Query 002556
Match_columns 908
No_of_seqs 648 out of 5570
Neff 9.4
Searched_HMMs 29240
Date Tue Mar 26 22:20:12 2013
Command hhsearch -i /local_scratch/syshi/lefta3m2/002556.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H2_54-57//hhsearch_pdb/002556hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 1.0 1 1 753.3 42.7 715 60-826 7-753 (768)
2 3rgz_A Protein brassinosteroid 1.0 1 1 580.4 40.8 616 138-795 51-699 (768)
3 1ziw_A TOLL-like receptor 3; i 1.0 1 1 499.5 46.4 608 137-827 25-657 (680)
4 3j0a_A TOLL-like receptor 5; m 1.0 1 1 474.4 39.6 546 136-828 23-595 (844)
5 1ziw_A TOLL-like receptor 3; i 1.0 1 1 468.7 46.6 593 141-814 8-624 (680)
6 3t6q_A CD180 antigen; protein- 1.0 1 1 460.2 37.7 531 137-803 33-574 (606)
7 3vq2_A TLR4, TOLL-like recepto 1.0 1 1 451.4 33.7 552 137-827 32-591 (606)
8 3j0a_A TOLL-like receptor 5; m 1.0 1 1 440.5 37.9 511 162-817 23-565 (844)
9 4eco_A Uncharacterized protein 1.0 1 1 439.2 25.7 509 61-791 26-602 (636)
10 4ecn_A Leucine-rich repeat pro 1.0 1 1 430.4 30.6 83 59-151 263-362 (876)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=753.31 Aligned_cols=715 Identities=30% Similarity=0.410 Sum_probs=504.2
Q ss_pred CCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHCCCCCC
Q ss_conf 88988879999999832744757878988889999998756510289999769995047875542011237762179887
Q 002556 60 IRCVDEEREALLTFRQSLVDEYGILSSWGREDGKRDCCKWRGVRCSNTTGHVKVLNLRTSDYEFARRKFLKEWLSHLSSL 139 (908)
Q Consensus 60 ~~c~~~~~~aLl~~k~~~~~~~~~l~~W~~~~~~~~~C~w~gv~C~~~~~~V~~l~L~~~~~~~~~~~~~~~~l~~l~~L 139 (908)
+.+.++|++||++||+++.||. .+++|. .++|||.|+||+|+ .+||++++|++.++.|.... .+..+..++.|
T Consensus 7 ~~~~~~~~~all~~k~~~~~~~-~l~~W~---~~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~-l~~~l~~L~~L 79 (768)
T 3rgz_A 7 SQSLYREIHQLISFKDVLPDKN-LLPDWS---SNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSA-VSSSLLSLTGL 79 (768)
T ss_dssp -CCHHHHHHHHHHHHTTCSCTT-SSTTCC---TTSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHH-HHHHTTTCTTC
T ss_pred CCCCHHHHHHHHHHHHHCCCCC-CCCCCC---CCCCCCCCCCEEEC--CCCEEEEECCCCCCCCCCCC-CCHHHHCCCCC
T ss_conf 6687899999999996678962-146878---99987688413878--99278987789986775576-69657316802
Q ss_pred CEEECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHH-HHCCCCC
Q ss_conf 678658875899884468613799988998268999999997000135567311998679999999931566-4124886
Q 002556 140 RHLDLSCVNLTKSSDWFQVVANLHYLKSLVLRSCALPPINPSFIWHFNLSTSIETLDLFDNNLPSSSVYPWF-LNLSRNI 218 (908)
Q Consensus 140 ~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~~L~~LdLs~n~l~~~~~~~~~-~~l~~~L 218 (908)
+.++++.+.+.. ++..++++++|++|+|++|.+.+.+|....++++ ++|++|++++|.+.+ ..|..+ .++. +|
T Consensus 80 ~~l~~~~~~~~~---l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l-~~L~~L~Ls~n~l~~-~~~~~~~~~l~-~L 153 (768)
T 3rgz_A 80 ESLFLSNSHING---SVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSC-SGLKFLNVSSNTLDF-PGKVSGGLKLN-SL 153 (768)
T ss_dssp CEEECTTSCEEE---CCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGC-TTCCEEECCSSEEEC-CSSCCSCCCCT-TC
T ss_pred CCCCCCCCCCCC---CCHHHCCCCCCCEEECCCCCCCCCCCCHHHHHCC-CCCCEEECCCCCCCC-CCCHHHHCCCC-CC
T ss_conf 246786888678---7033245788998989898578707896787278-899989896882677-47977856388-99
Q ss_pred CEEECCCCCCCCCCCHH---HHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHCCCCCCCCC
Q ss_conf 68982266478986076---522999969985587478884000139999989985687786630367852068877798
Q 002556 219 LHLNLASNSLQGPIPEA---FQHMVSLRFLALSSNELEGGIPKFFGNMCSLNELYLLNNKLSGQLSEFIQNLSSGCTVNS 295 (908)
Q Consensus 219 ~~L~Ls~n~l~~~~p~~---l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~~~~ 295 (908)
++|++++|.+.+..+.. +.++++|++|++++|.+++..+. ..+++|++|++++|.+.+.+|. +.+++ +
T Consensus 154 ~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~-l~~l~------~ 224 (768)
T 3rgz_A 154 EVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIPF-LGDCS------A 224 (768)
T ss_dssp SEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--TTCTTCCEEECCSSCCCSCCCB-CTTCC------S
T ss_pred CEEECCCCCCCCCCCHHHHHHCCCCCCCEEECCCCCCCCCCCC--CCCCCCCEEECCCCCCCCCCCC-CCCCC------C
T ss_conf 9898979835885871556643589889898978803465784--5478689898928827887711-12699------9
Q ss_pred CCEEECCCCCCCCCCCC-CCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCEEECC
Q ss_conf 57898458967467999-88988875998458658973410000479998897778766676673432199999989787
Q 002556 296 LEGLCLYDNDITGPIPD-LGGFSSLKELYLGENSLNGTINKSLNHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLYLA 374 (908)
Q Consensus 296 L~~L~L~~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~ 374 (908)
|++|++++|.+.+.+|. +..+++|++|++++|.+++..|.. .+++|+.|++++|.+.+.+|......+++|++|+++
T Consensus 225 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls 302 (768)
T 3rgz_A 225 LQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLS 302 (768)
T ss_dssp CCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECC
T ss_pred CCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCC--CCCCCCEEECCCCCCCCCCCHHHHHHCCCCCEEECC
T ss_conf 998979488587816577744888898989888665716724--368789897917855772588888446868899896
Q ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCCCCHHHH-HHCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 89873225887678877658984688799984687-40374565766028534588522433102366775065653568
Q 002556 375 NNPLTMKLSHDWVPPFQLKWLSLASCKMGPNFPKW-LRTQSQLILLDISNTGISGTVPDWFWDLSVELFFLNLSNNHIKG 453 (908)
Q Consensus 375 ~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~ 453 (908)
+|.+.+..+..+..+++|+.|++++|.+.+.+|.. +..+++|++|++++|.+.+.+|..+....++|+
T Consensus 303 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~----------- 371 (768)
T 3rgz_A 303 GNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLL----------- 371 (768)
T ss_dssp SSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCS-----------
T ss_pred CCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHHHHCCCC-----------
T ss_conf 896778423677558776677897885257379788724888878848478437623098986322771-----------
Q ss_pred CCCCCCCCCCCCCEEEEECCCCCCCCCCC-----CCCCCEEECCCCCCCCCCCC-CCCCCCCCCEEEECCCCCCCCCCCC
Q ss_conf 78974456888728993078455889999-----99974654678858787210-0112345540897557733586780
Q 002556 454 KLPDLSFLRSDDIVVDISSNHFTGQIPPL-----PSNSTFLNLSKNKFSGSITF-LCSIIENTWNIFDLSSNLLSGELPD 527 (908)
Q Consensus 454 ~~p~~~~~~~~~~~l~ls~n~~~~~~p~~-----~~~L~~L~Ls~n~l~~~~~~-~~~~~~~~L~~L~Ls~n~l~~~~p~ 527 (908)
.+++++|.+.+.+|.. ...++.|++++|++++.++. +... +.|+.|++++|.+++.+|.
T Consensus 372 -------------~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l--~~L~~L~Ls~N~l~~~~p~ 436 (768)
T 3rgz_A 372 -------------TLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNC--SELVSLHLSFNYLSGTIPS 436 (768)
T ss_dssp -------------EEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGC--TTCCEEECCSSEEESCCCG
T ss_pred -------------EEECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCCHHHHCC--CCCCEEECCCCCCCCCCCH
T ss_conf -------------9986278747876766653324776189897784654248777568--9879898958846685467
Q ss_pred CCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHCCCC
Q ss_conf 00069999879878984732489875899974699822860232389474399999599854870344576235520555
Q 002556 528 CWLNFNSLFILNLANNSFSGKIPDSMGFLHNIRTLSLNNNRLTRELPSSLKNCSQLRVLDLRNNALFGEIPIWIGGNLQN 607 (908)
Q Consensus 528 ~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~ 607 (908)
.+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+++.+|..+..+++|+.|++++|++.+.+|.+++ .+++
T Consensus 437 ~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~-~l~~ 515 (768)
T 3rgz_A 437 SLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG-RLEN 515 (768)
T ss_dssp GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG-GCTT
T ss_pred HHHCCCCCCEEECCCCCCCCCCCHHHCCCCCCEEEEECCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHH-CCCC
T ss_conf 774499889898978815471897882877732999019951375887881699899897539951896876885-6899
Q ss_pred CCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCHHHHCCCCCCCCCCCCC---CCCCCCCCE----------EC
Q ss_conf 63540477711222641120588877898438978768414220231131236898---623434410----------03
Q 002556 608 LIVLSLKSNNFHGNIPFQLCYLAFIQVLDLSLNNISGKIPKCFSNFSTMIQERSSD---PIIGMANRI----------WV 674 (908)
Q Consensus 608 L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~l~~~~~~~---~~~~~~~~~----------~~ 674 (908)
|++|++++|++.+.+|..+..+++|+.|++++|+++|.+|.++.....+....... +........ ..
T Consensus 516 L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (768)
T 3rgz_A 516 LAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLE 595 (768)
T ss_dssp CCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEE
T ss_pred CCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99898978943374887770889899898988846882795786042122320134542111134443222233222100
Q ss_pred CCC----CCCCC---CCCCEEEEEEECCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCC
Q ss_conf 687----53211---11230578641552111344563008976687463335042320245765864577254668816
Q 002556 675 LPG----YVYQY---RYLDNILLTWKGSEHEYKSTLGFVKCLDLSSNKLCGPILEEIMDLDGLIALNLSRNNLTGPISPK 747 (908)
Q Consensus 675 ~~~----~~~~~---~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~ 747 (908)
... ..... ..........+|..+..+..++.++.||+++|+++|.+|..+++++.|+.|+|++|+++|.+|..
T Consensus 596 ~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~ 675 (768)
T 3rgz_A 596 FQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDE 675 (768)
T ss_dssp CTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGG
T ss_pred CCCCCCHHHHCCCCCCCCCCCCCEECCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHH
T ss_conf 13556323200232110011331004627433403356657978588015558778841415787848688038878967
Q ss_pred CCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 5899999999398882663387241044798957175794522589985356555342467888968899999999999
Q 002556 748 IGQLKSLDFLDLSRNHFSGSIPSSLVKLCGLGVLDLSYNNLSGKIPLGTQLQSFNASVYAGNLELCGPPLPNQCPNEES 826 (908)
Q Consensus 748 l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~n~~lcg~~~~~~C~~~~~ 826 (908)
++++++|+.|||++|+++|.+|..+..+++|++||+++|+++|.||.+++|.+|...+|.||++|||.|+. .|.....
