Your job contains 1 sequence.
>002557
MALVPSRQFCPATAIFDSFQSSFSKFHGTHFHFFRCGHSIPLKNRFFYQNFSSNSAHEKN
PPRKTCSFSTNNFFSQHDKDDNANLCSSSSWLVKWNKPNKYNRLKPPQASVNYRKNNVDL
SALGFARTDSDGNGVGGVDDGGSTMGKIVEKLKKFGYVGDGDGDGDGDNDERRGQGKERV
IEKGSIEDIFYVEEGLLPNARGGFSKESPLGLGEEVGSDGEVKFPWEKRKEEVAEGRWLV
KRRSSRTSLAELTLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRL
KIEGAPALNMKRMHEILERKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPA
SSVSQATDKQIHKQISMSVNLETASEEQETDFVREVKYEDEVEKLLDGLGPRYTDWPGCD
PLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHFALGRSRQLQG
LAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDFLVFYRGKNFL
SPDVTEALQERERLAKSLQDEEEQARLRASAFVLPSIETIEKSGTAGTLKETLDANSRWG
KRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAERKLLRAERALSKVEESLKPAERQAD
PESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQA
KKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPKNLLTKRKALARSIELQ
RQEALLKHVATLESNAGRLRSEIEQMNSVKGTGDEQLYDKLDSAYATEDDDSEDEGDEAY
LEMYAGGNDNEDEIDNSTHNLEMESDFPYHAQDQESETELMDSESEAYTVHSTYCASTDI
VEEDNNFY
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 002557
(908 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2094558 - symbol:CFM3A "CRM family member 3A" ... 2279 1.1e-242 3
TAIR|locus:2094997 - symbol:EMB1865 "embryo defective 186... 1320 9.4e-137 2
TAIR|locus:2096662 - symbol:CFM2 "CRM family member 2" sp... 1233 1.6e-125 1
TAIR|locus:2181372 - symbol:CRS1 "ortholog of maize chlor... 783 4.8e-95 2
TAIR|locus:2094438 - symbol:LOH1 "LAG One Homologue 1" sp... 279 1.9e-21 1
TAIR|locus:2123276 - symbol:AT4G13070 species:3702 "Arabi... 245 1.3e-18 1
TAIR|locus:2091458 - symbol:AT3G27550 species:3702 "Arabi... 238 3.0e-16 2
TAIR|locus:2056558 - symbol:AT2G28480 species:3702 "Arabi... 226 8.8e-16 1
TAIR|locus:2126694 - symbol:AT4G31010 species:3702 "Arabi... 150 2.9e-11 2
TAIR|locus:2160195 - symbol:AT5G54890 species:3702 "Arabi... 151 3.2e-09 2
TAIR|locus:2028100 - symbol:CAF2 species:3702 "Arabidopsi... 133 1.0e-08 2
TAIR|locus:2061604 - symbol:CAF1 species:3702 "Arabidopsi... 134 1.1e-08 2
>TAIR|locus:2094558 [details] [associations]
symbol:CFM3A "CRM family member 3A" species:3702
"Arabidopsis thaliana" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0000373 "Group II
intron splicing" evidence=IMP] [GO:0048316 "seed development"
evidence=IGI] InterPro:IPR001890 Pfam:PF01985 PROSITE:PS51295
SMART:SM01103 GO:GO:0009507 EMBL:CP002686 GO:GO:0003723
GO:GO:0048316 Gene3D:3.30.110.60 SUPFAM:SSF75471 GO:GO:0000373
IPI:IPI00537962 RefSeq:NP_188947.2 UniGene:At.6125 UniGene:At.71222
ProteinModelPortal:F4J2U9 SMR:F4J2U9 PRIDE:F4J2U9
EnsemblPlants:AT3G23070.1 GeneID:821881 KEGG:ath:AT3G23070
OMA:VEILRHE Uniprot:F4J2U9
Length = 881
Score = 2279 (807.3 bits), Expect = 1.1e-242, Sum P(3) = 1.1e-242
Identities = 476/804 (59%), Positives = 581/804 (72%)
Query: 64 KTCSFSTNNFFSQHDKDDNANLCSSSSWLVKWNKPNKYNRLKPPQASVNYRKNNVDLSAL 123
K +FS+ N + + C++ WL WN+ K N+ KPP+ VNYRK
Sbjct: 43 KGVTFSSRNDQIASRRFSFSRDCNNGVWLENWNRIQKRNQPKPPKVVVNYRKEG------ 96
Query: 124 GFARTXXXXXXXXXXXXXX-XTMGKIVEKLKKFGYVXXXXXXXXXXNDERRGQGKERVIE 182
F+ + TM KIVEKLKK+GY+ N E +ER IE
Sbjct: 97 RFSGSEIVSGDDNRSRDGDGSTMEKIVEKLKKYGYMEEVQ------NKEIE---QERRIE 147
Query: 183 KGSIEDIFYVEEGLLPNARGGFSKESPLGLGEEV-GSDGEVKFPWEK---RKEEVAEGRW 238
KGS+EDIFYVEEG LPN RGGF++ES LG GE V GS+G+V FPWEK ++++ E W
Sbjct: 148 KGSVEDIFYVEEGKLPNTRGGFTEESLLG-GENVIGSNGDVGFPWEKMSAKEKKELEAEW 206
Query: 239 LVKRRSSRTSLAELTLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIV 298
K+ + R SLAE+TLPESELRRLRNLTF+T SK RI+G G+TQ VD I EKWK++EIV
Sbjct: 207 TAKKEN-RYSLAEMTLPESELRRLRNLTFRTASKMRIRGGGVTQVAVDAIKEKWKSAEIV 265
Query: 299 RLKIEGAPALNMKRMHEILERKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNEL 358
RLKIEGA ALNM++MHEILE+KTGGLVIWRSGT++SLYRGVSYE+PS + NK+ +R E
Sbjct: 266 RLKIEGASALNMRKMHEILEKKTGGLVIWRSGTSISLYRGVSYELPSGKWNKQ--RREET 323
Query: 359 PASSV----SQAT---DKQIHKQISMSVNLETASEEQETDFVREVKYEDEVEKLLDGLGP 411
P +V + T DK K + ET S E++ V+YEDE+++LLD LGP
Sbjct: 324 PPEAVIENHDETTTMVDKSDEKVHLPQLEQETTSVEKKDQTSPVVEYEDELDELLDDLGP 383
