BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002557
(908 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FYT6|CRS1_MAIZE Chloroplastic group IIA intron splicing facilitator CRS1,
chloroplastic OS=Zea mays GN=CRS1 PE=1 SV=1
Length = 715
Score = 383 bits (983), Expect = e-105, Method: Compositional matrix adjust.
Identities = 214/513 (41%), Positives = 321/513 (62%), Gaps = 18/513 (3%)
Query: 274 RIKGAGLTQAVVDIIHEKWKTSE-IVRLKIEGAPALNMKRMHEILERKTGGLVIWRSGTA 332
R K AG+T VV + +W + E + ++I +M R EILE KTGGLV+W G
Sbjct: 190 RAKKAGVTDEVVKEVRREWASGEELAAVRIVEPLRRSMDRAREILEIKTGGLVVWTKGDM 249
Query: 333 VSLYRGVSYEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMSVNLETASEEQETDF 392
+YRG Y Q N + S +HK + N ++ +++ +
Sbjct: 250 HFVYRGSKY-----QQN-----------AKHSHTFLTNVHKDDAFQENDQSICGQKDEEP 293
Query: 393 VREVKYEDEVEKLLDGLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLA 452
V+ YE EV +LLD LGPR+ DW PLPVDAD+LP VPG + P+R+ P GVR TLA
Sbjct: 294 VKGTLYEREVNRLLDTLGPRFVDWWWDTPLPVDADLLPEFVPGSKTPYRLCPPGVRPTLA 353
Query: 453 RKEATNLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMV 512
+E T L++LAR+LP HFALGR+ +LQGLA A++KLWEKS IAKIA+K G+Q T +E+M
Sbjct: 354 DEELTYLRKLARLLPTHFALGRNTRLQGLAAAILKLWEKSLIAKIAVKIGIQNTNNEQMA 413
Query: 513 EDIKKLTGGTLLSRNKDFLVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRASAF 572
++K LTGGT++ RNKDF++ YRGK+FL V + + +RE Q +EE+ARL+A
Sbjct: 414 WNLKHLTGGTVILRNKDFIILYRGKDFLPGGVAQTVIQREAQVHDEQVKEEEARLKA-VD 472
Query: 573 VLPSIETIEKSGTAGTLKETLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLA 632
L + + + + GT +E ++++ ++ + EAE R ++ E KL+
Sbjct: 473 SLQMVGELSEESSLGTFREYQGFHAKFVHENTENSNTMIELEAEKYRLEKELKDHEWKLS 532
Query: 633 RAERKLLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFD 692
+K+ R+ +AL+K+ S P+E+ AD E +T+EE+ MFR++G +M +LLGRRG+FD
Sbjct: 533 VLNKKIERSNQALAKLHSSWSPSEQSADREHLTEEEKIMFRRIGRKMDGLVLLGRRGIFD 592
Query: 693 GTVENMHLHWKYRELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRG 752
G +E +H HWK++E+VK+I K Q A LE E+GG+L++V+K++ +A+++YRG
Sbjct: 593 GVIEEIHQHWKHKEVVKVITKQNQTRQIMYAASLLEVETGGILIAVEKLTTSHAIILYRG 652
Query: 753 KDYQRPSTLRPKNLLTKRKALARSIELQRQEAL 785
K+Y+RP+ NLLTKR+AL RSIE+QR+ ++
Sbjct: 653 KNYRRPAKSSFSNLLTKREALRRSIEVQRRGSM 685
>sp|Q6YYA3|CRS1_ORYSJ Chloroplastic group IIA intron splicing facilitator CRS1,
chloroplastic OS=Oryza sativa subsp. japonica
GN=Os08g0360100 PE=2 SV=1
Length = 725
Score = 380 bits (975), Expect = e-104, Method: Compositional matrix adjust.