T Consensus 676 l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~-~C~~~~~ 753 (768)
T 3rgz_A 676 VGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP-RCDPSNA 753 (768)
T ss_dssp GGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSC-CCCSCC-
T ss_pred HHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCHHHCCCCHHHHCCCCHHCCCCCC-CCCCCCC
T ss_conf 84777899898978802386886775788789787968815560899601024897775698321088776-7888766
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=580.45 Aligned_cols=616 Identities=30% Similarity=0.379 Sum_probs=406.8
Q ss_pred CCCEEECCCCCCCCC-CCHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHH--HHHHC
Q ss_conf 876786588758998-844686137999889982689999999970001355673119986799999999315--66412
Q 002556 138 SLRHLDLSCVNLTKS-SDWFQVVANLHYLKSLVLRSCALPPINPSFIWHFNLSTSIETLDLFDNNLPSSSVYP--WFLNL 214 (908)
Q Consensus 138 ~L~~L~Ls~n~l~~~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~~L~~LdLs~n~l~~~~~~~--~~~~l 214 (908)
.++.|+++++.+.+. ..+++.+.++++|+.++++.+.+... | ..+.++ ++|++||+++|.+.+ .+|. .++++
T Consensus 51 ~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~~l-~--~~~~~l-~~L~~L~Ls~n~l~~-~~~~~~~l~~l 125 (768)
T 3rgz_A 51 KVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGS-V--SGFKCS-ASLTSLDLSRNSLSG-PVTTLTSLGSC 125 (768)
T ss_dssp EEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEEEC-C--CCCCCC-TTCCEEECCSSEEEE-EGGGGGGGGGC
T ss_pred CEEEEECCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCC-C--HHHCCC-CCCCEEECCCCCCCC-CCCCHHHHHCC
T ss_conf 278987789986775576696573168022467868886787-0--332457-889989898985787-07896787278
Q ss_pred CCCCCEEECCCCCCCCCCCHHH-HCCCCCCEEECCCCCCCCCCCCC---CCCCCCCCEEECCCCCCCCCHHHHHHHCCCC
Q ss_conf 4886689822664789860765-22999969985587478884000---1399999899856877866303678520688
Q 002556 215 SRNILHLNLASNSLQGPIPEAF-QHMVSLRFLALSSNELEGGIPKF---FGNMCSLNELYLLNNKLSGQLSEFIQNLSSG 290 (908)
Q Consensus 215 ~~~L~~L~Ls~n~l~~~~p~~l-~~l~~L~~L~Ls~n~l~~~~p~~---l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~ 290 (908)
. +|++|++++|.+.+..|..+ .++++|++|++++|.+++..|.. +.++++|++|++++|.+.+..+. ..++
T Consensus 126 ~-~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~-- 200 (768)
T 3rgz_A 126 S-GLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCV-- 200 (768)
T ss_dssp T-TCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--TTCT--
T ss_pred C-CCCEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCHHHHHHCCCCCCCEEECCCCCCCCCCCC--CCCC--
T ss_conf 8-9998989688267747977856388999898979835885871556643589889898978803465784--5478--
Q ss_pred CCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCE
Q ss_conf 77798578984589674679998898887599845865897341000047999889777876667667343219999998
Q 002556 291 CTVNSLEGLCLYDNDITGPIPDLGGFSSLKELYLGENSLNGTINKSLNHLFKLETLSLDGNSFTGVISETFFSNMSNLQM 370 (908)
Q Consensus 291 ~~~~~L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~ 370 (908)
+|++|++++|.+.+.+|.+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+.+|. ..+++|++
T Consensus 201 ----~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~---~~l~~L~~ 273 (768)
T 3rgz_A 201 ----NLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP---LPLKSLQY 273 (768)
T ss_dssp ----TCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCC---CCCTTCCE
T ss_pred ----CCCEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCC---CCCCCCCE
T ss_conf ----68989892882788771112699999897948858781657774488889898988866571672---43687898
Q ss_pred EECCCCCCCCCCCCCCCCC-CCCCEEECCCCCCCCCHHHHHHCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 9787898732258876788-776589846887999846874037456576602853458852243310236677506565
Q 002556 371 LYLANNPLTMKLSHDWVPP-FQLKWLSLASCKMGPNFPKWLRTQSQLILLDISNTGISGTVPDWFWDLSVELFFLNLSNN 449 (908)
Q Consensus 371 L~L~~n~l~~~~~~~~~~~-~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n 449 (908)
|++++|.+.+..+..+... ++|+.|++++|.+.+..|..+..+++|++|++++|.+.+.+|.......++|+.
T Consensus 274 L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~------ 347 (768)
T 3rgz_A 274 LSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKV------ 347 (768)
T ss_dssp EECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCE------
T ss_pred EECCCCCCCCCCCHHHHHHCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCE------
T ss_conf 97917855772588888446868899896896778423677558776677897885257379788724888878------
Q ss_pred CCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCC----CCCCCEEECCCCCCCCCCCC-CCCCCCCCCEEEECCCCCCCCC
Q ss_conf 356878974456888728993078455889999----99974654678858787210-0112345540897557733586
Q 002556 450 HIKGKLPDLSFLRSDDIVVDISSNHFTGQIPPL----PSNSTFLNLSKNKFSGSITF-LCSIIENTWNIFDLSSNLLSGE 524 (908)
Q Consensus 450 ~l~~~~p~~~~~~~~~~~l~ls~n~~~~~~p~~----~~~L~~L~Ls~n~l~~~~~~-~~~~~~~~L~~L~Ls~n~l~~~ 524 (908)
+++++|.+.+.+|.. ..+++.|++++|++.+.++. ++....+.|+.|++++|.+++.
T Consensus 348 ------------------L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~ 409 (768)
T 3rgz_A 348 ------------------LDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGK 409 (768)
T ss_dssp ------------------EECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEE
T ss_pred ------------------EECCCCCCCCCCCHHHHHHHCCCCEEECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCC
T ss_conf ------------------84847843762309898632277199862787478767666533247761898977846542
Q ss_pred CCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHC
Q ss_conf 78000069999879878984732489875899974699822860232389474399999599854870344576235520
Q 002556 525 LPDCWLNFNSLFILNLANNSFSGKIPDSMGFLHNIRTLSLNNNRLTRELPSSLKNCSQLRVLDLRNNALFGEIPIWIGGN 604 (908)
Q Consensus 525 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~ 604 (908)
+|..+..+++|+.|++++|.+++.+|..+..+++|+.|++++|.+++.+|..+..+++|+.|++++|++.+.+|.++. .
T Consensus 410 ~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~-~ 488 (768)
T 3rgz_A 410 IPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS-N 488 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG-G
T ss_pred CCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHCCCCCCEEEEECCCCCCCCCCHHHH-C
T ss_conf 487775689879898958846685467774499889898978815471897882877732999019951375887881-6
Q ss_pred CCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCHHHHCCCCCCCCCCCCCCCC--CCCCCEECCCCCC---
Q ss_conf 55563540477711222641120588877898438978768414220231131236898623--4344100368753---
Q 002556 605 LQNLIVLSLKSNNFHGNIPFQLCYLAFIQVLDLSLNNISGKIPKCFSNFSTMIQERSSDPII--GMANRIWVLPGYV--- 679 (908)
Q Consensus 605 l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~l~~~~~~~~~~--~~~~~~~~~~~~~--- 679 (908)
+++|++|++++|++.+.+|.++..+++|+.|++++|+++|.+|..+.+++.+..+....... .....++......
T Consensus 489 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~ 568 (768)
T 3rgz_A 489 CTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAAN 568 (768)
T ss_dssp CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCS
T ss_pred CCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCHHHHCCCCHHHHH
T ss_conf 99899897539951896876885689999898978943374887770889899898988846882795786042122320
Q ss_pred ----CCCCCCC-----------EEEEEEECCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCC
Q ss_conf ----2111123-----------0578641552111344563008976687463335042320245765864577254668
Q 002556 680 ----YQYRYLD-----------NILLTWKGSEHEYKSTLGFVKCLDLSSNKLCGPILEEIMDLDGLIALNLSRNNLTGPI 744 (908)
Q Consensus 680 ----~~~~~~~-----------~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~i 744 (908)
..+.+.. .......+........+..+..++++.|.+.|.+|..++.++.|+.|||++|+++|.+
T Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~i 648 (768)
T 3rgz_A 569 FIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYI 648 (768)
T ss_dssp TTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCEECCCCCHHHHCCCCCCEEECCCCCCCCCC
T ss_conf 13454211113444322223322210013556323200232110011331004627433403356657978588015558
Q ss_pred CCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCC
Q ss_conf 816589999999939888266338724104479895717579452258998
Q 002556 745 SPKIGQLKSLDFLDLSRNHFSGSIPSSLVKLCGLGVLDLSYNNLSGKIPLG 795 (908)
Q Consensus 745 p~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~ 795 (908)
|..+++++.|+.|+|++|+++|.+|..++.++.|+.||+++|+++|.+|..
T Consensus 649 p~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~ 699 (768)
T 3rgz_A 649 PKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQA 699 (768)
T ss_dssp CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGG
T ss_pred CHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHH
T ss_conf 778841415787848688038878967847778998989788023868867
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=1.00 E-value=1 Score=499.50 Aligned_cols=608 Identities=22% Similarity=0.218 Sum_probs=463.9
Q ss_pred CCCCEEECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHCCC
Q ss_conf 88767865887589988446861379998899826899999999700013556731199867999999993156641248
Q 002556 137 SSLRHLDLSCVNLTKSSDWFQVVANLHYLKSLVLRSCALPPINPSFIWHFNLSTSIETLDLFDNNLPSSSVYPWFLNLSR 216 (908)
Q Consensus 137 ~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~~L~~LdLs~n~l~~~~~~~~~~~l~~ 216 (908)
+++++|++++|.+.+.. +..+.++++|++|++++|.+.+..| ..+.++ ++|++|++++|.+.. ..+..+.++.
T Consensus 25 ~~l~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~~~l-~~L~~L~L~~n~l~~-l~~~~~~~l~- 97 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLP--AANFTRYSQLTSLDVGFNTISKLEP--ELCQKL-PMLKVLNLQHNELSQ-LSDKTFAFCT- 97 (680)
T ss_dssp TTCSEEECCSSCCCCCC--GGGGGGGTTCSEEECCSSCCCCCCT--THHHHC-TTCCEEECCSSCCCC-CCTTTTTTCT-
T ss_pred CCCCEEECCCCCCCCCC--HHHHHCCCCCCEEECCCCCCCCCCH--HHHHCC-CCCCEEECCCCCCCC-CCHHHHCCCC-
T ss_conf 88768889899778759--7887178767588788996485697--787406-676888899985675-6854530388-
Q ss_pred CCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHCCCCCCCCCC
Q ss_conf 86689822664789860765229999699855874788840001399999899856877866303678520688777985
Q 002556 217 NILHLNLASNSLQGPIPEAFQHMVSLRFLALSSNELEGGIPKFFGNMCSLNELYLLNNKLSGQLSEFIQNLSSGCTVNSL 296 (908)
Q Consensus 217 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~~~~L 296 (908)
+|++|++++|.+.+..+..|+++++|++|++++|.+++..|..+..+++|++|++++|.+++..+..+.... ..+|
T Consensus 98 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~----~~~L 173 (680)
T 1ziw_A 98 NLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFA----NSSL 173 (680)
T ss_dssp TCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGT----TCEE
T ss_pred CCCEEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCHHHHHCCC----CCCC
T ss_conf 889898989966853966741567888898989952466721112455677797458843652978862446----6632
Q ss_pred CEEECCCCCCCCCCCC-CCCCCCCCEEECCCCCCCCCCCCCCC---CCCCCCEEECCCCCCCCCCCHHHHCCCC--CCCE
Q ss_conf 7898458967467999-88988875998458658973410000---4799988977787666766734321999--9998
Q 002556 297 EGLCLYDNDITGPIPD-LGGFSSLKELYLGENSLNGTINKSLN---HLFKLETLSLDGNSFTGVISETFFSNMS--NLQM 370 (908)
Q Consensus 297 ~~L~L~~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~---~l~~L~~L~L~~n~l~~~~~~~~l~~l~--~L~~ 370 (908)
+.|++++|.+.+..+. +..+++|+.+++.++.+.......+. ..++|+.|++++|.+.+..+. .+..++ +|+.