Query: 412 RYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHFA 471
R+ DWPG +PLPVDAD+LPG +P Y+PPFRVLPYGVRS+L KEAT L+RLAR +PPHFA
Sbjct: 384 RFMDWPGDNPLPVDADLLPGAIPDYEPPFRVLPYGVRSSLGPKEATALRRLARSIPPHFA 443
Query: 472 LGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDFL 531
LGRSRQLQGLA AM++LWEKS +AKIA+KRGVQ TTSERM ED+KKLTGG +LSRNKDFL
Sbjct: 444 LGRSRQLQGLATAMVRLWEKSMLAKIAIKRGVQSTTSERMAEDLKKLTGGIMLSRNKDFL 503
Query: 532 VFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLR-ASAFVLPSIETIEKSGTAGTLK 590
VFYRGKNFLS +V +AL E+ER ++LQDEEEQARLR +SA ++PS E K +AGTL
Sbjct: 504 VFYRGKNFLSREVADALVEQERFVRTLQDEEEQARLRGSSALIVPSTEPANKLVSAGTLG 563
Query: 591 ETLDANSRWGKRLDDS-HKENLVREAEVRRHAYLVQXXXXXXXXXXXXXXXXXXXXSKVE 649
ETLDA +WGK LDD H + + +E E+ RH LV+ +KVE
Sbjct: 564 ETLDATGKWGKNLDDDDHSDEVKQEVEILRHENLVRKLERKLAFAERKLLKAERGLAKVE 623
Query: 650 ESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVK 709
LKPAE++ DPESITDEERFMFRKLGL+MKAFLLLGRRGVFDGTVENMHLHWKYRELVK
Sbjct: 624 VCLKPAEQREDPESITDEERFMFRKLGLKMKAFLLLGRRGVFDGTVENMHLHWKYRELVK 683
Query: 710 IIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPKNLLTK 769
IIVK KTFD KK+ALALEAESGG+LVS+DK++KGYA++VYRG+DY+RP+ LRPKNLLTK
Sbjct: 684 IIVKAKTFDGVKKVALALEAESGGILVSIDKVTKGYAIIVYRGQDYKRPTMLRPKNLLTK 743
Query: 770 RKALARSIELQRQEALLKHVATLESNAGRLRSEIEQMNSVKGTGDEQLYDKLDSAYATXX 829
RKALARSIELQR+E LLKH++T+++ A +LR+EIEQM V GDE+LY+KLD AYA+
Sbjct: 744 RKALARSIELQRREGLLKHISTMQAKAKQLRAEIEQMEKVTDKGDEELYNKLDMAYASSD 803
Query: 830 XXXXXXXXX-AYLEMYAGGNDNED 852
A+ E YA G D E+
Sbjct: 804 EETDEEDDDDAFPETYAEGEDGEE 827
Score = 62 (26.9 bits), Expect = 1.1e-242, Sum P(3) = 1.1e-242
Identities = 20/45 (44%), Positives = 21/45 (46%)
Query: 1 MALVPSRQFCPATA---IFDSFQSSFSKFHGTHFHFFRCGHSIPL 42
MA+ PS FCP T SFQSSF F F R SI L
Sbjct: 1 MAMKPSLHFCPTTVTKKFVYSFQSSFC------FRFLRYSSSISL 39
Score = 38 (18.4 bits), Expect = 1.1e-242, Sum P(3) = 1.1e-242
Identities = 12/49 (24%), Positives = 20/49 (40%)
Query: 851 EDEIDNSTHNLEMESDFPYHAQDQESETELMDSESEAYTVHSTYCASTD 899
E D L + D Y + D+E++ E + +A+ TY D
Sbjct: 781 EKVTDKGDEELYNKLDMAYASSDEETDEE---DDDDAFP--ETYAEGED 824
>TAIR|locus:2094997 [details] [associations]
symbol:EMB1865 "embryo defective 1865" species:3702
"Arabidopsis thaliana" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009793 "embryo
development ending in seed dormancy" evidence=NAS] [GO:0009737
"response to abscisic acid stimulus" evidence=IDA] [GO:0006655
"phosphatidylglycerol biosynthetic process" evidence=RCA]
[GO:0009902 "chloroplast relocation" evidence=RCA] [GO:0010027
"thylakoid membrane organization" evidence=RCA] [GO:0016117
"carotenoid biosynthetic process" evidence=RCA] [GO:0019288
"isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=RCA] [GO:0034660 "ncRNA
metabolic process" evidence=RCA] InterPro:IPR001890 Pfam:PF01985
PROSITE:PS51295 SMART:SM01103 GO:GO:0009737 GO:GO:0009507
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0003723 EMBL:AB026658
Gene3D:3.30.110.60 SUPFAM:SSF75471 HOGENOM:HOG000241574
EMBL:AY063908 IPI:IPI00520842 RefSeq:NP_188468.1 UniGene:At.20890
ProteinModelPortal:Q9LS51 SMR:Q9LS51 STRING:Q9LS51 PaxDb:Q9LS51
PRIDE:Q9LS51 EnsemblPlants:AT3G18390.1 GeneID:821368
KEGG:ath:AT3G18390 TAIR:At3g18390 eggNOG:NOG326934
InParanoid:Q9LS51 OMA:DMKTAHE PhylomeDB:Q9LS51
ProtClustDB:CLSN2684381 ArrayExpress:Q9LS51 Genevestigator:Q9LS51
Uniprot:Q9LS51
Length = 848
Score = 1320 (469.7 bits), Expect = 9.4e-137, Sum P(2) = 9.4e-137
Identities = 280/608 (46%), Positives = 385/608 (63%)
Query: 210 LGLGEEVGSDGEVKFPWEKRKEE------VAEGRWLV--KRRSSRTSLAELTLPESELRR 261
L GEE + EV PWEK +EE V EG V KRR+ SLAELT+ +SELRR
Sbjct: 191 LAEGEESEEEDEVLLPWEKNEEEQAAERVVGEGGVAVMQKRRARAPSLAELTVEDSELRR 250
Query: 262 LRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRMHEILERKT 321
LR + + I AGLTQAV++ I++ W+ E+VRLK A +MK HEI+ER+T
Sbjct: 251 LRRDGMYLRVRINIPKAGLTQAVMEKIYDTWRKEELVRLKFHEVLARDMKTAHEIVERRT 310
Query: 322 GGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMSVNL 381
GG+VIWR+G+ + +YRG+ Y+ P V N+ + L VS A D+ + + + S L
Sbjct: 311 GGMVIWRAGSVMVVYRGLDYKGPPVISNQMAGPKETLFVPDVSSAGDEATNAKDNQSAPL 370