Identities = 224/575 (38%), Positives = 345/575 (60%), Gaps = 25/575 (4%)
Query: 224 FPWEKRKEEVAEGRWLVKRRSSRTSL---AELTLPESELRRLRNLTFQTKSKTRIKGAGL 280
PW ++E + +V RR +T + AE L EL RLR + R K AG+
Sbjct: 125 VPWAAARDEETK---VVLRREKKTRVPTRAETELEAGELERLRRAARGKERWARAKKAGI 181
Query: 281 TQAVVDIIHEKW-KTSEIVRLKIEGAPALNMKRMHEILERKTGGLVIWRSGTAVSLYRGV 339
T VV+ + +W K E+ ++I M R EILE KTGGLV+W G +YRG
Sbjct: 182 TDEVVEEVRGQWAKGQELAGVRIVEPLRRCMDRAREILEIKTGGLVVWTRGGIHFVYRGS 241
Query: 340 SYEVPSVQLNKRIYKRNE--LPASSVSQATDKQIHKQISMSVNLETASEEQETDFVREVK 397
SY + + + ++ NE P +S + + + + N +++++ ++
Sbjct: 242 SY-LENAKRHRDFVNYNEELSPVTSNNPTSQGKYWSKDETLTNDNDEADDKDDKPIKGTL 300
Query: 398 YEDEVEKLLDGLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEAT 457
YE EV +LLD LGPR+ DW PLPVDAD+LP +VP ++ PFR P GVR LA +E T
Sbjct: 301 YEREVNRLLDSLGPRFIDWWWNTPLPVDADLLPEVVPDFKTPFRQCPPGVRPALADEELT 360
Query: 458 NLQRLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKK 517
L++ AR LP HF LGR+ +LQGLA A++KLWEKS IAK+A+K G+Q T E+M ++K+
Sbjct: 361 YLRKHARPLPTHFVLGRNTKLQGLAAAILKLWEKSLIAKVAVKVGIQNTNHEQMARNLKR 420
Query: 518 LTGGTLLSRNKDFLVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRASAFVLPSI 577
LTGGT++ RNKD+++ YRGK+FL V E++ ERE Q +EE+ARL+ + + +
Sbjct: 421 LTGGTVILRNKDYIIIYRGKDFLPGGVAESVIERESQVHDQQAKEEEARLKMADSLQMIV 480
Query: 578 ETIEKSGTAGTLKETLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAE-- 635
+ GT +E D + +R ++ N + E ++H +LEK+L E
Sbjct: 481 GLSSERSYVGTFREYQDFHDSHARRTTEN---NFRIQLEAKKH-----RLEKELKDQEWR 532
Query: 636 -----RKLLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRGV 690
+K+ R+ + L+K+ S P+++ D E +T+EER +FRK+GL+M +LLGRRGV
Sbjct: 533 LSMLTKKIERSNQVLAKLHSSWSPSKKDGDRELLTEEERRIFRKIGLKMDEHVLLGRRGV 592
Query: 691 FDGTVENMHLHWKYRELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVY 750
F+G +E +H HWK++E+VK+I K Q ++ LE E+GG L+++++ + +A+++Y
Sbjct: 593 FEGVIEEIHQHWKHKEVVKVITKQNQASQITYTSMMLEVETGGTLIAIERFTTSHAIILY 652
Query: 751 RGKDYQRPSTLRPKNLLTKRKALARSIELQRQEAL 785
RGK+Y+RP+ P NLLTKR+AL RSIE+QR+ ++
Sbjct: 653 RGKNYRRPTKSAPSNLLTKREALQRSIEVQRRGSM 687
>sp|Q9LF10|CRS1_ARATH Chloroplastic group IIA intron splicing facilitator CRS1,
chloroplastic OS=Arabidopsis thaliana GN=At5g16180 PE=2
SV=2
Length = 720
Score = 355 bits (911), Expect = 9e-97, Method: Compositional matrix adjust.
Identities = 221/568 (38%), Positives = 325/568 (57%), Gaps = 57/568 (10%)
Query: 223 KFPWEKRKEEVAEGRWLVKR--RSSRTSLAELTLPESELRRLRNLTFQTKSKTRIKGAGL 280
K PWE+ +E R++++R + S + AEL L E L RLR + + ++ AG+
Sbjct: 179 KMPWEREEE-----RFILRRMKKESVPTTAELILDEGLLNRLRREASKMRKWVNVRKAGV 233
Query: 281 TQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRMHEILERKTGGLVIWRSGTAVSLYRGVS 340
T+ VV+ I WK +E+ ++ + NM+R EI+E KTGGLV+ + +YRG
Sbjct: 234 TELVVNKIKSMWKLNELAMVRFDVPLCRNMERAQEIIEMKTGGLVVLSKKEFLVVYRG-- 291
Query: 341 YEVPSVQLNKRIYKRNELPASSVSQATDKQIHKQISMSVNLETASEEQETDFVREVKYED 400
S S+ D +IS S+ YE
Sbjct: 292 ------------------GPSYSSEGQD-----EISSSL------------------YER 310
Query: 401 EVEKLLDGLGPRYTDWPGCDPLPVDADMLPGIVPGYQPPFRVLPYGVRSTLARKEATNLQ 460
E ++LLDGLGPRY DW P PVDAD+LP +V GY P R P R+ L +E T L+