T Consensus 174 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~-~~~~l~~~~L~~ 252 (680)
T 1ziw_A 174 KKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNT-TFLGLKWTNLTM 252 (680)
T ss_dssp SEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTT-TTGGGGGSCCCE
T ss_pred CEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCCCCHH-HHHCCCCCCCCE
T ss_conf 1798889825655815553223445543056646805677787775315100887457743646866-751467677888
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHCCCCCCEEEECCCCCCCCCC-----H---HHHHHHHHHH
Q ss_conf 9787898732258876788776589846887999846874037456576602853458852-----2---4331023667
Q 002556 371 LYLANNPLTMKLSHDWVPPFQLKWLSLASCKMGPNFPKWLRTQSQLILLDISNTGISGTVP-----D---WFWDLSVELF 442 (908)
Q Consensus 371 L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~-----~---~~~~~~~~L~ 442 (908)
|++++|.+....+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|...+.++ . .....+++|+
T Consensus 253 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~ 332 (680)
T 1ziw_A 253 LDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLE 332 (680)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCC
T ss_pred EECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCHHHHCCCCCCCCCCCCHHHCCCCCCCC
T ss_conf 77878876756802116741056855778856765865626788855773633132133333554543865624677788
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCC---CCCCCEEECCCCCCCCCC-CC--CCCCCCCCCEEEEC
Q ss_conf 7506565356878974456888728993078455889999---999746546788587872-10--01123455408975
Q 002556 443 FLNLSNNHIKGKLPDLSFLRSDDIVVDISSNHFTGQIPPL---PSNSTFLNLSKNKFSGSI-TF--LCSIIENTWNIFDL 516 (908)
Q Consensus 443 ~L~L~~n~l~~~~p~~~~~~~~~~~l~ls~n~~~~~~p~~---~~~L~~L~Ls~n~l~~~~-~~--~~~~~~~~L~~L~L 516 (908)
.+++++|.+.+..+.. .++++.+++++|.+.... +. +.....+.++.|++
T Consensus 333 ------------------------~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L 388 (680)
T 1ziw_A 333 ------------------------HLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNL 388 (680)
T ss_dssp ------------------------EEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEEC
T ss_pred ------------------------EEECCCCCCCCCCHHHHCCCCCCCEEECCCCCHHHHHCCHHHHCCCCCCCCCEEEC
T ss_conf ------------------------88798982687885574065687289887980144323532202455686766889
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC-CCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCC-
Q ss_conf 5773358678000069999879878984732489-87589997469982286023238947439999959985487034-
Q 002556 517 SSNLLSGELPDCWLNFNSLFILNLANNSFSGKIP-DSMGFLHNIRTLSLNNNRLTRELPSSLKNCSQLRVLDLRNNALF- 594 (908)
Q Consensus 517 s~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~- 594 (908)
++|.+++..|..+..+++|+.|++++|.+.+.++ ..|..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.
T Consensus 389 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~ 468 (680)
T 1ziw_A 389 TKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKN 468 (680)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBC
T ss_pred CCCCCCEECHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEECHHHHHCCCCCCCCHHCCCCCCC
T ss_conf 99977767754420778888886778757543575532575461278448997542276455007543101101464422
Q ss_pred -CCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf -4576235520555635404777112226411205888778984389787684142202311312368986234344100
Q 002556 595 -GEIPIWIGGNLQNLIVLSLKSNNFHGNIPFQLCYLAFIQVLDLSLNNISGKIPKCFSNFSTMIQERSSDPIIGMANRIW 673 (908)
Q Consensus 595 -~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~l~~~~~~~~~~~~~~~~~ 673 (908)
+.+|..+. .+++|+.|++++|++++..+..+..+++|+.|++++|++++..+..+..
T Consensus 469 ~~~~p~~~~-~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~--------------------- 526 (680)
T 1ziw_A 469 VDSSPSPFQ-PLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPG--------------------- 526 (680)
T ss_dssp TTCSSCTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTT---------------------
T ss_pred CCCCCCCCC-CCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCC---------------------
T ss_conf 566776455-5787899989999877679446345534688858899730000000467---------------------
Q ss_pred CCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 36875321111230578641552111344563008976687463335042320245765864577254668816589999
Q 002556 674 VLPGYVYQYRYLDNILLTWKGSEHEYKSTLGFVKCLDLSSNKLCGPILEEIMDLDGLIALNLSRNNLTGPISPKIGQLKS 753 (908)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~ 753 (908)
.....+..++.|+.|++++|+++...+..|.++++|+.|++++|++++..+..|.++++
T Consensus 527 ---------------------~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~ 585 (680)
T 1ziw_A 527 ---------------------GPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVS 585 (680)
T ss_dssp ---------------------SCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred ---------------------CCCHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCC
T ss_conf ---------------------74142337998888889999788779777346667522389999777679768378988
Q ss_pred CCEEECCCCCCCCCCCCCCC-CCCCCCEEECCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99993988826633872410-447989571757945225899-853565553424678889688999999999999
Q 002556 754 LDFLDLSRNHFSGSIPSSLV-KLCGLGVLDLSYNNLSGKIPL-GTQLQSFNASVYAGNLELCGPPLPNQCPNEEST 827 (908)
Q Consensus 754 L~~L~Ls~N~l~~~ip~~l~-~l~~L~~L~ls~N~l~g~ip~-~~~~~~~~~~~~~~n~~lcg~~~~~~C~~~~~~ 827 (908)
|+.|++++|++++..|..+. .+++|+.+++++|++.|.|+. .|+..|.+.. +...-+......|..|...
T Consensus 586 L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~~~~~~~~~~~~----~~~~~~~~~~~~C~~p~~~ 657 (680)
T 1ziw_A 586 LKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINET----HTNIPELSSHYLCNTPPHY 657 (680)
T ss_dssp CCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCCCSSEECCSSCC-----------------------
T ss_pred CCEEECCCCCCCCCCHHHHCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHC----CCCCCCCCCCCEECCCHHH
T ss_conf 88898999968705966830114665779831897025776689999998736----7643466678577975598
No 4
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=474.38 Aligned_cols=546 Identities=21% Similarity=0.189 Sum_probs=358.9
Q ss_pred CCCCCEEECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCC-CCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHC
Q ss_conf 98876786588758998844686137999889982689999999-97000135567311998679999999931566412
Q 002556 136 LSSLRHLDLSCVNLTKSSDWFQVVANLHYLKSLVLRSCALPPIN-PSFIWHFNLSTSIETLDLFDNNLPSSSVYPWFLNL 214 (908)
Q Consensus 136 l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~~~l~~l~~~L~~LdLs~n~l~~~~~~~~~~~l 214 (908)
.+++++|+|++|.+... .+..+.++++|++|++++|...+.+ | ..+.++ ++|++|++++|.+.+ ..|..+.++
T Consensus 23 p~~l~~LdLs~N~i~~i--~~~~~~~l~~L~~LdLs~n~~~~~i~~--~~f~~L-~~L~~L~Ls~N~l~~-~~p~~~~~l 96 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRTV--TASSFPFLEQLQLLELGSQYTPLTIDK--EAFRNL-PNLRILDLGSSKIYF-LHPDAFQGL 96 (844)
T ss_dssp CTTCCEEEEESCCCCEE--CSSSCSSCCSCSEEEECTTCCCCEECT--TTTSSC-TTCCEEECTTCCCCE-ECTTSSCSC
T ss_pred CCCCCEEECCCCCCCCC--CHHHCCCCCCCEEEECCCCCCCCCCCH--HHHCCC-CCCCEEECCCCCCCC-CCHHHCCCC
T ss_conf 99868888877867832--966776621370886789977444197--785378-778888798995853-197671578
Q ss_pred CCCCCEEECCCCCCCCCCCHH--HHCCCCCCEEECCCCCCCCCCC-CCCCCCCCCCEEECCCCCCCCCHHHHHHHC--CC
Q ss_conf 488668982266478986076--5229999699855874788840-001399999899856877866303678520--68
Q 002556 215 SRNILHLNLASNSLQGPIPEA--FQHMVSLRFLALSSNELEGGIP-KFFGNMCSLNELYLLNNKLSGQLSEFIQNL--SS 289 (908)
Q Consensus 215 ~~~L~~L~Ls~n~l~~~~p~~--l~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l--~~ 289 (908)
. +|++|++++|.+.+..+.. +.++++|++|++++|.+++..+ ..++++++|++|++++|.+++..+..+..+ +
T Consensus 97 ~-~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~- 174 (844)
T 3j0a_A 97 F-HLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGK- 174 (844)
T ss_dssp S-SCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHC-
T ss_pred C-CCCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCEEECCCCCCCEECHHHCCCCCCC-
T ss_conf 6-65870176788973404676455667999888987864232566557638898989898984776678875355677-
Q ss_pred CCCCCCCCEEECCCCCCCCCCCC-CCCCCC------CCEEECCCCCCCCCCCCCCCCC---CCCCEEECCCCCCCCC---
Q ss_conf 87779857898458967467999-889888------7599845865897341000047---9998897778766676---
Q 002556 290 GCTVNSLEGLCLYDNDITGPIPD-LGGFSS------LKELYLGENSLNGTINKSLNHL---FKLETLSLDGNSFTGV--- 356 (908)
Q Consensus 290 ~~~~~~L~~L~L~~n~l~~~~~~-l~~l~~------L~~L~Ls~n~l~~~~~~~l~~l---~~L~~L~L~~n~l~~~--- 356 (908)
+|+.|+++.|.+.+..+. +..+++ |+.|++++|.+++..+..+... .+++.+.+..+.....
T Consensus 175 -----~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~ 249 (844)
T 3j0a_A 175 -----TLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGF 249 (844)
T ss_dssp -----SSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSC
T ss_pred -----CCCEEECCCCCCCCCCCCCHHHCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCC
T ss_conf -----503578978866655455332237722357400796578868656778887642744100112121223466444
Q ss_pred -----CCHHHHCCC--CCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHCCCCCCEEEECCCCCCCC
Q ss_conf -----673432199--9999897878987322588767887765898468879998468740374565766028534588
Q 002556 357 -----ISETFFSNM--SNLQMLYLANNPLTMKLSHDWVPPFQLKWLSLASCKMGPNFPKWLRTQSQLILLDISNTGISGT 429 (908)
Q Consensus 357 -----~~~~~l~~l--~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ 429 (908)
.....+..+ ++|+.|++++|.+....+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.
