Query 002559
Match_columns 908
No_of_seqs 383 out of 3037
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 02:25:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002559.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002559hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 7.4E-56 1.6E-60 540.3 39.6 553 13-606 12-617 (889)
2 PLN03210 Resistant to P. syrin 100.0 4.2E-42 9.2E-47 439.4 27.9 389 55-501 100-505 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 7.8E-38 1.7E-42 342.7 14.8 269 164-458 2-281 (287)
4 PRK04841 transcriptional regul 99.5 4.9E-12 1.1E-16 160.5 26.5 279 173-498 25-332 (903)
5 COG2909 MalT ATP-dependent tra 99.2 1.8E-09 3.9E-14 127.8 26.5 287 170-501 27-341 (894)
6 PRK00411 cdc6 cell division co 98.9 2E-07 4.4E-12 107.1 24.8 283 156-478 28-358 (394)
7 TIGR00635 ruvB Holliday juncti 98.9 1.7E-08 3.6E-13 112.0 13.6 270 159-478 5-289 (305)
8 TIGR02928 orc1/cdc6 family rep 98.8 7.8E-07 1.7E-11 101.2 26.1 285 157-478 14-350 (365)
9 TIGR03015 pepcterm_ATPase puta 98.8 3.3E-07 7.2E-12 99.6 21.5 173 179-372 42-242 (269)
10 PRK00080 ruvB Holliday junctio 98.8 2.9E-08 6.2E-13 111.3 13.2 272 158-479 25-311 (328)
11 PF05729 NACHT: NACHT domain 98.7 1.1E-07 2.4E-12 94.7 10.1 136 181-336 1-163 (166)
12 PF01637 Arch_ATPase: Archaeal 98.6 1E-07 2.2E-12 100.4 8.6 195 161-367 2-233 (234)
13 COG2256 MGS1 ATPase related to 98.5 2.1E-06 4.5E-11 94.8 14.0 158 166-363 35-207 (436)
14 COG3903 Predicted ATPase [Gene 98.4 8.1E-07 1.7E-11 98.7 10.1 290 179-501 13-317 (414)
15 PRK13342 recombination factor 98.3 6.3E-06 1.4E-10 95.4 15.0 171 159-370 13-198 (413)
16 PRK06893 DNA replication initi 98.3 3.6E-06 7.7E-11 89.5 11.1 144 180-369 39-204 (229)
17 COG3899 Predicted ATPase [Gene 98.2 3.5E-05 7.5E-10 96.4 19.4 309 160-501 2-389 (849)
18 PF13173 AAA_14: AAA domain 98.1 1.3E-05 2.9E-10 77.0 10.0 98 180-313 2-102 (128)
19 PF13401 AAA_22: AAA domain; P 98.1 6.8E-06 1.5E-10 78.8 7.7 113 180-309 4-125 (131)
20 PTZ00112 origin recognition co 98.1 0.00046 1E-08 83.5 24.1 165 158-338 755-951 (1164)
21 PRK12402 replication factor C 98.1 7.2E-05 1.6E-09 84.0 15.7 191 159-365 16-223 (337)
22 PRK07003 DNA polymerase III su 98.0 0.00018 3.9E-09 86.5 19.2 183 158-367 16-220 (830)
23 PRK13341 recombination factor 98.0 3.9E-05 8.4E-10 93.9 13.8 162 159-361 29-210 (725)
24 TIGR03420 DnaA_homol_Hda DnaA 98.0 6.3E-05 1.4E-09 79.5 12.6 158 165-369 24-202 (226)
25 PRK09087 hypothetical protein; 98.0 0.00012 2.6E-09 77.6 14.2 136 180-370 44-197 (226)
26 cd00009 AAA The AAA+ (ATPases 97.9 9.3E-05 2E-09 71.2 11.8 42 163-205 3-44 (151)
27 PRK12323 DNA polymerase III su 97.9 0.00018 3.8E-09 85.6 15.7 189 158-366 16-223 (700)
28 PLN03025 replication factor C 97.9 0.00019 4.1E-09 80.3 15.3 169 159-362 14-194 (319)
29 PF05496 RuvB_N: Holliday junc 97.9 0.00014 3E-09 75.7 12.8 52 158-209 24-79 (233)
30 PRK14949 DNA polymerase III su 97.9 0.00029 6.4E-09 86.3 17.4 183 158-367 16-220 (944)
31 PRK04195 replication factor C 97.9 0.00016 3.5E-09 85.4 14.5 170 158-366 14-200 (482)
32 KOG2028 ATPase related to the 97.9 0.00024 5.2E-09 77.4 14.1 134 166-335 149-293 (554)
33 PRK14961 DNA polymerase III su 97.9 0.0003 6.5E-09 80.1 15.9 180 158-364 16-216 (363)
34 PRK14963 DNA polymerase III su 97.8 0.00019 4.1E-09 84.8 14.5 181 158-363 14-212 (504)
35 PRK08727 hypothetical protein; 97.8 0.00035 7.6E-09 74.5 15.2 138 180-363 41-199 (233)
36 PRK08084 DNA replication initi 97.8 0.00019 4.1E-09 76.7 13.0 153 167-366 33-207 (235)
37 PRK14956 DNA polymerase III su 97.8 0.00017 3.7E-09 83.5 13.0 185 158-363 18-217 (484)
38 PRK06645 DNA polymerase III su 97.8 0.00031 6.8E-09 82.7 14.9 185 159-363 22-224 (507)
39 PRK05564 DNA polymerase III su 97.8 0.00047 1E-08 76.9 15.5 168 159-366 5-188 (313)
40 PRK14960 DNA polymerase III su 97.8 0.00061 1.3E-08 81.3 16.8 183 158-364 15-215 (702)
41 PRK14957 DNA polymerase III su 97.7 0.00043 9.3E-09 82.1 15.3 176 158-362 16-214 (546)
42 PF00308 Bac_DnaA: Bacterial d 97.7 0.00056 1.2E-08 72.2 14.7 159 168-362 21-202 (219)
43 PRK07994 DNA polymerase III su 97.7 0.00052 1.1E-08 82.7 16.0 184 158-365 16-217 (647)
44 PRK08691 DNA polymerase III su 97.7 0.00032 6.9E-09 84.3 13.7 181 158-365 16-217 (709)
45 PF13191 AAA_16: AAA ATPase do 97.7 9.4E-05 2E-09 75.2 7.1 48 160-207 2-51 (185)
46 PRK00440 rfc replication facto 97.6 0.0011 2.3E-08 73.9 15.6 170 159-364 18-199 (319)
47 TIGR01242 26Sp45 26S proteasom 97.6 0.00062 1.4E-08 77.6 13.9 51 158-208 122-184 (364)
48 PRK14088 dnaA chromosomal repl 97.6 0.00094 2E-08 77.9 15.5 148 180-362 130-299 (440)
49 TIGR00678 holB DNA polymerase 97.6 0.0017 3.8E-08 66.6 15.5 81 274-363 95-186 (188)
50 PRK14962 DNA polymerase III su 97.6 0.00081 1.7E-08 78.9 14.4 185 158-370 14-221 (472)
51 PRK14955 DNA polymerase III su 97.6 0.0011 2.4E-08 76.5 15.3 189 158-363 16-223 (397)
52 TIGR02397 dnaX_nterm DNA polym 97.6 0.0014 3.1E-08 74.2 15.8 182 158-368 14-218 (355)
53 PRK09112 DNA polymerase III su 97.6 0.0012 2.6E-08 74.5 14.8 190 158-368 23-240 (351)
54 TIGR02903 spore_lon_C ATP-depe 97.6 0.019 4.2E-07 69.8 26.1 105 264-371 281-398 (615)
55 PRK14951 DNA polymerase III su 97.5 0.00098 2.1E-08 80.1 14.7 183 158-363 16-220 (618)
56 COG1474 CDC6 Cdc6-related prot 97.5 0.016 3.5E-07 65.8 23.8 111 160-287 19-135 (366)
57 PF14516 AAA_35: AAA-like doma 97.5 0.016 3.5E-07 65.1 23.7 198 161-374 14-245 (331)
58 PRK14964 DNA polymerase III su 97.5 0.0011 2.3E-08 77.7 14.6 179 158-363 13-212 (491)
59 PRK14958 DNA polymerase III su 97.5 0.0018 3.8E-08 76.8 16.3 48 158-205 16-63 (509)
60 PRK05642 DNA replication initi 97.5 0.00064 1.4E-08 72.6 11.5 26 180-205 45-70 (234)
61 PHA02544 44 clamp loader, smal 97.5 0.0019 4.1E-08 72.0 15.3 48 158-205 21-68 (316)
62 PRK14969 DNA polymerase III su 97.5 0.0016 3.4E-08 77.6 15.2 176 158-363 16-215 (527)
63 PTZ00202 tuzin; Provisional 97.5 0.0013 2.8E-08 74.5 13.4 52 154-205 258-311 (550)
64 PRK05896 DNA polymerase III su 97.5 0.0028 6E-08 75.6 16.7 184 158-363 16-215 (605)
65 PRK07764 DNA polymerase III su 97.4 0.0025 5.3E-08 79.3 16.8 177 158-363 15-216 (824)
66 PRK14970 DNA polymerase III su 97.4 0.0023 5E-08 73.0 15.4 165 158-363 17-204 (367)
67 smart00382 AAA ATPases associa 97.4 0.0015 3.2E-08 62.0 11.7 37 181-218 3-39 (148)
68 PRK09111 DNA polymerase III su 97.4 0.0025 5.4E-08 76.8 15.8 192 158-365 24-230 (598)
69 PRK00149 dnaA chromosomal repl 97.4 0.0021 4.5E-08 75.5 15.0 148 180-363 148-317 (450)
70 PRK07940 DNA polymerase III su 97.4 0.0036 7.8E-08 71.8 16.2 175 159-368 6-213 (394)
71 PRK07471 DNA polymerase III su 97.4 0.0021 4.6E-08 72.9 14.1 190 158-368 19-238 (365)
72 PRK06620 hypothetical protein; 97.4 0.0017 3.6E-08 68.4 12.2 24 181-204 45-68 (214)
73 TIGR02639 ClpA ATP-dependent C 97.3 0.002 4.2E-08 80.1 14.3 47 158-205 182-228 (731)
74 TIGR00362 DnaA chromosomal rep 97.3 0.0036 7.8E-08 72.5 15.5 148 180-363 136-305 (405)
75 PRK14950 DNA polymerase III su 97.3 0.0053 1.1E-07 74.3 17.2 189 158-368 16-221 (585)
76 PRK08903 DnaA regulatory inact 97.3 0.0042 9.1E-08 65.8 14.6 40 165-204 27-66 (227)
77 PRK14952 DNA polymerase III su 97.3 0.0044 9.5E-08 74.3 16.0 180 158-363 13-214 (584)
78 PRK14954 DNA polymerase III su 97.3 0.0044 9.6E-08 74.8 16.1 188 158-363 16-223 (620)
79 PF05621 TniB: Bacterial TniB 97.3 0.0093 2E-07 65.1 16.8 186 165-363 44-256 (302)
80 PRK06305 DNA polymerase III su 97.3 0.0042 9E-08 72.7 15.1 178 158-363 17-217 (451)
81 PRK08116 hypothetical protein; 97.2 0.001 2.2E-08 72.4 9.1 27 181-207 115-141 (268)
82 PRK14959 DNA polymerase III su 97.2 0.0055 1.2E-07 73.5 15.8 186 159-372 17-225 (624)
83 PRK08451 DNA polymerase III su 97.2 0.0073 1.6E-07 71.5 16.6 183 158-366 14-216 (535)
84 PRK14087 dnaA chromosomal repl 97.2 0.0044 9.5E-08 72.5 14.7 160 180-371 141-322 (450)
85 PF07693 KAP_NTPase: KAP famil 97.2 0.0078 1.7E-07 67.2 16.2 77 166-247 4-82 (325)
86 TIGR03345 VI_ClpV1 type VI sec 97.2 0.0038 8.3E-08 78.4 14.9 173 158-362 187-390 (852)
87 PRK07133 DNA polymerase III su 97.2 0.0063 1.4E-07 74.0 15.9 185 158-367 18-219 (725)
88 PRK14953 DNA polymerase III su 97.1 0.0087 1.9E-07 70.6 16.1 177 159-366 17-218 (486)
89 PRK03992 proteasome-activating 97.1 0.004 8.7E-08 71.6 13.1 50 158-207 131-192 (389)
90 KOG2004 Mitochondrial ATP-depe 97.1 0.0091 2E-07 70.7 15.7 53 157-209 410-467 (906)
91 KOG0989 Replication factor C, 97.1 0.0029 6.4E-08 68.1 10.8 168 161-360 39-222 (346)
92 cd01128 rho_factor Transcripti 97.1 0.00046 9.9E-09 74.1 4.8 30 180-209 16-46 (249)
93 PRK14971 DNA polymerase III su 97.1 0.0057 1.2E-07 74.1 14.3 180 158-363 17-217 (614)
94 PTZ00454 26S protease regulato 97.1 0.0096 2.1E-07 68.5 15.5 49 160-208 147-207 (398)
95 KOG2543 Origin recognition com 97.1 0.0039 8.4E-08 69.0 11.2 51 158-208 6-58 (438)
96 CHL00095 clpC Clp protease ATP 97.0 0.0054 1.2E-07 77.2 13.8 47 158-205 179-225 (821)
97 PRK05707 DNA polymerase III su 97.0 0.023 5E-07 63.7 17.1 88 274-368 105-203 (328)
98 PRK14948 DNA polymerase III su 96.9 0.019 4E-07 69.8 16.8 189 159-366 17-220 (620)
99 PF00004 AAA: ATPase family as 96.9 0.0012 2.6E-08 62.9 5.4 24 183-206 1-24 (132)
100 PRK09376 rho transcription ter 96.9 0.00067 1.5E-08 76.3 4.1 31 180-210 169-200 (416)
101 PRK14086 dnaA chromosomal repl 96.9 0.0078 1.7E-07 71.9 13.0 26 181-206 315-340 (617)
102 PRK14965 DNA polymerase III su 96.9 0.024 5.2E-07 68.5 17.5 180 158-368 16-221 (576)
103 PTZ00361 26 proteosome regulat 96.9 0.0071 1.5E-07 70.1 12.1 48 161-208 186-245 (438)
104 TIGR03346 chaperone_ClpB ATP-d 96.9 0.0094 2E-07 75.3 14.1 48 158-206 173-220 (852)
105 PRK06647 DNA polymerase III su 96.9 0.021 4.5E-07 68.6 16.1 180 158-364 16-216 (563)
106 PRK12422 chromosomal replicati 96.8 0.015 3.2E-07 68.0 14.2 26 180-205 141-166 (445)
107 PRK10865 protein disaggregatio 96.8 0.01 2.2E-07 74.9 13.8 47 158-205 178-224 (857)
108 COG1373 Predicted ATPase (AAA+ 96.8 0.013 2.8E-07 67.6 13.5 158 166-368 22-192 (398)
109 PRK11034 clpA ATP-dependent Cl 96.8 0.017 3.7E-07 71.4 15.0 46 158-204 186-231 (758)
110 TIGR00763 lon ATP-dependent pr 96.8 0.067 1.5E-06 67.1 20.5 51 158-208 320-375 (775)
111 TIGR03689 pup_AAA proteasome A 96.8 0.012 2.5E-07 69.4 12.9 47 161-207 185-243 (512)
112 cd01131 PilT Pilus retraction 96.8 0.0029 6.2E-08 65.8 7.1 111 181-313 2-112 (198)
113 PRK10865 protein disaggregatio 96.7 0.63 1.4E-05 59.0 28.5 46 160-205 570-623 (857)
114 PF05673 DUF815: Protein of un 96.7 0.039 8.3E-07 58.6 14.5 53 154-206 23-78 (249)
115 PRK05563 DNA polymerase III su 96.7 0.05 1.1E-06 65.5 17.4 177 158-363 16-215 (559)
116 TIGR01241 FtsH_fam ATP-depende 96.7 0.025 5.4E-07 67.3 14.8 28 180-207 88-115 (495)
117 PF01695 IstB_IS21: IstB-like 96.7 0.0014 3E-08 66.9 3.6 26 180-205 47-72 (178)
118 PRK06921 hypothetical protein; 96.7 0.0034 7.3E-08 68.3 6.7 28 180-207 117-144 (266)
119 CHL00181 cbbX CbbX; Provisiona 96.6 0.03 6.5E-07 61.6 14.0 24 181-204 60-83 (287)
120 PRK10536 hypothetical protein; 96.6 0.031 6.7E-07 59.9 13.3 136 162-310 59-213 (262)
121 PRK08181 transposase; Validate 96.6 0.0035 7.6E-08 68.1 6.3 25 181-205 107-131 (269)
122 CHL00176 ftsH cell division pr 96.6 0.024 5.1E-07 69.0 13.7 47 159-205 184-241 (638)
123 COG2255 RuvB Holliday junction 96.5 0.05 1.1E-06 58.4 13.9 51 158-208 26-80 (332)
124 TIGR00767 rho transcription te 96.5 0.0073 1.6E-07 68.5 8.2 33 180-212 168-201 (415)
125 PF10443 RNA12: RNA12 protein; 96.5 0.44 9.5E-06 54.5 22.2 205 163-378 1-288 (431)
126 TIGR03346 chaperone_ClpB ATP-d 96.5 1.2 2.6E-05 56.7 28.8 47 159-205 566-620 (852)
127 COG0593 DnaA ATPase involved i 96.5 0.035 7.6E-07 63.3 13.6 128 180-341 113-262 (408)
128 COG0542 clpA ATP-binding subun 96.5 0.098 2.1E-06 64.0 18.1 115 159-298 492-618 (786)
129 TIGR02881 spore_V_K stage V sp 96.5 0.024 5.2E-07 61.5 11.8 25 180-204 42-66 (261)
130 COG1222 RPT1 ATP-dependent 26S 96.4 0.039 8.5E-07 60.9 13.1 171 162-373 155-372 (406)
131 TIGR02880 cbbX_cfxQ probable R 96.4 0.034 7.4E-07 61.1 12.5 23 182-204 60-82 (284)
132 PRK07261 topology modulation p 96.3 0.0097 2.1E-07 60.3 7.3 24 182-205 2-25 (171)
133 TIGR00602 rad24 checkpoint pro 96.3 0.037 8.1E-07 67.0 13.3 48 158-205 84-135 (637)
134 PRK06835 DNA replication prote 96.3 0.0095 2.1E-07 66.7 7.7 27 180-206 183-209 (329)
135 PRK06526 transposase; Provisio 96.3 0.01 2.2E-07 64.1 7.7 26 180-205 98-123 (254)
136 PRK12377 putative replication 96.3 0.011 2.4E-07 63.5 7.9 28 180-207 101-128 (248)
137 cd01393 recA_like RecA is a b 96.3 0.034 7.5E-07 58.6 11.5 49 169-217 7-61 (226)
138 PF04665 Pox_A32: Poxvirus A32 96.3 0.011 2.5E-07 62.7 7.7 33 181-214 14-46 (241)
139 cd01120 RecA-like_NTPases RecA 96.3 0.013 2.9E-07 57.6 7.8 35 182-217 1-35 (165)
140 PRK09183 transposase/IS protei 96.2 0.011 2.4E-07 64.0 7.5 25 180-204 102-126 (259)
141 COG0466 Lon ATP-dependent Lon 96.2 0.064 1.4E-06 64.1 14.1 53 157-209 322-379 (782)
142 PF13207 AAA_17: AAA domain; P 96.2 0.0039 8.5E-08 58.8 3.4 23 182-204 1-23 (121)
143 PRK07399 DNA polymerase III su 96.2 0.11 2.3E-06 58.0 15.2 192 159-367 5-220 (314)
144 COG1484 DnaC DNA replication p 96.2 0.0078 1.7E-07 65.0 5.9 27 179-205 104-130 (254)
145 PRK06762 hypothetical protein; 96.2 0.081 1.7E-06 53.0 13.0 25 180-204 2-26 (166)
146 PRK10787 DNA-binding ATP-depen 96.1 0.2 4.4E-06 62.6 18.7 51 158-208 322-377 (784)
147 PHA00729 NTP-binding motif con 96.1 0.013 2.8E-07 61.7 6.9 26 179-204 16-41 (226)
148 PRK09361 radB DNA repair and r 96.1 0.021 4.5E-07 60.4 8.5 49 169-218 11-60 (225)
149 PRK08118 topology modulation p 96.0 0.013 2.8E-07 59.1 6.6 25 181-205 2-26 (167)
150 CHL00095 clpC Clp protease ATP 96.0 0.28 6.1E-06 62.0 19.6 48 158-205 509-564 (821)
151 TIGR02639 ClpA ATP-dependent C 96.0 0.036 7.8E-07 69.1 11.3 26 180-205 484-509 (731)
152 TIGR02858 spore_III_AA stage I 95.8 0.1 2.2E-06 56.9 12.8 134 166-314 98-233 (270)
153 PRK08769 DNA polymerase III su 95.8 0.12 2.6E-06 57.7 13.5 87 274-369 112-209 (319)
154 PRK08058 DNA polymerase III su 95.8 0.19 4.1E-06 56.6 15.0 42 163-204 11-52 (329)
155 PRK06067 flagellar accessory p 95.7 0.051 1.1E-06 57.8 9.9 47 169-217 13-61 (234)
156 COG1121 ZnuC ABC-type Mn/Zn tr 95.7 0.17 3.6E-06 54.3 13.4 135 180-315 30-204 (254)
157 PRK05541 adenylylsulfate kinas 95.7 0.028 6.1E-07 57.0 7.5 31 179-209 6-36 (176)
158 cd01133 F1-ATPase_beta F1 ATP 95.7 0.025 5.3E-07 61.4 7.1 39 180-218 69-107 (274)
159 PRK07952 DNA replication prote 95.7 0.025 5.3E-07 60.7 7.1 27 180-206 99-125 (244)
160 TIGR02237 recomb_radB DNA repa 95.7 0.021 4.5E-07 59.6 6.4 37 180-217 12-48 (209)
161 cd03214 ABC_Iron-Siderophores_ 95.7 0.14 3E-06 52.2 12.3 126 180-313 25-161 (180)
162 COG3267 ExeA Type II secretory 95.6 0.51 1.1E-05 50.2 16.3 187 163-370 33-247 (269)
163 TIGR01359 UMP_CMP_kin_fam UMP- 95.6 0.038 8.1E-07 56.3 8.0 23 182-204 1-23 (183)
164 cd01394 radB RadB. The archaea 95.6 0.042 9.1E-07 57.8 8.6 48 169-217 7-55 (218)
165 cd03216 ABC_Carb_Monos_I This 95.6 0.088 1.9E-06 52.8 10.5 112 180-312 26-144 (163)
166 PRK08939 primosomal protein Dn 95.6 0.025 5.4E-07 62.8 7.1 26 180-205 156-181 (306)
167 PRK05800 cobU adenosylcobinami 95.6 0.023 4.9E-07 57.6 6.2 23 182-204 3-25 (170)
168 KOG0744 AAA+-type ATPase [Post 95.6 0.018 3.9E-07 62.5 5.5 26 180-205 177-202 (423)
169 PRK06871 DNA polymerase III su 95.6 0.45 9.8E-06 53.2 16.9 163 167-364 11-199 (325)
170 PRK11331 5-methylcytosine-spec 95.6 0.02 4.4E-07 66.0 6.3 42 162-206 179-220 (459)
171 TIGR03877 thermo_KaiC_1 KaiC d 95.6 0.079 1.7E-06 56.6 10.5 48 169-217 9-57 (237)
172 KOG0733 Nuclear AAA ATPase (VC 95.5 0.037 8.1E-07 64.7 8.2 92 159-286 191-293 (802)
173 KOG0991 Replication factor C, 95.5 0.21 4.6E-06 52.1 12.7 56 158-214 27-83 (333)
174 TIGR01243 CDC48 AAA family ATP 95.5 0.16 3.6E-06 63.4 14.7 29 180-208 487-515 (733)
175 PRK08233 hypothetical protein; 95.5 0.053 1.1E-06 55.0 8.5 26 180-205 3-28 (182)
176 PRK04296 thymidine kinase; Pro 95.4 0.026 5.7E-07 58.2 6.1 113 181-312 3-118 (190)
177 cd01124 KaiC KaiC is a circadi 95.4 0.047 1E-06 55.6 7.9 35 182-217 1-35 (187)
178 PF06745 KaiC: KaiC; InterPro 95.4 0.022 4.8E-07 60.2 5.6 123 170-309 8-160 (226)
179 PF13177 DNA_pol3_delta2: DNA 95.4 0.12 2.6E-06 51.8 10.6 41 164-204 3-43 (162)
180 PRK04132 replication factor C 95.4 0.23 5E-06 62.0 14.9 88 275-365 630-728 (846)
181 PLN03200 cellulose synthase-in 95.4 0.42 9.1E-06 64.3 18.0 238 622-897 57-308 (2102)
182 cd01123 Rad51_DMC1_radA Rad51_ 95.4 0.069 1.5E-06 56.7 9.3 49 169-217 7-61 (235)
183 KOG0741 AAA+-type ATPase [Post 95.4 0.12 2.5E-06 59.7 11.2 29 179-209 537-565 (744)
184 KOG2228 Origin recognition com 95.3 0.16 3.5E-06 55.8 11.7 140 158-310 24-182 (408)
185 PRK11034 clpA ATP-dependent Cl 95.3 0.053 1.1E-06 67.3 9.3 26 180-205 488-513 (758)
186 COG1124 DppF ABC-type dipeptid 95.3 0.13 2.8E-06 54.3 10.6 138 180-318 33-210 (252)
187 TIGR01420 pilT_fam pilus retra 95.3 0.037 8E-07 62.6 7.3 119 169-311 113-231 (343)
188 PRK07993 DNA polymerase III su 95.3 0.34 7.4E-06 54.5 14.9 166 166-365 10-201 (334)
189 PF02562 PhoH: PhoH-like prote 95.3 0.024 5.3E-07 58.9 5.2 127 167-310 10-156 (205)
190 PRK05973 replicative DNA helic 95.3 0.15 3.2E-06 54.4 11.1 38 179-217 63-100 (237)
191 COG2274 SunT ABC-type bacterio 95.2 3.7 8.1E-05 50.8 24.6 26 179-204 498-523 (709)
192 KOG0730 AAA+-type ATPase [Post 95.2 0.16 3.4E-06 60.4 12.0 47 162-208 438-496 (693)
193 TIGR00960 3a0501s02 Type II (G 95.2 0.32 6.9E-06 51.0 13.6 26 180-205 29-54 (216)
194 PF00448 SRP54: SRP54-type pro 95.2 0.058 1.3E-06 56.0 7.8 36 180-216 1-36 (196)
195 PRK12608 transcription termina 95.2 0.057 1.2E-06 61.0 8.1 28 181-208 134-161 (380)
196 TIGR03345 VI_ClpV1 type VI sec 95.2 0.044 9.5E-07 69.1 8.0 47 159-205 567-621 (852)
197 cd03269 ABC_putative_ATPase Th 95.1 0.33 7.2E-06 50.6 13.4 26 180-205 26-51 (210)
198 COG4608 AppF ABC-type oligopep 95.1 0.15 3.2E-06 54.8 10.6 128 180-318 39-178 (268)
199 TIGR01360 aden_kin_iso1 adenyl 95.1 0.13 2.9E-06 52.3 10.1 26 179-204 2-27 (188)
200 cd03223 ABCD_peroxisomal_ALDP 95.1 0.21 4.6E-06 50.2 11.3 119 180-314 27-152 (166)
201 COG2884 FtsE Predicted ATPase 95.1 0.18 3.8E-06 51.4 10.3 142 180-321 28-208 (223)
202 COG1102 Cmk Cytidylate kinase 95.1 0.031 6.7E-07 55.2 4.8 24 182-205 2-25 (179)
203 PRK04328 hypothetical protein; 95.1 0.18 3.9E-06 54.3 11.3 48 169-217 11-59 (249)
204 PLN00020 ribulose bisphosphate 95.0 0.045 9.7E-07 61.4 6.6 30 179-208 147-176 (413)
205 PF13238 AAA_18: AAA domain; P 95.0 0.018 4E-07 54.4 3.2 22 183-204 1-22 (129)
206 PRK10867 signal recognition pa 95.0 0.086 1.9E-06 61.2 9.1 39 179-217 99-137 (433)
207 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 95.0 0.33 7.1E-06 51.4 13.0 26 180-205 48-73 (224)
208 cd03238 ABC_UvrA The excision 95.0 0.26 5.6E-06 50.3 11.6 23 180-202 21-43 (176)
209 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.0 0.22 4.9E-06 48.8 10.8 26 180-205 26-51 (144)
210 PRK13540 cytochrome c biogenes 95.0 0.47 1E-05 49.1 13.8 26 180-205 27-52 (200)
211 cd00267 ABC_ATPase ABC (ATP-bi 94.9 0.2 4.3E-06 49.8 10.5 113 180-314 25-144 (157)
212 CHL00195 ycf46 Ycf46; Provisio 94.9 0.21 4.6E-06 58.9 12.2 27 180-206 259-285 (489)
213 COG4618 ArpD ABC-type protease 94.9 0.15 3.2E-06 58.9 10.3 53 264-316 479-538 (580)
214 KOG0735 AAA+-type ATPase [Post 94.9 0.065 1.4E-06 63.7 7.5 75 180-286 431-505 (952)
215 COG1618 Predicted nucleotide k 94.8 0.016 3.6E-07 57.0 2.3 30 180-209 5-35 (179)
216 cd01125 repA Hexameric Replica 94.8 0.23 5.1E-06 53.0 11.5 23 182-204 3-25 (239)
217 PLN03200 cellulose synthase-in 94.8 1.2 2.5E-05 60.4 19.7 272 616-901 439-723 (2102)
218 cd00544 CobU Adenosylcobinamid 94.8 0.079 1.7E-06 53.6 7.3 22 182-203 1-22 (169)
219 COG0470 HolB ATPase involved i 94.8 0.15 3.4E-06 56.6 10.5 44 162-205 5-49 (325)
220 cd03246 ABCC_Protease_Secretio 94.8 0.19 4.1E-06 50.9 10.1 26 180-205 28-53 (173)
221 cd03266 ABC_NatA_sodium_export 94.8 0.44 9.6E-06 49.9 13.3 25 180-204 31-55 (218)
222 cd03247 ABCC_cytochrome_bd The 94.8 0.33 7.2E-06 49.3 12.0 26 180-205 28-53 (178)
223 PRK00771 signal recognition pa 94.8 0.25 5.5E-06 57.5 12.2 28 179-206 94-121 (437)
224 PRK06696 uridine kinase; Valid 94.8 0.034 7.4E-07 58.8 4.8 28 178-205 20-47 (223)
225 PRK13538 cytochrome c biogenes 94.8 0.35 7.6E-06 50.3 12.3 26 180-205 27-52 (204)
226 PRK13543 cytochrome c biogenes 94.7 0.63 1.4E-05 48.8 14.2 26 180-205 37-62 (214)
227 cd03217 ABC_FeS_Assembly ABC-t 94.7 0.25 5.3E-06 51.3 11.0 25 180-204 26-50 (200)
228 TIGR01189 ccmA heme ABC export 94.7 0.53 1.1E-05 48.7 13.4 26 180-205 26-51 (198)
229 PF00485 PRK: Phosphoribulokin 94.7 0.025 5.4E-07 58.5 3.4 24 182-205 1-24 (194)
230 TIGR01243 CDC48 AAA family ATP 94.7 0.11 2.3E-06 65.0 9.6 47 160-206 180-238 (733)
231 TIGR03608 L_ocin_972_ABC putat 94.6 0.38 8.2E-06 49.9 12.2 26 180-205 24-49 (206)
232 PRK14974 cell division protein 94.6 0.26 5.5E-06 55.4 11.5 27 179-205 139-165 (336)
233 cd00020 ARM Armadillo/beta-cat 94.6 0.059 1.3E-06 50.0 5.5 74 822-899 3-76 (120)
234 COG2812 DnaX DNA polymerase II 94.6 0.12 2.5E-06 60.9 8.9 177 158-360 16-212 (515)
235 cd01122 GP4d_helicase GP4d_hel 94.6 0.23 5E-06 54.0 10.9 38 180-217 30-67 (271)
236 cd03235 ABC_Metallic_Cations A 94.6 0.7 1.5E-05 48.3 14.1 26 180-205 25-50 (213)
237 cd03283 ABC_MutS-like MutS-lik 94.6 0.24 5.2E-06 51.5 10.3 22 181-202 26-47 (199)
238 cd03115 SRP The signal recogni 94.5 0.081 1.7E-06 53.4 6.7 24 182-205 2-25 (173)
239 cd03230 ABC_DR_subfamily_A Thi 94.5 0.5 1.1E-05 47.8 12.4 26 180-205 26-51 (173)
240 smart00763 AAA_PrkA PrkA AAA d 94.5 0.041 9E-07 61.8 4.7 47 159-205 52-103 (361)
241 COG1223 Predicted ATPase (AAA+ 94.5 0.58 1.3E-05 49.8 12.7 50 159-208 122-179 (368)
242 PRK13541 cytochrome c biogenes 94.5 0.65 1.4E-05 47.9 13.4 26 180-205 26-51 (195)
243 PRK07667 uridine kinase; Provi 94.5 0.054 1.2E-06 56.0 5.3 34 172-205 8-42 (193)
244 cd03232 ABC_PDR_domain2 The pl 94.5 0.63 1.4E-05 47.9 13.3 24 180-203 33-56 (192)
245 PF13671 AAA_33: AAA domain; P 94.5 0.032 6.9E-07 54.1 3.4 24 182-205 1-24 (143)
246 TIGR01166 cbiO cobalt transpor 94.4 0.31 6.8E-06 49.9 10.8 26 180-205 18-43 (190)
247 TIGR02324 CP_lyasePhnL phospho 94.4 0.86 1.9E-05 48.0 14.4 26 180-205 34-59 (224)
248 PRK13546 teichoic acids export 94.4 0.45 9.7E-06 51.8 12.5 26 180-205 50-75 (264)
249 cd03259 ABC_Carb_Solutes_like 94.4 0.52 1.1E-05 49.3 12.6 25 180-204 26-50 (213)
250 COG0563 Adk Adenylate kinase a 94.4 0.096 2.1E-06 53.5 6.8 24 182-205 2-25 (178)
251 PRK13539 cytochrome c biogenes 94.4 0.74 1.6E-05 48.0 13.7 26 180-205 28-53 (207)
252 cd03228 ABCC_MRP_Like The MRP 94.4 0.49 1.1E-05 47.8 11.9 26 180-205 28-53 (171)
253 PRK06090 DNA polymerase III su 94.4 0.42 9.1E-06 53.3 12.3 182 166-389 11-218 (319)
254 TIGR03575 selen_PSTK_euk L-ser 94.4 0.22 4.8E-06 55.9 10.1 39 183-221 2-40 (340)
255 PRK03839 putative kinase; Prov 94.4 0.029 6.2E-07 57.2 2.9 24 182-205 2-25 (180)
256 cd03263 ABC_subfamily_A The AB 94.4 0.66 1.4E-05 48.7 13.3 26 180-205 28-53 (220)
257 cd03292 ABC_FtsE_transporter F 94.3 0.69 1.5E-05 48.3 13.4 26 180-205 27-52 (214)
258 COG0396 sufC Cysteine desulfur 94.3 0.83 1.8E-05 48.0 13.4 57 265-321 152-215 (251)
259 cd03293 ABC_NrtD_SsuB_transpor 94.3 0.77 1.7E-05 48.3 13.8 26 180-205 30-55 (220)
260 TIGR02012 tigrfam_recA protein 94.3 0.088 1.9E-06 58.6 6.8 99 169-285 42-143 (321)
261 KOG0733 Nuclear AAA ATPase (VC 94.3 0.47 1E-05 55.9 12.7 144 180-361 545-717 (802)
262 COG1131 CcmA ABC-type multidru 94.3 0.5 1.1E-05 52.2 12.8 49 267-315 146-202 (293)
263 cd03265 ABC_DrrA DrrA is the A 94.3 0.8 1.7E-05 48.1 13.9 25 180-204 26-50 (220)
264 cd03222 ABC_RNaseL_inhibitor T 94.3 0.43 9.4E-06 48.7 11.3 26 180-205 25-50 (177)
265 TIGR00959 ffh signal recogniti 94.3 0.16 3.4E-06 58.9 9.0 27 179-205 98-124 (428)
266 TIGR02655 circ_KaiC circadian 94.3 0.2 4.2E-06 59.5 10.1 49 170-218 10-59 (484)
267 PRK09544 znuC high-affinity zi 94.3 0.71 1.5E-05 49.8 13.6 26 180-205 30-55 (251)
268 PRK05480 uridine/cytidine kina 94.3 0.035 7.5E-07 58.0 3.4 26 179-204 5-30 (209)
269 PRK09302 circadian clock prote 94.2 0.18 3.8E-06 60.3 9.7 49 169-217 19-68 (509)
270 PRK01184 hypothetical protein; 94.2 0.27 5.9E-06 50.1 9.8 22 181-203 2-23 (184)
271 PRK10908 cell division protein 94.2 0.76 1.6E-05 48.4 13.5 26 180-205 28-53 (222)
272 PF13604 AAA_30: AAA domain; P 94.2 0.23 4.9E-06 51.5 9.3 39 165-205 5-43 (196)
273 cd03225 ABC_cobalt_CbiO_domain 94.2 0.67 1.5E-05 48.3 12.9 26 180-205 27-52 (211)
274 PRK06964 DNA polymerase III su 94.2 0.47 1E-05 53.5 12.3 84 274-368 131-225 (342)
275 TIGR01188 drrA daunorubicin re 94.2 0.86 1.9E-05 50.6 14.4 49 266-314 133-188 (302)
276 TIGR03740 galliderm_ABC gallid 94.2 0.67 1.5E-05 48.8 13.0 25 180-204 26-50 (223)
277 PRK10584 putative ABC transpor 94.2 0.91 2E-05 47.9 14.0 26 180-205 36-61 (228)
278 cd03258 ABC_MetN_methionine_tr 94.2 0.79 1.7E-05 48.6 13.6 26 180-205 31-56 (233)
279 PRK09270 nucleoside triphospha 94.2 0.054 1.2E-06 57.5 4.6 37 170-206 23-59 (229)
280 PRK11248 tauB taurine transpor 94.1 0.88 1.9E-05 49.2 14.0 26 180-205 27-52 (255)
281 PRK09354 recA recombinase A; P 94.1 0.11 2.4E-06 58.4 7.1 99 169-285 47-148 (349)
282 cd00983 recA RecA is a bacter 94.1 0.11 2.3E-06 58.0 6.9 48 169-217 42-91 (325)
283 cd03237 ABC_RNaseL_inhibitor_d 94.1 0.45 9.7E-06 51.2 11.6 26 180-205 25-50 (246)
284 KOG2227 Pre-initiation complex 94.1 0.46 9.9E-06 54.5 11.8 114 157-287 149-268 (529)
285 PF03215 Rad17: Rad17 cell cyc 94.1 0.7 1.5E-05 55.0 14.2 42 164-205 25-70 (519)
286 KOG0166 Karyopherin (importin) 94.1 0.13 2.8E-06 60.0 7.8 110 784-897 68-177 (514)
287 COG1136 SalX ABC-type antimicr 94.1 0.38 8.2E-06 50.8 10.6 58 260-317 145-210 (226)
288 TIGR03499 FlhF flagellar biosy 94.1 0.12 2.7E-06 56.7 7.4 26 180-205 194-219 (282)
289 TIGR01277 thiQ thiamine ABC tr 94.1 1.1 2.4E-05 46.9 14.3 26 180-205 24-49 (213)
290 cd03226 ABC_cobalt_CbiO_domain 94.1 0.95 2.1E-05 47.0 13.7 26 180-205 26-51 (205)
291 TIGR03881 KaiC_arch_4 KaiC dom 94.1 0.32 6.9E-06 51.5 10.3 48 169-217 8-56 (229)
292 PRK10733 hflB ATP-dependent me 94.1 0.33 7.1E-06 59.7 11.6 29 180-208 185-213 (644)
293 PRK11264 putative amino-acid A 94.1 1.1 2.4E-05 48.1 14.5 25 180-204 29-53 (250)
294 cd01129 PulE-GspE PulE/GspE Th 94.1 0.24 5.3E-06 53.8 9.5 117 165-309 67-183 (264)
295 PRK14269 phosphate ABC transpo 94.1 0.7 1.5E-05 49.5 13.0 25 180-204 28-52 (246)
296 TIGR01351 adk adenylate kinase 94.0 0.31 6.8E-06 50.9 10.0 22 183-204 2-23 (210)
297 PRK00131 aroK shikimate kinase 94.0 0.041 9E-07 55.2 3.3 26 180-205 4-29 (175)
298 cd03264 ABC_drug_resistance_li 94.0 0.6 1.3E-05 48.7 12.1 23 182-204 27-49 (211)
299 cd03301 ABC_MalK_N The N-termi 94.0 0.96 2.1E-05 47.2 13.7 26 180-205 26-51 (213)
300 cd02019 NK Nucleoside/nucleoti 94.0 0.04 8.7E-07 46.9 2.6 23 182-204 1-23 (69)
301 cd03297 ABC_ModC_molybdenum_tr 94.0 0.66 1.4E-05 48.5 12.4 26 179-205 23-48 (214)
302 PRK14247 phosphate ABC transpo 94.0 1 2.2E-05 48.3 14.2 25 180-204 29-53 (250)
303 PF08423 Rad51: Rad51; InterP 94.0 0.21 4.6E-06 54.1 8.8 49 169-217 26-80 (256)
304 TIGR00235 udk uridine kinase. 94.0 0.046 1E-06 57.1 3.6 27 179-205 5-31 (207)
305 cd00020 ARM Armadillo/beta-cat 94.0 0.33 7.1E-06 44.9 9.1 108 784-897 9-116 (120)
306 PRK10619 histidine/lysine/argi 94.0 1.2 2.7E-05 48.0 14.8 26 180-205 31-56 (257)
307 PRK00625 shikimate kinase; Pro 93.9 0.039 8.5E-07 56.0 2.9 24 182-205 2-25 (173)
308 TIGR02673 FtsE cell division A 93.9 0.64 1.4E-05 48.6 12.1 26 180-205 28-53 (214)
309 cd00984 DnaB_C DnaB helicase C 93.9 0.29 6.4E-06 52.1 9.6 38 180-217 13-50 (242)
310 TIGR03878 thermo_KaiC_2 KaiC d 93.9 0.18 3.8E-06 54.8 7.9 37 180-217 36-72 (259)
311 PTZ00301 uridine kinase; Provi 93.8 0.047 1E-06 57.2 3.3 26 180-205 3-28 (210)
312 PRK11247 ssuB aliphatic sulfon 93.8 1.2 2.5E-05 48.3 14.2 26 180-205 38-63 (257)
313 cd03268 ABC_BcrA_bacitracin_re 93.8 0.77 1.7E-05 47.8 12.4 25 180-204 26-50 (208)
314 PRK04040 adenylate kinase; Pro 93.8 0.047 1E-06 56.3 3.2 26 180-205 2-27 (188)
315 cd03231 ABC_CcmA_heme_exporter 93.7 0.84 1.8E-05 47.3 12.5 25 180-204 26-50 (201)
316 cd03215 ABC_Carb_Monos_II This 93.7 0.41 8.8E-06 48.9 10.0 26 180-205 26-51 (182)
317 cd03294 ABC_Pro_Gly_Bertaine T 93.7 1.2 2.7E-05 48.4 14.4 26 180-205 50-75 (269)
318 TIGR02902 spore_lonB ATP-depen 93.7 0.6 1.3E-05 56.0 12.8 44 159-203 66-109 (531)
319 PRK13947 shikimate kinase; Pro 93.7 0.046 9.9E-07 55.0 2.8 26 182-207 3-28 (171)
320 COG3854 SpoIIIAA ncharacterize 93.7 0.44 9.5E-06 49.9 9.8 116 181-314 138-257 (308)
321 PRK06547 hypothetical protein; 93.7 0.06 1.3E-06 54.6 3.7 28 178-205 13-40 (172)
322 PRK13537 nodulation ABC transp 93.7 0.29 6.2E-06 54.5 9.4 48 267-314 148-202 (306)
323 PRK13948 shikimate kinase; Pro 93.7 0.087 1.9E-06 54.0 4.8 30 178-207 8-37 (182)
324 PRK04301 radA DNA repair and r 93.6 0.27 5.8E-06 55.0 9.2 49 169-217 90-144 (317)
325 TIGR03771 anch_rpt_ABC anchore 93.6 1.1 2.4E-05 47.3 13.4 26 180-205 6-31 (223)
326 KOG0727 26S proteasome regulat 93.6 0.6 1.3E-05 49.2 10.8 47 162-208 159-217 (408)
327 cd03218 ABC_YhbG The ABC trans 93.6 1.2 2.6E-05 47.1 13.8 25 180-204 26-50 (232)
328 PRK03846 adenylylsulfate kinas 93.6 0.42 9.1E-06 49.5 10.0 28 178-205 22-49 (198)