Query: 382 ETASEEQETDFVREVKYEDEVE--KLLDGLGPRYTDWPGCDPLPVDADMLPGIVPGYQPP 439
+ +E E+EVE LLD LGPR+ +W G LPVDAD+LP +PGY+ P
Sbjct: 371 VIKDPIIKNPIRKENMTEEEVEFNSLLDSLGPRFQEWWGTGVLPVDADLLPPTIPGYKTP 430
Query: 440 FRVLPYGVRSTLARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIAL 499
FR+LP G+RS L E TNL+++ + LP HFALGR+R QGLA A++++WEKS IAKIA+
Sbjct: 431 FRLLPTGMRSNLTNAEMTNLRKIGKTLPCHFALGRNRNHQGLAAAILQIWEKSLIAKIAV 490
Query: 500 KRGVQLTTSERMVEDIKKLTGGTLLSRNKDFLVFYRGKNFLSPDVTEALQERERLAKSLQ 559
KRG+Q T ++ M +++K LTGG LL RNK ++V YRGK+FL V L ER+ L K +Q
Sbjct: 491 KRGIQNTNNKLMADEVKTLTGGVLLLRNKYYIVIYRGKDFLPSSVAATLAERQELTKEIQ 550
Query: 560 DEEEQARLRASAFVLPSIETIEKSGTAGTLKETLDANSRWGKRLDDSHKENLVREAEVRR 619
D EE+ R R V P + + AGTL E +A +RWGK + H+E ++ EA
Sbjct: 551 DVEERVRNREIEAVQPVGDKVPAE--AGTLAEFYEAQARWGKEITPDHREKMIEEASRVA 608
Query: 620 HAYLVQXXXXXXXXXXXXXXXXXXXXSKVEESLKPAERQADPESITDEERFMFRKLGLRM 679
+A +V+ SK+E S+ P D E I++EER MFRK+GL+M
Sbjct: 609 NARVVKRIQHKLNLAQSKFQRAEKLLSKIEASMIPNGPDYDQEVISEEERAMFRKVGLKM 668
Query: 680 KAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKKIALALEAESGGVLVSVD 739
KA+L +G RGVFDG +ENMHLHWK+RELVK+I K K ++ A LE ESGGVLV+++
Sbjct: 669 KAYLPIGIRGVFDGVIENMHLHWKHRELVKLISKQKNQAFVEETARLLEYESGGVLVAIE 728
Query: 740 KISKGYAMVVYRGKDYQRPSTLRPKNLLTKRKALARSIELQRQEALLKHVATLESNAGRL 799
K+ KG+A++ YRGK+Y+RP +LRP+NLLTK KAL RSI +QR EAL +H++ LE ++
Sbjct: 729 KVPKGFALIYYRGKNYRRPISLRPRNLLTKAKALKRSIAMQRHEALSQHISELERTIEQM 788
Query: 800 RSEIEQMN 807
+S++ N
Sbjct: 789 QSQLTSKN 796
Score = 40 (19.1 bits), Expect = 9.4e-137, Sum P(2) = 9.4e-137
Identities = 11/48 (22%), Positives = 22/48 (45%)
Query: 850 NEDEIDNSTHNLEMESDFPYHAQDQESETELMDSESEAYTVHSTYCAS 897
+E E +N + + E + +D ES+ + D ES ++ +S
Sbjct: 800 SESEWENDEDDDDDEEEEKDDVEDNESDWDETDGESAISSIEEADMSS 847
>TAIR|locus:2096662 [details] [associations]
symbol:CFM2 "CRM family member 2" species:3702
"Arabidopsis thaliana" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0009507 "chloroplast" evidence=ISM;RCA] [GO:0000372 "Group I
intron splicing" evidence=IMP] [GO:0000373 "Group II intron
splicing" evidence=IMP] InterPro:IPR001890 Pfam:PF01985
PROSITE:PS51295 SMART:SM01103 EMBL:CP002686 GO:GO:0003723
Gene3D:3.30.110.60 SUPFAM:SSF75471 GO:GO:0000373 GO:GO:0000372
EMBL:AY136347 EMBL:BT010594 IPI:IPI00518423 RefSeq:NP_186786.2
UniGene:At.28082 ProteinModelPortal:Q8L7C2 SMR:Q8L7C2 IntAct:Q8L7C2
STRING:Q8L7C2 PaxDb:Q8L7C2 PRIDE:Q8L7C2 EnsemblPlants:AT3G01370.1
GeneID:821288 KEGG:ath:AT3G01370 TAIR:At3g01370 eggNOG:NOG300241
InParanoid:Q8L7C2 OMA:ASMIKLW PhylomeDB:Q8L7C2
ProtClustDB:CLSN2690653 ArrayExpress:Q8L7C2 Genevestigator:Q8L7C2
Uniprot:Q8L7C2
Length = 1011
Score = 1233 (439.1 bits), Expect = 1.6e-125, P = 1.6e-125
Identities = 303/776 (39%), Positives = 436/776 (56%)
Query: 147 KIVEKLKKFGYVXXXXXXXXXXNDERRGQGKERVIEKGSIEDIFYVEEGLLPNARGGFSK 206
+I EKL+ G+V + RR G+E K S +IF LP R G +
Sbjct: 62 RIAEKLRSLGFVEEKHD-----SPTRRITGEES--GKNSPGEIFVPLPKQLPIHRVGHTI 114
Query: 207 ES-------PL---GLGEEVGSDGEVKFPWEKRKEEVAEGRWLVKRRSSRTSLAELTLPE 256
++ P+ G G + E+K W+K E K+ SLAELTLP
Sbjct: 115 DTSWSTPSYPVPKPGSGTAISRYHELKRVWKKETEMER------KKEEKVPSLAELTLPP 168
Query: 257 SELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRMHEI 316
+ELRRLR + + K +I AG+T+ +V+ IHE+W+T+E+V++ E +NMKR H++
Sbjct: 169 AELRRLRTVGIRLTKKLKIGKAGITEGIVNGIHERWRTTEVVKIFCEDISRMNMKRTHDV 228
Query: 317 LERKTGGLVIWRSGTAVSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQAT----DKQ-I 371
LE KTGGLVIWRSG+ + LYRGV+Y+ P ++ + ASS+ Q +KQ I
Sbjct: 229 LETKTGGLVIWRSGSKILLYRGVNYQYPYFVSDRDLAHEAASGASSMDQGVVDSREKQSI 288
Query: 372 HKQISMSVNLETASE--EQ---ETDFVR-----EVKYEDEVEKLLDGLGPRYTDWPGCDP 421
+ + S+ + Q D VR EV+ +E ++LL+GLGPR+TDW DP
Sbjct: 289 AESSAPSITNKMVKPMLTQGVGSPDKVRFQLPGEVQLVEEADRLLEGLGPRFTDWWAYDP 348
Query: 422 LPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHFALGRSRQLQGL 481
LPVD D+LP +VP Y+ PFR+LPYGV L E T ++RL R LP HFALGR+R LQGL
Sbjct: 349 LPVDGDLLPAVVPDYRRPFRLLPYGVSPKLTDDEMTTIRRLGRPLPCHFALGRNRNLQGL 408
Query: 482 AVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDFLVFYRGKNFLS 541
AVA++KLWEK +AKIA+KRGVQ T SE M E++K LTGGTL+SR+KDF+V YRGK+FL
Sbjct: 409 AVAIVKLWEKCELAKIAVKRGVQNTNSELMAEELKWLTGGTLISRDKDFIVLYRGKDFLP 468
Query: 542 PDVTEALQERERLAKSLQDEEEQARLRASAFVLPSIETIEKSGTAGTLKETLDANSRWGK 601
V+ A++ER R +++ + + E I+ +KE ++ ++ K
Sbjct: 469 SAVSSAIEERRRQTMIMENSSVHGNK-----LTENEEEIKPRA----VKEDIELEAKDQK 519
Query: 602 RLDDSHKENLVREAEVRRHAYLVQXXXXXXXXXXXXXXXXXXXXSKVEESLKPAERQADP 661
+H+ ++ + +++ + +E P D
Sbjct: 520 DHIQTHQ---MKSRQRNSPEAILEKTSMKLSMALEKKANAEKVLADLENRESPQLSDIDK 576
Query: 662 ESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAK 721
E IT++E++M RK+GL+MK FLLLGRRGVFDGT+ENMHLHWKYRELVKII + + A
Sbjct: 577 EGITNDEKYMLRKIGLKMKPFLLLGRRGVFDGTIENMHLHWKYRELVKIICNEYSIEAAH 636
Query: 722 KIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPKNLLTKRKALARSIELQR 781
K+A LEAESGG+LV+V+ +SKGYA++VYRGK+Y+RP LRP+ LL+KR+AL RS+E QR
Sbjct: 637 KVAEILEAESGGILVAVEMVSKGYAIIVYRGKNYERPQCLRPQTLLSKREALKRSVEAQR 696
Query: 782 QEALLKHVATLESNAGRLRSEIEQMNSVK-----GTGDEQLYDKLDSAYATXXXXXXXXX 836
+++L HV L +N L ++ + ++ G + ++ T
Sbjct: 697 RKSLKLHVLKLSNNIEELNRQLVEDSATNETWSDGESSNMMVEEETENQHTEPEKAREKI 756
Query: 837 XXAY---LEMYAGGNDN-ED----EIDN-STHNLEMESDFPYHAQDQESETELMDS 883
Y L + + G +N ED E+D +T + E + D A Q E +DS
Sbjct: 757 ELGYSSDLSVPSSGEENWEDDSEGEVDPLTTSSQEYQEDESESASSQRHEGNSLDS 812
>TAIR|locus:2181372 [details] [associations]
symbol:CRS1 "ortholog of maize chloroplast splicing
factor CRS1" species:3702 "Arabidopsis thaliana" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0009507 "chloroplast" evidence=ISM]
[GO:0000373 "Group II intron splicing" evidence=IDA]
InterPro:IPR001890 Pfam:PF01985 PROSITE:PS51295 SMART:SM01103
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0009570 GO:GO:0006417
GO:GO:0006397 GO:GO:0003723 GO:GO:0030529 Gene3D:3.30.110.60
SUPFAM:SSF75471 GO:GO:0000373 EMBL:AL391148 IPI:IPI00521200
PIR:T51488 RefSeq:NP_197122.2 UniGene:At.50459 UniGene:At.54863
ProteinModelPortal:Q9LF10 SMR:Q9LF10 PaxDb:Q9LF10 PRIDE:Q9LF10
GeneID:831476 KEGG:ath:AT5G16180 TAIR:At5g16180 eggNOG:NOG322716
HOGENOM:HOG000241574 InParanoid:Q9LF10 OMA:KIERSNQ
ArrayExpress:Q9LF10 Genevestigator:Q9LF10 Uniprot:Q9LF10
Length = 720
Score = 783 (280.7 bits), Expect = 4.8e-95, Sum P(2) = 4.8e-95
Identities = 174/405 (42%), Positives = 248/405 (61%)
Query: 384 ASEEQETDFVREVKYEDEVEKLLDGLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVL 443
+SE Q D + YE E ++LLDGLGPRY DW P PVDAD+LP +V GY P R
Sbjct: 296 SSEGQ--DEISSSLYEREADRLLDGLGPRYMDWWMRRPFPVDADLLPEVVNGYMTPSRRC 353
Query: 444 PYGVRSTLARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGV 503
P R+ L +E T L+ +A+ LP HF LGR+ LQGLA A++KLWEK IAKIA+K G
Sbjct: 354 PPNTRAKLTDEELTYLRNIAQPLPFHFVLGRNYGLQGLASAIVKLWEKCIIAKIAIKWGA 413
Query: 504 QLTTSERMVEDIKKLTGGTLLSRNKDFLVFYRGKNFLSPDVTEALQERERLAKSLQDEEE 563
T +E M ++++ LTGG L+ RNK +V YRGK+FLS +V + +++RERL Q EE
Sbjct: 414 LNTNNEEMADELRYLTGGVLILRNKYLIVLYRGKDFLSDEVADLVEDRERLLSRYQHFEE 473
Query: 564 QARLRASAF--VLPSIETIEKSGTAGTLKETLDANSRWGKRLDDSHKENLVREAEVRRHA 621
R V+ + + ++++ +GTL E + ++G+ +D NL EAE R
Sbjct: 474 TKRESDIELLEVVTNGKQLKETNKSGTLLEFQELQRKFGE-MDP---RNLETEAEKARLE 529
Query: 622 YLVQXXXXXXXXXXXXXXXXXXXXSKVEESLKPAERQADPESITDEERFMFRKLGLRMKA 681
++ K+ KP+E D E +T+EER R++GL+M +
Sbjct: 530 KELKSQEHKLSILKSKIEKSNMELFKLNSLWKPSEGDDDIEILTNEERECLRRIGLKMNS 589
Query: 682 FLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKI 741
L+LGRRGVF G +E +H HWK+RE+ K+I K F + A ALE ES GVL+S++K+
Sbjct: 590 SLVLGRRGVFFGVMEGLHQHWKHREVAKVITMQKLFSRVVYTAKALETESNGVLISIEKL 649
Query: 742 SKGYAMVVYRGKDYQRPST-LRPKNLLTKRKALARSIELQRQEAL 785
+G+A+++YRGK+Y+RPS+ L +NLLTKRKAL RS+ +QR +L
Sbjct: 650 KEGHAILIYRGKNYKRPSSKLMAQNLLTKRKALQRSVVMQRLGSL 694
Score = 182 (69.1 bits), Expect = 4.8e-95, Sum P(2) = 4.8e-95
Identities = 46/135 (34%), Positives = 73/135 (54%)
Query: 223 KFPWEKRKEEVAEGRWLVKRRSSRTSLAELTLPESELRRLRNLTFQTKSKTRIKGAGLTQ 282
K PWE+ +E R +K+ S T+ AEL L E L RLR + + ++ AG+T+
Sbjct: 179 KMPWEREEERFILRR--MKKESVPTT-AELILDEGLLNRLRREASKMRKWVNVRKAGVTE 235
Query: 283 AVVDIIHEKWKTSEIVRLKIEGAPALNMKRMHEILERKTGGLVIWRSGTAVSLYRG-VSY 341