Sbjct: 311 EADRLLDGLGPRYMDWWMRRPFPVDADLLPEVVNGYMTPSRRCPPNTRAKLTDEELTYLR 370
Query: 461 RLARVLPPHFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTG 520
+A+ LP HF LGR+ LQGLA A++KLWEK IAKIA+K G T +E M ++++ LTG
Sbjct: 371 NIAQPLPFHFVLGRNYGLQGLASAIVKLWEKCIIAKIAIKWGALNTNNEEMADELRYLTG 430
Query: 521 GTLLSRNKDFLVFYRGKNFLSPDVTEALQERERLAKSLQDEEEQARLRASAF--VLPSIE 578
G L+ RNK +V YRGK+FLS +V + +++RERL Q EE R V+ + +
Sbjct: 431 GVLILRNKYLIVLYRGKDFLSDEVADLVEDRERLLSRYQHFEETKRESDIELLEVVTNGK 490
Query: 579 TIEKSGTAGTLKETLDANSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAERKL 638
++++ +GTL E + ++G + NL EAE R ++ E KL+ + K+
Sbjct: 491 QLKETNKSGTLLEFQELQRKFG----EMDPRNLETEAEKARLEKELKSQEHKLSILKSKI 546
Query: 639 LRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENM 698
++ L K+ KP+E D E +T+EER R++GL+M + L+LGRRGVF G +E +
Sbjct: 547 EKSNMELFKLNSLWKPSEGDDDIEILTNEERECLRRIGLKMNSSLVLGRRGVFFGVMEGL 606
Query: 699 HLHWKYRELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRP 758
H HWK+RE+ K+I K F + A ALE ES GVL+S++K+ +G+A+++YRGK+Y+RP
Sbjct: 607 HQHWKHREVAKVITMQKLFSRVVYTAKALETESNGVLISIEKLKEGHAILIYRGKNYKRP 666
Query: 759 ST-LRPKNLLTKRKALARSIELQRQEAL 785
S+ L +NLLTKRKAL RS+ +QR +L
Sbjct: 667 SSKLMAQNLLTKRKALQRSVVMQRLGSL 694
>sp|Q67XL4|Y3544_ARATH Uncharacterized CRM domain-containing protein At3g25440,
chloroplastic OS=Arabidopsis thaliana GN=At3g25440 PE=2
SV=1
Length = 444
Score = 115 bits (287), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 64/182 (35%), Positives = 111/182 (60%), Gaps = 6/182 (3%)
Query: 625 QKLEKKLARAERKLLRAERALSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLL 684
+K+ KL +A +K R + K+E S + AE DPE +T EE F + K+GL+ K ++
Sbjct: 139 EKILNKLRKARKKEERLMETMKKLEPS-ESAETTHDPEILTPEEHFYYLKMGLKCKNYVP 197
Query: 685 LGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKG 744
+GRRG++ G + NMHLHWK + +++++K T D+ K+IA+ L +GG+++ V +G
Sbjct: 198 VGRRGIYQGVILNMHLHWKKHQTLQVVIKTFTPDEVKEIAVELARLTGGIVLDV---HEG 254
Query: 745 YAMVVYRGKDYQRPST--LRPKNLLTKRKALARSIELQRQEALLKHVATLESNAGRLRSE 802
+++YRGK+Y +P T + P+ L ++KAL +S A+ K++ LE L+++
Sbjct: 255 NTIIMYRGKNYVQPPTEIMSPRITLPRKKALDKSKCRDALRAVRKYIPRLEQELQLLQAQ 314
Query: 803 IE 804
E
Sbjct: 315 AE 316
Score = 41.2 bits (95), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 57/113 (50%), Gaps = 5/113 (4%)
Query: 469 HFALGRSRQLQGLAVAMIKLWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGTLLSRNK 528
+ +GR QG+ + M W+K ++ +K E VE + +LTGG +L ++
Sbjct: 195 YVPVGRRGIYQGVILNMHLHWKKHQTLQVVIKTFTPDEVKEIAVE-LARLTGGIVLDVHE 253
Query: 529 -DFLVFYRGKNFLSPDVTEALQERERLA--KSLQDEEEQARLRASAFVLPSIE 578
+ ++ YRGKN++ P TE + R L K+L + + LRA +P +E
Sbjct: 254 GNTIIMYRGKNYVQPP-TEIMSPRITLPRKKALDKSKCRDALRAVRKYIPRLE 305
Score = 39.3 bits (90), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 48/99 (48%), Gaps = 2/99 (2%)
Query: 251 ELTLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNM 310
E+ PE L+ + + K+ + G+ Q V+ +H WK + +++ I+ +
Sbjct: 175 EILTPEEHFYYLK-MGLKCKNYVPVGRRGIYQGVILNMHLHWKKHQTLQVVIKTFTPDEV 233
Query: 311 KRMHEILERKTGGLVI-WRSGTAVSLYRGVSYEVPSVQL 348
K + L R TGG+V+ G + +YRG +Y P ++
Sbjct: 234 KEIAVELARLTGGIVLDVHEGNTIIMYRGKNYVQPPTEI 272