329 TIGR02211 LolD_lipo_ex lipopro 93.6 1.3 2.9E-05 46.4 13.9 26 180-205 31-56 (221)
330 TIGR01288 nodI ATP-binding ABC 93.6 1.3 2.7E-05 49.3 14.3 26 180-205 30-55 (303)
331 PRK11124 artP arginine transpo 93.6 1.1 2.5E-05 47.7 13.5 26 180-205 28-53 (242)
332 PRK11300 livG leucine/isoleuci 93.6 1.2 2.6E-05 47.9 13.8 25 180-204 31-55 (255)
333 TIGR03005 ectoine_ehuA ectoine 93.5 1 2.2E-05 48.4 13.2 26 180-205 26-51 (252)
334 TIGR01184 ntrCD nitrate transp 93.5 1.1 2.4E-05 47.5 13.3 26 180-205 11-36 (230)
335 cd03224 ABC_TM1139_LivF_branch 93.5 1.3 2.8E-05 46.5 13.7 25 180-204 26-50 (222)
336 cd03295 ABC_OpuCA_Osmoprotecti 93.5 1.2 2.7E-05 47.4 13.7 26 180-205 27-52 (242)
337 TIGR01069 mutS2 MutS2 family p 93.5 0.17 3.6E-06 63.2 7.8 108 274-390 401-522 (771)
338 KOG1969 DNA replication checkp 93.5 0.19 4.1E-06 60.2 7.7 26 180-205 326-351 (877)
339 PRK10575 iron-hydroxamate tran 93.5 1.5 3.3E-05 47.6 14.4 25 180-204 37-61 (265)
340 PRK14267 phosphate ABC transpo 93.4 1.3 2.9E-05 47.5 13.9 26 180-205 30-55 (253)
341 PHA02244 ATPase-like protein 93.4 0.16 3.4E-06 57.4 6.6 26 182-207 121-146 (383)
342 COG0703 AroK Shikimate kinase 93.4 0.082 1.8E-06 53.2 4.0 29 181-209 3-31 (172)
343 cd03300 ABC_PotA_N PotA is an 93.4 1.2 2.7E-05 47.2 13.4 26 180-205 26-51 (232)
344 KOG1514 Origin recognition com 93.4 1.2 2.6E-05 53.5 14.0 124 162-307 400-546 (767)
345 TIGR02236 recomb_radA DNA repa 93.4 0.35 7.6E-06 53.8 9.5 50 169-218 83-138 (310)
346 KOG0729 26S proteasome regulat 93.4 0.7 1.5E-05 49.1 10.8 27 179-205 210-236 (435)
347 cd00227 CPT Chloramphenicol (C 93.3 0.063 1.4E-06 54.4 3.2 25 181-205 3-27 (175)
348 PF13481 AAA_25: AAA domain; P 93.3 0.15 3.2E-06 52.3 5.9 25 181-205 33-57 (193)
349 PRK15439 autoinducer 2 ABC tra 93.3 1.2 2.5E-05 53.3 14.5 26 180-205 37-62 (510)
350 PRK11831 putative ABC transpor 93.3 1.4 3E-05 48.1 13.7 26 180-205 33-58 (269)
351 PRK08699 DNA polymerase III su 93.2 1 2.2E-05 50.6 12.8 25 180-204 21-45 (325)
352 PF14532 Sigma54_activ_2: Sigm 93.2 0.27 5.9E-06 47.7 7.3 41 165-205 5-46 (138)
353 PRK10463 hydrogenase nickel in 93.2 0.46 1E-05 52.1 9.7 31 178-208 102-132 (290)
354 PRK00279 adk adenylate kinase; 93.2 0.41 8.8E-06 50.3 9.1 24 182-205 2-25 (215)
355 TIGR02322 phosphon_PhnN phosph 93.2 0.066 1.4E-06 54.4 3.0 25 181-205 2-26 (179)
356 KOG0736 Peroxisome assembly fa 93.2 0.43 9.4E-06 57.6 10.0 102 150-287 664-776 (953)
357 cd02027 APSK Adenosine 5'-phos 93.2 0.32 7E-06 48.0 7.8 24 182-205 1-24 (149)
358 PRK06217 hypothetical protein; 93.1 0.066 1.4E-06 54.8 3.0 24 182-205 3-26 (183)
359 PF13424 TPR_12: Tetratricopep 93.1 0.22 4.9E-06 42.8 6.0 73 637-711 1-73 (78)
360 PRK09493 glnQ glutamine ABC tr 93.1 0.87 1.9E-05 48.6 11.8 25 180-204 27-51 (240)
361 smart00534 MUTSac ATPase domai 93.1 0.061 1.3E-06 55.2 2.7 49 268-316 69-128 (185)
362 cd02023 UMPK Uridine monophosp 93.1 0.058 1.3E-06 55.8 2.6 23 182-204 1-23 (198)
363 KOG0734 AAA+-type ATPase conta 93.1 0.21 4.6E-06 57.7 7.2 49 161-209 307-366 (752)
364 cd01428 ADK Adenylate kinase ( 93.1 0.81 1.8E-05 46.8 11.1 22 183-204 2-23 (194)
365 PF07728 AAA_5: AAA domain (dy 93.1 0.073 1.6E-06 51.5 3.2 23 183-205 2-24 (139)
366 PRK11153 metN DL-methionine tr 93.1 1.4 3.1E-05 49.8 14.0 26 180-205 31-56 (343)
367 PRK08533 flagellar accessory p 93.1 0.47 1E-05 50.5 9.5 25 180-204 24-48 (230)
368 PRK13651 cobalt transporter AT 93.1 1.5 3.3E-05 48.7 14.0 26 180-205 33-58 (305)
369 PTZ00088 adenylate kinase 1; P 93.1 0.27 5.9E-06 52.3 7.6 23 183-205 9-31 (229)
370 COG0572 Udk Uridine kinase [Nu 93.1 0.08 1.7E-06 55.3 3.5 29 179-207 7-35 (218)
371 PRK14738 gmk guanylate kinase; 93.1 0.075 1.6E-06 55.6 3.3 30 174-203 7-36 (206)
372 PRK13650 cbiO cobalt transport 93.1 1.2 2.5E-05 48.9 12.9 26 180-205 33-58 (279)
373 TIGR03873 F420-0_ABC_ATP propo 93.0 1.6 3.6E-05 47.0 13.8 26 180-205 27-52 (256)
374 PRK09984 phosphonate/organopho 93.0 1.8 3.8E-05 46.9 14.0 26 180-205 30-55 (262)
375 cd02020 CMPK Cytidine monophos 93.0 0.062 1.4E-06 52.2 2.4 24 182-205 1-24 (147)
376 PRK15064 ABC transporter ATP-b 92.9 1.2 2.7E-05 53.4 13.9 26 180-205 27-52 (530)
377 PF08433 KTI12: Chromatin asso 92.9 0.29 6.2E-06 53.4 7.7 25 181-205 2-26 (270)
378 PRK13647 cbiO cobalt transport 92.9 0.9 1.9E-05 49.7 11.7 26 180-205 31-56 (274)
379 cd00071 GMPK Guanosine monopho 92.9 0.078 1.7E-06 51.7 3.0 27 182-208 1-27 (137)
380 PRK11144 modC molybdate transp 92.9 0.36 7.7E-06 54.9 8.8 26 180-205 24-49 (352)
381 cd03281 ABC_MSH5_euk MutS5 hom 92.9 0.19 4.1E-06 52.8 6.1 23 180-202 29-51 (213)
382 TIGR02655 circ_KaiC circadian 92.9 0.32 7E-06 57.6 8.7 102 167-286 249-364 (484)
383 TIGR03880 KaiC_arch_3 KaiC dom 92.9 0.48 1E-05 50.0 9.3 47 170-217 5-52 (224)
384 PRK13949 shikimate kinase; Pro 92.9 0.078 1.7E-06 53.6 3.0 24 182-205 3-26 (169)
385 cd03254 ABCC_Glucan_exporter_l 92.9 1.6 3.4E-05 46.1 13.2 26 180-205 29-54 (229)
386 cd03244 ABCC_MRP_domain2 Domai 92.9 0.53 1.1E-05 49.5 9.4 25 180-204 30-54 (221)
387 PRK05703 flhF flagellar biosyn 92.8 0.36 7.9E-06 56.1 8.8 25 180-204 221-245 (424)
388 PRK14273 phosphate ABC transpo 92.8 1.1 2.3E-05 48.3 12.0 26 180-205 33-58 (254)
389 TIGR02868 CydC thiol reductant 92.8 1.2 2.7E-05 53.4 13.7 27 179-205 360-386 (529)
390 cd02021 GntK Gluconate kinase 92.8 0.071 1.5E-06 52.4 2.6 23 182-204 1-23 (150)
391 PF00406 ADK: Adenylate kinase 92.8 0.32 6.9E-06 48.0 7.2 91 185-295 1-94 (151)
392 TIGR03263 guanyl_kin guanylate 92.8 0.085 1.9E-06 53.5 3.2 24 181-204 2-25 (180)
393 smart00487 DEXDc DEAD-like hel 92.8 0.76 1.6E-05 46.1 10.3 39 165-206 12-51 (201)
394 COG1428 Deoxynucleoside kinase 92.8 0.15 3.2E-06 52.8 4.9 26 180-205 4-29 (216)
395 PRK13545 tagH teichoic acids e 92.8 1.1 2.3E-05 53.3 12.6 26 180-205 50-75 (549)
396 PRK13640 cbiO cobalt transport 92.7 0.45 9.9E-06 52.2 9.1 26 180-205 33-58 (282)
397 TIGR02314 ABC_MetN D-methionin 92.7 1.8 3.8E-05 49.1 13.9 26 180-205 31-56 (343)
398 PRK00889 adenylylsulfate kinas 92.7 0.1 2.2E-06 52.9 3.6 26 180-205 4-29 (175)
399 KOG1532 GTPase XAB1, interacts 92.7 0.26 5.5E-06 52.7 6.5 40 180-220 19-58 (366)
400 PRK11231 fecE iron-dicitrate t 92.7 2.4 5.2E-05 45.7 14.5 25 180-204 28-52 (255)
401 cd03282 ABC_MSH4_euk MutS4 hom 92.7 0.35 7.5E-06 50.5 7.6 44 274-317 107-158 (204)
402 COG1126 GlnQ ABC-type polar am 92.7 1.2 2.6E-05 46.5 11.2 57 260-316 139-202 (240)
403 PRK11650 ugpC glycerol-3-phosp 92.7 0.51 1.1E-05 53.7 9.6 26 180-205 30-55 (356)
404 cd00464 SK Shikimate kinase (S 92.7 0.08 1.7E-06 52.0 2.8 23 183-205 2-24 (154)
405 PRK10875 recD exonuclease V su 92.7 0.34 7.4E-06 58.8 8.6 25 180-204 167-191 (615)
406 cd03298 ABC_ThiQ_thiamine_tran 92.7 1.8 3.9E-05 45.1 13.2 26 180-205 24-49 (211)
407 TIGR00416 sms DNA repair prote 92.7 0.36 7.8E-06 56.6 8.6 51 166-217 79-130 (454)
408 COG2607 Predicted ATPase (AAA+ 92.6 0.57 1.2E-05 49.4 8.8 61 149-209 51-114 (287)
409 cd02025 PanK Pantothenate kina 92.6 0.073 1.6E-06 56.3 2.5 24 182-205 1-24 (220)
410 cd02024 NRK1 Nicotinamide ribo 92.6 0.076 1.6E-06 54.6 2.5 23 182-204 1-23 (187)
411 COG0488 Uup ATPase components 92.6 3.6 7.8E-05 49.2 16.8 139 180-320 348-506 (530)
412 PRK13536 nodulation factor exp 92.6 0.52 1.1E-05 53.2 9.4 49 266-314 181-236 (340)
413 PRK14259 phosphate ABC transpo 92.5 2.3 5.1E-05 46.3 14.2 25 180-204 39-63 (269)
414 cd01121 Sms Sms (bacterial rad 92.5 0.3 6.4E-06 55.8 7.4 49 168-217 69-118 (372)
415 TIGR03522 GldA_ABC_ATP gliding 92.5 2.6 5.5E-05 46.8 14.7 26 180-205 28-53 (301)
416 cd03369 ABCC_NFT1 Domain 2 of 92.5 2.9 6.3E-05 43.4 14.4 25 180-204 34-58 (207)
417 PRK13648 cbiO cobalt transport 92.5 1.4 3E-05 48.0 12.4 26 180-205 35-60 (269)
418 PRK13409 putative ATPase RIL; 92.5 1.5 3.3E-05 53.4 13.8 135 180-316 365-520 (590)
419 COG1120 FepC ABC-type cobalami 92.4 1.5 3.3E-05 47.2 12.2 61 260-320 141-209 (258)
420 PRK13946 shikimate kinase; Pro 92.4 0.097 2.1E-06 53.6 3.1 26 180-205 10-35 (184)
421 KOG0728 26S proteasome regulat 92.4 3.9 8.4E-05 43.4 14.5 43 162-204 151-205 (404)
422 cd01130 VirB11-like_ATPase Typ 92.4 0.53 1.1E-05 48.3 8.5 117 166-307 14-132 (186)
423 TIGR03265 PhnT2 putative 2-ami 92.4 0.48 1E-05 53.8 8.9 26 180-205 30-55 (353)
424 PRK14528 adenylate kinase; Pro 92.4 0.85 1.8E-05 46.8 10.0 25 181-205 2-26 (186)
425 PLN03187 meiotic recombination 92.4 0.36 7.7E-06 54.4 7.7 50 169-218 114-169 (344)
426 PRK11000 maltose/maltodextrin 92.4 0.48 1E-05 54.2 9.0 26 180-205 29-54 (369)
427 KOG0166 Karyopherin (importin) 92.4 2.3 5E-05 49.9 14.3 227 620-895 191-430 (514)
428 PRK02496 adk adenylate kinase; 92.4 0.61 1.3E-05 47.5 8.9 24 182-205 3-26 (184)
429 TIGR03411 urea_trans_UrtD urea 92.4 1.7 3.7E-05 46.3 12.8 25 180-204 28-52 (242)
430 PF03308 ArgK: ArgK protein; 92.3 0.2 4.4E-06 53.6 5.3 41 165-205 14-54 (266)
431 PRK05439 pantothenate kinase; 92.3 0.15 3.3E-06 56.5 4.7 38 168-205 72-111 (311)
432 PF07726 AAA_3: ATPase family 92.3 0.055 1.2E-06 51.8 1.0 27 183-209 2-28 (131)
433 PF00910 RNA_helicase: RNA hel 92.3 0.066 1.4E-06 49.7 1.5 23 183-205 1-23 (107)
434 cd02028 UMPK_like Uridine mono 92.3 0.091 2E-06 53.6 2.7 24 182-205 1-24 (179)
435 COG3910 Predicted ATPase [Gene 92.3 2.5 5.5E-05 43.1 12.6 58 262-320 134-198 (233)
436 PRK10078 ribose 1,5-bisphospho 92.3 0.11 2.4E-06 53.2 3.3 25 181-205 3-27 (186)
437 PRK00409 recombination and DNA 92.3 0.21 4.5E-06 62.6 6.2 108 274-390 406-527 (782)
438 PF01583 APS_kinase: Adenylyls 92.3 0.12 2.6E-06 51.4 3.4 28 180-207 2-29 (156)
439 TIGR02238 recomb_DMC1 meiotic 92.2 0.66 1.4E-05 51.7 9.6 50 169-218 84-139 (313)
440 PRK11823 DNA repair protein Ra 92.2 0.39 8.4E-06 56.3 8.1 51 166-217 65-116 (446)
441 PRK10762 D-ribose transporter 92.2 1.7 3.7E-05 51.8 13.8 25 180-204 30-54 (501)
442 COG0542 clpA ATP-binding subun 92.2 0.9 1.9E-05 56.0 11.2 125 158-310 170-310 (786)
443 TIGR01313 therm_gnt_kin carboh 92.2 0.088 1.9E-06 52.6 2.3 22 183-204 1-22 (163)
444 cd03285 ABC_MSH2_euk MutS2 hom 92.1 0.17 3.6E-06 53.7 4.5 24 179-202 29-52 (222)
445 TIGR00064 ftsY signal recognit 92.1 0.52 1.1E-05 51.5 8.5 27 179-205 71-97 (272)
446 PRK00300 gmk guanylate kinase; 92.1 0.11 2.4E-06 53.9 3.1 26 180-205 5-30 (205)
447 PRK13652 cbiO cobalt transport 92.1 2.1 4.5E-05 46.9 13.2 26 180-205 30-55 (277)
448 cd03213 ABCG_EPDR ABCG transpo 92.1 1.9 4E-05 44.5 12.2 25 180-204 35-59 (194)
449 PRK10070 glycine betaine trans 92.1 2.3 4.9E-05 49.2 14.0 26 180-205 54-79 (400)
450 cd03250 ABCC_MRP_domain1 Domai 92.1 2.8 6.1E-05 43.4 13.6 26 180-205 31-56 (204)
451 PRK05057 aroK shikimate kinase 92.1 0.11 2.5E-06 52.5 3.1 25 181-205 5-29 (172)
452 COG1084 Predicted GTPase [Gene 92.0 1.4 3.1E-05 48.6 11.4 27 177-203 165-191 (346)
453 TIGR03375 type_I_sec_LssB type 92.0 1.4 2.9E-05 54.9 13.0 26 180-205 491-516 (694)
454 PRK04182 cytidylate kinase; Pr 92.0 0.13 2.7E-06 52.0 3.3 24 182-205 2-25 (180)
455 PRK11432 fbpC ferric transport 92.0 0.63 1.4E-05 52.8 9.2 25 180-204 32-56 (351)
456 PRK13975 thymidylate kinase; P 92.0 0.12 2.5E-06 53.3 3.0 26 181-206 3-28 (196)
457 cd03233 ABC_PDR_domain1 The pl 91.9 1 2.2E-05 46.7 10.1 26 180-205 33-58 (202)
458 PRK14530 adenylate kinase; Pro 91.9 0.11 2.3E-06 54.7 2.7 25 181-205 4-28 (215)
459 PRK12339 2-phosphoglycerate ki 91.9 0.13 2.8E-06 53.4 3.3 25 180-204 3-27 (197)
460 TIGR02524 dot_icm_DotB Dot/Icm 91.8 0.23 5.1E-06 56.3 5.5 108 180-307 134-243 (358)
461 TIGR00554 panK_bact pantothena 91.8 0.21 4.5E-06 55.0 5.0 26 179-204 61-86 (290)
462 PRK13549 xylose transporter AT 91.8 2.2 4.7E-05 51.0 14.1 26 180-205 31-56 (506)
463 PRK14527 adenylate kinase; Pro 91.8 0.14 2.9E-06 52.8 3.3 27 179-205 5-31 (191)
464 COG4088 Predicted nucleotide k 91.8 0.36 7.7E-06 49.7 6.1 26 181-206 2-27 (261)
465 PRK14722 flhF flagellar biosyn 91.7 0.27 5.8E-06 56.0 5.8 26 180-205 137-162 (374)
466 COG0468 RecA RecA/RadA recombi 91.7 0.59 1.3E-05 51.1 8.1 48 169-217 48-96 (279)
467 cd03299 ABC_ModC_like Archeal 91.6 2.2 4.9E-05 45.3 12.6 26 180-205 25-50 (235)
468 TIGR02788 VirB11 P-type DNA tr 91.6 0.64 1.4E-05 51.8 8.7 109 180-311 144-254 (308)
469 PRK05537 bifunctional sulfate 91.6 0.26 5.5E-06 59.5 5.9 49 158-206 369-418 (568)
470 KOG0739 AAA+-type ATPase [Post 91.6 0.76 1.6E-05 49.7 8.6 51 158-208 133-194 (439)
471 PRK12724 flagellar biosynthesi 91.6 0.51 1.1E-05 54.3 7.8 25 180-204 223-247 (432)
472 PRK14254 phosphate ABC transpo 91.5 2.5 5.3E-05 46.6 13.1 25 180-204 65-89 (285)
473 cd03291 ABCC_CFTR1 The CFTR su 91.5 3.2 6.9E-05 45.6 13.9 26 180-205 63-88 (282)
474 PRK11607 potG putrescine trans 91.5 0.7 1.5E-05 53.0 9.0 25 180-204 45-69 (377)
475 PRK11889 flhF flagellar biosyn 91.5 0.44 9.5E-06 54.3 7.1 26 180-205 241-266 (436)
476 PRK14737 gmk guanylate kinase; 91.5 0.19 4.1E-06 51.7 4.0 26 179-204 3-28 (186)
477 PRK09700 D-allose transporter 91.5 2.5 5.4E-05 50.6 14.1 25 180-204 31-55 (510)
478 TIGR02173 cyt_kin_arch cytidyl 91.4 0.15 3.2E-06 51.1 3.0 24 182-205 2-25 (171)
479 cd00561 CobA_CobO_BtuR ATP:cor 91.4 0.92 2E-05 45.4 8.6 44 268-311 87-139 (159)
480 TIGR00150 HI0065_YjeE ATPase, 91.4 0.25 5.5E-06 47.8 4.5 27 179-205 21-47 (133)
481 PF00625 Guanylate_kin: Guanyl 91.4 0.13 2.9E-06 52.5 2.7 30 180-209 2-31 (183)
482 cd03280 ABC_MutS2 MutS2 homolo 91.4 1.1 2.4E-05 46.4 9.7 21 181-201 29-49 (200)
483 PRK14526 adenylate kinase; Pro 91.4 0.91 2E-05 47.7 9.0 23 183-205 3-25 (211)
484 COG0464 SpoVK ATPases of the A 91.3 0.33 7.1E-06 57.8 6.3 30 179-208 275-304 (494)
485 PF03205 MobB: Molybdopterin g 91.3 0.18 3.9E-06 49.4 3.4 25 181-205 1-25 (140)
486 COG1419 FlhF Flagellar GTP-bin 91.3 0.47 1E-05 53.9 7.1 25 180-204 203-228 (407)
487 KOG0927 Predicted transporter 91.3 0.47 1E-05 55.3 7.1 48 158-205 394-441 (614)
488 TIGR02142 modC_ABC molybdenum 91.3 2.1 4.5E-05 48.7 12.5 26 180-205 23-48 (354)
489 KOG2170 ATPase of the AAA+ sup 91.3 0.72 1.6E-05 50.2 8.0 25 180-204 110-134 (344)
490 COG1066 Sms Predicted ATP-depe 91.2 0.56 1.2E-05 53.1 7.5 102 162-285 74-178 (456)
491 COG1936 Predicted nucleotide k 91.2 0.15 3.3E-06 51.0 2.8 20 182-201 2-21 (180)
492 TIGR03258 PhnT 2-aminoethylpho 91.2 0.82 1.8E-05 52.1 9.1 25 180-204 31-55 (362)
493 cd03243 ABC_MutS_homologs The 91.2 1.3 2.9E-05 45.9 10.0 21 181-201 30-50 (202)
494 KOG0735 AAA+-type ATPase [Post 91.1 1.7 3.8E-05 52.2 11.6 90 162-287 671-772 (952)
495 PRK03731 aroL shikimate kinase 91.1 0.15 3.2E-06 51.4 2.7 25 181-205 3-27 (171)
496 PRK15455 PrkA family serine pr 91.1 0.23 4.9E-06 58.9 4.4 47 159-205 77-128 (644)
497 PRK08760 replicative DNA helic 91.0 0.87 1.9E-05 53.9 9.4 37 169-205 218-254 (476)
498 PLN03186 DNA repair protein RA 91.0 1.1 2.5E-05 50.4 9.9 50 169-218 111-166 (342)
499 PRK10751 molybdopterin-guanine 91.0 0.18 3.9E-06 51.1 3.1 28 179-206 5-32 (173)
500 PLN02318 phosphoribulokinase/u 91.0 0.26 5.7E-06 58.7 4.9 37 168-204 53-89 (656)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=7.4e-56 Score=540.30 Aligned_cols=553 Identities=17% Similarity=0.191 Sum_probs=386.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhcHHHHHHHHHhHHHHHHHHhhHHHHhhhh
Q 002559 13 IVTSMVGAVHALEQASRNLDEAPKRIRSLEDFVCDLENLMRRIKQKHAYKLHNPQLDHQLKSLNSLIERLHPKIRKARRM 92 (908)
Q Consensus 13 ~vs~l~~~~~~L~~~~~~l~~l~~~Le~L~~~L~d~e~~~~~~~~~~~~~~w~~qVr~~a~d~eD~ld~~~~~~~~~~~~ 92 (908)
+.+.+.+....+.....++.++++.+..|+.++++++... ........|...++++.|+++|.++.+.......+..
T Consensus 12 ~~~~l~~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~~---~~~~~~~~~~e~~~~~~~~~e~~~~~~~v~~~~~~~~ 88 (889)
T KOG4658|consen 12 LDQLLNRESECLDGKDNYILELKENLKALQSALEDLDAKR---DDLERRVNWEEDVGDLVYLAEDIIWLFLVEEIERKAN 88 (889)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhc---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445555666777777789999999999999999999977 5666678899999999999999999997665553211
Q ss_pred hhhc-c--cccccceecccccccHHHHHHHHHHHHHHHHHHHhhhhhhhhhHhhhcc------ccCCccccccccCCCcC
Q 002559 93 VSKS-K--IKNLAHVVWTSMAGDPLRKLLNSINDDLNWWLESQILAQNVEKVIELTA------QEVPTRLKVKAEQGYPI 163 (908)
Q Consensus 93 ~~~~-~--~~~~~~~~~~~~~~~~i~~~I~~I~~~l~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~ 163 (908)
.... + ........ ...+.....+..+.+++............ ...+.... ..++.....+... +|.
T Consensus 89 ~~l~~~~~~~~~~c~~---~~~~~~~~~~~~~~~rv~~~l~~ve~l~~-~~~~~~~~~~~~~~~~~e~~~~~~~~~-VG~ 163 (889)
T KOG4658|consen 89 DLLSTRSVERQRLCLC---GFCSKNVSDSYKYGKRVSKVLREVESLGS-KGVFEVVGESLDPREKVETRPIQSESD-VGL 163 (889)
T ss_pred HHhhhhHHHHHHHhhh---hhHhHhhhhhHhHHHHHHHHHHHHHHhcc-ccceecccccccchhhcccCCCCcccc-ccH
Confidence 1110 0 00111100 11122222333333333333322111110 01011111 0111111111122 888
Q ss_pred ccHHHHHHHHHhccCCceEEEEEecCCCChHHHHHHHHhCCC---CccccceEEEeeeeeeccccccCCcchHHHHHHHH
Q 002559 164 SSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPP---ERFVGGAVELGFGQWCSRAACNGSKSDYQKRLARK 240 (908)
Q Consensus 164 e~~~~~l~~LL~~~~~~~vV~I~GmgGiGKTtLA~~v~~~~~---~~F~~~~f~~~v~~wv~~~~~~~s~~~~~~~l~~~ 240 (908)
+...+.+...|-.++. .+++|+||||+||||||+.++|+.. .+| +.++|+.| |+++...++..+
T Consensus 164 e~~~~kl~~~L~~d~~-~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~F-d~~iWV~V-----------Sk~f~~~~iq~~ 230 (889)
T KOG4658|consen 164 ETMLEKLWNRLMEDDV-GIVGIYGMGGVGKTTLARQIFNKFDEVGNHF-DGVIWVVV-----------SKEFTTRKIQQT 230 (889)
T ss_pred HHHHHHHHHHhccCCC-CEEEEECCCcccHHHHHHHHhcccchhcccC-ceEEEEEE-----------cccccHHhHHHH
Confidence 8888887777766544 9999999999999999999999875 445 44544433 778888888888
Q ss_pred HHHHHHHhccccccCCCCCCHHHHHHHHHHHhccCCeeEEEecCCchhHHHHHhhhcCC---CcEEEEEccchhhhhh-c
Q 002559 241 ISKFLVQIGFWKKIKDENSDLEYLCCLLQEALYGKSILILLDDVWEQDIVERFAKLYDN---DCKYLVTTRNEAVYEI-T 316 (908)
Q Consensus 241 i~~~L~~lg~~~~~~~~~~~~~~l~~~l~~~L~~kr~LLVLDDV~~~~~~e~l~~~~~~---gsrILVTTR~~~va~~-~ 316 (908)
|+..+...+ ......+.+++...+.+.|++|||||||||||+..+|+.+..++|. ||+|++|||+..|+.. +
T Consensus 231 Il~~l~~~~----~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m 306 (889)
T KOG4658|consen 231 ILERLGLLD----EEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAM 306 (889)
T ss_pred HHHHhccCC----cccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccc
Confidence 876553322 1112223478899999999999999999999999999999988864 6999999999999997 6
Q ss_pred cccee----cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhHhCCchhhHhHhhhhhhccCCHHHHHHHHHHhchh-
Q 002559 317 EAEKV----ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGHHPLTVAVMGKALRKELRSEKWEKAITDLSTF- 391 (908)
Q Consensus 317 ~~~~~----~L~~~ea~~Lf~~~~~~~~~~~~~~l~~i~~~Iv~~cgGLPLAI~~ig~~L~~~~~~~eW~~~l~~L~~~- 391 (908)
+.... .|+.+|||+||.+.++.......+..+++|++++++|+|+|||+.++|+.|+.+.+..+|+.+++.+.+.
T Consensus 307 ~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~ 386 (889)
T KOG4658|consen 307 GVDYPIEVECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSL 386 (889)
T ss_pred cCCccccccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccc
Confidence 65332 7999999999999998776666666899999999999999999999999999998999999999999876
Q ss_pred hcCCCCCCCccchhhhcccccccchhhhhhccCcHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHhh----------cch
Q 002559 392 ATCAPGPVSYVNEKEAENTLTIFGSFEFSLEAMPRDSRRLFIALAALSWAEPVPEACLEAIWSILVQ----------KSL 461 (908)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~I~~~L~lSy~~L~~~~K~cfl~lsiFp~~~~i~~~~L~~lW~a~g~----------~~~ 461 (908)
....++ ....|++++.+||+.||++.|.||+|||+||+|+.|+.+.|+.+|+++|. .+.
T Consensus 387 ~~~~~~-----------~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~ 455 (889)
T KOG4658|consen 387 AADFSG-----------MEESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDV 455 (889)
T ss_pred cCCCCc-----------hhhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcc
Confidence 222211 12378899999999999889999999999999999999999999999992 356
Q ss_pred HHHHHHHHHHcCCccccC---CCCeEEECHHHHHHHHHhccc-----cchhhcccc-----ccc--cccccccceeccCc
Q 002559 462 FSLAVCKLVEGSLLMKDD---TDPLYQVHDMVSLYLDSKTND-----SIQMLINGL-----KAE--EIAFICPWFLIFGK 526 (908)
Q Consensus 462 ~e~~l~~Lv~rsLl~~~~---~~~~~~mHdLVr~~a~~~~~e-----~~~~i~~~~-----~~~--~~~~~~~~~~~~~~ 526 (908)
+..++++|+++||+.... ...+|.|||+||++|..++.+ +. .++... .++ .....++.....+.
T Consensus 456 G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~-~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~ 534 (889)
T KOG4658|consen 456 GYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEEN-QIVSDGVGLSEIPQVKSWNSVRRMSLMNNK 534 (889)
T ss_pred hHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccccc-eEEECCcCccccccccchhheeEEEEeccc
Confidence 789999999999999875 346899999999999999983 33 223221 010 00000111111111
Q ss_pred h-hhh-ccccccccchhccccchhhHhhHHHHHHhhccCCccCEEEecC-ccccccccccccceeccCCCCcccc----c
Q 002559 527 E-NIK-NIAEEKVELSLSVSEEKLVIITIEAILQALMASKSISELEVSR-ICFSGILGPRIADLISRDSQSLTVV----S 599 (908)
Q Consensus 527 ~-~~~-~~~~~~l~~ll~~~~~~~~~~~l~~~~~~l~~l~~LrvLdLs~-~~~~~~LP~~I~~L~~L~~l~l~~~----~ 599 (908)
- ... .....++++++...... ........+|..++.|||||||+ ..+.+ ||..|++|.||+||++..+ +
T Consensus 535 ~~~~~~~~~~~~L~tLll~~n~~---~l~~is~~ff~~m~~LrVLDLs~~~~l~~-LP~~I~~Li~LryL~L~~t~I~~L 610 (889)
T KOG4658|consen 535 IEHIAGSSENPKLRTLLLQRNSD---WLLEISGEFFRSLPLLRVLDLSGNSSLSK-LPSSIGELVHLRYLDLSDTGISHL 610 (889)
T ss_pred hhhccCCCCCCccceEEEeecch---hhhhcCHHHHhhCcceEEEECCCCCccCc-CChHHhhhhhhhcccccCCCcccc
Confidence 1 111 11122455555444332 11112344688999999999995 66778 9999999999999977654 4
Q ss_pred hhhHhhh
Q 002559 600 AEAITNI 606 (908)
Q Consensus 600 ~~~l~~l 606 (908)
|..+.++
T Consensus 611 P~~l~~L 617 (889)
T KOG4658|consen 611 PSGLGNL 617 (889)
T ss_pred chHHHHH
Confidence 5555443
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=4.2e-42 Score=439.44 Aligned_cols=389 Identities=19% Similarity=0.229 Sum_probs=284.0
Q ss_pred HhhhhHHhhcHHHHHHHHHhHHHHHHHHhhHHHHhhhhhhhcccc--cccc-eecccccccHHHHHHHHHHHHHHHHHHH
Q 002559 55 IKQKHAYKLHNPQLDHQLKSLNSLIERLHPKIRKARRMVSKSKIK--NLAH-VVWTSMAGDPLRKLLNSINDDLNWWLES 131 (908)
Q Consensus 55 ~~~~~~~~~w~~qVr~~a~d~eD~ld~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~i~~~I~~I~~~l~~~~~~ 131 (908)
..-..||++.+++||++.+++++++.++... ...+.+++|+.+ ..++ .+|+.......++.|++|.+++.+...
T Consensus 100 ~v~pvfy~v~p~~v~~~~g~f~~~f~~~~~~--~~~~~~~~w~~al~~~~~~~g~~~~~~~~E~~~i~~Iv~~v~~~l~- 176 (1153)
T PLN03210 100 LVIPVFYGLDPSHVRKQTGDFGEAFEKTCQN--KTEDEKIQWKQALTDVANILGYHSQNWPNEAKMIEEIANDVLGKLN- 176 (1153)
T ss_pred eEEEEEecccHHHHhhccchHHHHHHHHhcc--cchhHHHHHHHHHHHHhCcCceecCCCCCHHHHHHHHHHHHHHhhc-
Confidence 3467899999999999999999999886432 233457888765 3333 366665556678888888888765432
Q ss_pred hhhhhhhhhHhhhccccCCccccccccCCCcCccHHHHHHHHHhcc-CCceEEEEEecCCCChHHHHHHHHhCCCCcccc
Q 002559 132 QILAQNVEKVIELTAQEVPTRLKVKAEQGYPISSKSKFLRKLLEQE-ETHQVILIVGLSGIGKSCLARQVASDPPERFVG 210 (908)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~e~~~~~l~~LL~~~-~~~~vV~I~GmgGiGKTtLA~~v~~~~~~~F~~ 210 (908)
..+ ....+..+|++++.+.+..++..+ .++++|+||||||+||||||+++|++...+|++
T Consensus 177 ----------------~~~---~~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g 237 (1153)
T PLN03210 177 ----------------LTP---SNDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQS 237 (1153)
T ss_pred ----------------ccc---CcccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCe
Confidence 111 112356789999999999988754 358999999999999999999999999999976
Q ss_pred ceEEEeeeeeeccccccCCc----ch-HHHHHHHHHHHHHHHhccccccCCCCCCHHHHHHHHHHHhccCCeeEEEecCC
Q 002559 211 GAVELGFGQWCSRAACNGSK----SD-YQKRLARKISKFLVQIGFWKKIKDENSDLEYLCCLLQEALYGKSILILLDDVW 285 (908)
Q Consensus 211 ~~f~~~v~~wv~~~~~~~s~----~~-~~~~l~~~i~~~L~~lg~~~~~~~~~~~~~~l~~~l~~~L~~kr~LLVLDDV~ 285 (908)
.+| ++- .|+......... .. ....+...+...+.. ......... ..+++.+.+||+||||||||
T Consensus 238 ~vf-v~~-~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~-----~~~~~~~~~----~~~~~~L~~krvLLVLDdv~ 306 (1153)
T PLN03210 238 SVF-IDR-AFISKSMEIYSSANPDDYNMKLHLQRAFLSEILD-----KKDIKIYHL----GAMEERLKHRKVLIFIDDLD 306 (1153)
T ss_pred EEE-eec-cccccchhhcccccccccchhHHHHHHHHHHHhC-----CCCcccCCH----HHHHHHHhCCeEEEEEeCCC
Confidence 554 331 233221000000 00 011222222221110 111111122 45778899999999999999
Q ss_pred chhHHHHHhh---hcCCCcEEEEEccchhhhhhcccce---e-cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhHh
Q 002559 286 EQDIVERFAK---LYDNDCKYLVTTRNEAVYEITEAEK---V-ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERC 358 (908)
Q Consensus 286 ~~~~~e~l~~---~~~~gsrILVTTR~~~va~~~~~~~---~-~L~~~ea~~Lf~~~~~~~~~~~~~~l~~i~~~Iv~~c 358 (908)
+.++|+.+.. ++++||+||||||++.++..++... + .|++++||+||++.++... .+++++.+++++|+++|
T Consensus 307 ~~~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~-~~~~~~~~l~~~iv~~c 385 (1153)
T PLN03210 307 DQDVLDALAGQTQWFGSGSRIIVITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKN-SPPDGFMELASEVALRA 385 (1153)
T ss_pred CHHHHHHHHhhCccCCCCcEEEEEeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCC-CCcHHHHHHHHHHHHHh
Confidence 9999998874 4578999999999999987654433 3 6899999999999998653 34567889999999999
Q ss_pred CCchhhHhHhhhhhhccCCHHHHHHHHHHhchhhcCCCCCCCccchhhhcccccccchhhhhhccCcH-HHHHHHHHhhh
Q 002559 359 GHHPLTVAVMGKALRKELRSEKWEKAITDLSTFATCAPGPVSYVNEKEAENTLTIFGSFEFSLEAMPR-DSRRLFIALAA 437 (908)
Q Consensus 359 gGLPLAI~~ig~~L~~~~~~~eW~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~I~~~L~lSy~~L~~-~~K~cfl~lsi 437 (908)
+|+||||+++|++|+++ +..+|++++++|+.... ..|..+|++||++|++ ..|.||+++|+
T Consensus 386 ~GLPLAl~vlgs~L~~k-~~~~W~~~l~~L~~~~~-----------------~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ 447 (1153)
T PLN03210 386 GNLPLGLNVLGSYLRGR-DKEDWMDMLPRLRNGLD-----------------GKIEKTLRVSYDGLNNKKDKAIFRHIAC 447 (1153)
T ss_pred CCCcHHHHHHHHHHcCC-CHHHHHHHHHHHHhCcc-----------------HHHHHHHHHhhhccCccchhhhhheehh
Confidence 99999999999999976 68999999999875320 2688899999999987 48999999999
Q ss_pred ccCCCCCCHHHHHHHHHHHhhcchHHHHHHHHHHcCCccccCCCCeEEECHHHHHHHHHhcccc
Q 002559 438 LSWAEPVPEACLEAIWSILVQKSLFSLAVCKLVEGSLLMKDDTDPLYQVHDMVSLYLDSKTNDS 501 (908)
Q Consensus 438 Fp~~~~i~~~~L~~lW~a~g~~~~~e~~l~~Lv~rsLl~~~~~~~~~~mHdLVr~~a~~~~~e~ 501 (908)
||.+..++ . +..|.+.+.. .++..++.|+++|||+..++ +|.|||++|+++++++.++
T Consensus 448 ff~~~~~~--~-v~~~l~~~~~-~~~~~l~~L~~ksLi~~~~~--~~~MHdLl~~~~r~i~~~~ 505 (1153)
T PLN03210 448 LFNGEKVN--D-IKLLLANSDL-DVNIGLKNLVDKSLIHVRED--IVEMHSLLQEMGKEIVRAQ 505 (1153)
T ss_pred hcCCCCHH--H-HHHHHHhcCC-CchhChHHHHhcCCEEEcCC--eEEhhhHHHHHHHHHHHhh
Confidence 99887553 3 4455554432 24567999999999987643 7999999999999987654
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=7.8e-38 Score=342.73 Aligned_cols=269 Identities=28% Similarity=0.449 Sum_probs=199.9
Q ss_pred ccHHHHHHHHHhc-cCCceEEEEEecCCCChHHHHHHHHhC--CCCccccceEEEeeeeeeccccccCCcchHHHHHHHH
Q 002559 164 SSKSKFLRKLLEQ-EETHQVILIVGLSGIGKSCLARQVASD--PPERFVGGAVELGFGQWCSRAACNGSKSDYQKRLARK 240 (908)
Q Consensus 164 e~~~~~l~~LL~~-~~~~~vV~I~GmgGiGKTtLA~~v~~~--~~~~F~~~~f~~~v~~wv~~~~~~~s~~~~~~~l~~~ 240 (908)
+...+.|...|.. ..+.++|+|+||||+||||||.+++++ .+.+| ++++|+++.... +. ..+...
T Consensus 2 e~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f-~~v~wv~~~~~~-------~~----~~~~~~ 69 (287)
T PF00931_consen 2 EKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRF-DGVIWVSLSKNP-------SL----EQLLEQ 69 (287)
T ss_dssp HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCC-TEEEEEEEES-S-------CC----HHHHHH
T ss_pred HHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeeccccccccccc-cccccccccccc-------cc----cccccc
Confidence 4556666665554 456999999999999999999999998 67889 788888875321 22 445555
Q ss_pred HHHHHHHhccccccCCCCCCHHHHHHHHHHHhccCCeeEEEecCCchhHHHHHhhhc---CCCcEEEEEccchhhhhhcc
Q 002559 241 ISKFLVQIGFWKKIKDENSDLEYLCCLLQEALYGKSILILLDDVWEQDIVERFAKLY---DNDCKYLVTTRNEAVYEITE 317 (908)
Q Consensus 241 i~~~L~~lg~~~~~~~~~~~~~~l~~~l~~~L~~kr~LLVLDDV~~~~~~e~l~~~~---~~gsrILVTTR~~~va~~~~ 317 (908)
|...+ +..........+.+.....+.+.|.++++||||||||+...|+.+...+ +.||+||||||+..++...+
T Consensus 70 i~~~l---~~~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~ 146 (287)
T PF00931_consen 70 ILRQL---GEPDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLG 146 (287)
T ss_dssp HHHHH---TCC-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHH
T ss_pred ccccc---cccccccccccccccccccchhhhccccceeeeeeecccccccccccccccccccccccccccccccccccc
Confidence 54443 2110111244588889999999999999999999999999998877544 45899999999999987665
Q ss_pred c--cee---cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhHhCCchhhHhHhhhhhhccCCHHHHHHHHHHhchhh
Q 002559 318 A--EKV---ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGHHPLTVAVMGKALRKELRSEKWEKAITDLSTFA 392 (908)
Q Consensus 318 ~--~~~---~L~~~ea~~Lf~~~~~~~~~~~~~~l~~i~~~Iv~~cgGLPLAI~~ig~~L~~~~~~~eW~~~l~~L~~~~ 392 (908)
. ..+ +|+.+||++||.+.++.......+..++.+++|+++|+|+||||.++|++|+.+.+..+|..+++++....
T Consensus 147 ~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~ 226 (287)
T PF00931_consen 147 GTDKVIELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSL 226 (287)
T ss_dssp SCEEEEECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 3 222 79999999999999876653334556688999999999999999999999975546789999999987654
Q ss_pred cCCCCCCCccchhhhcccccccchhhhhhccCcHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHhh
Q 002559 393 TCAPGPVSYVNEKEAENTLTIFGSFEFSLEAMPRDSRRLFIALAALSWAEPVPEACLEAIWSILVQ 458 (908)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~I~~~L~lSy~~L~~~~K~cfl~lsiFp~~~~i~~~~L~~lW~a~g~ 458 (908)
....+ ....++.++.+||+.||++.|+||+|||+||.++.|+.+.++.+|.++|.