VV+ I WK +E+ ++ + NM+R EI+E KTGGLV+ + +YRG SY
Sbjct: 236 LVVNKIKSMWKLNELAMVRFDVPLCRNMERAQEIIEMKTGGLVVLSKKEFLVVYRGGPSY 295
Query: 342 EVPSV-QLNKRIYKR 355
+++ +Y+R
Sbjct: 296 SSEGQDEISSSLYER 310
Score = 73 (30.8 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
Identities = 34/129 (26%), Positives = 53/129 (41%)
Query: 451 LARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSER 510
L +E L+R+ + LGR G+ + + W+ +AK+ +Q S R
Sbjct: 572 LTNEERECLRRIGLKMNSSLVLGRRGVFFGVMEGLHQHWKHREVAKVIT---MQKLFS-R 627
Query: 511 MVEDIKKL---TGGTLLSRNK----DFLVFYRGKNFLSPDVTEALQERERLAKSLQDEEE 563
+V K L + G L+S K ++ YRGKN+ P Q K+LQ
Sbjct: 628 VVYTAKALETESNGVLISIEKLKEGHAILIYRGKNYKRPSSKLMAQNLLTKRKALQRSVV 687
Query: 564 QARLRASAF 572
RL + F
Sbjct: 688 MQRLGSLKF 696
>TAIR|locus:2094438 [details] [associations]
symbol:LOH1 "LAG One Homologue 1" species:3702
"Arabidopsis thaliana" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0009507 "chloroplast" evidence=ISM] [GO:0042761 "very
long-chain fatty acid biosynthetic process" evidence=IGI]
[GO:0050291 "sphingosine N-acyltransferase activity" evidence=IGI]
InterPro:IPR001890 Pfam:PF01985 PROSITE:PS51295 SMART:SM01103
GO:GO:0009507 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0003723
EMBL:AB025639 GO:GO:0042761 Gene3D:3.30.110.60 SUPFAM:SSF75471
GO:GO:0050291 KO:K01148 EMBL:AK176804 IPI:IPI00542084
RefSeq:NP_189171.2 UniGene:At.37388 ProteinModelPortal:Q67XL4
SMR:Q67XL4 PaxDb:Q67XL4 PRIDE:Q67XL4 EnsemblPlants:AT3G25440.1
GeneID:822128 KEGG:ath:AT3G25440 TAIR:At3g25440 eggNOG:NOG254408
HOGENOM:HOG000240887 InParanoid:Q67XL4 OMA:RRYIPRL PhylomeDB:Q67XL4
ProtClustDB:CLSN2681576 Genevestigator:Q67XL4 Uniprot:Q67XL4
Length = 444
Score = 279 (103.3 bits), Expect = 1.9e-21, P = 1.9e-21
Identities = 58/160 (36%), Positives = 100/160 (62%)
Query: 647 KVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRE 706
K+E S + AE DPE +T EE F + K+GL+ K ++ +GRRG++ G + NMHLHWK +
Sbjct: 161 KLEPS-ESAETTHDPEILTPEEHFYYLKMGLKCKNYVPVGRRGIYQGVILNMHLHWKKHQ 219
Query: 707 LVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPST--LRPK 764
+++++K T D+ K+IA+ L +GG+++ V + G +++YRGK+Y +P T + P+
Sbjct: 220 TLQVVIKTFTPDEVKEIAVELARLTGGIVLDVHE---GNTIIMYRGKNYVQPPTEIMSPR 276
Query: 765 NLLTKRKALARSIELQRQEALLKHVATLESNAGRLRSEIE 804
L ++KAL +S A+ K++ LE L+++ E
Sbjct: 277 ITLPRKKALDKSKCRDALRAVRKYIPRLEQELQLLQAQAE 316
>TAIR|locus:2123276 [details] [associations]
symbol:AT4G13070 species:3702 "Arabidopsis thaliana"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0009507 "chloroplast"
evidence=ISM] InterPro:IPR001890 Pfam:PF01985 PROSITE:PS51295
SMART:SM01103 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0003723
Gene3D:3.30.110.60 SUPFAM:SSF75471 EMBL:BT022043 EMBL:BT029203
EMBL:AK175251 EMBL:AK176471 EMBL:AK176848 IPI:IPI00516587
RefSeq:NP_193043.2 UniGene:At.43316 ProteinModelPortal:Q67YJ7
SMR:Q67YJ7 EnsemblPlants:AT4G13070.1 GeneID:826921
KEGG:ath:AT4G13070 TAIR:At4g13070 eggNOG:NOG314366
HOGENOM:HOG000241798 InParanoid:Q67YJ7 OMA:NELRFYR PhylomeDB:Q67YJ7
ProtClustDB:CLSN2918582 Genevestigator:Q67YJ7 Uniprot:Q67YJ7
Length = 343
Score = 245 (91.3 bits), Expect = 1.3e-18, P = 1.3e-18
Identities = 62/160 (38%), Positives = 88/160 (55%)
Query: 647 KVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRE 706
K + PAE DPES+T+EE+ ++ G + K F+L+GRRGVF G V N+HLHWK E
Sbjct: 166 KYDVPKSPAEPY-DPESLTEEEQHYLKRTGEKRKNFVLVGRRGVFGGVVLNLHLHWKKHE 224
Query: 707 LVKIIVK-VKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPKN 765
VK+I K Q + A L S G+++ V +V+YRGK+Y RP + P +
Sbjct: 225 TVKVICKPCNKPGQVHEYAEELARLSKGIVIDV---KPNNTIVLYRGKNYVRPEVMSPVD 281
Query: 766 LLTKRKALARSIELQRQEALLKHVATLESNAGRLRSEIEQ 805
L+K KAL E R E L+H + +L E+E+
Sbjct: 282 TLSKDKAL----EKYRYEQSLEHTSEFIE---KLEKELEE 314
>TAIR|locus:2091458 [details] [associations]
symbol:AT3G27550 species:3702 "Arabidopsis thaliana"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0009507 "chloroplast"
evidence=ISM] InterPro:IPR001890 Pfam:PF01985 PROSITE:PS51295
SMART:SM01103 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0003723
