhcccccc
Q 002556 533 NSLFILNLANNSFSGKIPDSMGFLHNIRTLSLNNNRLTRELPS---SLKNCSQLRVLDLRNNALFGEIPIWIGGNLQNLI 609 (908)
Q Consensus 533 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~---~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~ 609 (908)
..|++|+|++|.++..-...|..+++|+.|||++|.++..+.+ .|..+++|+.|++.+|++. .||.--+..++.|+
T Consensus 341 ~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk-~I~krAfsgl~~LE 419 (873)
T KOG4194|consen 341 SQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLK-SIPKRAFSGLEALE 419 (873)
T ss_pred HHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceee-ecchhhhccCcccc
Confidence 7777777777777755555677777777777777777755543 4666777777777777775 56655444677777
Q ss_pred eeecCCCccccccchhhhcCCCCCEEEccC
Q 002556 610 VLSLKSNNFHGNIPFQLCYLAFIQVLDLSL 639 (908)
Q Consensus 610 ~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~ 639 (908)
+|||.+|.|...-|.+|..+ .|+.|-+..
T Consensus 420 ~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 420 HLDLGDNAIASIQPNAFEPM-ELKELVMNS 448 (873)
T ss_pred eecCCCCcceeecccccccc-hhhhhhhcc
Confidence 77777777776667777666 666665543
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=2.1e-36 Score=321.11 Aligned_cols=384 Identities=24% Similarity=0.215 Sum_probs=268.5
Q ss_pred CCEEEccCCCCccchhhHHhhccCCCCCCCcCEEEccCCcCccCCCCCC-CCCCCcEEEccCccCCCccccccccCCCCC
Q 002556 266 LNELYLLNNKLSGQLSEFIQNLSSGCTVNSLEGLCLYDNDITGPIPDLG-GFSSLKELYLGENSLNGTINKSLNHLFKLE 344 (908)
Q Consensus 266 L~~L~Ls~n~l~~~~~~~l~~l~~~~~l~~L~~L~L~~n~l~~~~~~l~-~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~ 344 (908)
-+.|++++|+++...+..|.+++ +|+.+++..|.++ .+|.++ ...+|+.|+|.+|.|+..-.+.+..++.|+
T Consensus 80 t~~LdlsnNkl~~id~~~f~nl~------nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alr 152 (873)
T KOG4194|consen 80 TQTLDLSNNKLSHIDFEFFYNLP------NLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALR 152 (873)
T ss_pred eeeeeccccccccCcHHHHhcCC------cceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhh
Confidence 45577777777766677777777 7777777777776 455544 445699999999999888888899999999
Q ss_pred EEECCCCcccCccChhhhcCCCCCCEEECCCCCCccccCCCcCCCCCccEEEccCCCCCCChhHHhhcCccccEeeecCc
Q 002556 345 TLSLDGNSFTGVISETFFSNMSNLQMLYLANNPLTMKLSHDWVPPFQLKWLSLASCKMGPNFPKWLRTQSQLILLDISNT 424 (908)
Q Consensus 345 ~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n 424 (908)
.|||+.|.++ .+|...|..-.++++|+|++|.|+......|..+.+|..|.|+.|.++...+..|.++++|+.|+|..|
T Consensus 153 slDLSrN~is-~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN 231 (873)
T KOG4194|consen 153 SLDLSRNLIS-EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRN 231 (873)
T ss_pred hhhhhhchhh-cccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhcccc
Confidence 9999999988 566656777788999999999998888788877777777777777777666667777777777777777
Q ss_pred cccCCcchhhhhhhhhhHHhccccccccCCCCCccccCCCCcEEEeeCCcccCCCCCCCCCCceeecCCCcCCCCccccc
Q 002556 425 GISGTVPDWFWDLSVELFFLNLSNNHIKGKLPDLSFLRSDDIVVDISSNHFTGQIPPLPSNSTFLNLSKNKFSGSITFLC 504 (908)
Q Consensus 425 ~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~l~~l~ls~n~l~g~~p~~~~~L~~L~l~~n~l~~~~~~~~ 504 (908)
+|...--..|.+ +
T Consensus 232 ~irive~ltFqg-L------------------------------------------------------------------ 244 (873)
T KOG4194|consen 232 RIRIVEGLTFQG-L------------------------------------------------------------------ 244 (873)
T ss_pred ceeeehhhhhcC-c------------------------------------------------------------------
Confidence 665211111111 1
Q ss_pred ccccccceEEEccCCcccCcCCcccccCCCCCEEECCCCcCcccCCCCcCCCCCccEEEccCccccccCCcCccCCCCCc
Q 002556 505 SIIENTWNIFDLSSNLLSGELPDCWLNFNSLFILNLANNSFSGKIPDSMGFLHNIRTLSLNNNRLTRELPSSLKNCSQLR 584 (908)
Q Consensus 505 ~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 584 (908)
++|+.|.+..|.+...-...|-.+.++++|+|+.|+++..-..++.++++|+.|++++|.|...-++.+..+++|+
T Consensus 245 ----~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~ 320 (873)
T KOG4194|consen 245 ----PSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLK 320 (873)
T ss_pred ----hhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccce
Confidence 3344444444444444445666777788888888888766666777788888888888888777777777778888
Q ss_pred EEEccCCcccccCchhhhhcccccceeecCCCccccccchhhhcCCCCCEEEccCCCCCcCchhhhccccccccccCCCc
Q 002556 585 VLDLRNNALFGEIPIWIGGNLQNLIVLSLKSNNFHGNIPFQLCYLAFIQVLDLSLNNISGKIPKCFSNFSTMIQERSSDP 664 (908)
Q Consensus 585 ~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~~~~~~~ 664 (908)
+|||++|+|+.--+..+. .+..|++|+|++|.+...-...|..+++|++|||++|.+++.|.+.
T Consensus 321 ~LdLs~N~i~~l~~~sf~-~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDa--------------- 384 (873)
T KOG4194|consen 321 ELDLSSNRITRLDEGSFR-VLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDA--------------- 384 (873)
T ss_pred eEeccccccccCChhHHH-HHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecc---------------
Confidence 888888888733334443 5777777777777776544456666777777777777776433321
Q ss_pred ccccccceeccCCccccccccceeEEeeeccccccccccccccEEEccCCcccccchhhhhccccCceEeccCCcccccC
Q 002556 665 IIGMANRIWVLPGYVYQYRYLDNILLTWKGSEHEYKSTLGFVKCLDLSSNKLCGPILEEIMDLDGLIALNLSRNNLTGPI 744 (908)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~i 744 (908)
...|..|++|+.|+|.+|++....
T Consensus 385 --------------------------------------------------------a~~f~gl~~LrkL~l~gNqlk~I~ 408 (873)
T KOG4194|consen 385 --------------------------------------------------------AVAFNGLPSLRKLRLTGNQLKSIP 408 (873)
T ss_pred --------------------------------------------------------hhhhccchhhhheeecCceeeecc
Confidence 123445666666777777776444
Q ss_pred CcccCCCCCCCEEeCCCCcccccCCccccccCCCCeEeCcCCcccccCCCCcccccc
Q 002556 745 SPKIGQLKSLDFLDLSRNHFSGSIPSSLVKLCGLGVLDLSYNNLSGKIPLGTQLQSF 801 (908)
Q Consensus 745 p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~ls~N~l~g~iP~~~~~~~~ 801 (908)
..+|.++.+||.|||.+|.+..+-|.+|..+ .|+.|-+..-.+-|.|...|..+|+
T Consensus 409 krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDCql~Wl~qWl 464 (873)
T KOG4194|consen 409 KRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLCDCQLKWLAQWL 464 (873)
T ss_pred hhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccceEEeccHHHHHHHH
Confidence 4567777777777777777777777777777 7777777777777777666555554
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=100.00 E-value=4.6e-36 Score=335.49 Aligned_cols=481 Identities=28% Similarity=0.347 Sum_probs=341.4
Q ss_pred EecCCCcCCCCCchhHhhcCCCCCCEEEccCCCCCCCCCCccccccccCcccEEEcCCCCCCCCCchhhhhhccCCccEE
Q 002556 142 LDLSCVNLTKSSDWFQVVANLHYLKSLVLRSCALPPINPSFIWHFNLSTSIETLDLFDNNLPSSSVYPWFLNLSRNILHL 221 (908)
Q Consensus 142 L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~~L~~LdLs~n~l~~~~~p~~~~~l~~~L~~L 221 (908)
+|++.+.++. +|..+-.-..++.|+++.|.+...+- ..+... -+|+.||+++|.+. ..|..+..+. +|+.|
T Consensus 3 vd~s~~~l~~---ip~~i~~~~~~~~ln~~~N~~l~~pl--~~~~~~-v~L~~l~lsnn~~~--~fp~~it~l~-~L~~l 73 (1081)
T KOG0618|consen 3 VDASDEQLEL---IPEQILNNEALQILNLRRNSLLSRPL--EFVEKR-VKLKSLDLSNNQIS--SFPIQITLLS-HLRQL 73 (1081)
T ss_pred cccccccCcc---cchhhccHHHHHhhhccccccccCch--HHhhhe-eeeEEeeccccccc--cCCchhhhHH-HHhhc
Confidence 4455555544 34555544557777777776655442 333333 45888888888875 4677777777 88999
Q ss_pred EcccccCCCCccHhhhcCCCCcEEEccCCcCCCCccccccCCCCCCEEEccCCCCccchhhHHhhccCCCCCCCcCEEEc
Q 002556 222 NLASNSLQGPIPEAFQHMVSLRFLALSSNELEGGIPKFFGNMCSLNELYLLNNKLSGQLSEFIQNLSSGCTVNSLEGLCL 301 (908)
Q Consensus 222 ~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~l~~L~~L~L 301 (908)
+++.|.+. ..|.+..++.+|++|.|..|.+. ..|..+..+++|++|+++.|.+. .+|..+..++ .++.+..
T Consensus 74 n~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt------~~~~~~~ 144 (1081)
T KOG0618|consen 74 NLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIEVLT------AEEELAA 144 (1081)
T ss_pred ccchhhHh-hCchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccchhccC-CCchhHHhhh------HHHHHhh
Confidence 99988887 66788888999999999988887 77888889999999999998875 6677777777 7888888
Q ss_pred cCCcCccCCCCCCCCCCCcEEEccCccCCCccccccccCCCCCEEECCCCcccCccChhhhcCCCCCCEEECCCCCCccc
Q 002556 302 YDNDITGPIPDLGGFSSLKELYLGENSLNGTINKSLNHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLYLANNPLTMK 381 (908)
Q Consensus 302 ~~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~ 381 (908)
++|..... ++... ++.+++..|.+.+.++.++..++. .|+|++|.+. .. .+.++.+|+.+....|.+...
T Consensus 145 s~N~~~~~---lg~~~-ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~~---dls~~~~l~~l~c~rn~ls~l 214 (1081)
T KOG0618|consen 145 SNNEKIQR---LGQTS-IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-VL---DLSNLANLEVLHCERNQLSEL 214 (1081)
T ss_pred hcchhhhh---hcccc-chhhhhhhhhcccchhcchhhhhe--eeecccchhh-hh---hhhhccchhhhhhhhcccceE
Confidence 88832222 22222 788888888888888887777766 7888888876 22 356777777777777665421
Q ss_pred cCCCcCCCCCccEEEccCCCCCCChhHHhhcCccccEeeecCccccCCcchhhhhhhhhhHHhccccccccCCCCCcccc
Q 002556 382 LSHDWVPPFQLKWLSLASCKMGPNFPKWLRTQSQLILLDISNTGISGTVPDWFWDLSVELFFLNLSNNHIKGKLPDLSFL 461 (908)
Q Consensus 382 ~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~ 461 (908)
. + .-++|+.|+.++|.++. ..+.
T Consensus 215 ~--------------~--------------~g~~l~~L~a~~n~l~~-------------------------~~~~---- 237 (1081)
T KOG0618|consen 215 E--------------I--------------SGPSLTALYADHNPLTT-------------------------LDVH---- 237 (1081)
T ss_pred E--------------e--------------cCcchheeeeccCccee-------------------------eccc----
Confidence 1 0 11233333333333321 1000
Q ss_pred CCCCcEEEeeCCcccCCCCCCCCCCceeecCCCcCCCCcccccccccccceEEEccCCcccCcCCcccccCCCCCEEECC
Q 002556 462 RSDDIVVDISSNHFTGQIPPLPSNSTFLNLSKNKFSGSITFLCSIIENTWNIFDLSSNLLSGELPDCWLNFNSLFILNLA 541 (908)
Q Consensus 462 ~~~l~~l~ls~n~l~g~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls 541 (908)
..+.+++++++++|++++....++.. .+|+.++..+|.++ .+|..+....+|+.|.+.
T Consensus 238 -------------------p~p~nl~~~dis~n~l~~lp~wi~~~--~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~ 295 (1081)
T KOG0618|consen 238 -------------------PVPLNLQYLDISHNNLSNLPEWIGAC--ANLEALNANHNRLV-ALPLRISRITSLVSLSAA 295 (1081)
T ss_pred -------------------cccccceeeecchhhhhcchHHHHhc--ccceEecccchhHH-hhHHHHhhhhhHHHHHhh
Confidence 11334455555555554444223322 77888888888885 677777788888889999
Q ss_pred CCcCcccCCCCcCCCCCccEEEccCccccccCCc-CccCCC-CCcEEEccCCcccccCchhhhhcccccceeecCCCccc
Q 002556 542 NNSFSGKIPDSMGFLHNIRTLSLNNNRLTRELPS-SLKNCS-QLRVLDLRNNALFGEIPIWIGGNLQNLIVLSLKSNNFH 619 (908)
Q Consensus 542 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~l~~l~-~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~ 619 (908)
+|.+. .+|....+++.|++|+|..|++. .+|+ .+.-.. +|+.|+.+.|++. ..|..-....+.|+.|++.+|.++
T Consensus 296 ~nel~-yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~-~lp~~~e~~~~~Lq~LylanN~Lt 372 (1081)
T KOG0618|consen 296 YNELE-YIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLS-TLPSYEENNHAALQELYLANNHLT 372 (1081)
T ss_pred hhhhh-hCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhcccc-ccccccchhhHHHHHHHHhcCccc
Confidence 99888 66777788888999999999887 4554 333333 3777888888876 455333335778999999999999
Q ss_pred cccchhhhcCCCCCEEEccCCCCCcCchh-hhccccccccccCCCcccccccceeccCCccccccccceeEEeeeccccc
Q 002556 620 GNIPFQLCYLAFIQVLDLSLNNISGKIPK-CFSNFSTMIQERSSDPIIGMANRIWVLPGYVYQYRYLDNILLTWKGSEHE 698 (908)
Q Consensus 620 ~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~-~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 698 (908)
...-+.+.+.+.|++|+|++|++. .+|. .+.++.
T Consensus 373 d~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle-------------------------------------------- 407 (1081)
T KOG0618|consen 373 DSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLE-------------------------------------------- 407 (1081)
T ss_pred ccchhhhccccceeeeeecccccc-cCCHHHHhchH--------------------------------------------
Confidence 887778888999999999999997 5554 344333
Q ss_pred cccccccccEEEccCCcccccchhhhhccccCceEeccCCcccccCCcccCCCCCCCEEeCCCCccccc-CCccccccCC
Q 002556 699 YKSTLGFVKCLDLSSNKLCGPILEEIMDLDGLIALNLSRNNLTGPISPKIGQLKSLDFLDLSRNHFSGS-IPSSLVKLCG 777 (908)
Q Consensus 699 ~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~-ip~~l~~L~~ 777 (908)
.|+.|+||+|+++ .+|.++..+..|++|...+|++. ..| ++.++++|+.+|+|.|+|+.. +|.... -++
T Consensus 408 ------~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p-~p~ 477 (1081)
T KOG0618|consen 408 ------ELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALP-SPN 477 (1081)
T ss_pred ------HhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCC-Ccc
Confidence 3478999999998 67899999999999999999998 566 899999999999999999844 343333 278
Q ss_pred CCeEeCcCCc
Q 002556 778 LGVLDLSYNN 787 (908)
Q Consensus 778 L~~L~ls~N~ 787 (908)
|++||+++|.
T Consensus 478 LkyLdlSGN~ 487 (1081)
T KOG0618|consen 478 LKYLDLSGNT 487 (1081)
T ss_pred cceeeccCCc
Confidence 9999999997
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=100.00 E-value=7e-35 Score=326.02 Aligned_cols=419 Identities=26% Similarity=0.310 Sum_probs=304.6
Q ss_pred CCcEEecCCCcCCCCCchhHhhcCCCCCCEEEccCCCCCCCCCCccccccccCcccEEEcCCCCCCCCCchhhhhhccCC
Q 002556 138 SLRHLDLSCVNLTKSSDWFQVVANLHYLKSLVLRSCALPPINPSFIWHFNLSTSIETLDLFDNNLPSSSVYPWFLNLSRN 217 (908)
Q Consensus 138 ~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~~L~~LdLs~n~l~~~~~p~~~~~l~~~ 217 (908)
.+++|+++.|-+...+ .+.+.+.-+|+.||+++|++...+ ..+..+ ++|+.|.++.|.+. ..|....++. +
T Consensus 22 ~~~~ln~~~N~~l~~p--l~~~~~~v~L~~l~lsnn~~~~fp---~~it~l-~~L~~ln~s~n~i~--~vp~s~~~~~-~ 92 (1081)
T KOG0618|consen 22 ALQILNLRRNSLLSRP--LEFVEKRVKLKSLDLSNNQISSFP---IQITLL-SHLRQLNLSRNYIR--SVPSSCSNMR-N 92 (1081)
T ss_pred HHHhhhccccccccCc--hHHhhheeeeEEeeccccccccCC---chhhhH-HHHhhcccchhhHh--hCchhhhhhh-c
Confidence 3778888888776644 455666666999999999887765 345666 89999999999886 4678888888 9
Q ss_pred ccEEEcccccCCCCccHhhhcCCCCcEEEccCCcCCCCccccccCCCCCCEEEccCCCCccchhhHHhhccCCCCCCCcC
Q 002556 218 ILHLNLASNSLQGPIPEAFQHMVSLRFLALSSNELEGGIPKFFGNMCSLNELYLLNNKLSGQLSEFIQNLSSGCTVNSLE 297 (908)
Q Consensus 218 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~l~~L~ 297 (908)
|++|+|..|.+. ..|..+..+++|++||+|+|++. .+|..+..++.++.+..++|.... .++.. .++
T Consensus 93 l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~----~lg~~-------~ik 159 (1081)
T KOG0618|consen 93 LQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQ----RLGQT-------SIK 159 (1081)
T ss_pred chhheeccchhh-cCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhh----hhccc-------cch
Confidence 999999999887 78999999999999999999998 788889999999999999993221 12222 578
Q ss_pred EEEccCCcCccCCCC-CCCCCCCcEEEccCccCCCccccccccCCCCCEEECCCCcccCccChhhhcCCCCCCEEECCCC
Q 002556 298 GLCLYDNDITGPIPD-LGGFSSLKELYLGENSLNGTINKSLNHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLYLANN 376 (908)
Q Consensus 298 ~L~L~~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n 376 (908)
.+++..|.+.+.++. +..+.. .|+|.+|.+. ...+..+.+|+.|....|++... .-.-++|+.|+.++|
T Consensus 160 ~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~---~~dls~~~~l~~l~c~rn~ls~l-----~~~g~~l~~L~a~~n 229 (1081)
T KOG0618|consen 160 KLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME---VLDLSNLANLEVLHCERNQLSEL-----EISGPSLTALYADHN 229 (1081)
T ss_pred hhhhhhhhcccchhcchhhhhe--eeecccchhh---hhhhhhccchhhhhhhhcccceE-----EecCcchheeeeccC
Confidence 888888888887776 666666 7999999987 24577888999999999988732 234678999999999
Q ss_pred CCccccCCCcCCCCCccEEEccCCCCCCChhHHhhcCccccEeeecCccccCCcchhhhhhhhhhHHhccccccccCCCC
Q 002556 377 PLTMKLSHDWVPPFQLKWLSLASCKMGPNFPKWLRTQSQLILLDISNTGISGTVPDWFWDLSVELFFLNLSNNHIKGKLP 456 (908)
Q Consensus 377 ~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p 456 (908)
.+.... .-.-+.+|++++++.+++. .+|+|+..+.+|+.++..+|+++ .+|..+... .+|+.|.+..|.++-..|
T Consensus 230 ~l~~~~--~~p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~-~~L~~l~~~~nel~yip~ 304 (1081)
T KOG0618|consen 230 PLTTLD--VHPVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRI-TSLVSLSAAYNELEYIPP 304 (1081)
T ss_pred cceeec--cccccccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhh-hhHHHHHhhhhhhhhCCC
Confidence 988322 2233468999999999998 56699999999999999999995 677777665 389999998888873222
Q ss_pred CccccCCCCcEEEeeCCcccCCCCCCCCCCceeecCCCcCCCCcccccccccccceEEEccCCcccCcCCcccccCCC-C
Q 002556 457 DLSFLRSDDIVVDISSNHFTGQIPPLPSNSTFLNLSKNKFSGSITFLCSIIENTWNIFDLSSNLLSGELPDCWLNFNS-L 535 (908)
Q Consensus 457 ~~~~~~~~l~~l~ls~n~l~g~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~-L 535 (908)
.... . +.|++|||..|++....+..+..... |
T Consensus 305 ~le~----------------------~-------------------------~sL~tLdL~~N~L~~lp~~~l~v~~~~l 337 (1081)
T KOG0618|consen 305 FLEG----------------------L-------------------------KSLRTLDLQSNNLPSLPDNFLAVLNASL 337 (1081)
T ss_pred cccc----------------------c-------------------------ceeeeeeehhccccccchHHHhhhhHHH
Confidence 2110 0 44555555555554322222222222 5
Q ss_pred CEEECCCCcCcccCCC-CcCCCCCccEEEccCccccccCCcCccCCCCCcEEEccCCcccccCchhhhhcccccceeecC
Q 002556 536 FILNLANNSFSGKIPD-SMGFLHNIRTLSLNNNRLTRELPSSLKNCSQLRVLDLRNNALFGEIPIWIGGNLQNLIVLSLK 614 (908)
Q Consensus 536 ~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~ 614 (908)
..|+.+.|++. ..|. .=...+.|+.|++.+|.++...-+.+.+.+.|++|+|++|++. .+|+....+++.|++|+|+
T Consensus 338 ~~ln~s~n~l~-~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LS 415 (1081)
T KOG0618|consen 338 NTLNVSSNKLS-TLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLS 415 (1081)
T ss_pred HHHhhhhcccc-ccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc-cCCHHHHhchHHhHHHhcc
Confidence 55566666655 2221 1123556777777777777666566777777777777777774 6776666667777777777
Q ss_pred CCccccccchhhhcCCCCCEEEccCCCCC
Q 002556 615 SNNFHGNIPFQLCYLAFIQVLDLSLNNIS 643 (908)
Q Consensus 615 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 643 (908)
+|+++ .+|..+..+..|++|...+|++.
T Consensus 416 GNkL~-~Lp~tva~~~~L~tL~ahsN~l~ 443 (1081)
T KOG0618|consen 416 GNKLT-TLPDTVANLGRLHTLRAHSNQLL 443 (1081)
T ss_pred cchhh-hhhHHHHhhhhhHHHhhcCCcee
Confidence 77776 56677777777777766666665
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=6.1e-33 Score=295.97 Aligned_cols=366 Identities=25% Similarity=0.327 Sum_probs=281.2
Q ss_pred CcccEEEcCCCCCCCCCchhhhhhccCCccEEEcccccCCCCccHhhhcCCCCcEEEccCCcCCCCccccccCCCCCCEE
Q 002556 190 TSIETLDLFDNNLPSSSVYPWFLNLSRNILHLNLASNSLQGPIPEAFQHMVSLRFLALSSNELEGGIPKFFGNMCSLNEL 269 (908)
Q Consensus 190 ~~L~~LdLs~n~l~~~~~p~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 269 (908)
+-.+-.|+++|.++|..+|..+..++ .++.|.|...++. .+|+.++.+.+|++|.+++|++. .+-..+..++.|+.+
T Consensus 7 pFVrGvDfsgNDFsg~~FP~~v~qMt-~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv 83 (1255)
T KOG0444|consen 7 PFVRGVDFSGNDFSGDRFPHDVEQMT-QMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSV 83 (1255)
T ss_pred ceeecccccCCcCCCCcCchhHHHhh-heeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHH
Confidence 55566778888887667788887777 8888888887776 67888888888888888888877 455667778888888
Q ss_pred EccCCCCc-cchhhHHhhccCCCCCCCcCEEEccCCcCccCCCCCCCCCCCcEEEccCccCCCccccccccCCCCCEEEC
Q 002556 270 YLLNNKLS-GQLSEFIQNLSSGCTVNSLEGLCLYDNDITGPIPDLGGFSSLKELYLGENSLNGTINKSLNHLFKLETLSL 348 (908)
Q Consensus 270 ~Ls~n~l~-~~~~~~l~~l~~~~~l~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L 348 (908)
++.+|++. ..+|..+..+. .|+.|||++|++...+..+..-+++-.|+|++|+|..+...-+.+++.|-.|||
T Consensus 84 ~~R~N~LKnsGiP~diF~l~------dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDL 157 (1255)
T KOG0444|consen 84 IVRDNNLKNSGIPTDIFRLK------DLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDL 157 (1255)
T ss_pred hhhccccccCCCCchhcccc------cceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhcc
Confidence 88888774 34666666666 788888888888755444777788888888888887444445667888888888
Q ss_pred CCCcccCccChhhhcCCCCCCEEECCCCCCccccCCCcCCCCCccEEEccCCCCC-CChhHHhhcCccccEeeecCcccc
Q 002556 349 DGNSFTGVISETFFSNMSNLQMLYLANNPLTMKLSHDWVPPFQLKWLSLASCKMG-PNFPKWLRTQSQLILLDISNTGIS 427 (908)
Q Consensus 349 ~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~Ls~n~l~ 427 (908)
++|++. .+|+ ....+.+|++|+|++|++....-..+..+.+|+.|.+++.+-+ ..+|.++..+.+|..+|+|.|.+.