>sp|Q84N48|CAF2P_MAIZE CRS2-associated factor 2, chloroplastic OS=Zea mays GN=CAF2 PE=1
SV=1
Length = 611
Score = 64.7 bits (156), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 72/149 (48%), Gaps = 14/149 (9%)
Query: 201 RGGFSKESPLG--LGEEVGSDGEVKFPWEKRKEEVA-----EGRWLVKRRSSRTSLAELT 253
R G +PLG + V + G + E+RK ++A +GR SR +
Sbjct: 181 RRGVRLHTPLGQETPQTVSAHGIMMEVRERRKMDLARVSPGDGR-------SREEVLGEP 233
Query: 254 LPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRM 313
L SE+R L + I GLT ++++IH W+ EI +++ G P ++MK +
Sbjct: 234 LTPSEVRALVKPHISHNRQLNIGRDGLTHNMLEMIHCHWRRQEICKVRCRGVPTVDMKNL 293
Query: 314 HEILERKTGGLVIWRSGTAVSLYRGVSYE 342
LE K+GG VI R G V LYRG Y+
Sbjct: 294 CYHLEEKSGGKVIHRVGGVVFLYRGRHYD 322
Score = 43.5 bits (101), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 6/95 (6%)
Query: 662 ESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVK-VKTFDQA 720
E +T E K + L +GR G+ +E +H HW+ +E+ K+ + V T D
Sbjct: 232 EPLTPSEVRALVKPHISHNRQLNIGRDGLTHNMLEMIHCHWRRQEICKVRCRGVPTVDM- 290
Query: 721 KKIALALEAESGGVLVSVDKISKGYAMVVYRGKDY 755
K + LE +SGG ++ G + +YRG+ Y
Sbjct: 291 KNLCYHLEEKSGGKVIH----RVGGVVFLYRGRHY 321
Score = 34.7 bits (78), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 50/108 (46%), Gaps = 8/108 (7%)
Query: 661 PESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQA 720
P+ T EE R+ G + L + G++ V+++ ++ +LVKI +
Sbjct: 349 PDGFTKEEADEMRRKGRDLLPICKLAKNGIYITLVKDVRDAFEGSDLVKIDCEGLNPSDY 408
Query: 721 KKIALALEAESGGVLVSVDKISKGYAMVVYRGKD----YQRPSTLRPK 764
KKI L VL+S D ++++RGK+ Y +P TL PK
Sbjct: 409 KKIGAKLRDLVPCVLLSFDD----EQILMHRGKEWKSRYSKPLTLIPK 452
>sp|Q6Z4U2|CAF1M_ORYSJ CRS2-associated factor 1, mitochondrial OS=Oryza sativa subsp.
japonica GN=Os08g0174900 PE=2 SV=1
Length = 428
Score = 63.5 bits (153), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 44/74 (59%)
Query: 268 QTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRMHEILERKTGGLVIW 327
+TK + + GLT +++ IH WK E VR+K G P ++M+ + LE KTGGL+I
Sbjct: 173 RTKKQINLGRDGLTHNMLNDIHNHWKNDEAVRVKCLGVPTVDMQNVCHQLEDKTGGLIIH 232
Query: 328 RSGTAVSLYRGVSY 341
R G + LYRG Y
Sbjct: 233 RHGGQLILYRGRHY 246
Score = 43.5 bits (101), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 51/97 (52%), Gaps = 8/97 (8%)
Query: 662 ESITDEER-FMFRKL-GLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKI-IVKVKTFD 718
E +T ER F+ K R K + LGR G+ + ++H HWK E V++ + V T D
Sbjct: 155 EPLTPAERAFLVSKCQKSRTKKQINLGRDGLTHNMLNDIHNHWKNDEAVRVKCLGVPTVD 214
Query: 719 QAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDY 755
+ + LE ++GG+++ G +++YRG+ Y
Sbjct: 215 M-QNVCHQLEDKTGGLIIH----RHGGQLILYRGRHY 246
Score = 38.9 bits (89), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 49/111 (44%), Gaps = 4/111 (3%)
Query: 645 LSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKY 704
L K E + P + E +T EE RK GL + L + G + V + +
Sbjct: 258 LWKPAEPVYPRLIKTTIEGLTVEETKEMRKKGLYVPVLTKLAKNGYYASLVPMVRDAFLT 317
Query: 705 RELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDY 755
ELV+I K +KI + L ++VS DK ++V+RGKDY
Sbjct: 318 DELVRIDSKGLPKSDYRKIGVKLRDLVPCIIVSFDK----EQIIVWRGKDY 364
>sp|Q657G7|CAF2P_ORYSJ CRS2-associated factor 2, chloroplastic OS=Oryza sativa subsp.