T Consensus 227 ~~~~~-----------~~~~~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~ 281 (287)
T PF00931_consen 227 RESRD-----------YDRSVFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGF 281 (287)
T ss_dssp TCSSG-----------SCHHHHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HH
T ss_pred ccccc-----------ccccccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCC
Confidence 32111 22478889999999999999999999999999999999999999999875
No 4
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.47 E-value=4.9e-12 Score=160.53 Aligned_cols=279 Identities=14% Similarity=0.184 Sum_probs=171.0
Q ss_pred HHhccCCceEEEEEecCCCChHHHHHHHHhCCCCccccceEEEeeeeeeccccccCCcchHHHHHHHHHHHHHHHhcccc
Q 002559 173 LLEQEETHQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACNGSKSDYQKRLARKISKFLVQIGFWK 252 (908)
Q Consensus 173 LL~~~~~~~vV~I~GmgGiGKTtLA~~v~~~~~~~F~~~~f~~~v~~wv~~~~~~~s~~~~~~~l~~~i~~~L~~lg~~~ 252 (908)
.|......+++.|+|++|.||||++..+.++. . .+.|++++. .+.....++..++..+.......
T Consensus 25 ~l~~~~~~~~~~v~apaG~GKTtl~~~~~~~~----~-~~~w~~l~~----------~d~~~~~f~~~l~~~l~~~~~~~ 89 (903)
T PRK04841 25 KLSGANNYRLVLVTSPAGYGKTTLISQWAAGK----N-NLGWYSLDE----------SDNQPERFASYLIAALQQATNGH 89 (903)
T ss_pred HHhcccCCCeEEEECCCCCCHHHHHHHHHHhC----C-CeEEEecCc----------ccCCHHHHHHHHHHHHHHhcCcc
Confidence 34444567899999999999999999988643 2 466666532 22223445555655554322110
Q ss_pred --cc-----CCCCCCHHHHHHHHHHHhc--cCCeeEEEecCCch------hHHHHHhhhcCCCcEEEEEccchhhhhhc-
Q 002559 253 --KI-----KDENSDLEYLCCLLQEALY--GKSILILLDDVWEQ------DIVERFAKLYDNDCKYLVTTRNEAVYEIT- 316 (908)
Q Consensus 253 --~~-----~~~~~~~~~l~~~l~~~L~--~kr~LLVLDDV~~~------~~~e~l~~~~~~gsrILVTTR~~~va~~~- 316 (908)
.. .....+.......+...+. +.+++|||||+... +.+..+....+++.++|||||...-....
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~~~~~~ 169 (903)
T PRK04841 90 CSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPPLGIAN 169 (903)
T ss_pred cchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCCCchHh
Confidence 00 0111233334444444443 57899999999753 23344445557788999999985221110
Q ss_pred ----------ccceecCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhHhCCchhhHhHhhhhhhccCCHHHHHHHHH
Q 002559 317 ----------EAEKVELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGHHPLTVAVMGKALRKELRSEKWEKAIT 386 (908)
Q Consensus 317 ----------~~~~~~L~~~ea~~Lf~~~~~~~~~~~~~~l~~i~~~Iv~~cgGLPLAI~~ig~~L~~~~~~~eW~~~l~ 386 (908)
+....+|+.+|+.++|....+. +-..+....|.+.|+|+|+++..++..+...... ......
T Consensus 170 l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~------~~~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~--~~~~~~ 241 (903)
T PRK04841 170 LRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSS------PIEAAESSRLCDDVEGWATALQLIALSARQNNSS--LHDSAR 241 (903)
T ss_pred HHhcCcceecCHHhCCCCHHHHHHHHHhccCC------CCCHHHHHHHHHHhCChHHHHHHHHHHHhhCCCc--hhhhhH
Confidence 1111279999999988765432 1223667899999999999999998877643210 001111
Q ss_pred HhchhhcCCCCCCCccchhhhcccccccchhh-hhhccCcHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHhhcchHHHH
Q 002559 387 DLSTFATCAPGPVSYVNEKEAENTLTIFGSFE-FSLEAMPRDSRRLFIALAALSWAEPVPEACLEAIWSILVQKSLFSLA 465 (908)
Q Consensus 387 ~L~~~~~~~~~~~~~~~~~~~~~~~~I~~~L~-lSy~~L~~~~K~cfl~lsiFp~~~~i~~~~L~~lW~a~g~~~~~e~~ 465 (908)
.+... + . ..+...|. -.++.||++.+..++.+|+++ .++.+.+..+. +.......
T Consensus 242 ~~~~~----~-------~------~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~---~~~~~l~~~l~----~~~~~~~~ 297 (903)
T PRK04841 242 RLAGI----N-------A------SHLSDYLVEEVLDNVDLETRHFLLRCSVLR---SMNDALIVRVT----GEENGQMR 297 (903)
T ss_pred hhcCC----C-------c------hhHHHHHHHHHHhcCCHHHHHHHHHhcccc---cCCHHHHHHHc----CCCcHHHH
Confidence 11000 0 0 12333332 347899999999999999986 34544433222 23445788
Q ss_pred HHHHHHcCCccc-c-CCCCeEEECHHHHHHHHHhc
Q 002559 466 VCKLVEGSLLMK-D-DTDPLYQVHDMVSLYLDSKT 498 (908)
Q Consensus 466 l~~Lv~rsLl~~-~-~~~~~~~mHdLVr~~a~~~~ 498 (908)
++.|.+.+++.. . ++..+|+.|++++++++...
T Consensus 298 L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 298 LEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRC 332 (903)
T ss_pred HHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHH
Confidence 999999999753 2 33458999999999998875
No 5
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.24 E-value=1.8e-09 Score=127.82 Aligned_cols=287 Identities=17% Similarity=0.230 Sum_probs=183.8
Q ss_pred HHHHHhccCCceEEEEEecCCCChHHHHHHHHhCCCCccccceEEEeeeeeeccccccCCcchHHHHHHHHHHHHHHHhc
Q 002559 170 LRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACNGSKSDYQKRLARKISKFLVQIG 249 (908)
Q Consensus 170 l~~LL~~~~~~~vV~I~GmgGiGKTtLA~~v~~~~~~~F~~~~f~~~v~~wv~~~~~~~s~~~~~~~l~~~i~~~L~~lg 249 (908)
+...|....+.+.+.|..++|.|||||+.+++....+. ..+-|++++ ..+.....+.+.++..+.+.-
T Consensus 27 L~~~L~~~~~~RL~li~APAGfGKttl~aq~~~~~~~~--~~v~Wlsld----------e~dndp~rF~~yLi~al~~~~ 94 (894)
T COG2909 27 LLDRLRRANDYRLILISAPAGFGKTTLLAQWRELAADG--AAVAWLSLD----------ESDNDPARFLSYLIAALQQAT 94 (894)
T ss_pred HHHHHhcCCCceEEEEeCCCCCcHHHHHHHHHHhcCcc--cceeEeecC----------CccCCHHHHHHHHHHHHHHhC
Confidence 33444455578999999999999999999998744433 224455443 333344566666655554321
Q ss_pred ccc-------ccCCCCCCHHHHHHHHHHHhcc--CCeeEEEecCC---ch---hHHHHHhhhcCCCcEEEEEccchhhhh
Q 002559 250 FWK-------KIKDENSDLEYLCCLLQEALYG--KSILILLDDVW---EQ---DIVERFAKLYDNDCKYLVTTRNEAVYE 314 (908)
Q Consensus 250 ~~~-------~~~~~~~~~~~l~~~l~~~L~~--kr~LLVLDDV~---~~---~~~e~l~~~~~~gsrILVTTR~~~va~ 314 (908)
... .......+...+...+..-+.. ++..+||||.. ++ +.++.+....|++-.+|||||+..-..
T Consensus 95 p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~l~ 174 (894)
T COG2909 95 PTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQLG 174 (894)
T ss_pred ccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCCCc
Confidence 100 0111222555566666665543 68999999975 33 345666677788999999999984332
Q ss_pred hc-----------ccceecCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhHhCCchhhHhHhhhhhhccCCHHHHHH
Q 002559 315 IT-----------EAEKVELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGHHPLTVAVMGKALRKELRSEKWEK 383 (908)
Q Consensus 315 ~~-----------~~~~~~L~~~ea~~Lf~~~~~~~~~~~~~~l~~i~~~Iv~~cgGLPLAI~~ig~~L~~~~~~~eW~~ 383 (908)
.. +.....|+.+|+.++|....+ .+-....++.+.+...|.+-|+..++=.++++.+.+.-..
T Consensus 175 la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~------l~Ld~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~q~~~ 248 (894)
T COG2909 175 LARLRLRDELLEIGSEELRFDTEEAAAFLNDRGS------LPLDAADLKALYDRTEGWAAALQLIALALRNNTSAEQSLR 248 (894)
T ss_pred ccceeehhhHHhcChHhhcCChHHHHHHHHHcCC------CCCChHHHHHHHhhcccHHHHHHHHHHHccCCCcHHHHhh
Confidence 21 112226899999998765432 2223466789999999999999999988884433322222
Q ss_pred HHHHhchhhcCCCCCCCccchhhhcccccccchhhhhhccCcHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHhhcchHH
Q 002559 384 AITDLSTFATCAPGPVSYVNEKEAENTLTIFGSFEFSLEAMPRDSRRLFIALAALSWAEPVPEACLEAIWSILVQKSLFS 463 (908)
Q Consensus 384 ~l~~L~~~~~~~~~~~~~~~~~~~~~~~~I~~~L~lSy~~L~~~~K~cfl~lsiFp~~~~i~~~~L~~lW~a~g~~~~~e 463 (908)
.++....... +| ..+--++.||+++|..++-+|+++. +.. .+-.+..+.+-+.
T Consensus 249 ~LsG~~~~l~------dY--------------L~eeVld~Lp~~l~~FLl~~svl~~---f~~----eL~~~Ltg~~ng~ 301 (894)
T COG2909 249 GLSGAASHLS------DY--------------LVEEVLDRLPPELRDFLLQTSVLSR---FND----ELCNALTGEENGQ 301 (894)
T ss_pred hccchHHHHH------HH--------------HHHHHHhcCCHHHHHHHHHHHhHHH---hhH----HHHHHHhcCCcHH
Confidence 1111101000 00 0123468999999999999999854 222 2333334455577
Q ss_pred HHHHHHHHcCCccc--cCCCCeEEECHHHHHHHHHhcccc
Q 002559 464 LAVCKLVEGSLLMK--DDTDPLYQVHDMVSLYLDSKTNDS 501 (908)
Q Consensus 464 ~~l~~Lv~rsLl~~--~~~~~~~~mHdLVr~~a~~~~~e~ 501 (908)
..+++|.+++|+-. .++...|+.|.|..+|++.+....
T Consensus 302 amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~~ 341 (894)
T COG2909 302 AMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQRE 341 (894)
T ss_pred HHHHHHHhCCCceeeecCCCceeehhHHHHHHHHhhhccc
Confidence 88999999999874 466779999999999999887664
No 6
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.91 E-value=2e-07 Score=107.14 Aligned_cols=283 Identities=14% Similarity=0.111 Sum_probs=156.0
Q ss_pred cccCCCcCccHHHHHHHHHhc---cCCceEEEEEecCCCChHHHHHHHHhCCCCcc-ccceEEEeeeeeeccccccCCcc
Q 002559 156 KAEQGYPISSKSKFLRKLLEQ---EETHQVILIVGLSGIGKSCLARQVASDPPERF-VGGAVELGFGQWCSRAACNGSKS 231 (908)
Q Consensus 156 ~~~~~~g~e~~~~~l~~LL~~---~~~~~vV~I~GmgGiGKTtLA~~v~~~~~~~F-~~~~f~~~v~~wv~~~~~~~s~~ 231 (908)
.|+..+||+++.+.+...+.. +.....+.|+|++|+|||++++.++++..... ....++++... .
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~---------~-- 96 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQI---------D-- 96 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCc---------C--
Confidence 345667899888888888744 22356678999999999999999998765432 11233332210 1
Q ss_pred hHHHHHHHHHHHHHHHhccccccCCCCCCHHHHHHHHHHHhcc--CCeeEEEecCCchh------HHHHHhhhcC--CCc
Q 002559 232 DYQKRLARKISKFLVQIGFWKKIKDENSDLEYLCCLLQEALYG--KSILILLDDVWEQD------IVERFAKLYD--NDC 301 (908)
Q Consensus 232 ~~~~~l~~~i~~~L~~lg~~~~~~~~~~~~~~l~~~l~~~L~~--kr~LLVLDDV~~~~------~~e~l~~~~~--~gs 301 (908)
.....++..+...+... .......+.++....+.+.+.. +..+||||+++... .+..+..+.. .++
T Consensus 97 ~~~~~~~~~i~~~l~~~----~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~ 172 (394)
T PRK00411 97 RTRYAIFSEIARQLFGH----PPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGA 172 (394)
T ss_pred CCHHHHHHHHHHHhcCC----CCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCC
Confidence 11234445554433210 0111222566777777777754 46899999998642 3444443322 233
Q ss_pred E--EEEEccchhhhhh--------ccccee---cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhH----hCCchhh
Q 002559 302 K--YLVTTRNEAVYEI--------TEAEKV---ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLER----CGHHPLT 364 (908)
Q Consensus 302 r--ILVTTR~~~va~~--------~~~~~~---~L~~~ea~~Lf~~~~~~~~~~~~~~l~~i~~~Iv~~----cgGLPLA 364 (908)
+ +|.++....+... .+...+ +++.++..+++...+.. +.....-.++..+.|++. .|..+.|
T Consensus 173 ~v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~-~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a 251 (394)
T PRK00411 173 RIGVIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEE-GFYPGVVDDEVLDLIADLTAREHGDARVA 251 (394)
T ss_pred eEEEEEEECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHh-hcccCCCCHhHHHHHHHHHHHhcCcHHHH
Confidence 3 5666655443322 222222 78888888888776632 211111112333444444 4667778
Q ss_pred HhHhhhhhh----c---cCCHHHHHHHHHHhchhhcCCCCCCCccchhhhcccccccchhhhhhccCcHHHHHHHHHhhh
Q 002559 365 VAVMGKALR----K---ELRSEKWEKAITDLSTFATCAPGPVSYVNEKEAENTLTIFGSFEFSLEAMPRDSRRLFIALAA 437 (908)
Q Consensus 365 I~~ig~~L~----~---~~~~~eW~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~I~~~L~lSy~~L~~~~K~cfl~lsi 437 (908)
+.++-.+.. . .-+.+....+++.... ..+.-.+..||.+.|..+..++-
T Consensus 252 ~~ll~~a~~~a~~~~~~~I~~~~v~~a~~~~~~------------------------~~~~~~~~~L~~~~k~~L~ai~~ 307 (394)
T PRK00411 252 IDLLRRAGLIAEREGSRKVTEEDVRKAYEKSEI------------------------VHLSEVLRTLPLHEKLLLRAIVR 307 (394)
T ss_pred HHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHHH------------------------HHHHHHHhcCCHHHHHHHHHHHH
Confidence 777644321 1 1234555555555421 11235688999999888777664
Q ss_pred ccC--CCCCCHHHHHHHHH----HHhh----cchHHHHHHHHHHcCCcccc
Q 002559 438 LSW--AEPVPEACLEAIWS----ILVQ----KSLFSLAVCKLVEGSLLMKD 478 (908)
Q Consensus 438 Fp~--~~~i~~~~L~~lW~----a~g~----~~~~e~~l~~Lv~rsLl~~~ 478 (908)
.-. ...+....+...-. ..|. ......+++.|.+.++|...
T Consensus 308 ~~~~~~~~~~~~~i~~~y~~l~~~~~~~~~~~~~~~~~l~~L~~~glI~~~ 358 (394)
T PRK00411 308 LLKKGGDEVTTGEVYEEYKELCEELGYEPRTHTRFYEYINKLDMLGIINTR 358 (394)
T ss_pred HHhcCCCcccHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHHHhcCCeEEE
Confidence 422 12344444332211 1121 13355789999999998753
No 7
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.87 E-value=1.7e-08 Score=112.03 Aligned_cols=270 Identities=16% Similarity=0.081 Sum_probs=148.9
Q ss_pred CCCcCccHHHHHHHHHhc----cCCceEEEEEecCCCChHHHHHHHHhCCCCccccceEEEeeeeeeccccccCCcchHH
Q 002559 159 QGYPISSKSKFLRKLLEQ----EETHQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACNGSKSDYQ 234 (908)
Q Consensus 159 ~~~g~e~~~~~l~~LL~~----~~~~~vV~I~GmgGiGKTtLA~~v~~~~~~~F~~~~f~~~v~~wv~~~~~~~s~~~~~ 234 (908)
..+|+++..+.+..++.. ......+.++|++|+|||+||+.+++.....+. ..+. +.....
T Consensus 5 ~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~----~~~~-----------~~~~~~ 69 (305)
T TIGR00635 5 EFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVNLK----ITSG-----------PALEKP 69 (305)
T ss_pred HHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEE----Eecc-----------chhcCc
Confidence 456777777777777653 223566889999999999999999997754331 1110 000001
Q ss_pred HHHHHHHHHHHHHhccccc-cCCCCC-CHHHHHHHHHHHhccCCeeEEEecCCchhHHHHHhhhcCCCcEEEEEccchhh
Q 002559 235 KRLARKISKFLVQIGFWKK-IKDENS-DLEYLCCLLQEALYGKSILILLDDVWEQDIVERFAKLYDNDCKYLVTTRNEAV 312 (908)
Q Consensus 235 ~~l~~~i~~~L~~lg~~~~-~~~~~~-~~~~l~~~l~~~L~~kr~LLVLDDV~~~~~~e~l~~~~~~gsrILVTTR~~~v 312 (908)
.. +...+..++...- .-++.. -.......+...+.+.+..+|+|+..+..++.. ..++.+-|..||+...+
T Consensus 70 ~~----l~~~l~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~---~~~~~~li~~t~~~~~l 142 (305)
T TIGR00635 70 GD----LAAILTNLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRL---DLPPFTLVGATTRAGML 142 (305)
T ss_pred hh----HHHHHHhcccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceee---cCCCeEEEEecCCcccc
Confidence 11 2222222221000 000000 001223456667777777788888776665542 23456677778887544
Q ss_pred hhh----cccc-ee-cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhHhCCchhhHhHhhhhhhccCCHHHHHHHHH
Q 002559 313 YEI----TEAE-KV-ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGHHPLTVAVMGKALRKELRSEKWEKAIT 386 (908)
Q Consensus 313 a~~----~~~~-~~-~L~~~ea~~Lf~~~~~~~~~~~~~~l~~i~~~Iv~~cgGLPLAI~~ig~~L~~~~~~~eW~~~l~ 386 (908)
... ++.. .+ +++.++..+++.+.+..... .-.++....|++.|+|.|-.+..++..+. ... .
T Consensus 143 ~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~---~~~~~al~~ia~~~~G~pR~~~~ll~~~~--------~~a-~ 210 (305)
T TIGR00635 143 TSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLNV---EIEPEAALEIARRSRGTPRIANRLLRRVR--------DFA-Q 210 (305)
T ss_pred CHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhCC---CcCHHHHHHHHHHhCCCcchHHHHHHHHH--------HHH-H
Confidence 332 3221 22 78999999999887764332 22346778999999999966554444321 100 0
Q ss_pred HhchhhcCCCCCCCccchhhhcccccccchhhhhhccCcHHHHHHHH-HhhhccCCCCCCHHHHHHHHHHHhh-cchHHH
Q 002559 387 DLSTFATCAPGPVSYVNEKEAENTLTIFGSFEFSLEAMPRDSRRLFI-ALAALSWAEPVPEACLEAIWSILVQ-KSLFSL 464 (908)
Q Consensus 387 ~L~~~~~~~~~~~~~~~~~~~~~~~~I~~~L~lSy~~L~~~~K~cfl-~lsiFp~~~~i~~~~L~~lW~a~g~-~~~~e~ 464 (908)
.... . . .....+ ......+..+|..++++.+..+. .++.+..+ ++..+.+ ....|. ....+.
T Consensus 211 ~~~~-----~-~---it~~~v---~~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~-~~~~~~i---a~~lg~~~~~~~~ 274 (305)
T TIGR00635 211 VRGQ-----K-I---INRDIA---LKALEMLMIDELGLDEIDRKLLSVLIEQFQGG-PVGLKTL---AAALGEDADTIED 274 (305)
T ss_pred HcCC-----C-C---cCHHHH---HHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCC-cccHHHH---HHHhCCCcchHHH
Confidence 0000 0 0 000000 01122245678899998888777 55666533 4544333 333342 334667
Q ss_pred HHH-HHHHcCCcccc
Q 002559 465 AVC-KLVEGSLLMKD 478 (908)
Q Consensus 465 ~l~-~Lv~rsLl~~~ 478 (908)
.++ .|++++||...
T Consensus 275 ~~e~~Li~~~li~~~ 289 (305)
T TIGR00635 275 VYEPYLLQIGFLQRT 289 (305)
T ss_pred hhhHHHHHcCCcccC
Confidence 778 69999999754
No 8
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.84 E-value=7.8e-07 Score=101.18 Aligned_cols=285 Identities=14% Similarity=0.145 Sum_probs=152.3
Q ss_pred ccCCCcCccHHHHHHHHHhc---cCCceEEEEEecCCCChHHHHHHHHhCCCCccc-----cceEEEeeeeeeccccccC
Q 002559 157 AEQGYPISSKSKFLRKLLEQ---EETHQVILIVGLSGIGKSCLARQVASDPPERFV-----GGAVELGFGQWCSRAACNG 228 (908)
Q Consensus 157 ~~~~~g~e~~~~~l~~LL~~---~~~~~vV~I~GmgGiGKTtLA~~v~~~~~~~F~-----~~~f~~~v~~wv~~~~~~~ 228 (908)
|+..+||+++.+.|...+.. +.....+.|+|++|+|||++++.+++....... ...+|++...
T Consensus 14 p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~--------- 84 (365)
T TIGR02928 14 PDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQI--------- 84 (365)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCC---------
Confidence 35667999988888888764 233567899999999999999999986542211 1233333211
Q ss_pred CcchHHHHHHHHHHHHHHHhccccccCCCCCCHHHHHHHHHHHhc--cCCeeEEEecCCch-----hHHHHHhhh--c--
Q 002559 229 SKSDYQKRLARKISKFLVQIGFWKKIKDENSDLEYLCCLLQEALY--GKSILILLDDVWEQ-----DIVERFAKL--Y-- 297 (908)
Q Consensus 229 s~~~~~~~l~~~i~~~L~~lg~~~~~~~~~~~~~~l~~~l~~~L~--~kr~LLVLDDV~~~-----~~~e~l~~~--~-- 297 (908)
. .....++..|...+...|. .......+..+....+.+.+. +++++||||+++.. +.+..+..+ .
T Consensus 85 ~--~~~~~~~~~i~~~l~~~~~--~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~ 160 (365)
T TIGR02928 85 L--DTLYQVLVELANQLRGSGE--EVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGD 160 (365)
T ss_pred C--CCHHHHHHHHHHHHhhcCC--CCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccC
Confidence 1 1123445555544432121 111112244555555666553 46789999999866 123334333 1
Q ss_pred -C-CCcEEEEEccchhhhh--------hccccee---cCChhhHHHHHHHHhhhc--ccccCcchHHHHHHHHhHhCCch
Q 002559 298 -D-NDCKYLVTTRNEAVYE--------ITEAEKV---ELSKDDIMEISKSILLYH--SLLAEEELPAAAESLLERCGHHP 362 (908)
Q Consensus 298 -~-~gsrILVTTR~~~va~--------~~~~~~~---~L~~~ea~~Lf~~~~~~~--~~~~~~~l~~i~~~Iv~~cgGLP 362 (908)
+ ....+|.+|....... ......+ |++.++..+++...+... ....+++..+.+..++..+.|.|
T Consensus 161 ~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~ 240 (365)
T TIGR02928 161 LDNAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDA 240 (365)
T ss_pred CCCCeEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCH
Confidence 1 2234455554443221 1111222 688888888887766421 11112233344555666777887
Q ss_pred h-hHhHhhhhh--h-----ccCCHHHHHHHHHHhchhhcCCCCCCCccchhhhcccccccchhhhhhccCcHHHHHHHHH
Q 002559 363 L-TVAVMGKAL--R-----KELRSEKWEKAITDLSTFATCAPGPVSYVNEKEAENTLTIFGSFEFSLEAMPRDSRRLFIA 434 (908)
Q Consensus 363 L-AI~~ig~~L--~-----~~~~~~eW~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~I~~~L~lSy~~L~~~~K~cfl~ 434 (908)
- |+..+-... . ..-+.+....+.+.+.. ..+.-++..||.+.+.++..
T Consensus 241 R~al~~l~~a~~~a~~~~~~~it~~~v~~a~~~~~~------------------------~~~~~~i~~l~~~~~~~l~a 296 (365)
T TIGR02928 241 RKAIDLLRVAGEIAEREGAERVTEDHVEKAQEKIEK------------------------DRLLELIRGLPTHSKLVLLA 296 (365)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHH------------------------HHHHHHHHcCCHHHHHHHHH
Confidence 4 333322211 1 11234444444444321 11235678999999877777
Q ss_pred hhhcc--CCCCCCHHHHHHHHHH--H--h----hcchHHHHHHHHHHcCCcccc
Q 002559 435 LAALS--WAEPVPEACLEAIWSI--L--V----QKSLFSLAVCKLVEGSLLMKD 478 (908)
Q Consensus 435 lsiFp--~~~~i~~~~L~~lW~a--~--g----~~~~~e~~l~~Lv~rsLl~~~ 478 (908)
+...- .+..+....+...+.. + | ....+..++..|...|||...
T Consensus 297 i~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~l~~l~~~gli~~~ 350 (365)
T TIGR02928 297 IANLAANDEDPFRTGEVYEVYKEVCEDIGVDPLTQRRISDLLNELDMLGLVEAE 350 (365)
T ss_pred HHHHHhcCCCCccHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhcCCeEEE
Confidence 66432 2333444444332221 1 1 123456789999999999864
No 9
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.83 E-value=3.3e-07 Score=99.56 Aligned_cols=173 Identities=19% Similarity=0.208 Sum_probs=99.9
Q ss_pred CceEEEEEecCCCChHHHHHHHHhCCCCccccceEEEeeeeeeccccccCCcchHHHHHHHHHHHHHHHhccccccCCCC
Q 002559 179 THQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACNGSKSDYQKRLARKISKFLVQIGFWKKIKDEN 258 (908)
Q Consensus 179 ~~~vV~I~GmgGiGKTtLA~~v~~~~~~~F~~~~f~~~v~~wv~~~~~~~s~~~~~~~l~~~i~~~L~~lg~~~~~~~~~ 258 (908)
+..++.|+|++|+|||||++.+++..... ..++. |+. .......++...+... +|. ....
T Consensus 42 ~~~~~~l~G~~G~GKTtl~~~l~~~l~~~---~~~~~----~~~------~~~~~~~~~l~~i~~~---lG~----~~~~ 101 (269)
T TIGR03015 42 REGFILITGEVGAGKTTLIRNLLKRLDQE---RVVAA----KLV------NTRVDAEDLLRMVAAD---FGL----ETEG 101 (269)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHhcCCC---CeEEe----eee------CCCCCHHHHHHHHHHH---cCC----CCCC
Confidence 35689999999999999999999886521 11111 110 1111223455555433 232 1111
Q ss_pred CCHHHHHHHHH----HH-hccCCeeEEEecCCch--hHHHHHhhhc---C-CC--cEEEEEccchhhhhhcc--------
Q 002559 259 SDLEYLCCLLQ----EA-LYGKSILILLDDVWEQ--DIVERFAKLY---D-ND--CKYLVTTRNEAVYEITE-------- 317 (908)
Q Consensus 259 ~~~~~l~~~l~----~~-L~~kr~LLVLDDV~~~--~~~e~l~~~~---~-~g--srILVTTR~~~va~~~~-------- 317 (908)
.+.......+. .. ..+++.+||+||++.. ..++.+.... . .+ ..|++|.... ......
T Consensus 102 ~~~~~~~~~l~~~l~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~ 180 (269)
T TIGR03015 102 RDKAALLRELEDFLIEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLR 180 (269)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHH
Confidence 22222233333 32 2567899999999875 3455544221 1 12 2455665433 211110
Q ss_pred ---c--cee-cCChhhHHHHHHHHhhhccccc-CcchHHHHHHHHhHhCCchhhHhHhhhhh
Q 002559 318 ---A--EKV-ELSKDDIMEISKSILLYHSLLA-EEELPAAAESLLERCGHHPLTVAVMGKAL 372 (908)
Q Consensus 318 ---~--~~~-~L~~~ea~~Lf~~~~~~~~~~~-~~~l~~i~~~Iv~~cgGLPLAI~~ig~~L 372 (908)
. ... +|+.+|..+++...+...+... ..-.++..+.|++.|+|.|..|..++..+
T Consensus 181 ~r~~~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 181 QRIIASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred hheeeeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 0 112 7999999998877765433211 22335788999999999999999988876
No 10
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.82 E-value=2.9e-08 Score=111.34 Aligned_cols=272 Identities=13% Similarity=0.080 Sum_probs=150.1
Q ss_pred cCCCcCccHHHHHHHHHhc----cCCceEEEEEecCCCChHHHHHHHHhCCCCccccceEEEeeeeeeccccccCCcchH
Q 002559 158 EQGYPISSKSKFLRKLLEQ----EETHQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACNGSKSDY 233 (908)
Q Consensus 158 ~~~~g~e~~~~~l~~LL~~----~~~~~vV~I~GmgGiGKTtLA~~v~~~~~~~F~~~~f~~~v~~wv~~~~~~~s~~~~ 233 (908)
...+|+++..+.+..++.. ......+.|+|++|+|||+||+.+++.....+. +.+.. .. ....
T Consensus 25 ~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~----~~~~~-~~-------~~~~- 91 (328)
T PRK00080 25 DEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVNIR----ITSGP-AL-------EKPG- 91 (328)
T ss_pred HHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeE----EEecc-cc-------cChH-
Confidence 4567888888888777653 233667889999999999999999998764321 11110 00 1111
Q ss_pred HHHHHHHHHHHHHHhccccc-cCCCCCC-HHHHHHHHHHHhccCCeeEEEecCCchhHHHHHhhhcCCCcEEEEEccchh
Q 002559 234 QKRLARKISKFLVQIGFWKK-IKDENSD-LEYLCCLLQEALYGKSILILLDDVWEQDIVERFAKLYDNDCKYLVTTRNEA 311 (908)
Q Consensus 234 ~~~l~~~i~~~L~~lg~~~~-~~~~~~~-~~~l~~~l~~~L~~kr~LLVLDDV~~~~~~e~l~~~~~~gsrILVTTR~~~ 311 (908)
.+...+..++...- .-++... .....+.+...+.+.+..+|+|+..+...+.. .+++.+-|..||+...
T Consensus 92 ------~l~~~l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~---~l~~~~li~at~~~~~ 162 (328)
T PRK00080 92 ------DLAAILTNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRL---DLPPFTLIGATTRAGL 162 (328)
T ss_pred ------HHHHHHHhcccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceee---cCCCceEEeecCCccc
Confidence 11122222110000 0000000 01122344555666666777776655544321 1244566777887654
Q ss_pred hhhh----ccc-cee-cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhHhCCchhhHhHhhhhhhccCCHHHHHHHH
Q 002559 312 VYEI----TEA-EKV-ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGHHPLTVAVMGKALRKELRSEKWEKAI 385 (908)
Q Consensus 312 va~~----~~~-~~~-~L~~~ea~~Lf~~~~~~~~~~~~~~l~~i~~~Iv~~cgGLPLAI~~ig~~L~~~~~~~eW~~~l 385 (908)
+... ++. ..+ +++.++..+++.+.+...... -.++....|++.|+|.|-.+..+...+ ..|....
T Consensus 163 l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~---~~~~~~~~ia~~~~G~pR~a~~~l~~~------~~~a~~~ 233 (328)
T PRK00080 163 LTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGVE---IDEEGALEIARRSRGTPRIANRLLRRV------RDFAQVK 233 (328)
T ss_pred CCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCC---cCHHHHHHHHHHcCCCchHHHHHHHHH------HHHHHHc
Confidence 4332 221 122 789999999998877654332 234778999999999995444444322 2222111
Q ss_pred HHhchhhcCCCCCCCccchhhhcccccccchhhhhhccCcHHHHHHHH-HhhhccCCCCCCHHHHHHHHHHHhh-cchHH
Q 002559 386 TDLSTFATCAPGPVSYVNEKEAENTLTIFGSFEFSLEAMPRDSRRLFI-ALAALSWAEPVPEACLEAIWSILVQ-KSLFS 463 (908)
Q Consensus 386 ~~L~~~~~~~~~~~~~~~~~~~~~~~~I~~~L~lSy~~L~~~~K~cfl-~lsiFp~~~~i~~~~L~~lW~a~g~-~~~~e 463 (908)
+. .. .....+ ......+...+..|++..+..+. .+..|+.+ ++..+.+.. ..|. ....+
T Consensus 234 ~~-~~-----------I~~~~v---~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~-~~~~~~~a~---~lg~~~~~~~ 294 (328)
T PRK00080 234 GD-GV-----------ITKEIA---DKALDMLGVDELGLDEMDRKYLRTIIEKFGGG-PVGLDTLAA---ALGEERDTIE 294 (328)
T ss_pred CC-CC-----------CCHHHH---HHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCC-ceeHHHHHH---HHCCCcchHH
Confidence 00 00 000011 12233456778899998888886 66667654 465555433 3332 23456
Q ss_pred HHHH-HHHHcCCccccC
Q 002559 464 LAVC-KLVEGSLLMKDD 479 (908)
Q Consensus 464 ~~l~-~Lv~rsLl~~~~ 479 (908)
+.++ .|++.+||+..+
T Consensus 295 ~~~e~~Li~~~li~~~~ 311 (328)
T PRK00080 295 DVYEPYLIQQGFIQRTP 311 (328)
T ss_pred HHhhHHHHHcCCcccCC
Confidence 6777 999999997543
No 11
>PF05729 NACHT: NACHT domain
Probab=98.65 E-value=1.1e-07 Score=94.73 Aligned_cols=136 Identities=24% Similarity=0.298 Sum_probs=77.4
Q ss_pred eEEEEEecCCCChHHHHHHHHhCCCCccc-----cceEEEeeeeeeccccccCCcchHHHHHHHHHHHHHHHhccccccC
Q 002559 181 QVILIVGLSGIGKSCLARQVASDPPERFV-----GGAVELGFGQWCSRAACNGSKSDYQKRLARKISKFLVQIGFWKKIK 255 (908)
Q Consensus 181 ~vV~I~GmgGiGKTtLA~~v~~~~~~~F~-----~~~f~~~v~~wv~~~~~~~s~~~~~~~l~~~i~~~L~~lg~~~~~~ 255 (908)
+++.|+|.+|+||||+++.++++...... ...||++.+.. ........+...|.....
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~l~~~l~~~~~--------- 63 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDI--------SDSNNSRSLADLLFDQLP--------- 63 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhh--------hhccccchHHHHHHHhhc---------
Confidence 57899999999999999999987653321 12334333221 111111233333332211
Q ss_pred CCCCCHHHHHHHHHHH-hccCCeeEEEecCCchhH---------H----HHHhhh-cCCCcEEEEEccchhhhh---hcc
Q 002559 256 DENSDLEYLCCLLQEA-LYGKSILILLDDVWEQDI---------V----ERFAKL-YDNDCKYLVTTRNEAVYE---ITE 317 (908)
Q Consensus 256 ~~~~~~~~l~~~l~~~-L~~kr~LLVLDDV~~~~~---------~----e~l~~~-~~~gsrILVTTR~~~va~---~~~ 317 (908)
........ .+... ...++++||||++++... + ..+... .+++++++||||...... ...
T Consensus 64 ~~~~~~~~---~~~~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~ 140 (166)
T PF05729_consen 64 ESIAPIEE---LLQELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLK 140 (166)
T ss_pred cchhhhHH---HHHHHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcC
Confidence 11111111 22222 246799999999986532 1 122221 356899999999886632 222
Q ss_pred cc---ee-cCChhhHHHHHHHHh
Q 002559 318 AE---KV-ELSKDDIMEISKSIL 336 (908)
Q Consensus 318 ~~---~~-~L~~~ea~~Lf~~~~ 336 (908)
.. .+ +|++++..+++.+.+
T Consensus 141 ~~~~~~l~~~~~~~~~~~~~~~f 163 (166)
T PF05729_consen 141 QAQILELEPFSEEDIKQYLRKYF 163 (166)
T ss_pred CCcEEEECCCCHHHHHHHHHHHh
Confidence 22 22 899999998887765
No 12
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.60 E-value=1e-07 Score=100.40 Aligned_cols=195 Identities=21% Similarity=0.213 Sum_probs=93.1
Q ss_pred CcCccHHHHHHHHHhccCCceEEEEEecCCCChHHHHHHHHhCCCCccccceEEEeeeeeeccccccCCcchHHHHH---
Q 002559 161 YPISSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACNGSKSDYQKRL--- 237 (908)
Q Consensus 161 ~g~e~~~~~l~~LL~~~~~~~vV~I~GmgGiGKTtLA~~v~~~~~~~F~~~~f~~~v~~wv~~~~~~~s~~~~~~~l--- 237 (908)
+||+.+.+.|..++..+ ..+.+.|+|+.|+|||+|++.+.+..+..-. .++|++.... ........+
T Consensus 2 ~gR~~el~~l~~~l~~~-~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~-~~~y~~~~~~--------~~~~~~~~~~~~ 71 (234)
T PF01637_consen 2 FGREKELEKLKELLESG-PSQHILLYGPRGSGKTSLLKEFINELKEKGY-KVVYIDFLEE--------SNESSLRSFIEE 71 (234)
T ss_dssp -S-HHHHHHHHHCHHH---SSEEEEEESTTSSHHHHHHHHHHHCT--EE-CCCHHCCTTB--------SHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhh-cCcEEEEEcCCcCCHHHHHHHHHHHhhhcCC-cEEEEecccc--------hhhhHHHHHHHH
Confidence 68888888888888764 3578889999999999999999997753211 1222221100 111111121
Q ss_pred ---HHHHHHHHHHhcccccc----CCCCCCHHHHHHHHHHHhc--cCCeeEEEecCCchh----H----HHHHhhhc---
Q 002559 238 ---ARKISKFLVQIGFWKKI----KDENSDLEYLCCLLQEALY--GKSILILLDDVWEQD----I----VERFAKLY--- 297 (908)
Q Consensus 238 ---~~~i~~~L~~lg~~~~~----~~~~~~~~~l~~~l~~~L~--~kr~LLVLDDV~~~~----~----~e~l~~~~--- 297 (908)
...+...+...-..... .............+.+.+. +++++||+||+.... . ...+...+
T Consensus 72 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~ 151 (234)
T PF01637_consen 72 TSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSL 151 (234)
T ss_dssp HHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhc
Confidence 11111112110000000 0011122222333333333 346999999997655 1 12222111
Q ss_pred --CCCcEEEEEccchhhhhh-----------ccccee-cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhHhCCchh
Q 002559 298 --DNDCKYLVTTRNEAVYEI-----------TEAEKV-ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGHHPL 363 (908)
Q Consensus 298 --~~gsrILVTTR~~~va~~-----------~~~~~~-~L~~~ea~~Lf~~~~~~~~~~~~~~l~~i~~~Iv~~cgGLPL 363 (908)
.....+|+++....+... .....+ +|+.+++++++...+... ... +...+..++|...+||+|.
T Consensus 152 ~~~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~~~-~~~~~~~~~i~~~~gG~P~ 229 (234)
T PF01637_consen 152 LSQQNVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-IKL-PFSDEDIEEIYSLTGGNPR 229 (234)
T ss_dssp ---TTEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC--------HHHHHHHHHHHTT-HH
T ss_pred cccCCceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-hcc-cCCHHHHHHHHHHhCCCHH
Confidence 123334444433333221 111122 899999999988766433 111 2234667999999999998
Q ss_pred hHhH
Q 002559 364 TVAV 367 (908)
Q Consensus 364 AI~~ 367 (908)
.|..
T Consensus 230 ~l~~ 233 (234)
T PF01637_consen 230 YLQE 233 (234)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 8764
No 13
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.45 E-value=2.1e-06 Score=94.84 Aligned_cols=158 Identities=22% Similarity=0.248 Sum_probs=98.6
Q ss_pred HHHHHHHHHhccCCceEEEEEecCCCChHHHHHHHHhCCCCccccceEEEeeeeeeccccccCCcchHHHHHHHHHHHHH
Q 002559 166 KSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACNGSKSDYQKRLARKISKFL 245 (908)
Q Consensus 166 ~~~~l~~LL~~~~~~~vV~I~GmgGiGKTtLA~~v~~~~~~~F~~~~f~~~v~~wv~~~~~~~s~~~~~~~l~~~i~~~L 245 (908)
..+.|..+++.. .+...-+||++|+||||||+.++......|. -+++ .....+++-..+ +.
T Consensus 35 ~~~~lrr~v~~~-~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~----------~~sA------v~~gvkdlr~i~-e~- 95 (436)
T COG2256 35 EGKPLRRAVEAG-HLHSMILWGPPGTGKTTLARLIAGTTNAAFE----------ALSA------VTSGVKDLREII-EE- 95 (436)
T ss_pred CCchHHHHHhcC-CCceeEEECCCCCCHHHHHHHHHHhhCCceE----------Eecc------ccccHHHHHHHH-HH-
Confidence 345666666654 4566669999999999999999997776654 1111 111112221111 10
Q ss_pred HHhccccccCCCCCCHHHHHHHHHHHhccCCeeEEEecCC--chhHHHHHhhhcCCCcEEEE--Eccchhh------hhh
Q 002559 246 VQIGFWKKIKDENSDLEYLCCLLQEALYGKSILILLDDVW--EQDIVERFAKLYDNDCKYLV--TTRNEAV------YEI 315 (908)
Q Consensus 246 ~~lg~~~~~~~~~~~~~~l~~~l~~~L~~kr~LLVLDDV~--~~~~~e~l~~~~~~gsrILV--TTR~~~v------a~~ 315 (908)
.-+....|++.+|++|.|. +..+-+.|++..-+|.-|+| ||-|+.. ...
T Consensus 96 ---------------------a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~vE~G~iilIGATTENPsF~ln~ALlSR 154 (436)
T COG2256 96 ---------------------ARKNRLLGRRTILFLDEIHRFNKAQQDALLPHVENGTIILIGATTENPSFELNPALLSR 154 (436)
T ss_pred ---------------------HHHHHhcCCceEEEEehhhhcChhhhhhhhhhhcCCeEEEEeccCCCCCeeecHHHhhh
Confidence 0122344889999999996 66788889988888988777 7777642 123
Q ss_pred ccccee-cCChhhHHHHHHHHhhhcccccC----cchHHHHHHHHhHhCCchh
Q 002559 316 TEAEKV-ELSKDDIMEISKSILLYHSLLAE----EELPAAAESLLERCGHHPL 363 (908)
Q Consensus 316 ~~~~~~-~L~~~ea~~Lf~~~~~~~~~~~~----~~l~~i~~~Iv~~cgGLPL 363 (908)
+..... +|+.+|-.+++.+.+......-. .-.++..+.+++.++|---
T Consensus 155 ~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R 207 (436)
T COG2256 155 ARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDAR 207 (436)
T ss_pred hheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHH
Confidence 333333 89999998888774432221111 1123566778888888643
No 14
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.43 E-value=8.1e-07 Score=98.68 Aligned_cols=290 Identities=18% Similarity=0.191 Sum_probs=178.9
Q ss_pred CceEEEEEecCCCChHHHHHHHHhCCCCccccceEEEeeeeeeccccccCCcchHHHHHHHHHHHHHHHhccccccCCCC
Q 002559 179 THQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACNGSKSDYQKRLARKISKFLVQIGFWKKIKDEN 258 (908)
Q Consensus 179 ~~~vV~I~GmgGiGKTtLA~~v~~~~~~~F~~~~f~~~v~~wv~~~~~~~s~~~~~~~l~~~i~~~L~~lg~~~~~~~~~ 258 (908)
..+.+.++|.|||||||++-.+.. .+..|.+++.+++...- +.+. .+.-.+.. ..| ....