T Consensus 158 S~NrLe-~LPP-Q~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp 235 (1255)
T KOG0444|consen 158 SNNRLE-MLPP-QIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP 235 (1255)
T ss_pred ccchhh-hcCH-HHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC
Confidence 888887 4454 3677888888888888876555455555666777777765433 457777888888888888888877
Q ss_pred CCcchhhhhhhhhhHHhccccccccCCCCCccccCCCCcEEEeeCCcccCCCCCCCCCCceeecCCCcCCCCcccccccc
Q 002556 428 GTVPDWFWDLSVELFFLNLSNNHIKGKLPDLSFLRSDDIVVDISSNHFTGQIPPLPSNSTFLNLSKNKFSGSITFLCSII 507 (908)
Q Consensus 428 ~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~l~~l~ls~n~l~g~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~ 507 (908)
.+|+.+... ++|+.|+|++|+++ .|.+. ...+
T Consensus 236 -~vPecly~l-~~LrrLNLS~N~it--------------eL~~~-------------------------------~~~W- 267 (1255)
T KOG0444|consen 236 -IVPECLYKL-RNLRRLNLSGNKIT--------------ELNMT-------------------------------EGEW- 267 (1255)
T ss_pred -cchHHHhhh-hhhheeccCcCcee--------------eeecc-------------------------------HHHH-
Confidence 677777665 37777777777766 22211 1111
Q ss_pred cccceEEEccCCcccCcCCcccccCCCCCEEECCCCcCc-ccCCCCcCCCCCccEEEccCccccccCCcCccCCCCCcEE
Q 002556 508 ENTWNIFDLSSNLLSGELPDCWLNFNSLFILNLANNSFS-GKIPDSMGFLHNIRTLSLNNNRLTRELPSSLKNCSQLRVL 586 (908)
Q Consensus 508 ~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 586 (908)
.++++|++|.|+++ .+|++++.+++|+.|.+.+|+++ +-+|..++.+.+|+.+..++|.+. ..|+.+..|..|+.|
T Consensus 268 -~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL 344 (1255)
T KOG0444|consen 268 -ENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKL 344 (1255)
T ss_pred -hhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHh
Confidence 57888889999888 78999999999999999999886 457899999999999999999987 789999999999999
Q ss_pred EccCCcccccCchhhhhcccccceeecCCCccc
Q 002556 587 DLRNNALFGEIPIWIGGNLQNLIVLSLKSNNFH 619 (908)
Q Consensus 587 ~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~ 619 (908)
.|+.|++. .+|+.+- -++.|++||++.|.-.
T Consensus 345 ~L~~NrLi-TLPeaIH-lL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 345 KLDHNRLI-TLPEAIH-LLPDLKVLDLRENPNL 375 (1255)
T ss_pred ccccccee-echhhhh-hcCCcceeeccCCcCc
Confidence 99999997 8999886 6899999999999765
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=1.2e-32 Score=293.69 Aligned_cols=395 Identities=25% Similarity=0.333 Sum_probs=261.3
Q ss_pred CCCCcEEEccCCcCC-CCccccccCCCCCCEEEccCCCCccchhhHHhhccCCCCCCCcCEEEccCCcCccCCCCCCCCC
Q 002556 239 MVSLRFLALSSNELE-GGIPKFFGNMCSLNELYLLNNKLSGQLSEFIQNLSSGCTVNSLEGLCLYDNDITGPIPDLGGFS 317 (908)
Q Consensus 239 l~~L~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~l~~L~~L~L~~n~l~~~~~~l~~l~ 317 (908)
++-.+-.|+++|.++ +..|.....+++++.|.|...++. .+|+.++.+. +|++|.+++|++......+..++
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lq------kLEHLs~~HN~L~~vhGELs~Lp 78 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQ------KLEHLSMAHNQLISVHGELSDLP 78 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHh------hhhhhhhhhhhhHhhhhhhccch
Confidence 444566677777777 456777777777777777776664 5677777776 77777777777665555566666
Q ss_pred CCcEEEccCccCC-CccccccccCCCCCEEECCCCcccCccChhhhcCCCCCCEEECCCCCCccccCCCcCCCCCccEEE
Q 002556 318 SLKELYLGENSLN-GTINKSLNHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLYLANNPLTMKLSHDWVPPFQLKWLS 396 (908)
Q Consensus 318 ~L~~L~Ls~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ 396 (908)
.|+.+.+..|++. .-+|..+..+..|..|||++|++. ..|. .+...+++-.|+|++|+|..
T Consensus 79 ~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~-~LE~AKn~iVLNLS~N~Iet---------------- 140 (1255)
T KOG0444|consen 79 RLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPT-NLEYAKNSIVLNLSYNNIET---------------- 140 (1255)
T ss_pred hhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcch-hhhhhcCcEEEEcccCcccc----------------
Confidence 6777766666653 234555666666666666666665 3443 24444444444444444431
Q ss_pred ccCCCCCCChhHHhhcCccccEeeecCccccCCcchhhhhhhhhhHHhccccccccCCCCCccccCCCCcEEEeeCCccc
Q 002556 397 LASCKMGPNFPKWLRTQSQLILLDISNTGISGTVPDWFWDLSVELFFLNLSNNHIKGKLPDLSFLRSDDIVVDISSNHFT 476 (908)
Q Consensus 397 L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~l~~l~ls~n~l~ 476 (908)
+....+.+++.|-.||||+|++. .+|..+..+
T Consensus 141 --------IPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL--------------------------------------- 172 (1255)
T KOG0444|consen 141 --------IPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRL--------------------------------------- 172 (1255)
T ss_pred --------CCchHHHhhHhHhhhccccchhh-hcCHHHHHH---------------------------------------
Confidence 11112233444444444444443 222222221
Q ss_pred CCCCCCCCCCceeecCCCcCCCCcccccccccccceEEEccCCcccCcCCcccccCCCCCEEECCCCcCc-ccCCCCcCC
Q 002556 477 GQIPPLPSNSTFLNLSKNKFSGSITFLCSIIENTWNIFDLSSNLLSGELPDCWLNFNSLFILNLANNSFS-GKIPDSMGF 555 (908)
Q Consensus 477 g~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~~~p~~~~~ 555 (908)
..|++|+|++|.+.-.--..+..+++|++|.+++.+-+ ..+|.++..
T Consensus 173 --------------------------------~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~ 220 (1255)
T KOG0444|consen 173 --------------------------------SMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDD 220 (1255)
T ss_pred --------------------------------hhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhh
Confidence 23344444444332111122335678888999887543 468888999
Q ss_pred CCCccEEEccCccccccCCcCccCCCCCcEEEccCCcccccCchhhhhcccccceeecCCCccccccchhhhcCCCCCEE
Q 002556 556 LHNIRTLSLNNNRLTRELPSSLKNCSQLRVLDLRNNALFGEIPIWIGGNLQNLIVLSLKSNNFHGNIPFQLCYLAFIQVL 635 (908)
Q Consensus 556 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L 635 (908)
+.+|..+|+|.|.+. .+|+.+.++++|+.|+||+|+|+ ++..... ...+|+.|+|+.|+++ .+|..++.++.|+.|
T Consensus 221 l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~-~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kL 296 (1255)
T KOG0444|consen 221 LHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEG-EWENLETLNLSRNQLT-VLPDAVCKLTKLTKL 296 (1255)
T ss_pred hhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHH-HHhhhhhhccccchhc-cchHHHhhhHHHHHH
Confidence 999999999999997 78999999999999999999997 5655555 4778999999999998 789999999999999
Q ss_pred EccCCCCCc-CchhhhccccccccccCCCcccccccceeccCCccccccccceeEEeeeccccccccccccccEEEccCC
Q 002556 636 DLSLNNISG-KIPKCFSNFSTMIQERSSDPIIGMANRIWVLPGYVYQYRYLDNILLTWKGSEHEYKSTLGFVKCLDLSSN 714 (908)
Q Consensus 636 ~Ls~N~l~g-~ip~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N 714 (908)
.+.+|+++- -||..++.+..| +.+..++|
T Consensus 297 y~n~NkL~FeGiPSGIGKL~~L--------------------------------------------------evf~aanN 326 (1255)
T KOG0444|consen 297 YANNNKLTFEGIPSGIGKLIQL--------------------------------------------------EVFHAANN 326 (1255)
T ss_pred HhccCcccccCCccchhhhhhh--------------------------------------------------HHHHhhcc
Confidence 999998863 366666655444 56777788
Q ss_pred cccccchhhhhccccCceEeccCCcccccCCcccCCCCCCCEEeCCCCcccccCCccccccCCCCeEeCcC---C--ccc
Q 002556 715 KLCGPILEEIMDLDGLIALNLSRNNLTGPISPKIGQLKSLDFLDLSRNHFSGSIPSSLVKLCGLGVLDLSY---N--NLS 789 (908)
Q Consensus 715 ~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~ls~---N--~l~ 789 (908)
.+. ..|+.+..|..|+.|.|++|++. ..|+++.-|+.|++||+..|.----.|.-=..-++|+.-++.. + .+.
T Consensus 327 ~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPPKP~da~~~lefYNIDFSLq~QlrlA 404 (1255)
T KOG0444|consen 327 KLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPPKPNDARKKLEFYNIDFSLQHQLRLA 404 (1255)
T ss_pred ccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCccCCCCcchhhhcceeeecceehhhHHhhc
Confidence 876 78999999999999999999987 6889999999999999999886633332222224565544443 1 345
Q ss_pred ccCCC
Q 002556 790 GKIPL 794 (908)
Q Consensus 790 g~iP~ 794 (908)
|..|.
T Consensus 405 G~~pa 409 (1255)
T KOG0444|consen 405 GQMPA 409 (1255)
T ss_pred cCCcc
Confidence 65553
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.88 E-value=1.1e-21 Score=247.44 Aligned_cols=327 Identities=20% Similarity=0.224 Sum_probs=178.5
Q ss_pred cccccCCCCCCEEEccCCCC------ccchhhHHhhccCCCCCCCcCEEEccCCcCccCCCCCCCCCCCcEEEccCccCC
Q 002556 257 PKFFGNMCSLNELYLLNNKL------SGQLSEFIQNLSSGCTVNSLEGLCLYDNDITGPIPDLGGFSSLKELYLGENSLN 330 (908)
Q Consensus 257 p~~l~~l~~L~~L~Ls~n~l------~~~~~~~l~~l~~~~~l~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~n~l~ 330 (908)
+.+|.++++|+.|.+..+.. ...+|..+..++. +|+.|.+.++.+...+..+ ...+|++|++.+|++.
T Consensus 551 ~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~-----~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~ 624 (1153)
T PLN03210 551 ENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPP-----KLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLE 624 (1153)
T ss_pred HHHHhcCccccEEEEecccccccccceeecCcchhhcCc-----ccEEEEecCCCCCCCCCcC-CccCCcEEECcCcccc
Confidence 34566777777777755432 2234555555442 5777777776665433334 4567777777777765
Q ss_pred CccccccccCCCCCEEECCCCcccCccChhhhcCCCCCCEEECCCCCCccccCCCcCCCCCccEEEccCCCCCCChhHHh
Q 002556 331 GTINKSLNHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLYLANNPLTMKLSHDWVPPFQLKWLSLASCKMGPNFPKWL 410 (908)
Q Consensus 331 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l 410 (908)
.++..+..+++|+.|+|+++...+.+|. ++.+++|++|++++|.....+|..+..+.+|+.|++++|.....+|..+
T Consensus 625 -~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i 701 (1153)
T PLN03210 625 -KLWDGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI 701 (1153)
T ss_pred -ccccccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC
Confidence 4555666677777777776654445553 5666667777666665555555555555555555555554433444332
Q ss_pred hcCccccEeeecCccccCCcchhhhhhhhhhHHhccccccccCCCCCccccCCCCcEEEeeCCcccCCCCCCCCCCceee
Q 002556 411 RTQSQLILLDISNTGISGTVPDWFWDLSVELFFLNLSNNHIKGKLPDLSFLRSDDIVVDISSNHFTGQIPPLPSNSTFLN 490 (908)
Q Consensus 411 ~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~l~~l~ls~n~l~g~~p~~~~~L~~L~ 490 (908)
++++|+.|++++|...+.+|.. ..+|+.|++++|.+. .+|..
T Consensus 702 -~l~sL~~L~Lsgc~~L~~~p~~----~~nL~~L~L~~n~i~-------------------------~lP~~-------- 743 (1153)
T PLN03210 702 -NLKSLYRLNLSGCSRLKSFPDI----STNISWLDLDETAIE-------------------------EFPSN-------- 743 (1153)
T ss_pred -CCCCCCEEeCCCCCCccccccc----cCCcCeeecCCCccc-------------------------ccccc--------
Confidence 4445555555554333222221 112222222222221 11111
Q ss_pred cCCCcCCCCcccccccccccceEEEccCCc-------ccCcCCcccccCCCCCEEECCCCcCcccCCCCcCCCCCccEEE
Q 002556 491 LSKNKFSGSITFLCSIIENTWNIFDLSSNL-------LSGELPDCWLNFNSLFILNLANNSFSGKIPDSMGFLHNIRTLS 563 (908)
Q Consensus 491 l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~-------l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 563 (908)
... ++|+.|++.++. +....+......++|+.|++++|...+.+|..++++++|+.|+
T Consensus 744 -------------~~l--~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~ 808 (1153)
T PLN03210 744 -------------LRL--ENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLE 808 (1153)
T ss_pred -------------ccc--cccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEE
Confidence 000 233333333321 1111122222345677777777766666777777777777777
Q ss_pred ccCccccccCCcCccCCCCCcEEEccCCcccccCchhhhhcccccceeecCCCccccccchhhhcCCCCCEEEccCCCCC
Q 002556 564 LNNNRLTRELPSSLKNCSQLRVLDLRNNALFGEIPIWIGGNLQNLIVLSLKSNNFHGNIPFQLCYLAFIQVLDLSLNNIS 643 (908)
Q Consensus 564 Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 643 (908)
+++|...+.+|..+ ++++|+.|++++|.....+|.. .++|++|+|++|.++ .+|.++..+++|+.|++++|+--
T Consensus 809 Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~----~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L 882 (1153)
T PLN03210 809 IENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI----STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNL 882 (1153)
T ss_pred CCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc----ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCc
Confidence 77765555666555 5677777777776555455532 356777777777776 56777777777777777764333
Q ss_pred cCchhhhc
Q 002556 644 GKIPKCFS 651 (908)
Q Consensus 644 g~ip~~l~ 651 (908)
..+|..+.
T Consensus 883 ~~l~~~~~ 890 (1153)
T PLN03210 883 QRVSLNIS 890 (1153)
T ss_pred CccCcccc
Confidence 24444433
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.87 E-value=3.8e-21 Score=242.47 Aligned_cols=256 Identities=19% Similarity=0.132 Sum_probs=166.1
Q ss_pred HhhcCCCCCCEEEccCCCC------CCCCCCccccccccCcccEEEcCCCCCCCCCchhhhhhccCCccEEEcccccCCC
Q 002556 157 QVVANLHYLKSLVLRSCAL------PPINPSFIWHFNLSTSIETLDLFDNNLPSSSVYPWFLNLSRNILHLNLASNSLQG 230 (908)
Q Consensus 157 ~~l~~l~~L~~L~Ls~n~l------~~~~~~~~~l~~l~~~L~~LdLs~n~l~~~~~p~~~~~l~~~L~~L~Ls~n~l~~ 230 (908)
.++.++++|+.|.+..+.. ....| ..+..++++|+.|++.++.+. .+|..+ ... +|++|++++|.+.
T Consensus 552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp--~~~~~lp~~Lr~L~~~~~~l~--~lP~~f-~~~-~L~~L~L~~s~l~- 624 (1153)
T PLN03210 552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLP--EGFDYLPPKLRLLRWDKYPLR--CMPSNF-RPE-NLVKLQMQGSKLE- 624 (1153)
T ss_pred HHHhcCccccEEEEecccccccccceeecC--cchhhcCcccEEEEecCCCCC--CCCCcC-Ccc-CCcEEECcCcccc-
Confidence 4566677777777755432 12233 344455567888888777764 355554 334 7888888888776
Q ss_pred CccHhhhcCCCCcEEEccCCcCCCCccccccCCCCCCEEEccCCCCccchhhHHhhccCCCCCCCcCEEEccCCcCccCC
Q 002556 231 PIPEAFQHMVSLRFLALSSNELEGGIPKFFGNMCSLNELYLLNNKLSGQLSEFIQNLSSGCTVNSLEGLCLYDNDITGPI 310 (908)
Q Consensus 231 ~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~l~~L~~L~L~~n~l~~~~ 310 (908)
.++..+..+++|++|+|+++.....+|. ++.+++|+.|++++|.....+|..+..+. +|+.|++++|...+.+
T Consensus 625 ~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~------~L~~L~L~~c~~L~~L 697 (1153)
T PLN03210 625 KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLN------KLEDLDMSRCENLEIL 697 (1153)
T ss_pred ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccC------CCCEEeCCCCCCcCcc
Confidence 4666777788888888887765445664 77778888888888776667777777777 8888888887655566
Q ss_pred CCCCCCCCCcEEEccCccCCCccccccccCCCCCEEECCCCcccCccChhhhcCCCCCCEEECCCCCCcc-------ccC
Q 002556 311 PDLGGFSSLKELYLGENSLNGTINKSLNHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLYLANNPLTM-------KLS 383 (908)
Q Consensus 311 ~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~-------~~~ 383 (908)
|...++++|+.|++++|...+.+|.. ..+|+.|++++|.+. .+|.. ..+++|++|++.++.... ..+
T Consensus 698 p~~i~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~--~~l~~L~~L~l~~~~~~~l~~~~~~l~~ 771 (1153)
T PLN03210 698 PTGINLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSN--LRLENLDELILCEMKSEKLWERVQPLTP 771 (1153)
T ss_pred CCcCCCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-ccccc--ccccccccccccccchhhccccccccch
Confidence 65336788888888887655555532 356788888888776 45542 256777777777643211 111
Q ss_pred CCcCCCCCccEEEccCCCCCCChhHHhhcCccccEeeecCccccCCcch
Q 002556 384 HDWVPPFQLKWLSLASCKMGPNFPKWLRTQSQLILLDISNTGISGTVPD 432 (908)
Q Consensus 384 ~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~ 432 (908)
.....+++|+.|++++|.....+|.+++++++|+.|++++|..-+.+|.
T Consensus 772 ~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~ 820 (1153)
T PLN03210 772 LMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPT 820 (1153)
T ss_pred hhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCC
Confidence 1122335667777777766666677777777777777766644334443
No 13
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.86 E-value=1.3e-23 Score=215.09 Aligned_cols=426 Identities=23% Similarity=0.248 Sum_probs=216.5
Q ss_pred CCccEEEcccccCCCCccHhhhcCCCCcEEEccCCcCCCCccccccCCCCCCEEEccC-CCCccchhhHHhhccCCCCCC
Q 002556 216 RNILHLNLASNSLQGPIPEAFQHMVSLRFLALSSNELEGGIPKFFGNMCSLNELYLLN-NKLSGQLSEFIQNLSSGCTVN 294 (908)
Q Consensus 216 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~-n~l~~~~~~~l~~l~~~~~l~ 294 (908)
+.-..++|..|+|+.+.|.+|+.+++|+.||||+|+|+.+-|++|.++++|..|-+.+ |+++......|+
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~--------- 137 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFG--------- 137 (498)
T ss_pred CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhh---------
Confidence 3677888888888877777888888888888888888877788887777776666655 666544444444
Q ss_pred CcCEEEccCCcCccCCCCCCCCCCCcEEEccCccCCCccccccccCCCCCEEECCCCcccCccChhhhcCCCCCCEEECC
Q 002556 295 SLEGLCLYDNDITGPIPDLGGFSSLKELYLGENSLNGTINKSLNHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLYLA 374 (908)
Q Consensus 295 ~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~ 374 (908)
++..|+.|.+.-|++.-...+.|..+++|..|.+.+|.+. .++...|..+..++.+.+.
T Consensus 138 --------------------gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA 196 (498)
T KOG4237|consen 138 --------------------GLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLA 196 (498)
T ss_pred --------------------hHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhh
Confidence 4455555555566665555566666666666666666665 4444456666666666666
Q ss_pred CCCCccccCCCcCCCCCccEEEccCCCCCCChhHHhhcCccccEeeecCccccCCcchhhhhhhhhhHHhccccccccCC
Q 002556 375 NNPLTMKLSHDWVPPFQLKWLSLASCKMGPNFPKWLRTQSQLILLDISNTGISGTVPDWFWDLSVELFFLNLSNNHIKGK 454 (908)
Q Consensus 375 ~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~ 454 (908)
.|++.... +|+.+. .+....|..++......-..+.+.++..+-+..+......+..--.+.
T Consensus 197 ~np~icdC--------nL~wla----~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~------ 258 (498)
T KOG4237|consen 197 QNPFICDC--------NLPWLA----DDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSE------ 258 (498)
T ss_pred cCcccccc--------ccchhh----hHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccc------
Confidence 66533211 111100 000001111222222222222222222222222211110110000000
Q ss_pred CCCccccCCCCcEEEeeCCcccCCCCCCCCCCceeecCCCcCCCCcccccccccccceEEEccCCcccCcCCcccccCCC
Q 002556 455 LPDLSFLRSDDIVVDISSNHFTGQIPPLPSNSTFLNLSKNKFSGSITFLCSIIENTWNIFDLSSNLLSGELPDCWLNFNS 534 (908)
Q Consensus 455 ~p~~~~~~~~l~~l~ls~n~l~g~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~ 534 (908)
+...+..|..|-...++|++|+|++|+++++-+.+|.+...
T Consensus 259 ---------------------------------------d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~ 299 (498)
T KOG4237|consen 259 ---------------------------------------DFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAE 299 (498)
T ss_pred ---------------------------------------cCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhh
Confidence 00111111111111156666666666666666666666666
Q ss_pred CCEEECCCCcCcccCCCCcCCCCCccEEEccCccccccCCcCccCCCCCcEEEccCCccccc-Cchhhhhcccccceeec
Q 002556 535 LFILNLANNSFSGKIPDSMGFLHNIRTLSLNNNRLTRELPSSLKNCSQLRVLDLRNNALFGE-IPIWIGGNLQNLIVLSL 613 (908)
Q Consensus 535 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-ip~~~~~~l~~L~~L~L 613 (908)
+++|.|..|++...-...|.++..|+.|+|.+|+|+...|..|..+.+|.+|++-.|.+.-. --.|++.-+
T Consensus 300 l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wl-------- 371 (498)
T KOG4237|consen 300 LQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWL-------- 371 (498)
T ss_pred hhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHH--------
Confidence 66666666666654445566666666666666666666666666666666666666655311 111222111
Q ss_pred CCCccccccchhhhcCCCCCEEEccCCCCCc---CchhhhccccccccccCCCcccccccceeccCCccccccccceeEE
Q 002556 614 KSNNFHGNIPFQLCYLAFIQVLDLSLNNISG---KIPKCFSNFSTMIQERSSDPIIGMANRIWVLPGYVYQYRYLDNILL 690 (908)
Q Consensus 614 ~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g---~ip~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 690 (908)
+.+.-.|..|. +....++.++++++.+.. ..|++.+-..+-
T Consensus 372 r~~~~~~~~~C--q~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~---------------------------------- 415 (498)
T KOG4237|consen 372 RKKSVVGNPRC--QSPGFVRQIPISDVAFGDFRCGGPEELGCLTSS---------------------------------- 415 (498)
T ss_pred hhCCCCCCCCC--CCCchhccccchhccccccccCCccccCCCCCC----------------------------------
Confidence 11111111111 112234555555554431 111111100000
Q ss_pred eeeccccccccccccc-cEEEccCCcccccchhhhhccccCceEeccCCcccccCCcccCCCCCCCEEeCCCCcccccCC
Q 002556 691 TWKGSEHEYKSTLGFV-KCLDLSSNKLCGPILEEIMDLDGLIALNLSRNNLTGPISPKIGQLKSLDFLDLSRNHFSGSIP 769 (908)
Q Consensus 691 ~~~~~~~~~~~~l~~L-~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip 769 (908)
.....++-+ +...-|+..+. .+|..+. ..-.+|++.+|.++ .+|.+ .+.+| .+|+|+|+++..--
T Consensus 416 -------~cP~~c~c~~tVvRcSnk~lk-~lp~~iP--~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn 481 (498)
T KOG4237|consen 416 -------PCPPPCTCLDTVVRCSNKLLK-LLPRGIP--VDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSN 481 (498)
T ss_pred -------CCCCCcchhhhhHhhcccchh-hcCCCCC--chhHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhc
Confidence 000000111 11222333333 3333322 23356778888887 66766 66777 78888888876666
Q ss_pred ccccccCCCCeEeCcCC
Q 002556 770 SSLVKLCGLGVLDLSYN 786 (908)
Q Consensus 770 ~~l~~L~~L~~L~ls~N 786 (908)
..|.++++|.+|-+|||
T Consensus 482 ~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 482 YTFSNMTQLSTLILSYN 498 (498)
T ss_pred ccccchhhhheeEEecC
Confidence 77888888888888876
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.85 E-value=6e-21 Score=222.79 Aligned_cols=262 Identities=26% Similarity=0.314 Sum_probs=160.1
Q ss_pred cccEeeecCccccCCcchhhhhhhhhhHHhccccccccCCCCCccccCCCCcEEEeeCCcccCCCCCCCCCCceeecCCC
Q 002556 415 QLILLDISNTGISGTVPDWFWDLSVELFFLNLSNNHIKGKLPDLSFLRSDDIVVDISSNHFTGQIPPLPSNSTFLNLSKN 494 (908)
Q Consensus 415 ~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~l~~l~ls~n~l~g~~p~~~~~L~~L~l~~n 494 (908)
.-..|++++|.++ .+|..+. ++|+.|++.+|+++ . +|..+++|++|++++|
T Consensus 202 ~~~~LdLs~~~Lt-sLP~~l~---~~L~~L~L~~N~Lt------------------------~-LP~lp~~Lk~LdLs~N 252 (788)
T PRK15387 202 GNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLT------------------------S-LPALPPELRTLEVSGN 252 (788)
T ss_pred CCcEEEcCCCCCC-cCCcchh---cCCCEEEccCCcCC------------------------C-CCCCCCCCcEEEecCC
Confidence 3456777777766 4555443 24454555555444 2 3444455555555555
Q ss_pred cCCCCcccccccccccceEEEccCCcccCcCCcccccCCCCCEEECCCCcCcccCCCCcCCCCCccEEEccCccccccCC
Q 002556 495 KFSGSITFLCSIIENTWNIFDLSSNLLSGELPDCWLNFNSLFILNLANNSFSGKIPDSMGFLHNIRTLSLNNNRLTRELP 574 (908)
Q Consensus 495 ~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 574 (908)
+++.. |... ++|+.|++++|.++. +|.. ..+|+.|++++|+++ .+|. .+++|+.|++++|++++ +|
T Consensus 253 ~LtsL-P~lp----~sL~~L~Ls~N~L~~-Lp~l---p~~L~~L~Ls~N~Lt-~LP~---~p~~L~~LdLS~N~L~~-Lp 318 (788)
T PRK15387 253 QLTSL-PVLP----PGLLELSIFSNPLTH-LPAL---PSGLCKLWIFGNQLT-SLPV---LPPGLQELSVSDNQLAS-LP 318 (788)
T ss_pred ccCcc-cCcc----cccceeeccCCchhh-hhhc---hhhcCEEECcCCccc-cccc---cccccceeECCCCcccc-CC
Confidence 55532 2111 456666666666652 3322 235666777777766 3443 23567777777777764 44
Q ss_pred cCccCCCCCcEEEccCCcccccCchhhhhcccccceeecCCCccccccchhhhcCCCCCEEEccCCCCCcCchhhhcccc
Q 002556 575 SSLKNCSQLRVLDLRNNALFGEIPIWIGGNLQNLIVLSLKSNNFHGNIPFQLCYLAFIQVLDLSLNNISGKIPKCFSNFS 654 (908)
Q Consensus 575 ~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~ 654 (908)
... .+|+.|++++|+++ .+|.. ..+|++|+|++|++++ +|.. .++|+.|++++|+++ .+|...