T Consensus 250 ~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~-- 327 (844)
T 3j0a_A 250 HNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLG-- 327 (844)
T ss_dssp SSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCS--
T ss_pred CCCCCCCHHHHHCCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCC--
T ss_conf 566889855652555478618989799455158634525899999989798189879688368889998989899788--
Q ss_pred CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 52243310236677506565356878974456888728993078455889999999746546788587872100112345
Q 002556 430 VPDWFWDLSVELFFLNLSNNHIKGKLPDLSFLRSDDIVVDISSNHFTGQIPPLPSNSTFLNLSKNKFSGSITFLCSIIEN 509 (908)
Q Consensus 430 ~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~~~~l~ls~n~~~~~~p~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~ 509 (908)
+..|..+. .. +
T Consensus 328 -----------------------------------------------~~~~~~~~--------------------~l--~ 338 (844)
T 3j0a_A 328 -----------------------------------------------ELYSSNFY--------------------GL--P 338 (844)
T ss_dssp -----------------------------------------------CCCSCSCS--------------------SC--T
T ss_pred -----------------------------------------------CCCHHHHC--------------------CC--C
T ss_conf -----------------------------------------------51878846--------------------89--9
Q ss_pred CCEEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECC
Q ss_conf 54089755773358678000069999879878984732489875899974699822860232389474399999599854
Q 002556 510 TWNIFDLSSNLLSGELPDCWLNFNSLFILNLANNSFSGKIPDSMGFLHNIRTLSLNNNRLTRELPSSLKNCSQLRVLDLR 589 (908)
Q Consensus 510 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~ 589 (908)
.|+.|++++|.+.+..+..+..+++|+.|++++|.+++. ..+++|+.|++++|+++ .+|.. ..+++.|+++
T Consensus 339 ~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~-~l~~~---~~~l~~L~ls 409 (844)
T 3j0a_A 339 KVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSGNKLV-TLPKI---NLTANLIHLS 409 (844)
T ss_dssp TCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEESCCCC-CCCCC---CTTCCEEECC
T ss_pred CCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCC-----CCCCCCCHHCCCCCCCC-CCCCC---CCCCCEEECC
T ss_conf 999898989987762866613788899988989977861-----68898232005899723-14554---5543122145
Q ss_pred CCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCH-HHHCCCCCCEEECCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 87034457623552055563540477711222641-12058887789843897876841422023113123689862343
Q 002556 590 NNALFGEIPIWIGGNLQNLIVLSLKSNNFHGNIPF-QLCYLAFIQVLDLSLNNISGKIPKCFSNFSTMIQERSSDPIIGM 668 (908)
Q Consensus 590 ~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~-~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~l~~~~~~~~~~~~ 668 (908)
+|++.+.-.......+++|+.|++++|++++..+. .+..+++|+.|++++|.+++..+..
T Consensus 410 ~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~------------------- 470 (844)
T 3j0a_A 410 ENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETE------------------- 470 (844)
T ss_dssp SCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSC-------------------
T ss_pred CCCCCCCCHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-------------------
T ss_conf 6753457556665127766666677871255554333566873100247777364410135-------------------
Q ss_pred CCCEECCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCC
Q ss_conf 44100368753211112305786415521113445630089766874633350423202457658645772546688165
Q 002556 669 ANRIWVLPGYVYQYRYLDNILLTWKGSEHEYKSTLGFVKCLDLSSNKLCGPILEEIMDLDGLIALNLSRNNLTGPISPKI 748 (908)
Q Consensus 669 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l 748 (908)
.....+..++.|+.|+|++|++++.+|..+..+++|+.|+|++|++++..|..+
T Consensus 471 --------------------------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~ 524 (844)
T 3j0a_A 471 --------------------------LCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDL 524 (844)
T ss_dssp --------------------------CCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCC
T ss_pred --------------------------CCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCHHHHHEEECCCCCCCCCCHHHH
T ss_conf --------------------------535554475536577788985655395570450122156999997874571011
Q ss_pred CCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 89999999939888266338724104479895717579452258998535655534246788896889999999999999
Q 002556 749 GQLKSLDFLDLSRNHFSGSIPSSLVKLCGLGVLDLSYNNLSGKIPLGTQLQSFNASVYAGNLELCGPPLPNQCPNEESTP 828 (908)
Q Consensus 749 ~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~n~~lcg~~~~~~C~~~~~~~ 828 (908)
. ++|+.||+++|++++.+|..+. +|+.+++++|++.|.|+..++..|+. .++..++|++....|..|....
T Consensus 525 ~--~~L~~L~Ls~N~l~~~~~~~~~---~L~~l~l~~Np~~C~c~~~~f~~~~~----~~~~~~~~~~~~~~C~~p~~~~ 595 (844)
T 3j0a_A 525 P--ANLEILDISRNQLLAPNPDVFV---SLSVLDITHNKFICECELSTFINWLN----HTNVTIAGPPADIYCVYPDSFS 595 (844)
T ss_dssp C--SCCCEEEEEEECCCCCCSCCCS---SCCEEEEEEECCCCSSSCCSHHHHHH----HTTTTTCCCGGGCCCSSCSSSC
T ss_pred H--CCCCEEECCCCCCCCCCHHHHC---CCCEEEECCCCCCCCCCCHHHHHHHH----HCCCCCCCCCCCCCCCCCHHHC
T ss_conf 0--0455888988847888966837---76889931997025366189999997----3685302660027557806657
No 5
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=1.00 E-value=1 Score=468.70 Aligned_cols=593 Identities=20% Similarity=0.168 Sum_probs=435.5
Q ss_pred EEECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHCCCCCCE
Q ss_conf 78658875899884468613799988998268999999997000135567311998679999999931566412488668
Q 002556 141 HLDLSCVNLTKSSDWFQVVANLHYLKSLVLRSCALPPINPSFIWHFNLSTSIETLDLFDNNLPSSSVYPWFLNLSRNILH 220 (908)
Q Consensus 141 ~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~~L~~LdLs~n~l~~~~~~~~~~~l~~~L~~ 220 (908)
.++.+++.++.. |..+. +++++|++++|.+.+.++ ..+.++ ++|++|++++|.+.+ ..|..+.++. +|++
T Consensus 8 ~~~cs~~~L~~i---p~~~~--~~l~~L~Ls~n~l~~~~~--~~~~~l-~~L~~L~Ls~n~l~~-~~~~~~~~l~-~L~~ 77 (680)
T 1ziw_A 8 VADCSHLKLTQV---PDDLP--TNITVLNLTHNQLRRLPA--ANFTRY-SQLTSLDVGFNTISK-LEPELCQKLP-MLKV 77 (680)
T ss_dssp EEECCSSCCSSC---CSCSC--TTCSEEECCSSCCCCCCG--GGGGGG-TTCSEEECCSSCCCC-CCTTHHHHCT-TCCE
T ss_pred EEECCCCCCCCC---CCCCC--CCCCEEECCCCCCCCCCH--HHHHCC-CCCCEEECCCCCCCC-CCHHHHHCCC-CCCE
T ss_conf 448777980526---41248--887688898997787597--887178-767588788996485-6977874066-7688
Q ss_pred EECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHCCCCCCCCCCCEEE
Q ss_conf 98226647898607652299996998558747888400013999998998568778663036785206887779857898
Q 002556 221 LNLASNSLQGPIPEAFQHMVSLRFLALSSNELEGGIPKFFGNMCSLNELYLLNNKLSGQLSEFIQNLSSGCTVNSLEGLC 300 (908)
Q Consensus 221 L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~~~~L~~L~ 300 (908)
|++++|.+....+..|+++++|++|++++|.+++..|..++++++|++|++++|.+++..+..+..++ +|++|+
T Consensus 78 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~------~L~~L~ 151 (680)
T 1ziw_A 78 LNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLE------NLQELL 151 (680)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCT------TCCEEE
T ss_pred EECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCCHHHCCCC------CCCEEE
T ss_conf 88999856756854530388889898989966853966741567888898989952466721112455------677797
Q ss_pred CCCCCCCCCCCC---CCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHH--HCCCCCCCEEECCC
Q ss_conf 458967467999---8898887599845865897341000047999889777876667667343--21999999897878
Q 002556 301 LYDNDITGPIPD---LGGFSSLKELYLGENSLNGTINKSLNHLFKLETLSLDGNSFTGVISETF--FSNMSNLQMLYLAN 375 (908)
Q Consensus 301 L~~n~l~~~~~~---l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~--l~~l~~L~~L~L~~ 375 (908)
+++|.+++..+. ...+++|+.|++++|.+++..+..+..+.+|+.+++.++.+........ ....++|+.|++++
T Consensus 152 L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~ 231 (680)
T 1ziw_A 152 LSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSN 231 (680)
T ss_dssp CCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTT
T ss_pred CCCCCCCCCCHHHHHCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEECCC
T ss_conf 45884365297886244666321798889825655815553223445543056646805677787775315100887457
Q ss_pred CCCCCCCCCCCCCCCC--CCEEECCCCCCCCCHHHHHHCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 9873225887678877--65898468879998468740374565766028534588522433102366775065653568
Q 002556 376 NPLTMKLSHDWVPPFQ--LKWLSLASCKMGPNFPKWLRTQSQLILLDISNTGISGTVPDWFWDLSVELFFLNLSNNHIKG 453 (908)
Q Consensus 376 n~l~~~~~~~~~~~~~--L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~ 453 (908)
|.+.+..+..+..... |+.|++++|.+.+..+.++..+++|+.|++++|.+.+..+..+... ++|+.|++++|...+
T Consensus 232 n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~~~~~~ 310 (680)
T 1ziw_A 232 SQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGL-FNVRYLNLKRSFTKQ 310 (680)
T ss_dssp SCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTC-TTCCEEECTTCBCCC
T ss_pred CCCCCCCHHHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHCCC-CCCCEEECCCHHHHC
T ss_conf 7436468667514676778887787887675680211674105685577885676586562678-885577363313213
Q ss_pred CCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCC--CCCCCCC
Q ss_conf 78974456888728993078455889999999746546788587872100112345540897557733586--7800006
Q 002556 454 KLPDLSFLRSDDIVVDISSNHFTGQIPPLPSNSTFLNLSKNKFSGSITFLCSIIENTWNIFDLSSNLLSGE--LPDCWLN 531 (908)
Q Consensus 454 ~~p~~~~~~~~~~~l~ls~n~~~~~~p~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~--~p~~l~~ 531 (908)
.++..... .+.......+++++.+++++|++.+..+...... +.|+.|++++|.+... ....+..