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~-~~~~~~~~v~~vdl~pi--------tD~~---~v~~~~ag---~~g----l~~~- 72 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH-AASEYADGVAFVDLAPI--------TDPA---LVFPTLAG---ALG----LHVQ- 72 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh-Hhhhcccceeeeecccc--------Cchh---HhHHHHHh---hcc----cccc-
Confidence 368999999999999999999999 78889988877766432 2211 11111111 112 1111
Q ss_pred CCHHHHHHHHHHHhccCCeeEEEecCCchhH-HHHHhhhcCC---CcEEEEEccchhhhhhccccee-cCCh-hhHHHHH
Q 002559 259 SDLEYLCCLLQEALYGKSILILLDDVWEQDI-VERFAKLYDN---DCKYLVTTRNEAVYEITEAEKV-ELSK-DDIMEIS 332 (908)
Q Consensus 259 ~~~~~l~~~l~~~L~~kr~LLVLDDV~~~~~-~e~l~~~~~~---gsrILVTTR~~~va~~~~~~~~-~L~~-~ea~~Lf 332 (908)
.-+.....+.....++|.++|+||..+... ...+.-.+-. .-.|+.|+|.......-....+ +|+. +++.++|
T Consensus 73 -~g~~~~~~~~~~~~~rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l~~ge~~~~~~~L~~~d~a~~lf 151 (414)
T COG3903 73 -PGDSAVDTLVRRIGDRRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAILVAGEVHRRVPSLSLFDEAIELF 151 (414)
T ss_pred -cchHHHHHHHHHHhhhhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhcccccccccCCccccCCchhHHH
Confidence 112234456667778999999999876532 2222212222 2378889998865543333333 4543 3678887
Q ss_pred HHHhhhccc--ccCcchHHHHHHHHhHhCCchhhHhHhhhhhhccCCHHHHHHHHHHhchhhcCCCCCCCccchhhhccc
Q 002559 333 KSILLYHSL--LAEEELPAAAESLLERCGHHPLTVAVMGKALRKELRSEKWEKAITDLSTFATCAPGPVSYVNEKEAENT 410 (908)
Q Consensus 333 ~~~~~~~~~--~~~~~l~~i~~~Iv~~cgGLPLAI~~ig~~L~~~~~~~eW~~~l~~L~~~~~~~~~~~~~~~~~~~~~~ 410 (908)
...+..... .-.........+|.++..|.|++|..+++..+.- ...+-...++.--...... . .......
T Consensus 152 ~~ra~~~~~~f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl-~~~~i~~~L~drf~ll~~~-~------r~a~~~~ 223 (414)
T COG3903 152 VCRAVLVALSFWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSL-SPDEIAAGLRDRFRLLTGG-A------RLAVLRQ 223 (414)
T ss_pred HHHHHHhccceeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhc-CHHHHHHHHhhHHHHHhcc-c------ccchhHH
Confidence 655543322 2233445778999999999999999999988853 2233322222211111110 0 0111222
Q ss_pred ccccchhhhhhccCcHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHhhcc-----hHHHHHHHHHHcCCccccC--CCCe
Q 002559 411 LTIFGSFEFSLEAMPRDSRRLFIALAALSWAEPVPEACLEAIWSILVQKS-----LFSLAVCKLVEGSLLMKDD--TDPL 483 (908)
Q Consensus 411 ~~I~~~L~lSy~~L~~~~K~cfl~lsiFp~~~~i~~~~L~~lW~a~g~~~-----~~e~~l~~Lv~rsLl~~~~--~~~~ 483 (908)
.....+|..||.-|..-.+-.|.-++.|...+.- + -..|.+.|... .....+..|+++|++...+ +.-.
T Consensus 224 qtl~asl~ws~~lLtgwe~~~~~rLa~~~g~f~~--~--l~~~~a~g~~~~~~~y~~~~a~~ll~~kslv~a~~~~~~a~ 299 (414)
T COG3903 224 QTLRASLDWSYALLTGWERALFGRLAVFVGGFDL--G--LALAVAAGADVDVPRYLVLLALTLLVDKSLVVALDLLGRAR 299 (414)
T ss_pred HhccchhhhhhHhhhhHHHHHhcchhhhhhhhcc--c--HHHHHhcCCccccchHHHHHHHHHHhhccchhhhhhhhHHH
Confidence 3667889999999999999999999999766533 3 34566655432 2335677899999886643 2336
Q ss_pred EEECHHHHHHHHHhcccc
Q 002559 484 YQVHDMVSLYLDSKTNDS 501 (908)
Q Consensus 484 ~~mHdLVr~~a~~~~~e~ 501 (908)
|+.-+-++.|+..+..+.
T Consensus 300 ~Rl~eT~r~YalaeL~r~ 317 (414)
T COG3903 300 YRLLETGRRYALAELHRS 317 (414)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 777778888888777654
No 15
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.33 E-value=6.3e-06 Score=95.41 Aligned_cols=171 Identities=19% Similarity=0.217 Sum_probs=99.8
Q ss_pred CCCcCccHH---HHHHHHHhccCCceEEEEEecCCCChHHHHHHHHhCCCCccccceEEEeeeeeeccccccCCcchHHH
Q 002559 159 QGYPISSKS---KFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACNGSKSDYQK 235 (908)
Q Consensus 159 ~~~g~e~~~---~~l~~LL~~~~~~~vV~I~GmgGiGKTtLA~~v~~~~~~~F~~~~f~~~v~~wv~~~~~~~s~~~~~~ 235 (908)
..+|.+... +.+..++... ....+.++|++|+||||||+.+++.....|. .++. .. .. ..
T Consensus 13 d~vGq~~~v~~~~~L~~~i~~~-~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~----~l~a------~~---~~---~~ 75 (413)
T PRK13342 13 EVVGQEHLLGPGKPLRRMIEAG-RLSSMILWGPPGTGKTTLARIIAGATDAPFE----ALSA------VT---SG---VK 75 (413)
T ss_pred HhcCcHHHhCcchHHHHHHHcC-CCceEEEECCCCCCHHHHHHHHHHHhCCCEE----EEec------cc---cc---HH
Confidence 445655443 3477777654 4556788999999999999999987654442 1111 00 11 11
Q ss_pred HHHHHHHHHHHHhccccccCCCCCCHHHHHHHHHH-HhccCCeeEEEecCCch--hHHHHHhhhcCCCcEEEE--Eccch
Q 002559 236 RLARKISKFLVQIGFWKKIKDENSDLEYLCCLLQE-ALYGKSILILLDDVWEQ--DIVERFAKLYDNDCKYLV--TTRNE 310 (908)
Q Consensus 236 ~l~~~i~~~L~~lg~~~~~~~~~~~~~~l~~~l~~-~L~~kr~LLVLDDV~~~--~~~e~l~~~~~~gsrILV--TTR~~ 310 (908)
.+ +.+.+ .... ...+++.+|++|+++.. .+.+.+.+.+..|..++| ||.+.
T Consensus 76 ~i-r~ii~-----------------------~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~~~iilI~att~n~ 131 (413)
T PRK13342 76 DL-REVIE-----------------------EARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVEDGTITLIGATTENP 131 (413)
T ss_pred HH-HHHHH-----------------------HHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhhcCcEEEEEeCCCCh
Confidence 11 11111 1111 12457889999999854 566777776666766555 34443
Q ss_pred h------hhhhccccee-cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhHhCCchhhHhHhhh
Q 002559 311 A------VYEITEAEKV-ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGHHPLTVAVMGK 370 (908)
Q Consensus 311 ~------va~~~~~~~~-~L~~~ea~~Lf~~~~~~~~~~~~~~l~~i~~~Iv~~cgGLPLAI~~ig~ 370 (908)
. +...+....+ +++.++...++.+.+.........-.++..+.|++.|+|.|..+..+..
T Consensus 132 ~~~l~~aL~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le 198 (413)
T PRK13342 132 SFEVNPALLSRAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLE 198 (413)
T ss_pred hhhccHHHhccceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHH
Confidence 2 1122222233 7899999999887664321100122346778899999998876544433
No 16
>PRK06893 DNA replication initiation factor; Validated
Probab=98.30 E-value=3.6e-06 Score=89.53 Aligned_cols=144 Identities=17% Similarity=0.143 Sum_probs=82.1
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCCCCccccceEEEeeeeeeccccccCCcchHHHHHHHHHHHHHHHhccccccCCCCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACNGSKSDYQKRLARKISKFLVQIGFWKKIKDENS 259 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~~~~F~~~~f~~~v~~wv~~~~~~~s~~~~~~~l~~~i~~~L~~lg~~~~~~~~~~ 259 (908)
.+.+.|+|++|+|||+|++++++....+.. .+.|+++.. . ......
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~-~~~y~~~~~---------~-----~~~~~~------------------- 84 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHYLLNQR-TAIYIPLSK---------S-----QYFSPA------------------- 84 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCC-CeEEeeHHH---------h-----hhhhHH-------------------
Confidence 457889999999999999999987543322 233333210 0 000000
Q ss_pred CHHHHHHHHHHHhccCCeeEEEecCCch---hHHH-HHhhhc----CCCcEEEEEccch----------hhhhhccc---
Q 002559 260 DLEYLCCLLQEALYGKSILILLDDVWEQ---DIVE-RFAKLY----DNDCKYLVTTRNE----------AVYEITEA--- 318 (908)
Q Consensus 260 ~~~~l~~~l~~~L~~kr~LLVLDDV~~~---~~~e-~l~~~~----~~gsrILVTTR~~----------~va~~~~~--- 318 (908)
+.+.+. +.-+|||||++.. ..|+ .+...+ ..|+.+||+|.+. ++...+..
T Consensus 85 --------~~~~~~-~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~ 155 (229)
T PRK06893 85 --------VLENLE-QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEI 155 (229)
T ss_pred --------HHhhcc-cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCe
Confidence 111111 2358999999863 4454 222222 3466665544433 34443332
Q ss_pred cee-cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhHhCCchhhHhHhh
Q 002559 319 EKV-ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGHHPLTVAVMG 369 (908)
Q Consensus 319 ~~~-~L~~~ea~~Lf~~~~~~~~~~~~~~l~~i~~~Iv~~cgGLPLAI~~ig 369 (908)
..+ +++.++.++++++.+.......+ +++.+-|++++.|..-.+..+-
T Consensus 156 ~~l~~pd~e~~~~iL~~~a~~~~l~l~---~~v~~~L~~~~~~d~r~l~~~l 204 (229)
T PRK06893 156 YQLNDLTDEQKIIVLQRNAYQRGIELS---DEVANFLLKRLDRDMHTLFDAL 204 (229)
T ss_pred eeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhccCCHHHHHHHH
Confidence 222 78999999999887765543222 3677788888877655444333
No 17
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.23 E-value=3.5e-05 Score=96.38 Aligned_cols=309 Identities=19% Similarity=0.214 Sum_probs=166.7
Q ss_pred CCcCccHHHHHHHHHhcc--CCceEEEEEecCCCChHHHHHHHHhCCCCc---cccceEEEeeeeeeccccccCCcch-H
Q 002559 160 GYPISSKSKFLRKLLEQE--ETHQVILIVGLSGIGKSCLARQVASDPPER---FVGGAVELGFGQWCSRAACNGSKSD-Y 233 (908)
Q Consensus 160 ~~g~e~~~~~l~~LL~~~--~~~~vV~I~GmgGiGKTtLA~~v~~~~~~~---F~~~~f~~~v~~wv~~~~~~~s~~~-~ 233 (908)
.+||+.+.+.+...++.- +.-.++.+.|.+|||||+|+++|...+.++ |-.+.|- .+.. +.+. .
T Consensus 2 l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~-q~~~---------~ipl~~ 71 (849)
T COG3899 2 LYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFD-QFER---------NIPLSP 71 (849)
T ss_pred CCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcc-cccC---------CCchHH
Confidence 468888888887777653 236799999999999999999999876533 2222211 0000 0110 0
Q ss_pred HHHHHHHHHH----------------HHHHhcccccc------------C---C--C-CC-CHHH-----HHHHHHHHh-
Q 002559 234 QKRLARKISK----------------FLVQIGFWKKI------------K---D--E-NS-DLEY-----LCCLLQEAL- 272 (908)
Q Consensus 234 ~~~l~~~i~~----------------~L~~lg~~~~~------------~---~--~-~~-~~~~-----l~~~l~~~L- 272 (908)
..+..+++.. .+..+|..... . . + .+ .... ....+....
T Consensus 72 lvq~~r~l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~ 151 (849)
T COG3899 72 LVQAFRDLMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTA 151 (849)
T ss_pred HHHHHHHHHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHh
Confidence 1111122211 12222210000 0 0 0 00 0011 122233333
Q ss_pred ccCCeeEEEecCC--chhHHHHHhhh---cCC----CcEEEEEccchhh-h---h-hccccee---cCChhhHHHHHHHH
Q 002559 273 YGKSILILLDDVW--EQDIVERFAKL---YDN----DCKYLVTTRNEAV-Y---E-ITEAEKV---ELSKDDIMEISKSI 335 (908)
Q Consensus 273 ~~kr~LLVLDDV~--~~~~~e~l~~~---~~~----gsrILVTTR~~~v-a---~-~~~~~~~---~L~~~ea~~Lf~~~ 335 (908)
+.++.++|+||+. |...++.+... .+. ...|..+...... . . ......+ ||+..+...+....
T Consensus 152 ~~~plVi~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~ 231 (849)
T COG3899 152 EEHPLVIVLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAAT 231 (849)
T ss_pred ccCCeEEEEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHH
Confidence 3469999999994 33333333211 110 1123222222211 1 1 1111222 89999999988777
Q ss_pred hhhcccccCcchHHHHHHHHhHhCCchhhHhHhhhhhhcc------CCHHHHHHHHHHhchhhcCCCCCCCccchhhhcc
Q 002559 336 LLYHSLLAEEELPAAAESLLERCGHHPLTVAVMGKALRKE------LRSEKWEKAITDLSTFATCAPGPVSYVNEKEAEN 409 (908)
Q Consensus 336 ~~~~~~~~~~~l~~i~~~Iv~~cgGLPLAI~~ig~~L~~~------~~~~eW~~~l~~L~~~~~~~~~~~~~~~~~~~~~ 409 (908)
++... ....+....|.++..|+|+-+..+-..+..+ .+...|..=..++.. ...
T Consensus 232 l~~~~----~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~----------------~~~ 291 (849)
T COG3899 232 LGCTK----LLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGI----------------LAT 291 (849)
T ss_pred hCCcc----cccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCC----------------chh
Confidence 65432 2234778999999999999999999988752 233445432222221 111
Q ss_pred cccccchhhhhhccCcHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHhhcchHHHHHHHHHHcCCcccc-----C-CCCe
Q 002559 410 TLTIFGSFEFSLEAMPRDSRRLFIALAALSWAEPVPEACLEAIWSILVQKSLFSLAVCKLVEGSLLMKD-----D-TDPL 483 (908)
Q Consensus 410 ~~~I~~~L~lSy~~L~~~~K~cfl~lsiFp~~~~i~~~~L~~lW~a~g~~~~~e~~l~~Lv~rsLl~~~-----~-~~~~ 483 (908)
..++...+..-.+.||...|+.+...||+- ..|+.+.|..++..... ..+....+.|.+..++-.+ + ....
T Consensus 292 ~~~vv~~l~~rl~kL~~~t~~Vl~~AA~iG--~~F~l~~La~l~~~~~~-~~a~~l~~al~e~lI~~~~~~yr~~~~~~~ 368 (849)
T COG3899 292 TDAVVEFLAARLQKLPGTTREVLKAAACIG--NRFDLDTLAALAEDSPA-LEAAALLDALQEGLILPLSETYRFGSNVDI 368 (849)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--ccCCHHHHHHHHhhchH-HHHHHHHHHhHhhceeccccccccccccch
Confidence 113344577788999999999999999985 45677887777664322 2233444555554444311 1 1112
Q ss_pred E---EECHHHHHHHHHhcccc
Q 002559 484 Y---QVHDMVSLYLDSKTNDS 501 (908)
Q Consensus 484 ~---~mHdLVr~~a~~~~~e~ 501 (908)
. -.||.|++.+.....+.
T Consensus 369 ~~Y~F~H~~vqqaaY~~i~~~ 389 (849)
T COG3899 369 ATYKFLHDRVQQAAYNLIPES 389 (849)
T ss_pred hhHHhhHHHHHHHHhccCchh
Confidence 2 58999999887665544
No 18
>PF13173 AAA_14: AAA domain
Probab=98.13 E-value=1.3e-05 Score=77.03 Aligned_cols=98 Identities=22% Similarity=0.304 Sum_probs=64.0
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCCCCccccceEEEeeeeeeccccccCCcchHHHHHHHHHHHHHHHhccccccCCCCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACNGSKSDYQKRLARKISKFLVQIGFWKKIKDENS 259 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~~~~F~~~~f~~~v~~wv~~~~~~~s~~~~~~~l~~~i~~~L~~lg~~~~~~~~~~ 259 (908)
.+++.|.|+.|+|||||+++++++.. -+..++++++... .... ..
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~--~~~~~~yi~~~~~-----------~~~~-~~--------------------- 46 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL--PPENILYINFDDP-----------RDRR-LA--------------------- 46 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc--ccccceeeccCCH-----------HHHH-Hh---------------------
Confidence 36899999999999999999998765 2234556555321 1100 00
Q ss_pred CHHHHHHHHHHHhccCCeeEEEecCCchhHHHHHhhhc-C--CCcEEEEEccchhhh
Q 002559 260 DLEYLCCLLQEALYGKSILILLDDVWEQDIVERFAKLY-D--NDCKYLVTTRNEAVY 313 (908)
Q Consensus 260 ~~~~l~~~l~~~L~~kr~LLVLDDV~~~~~~e~l~~~~-~--~gsrILVTTR~~~va 313 (908)
+.+ ..+.+.+....++.+|+||++.....|......+ . +..+|++|+.+....
T Consensus 47 ~~~-~~~~~~~~~~~~~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l 102 (128)
T PF13173_consen 47 DPD-LLEYFLELIKPGKKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLL 102 (128)
T ss_pred hhh-hHHHHHHhhccCCcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHH
Confidence 000 2233334444477899999999888887766544 2 357999999887655
No 19
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.12 E-value=6.8e-06 Score=78.81 Aligned_cols=113 Identities=19% Similarity=0.274 Sum_probs=69.3
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCCCCcc----ccceEEEeeeeeeccccccCCcchHHHHHHHHHHHHHHHhccccccC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDPPERF----VGGAVELGFGQWCSRAACNGSKSDYQKRLARKISKFLVQIGFWKKIK 255 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~~~~F----~~~~f~~~v~~wv~~~~~~~s~~~~~~~l~~~i~~~L~~lg~~~~~~ 255 (908)
.+++.|+|.+|+|||++++.+++.....+ ...++|+++.. ......+...|...+.. ..
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~i~~~l~~------~~ 66 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPS-----------SRTPRDFAQEILEALGL------PL 66 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHH-----------HSSHHHHHHHHHHHHT-------SS
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCC-----------CCCHHHHHHHHHHHhCc------cc
Confidence 46889999999999999999998764321 33455544421 11345666666555422 11
Q ss_pred CCCCCHHHHHHHHHHHhccCCe-eEEEecCCch---hHHHHHhhhc-CCCcEEEEEccc
Q 002559 256 DENSDLEYLCCLLQEALYGKSI-LILLDDVWEQ---DIVERFAKLY-DNDCKYLVTTRN 309 (908)
Q Consensus 256 ~~~~~~~~l~~~l~~~L~~kr~-LLVLDDV~~~---~~~e~l~~~~-~~gsrILVTTR~ 309 (908)
....+.+++...+.+.+...+. +||+|++... +.++.+.... ..+.++|+..+.
T Consensus 67 ~~~~~~~~l~~~~~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 67 KSRQTSDELRSLLIDALDRRRVVLLVIDEADHLFSDEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp SSTS-HHHHHHHHHHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTCSCBEEEEEEESS
T ss_pred cccCCHHHHHHHHHHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHhCCCCeEEEEECh
Confidence 1134677788888888887655 9999999865 3445554433 346677776655
No 20
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.11 E-value=0.00046 Score=83.53 Aligned_cols=165 Identities=13% Similarity=0.052 Sum_probs=86.1
Q ss_pred cCCCcCccHHHHHHHHHhc----cCCceEEEEEecCCCChHHHHHHHHhCCCC-----ccc-cceEEEeeeeeecccccc
Q 002559 158 EQGYPISSKSKFLRKLLEQ----EETHQVILIVGLSGIGKSCLARQVASDPPE-----RFV-GGAVELGFGQWCSRAACN 227 (908)
Q Consensus 158 ~~~~g~e~~~~~l~~LL~~----~~~~~vV~I~GmgGiGKTtLA~~v~~~~~~-----~F~-~~~f~~~v~~wv~~~~~~ 227 (908)
+...+|+++.+.|...|.. .....++-|+|++|.|||+.++.|.+.+.. ..+ ..+++++- .
T Consensus 755 D~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINC---------m 825 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEING---------M 825 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeC---------C
Confidence 4445788888888777654 223457789999999999999999876531 111 22334332 1
Q ss_pred CCcchHHHHHHHHHHHHHHHhccccccCCCCCCHHHHHHHHHHHh-cc--CCeeEEEecCCchh-----HHHHHhhhc-C
Q 002559 228 GSKSDYQKRLARKISKFLVQIGFWKKIKDENSDLEYLCCLLQEAL-YG--KSILILLDDVWEQD-----IVERFAKLY-D 298 (908)
Q Consensus 228 ~s~~~~~~~l~~~i~~~L~~lg~~~~~~~~~~~~~~l~~~l~~~L-~~--kr~LLVLDDV~~~~-----~~e~l~~~~-~ 298 (908)
.-.....+...|...|. + ...............+...+ .. ...+||||+|+... .+-.|..+. .
T Consensus 826 --~Lstp~sIYqvI~qqL~--g---~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~ 898 (1164)
T PTZ00112 826 --NVVHPNAAYQVLYKQLF--N---KKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTK 898 (1164)
T ss_pred --ccCCHHHHHHHHHHHHc--C---CCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhc
Confidence 11122334444443331 1 11111223333444444444 22 24589999998542 222223322 2
Q ss_pred CCcEEEE--Eccch--------hhhhhccccee---cCChhhHHHHHHHHhhh
Q 002559 299 NDCKYLV--TTRNE--------AVYEITEAEKV---ELSKDDIMEISKSILLY 338 (908)
Q Consensus 299 ~gsrILV--TTR~~--------~va~~~~~~~~---~L~~~ea~~Lf~~~~~~ 338 (908)
.+++|+| .|... .+...++...+ |++.++-.+++..++..
T Consensus 899 s~SKLiLIGISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~ 951 (1164)
T PTZ00112 899 INSKLVLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLEN 951 (1164)
T ss_pred cCCeEEEEEecCchhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHh
Confidence 4565444 33222 12222222222 77888888888777653
No 21
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.06 E-value=7.2e-05 Score=84.01 Aligned_cols=191 Identities=16% Similarity=0.225 Sum_probs=96.7
Q ss_pred CCCcCccHHHHHHHHHhccCCceEEEEEecCCCChHHHHHHHHhCCCCc-cccceEEEeeeeeeccccccCCcchHHHHH
Q 002559 159 QGYPISSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPPER-FVGGAVELGFGQWCSRAACNGSKSDYQKRL 237 (908)
Q Consensus 159 ~~~g~e~~~~~l~~LL~~~~~~~vV~I~GmgGiGKTtLA~~v~~~~~~~-F~~~~f~~~v~~wv~~~~~~~s~~~~~~~l 237 (908)
..+|.++..+.+..++..+ ..+.+.++|++|+||||+|+.+++....+ +....++++....+.. ........
T Consensus 16 ~~~g~~~~~~~L~~~~~~~-~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~~~-----~~~~~~~~- 88 (337)
T PRK12402 16 DILGQDEVVERLSRAVDSP-NLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFFDQ-----GKKYLVED- 88 (337)
T ss_pred HhcCCHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhhhc-----chhhhhcC-
Confidence 4457777778888877654 34457899999999999999999876532 2333344433211000 00000000
Q ss_pred HHHHHHHHHHhccccccCCCCCCHHHHHHHHHHHh-----ccCCeeEEEecCCch--hHHHHHhhh---cCCCcEEEEEc
Q 002559 238 ARKISKFLVQIGFWKKIKDENSDLEYLCCLLQEAL-----YGKSILILLDDVWEQ--DIVERFAKL---YDNDCKYLVTT 307 (908)
Q Consensus 238 ~~~i~~~L~~lg~~~~~~~~~~~~~~l~~~l~~~L-----~~kr~LLVLDDV~~~--~~~e~l~~~---~~~gsrILVTT 307 (908)
......+ +. .........+.....++... .+.+-+||+||+... ...+.+... .++.+++|+||
T Consensus 89 -~~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~ 162 (337)
T PRK12402 89 -PRFAHFL---GT--DKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIAT 162 (337)
T ss_pred -cchhhhh---hh--hhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEe
Confidence 0000000 00 00000111122222222211 133458999999754 233344432 34567888877
Q ss_pred cchh-hhh----hccccee-cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhHhCCchhhH
Q 002559 308 RNEA-VYE----ITEAEKV-ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGHHPLTV 365 (908)
Q Consensus 308 R~~~-va~----~~~~~~~-~L~~~ea~~Lf~~~~~~~~~~~~~~l~~i~~~Iv~~cgGLPLAI 365 (908)
.+.. +.. .+..... +++.++....+.+.+...+.. -.++....+++.++|.+-.+
T Consensus 163 ~~~~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~---~~~~al~~l~~~~~gdlr~l 223 (337)
T PRK12402 163 RQPSKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVD---YDDDGLELIAYYAGGDLRKA 223 (337)
T ss_pred CChhhCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHH
Confidence 5432 222 1111111 688888877777766544332 22467788888888765443
No 22
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.05 E-value=0.00018 Score=86.50 Aligned_cols=183 Identities=15% Similarity=0.209 Sum_probs=104.0
Q ss_pred cCCCcCccHHHHHHHHHhccCCceEEEEEecCCCChHHHHHHHHhCCCCc--c---ccceEEEeeeeeeccccccCCcch
Q 002559 158 EQGYPISSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPPER--F---VGGAVELGFGQWCSRAACNGSKSD 232 (908)
Q Consensus 158 ~~~~g~e~~~~~l~~LL~~~~~~~vV~I~GmgGiGKTtLA~~v~~~~~~~--F---~~~~f~~~v~~wv~~~~~~~s~~~ 232 (908)
...+|.+...+.|...+..+.-.+.+.++|..|+||||+|+.+++.+... + +|+. |.
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~-------------C~----- 77 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGV-------------CR----- 77 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcc-------------cH-----
Confidence 45568888888888888766546777899999999999999998865311 1 1110 11
Q ss_pred HHHHHHHHHHHHHHHhccccccC-CCCCCHHHHHHHHHHHh----ccCCeeEEEecCCch--hHHHHHhhhc---CCCcE
Q 002559 233 YQKRLARKISKFLVQIGFWKKIK-DENSDLEYLCCLLQEAL----YGKSILILLDDVWEQ--DIVERFAKLY---DNDCK 302 (908)
Q Consensus 233 ~~~~l~~~i~~~L~~lg~~~~~~-~~~~~~~~l~~~l~~~L----~~kr~LLVLDDV~~~--~~~e~l~~~~---~~gsr 302 (908)
.-..+...- . .... ... .....++++.+.+.... .++.-++|||+++.. ..++.|++.+ +...+
T Consensus 78 sCr~I~~G~---h--~Dvi-EIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~ 151 (830)
T PRK07003 78 ACREIDEGR---F--VDYV-EMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVK 151 (830)
T ss_pred HHHHHhcCC---C--ceEE-EecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeE
Confidence 000000000 0 0000 000 00112333333333221 245568889999865 4577777654 45778
Q ss_pred EEEEccchh-hhh----hccccee-cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhHhCCch-hhHhH
Q 002559 303 YLVTTRNEA-VYE----ITEAEKV-ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGHHP-LTVAV 367 (908)
Q Consensus 303 ILVTTR~~~-va~----~~~~~~~-~L~~~ea~~Lf~~~~~~~~~~~~~~l~~i~~~Iv~~cgGLP-LAI~~ 367 (908)
+|+||.+.. +.. .|....+ +++.++..+.+.+++...+.. -..+..+.|++.++|.. -|+..
T Consensus 152 FILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~---id~eAL~lIA~~A~GsmRdALsL 220 (830)
T PRK07003 152 FILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIA---FEPQALRLLARAAQGSMRDALSL 220 (830)
T ss_pred EEEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 787777653 322 2222222 688888888887776554332 22467788999998854 45544
No 23
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.04 E-value=3.9e-05 Score=93.90 Aligned_cols=162 Identities=21% Similarity=0.270 Sum_probs=90.0
Q ss_pred CCCcCccHH---HHHHHHHhccCCceEEEEEecCCCChHHHHHHHHhCCCCccccceEEEeeeeeeccccccCCcchHHH
Q 002559 159 QGYPISSKS---KFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACNGSKSDYQK 235 (908)
Q Consensus 159 ~~~g~e~~~---~~l~~LL~~~~~~~vV~I~GmgGiGKTtLA~~v~~~~~~~F~~~~f~~~v~~wv~~~~~~~s~~~~~~ 235 (908)
..+|.+... ..+..++..+ ....+.++|++|+||||||+.+++.....|. .++. .... ..
T Consensus 29 d~vGQe~ii~~~~~L~~~i~~~-~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~----~lna---------~~~~---i~ 91 (725)
T PRK13341 29 EFVGQDHILGEGRLLRRAIKAD-RVGSLILYGPPGVGKTTLARIIANHTRAHFS----SLNA---------VLAG---VK 91 (725)
T ss_pred HhcCcHHHhhhhHHHHHHHhcC-CCceEEEECCCCCCHHHHHHHHHHHhcCcce----eehh---------hhhh---hH
Confidence 345655444 4566666654 4556789999999999999999987655442 1110 0000 01
Q ss_pred HHHHHHHHHHHHhccccccCCCCCCHHHHHHHHHHHh--ccCCeeEEEecCC--chhHHHHHhhhcCCCcEEEEE--ccc
Q 002559 236 RLARKISKFLVQIGFWKKIKDENSDLEYLCCLLQEAL--YGKSILILLDDVW--EQDIVERFAKLYDNDCKYLVT--TRN 309 (908)
Q Consensus 236 ~l~~~i~~~L~~lg~~~~~~~~~~~~~~l~~~l~~~L--~~kr~LLVLDDV~--~~~~~e~l~~~~~~gsrILVT--TR~ 309 (908)
.+ +.+ .....+.+ .+++.+|||||++ +..+.+.+.+....|+.++|+ |.+
T Consensus 92 di-r~~-----------------------i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE~g~IiLI~aTTen 147 (725)
T PRK13341 92 DL-RAE-----------------------VDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVENGTITLIGATTEN 147 (725)
T ss_pred HH-HHH-----------------------HHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhcCceEEEEEecCCC
Confidence 11 111 11111111 2456799999997 456677787767777766663 444
Q ss_pred hh--hh----hhccccee-cCChhhHHHHHHHHhhhcc----cccCcchHHHHHHHHhHhCCc
Q 002559 310 EA--VY----EITEAEKV-ELSKDDIMEISKSILLYHS----LLAEEELPAAAESLLERCGHH 361 (908)
Q Consensus 310 ~~--va----~~~~~~~~-~L~~~ea~~Lf~~~~~~~~----~~~~~~l~~i~~~Iv~~cgGL 361 (908)
.. +. ..+....+ +|+.++...++.+.+.... .....-.++....|++.+.|.
T Consensus 148 p~~~l~~aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD 210 (725)
T PRK13341 148 PYFEVNKALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGD 210 (725)
T ss_pred hHhhhhhHhhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCC
Confidence 31 11 11222222 7898888888877654211 111122235567777777664
No 24
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=97.98 E-value=6.3e-05 Score=79.48 Aligned_cols=158 Identities=22% Similarity=0.220 Sum_probs=86.6
Q ss_pred cHHHHHHHHHhccCCceEEEEEecCCCChHHHHHHHHhCCCCccccceEEEeeeeeeccccccCCcchHHHHHHHHHHHH
Q 002559 165 SKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACNGSKSDYQKRLARKISKF 244 (908)
Q Consensus 165 ~~~~~l~~LL~~~~~~~vV~I~GmgGiGKTtLA~~v~~~~~~~F~~~~f~~~v~~wv~~~~~~~s~~~~~~~l~~~i~~~ 244 (908)
...+.++.++.. .....+.|+|.+|+|||+||+.+++...... ..+++++.. .+......
T Consensus 24 ~~~~~l~~~~~~-~~~~~lll~G~~G~GKT~la~~~~~~~~~~~-~~~~~i~~~-----------------~~~~~~~~- 83 (226)
T TIGR03420 24 ELLAALRQLAAG-KGDRFLYLWGESGSGKSHLLQAACAAAEERG-KSAIYLPLA-----------------ELAQADPE- 83 (226)
T ss_pred HHHHHHHHHHhc-CCCCeEEEECCCCCCHHHHHHHHHHHHHhcC-CcEEEEeHH-----------------HHHHhHHH-
Confidence 455666666543 3467889999999999999999997654322 123333221 00000000
Q ss_pred HHHhccccccCCCCCCHHHHHHHHHHHhccCCeeEEEecCCchh---H-HHHHhhhc----CCCcEEEEEccchh-----
Q 002559 245 LVQIGFWKKIKDENSDLEYLCCLLQEALYGKSILILLDDVWEQD---I-VERFAKLY----DNDCKYLVTTRNEA----- 311 (908)
Q Consensus 245 L~~lg~~~~~~~~~~~~~~l~~~l~~~L~~kr~LLVLDDV~~~~---~-~e~l~~~~----~~gsrILVTTR~~~----- 311 (908)
+.+.+.+ .-+|||||++... . .+.+...+ ..+.++|+||+...
T Consensus 84 -----------------------~~~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~ 139 (226)
T TIGR03420 84 -----------------------VLEGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPL 139 (226)
T ss_pred -----------------------HHhhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCc
Confidence 0011222 2489999997542 2 23343322 34568999887532
Q ss_pred ----hhhhcc-cce--e-cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhHhCCchhhHhHhh
Q 002559 312 ----VYEITE-AEK--V-ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGHHPLTVAVMG 369 (908)
Q Consensus 312 ----va~~~~-~~~--~-~L~~~ea~~Lf~~~~~~~~~~~~~~l~~i~~~Iv~~cgGLPLAI~~ig 369 (908)
+..... ... + +++.++...++...+..... .-.++..+.|++.++|.|..+..+.
T Consensus 140 ~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~---~~~~~~l~~L~~~~~gn~r~L~~~l 202 (226)
T TIGR03420 140 RLPDLRTRLAWGLVFQLPPLSDEEKIAALQSRAARRGL---QLPDEVADYLLRHGSRDMGSLMALL 202 (226)
T ss_pred ccHHHHHHHhcCeeEecCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHhccCCHHHHHHHH
Confidence 111221 112 2 67887777777655432222 1223566777777888776665544
No 25
>PRK09087 hypothetical protein; Validated
Probab=97.96 E-value=0.00012 Score=77.61 Aligned_cols=136 Identities=14% Similarity=0.142 Sum_probs=80.1
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCCCCccccceEEEeeeeeeccccccCCcchHHHHHHHHHHHHHHHhccccccCCCCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACNGSKSDYQKRLARKISKFLVQIGFWKKIKDENS 259 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~~~~F~~~~f~~~v~~wv~~~~~~~s~~~~~~~l~~~i~~~L~~lg~~~~~~~~~~ 259 (908)
.+.+.|+|.+|+|||+|++.+++.... .|++. ......+...+
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~~------~~i~~-------------~~~~~~~~~~~------------------ 86 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSDA------LLIHP-------------NEIGSDAANAA------------------ 86 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcCC------EEecH-------------HHcchHHHHhh------------------
Confidence 456899999999999999999876432 12211 10001111100
Q ss_pred CHHHHHHHHHHHhccCCeeEEEecCCch----hHHHHHh-hhcCCCcEEEEEccch---------hhhhhccc---cee-
Q 002559 260 DLEYLCCLLQEALYGKSILILLDDVWEQ----DIVERFA-KLYDNDCKYLVTTRNE---------AVYEITEA---EKV- 321 (908)
Q Consensus 260 ~~~~l~~~l~~~L~~kr~LLVLDDV~~~----~~~e~l~-~~~~~gsrILVTTR~~---------~va~~~~~---~~~- 321 (908)
.+ -+|++||+... +.+-.+. .....|..||+|++.. ++...+.. ..+
T Consensus 87 -------------~~--~~l~iDDi~~~~~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~ 151 (226)
T PRK09087 87 -------------AE--GPVLIEDIDAGGFDETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIG 151 (226)
T ss_pred -------------hc--CeEEEECCCCCCCCHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecC
Confidence 01 27888999532 2222222 2335688899999743 22222221 222
Q ss_pred cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhHhCCchhhHhHhhh
Q 002559 322 ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGHHPLTVAVMGK 370 (908)
Q Consensus 322 ~L~~~ea~~Lf~~~~~~~~~~~~~~l~~i~~~Iv~~cgGLPLAI~~ig~ 370 (908)
+++.++-.+++.+.+...+...+ +++..-|++.+.|..-++..+-.
T Consensus 152 ~pd~e~~~~iL~~~~~~~~~~l~---~ev~~~La~~~~r~~~~l~~~l~ 197 (226)
T PRK09087 152 EPDDALLSQVIFKLFADRQLYVD---PHVVYYLVSRMERSLFAAQTIVD 197 (226)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHhhhhHHHHHHHHH
Confidence 78888888888887765433222 47788888888887766664333
No 26
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.93 E-value=9.3e-05 Score=71.19 Aligned_cols=42 Identities=31% Similarity=0.411 Sum_probs=31.5
Q ss_pred CccHHHHHHHHHhccCCceEEEEEecCCCChHHHHHHHHhCCC
Q 002559 163 ISSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 163 ~e~~~~~l~~LL~~~~~~~vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
++.....+...+... ..+.+.|+|.+|+|||++++.+++...
T Consensus 3 ~~~~~~~i~~~~~~~-~~~~v~i~G~~G~GKT~l~~~i~~~~~ 44 (151)
T cd00009 3 QEEAIEALREALELP-PPKNLLLYGPPGTGKTTLARAIANELF 44 (151)
T ss_pred hHHHHHHHHHHHhCC-CCCeEEEECCCCCCHHHHHHHHHHHhh
Confidence 445555555555442 356888999999999999999998764
No 27
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.91 E-value=0.00018 Score=85.56 Aligned_cols=189 Identities=17% Similarity=0.191 Sum_probs=103.5
Q ss_pred cCCCcCccHHHHHHHHHhccCCceEEEEEecCCCChHHHHHHHHhCCCCccccceEEEeeeeeeccccccCCcchHHHHH
Q 002559 158 EQGYPISSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACNGSKSDYQKRL 237 (908)
Q Consensus 158 ~~~~g~e~~~~~l~~LL~~~~~~~vV~I~GmgGiGKTtLA~~v~~~~~~~F~~~~f~~~v~~wv~~~~~~~s~~~~~~~l 237 (908)
...+|.+.-.+.|...+..+.-.+.+.++|..|+||||+|+.+++.+...-.++.- -.....|... ..
T Consensus 16 ddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~------g~~~~PCG~C--~s---- 83 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEG------GITAQPCGQC--RA---- 83 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccc------cCCCCCCccc--HH----
Confidence 45668888888888888876556788999999999999999998765311000000 0000001100 00
Q ss_pred HHHHHHHHHHhcc-cc--ccC-CCCCCHHHHHHHHHHH----hccCCeeEEEecCCch--hHHHHHhhhc---CCCcEEE
Q 002559 238 ARKISKFLVQIGF-WK--KIK-DENSDLEYLCCLLQEA----LYGKSILILLDDVWEQ--DIVERFAKLY---DNDCKYL 304 (908)
Q Consensus 238 ~~~i~~~L~~lg~-~~--~~~-~~~~~~~~l~~~l~~~----L~~kr~LLVLDDV~~~--~~~e~l~~~~---~~gsrIL 304 (908)
.+.|. . |. .+ ... .....++++.+.+... ..++.-++|||+++.. ..++.|++.+ +.++++|
T Consensus 84 C~~I~----a-G~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FI 158 (700)
T PRK12323 84 CTEID----A-GRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFI 158 (700)
T ss_pred HHHHH----c-CCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEE
Confidence 00000 0 00 00 000 0112344444333332 1356678999999855 5677777655 3456655
Q ss_pred E-Eccchhhhh----hccccee-cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhHhCCchhhHh
Q 002559 305 V-TTRNEAVYE----ITEAEKV-ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGHHPLTVA 366 (908)
Q Consensus 305 V-TTR~~~va~----~~~~~~~-~L~~~ea~~Lf~~~~~~~~~~~~~~l~~i~~~Iv~~cgGLPLAI~ 366 (908)
+ ||....+.. .|..... +++.++..+.+.+++...+.. ...+..+.|++.++|.|.-..
T Consensus 159 LaTtep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~---~d~eAL~~IA~~A~Gs~RdAL 223 (700)
T PRK12323 159 LATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIA---HEVNALRLLAQAAQGSMRDAL 223 (700)
T ss_pred EEeCChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHH
Confidence 5 554444432 2333333 678888777777766543322 223566889999999886433
No 28
>PLN03025 replication factor C subunit; Provisional
Probab=97.91 E-value=0.00019 Score=80.30 Aligned_cols=169 Identities=13% Similarity=0.166 Sum_probs=91.5
Q ss_pred CCCcCccHHHHHHHHHhccCCceEEEEEecCCCChHHHHHHHHhCCC-CccccceEEEeeeeeeccccccCCcchHHHHH
Q 002559 159 QGYPISSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPP-ERFVGGAVELGFGQWCSRAACNGSKSDYQKRL 237 (908)
Q Consensus 159 ~~~g~e~~~~~l~~LL~~~~~~~vV~I~GmgGiGKTtLA~~v~~~~~-~~F~~~~f~~~v~~wv~~~~~~~s~~~~~~~l 237 (908)
..+|.++-.+.+..++..+ +.+.+.++|++|+||||+|..+++... ..|...++.++. +..... ..
T Consensus 14 ~~~g~~~~~~~L~~~~~~~-~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~-----------sd~~~~-~~ 80 (319)
T PLN03025 14 DIVGNEDAVSRLQVIARDG-NMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNA-----------SDDRGI-DV 80 (319)
T ss_pred HhcCcHHHHHHHHHHHhcC-CCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecc-----------cccccH-HH
Confidence 4456666777777777654 334467999999999999999998753 233322221111 111111 11
Q ss_pred HHHHHHHHHHhccccccCCCCCCHHHHHHHHHHHhccCCeeEEEecCCch--hHHHHHh---hhcCCCcEEEEEccch-h
Q 002559 238 ARKISKFLVQIGFWKKIKDENSDLEYLCCLLQEALYGKSILILLDDVWEQ--DIVERFA---KLYDNDCKYLVTTRNE-A 311 (908)
Q Consensus 238 ~~~i~~~L~~lg~~~~~~~~~~~~~~l~~~l~~~L~~kr~LLVLDDV~~~--~~~e~l~---~~~~~gsrILVTTR~~-~ 311 (908)
.+.+...+.+.. ... -.++.-++|||+++.. ...+.+. ...++.+++++++... .
T Consensus 81 vr~~i~~~~~~~------~~~-------------~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~ 141 (319)
T PLN03025 81 VRNKIKMFAQKK------VTL-------------PPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSK 141 (319)
T ss_pred HHHHHHHHHhcc------ccC-------------CCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccc
Confidence 122211111100 000 0134568999999855 3334443 3335567777766443 2
Q ss_pred h----hhhccccee-cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhHhCCch
Q 002559 312 V----YEITEAEKV-ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGHHP 362 (908)
Q Consensus 312 v----a~~~~~~~~-~L~~~ea~~Lf~~~~~~~~~~~~~~l~~i~~~Iv~~cgGLP 362 (908)
+ ...+..... ++++++....+...+...+..-+ ++....|++.++|-.
T Consensus 142 i~~~L~SRc~~i~f~~l~~~~l~~~L~~i~~~egi~i~---~~~l~~i~~~~~gDl 194 (319)
T PLN03025 142 IIEPIQSRCAIVRFSRLSDQEILGRLMKVVEAEKVPYV---PEGLEAIIFTADGDM 194 (319)
T ss_pred cchhHHHhhhcccCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCH
Confidence 2 222222222 67888877777776655443222 356778888888754
No 29
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.90 E-value=0.00014 Score=75.72 Aligned_cols=52 Identities=25% Similarity=0.323 Sum_probs=35.1
Q ss_pred cCCCcCccHHHHHHHHHhc----cCCceEEEEEecCCCChHHHHHHHHhCCCCccc
Q 002559 158 EQGYPISSKSKFLRKLLEQ----EETHQVILIVGLSGIGKSCLARQVASDPPERFV 209 (908)
Q Consensus 158 ~~~~g~e~~~~~l~~LL~~----~~~~~vV~I~GmgGiGKTtLA~~v~~~~~~~F~ 209 (908)
...+|.+.-.+.+.-++.. ......+.+||++|+||||||.-+++.....|.