T Consensus 319 ~lp---~~L~~L~Ls~N~L~-~LP~l----p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~-~LP~l~---- 381 (788)
T PRK15387 319 ALP---SELCKLWAYNNQLT-SLPTL----PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPALP---- 381 (788)
T ss_pred CCc---ccccccccccCccc-ccccc----ccccceEecCCCccCC-CCCC---Ccccceehhhccccc-cCcccc----
Confidence 322 34666677777775 45531 2467777777777763 4432 245666777777766 244211
Q ss_pred ccccccCCCcccccccceeccCCccccccccceeEEeeeccccccccccccccEEEccCCcccccchhhhhccccCceEe
Q 002556 655 TMIQERSSDPIIGMANRIWVLPGYVYQYRYLDNILLTWKGSEHEYKSTLGFVKCLDLSSNKLCGPILEEIMDLDGLIALN 734 (908)
Q Consensus 655 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ 734 (908)
..|+.|++++|+|++ +|.. .++|+.|+
T Consensus 382 -------------------------------------------------~~L~~LdLs~N~Lt~-LP~l---~s~L~~Ld 408 (788)
T PRK15387 382 -------------------------------------------------SGLKELIVSGNRLTS-LPVL---PSELKELM 408 (788)
T ss_pred -------------------------------------------------cccceEEecCCcccC-CCCc---ccCCCEEE
Confidence 134678888888885 4543 35788888
Q ss_pred ccCCcccccCCcccCCCCCCCEEeCCCCcccccCCccccccCCCCeEeCcCCcccccCCC
Q 002556 735 LSRNNLTGPISPKIGQLKSLDFLDLSRNHFSGSIPSSLVKLCGLGVLDLSYNNLSGKIPL 794 (908)
Q Consensus 735 Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~ls~N~l~g~iP~ 794 (908)
+++|++++ +|... .+|+.|++++|+++ .+|..+.+++.|+.|++++|+|+|.+|.
T Consensus 409 LS~N~Lss-IP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~ 463 (788)
T PRK15387 409 VSGNRLTS-LPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 463 (788)
T ss_pred ccCCcCCC-CCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHH
Confidence 88888884 66533 46778888888888 6888888888888888888888887774
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.84 E-value=3.1e-20 Score=216.87 Aligned_cols=129 Identities=26% Similarity=0.371 Sum_probs=92.9
Q ss_pred ccceEEEccCCcccCcCCcccccCCCCCEEECCCCcCcccCCCCcCCCCCccEEEccCccccccCCcCccCCCCCcEEEc
Q 002556 509 NTWNIFDLSSNLLSGELPDCWLNFNSLFILNLANNSFSGKIPDSMGFLHNIRTLSLNNNRLTRELPSSLKNCSQLRVLDL 588 (908)
Q Consensus 509 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 588 (908)
..|+.|++++|++++ +|.. .++|+.|++++|++++ +|.. ..+|+.|++++|++++ +|.. .++|+.|++
T Consensus 342 ~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdL 409 (788)
T PRK15387 342 SGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTS-LPVL---PSELKELMV 409 (788)
T ss_pred cccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Cccc---ccccceEEecCCcccC-CCCc---ccCCCEEEc
Confidence 346666666666663 3432 2457777888888773 5543 3568888888888874 5543 257888899
Q ss_pred cCCcccccCchhhhhcccccceeecCCCccccccchhhhcCCCCCEEEccCCCCCcCchhhhccccc
Q 002556 589 RNNALFGEIPIWIGGNLQNLIVLSLKSNNFHGNIPFQLCYLAFIQVLDLSLNNISGKIPKCFSNFST 655 (908)
Q Consensus 589 s~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~ 655 (908)
++|+++ .+|.. ..+|+.|++++|+++ .+|..++.+++|+.|+|++|+++|.+|..+..+.+
T Consensus 410 S~N~Ls-sIP~l----~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~l~s 470 (788)
T PRK15387 410 SGNRLT-SLPML----PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITS 470 (788)
T ss_pred cCCcCC-CCCcc----hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHHHhc
Confidence 988887 57753 346788899999988 68888888999999999999999888877755443
No 16
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.82 E-value=9.4e-22 Score=201.54 Aligned_cols=299 Identities=23% Similarity=0.169 Sum_probs=224.7
Q ss_pred ccceEEEccCCcccCcCCcccccCCCCCEEECCCCcCcccCCCCcCCCCCccEEEccC-ccccccCCcCccCCCCCcEEE
Q 002556 509 NTWNIFDLSSNLLSGELPDCWLNFNSLFILNLANNSFSGKIPDSMGFLHNIRTLSLNN-NRLTRELPSSLKNCSQLRVLD 587 (908)
Q Consensus 509 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~l~~l~~L~~L~ 587 (908)
+....++|..|+|+...|.+|+.+++|+.||||+|+|+.+-|++|.++++|..|.+-+ |+|+......|.++.+|+.|.
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL 146 (498)
T ss_pred CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence 4556778888888888888999999999999999999999999999999988887766 888865556899999999999
Q ss_pred ccCCcccccCchhhhhcccccceeecCCCccccccchhhhcCCCCCEEEccCCCCC------------cCchhhhccccc
Q 002556 588 LRNNALFGEIPIWIGGNLQNLIVLSLKSNNFHGNIPFQLCYLAFIQVLDLSLNNIS------------GKIPKCFSNFST 655 (908)
Q Consensus 588 Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~------------g~ip~~l~~l~~ 655 (908)
+.-|++. .++...+..+++|..|.+.+|.+...--..+..+.+++.+.+..|.+- ...|..++....
T Consensus 147 lNan~i~-Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc 225 (498)
T KOG4237|consen 147 LNANHIN-CIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARC 225 (498)
T ss_pred cChhhhc-chhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhccccee
Confidence 9999997 555555558999999999999998443347888999999999988842 122222322222
Q ss_pred cccccCCCcccccccceeccCCccccccccceeEE-------eeeccccccccccccccEEEccCCcccccchhhhhccc
Q 002556 656 MIQERSSDPIIGMANRIWVLPGYVYQYRYLDNILL-------TWKGSEHEYKSTLGFVKCLDLSSNKLCGPILEEIMDLD 728 (908)
Q Consensus 656 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~ 728 (908)
..... -...|+.......+. -|.+.+.. .........+..+++|++|+|++|+++++-+..|.++.
T Consensus 226 ~~p~r------l~~~Ri~q~~a~kf~-c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a 298 (498)
T KOG4237|consen 226 VSPYR------LYYKRINQEDARKFL-CSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAA 298 (498)
T ss_pred cchHH------HHHHHhcccchhhhh-hhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchh
Confidence 11000 000011000000000 00000000 00111234467899999999999999999999999999
Q ss_pred cCceEeccCCcccccCCcccCCCCCCCEEeCCCCcccccCCccccccCCCCeEeCcCCcccccCCCCccccccccccccC
Q 002556 729 GLIALNLSRNNLTGPISPKIGQLKSLDFLDLSRNHFSGSIPSSLVKLCGLGVLDLSYNNLSGKIPLGTQLQSFNASVYAG 808 (908)
Q Consensus 729 ~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~g 808 (908)
.+++|.|..|+|...-...|.++..|+.|+|.+|+|+..-|..|..+.+|.+|++-.|++.|.|-..|.-.|+...+..|
T Consensus 299 ~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~ 378 (498)
T KOG4237|consen 299 ELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVG 378 (498)
T ss_pred hhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCCCCC
Confidence 99999999999987777889999999999999999999999999999999999999999999999888888887777777
Q ss_pred CCCCcCCC
Q 002556 809 NLELCGPP 816 (908)
Q Consensus 809 n~~lcg~~ 816 (908)
|+. |+.|
T Consensus 379 ~~~-Cq~p 385 (498)
T KOG4237|consen 379 NPR-CQSP 385 (498)
T ss_pred CCC-CCCC
Confidence 765 5543
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.79 E-value=3.4e-19 Score=209.87 Aligned_cols=243 Identities=22% Similarity=0.357 Sum_probs=155.2
Q ss_pred EEEeeCCcccCCCCCCCCCCceeecCCCcCCCCcccccccccccceEEEccCCcccCcCCcccccCCCCCEEECCCCcCc
Q 002556 467 VVDISSNHFTGQIPPLPSNSTFLNLSKNKFSGSITFLCSIIENTWNIFDLSSNLLSGELPDCWLNFNSLFILNLANNSFS 546 (908)
Q Consensus 467 ~l~ls~n~l~g~~p~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 546 (908)
.++++++.++......+..++.|++++|+++.....+. .+|+.|++++|+++ .+|..+. .+|+.|+|++|++.
T Consensus 182 ~L~L~~~~LtsLP~~Ip~~L~~L~Ls~N~LtsLP~~l~----~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~ 254 (754)
T PRK15370 182 ELRLKILGLTTIPACIPEQITTLILDNNELKSLPENLQ----GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT 254 (754)
T ss_pred EEEeCCCCcCcCCcccccCCcEEEecCCCCCcCChhhc----cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC
Confidence 45555555553222234556666666666664322222 46777777777776 3454443 36777788877777
Q ss_pred ccCCCCcCCCCCccEEEccCccccccCCcCccCCCCCcEEEccCCcccccCchhhhhcccccceeecCCCccccccchhh
Q 002556 547 GKIPDSMGFLHNIRTLSLNNNRLTRELPSSLKNCSQLRVLDLRNNALFGEIPIWIGGNLQNLIVLSLKSNNFHGNIPFQL 626 (908)
Q Consensus 547 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l 626 (908)
.+|..+. .+|+.|++++|+++ .+|..+. ++|+.|++++|+++ .+|..+. ++|+.|++++|+++. +|..+
T Consensus 255 -~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp---~sL~~L~Ls~N~Lt~-LP~~l 323 (754)
T PRK15370 255 -ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHLP---SGITHLNVQSNSLTA-LPETL 323 (754)
T ss_pred -cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc-cCcccch---hhHHHHHhcCCcccc-CCccc
Confidence 5565543 46777888877777 4565543 47788888888776 4665432 467778888887773 45443
Q ss_pred hcCCCCCEEEccCCCCCcCchhhhccccccccccCCCcccccccceeccCCccccccccceeEEeeeccccccccccccc
Q 002556 627 CYLAFIQVLDLSLNNISGKIPKCFSNFSTMIQERSSDPIIGMANRIWVLPGYVYQYRYLDNILLTWKGSEHEYKSTLGFV 706 (908)
Q Consensus 627 ~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L 706 (908)
.++|+.|++++|.+++ +|..+. +.|
T Consensus 324 --~~sL~~L~Ls~N~Lt~-LP~~l~----------------------------------------------------~sL 348 (754)
T PRK15370 324 --PPGLKTLEAGENALTS-LPASLP----------------------------------------------------PEL 348 (754)
T ss_pred --cccceeccccCCcccc-CChhhc----------------------------------------------------Ccc
Confidence 2577788888887763 443221 234
Q ss_pred cEEEccCCcccccchhhhhccccCceEeccCCcccccCCcccCCCCCCCEEeCCCCcccccCCccccc----cCCCCeEe
Q 002556 707 KCLDLSSNKLCGPILEEIMDLDGLIALNLSRNNLTGPISPKIGQLKSLDFLDLSRNHFSGSIPSSLVK----LCGLGVLD 782 (908)
Q Consensus 707 ~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~----L~~L~~L~ 782 (908)
+.|++++|+++ .+|..+. ++|+.|+|++|+|+ .+|+.+. .+|+.|++++|+++ .+|..+.. ++.+..++
T Consensus 349 ~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~ 421 (754)
T PRK15370 349 QVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRII 421 (754)
T ss_pred cEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEE
Confidence 67888888877 4565553 57888888888887 4566554 36788888888887 55655433 46677888
Q ss_pred CcCCccc
Q 002556 783 LSYNNLS 789 (908)
Q Consensus 783 ls~N~l~ 789 (908)
+.+|+++
T Consensus 422 L~~Npls 428 (754)
T PRK15370 422 VEYNPFS 428 (754)
T ss_pred eeCCCcc
Confidence 8888876
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.77 E-value=6.7e-19 Score=207.35 Aligned_cols=266 Identities=27% Similarity=0.392 Sum_probs=177.8
Q ss_pred cccEeeecCccccCCcchhhhhhhhhhHHhccccccccCCCCCccccCCCCcEEEeeCCcccCCCCCCCCCCceeecCCC
Q 002556 415 QLILLDISNTGISGTVPDWFWDLSVELFFLNLSNNHIKGKLPDLSFLRSDDIVVDISSNHFTGQIPPLPSNSTFLNLSKN 494 (908)
Q Consensus 415 ~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~l~~l~ls~n~l~g~~p~~~~~L~~L~l~~n 494 (908)
+...|+++++.++ .+|..+ .+.++.|++++|+++. +|. ..+.+|+.|++++|
T Consensus 179 ~~~~L~L~~~~Lt-sLP~~I---p~~L~~L~Ls~N~Lts-LP~-----------------------~l~~nL~~L~Ls~N 230 (754)
T PRK15370 179 NKTELRLKILGLT-TIPACI---PEQITTLILDNNELKS-LPE-----------------------NLQGNIKTLYANSN 230 (754)
T ss_pred CceEEEeCCCCcC-cCCccc---ccCCcEEEecCCCCCc-CCh-----------------------hhccCCCEEECCCC
Confidence 5677888888777 455433 2345555555555552 222 22345666666666
Q ss_pred cCCCCcccccccccccceEEEccCCcccCcCCcccccCCCCCEEECCCCcCcccCCCCcCCCCCccEEEccCccccccCC
Q 002556 495 KFSGSITFLCSIIENTWNIFDLSSNLLSGELPDCWLNFNSLFILNLANNSFSGKIPDSMGFLHNIRTLSLNNNRLTRELP 574 (908)
Q Consensus 495 ~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 574 (908)
+++.....+. ..|+.|++++|.+. .+|..+. ++|+.|++++|+++ .+|..+. ++|+.|++++|++++ +|
T Consensus 231 ~LtsLP~~l~----~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP 299 (754)
T PRK15370 231 QLTSIPATLP----DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LP 299 (754)
T ss_pred ccccCChhhh----ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-Cc
Confidence 6553222121 46788888888877 5565554 47888888888888 5676554 578889999888874 56
Q ss_pred cCccCCCCCcEEEccCCcccccCchhhhhcccccceeecCCCccccccchhhhcCCCCCEEEccCCCCCcCchhhhcccc
Q 002556 575 SSLKNCSQLRVLDLRNNALFGEIPIWIGGNLQNLIVLSLKSNNFHGNIPFQLCYLAFIQVLDLSLNNISGKIPKCFSNFS 654 (908)
Q Consensus 575 ~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~ 654 (908)
..+. ++|+.|++++|+++ .+|..+ .++|+.|++++|.+++ +|..+. ++|+.|++++|+++ .+|..+.
T Consensus 300 ~~lp--~sL~~L~Ls~N~Lt-~LP~~l---~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--- 366 (754)
T PRK15370 300 AHLP--SGITHLNVQSNSLT-ALPETL---PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETLP--- 366 (754)
T ss_pred ccch--hhHHHHHhcCCccc-cCCccc---cccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhhc---
Confidence 5443 47888899999887 566554 3688889999998884 676653 68999999999887 4554331
Q ss_pred ccccccCCCcccccccceeccCCccccccccceeEEeeeccccccccccccccEEEccCCcccccchhhhhccccCceEe
Q 002556 655 TMIQERSSDPIIGMANRIWVLPGYVYQYRYLDNILLTWKGSEHEYKSTLGFVKCLDLSSNKLCGPILEEIMDLDGLIALN 734 (908)
Q Consensus 655 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ 734 (908)
+.|+.|+|++|+++. +|+.+. .+|+.|+
T Consensus 367 -------------------------------------------------~~L~~LdLs~N~Lt~-LP~~l~--~sL~~Ld 394 (754)
T PRK15370 367 -------------------------------------------------PTITTLDVSRNALTN-LPENLP--AALQIMQ 394 (754)
T ss_pred -------------------------------------------------CCcCEEECCCCcCCC-CCHhHH--HHHHHHh
Confidence 134789999999884 566554 3688899
Q ss_pred ccCCcccccCCccc----CCCCCCCEEeCCCCcccccCCccccccCCCCeEeCcCCcccccC
Q 002556 735 LSRNNLTGPISPKI----GQLKSLDFLDLSRNHFSGSIPSSLVKLCGLGVLDLSYNNLSGKI 792 (908)
Q Consensus 735 Ls~N~l~~~ip~~l----~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~ls~N~l~g~i 792 (908)
+++|+++ .+|..+ +.++++..|++.+|.++. ..+. .|+.+ ++.+.+.|++
T Consensus 395 Ls~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls~---~tl~---~L~~L-l~s~~~~gp~ 448 (754)
T PRK15370 395 ASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFSE---RTIQ---NMQRL-MSSVGYQGPR 448 (754)
T ss_pred hccCCcc-cCchhHHHHhhcCCCccEEEeeCCCccH---HHHH---HHHHh-hhcccccCCc
Confidence 9999988 455543 445788899999999873 3333 34444 4455555543
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.71 E-value=6.3e-18 Score=185.49 Aligned_cols=44 Identities=16% Similarity=0.166 Sum_probs=23.4
Q ss_pred hHHhhcCccccEeeecCccccCCcch----hhhhhhhhhHHhcccccc
Q 002556 407 PKWLRTQSQLILLDISNTGISGTVPD----WFWDLSVELFFLNLSNNH 450 (908)
Q Consensus 407 p~~l~~l~~L~~L~Ls~n~l~~~~p~----~~~~~~~~L~~L~L~~n~ 450 (908)
...+..+++|+++++++|.+...-.. .+....+.++.+++.+|.
T Consensus 271 ~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 271 AEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred HHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence 33445556677777777766644222 222221356667766654
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.71 E-value=7.3e-18 Score=184.94 Aligned_cols=276 Identities=23% Similarity=0.212 Sum_probs=153.2
Q ss_pred EEecCCCcCCCCCchhHhhcCCCCCCEEEccCCCCCCCCC-Cc-cccccccCcccEEEcCCCCCCC-----CCchhhhhh
Q 002556 141 HLDLSCVNLTKSSDWFQVVANLHYLKSLVLRSCALPPINP-SF-IWHFNLSTSIETLDLFDNNLPS-----SSVYPWFLN 213 (908)
Q Consensus 141 ~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~-~~-~~l~~l~~~L~~LdLs~n~l~~-----~~~p~~~~~ 213 (908)
.|+|+.+.+++. .+...+..++.|++|++++|.++.... .+ ..+... +++++|+++++.+.+ ..++..+..
T Consensus 2 ~l~L~~~~l~~~-~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~-~~l~~l~l~~~~~~~~~~~~~~~~~~l~~ 79 (319)
T cd00116 2 QLSLKGELLKTE-RATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQ-PSLKELCLSLNETGRIPRGLQSLLQGLTK 79 (319)
T ss_pred ccccccCccccc-chHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhC-CCceEEeccccccCCcchHHHHHHHHHHh
Confidence 477888888753 466777777788888888888754311 00 222333 667888887776652 012344555
Q ss_pred ccCCccEEEcccccCCCCccHhhhcCCC---CcEEEccCCcCCC----CccccccCC-CCCCEEEccCCCCccchh----
Q 002556 214 LSRNILHLNLASNSLQGPIPEAFQHMVS---LRFLALSSNELEG----GIPKFFGNM-CSLNELYLLNNKLSGQLS---- 281 (908)
Q Consensus 214 l~~~L~~L~Ls~n~l~~~~p~~l~~l~~---L~~L~Ls~n~l~~----~~p~~l~~l-~~L~~L~Ls~n~l~~~~~---- 281 (908)
+. +|++|++++|.+.+..+..+..+.+ |++|++++|++++ .+...+..+ ++|+.|++++|.+++...
T Consensus 80 ~~-~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~ 158 (319)
T cd00116 80 GC-GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALA 158 (319)
T ss_pred cC-ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHH
Confidence 55 7777777777776656666655555 7777777777662 222344555 677777777777764322
Q ss_pred hHHhhccCCCCCCCcCEEEccCCcCccC----CCC-CCCCCCCcEEEccCccCCCcc----ccccccCCCCCEEECCCCc
Q 002556 282 EFIQNLSSGCTVNSLEGLCLYDNDITGP----IPD-LGGFSSLKELYLGENSLNGTI----NKSLNHLFKLETLSLDGNS 352 (908)
Q Consensus 282 ~~l~~l~~~~~l~~L~~L~L~~n~l~~~----~~~-l~~l~~L~~L~Ls~n~l~~~~----~~~l~~l~~L~~L~L~~n~ 352 (908)
..+..+. +|++|++++|.+++. ++. +..+++|++|++++|.+++.. ...+..+++|++|++++|.
T Consensus 159 ~~~~~~~------~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~ 232 (319)
T cd00116 159 KALRANR------DLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNN 232 (319)
T ss_pred HHHHhCC------CcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCc
Confidence 2233333 666666666666531 111 334456666666666665332 2234455666666666666
Q ss_pred ccCccChhhhc----CCCCCCEEECCCCCCcc----ccCCCcCCCCCccEEEccCCCCCCC----hhHHhhcC-ccccEe
Q 002556 353 FTGVISETFFS----NMSNLQMLYLANNPLTM----KLSHDWVPPFQLKWLSLASCKMGPN----FPKWLRTQ-SQLILL 419 (908)
Q Consensus 353 l~~~~~~~~l~----~l~~L~~L~L~~n~l~~----~~~~~~~~~~~L~~L~L~~n~l~~~----~p~~l~~l-~~L~~L 419 (908)
+++........ ..+.|++|++++|.++. .+...+...++|+++++++|.+... ....+... +.|+.+
T Consensus 233 l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~ 312 (319)
T cd00116 233 LTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESL 312 (319)
T ss_pred CchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhc
Confidence 55422111111 12566666666666541 1122233335566666666666533 23233333 455666
Q ss_pred eecCcc
Q 002556 420 DISNTG 425 (908)
Q Consensus 420 ~Ls~n~ 425 (908)
++.+|.