T Consensus 311 ~~~~~~lp------------~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~Ls~n~~~~~~l~~~~f~~ 377 (680)
T 1ziw_A 311 SISLASLP------------KIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGL-INLKYLSLSNSFTSLRTLTNETFVS 377 (680)
T ss_dssp ------CC------------EECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTC-TTCCEEECTTCBSCCCEECTTTTGG
T ss_pred CCCCCCCC------------CCCHHHCCCCCCCCEEECCCCCCCCCCHHHHCCC-CCCCEEECCCCCHHHHHCCHHHHCC
T ss_conf 33335545------------4386562467778888798982687885574065-6872898879801443235322024
Q ss_pred --CCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC-CCCCCCCCCCEEECCCCCCCCCCCHHHHHCCCCC
Q ss_conf --9999879878984732489875899974699822860232389-4743999995998548703445762355205556
Q 002556 532 --FNSLFILNLANNSFSGKIPDSMGFLHNIRTLSLNNNRLTRELP-SSLKNCSQLRVLDLRNNALFGEIPIWIGGNLQNL 608 (908)
Q Consensus 532 --l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L 608 (908)
.++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+.+| ..+..+++|+.|++++|++.+..+..+. .+++|
T Consensus 378 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~~~~L 456 (680)
T 1ziw_A 378 LAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFA-LVPSL 456 (680)
T ss_dssp GTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTT-TCTTC
T ss_pred CCCCCCCEEECCCCCCCEECHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEECHHHHH-CCCCC
T ss_conf 55686766889999777677544207788888867787575435755325754612784489975422764550-07543
Q ss_pred CEEECCCCCCC--CCCCHHHHCCCCCCEEECCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCC
Q ss_conf 35404777112--2264112058887789843897876841422023113123689862343441003687532111123
Q 002556 609 IVLSLKSNNFH--GNIPFQLCYLAFIQVLDLSLNNISGKIPKCFSNFSTMIQERSSDPIIGMANRIWVLPGYVYQYRYLD 686 (908)
Q Consensus 609 ~~L~L~~N~l~--~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 686 (908)
+.|++++|.+. +.+|..+..+++|+.|++++|++++..|..|.++
T Consensus 457 ~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l--------------------------------- 503 (680)
T 1ziw_A 457 QRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGL--------------------------------- 503 (680)
T ss_dssp CEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTC---------------------------------
T ss_pred CCCHHCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHCCC---------------------------------
T ss_conf 10110146442256677645557878999899998776794463455---------------------------------
Q ss_pred EEEEEEECCCCCCCCCCCCCCEEECCCCCCCCCCH--------HHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 05786415521113445630089766874633350--------4232024576586457725466881658999999993
Q 002556 687 NILLTWKGSEHEYKSTLGFVKCLDLSSNKLCGPIL--------EEIMDLDGLIALNLSRNNLTGPISPKIGQLKSLDFLD 758 (908)
Q Consensus 687 ~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip--------~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ 758 (908)
+.|+.|++++|++++..+ ..++.+++|+.|+|++|.++...+..|.++++|+.|+
T Consensus 504 -----------------~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~ 566 (680)
T 1ziw_A 504 -----------------EKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIID 566 (680)
T ss_dssp -----------------TTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred -----------------CCCCEEECCCCCCCCCCHHHCCCCCCHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCEEE
T ss_conf -----------------346888588997300000004677414233799888888999978877977734666752238
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCC
Q ss_conf 98882663387241044798957175794522589985--356555342467888968
Q 002556 759 LSRNHFSGSIPSSLVKLCGLGVLDLSYNNLSGKIPLGT--QLQSFNASVYAGNLELCG 814 (908)
Q Consensus 759 Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~--~~~~~~~~~~~~n~~lcg 814 (908)
+++|++++..+..+..+++|+.|++++|++++..|... .+..+......+|+..|+
T Consensus 567 Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~ 624 (680)
T 1ziw_A 567 LGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCT 624 (680)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBC
T ss_pred CCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCCEEECCCCCCCCC
T ss_conf 9999777679768378988888989999687059668301146657798318970257
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=1.00 E-value=1 Score=460.20 Aligned_cols=531 Identities=21% Similarity=0.153 Sum_probs=377.8
Q ss_pred CCCCEEECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHCCC
Q ss_conf 88767865887589988446861379998899826899999999700013556731199867999999993156641248
Q 002556 137 SSLRHLDLSCVNLTKSSDWFQVVANLHYLKSLVLRSCALPPINPSFIWHFNLSTSIETLDLFDNNLPSSSVYPWFLNLSR 216 (908)
Q Consensus 137 ~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~~L~~LdLs~n~l~~~~~~~~~~~l~~ 216 (908)
+.+++|++++|.+++. .+..+.++++|++|++++|.+.+..| ..+.++ ++|++|++++|.+.+ ..|..+.++.
T Consensus 33 ~~l~~L~Ls~n~i~~~--~~~~~~~l~~L~~L~Ls~n~i~~~~~--~~~~~l-~~L~~L~Ls~n~l~~-~~~~~~~~l~- 105 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTI--QNTTFSRLINLTFLDLTRCQIYWIHE--DTFQSQ-HRLDTLVLTANPLIF-MAETALSGPK- 105 (606)
T ss_dssp TTCCEEECTTCCCSEE--CTTTSTTCTTCSEEECTTCCCCEECT--TTTTTC-TTCCEEECTTCCCSE-ECTTTTSSCT-
T ss_pred CCCCEEECCCCCCCCC--CHHHHCCCCCCEEEECCCCCCCEECH--HHCCCC-CCCCEEECCCCCCCC-CCHHHHCCCC-
T ss_conf 8675898158734717--96672567665289788983552485--113684-336764488985654-5865523442-
Q ss_pred CCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHCCCCCCCCCC
Q ss_conf 86689822664789860765229999699855874788840001399999899856877866303678520688777985
Q 002556 217 NILHLNLASNSLQGPIPEAFQHMVSLRFLALSSNELEGGIPKFFGNMCSLNELYLLNNKLSGQLSEFIQNLSSGCTVNSL 296 (908)
Q Consensus 217 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~~~~L 296 (908)
+|++|++++|.+.+..+..++++++|++|++++|.+++.....+..+++|++|++++|.+++..+..+..+. +|
T Consensus 106 ~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~------~L 179 (606)
T 3t6q_A 106 ALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQ------QA 179 (606)
T ss_dssp TCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTT------TC
T ss_pred CCCEEECCCCCCCCCCCCHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHC------CC
T ss_conf 153765212676657810122378223898879834114765456876568777656844554965633221------56
Q ss_pred C--EEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC----CCCHHHHCCCC--CC
Q ss_conf 7--8984589674679998898887599845865897341000047999889777876667----66734321999--99
Q 002556 297 E--GLCLYDNDITGPIPDLGGFSSLKELYLGENSLNGTINKSLNHLFKLETLSLDGNSFTG----VISETFFSNMS--NL 368 (908)
Q Consensus 297 ~--~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~----~~~~~~l~~l~--~L 368 (908)
+ .+++++|.+.+..+.......|+.|++++|. ..+..+..+.++....+....+.+ .++...+..+. .|
T Consensus 180 ~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~---~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L 256 (606)
T 3t6q_A 180 TNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQ---NLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSV 256 (606)
T ss_dssp CSEEEECTTCCCCEECTTTTTTCEEEEEECTTCS---CHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEE
T ss_pred CEEEEECCCCCCCCCCHHHHHHCCCCCCCCCCCH---HHHHHHHHCCCCCHHHEECHHHCCCCCCCCCHHHHCHHHCCCE
T ss_conf 4038966798147548667300100135567726---6777765133564422002011026412268667430320750
Q ss_pred CEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 98978789873225887678877658984688799984687403745657660285345885224331023667750656
Q 002556 369 QMLYLANNPLTMKLSHDWVPPFQLKWLSLASCKMGPNFPKWLRTQSQLILLDISNTGISGTVPDWFWDLSVELFFLNLSN 448 (908)
Q Consensus 369 ~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~ 448 (908)
+.+++++|.+....+..+...++|+.|++++|.+. .+|..+..+++|++|++++|.+.+..+..
T Consensus 257 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~--------------- 320 (606)
T 3t6q_A 257 ESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQIS--------------- 320 (606)
T ss_dssp EEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGC---------------
T ss_pred EEEEEECCCCCCCCHHHHCCCCCCCEEECCCCCCC-CCCHHHCCCCCCCEEECCCCCCCCCCHHH---------------
T ss_conf 59994457658557777445667888956288267-77821416546888977168768676023---------------
Q ss_pred CCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCC-C
Q ss_conf 535687897445688872899307845588999999974654678858787210011234554089755773358678-0
Q 002556 449 NHIKGKLPDLSFLRSDDIVVDISSNHFTGQIPPLPSNSTFLNLSKNKFSGSITFLCSIIENTWNIFDLSSNLLSGELP-D 527 (908)
Q Consensus 449 n~l~~~~p~~~~~~~~~~~l~ls~n~~~~~~p~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p-~ 527 (908)
+... +.|+.|++++|.+.+.++ .
T Consensus 321 ------------------------------------------------------~~~l--~~L~~L~l~~n~~~~~~~~~ 344 (606)
T 3t6q_A 321 ------------------------------------------------------ASNF--PSLTHLSIKGNTKRLELGTG 344 (606)
T ss_dssp ------------------------------------------------------GGGC--TTCSEEECCSCSSCCBCCSS
T ss_pred ------------------------------------------------------HHCC--CCCCEEECCCCCCCCCCCHH
T ss_conf ------------------------------------------------------3015--76898889899744434624
Q ss_pred CCCCCCCCCEEECCCCCCCCCC--CCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHCC
Q ss_conf 0006999987987898473248--98758999746998228602323894743999995998548703445762355205
Q 002556 528 CWLNFNSLFILNLANNSFSGKI--PDSMGFLHNIRTLSLNNNRLTRELPSSLKNCSQLRVLDLRNNALFGEIPIWIGGNL 605 (908)
Q Consensus 528 ~l~~l~~L~~L~Ls~N~l~~~~--p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l 605 (908)
.+..+++|++|++++|.+.+.. +..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|++.+..+......+
T Consensus 345 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l 424 (606)
T 3t6q_A 345 CLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNL 424 (606)
T ss_dssp TTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTC
T ss_pred HHHCCCCCCEEECCCCCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCCHHHHCC
T ss_conf 55066758988788996664567522105678889898989967757888734774577687888867775652124176
Q ss_pred CCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCC
Q ss_conf 55635404777112226411205888778984389787684142202311312368986234344100368753211112
Q 002556 606 QNLIVLSLKSNNFHGNIPFQLCYLAFIQVLDLSLNNISGKIPKCFSNFSTMIQERSSDPIIGMANRIWVLPGYVYQYRYL 685 (908)
Q Consensus 606 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 685 (908)
++|+.|++++|.+.+..|..+..+++|+.|++++|++++..+..
T Consensus 425 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~------------------------------------ 468 (606)
T 3t6q_A 425 HLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQK------------------------------------ 468 (606)
T ss_dssp TTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECS------------------------------------
T ss_pred CCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCC------------------------------------
T ss_conf 55888989898557768778737887888989899888543454------------------------------------
Q ss_pred CEEEEEEECCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCC
Q ss_conf 30578641552111344563008976687463335042320245765864577254668816589999999939888266
Q 002556 686 DNILLTWKGSEHEYKSTLGFVKCLDLSSNKLCGPILEEIMDLDGLIALNLSRNNLTGPISPKIGQLKSLDFLDLSRNHFS 765 (908)
Q Consensus 686 ~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~ 765 (908)
...+..++.|+.|++++|++++.+|..++.+++|+.|++++|++++.+|..+.+++.| .|++++|.++
T Consensus 469 -----------~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~ 536 (606)
T 3t6q_A 469 -----------TNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHIS 536 (606)
T ss_dssp -----------SCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCC
T ss_pred -----------CHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCC-EEECCCCCCC
T ss_conf -----------3124048876688799996670686463265678889898980686896684756651-8987689414
Q ss_pred CCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 33872410447989571757945225899853565553
Q 002556 766 GSIPSSLVKLCGLGVLDLSYNNLSGKIPLGTQLQSFNA 803 (908)
Q Consensus 766 ~~ip~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~ 803 (908)
+.+|..+..+++|+.+++++|++.|.|+..++..|+..