T Consensus 24 ~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~ 79 (233)
T PF05496_consen 24 DEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVNFK 79 (233)
T ss_dssp CCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT--EE
T ss_pred HHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCCeE
Confidence 5666877766666655542 234778899999999999999999998876653
No 30
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.89 E-value=0.00029 Score=86.29 Aligned_cols=183 Identities=20% Similarity=0.195 Sum_probs=103.2
Q ss_pred cCCCcCccHHHHHHHHHhccCCceEEEEEecCCCChHHHHHHHHhCCCCc-c----ccceEEEeeeeeeccccccCCcch
Q 002559 158 EQGYPISSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPPER-F----VGGAVELGFGQWCSRAACNGSKSD 232 (908)
Q Consensus 158 ~~~~g~e~~~~~l~~LL~~~~~~~vV~I~GmgGiGKTtLA~~v~~~~~~~-F----~~~~f~~~v~~wv~~~~~~~s~~~ 232 (908)
...+|.+.-.+.+...+..+.-.+.+.++|+.|+||||+|+.+++.+... . +|+. |..
T Consensus 16 ddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~-------------C~s---- 78 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGV-------------CSS---- 78 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCC-------------chH----
Confidence 45568777777788877765446677899999999999999999876421 1 1111 110
Q ss_pred HHHHHHHHHHHHHHHhccccccCCC-CCCHHHH---HHHHHH-HhccCCeeEEEecCCch--hHHHHHhhhc---CCCcE
Q 002559 233 YQKRLARKISKFLVQIGFWKKIKDE-NSDLEYL---CCLLQE-ALYGKSILILLDDVWEQ--DIVERFAKLY---DNDCK 302 (908)
Q Consensus 233 ~~~~l~~~i~~~L~~lg~~~~~~~~-~~~~~~l---~~~l~~-~L~~kr~LLVLDDV~~~--~~~e~l~~~~---~~gsr 302 (908)
-..+.... ..... ..... ...++.+ ...+.. -..+++-++|||++... +.++.|++.+ +..++
T Consensus 79 -C~~i~~g~-----~~Dvi-EidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vr 151 (944)
T PRK14949 79 -CVEIAQGR-----FVDLI-EVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVK 151 (944)
T ss_pred -HHHHhcCC-----CceEE-EeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeE
Confidence 00000000 00000 00000 0122222 221111 12356779999999754 6677777655 34566
Q ss_pred EEEEccc-hhhhh----hccccee-cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhHhCCchh-hHhH
Q 002559 303 YLVTTRN-EAVYE----ITEAEKV-ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGHHPL-TVAV 367 (908)
Q Consensus 303 ILVTTR~-~~va~----~~~~~~~-~L~~~ea~~Lf~~~~~~~~~~~~~~l~~i~~~Iv~~cgGLPL-AI~~ 367 (908)
+|++|.+ ..+.. .|....+ +|+.++..+.+.+++...+. .-..+....|++.++|.|- |+..
T Consensus 152 FILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI---~~edeAL~lIA~~S~Gd~R~ALnL 220 (944)
T PRK14949 152 FLLATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQL---PFEAEALTLLAKAANGSMRDALSL 220 (944)
T ss_pred EEEECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 6655544 43432 2222333 79999988888776654322 2234677899999999885 4433
No 31
>PRK04195 replication factor C large subunit; Provisional
Probab=97.86 E-value=0.00016 Score=85.41 Aligned_cols=170 Identities=19% Similarity=0.218 Sum_probs=96.3
Q ss_pred cCCCcCccHHHHHHHHHhc---cCCceEEEEEecCCCChHHHHHHHHhCCCCccccceEEEeeeeeeccccccCCcchHH
Q 002559 158 EQGYPISSKSKFLRKLLEQ---EETHQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACNGSKSDYQ 234 (908)
Q Consensus 158 ~~~~g~e~~~~~l~~LL~~---~~~~~vV~I~GmgGiGKTtLA~~v~~~~~~~F~~~~f~~~v~~wv~~~~~~~s~~~~~ 234 (908)
...+|.++..+.+..++.. +...+.+.|+|++|+||||+|+.+++... |+ .+.++. +.....
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~--~~--~ielna-----------sd~r~~ 78 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG--WE--VIELNA-----------SDQRTA 78 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC--CC--EEEEcc-----------cccccH
Confidence 3456777888888887764 22268899999999999999999999874 21 222221 111111
Q ss_pred HHHHHHHHHHHHHhccccccCCCCCCHHHHHHHHHHHhccCCeeEEEecCCchh------HHHHHhhhc-CCCcEEEEEc
Q 002559 235 KRLARKISKFLVQIGFWKKIKDENSDLEYLCCLLQEALYGKSILILLDDVWEQD------IVERFAKLY-DNDCKYLVTT 307 (908)
Q Consensus 235 ~~l~~~i~~~L~~lg~~~~~~~~~~~~~~l~~~l~~~L~~kr~LLVLDDV~~~~------~~e~l~~~~-~~gsrILVTT 307 (908)
.....+...... .. .....++-+||+|+++... .++.+...+ ..++.||+|+
T Consensus 79 -~~i~~~i~~~~~------~~--------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~~~~~iIli~ 137 (482)
T PRK04195 79 -DVIERVAGEAAT------SG--------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIKKAKQPIILTA 137 (482)
T ss_pred -HHHHHHHHHhhc------cC--------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHHcCCCCEEEec
Confidence 112222211100 00 0011356799999998642 255555444 3455677766
Q ss_pred cchh-h-----hhhccccee-cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhHhCCchhhHh
Q 002559 308 RNEA-V-----YEITEAEKV-ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGHHPLTVA 366 (908)
Q Consensus 308 R~~~-v-----a~~~~~~~~-~L~~~ea~~Lf~~~~~~~~~~~~~~l~~i~~~Iv~~cgGLPLAI~ 366 (908)
-+.. . ...+..-.. +++..+....+.+.+...+...+ ++....|++.++|-.-.+.
T Consensus 138 n~~~~~~~k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~i~---~eaL~~Ia~~s~GDlR~ai 200 (482)
T PRK04195 138 NDPYDPSLRELRNACLMIEFKRLSTRSIVPVLKRICRKEGIECD---DEALKEIAERSGGDLRSAI 200 (482)
T ss_pred cCccccchhhHhccceEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHH
Confidence 4432 1 111111122 67777777777776654443322 3677889999988655443
No 32
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=97.86 E-value=0.00024 Score=77.42 Aligned_cols=134 Identities=19% Similarity=0.297 Sum_probs=86.2
Q ss_pred HHHHHHHHHhccCCceEEEEEecCCCChHHHHHHHHhCCCCccccceEEEeeeeeeccccccCCcchHHHHHHHHHHHHH
Q 002559 166 KSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACNGSKSDYQKRLARKISKFL 245 (908)
Q Consensus 166 ~~~~l~~LL~~~~~~~vV~I~GmgGiGKTtLA~~v~~~~~~~F~~~~f~~~v~~wv~~~~~~~s~~~~~~~l~~~i~~~L 245 (908)
....+..+++.+ .+..+.+||++|+||||||+.++..-+.+- .+|+.+. +.. ......+.+.++--.
T Consensus 149 q~gllrs~ieq~-~ipSmIlWGppG~GKTtlArlia~tsk~~S---yrfvelS----At~---a~t~dvR~ife~aq~-- 215 (554)
T KOG2028|consen 149 QDGLLRSLIEQN-RIPSMILWGPPGTGKTTLARLIASTSKKHS---YRFVELS----ATN---AKTNDVRDIFEQAQN-- 215 (554)
T ss_pred cchHHHHHHHcC-CCCceEEecCCCCchHHHHHHHHhhcCCCc---eEEEEEe----ccc---cchHHHHHHHHHHHH--
Confidence 355777777765 566777999999999999999998877541 3344332 111 223333333222110
Q ss_pred HHhccccccCCCCCCHHHHHHHHHHHhccCCeeEEEecCC--chhHHHHHhhhcCCCcEEEE--Eccchhhh------hh
Q 002559 246 VQIGFWKKIKDENSDLEYLCCLLQEALYGKSILILLDDVW--EQDIVERFAKLYDNDCKYLV--TTRNEAVY------EI 315 (908)
Q Consensus 246 ~~lg~~~~~~~~~~~~~~l~~~l~~~L~~kr~LLVLDDV~--~~~~~e~l~~~~~~gsrILV--TTR~~~va------~~ 315 (908)
...+.++|..|.+|.|. +..+-+.|++...+|.-++| ||.++... ..
T Consensus 216 -----------------------~~~l~krkTilFiDEiHRFNksQQD~fLP~VE~G~I~lIGATTENPSFqln~aLlSR 272 (554)
T KOG2028|consen 216 -----------------------EKSLTKRKTILFIDEIHRFNKSQQDTFLPHVENGDITLIGATTENPSFQLNAALLSR 272 (554)
T ss_pred -----------------------HHhhhcceeEEEeHHhhhhhhhhhhcccceeccCceEEEecccCCCccchhHHHHhc
Confidence 12345788999999995 56677888887788887766 78777432 23
Q ss_pred ccccee-cCChhhHHHHHHHH
Q 002559 316 TEAEKV-ELSKDDIMEISKSI 335 (908)
Q Consensus 316 ~~~~~~-~L~~~ea~~Lf~~~ 335 (908)
|.+..+ +|+.++-..++.+.
T Consensus 273 C~VfvLekL~~n~v~~iL~ra 293 (554)
T KOG2028|consen 273 CRVFVLEKLPVNAVVTILMRA 293 (554)
T ss_pred cceeEeccCCHHHHHHHHHHH
Confidence 333333 78888888877663
No 33
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.85 E-value=0.0003 Score=80.12 Aligned_cols=180 Identities=16% Similarity=0.194 Sum_probs=96.9
Q ss_pred cCCCcCccHHHHHHHHHhccCCceEEEEEecCCCChHHHHHHHHhCCCCc--c---ccceEEEeeeeeeccccccCCcch
Q 002559 158 EQGYPISSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPPER--F---VGGAVELGFGQWCSRAACNGSKSD 232 (908)
Q Consensus 158 ~~~~g~e~~~~~l~~LL~~~~~~~vV~I~GmgGiGKTtLA~~v~~~~~~~--F---~~~~f~~~v~~wv~~~~~~~s~~~ 232 (908)
...+|.+.-.+.+...+..+.-.+.+.++|+.|+||||+|+.+++..... + +|+. |.
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~-------------c~----- 77 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRK-------------CI----- 77 (363)
T ss_pred hhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCC-------------CH-----
Confidence 35568777777888877765446778999999999999999999865411 1 1110 10
Q ss_pred HHHHHHHHHHHHHHHhccccccCC-CCCCHHHHHHHHHHH----hccCCeeEEEecCCchh--HHHHHhhhc---CCCcE
Q 002559 233 YQKRLARKISKFLVQIGFWKKIKD-ENSDLEYLCCLLQEA----LYGKSILILLDDVWEQD--IVERFAKLY---DNDCK 302 (908)
Q Consensus 233 ~~~~l~~~i~~~L~~lg~~~~~~~-~~~~~~~l~~~l~~~----L~~kr~LLVLDDV~~~~--~~e~l~~~~---~~gsr 302 (908)
.-..+..... .... .... .....++....+... ..+++-++|+|++.... .++.+...+ +..++
T Consensus 78 ~c~~~~~~~~-----~d~~-~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~ 151 (363)
T PRK14961 78 ICKEIEKGLC-----LDLI-EIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIK 151 (363)
T ss_pred HHHHHhcCCC-----CceE-EecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeE
Confidence 0000000000 0000 0000 001222222221111 12345699999998654 466666544 34566
Q ss_pred EEEEccch-hhhhh----ccccee-cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhHhCCchhh
Q 002559 303 YLVTTRNE-AVYEI----TEAEKV-ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGHHPLT 364 (908)
Q Consensus 303 ILVTTR~~-~va~~----~~~~~~-~L~~~ea~~Lf~~~~~~~~~~~~~~l~~i~~~Iv~~cgGLPLA 364 (908)
+|++|.+. .+... +..... +++.++..+.+.+.+...+. .-.++.+..|++.++|.|-.
T Consensus 152 fIl~t~~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~---~i~~~al~~ia~~s~G~~R~ 216 (363)
T PRK14961 152 FILATTDVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKESI---DTDEYALKLIAYHAHGSMRD 216 (363)
T ss_pred EEEEcCChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHH
Confidence 67666543 33221 222222 78888877777766654332 12236677888888887753
No 34
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.85 E-value=0.00019 Score=84.77 Aligned_cols=181 Identities=18% Similarity=0.177 Sum_probs=98.7
Q ss_pred cCCCcCccHHHHHHHHHhccCCceEEEEEecCCCChHHHHHHHHhCCC--CccccceEEEeeeeeeccccccCCcchHHH
Q 002559 158 EQGYPISSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPP--ERFVGGAVELGFGQWCSRAACNGSKSDYQK 235 (908)
Q Consensus 158 ~~~~g~e~~~~~l~~LL~~~~~~~vV~I~GmgGiGKTtLA~~v~~~~~--~~F~~~~f~~~v~~wv~~~~~~~s~~~~~~ 235 (908)
...+|.+.-.+.+...+....-.+.+.++|++|+||||+|+.+++... ..+...| | .|. +- .
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~c-------g----~C~-sc----~ 77 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPC-------G----ECE-SC----L 77 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCC-------C----cCh-hh----H
Confidence 345677777777888777665467789999999999999999988653 1111000 0 011 00 0
Q ss_pred HHHHHHHHHHHHhccccccCCCCCCHHHHHHHHHHH-----hccCCeeEEEecCCch--hHHHHHhhhc---CCCcEEEE
Q 002559 236 RLARKISKFLVQIGFWKKIKDENSDLEYLCCLLQEA-----LYGKSILILLDDVWEQ--DIVERFAKLY---DNDCKYLV 305 (908)
Q Consensus 236 ~l~~~i~~~L~~lg~~~~~~~~~~~~~~l~~~l~~~-----L~~kr~LLVLDDV~~~--~~~e~l~~~~---~~gsrILV 305 (908)
.+....-..+..++ .......+...+ +.+. ..+++-++|+|+++.. ..++.+...+ ++.+.+|+
T Consensus 78 ~i~~~~h~dv~el~-----~~~~~~vd~iR~-l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il 151 (504)
T PRK14963 78 AVRRGAHPDVLEID-----AASNNSVEDVRD-LREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFIL 151 (504)
T ss_pred HHhcCCCCceEEec-----ccccCCHHHHHH-HHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEE
Confidence 00000000000000 001112222222 2222 2345678999999854 4567676555 23445555
Q ss_pred Ec-cchhhhh----hccccee-cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhHhCCchh
Q 002559 306 TT-RNEAVYE----ITEAEKV-ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGHHPL 363 (908)
Q Consensus 306 TT-R~~~va~----~~~~~~~-~L~~~ea~~Lf~~~~~~~~~~~~~~l~~i~~~Iv~~cgGLPL 363 (908)
+| ....+.. .+..... +++.++..+.+.+.+...+... .++....|++.++|.+-
T Consensus 152 ~t~~~~kl~~~I~SRc~~~~f~~ls~~el~~~L~~i~~~egi~i---~~~Al~~ia~~s~GdlR 212 (504)
T PRK14963 152 ATTEPEKMPPTILSRTQHFRFRRLTEEEIAGKLRRLLEAEGREA---EPEALQLVARLADGAMR 212 (504)
T ss_pred EcCChhhCChHHhcceEEEEecCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHH
Confidence 44 3333322 2222222 7899998888888776544322 23677889999998774
No 35
>PRK08727 hypothetical protein; Validated
Probab=97.84 E-value=0.00035 Score=74.50 Aligned_cols=138 Identities=18% Similarity=0.121 Sum_probs=74.9
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCCCCccccceEEEeeeeeeccccccCCcchHHHHHHHHHHHHHHHhccccccCCCCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACNGSKSDYQKRLARKISKFLVQIGFWKKIKDENS 259 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~~~~F~~~~f~~~v~~wv~~~~~~~s~~~~~~~l~~~i~~~L~~lg~~~~~~~~~~ 259 (908)
...+.|+|.+|+|||+|++++++....+.. .+.|+++. +....+..
T Consensus 41 ~~~l~l~G~~G~GKThL~~a~~~~~~~~~~-~~~y~~~~-----------------~~~~~~~~---------------- 86 (233)
T PRK08727 41 SDWLYLSGPAGTGKTHLALALCAAAEQAGR-SSAYLPLQ-----------------AAAGRLRD---------------- 86 (233)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCC-cEEEEeHH-----------------HhhhhHHH----------------
Confidence 456999999999999999999876553321 23333321 11111110
Q ss_pred CHHHHHHHHHHHhccCCeeEEEecCCch---hHHH-HHhhhc----CCCcEEEEEccch---------hhhhhcccc---
Q 002559 260 DLEYLCCLLQEALYGKSILILLDDVWEQ---DIVE-RFAKLY----DNDCKYLVTTRNE---------AVYEITEAE--- 319 (908)
Q Consensus 260 ~~~~l~~~l~~~L~~kr~LLVLDDV~~~---~~~e-~l~~~~----~~gsrILVTTR~~---------~va~~~~~~--- 319 (908)
.+ +.+ .+.-+|||||+... ..|. .+...+ ..|..||+||+.. ++.......
T Consensus 87 -------~~-~~l-~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~ 157 (233)
T PRK08727 87 -------AL-EAL-EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRI 157 (233)
T ss_pred -------HH-HHH-hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceE
Confidence 01 111 12358999999743 1232 222222 3567899999864 111111111
Q ss_pred ee-cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhHhCCchh
Q 002559 320 KV-ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGHHPL 363 (908)
Q Consensus 320 ~~-~L~~~ea~~Lf~~~~~~~~~~~~~~l~~i~~~Iv~~cgGLPL 363 (908)
.+ +++.++-.+++.+.+...+... .++...-|++.++|-.-
T Consensus 158 ~l~~~~~e~~~~iL~~~a~~~~l~l---~~e~~~~La~~~~rd~r 199 (233)
T PRK08727 158 GLPVLDDVARAAVLRERAQRRGLAL---DEAAIDWLLTHGERELA 199 (233)
T ss_pred EecCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHhCCCCHH
Confidence 11 5677777777776555433222 23666777777765443
No 36
>PRK08084 DNA replication initiation factor; Provisional
Probab=97.83 E-value=0.00019 Score=76.68 Aligned_cols=153 Identities=15% Similarity=0.142 Sum_probs=79.7
Q ss_pred HHHHHHHHhccCCceEEEEEecCCCChHHHHHHHHhCCCCccccceEEEeeeeeeccccccCCcchHHHHHHHHHHHHHH
Q 002559 167 SKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACNGSKSDYQKRLARKISKFLV 246 (908)
Q Consensus 167 ~~~l~~LL~~~~~~~vV~I~GmgGiGKTtLA~~v~~~~~~~F~~~~f~~~v~~wv~~~~~~~s~~~~~~~l~~~i~~~L~ 246 (908)
...+..+.... +...+.|+|++|+|||+|++.+++....+ ...+.|+++... ...
T Consensus 33 ~~~l~~~~~~~-~~~~l~l~Gp~G~GKThLl~a~~~~~~~~-~~~v~y~~~~~~-----------------~~~------ 87 (235)
T PRK08084 33 LAALQNALRQE-HSGYIYLWSREGAGRSHLLHAACAELSQR-GRAVGYVPLDKR-----------------AWF------ 87 (235)
T ss_pred HHHHHHHHhCC-CCCeEEEECCCCCCHHHHHHHHHHHHHhC-CCeEEEEEHHHH-----------------hhh------
Confidence 34444444333 34678899999999999999999865432 122333333110 000
Q ss_pred HhccccccCCCCCCHHHHHHHHHHHhccCCeeEEEecCCch---hHHHH-----HhhhcCCC-cEEEEEccchh------
Q 002559 247 QIGFWKKIKDENSDLEYLCCLLQEALYGKSILILLDDVWEQ---DIVER-----FAKLYDND-CKYLVTTRNEA------ 311 (908)
Q Consensus 247 ~lg~~~~~~~~~~~~~~l~~~l~~~L~~kr~LLVLDDV~~~---~~~e~-----l~~~~~~g-srILVTTR~~~------ 311 (908)
..+..+.+. . --+|++||+... ..|+. +......| .++|+||+...
T Consensus 88 --------------~~~~~~~~~----~-~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~ 148 (235)
T PRK08084 88 --------------VPEVLEGME----Q-LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLG 148 (235)
T ss_pred --------------hHHHHHHhh----h-CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcc
Confidence 001111111 1 247899999643 33432 22222344 47999998652
Q ss_pred ---hhhhccc---cee-cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhHhCCchhhHh
Q 002559 312 ---VYEITEA---EKV-ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGHHPLTVA 366 (908)
Q Consensus 312 ---va~~~~~---~~~-~L~~~ea~~Lf~~~~~~~~~~~~~~l~~i~~~Iv~~cgGLPLAI~ 366 (908)
+...+.. ..+ ++++++-.+++.+.+...+.. -.+++..-|++.+.|..-++.
T Consensus 149 ~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~---l~~~v~~~L~~~~~~d~r~l~ 207 (235)
T PRK08084 149 LPDLASRLDWGQIYKLQPLSDEEKLQALQLRARLRGFE---LPEDVGRFLLKRLDREMRTLF 207 (235)
T ss_pred cHHHHHHHhCCceeeecCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHhhcCCHHHHH
Confidence 1122211 112 567777777766655433322 223666777777776544333
No 37
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.81 E-value=0.00017 Score=83.49 Aligned_cols=185 Identities=15% Similarity=0.146 Sum_probs=99.2
Q ss_pred cCCCcCccHHHHHHHHHhccCCceEEEEEecCCCChHHHHHHHHhCCCCccccceEEEeeeeeeccccccCCcchHHHHH
Q 002559 158 EQGYPISSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACNGSKSDYQKRL 237 (908)
Q Consensus 158 ~~~~g~e~~~~~l~~LL~~~~~~~vV~I~GmgGiGKTtLA~~v~~~~~~~F~~~~f~~~v~~wv~~~~~~~s~~~~~~~l 237 (908)
...+|.+.-.+.+...+....-.+.+.++|+.|+||||+|+.+++.+...-... . ..| ..|. + -..+
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~-----~-~pC--g~C~-s----C~~i 84 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIG-----N-EPC--NECT-S----CLEI 84 (484)
T ss_pred HHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccC-----c-ccc--CCCc-H----HHHH
Confidence 345577777777887777654456789999999999999999998764221000 0 000 0111 0 0111
Q ss_pred HHHHHHHHHHhccccccCCCCCCHHHH---HHHHHHH-hccCCeeEEEecCCch--hHHHHHhhhc---CCCcEEE-EEc
Q 002559 238 ARKISKFLVQIGFWKKIKDENSDLEYL---CCLLQEA-LYGKSILILLDDVWEQ--DIVERFAKLY---DNDCKYL-VTT 307 (908)
Q Consensus 238 ~~~i~~~L~~lg~~~~~~~~~~~~~~l---~~~l~~~-L~~kr~LLVLDDV~~~--~~~e~l~~~~---~~gsrIL-VTT 307 (908)
.......+..+. .......++. ...+... ..++.-++|+|++... +.++.++..+ +....+| .||
T Consensus 85 ~~g~~~dviEId-----aas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTt 159 (484)
T PRK14956 85 TKGISSDVLEID-----AASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATT 159 (484)
T ss_pred HccCCccceeec-----hhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecC
Confidence 111000000000 0001122222 2222211 2356679999999844 5678777655 2345544 455
Q ss_pred cchhhhh----hccccee-cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhHhCCchh
Q 002559 308 RNEAVYE----ITEAEKV-ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGHHPL 363 (908)
Q Consensus 308 R~~~va~----~~~~~~~-~L~~~ea~~Lf~~~~~~~~~~~~~~l~~i~~~Iv~~cgGLPL 363 (908)
....+.. .|..... +++.++..+.+.+.+...+. .-.++....|++.++|.+-
T Consensus 160 e~~kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi---~~e~eAL~~Ia~~S~Gd~R 217 (484)
T PRK14956 160 EFHKIPETILSRCQDFIFKKVPLSVLQDYSEKLCKIENV---QYDQEGLFWIAKKGDGSVR 217 (484)
T ss_pred ChhhccHHHHhhhheeeecCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCChHH
Confidence 4444432 2332333 78888877777776654332 2224677889999999874
No 38
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=97.78 E-value=0.00031 Score=82.67 Aligned_cols=185 Identities=15% Similarity=0.164 Sum_probs=99.0
Q ss_pred CCCcCccHHHHHHHHHhccCCceEEEEEecCCCChHHHHHHHHhCCCCc--cccceEEEeeeeeeccccccCCcchHHHH
Q 002559 159 QGYPISSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPPER--FVGGAVELGFGQWCSRAACNGSKSDYQKR 236 (908)
Q Consensus 159 ~~~g~e~~~~~l~~LL~~~~~~~vV~I~GmgGiGKTtLA~~v~~~~~~~--F~~~~f~~~v~~wv~~~~~~~s~~~~~~~ 236 (908)
..+|.+.-.+.+...+..+.-.+.+.++|+.|+||||+|+.+++.+... ...+- .+.....|. .-..
T Consensus 22 dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~------~~~~C~~C~-----~C~~ 90 (507)
T PRK06645 22 ELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENT------TIKTCEQCT-----NCIS 90 (507)
T ss_pred HhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCc------CcCCCCCCh-----HHHH
Confidence 4457777777777766665446788999999999999999999865311 10000 000000011 0000
Q ss_pred HHHHHHHHHHHhccccccC-CCCCCHHHHHHHHHHH----hccCCeeEEEecCCch--hHHHHHhhhc---CCCcEEE-E
Q 002559 237 LARKISKFLVQIGFWKKIK-DENSDLEYLCCLLQEA----LYGKSILILLDDVWEQ--DIVERFAKLY---DNDCKYL-V 305 (908)
Q Consensus 237 l~~~i~~~L~~lg~~~~~~-~~~~~~~~l~~~l~~~----L~~kr~LLVLDDV~~~--~~~e~l~~~~---~~gsrIL-V 305 (908)
+.... ..... ... ......+++...+... ..+++-++|+|+++.. ..++.|...+ ++.+.+| .
T Consensus 91 i~~~~-----h~Dv~-eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~a 164 (507)
T PRK06645 91 FNNHN-----HPDII-EIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFA 164 (507)
T ss_pred HhcCC-----CCcEE-EeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEE
Confidence 00000 00000 000 0112333333333222 2356778999999864 5577777544 3455554 4
Q ss_pred Eccchhhhhh----ccccee-cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhHhCCchh
Q 002559 306 TTRNEAVYEI----TEAEKV-ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGHHPL 363 (908)
Q Consensus 306 TTR~~~va~~----~~~~~~-~L~~~ea~~Lf~~~~~~~~~~~~~~l~~i~~~Iv~~cgGLPL 363 (908)
||+...+... +..... +++.++....+.+.+...+... .++....|++.++|.+-
T Consensus 165 Tte~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~i---e~eAL~~Ia~~s~GslR 224 (507)
T PRK06645 165 TTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKT---DIEALRIIAYKSEGSAR 224 (507)
T ss_pred eCChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHH
Confidence 5555554432 222222 6888888888887776544222 23566778888887653
No 39
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=97.77 E-value=0.00047 Score=76.89 Aligned_cols=168 Identities=17% Similarity=0.166 Sum_probs=93.0
Q ss_pred CCCcCccHHHHHHHHHhccCCceEEEEEecCCCChHHHHHHHHhCCC-----CccccceEEEeeeeeeccccccCCcchH
Q 002559 159 QGYPISSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPP-----ERFVGGAVELGFGQWCSRAACNGSKSDY 233 (908)
Q Consensus 159 ~~~g~e~~~~~l~~LL~~~~~~~vV~I~GmgGiGKTtLA~~v~~~~~-----~~F~~~~f~~~v~~wv~~~~~~~s~~~~ 233 (908)
..+|.+.-.+.+...+..+.-.+...++|+.|+||||+|+.+++.+- ..+++-. .|.... +....
T Consensus 5 ~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~------~~~~~~----~~~i~ 74 (313)
T PRK05564 5 TIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDII------EFKPIN----KKSIG 74 (313)
T ss_pred hccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeE------Eecccc----CCCCC
Confidence 34466666667777776655577889999999999999999998542 1222211 111100 11111
Q ss_pred HHHHHHHHHHHHHHhccccccCCCCCCHHHHHHHHHHHhccCCeeEEEecCC--chhHHHHHhhhc---CCCcEEEEEcc
Q 002559 234 QKRLARKISKFLVQIGFWKKIKDENSDLEYLCCLLQEALYGKSILILLDDVW--EQDIVERFAKLY---DNDCKYLVTTR 308 (908)
Q Consensus 234 ~~~l~~~i~~~L~~lg~~~~~~~~~~~~~~l~~~l~~~L~~kr~LLVLDDV~--~~~~~e~l~~~~---~~gsrILVTTR 308 (908)
..++ +.+.+.+.. .-..+++-++|+||++ +.+.++.+...+ ++++.+|++|.
T Consensus 75 v~~i-r~~~~~~~~----------------------~p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~ 131 (313)
T PRK05564 75 VDDI-RNIIEEVNK----------------------KPYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCE 131 (313)
T ss_pred HHHH-HHHHHHHhc----------------------CcccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeC
Confidence 1111 112111100 0112445566666664 556788887655 45788888886
Q ss_pred chh-hhh----hccccee-cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhHhCCchhhHh
Q 002559 309 NEA-VYE----ITEAEKV-ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGHHPLTVA 366 (908)
Q Consensus 309 ~~~-va~----~~~~~~~-~L~~~ea~~Lf~~~~~~~~~~~~~~l~~i~~~Iv~~cgGLPLAI~ 366 (908)
+.+ +.. .+..... ++++++....+.+.+. ...++.++.++..++|.|.-+.
T Consensus 132 ~~~~ll~TI~SRc~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~~~l~~~~~g~~~~a~ 188 (313)
T PRK05564 132 NLEQILDTIKSRCQIYKLNRLSKEEIEKFISYKYN-------DIKEEEKKSAIAFSDGIPGKVE 188 (313)
T ss_pred ChHhCcHHHHhhceeeeCCCcCHHHHHHHHHHHhc-------CCCHHHHHHHHHHcCCCHHHHH
Confidence 653 221 2222222 6777777665544331 1112457788999999887554
No 40
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.76 E-value=0.00061 Score=81.27 Aligned_cols=183 Identities=19% Similarity=0.192 Sum_probs=102.0
Q ss_pred cCCCcCccHHHHHHHHHhccCCceEEEEEecCCCChHHHHHHHHhCCCCccccceEEEeeeeeeccccccCCcchHHHHH
Q 002559 158 EQGYPISSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACNGSKSDYQKRL 237 (908)
Q Consensus 158 ~~~~g~e~~~~~l~~LL~~~~~~~vV~I~GmgGiGKTtLA~~v~~~~~~~F~~~~f~~~v~~wv~~~~~~~s~~~~~~~l 237 (908)
...+|.+...+.+...+..+.-.+.+.++|+.|+||||+|+.+++.+.... +.....|..- ..
T Consensus 15 ddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~-----------~~~~~pCg~C--~s---- 77 (702)
T PRK14960 15 NELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCET-----------GVTSTPCEVC--AT---- 77 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCc-----------CCCCCCCccC--HH----
Confidence 456688888888888887665567889999999999999999988653110 0000011100 00
Q ss_pred HHHHHHHHHHhcccc--ccC-CCCCCHHHHHHHHHHH----hccCCeeEEEecCCch--hHHHHHhhhc---CCCcEEEE
Q 002559 238 ARKISKFLVQIGFWK--KIK-DENSDLEYLCCLLQEA----LYGKSILILLDDVWEQ--DIVERFAKLY---DNDCKYLV 305 (908)
Q Consensus 238 ~~~i~~~L~~lg~~~--~~~-~~~~~~~~l~~~l~~~----L~~kr~LLVLDDV~~~--~~~e~l~~~~---~~gsrILV 305 (908)
.+.+. .....+ ... ......++....+... ..+++-++|+|+|... ..++.|...+ +.+.++|+
T Consensus 78 C~~I~----~g~hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FIL 153 (702)
T PRK14960 78 CKAVN----EGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLF 153 (702)
T ss_pred HHHHh----cCCCCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEE
Confidence 00000 000000 000 0011233332222211 2356678999999854 4566666544 45667777
Q ss_pred Eccchh-hh----hhccccee-cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhHhCCchhh
Q 002559 306 TTRNEA-VY----EITEAEKV-ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGHHPLT 364 (908)
Q Consensus 306 TTR~~~-va----~~~~~~~~-~L~~~ea~~Lf~~~~~~~~~~~~~~l~~i~~~Iv~~cgGLPLA 364 (908)
+|.+.. +. ..+..... +++.++..+.+.+++...+.. -..+....|++.++|.+-.
T Consensus 154 aTtd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~---id~eAL~~IA~~S~GdLRd 215 (702)
T PRK14960 154 ATTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQIA---ADQDAIWQIAESAQGSLRD 215 (702)
T ss_pred EECChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHH
Confidence 776542 22 22222222 788888888877777554332 2236678899999997743
No 41
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.74 E-value=0.00043 Score=82.09 Aligned_cols=176 Identities=19% Similarity=0.181 Sum_probs=92.9
Q ss_pred cCCCcCccHHHHHHHHHhccCCceEEEEEecCCCChHHHHHHHHhCCCCc-----cccceEEEeeeeeeccccccCCcch
Q 002559 158 EQGYPISSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPPER-----FVGGAVELGFGQWCSRAACNGSKSD 232 (908)
Q Consensus 158 ~~~~g~e~~~~~l~~LL~~~~~~~vV~I~GmgGiGKTtLA~~v~~~~~~~-----F~~~~f~~~v~~wv~~~~~~~s~~~ 232 (908)
...+|.+.-.+.+...+..+.-.+.+.++|+.|+||||+|+.+++.+... -+|+. |.
T Consensus 16 ~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~-------------C~----- 77 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNK-------------CE----- 77 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcc-------------cH-----
Confidence 34557777777777777765456778899999999999999999754311 01110 00
Q ss_pred HHHHHHHHHHHHHHHhcccc--ccCC-CCCCHH---HHHHHHHHH-hccCCeeEEEecCCch--hHHHHHhhhc---CCC
Q 002559 233 YQKRLARKISKFLVQIGFWK--KIKD-ENSDLE---YLCCLLQEA-LYGKSILILLDDVWEQ--DIVERFAKLY---DND 300 (908)
Q Consensus 233 ~~~~l~~~i~~~L~~lg~~~--~~~~-~~~~~~---~l~~~l~~~-L~~kr~LLVLDDV~~~--~~~e~l~~~~---~~g 300 (908)
. ...+ ......+ .... .....+ ++...+... ..+++-++|+|++... ..++.|...+ +..
T Consensus 78 s----C~~i----~~~~~~dlieidaas~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~ 149 (546)
T PRK14957 78 N----CVAI----NNNSFIDLIEIDAASRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEY 149 (546)
T ss_pred H----HHHH----hcCCCCceEEeecccccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCC
Confidence 0 0000 0000000 0000 001112 222222211 2356679999999744 5567776555 345
Q ss_pred cEEE-EEccchhhhh----hccccee-cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhHhCCch
Q 002559 301 CKYL-VTTRNEAVYE----ITEAEKV-ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGHHP 362 (908)
Q Consensus 301 srIL-VTTR~~~va~----~~~~~~~-~L~~~ea~~Lf~~~~~~~~~~~~~~l~~i~~~Iv~~cgGLP 362 (908)
+.+| +||....+.. .+..... +++.++....+.+.+...+. .-.++....|++.++|.+
T Consensus 150 v~fIL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi---~~e~~Al~~Ia~~s~Gdl 214 (546)
T PRK14957 150 VKFILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENI---NSDEQSLEYIAYHAKGSL 214 (546)
T ss_pred ceEEEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCH
Confidence 5555 4554333332 2222222 68888877666666544332 223356677888888754
No 42
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.74 E-value=0.00056 Score=72.25 Aligned_cols=159 Identities=14% Similarity=0.188 Sum_probs=82.3
Q ss_pred HHHHHHHhccCC-ceEEEEEecCCCChHHHHHHHHhCCCCccc-cceEEEeeeeeeccccccCCcchHHHHHHHHHHHHH
Q 002559 168 KFLRKLLEQEET-HQVILIVGLSGIGKSCLARQVASDPPERFV-GGAVELGFGQWCSRAACNGSKSDYQKRLARKISKFL 245 (908)
Q Consensus 168 ~~l~~LL~~~~~-~~vV~I~GmgGiGKTtLA~~v~~~~~~~F~-~~~f~~~v~~wv~~~~~~~s~~~~~~~l~~~i~~~L 245 (908)
.....+.+..+. ...+.|+|..|+|||.|.+++++......+ ..++|++.. ++...+...+
T Consensus 21 ~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~-----------------~f~~~~~~~~ 83 (219)
T PF00308_consen 21 AAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAE-----------------EFIREFADAL 83 (219)
T ss_dssp HHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHH-----------------HHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHH-----------------HHHHHHHHHH
Confidence 334444444332 456789999999999999999987654332 345554431 2223332222
Q ss_pred HHhccccccCCCCCCHHHHHHHHHHHhccCCeeEEEecCCch---hHHH-HHh----hhcCCCcEEEEEccchh-hhhhc
Q 002559 246 VQIGFWKKIKDENSDLEYLCCLLQEALYGKSILILLDDVWEQ---DIVE-RFA----KLYDNDCKYLVTTRNEA-VYEIT 316 (908)
Q Consensus 246 ~~lg~~~~~~~~~~~~~~l~~~l~~~L~~kr~LLVLDDV~~~---~~~e-~l~----~~~~~gsrILVTTR~~~-va~~~ 316 (908)
.. ... ..+++.+.+ -=+|++||+... ..|+ .+. .....|.+||+|++... -....
T Consensus 84 ~~-----------~~~----~~~~~~~~~-~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~ 147 (219)
T PF00308_consen 84 RD-----------GEI----EEFKDRLRS-ADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGL 147 (219)
T ss_dssp HT-----------TSH----HHHHHHHCT-SSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS
T ss_pred Hc-----------ccc----hhhhhhhhc-CCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCcccccc
Confidence 11 122 234444543 357899999754 2232 222 22246889999996542 11111
Q ss_pred --------cc---cee-cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhHhCCch
Q 002559 317 --------EA---EKV-ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGHHP 362 (908)
Q Consensus 317 --------~~---~~~-~L~~~ea~~Lf~~~~~~~~~~~~~~l~~i~~~Iv~~cgGLP 362 (908)
.. ..+ +++.++-.+++.+.+...+..-+ +++++-|++.+.+..
T Consensus 148 ~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~---~~v~~~l~~~~~~~~ 202 (219)
T PF00308_consen 148 LPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKERGIELP---EEVIEYLARRFRRDV 202 (219)
T ss_dssp -HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT--S----HHHHHHHHHHTTSSH
T ss_pred ChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCc---HHHHHHHHHhhcCCH
Confidence 11 111 56777777777777665443322 255566666555443
No 43
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=97.73 E-value=0.00052 Score=82.66 Aligned_cols=184 Identities=19% Similarity=0.196 Sum_probs=101.1
Q ss_pred cCCCcCccHHHHHHHHHhccCCceEEEEEecCCCChHHHHHHHHhCCCCccccceEEEeeeeeeccccccCCcchHHHHH
Q 002559 158 EQGYPISSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACNGSKSDYQKRL 237 (908)
Q Consensus 158 ~~~~g~e~~~~~l~~LL~~~~~~~vV~I~GmgGiGKTtLA~~v~~~~~~~F~~~~f~~~v~~wv~~~~~~~s~~~~~~~l 237 (908)
...+|.+.-.+.+...+..+.-.+.+.++|..|+||||+|+.+++.+..... .....|..- ..
T Consensus 16 ~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~-----------~~~~pCg~C------~~ 78 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETG-----------ITATPCGEC------DN 78 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccC-----------CCCCCCCCC------HH
Confidence 4556878778888888876544567789999999999999999886542100 000011100 01
Q ss_pred HHHHHHHHHHhcccc--ccCCC-CCCHHHHHHHHHHH----hccCCeeEEEecCCch--hHHHHHhhhc---CCCcEEEE
Q 002559 238 ARKISKFLVQIGFWK--KIKDE-NSDLEYLCCLLQEA----LYGKSILILLDDVWEQ--DIVERFAKLY---DNDCKYLV 305 (908)
Q Consensus 238 ~~~i~~~L~~lg~~~--~~~~~-~~~~~~l~~~l~~~----L~~kr~LLVLDDV~~~--~~~e~l~~~~---~~gsrILV 305 (908)
.+.|. .-...+ ..... ...+++....+.+. ..+++-++|||++... ...+.|++.+ +..+++|+
T Consensus 79 C~~i~----~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL 154 (647)
T PRK07994 79 CREIE----QGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLL 154 (647)
T ss_pred HHHHH----cCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEE
Confidence 11110 000000 00000 11233333222221 2456679999999844 5677776554 34555555
Q ss_pred Eccc-hhhhh----hccccee-cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhHhCCchhhH
Q 002559 306 TTRN-EAVYE----ITEAEKV-ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGHHPLTV 365 (908)
Q Consensus 306 TTR~-~~va~----~~~~~~~-~L~~~ea~~Lf~~~~~~~~~~~~~~l~~i~~~Iv~~cgGLPLAI 365 (908)
+|.+ ..+.. .|....+ +|+.++....+.+++...+. ...++....|++.++|.|--+
T Consensus 155 ~Tt~~~kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i---~~e~~aL~~Ia~~s~Gs~R~A 217 (647)
T PRK07994 155 ATTDPQKLPVTILSRCLQFHLKALDVEQIRQQLEHILQAEQI---PFEPRALQLLARAADGSMRDA 217 (647)
T ss_pred ecCCccccchHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHH
Confidence 4444 44432 2222233 78898888877776644322 222366678999999977533
No 44
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=97.72 E-value=0.00032 Score=84.29 Aligned_cols=181 Identities=17% Similarity=0.211 Sum_probs=100.2
Q ss_pred cCCCcCccHHHHHHHHHhccCCceEEEEEecCCCChHHHHHHHHhCCCCc-----cccceEEEeeeeeeccccccCCcch
Q 002559 158 EQGYPISSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPPER-----FVGGAVELGFGQWCSRAACNGSKSD 232 (908)
Q Consensus 158 ~~~~g~e~~~~~l~~LL~~~~~~~vV~I~GmgGiGKTtLA~~v~~~~~~~-----F~~~~f~~~v~~wv~~~~~~~s~~~ 232 (908)
...+|.+.-.+.+...+..+.-.+.+.++|+.|+||||+|+.+++.+... -+|+. |.