T Consensus 313 ~~~~~~ 318 (319)
T cd00116 313 WVKDDS 318 (319)
T ss_pred ccCCCC
Confidence 655553
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.66 E-value=1.9e-18 Score=157.38 Aligned_cols=182 Identities=28% Similarity=0.440 Sum_probs=104.1
Q ss_pred CCCccEEEccCccccccCCcCccCCCCCcEEEccCCcccccCchhhhhcccccceeecCCCccccccchhhhcCCCCCEE
Q 002556 556 LHNIRTLSLNNNRLTRELPSSLKNCSQLRVLDLRNNALFGEIPIWIGGNLQNLIVLSLKSNNFHGNIPFQLCYLAFIQVL 635 (908)
Q Consensus 556 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L 635 (908)
+..++.|.|++|+++ .+|..+..+.+|+.|++++|++. .+|..+. .+++|+.|+++-|++. ..|..|+.++.|+.|
T Consensus 32 ~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~is-sl~klr~lnvgmnrl~-~lprgfgs~p~levl 107 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSIS-SLPKLRILNVGMNRLN-ILPRGFGSFPALEVL 107 (264)
T ss_pred hhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhh-hchhhhheecchhhhh-cCccccCCCchhhhh
Confidence 334444444444444 33444444555555555555553 4444444 4555555555555554 445555555566666
Q ss_pred EccCCCCCc-CchhhhccccccccccCCCcccccccceeccCCccccccccceeEEeeeccccccccccccccEEEccCC
Q 002556 636 DLSLNNISG-KIPKCFSNFSTMIQERSSDPIIGMANRIWVLPGYVYQYRYLDNILLTWKGSEHEYKSTLGFVKCLDLSSN 714 (908)
Q Consensus 636 ~Ls~N~l~g-~ip~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N 714 (908)
||.+|++.. .+|..|..++ .|+.|.|+.|
T Consensus 108 dltynnl~e~~lpgnff~m~--------------------------------------------------tlralyl~dn 137 (264)
T KOG0617|consen 108 DLTYNNLNENSLPGNFFYMT--------------------------------------------------TLRALYLGDN 137 (264)
T ss_pred hccccccccccCCcchhHHH--------------------------------------------------HHHHHHhcCC
Confidence 666655542 2333222222 2245666666
Q ss_pred cccccchhhhhccccCceEeccCCcccccCCcccCCCCCCCEEeCCCCcccccCCccccccCC---CCeEeCcCCccccc
Q 002556 715 KLCGPILEEIMDLDGLIALNLSRNNLTGPISPKIGQLKSLDFLDLSRNHFSGSIPSSLVKLCG---LGVLDLSYNNLSGK 791 (908)
Q Consensus 715 ~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~---L~~L~ls~N~l~g~ 791 (908)
.+. .+|.+++++++|+.|.+..|.+- ..|.+++.++.|+.|++.+|+++ .+|..++.+.- =+.+.+.+|++..+
T Consensus 138 dfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l~l~~~k~v~r~E~NPwv~p 214 (264)
T KOG0617|consen 138 DFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANLDLVGNKQVMRMEENPWVNP 214 (264)
T ss_pred Ccc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhhhhhhhHHHHhhhhCCCCCh
Confidence 665 56677777777777777777776 56777777777777777777777 56666665432 24566778888766
Q ss_pred CCC
Q 002556 792 IPL 794 (908)
Q Consensus 792 iP~ 794 (908)
|..
T Consensus 215 Iae 217 (264)
T KOG0617|consen 215 IAE 217 (264)
T ss_pred HHH
Confidence 653
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.65 E-value=3.1e-18 Score=156.04 Aligned_cols=184 Identities=27% Similarity=0.485 Sum_probs=103.9
Q ss_pred CCCCCEEECCCCcCcccCCCCcCCCCCccEEEccCccccccCCcCccCCCCCcEEEccCCcccccCchhhhhccccccee
Q 002556 532 FNSLFILNLANNSFSGKIPDSMGFLHNIRTLSLNNNRLTRELPSSLKNCSQLRVLDLRNNALFGEIPIWIGGNLQNLIVL 611 (908)
Q Consensus 532 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L 611 (908)
++..+.|.||+|+++ .+|..+..+.+|+.|++++|+++ .+|.+++.+++|+.|+++-|++. ..|..++ .++.|++|
T Consensus 32 ~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfg-s~p~levl 107 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFG-SFPALEVL 107 (264)
T ss_pred hhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccC-CCchhhhh
Confidence 344444555555555 34444555555555555555554 34555555555555555555553 4455544 45555555
Q ss_pred ecCCCcccc-ccchhhhcCCCCCEEEccCCCCCcCchhhhccccccccccCCCcccccccceeccCCccccccccceeEE
Q 002556 612 SLKSNNFHG-NIPFQLCYLAFIQVLDLSLNNISGKIPKCFSNFSTMIQERSSDPIIGMANRIWVLPGYVYQYRYLDNILL 690 (908)
Q Consensus 612 ~L~~N~l~~-~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 690 (908)
||.+|++.. .+|..|..++.|+.|.|++|.+. .+|..++++++|
T Consensus 108 dltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~l---------------------------------- 152 (264)
T KOG0617|consen 108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNL---------------------------------- 152 (264)
T ss_pred hccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcce----------------------------------
Confidence 555555532 34555555555555555555554 445444444333
Q ss_pred eeeccccccccccccccEEEccCCcccccchhhhhccccCceEeccCCcccccCCcccCCCC---CCCEEeCCCCccccc
Q 002556 691 TWKGSEHEYKSTLGFVKCLDLSSNKLCGPILEEIMDLDGLIALNLSRNNLTGPISPKIGQLK---SLDFLDLSRNHFSGS 767 (908)
Q Consensus 691 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~---~L~~L~Ls~N~l~~~ 767 (908)
+.|.+..|.+- ..|.+++.++.|++|.+.+|+++ .+|++++++. +=+++.+.+|..-..
T Consensus 153 ----------------qil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l~l~~~k~v~r~E~NPwv~p 214 (264)
T KOG0617|consen 153 ----------------QILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANLDLVGNKQVMRMEENPWVNP 214 (264)
T ss_pred ----------------eEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhhhhhhhHHHHhhhhCCCCCh
Confidence 45555555554 46788888888888888888888 6777777653 234566667776655
Q ss_pred CCccc
Q 002556 768 IPSSL 772 (908)
Q Consensus 768 ip~~l 772 (908)
|.+.|
T Consensus 215 IaeQf 219 (264)
T KOG0617|consen 215 IAEQF 219 (264)
T ss_pred HHHHH
Confidence 55544
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.57 E-value=1.2e-14 Score=171.44 Aligned_cols=118 Identities=40% Similarity=0.635 Sum_probs=104.6
Q ss_pred cccEEEccCCcccccchhhhhccccCceEeccCCcccccCCcccCCCCCCCEEeCCCCcccccCCccccccCCCCeEeCc
Q 002556 705 FVKCLDLSSNKLCGPILEEIMDLDGLIALNLSRNNLTGPISPKIGQLKSLDFLDLSRNHFSGSIPSSLVKLCGLGVLDLS 784 (908)
Q Consensus 705 ~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~ls 784 (908)
.++.|+|++|.++|.+|..++.+++|+.|+|++|.++|.+|..++++++|+.|||++|+++|.+|+.++++++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 35889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccCCCCc--cccccccccccCCCCCcCCCCCCCCC
Q 002556 785 YNNLSGKIPLGT--QLQSFNASVYAGNLELCGPPLPNQCP 822 (908)
Q Consensus 785 ~N~l~g~iP~~~--~~~~~~~~~~~gn~~lcg~~~~~~C~ 822 (908)
+|+++|.+|..- .+.......+.+|+++||.|....|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~ 538 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG 538 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence 999999999642 11223344688999999977555663
No 24
>PLN03150 hypothetical protein; Provisional
Probab=99.47 E-value=3e-13 Score=159.46 Aligned_cols=136 Identities=28% Similarity=0.357 Sum_probs=75.7
Q ss_pred CCCHHHHHHHHHHHhcCccCcCCCCCCCCCCCCCCCC----CccccccCCC--CC--CeEEEeecCCCcccchhhhhHHh
Q 002556 61 RCVDEEREALLTFRQSLVDEYGILSSWGREDGKRDCC----KWRGVRCSNT--TG--HVKVLNLRTSDYEFARRKFLKEW 132 (908)
Q Consensus 61 ~~~~~~~~aLl~~k~~~~~~~~~l~~W~~~~~~~~~C----~w~gv~C~~~--~~--~v~~l~L~~~~l~~~~~~~~~~~ 132 (908)
.+.++|.+||+++|+++.++.. .+|+ +.+|| .|.||.|... .+ +|+.|+|+++++.|.+
T Consensus 368 ~t~~~~~~aL~~~k~~~~~~~~--~~W~----g~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~i------- 434 (623)
T PLN03150 368 KTLLEEVSALQTLKSSLGLPLR--FGWN----GDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFI------- 434 (623)
T ss_pred ccCchHHHHHHHHHHhcCCccc--CCCC----CCCCCCcccccccceeeccCCCCceEEEEEECCCCCccccC-------
Confidence 4577899999999999865532 4796 33443 7999999521 12 4666777666666543
Q ss_pred hcCCCCCcEEecCCCcCCCCCchhHhhcCCCCCCEEEccCCCCCCCCCCccccccccCcccEEEcCCCCCCCCCchhhhh
Q 002556 133 LSHLSSLRHLDLSCVNLTKSSDWFQVVANLHYLKSLVLRSCALPPINPSFIWHFNLSTSIETLDLFDNNLPSSSVYPWFL 212 (908)
Q Consensus 133 l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~~L~~LdLs~n~l~~~~~p~~~~ 212 (908)
+..++++++|++|+|++|.+.|.+| ..+..+ ++|+.|||++|.+.+ .+|..++
T Consensus 435 -----------------------p~~i~~L~~L~~L~Ls~N~l~g~iP--~~~~~l-~~L~~LdLs~N~lsg-~iP~~l~ 487 (623)
T PLN03150 435 -----------------------PNDISKLRHLQSINLSGNSIRGNIP--PSLGSI-TSLEVLDLSYNSFNG-SIPESLG 487 (623)
T ss_pred -----------------------CHHHhCCCCCCEEECCCCcccCcCC--hHHhCC-CCCCEEECCCCCCCC-CCchHHh
Confidence 3345555555555555555555444 334444 444444444444444 4444444
Q ss_pred hccCCccEEEcccccCCCCccHhhh
Q 002556 213 NLSRNILHLNLASNSLQGPIPEAFQ 237 (908)
Q Consensus 213 ~l~~~L~~L~Ls~n~l~~~~p~~l~ 237 (908)
++. +|++|+|++|.++|.+|..++
T Consensus 488 ~L~-~L~~L~Ls~N~l~g~iP~~l~ 511 (623)
T PLN03150 488 QLT-SLRILNLNGNSLSGRVPAALG 511 (623)
T ss_pred cCC-CCCEEECcCCcccccCChHHh
Confidence 444 444444444444444444443
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.33 E-value=6.4e-14 Score=150.85 Aligned_cols=195 Identities=25% Similarity=0.415 Sum_probs=150.9
Q ss_pred CCCCCEEECCCCcCcccCCCCcCCCCCccEEEccCccccccCCcCccCCCCCcEEEccCCcccccCchhhhhccccccee
Q 002556 532 FNSLFILNLANNSFSGKIPDSMGFLHNIRTLSLNNNRLTRELPSSLKNCSQLRVLDLRNNALFGEIPIWIGGNLQNLIVL 611 (908)
Q Consensus 532 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L 611 (908)
+.--...|++.|++. .+|..++.+..|+.+.|..|.+. .+|..+.++..|..|||+.|+++ .+|..++ .| -|+.|
T Consensus 74 ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC-~l-pLkvl 148 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLC-DL-PLKVL 148 (722)
T ss_pred ccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhh-cC-cceeE
Confidence 444567788889888 77888888888888888888887 68888888888999999999887 7888776 34 48888
Q ss_pred ecCCCccccccchhhhcCCCCCEEEccCCCCCcCchhhhccccccccccCCCcccccccceeccCCccccccccceeEEe
Q 002556 612 SLKSNNFHGNIPFQLCYLAFIQVLDLSLNNISGKIPKCFSNFSTMIQERSSDPIIGMANRIWVLPGYVYQYRYLDNILLT 691 (908)
Q Consensus 612 ~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 691 (908)
-+++|+++ .+|..++.+..|..||.+.|++. .+|..++++.+|
T Consensus 149 i~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~sl----------------------------------- 191 (722)
T KOG0532|consen 149 IVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSL----------------------------------- 191 (722)
T ss_pred EEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHH-----------------------------------
Confidence 88888887 67888888888888888888887 666666665555
Q ss_pred eeccccccccccccccEEEccCCcccccchhhhhccccCceEeccCCcccccCCcccCCCCCCCEEeCCCCcccccCCcc
Q 002556 692 WKGSEHEYKSTLGFVKCLDLSSNKLCGPILEEIMDLDGLIALNLSRNNLTGPISPKIGQLKSLDFLDLSRNHFSGSIPSS 771 (908)
Q Consensus 692 ~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~ 771 (908)
+.|.++.|++. ..|+++..| .|..||+|+|+++ .||-.|.+|+.|++|-|.+|.|. ..|..
T Consensus 192 ---------------r~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAq 252 (722)
T KOG0532|consen 192 ---------------RDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQ 252 (722)
T ss_pred ---------------HHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHH
Confidence 56777777777 467777744 4777888888888 78888888888888888888888 45555
Q ss_pred cc---ccCCCCeEeCcCCc
Q 002556 772 LV---KLCGLGVLDLSYNN 787 (908)
Q Consensus 772 l~---~L~~L~~L~ls~N~ 787 (908)
+. ...-.++|+..-++
T Consensus 253 IC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 253 ICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred HHhccceeeeeeecchhcc
Confidence 43 33445677777764
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.26 E-value=1.8e-13 Score=147.41 Aligned_cols=194 Identities=30% Similarity=0.432 Sum_probs=168.0
Q ss_pred ccceEEEccCCcccCcCCcccccCCCCCEEECCCCcCcccCCCCcCCCCCccEEEccCccccccCCcCccCCCCCcEEEc
Q 002556 509 NTWNIFDLSSNLLSGELPDCWLNFNSLFILNLANNSFSGKIPDSMGFLHNIRTLSLNNNRLTRELPSSLKNCSQLRVLDL 588 (908)
Q Consensus 509 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 588 (908)
..-...|++.|++. ++|..++.+..|+.+.|..|.+. .+|..++.+..|++|+|+.|+++ .+|..+..|+ |+.|-+
T Consensus 75 tdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~ 150 (722)
T KOG0532|consen 75 TDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIV 150 (722)
T ss_pred cchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEE
Confidence 33467899999998 78888888999999999999998 88999999999999999999998 6888887764 999999
Q ss_pred cCCcccccCchhhhhcccccceeecCCCccccccchhhhcCCCCCEEEccCCCCCcCchhhhccccccccccCCCccccc
Q 002556 589 RNNALFGEIPIWIGGNLQNLIVLSLKSNNFHGNIPFQLCYLAFIQVLDLSLNNISGKIPKCFSNFSTMIQERSSDPIIGM 668 (908)
Q Consensus 589 s~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~~~~~~~~~~~ 668 (908)
++|+++ .+|..++ .++.|..||.+.|.+. .+|..++.+.+|+.|+++.|++. .+|+++..++
T Consensus 151 sNNkl~-~lp~~ig-~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp-------------- 212 (722)
T KOG0532|consen 151 SNNKLT-SLPEEIG-LLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP-------------- 212 (722)
T ss_pred ecCccc-cCCcccc-cchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc--------------
Confidence 999997 8999998 7999999999999998 78999999999999999999998 6666665332
Q ss_pred ccceeccCCccccccccceeEEeeeccccccccccccccEEEccCCcccccchhhhhccccCceEeccCCcccccCCccc
Q 002556 669 ANRIWVLPGYVYQYRYLDNILLTWKGSEHEYKSTLGFVKCLDLSSNKLCGPILEEIMDLDGLIALNLSRNNLTGPISPKI 748 (908)
Q Consensus 669 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l 748 (908)
|..||+|+|+++ .||-+|..|+.|++|-|.+|.|. ..|..+
T Consensus 213 -------------------------------------Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqI 253 (722)
T KOG0532|consen 213 -------------------------------------LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQI 253 (722)
T ss_pred -------------------------------------eeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHH
Confidence 368999999998 79999999999999999999998 566654
Q ss_pred ---CCCCCCCEEeCCCCc
Q 002556 749 ---GQLKSLDFLDLSRNH 763 (908)
Q Consensus 749 ---~~l~~L~~L~Ls~N~ 763 (908)
|...--++|+..-++
T Consensus 254 C~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 254 CEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred Hhccceeeeeeecchhcc
Confidence 444556788888775
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.24 E-value=1.1e-11 Score=139.96 Aligned_cols=83 Identities=43% Similarity=0.598 Sum_probs=42.8
Q ss_pred cEEEccCCcccccchhhhhccccCceEeccCCcccccCCcccCCCCCCCEEeCCCCcccccCCccccccCCCCeEeCcCC
Q 002556 707 KCLDLSSNKLCGPILEEIMDLDGLIALNLSRNNLTGPISPKIGQLKSLDFLDLSRNHFSGSIPSSLVKLCGLGVLDLSYN 786 (908)
Q Consensus 707 ~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~ls~N 786 (908)
++|++++|++. .++..+..+..+..|.+++|++. .++..++.+++++.|++++|+++. ++. ++.+..++.|++++|
T Consensus 212 ~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~-i~~-~~~~~~l~~L~~s~n 287 (394)
T COG4886 212 EELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISS-ISS-LGSLTNLRELDLSGN 287 (394)
T ss_pred hhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceeccccccccc-ccc-ccccCccCEEeccCc
Confidence 34444444322 23444555555555555555554 224555555556666666666552 222 555555666666666
Q ss_pred cccccCC
Q 002556 787 NLSGKIP 793 (908)
Q Consensus 787 ~l~g~iP 793 (908)
.++...|
T Consensus 288 ~~~~~~~ 294 (394)
T COG4886 288 SLSNALP 294 (394)
T ss_pred cccccch
Confidence 5555444
No 28
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.20 E-value=1.9e-11 Score=138.19 Aligned_cols=201 Identities=36% Similarity=0.557 Sum_probs=146.5
Q ss_pred EEEccCCcccCcCCcccccCCCCCEEECCCCcCcccCCCCcCCCC-CccEEEccCccccccCCcCccCCCCCcEEEccCC
Q 002556 513 IFDLSSNLLSGELPDCWLNFNSLFILNLANNSFSGKIPDSMGFLH-NIRTLSLNNNRLTRELPSSLKNCSQLRVLDLRNN 591 (908)
Q Consensus 513 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 591 (908)
.++++.|.+...+ ..+..++.++.|++.+|.++ .++....... +|+.|++++|++. .+|..+..+++|+.|++++|
T Consensus 97 ~l~~~~~~~~~~~-~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRSNI-SELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccccCc-hhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence 4566666653222 23344567888888888888 5565666664 8888888888887 56667788888888888888
Q ss_pred cccccCchhhhhcccccceeecCCCccccccchhhhcCCCCCEEEccCCCCCcCchhhhccccccccccCCCcccccccc
Q 002556 592 ALFGEIPIWIGGNLQNLIVLSLKSNNFHGNIPFQLCYLAFIQVLDLSLNNISGKIPKCFSNFSTMIQERSSDPIIGMANR 671 (908)
Q Consensus 592 ~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~~~~~~~~~~~~~~ 671 (908)
+++ .+|.... ..++|+.|++++|++. .+|..+..+..|++|.+++|++. .++..+.++..
T Consensus 174 ~l~-~l~~~~~-~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~---------------- 233 (394)
T COG4886 174 DLS-DLPKLLS-NLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKN---------------- 233 (394)
T ss_pred hhh-hhhhhhh-hhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhccc----------------
Confidence 887 6666553 5788888888888888 66776666677888888888643 33333433333
Q ss_pred eeccCCccccccccceeEEeeeccccccccccccccEEEccCCcccccchhhhhccccCceEeccCCcccccCCcccCCC
Q 002556 672 IWVLPGYVYQYRYLDNILLTWKGSEHEYKSTLGFVKCLDLSSNKLCGPILEEIMDLDGLIALNLSRNNLTGPISPKIGQL 751 (908)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l 751 (908)
+..+.+++|++.. ++..++.+++++.|++++|.++. ++. ++.+
T Consensus 234 ----------------------------------l~~l~l~~n~~~~-~~~~~~~l~~l~~L~~s~n~i~~-i~~-~~~~ 276 (394)
T COG4886 234 ----------------------------------LSGLELSNNKLED-LPESIGNLSNLETLDLSNNQISS-ISS-LGSL 276 (394)
T ss_pred ----------------------------------ccccccCCceeee-ccchhccccccceeccccccccc-ccc-cccc
Confidence 3556677887763 36778888999999999999984 444 8999
Q ss_pred CCCCEEeCCCCcccccCCcccc
Q 002556 752 KSLDFLDLSRNHFSGSIPSSLV 773 (908)
Q Consensus 752 ~~L~~L~Ls~N~l~~~ip~~l~ 773 (908)
.+++.||+++|.++...|....
T Consensus 277 ~~l~~L~~s~n~~~~~~~~~~~ 298 (394)
T COG4886 277 TNLRELDLSGNSLSNALPLIAL 298 (394)
T ss_pred CccCEEeccCccccccchhhhc
Confidence 9999999999999977765543
No 29
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.11 E-value=5.2e-11 Score=121.96 Aligned_cols=249 Identities=23% Similarity=0.241 Sum_probs=120.0
Q ss_pred CCeEEEeecCCCcccchhhhhHHhhcCCCCCcEEecCCCcCCCC--------CchhHhhcCCCCCCEEEccCCCCCCCCC
Q 002556 109 GHVKVLNLRTSDYEFARRKFLKEWLSHLSSLRHLDLSCVNLTKS--------SDWFQVVANLHYLKSLVLRSCALPPINP 180 (908)
Q Consensus 109 ~~v~~l~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~--------~~~~~~l~~l~~L~~L~Ls~n~l~~~~~ 180 (908)
..++.|+|++|.+.-.........+.+.++|+..++|+--.... .-+.+.+..+++|++||||+|.+....+
T Consensus 30 ~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~ 109 (382)
T KOG1909|consen 30 DSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGI 109 (382)
T ss_pred CceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccch
Confidence 35788888888776544444456677777888887775432211 1123444556677777777776654333
Q ss_pred Ccccccc---ccCcccEEEcCCCCCCCCCchhhhhhccCCccEEEcccccCCCCccHhhhcCCCCcEEEccCCcCCCC--
Q 002556 181 SFIWHFN---LSTSIETLDLFDNNLPSSSVYPWFLNLSRNILHLNLASNSLQGPIPEAFQHMVSLRFLALSSNELEGG-- 255 (908)
Q Consensus 181 ~~~~l~~---l~~~L~~LdLs~n~l~~~~~p~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-- 255 (908)
..+.. -+..|++|.|.+|.+.. .--..++. .|.+|. ...-.+.-+.|+++....|++...
T Consensus 110 --~~l~~ll~s~~~L~eL~L~N~Glg~-~ag~~l~~---al~~l~---------~~kk~~~~~~Lrv~i~~rNrlen~ga 174 (382)
T KOG1909|consen 110 --RGLEELLSSCTDLEELYLNNCGLGP-EAGGRLGR---ALFELA---------VNKKAASKPKLRVFICGRNRLENGGA 174 (382)
T ss_pred --HHHHHHHHhccCHHHHhhhcCCCCh-hHHHHHHH---HHHHHH---------HHhccCCCcceEEEEeeccccccccH
Confidence 22221 13566666666665532 10011110 000000 000011223444444444444321
Q ss_pred --ccccccCCCCCCEEEccCCCCccc----hhhHHhhccCCCCCCCcCEEEccCCcCccCCC----C-CCCCCCCcEEEc
Q 002556 256 --IPKFFGNMCSLNELYLLNNKLSGQ----LSEFIQNLSSGCTVNSLEGLCLYDNDITGPIP----D-LGGFSSLKELYL 324 (908)
Q Consensus 256 --~p~~l~~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~~~~l~~L~~L~L~~n~l~~~~~----~-l~~l~~L~~L~L 324 (908)
+...|...+.|+.+.++.|.+... +...+..++ +|++|||.+|.++.... . +..+++|++|++
T Consensus 175 ~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~------~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l 248 (382)
T KOG1909|consen 175 TALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCP------HLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNL 248 (382)
T ss_pred HHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCC------cceeeecccchhhhHHHHHHHHHhcccchheeecc
Confidence 112233444444554444444211 122233333 55555555554432111 1 445556666666
Q ss_pred cCccCCCcccccc-----ccCCCCCEEECCCCcccCc---cChhhhcCCCCCCEEECCCCCC
Q 002556 325 GENSLNGTINKSL-----NHLFKLETLSLDGNSFTGV---ISETFFSNMSNLQMLYLANNPL 378 (908)
Q Consensus 325 s~n~l~~~~~~~l-----~~l~~L~~L~L~~n~l~~~---~~~~~l~~l~~L~~L~L~~n~l 378 (908)
++|.+...-...+ ...++|++|.+.+|.++.. .-.......+.|+.|+|++|.+
T Consensus 249 ~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 249 GDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred cccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 6666654332222 1356677777777766521 1111244567777777777776
No 30
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=4.1e-11 Score=125.90 Aligned_cols=212 Identities=24% Similarity=0.186 Sum_probs=105.3
Q ss_pred CCCCCcEEecCCCcCCCCCchhHhhcCCCCCCEEEccCCCCCCCCCCccccccccCcccEEEcCCCCCCCCCchhhhhhc
Q 002556 135 HLSSLRHLDLSCVNLTKSSDWFQVVANLHYLKSLVLRSCALPPINPSFIWHFNLSTSIETLDLFDNNLPSSSVYPWFLNL 214 (908)
Q Consensus 135 ~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~~L~~LdLs~n~l~~~~~p~~~~~l 214 (908)
++..|+...|.++....... -.....|++++.||||.|-+....+-..-+..+ |+|+.|+|+.|.+.. ..-......