Gene3D:3.30.110.60 SUPFAM:SSF75471 EMBL:AB025626 IPI:IPI00525575
RefSeq:NP_189392.1 UniGene:At.37034 ProteinModelPortal:Q9LT57
SMR:Q9LT57 EnsemblPlants:AT3G27550.1 GeneID:822377
KEGG:ath:AT3G27550 TAIR:At3g27550 eggNOG:NOG248894
HOGENOM:HOG000241218 InParanoid:Q9LT57 OMA:RMRKESG PhylomeDB:Q9LT57
ProtClustDB:CLSN2685015 Genevestigator:Q9LT57 Uniprot:Q9LT57
Length = 491
Score = 238 (88.8 bits), Expect = 3.0e-16, Sum P(2) = 3.0e-16
Identities = 48/140 (34%), Positives = 84/140 (60%)
Query: 660 DPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQ 719
DPE T E+ F+K+G + K ++ +G RGVF G V+NMH+HWK+ E V++ ++
Sbjct: 88 DPELFTSEQVQAFKKIGFKNKNYVPVGVRGVFGGVVQNMHMHWKFHETVQVCCDNFPKEK 147
Query: 720 AKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPKNLLTKRKALARSIEL 779
K++A + SGGV++++ + ++++RG++Y++P L P N LTKRKAL ++
Sbjct: 148 IKEMASMIARLSGGVVINIHNVK---TIIMFRGRNYRQPKNLIPVNTLTKRKALFKARFE 204
Query: 780 QRQEALLKHVATLESNAGRL 799
Q E+ ++ E R+
Sbjct: 205 QALESQKLNIKKTEQQLRRM 224
Score = 42 (19.8 bits), Expect = 3.0e-16, Sum P(2) = 3.0e-16
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 877 ETELMDSESEAYTVHSTYCASTDIVEEDN 905
+ + DSE E + Y +S+D E++N
Sbjct: 423 DNTMWDSEDEEDAPPANYISSSDDDEDEN 451
>TAIR|locus:2056558 [details] [associations]
symbol:AT2G28480 species:3702 "Arabidopsis thaliana"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0009507 "chloroplast"
evidence=ISM] InterPro:IPR001890 Pfam:PF01985 PROSITE:PS51295
SMART:SM01103 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003723
EMBL:AC006587 Gene3D:3.30.110.60 SUPFAM:SSF75471
HOGENOM:HOG000241798 EMBL:BT011753 EMBL:AK226713 IPI:IPI00526248
PIR:D84685 RefSeq:NP_180415.1 UniGene:At.50106
ProteinModelPortal:Q9SK10 SMR:Q9SK10 EnsemblPlants:AT2G28480.1
GeneID:817396 KEGG:ath:AT2G28480 TAIR:At2g28480 eggNOG:NOG245924
InParanoid:Q9SK10 OMA:ANRKDPR PhylomeDB:Q9SK10
ProtClustDB:CLSN2913133 Genevestigator:Q9SK10 Uniprot:Q9SK10
Length = 372
Score = 226 (84.6 bits), Expect = 8.8e-16, P = 8.8e-16
Identities = 51/133 (38%), Positives = 75/133 (56%)
Query: 661 PESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQA 720
P IT EERF +K+G + ++ +GRRGVF G + NMHLHWK E VK+I Q
Sbjct: 161 PHEITGEERFYLKKMGQKRSNYVPIGRRGVFGGVILNMHLHWKKHETVKVICNNSKPGQV 220
Query: 721 KKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPKNLLTKRKALARSIELQ 780
++ A L SGGV V++ I ++ YRGK Y +P + P + L+K++A +S Q
Sbjct: 221 QQYAEELAKLSGGVPVNI--IGDD-TIIFYRGKGYVQPQVMSPIDTLSKKRAYEKSKYEQ 277
Query: 781 RQEALLKHVATLE 793
E++ +A E
Sbjct: 278 SLESVRHFIAIAE 290
>TAIR|locus:2126694 [details] [associations]
symbol:AT4G31010 species:3702 "Arabidopsis thaliana"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
[GO:0000956 "nuclear-transcribed mRNA catabolic process"
evidence=RCA] [GO:0010048 "vernalization response" evidence=RCA]
[GO:0048573 "photoperiodism, flowering" evidence=RCA]
InterPro:IPR001890 Pfam:PF01985 PROSITE:PS51295 SMART:SM01103
GO:GO:0005739 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0008380
GO:GO:0006397 GO:GO:0003723 GO:GO:0030529 EMBL:AL022198
EMBL:AL161578 EMBL:AY042864 EMBL:AY072146 EMBL:AY096489
IPI:IPI00527272 PIR:B85363 RefSeq:NP_194830.2 UniGene:At.31782
UniGene:At.71202 ProteinModelPortal:Q8VYD9 SMR:Q8VYD9 PaxDb:Q8VYD9
PRIDE:Q8VYD9 EnsemblPlants:AT4G31010.1 GeneID:829228
KEGG:ath:AT4G31010 TAIR:At4g31010 eggNOG:NOG290479
HOGENOM:HOG000242611 InParanoid:Q8VYD9 OMA:MVRDAFL PhylomeDB:Q8VYD9
ProtClustDB:CLSN2686958 Genevestigator:Q8VYD9 Gene3D:3.30.110.60
SUPFAM:SSF75471 Uniprot:Q8VYD9
Length = 405
Score = 150 (57.9 bits), Expect = 2.9e-11, Sum P(2) = 2.9e-11
Identities = 41/105 (39%), Positives = 62/105 (59%)
Query: 241 KRRSSRTSLAELTLPESELRRLRNLTFQTKSKTRIK-GA-GLTQAVVDIIHEKWKTSEIV 298
KRR R + +L E+E + L L + K+K ++ G GLT +++ ++ WK +E V
Sbjct: 146 KRRKVREKIQGASLTEAERKFLVELCQRNKTKRQVNLGRDGLTHNMLNDVYNHWKHAEAV 205
Query: 299 RLKIEGAPALNMKRMHEILERKTGGLVIWR-SGTAVSLYRGVSYE 342
R+K G P L+MK + LE KT G V+ + SGT V LYRG +Y+
Sbjct: 206 RVKCLGVPTLDMKNVIFHLEDKTFGQVVSKHSGTLV-LYRGRNYD 249
Score = 85 (35.0 bits), Expect = 2.9e-11, Sum P(2) = 2.9e-11