T Consensus 16 ddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~-------------C~----- 77 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGV-------------CQ----- 77 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcc-------------cH-----
Confidence 45568888888888888876556788999999999999999998864311 11110 10
Q ss_pred HHHHHHHHHHHHHHHhccccccC-CCCCCHHHHHHHHHHH----hccCCeeEEEecCCchh--HHHHHhhhc---CCCcE
Q 002559 233 YQKRLARKISKFLVQIGFWKKIK-DENSDLEYLCCLLQEA----LYGKSILILLDDVWEQD--IVERFAKLY---DNDCK 302 (908)
Q Consensus 233 ~~~~l~~~i~~~L~~lg~~~~~~-~~~~~~~~l~~~l~~~----L~~kr~LLVLDDV~~~~--~~e~l~~~~---~~gsr 302 (908)
..+.+..- ...... ... .....++.+.+.+... ..+++-++|+|++.... ..+.|+..+ +..++
T Consensus 78 ----sCr~i~~g-~~~Dvl-EidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~ 151 (709)
T PRK08691 78 ----SCTQIDAG-RYVDLL-EIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVK 151 (709)
T ss_pred ----HHHHHhcc-CccceE-EEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcE
Confidence 00000000 000000 000 0111233333322211 23566789999998553 355555444 34667
Q ss_pred EEEEccch-hhhh----hccccee-cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhHhCCchhhH
Q 002559 303 YLVTTRNE-AVYE----ITEAEKV-ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGHHPLTV 365 (908)
Q Consensus 303 ILVTTR~~-~va~----~~~~~~~-~L~~~ea~~Lf~~~~~~~~~~~~~~l~~i~~~Iv~~cgGLPLAI 365 (908)
+|++|.+. .+.. .|....+ +++.++....+.+++...+.. -..+....|++.++|.+.-+
T Consensus 152 fILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~---id~eAL~~Ia~~A~GslRdA 217 (709)
T PRK08691 152 FILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIA---YEPPALQLLGRAAAGSMRDA 217 (709)
T ss_pred EEEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCC---cCHHHHHHHHHHhCCCHHHH
Confidence 77666544 2221 2212222 688888877777776554322 22367789999999887433
No 45
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.66 E-value=9.4e-05 Score=75.17 Aligned_cols=48 Identities=31% Similarity=0.386 Sum_probs=33.5
Q ss_pred CCcCccHHHHHHHHHh--ccCCceEEEEEecCCCChHHHHHHHHhCCCCc
Q 002559 160 GYPISSKSKFLRKLLE--QEETHQVILIVGLSGIGKSCLARQVASDPPER 207 (908)
Q Consensus 160 ~~g~e~~~~~l~~LL~--~~~~~~vV~I~GmgGiGKTtLA~~v~~~~~~~ 207 (908)
.+||++..+.+..++. .....+.+.|+|.+|+|||+|.++++.....+
T Consensus 2 fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 2 FVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp -TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 4689999999999884 33447999999999999999999999877655
No 46
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=97.63 E-value=0.0011 Score=73.94 Aligned_cols=170 Identities=15% Similarity=0.146 Sum_probs=91.9
Q ss_pred CCCcCccHHHHHHHHHhccCCceEEEEEecCCCChHHHHHHHHhCCCC-ccccceEEEeeeeeeccccccCCcchHHHHH
Q 002559 159 QGYPISSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPPE-RFVGGAVELGFGQWCSRAACNGSKSDYQKRL 237 (908)
Q Consensus 159 ~~~g~e~~~~~l~~LL~~~~~~~vV~I~GmgGiGKTtLA~~v~~~~~~-~F~~~~f~~~v~~wv~~~~~~~s~~~~~~~l 237 (908)
..+|.++..+.+..++... ..+.+.++|.+|+||||+|+.+++.... .+....+.++. +.......+
T Consensus 18 ~~~g~~~~~~~l~~~i~~~-~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~-----------~~~~~~~~~ 85 (319)
T PRK00440 18 EIVGQEEIVERLKSYVKEK-NMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNA-----------SDERGIDVI 85 (319)
T ss_pred HhcCcHHHHHHHHHHHhCC-CCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEecc-----------ccccchHHH
Confidence 4557777778888877654 3445799999999999999999987542 22211111110 111111111
Q ss_pred HHHHHHHHHHhccccccCCCCCCHHHHHHHHHHHhccCCeeEEEecCCch--hHHHHHhhh---cCCCcEEEEEccch-h
Q 002559 238 ARKISKFLVQIGFWKKIKDENSDLEYLCCLLQEALYGKSILILLDDVWEQ--DIVERFAKL---YDNDCKYLVTTRNE-A 311 (908)
Q Consensus 238 ~~~i~~~L~~lg~~~~~~~~~~~~~~l~~~l~~~L~~kr~LLVLDDV~~~--~~~e~l~~~---~~~gsrILVTTR~~-~ 311 (908)
...+...... .+ .....+-++++|+++.. +..+.+... .++.+++|+++... .
T Consensus 86 ~~~i~~~~~~------~~---------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~ 144 (319)
T PRK00440 86 RNKIKEFART------AP---------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSK 144 (319)
T ss_pred HHHHHHHHhc------CC---------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccc
Confidence 1111111100 00 00123468999998744 233444432 34556777766432 2
Q ss_pred hh----hhccccee-cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhHhCCchhh
Q 002559 312 VY----EITEAEKV-ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGHHPLT 364 (908)
Q Consensus 312 va----~~~~~~~~-~L~~~ea~~Lf~~~~~~~~~~~~~~l~~i~~~Iv~~cgGLPLA 364 (908)
+. ..+..... +++.++....+...+...+.. -.++....+++.++|.+--
T Consensus 145 l~~~l~sr~~~~~~~~l~~~ei~~~l~~~~~~~~~~---i~~~al~~l~~~~~gd~r~ 199 (319)
T PRK00440 145 IIDPIQSRCAVFRFSPLKKEAVAERLRYIAENEGIE---ITDDALEAIYYVSEGDMRK 199 (319)
T ss_pred cchhHHHHhheeeeCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHH
Confidence 21 22222222 688888877777766544322 2246778888888887654
No 47
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.62 E-value=0.00062 Score=77.58 Aligned_cols=51 Identities=27% Similarity=0.395 Sum_probs=37.7
Q ss_pred cCCCcCccHHHHHHHHHhcc------------CCceEEEEEecCCCChHHHHHHHHhCCCCcc
Q 002559 158 EQGYPISSKSKFLRKLLEQE------------ETHQVILIVGLSGIGKSCLARQVASDPPERF 208 (908)
Q Consensus 158 ~~~~g~e~~~~~l~~LL~~~------------~~~~vV~I~GmgGiGKTtLA~~v~~~~~~~F 208 (908)
....|+++..+.+...+... ..++-+.++|++|+|||++|+++++.....|
T Consensus 122 ~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~ 184 (364)
T TIGR01242 122 EDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATF 184 (364)
T ss_pred HHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCE
Confidence 34457787777777665321 1256689999999999999999999876544
No 48
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.62 E-value=0.00094 Score=77.91 Aligned_cols=148 Identities=13% Similarity=0.137 Sum_probs=77.2
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCCCCccc-cceEEEeeeeeeccccccCCcchHHHHHHHHHHHHHHHhccccccCCCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDPPERFV-GGAVELGFGQWCSRAACNGSKSDYQKRLARKISKFLVQIGFWKKIKDEN 258 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~~~~F~-~~~f~~~v~~wv~~~~~~~s~~~~~~~l~~~i~~~L~~lg~~~~~~~~~ 258 (908)
..-+.|+|.+|+|||+|++++++.....++ ..++|++. . ++...+...+. .
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~-------------~----~f~~~~~~~~~-----------~ 181 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS-------------E----KFLNDLVDSMK-----------E 181 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH-------------H----HHHHHHHHHHh-----------c
Confidence 445899999999999999999998764433 33444332 1 22223322111 0
Q ss_pred CCHHHHHHHHHHHhccCCeeEEEecCCch---h-----HHHHHhhhcCCCcEEEEEcc-chhhhh--------hcccc-e
Q 002559 259 SDLEYLCCLLQEALYGKSILILLDDVWEQ---D-----IVERFAKLYDNDCKYLVTTR-NEAVYE--------ITEAE-K 320 (908)
Q Consensus 259 ~~~~~l~~~l~~~L~~kr~LLVLDDV~~~---~-----~~e~l~~~~~~gsrILVTTR-~~~va~--------~~~~~-~ 320 (908)
...+ .+++....+.-+|++||+... . .+..+......|..||+||. .+.-.. .+... .
T Consensus 182 ~~~~----~f~~~~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~ 257 (440)
T PRK14088 182 GKLN----EFREKYRKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLV 257 (440)
T ss_pred ccHH----HHHHHHHhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCce
Confidence 1222 233333344568999999743 1 12222223345678899885 332111 11111 1
Q ss_pred --e-cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhHhCCch
Q 002559 321 --V-ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGHHP 362 (908)
Q Consensus 321 --~-~L~~~ea~~Lf~~~~~~~~~~~~~~l~~i~~~Iv~~cgGLP 362 (908)
+ +.+.+.-..++++.+......- -+++...|++.+.|..
T Consensus 258 v~i~~pd~e~r~~IL~~~~~~~~~~l---~~ev~~~Ia~~~~~~~ 299 (440)
T PRK14088 258 AKLEPPDEETRKKIARKMLEIEHGEL---PEEVLNFVAENVDDNL 299 (440)
T ss_pred EeeCCCCHHHHHHHHHHHHHhcCCCC---CHHHHHHHHhccccCH
Confidence 1 4555555666666554332221 2356666777666643
No 49
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=97.59 E-value=0.0017 Score=66.65 Aligned_cols=81 Identities=15% Similarity=0.197 Sum_probs=48.7
Q ss_pred cCCeeEEEecCCch--hHHHHHhhhc---CCCcEEEEEccch-hhhh----hccccee-cCChhhHHHHHHHHhhhcccc
Q 002559 274 GKSILILLDDVWEQ--DIVERFAKLY---DNDCKYLVTTRNE-AVYE----ITEAEKV-ELSKDDIMEISKSILLYHSLL 342 (908)
Q Consensus 274 ~kr~LLVLDDV~~~--~~~e~l~~~~---~~gsrILVTTR~~-~va~----~~~~~~~-~L~~~ea~~Lf~~~~~~~~~~ 342 (908)
+.+-++|+||+... +..+.+...+ ++.+.+|++|++. .+.. .+..... +++.++..+.+.+. +.
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~----gi- 169 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ----GI- 169 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHc----CC-
Confidence 45678999999754 3456665444 3456666666543 2222 1111112 67777766655543 11
Q ss_pred cCcchHHHHHHHHhHhCCchh
Q 002559 343 AEEELPAAAESLLERCGHHPL 363 (908)
Q Consensus 343 ~~~~l~~i~~~Iv~~cgGLPL 363 (908)
.++.+..|++.++|.|.
T Consensus 170 ----~~~~~~~i~~~~~g~~r 186 (188)
T TIGR00678 170 ----SEEAAELLLALAGGSPG 186 (188)
T ss_pred ----CHHHHHHHHHHcCCCcc
Confidence 13678899999999885
No 50
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.58 E-value=0.00081 Score=78.85 Aligned_cols=185 Identities=14% Similarity=0.191 Sum_probs=96.0
Q ss_pred cCCCcCccHHHHHHHHHhccCCceEEEEEecCCCChHHHHHHHHhCCCCc----c-ccceEEEeeeeeeccccccCCcch
Q 002559 158 EQGYPISSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPPER----F-VGGAVELGFGQWCSRAACNGSKSD 232 (908)
Q Consensus 158 ~~~~g~e~~~~~l~~LL~~~~~~~vV~I~GmgGiGKTtLA~~v~~~~~~~----F-~~~~f~~~v~~wv~~~~~~~s~~~ 232 (908)
...+|.+.-.+.+...+..+.-.+.+.++|++|+||||+|+.+++..... + +|+. |.
T Consensus 14 ~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~-------------c~----- 75 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNE-------------CR----- 75 (472)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcc-------------cH-----
Confidence 45567777777787777765445678999999999999999998865310 1 1110 00
Q ss_pred HHHHHHHHHHHHHHHhccccccCC-CCCCHHHHHHHHHHH-----hccCCeeEEEecCCch--hHHHHHhhhc--CCC-c
Q 002559 233 YQKRLARKISKFLVQIGFWKKIKD-ENSDLEYLCCLLQEA-----LYGKSILILLDDVWEQ--DIVERFAKLY--DND-C 301 (908)
Q Consensus 233 ~~~~l~~~i~~~L~~lg~~~~~~~-~~~~~~~l~~~l~~~-----L~~kr~LLVLDDV~~~--~~~e~l~~~~--~~g-s 301 (908)
.-..+...- ..... .... .....++.. .+.+. ..+++-++|+|++... ...+.+...+ +++ +
T Consensus 76 ~c~~i~~g~-----~~dv~-el~aa~~~gid~iR-~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~v 148 (472)
T PRK14962 76 ACRSIDEGT-----FMDVI-ELDAASNRGIDEIR-KIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHV 148 (472)
T ss_pred HHHHHhcCC-----CCccE-EEeCcccCCHHHHH-HHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcE
Confidence 000000000 00000 0000 011222222 12222 2245679999999744 4456666544 223 4
Q ss_pred EEEEEccc-hhhhh----hccccee-cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhHhCC-chhhHhHhhh
Q 002559 302 KYLVTTRN-EAVYE----ITEAEKV-ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGH-HPLTVAVMGK 370 (908)
Q Consensus 302 rILVTTR~-~~va~----~~~~~~~-~L~~~ea~~Lf~~~~~~~~~~~~~~l~~i~~~Iv~~cgG-LPLAI~~ig~ 370 (908)
.+|++|.+ ..+.. .+..... +++.++....+.+.+...+.. -.++....|++.++| ++.|+..+-.
T Consensus 149 v~Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~---i~~eal~~Ia~~s~GdlR~aln~Le~ 221 (472)
T PRK14962 149 VFVLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIE---IDREALSFIAKRASGGLRDALTMLEQ 221 (472)
T ss_pred EEEEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 44444433 33322 2222222 788888777777766543322 223667888887765 4566665544
No 51
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.58 E-value=0.0011 Score=76.47 Aligned_cols=189 Identities=13% Similarity=0.138 Sum_probs=97.3
Q ss_pred cCCCcCccHHHHHHHHHhccCCceEEEEEecCCCChHHHHHHHHhCCCC-c-cccceEEEeeeeeeccccccCCcchHHH
Q 002559 158 EQGYPISSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPPE-R-FVGGAVELGFGQWCSRAACNGSKSDYQK 235 (908)
Q Consensus 158 ~~~~g~e~~~~~l~~LL~~~~~~~vV~I~GmgGiGKTtLA~~v~~~~~~-~-F~~~~f~~~v~~wv~~~~~~~s~~~~~~ 235 (908)
...+|.+.-.+.+...+..+.-...+.++|+.|+||||+|+.+++.+.. . +.+..+.-+. +.+...|.
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~--~~~c~~c~-------- 85 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEV--TEPCGECE-------- 85 (397)
T ss_pred hhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccC--CCCCCCCH--------
Confidence 4556777777788888876544567889999999999999999886532 1 1000000000 00000111
Q ss_pred HHHHHHHHHHHHhccccccCC-CCCCHHHHHHHHHHHh-----ccCCeeEEEecCCch--hHHHHHhhhc---CCCcEEE
Q 002559 236 RLARKISKFLVQIGFWKKIKD-ENSDLEYLCCLLQEAL-----YGKSILILLDDVWEQ--DIVERFAKLY---DNDCKYL 304 (908)
Q Consensus 236 ~l~~~i~~~L~~lg~~~~~~~-~~~~~~~l~~~l~~~L-----~~kr~LLVLDDV~~~--~~~e~l~~~~---~~gsrIL 304 (908)
..+.+... ...... .... .....+++.+. .+.+ .+++-++|+|++... ..++.+...+ ++.+.+|
T Consensus 86 -~c~~~~~~-~~~n~~-~~~~~~~~~id~Ir~l-~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~I 161 (397)
T PRK14955 86 -SCRDFDAG-TSLNIS-EFDAASNNSVDDIRLL-RENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFI 161 (397)
T ss_pred -HHHHHhcC-CCCCeE-eecccccCCHHHHHHH-HHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEE
Confidence 00111000 000000 0000 11123333332 2222 245568899999854 4567666554 3455655
Q ss_pred EE-ccchhhhhh----ccccee-cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhHhCCchh
Q 002559 305 VT-TRNEAVYEI----TEAEKV-ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGHHPL 363 (908)
Q Consensus 305 VT-TR~~~va~~----~~~~~~-~L~~~ea~~Lf~~~~~~~~~~~~~~l~~i~~~Iv~~cgGLPL 363 (908)
++ ++...+... +..... ++++++..+.+...+...+. .-.++.+..|++.++|.+-
T Consensus 162 l~t~~~~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~---~i~~~al~~l~~~s~g~lr 223 (397)
T PRK14955 162 FATTELHKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGI---SVDADALQLIGRKAQGSMR 223 (397)
T ss_pred EEeCChHHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHH
Confidence 54 444444332 222222 67888877766666543322 1224677888999998664
No 52
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=97.56 E-value=0.0014 Score=74.22 Aligned_cols=182 Identities=16% Similarity=0.151 Sum_probs=96.3
Q ss_pred cCCCcCccHHHHHHHHHhccCCceEEEEEecCCCChHHHHHHHHhCCCC----ccc-cceEEEeeeeeeccccccCCcch
Q 002559 158 EQGYPISSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPPE----RFV-GGAVELGFGQWCSRAACNGSKSD 232 (908)
Q Consensus 158 ~~~~g~e~~~~~l~~LL~~~~~~~vV~I~GmgGiGKTtLA~~v~~~~~~----~F~-~~~f~~~v~~wv~~~~~~~s~~~ 232 (908)
...+|.+...+.+...+....-.+.+.++|++|+||||+|+.++..... .+. |+. |..
T Consensus 14 ~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~-------------c~~---- 76 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNE-------------CES---- 76 (355)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCC-------------CHH----
Confidence 3456777778888887776544678889999999999999999876531 111 110 100
Q ss_pred HHHHHHHHHHHHHHHhcccc--cc-CCCCCCHHH---HHHHHHHH-hccCCeeEEEecCCch--hHHHHHhhhc---CCC
Q 002559 233 YQKRLARKISKFLVQIGFWK--KI-KDENSDLEY---LCCLLQEA-LYGKSILILLDDVWEQ--DIVERFAKLY---DND 300 (908)
Q Consensus 233 ~~~~l~~~i~~~L~~lg~~~--~~-~~~~~~~~~---l~~~l~~~-L~~kr~LLVLDDV~~~--~~~e~l~~~~---~~g 300 (908)
-..+.. ....+ .. .......++ +...+... ..+++-++|+|+++.. ...+.+...+ ++.
T Consensus 77 -c~~~~~--------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~ 147 (355)
T TIGR02397 77 -CKEINS--------GSSLDVIEIDAASNNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEH 147 (355)
T ss_pred -HHHHhc--------CCCCCEEEeeccccCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCCccc
Confidence 000000 00000 00 000011111 11111111 2245568899998754 4455555444 345
Q ss_pred cEEEEEccchh-hhh----hccccee-cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhHhCCchhhHhHh
Q 002559 301 CKYLVTTRNEA-VYE----ITEAEKV-ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGHHPLTVAVM 368 (908)
Q Consensus 301 srILVTTR~~~-va~----~~~~~~~-~L~~~ea~~Lf~~~~~~~~~~~~~~l~~i~~~Iv~~cgGLPLAI~~i 368 (908)
+.+|++|.+.. +.. .+..... +++.++..+.+...+...+... .++.+..+++.++|.|..+...
T Consensus 148 ~~lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i---~~~a~~~l~~~~~g~~~~a~~~ 218 (355)
T TIGR02397 148 VVFILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKI---EDEALELIARAADGSLRDALSL 218 (355)
T ss_pred eeEEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCChHHHHHH
Confidence 66666665443 222 1211112 5777777777776665443222 2367788889999988655443
No 53
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=97.56 E-value=0.0012 Score=74.53 Aligned_cols=190 Identities=15% Similarity=0.157 Sum_probs=101.7
Q ss_pred cCCCcCccHHHHHHHHHhccCCceEEEEEecCCCChHHHHHHHHhCCCCc----cccceEEEeeeeeeccccccCCcchH
Q 002559 158 EQGYPISSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPPER----FVGGAVELGFGQWCSRAACNGSKSDY 233 (908)
Q Consensus 158 ~~~~g~e~~~~~l~~LL~~~~~~~vV~I~GmgGiGKTtLA~~v~~~~~~~----F~~~~f~~~v~~wv~~~~~~~s~~~~ 233 (908)
...+|.+.-.+.+...+..+.-+..+.|+|+.|+||||+|..+++.+-.+ +.... . ...|. ..
T Consensus 23 ~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~----~-----~~~~~--~c-- 89 (351)
T PRK09112 23 TRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPET----L-----ADPDP--AS-- 89 (351)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccc----c-----CCCCC--CC--
Confidence 45568788778888888776557789999999999999999998865321 11000 0 00010 00
Q ss_pred HHHHHHHHHHH----HHHhccccccC----CCCCCHHHHHHHHHHHhc-----cCCeeEEEecCCch--hHHHHHhhhc-
Q 002559 234 QKRLARKISKF----LVQIGFWKKIK----DENSDLEYLCCLLQEALY-----GKSILILLDDVWEQ--DIVERFAKLY- 297 (908)
Q Consensus 234 ~~~l~~~i~~~----L~~lg~~~~~~----~~~~~~~~l~~~l~~~L~-----~kr~LLVLDDV~~~--~~~e~l~~~~- 297 (908)
...+.+... +..+....... .....+++.. .+.+.+. +++-++|+|+++.. ...+.+...+
T Consensus 90 --~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR-~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LE 166 (351)
T PRK09112 90 --PVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIR-RVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLE 166 (351)
T ss_pred --HHHHHHHcCCCCCEEEeecccccccccccccCCHHHHH-HHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHh
Confidence 011111100 00000000000 0111344433 3344433 46678999999855 4455555433
Q ss_pred --CCCcE-EEEEccchhhhh----hccccee-cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhHhCCchhhHhHh
Q 002559 298 --DNDCK-YLVTTRNEAVYE----ITEAEKV-ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGHHPLTVAVM 368 (908)
Q Consensus 298 --~~gsr-ILVTTR~~~va~----~~~~~~~-~L~~~ea~~Lf~~~~~~~~~~~~~~l~~i~~~Iv~~cgGLPLAI~~i 368 (908)
+.++. |++|++...+.. .+....+ +++.++..+.+.+.... .. -.++....+++.++|.|.....+
T Consensus 167 Epp~~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~----~~-~~~~~~~~i~~~s~G~pr~Al~l 240 (351)
T PRK09112 167 EPPARALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSS----QG-SDGEITEALLQRSKGSVRKALLL 240 (351)
T ss_pred cCCCCceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcc----cC-CCHHHHHHHHHHcCCCHHHHHHH
Confidence 34455 444444433322 2222222 78999988877663211 11 12356788999999999855543
No 54
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.55 E-value=0.019 Score=69.77 Aligned_cols=105 Identities=15% Similarity=0.071 Sum_probs=61.7
Q ss_pred HHHHHHHHhccCCeeEEEecCCch--hHHHHHhhhcCCC---cEEEE--Eccchhh-h----hhccccee-cCChhhHHH
Q 002559 264 LCCLLQEALYGKSILILLDDVWEQ--DIVERFAKLYDND---CKYLV--TTRNEAV-Y----EITEAEKV-ELSKDDIME 330 (908)
Q Consensus 264 l~~~l~~~L~~kr~LLVLDDV~~~--~~~e~l~~~~~~g---srILV--TTR~~~v-a----~~~~~~~~-~L~~~ea~~ 330 (908)
.+..+.+.+++++++++-|+.|.. ..|+.+...+..+ ..+++ ||++... . ..+..... +++.+|.++
T Consensus 281 ~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~ 360 (615)
T TIGR02903 281 LQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIAL 360 (615)
T ss_pred HHHHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHH
Confidence 467788888888888887766643 4577666555432 23444 6665432 1 12222222 789999999
Q ss_pred HHHHHhhhcccccCcchHHHHHHHHhHhCCchhhHhHhhhh
Q 002559 331 ISKSILLYHSLLAEEELPAAAESLLERCGHHPLTVAVMGKA 371 (908)
Q Consensus 331 Lf~~~~~~~~~~~~~~l~~i~~~Iv~~cgGLPLAI~~ig~~ 371 (908)
++++.+....... .++..+.|.+++..-+-|+..++..
T Consensus 361 Il~~~a~~~~v~l---s~eal~~L~~ys~~gRraln~L~~~ 398 (615)
T TIGR02903 361 IVLNAAEKINVHL---AAGVEELIARYTIEGRKAVNILADV 398 (615)
T ss_pred HHHHHHHHcCCCC---CHHHHHHHHHCCCcHHHHHHHHHHH
Confidence 9888765432211 1355566666665556666655443
No 55
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.55 E-value=0.00098 Score=80.14 Aligned_cols=183 Identities=19% Similarity=0.257 Sum_probs=98.5
Q ss_pred cCCCcCccHHHHHHHHHhccCCceEEEEEecCCCChHHHHHHHHhCCCCc--c-ccceEEEeeeeeeccccccCCcchHH
Q 002559 158 EQGYPISSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPPER--F-VGGAVELGFGQWCSRAACNGSKSDYQ 234 (908)
Q Consensus 158 ~~~~g~e~~~~~l~~LL~~~~~~~vV~I~GmgGiGKTtLA~~v~~~~~~~--F-~~~~f~~~v~~wv~~~~~~~s~~~~~ 234 (908)
...+|.+.-.+.+...+..+.-.+.+.++|..|+||||+|+.+++.+.-. . ..+. ....|..- .
T Consensus 16 ~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~---------~~~pCg~C--~-- 82 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGI---------TATPCGVC--Q-- 82 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCC---------CCCCCCcc--H--
Confidence 45568777788888888876557788999999999999999998754310 0 0000 00001100 0
Q ss_pred HHHHHHHHHHHHHhcccc---ccC-CCCCCHHHHHHHHHHH----hccCCeeEEEecCCch--hHHHHHhhhc---CCCc
Q 002559 235 KRLARKISKFLVQIGFWK---KIK-DENSDLEYLCCLLQEA----LYGKSILILLDDVWEQ--DIVERFAKLY---DNDC 301 (908)
Q Consensus 235 ~~l~~~i~~~L~~lg~~~---~~~-~~~~~~~~l~~~l~~~----L~~kr~LLVLDDV~~~--~~~e~l~~~~---~~gs 301 (908)
..+.| .. |... ... .....+++..+.+... ..++.-++|||+|+.. ..++.++..+ +..+
T Consensus 83 --~C~~i----~~-g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~ 155 (618)
T PRK14951 83 --ACRDI----DS-GRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYL 155 (618)
T ss_pred --HHHHH----Hc-CCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCe
Confidence 00001 00 0000 000 0011333333333221 1234568899999854 5677777655 3455
Q ss_pred EEEEEccc-hhhh----hhccccee-cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhHhCCchh
Q 002559 302 KYLVTTRN-EAVY----EITEAEKV-ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGHHPL 363 (908)
Q Consensus 302 rILVTTR~-~~va----~~~~~~~~-~L~~~ea~~Lf~~~~~~~~~~~~~~l~~i~~~Iv~~cgGLPL 363 (908)
++|++|.+ ..+. ..+..... +++.++..+.+.+.+...+... ..+....|++.++|.+-
T Consensus 156 ~fIL~Ttd~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~i---e~~AL~~La~~s~GslR 220 (618)
T PRK14951 156 KFVLATTDPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPA---EPQALRLLARAARGSMR 220 (618)
T ss_pred EEEEEECCchhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHH
Confidence 66655533 3332 22222233 6888887777777665443322 23567788888888664
No 56
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=97.55 E-value=0.016 Score=65.82 Aligned_cols=111 Identities=20% Similarity=0.155 Sum_probs=69.7
Q ss_pred CCcCccHHHHHHHHHhc---cCCceEEEEEecCCCChHHHHHHHHhCCCCccccc-eEEEeeeeeeccccccCCcchHHH
Q 002559 160 GYPISSKSKFLRKLLEQ---EETHQVILIVGLSGIGKSCLARQVASDPPERFVGG-AVELGFGQWCSRAACNGSKSDYQK 235 (908)
Q Consensus 160 ~~g~e~~~~~l~~LL~~---~~~~~vV~I~GmgGiGKTtLA~~v~~~~~~~F~~~-~f~~~v~~wv~~~~~~~s~~~~~~ 235 (908)
..+|++..+.+...|.. +..+.-+.|+|.+|+|||+.++.+.+......... ++++|.... ....
T Consensus 19 l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~-----------~t~~ 87 (366)
T COG1474 19 LPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLEL-----------RTPY 87 (366)
T ss_pred ccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeC-----------CCHH
Confidence 45677777777766653 22244489999999999999999999887554433 566665221 1223
Q ss_pred HHHHHHHHHHHHhccccccCCCCCCHHHHHHHHHHHhcc--CCeeEEEecCCch
Q 002559 236 RLARKISKFLVQIGFWKKIKDENSDLEYLCCLLQEALYG--KSILILLDDVWEQ 287 (908)
Q Consensus 236 ~l~~~i~~~L~~lg~~~~~~~~~~~~~~l~~~l~~~L~~--kr~LLVLDDV~~~ 287 (908)
+++..|...+. +.+.......+....+.+.+.. +.+++|||+++..
T Consensus 88 ~i~~~i~~~~~------~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L 135 (366)
T COG1474 88 QVLSKILNKLG------KVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDAL 135 (366)
T ss_pred HHHHHHHHHcC------CCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhh
Confidence 44444444332 1222223445555666666654 7899999999754
No 57
>PF14516 AAA_35: AAA-like domain
Probab=97.55 E-value=0.016 Score=65.12 Aligned_cols=198 Identities=15% Similarity=0.175 Sum_probs=105.8
Q ss_pred CcCccHHHHHHHHHhccCCceEEEEEecCCCChHHHHHHHHhCCCC-ccccceEEEeeeeeeccccccCCcchHHHHHHH
Q 002559 161 YPISSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPPE-RFVGGAVELGFGQWCSRAACNGSKSDYQKRLAR 239 (908)
Q Consensus 161 ~g~e~~~~~l~~LL~~~~~~~vV~I~GmgGiGKTtLA~~v~~~~~~-~F~~~~f~~~v~~wv~~~~~~~s~~~~~~~l~~ 239 (908)
+.|..-.+.+-+-+... -..+.|.|+-.+|||+|...+.+..+. .| .++++|+...-+. ...+.......+..
T Consensus 14 i~R~~~e~~~~~~i~~~--G~~~~I~apRq~GKTSll~~l~~~l~~~~~--~~v~id~~~~~~~--~~~~~~~f~~~~~~ 87 (331)
T PF14516_consen 14 IERPPAEQECYQEIVQP--GSYIRIKAPRQMGKTSLLLRLLERLQQQGY--RCVYIDLQQLGSA--IFSDLEQFLRWFCE 87 (331)
T ss_pred cCchHHHHHHHHHHhcC--CCEEEEECcccCCHHHHHHHHHHHHHHCCC--EEEEEEeecCCCc--ccCCHHHHHHHHHH
Confidence 36663444444333332 358899999999999999999887753 44 4677777532110 01122223334444
Q ss_pred HHHHHHHHhcccccc----CCCCCCHHHHHHHHHHHh-c--cCCeeEEEecCCchh--------HHHHHhhhcCC-----
Q 002559 240 KISKFLVQIGFWKKI----KDENSDLEYLCCLLQEAL-Y--GKSILILLDDVWEQD--------IVERFAKLYDN----- 299 (908)
Q Consensus 240 ~i~~~L~~lg~~~~~----~~~~~~~~~l~~~l~~~L-~--~kr~LLVLDDV~~~~--------~~e~l~~~~~~----- 299 (908)
.+.+.| +..... .............+.+.+ . +++.+|+||+|+..- -+..|+.|...
T Consensus 88 ~i~~~L---~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~ 164 (331)
T PF14516_consen 88 EISRQL---KLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNP 164 (331)
T ss_pred HHHHHc---CCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCc
Confidence 443332 211000 011123333444455432 2 579999999997441 23333333321
Q ss_pred --Cc-E-EEEEccchhhhhhcc--------ccee-cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhHhCCchhhHh
Q 002559 300 --DC-K-YLVTTRNEAVYEITE--------AEKV-ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGHHPLTVA 366 (908)
Q Consensus 300 --gs-r-ILVTTR~~~va~~~~--------~~~~-~L~~~ea~~Lf~~~~~~~~~~~~~~l~~i~~~Iv~~cgGLPLAI~ 366 (908)
.. + |++.+....+..... .-.+ +++.+|...|..+.- ..- ..+..+.|...+||+|.-+.
T Consensus 165 ~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~----~~~---~~~~~~~l~~~tgGhP~Lv~ 237 (331)
T PF14516_consen 165 IWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYG----LEF---SQEQLEQLMDWTGGHPYLVQ 237 (331)
T ss_pred ccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhh----ccC---CHHHHHHHHHHHCCCHHHHH
Confidence 11 1 222221111111110 1111 689999888866542 111 12348999999999999999
Q ss_pred Hhhhhhhc
Q 002559 367 VMGKALRK 374 (908)
Q Consensus 367 ~ig~~L~~ 374 (908)
.++..+..
T Consensus 238 ~~~~~l~~ 245 (331)
T PF14516_consen 238 KACYLLVE 245 (331)
T ss_pred HHHHHHHH
Confidence 99999975
No 58
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.55 E-value=0.0011 Score=77.66 Aligned_cols=179 Identities=16% Similarity=0.196 Sum_probs=94.5
Q ss_pred cCCCcCccHHHHHHHHHhccCCceEEEEEecCCCChHHHHHHHHhCCCCc-----cccceEEEeeeeeeccccccCCcch
Q 002559 158 EQGYPISSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPPER-----FVGGAVELGFGQWCSRAACNGSKSD 232 (908)
Q Consensus 158 ~~~~g~e~~~~~l~~LL~~~~~~~vV~I~GmgGiGKTtLA~~v~~~~~~~-----F~~~~f~~~v~~wv~~~~~~~s~~~ 232 (908)
...+|.+.-.+.+...+..+.-.+.+.++|+.|+||||+|+.+++.+.-. -+|+. |.
T Consensus 13 ~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~-------------C~----- 74 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGT-------------CH----- 74 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccc-------------cH-----
Confidence 45567777777777777665446688999999999999999998743210 01110 00
Q ss_pred HHHHHHHHHHHHHHHhccccccC-CCCCCHHHHHHHHHHH----hccCCeeEEEecCCch--hHHHHHhhhc---CCCcE
Q 002559 233 YQKRLARKISKFLVQIGFWKKIK-DENSDLEYLCCLLQEA----LYGKSILILLDDVWEQ--DIVERFAKLY---DNDCK 302 (908)
Q Consensus 233 ~~~~l~~~i~~~L~~lg~~~~~~-~~~~~~~~l~~~l~~~----L~~kr~LLVLDDV~~~--~~~e~l~~~~---~~gsr 302 (908)
. ...|... ...... ... ......++....+... ..+++-++|+|++... +.++.|...+ ++.++
T Consensus 75 ~----C~~i~~~-~~~Dv~-eidaas~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~ 148 (491)
T PRK14964 75 N----CISIKNS-NHPDVI-EIDAASNTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVK 148 (491)
T ss_pred H----HHHHhcc-CCCCEE-EEecccCCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeE
Confidence 0 0000000 000000 000 0011233322222211 1245668999999744 4566666544 34566
Q ss_pred EEEEc-cchhhhhh----ccccee-cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhHhCCchh
Q 002559 303 YLVTT-RNEAVYEI----TEAEKV-ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGHHPL 363 (908)
Q Consensus 303 ILVTT-R~~~va~~----~~~~~~-~L~~~ea~~Lf~~~~~~~~~~~~~~l~~i~~~Iv~~cgGLPL 363 (908)
+|++| ....+... +..... +++.++..+.+.+.+...+.. -.++....|++.++|.+-
T Consensus 149 fIlatte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~---i~~eAL~lIa~~s~GslR 212 (491)
T PRK14964 149 FILATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIE---HDEESLKLIAENSSGSMR 212 (491)
T ss_pred EEEEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHH
Confidence 55554 44444332 222222 677777777777766544322 223566788888887654
No 59
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.52 E-value=0.0018 Score=76.78 Aligned_cols=48 Identities=23% Similarity=0.331 Sum_probs=39.2
Q ss_pred cCCCcCccHHHHHHHHHhccCCceEEEEEecCCCChHHHHHHHHhCCC
Q 002559 158 EQGYPISSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 158 ~~~~g~e~~~~~l~~LL~~~~~~~vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
...+|.+.-.+.+...+..+.-...+.++|+.|+||||+|+.+++...
T Consensus 16 ~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~ 63 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLN 63 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhc
Confidence 455688888888888887664467788999999999999999998653
No 60
>PRK05642 DNA replication initiation factor; Validated
Probab=97.52 E-value=0.00064 Score=72.56 Aligned_cols=26 Identities=23% Similarity=0.379 Sum_probs=22.4
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
...+.|+|..|+|||.|++.+++...
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~ 70 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFE 70 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 36788999999999999999987543
No 61
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.49 E-value=0.0019 Score=72.02 Aligned_cols=48 Identities=10% Similarity=0.260 Sum_probs=38.2
Q ss_pred cCCCcCccHHHHHHHHHhccCCceEEEEEecCCCChHHHHHHHHhCCC
Q 002559 158 EQGYPISSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 158 ~~~~g~e~~~~~l~~LL~~~~~~~vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
...+|.++..+.+..++..+.-+.++.++|++|+||||+|+.+++...
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~~ 68 (316)
T PHA02544 21 DECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEVG 68 (316)
T ss_pred HHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHhC
Confidence 344577777778888887654467888899999999999999998753
No 62
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.48 E-value=0.0016 Score=77.63 Aligned_cols=176 Identities=19% Similarity=0.225 Sum_probs=94.3
Q ss_pred cCCCcCccHHHHHHHHHhccCCceEEEEEecCCCChHHHHHHHHhCCCCcc-----ccceEEEeeeeeeccccccCCcch
Q 002559 158 EQGYPISSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPPERF-----VGGAVELGFGQWCSRAACNGSKSD 232 (908)
Q Consensus 158 ~~~~g~e~~~~~l~~LL~~~~~~~vV~I~GmgGiGKTtLA~~v~~~~~~~F-----~~~~f~~~v~~wv~~~~~~~s~~~ 232 (908)
...+|.+.-.+.+...+..+.-.+.+.++|+.|+||||+|+.+++.+.... +|+. |..
T Consensus 16 ~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~-------------C~~---- 78 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGV-------------CSA---- 78 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCC-------------CHH----
Confidence 345677777788888877654467778999999999999999987653210 1111 100
Q ss_pred HHHHHHHHHHHHHHHhcc-cc--ccC-CCCCCHHHHHHHHHHH----hccCCeeEEEecCCch--hHHHHHhhhc---CC
Q 002559 233 YQKRLARKISKFLVQIGF-WK--KIK-DENSDLEYLCCLLQEA----LYGKSILILLDDVWEQ--DIVERFAKLY---DN 299 (908)
Q Consensus 233 ~~~~l~~~i~~~L~~lg~-~~--~~~-~~~~~~~~l~~~l~~~----L~~kr~LLVLDDV~~~--~~~e~l~~~~---~~ 299 (908)
- ..+. . |. .+ ... ......+++...+... ..+++-++|+|+++.. ...+.+...+ +.
T Consensus 79 -C----~~i~----~-~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~ 148 (527)
T PRK14969 79 -C----LEID----S-GRFVDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPE 148 (527)
T ss_pred -H----HHHh----c-CCCCceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCC
Confidence 0 0000 0 00 00 000 0011233333222221 1346679999999855 4466666544 34
Q ss_pred CcEEEEEccc-hhhhh----hccccee-cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhHhCCchh
Q 002559 300 DCKYLVTTRN-EAVYE----ITEAEKV-ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGHHPL 363 (908)
Q Consensus 300 gsrILVTTR~-~~va~----~~~~~~~-~L~~~ea~~Lf~~~~~~~~~~~~~~l~~i~~~Iv~~cgGLPL 363 (908)
.+.+|++|.+ ..+.. .+..... +++.++..+.+.+.+...+. ...++....|++.++|.+-
T Consensus 149 ~~~fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi---~~~~~al~~la~~s~Gslr 215 (527)
T PRK14969 149 HVKFILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENI---PFDATALQLLARAAAGSMR 215 (527)
T ss_pred CEEEEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHH
Confidence 5555555533 33322 1222222 67777777666666543332 1223556778888888663
No 63
>PTZ00202 tuzin; Provisional
Probab=97.48 E-value=0.0013 Score=74.54 Aligned_cols=52 Identities=19% Similarity=0.365 Sum_probs=42.3
Q ss_pred cccccCCCcCccHHHHHHHHHhccC--CceEEEEEecCCCChHHHHHHHHhCCC
Q 002559 154 KVKAEQGYPISSKSKFLRKLLEQEE--THQVILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 154 ~~~~~~~~g~e~~~~~l~~LL~~~~--~~~vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
+.+++.++||+.++..+...|.+.+ .+++++|+|++|+|||||++.+.....
T Consensus 258 Pa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~ 311 (550)
T PTZ00202 258 PAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG 311 (550)
T ss_pred CCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC
Confidence 3445666799999999999997532 267999999999999999999997654
No 64
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=97.46 E-value=0.0028 Score=75.58 Aligned_cols=184 Identities=13% Similarity=0.126 Sum_probs=93.7
Q ss_pred cCCCcCccHHHHHHHHHhccCCceEEEEEecCCCChHHHHHHHHhCCCCccccceEEEeeeeeeccccccCCcchHHHHH
Q 002559 158 EQGYPISSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACNGSKSDYQKRL 237 (908)
Q Consensus 158 ~~~~g~e~~~~~l~~LL~~~~~~~vV~I~GmgGiGKTtLA~~v~~~~~~~F~~~~f~~~v~~wv~~~~~~~s~~~~~~~l 237 (908)
...+|.+.-.+.+...+..+.-.+.+.++|+.|+||||+|+.+++.+...- |.....|... ..-
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~-----------~~~~~~Cg~C--~sC--- 79 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLN-----------PKDGDCCNSC--SVC--- 79 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCC-----------CCCCCCCccc--HHH---
Confidence 345577777777777776654567888999999999999999988653110 0000011100 000
Q ss_pred HHHHHHHHHHhccccccCC-CCCCHHHHHHHHHHH----hccCCeeEEEecCCch--hHHHHHhhhc---CCCcEEEEEc
Q 002559 238 ARKISKFLVQIGFWKKIKD-ENSDLEYLCCLLQEA----LYGKSILILLDDVWEQ--DIVERFAKLY---DNDCKYLVTT 307 (908)
Q Consensus 238 ~~~i~~~L~~lg~~~~~~~-~~~~~~~l~~~l~~~----L~~kr~LLVLDDV~~~--~~~e~l~~~~---~~gsrILVTT 307 (908)
+.+.... ..... .... .....++....+... ..+++-++|+|+++.. ..++.|...+ +..+.+|++|
T Consensus 80 -r~i~~~~-h~Dii-eIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~T 156 (605)
T PRK05896 80 -ESINTNQ-SVDIV-ELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFAT 156 (605)
T ss_pred -HHHHcCC-CCceE-EeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEEC
Confidence 0000000 00000 0000 011223222222111 1234457999999753 5566666544 3345555444
Q ss_pred -cchhhhh----hccccee-cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhHhCCchh
Q 002559 308 -RNEAVYE----ITEAEKV-ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGHHPL 363 (908)
Q Consensus 308 -R~~~va~----~~~~~~~-~L~~~ea~~Lf~~~~~~~~~~~~~~l~~i~~~Iv~~cgGLPL 363 (908)
....+.. .+..... +++.++....+...+...+... .++.+..+++.++|.+-
T Consensus 157 t~~~KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~I---s~eal~~La~lS~GdlR 215 (605)
T PRK05896 157 TEFQKIPLTIISRCQRYNFKKLNNSELQELLKSIAKKEKIKI---EDNAIDKIADLADGSLR 215 (605)
T ss_pred CChHhhhHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCcHH
Confidence 4333332 1222222 6788887777776665433211 23567788888888553
No 65
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.45 E-value=0.0025 Score=79.34 Aligned_cols=177 Identities=14% Similarity=0.142 Sum_probs=96.2
Q ss_pred cCCCcCccHHHHHHHHHhccCCceEEEEEecCCCChHHHHHHHHhCCCC--c---cccceEEEeeeeeeccccccCCcch
Q 002559 158 EQGYPISSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPPE--R---FVGGAVELGFGQWCSRAACNGSKSD 232 (908)
Q Consensus 158 ~~~~g~e~~~~~l~~LL~~~~~~~vV~I~GmgGiGKTtLA~~v~~~~~~--~---F~~~~f~~~v~~wv~~~~~~~s~~~ 232 (908)
...+|.+...+.|...+..+.-.+.+.++|..|+||||+|+.+++.+.- . -.|+. |.+
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~-------------C~s---- 77 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGE-------------CDS---- 77 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcc-------------cHH----
Confidence 3456777777788888876544667889999999999999999887641 1 11211 110
Q ss_pred HHHHHHHHHHHHHHHh--cccc--ccC-CCCCCHHHHHHHHHH----HhccCCeeEEEecCCch--hHHHHHhhhc---C
Q 002559 233 YQKRLARKISKFLVQI--GFWK--KIK-DENSDLEYLCCLLQE----ALYGKSILILLDDVWEQ--DIVERFAKLY---D 298 (908)
Q Consensus 233 ~~~~l~~~i~~~L~~l--g~~~--~~~-~~~~~~~~l~~~l~~----~L~~kr~LLVLDDV~~~--~~~e~l~~~~---~ 298 (908)
.+.| ..- +..+ ... .....++++...... -..+++-++|||+++.. ..++.|+..+ +
T Consensus 78 -----C~~~----~~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP 148 (824)
T PRK07764 78 -----CVAL----APGGPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPP 148 (824)
T ss_pred -----HHHH----HcCCCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCC
Confidence 0000 000 0000 000 011123333322111 12345568899999854 5566666555 3
Q ss_pred CCcEEEEEc-cchhhhhh----ccccee-cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhHhCCchh
Q 002559 299 NDCKYLVTT-RNEAVYEI----TEAEKV-ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGHHPL 363 (908)
Q Consensus 299 ~gsrILVTT-R~~~va~~----~~~~~~-~L~~~ea~~Lf~~~~~~~~~~~~~~l~~i~~~Iv~~cgGLPL 363 (908)
..+.+|++| ....+... +..... +++.++..+.+.+++...+.. -..+....|++.++|.+.