japonica GN=Os01g0323300 PE=2 SV=1
Length = 607
Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 52/99 (52%), Gaps = 1/99 (1%)
Query: 243 RSSRTSLAELTLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKI 302
RS L E L +E+R L + I GLT ++++IH W+ EI +++
Sbjct: 220 RSREEVLGE-PLTAAEVRDLVKPHISHNRQLNIGRDGLTHNMLEMIHCHWRRQEICKVRC 278
Query: 303 EGAPALNMKRMHEILERKTGGLVIWRSGTAVSLYRGVSY 341
G P ++MK + LE K+GG VI R G V LYRG +Y
Sbjct: 279 RGVPTVDMKNLCYHLEEKSGGKVIHRVGGVVFLYRGRNY 317
Score = 43.9 bits (102), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 47/86 (54%), Gaps = 8/86 (9%)
Query: 683 LLLGRRGVFDGTVENMHLHWKYRELVKIIVK-VKTFDQAKKIALALEAESGGVLVSVDKI 741
L +GR G+ +E +H HW+ +E+ K+ + V T D K + LE +SGG ++
Sbjct: 249 LNIGRDGLTHNMLEMIHCHWRRQEICKVRCRGVPTVDM-KNLCYHLEEKSGGKVIH---- 303
Query: 742 SKGYAMVVYRGKDYQRPSTLRPKNLL 767
G + +YRG++Y P T RP+ L
Sbjct: 304 RVGGVVFLYRGRNYN-PRT-RPRYPL 327
Score = 37.4 bits (85), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 55/124 (44%), Gaps = 8/124 (6%)
Query: 645 LSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKY 704
L K + P Q PE +T EE R+ G + L + G++ V ++ ++
Sbjct: 329 LWKPATPVYPKLIQEAPEGLTKEEADEMRRRGKDLLPICKLAKNGIYIYLVRDVRDAFEG 388
Query: 705 RELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKD----YQRPST 760
+LVKI + KKI L VL+S D ++++RGK+ Y +P T
Sbjct: 389 SDLVKIDCEGLNPSDYKKIGAKLRDLVPCVLLSFD----NEQILMFRGKEWKSRYPKPLT 444
Query: 761 LRPK 764
L PK
Sbjct: 445 LIPK 448
>sp|Q0J7J7|CAF2M_ORYSJ CRS2-associated factor 2, mitochondrial OS=Oryza sativa subsp.
japonica GN=Os08g0188000 PE=2 SV=2
Length = 366
Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 61/125 (48%), Gaps = 2/125 (1%)
Query: 220 GEVKFPWEKRKEEVAEGRWLVKRRSSRTSLAELTLPESELRRL--RNLTFQTKSKTRIKG 277
G + PW+ A G +SR + L E E+ +L R + +
Sbjct: 111 GRLDRPWDGVAAAAARGEGAGAAATSREEVLGEPLAEEEVAQLVERYRHSDCSRQINLGK 170
Query: 278 AGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRMHEILERKTGGLVIWRSGTAVSLYR 337
G+T ++D IH WK +E VR+K G P L+M + LE KTGG VI+R+ + LYR
Sbjct: 171 GGVTHNMIDDIHNHWKRAEAVRIKCLGVPTLDMDNICFHLEDKTGGKVIYRNINILILYR 230
Query: 338 GVSYE 342
G +Y+
Sbjct: 231 GRNYD 235
Score = 42.0 bits (97), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 9/78 (11%)
Query: 685 LGRRGVFDGTVENMHLHWKYRELVKI-IVKVKTFDQAKKIALALEAESGGVLVSVDKISK 743
LG+ GV ++++H HWK E V+I + V T D I LE ++GG ++ +
Sbjct: 168 LGKGGVTHNMIDDIHNHWKRAEAVRIKCLGVPTLDM-DNICFHLEDKTGGKVIYRNI--- 223
Query: 744 GYAMVVYRGKDY---QRP 758
+++YRG++Y QRP
Sbjct: 224 -NILILYRGRNYDPKQRP 240
>sp|Q8VYD9|CAF1M_ARATH CRS2-associated factor 1, mitochondrial OS=Arabidopsis thaliana
GN=At4g31010 PE=2 SV=1
Length = 405
Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 58/104 (55%), Gaps = 2/104 (1%)
Query: 241 KRRSSRTSLAELTLPESELRRLRNLTFQTKSKTRIKGA--GLTQAVVDIIHEKWKTSEIV 298
KRR R + +L E+E + L L + K+K ++ GLT +++ ++ WK +E V
Sbjct: 146 KRRKVREKIQGASLTEAERKFLVELCQRNKTKRQVNLGRDGLTHNMLNDVYNHWKHAEAV 205
Query: 299 RLKIEGAPALNMKRMHEILERKTGGLVIWRSGTAVSLYRGVSYE 342
R+K G P L+MK + LE KT G V+ + + LYRG +Y+
Sbjct: 206 RVKCLGVPTLDMKNVIFHLEDKTFGQVVSKHSGTLVLYRGRNYD 249
Score = 42.4 bits (98), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 57/112 (50%), Gaps = 8/112 (7%)