Identities = 32/113 (28%), Positives = 53/113 (46%)
Query: 647 KVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRE 706
K E + P + + ++ +E RK GL + A L + G + V + + E
Sbjct: 262 KPHEPVYPRLIKTTIDGLSIDETKAMRKKGLAVPALTKLAKNGYYGSLVPMVRDAFLVSE 321
Query: 707 LVKI-IVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRP 758
LV+I + ++ D KKI L +LV+ DK +V++RGKDY+ P
Sbjct: 322 LVRIDCLGLERKDY-KKIGAKLRDLVPCILVTFDKEQ----VVIWRGKDYKPP 369
Score = 46 (21.3 bits), Expect = 3.1e-07, Sum P(2) = 3.1e-07
Identities = 22/111 (19%), Positives = 54/111 (48%)
Query: 436 YQPPFRVLPYGVRST---LARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIK-LWEK 491
++P V P +++T L+ E +++ +P L ++ G V M++ +
Sbjct: 261 WKPHEPVYPRLIKTTIDGLSIDETKAMRKKGLAVPALTKLAKNGYY-GSLVPMVRDAFLV 319
Query: 492 SSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDFLVFYRGKNFLSP 542
S + +I G++ +++ ++ L L++ +K+ +V +RGK++ P
Sbjct: 320 SELVRIDCL-GLERKDYKKIGAKLRDLVPCILVTFDKEQVVIWRGKDYKPP 369
>TAIR|locus:2160195 [details] [associations]
symbol:AT5G54890 species:3702 "Arabidopsis thaliana"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001890 Pfam:PF01985 PROSITE:PS51295 SMART:SM01103
GO:GO:0005739 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0008380
GO:GO:0006397 GO:GO:0003723 GO:GO:0030529 HOGENOM:HOG000242611
ProtClustDB:CLSN2686958 Gene3D:3.30.110.60 SUPFAM:SSF75471
EMBL:AB005232 EMBL:BP797158 IPI:IPI00517289 RefSeq:NP_200300.1
UniGene:At.43134 ProteinModelPortal:Q9FFU1 PRIDE:Q9FFU1
EnsemblPlants:AT5G54890.1 GeneID:835580 KEGG:ath:AT5G54890
TAIR:At5g54890 eggNOG:NOG298573 InParanoid:Q9FFU1 OMA:FRYSYSE
PhylomeDB:Q9FFU1 Genevestigator:Q9FFU1 Uniprot:Q9FFU1
Length = 358
Score = 151 (58.2 bits), Expect = 3.2e-09, Sum P(2) = 3.2e-09
Identities = 41/117 (35%), Positives = 65/117 (55%)
Query: 232 EVAEGRWLVKRRSSRTSLAELTLPESELRRLRNLTFQTKSKTRI---KGAGLTQAVVDII 288
E+ + +W+ +R +R L E TL E E+ L + +I KG G+T ++D I
Sbjct: 125 EIDQSQWVEER--ARV-LGE-TLTEDEVTELIERYRHSDCTRQINLGKG-GVTHNMIDDI 179
Query: 289 HEKWKTSEIVRLKIEGAPALNMKRMHEILERKTGGLVIWRSGTAVSLYRGVSYEVPS 345
H WK +E VR+K G P L+M + LE K+GG +++R+ + LYRG +Y+ S
Sbjct: 180 HNHWKKAEAVRIKCLGVPTLDMDNICFHLEEKSGGKIVYRNINILVLYRGRNYDPKS 236
Score = 62 (26.9 bits), Expect = 3.2e-09, Sum P(2) = 3.2e-09
Identities = 21/87 (24%), Positives = 39/87 (44%)
Query: 667 EERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKKIALA 726
EE R GL A + L R GV+ V + ++ E+V++ K+I +
Sbjct: 266 EETKEMRNRGLHSPALMKLTRNGVYVNVVGRVREEFETEEIVRLDCTHVGMSDCKRIGVK 325
Query: 727 LEAESGGVLVSVDKISKGYAMVVYRGK 753
L+ ++ V + K ++++RGK
Sbjct: 326 LKE----MVPCVPILFKDEQIILWRGK 348
>TAIR|locus:2028100 [details] [associations]
symbol:CAF2 species:3702 "Arabidopsis thaliana"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0000373 "Group II intron splicing" evidence=IDA]
InterPro:IPR001890 Pfam:PF01985 PROSITE:PS51295 SMART:SM01103
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0009570 GO:GO:0006397
GO:GO:0003723 GO:GO:0030529 EMBL:AC007945 ProtClustDB:CLSN2686958
Gene3D:3.30.110.60 SUPFAM:SSF75471 GO:GO:0000373 EMBL:AC005292
EMBL:AY062732 EMBL:AY114649 IPI:IPI00545122 RefSeq:NP_173754.2
UniGene:At.26886 ProteinModelPortal:Q9LDA9 SMR:Q9LDA9 STRING:Q9LDA9
PRIDE:Q9LDA9 EnsemblPlants:AT1G23400.1 GeneID:838948
KEGG:ath:AT1G23400 TAIR:At1g23400 eggNOG:NOG328950
HOGENOM:HOG000237818 InParanoid:Q9LDA9 OMA:RRQEICK PhylomeDB:Q9LDA9
Genevestigator:Q9LDA9 Uniprot:Q9LDA9
Length = 564
Score = 133 (51.9 bits), Expect = 1.0e-08, Sum P(2) = 1.0e-08
Identities = 23/63 (36%), Positives = 39/63 (61%)
Query: 279 GLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRMHEILERKTGGLVIWRSGTAVSLYRG 338
G T ++++IH WK + +++ +G P ++M + +LE KTGG +I R G V L+RG
Sbjct: 228 GFTHNMLELIHSHWKRRRVCKVRCKGVPTVDMNNVCRVLEEKTGGEIIHRVGGVVYLFRG 287
Query: 339 VSY 341
+Y
Sbjct: 288 RNY 290
Score = 83 (34.3 bits), Expect = 1.0e-08, Sum P(2) = 1.0e-08
Identities = 48/230 (20%), Positives = 85/230 (36%)
Query: 658 QADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTF 717
Q PE +T EE FR G ++ L + GV+ V+++ ++ LVK+
Sbjct: 315 QEVPEGLTKEEAHEFRVKGKSLRPICKLSKNGVYVSLVKDVRDAFELSSLVKVDCPGLEP 374