T Consensus 149 ~~~~fIl~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~---id~eal~lLa~~sgGdlR 216 (824)
T PRK07764 149 EHLKFIFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVP---VEPGVLPLVIRAGGGSVR 216 (824)
T ss_pred CCeEEEEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHH
Confidence 455655544 44444432 222222 677777777776665443321 223556778888888763
No 66
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.44 E-value=0.0023 Score=72.98 Aligned_cols=165 Identities=18% Similarity=0.215 Sum_probs=90.8
Q ss_pred cCCCcCccHHHHHHHHHhccCCceEEEEEecCCCChHHHHHHHHhCCCCc--------cccceEEEeeeeeeccccccCC
Q 002559 158 EQGYPISSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPPER--------FVGGAVELGFGQWCSRAACNGS 229 (908)
Q Consensus 158 ~~~~g~e~~~~~l~~LL~~~~~~~vV~I~GmgGiGKTtLA~~v~~~~~~~--------F~~~~f~~~v~~wv~~~~~~~s 229 (908)
...+|.+.-.+.+...+..+.-.+.+.++|++|+||||+|+.+++..... |...++.++- .
T Consensus 17 ~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~-----------~ 85 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDA-----------A 85 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEecc-----------c
Confidence 34567777777788887765446789999999999999999998865421 1111111100 0
Q ss_pred cchHHHHHHHHHHHHHHHhccccccCCCCCCHHHHHHHHHH----HhccCCeeEEEecCCch--hHHHHHhhhc---CCC
Q 002559 230 KSDYQKRLARKISKFLVQIGFWKKIKDENSDLEYLCCLLQE----ALYGKSILILLDDVWEQ--DIVERFAKLY---DND 300 (908)
Q Consensus 230 ~~~~~~~l~~~i~~~L~~lg~~~~~~~~~~~~~~l~~~l~~----~L~~kr~LLVLDDV~~~--~~~e~l~~~~---~~g 300 (908)
. ....++....+.+ -..+++-++|+|++... ..++.+...+ +..
T Consensus 86 ~---------------------------~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~ 138 (367)
T PRK14970 86 S---------------------------NNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAH 138 (367)
T ss_pred c---------------------------CCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCc
Confidence 0 0011111111111 01234568999998744 3466665433 334
Q ss_pred cEEEEEc-cchhhhh----hccccee-cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhHhCCchh
Q 002559 301 CKYLVTT-RNEAVYE----ITEAEKV-ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGHHPL 363 (908)
Q Consensus 301 srILVTT-R~~~va~----~~~~~~~-~L~~~ea~~Lf~~~~~~~~~~~~~~l~~i~~~Iv~~cgGLPL 363 (908)
+.+|++| ....+.. .+..... ++++++....+...+...+... .++....|++.++|.+-
T Consensus 139 ~~~Il~~~~~~kl~~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~i---~~~al~~l~~~~~gdlr 204 (367)
T PRK14970 139 AIFILATTEKHKIIPTILSRCQIFDFKRITIKDIKEHLAGIAVKEGIKF---EDDALHIIAQKADGALR 204 (367)
T ss_pred eEEEEEeCCcccCCHHHHhcceeEecCCccHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHhCCCCHH
Confidence 5555544 3333322 2222222 5677777776666665443322 23667778888887543
No 67
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.43 E-value=0.0015 Score=62.00 Aligned_cols=37 Identities=41% Similarity=0.528 Sum_probs=28.9
Q ss_pred eEEEEEecCCCChHHHHHHHHhCCCCccccceEEEeee
Q 002559 181 QVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFG 218 (908)
Q Consensus 181 ~vV~I~GmgGiGKTtLA~~v~~~~~~~F~~~~f~~~v~ 218 (908)
..+.|+|++|+||||+|+.+++...... ..+++++..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~-~~~~~~~~~ 39 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPG-GGVIYIDGE 39 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCC-CCEEEECCE
Confidence 5789999999999999999999877543 235555554
No 68
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.42 E-value=0.0025 Score=76.78 Aligned_cols=192 Identities=13% Similarity=0.116 Sum_probs=99.5
Q ss_pred cCCCcCccHHHHHHHHHhccCCceEEEEEecCCCChHHHHHHHHhCCCCccccceEEEeeeeeeccccccCCcchHHHHH
Q 002559 158 EQGYPISSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACNGSKSDYQKRL 237 (908)
Q Consensus 158 ~~~~g~e~~~~~l~~LL~~~~~~~vV~I~GmgGiGKTtLA~~v~~~~~~~F~~~~f~~~v~~wv~~~~~~~s~~~~~~~l 237 (908)
...+|.+...+.+...+..+.-...+.++|+.|+||||+|+.+++.+.-...+.. -+ .+...|... ..
T Consensus 24 ~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~----~~--~~~~~cg~c--~~---- 91 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGD----GG--PTIDLCGVG--EH---- 91 (598)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCcccc----CC--CccccCccc--HH----
Confidence 4556888888888888877655678889999999999999999987642211000 00 000001100 00
Q ss_pred HHHHHHHHHHhccccccCCCCCCHHHHHHHHHHH----hccCCeeEEEecCCch--hHHHHHhhhc---CCCcEEEE-Ec
Q 002559 238 ARKISKFLVQIGFWKKIKDENSDLEYLCCLLQEA----LYGKSILILLDDVWEQ--DIVERFAKLY---DNDCKYLV-TT 307 (908)
Q Consensus 238 ~~~i~~~L~~lg~~~~~~~~~~~~~~l~~~l~~~----L~~kr~LLVLDDV~~~--~~~e~l~~~~---~~gsrILV-TT 307 (908)
.+.|..- ...+...-.......++++...+... ..+++-++|+|++... ...+.|...+ ++.+.+|+ ||
T Consensus 92 C~~i~~g-~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tt 170 (598)
T PRK09111 92 CQAIMEG-RHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATT 170 (598)
T ss_pred HHHHhcC-CCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeC
Confidence 0111000 00000000000112333333222211 1245568999999754 4566666544 45666555 44
Q ss_pred cchhhhh----hccccee-cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhHhCCchhhH
Q 002559 308 RNEAVYE----ITEAEKV-ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGHHPLTV 365 (908)
Q Consensus 308 R~~~va~----~~~~~~~-~L~~~ea~~Lf~~~~~~~~~~~~~~l~~i~~~Iv~~cgGLPLAI 365 (908)
....+.. .+..... +++.++....+.+.+...+..- .++....|++.++|.+.-+
T Consensus 171 e~~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i---~~eAl~lIa~~a~Gdlr~a 230 (598)
T PRK09111 171 EIRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEV---EDEALALIARAAEGSVRDG 230 (598)
T ss_pred ChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHH
Confidence 4443332 2222222 5778777777777665443222 2366788888888876543
No 69
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.41 E-value=0.0021 Score=75.46 Aligned_cols=148 Identities=15% Similarity=0.124 Sum_probs=79.2
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCCCCcccc-ceEEEeeeeeeccccccCCcchHHHHHHHHHHHHHHHhccccccCCCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDPPERFVG-GAVELGFGQWCSRAACNGSKSDYQKRLARKISKFLVQIGFWKKIKDEN 258 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~~~~F~~-~~f~~~v~~wv~~~~~~~s~~~~~~~l~~~i~~~L~~lg~~~~~~~~~ 258 (908)
...+.|+|.+|+|||+|++++++....+++. .++|++. ......+...+. .
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~-------------~~~~~~~~~~~~-----------~---- 199 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTS-------------EKFTNDFVNALR-----------N---- 199 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEH-------------HHHHHHHHHHHH-----------c----
Confidence 4568899999999999999999987655432 2333322 112222222221 0
Q ss_pred CCHHHHHHHHHHHhccCCeeEEEecCCch---h-HHHHHh----hhcCCCcEEEEEccchh--h-------hhhccc-ce
Q 002559 259 SDLEYLCCLLQEALYGKSILILLDDVWEQ---D-IVERFA----KLYDNDCKYLVTTRNEA--V-------YEITEA-EK 320 (908)
Q Consensus 259 ~~~~~l~~~l~~~L~~kr~LLVLDDV~~~---~-~~e~l~----~~~~~gsrILVTTR~~~--v-------a~~~~~-~~ 320 (908)
...+ .+.+.+. +.-+|||||+... + ..+.+. .....|..||+||.... + ...+.. ..
T Consensus 200 ~~~~----~~~~~~~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~ 274 (450)
T PRK00149 200 NTME----EFKEKYR-SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLT 274 (450)
T ss_pred CcHH----HHHHHHh-cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCee
Confidence 1122 2333333 3458999999632 1 112222 22345667888886541 1 111211 11
Q ss_pred e---cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhHhCCchh
Q 002559 321 V---ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGHHPL 363 (908)
Q Consensus 321 ~---~L~~~ea~~Lf~~~~~~~~~~~~~~l~~i~~~Iv~~cgGLPL 363 (908)
+ +.+.++-..++.+.+...... -.+++..-|++.++|..-
T Consensus 275 v~i~~pd~~~r~~il~~~~~~~~~~---l~~e~l~~ia~~~~~~~R 317 (450)
T PRK00149 275 VDIEPPDLETRIAILKKKAEEEGID---LPDEVLEFIAKNITSNVR 317 (450)
T ss_pred EEecCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHcCcCCCHH
Confidence 1 566666677777666543221 223666777777776554
No 70
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=97.40 E-value=0.0036 Score=71.76 Aligned_cols=175 Identities=14% Similarity=0.063 Sum_probs=91.4
Q ss_pred CCCcCccHHHHHHHHHhccC---------CceEEEEEecCCCChHHHHHHHHhCCCCc----cccceEEEeeeeeecccc
Q 002559 159 QGYPISSKSKFLRKLLEQEE---------THQVILIVGLSGIGKSCLARQVASDPPER----FVGGAVELGFGQWCSRAA 225 (908)
Q Consensus 159 ~~~g~e~~~~~l~~LL~~~~---------~~~vV~I~GmgGiGKTtLA~~v~~~~~~~----F~~~~f~~~v~~wv~~~~ 225 (908)
..+|.+.-.+.+...+..+. -++.+.++|++|+|||++|+.+++..--. -+|+.
T Consensus 6 ~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~------------- 72 (394)
T PRK07940 6 DLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGE------------- 72 (394)
T ss_pred hccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCC-------------
Confidence 34566677777777776643 35678899999999999999998754211 11110
Q ss_pred ccCCcchHHHHHHHHHHHHHHHhcccc----ccCCCCCCHHHHHHHHHHHh-----ccCCeeEEEecCCch--hHHHHHh
Q 002559 226 CNGSKSDYQKRLARKISKFLVQIGFWK----KIKDENSDLEYLCCLLQEAL-----YGKSILILLDDVWEQ--DIVERFA 294 (908)
Q Consensus 226 ~~~s~~~~~~~l~~~i~~~L~~lg~~~----~~~~~~~~~~~l~~~l~~~L-----~~kr~LLVLDDV~~~--~~~e~l~ 294 (908)
|. .- +.+. ...+++ .........+++...+ +.. .+++-++|+|+++.. ...+.+.
T Consensus 73 C~-----~C----~~~~----~~~hpD~~~i~~~~~~i~i~~iR~l~-~~~~~~p~~~~~kViiIDead~m~~~aanaLL 138 (394)
T PRK07940 73 CR-----AC----RTVL----AGTHPDVRVVAPEGLSIGVDEVRELV-TIAARRPSTGRWRIVVIEDADRLTERAANALL 138 (394)
T ss_pred CH-----HH----HHHh----cCCCCCEEEeccccccCCHHHHHHHH-HHHHhCcccCCcEEEEEechhhcCHHHHHHHH
Confidence 10 00 0000 000000 0000111233322222 222 245568888999854 4445555
Q ss_pred hhc---CCCcEEEEEccch-hhhhh----ccccee-cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhHhCCchhhH
Q 002559 295 KLY---DNDCKYLVTTRNE-AVYEI----TEAEKV-ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGHHPLTV 365 (908)
Q Consensus 295 ~~~---~~gsrILVTTR~~-~va~~----~~~~~~-~L~~~ea~~Lf~~~~~~~~~~~~~~l~~i~~~Iv~~cgGLPLAI 365 (908)
..+ ++++.+|++|.+. .+... +..... +++.++..+.+.+..+ ..++.+..++..++|.|...
T Consensus 139 k~LEep~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~--------~~~~~a~~la~~s~G~~~~A 210 (394)
T PRK07940 139 KAVEEPPPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDG--------VDPETARRAARASQGHIGRA 210 (394)
T ss_pred HHhhcCCCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcC--------CCHHHHHHHHHHcCCCHHHH
Confidence 433 4466666666554 33322 222222 6777777665543211 11356788999999999754
Q ss_pred hHh
Q 002559 366 AVM 368 (908)
Q Consensus 366 ~~i 368 (908)
..+
T Consensus 211 ~~l 213 (394)
T PRK07940 211 RRL 213 (394)
T ss_pred HHH
Confidence 433
No 71
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=97.39 E-value=0.0021 Score=72.95 Aligned_cols=190 Identities=16% Similarity=0.098 Sum_probs=100.1
Q ss_pred cCCCcCccHHHHHHHHHhccCCceEEEEEecCCCChHHHHHHHHhCCCC-c-cccceEEEeeeeeeccccccCCcchHHH
Q 002559 158 EQGYPISSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPPE-R-FVGGAVELGFGQWCSRAACNGSKSDYQK 235 (908)
Q Consensus 158 ~~~~g~e~~~~~l~~LL~~~~~~~vV~I~GmgGiGKTtLA~~v~~~~~~-~-F~~~~f~~~v~~wv~~~~~~~s~~~~~~ 235 (908)
...+|.+.-.+.+...+..+.-...+.++|+.|+||+|+|..+++.+-- . ..+..+-.. -.....|. .-.
T Consensus 19 ~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~---~~~l~~~~--~c~--- 90 (365)
T PRK07471 19 TALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPP---PTSLAIDP--DHP--- 90 (365)
T ss_pred hhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccc---cccccCCC--CCh---
Confidence 4556877777778877777654678899999999999999999875421 1 111000000 00000011 000
Q ss_pred HHHHHHHHHHHHhcccc-----c---cCC----CCCCHHHHHHHHHHHhc-----cCCeeEEEecCCch--hHHHHHhhh
Q 002559 236 RLARKISKFLVQIGFWK-----K---IKD----ENSDLEYLCCLLQEALY-----GKSILILLDDVWEQ--DIVERFAKL 296 (908)
Q Consensus 236 ~l~~~i~~~L~~lg~~~-----~---~~~----~~~~~~~l~~~l~~~L~-----~kr~LLVLDDV~~~--~~~e~l~~~ 296 (908)
..+.+ .....++ . ... ..-.+++. +.+.+.+. +++-++|+||++.. ...+.|...
T Consensus 91 -~c~~i----~~~~HPDl~~i~~~~~~~~~~~~~~I~Vdqi-R~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~ 164 (365)
T PRK07471 91 -VARRI----AAGAHGGLLTLERSWNEKGKRLRTVITVDEV-RELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKV 164 (365)
T ss_pred -HHHHH----HccCCCCeEEEecccccccccccccccHHHH-HHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHH
Confidence 00111 0000000 0 000 11134442 23333332 45678999999744 455666544
Q ss_pred c---CCCcEEEEEccchh-hhhhcc--ccee---cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhHhCCchhhHhH
Q 002559 297 Y---DNDCKYLVTTRNEA-VYEITE--AEKV---ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGHHPLTVAV 367 (908)
Q Consensus 297 ~---~~gsrILVTTR~~~-va~~~~--~~~~---~L~~~ea~~Lf~~~~~~~~~~~~~~l~~i~~~Iv~~cgGLPLAI~~ 367 (908)
+ ++++.+|++|.+.+ +..... ...+ +++.++..+++.+... ..+ .+....++..++|.|+....
T Consensus 165 LEepp~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~-----~~~--~~~~~~l~~~s~Gsp~~Al~ 237 (365)
T PRK07471 165 LEEPPARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGP-----DLP--DDPRAALAALAEGSVGRALR 237 (365)
T ss_pred HhcCCCCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcc-----cCC--HHHHHHHHHHcCCCHHHHHH
Confidence 4 45667777776653 322111 2222 7899998887665421 111 12236789999999986554
Q ss_pred h
Q 002559 368 M 368 (908)
Q Consensus 368 i 368 (908)
+
T Consensus 238 l 238 (365)
T PRK07471 238 L 238 (365)
T ss_pred H
Confidence 4
No 72
>PRK06620 hypothetical protein; Validated
Probab=97.38 E-value=0.0017 Score=68.40 Aligned_cols=24 Identities=29% Similarity=0.311 Sum_probs=21.5
Q ss_pred eEEEEEecCCCChHHHHHHHHhCC
Q 002559 181 QVILIVGLSGIGKSCLARQVASDP 204 (908)
Q Consensus 181 ~vV~I~GmgGiGKTtLA~~v~~~~ 204 (908)
+.+-|||++|+|||+|++.+++..
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~ 68 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLS 68 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhcc
Confidence 668999999999999999988765
No 73
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.34 E-value=0.002 Score=80.15 Aligned_cols=47 Identities=19% Similarity=0.221 Sum_probs=36.4
Q ss_pred cCCCcCccHHHHHHHHHhccCCceEEEEEecCCCChHHHHHHHHhCCC
Q 002559 158 EQGYPISSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 158 ~~~~g~e~~~~~l~~LL~~~~~~~vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
.+.+|+++..+.+...|..... .-+.++|++|+|||++|+.++++..
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~~-~n~lL~G~pG~GKT~l~~~la~~~~ 228 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRKK-NNPLLVGEPGVGKTAIAEGLALRIA 228 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCCC-CceEEECCCCCCHHHHHHHHHHHHH
Confidence 4567888887777777765433 3456999999999999999998763
No 74
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.33 E-value=0.0036 Score=72.45 Aligned_cols=148 Identities=16% Similarity=0.145 Sum_probs=76.8
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCCCCccc-cceEEEeeeeeeccccccCCcchHHHHHHHHHHHHHHHhccccccCCCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDPPERFV-GGAVELGFGQWCSRAACNGSKSDYQKRLARKISKFLVQIGFWKKIKDEN 258 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~~~~F~-~~~f~~~v~~wv~~~~~~~s~~~~~~~l~~~i~~~L~~lg~~~~~~~~~ 258 (908)
...+.|+|.+|+|||+|++++++....+.+ ..++|++. ......+...+ . .
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~-------------~~~~~~~~~~~----~-------~---- 187 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSS-------------EKFTNDFVNAL----R-------N---- 187 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEH-------------HHHHHHHHHHH----H-------c----
Confidence 456889999999999999999987654432 23444322 11222222222 1 0
Q ss_pred CCHHHHHHHHHHHhccCCeeEEEecCCch---hH-HHHHhh----hcCCCcEEEEEccch-h-h-------hhhccc-ce
Q 002559 259 SDLEYLCCLLQEALYGKSILILLDDVWEQ---DI-VERFAK----LYDNDCKYLVTTRNE-A-V-------YEITEA-EK 320 (908)
Q Consensus 259 ~~~~~l~~~l~~~L~~kr~LLVLDDV~~~---~~-~e~l~~----~~~~gsrILVTTR~~-~-v-------a~~~~~-~~ 320 (908)
...+. +.+.+.+ .-+|||||+... +. .+.+.. ....|..+|+||... . + ...+.. ..
T Consensus 188 ~~~~~----~~~~~~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~ 262 (405)
T TIGR00362 188 NKMEE----FKEKYRS-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLV 262 (405)
T ss_pred CCHHH----HHHHHHh-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeE
Confidence 12222 2333332 348899999743 11 122222 224567788888642 1 1 111111 11
Q ss_pred e---cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhHhCCchh
Q 002559 321 V---ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGHHPL 363 (908)
Q Consensus 321 ~---~L~~~ea~~Lf~~~~~~~~~~~~~~l~~i~~~Iv~~cgGLPL 363 (908)
+ +.+.++-.+++.+.+......- .+++...|++.+.|.+-
T Consensus 263 v~i~~pd~~~r~~il~~~~~~~~~~l---~~e~l~~ia~~~~~~~r 305 (405)
T TIGR00362 263 VDIEPPDLETRLAILQKKAEEEGLEL---PDEVLEFIAKNIRSNVR 305 (405)
T ss_pred EEeCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHhcCCCHH
Confidence 2 4556666666666655432221 23566667777666544
No 75
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.32 E-value=0.0053 Score=74.33 Aligned_cols=189 Identities=13% Similarity=0.162 Sum_probs=98.5
Q ss_pred cCCCcCccHHHHHHHHHhccCCceEEEEEecCCCChHHHHHHHHhCCCCccccceEEEeeeeeeccccccCCcchHHHHH
Q 002559 158 EQGYPISSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACNGSKSDYQKRL 237 (908)
Q Consensus 158 ~~~~g~e~~~~~l~~LL~~~~~~~vV~I~GmgGiGKTtLA~~v~~~~~~~F~~~~f~~~v~~wv~~~~~~~s~~~~~~~l 237 (908)
...+|.+.-.+.+...+..+.-.+.+.++|+.|+||||+|+.+++.+.......- + ..|. .-. .
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~-------~---~~c~--~c~----~ 79 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPK-------G---RPCG--TCE----M 79 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC-------C---CCCc--cCH----H
Confidence 4556877777788877776544567789999999999999999976532110000 0 0011 000 1
Q ss_pred HHHHHHHHHHhccccccCC-CCCCHHHHHHHHHHHh-----ccCCeeEEEecCCch--hHHHHHhhhc---CCCcEEEEE
Q 002559 238 ARKISKFLVQIGFWKKIKD-ENSDLEYLCCLLQEAL-----YGKSILILLDDVWEQ--DIVERFAKLY---DNDCKYLVT 306 (908)
Q Consensus 238 ~~~i~~~L~~lg~~~~~~~-~~~~~~~l~~~l~~~L-----~~kr~LLVLDDV~~~--~~~e~l~~~~---~~gsrILVT 306 (908)
.+.+.... ..+.. .... .....+++...+ +.+ .+++-++|+|++... +..+.|...+ +..+.+|++
T Consensus 80 c~~i~~~~-~~d~~-~i~~~~~~~vd~ir~ii-~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~ 156 (585)
T PRK14950 80 CRAIAEGS-AVDVI-EMDAASHTSVDDAREII-ERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILA 156 (585)
T ss_pred HHHHhcCC-CCeEE-EEeccccCCHHHHHHHH-HHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEE
Confidence 11111000 00000 0000 112333332222 221 245678999999744 5566666544 345555555
Q ss_pred cc-chhhhhhcc--ccee---cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhHhCCchhhHhHh
Q 002559 307 TR-NEAVYEITE--AEKV---ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGHHPLTVAVM 368 (908)
Q Consensus 307 TR-~~~va~~~~--~~~~---~L~~~ea~~Lf~~~~~~~~~~~~~~l~~i~~~Iv~~cgGLPLAI~~i 368 (908)
|. ...+..... ...+ +++..+....+.+.+...+... .++.+..|++.++|.+..+...
T Consensus 157 t~~~~kll~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~i---~~eal~~La~~s~Gdlr~al~~ 221 (585)
T PRK14950 157 TTEVHKVPATILSRCQRFDFHRHSVADMAAHLRKIAAAEGINL---EPGALEAIARAATGSMRDAENL 221 (585)
T ss_pred eCChhhhhHHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHH
Confidence 53 333332111 1122 5677776666666665443222 2367788999999887644433
No 76
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.32 E-value=0.0042 Score=65.82 Aligned_cols=40 Identities=23% Similarity=0.323 Sum_probs=29.4
Q ss_pred cHHHHHHHHHhccCCceEEEEEecCCCChHHHHHHHHhCC
Q 002559 165 SKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDP 204 (908)
Q Consensus 165 ~~~~~l~~LL~~~~~~~vV~I~GmgGiGKTtLA~~v~~~~ 204 (908)
.....+..+.........+.|+|..|+|||+||+.+++..
T Consensus 27 ~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~ 66 (227)
T PRK08903 27 ELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADA 66 (227)
T ss_pred HHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3444555554433345678899999999999999999864
No 77
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.30 E-value=0.0044 Score=74.30 Aligned_cols=180 Identities=15% Similarity=0.137 Sum_probs=95.1
Q ss_pred cCCCcCccHHHHHHHHHhccCCceEEEEEecCCCChHHHHHHHHhCCCCc-----cccceEEEeeeeeeccccccCCcch
Q 002559 158 EQGYPISSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPPER-----FVGGAVELGFGQWCSRAACNGSKSD 232 (908)
Q Consensus 158 ~~~~g~e~~~~~l~~LL~~~~~~~vV~I~GmgGiGKTtLA~~v~~~~~~~-----F~~~~f~~~v~~wv~~~~~~~s~~~ 232 (908)
...+|.+.-.+.+...+..+.-.+.+.++|+.|+||||+|+.+++.+.-. -+|+. | ..|.
T Consensus 13 ~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~--------C--~~C~----- 77 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGV--------C--ESCV----- 77 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccc--------c--HHHH-----
Confidence 45567777778888888765446678899999999999999999865411 11111 0 0010
Q ss_pred HHHHHHHHHHHHH-HHhccccccCC-CCCCHHHHHH---HHHHH-hccCCeeEEEecCCc--hhHHHHHhhhc---CCCc
Q 002559 233 YQKRLARKISKFL-VQIGFWKKIKD-ENSDLEYLCC---LLQEA-LYGKSILILLDDVWE--QDIVERFAKLY---DNDC 301 (908)
Q Consensus 233 ~~~~l~~~i~~~L-~~lg~~~~~~~-~~~~~~~l~~---~l~~~-L~~kr~LLVLDDV~~--~~~~e~l~~~~---~~gs 301 (908)
.+...- ...... .... ....+++..+ .+... ..+++-++|+|++.. ....+.|+..+ +..+
T Consensus 78 -------~i~~~~~~~~dvi-eidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~ 149 (584)
T PRK14952 78 -------ALAPNGPGSIDVV-ELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHL 149 (584)
T ss_pred -------HhhcccCCCceEE-EeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCe
Confidence 000000 000000 0000 0112333222 11111 134566889999974 35666666544 3455
Q ss_pred EEE-EEccchhhhhh----ccccee-cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhHhCCchh
Q 002559 302 KYL-VTTRNEAVYEI----TEAEKV-ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGHHPL 363 (908)
Q Consensus 302 rIL-VTTR~~~va~~----~~~~~~-~L~~~ea~~Lf~~~~~~~~~~~~~~l~~i~~~Iv~~cgGLPL 363 (908)
.+| +||....+... +..... +++.++..+.+.+++...+..- ..+....|++.++|.+-
T Consensus 150 ~fIL~tte~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i---~~~al~~Ia~~s~GdlR 214 (584)
T PRK14952 150 IFIFATTEPEKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVV---DDAVYPLVIRAGGGSPR 214 (584)
T ss_pred EEEEEeCChHhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHH
Confidence 544 45554444432 222222 6788887777766665433211 23566778888888663
No 78
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.30 E-value=0.0044 Score=74.79 Aligned_cols=188 Identities=13% Similarity=0.136 Sum_probs=96.9
Q ss_pred cCCCcCccHHHHHHHHHhccCCceEEEEEecCCCChHHHHHHHHhCCCCc--cccceEEEeeeeeeccccccCCcchHHH
Q 002559 158 EQGYPISSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPPER--FVGGAVELGFGQWCSRAACNGSKSDYQK 235 (908)
Q Consensus 158 ~~~~g~e~~~~~l~~LL~~~~~~~vV~I~GmgGiGKTtLA~~v~~~~~~~--F~~~~f~~~v~~wv~~~~~~~s~~~~~~ 235 (908)
...+|.+.-.+.+...+..+.-...+.++|+.|+||||+|+.+++.+--. +.+..+.-+. ...|..- ..
T Consensus 16 ~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~-----~~~Cg~C--~s-- 86 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEV-----TEPCGEC--ES-- 86 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCcccccccc-----CCCCccC--HH--
Confidence 45568777778888877765446678899999999999999998765311 1000000000 0011100 00
Q ss_pred HHHHHHHHHHHHhcccc--ccCC-CCCCHHHHHHHHHHH----hccCCeeEEEecCCch--hHHHHHhhhc---CCCcEE
Q 002559 236 RLARKISKFLVQIGFWK--KIKD-ENSDLEYLCCLLQEA----LYGKSILILLDDVWEQ--DIVERFAKLY---DNDCKY 303 (908)
Q Consensus 236 ~l~~~i~~~L~~lg~~~--~~~~-~~~~~~~l~~~l~~~----L~~kr~LLVLDDV~~~--~~~e~l~~~~---~~gsrI 303 (908)
.+.+ ......+ .... .....+++...+... ..+.+-++|+||++.. ...+.|...+ +..+.+
T Consensus 87 --C~~~----~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~ 160 (620)
T PRK14954 87 --CRDF----DAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIF 160 (620)
T ss_pred --HHHH----hccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEE
Confidence 0011 0000000 0000 111244443332222 2345668899999755 4466666554 234454
Q ss_pred E-EEccchhhhhhcc--ccee---cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhHhCCchh
Q 002559 304 L-VTTRNEAVYEITE--AEKV---ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGHHPL 363 (908)
Q Consensus 304 L-VTTR~~~va~~~~--~~~~---~L~~~ea~~Lf~~~~~~~~~~~~~~l~~i~~~Iv~~cgGLPL 363 (908)
| +|++...+..... ...+ +++.++....+.+.+...+.. -..+.++.|++.++|..-
T Consensus 161 IL~t~~~~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~---I~~eal~~La~~s~Gdlr 223 (620)
T PRK14954 161 IFATTELHKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQ---IDADALQLIARKAQGSMR 223 (620)
T ss_pred EEEeCChhhhhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHhCCCHH
Confidence 4 4554444433211 2222 678877766666665443321 223677889999998543
No 79
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.28 E-value=0.0093 Score=65.06 Aligned_cols=186 Identities=17% Similarity=0.107 Sum_probs=101.3
Q ss_pred cHHHHHHHHHhccCC--ceEEEEEecCCCChHHHHHHHHhCCCCccccceEEEeeeeeeccccccCCcchHHHHHHHHHH
Q 002559 165 SKSKFLRKLLEQEET--HQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACNGSKSDYQKRLARKIS 242 (908)
Q Consensus 165 ~~~~~l~~LL~~~~~--~~vV~I~GmgGiGKTtLA~~v~~~~~~~F~~~~f~~~v~~wv~~~~~~~s~~~~~~~l~~~i~ 242 (908)
.-.+.++.|+..... .+-+.|+|.+|+|||+++++++..+...++...-.+.| ++-.. ........+...|+
T Consensus 44 ~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PV--v~vq~----P~~p~~~~~Y~~IL 117 (302)
T PF05621_consen 44 EALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPV--VYVQM----PPEPDERRFYSAIL 117 (302)
T ss_pred HHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccE--EEEec----CCCCChHHHHHHHH
Confidence 556777888876544 56789999999999999999998776544433211111 11000 23344566666665
Q ss_pred HHHHHhccccccCCCCCCHHHHHHHHHHHhcc-CCeeEEEecCCch-----h----HHHHHhhhcCC---CcEEEEEccc
Q 002559 243 KFLVQIGFWKKIKDENSDLEYLCCLLQEALYG-KSILILLDDVWEQ-----D----IVERFAKLYDN---DCKYLVTTRN 309 (908)
Q Consensus 243 ~~L~~lg~~~~~~~~~~~~~~l~~~l~~~L~~-kr~LLVLDDV~~~-----~----~~e~l~~~~~~---gsrILVTTR~ 309 (908)
..+ |.+ .....+...+...+...++. +--+||+|.+.+. . .++.+ ..+++ =+-|.+-|++
T Consensus 118 ~~l---gaP---~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~L-K~L~NeL~ipiV~vGt~~ 190 (302)
T PF05621_consen 118 EAL---GAP---YRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNAL-KFLGNELQIPIVGVGTRE 190 (302)
T ss_pred HHh---Ccc---cCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHH-HHHhhccCCCeEEeccHH
Confidence 443 432 22233445555555556655 4468999999764 1 12222 23443 2356666665
Q ss_pred hhh--------hhhccccee-cCC-hhhHHHHHHHHhhhccc--ccCcchHHHHHHHHhHhCCchh
Q 002559 310 EAV--------YEITEAEKV-ELS-KDDIMEISKSILLYHSL--LAEEELPAAAESLLERCGHHPL 363 (908)
Q Consensus 310 ~~v--------a~~~~~~~~-~L~-~~ea~~Lf~~~~~~~~~--~~~~~l~~i~~~Iv~~cgGLPL 363 (908)
..- ++......+ ... .+|...|+......-.. ...-..++.+..|...++|+.=
T Consensus 191 A~~al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG 256 (302)
T PF05621_consen 191 AYRALRTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIG 256 (302)
T ss_pred HHHHhccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchH
Confidence 432 222222222 222 33445554332211111 1222346889999999999763
No 80
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.27 E-value=0.0042 Score=72.71 Aligned_cols=178 Identities=14% Similarity=0.182 Sum_probs=93.1
Q ss_pred cCCCcCccHHHHHHHHHhccCCceEEEEEecCCCChHHHHHHHHhCCCCc------cccceEEEeeeeeeccccccCCcc
Q 002559 158 EQGYPISSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPPER------FVGGAVELGFGQWCSRAACNGSKS 231 (908)
Q Consensus 158 ~~~~g~e~~~~~l~~LL~~~~~~~vV~I~GmgGiGKTtLA~~v~~~~~~~------F~~~~f~~~v~~wv~~~~~~~s~~ 231 (908)
...+|.+...+.+...+..+.-.+.+.++|+.|+||||+|+.+++..-.. -+|+. |.
T Consensus 17 ~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~-------------c~---- 79 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQ-------------CA---- 79 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcc-------------cH----
Confidence 45568777788888888765446778899999999999999998765311 01110 00
Q ss_pred hHHHHHHHHHHHHHHHhccccccCC-CCCCHHHHHHHHHHH-----hccCCeeEEEecCCch--hHHHHHhhhc---CCC
Q 002559 232 DYQKRLARKISKFLVQIGFWKKIKD-ENSDLEYLCCLLQEA-----LYGKSILILLDDVWEQ--DIVERFAKLY---DND 300 (908)
Q Consensus 232 ~~~~~l~~~i~~~L~~lg~~~~~~~-~~~~~~~l~~~l~~~-----L~~kr~LLVLDDV~~~--~~~e~l~~~~---~~g 300 (908)
.-.++... ...... .... .....++... +.+. ..+++-++|+|+++.. +..+.|...+ +..
T Consensus 80 -~C~~i~~~-----~~~d~~-~i~g~~~~gid~ir~-i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~ 151 (451)
T PRK06305 80 -SCKEISSG-----TSLDVL-EIDGASHRGIEDIRQ-INETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQH 151 (451)
T ss_pred -HHHHHhcC-----CCCceE-EeeccccCCHHHHHH-HHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCC
Confidence 00000000 000000 0000 0011222221 1111 1256678999998744 3455555444 345
Q ss_pred cEEEEEc-cchhhhh----hccccee-cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhHhCCchh
Q 002559 301 CKYLVTT-RNEAVYE----ITEAEKV-ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGHHPL 363 (908)
Q Consensus 301 srILVTT-R~~~va~----~~~~~~~-~L~~~ea~~Lf~~~~~~~~~~~~~~l~~i~~~Iv~~cgGLPL 363 (908)
+.+|++| +...+.. .+..... ++++++....+.+.+...+. .-.++.+..|++.++|.+-
T Consensus 152 ~~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~---~i~~~al~~L~~~s~gdlr 217 (451)
T PRK06305 152 VKFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGI---ETSREALLPIARAAQGSLR 217 (451)
T ss_pred ceEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHH
Confidence 5666555 3333332 2222222 67888877766665543322 1223677888889888653
No 81
>PRK08116 hypothetical protein; Validated
Probab=97.25 E-value=0.001 Score=72.44 Aligned_cols=27 Identities=33% Similarity=0.450 Sum_probs=23.4
Q ss_pred eEEEEEecCCCChHHHHHHHHhCCCCc
Q 002559 181 QVILIVGLSGIGKSCLARQVASDPPER 207 (908)
Q Consensus 181 ~vV~I~GmgGiGKTtLA~~v~~~~~~~ 207 (908)
..+.++|.+|+|||.||.++++....+
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~ 141 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEK 141 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 458899999999999999999987543
No 82
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.24 E-value=0.0055 Score=73.47 Aligned_cols=186 Identities=15% Similarity=0.220 Sum_probs=102.0
Q ss_pred CCCcCccHHHHHHHHHhccCCceEEEEEecCCCChHHHHHHHHhCCCCc-----cccceEEEeeeeeeccccccCCcchH
Q 002559 159 QGYPISSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPPER-----FVGGAVELGFGQWCSRAACNGSKSDY 233 (908)
Q Consensus 159 ~~~g~e~~~~~l~~LL~~~~~~~vV~I~GmgGiGKTtLA~~v~~~~~~~-----F~~~~f~~~v~~wv~~~~~~~s~~~~ 233 (908)
..+|.+...+.+...+..+.-...+.++|+.|+||||+|+.+++.+-.. .+|+. |. .
T Consensus 17 dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~-------------C~-----s 78 (624)
T PRK14959 17 EVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNT-------------CE-----Q 78 (624)
T ss_pred HhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcc-------------cH-----H
Confidence 4457777778888888765446788899999999999999999876421 11111 10 0
Q ss_pred HHHHHHHHHHHHHHhccccccCC-CCCCHHHHHHHHHHH-----hccCCeeEEEecCCch--hHHHHHhhhcC---CCcE
Q 002559 234 QKRLARKISKFLVQIGFWKKIKD-ENSDLEYLCCLLQEA-----LYGKSILILLDDVWEQ--DIVERFAKLYD---NDCK 302 (908)
Q Consensus 234 ~~~l~~~i~~~L~~lg~~~~~~~-~~~~~~~l~~~l~~~-----L~~kr~LLVLDDV~~~--~~~e~l~~~~~---~gsr 302 (908)
-+.+.... ..... .... ....+++... +.+. ..+++-++|+|++... +.++.|...+. ....
T Consensus 79 C~~i~~g~-----hpDv~-eId~a~~~~Id~iR~-L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~i 151 (624)
T PRK14959 79 CRKVTQGM-----HVDVV-EIDGASNRGIDDAKR-LKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVT 151 (624)
T ss_pred HHHHhcCC-----CCceE-EEecccccCHHHHHH-HHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEE
Confidence 00000000 00000 0000 0112222221 2222 2356679999999755 55666666552 3455
Q ss_pred EEEEccc-hhhhh----hccccee-cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhHhCCch-hhHhHhhhhh
Q 002559 303 YLVTTRN-EAVYE----ITEAEKV-ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGHHP-LTVAVMGKAL 372 (908)
Q Consensus 303 ILVTTR~-~~va~----~~~~~~~-~L~~~ea~~Lf~~~~~~~~~~~~~~l~~i~~~Iv~~cgGLP-LAI~~ig~~L 372 (908)
+|++|.+ ..+.. .+..... +++.++..+.+.+.+...+.. -..+.++.|++.++|.+ .|+..+...+
T Consensus 152 fILaTt~~~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi~---id~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 152 FVLATTEPHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVD---YDPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred EEEecCChhhhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 5555544 33332 2222223 788888877777766544321 22367788888998854 6666665444
No 83
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.23 E-value=0.0073 Score=71.51 Aligned_cols=183 Identities=17% Similarity=0.187 Sum_probs=99.4
Q ss_pred cCCCcCccHHHHHHHHHhccCCceEEEEEecCCCChHHHHHHHHhCCCC----c-cccceEEEeeeeeeccccccCCcch
Q 002559 158 EQGYPISSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPPE----R-FVGGAVELGFGQWCSRAACNGSKSD 232 (908)
Q Consensus 158 ~~~~g~e~~~~~l~~LL~~~~~~~vV~I~GmgGiGKTtLA~~v~~~~~~----~-F~~~~f~~~v~~wv~~~~~~~s~~~ 232 (908)
...+|.+.-.+.+...+..+.-.+...++|+.|+||||+|+.+++..-. . .+|+.. ..|.
T Consensus 14 deiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C----------~~C~----- 78 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTC----------IQCQ----- 78 (535)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCccc----------HHHH-----
Confidence 4556777777888888876544677899999999999999998876521 1 111110 0000
Q ss_pred HHHHHHHHHHHHHHHhccccccCCCCCCHHHHHHHHHHH----hccCCeeEEEecCCch--hHHHHHhhhc---CCCcEE
Q 002559 233 YQKRLARKISKFLVQIGFWKKIKDENSDLEYLCCLLQEA----LYGKSILILLDDVWEQ--DIVERFAKLY---DNDCKY 303 (908)
Q Consensus 233 ~~~~l~~~i~~~L~~lg~~~~~~~~~~~~~~l~~~l~~~----L~~kr~LLVLDDV~~~--~~~e~l~~~~---~~gsrI 303 (908)
.+.... ...............+++.+.+... ..+++-++|+|++... +..+.|+..+ ++.+++
T Consensus 79 ---~~~~~~-----h~dv~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~F 150 (535)
T PRK08451 79 ---SALENR-----HIDIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKF 150 (535)
T ss_pred ---HHhhcC-----CCeEEEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEE
Confidence 000000 0000000000011233333333221 1145568899999754 4566666444 556776
Q ss_pred EEEccch-hhh----hhccccee-cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhHhCCchhhHh
Q 002559 304 LVTTRNE-AVY----EITEAEKV-ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGHHPLTVA 366 (908)
Q Consensus 304 LVTTR~~-~va----~~~~~~~~-~L~~~ea~~Lf~~~~~~~~~~~~~~l~~i~~~Iv~~cgGLPLAI~ 366 (908)
|++|.+. .+. ..+..... +++.++....+.+.+...+.. -.++.+..|++.++|.+--+.
T Consensus 151 IL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~---i~~~Al~~Ia~~s~GdlR~al 216 (535)
T PRK08451 151 ILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVS---YEPEALEILARSGNGSLRDTL 216 (535)
T ss_pred EEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCcHHHHH
Confidence 6666553 222 22222222 788888777777666544322 224677889999998874333
No 84
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.23 E-value=0.0044 Score=72.49 Aligned_cols=160 Identities=13% Similarity=0.172 Sum_probs=88.6
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCCCCcc-ccceEEEeeeeeeccccccCCcchHHHHHHHHHHHHHHHhccccccCCCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDPPERF-VGGAVELGFGQWCSRAACNGSKSDYQKRLARKISKFLVQIGFWKKIKDEN 258 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~~~~F-~~~~f~~~v~~wv~~~~~~~s~~~~~~~l~~~i~~~L~~lg~~~~~~~~~ 258 (908)
..-+.|+|..|+|||+|++++++...... ...++++ +.......+...+ .. .
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv-------------~~~~f~~~~~~~l----~~-------~--- 193 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYM-------------SGDEFARKAVDIL----QK-------T--- 193 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEE-------------EHHHHHHHHHHHH----HH-------h---
Confidence 35688999999999999999998654221 1223332 2222333333322 11 0
Q ss_pred CCHHHHHHHHHHHhccCCeeEEEecCCch---h-HHHHHhhhc----CCCcEEEEEccchh-hh--------hhcccce-
Q 002559 259 SDLEYLCCLLQEALYGKSILILLDDVWEQ---D-IVERFAKLY----DNDCKYLVTTRNEA-VY--------EITEAEK- 320 (908)
Q Consensus 259 ~~~~~l~~~l~~~L~~kr~LLVLDDV~~~---~-~~e~l~~~~----~~gsrILVTTR~~~-va--------~~~~~~~- 320 (908)
......+++.+. ..-+||+||+... + ..+.+...+ ..|..||+|+.... .. ..+....
T Consensus 194 ---~~~~~~~~~~~~-~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~ 269 (450)
T PRK14087 194 ---HKEIEQFKNEIC-QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLS 269 (450)
T ss_pred ---hhHHHHHHHHhc-cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCce
Confidence 011223333333 3458899999643 1 223333222 45667888876431 11 1111111
Q ss_pred --e-cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhHhCCchhhHhHhhhh
Q 002559 321 --V-ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGHHPLTVAVMGKA 371 (908)
Q Consensus 321 --~-~L~~~ea~~Lf~~~~~~~~~~~~~~l~~i~~~Iv~~cgGLPLAI~~ig~~ 371 (908)
+ +++.++-.+++.+.+...+.. ..-.+++..-|++.++|.|-.+..+...