T Consensus 119 n~kkL~~IsLdn~~V~~~~~-~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqL-p~Le~LNls~Nrl~~-~~~s~~~~~ 195 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGI-EEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQL-PSLENLNLSSNRLSN-FISSNTTLL 195 (505)
T ss_pred hHHhhhheeecCccccccch-hhhhhhCCcceeecchhhhHHhHHHHHHHHHhc-ccchhcccccccccC-Cccccchhh
Confidence 45555555555555543210 023445555566666655544433321111223 556666666655533 111111112
Q ss_pred cCCccEEEcccccCCCC-ccHhhhcCCCCcEEEccCCcCCCCccccccCCCCCCEEEccCCCCccch-hhHHhhccCCCC
Q 002556 215 SRNILHLNLASNSLQGP-IPEAFQHMVSLRFLALSSNELEGGIPKFFGNMCSLNELYLLNNKLSGQL-SEFIQNLSSGCT 292 (908)
Q Consensus 215 ~~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~l~~~~~ 292 (908)
.++|+.|.|+.|.++.. +......+|+|+.|+|.+|.....-.....-+..|+.|||++|++-... -...+.++
T Consensus 196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~---- 271 (505)
T KOG3207|consen 196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLP---- 271 (505)
T ss_pred hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccccccccccccccc----
Confidence 22566666666665522 2223345566666666666422222233344556666666666553221 12233333
Q ss_pred CCCcCEEEccCCcCccC-CCC------CCCCCCCcEEEccCccCCCc-cccccccCCCCCEEECCCCcccC
Q 002556 293 VNSLEGLCLYDNDITGP-IPD------LGGFSSLKELYLGENSLNGT-INKSLNHLFKLETLSLDGNSFTG 355 (908)
Q Consensus 293 l~~L~~L~L~~n~l~~~-~~~------l~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~ 355 (908)
.|+.|.++.+.++.. .|+ ...+++|++|++..|++..- .-..+..+++|+.|.+..|.++.
T Consensus 272 --~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 272 --GLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred --chhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence 566666666655432 122 24567888888888887421 11234556677777777777763
No 31
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.05 E-value=5.1e-11 Score=118.78 Aligned_cols=206 Identities=25% Similarity=0.232 Sum_probs=125.7
Q ss_pred ccccCCCCCEEECCCCcCcccCCCCcCCCCCccEEEccCccccccCCcCccCCCCCcEEEccC-CcccccCchhhhhccc
Q 002556 528 CWLNFNSLFILNLANNSFSGKIPDSMGFLHNIRTLSLNNNRLTRELPSSLKNCSQLRVLDLRN-NALFGEIPIWIGGNLQ 606 (908)
Q Consensus 528 ~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~-N~l~~~ip~~~~~~l~ 606 (908)
.+..+++|..+.+|.+.-.. |-+....-+.|+++...+..++. .|. +--...+....-+. .-.+|..-..+. ..+
T Consensus 209 ~l~~f~~l~~~~~s~~~~~~-i~~~~~~kptl~t~~v~~s~~~~-~~~-l~pe~~~~D~~~~E~~t~~G~~~~~~d-TWq 284 (490)
T KOG1259|consen 209 NLNAFRNLKTLKFSALSTEN-IVDIELLKPTLQTICVHNTTIQD-VPS-LLPETILADPSGSEPSTSNGSALVSAD-TWQ 284 (490)
T ss_pred chHHhhhhheeeeeccchhh-eeceeecCchhheeeeecccccc-ccc-ccchhhhcCccCCCCCccCCceEEecc-hHh
Confidence 34445667777777665431 22222233567777776655441 111 11111111111100 111222222222 345
Q ss_pred ccceeecCCCccccccchhhhcCCCCCEEEccCCCCCcCchhhhccccccccccCCCcccccccceeccCCccccccccc
Q 002556 607 NLIVLSLKSNNFHGNIPFQLCYLAFIQVLDLSLNNISGKIPKCFSNFSTMIQERSSDPIIGMANRIWVLPGYVYQYRYLD 686 (908)
Q Consensus 607 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 686 (908)
.|+++||++|.|+ .+.+++.-+|.++.|++|+|.+.. ++++
T Consensus 285 ~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~-----v~nL--------------------------------- 325 (490)
T KOG1259|consen 285 ELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRT-----VQNL--------------------------------- 325 (490)
T ss_pred hhhhccccccchh-hhhhhhhhccceeEEeccccceee-----ehhh---------------------------------
Confidence 6888888888887 566777778888888888888761 1121
Q ss_pred eeEEeeeccccccccccccccEEEccCCcccccchhhhhccccCceEeccCCcccccCCcccCCCCCCCEEeCCCCcccc
Q 002556 687 NILLTWKGSEHEYKSTLGFVKCLDLSSNKLCGPILEEIMDLDGLIALNLSRNNLTGPISPKIGQLKSLDFLDLSRNHFSG 766 (908)
Q Consensus 687 ~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~ 766 (908)
..+++|+.||||+|.++. +...-..+-+.+.|.|+.|.+... ..++.+-+|..||+++|++..
T Consensus 326 --------------a~L~~L~~LDLS~N~Ls~-~~Gwh~KLGNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ 388 (490)
T KOG1259|consen 326 --------------AELPQLQLLDLSGNLLAE-CVGWHLKLGNIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEE 388 (490)
T ss_pred --------------hhcccceEeecccchhHh-hhhhHhhhcCEeeeehhhhhHhhh--hhhHhhhhheeccccccchhh
Confidence 123455788888888873 333445677888899999988643 568888899999999998874
Q ss_pred cC-CccccccCCCCeEeCcCCcccccCC
Q 002556 767 SI-PSSLVKLCGLGVLDLSYNNLSGKIP 793 (908)
Q Consensus 767 ~i-p~~l~~L~~L~~L~ls~N~l~g~iP 793 (908)
.. -..+++|+.|+.+.+.+|++.+.+.
T Consensus 389 ldeV~~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 389 LDEVNHIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred HHHhcccccccHHHHHhhcCCCccccch
Confidence 32 2568889999999999999997543
No 32
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.04 E-value=9.8e-11 Score=119.99 Aligned_cols=40 Identities=28% Similarity=0.313 Sum_probs=25.9
Q ss_pred hcCCCCCcEEecCCCcCCCC--CchhHhhcCCCCCCEEEccC
Q 002556 133 LSHLSSLRHLDLSCVNLTKS--SDWFQVVANLHYLKSLVLRS 172 (908)
Q Consensus 133 l~~l~~L~~L~Ls~n~l~~~--~~~~~~l~~l~~L~~L~Ls~ 172 (908)
+..+..++.++||+|.+... ..+.+.+.+.+.|+..++++
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd 67 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSD 67 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHh
Confidence 55677788888888877542 22345556666666666664
No 33
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.00 E-value=7.1e-11 Score=117.74 Aligned_cols=132 Identities=24% Similarity=0.259 Sum_probs=76.9
Q ss_pred cCCCCcEEEccCCcCCCCccccccCCCCCCEEEccCCCCccchhhHHhhccCCCCCCCcCEEEccCCcCccCCCCCCCCC
Q 002556 238 HMVSLRFLALSSNELEGGIPKFFGNMCSLNELYLLNNKLSGQLSEFIQNLSSGCTVNSLEGLCLYDNDITGPIPDLGGFS 317 (908)
Q Consensus 238 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~l~~L~~L~L~~n~l~~~~~~l~~l~ 317 (908)
....|+++|||+|.|+ .+.++..-.+.++.|++++|.+... ..+..++ +|+.|||++|.++.....-.++.
T Consensus 282 TWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~------~L~~LDLS~N~Ls~~~Gwh~KLG 352 (490)
T KOG1259|consen 282 TWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELP------QLQLLDLSGNLLAECVGWHLKLG 352 (490)
T ss_pred hHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcc------cceEeecccchhHhhhhhHhhhc
Confidence 3455667777777666 4455566666777777777766532 2244455 66666666666654333233455
Q ss_pred CCcEEEccCccCCCccccccccCCCCCEEECCCCcccCccChhhhcCCCCCCEEECCCCCCcc
Q 002556 318 SLKELYLGENSLNGTINKSLNHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLYLANNPLTM 380 (908)
Q Consensus 318 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~ 380 (908)
++++|.|++|.+... ..++++-+|..||+++|++...-....++++|-|+.+.|.+|++.+
T Consensus 353 NIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 353 NIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred CEeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 666666666666422 3455566666667776666533322335666666666666666553
No 34
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=9.4e-11 Score=123.24 Aligned_cols=213 Identities=23% Similarity=0.202 Sum_probs=122.3
Q ss_pred hhcCCCCCCEEEccCCCCCCCCCCccccccccCcccEEEcCCCCCCCCCchhhh-hhccCCccEEEcccccCCCCccHh-
Q 002556 158 VVANLHYLKSLVLRSCALPPINPSFIWHFNLSTSIETLDLFDNNLPSSSVYPWF-LNLSRNILHLNLASNSLQGPIPEA- 235 (908)
Q Consensus 158 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~~L~~LdLs~n~l~~~~~p~~~-~~l~~~L~~L~Ls~n~l~~~~p~~- 235 (908)
.=.++.+|+.+.|.++........ .....+ ++++.||||.|-+..+.....+ ..++ +|+.|+|+.|.+.......
T Consensus 116 kQsn~kkL~~IsLdn~~V~~~~~~-~~~k~~-~~v~~LdLS~NL~~nw~~v~~i~eqLp-~Le~LNls~Nrl~~~~~s~~ 192 (505)
T KOG3207|consen 116 KQSNLKKLREISLDNYRVEDAGIE-EYSKIL-PNVRDLDLSRNLFHNWFPVLKIAEQLP-SLENLNLSSNRLSNFISSNT 192 (505)
T ss_pred HhhhHHhhhheeecCccccccchh-hhhhhC-CcceeecchhhhHHhHHHHHHHHHhcc-cchhcccccccccCCccccc
Confidence 335688899999998877654321 122334 8888888888877653333333 3344 8888888888776332221
Q ss_pred hhcCCCCcEEEccCCcCCCCc-cccccCCCCCCEEEccCCCCccchhhHHhhccCCCCCCCcCEEEccCCcCccCC--CC
Q 002556 236 FQHMVSLRFLALSSNELEGGI-PKFFGNMCSLNELYLLNNKLSGQLSEFIQNLSSGCTVNSLEGLCLYDNDITGPI--PD 312 (908)
Q Consensus 236 l~~l~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~l~~L~~L~L~~n~l~~~~--~~ 312 (908)
-..++.|+.|.|+.|.++-.- -.....+++|+.|+|..|.....-......+. .|+.|+|++|++.... +.
T Consensus 193 ~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~------~L~~LdLs~N~li~~~~~~~ 266 (505)
T KOG3207|consen 193 TLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQ------TLQELDLSNNNLIDFDQGYK 266 (505)
T ss_pred hhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhh------HHhhccccCCcccccccccc
Confidence 135667777777777776321 12234667777777777742222222222333 6777777777765433 33
Q ss_pred CCCCCCCcEEEccCccCCCcc-ccc-----cccCCCCCEEECCCCcccCccChhhhcCCCCCCEEECCCCCCc
Q 002556 313 LGGFSSLKELYLGENSLNGTI-NKS-----LNHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLYLANNPLT 379 (908)
Q Consensus 313 l~~l~~L~~L~Ls~n~l~~~~-~~~-----l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~ 379 (908)
.+.++.|+.|+++.+.+...- |+. ...+++|+.|++..|++...-.-..+..+++|+.|.+..|.+.
T Consensus 267 ~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 267 VGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred cccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 667777777777777665432 111 2345666777777666642211112334445555555555544
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.89 E-value=1.8e-09 Score=104.35 Aligned_cols=104 Identities=27% Similarity=0.321 Sum_probs=29.1
Q ss_pred CccEEEcccccCCCCccHhhh-cCCCCcEEEccCCcCCCCccccccCCCCCCEEEccCCCCccchhhHHhhccCCCCCCC
Q 002556 217 NILHLNLASNSLQGPIPEAFQ-HMVSLRFLALSSNELEGGIPKFFGNMCSLNELYLLNNKLSGQLSEFIQNLSSGCTVNS 295 (908)
Q Consensus 217 ~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~l~~ 295 (908)
++++|+|++|.|+.. +.++ .+.+|+.|+|++|.|+.. +.+..++.|++|++++|+++...+.....++ +
T Consensus 20 ~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp------~ 89 (175)
T PF14580_consen 20 KLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISEGLDKNLP------N 89 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-T------T
T ss_pred ccccccccccccccc--cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccccchHHhCC------c
Confidence 567777777777632 2344 466777777777777743 3466677777777777777654332223455 6
Q ss_pred cCEEEccCCcCccCCC--CCCCCCCCcEEEccCccCC
Q 002556 296 LEGLCLYDNDITGPIP--DLGGFSSLKELYLGENSLN 330 (908)
Q Consensus 296 L~~L~L~~n~l~~~~~--~l~~l~~L~~L~Ls~n~l~ 330 (908)
|++|++++|++...-. .+..+++|+.|++.+|.++
T Consensus 90 L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 90 LQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp --EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred CCEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 6666666666643211 1444555555555555543
No 36
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.88 E-value=3e-09 Score=102.92 Aligned_cols=108 Identities=23% Similarity=0.256 Sum_probs=30.2
Q ss_pred CCCCCCEEEccCCCCCCCCCCccccccccCcccEEEcCCCCCCCCCchhhhhhccCCccEEEcccccCCCCccHhh-hcC
Q 002556 161 NLHYLKSLVLRSCALPPINPSFIWHFNLSTSIETLDLFDNNLPSSSVYPWFLNLSRNILHLNLASNSLQGPIPEAF-QHM 239 (908)
Q Consensus 161 ~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~~L~~LdLs~n~l~~~~~p~~~~~l~~~L~~L~Ls~n~l~~~~p~~l-~~l 239 (908)
+..++++|+|++|.|+.+. .+...+.+|+.||+++|.+.. ...+..+. +|++|++++|.++.. ++.+ ..+
T Consensus 17 n~~~~~~L~L~~n~I~~Ie----~L~~~l~~L~~L~Ls~N~I~~---l~~l~~L~-~L~~L~L~~N~I~~i-~~~l~~~l 87 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIE----NLGATLDKLEVLDLSNNQITK---LEGLPGLP-RLKTLDLSNNRISSI-SEGLDKNL 87 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S-----TT----T-T--EEE--SS---S--CHHHHHH-
T ss_pred ccccccccccccccccccc----chhhhhcCCCEEECCCCCCcc---ccCccChh-hhhhcccCCCCCCcc-ccchHHhC
Confidence 4445566666666655432 233211566666666666644 22344455 677777777777643 3333 356
Q ss_pred CCCcEEEccCCcCCCCc-cccccCCCCCCEEEccCCCCc
Q 002556 240 VSLRFLALSSNELEGGI-PKFFGNMCSLNELYLLNNKLS 277 (908)
Q Consensus 240 ~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~Ls~n~l~ 277 (908)
++|++|++++|+|...- -..+..+++|++|++.+|.++
T Consensus 88 p~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 88 PNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred CcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 77777777777665321 123556666667776666655
No 37
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.76 E-value=7.3e-09 Score=75.15 Aligned_cols=40 Identities=48% Similarity=1.024 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHhcCc-cCcCCCCCCCCCCC-CCCCCCccccccC
Q 002556 64 DEEREALLTFRQSLV-DEYGILSSWGREDG-KRDCCKWRGVRCS 105 (908)
Q Consensus 64 ~~~~~aLl~~k~~~~-~~~~~l~~W~~~~~-~~~~C~w~gv~C~ 105 (908)
++|++||++||+++. +|.+.+.+|+. . ..+||+|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~--~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWNP--SSDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT--T--T--S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCCC--cCCCCCeeeccEEeC
Confidence 679999999999998 57789999984 2 2799999999995
No 38
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.74 E-value=5.6e-09 Score=82.93 Aligned_cols=60 Identities=40% Similarity=0.502 Sum_probs=32.5
Q ss_pred cCceEeccCCcccccCCcccCCCCCCCEEeCCCCcccccCCccccccCCCCeEeCcCCcc
Q 002556 729 GLIALNLSRNNLTGPISPKIGQLKSLDFLDLSRNHFSGSIPSSLVKLCGLGVLDLSYNNL 788 (908)
Q Consensus 729 ~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~ls~N~l 788 (908)
+|++|++++|+++...+..|.++++|++|++++|+++...|..|.++++|++|++++|+|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 445555555555544444555555555555555555555555555555555555555543
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.71 E-value=9.5e-09 Score=81.59 Aligned_cols=61 Identities=38% Similarity=0.468 Sum_probs=57.0
Q ss_pred ccccEEEccCCcccccchhhhhccccCceEeccCCcccccCCcccCCCCCCCEEeCCCCcc
Q 002556 704 GFVKCLDLSSNKLCGPILEEIMDLDGLIALNLSRNNLTGPISPKIGQLKSLDFLDLSRNHF 764 (908)
Q Consensus 704 ~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l 764 (908)
++|+.|++++|+++...+..|..+++|++|++++|+++...|..|.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 3578999999999988888999999999999999999988888999999999999999986
No 40
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.69 E-value=2.3e-09 Score=121.32 Aligned_cols=78 Identities=33% Similarity=0.314 Sum_probs=48.5
Q ss_pred cEEEccCCcccccchhhhhccc--cCceEeccCCcccccCCcccCCCCCCCEEeCCCCcccccCCccccccCCCCeEeCc
Q 002556 707 KCLDLSSNKLCGPILEEIMDLD--GLIALNLSRNNLTGPISPKIGQLKSLDFLDLSRNHFSGSIPSSLVKLCGLGVLDLS 784 (908)
Q Consensus 707 ~~L~Ls~N~l~~~ip~~l~~l~--~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~ls 784 (908)
..+++..|.++-.-+ +..+. .|+.+++++|.+. .++..+..++.++.||+++|++... ..+.....+..+...
T Consensus 211 ~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~ 285 (414)
T KOG0531|consen 211 VLLSLLDNKISKLEG--LNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLN 285 (414)
T ss_pred HHhhcccccceeccC--cccchhHHHHHHhcccCccc-cccccccccccccccchhhcccccc--ccccccchHHHhccC
Confidence 344666777653322 22223 2777888888877 4446677777888888888877743 234455566666677
Q ss_pred CCccc
Q 002556 785 YNNLS 789 (908)
Q Consensus 785 ~N~l~ 789 (908)
.|.+.
T Consensus 286 ~~~~~ 290 (414)
T KOG0531|consen 286 DNKLA 290 (414)
T ss_pred cchhc
Confidence 77665
No 41
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.67 E-value=3.8e-09 Score=119.55 Aligned_cols=222 Identities=23% Similarity=0.215 Sum_probs=128.8
Q ss_pred ccceEEEccCCcccCcCCcccccCCCCCEEECCCCcCcccCCCCcCCCCCccEEEccCccccccCCcCccCCCCCcEEEc
Q 002556 509 NTWNIFDLSSNLLSGELPDCWLNFNSLFILNLANNSFSGKIPDSMGFLHNIRTLSLNNNRLTRELPSSLKNCSQLRVLDL 588 (908)
Q Consensus 509 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 588 (908)
.+++.+++.+|++..... .+..+++|++|++++|.|+... .+..++.|+.|++++|.++. ...+..++.|+.+++
T Consensus 95 ~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~~--~~~~~~l~~L~~l~l 169 (414)
T KOG0531|consen 95 KSLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLISD--ISGLESLKSLKLLDL 169 (414)
T ss_pred cceeeeeccccchhhccc-chhhhhcchheecccccccccc--chhhccchhhheeccCcchh--ccCCccchhhhcccC
Confidence 455555666665553221 1445556666666666665332 24445556666666666652 123444556666666
Q ss_pred cCCcccccCchhhhhcccccceeecCCCccccccchhhhcCCCCCEEEccCCCCCcCchhhhccccccccccCCCccccc
Q 002556 589 RNNALFGEIPIWIGGNLQNLIVLSLKSNNFHGNIPFQLCYLAFIQVLDLSLNNISGKIPKCFSNFSTMIQERSSDPIIGM 668 (908)
Q Consensus 589 s~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L~~~~~~~~~~~~ 668 (908)
++|++...-+... ..+.+++.+++.+|.+... ..+..+..+..+++..|.++-.-+ +
T Consensus 170 ~~n~i~~ie~~~~-~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i~~~~~--------l------------ 226 (414)
T KOG0531|consen 170 SYNRIVDIENDEL-SELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKISKLEG--------L------------ 226 (414)
T ss_pred Ccchhhhhhhhhh-hhccchHHHhccCCchhcc--cchHHHHHHHHhhcccccceeccC--------c------------
Confidence 6666552222001 1355566666666655421 222233333444555555441110 0
Q ss_pred ccceeccCCccccccccceeEEeeeccccccccccc--cccEEEccCCcccccchhhhhccccCceEeccCCcccccCCc
Q 002556 669 ANRIWVLPGYVYQYRYLDNILLTWKGSEHEYKSTLG--FVKCLDLSSNKLCGPILEEIMDLDGLIALNLSRNNLTGPISP 746 (908)
Q Consensus 669 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~ 746 (908)
..+. +|+.+++++|++.. ++..+..+..+..|++++|++... .
T Consensus 227 --------------------------------~~~~~~~L~~l~l~~n~i~~-~~~~~~~~~~l~~l~~~~n~~~~~--~ 271 (414)
T KOG0531|consen 227 --------------------------------NELVMLHLRELYLSGNRISR-SPEGLENLKNLPVLDLSSNRISNL--E 271 (414)
T ss_pred --------------------------------ccchhHHHHHHhcccCcccc-ccccccccccccccchhhcccccc--c
Confidence 0011 36889999999873 346677888999999999999855 4
Q ss_pred ccCCCCCCCEEeCCCCccccc---CCcc-ccccCCCCeEeCcCCcccccCC
Q 002556 747 KIGQLKSLDFLDLSRNHFSGS---IPSS-LVKLCGLGVLDLSYNNLSGKIP 793 (908)
Q Consensus 747 ~l~~l~~L~~L~Ls~N~l~~~---ip~~-l~~L~~L~~L~ls~N~l~g~iP 793 (908)
.+.....+..+..+.|.+... .... ......+..+.+.+|+.....+
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (414)
T KOG0531|consen 272 GLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISS 322 (414)
T ss_pred cccccchHHHhccCcchhcchhhhhccccccccccccccccccCccccccc
Confidence 567778888889999987722 2222 4556788899999999887665
No 42
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.66 E-value=3.3e-08 Score=119.42 Aligned_cols=272 Identities=23% Similarity=0.256 Sum_probs=148.1
Q ss_pred CCCcEEecCCCcCCCCCchhHhhcCCCCCCEEEccCCC--CCCCCCCccccccccCcccEEEcCCCCCCCCCchhhhhhc
Q 002556 137 SSLRHLDLSCVNLTKSSDWFQVVANLHYLKSLVLRSCA--LPPINPSFIWHFNLSTSIETLDLFDNNLPSSSVYPWFLNL 214 (908)
Q Consensus 137 ~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~--l~~~~~~~~~l~~l~~~L~~LdLs~n~l~~~~~p~~~~~l 214 (908)
...|...+-+|.+... ..-..+++|++|-+..|. +..... ..+..+ +.|++|||++|.=-+ .+|..++.+
T Consensus 523 ~~~rr~s~~~~~~~~~----~~~~~~~~L~tLll~~n~~~l~~is~--~ff~~m-~~LrVLDLs~~~~l~-~LP~~I~~L 594 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEHI----AGSSENPKLRTLLLQRNSDWLLEISG--EFFRSL-PLLRVLDLSGNSSLS-KLPSSIGEL 594 (889)
T ss_pred hheeEEEEeccchhhc----cCCCCCCccceEEEeecchhhhhcCH--HHHhhC-cceEEEECCCCCccC-cCChHHhhh
Confidence 4555555555555432 112234578888888775 333222 223345 888888888866555 788888888
Q ss_pred cCCccEEEcccccCCCCccHhhhcCCCCcEEEccCCcCCCCccccccCCCCCCEEEccCCCC--ccchhhHHhhccCCCC
Q 002556 215 SRNILHLNLASNSLQGPIPEAFQHMVSLRFLALSSNELEGGIPKFFGNMCSLNELYLLNNKL--SGQLSEFIQNLSSGCT 292 (908)
Q Consensus 215 ~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l--~~~~~~~l~~l~~~~~ 292 (908)
. +|++|+++++.+. .+|..+++++.|.+|++..+.....+|.....+++|++|.+..... +...-..+..+.
T Consensus 595 i-~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le---- 668 (889)
T KOG4658|consen 595 V-HLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLE---- 668 (889)
T ss_pred h-hhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhccc----
Confidence 8 8888888888887 7888888888888888888876656677777788888888866542 122222233333
Q ss_pred CCCcCEEEccCCcCccCCCCCCCCCCCc----EEEccCccCCCccccccccCCCCCEEECCCCcccCccChhhhcC----
Q 002556 293 VNSLEGLCLYDNDITGPIPDLGGFSSLK----ELYLGENSLNGTINKSLNHLFKLETLSLDGNSFTGVISETFFSN---- 364 (908)
Q Consensus 293 l~~L~~L~L~~n~l~~~~~~l~~l~~L~----~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~---- 364 (908)
+|+.+....... .....+..+..|. .+.+.++... ..+..+..+.+|+.|.+.++.+...... ....