Query: 647 KVEESLKPAERQADPESITDEERFMFRKLGLRMKAF--LLLGRRGVFDGTVENMHLHWKY 704
K+EE + + S+T+ ER +L R K + LGR G+ + +++ HWK+
Sbjct: 142 KLEEKRRKVREKIQGASLTEAERKFLVELCQRNKTKRQVNLGRDGLTHNMLNDVYNHWKH 201
Query: 705 RELVKI-IVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDY 755
E V++ + V T D K + LE ++ G +VS +V+YRG++Y
Sbjct: 202 AEAVRVKCLGVPTLDM-KNVIFHLEDKTFGQVVS----KHSGTLVLYRGRNY 248
Score = 37.4 bits (85), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 50/114 (43%), Gaps = 4/114 (3%)
Query: 645 LSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKY 704
L K E + P + + ++ +E RK GL + A L + G + V + +
Sbjct: 260 LWKPHEPVYPRLIKTTIDGLSIDETKAMRKKGLAVPALTKLAKNGYYGSLVPMVRDAFLV 319
Query: 705 RELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRP 758
ELV+I KKI L +LV+ DK +V++RGKDY+ P
Sbjct: 320 SELVRIDCLGLERKDYKKIGAKLRDLVPCILVTFDK----EQVVIWRGKDYKPP 369
>sp|Q9FFU1|CAF2M_ARATH CRS2-associated factor 2, mitochondrial OS=Arabidopsis thaliana
GN=At5g54890 PE=2 SV=1
Length = 358
Score = 59.3 bits (142), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 41/65 (63%)
Query: 278 AGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRMHEILERKTGGLVIWRSGTAVSLYR 337
G+T ++D IH WK +E VR+K G P L+M + LE K+GG +++R+ + LYR
Sbjct: 169 GGVTHNMIDDIHNHWKKAEAVRIKCLGVPTLDMDNICFHLEEKSGGKIVYRNINILVLYR 228
Query: 338 GVSYE 342
G +Y+
Sbjct: 229 GRNYD 233
Score = 42.4 bits (98), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 6/72 (8%)
Query: 685 LGRRGVFDGTVENMHLHWKYRELVKI-IVKVKTFDQAKKIALALEAESGGVLVSVDKISK 743
LG+ GV ++++H HWK E V+I + V T D I LE +SGG +V
Sbjct: 166 LGKGGVTHNMIDDIHNHWKKAEAVRIKCLGVPTLDM-DNICFHLEEKSGGKIVY----RN 220
Query: 744 GYAMVVYRGKDY 755
+V+YRG++Y
Sbjct: 221 INILVLYRGRNY 232
>sp|Q9LDA9|CAF2P_ARATH CRS2-associated factor 2, chloroplastic OS=Arabidopsis thaliana
GN=At1g23400 PE=2 SV=1
Length = 564
Score = 58.5 bits (140), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 39/63 (61%)
Query: 279 GLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRMHEILERKTGGLVIWRSGTAVSLYRG 338
G T ++++IH WK + +++ +G P ++M + +LE KTGG +I R G V L+RG
Sbjct: 228 GFTHNMLELIHSHWKRRRVCKVRCKGVPTVDMNNVCRVLEEKTGGEIIHRVGGVVYLFRG 287
Query: 339 VSY 341
+Y
Sbjct: 288 RNY 290
Score = 38.9 bits (89), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 6/73 (8%)
Query: 685 LGRRGVFDGTVENMHLHWKYRELVKIIVK-VKTFDQAKKIALALEAESGGVLVSVDKISK 743
LGR G +E +H HWK R + K+ K V T D + LE ++GG ++
Sbjct: 224 LGRDGFTHNMLELIHSHWKRRRVCKVRCKGVPTVDM-NNVCRVLEEKTGGEIIH----RV 278
Query: 744 GYAMVVYRGKDYQ 756
G + ++RG++Y
Sbjct: 279 GGVVYLFRGRNYN 291
Score = 36.2 bits (82), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 51/112 (45%), Gaps = 4/112 (3%)
Query: 645 LSKVEESLKPAERQADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKY 704
L K + P Q PE +T EE FR G ++ L + GV+ V+++ ++
Sbjct: 302 LWKPAAPVYPKLIQEVPEGLTKEEAHEFRVKGKSLRPICKLSKNGVYVSLVKDVRDAFEL 361
Query: 705 RELVKIIVKVKTFDQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQ 756
LVK+ KKI L+ VL+S D ++++RG++++
Sbjct: 362 SSLVKVDCPGLEPSDYKKIGAKLKELVPCVLLSFDD----EQILMWRGREWK 409
>sp|Q9SL79|CAF1P_ARATH CRS2-associated factor 1, chloroplastic OS=Arabidopsis thaliana
GN=At2g20020 PE=1 SV=2
Length = 701