T Consensus 537 ~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~w~~~ 574 (606)
T 3t6q_A 537 IILPSLLPILSQQRTINLRQNPLDCTCSNIYFLEWYKE 574 (606)
T ss_dssp CCCGGGHHHHHTSSEEECTTCCEECSGGGHHHHHHHHH
T ss_pred CCCHHHCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHH
T ss_conf 26876625677878896779986166775789999973
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=1.00 E-value=1 Score=451.43 Aligned_cols=552 Identities=20% Similarity=0.156 Sum_probs=385.4
Q ss_pred CCCCEEECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHHCCC
Q ss_conf 88767865887589988446861379998899826899999999700013556731199867999999993156641248
Q 002556 137 SSLRHLDLSCVNLTKSSDWFQVVANLHYLKSLVLRSCALPPINPSFIWHFNLSTSIETLDLFDNNLPSSSVYPWFLNLSR 216 (908)
Q Consensus 137 ~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~~L~~LdLs~n~l~~~~~~~~~~~l~~ 216 (908)
+++++|++++|.+.+.. +..+.++++|++|++++|.+++..| ..+.++ ++|++|++++|.+.+ ..|..+.++.
T Consensus 32 ~~l~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~Ls~n~l~~i~~--~~~~~l-~~L~~L~Ls~n~l~~-~~p~~~~~l~- 104 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILK--SYSFSNFSELQWLDLSRCEIETIED--KAWHGL-HHLSNLILTGNPIQS-FSPGSFSGLT- 104 (606)
T ss_dssp TTCCEEECTTSCCCEEC--TTTTTTCTTCCEEECTTCCCCEECT--TTTTTC-TTCCEEECTTCCCCC-CCTTSSTTCT-
T ss_pred CCCCEEECCCCCCCEEC--HHHCCCCCCCCEEECCCCCCCCCCH--HHHHCH-HHCCEEECCCCCCCC-CCHHHCCCCC-
T ss_conf 87678878889757737--5455577667488688773664397--773060-106886787985630-4852207865-
Q ss_pred CCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCC-CCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHCCCCCCCCC
Q ss_conf 86689822664789860765229999699855874788-84000139999989985687786630367852068877798
Q 002556 217 NILHLNLASNSLQGPIPEAFQHMVSLRFLALSSNELEG-GIPKFFGNMCSLNELYLLNNKLSGQLSEFIQNLSSGCTVNS 295 (908)
Q Consensus 217 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~~~~~ 295 (908)
+|++|++++|.+.+..+..++++++|++|++++|.+++ .+|..++++++|++|++++|.+++..+..+..+.... ..
T Consensus 105 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~--~~ 182 (606)
T 3vq2_A 105 SLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENP--QV 182 (606)
T ss_dssp TCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCT--TC
T ss_pred CCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCEECHHHHHHCCCCCEEECCCCCCEECCHHHHHHHHCCC--CC
T ss_conf 3788870377555445113489887798968788523253068673267777887668853105733412120342--00
Q ss_pred CCEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCC-CCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCEEECC
Q ss_conf 57898458967467999889888759984586589-73410000479998897778766676673432199999989787
Q 002556 296 LEGLCLYDNDITGPIPDLGGFSSLKELYLGENSLN-GTINKSLNHLFKLETLSLDGNSFTGVISETFFSNMSNLQMLYLA 374 (908)
Q Consensus 296 L~~L~L~~n~l~~~~~~l~~l~~L~~L~Ls~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~ 374 (908)
+..+++++|.+.+..+......+|+.|++++|.++ +..+..+.+++.++.+++..+.+.+... +..
T Consensus 183 l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~---------l~~---- 249 (606)
T 3vq2_A 183 NLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERN---------LEI---- 249 (606)
T ss_dssp CCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCC---------CSC----
T ss_pred CCEEECCCCCCCEECCCCCCCCEEEEEECCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCC---------CCC----
T ss_conf 2430046897532571105676043352467856166778886026656523141111036774---------102----
Q ss_pred CCCCCCCCCCCCCCCCCCCEEEC-CCCCCCCCHHHHHHCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 89873225887678877658984-68879998468740374565766028534588522433102366775065653568
Q 002556 375 NNPLTMKLSHDWVPPFQLKWLSL-ASCKMGPNFPKWLRTQSQLILLDISNTGISGTVPDWFWDLSVELFFLNLSNNHIKG 453 (908)
Q Consensus 375 ~n~l~~~~~~~~~~~~~L~~L~L-~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~ 453 (908)
+.......+... .++.+++ ..+.+.+..|. +..+++|+.|++++|.+. .+| .+.. .++|+
T Consensus 250 ---~~~~~~~~l~~l-~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~-~l~-~l~~-~~~L~----------- 310 (606)
T 3vq2_A 250 ---FEPSIMEGLCDV-TIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIK-YLE-DVPK-HFKWQ----------- 310 (606)
T ss_dssp ---CCGGGGTTGGGS-EEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCC-CCC-CCCT-TCCCS-----------
T ss_pred ---CCHHHHHHHHHC-CHHHEECCCCCCCCCCCCC-CCCCCCCCEEEECCCCCH-HHH-HCCC-CCCCC-----------
T ss_conf ---681776666543-4745012366555543222-354887898771476604-435-4334-01177-----------
Q ss_pred CCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCC
Q ss_conf 78974456888728993078455889999999746546788587872100112345540897557733586780000699
Q 002556 454 KLPDLSFLRSDDIVVDISSNHFTGQIPPLPSNSTFLNLSKNKFSGSITFLCSIIENTWNIFDLSSNLLSGELPDCWLNFN 533 (908)
Q Consensus 454 ~~p~~~~~~~~~~~l~ls~n~~~~~~p~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~ 533 (908)
.+++++|.+ +.+| .+ .. +.|+.|++++|...+.. .+..++
T Consensus 311 -------------~L~l~~n~l-~~lp---------------------~~-~l--~~L~~L~l~~n~~~~~~--~~~~l~ 350 (606)
T 3vq2_A 311 -------------SLSIIRCQL-KQFP---------------------TL-DL--PFLKSLTLTMNKGSISF--KKVALP 350 (606)
T ss_dssp -------------EEEEESCCC-SSCC---------------------CC-CC--SSCCEEEEESCSSCEEC--CCCCCT
T ss_pred -------------EEECCCCCC-CCCC---------------------CC-CC--CCCCEEECCCCCCCCCH--HHCCCC
T ss_conf -------------897646667-6546---------------------67-88--75564454478685310--002489
Q ss_pred CCCEEECCCCCCCCC--CCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC-HHHHHCCCCCCE
Q ss_conf 998798789847324--89875899974699822860232389474399999599854870344576-235520555635
Q 002556 534 SLFILNLANNSFSGK--IPDSMGFLHNIRTLSLNNNRLTRELPSSLKNCSQLRVLDLRNNALFGEIP-IWIGGNLQNLIV 610 (908)
Q Consensus 534 ~L~~L~Ls~N~l~~~--~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip-~~~~~~l~~L~~ 610 (908)
+|++|++++|.+++. .+..+..+++|+.|++++|.+++ +|..+..+++|+.|++++|++.+..| ..+. .+++|++
T Consensus 351 ~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-~l~~L~~ 428 (606)
T 3vq2_A 351 SLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFL-SLEKLLY 428 (606)
T ss_dssp TCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTT-TCTTCCE
T ss_pred CCCEEECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCC-CHHHCCCCCCCCEEECCCCCCCCCCCHHHHH-CCCCCCE
T ss_conf 8887977587368775201221467755486788995300-0554068888896589887058753764564-6213788
Q ss_pred EECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCC-CHHHHCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCEEE
Q ss_conf 40477711222641120588877898438978768-41422023113123689862343441003687532111123057
Q 002556 611 LSLKSNNFHGNIPFQLCYLAFIQVLDLSLNNISGK-IPKCFSNFSTMIQERSSDPIIGMANRIWVLPGYVYQYRYLDNIL 689 (908)
Q Consensus 611 L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~-ip~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 689 (908)
|++++|++.+..|..+..+++|+.|++++|.+++. +|..+..+
T Consensus 429 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l------------------------------------ 472 (606)
T 3vq2_A 429 LDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANT------------------------------------ 472 (606)
T ss_dssp EECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTC------------------------------------
T ss_pred EECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHHCCC------------------------------------
T ss_conf 98968978743355534778789898989837985467760457------------------------------------
Q ss_pred EEEECCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC
Q ss_conf 86415521113445630089766874633350423202457658645772546688165899999999398882663387
Q 002556 690 LTWKGSEHEYKSTLGFVKCLDLSSNKLCGPILEEIMDLDGLIALNLSRNNLTGPISPKIGQLKSLDFLDLSRNHFSGSIP 769 (908)
Q Consensus 690 ~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip 769 (908)
+.|+.|++++|++++.+|..++.+++|+.|++++|++++.+|..++++++|+.|++++|+++ .+|
T Consensus 473 --------------~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p 537 (606)
T 3vq2_A 473 --------------TNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSK 537 (606)
T ss_dssp --------------TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEE
T ss_pred --------------CCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCC-CCC
T ss_conf --------------88998989888577648656154646898989899578748777068876898889898376-668
Q ss_pred CCCCCCC-CCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 2410447-989571757945225899853565553424678889688999999999999
Q 002556 770 SSLVKLC-GLGVLDLSYNNLSGKIPLGTQLQSFNASVYAGNLELCGPPLPNQCPNEEST 827 (908)
Q Consensus 770 ~~l~~l~-~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~n~~lcg~~~~~~C~~~~~~ 827 (908)
..+..++ +|+++++++|++.|.|+..+...|+.. +......+....|..|...