T Consensus 669 --~L~~ls~~~~s~-~~~e~l~~~~~L~~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e~~~~-~~~~~~~~ 743 (889)
T KOG4658|consen 669 --HLENLSITISSV-LLLEDLLGMTRLRSLLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGISEIVIE-WEESLIVL 743 (889)
T ss_pred --chhhheeecchh-HhHhhhhhhHHHHHHhHhhhhcccccc-eeecccccccCcceEEEEcCCCchhhcc-cccccchh
Confidence 444444433322 1111122222222 2222222222 3344566677777777777765422110 1000
Q ss_pred --CCCCCEEECCCCCCccccCCCcCCCCCccEEEccCCCCCCChhHHhhcCccccEeeecCccccC
Q 002556 365 --MSNLQMLYLANNPLTMKLSHDWVPPFQLKWLSLASCKMGPNFPKWLRTQSQLILLDISNTGISG 428 (908)
Q Consensus 365 --l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~ 428 (908)
++++..+...++..... +....-.++|+.|.+..|.....+......+..+..+.+..+.+.+
T Consensus 744 ~~f~~l~~~~~~~~~~~r~-l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~ 808 (889)
T KOG4658|consen 744 LCFPNLSKVSILNCHMLRD-LTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEG 808 (889)
T ss_pred hhHHHHHHHHhhccccccc-cchhhccCcccEEEEecccccccCCCHHHHhhhcccEEeccccccc
Confidence 11222222222211111 1111234677777777776665555555555555555555555443
No 43
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.62 E-value=7.1e-08 Score=116.53 Aligned_cols=104 Identities=31% Similarity=0.302 Sum_probs=49.8
Q ss_pred CccEEEccccc--CCCCccHhhhcCCCCcEEEccCCcCCCCccccccCCCCCCEEEccCCCCccchhhHHhhccCCCCCC
Q 002556 217 NILHLNLASNS--LQGPIPEAFQHMVSLRFLALSSNELEGGIPKFFGNMCSLNELYLLNNKLSGQLSEFIQNLSSGCTVN 294 (908)
Q Consensus 217 ~L~~L~Ls~n~--l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~l~ 294 (908)
.|++|-+..|. +....++.|..++.|++|||++|.--+.+|..++++-+||+|++++..+. .+|..++++.
T Consensus 546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk------ 618 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLK------ 618 (889)
T ss_pred ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHH------
Confidence 34444444443 22222333444555555555554444445555555555555555555544 4455555554
Q ss_pred CcCEEEccCCcCccCCCC-CCCCCCCcEEEccCc
Q 002556 295 SLEGLCLYDNDITGPIPD-LGGFSSLKELYLGEN 327 (908)
Q Consensus 295 ~L~~L~L~~n~l~~~~~~-l~~l~~L~~L~Ls~n 327 (908)
.|.+|++..+.....+|. ...+++|++|.+...
T Consensus 619 ~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 619 KLIYLNLEVTGRLESIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred hhheeccccccccccccchhhhcccccEEEeecc
Confidence 555555554444333344 333555665555443
No 44
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.58 E-value=1.1e-09 Score=121.68 Aligned_cols=126 Identities=26% Similarity=0.307 Sum_probs=73.0
Q ss_pred CCcEEEccCCcCCCCccccccCCCCCCEEEccCCCCccchhhHHhhccCCCCCCCcCEEEccCCcCccCCCC--CCCCCC
Q 002556 241 SLRFLALSSNELEGGIPKFFGNMCSLNELYLLNNKLSGQLSEFIQNLSSGCTVNSLEGLCLYDNDITGPIPD--LGGFSS 318 (908)
Q Consensus 241 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~l~~L~~L~L~~n~l~~~~~~--l~~l~~ 318 (908)
.|.+.+.++|.+. .+..++.-++.|++|+|++|+++.. +.+..++ +|++|||+.|.+.. +|. ...+.
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~------~LkhLDlsyN~L~~-vp~l~~~gc~- 233 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLP------KLKHLDLSYNCLRH-VPQLSMVGCK- 233 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcc------cccccccccchhcc-ccccchhhhh-
Confidence 3555566666665 4445566666666666666666543 2455555 66666666666653 233 22233
Q ss_pred CcEEEccCccCCCccccccccCCCCCEEECCCCcccCccChhhhcCCCCCCEEECCCCCCc
Q 002556 319 LKELYLGENSLNGTINKSLNHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLYLANNPLT 379 (908)
Q Consensus 319 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~ 379 (908)
|+.|.+++|.++.. ..+.++++|+.||+++|-+.+.-.-..+..+..|+.|+|.+|++-
T Consensus 234 L~~L~lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 234 LQLLNLRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred heeeeecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 66677777766532 345666677777777776654333333555666666777776653
No 45
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=1.7e-08 Score=101.22 Aligned_cols=157 Identities=20% Similarity=0.196 Sum_probs=80.7
Q ss_pred CcccEEEcCCCCCCCCCchhhhhhccCCccEEEcccccCCCCccHhhhcCCCCcEEEccCCc-CCCC-ccccccCCCCCC
Q 002556 190 TSIETLDLFDNNLPSSSVYPWFLNLSRNILHLNLASNSLQGPIPEAFQHMVSLRFLALSSNE-LEGG-IPKFFGNMCSLN 267 (908)
Q Consensus 190 ~~L~~LdLs~n~l~~~~~p~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~-l~~~-~p~~l~~l~~L~ 267 (908)
++||+||||...++...+-.-+..+. +|+.|.|.++++...+...+++-.+|+.|+|+.+. ++.. ..-.+.+++.|+
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~-kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~ 263 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCS-KLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLD 263 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHH-hhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHh
Confidence 34777777766665422222334444 67777777777776666667777777777777653 3311 112245667777
Q ss_pred EEEccCCCCccchhh-HHhhccCCCCCCCcCEEEccCCcCcc---CCCC-CCCCCCCcEEEccCcc-CCCccccccccCC
Q 002556 268 ELYLLNNKLSGQLSE-FIQNLSSGCTVNSLEGLCLYDNDITG---PIPD-LGGFSSLKELYLGENS-LNGTINKSLNHLF 341 (908)
Q Consensus 268 ~L~Ls~n~l~~~~~~-~l~~l~~~~~l~~L~~L~L~~n~l~~---~~~~-l~~l~~L~~L~Ls~n~-l~~~~~~~l~~l~ 341 (908)
.|+++.|.++..... .+..... +|+.|+++++.-.- .+.. ...+++|.+|||++|. ++......|.+++
T Consensus 264 ~LNlsWc~l~~~~Vtv~V~hise-----~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~ 338 (419)
T KOG2120|consen 264 ELNLSWCFLFTEKVTVAVAHISE-----TLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFN 338 (419)
T ss_pred hcCchHhhccchhhhHHHhhhch-----hhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcc
Confidence 777777665533222 2222221 55566665543211 1111 2345555555555542 2322233344555
Q ss_pred CCCEEECCCCc
Q 002556 342 KLETLSLDGNS 352 (908)
Q Consensus 342 ~L~~L~L~~n~ 352 (908)
.|++|.++.|.
T Consensus 339 ~L~~lSlsRCY 349 (419)
T KOG2120|consen 339 YLQHLSLSRCY 349 (419)
T ss_pred hheeeehhhhc
Confidence 55555555554
No 46
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.40 E-value=2.9e-08 Score=88.26 Aligned_cols=86 Identities=26% Similarity=0.298 Sum_probs=50.9
Q ss_pred cEEEccCCcccccchhhhhccccCceEeccCCcccccCCcccCCCCCCCEEeCCCCcccccCCccccccCCCCeEeCcCC
Q 002556 707 KCLDLSSNKLCGPILEEIMDLDGLIALNLSRNNLTGPISPKIGQLKSLDFLDLSRNHFSGSIPSSLVKLCGLGVLDLSYN 786 (908)
Q Consensus 707 ~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~ls~N 786 (908)
+.|+|++|+|+ .+|+++..++.|+.|+++.|.+. ..|..+..|.+|-.||.-+|.+. .||..+-.-+.....++.++
T Consensus 80 t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgne 156 (177)
T KOG4579|consen 80 TTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNE 156 (177)
T ss_pred hhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCC
Confidence 55666666666 45666666666666666666666 44555555666666666666665 44444332233344455666
Q ss_pred cccccCCCC
Q 002556 787 NLSGKIPLG 795 (908)
Q Consensus 787 ~l~g~iP~~ 795 (908)
++.+.+|.+
T Consensus 157 pl~~~~~~k 165 (177)
T KOG4579|consen 157 PLGDETKKK 165 (177)
T ss_pred cccccCccc
Confidence 666666654
No 47
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.36 E-value=2e-08 Score=111.74 Aligned_cols=127 Identities=24% Similarity=0.186 Sum_probs=62.8
Q ss_pred CcCEEEccCCcCccCCCCCCCCCCCcEEEccCccCCCccccccccCCCCCEEECCCCcccCccChhhhcCCCCCCEEECC
Q 002556 295 SLEGLCLYDNDITGPIPDLGGFSSLKELYLGENSLNGTINKSLNHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLYLA 374 (908)
Q Consensus 295 ~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~ 374 (908)
.|...+.+.|.+...-..+.-++.|+.|+|++|+++.. +.+..|++|++|||+.|.+. .+|.-....+. |+.|.++
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lr 240 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLR 240 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhh-heeeeec
Confidence 55555555555543333344455566666666665533 24555666666666666555 33331222222 5555555
Q ss_pred CCCCccccCCCcCCCCCccEEEccCCCCCCChhHHhhcCccccEeeecCccccCCcchhhhhhhhhhHHhccccccc
Q 002556 375 NNPLTMKLSHDWVPPFQLKWLSLASCKMGPNFPKWLRTQSQLILLDISNTGISGTVPDWFWDLSVELFFLNLSNNHI 451 (908)
Q Consensus 375 ~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~~~~~L~~L~L~~n~l 451 (908)
+|.++.. ..+.++.+|+.||+++|-+.+.-.-.+...+..|+.|+|.+|.+
T Consensus 241 nN~l~tL--------------------------~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 241 NNALTTL--------------------------RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred ccHHHhh--------------------------hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 5544321 12445555666666666555432222222233566666666655
No 48
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=4.4e-08 Score=98.32 Aligned_cols=203 Identities=23% Similarity=0.146 Sum_probs=140.7
Q ss_pred CeEEEeecCCCcccchhhhhHHhhcCC-CCCcEEecCCCcCCCCCchhHhhcCCCCCCEEEccCCCCCCCCCCccccccc
Q 002556 110 HVKVLNLRTSDYEFARRKFLKEWLSHL-SSLRHLDLSCVNLTKSSDWFQVVANLHYLKSLVLRSCALPPINPSFIWHFNL 188 (908)
Q Consensus 110 ~v~~l~L~~~~l~~~~~~~~~~~l~~l-~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l 188 (908)
.|..+.+...-... |.+ ++.+.-+ +.|++||||...++.. .+-..+..|.+|+.|.|.++++.+.+. ..++.-
T Consensus 160 gV~v~Rlar~~~~~--prl-ae~~~~frsRlq~lDLS~s~it~s-tl~~iLs~C~kLk~lSlEg~~LdD~I~--~~iAkN 233 (419)
T KOG2120|consen 160 GVIVFRLARSFMDQ--PRL-AEHFSPFRSRLQHLDLSNSVITVS-TLHGILSQCSKLKNLSLEGLRLDDPIV--NTIAKN 233 (419)
T ss_pred CeEEEEcchhhhcC--chh-hhhhhhhhhhhHHhhcchhheeHH-HHHHHHHHHHhhhhccccccccCcHHH--HHHhcc
Confidence 56777776322111 221 1223223 4699999999998763 345667889999999999999998776 777777
Q ss_pred cCcccEEEcCCCC-CCCCCchhhhhhccCCccEEEcccccCCCCccH-hhhc-CCCCcEEEccCCcCC---CCccccccC
Q 002556 189 STSIETLDLFDNN-LPSSSVYPWFLNLSRNILHLNLASNSLQGPIPE-AFQH-MVSLRFLALSSNELE---GGIPKFFGN 262 (908)
Q Consensus 189 ~~~L~~LdLs~n~-l~~~~~p~~~~~l~~~L~~L~Ls~n~l~~~~p~-~l~~-l~~L~~L~Ls~n~l~---~~~p~~l~~ 262 (908)
.+|+.|+++.+. ++....---+..+. .|..|+|+.|.+....-. .+.+ -++|..|+|+++.-. ..+..-...
T Consensus 234 -~~L~~lnlsm~sG~t~n~~~ll~~scs-~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~r 311 (419)
T KOG2120|consen 234 -SNLVRLNLSMCSGFTENALQLLLSSCS-RLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRR 311 (419)
T ss_pred -ccceeeccccccccchhHHHHHHHhhh-hHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHh
Confidence 999999999864 44422223455566 999999999988754322 2233 257899999987422 122233468
Q ss_pred CCCCCEEEccCCC-CccchhhHHhhccCCCCCCCcCEEEccCCcCccCCCC----CCCCCCCcEEEccCcc
Q 002556 263 MCSLNELYLLNNK-LSGQLSEFIQNLSSGCTVNSLEGLCLYDNDITGPIPD----LGGFSSLKELYLGENS 328 (908)
Q Consensus 263 l~~L~~L~Ls~n~-l~~~~~~~l~~l~~~~~l~~L~~L~L~~n~l~~~~~~----l~~l~~L~~L~Ls~n~ 328 (908)
+++|.+|||++|. ++......+.+++ .|++|.++.|.. ++|. +...+.|.+|++.++-
T Consensus 312 cp~l~~LDLSD~v~l~~~~~~~~~kf~------~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 312 CPNLVHLDLSDSVMLKNDCFQEFFKFN------YLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred CCceeeeccccccccCchHHHHHHhcc------hheeeehhhhcC--CChHHeeeeccCcceEEEEecccc
Confidence 9999999999875 4444445566666 999999999974 4554 7888999999998764
No 49
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.27 E-value=2.2e-06 Score=85.16 Aligned_cols=66 Identities=20% Similarity=0.042 Sum_probs=32.8
Q ss_pred CCCCCCcEEEccCccCCCcc----ccccccCCCCCEEECCCCcccCccChhhh-----cCCCCCCEEECCCCCCc
Q 002556 314 GGFSSLKELYLGENSLNGTI----NKSLNHLFKLETLSLDGNSFTGVISETFF-----SNMSNLQMLYLANNPLT 379 (908)
Q Consensus 314 ~~l~~L~~L~Ls~n~l~~~~----~~~l~~l~~L~~L~L~~n~l~~~~~~~~l-----~~l~~L~~L~L~~n~l~ 379 (908)
..+.+|+.|||..|.++-.. ...+...+.|+.|.+.+|-++..-....+ ...++|+.|...+|...
T Consensus 211 ~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~ 285 (388)
T COG5238 211 FYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERR 285 (388)
T ss_pred HHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhc
Confidence 34556666666666655221 22233445566666666655533222221 12355555555555544
No 50
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.20 E-value=2.8e-07 Score=92.63 Aligned_cols=17 Identities=29% Similarity=0.362 Sum_probs=7.7
Q ss_pred hhcCccccEeeecCccc
Q 002556 410 LRTQSQLILLDISNTGI 426 (908)
Q Consensus 410 l~~l~~L~~L~Ls~n~l 426 (908)
+..+++|..|.++++.+
T Consensus 245 Ln~f~~l~dlRv~~~Pl 261 (418)
T KOG2982|consen 245 LNGFPQLVDLRVSENPL 261 (418)
T ss_pred HcCCchhheeeccCCcc
Confidence 34444444444444444
No 51
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.17 E-value=1.7e-07 Score=83.47 Aligned_cols=101 Identities=22% Similarity=0.277 Sum_probs=78.9
Q ss_pred ccEEEccCCcccccchhhhhccccCceEeccCCcccccCCcccCCCCCCCEEeCCCCcccccCCccccccCCCCeEeCcC
Q 002556 706 VKCLDLSSNKLCGPILEEIMDLDGLIALNLSRNNLTGPISPKIGQLKSLDFLDLSRNHFSGSIPSSLVKLCGLGVLDLSY 785 (908)
Q Consensus 706 L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~ls~ 785 (908)
|+.++|++|.+....+.--...+..+.|+|++|.++ .+|.++..++.|+.|+++.|.+. ..|..+..|.++.+||..+
T Consensus 55 l~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~ 132 (177)
T KOG4579|consen 55 LTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPE 132 (177)
T ss_pred EEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCC
Confidence 477899999998544443344568999999999999 78999999999999999999999 6778888899999999999
Q ss_pred CcccccCCCCccccccccccccCC
Q 002556 786 NNLSGKIPLGTQLQSFNASVYAGN 809 (908)
Q Consensus 786 N~l~g~iP~~~~~~~~~~~~~~gn 809 (908)
|... +||......+..+..-.||
T Consensus 133 na~~-eid~dl~~s~~~al~~lgn 155 (177)
T KOG4579|consen 133 NARA-EIDVDLFYSSLPALIKLGN 155 (177)
T ss_pred Cccc-cCcHHHhccccHHHHHhcC
Confidence 9886 7786533333333333345
No 52
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.16 E-value=4.9e-07 Score=90.92 Aligned_cols=46 Identities=22% Similarity=0.234 Sum_probs=34.5
Q ss_pred cCCCCCcEEecCCCcCCCCCchhHhhcCCCCCCEEEccCCCCCCCC
Q 002556 134 SHLSSLRHLDLSCVNLTKSSDWFQVVANLHYLKSLVLRSCALPPIN 179 (908)
Q Consensus 134 ~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ 179 (908)
...+.++.|||.+|.++...++...+.++|+|++|+|+.|++...+
T Consensus 68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I 113 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDI 113 (418)
T ss_pred HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcc
Confidence 3456788888888888876666666778888888888888776544
No 53
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.90 E-value=1.4e-06 Score=91.94 Aligned_cols=279 Identities=16% Similarity=0.132 Sum_probs=143.4
Q ss_pred CCcEEecCCCcCCCCCchhHhhcCCCCCCEEEccCCC-CCCCCCCccccccccCcccEEEcCCC-CCCCCCchhhhhhcc
Q 002556 138 SLRHLDLSCVNLTKSSDWFQVVANLHYLKSLVLRSCA-LPPINPSFIWHFNLSTSIETLDLFDN-NLPSSSVYPWFLNLS 215 (908)
Q Consensus 138 ~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~l~~l~~~L~~LdLs~n-~l~~~~~p~~~~~l~ 215 (908)
.|+.|.+.++.=.+...+.....+++++++|++.+|. ++...- ..+...++.|++|++..| .++. .....+..-.
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~--~sla~~C~~l~~l~L~~c~~iT~-~~Lk~la~gC 215 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSL--LSLARYCRKLRHLNLHSCSSITD-VSLKYLAEGC 215 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHH--HHHHHhcchhhhhhhcccchhHH-HHHHHHHHhh
Confidence 5666777766655554455555677777777777764 222222 444555677777777764 3333 3333344444
Q ss_pred CCccEEEccccc-CCCC-ccHhhhcCCCCcEEEccCCcCCCCccccc----cCCCCCCEEEccCCC-CccchhhHHhhcc
Q 002556 216 RNILHLNLASNS-LQGP-IPEAFQHMVSLRFLALSSNELEGGIPKFF----GNMCSLNELYLLNNK-LSGQLSEFIQNLS 288 (908)
Q Consensus 216 ~~L~~L~Ls~n~-l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l----~~l~~L~~L~Ls~n~-l~~~~~~~l~~l~ 288 (908)
++|++|+++++. +++. +.....+++.++.+.+.+|.=.+. +++ +.+..+..+++.++. +++. .+....
T Consensus 216 ~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~l--e~l~~~~~~~~~i~~lnl~~c~~lTD~---~~~~i~ 290 (483)
T KOG4341|consen 216 RKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELEL--EALLKAAAYCLEILKLNLQHCNQLTDE---DLWLIA 290 (483)
T ss_pred hhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccH--HHHHHHhccChHhhccchhhhccccch---HHHHHh
Confidence 477777777763 3321 122334555566665555421110 111 123334444444442 2221 122221
Q ss_pred CCCCCCCcCEEEccCCcCccCCCC---CCCCCCCcEEEccCcc-CCCcccccc-ccCCCCCEEECCCCcccCccC-hhhh
Q 002556 289 SGCTVNSLEGLCLYDNDITGPIPD---LGGFSSLKELYLGENS-LNGTINKSL-NHLFKLETLSLDGNSFTGVIS-ETFF 362 (908)
Q Consensus 289 ~~~~l~~L~~L~L~~n~l~~~~~~---l~~l~~L~~L~Ls~n~-l~~~~~~~l-~~l~~L~~L~L~~n~l~~~~~-~~~l 362 (908)
+....|++|+.+++...+..+- -.+.++|+.|.++.++ ++..--..+ .+++.|+.+++..+....... ...-
T Consensus 291 --~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls 368 (483)
T KOG4341|consen 291 --CGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLS 368 (483)
T ss_pred --hhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhc
Confidence 1122667777766654322111 3456777777777665 222211122 256677777777764321110 0012
Q ss_pred cCCCCCCEEECCCCCCcccc-----CCCcCCCCCccEEEccCCCCC-CChhHHhhcCccccEeeecCccc
Q 002556 363 SNMSNLQMLYLANNPLTMKL-----SHDWVPPFQLKWLSLASCKMG-PNFPKWLRTQSQLILLDISNTGI 426 (908)
Q Consensus 363 ~~l~~L~~L~L~~n~l~~~~-----~~~~~~~~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~Ls~n~l 426 (908)
.+++.|+.+.++++...... ...-.....++.+.+++|... ...-+.+..+++|+.+++..++-
T Consensus 369 ~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~ 438 (483)
T KOG4341|consen 369 RNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQD 438 (483)
T ss_pred cCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhh
Confidence 35677777777766543221 222234556777777777543 33445566777888887777653
No 54
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.75 E-value=2e-05 Score=93.29 Aligned_cols=157 Identities=15% Similarity=0.139 Sum_probs=74.3
Q ss_pred CCCCEEEccCCCC-CCCCCCccccccccCcccEEEcCCCCCCCCCchhhhhhccCCccEEEcccccCCCCccHhhhcCCC
Q 002556 163 HYLKSLVLRSCAL-PPINPSFIWHFNLSTSIETLDLFDNNLPSSSVYPWFLNLSRNILHLNLASNSLQGPIPEAFQHMVS 241 (908)
Q Consensus 163 ~~L~~L~Ls~n~l-~~~~~~~~~l~~l~~~L~~LdLs~n~l~~~~~p~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~ 241 (908)
.+|++|++++... ....+ ..++.++|+|+.|.+++-.+....+.....+++ +|..||+|+++++.. ..++++++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~--~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFp-NL~sLDIS~TnI~nl--~GIS~Lkn 196 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWP--KKIGTMLPSLRSLVISGRQFDNDDFSQLCASFP-NLRSLDISGTNISNL--SGISRLKN 196 (699)
T ss_pred HhhhhcCccccchhhccHH--HHHhhhCcccceEEecCceecchhHHHHhhccC-ccceeecCCCCccCc--HHHhcccc
Confidence 3556666655432 22222 444554566666666655554312222223333 666666666655533 45556666
Q ss_pred CcEEEccCCcCCC-CccccccCCCCCCEEEccCCCCccchhhHHhhccCCCCCCCcCEEEccCCcCccCCCCCCCCCCCc
Q 002556 242 LRFLALSSNELEG-GIPKFFGNMCSLNELYLLNNKLSGQLSEFIQNLSSGCTVNSLEGLCLYDNDITGPIPDLGGFSSLK 320 (908)
Q Consensus 242 L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~l~~L~~L~L~~n~l~~~~~~l~~l~~L~ 320 (908)
|++|.+.+=.+.. ..-..+.+|++|++||+|........ ..+... +.--..+++|+
T Consensus 197 Lq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~-~ii~qY----------------------lec~~~LpeLr 253 (699)
T KOG3665|consen 197 LQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDT-KIIEQY----------------------LECGMVLPELR 253 (699)
T ss_pred HHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccch-HHHHHH----------------------HHhcccCcccc
Confidence 6666555444432 11123445556666665554433211 000000 00012467888
Q ss_pred EEEccCccCCCccccccc-cCCCCCEEE
Q 002556 321 ELYLGENSLNGTINKSLN-HLFKLETLS 347 (908)
Q Consensus 321 ~L~Ls~n~l~~~~~~~l~-~l~~L~~L~ 347 (908)
.||.|++.+.+.+-+.+- .-++|+.+.
T Consensus 254 fLDcSgTdi~~~~le~ll~sH~~L~~i~ 281 (699)
T KOG3665|consen 254 FLDCSGTDINEEILEELLNSHPNLQQIA 281 (699)
T ss_pred EEecCCcchhHHHHHHHHHhCccHhhhh
Confidence 888888777755444332 334444443
No 55
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.75 E-value=5.8e-05 Score=82.19 Aligned_cols=76 Identities=16% Similarity=0.212 Sum_probs=52.8
Q ss_pred cCCCCCccEEEccCccccccCCcCccCCCCCcEEEccCCcccccCchhhhhcccccceeecCCC-ccccccchhhhcCCC
Q 002556 553 MGFLHNIRTLSLNNNRLTRELPSSLKNCSQLRVLDLRNNALFGEIPIWIGGNLQNLIVLSLKSN-NFHGNIPFQLCYLAF 631 (908)
Q Consensus 553 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~~L~~L~L~~N-~l~~~~p~~l~~l~~ 631 (908)
+..+.+++.|++++|.++ .+|. + -.+|+.|.+++|.-...+|..+. ++|+.|++++| .+. .+|. +
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP~~LP---~nLe~L~Ls~Cs~L~-sLP~------s 113 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLPGSIP---EGLEKLTVCHCPEIS-GLPE------S 113 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCCchhh---hhhhheEccCccccc-cccc------c
Confidence 344688999999999887 4562 2 24699999988554456776542 58899999988 443 4553 4
Q ss_pred CCEEEccCCCC
Q 002556 632 IQVLDLSLNNI 642 (908)
Q Consensus 632 L~~L~Ls~N~l 642 (908)
|+.|++++|..