Query: 718 DQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQR---PSTLRPKNLLTKRKALA 774
KKI L+ VL+S D ++++RG++++ + L P T
Sbjct: 375 SDYKKIGAKLKELVPCVLLSFDDEQ----ILMWRGREWKSRFVDNPLIPSLSETNTTNEL 430
Query: 775 RSIELQRQEALLKHVATLESNAGRLRSEIEQMNSVKGT-------GDEQLYDKLDSAYAT 827
+ +E + + +T S+ + + S K G + L K++ T
Sbjct: 431 DPSDKPSEEQTVANPSTTISSPKMISLWQRALESSKAVILEELDLGPDDLLKKVEELEGT 490
Query: 828 XXXXXXXXXXXAYLEMYAGGNDNEDEIDNST-HNLEMESDFPYHAQDQES 876
D DE D S + +++ DF D ES
Sbjct: 491 SLAAEHTYTAMVLSNTDGAAEDYVDEKDRSEEYYSDIDDDFDDECSDDES 540
Score = 60 (26.2 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
Identities = 25/111 (22%), Positives = 51/111 (45%)
Query: 438 PPFRVLPYGVRSTLARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKI 497
P + L V L ++EA + + L P L ++ L + +E SS+ K+
Sbjct: 308 PVYPKLIQEVPEGLTKEEAHEFRVKGKSLRPICKLSKNGVYVSLVKDVRDAFELSSLVKV 367
Query: 498 ALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDFLVFYRGKNFLSPDVTEAL 548
G++ + +++ +K+L LLS + + ++ +RG+ + S V L
Sbjct: 368 DCP-GLEPSDYKKIGAKLKELVPCVLLSFDDEQILMWRGREWKSRFVDNPL 417
>TAIR|locus:2061604 [details] [associations]
symbol:CAF1 species:3702 "Arabidopsis thaliana"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0000373 "Group II intron splicing" evidence=IDA]
[GO:0006364 "rRNA processing" evidence=RCA] [GO:0006399 "tRNA
metabolic process" evidence=RCA] [GO:0009658 "chloroplast
organization" evidence=RCA] InterPro:IPR001890 Pfam:PF01985
PROSITE:PS51295 SMART:SM01103 GO:GO:0009570 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0006397 GO:GO:0003723 GO:GO:0030529
EMBL:AC006081 HOGENOM:HOG000242611 ProtClustDB:CLSN2686958
Gene3D:3.30.110.60 SUPFAM:SSF75471 EMBL:AY045882 EMBL:BT004337
IPI:IPI00534960 PIR:A84584 RefSeq:NP_565462.1 UniGene:At.13487
ProteinModelPortal:Q9SL79 SMR:Q9SL79 STRING:Q9SL79 PaxDb:Q9SL79
PRIDE:Q9SL79 ProMEX:Q9SL79 EnsemblPlants:AT2G20020.1 GeneID:816521
KEGG:ath:AT2G20020 TAIR:At2g20020 eggNOG:NOG320222
InParanoid:Q9SL79 OMA:RRRVCKI PhylomeDB:Q9SL79
Genevestigator:Q9SL79 GO:GO:0000373 Uniprot:Q9SL79
Length = 701
Score = 134 (52.2 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 29/88 (32%), Positives = 49/88 (55%)
Query: 254 LPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRM 313
L + E+R L +T + + GLT +++ IH+ WK + ++K +G ++M +
Sbjct: 243 LTKEEVRELVTSCLKTTRQLNMGRDGLTHNMLNNIHDLWKRRRVCKIKCKGVCTVDMDNV 302
Query: 314 HEILERKTGGLVIWRSGTAVSLYRGVSY 341
E LE K GG VI+R G + L+RG +Y
Sbjct: 303 CEQLEEKIGGKVIYRRGGVLFLFRGRNY 330
Score = 84 (34.6 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 28/107 (26%), Positives = 51/107 (47%)
Query: 658 QADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTF 717
Q PE +T +E R+ G + LG+ GV+ V+N+ ++ ELV+I +
Sbjct: 355 QQVPEGLTRQEATNMRRKGRELMPICKLGKNGVYCDLVKNVKEAFEVCELVRIDCQGMKG 414
Query: 718 DQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPK 764
+KI L+ VLVS + ++++RG++++ T K
Sbjct: 415 SDFRKIGAKLKDLVPCVLVSFENEQ----ILIWRGREWKSSLTTPDK 457
Score = 83 (34.3 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 32/136 (23%), Positives = 65/136 (47%)
Query: 432 IVPGYQPPFRVLPYGVRSTLARKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEK 491
+ P Y + +P G L R+EATN++R R L P LG++ L + + +E
Sbjct: 346 VAPVYPRLIQQVPEG----LTRQEATNMRRKGRELMPICKLGKNGVYCDLVKNVKEAFEV 401
Query: 492 SSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNKDFLVFYRGKNFLS----PDVTEA 547
+ +I + G++ + ++ +K L L+S + ++ +RG+ + S PD
Sbjct: 402 CELVRIDCQ-GMKGSDFRKIGAKLKDLVPCVLVSFENEQILIWRGREWKSSLTTPDKKGD 460
Query: 548 LQERERLAKSLQDEEE 563
+ E + +L +++E
Sbjct: 461 ILEDIEVDTALPEDDE 476
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.315 0.132 0.376 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 908 852 0.00082 122 3 11 22 0.43 34
37 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 12
No. of states in DFA: 630 (67 KB)
Total size of DFA: 403 KB (2196 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 81.79u 0.10s 81.89t Elapsed: 00:00:04
Total cpu time: 81.79u 0.10s 81.89t Elapsed: 00:00:04
Start: Tue May 21 13:43:18 2013 End: Tue May 21 13:43:22 2013