T Consensus 538 ~~~~~l~~~L~~l~l~~N~~~c~c~~~~~~~~l~~-----~~~~~~~~~~~~C~~p~~~ 591 (606)
T 3vq2_A 538 GILQHFPKSLAFFNLTNNSVACICEHQKFLQWVKE-----QKQFLVNVEQMTCATPVEM 591 (606)
T ss_dssp SCGGGSCTTCCEEECCSCCCCCSSTTHHHHTTTTT-----SSSSBSSGGGCCCC-----
T ss_pred HHHHHHCCCCCEEECCCCCCCCCCCCHHHHHHHHC-----CCCCCCCCCCCEECCCHHH
T ss_conf 76752102174887628986647764899999872-----7640047766165977576
No 8
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=440.49 Aligned_cols=511 Identities=22% Similarity=0.227 Sum_probs=301.9
Q ss_pred CCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC-HHHHHHCCCCCCEEECCCCCCCCCCCHHHHCCC
Q ss_conf 9998899826899999999700013556731199867999999993-156641248866898226647898607652299
Q 002556 162 LHYLKSLVLRSCALPPINPSFIWHFNLSTSIETLDLFDNNLPSSSV-YPWFLNLSRNILHLNLASNSLQGPIPEAFQHMV 240 (908)
Q Consensus 162 l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~~L~~LdLs~n~l~~~~~-~~~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~ 240 (908)
.++|++|+|++|.+++..+ ..+.++ ++|++||+++|...+ .+ |..+.++. +|++|+|++|.+.+..|..|..++
T Consensus 23 p~~l~~LdLs~N~i~~i~~--~~~~~l-~~L~~LdLs~n~~~~-~i~~~~f~~L~-~L~~L~Ls~N~l~~~~p~~~~~l~ 97 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRTVTA--SSFPFL-EQLQLLELGSQYTPL-TIDKEAFRNLP-NLRILDLGSSKIYFLHPDAFQGLF 97 (844)
T ss_dssp CTTCCEEEEESCCCCEECS--SSCSSC-CSCSEEEECTTCCCC-EECTTTTSSCT-TCCEEECTTCCCCEECTTSSCSCS
T ss_pred CCCCCEEECCCCCCCCCCH--HHCCCC-CCCEEEECCCCCCCC-CCCHHHHCCCC-CCCEEECCCCCCCCCCHHHCCCCC
T ss_conf 9986888887786783296--677662-137088678997744-41977853787-788887989958531976715786
Q ss_pred CCCEEECCCCCCCCCCCCC--CCCCCCCCEEECCCCCCCCCHH-HHHHHCCCCCCCCCCCEEECCCCCCCCCCCCCCCCC
Q ss_conf 9969985587478884000--1399999899856877866303-678520688777985789845896746799988988
Q 002556 241 SLRFLALSSNELEGGIPKF--FGNMCSLNELYLLNNKLSGQLS-EFIQNLSSGCTVNSLEGLCLYDNDITGPIPDLGGFS 317 (908)
Q Consensus 241 ~L~~L~Ls~n~l~~~~p~~--l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~~~~~~~L~~L~L~~n~l~~~~~~l~~l~ 317 (908)
+|++|++++|.+++..|.. +.++++|++|++++|.+.+..+ .. +.+++
T Consensus 98 ~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~-----------------------------~~~L~ 148 (844)
T 3j0a_A 98 HLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPS-----------------------------FGKLN 148 (844)
T ss_dssp SCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGG-----------------------------GGTCS
T ss_pred CCCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHH-----------------------------HHHCC
T ss_conf 6587017678897340467645566799988898786423256655-----------------------------76388
Q ss_pred CCCEEECCCCCCCCCCCCCCCCC--CCCCEEECCCCCCCCCCCHHHHCCCCC------CCEEECCCCCCCCCCCCCCCCC
Q ss_conf 87599845865897341000047--999889777876667667343219999------9989787898732258876788
Q 002556 318 SLKELYLGENSLNGTINKSLNHL--FKLETLSLDGNSFTGVISETFFSNMSN------LQMLYLANNPLTMKLSHDWVPP 389 (908)
Q Consensus 318 ~L~~L~Ls~n~l~~~~~~~l~~l--~~L~~L~L~~n~l~~~~~~~~l~~l~~------L~~L~L~~n~l~~~~~~~~~~~ 389 (908)
+|++|++++|.+++..+..+..+ ++|+.|+++.|.+.+..+. .+..+++ |+.|++++|.+....+..+...
T Consensus 149 ~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~-~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~ 227 (844)
T 3j0a_A 149 SLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSV-DWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNA 227 (844)
T ss_dssp SCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCC-CCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGT
T ss_pred CCCEEECCCCCCCEECHHHCCCCCCCCCCEEECCCCCCCCCCCC-CHHHCCCCCCCCCEEEEECCCCCCCHHHHHHHHHH
T ss_conf 98989898984776678875355677503578978866655455-33223772235740079657886865677888764
Q ss_pred CCCCEEECCCCCCCCCHHHHHHCCCCCCEEEECCCCCC---------CCCCHHHHHH-HHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 77658984688799984687403745657660285345---------8852243310-2366775065653568789744
Q 002556 390 FQLKWLSLASCKMGPNFPKWLRTQSQLILLDISNTGIS---------GTVPDWFWDL-SVELFFLNLSNNHIKGKLPDLS 459 (908)
Q Consensus 390 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~---------~~~~~~~~~~-~~~L~~L~L~~n~l~~~~p~~~ 459 (908)
....++..+.++.+.+. +.....+... .++++
T Consensus 228 ---------------------l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~----------------- 269 (844)
T 3j0a_A 228 ---------------------ISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVR----------------- 269 (844)
T ss_dssp ---------------------SCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCC-----------------
T ss_pred ---------------------CCCCCCCCEECCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCC-----------------
T ss_conf ---------------------274410011212122346644456688985565255547861-----------------
Q ss_pred CCCCCCCEEEEECCCCCCCCCCC---CCCCCEEECCCCCCCCCCCC-CCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 56888728993078455889999---99974654678858787210-011234554089755773358678000069999
Q 002556 460 FLRSDDIVVDISSNHFTGQIPPL---PSNSTFLNLSKNKFSGSITF-LCSIIENTWNIFDLSSNLLSGELPDCWLNFNSL 535 (908)
Q Consensus 460 ~~~~~~~~l~ls~n~~~~~~p~~---~~~L~~L~Ls~n~l~~~~~~-~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L 535 (908)
.+++++|.+.+..+.. .++++.|++++|++.+..+. +... +.|+.|++++|.+++..+..+..+++|
T Consensus 270 -------~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l--~~L~~L~Ls~N~l~~~~~~~~~~l~~L 340 (844)
T 3j0a_A 270 -------HLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGL--DNLQVLNLSYNLLGELYSSNFYGLPKV 340 (844)
T ss_dssp -------EEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTC--SSCCEEEEESCCCSCCCSCSCSSCTTC
T ss_pred -------EEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHCCC--CCCCEEECCCCCCCCCCHHHHCCCCCC
T ss_conf -------89897994551586345258999999897981898796883688--899989898997885187884689999
Q ss_pred CEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCC
Q ss_conf 87987898473248987589997469982286023238947439999959985487034457623552055563540477
Q 002556 536 FILNLANNSFSGKIPDSMGFLHNIRTLSLNNNRLTRELPSSLKNCSQLRVLDLRNNALFGEIPIWIGGNLQNLIVLSLKS 615 (908)
Q Consensus 536 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~ 615 (908)
+.|++++|.+.+..+..|..+++|+.|++++|.+++ ++ .+++|+.|++++|++. .+|.. ..+++.|++++
T Consensus 341 ~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-i~----~~~~L~~L~l~~N~l~-~l~~~----~~~l~~L~ls~ 410 (844)
T 3j0a_A 341 AYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT-IH----FIPSIPDIFLSGNKLV-TLPKI----NLTANLIHLSE 410 (844)
T ss_dssp CEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC-CS----SCCSCSEEEEESCCCC-CCCCC----CTTCCEEECCS
T ss_pred CEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCC-CC----CCCCCCHHCCCCCCCC-CCCCC----CCCCCEEECCC
T ss_conf 989898998776286661378889998898997786-16----8898232005899723-14554----55431221456
Q ss_pred CCCCCCC-CHHHHCCCCCCEEECCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCEEEEEEEC
Q ss_conf 7112226-411205888778984389787684142202311312368986234344100368753211112305786415
Q 002556 616 NNFHGNI-PFQLCYLAFIQVLDLSLNNISGKIPKCFSNFSTMIQERSSDPIIGMANRIWVLPGYVYQYRYLDNILLTWKG 694 (908)
Q Consensus 616 N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 694 (908)
|++.+.. +..+..+++|+.|++++|++++..+...
T Consensus 411 N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-------------------------------------------- 446 (844)
T 3j0a_A 411 NRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQT-------------------------------------------- 446 (844)
T ss_dssp CCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSS--------------------------------------------
T ss_pred CCCCCCCHHHHHHCCCCCCEEECCCCCCCCCCCCCC--------------------------------------------
T ss_conf 753457556665127766666677871255554333--------------------------------------------
Q ss_pred CCCCCCCCCCCCCEEECCCCCCC-----CCCHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC
Q ss_conf 52111344563008976687463-----3350423202457658645772546688165899999999398882663387
Q 002556 695 SEHEYKSTLGFVKCLDLSSNKLC-----GPILEEIMDLDGLIALNLSRNNLTGPISPKIGQLKSLDFLDLSRNHFSGSIP 769 (908)
Q Consensus 695 ~~~~~~~~l~~L~~L~Ls~N~l~-----~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip 769 (908)
...++.|+.|++++|.++ +..+..|..+++|+.|+|++|.+++.+|..+.++++|+.|+|++|++++..|
T Consensus 447 -----~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~ 521 (844)
T 3j0a_A 447 -----PSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSH 521 (844)
T ss_dssp -----SCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCC
T ss_pred -----CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCHHHHHEEECCCCCCCCCCH
T ss_conf -----566873100247777364410135535554475536577788985655395570450122156999997874571
Q ss_pred CCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 241044798957175794522589985356555342467888968899
Q 002556 770 SSLVKLCGLGVLDLSYNNLSGKIPLGTQLQSFNASVYAGNLELCGPPL 817 (908)
Q Consensus 770 ~~l~~l~~L~~L~ls~N~l~g~ip~~~~~~~~~~~~~~~n~~lcg~~~ 817 (908)
..+. ++|+.|++++|++++..|.. +..+....+.+|+..|+.+.
T Consensus 522 ~~~~--~~L~~L~Ls~N~l~~~~~~~--~~~L~~l~l~~Np~~C~c~~ 565 (844)
T 3j0a_A 522 NDLP--ANLEILDISRNQLLAPNPDV--FVSLSVLDITHNKFICECEL 565 (844)
T ss_dssp CCCC--SCCCEEEEEEECCCCCCSCC--CSSCCEEEEEEECCCCSSSC
T ss_pred HHHH--CCCCEEECCCCCCCCCCHHH--HCCCCEEEECCCCCCCCCCC
T ss_conf 0110--04558889888478889668--37768899319970253661
No 9
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=1.00 E-value=1 Score=439.25 Aligned_cols=509 Identities=17% Similarity=0.225 Sum_probs=264.1
Q ss_pred CCCHHHHHHHHHHHHCCCCCC--------CCCCCCCCCCCCCCCCCC---CCCCCCCCCCCEEEEEECCCCCCCCHHHHH
Q ss_conf 898887999999983274475--------787898888999999875---651028999976999504787554201123
Q 002556 61 RCVDEEREALLTFRQSLVDEY--------GILSSWGREDGKRDCCKW---RGVRCSNTTGHVKVLNLRTSDYEFARRKFL 129 (908)
Q Consensus 61 ~c~~~~~~aLl~~k~~~~~~~--------~~l~~W~~~~~~~~~C~w---~gv~C~~~~~~V~~l~L~~~~~~~~~~~~~ 129 (908)
.....|+.||.+++.++.++. ....+|+ .+.|||.| .||+|+. .|||++|+|+++++.|..|.
T Consensus 26 ~~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~---~~~~~c~w~~~~GV~C~~-~~~V~~L~L~~~~l~g~lp~-- 99 (636)
T 4eco_A 26 AEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWN---FNKELDMWGAQPGVSLNS-NGRVTGLSLEGFGASGRVPD-- 99 (636)
T ss_dssp CHHHHHHHHHHHHHHHTTGGGCCCCC------CCCC---CSSCGGGTTCCTTEEECT-TCCEEEEECTTSCCEEEECG--
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCCEEECC-CCCEEEEEECCCCCCCCCCH--
T ss_conf 667788999999999758997454776776578877---799800014779848767-89788998427665772885--
Q ss_pred HHHHCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHH
Q ss_conf 77621798876786588758998844686137999889982689999999970001355673119986799999999315
Q 002556 130 KEWLSHLSSLRHLDLSCVNLTKSSDWFQVVANLHYLKSLVLRSCALPPINPSFIWHFNLSTSIETLDLFDNNLPSSSVYP 209 (908)
Q Consensus 130 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~~L~~LdLs~n~l~~~~~~~ 209 (908)
.++++++|++|++++|.+...... ++.. ......| ... + ..|+ ++++++.+.+ ..+.