T Consensus 114 Le~L~L~~n~~ 124 (426)
T PRK15386 114 VRSLEIKGSAT 124 (426)
T ss_pred cceEEeCCCCC
Confidence 77777776654
No 56
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.75 E-value=1.9e-05 Score=57.32 Aligned_cols=36 Identities=39% Similarity=0.619 Sum_probs=18.0
Q ss_pred cCceEeccCCcccccCCcccCCCCCCCEEeCCCCccc
Q 002556 729 GLIALNLSRNNLTGPISPKIGQLKSLDFLDLSRNHFS 765 (908)
Q Consensus 729 ~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~ 765 (908)
+|++|++++|+++ .+|+.+++|++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4555555555555 34444555555555555555554
No 57
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.64 E-value=3.7e-05 Score=90.94 Aligned_cols=142 Identities=18% Similarity=0.207 Sum_probs=103.1
Q ss_pred CCCCcEEecCCCcCCCCCchhHhhc-CCCCCCEEEccCCCCCCCCCCccccccccCcccEEEcCCCCCCCCCchhhhhhc
Q 002556 136 LSSLRHLDLSCVNLTKSSDWFQVVA-NLHYLKSLVLRSCALPPINPSFIWHFNLSTSIETLDLFDNNLPSSSVYPWFLNL 214 (908)
Q Consensus 136 l~~L~~L~Ls~n~l~~~~~~~~~l~-~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~~L~~LdLs~n~l~~~~~p~~~~~l 214 (908)
-.+|++||+++..... ..|+..++ .||.|++|.+++-.+.... +..++.-.|+|..||+|+.+++. ...++++
T Consensus 121 r~nL~~LdI~G~~~~s-~~W~~kig~~LPsL~sL~i~~~~~~~~d--F~~lc~sFpNL~sLDIS~TnI~n---l~GIS~L 194 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFS-NGWPKKIGTMLPSLRSLVISGRQFDNDD--FSQLCASFPNLRSLDISGTNISN---LSGISRL 194 (699)
T ss_pred HHhhhhcCccccchhh-ccHHHHHhhhCcccceEEecCceecchh--HHHHhhccCccceeecCCCCccC---cHHHhcc
Confidence 3589999999876543 36888887 5899999999987775432 13333333999999999999965 3778889
Q ss_pred cCCccEEEcccccCCC-CccHhhhcCCCCcEEEccCCcCCCCc--c----ccccCCCCCCEEEccCCCCccchhhHH
Q 002556 215 SRNILHLNLASNSLQG-PIPEAFQHMVSLRFLALSSNELEGGI--P----KFFGNMCSLNELYLLNNKLSGQLSEFI 284 (908)
Q Consensus 215 ~~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~Ls~n~l~~~~--p----~~l~~l~~L~~L~Ls~n~l~~~~~~~l 284 (908)
. +|++|.+.+=.+.. ..-..+.+|++|++||+|........ . +.-..||+|+.||.|++.+....-+.+
T Consensus 195 k-nLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~l 270 (699)
T KOG3665|consen 195 K-NLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEEL 270 (699)
T ss_pred c-cHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHH
Confidence 8 99999988866653 23346788999999999987655221 1 122358899999999887775544443
No 58
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.63 E-value=0.00014 Score=72.77 Aligned_cols=220 Identities=16% Similarity=0.092 Sum_probs=136.9
Q ss_pred CeEEEeecCCCcccchhhhhHHhhcCCCCCcEEecCCCcCCCC--------CchhHhhcCCCCCCEEEccCCCCCCCCCC
Q 002556 110 HVKVLNLRTSDYEFARRKFLKEWLSHLSSLRHLDLSCVNLTKS--------SDWFQVVANLHYLKSLVLRSCALPPINPS 181 (908)
Q Consensus 110 ~v~~l~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~--------~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~ 181 (908)
.++.++|++|.+.....+.+...+.+-++|+..+++.-..... .-+.+++.+||+|+..+||.|.+....|.
T Consensus 31 ~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e 110 (388)
T COG5238 31 ELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPE 110 (388)
T ss_pred ceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccch
Confidence 5778888888776554444445567777788887776543322 11345667788888888888887665551
Q ss_pred --ccccccccCcccEEEcCCCCCCC---CCchhhhhhc--------cCCccEEEcccccCCCCccH----hhhcCCCCcE
Q 002556 182 --FIWHFNLSTSIETLDLFDNNLPS---SSVYPWFLNL--------SRNILHLNLASNSLQGPIPE----AFQHMVSLRF 244 (908)
Q Consensus 182 --~~~l~~l~~~L~~LdLs~n~l~~---~~~p~~~~~l--------~~~L~~L~Ls~n~l~~~~p~----~l~~l~~L~~ 244 (908)
...+..- +.|.+|.+++|.+.. ..+-..++.+ .|.|++.....|++..-... .+..-.+|++
T Consensus 111 ~L~d~is~~-t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~ 189 (388)
T COG5238 111 ELGDLISSS-TDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLKE 189 (388)
T ss_pred HHHHHHhcC-CCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCcee
Confidence 1112333 678888888887632 1222222221 24788888888887633221 2223357888
Q ss_pred EEccCCcCCCCc-----cccccCCCCCCEEEccCCCCccchhhHHhhccCCCCCCCcCEEEccCCcCccCCCC-----C-
Q 002556 245 LALSSNELEGGI-----PKFFGNMCSLNELYLLNNKLSGQLSEFIQNLSSGCTVNSLEGLCLYDNDITGPIPD-----L- 313 (908)
Q Consensus 245 L~Ls~n~l~~~~-----p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~l~~L~~L~L~~n~l~~~~~~-----l- 313 (908)
+.+..|.|.-.- -..+..+.+|++||+.+|-++-.....++..- |.++.|+.|.+..|-++..-.. +
T Consensus 190 vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al--~~W~~lrEL~lnDClls~~G~~~v~~~f~ 267 (388)
T COG5238 190 VKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADAL--CEWNLLRELRLNDCLLSNEGVKSVLRRFN 267 (388)
T ss_pred EEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHh--cccchhhhccccchhhccccHHHHHHHhh
Confidence 888888776221 11234578888999998888765555554432 5666888888888887643221 1
Q ss_pred -CCCCCCcEEEccCccCCCc
Q 002556 314 -GGFSSLKELYLGENSLNGT 332 (908)
Q Consensus 314 -~~l~~L~~L~Ls~n~l~~~ 332 (908)
...++|..|-..+|.+.+.
T Consensus 268 e~~~p~l~~L~~~Yne~~~~ 287 (388)
T COG5238 268 EKFVPNLMPLPGDYNERRGG 287 (388)
T ss_pred hhcCCCccccccchhhhcCc
Confidence 1347788888888877654
No 59
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.55 E-value=0.00011 Score=53.27 Aligned_cols=36 Identities=28% Similarity=0.528 Sum_probs=17.4
Q ss_pred CccEEEcccccCCCCccHhhhcCCCCcEEEccCCcCC
Q 002556 217 NILHLNLASNSLQGPIPEAFQHMVSLRFLALSSNELE 253 (908)
Q Consensus 217 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 253 (908)
+|++|++++|+++ .+|..+++|++|++|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4555555555555 33444555555555555555544
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.54 E-value=0.00014 Score=69.95 Aligned_cols=40 Identities=25% Similarity=0.180 Sum_probs=22.8
Q ss_pred CCCCCCCcEEEccCccCCCcc---ccccccCCCCCEEECCCCc
Q 002556 313 LGGFSSLKELYLGENSLNGTI---NKSLNHLFKLETLSLDGNS 352 (908)
Q Consensus 313 l~~l~~L~~L~Ls~n~l~~~~---~~~l~~l~~L~~L~L~~n~ 352 (908)
+..++.|++|.+-+|.++... ...+..+++|+.||..+-.
T Consensus 109 La~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 109 LASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred hccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 555666666666666655321 1234566777777766543
No 61
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.44 E-value=0.00042 Score=75.62 Aligned_cols=135 Identities=17% Similarity=0.216 Sum_probs=85.0
Q ss_pred hcCCCCCcEEecCCCcCCCCCchhHhhcCCCCCCEEEccCCCCCCCCCCccccccccCcccEEEcCCC-CCCCCCchhhh
Q 002556 133 LSHLSSLRHLDLSCVNLTKSSDWFQVVANLHYLKSLVLRSCALPPINPSFIWHFNLSTSIETLDLFDN-NLPSSSVYPWF 211 (908)
Q Consensus 133 l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~~L~~LdLs~n-~l~~~~~p~~~ 211 (908)
+..++++++|++++|.++..+.+ -++|++|++++|.--...| . .++++|++|++++| .+. .+|
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP~L------P~sLtsL~Lsnc~nLtsLP--~---~LP~nLe~L~Ls~Cs~L~--sLP--- 111 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLPVL------PNELTEITIENCNNLTTLP--G---SIPEGLEKLTVCHCPEIS--GLP--- 111 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccCCC------CCCCcEEEccCCCCcccCC--c---hhhhhhhheEccCccccc--ccc---
Confidence 55678899999999988774321 2369999999875434344 1 23488999999988 442 333
Q ss_pred hhccCCccEEEcccccCC--CCccHhhhcCCCCcEEEccCCcCC--CCccccccCC-CCCCEEEccCCCCccchhhHHhh
Q 002556 212 LNLSRNILHLNLASNSLQ--GPIPEAFQHMVSLRFLALSSNELE--GGIPKFFGNM-CSLNELYLLNNKLSGQLSEFIQN 286 (908)
Q Consensus 212 ~~l~~~L~~L~Ls~n~l~--~~~p~~l~~l~~L~~L~Ls~n~l~--~~~p~~l~~l-~~L~~L~Ls~n~l~~~~~~~l~~ 286 (908)
++|++|+++.+... +.+|. +|+.|.+.+++.. ..+|. .+ ++|++|++++|.... .|..
T Consensus 112 ----~sLe~L~L~~n~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp~---~LPsSLk~L~Is~c~~i~-LP~~--- 174 (426)
T PRK15386 112 ----ESVRSLEIKGSATDSIKNVPN------GLTSLSINSYNPENQARIDN---LISPSLKTLSLTGCSNII-LPEK--- 174 (426)
T ss_pred ----cccceEEeCCCCCcccccCcc------hHhheecccccccccccccc---ccCCcccEEEecCCCccc-Cccc---
Confidence 37888888776543 22333 5667777543311 11111 12 589999999887552 2322
Q ss_pred ccCCCCCCCcCEEEccCCc
Q 002556 287 LSSGCTVNSLEGLCLYDND 305 (908)
Q Consensus 287 l~~~~~l~~L~~L~L~~n~ 305 (908)
++. +|+.|+++.+.
T Consensus 175 LP~-----SLk~L~ls~n~ 188 (426)
T PRK15386 175 LPE-----SLQSITLHIEQ 188 (426)
T ss_pred ccc-----cCcEEEecccc
Confidence 221 89999988764
No 62
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.40 E-value=1.5e-05 Score=84.44 Aligned_cols=260 Identities=20% Similarity=0.154 Sum_probs=152.9
Q ss_pred CCCCEEEccCCCCCCCCCCccccccccCcccEEEcCCCCCCCCCchhhhhhccCCccEEEcccc-cCCCCccH-hhhcCC
Q 002556 163 HYLKSLVLRSCALPPINPSFIWHFNLSTSIETLDLFDNNLPSSSVYPWFLNLSRNILHLNLASN-SLQGPIPE-AFQHMV 240 (908)
Q Consensus 163 ~~L~~L~Ls~n~l~~~~~~~~~l~~l~~~L~~LdLs~n~l~~~~~p~~~~~l~~~L~~L~Ls~n-~l~~~~p~-~l~~l~ 240 (908)
..|+.|.+++++-.+.-+. ..+..-++++++|++.++..........+.+..++|++|+|..| .++...-. -...++
T Consensus 138 g~lk~LSlrG~r~v~~ssl-rt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~ 216 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSL-RTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCR 216 (483)
T ss_pred cccccccccccccCCcchh-hHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhh
Confidence 4789999999976665443 34444459999999998864332445567777779999999985 34433222 234689
Q ss_pred CCcEEEccCCc-CCCC-ccccccCCCCCCEEEccCCCCccchhhHHhhccCCCCCCCcCEEEccCCcCccCCCC---CCC
Q 002556 241 SLRFLALSSNE-LEGG-IPKFFGNMCSLNELYLLNNKLSGQLSEFIQNLSSGCTVNSLEGLCLYDNDITGPIPD---LGG 315 (908)
Q Consensus 241 ~L~~L~Ls~n~-l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~l~~L~~L~L~~n~l~~~~~~---l~~ 315 (908)
+|++|+++.+. +++. +.....++..++.+.+.+|. +..-+.+..... ....+..+++..|.......- -..
T Consensus 217 kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~--e~~le~l~~~~~--~~~~i~~lnl~~c~~lTD~~~~~i~~~ 292 (483)
T KOG4341|consen 217 KLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCL--ELELEALLKAAA--YCLEILKLNLQHCNQLTDEDLWLIACG 292 (483)
T ss_pred hHHHhhhccCchhhcCcchHHhccchhhhhhhhcccc--cccHHHHHHHhc--cChHhhccchhhhccccchHHHHHhhh
Confidence 99999999874 4431 12234566667777666653 222333433321 111456666666643221111 234
Q ss_pred CCCCcEEEccCccC-CCcccccc-ccCCCCCEEECCCCcccCccC-hhhhcCCCCCCEEECCCCCCccc--cCCCcCCCC
Q 002556 316 FSSLKELYLGENSL-NGTINKSL-NHLFKLETLSLDGNSFTGVIS-ETFFSNMSNLQMLYLANNPLTMK--LSHDWVPPF 390 (908)
Q Consensus 316 l~~L~~L~Ls~n~l-~~~~~~~l-~~l~~L~~L~L~~n~l~~~~~-~~~l~~l~~L~~L~L~~n~l~~~--~~~~~~~~~ 390 (908)
+..|+.|+.+++.- +...-..+ .+..+|+.|.++.++--+..- ...-.+++.|+.+++..+..... +...-.+.+
T Consensus 293 c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~ 372 (483)
T KOG4341|consen 293 CHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCP 372 (483)
T ss_pred hhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCc
Confidence 67888888877643 32222333 367888888888886321111 11124677888888888764322 222234456
Q ss_pred CccEEEccCCCCCCCh-----hHHhhcCccccEeeecCcccc
Q 002556 391 QLKWLSLASCKMGPNF-----PKWLRTQSQLILLDISNTGIS 427 (908)
Q Consensus 391 ~L~~L~L~~n~l~~~~-----p~~l~~l~~L~~L~Ls~n~l~ 427 (908)
.|+.+.++.|...... ...-..+..|+.+.|+++...
T Consensus 373 ~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i 414 (483)
T KOG4341|consen 373 RLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLI 414 (483)
T ss_pred hhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCc
Confidence 7888888877543211 111234566777777777654
No 63
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.30 E-value=0.00049 Score=66.22 Aligned_cols=39 Identities=26% Similarity=0.243 Sum_probs=17.8
Q ss_pred cccCCCCCEEECCCCcccCccC--hhhhcCCCCCCEEECCC
Q 002556 337 LNHLFKLETLSLDGNSFTGVIS--ETFFSNMSNLQMLYLAN 375 (908)
Q Consensus 337 l~~l~~L~~L~L~~n~l~~~~~--~~~l~~l~~L~~L~L~~ 375 (908)
+..+++|+.|.+-+|..+..-- .-.+..+++|+.||.+.
T Consensus 109 La~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 109 LASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred hccCCccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 3445555555555554432111 01234455555555544
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.54 E-value=0.0016 Score=65.52 Aligned_cols=91 Identities=23% Similarity=0.274 Sum_probs=50.2
Q ss_pred CCcccccCCCCCEEECCCCcCcccCCCCcCCCCCccEEEccCc--cccccCCcCccCCCCCcEEEccCCcccccCchhhh
Q 002556 525 LPDCWLNFNSLFILNLANNSFSGKIPDSMGFLHNIRTLSLNNN--RLTRELPSSLKNCSQLRVLDLRNNALFGEIPIWIG 602 (908)
Q Consensus 525 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N--~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~ 602 (908)
+......+..|+.|.+.+..++.. ..+..+++|+.|.++.| ++.+.++.....+++|++|++++|++.. +..+.
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~ 110 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLR 110 (260)
T ss_pred cccccccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccc
Confidence 333444455566666666665522 23455667777777777 5555555445556777777777776642 11111
Q ss_pred --hcccccceeecCCCccc
Q 002556 603 --GNLQNLIVLSLKSNNFH 619 (908)
Q Consensus 603 --~~l~~L~~L~L~~N~l~ 619 (908)
..+.+|..|++.+|..+
T Consensus 111 pl~~l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 111 PLKELENLKSLDLFNCSVT 129 (260)
T ss_pred hhhhhcchhhhhcccCCcc
Confidence 13455666666666554
No 65
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.52 E-value=0.0055 Score=56.77 Aligned_cols=121 Identities=21% Similarity=0.298 Sum_probs=43.7
Q ss_pred hhhcCCCCcEEEccCCcCCCCccccccCCCCCCEEEccCCCCccchhhHHhhccCCCCCCCcCEEEccCCcCccCCCC-C
Q 002556 235 AFQHMVSLRFLALSSNELEGGIPKFFGNMCSLNELYLLNNKLSGQLSEFIQNLSSGCTVNSLEGLCLYDNDITGPIPD-L 313 (908)
Q Consensus 235 ~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~~~~l~~L~~L~L~~n~l~~~~~~-l 313 (908)
.|.++++|+.+.+.. .+......+|.++++|+.+.+.++ +.......+..+. +|+.+.+.. .+...... +
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~------~l~~i~~~~-~~~~i~~~~F 77 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCK------SLESITFPN-NLKSIGDNAF 77 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-T------T-EEEEETS-TT-EE-TTTT
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeeccc------ccccccccc-cccccccccc
Confidence 345555555555553 333333344555555666655543 3333333344443 455555543 22211112 5
Q ss_pred CCCCCCcEEEccCccCCCccccccccCCCCCEEECCCCcccCccChhhhcCCCCC
Q 002556 314 GGFSSLKELYLGENSLNGTINKSLNHLFKLETLSLDGNSFTGVISETFFSNMSNL 368 (908)
Q Consensus 314 ~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L 368 (908)
..+++|+.+++..+ +.......+.++ +|+.+.+.. .+. .++...|.++++|
T Consensus 78 ~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~-~i~~~~F~~~~~l 128 (129)
T PF13306_consen 78 SNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NIT-KIEENAFKNCTKL 128 (129)
T ss_dssp TT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-S-S----GGG-----
T ss_pred cccccccccccCcc-ccEEchhhhcCC-CceEEEECC-Ccc-EECCccccccccC
Confidence 55666666666544 333333445554 666666654 222 2344455555554
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.50 E-value=0.0016 Score=65.60 Aligned_cols=57 Identities=23% Similarity=0.184 Sum_probs=26.1
Q ss_pred CccEEEcccccCCCC-ccHhhhcCCCCcEEEccCCcCCCCc---cccccCCCCCCEEEccC
Q 002556 217 NILHLNLASNSLQGP-IPEAFQHMVSLRFLALSSNELEGGI---PKFFGNMCSLNELYLLN 273 (908)
Q Consensus 217 ~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~---p~~l~~l~~L~~L~Ls~ 273 (908)
+|++|++++|++.-. --..+..+.+|..|++..|..+... -..|.-+++|++|+-..
T Consensus 92 ~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~d 152 (260)
T KOG2739|consen 92 NLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCD 152 (260)
T ss_pred ceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccccc
Confidence 555555555554410 0012344455556666665544311 11244556666665433
No 67
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.42 E-value=0.011 Score=54.72 Aligned_cols=123 Identities=18% Similarity=0.230 Sum_probs=55.7
Q ss_pred cccccCCCCCEEECCCCcCcccCCCCcCCCCCccEEEccCccccccCCcCccCCCCCcEEEccCCcccccCchhhhhccc
Q 002556 527 DCWLNFNSLFILNLANNSFSGKIPDSMGFLHNIRTLSLNNNRLTRELPSSLKNCSQLRVLDLRNNALFGEIPIWIGGNLQ 606 (908)
Q Consensus 527 ~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~l~ 606 (908)
.+|.++++|+.+.+.. .+.......|..+++|+.+.+.++ +.......|.++++++.+.+.+ .+. .++...+..++
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~-~i~~~~F~~~~ 81 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLK-SIGDNAFSNCT 81 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT--EE-TTTTTT-T
T ss_pred HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccc-ccccccccccc
Confidence 3556666777777764 455455556777777777777664 5444445667776777777765 332 34444443567
Q ss_pred ccceeecCCCccccccchhhhcCCCCCEEEccCCCCCcCchhhhcccccc
Q 002556 607 NLIVLSLKSNNFHGNIPFQLCYLAFIQVLDLSLNNISGKIPKCFSNFSTM 656 (908)
Q Consensus 607 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~L 656 (908)
+|+.+++..+ +...-...+.+. .|+.+.+.. .+...-..+|.+++.|
T Consensus 82 ~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 82 NLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp TECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred cccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 7777777654 443334455565 777777665 3332333455554443
No 68
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.35 E-value=0.0021 Score=74.73 Aligned_cols=61 Identities=23% Similarity=0.126 Sum_probs=33.7
Q ss_pred CCccEEEccccc-CCCCccHhhhc-CCCCcEEEccCCc-CCCCcc-ccccCCCCCCEEEccCCCC
Q 002556 216 RNILHLNLASNS-LQGPIPEAFQH-MVSLRFLALSSNE-LEGGIP-KFFGNMCSLNELYLLNNKL 276 (908)
Q Consensus 216 ~~L~~L~Ls~n~-l~~~~p~~l~~-l~~L~~L~Ls~n~-l~~~~p-~~l~~l~~L~~L~Ls~n~l 276 (908)
++|+.|+++++. ++...-..++. +++|++|.+.++. ++...- .....++.|++|+++++..
T Consensus 243 ~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 243 RKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred CCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 366777777666 44333333333 6677777766665 442211 2234566677777776654
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.54 E-value=0.00079 Score=67.79 Aligned_cols=56 Identities=16% Similarity=0.101 Sum_probs=23.5
Q ss_pred ceEEEccCCcccCcCCcccccCCCCCEEECCCCcCcccCCCCcCCCCCccEEEccCcccc
Q 002556 511 WNIFDLSSNLLSGELPDCWLNFNSLFILNLANNSFSGKIPDSMGFLHNIRTLSLNNNRLT 570 (908)
Q Consensus 511 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 570 (908)
.+.|++.++.++++ .....++.|++|.||-|+|+..- .+..|++|+.|+|..|.|.
T Consensus 21 vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~ 76 (388)
T KOG2123|consen 21 VKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIE 76 (388)
T ss_pred hhhhcccCCCccHH--HHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccc
Confidence 34444444444422 12233444444444444444221 2334444444444444443
No 70
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.44 E-value=0.0019 Score=65.08 Aligned_cols=77 Identities=23% Similarity=0.229 Sum_probs=33.1
Q ss_pred CcccEEEcCCCCCCCCCchhhhhhccCCccEEEcccccCCCCc-cHhhhcCCCCcEEEccCCcCCCCccc-----cccCC
Q 002556 190 TSIETLDLFDNNLPSSSVYPWFLNLSRNILHLNLASNSLQGPI-PEAFQHMVSLRFLALSSNELEGGIPK-----FFGNM 263 (908)
Q Consensus 190 ~~L~~LdLs~n~l~~~~~p~~~~~l~~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~Ls~n~l~~~~p~-----~l~~l 263 (908)
+.|++|.||-|.|+. ...+..+. +|++|.|..|.|.... -..+.++++|+.|-|..|.-.|.-+. .+.-|
T Consensus 41 p~lEVLsLSvNkIss---L~pl~rCt-rLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~L 116 (388)
T KOG2123|consen 41 PLLEVLSLSVNKISS---LAPLQRCT-RLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVL 116 (388)
T ss_pred ccceeEEeecccccc---chhHHHHH-HHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHc
Confidence 444444444444432 22233444 4555555555444211 11234555555555555544333221 23445
Q ss_pred CCCCEEE
Q 002556 264 CSLNELY 270 (908)
Q Consensus 264 ~~L~~L~ 270 (908)
++|+.||
T Consensus 117 PnLkKLD 123 (388)
T KOG2123|consen 117 PNLKKLD 123 (388)
T ss_pred ccchhcc
Confidence 5555554
No 71
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.27 E-value=0.008 Score=69.86 Aligned_cols=142 Identities=23% Similarity=0.237 Sum_probs=94.2
Q ss_pred hhcCCCCCcEEecCCCcCCCCCchhHhhcCCCCCCEEEccCC-CCCCCCC-CccccccccCcccEEEcCCCC-CCCCCch
Q 002556 132 WLSHLSSLRHLDLSCVNLTKSSDWFQVVANLHYLKSLVLRSC-ALPPINP-SFIWHFNLSTSIETLDLFDNN-LPSSSVY 208 (908)
Q Consensus 132 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n-~l~~~~~-~~~~l~~l~~~L~~LdLs~n~-l~~~~~p 208 (908)
.....+.|+.|.+..+.-.....+.+....+++|+.|+++++ ......+ ....+...+++|+.|+++++. +++ ...