Score = 57.8 bits (138), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 49/88 (55%)
Query: 254 LPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEGAPALNMKRM 313
L + E+R L +T + + GLT +++ IH+ WK + ++K +G ++M +
Sbjct: 243 LTKEEVRELVTSCLKTTRQLNMGRDGLTHNMLNNIHDLWKRRRVCKIKCKGVCTVDMDNV 302
Query: 314 HEILERKTGGLVIWRSGTAVSLYRGVSY 341
E LE K GG VI+R G + L+RG +Y
Sbjct: 303 CEQLEEKIGGKVIYRRGGVLFLFRGRNY 330
Score = 39.7 bits (91), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 63/142 (44%), Gaps = 13/142 (9%)
Query: 662 ESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVK-VKTFDQA 720
E +T EE L+ L +GR G+ + N+H WK R + KI K V T D
Sbjct: 241 EPLTKEEVRELVTSCLKTTRQLNMGRDGLTHNMLNNIHDLWKRRRVCKIKCKGVCTVDM- 299
Query: 721 KKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPKNLLTKRKALA----RS 776
+ LE + GG ++ +G + ++RG++Y RP+ L K +A R
Sbjct: 300 DNVCEQLEEKIGGKVI----YRRGGVLFLFRGRNYNH--RTRPRFPLMLWKPVAPVYPRL 353
Query: 777 IELQRQEALLKHVATLESNAGR 798
I+ Q E L + AT GR
Sbjct: 354 IQ-QVPEGLTRQEATNMRRKGR 374
Score = 38.1 bits (87), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 49/99 (49%), Gaps = 4/99 (4%)
Query: 658 QADPESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTF 717
Q PE +T +E R+ G + LG+ GV+ V+N+ ++ ELV+I +
Sbjct: 355 QQVPEGLTRQEATNMRRKGRELMPICKLGKNGVYCDLVKNVKEAFEVCELVRIDCQGMKG 414
Query: 718 DQAKKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQ 756
+KI L+ VLVS + ++++RG++++
Sbjct: 415 SDFRKIGAKLKDLVPCVLVSFE----NEQILIWRGREWK 449
Score = 35.0 bits (79), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 9/77 (11%)
Query: 471 ALGRSRQLQ----GLAVAMIK----LWEKSSIAKIALKRGVQLTTSERMVEDIKKLTGGT 522
L +RQL GL M+ LW++ + KI K GV + + E +++ GG
Sbjct: 255 CLKTTRQLNMGRDGLTHNMLNNIHDLWKRRRVCKIKCK-GVCTVDMDNVCEQLEEKIGGK 313
Query: 523 LLSRNKDFLVFYRGKNF 539
++ R L +RG+N+
Sbjct: 314 VIYRRGGVLFLFRGRNY 330
>sp|Q5VMQ5|CAF1P_ORYSJ CRS2-associated factor 1, chloroplastic OS=Oryza sativa subsp.
japonica GN=Os01g0495900 PE=2 SV=1
Length = 701
Score = 57.8 bits (138), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 51/98 (52%)
Query: 244 SSRTSLAELTLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIE 303
+SR + L + E+ L T +TK + I GLT +++ IH WK + ++K +
Sbjct: 175 ASREEVLGEPLTKEEVDELVKATLKTKRQLNIGRDGLTHNMLENIHSHWKRKRVCKIKCK 234
Query: 304 GAPALNMKRMHEILERKTGGLVIWRSGTAVSLYRGVSY 341
G ++M + + LE K GG VI G + L+RG +Y
Sbjct: 235 GVCTVDMDNVCQQLEEKVGGKVIHHQGGVIFLFRGRNY 272
Score = 48.1 bits (113), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 49/95 (51%), Gaps = 6/95 (6%)
Query: 662 ESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVK-VKTFDQA 720
E +T EE K L+ K L +GR G+ +EN+H HWK + + KI K V T D
Sbjct: 183 EPLTKEEVDELVKATLKTKRQLNIGRDGLTHNMLENIHSHWKRKRVCKIKCKGVCTVDM- 241
Query: 721 KKIALALEAESGGVLVSVDKISKGYAMVVYRGKDY 755
+ LE + GG ++ +G + ++RG++Y
Sbjct: 242 DNVCQQLEEKVGGKVIH----HQGGVIFLFRGRNY 272
>sp|Q84N49|CAF1P_MAIZE CRS2-associated factor 1, chloroplastic OS=Zea mays GN=CAF1 PE=1
SV=1
Length = 674
Score = 54.7 bits (130), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 50/97 (51%)
Query: 245 SRTSLAELTLPESELRRLRNLTFQTKSKTRIKGAGLTQAVVDIIHEKWKTSEIVRLKIEG 304
SR + L + E+ L + ++K + + GLT +++ IH WK + ++K +G