T Consensus 100 --~l~~L~~L~~L~Ls~N~~~~~~~~---~~~~-----------~~~~~~~--~~~--~-~~l~-l~l~~~~l~~-~~~~ 156 (636)
T 4eco_A 100 --AIGQLTELEVLALGSHGEKVNERL---FGPK-----------GISANMS--DEQ--K-QKMR-MHYQKTFVDY-DPRE 156 (636)
T ss_dssp --GGGGCTTCCEEESCCGGGGGTCCS---BSTT-----------SBCTTCC--HHH--H-HHHH-THHHHHHTCC-CGGG
T ss_pred --HHHCCCCCEEEECCCCCCCCCCCC---CCCC-----------CCCCCCH--HHH--H-HHHH-HHHHHHHHCC-CCHH
T ss_conf --785684511898768851237743---3453-----------2356733--888--8-8887-6577755411-7066
Q ss_pred HHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEEC--CCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC--------
Q ss_conf 66412488668982266478986076522999969985--58747888400013999998998568778663--------
Q 002556 210 WFLNLSRNILHLNLASNSLQGPIPEAFQHMVSLRFLAL--SSNELEGGIPKFFGNMCSLNELYLLNNKLSGQ-------- 279 (908)
Q Consensus 210 ~~~~l~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L--s~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-------- 279 (908)
.+..+...+..+++....+.. .....++.+.+ ..|.+++ +|..++++++|++|++++|.+++.
T Consensus 157 ~~~~~~~~l~~~~l~~~~~~~------~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~ 229 (636)
T 4eco_A 157 DFSDLIKDCINSDPQQKSIKK------SSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWEN 229 (636)
T ss_dssp GSCHHHHHHHHHCTTSCCCCC------CCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSC
T ss_pred HHHHHHHHHHHCCCCCCCCCC------CCCCCHHHHHHCCCCCCCCC-CCHHHHCCCCCCEEECCCCCCCCCCCCCCCCC
T ss_conf 677887777642755465410------13344213001013677750-78777256478789886882366423221222
Q ss_pred ---------HHHHHH--HCCCCCCCCCCCEEECCCCCCCCCCCC-CCCCCCCCEEECCCCC-CCC-CCCCCCCCC-----
Q ss_conf ---------036785--206887779857898458967467999-8898887599845865-897-341000047-----
Q 002556 280 ---------LSEFIQ--NLSSGCTVNSLEGLCLYDNDITGPIPD-LGGFSSLKELYLGENS-LNG-TINKSLNHL----- 340 (908)
Q Consensus 280 ---------~~~~l~--~l~~~~~~~~L~~L~L~~n~l~~~~~~-l~~l~~L~~L~Ls~n~-l~~-~~~~~l~~l----- 340 (908)
+|..+. +++ +|++|++++|.+.+.+|. +.++++|++|++++|. +++ .+|..++.+
T Consensus 230 ~~~~~~~~~ip~~l~~~~l~------~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~ 303 (636)
T 4eco_A 230 ENSEYAQQYKTEDLKWDNLK------DLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPV 303 (636)
T ss_dssp TTSHHHHHHTTSCCCGGGCT------TCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGG
T ss_pred CCCCHHCCCCCHHHHHCCCC------CCCEEEECCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCHHHHHHHHCCCC
T ss_conf 22100102486322004468------788898048857762838883499978897847988766533578875430465
Q ss_pred -CCCCEEECCCCCCCCCCCH-HHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCHHHHHHCCCCCCE
Q ss_conf -9998897778766676673-43219999998978789873225887678877658984688799984687403745657
Q 002556 341 -FKLETLSLDGNSFTGVISE-TFFSNMSNLQMLYLANNPLTMKLSHDWVPPFQLKWLSLASCKMGPNFPKWLRTQSQLIL 418 (908)
Q Consensus 341 -~~L~~L~L~~n~l~~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 418 (908)
++|+.|++++|.+. .+|. ..+..+++|+.|++++|.+.+.++ . +..+
T Consensus 304 l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~------------------------~~~l----- 352 (636)
T 4eco_A 304 GEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-A------------------------FGSE----- 352 (636)
T ss_dssp GGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-C------------------------CEEE-----
T ss_pred CCCCCEEECCCCCCC-CCCCHHHHCCCCCCCEEECCCCCCCCCHH-H------------------------HCCC-----
T ss_conf 788888989799377-66765554257888989690880705166-6------------------------4788-----
Q ss_pred EEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCEEECCCCCCCC
Q ss_conf 66028534588522433102366775065653568789744568887289930784558899999997465467885878
Q 002556 419 LDISNTGISGTVPDWFWDLSVELFFLNLSNNHIKGKLPDLSFLRSDDIVVDISSNHFTGQIPPLPSNSTFLNLSKNKFSG 498 (908)
Q Consensus 419 L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~~~~~~~l~ls~n~~~~~~p~~~~~L~~L~Ls~n~l~~ 498 (908)
T Consensus 353 -------------------------------------------------------------------------------- 352 (636)
T 4eco_A 353 -------------------------------------------------------------------------------- 352 (636)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCC-CCEEECCCCCCCCCCCCCCCCCC--CCCEEECCCCCCCCCCCC
Q ss_conf 721001123455408975577335867800006999-98798789847324898758999--746998228602323894
Q 002556 499 SITFLCSIIENTWNIFDLSSNLLSGELPDCWLNFNS-LFILNLANNSFSGKIPDSMGFLH--NIRTLSLNNNRLTRELPS 575 (908)
Q Consensus 499 ~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~-L~~L~Ls~N~l~~~~p~~~~~l~--~L~~L~Ls~N~l~~~~p~ 575 (908)
+.|+.|++++|.++ .+|..+..+++ |++|++++|.++ .+|..+...+ +|+.|++++|.+++..|.
T Consensus 353 ----------~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~ 420 (636)
T 4eco_A 353 ----------IKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGK 420 (636)
T ss_dssp ----------EEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTC
T ss_pred ----------CCCCEEECCCCCCC-CCCHHHHHHCCCCCEEECCCCCCC-CCCHHHHHCCCCCCCEEECCCCCCCCCCHH
T ss_conf ----------98898989899403-033756510236868985298275-446655333457668897748857886524
Q ss_pred CCC-------CCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHC--------CCCCCEEECCCC
Q ss_conf 743-------99999599854870344576235520555635404777112226411205--------888778984389
Q 002556 576 SLK-------NCSQLRVLDLRNNALFGEIPIWIGGNLQNLIVLSLKSNNFHGNIPFQLCY--------LAFIQVLDLSLN 640 (908)
Q Consensus 576 ~l~-------~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~l~~--------l~~L~~L~Ls~N 640 (908)
.+. .+++|+.|++++|++. .+|..++..+++|+.|++++|+++ .+|..... +++|+.|++++|
T Consensus 421 ~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N 498 (636)
T 4eco_A 421 NFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFN 498 (636)
T ss_dssp SSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSS
T ss_pred HHCCCCCCCCCCCCCCEEECCCCCCC-CCCHHHHCCCCCCCEEECCCCCCC-CCCHHHHCCCCCCCCCCCCCCEEECCCC
T ss_conf 42002201125898888977279668-678788715898898989799788-7397884044001221477338989699
Q ss_pred CCCCCCHHHHC--CCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCEEECCCCCCCC
Q ss_conf 78768414220--2311312368986234344100368753211112305786415521113445630089766874633
Q 002556 641 NISGKIPKCFS--NFSTMIQERSSDPIIGMANRIWVLPGYVYQYRYLDNILLTWKGSEHEYKSTLGFVKCLDLSSNKLCG 718 (908)
Q Consensus 641 ~l~g~ip~~l~--~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~ 718 (908)
+++ .+|..+. . ++.|+.|++++|++++
T Consensus 499 ~l~-~lp~~~~~~~--------------------------------------------------l~~L~~L~Ls~N~l~~ 527 (636)
T 4eco_A 499 KLT-KLSDDFRATT--------------------------------------------------LPYLVGIDLSYNSFSK 527 (636)
T ss_dssp CCC-BCCGGGSTTT--------------------------------------------------CTTCCEEECCSSCCSS
T ss_pred CCC-CCCHHHHHCC--------------------------------------------------CCCCCEEECCCCCCCC
T ss_conf 388-1685453445--------------------------------------------------8876989898998877
Q ss_pred CCHHHHHCCCCCCEEEC------CCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC
Q ss_conf 35042320245765864------57725466881658999999993988826633872410447989571757945225
Q 002556 719 PILEEIMDLDGLIALNL------SRNNLTGPISPKIGQLKSLDFLDLSRNHFSGSIPSSLVKLCGLGVLDLSYNNLSGK 791 (908)
Q Consensus 719 ~ip~~l~~l~~L~~L~L------s~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~ls~N~l~g~ 791 (908)
+|..+..+++|+.|++ ++|++.+.+|..++++++|+.|++++|++ +.+|..+. ++|+.|++++|++.+.
T Consensus 528 -ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~~ 602 (636)
T 4eco_A 528 -FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNISI 602 (636)
T ss_dssp -CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTCEE
T ss_pred -CCHHHHCCCCCCEEECCCCCCCCCCCCCCCCHHHHHCCCCCCEEECCCCCC-CCCCHHHH--CCCCEEECCCCCCCCC
T ss_conf -682353088878788988866566731212737785699878898989947-70597683--8678998769987633
No 10
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=1.00 E-value=1 Score=430.38 Aligned_cols=83 Identities=18% Similarity=0.224 Sum_probs=61.5
Q ss_pred CCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCC--CCCCC--CCC------------CCCCCCCCCCCEEEEEECCCCCC
Q ss_conf 788988879999999832744757878988889--99999--875------------65102899997699950478755
Q 002556 59 KIRCVDEEREALLTFRQSLVDEYGILSSWGRED--GKRDC--CKW------------RGVRCSNTTGHVKVLNLRTSDYE 122 (908)
Q Consensus 59 ~~~c~~~~~~aLl~~k~~~~~~~~~l~~W~~~~--~~~~~--C~w------------~gv~C~~~~~~V~~l~L~~~~~~ 122 (908)
.+.+..+|+.||++||+++.++ +|+... ...+| |.| .||+|+. .+||++|+|+++++.
T Consensus 263 ~~~~~~~d~~ALl~~k~~l~~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~~L~ 336 (876)
T 4ecn_A 263 ETAEYIKDYKALKAIWEALDGK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGFGAK 336 (876)
T ss_dssp CCCHHHHHHHHHHHHHHHTTGG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTTCCE
T ss_pred CCCCCHHHHHHHHHHHHHCCCC-----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECC-CCCEEEEECCCCCCC
T ss_conf 4546317899999999973799-----9886898653367764034666545335768428369-997989987247899
Q ss_pred CCHHHHHHHHHCCCCCCCEEEC-CCCCCCC
Q ss_conf 4201123776217988767865-8875899
Q 002556 123 FARRKFLKEWLSHLSSLRHLDL-SCVNLTK 151 (908)
Q Consensus 123 ~~~~~~~~~~l~~l~~L~~L~L-s~n~l~~ 151 (908)
|..|. .++++++|++|+| ++|.+.+
T Consensus 337 G~ip~----~l~~L~~L~~LdLss~N~lsG 362 (876)
T 4ecn_A 337 GRVPD----AIGQLTELKVLSFGTHSETVS 362 (876)
T ss_dssp EEECG----GGGGCTTCCEEESCCTTHHHH
T ss_pred CCCCH----HHHCCCCCEEEEECCCCCCCC
T ss_conf 94855----774155562843012563356
Done!