T Consensus 183 l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd-~~l 261 (482)
T KOG1947|consen 183 LLSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTD-IGL 261 (482)
T ss_pred HHhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCc-hhH
Confidence 345689999999998865443335677789999999999983 2222211 002233445899999999998 665 555
Q ss_pred hhhhhccCCccEEEccccc-CCCCcc-HhhhcCCCCcEEEccCCcCCC--CccccccCCCCCCEEEccCC
Q 002556 209 PWFLNLSRNILHLNLASNS-LQGPIP-EAFQHMVSLRFLALSSNELEG--GIPKFFGNMCSLNELYLLNN 274 (908)
Q Consensus 209 ~~~~~l~~~L~~L~Ls~n~-l~~~~p-~~l~~l~~L~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~Ls~n 274 (908)
..+....++|++|.+.+|. ++...- .....+++|++|+++++.... .+.....++++|+.|.+...
T Consensus 262 ~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~ 331 (482)
T KOG1947|consen 262 SALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSL 331 (482)
T ss_pred HHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhc
Confidence 5566544499999988887 554322 334578899999999887541 12333456777777665443
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.22 E-value=0.0084 Score=36.16 Aligned_cols=11 Identities=64% Similarity=0.625 Sum_probs=4.6
Q ss_pred ceEeccCCccc
Q 002556 731 IALNLSRNNLT 741 (908)
Q Consensus 731 ~~L~Ls~N~l~ 741 (908)
++|||++|+++
T Consensus 3 ~~Ldls~n~l~ 13 (22)
T PF00560_consen 3 EYLDLSGNNLT 13 (22)
T ss_dssp SEEEETSSEES
T ss_pred cEEECCCCcCE
Confidence 34444444444
No 73
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.16 E-value=0.0071 Score=36.48 Aligned_cols=21 Identities=52% Similarity=0.874 Sum_probs=14.5
Q ss_pred CCCEEeCCCCcccccCCccccc
Q 002556 753 SLDFLDLSRNHFSGSIPSSLVK 774 (908)
Q Consensus 753 ~L~~L~Ls~N~l~~~ip~~l~~ 774 (908)
+|++|||++|+++ .+|.+|++
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT
T ss_pred CccEEECCCCcCE-eCChhhcC
Confidence 4677777777777 66666654
No 74
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.92 E-value=0.0024 Score=72.61 Aligned_cols=90 Identities=32% Similarity=0.285 Sum_probs=51.7
Q ss_pred cCCCCcEEEccCCcCCCC----ccccccCCCC-CCEEEccCCCCccchhh----HHhhccCCCCCCCcCEEEccCCcCcc
Q 002556 238 HMVSLRFLALSSNELEGG----IPKFFGNMCS-LNELYLLNNKLSGQLSE----FIQNLSSGCTVNSLEGLCLYDNDITG 308 (908)
Q Consensus 238 ~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~-L~~L~Ls~n~l~~~~~~----~l~~l~~~~~l~~L~~L~L~~n~l~~ 308 (908)
...++++|++++|.++.. +...+...+. +..|++..|.+.+.... .+..++ ..+++++++.|.++.
T Consensus 202 ~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~-----~~l~~l~l~~nsi~~ 276 (478)
T KOG4308|consen 202 PLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLS-----ETLRVLDLSRNSITE 276 (478)
T ss_pred ccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccc-----hhhhhhhhhcCCccc
Confidence 355666666666665521 1122344444 56677777766543211 122221 166777777777765
Q ss_pred CCCC-----CCCCCCCcEEEccCccCCCc
Q 002556 309 PIPD-----LGGFSSLKELYLGENSLNGT 332 (908)
Q Consensus 309 ~~~~-----l~~l~~L~~L~Ls~n~l~~~ 332 (908)
.-.. +..++.++++.++.|.+...
T Consensus 277 ~~~~~L~~~l~~~~~l~~l~l~~n~l~~~ 305 (478)
T KOG4308|consen 277 KGVRDLAEVLVSCRQLEELSLSNNPLTDY 305 (478)
T ss_pred cchHHHHHHHhhhHHHHHhhcccCccccH
Confidence 3322 55677888899988888743
No 75
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.41 E-value=0.0017 Score=73.89 Aligned_cols=135 Identities=26% Similarity=0.251 Sum_probs=84.0
Q ss_pred CccEEEcccccCCCC----ccHhhhcCCCCcEEEccCCcCCC----Ccccc----ccCCCCCCEEEccCCCCccchh---
Q 002556 217 NILHLNLASNSLQGP----IPEAFQHMVSLRFLALSSNELEG----GIPKF----FGNMCSLNELYLLNNKLSGQLS--- 281 (908)
Q Consensus 217 ~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~Ls~n~l~~----~~p~~----l~~l~~L~~L~Ls~n~l~~~~~--- 281 (908)
.+++|++..|.++.. +.+.+.....++.+|++.|.+.. .++.. +....++++|.+++|.++...-
T Consensus 145 ~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l 224 (478)
T KOG4308|consen 145 LLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALL 224 (478)
T ss_pred HHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHH
Confidence 344444444444432 33344445566666666665521 12223 3457889999999998873221
Q ss_pred -hHHhhccCCCCCCCcCEEEccCCcCccC-----CCCCCCC-CCCcEEEccCccCCCcccc----ccccCCCCCEEECCC
Q 002556 282 -EFIQNLSSGCTVNSLEGLCLYDNDITGP-----IPDLGGF-SSLKELYLGENSLNGTINK----SLNHLFKLETLSLDG 350 (908)
Q Consensus 282 -~~l~~l~~~~~l~~L~~L~L~~n~l~~~-----~~~l~~l-~~L~~L~Ls~n~l~~~~~~----~l~~l~~L~~L~L~~ 350 (908)
..+...+ ..+..+++..|++... .|.+..+ ..+++++++.|.++..... .+..++.++.+.++.
T Consensus 225 ~~~l~~~~-----~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~ 299 (478)
T KOG4308|consen 225 DEVLASGE-----SLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSN 299 (478)
T ss_pred HHHHhccc-----hhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhccc
Confidence 2222223 1377799999998643 1225555 7889999999999865443 455678899999999
Q ss_pred CcccCc
Q 002556 351 NSFTGV 356 (908)
Q Consensus 351 n~l~~~ 356 (908)
|.+...
T Consensus 300 n~l~~~ 305 (478)
T KOG4308|consen 300 NPLTDY 305 (478)
T ss_pred CccccH
Confidence 988743
No 76
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=89.85 E-value=0.017 Score=56.91 Aligned_cols=84 Identities=24% Similarity=0.200 Sum_probs=69.2
Q ss_pred cccccEEEccCCcccccchhhhhccccCceEeccCCcccccCCcccCCCCCCCEEeCCCCcccccCCccccccCCCCeEe
Q 002556 703 LGFVKCLDLSSNKLCGPILEEIMDLDGLIALNLSRNNLTGPISPKIGQLKSLDFLDLSRNHFSGSIPSSLVKLCGLGVLD 782 (908)
Q Consensus 703 l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~L~~L~~L~ 782 (908)
....+.||++.|++.. .-..|.-++.|..||++.|++. ..|..++++..+..+++..|..+ ..|.++..++.+++++
T Consensus 41 ~kr~tvld~~s~r~vn-~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLVN-LGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNE 117 (326)
T ss_pred cceeeeehhhhhHHHh-hccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhh
Confidence 3455789999998863 3455677888888999999987 67888899999999999888888 6888999999999999
Q ss_pred CcCCccc
Q 002556 783 LSYNNLS 789 (908)
Q Consensus 783 ls~N~l~ 789 (908)
+-.|+|.
T Consensus 118 ~k~~~~~ 124 (326)
T KOG0473|consen 118 QKKTEFF 124 (326)
T ss_pred hccCcch
Confidence 9998875
No 77
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=88.67 E-value=0.25 Score=27.61 Aligned_cols=11 Identities=55% Similarity=0.697 Sum_probs=3.2
Q ss_pred CceEeccCCcc
Q 002556 730 LIALNLSRNNL 740 (908)
Q Consensus 730 L~~L~Ls~N~l 740 (908)
|+.|+|++|++
T Consensus 3 L~~L~l~~n~L 13 (17)
T PF13504_consen 3 LRTLDLSNNRL 13 (17)
T ss_dssp -SEEEETSS--
T ss_pred cCEEECCCCCC
Confidence 33344444433
No 78
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=85.94 E-value=0.035 Score=54.80 Aligned_cols=89 Identities=17% Similarity=0.108 Sum_probs=63.8
Q ss_pred cccccccCcccEEEcCCCCCCCCCchhhhhhccCCccEEEcccccCCCCccHhhhcCCCCcEEEccCCcCCCCccccccC
Q 002556 183 IWHFNLSTSIETLDLFDNNLPSSSVYPWFLNLSRNILHLNLASNSLQGPIPEAFQHMVSLRFLALSSNELEGGIPKFFGN 262 (908)
Q Consensus 183 ~~l~~l~~~L~~LdLs~n~l~~~~~p~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~ 262 (908)
..+... ...+.||++.|++.. .-..+..+. .|..|+++.|.+. ..|..++.+..++.+++..|..+ ..|.+++.
T Consensus 36 ~ei~~~-kr~tvld~~s~r~vn--~~~n~s~~t-~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k 109 (326)
T KOG0473|consen 36 REIASF-KRVTVLDLSSNRLVN--LGKNFSILT-RLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKK 109 (326)
T ss_pred hhhhcc-ceeeeehhhhhHHHh--hccchHHHH-HHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccc
Confidence 344444 677777777776632 233444555 7777888887776 56778888888888888888777 67888888
Q ss_pred CCCCCEEEccCCCCc
Q 002556 263 MCSLNELYLLNNKLS 277 (908)
Q Consensus 263 l~~L~~L~Ls~n~l~ 277 (908)
.++++++++-.|.+.
T Consensus 110 ~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 110 EPHPKKNEQKKTEFF 124 (326)
T ss_pred cCCcchhhhccCcch
Confidence 888888888888755
No 79
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=85.27 E-value=0.66 Score=29.11 Aligned_cols=14 Identities=50% Similarity=0.584 Sum_probs=8.3
Q ss_pred CCCCEEeCCCCccc
Q 002556 752 KSLDFLDLSRNHFS 765 (908)
Q Consensus 752 ~~L~~L~Ls~N~l~ 765 (908)
++|++|+|++|+++
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 45566666666665
No 80
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=85.27 E-value=0.66 Score=29.11 Aligned_cols=14 Identities=50% Similarity=0.584 Sum_probs=8.3
Q ss_pred CCCCEEeCCCCccc
Q 002556 752 KSLDFLDLSRNHFS 765 (908)
Q Consensus 752 ~~L~~L~Ls~N~l~ 765 (908)
++|++|+|++|+++
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 45566666666665
No 81
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=82.01 E-value=0.93 Score=28.40 Aligned_cols=17 Identities=41% Similarity=0.513 Sum_probs=11.1
Q ss_pred cccCceEeccCCccccc
Q 002556 727 LDGLIALNLSRNNLTGP 743 (908)
Q Consensus 727 l~~L~~L~Ls~N~l~~~ 743 (908)
+++|+.|+|++|+|+..
T Consensus 1 L~~L~~L~L~~N~l~~l 17 (26)
T smart00370 1 LPNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCCEEECCCCcCCcC
Confidence 35667777777777733
No 82
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=82.01 E-value=0.93 Score=28.40 Aligned_cols=17 Identities=41% Similarity=0.513 Sum_probs=11.1
Q ss_pred cccCceEeccCCccccc
Q 002556 727 LDGLIALNLSRNNLTGP 743 (908)
Q Consensus 727 l~~L~~L~Ls~N~l~~~ 743 (908)
+++|+.|+|++|+|+..
T Consensus 1 L~~L~~L~L~~N~l~~l 17 (26)
T smart00369 1 LPNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCCEEECCCCcCCcC
Confidence 35667777777777733
No 83
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=81.67 E-value=0.31 Score=29.99 Aligned_cols=15 Identities=40% Similarity=0.614 Sum_probs=6.2
Q ss_pred CCCCEEeCCCCcccc
Q 002556 752 KSLDFLDLSRNHFSG 766 (908)
Q Consensus 752 ~~L~~L~Ls~N~l~~ 766 (908)
++|++|+|++|+++.
T Consensus 2 ~~L~~L~l~~n~i~~ 16 (24)
T PF13516_consen 2 PNLETLDLSNNQITD 16 (24)
T ss_dssp TT-SEEE-TSSBEHH
T ss_pred CCCCEEEccCCcCCH
Confidence 344455555555443
No 84
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=79.69 E-value=1.1 Score=27.51 Aligned_cols=19 Identities=26% Similarity=0.314 Sum_probs=8.6
Q ss_pred CCCCEEEccCCCCccchhh
Q 002556 264 CSLNELYLLNNKLSGQLSE 282 (908)
Q Consensus 264 ~~L~~L~Ls~n~l~~~~~~ 282 (908)
++|++|+|++|++++....
T Consensus 2 ~~L~~L~l~~n~i~~~g~~ 20 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGAS 20 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHH
Confidence 4555555555555544333
No 85
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.23 E-value=0.33 Score=47.37 Aligned_cols=33 Identities=24% Similarity=0.382 Sum_probs=15.9
Q ss_pred CcEEecCCCcCCCCCchhHhhcCCCCCCEEEccCC
Q 002556 139 LRHLDLSCVNLTKSSDWFQVVANLHYLKSLVLRSC 173 (908)
Q Consensus 139 L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n 173 (908)
++.+|-++..|... -.+.+.+++.++.|.+.+|
T Consensus 103 IeaVDAsds~I~~e--Gle~L~~l~~i~~l~l~~c 135 (221)
T KOG3864|consen 103 IEAVDASDSSIMYE--GLEHLRDLRSIKSLSLANC 135 (221)
T ss_pred EEEEecCCchHHHH--HHHHHhccchhhhheeccc
Confidence 45555555555431 1344445555555555554
No 86
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.92 E-value=0.66 Score=45.37 Aligned_cols=38 Identities=18% Similarity=0.307 Sum_probs=23.8
Q ss_pred CeEEEeecCCCcccchhhhhHHhhcCCCCCcEEecCCCcCCC
Q 002556 110 HVKVLNLRTSDYEFARRKFLKEWLSHLSSLRHLDLSCVNLTK 151 (908)
Q Consensus 110 ~v~~l~L~~~~l~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~ 151 (908)
.|.++|-++..+.+.. -+.+..++.++.|.+..|.--+
T Consensus 102 ~IeaVDAsds~I~~eG----le~L~~l~~i~~l~l~~ck~~d 139 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEG----LEHLRDLRSIKSLSLANCKYFD 139 (221)
T ss_pred eEEEEecCCchHHHHH----HHHHhccchhhhheeccccchh
Confidence 4777777776665443 1336677777777777765443
No 87
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=74.98 E-value=1.5 Score=58.66 Aligned_cols=46 Identities=26% Similarity=0.260 Sum_probs=38.7
Q ss_pred eCCCCcccccCCccccccCCCCeEeCcCCcccccCCCCcccccccc
Q 002556 758 DLSRNHFSGSIPSSLVKLCGLGVLDLSYNNLSGKIPLGTQLQSFNA 803 (908)
Q Consensus 758 ~Ls~N~l~~~ip~~l~~L~~L~~L~ls~N~l~g~iP~~~~~~~~~~ 803 (908)
||++|+|+..-+..|..+++|+.|+|++|++.|.|...+...|+..
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~L~WL~~WL~~ 46 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGLARLPRWAEE 46 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccccccccHHHHHHHHh
Confidence 6889999977777888899999999999999999998776666643
No 88
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=65.84 E-value=5.1 Score=25.26 Aligned_cols=15 Identities=47% Similarity=0.660 Sum_probs=10.2
Q ss_pred CCCCCEEeCCCCccc
Q 002556 751 LKSLDFLDLSRNHFS 765 (908)
Q Consensus 751 l~~L~~L~Ls~N~l~ 765 (908)
+++|+.|+|++|+|+
T Consensus 1 L~~L~~L~L~~NkI~ 15 (26)
T smart00365 1 LTNLEELDLSQNKIK 15 (26)
T ss_pred CCccCEEECCCCccc
Confidence 356777777777775
No 89
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=63.81 E-value=37 Score=37.98 Aligned_cols=59 Identities=19% Similarity=0.244 Sum_probs=28.6
Q ss_pred ceEEEccCCcccCcCCcc---cccCCCCCEEECCCCcCcc----cCCCCcCCCCCccEEEccCccc
Q 002556 511 WNIFDLSSNLLSGELPDC---WLNFNSLFILNLANNSFSG----KIPDSMGFLHNIRTLSLNNNRL 569 (908)
Q Consensus 511 L~~L~Ls~n~l~~~~p~~---l~~l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~Ls~N~l 569 (908)
+..+.++.+.+....... ...-+.+..|++++|.... .+|.....-..++....+.|..
T Consensus 415 l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~p 480 (553)
T KOG4242|consen 415 LAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNLP 480 (553)
T ss_pred ccCcccCCCcccccHHHHHHhhccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCCc
Confidence 444555555554322221 2233456777777776542 2333444444555555555544
No 90
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=61.20 E-value=5.7 Score=24.99 Aligned_cols=13 Identities=38% Similarity=0.560 Sum_probs=6.8
Q ss_pred CCCEEeCCCCccc
Q 002556 753 SLDFLDLSRNHFS 765 (908)
Q Consensus 753 ~L~~L~Ls~N~l~ 765 (908)
+|+.|++++|+|+
T Consensus 3 ~L~~L~vs~N~Lt 15 (26)
T smart00364 3 SLKELNVSNNQLT 15 (26)
T ss_pred ccceeecCCCccc
Confidence 3455555555554
No 91
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=53.84 E-value=10 Score=24.28 Aligned_cols=14 Identities=50% Similarity=0.558 Sum_probs=8.7
Q ss_pred CCCCEEeCCCCccc
Q 002556 752 KSLDFLDLSRNHFS 765 (908)
Q Consensus 752 ~~L~~L~Ls~N~l~ 765 (908)
++|++|||++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 35666666666664
No 92
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=50.10 E-value=69 Score=35.95 Aligned_cols=139 Identities=17% Similarity=0.008 Sum_probs=63.2
Q ss_pred ccceEEEccCCcccCcCCcccccC---CCCCEEECCCCcCc---ccCCCCcCCCCCccEEEccCccccc----cCCc---
Q 002556 509 NTWNIFDLSSNLLSGELPDCWLNF---NSLFILNLANNSFS---GKIPDSMGFLHNIRTLSLNNNRLTR----ELPS--- 575 (908)
Q Consensus 509 ~~L~~L~Ls~n~l~~~~p~~l~~l---~~L~~L~Ls~N~l~---~~~p~~~~~l~~L~~L~Ls~N~l~~----~~p~--- 575 (908)
..+.++|++.|.....+|..+..+ .-++.++.+.-.+. +.-+-..+.-+.|+..+++.|..+. +++.
T Consensus 214 ~~lteldls~n~~Kddip~~~n~~a~~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~s~skg~Egg~~~k 293 (553)
T KOG4242|consen 214 LWLTELDLSTNGGKDDIPRTLNKKAGTLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGTSPSKGEEGGGAEK 293 (553)
T ss_pred ccccccccccCCCCccchhHHHHhhhhhhhhcccccccccchhhcccccccccccccchhhhccCCCCcccccccccccc
Confidence 445566666666665555443222 23455555554332 1112223444566666666665431 1222
Q ss_pred -CccCCCCCcEEEccCCcccccCchhhhhc-----ccccceeecCCCcccccc-chhhhcCCCCCEEEccCCCCCcCchh
Q 002556 576 -SLKNCSQLRVLDLRNNALFGEIPIWIGGN-----LQNLIVLSLKSNNFHGNI-PFQLCYLAFIQVLDLSLNNISGKIPK 648 (908)
Q Consensus 576 -~l~~l~~L~~L~Ls~N~l~~~ip~~~~~~-----l~~L~~L~L~~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~g~ip~ 648 (908)
.++.-.++ .|++..+....+-+..+.-. -..=-.++++.|...+.- -..-.+=..+++|++++|++.|..-.
T Consensus 294 ~~fS~~~sg-hln~~~~~~psE~lks~LLgla~ne~t~g~rldl~~cp~~~a~vleaci~g~R~q~l~~rdnnldgeg~~ 372 (553)
T KOG4242|consen 294 DTFSPDPSG-HLNSRPRYTPSEKLKSMLLGLAENEATLGARLDLRRCPLERAEVLEACIFGQRVQVLLQRDNNLDGEGGA 372 (553)
T ss_pred cccCcCccc-ccccccccCchhhhhhhhcccccccccccccCChhhccccccchhhccccceeeeEeecccccccccccc
Confidence 23333455 55655554433322221100 011123555555554321 11111123478888888888766543
No 93
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=40.20 E-value=23 Score=40.40 Aligned_cols=82 Identities=22% Similarity=0.169 Sum_probs=44.7
Q ss_pred CCCCCCEEEccCCCCCCCCCCccccccccCcccEEEcCCC--CCCCCCchhhhhhcc-CCccEEEcccccCCCCcc--H-
Q 002556 161 NLHYLKSLVLRSCALPPINPSFIWHFNLSTSIETLDLFDN--NLPSSSVYPWFLNLS-RNILHLNLASNSLQGPIP--E- 234 (908)
Q Consensus 161 ~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~~L~~LdLs~n--~l~~~~~p~~~~~l~-~~L~~L~Ls~n~l~~~~p--~- 234 (908)
+.+.+..++|++|++...... ..+....|+|..|+|++| .+.. -.++.++. ..|++|-+.+|.+....- .
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~-sslsq~apklk~L~LS~N~~~~~~---~~el~K~k~l~Leel~l~GNPlc~tf~~~s~ 291 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDAL-SSLSQIAPKLKTLDLSHNHSKISS---ESELDKLKGLPLEELVLEGNPLCTTFSDRSE 291 (585)
T ss_pred CCcceeeeecccchhhchhhh-hHHHHhcchhheeecccchhhhcc---hhhhhhhcCCCHHHeeecCCccccchhhhHH
Confidence 456666667777766543221 333333477888888877 3322 22222221 157788888887764421 1
Q ss_pred hh----hcCCCCcEEE
Q 002556 235 AF----QHMVSLRFLA 246 (908)
Q Consensus 235 ~l----~~l~~L~~L~ 246 (908)
.+ .-+|+|..||
T Consensus 292 yv~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 292 YVSAIRELFPKLLRLD 307 (585)
T ss_pred HHHHHHHhcchheeec
Confidence 11 2467777765
No 94
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=28.22 E-value=39 Score=38.62 Aligned_cols=39 Identities=28% Similarity=0.268 Sum_probs=20.0
Q ss_pred cCCCCcEEEccCC--cCCCCccccccC--CCCCCEEEccCCCCcc
Q 002556 238 HMVSLRFLALSSN--ELEGGIPKFFGN--MCSLNELYLLNNKLSG 278 (908)
Q Consensus 238 ~l~~L~~L~Ls~n--~l~~~~p~~l~~--l~~L~~L~Ls~n~l~~ 278 (908)
..++|..|+|++| .+.. ..++.+ ...|++|-+.+|.+..
T Consensus 242 ~apklk~L~LS~N~~~~~~--~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 242 IAPKLKTLDLSHNHSKISS--ESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred hcchhheeecccchhhhcc--hhhhhhhcCCCHHHeeecCCcccc
Confidence 3455666666666 2221 122222 2356777777777653
No 95
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=27.07 E-value=79 Score=31.48 Aligned_cols=39 Identities=18% Similarity=0.127 Sum_probs=15.8
Q ss_pred CcccEEEcCCCCCCCCCchhhhhhccCCccEEEcccccCC
Q 002556 190 TSIETLDLFDNNLPSSSVYPWFLNLSRNILHLNLASNSLQ 229 (908)
Q Consensus 190 ~~L~~LdLs~n~l~~~~~p~~~~~l~~~L~~L~Ls~n~l~ 229 (908)
.+|+.=|+++-.+.- .+.....-++.+++--.|.+|++.
T Consensus 171 a~lerADl~gsil~c-A~L~~v~~lcaN~eGA~L~gcNfe 209 (302)
T KOG1665|consen 171 AKLERADLEGSILHC-AILREVEMLCANAEGASLKGCNFE 209 (302)
T ss_pred hhhcccccccchhhh-hhhhhhhheecccccccccCcCCC
Confidence 344444444443332 222233333334444445555443
No 96
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=23.97 E-value=51 Score=20.44 Aligned_cols=11 Identities=36% Similarity=0.643 Sum_probs=5.3
Q ss_pred CCCCEEEccCC
Q 002556 163 HYLKSLVLRSC 173 (908)
Q Consensus 163 ~~L~~L~Ls~n 173 (908)
++|++|+|++|
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 34455555544
No 97
>PF15102 TMEM154: TMEM154 protein family
Probab=22.97 E-value=71 Score=29.77 Aligned_cols=19 Identities=11% Similarity=0.052 Sum_probs=9.6
Q ss_pred HHHHHHHhhhhhccccchh
Q 002556 861 VGFWGVCGTLMLNRSWRYG 879 (908)
Q Consensus 861 ~~~~~~~~~~~~~~~~~~~ 879 (908)
+.++++++.++++||||.+
T Consensus 70 lLLl~vV~lv~~~kRkr~K 88 (146)
T PF15102_consen 70 LLLLSVVCLVIYYKRKRTK 88 (146)
T ss_pred HHHHHHHHheeEEeecccC
Confidence 3333344444556777653
No 98
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=21.47 E-value=47 Score=28.77 Aligned_cols=9 Identities=0% Similarity=0.357 Sum_probs=3.5
Q ss_pred eeehhHHHH
Q 002556 852 YVSLTLGFI 860 (908)
Q Consensus 852 ~~~~~~~~~ 860 (908)
+++++++.+
T Consensus 68 iagi~vg~~ 76 (96)
T PTZ00382 68 IAGISVAVV 76 (96)
T ss_pred EEEEEeehh
Confidence 344444333
Done!