Sbjct: 176 SREDILGEPLTKEEVSELVKGSLKSKRQLNMGRDGLTHNMLENIHSHWKRKRVCKIKCKG 235
Query: 305 APALNMKRMHEILERKTGGLVIWRSGTAVSLYRGVSY 341
++M + LE K GG VI R G + L+RG +Y
Sbjct: 236 VCTIDMDNICHQLEEKVGGKVIHRQGGVIFLFRGRNY 272
Score = 48.5 bits (114), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 6/95 (6%)
Query: 662 ESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVK-VKTFDQA 720
E +T EE K L+ K L +GR G+ +EN+H HWK + + KI K V T D
Sbjct: 183 EPLTKEEVSELVKGSLKSKRQLNMGRDGLTHNMLENIHSHWKRKRVCKIKCKGVCTIDM- 241
Query: 721 KKIALALEAESGGVLVSVDKISKGYAMVVYRGKDY 755
I LE + GG ++ +G + ++RG++Y
Sbjct: 242 DNICHQLEEKVGGKVIH----RQGGVIFLFRGRNY 272
Score = 34.3 bits (77), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 51/255 (20%), Positives = 101/255 (39%), Gaps = 46/255 (18%)
Query: 661 PESITDEERFMFRKLGLRMKAFLLLGRRGVFDGTVENMHLHWKYRELVKIIVKVKTFDQA 720
P +T +E R G ++ LG+ GV+ V + ++ +LV++
Sbjct: 300 PGGLTPDEATEMRTRGHQLPPICKLGKNGVYANLVNQVREAFEACDLVRVDCSGLNKSDC 359
Query: 721 KKIALALEAESGGVLVSVDKISKGYAMVVYRGKDYQRPSTLRPKNLLTKRKALARSIELQ 780
+KI L+ +L+S + ++++RG D++ S+L P L S E+
Sbjct: 360 RKIGAKLKDLVPCILLSFE----FEHILMWRGSDWK--SSLPP---------LENSYEVT 404
Query: 781 RQEALLKHVATLESNAGRLRSEIEQMNSVKGTGDEQLYDKLDSAYATEDDDSEDEGDEAY 840
+ + ES +G+ E V +G+ +L SA + + + DEG E +
Sbjct: 405 KVQ---------ESFSGK-----ESNEKVTHSGNVLAQIELVSAATSHKNWNLDEGQEKF 450
Query: 841 LEMYAGGNDNEDEIDNSTHNL------------EMESDFPYHAQDQESETELMDSESEAY 888
+ + + D + NS ++ E +D P ++MD
Sbjct: 451 KD-----STDSDMVLNSAKDVPALFHSTGISRTEPSADIPLEYSPLNPVCDIMDPSLNCR 505
Query: 889 TVHSTYCASTDIVEE 903
++ + C S +VE+
Sbjct: 506 SIPTNNCESRALVEK 520
>sp|Q3IJ53|IF2_PSEHT Translation initiation factor IF-2 OS=Pseudoalteromonas
haloplanktis (strain TAC 125) GN=infB PE=3 SV=1
Length = 886
Score = 33.5 bits (75), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 83/185 (44%), Gaps = 12/185 (6%)
Query: 487 KLWEKSSIAKIALKRGVQLTTSER--MVEDIKKLTGGT--------LLSRNKDFLVFYRG 536
KL ++ S A I + G +T +E+ +++ + K GGT L R + G
Sbjct: 19 KLLQQFSQAGITKQAGESVTEAEKATLLDHLSKQHGGTGSDGPARMTLQRKSKSTLSVTG 78
Query: 537 KNFLSPDVTEALQERERLAKSLQDEEEQARLRASAFVLPSIETIEKSGT-AGTLKETLDA 595
+ V +++ K E+EQ LR +A +E +K+ A LK +A
Sbjct: 79 STGKAKSVQVEVRKTRTYVKKSAMEQEQEELRLAAEEKLRLEEQQKAAQEAAELKAKQEA 138
Query: 596 NSRWGKRLDDSHKENLVREAEVRRHAYLVQKLEKKLARAERKLLRAERALSKVEE-SLKP 654
+ + D KE R+A+ R A Q ++ A++E+ + AER + EE +LK
Sbjct: 139 ERKAKEDADRKAKEEAKRKADAERKAKQKQMTPEQSAKSEKDRIEAERLQKEAEEAALKK 198
Query: 655 AERQA 659
AE +A
Sbjct: 199 AEEEA 203
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.132 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 345,556,177
Number of Sequences: 539616
Number of extensions: 15907668
Number of successful extensions: 51045
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 317
Number of HSP's that attempted gapping in prelim test: 49772
Number of HSP's gapped (non-prelim): 1416
length of query: 908
length of database: 191,569,459
effective HSP length: 127
effective length of query: 781
effective length of database: 123,038,227
effective search space: 96092855287
effective search space used: 96092855287
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 66 (30.0 bits)