T Consensus 270 ~~L~~pd~e~r~~iL~~~~~~~gl~-~~l~~evl~~Ia~~~~gd~R~L~gaL~~ 322 (450)
T PRK14087 270 IAIQKLDNKTATAIIKKEIKNQNIK-QEVTEEAINFISNYYSDDVRKIKGSVSR 322 (450)
T ss_pred eccCCcCHHHHHHHHHHHHHhcCCC-CCCCHHHHHHHHHccCCCHHHHHHHHHH
Confidence 1 678888888888777544321 1223477888999999988766655543
No 85
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.22 E-value=0.0078 Score=67.23 Aligned_cols=77 Identities=18% Similarity=0.219 Sum_probs=52.8
Q ss_pred HHHHHHHHHhcc--CCceEEEEEecCCCChHHHHHHHHhCCCCccccceEEEeeeeeeccccccCCcchHHHHHHHHHHH
Q 002559 166 KSKFLRKLLEQE--ETHQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACNGSKSDYQKRLARKISK 243 (908)
Q Consensus 166 ~~~~l~~LL~~~--~~~~vV~I~GmgGiGKTtLA~~v~~~~~~~F~~~~f~~~v~~wv~~~~~~~s~~~~~~~l~~~i~~ 243 (908)
-.+.+..++... ..+.+|+|.|.-|+|||++.+.+.+.+........+.+.+..|-.. +.+.....+...|..
T Consensus 4 ~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~~~~~~~~i~fn~w~~~-----~~~~~~~~~~~~l~~ 78 (325)
T PF07693_consen 4 YAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELKEDNKEKYIFIYFNAWEYD-----GEDDLWASFLEELFD 78 (325)
T ss_pred HHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccceeeEEEccccCC-----CcchHHHHHHHHHHH
Confidence 345566666654 4588999999999999999999998887664444556666667543 334445556666655
Q ss_pred HHHH
Q 002559 244 FLVQ 247 (908)
Q Consensus 244 ~L~~ 247 (908)
.+..
T Consensus 79 ~l~~ 82 (325)
T PF07693_consen 79 QLEK 82 (325)
T ss_pred HHHH
Confidence 5544
No 86
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.21 E-value=0.0038 Score=78.44 Aligned_cols=173 Identities=12% Similarity=0.095 Sum_probs=91.8
Q ss_pred cCCCcCccHHHHHHHHHhccCCceEEEEEecCCCChHHHHHHHHhCCCCcc-----c-cceEEEeeeeeeccccccCCcc
Q 002559 158 EQGYPISSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPPERF-----V-GGAVELGFGQWCSRAACNGSKS 231 (908)
Q Consensus 158 ~~~~g~e~~~~~l~~LL~~~~~~~vV~I~GmgGiGKTtLA~~v~~~~~~~F-----~-~~~f~~~v~~wv~~~~~~~s~~ 231 (908)
.+.+|++...+.+...|..... .-+.++|.+|+||||||+.+++++.... . ...+.++++.-.
T Consensus 187 d~~iGr~~ei~~~i~~l~r~~~-~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~---------- 255 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRRRQ-NNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQ---------- 255 (852)
T ss_pred CcccCCHHHHHHHHHHHhcCCc-CceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhh----------
Confidence 4667888877777776665432 3455999999999999999998764221 1 112222221100
Q ss_pred hHHHHHHHHHHHHHHHhccccccCCCCCCHHH-HHHHHHHHh-ccCCeeEEEecCCchh---------H-HHHHhhhcCC
Q 002559 232 DYQKRLARKISKFLVQIGFWKKIKDENSDLEY-LCCLLQEAL-YGKSILILLDDVWEQD---------I-VERFAKLYDN 299 (908)
Q Consensus 232 ~~~~~l~~~i~~~L~~lg~~~~~~~~~~~~~~-l~~~l~~~L-~~kr~LLVLDDV~~~~---------~-~e~l~~~~~~ 299 (908)
.......+.+. +...+.+.- .+++.+|++|++.... + -+.+.+.+..
T Consensus 256 ---------------------ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~ 314 (852)
T TIGR03345 256 ---------------------AGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALAR 314 (852)
T ss_pred ---------------------cccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhC
Confidence 00011112222 222222222 2468999999986431 1 1235566666
Q ss_pred Cc-EEEEEccchh----------hhhhccccee-cCChhhHHHHHHHHhhhccc-ccCcchHHHHHHHHhHhCCch
Q 002559 300 DC-KYLVTTRNEA----------VYEITEAEKV-ELSKDDIMEISKSILLYHSL-LAEEELPAAAESLLERCGHHP 362 (908)
Q Consensus 300 gs-rILVTTR~~~----------va~~~~~~~~-~L~~~ea~~Lf~~~~~~~~~-~~~~~l~~i~~~Iv~~cgGLP 362 (908)
|. ++|-||.... +...+....+ +++.++..++++........ ....-..+....+++.+.+.+
T Consensus 315 G~l~~IgaTT~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi 390 (852)
T TIGR03345 315 GELRTIAATTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYI 390 (852)
T ss_pred CCeEEEEecCHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHccccc
Confidence 64 5555555432 2223332223 78999999987544432211 111222356677777776543
No 87
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.19 E-value=0.0063 Score=74.03 Aligned_cols=185 Identities=12% Similarity=0.113 Sum_probs=96.7
Q ss_pred cCCCcCccHHHHHHHHHhccCCceEEEEEecCCCChHHHHHHHHhCCCC-ccccceEEEeeeeeeccccccCCcchHHHH
Q 002559 158 EQGYPISSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPPE-RFVGGAVELGFGQWCSRAACNGSKSDYQKR 236 (908)
Q Consensus 158 ~~~~g~e~~~~~l~~LL~~~~~~~vV~I~GmgGiGKTtLA~~v~~~~~~-~F~~~~f~~~v~~wv~~~~~~~s~~~~~~~ 236 (908)
...+|.+.-.+.+...+..+.-.+.+.++|+.|+||||+|+.+++.+-. +.... +-....|...
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~--------~~pC~~C~~~------- 82 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDL--------LEPCQECIEN------- 82 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCC--------CCchhHHHHh-------
Confidence 3455777777888888876655677889999999999999999876431 10000 0000011100
Q ss_pred HHHHHHHHHHHhccccccCCCCCCHHHH---HHHHHHH-hccCCeeEEEecCCch--hHHHHHhhhc---CCCcE-EEEE
Q 002559 237 LARKISKFLVQIGFWKKIKDENSDLEYL---CCLLQEA-LYGKSILILLDDVWEQ--DIVERFAKLY---DNDCK-YLVT 306 (908)
Q Consensus 237 l~~~i~~~L~~lg~~~~~~~~~~~~~~l---~~~l~~~-L~~kr~LLVLDDV~~~--~~~e~l~~~~---~~gsr-ILVT 306 (908)
. . ................++. .+.+... ..+++-++|+|++... ..++.|...+ +..+. |++|
T Consensus 83 ----~-~--~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaT 155 (725)
T PRK07133 83 ----V-N--NSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILAT 155 (725)
T ss_pred ----h-c--CCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEc
Confidence 0 0 0000000000000122222 2222111 2256678999999744 5566666544 33444 4455
Q ss_pred ccchhhhh----hccccee-cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhHhCCchh-hHhH
Q 002559 307 TRNEAVYE----ITEAEKV-ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGHHPL-TVAV 367 (908)
Q Consensus 307 TR~~~va~----~~~~~~~-~L~~~ea~~Lf~~~~~~~~~~~~~~l~~i~~~Iv~~cgGLPL-AI~~ 367 (908)
|+...+.. .+..... +++.++....+...+...+.. ...+.+..|++.++|.+- |+..
T Consensus 156 te~~KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~---id~eAl~~LA~lS~GslR~Alsl 219 (725)
T PRK07133 156 TEVHKIPLTILSRVQRFNFRRISEDEIVSRLEFILEKENIS---YEKNALKLIAKLSSGSLRDALSI 219 (725)
T ss_pred CChhhhhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 55444432 2222222 678888777666655443321 223567889999988664 4443
No 88
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.15 E-value=0.0087 Score=70.60 Aligned_cols=177 Identities=16% Similarity=0.179 Sum_probs=92.9
Q ss_pred CCCcCccHHHHHHHHHhccCCceEEEEEecCCCChHHHHHHHHhCCCC----c-cccceEEEeeeeeeccccccCCcchH
Q 002559 159 QGYPISSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPPE----R-FVGGAVELGFGQWCSRAACNGSKSDY 233 (908)
Q Consensus 159 ~~~g~e~~~~~l~~LL~~~~~~~vV~I~GmgGiGKTtLA~~v~~~~~~----~-F~~~~f~~~v~~wv~~~~~~~s~~~~ 233 (908)
..+|.+.-.+.+...+..+.-.+.+.++|+.|+||||+|+.++..+.. . .+|+. |. +
T Consensus 17 diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~-------------c~-----n 78 (486)
T PRK14953 17 EVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGK-------------CE-----N 78 (486)
T ss_pred HccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCc-------------cH-----H
Confidence 445777777788888876544667789999999999999999876531 0 12211 00 0
Q ss_pred HHHHHH----HHHHHHHHhccccccCCCCCCHHHHHHHHHHHh-----ccCCeeEEEecCCch--hHHHHHhhhc---CC
Q 002559 234 QKRLAR----KISKFLVQIGFWKKIKDENSDLEYLCCLLQEAL-----YGKSILILLDDVWEQ--DIVERFAKLY---DN 299 (908)
Q Consensus 234 ~~~l~~----~i~~~L~~lg~~~~~~~~~~~~~~l~~~l~~~L-----~~kr~LLVLDDV~~~--~~~e~l~~~~---~~ 299 (908)
-..+.. ++.. + .. ......++.. .+.+.. .+++-++|+|+++.. ...+.+...+ ++
T Consensus 79 c~~i~~g~~~d~~e----i----da-as~~gvd~ir-~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~ 148 (486)
T PRK14953 79 CVEIDKGSFPDLIE----I----DA-ASNRGIDDIR-ALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPP 148 (486)
T ss_pred HHHHhcCCCCcEEE----E----eC-ccCCCHHHHH-HHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCC
Confidence 000000 0000 0 00 0001122211 122221 345679999999754 4456665444 33
Q ss_pred CcEEEE-Eccchhhhh----hccccee-cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhHhCCchhhHh
Q 002559 300 DCKYLV-TTRNEAVYE----ITEAEKV-ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGHHPLTVA 366 (908)
Q Consensus 300 gsrILV-TTR~~~va~----~~~~~~~-~L~~~ea~~Lf~~~~~~~~~~~~~~l~~i~~~Iv~~cgGLPLAI~ 366 (908)
.+.+|+ ||+...+.. .+..... +++.++....+.+.+...+.. -.++....|++.++|.+-.+.
T Consensus 149 ~~v~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~---id~~al~~La~~s~G~lr~al 218 (486)
T PRK14953 149 RTIFILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIE---YEEKALDLLAQASEGGMRDAA 218 (486)
T ss_pred CeEEEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHH
Confidence 444444 544333332 2221122 677777766666665543322 223667778888888665443
No 89
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.15 E-value=0.004 Score=71.57 Aligned_cols=50 Identities=26% Similarity=0.335 Sum_probs=37.3
Q ss_pred cCCCcCccHHHHHHHHHhc------------cCCceEEEEEecCCCChHHHHHHHHhCCCCc
Q 002559 158 EQGYPISSKSKFLRKLLEQ------------EETHQVILIVGLSGIGKSCLARQVASDPPER 207 (908)
Q Consensus 158 ~~~~g~e~~~~~l~~LL~~------------~~~~~vV~I~GmgGiGKTtLA~~v~~~~~~~ 207 (908)
....|+++..+.+...+.. -..++-|.++|++|+|||++|+++++.....
T Consensus 131 ~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~ 192 (389)
T PRK03992 131 EDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNAT 192 (389)
T ss_pred HHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCC
Confidence 3445888888777776532 1235678999999999999999999876543
No 90
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.14 E-value=0.0091 Score=70.71 Aligned_cols=53 Identities=19% Similarity=0.421 Sum_probs=43.7
Q ss_pred ccCCCcCccHHHHHHHHHhc-----cCCceEEEEEecCCCChHHHHHHHHhCCCCccc
Q 002559 157 AEQGYPISSKSKFLRKLLEQ-----EETHQVILIVGLSGIGKSCLARQVASDPPERFV 209 (908)
Q Consensus 157 ~~~~~g~e~~~~~l~~LL~~-----~~~~~vV~I~GmgGiGKTtLA~~v~~~~~~~F~ 209 (908)
.+..||+++-.+.|-+++.- ...-++++.+|++|+|||.+|+.++..+.++|.
T Consensus 410 deDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFf 467 (906)
T KOG2004|consen 410 DEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFF 467 (906)
T ss_pred cccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceE
Confidence 47788999888877777642 334789999999999999999999999887774
No 91
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.13 E-value=0.0029 Score=68.14 Aligned_cols=168 Identities=17% Similarity=0.139 Sum_probs=95.4
Q ss_pred CcCccHHHHHHHHHhccCCceEEEEEecCCCChHHHHHHHHhCCC--CccccceEEEeeeeeeccccccCCcchHHHHHH
Q 002559 161 YPISSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPP--ERFVGGAVELGFGQWCSRAACNGSKSDYQKRLA 238 (908)
Q Consensus 161 ~g~e~~~~~l~~LL~~~~~~~vV~I~GmgGiGKTtLA~~v~~~~~--~~F~~~~f~~~v~~wv~~~~~~~s~~~~~~~l~ 238 (908)
.|.+..+..+..-+.. ...+....+|++|.|||+-|+.++..+- +-|+|++.-.+....- +.. -+-
T Consensus 39 ~gQe~vV~~L~~a~~~-~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSder-------Gis----vvr 106 (346)
T KOG0989|consen 39 AGQEHVVQVLKNALLR-RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDER-------GIS----VVR 106 (346)
T ss_pred cchHHHHHHHHHHHhh-cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccc-------ccc----chh
Confidence 3555666666665555 4678889999999999999999988764 3477777544332110 110 000
Q ss_pred HHHHHHHHHhccccccCCCCCCHHHHHHHHHHHhc--cCC-eeEEEecCCch--hHHHHHhhhc---CCCcE-EEEEccc
Q 002559 239 RKISKFLVQIGFWKKIKDENSDLEYLCCLLQEALY--GKS-ILILLDDVWEQ--DIVERFAKLY---DNDCK-YLVTTRN 309 (908)
Q Consensus 239 ~~i~~~L~~lg~~~~~~~~~~~~~~l~~~l~~~L~--~kr-~LLVLDDV~~~--~~~e~l~~~~---~~gsr-ILVTTR~ 309 (908)
.++ .+...+......... -++ -.+|||+++.. +.|..+.... +..++ |+||+--
T Consensus 107 ~Ki-----------------k~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnyl 169 (346)
T KOG0989|consen 107 EKI-----------------KNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYL 169 (346)
T ss_pred hhh-----------------cCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCCh
Confidence 001 111111111110000 123 46789999865 6788887654 34445 5555543
Q ss_pred hhhh----hhccccee-cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhHhCC
Q 002559 310 EAVY----EITEAEKV-ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGH 360 (908)
Q Consensus 310 ~~va----~~~~~~~~-~L~~~ea~~Lf~~~~~~~~~~~~~~l~~i~~~Iv~~cgG 360 (908)
..+. ..+.-... +|.+++...-++.++...+... ..+..+.|++.++|
T Consensus 170 srii~pi~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~---d~~al~~I~~~S~G 222 (346)
T KOG0989|consen 170 SRIIRPLVSRCQKFRFKKLKDEDIVDRLEKIASKEGVDI---DDDALKLIAKISDG 222 (346)
T ss_pred hhCChHHHhhHHHhcCCCcchHHHHHHHHHHHHHhCCCC---CHHHHHHHHHHcCC
Confidence 3322 23333333 7888888777777776554433 33667888888887
No 92
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.13 E-value=0.00046 Score=74.14 Aligned_cols=30 Identities=27% Similarity=0.201 Sum_probs=25.9
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCCCC-ccc
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDPPE-RFV 209 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~~~-~F~ 209 (908)
...++|+|++|+|||||++.+++.... +|+
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fd 46 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITKNHPE 46 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccccccCC
Confidence 467899999999999999999998864 454
No 93
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.10 E-value=0.0057 Score=74.13 Aligned_cols=180 Identities=14% Similarity=0.180 Sum_probs=96.7
Q ss_pred cCCCcCccHHHHHHHHHhccCCceEEEEEecCCCChHHHHHHHHhCCCCc------cccceEEEeeeeeeccccccCCcc
Q 002559 158 EQGYPISSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPPER------FVGGAVELGFGQWCSRAACNGSKS 231 (908)
Q Consensus 158 ~~~~g~e~~~~~l~~LL~~~~~~~vV~I~GmgGiGKTtLA~~v~~~~~~~------F~~~~f~~~v~~wv~~~~~~~s~~ 231 (908)
...+|.+.-.+.+...+..+.-.+.+.++|+.|+||||+|+.++..+.-. ..|+. |.
T Consensus 17 ~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~-------------C~---- 79 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNE-------------CE---- 79 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCc-------------ch----
Confidence 45567777777777777765446778999999999999999998765311 11111 10
Q ss_pred hHHHHHHHHHHHHHHHhccccccCCCCCCHHHHHHHHHHH----hccCCeeEEEecCCch--hHHHHHhhhc---CCCcE
Q 002559 232 DYQKRLARKISKFLVQIGFWKKIKDENSDLEYLCCLLQEA----LYGKSILILLDDVWEQ--DIVERFAKLY---DNDCK 302 (908)
Q Consensus 232 ~~~~~l~~~i~~~L~~lg~~~~~~~~~~~~~~l~~~l~~~----L~~kr~LLVLDDV~~~--~~~e~l~~~~---~~gsr 302 (908)
.-..+... .......-........+++...+.+. ..+++-++|+|++... ..++.|...+ +..+.
T Consensus 80 -sC~~~~~~-----~~~n~~~ld~~~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~ti 153 (614)
T PRK14971 80 -SCVAFNEQ-----RSYNIHELDAASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAI 153 (614)
T ss_pred -HHHHHhcC-----CCCceEEecccccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeE
Confidence 00000000 00000000000011233333333211 2245568899999755 4566666544 34566
Q ss_pred EEE-Eccchhhhhh----ccccee-cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhHhCCchh
Q 002559 303 YLV-TTRNEAVYEI----TEAEKV-ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGHHPL 363 (908)
Q Consensus 303 ILV-TTR~~~va~~----~~~~~~-~L~~~ea~~Lf~~~~~~~~~~~~~~l~~i~~~Iv~~cgGLPL 363 (908)
+|+ ||+...+... +..... +++.++....+.+.+...+.. -.++.+..|++.++|..-
T Consensus 154 fIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~---i~~~al~~La~~s~gdlr 217 (614)
T PRK14971 154 FILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGIT---AEPEALNVIAQKADGGMR 217 (614)
T ss_pred EEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHH
Confidence 554 5554444432 222222 688888777777766554332 223567888999988654
No 94
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.10 E-value=0.0096 Score=68.46 Aligned_cols=49 Identities=24% Similarity=0.377 Sum_probs=35.4
Q ss_pred CCcCccHHHHHHHHHhc---------c---CCceEEEEEecCCCChHHHHHHHHhCCCCcc
Q 002559 160 GYPISSKSKFLRKLLEQ---------E---ETHQVILIVGLSGIGKSCLARQVASDPPERF 208 (908)
Q Consensus 160 ~~g~e~~~~~l~~LL~~---------~---~~~~vV~I~GmgGiGKTtLA~~v~~~~~~~F 208 (908)
..|.+...+.++..+.. . ..++-|.++|++|+|||+||+.+++.....|
T Consensus 147 igGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~f 207 (398)
T PTZ00454 147 IGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATF 207 (398)
T ss_pred cCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCE
Confidence 34777666666665431 0 2367799999999999999999998765443
No 95
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.06 E-value=0.0039 Score=69.03 Aligned_cols=51 Identities=25% Similarity=0.256 Sum_probs=42.0
Q ss_pred cCCCcCccHHHHHHHHHhccCC--ceEEEEEecCCCChHHHHHHHHhCCCCcc
Q 002559 158 EQGYPISSKSKFLRKLLEQEET--HQVILIVGLSGIGKSCLARQVASDPPERF 208 (908)
Q Consensus 158 ~~~~g~e~~~~~l~~LL~~~~~--~~vV~I~GmgGiGKTtLA~~v~~~~~~~F 208 (908)
+....|+...+.+..++.+.+. +..|-|+|-.|.|||.+.+.+.+....++
T Consensus 6 ~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~ 58 (438)
T KOG2543|consen 6 PNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNLEN 58 (438)
T ss_pred cCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCCcc
Confidence 4455788999999999987655 56679999999999999999999885443
No 96
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.03 E-value=0.0054 Score=77.22 Aligned_cols=47 Identities=15% Similarity=0.254 Sum_probs=37.7
Q ss_pred cCCCcCccHHHHHHHHHhccCCceEEEEEecCCCChHHHHHHHHhCCC
Q 002559 158 EQGYPISSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 158 ~~~~g~e~~~~~l~~LL~~~~~~~vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
.+.+|+++..+.+..+|..... .-+.++|++|+|||++|..+++...
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~~-~n~lL~G~pGvGKTal~~~la~~i~ 225 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRTK-NNPILIGEPGVGKTAIAEGLAQRIV 225 (821)
T ss_pred CCCCCcHHHHHHHHHHHccccc-CCeEEECCCCCCHHHHHHHHHHHHH
Confidence 4567899888888888876433 3446999999999999999998754
No 97
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.00 E-value=0.023 Score=63.72 Aligned_cols=88 Identities=15% Similarity=0.205 Sum_probs=52.5
Q ss_pred cCCeeEEEecCCch--hHHHHHhhhc---CCCcEEEEEccchh-hhhh----ccccee-cCChhhHHHHHHHHhhhcccc
Q 002559 274 GKSILILLDDVWEQ--DIVERFAKLY---DNDCKYLVTTRNEA-VYEI----TEAEKV-ELSKDDIMEISKSILLYHSLL 342 (908)
Q Consensus 274 ~kr~LLVLDDV~~~--~~~e~l~~~~---~~gsrILVTTR~~~-va~~----~~~~~~-~L~~~ea~~Lf~~~~~~~~~~ 342 (908)
+++-++|+|+++.. +..+.+.+.+ +.++.+|+||.+.. +... +..... +++.+++.+.+.+...
T Consensus 105 ~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~~----- 179 (328)
T PRK05707 105 GGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQALP----- 179 (328)
T ss_pred CCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhcc-----
Confidence 34455678999854 5566666544 45677777776653 3322 222222 6788887776654321
Q ss_pred cCcchHHHHHHHHhHhCCchhhHhHh
Q 002559 343 AEEELPAAAESLLERCGHHPLTVAVM 368 (908)
Q Consensus 343 ~~~~l~~i~~~Iv~~cgGLPLAI~~i 368 (908)
....+.+..++..++|.|+....+
T Consensus 180 --~~~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 180 --ESDERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred --cCChHHHHHHHHHcCCCHHHHHHH
Confidence 111245567889999999755443
No 98
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.95 E-value=0.019 Score=69.78 Aligned_cols=189 Identities=14% Similarity=0.135 Sum_probs=96.3
Q ss_pred CCCcCccHHHHHHHHHhccCCceEEEEEecCCCChHHHHHHHHhCCCCccccceEEEeeeeeeccccccCCcchHHHHHH
Q 002559 159 QGYPISSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACNGSKSDYQKRLA 238 (908)
Q Consensus 159 ~~~g~e~~~~~l~~LL~~~~~~~vV~I~GmgGiGKTtLA~~v~~~~~~~F~~~~f~~~v~~wv~~~~~~~s~~~~~~~l~ 238 (908)
..+|.+...+.+...+....-.+.+.++|..|+||||+|+.+++.+-.....+. ....|.. - ...
T Consensus 17 ~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~---------~~~~Cg~--C----~~C 81 (620)
T PRK14948 17 ELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKP---------TPEPCGK--C----ELC 81 (620)
T ss_pred hccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCC---------CCCCCcc--c----HHH
Confidence 445777777788888876544567889999999999999999987642110000 0001110 0 011
Q ss_pred HHHHHHHHHhccccccCCCCCCHHHHHHHHHHH----hccCCeeEEEecCCch--hHHHHHhhhc---CCCcEEEEEccc
Q 002559 239 RKISKFLVQIGFWKKIKDENSDLEYLCCLLQEA----LYGKSILILLDDVWEQ--DIVERFAKLY---DNDCKYLVTTRN 309 (908)
Q Consensus 239 ~~i~~~L~~lg~~~~~~~~~~~~~~l~~~l~~~----L~~kr~LLVLDDV~~~--~~~e~l~~~~---~~gsrILVTTR~ 309 (908)
+.+.... ......-........+.+.+.+... ..+++-++|+|+++.. +.++.|...+ +..+.+|++|.+
T Consensus 82 ~~i~~g~-h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~ 160 (620)
T PRK14948 82 RAIAAGN-ALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTD 160 (620)
T ss_pred HHHhcCC-CccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCC
Confidence 1111000 0000000000112333333333221 1245568899999854 5577776555 234454444433
Q ss_pred -hhhhh----hccccee-cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhHhCCchhhHh
Q 002559 310 -EAVYE----ITEAEKV-ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGHHPLTVA 366 (908)
Q Consensus 310 -~~va~----~~~~~~~-~L~~~ea~~Lf~~~~~~~~~~~~~~l~~i~~~Iv~~cgGLPLAI~ 366 (908)
..+.. .+..... +++.++....+.+++...+... .++.+..|++.++|.+..+.
T Consensus 161 ~~~llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~i---s~~al~~La~~s~G~lr~A~ 220 (620)
T PRK14948 161 PQRVLPTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIEI---EPEALTLVAQRSQGGLRDAE 220 (620)
T ss_pred hhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHhCCCC---CHHHHHHHHHHcCCCHHHHH
Confidence 33332 2222222 5777776666666655432221 23567788888888765443
No 99
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.94 E-value=0.0012 Score=62.93 Aligned_cols=24 Identities=42% Similarity=0.487 Sum_probs=21.7
Q ss_pred EEEEecCCCChHHHHHHHHhCCCC
Q 002559 183 ILIVGLSGIGKSCLARQVASDPPE 206 (908)
Q Consensus 183 V~I~GmgGiGKTtLA~~v~~~~~~ 206 (908)
|.|+|++|+|||++|+.+++....
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~ 24 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGF 24 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTS
T ss_pred CEEECcCCCCeeHHHHHHHhhccc
Confidence 579999999999999999998753
No 100
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=96.94 E-value=0.00067 Score=76.33 Aligned_cols=31 Identities=26% Similarity=0.164 Sum_probs=25.7
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCCCC-cccc
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDPPE-RFVG 210 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~~~-~F~~ 210 (908)
-.-.+|+|++|+||||||+.+|+.... +|+.
T Consensus 169 GQR~lIvgppGvGKTTLaK~Ian~I~~nhFDv 200 (416)
T PRK09376 169 GQRGLIVAPPKAGKTVLLQNIANSITTNHPEV 200 (416)
T ss_pred CceEEEeCCCCCChhHHHHHHHHHHHhhcCCe
Confidence 356789999999999999999998874 4653
No 101
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=96.93 E-value=0.0078 Score=71.91 Aligned_cols=26 Identities=27% Similarity=0.457 Sum_probs=22.7
Q ss_pred eEEEEEecCCCChHHHHHHHHhCCCC
Q 002559 181 QVILIVGLSGIGKSCLARQVASDPPE 206 (908)
Q Consensus 181 ~vV~I~GmgGiGKTtLA~~v~~~~~~ 206 (908)
..+.|+|..|+|||.|++++++....
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~ 340 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARR 340 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 45899999999999999999987653
No 102
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.92 E-value=0.024 Score=68.48 Aligned_cols=180 Identities=16% Similarity=0.187 Sum_probs=95.2
Q ss_pred cCCCcCccHHHHHHHHHhccCCceEEEEEecCCCChHHHHHHHHhCCCC-c-c---ccceEEEeeeeeeccccccCCcch
Q 002559 158 EQGYPISSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPPE-R-F---VGGAVELGFGQWCSRAACNGSKSD 232 (908)
Q Consensus 158 ~~~~g~e~~~~~l~~LL~~~~~~~vV~I~GmgGiGKTtLA~~v~~~~~~-~-F---~~~~f~~~v~~wv~~~~~~~s~~~ 232 (908)
...+|.+.-.+.+...+..+.-.+.+.++|+.|+||||+|+.+++.+.. + . +|+. |.
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~-------------c~----- 77 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNV-------------CP----- 77 (576)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCc-------------cH-----
Confidence 4556877777888888876544677889999999999999999876531 1 1 1111 10
Q ss_pred HHHHHHHHHHHHHHHhccccc---cC-CCCCCHHHHHHHHHHHh-----ccCCeeEEEecCCch--hHHHHHhhhc---C
Q 002559 233 YQKRLARKISKFLVQIGFWKK---IK-DENSDLEYLCCLLQEAL-----YGKSILILLDDVWEQ--DIVERFAKLY---D 298 (908)
Q Consensus 233 ~~~~l~~~i~~~L~~lg~~~~---~~-~~~~~~~~l~~~l~~~L-----~~kr~LLVLDDV~~~--~~~e~l~~~~---~ 298 (908)
....+.. |...+ .. .....+++... +.+.+ .+++-++|+|++... ...+.|...+ +
T Consensus 78 ----~c~~i~~-----g~~~d~~eid~~s~~~v~~ir~-l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp 147 (576)
T PRK14965 78 ----PCVEITE-----GRSVDVFEIDGASNTGVDDIRE-LRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPP 147 (576)
T ss_pred ----HHHHHhc-----CCCCCeeeeeccCccCHHHHHH-HHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCC
Confidence 0000000 00000 00 00112222222 22221 245568899999754 4566666544 3
Q ss_pred CCcEEE-EEccchhhhhh----ccccee-cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhHhCCch-hhHhHh
Q 002559 299 NDCKYL-VTTRNEAVYEI----TEAEKV-ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGHHP-LTVAVM 368 (908)
Q Consensus 299 ~gsrIL-VTTR~~~va~~----~~~~~~-~L~~~ea~~Lf~~~~~~~~~~~~~~l~~i~~~Iv~~cgGLP-LAI~~i 368 (908)
+.+.+| +||....+... +..... +++.++....+..++...+.. -..+....|++.++|.. .|+..+
T Consensus 148 ~~~~fIl~t~~~~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~---i~~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 148 PHVKFIFATTEPHKVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEGIS---ISDAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred CCeEEEEEeCChhhhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCC---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 455555 45544444432 211122 577777666666655443322 12366677888888754 344433
No 103
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=96.90 E-value=0.0071 Score=70.14 Aligned_cols=48 Identities=21% Similarity=0.373 Sum_probs=35.5
Q ss_pred CcCccHHHHHHHHHhc------------cCCceEEEEEecCCCChHHHHHHHHhCCCCcc
Q 002559 161 YPISSKSKFLRKLLEQ------------EETHQVILIVGLSGIGKSCLARQVASDPPERF 208 (908)
Q Consensus 161 ~g~e~~~~~l~~LL~~------------~~~~~vV~I~GmgGiGKTtLA~~v~~~~~~~F 208 (908)
.|.++..+.+...+.. -..++-|.++|++|+|||++|+.+++.....|
T Consensus 186 gGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~f 245 (438)
T PTZ00361 186 GGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATF 245 (438)
T ss_pred cCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCE
Confidence 3677777777766531 11356788999999999999999999765443
No 104
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.88 E-value=0.0094 Score=75.34 Aligned_cols=48 Identities=13% Similarity=0.224 Sum_probs=37.6
Q ss_pred cCCCcCccHHHHHHHHHhccCCceEEEEEecCCCChHHHHHHHHhCCCC
Q 002559 158 EQGYPISSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPPE 206 (908)
Q Consensus 158 ~~~~g~e~~~~~l~~LL~~~~~~~vV~I~GmgGiGKTtLA~~v~~~~~~ 206 (908)
.+.+|++...+.+...|..... .-+.++|.+|+|||+||..++++...
T Consensus 173 ~~~igr~~ei~~~~~~l~r~~~-~n~lL~G~pGvGKT~l~~~la~~i~~ 220 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRRTK-NNPVLIGEPGVGKTAIVEGLAQRIVN 220 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcCCC-CceEEEcCCCCCHHHHHHHHHHHHhc
Confidence 4567898888888887766432 34458999999999999999987643
No 105
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=96.86 E-value=0.021 Score=68.57 Aligned_cols=180 Identities=14% Similarity=0.132 Sum_probs=96.9
Q ss_pred cCCCcCccHHHHHHHHHhccCCceEEEEEecCCCChHHHHHHHHhCCCC-----ccccceEEEeeeeeeccccccCCcch
Q 002559 158 EQGYPISSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPPE-----RFVGGAVELGFGQWCSRAACNGSKSD 232 (908)
Q Consensus 158 ~~~~g~e~~~~~l~~LL~~~~~~~vV~I~GmgGiGKTtLA~~v~~~~~~-----~F~~~~f~~~v~~wv~~~~~~~s~~~ 232 (908)
...+|.+.-.+.+...+..+.-.+.+.++|+.|+||||+|+.+++.+-. .++|+. |..
T Consensus 16 ~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~-------------C~~---- 78 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGE-------------CSS---- 78 (563)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCcc-------------chH----
Confidence 3556877777788888876544677899999999999999999987531 122221 110
Q ss_pred HHHHHHHHHHHHHHHhccccccCCC-CCCHHHHHHHHHH----HhccCCeeEEEecCCch--hHHHHHhhhc---CCCcE
Q 002559 233 YQKRLARKISKFLVQIGFWKKIKDE-NSDLEYLCCLLQE----ALYGKSILILLDDVWEQ--DIVERFAKLY---DNDCK 302 (908)
Q Consensus 233 ~~~~l~~~i~~~L~~lg~~~~~~~~-~~~~~~l~~~l~~----~L~~kr~LLVLDDV~~~--~~~e~l~~~~---~~gsr 302 (908)
- +.+.. ....... ..... ....++....... -..+++-++|+|++... ..++.|...+ ++.+.
T Consensus 79 -C----~~i~~-~~~~dv~-~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~v 151 (563)
T PRK06647 79 -C----KSIDN-DNSLDVI-EIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIV 151 (563)
T ss_pred -H----HHHHc-CCCCCeE-EecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEE
Confidence 0 01100 0000000 00001 1233333322211 12356678999999754 4566676544 34555
Q ss_pred EEEEcc-chhhhh----hccccee-cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhHhCCchhh
Q 002559 303 YLVTTR-NEAVYE----ITEAEKV-ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGHHPLT 364 (908)
Q Consensus 303 ILVTTR-~~~va~----~~~~~~~-~L~~~ea~~Lf~~~~~~~~~~~~~~l~~i~~~Iv~~cgGLPLA 364 (908)
+|++|. ...+.. .+..... +++.++-.+.+.+.+...+. .-.++....|++.++|.+-.
T Consensus 152 fI~~tte~~kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi---~id~eAl~lLa~~s~GdlR~ 216 (563)
T PRK06647 152 FIFATTEVHKLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQI---KYEDEALKWIAYKSTGSVRD 216 (563)
T ss_pred EEEecCChHHhHHHHHHhceEEEecCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHH
Confidence 555553 333332 2222222 67777776666665543322 22236677788888887643
No 106
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=96.84 E-value=0.015 Score=67.99 Aligned_cols=26 Identities=23% Similarity=0.336 Sum_probs=22.7
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
..-+.|+|+.|+|||+|++++++...
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~ 166 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALR 166 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHH
Confidence 35678999999999999999998764
No 107
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.84 E-value=0.01 Score=74.92 Aligned_cols=47 Identities=13% Similarity=0.227 Sum_probs=37.7
Q ss_pred cCCCcCccHHHHHHHHHhccCCceEEEEEecCCCChHHHHHHHHhCCC
Q 002559 158 EQGYPISSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 158 ~~~~g~e~~~~~l~~LL~~~~~~~vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
.+.+|++...+.+...|..... .-+.++|.+|+|||+||+.+++...
T Consensus 178 ~~vigr~~ei~~~i~iL~r~~~-~n~lL~G~pGvGKT~l~~~la~~i~ 224 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRRTK-NNPVLIGEPGVGKTAIVEGLAQRII 224 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcCCc-CceEEECCCCCCHHHHHHHHHHHhh
Confidence 5677999888888888876433 3455999999999999999998764
No 108
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.83 E-value=0.013 Score=67.57 Aligned_cols=158 Identities=18% Similarity=0.236 Sum_probs=85.0
Q ss_pred HHHHHHHHHhccCCce-EEEEEecCCCChHHHHHHHHhCCCCccccceEEEeeeeeeccccccCCcchHHHHHHHHHHHH
Q 002559 166 KSKFLRKLLEQEETHQ-VILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACNGSKSDYQKRLARKISKF 244 (908)
Q Consensus 166 ~~~~l~~LL~~~~~~~-vV~I~GmgGiGKTtLA~~v~~~~~~~F~~~~f~~~v~~wv~~~~~~~s~~~~~~~l~~~i~~~ 244 (908)
+...+..+....+..+ ++.|+|+-++||||+++.+....... .+++++.. ......++. +...
T Consensus 22 ~~~~~~~l~~~~~~~~~i~~i~GpR~~GKTtll~~l~~~~~~~----~iy~~~~d----------~~~~~~~l~-d~~~- 85 (398)
T COG1373 22 RRKLLPRLIKKLDLRPFIILILGPRQVGKTTLLKLLIKGLLEE----IIYINFDD----------LRLDRIELL-DLLR- 85 (398)
T ss_pred HHhhhHHHHhhcccCCcEEEEECCccccHHHHHHHHHhhCCcc----eEEEEecc----------hhcchhhHH-HHHH-
Confidence 3344444444332222 99999999999999998877766544 44444321 111111111 1111
Q ss_pred HHHhccccccCCCCCCHHHHHHHHHHHhccCCeeEEEecCCchhHHHHHhhhc-CCCc-EEEEEccchhhhhhc------
Q 002559 245 LVQIGFWKKIKDENSDLEYLCCLLQEALYGKSILILLDDVWEQDIVERFAKLY-DNDC-KYLVTTRNEAVYEIT------ 316 (908)
Q Consensus 245 L~~lg~~~~~~~~~~~~~~l~~~l~~~L~~kr~LLVLDDV~~~~~~e~l~~~~-~~gs-rILVTTR~~~va~~~------ 316 (908)
.+.+.-..++..++||.|.....|+.....+ ..|- +|++|+-+..+....
T Consensus 86 ----------------------~~~~~~~~~~~yifLDEIq~v~~W~~~lk~l~d~~~~~v~itgsss~ll~~~~~~~L~ 143 (398)
T COG1373 86 ----------------------AYIELKEREKSYIFLDEIQNVPDWERALKYLYDRGNLDVLITGSSSSLLSKEISESLA 143 (398)
T ss_pred ----------------------HHHHhhccCCceEEEecccCchhHHHHHHHHHccccceEEEECCchhhhccchhhhcC
Confidence 1111111177899999999999998877655 3222 788888877544311
Q ss_pred ccc---ee-cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhHhCCchhhHhHh
Q 002559 317 EAE---KV-ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGHHPLTVAVM 368 (908)
Q Consensus 317 ~~~---~~-~L~~~ea~~Lf~~~~~~~~~~~~~~l~~i~~~Iv~~cgGLPLAI~~i 368 (908)
|-. .+ ||+-.|-..+.. .... .... +..-.-.-..||.|-++..-
T Consensus 144 GR~~~~~l~PlSF~Efl~~~~-----~~~~-~~~~-~~~f~~Yl~~GGfP~~v~~~ 192 (398)
T COG1373 144 GRGKDLELYPLSFREFLKLKG-----EEIE-PSKL-ELLFEKYLETGGFPESVKAD 192 (398)
T ss_pred CCceeEEECCCCHHHHHhhcc-----cccc-hhHH-HHHHHHHHHhCCCcHHHhCc
Confidence 111 11 888777544311 0000 0011 11222334579999877643
No 109
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.79 E-value=0.017 Score=71.44 Aligned_cols=46 Identities=22% Similarity=0.220 Sum_probs=36.9
Q ss_pred cCCCcCccHHHHHHHHHhccCCceEEEEEecCCCChHHHHHHHHhCC
Q 002559 158 EQGYPISSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDP 204 (908)
Q Consensus 158 ~~~~g~e~~~~~l~~LL~~~~~~~vV~I~GmgGiGKTtLA~~v~~~~ 204 (908)
.+.+|+++..+.+...|..... .-+.++|.+|+|||++|+.+++..
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~~-~n~LLvGppGvGKT~lae~la~~i 231 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRRK-NNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccCC-CCeEEECCCCCCHHHHHHHHHHHH
Confidence 4567999998888888876433 334589999999999999999764
No 110
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=96.79 E-value=0.067 Score=67.08 Aligned_cols=51 Identities=22% Similarity=0.437 Sum_probs=36.9
Q ss_pred cCCCcCccHHHHHHHHHhc-----cCCceEEEEEecCCCChHHHHHHHHhCCCCcc
Q 002559 158 EQGYPISSKSKFLRKLLEQ-----EETHQVILIVGLSGIGKSCLARQVASDPPERF 208 (908)
Q Consensus 158 ~~~~g~e~~~~~l~~LL~~-----~~~~~vV~I~GmgGiGKTtLA~~v~~~~~~~F 208 (908)
...+|.++-.+.+..++.. ....+++.++|++|+|||++|+.+++.....|
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~ 375 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNRKF 375 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCe
Confidence 3456777666666655431 22345899999999999999999999876544
No 111
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=96.79 E-value=0.012 Score=69.42 Aligned_cols=47 Identities=26% Similarity=0.374 Sum_probs=34.2
Q ss_pred CcCccHHHHHHHHHhc------------cCCceEEEEEecCCCChHHHHHHHHhCCCCc
Q 002559 161 YPISSKSKFLRKLLEQ------------EETHQVILIVGLSGIGKSCLARQVASDPPER 207 (908)
Q Consensus 161 ~g~e~~~~~l~~LL~~------------~~~~~vV~I~GmgGiGKTtLA~~v~~~~~~~ 207 (908)
.|.++..+.+...+.. -..++-+.++|++|+|||++|+++++.....
T Consensus 185 gGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~ 243 (512)
T TIGR03689 185 GGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQR 243 (512)
T ss_pred CChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccc
Confidence 3677666666655431 1235668999999999999999999987643
No 112
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.79 E-value=0.0029 Score=65.78 Aligned_cols=111 Identities=13% Similarity=0.114 Sum_probs=64.5
Q ss_pred eEEEEEecCCCChHHHHHHHHhCCCCccccceEEEeeeeeeccccccCCcchHHHHHHHHHHHHHHHhccccccCCCCCC
Q 002559 181 QVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACNGSKSDYQKRLARKISKFLVQIGFWKKIKDENSD 260 (908)
Q Consensus 181 ~vV~I~GmgGiGKTtLA~~v~~~~~~~F~~~~f~~~v~~wv~~~~~~~s~~~~~~~l~~~i~~~L~~lg~~~~~~~~~~~ 260 (908)
.+|.|+|+.|+||||++..+...........++.+.- ..+..... ...+ .. ......+
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~-----------~~E~~~~~-~~~~---i~-------q~~vg~~ 59 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIED-----------PIEFVHES-KRSL---IN-------QREVGLD 59 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcC-----------CccccccC-ccce---ee-------ecccCCC
Confidence 4789999999999999998877655333222221110 00000000 0000 00 0000111
Q ss_pred HHHHHHHHHHHhccCCeeEEEecCCchhHHHHHhhhcCCCcEEEEEccchhhh
Q 002559 261 LEYLCCLLQEALYGKSILILLDDVWEQDIVERFAKLYDNDCKYLVTTRNEAVY 313 (908)
Q Consensus 261 ~~~l~~~l~~~L~~kr~LLVLDDV~~~~~~e~l~~~~~~gsrILVTTR~~~va 313 (908)
.....+.++..+....=.+++|.+.+.+.+..+......|..++.|+...++.
T Consensus 60 ~~~~~~~i~~aLr~~pd~ii~gEird~e~~~~~l~~a~~G~~v~~t~Ha~~~~ 112 (198)
T cd01131 60 TLSFENALKAALRQDPDVILVGEMRDLETIRLALTAAETGHLVMSTLHTNSAA 112 (198)
T ss_pred ccCHHHHHHHHhcCCcCEEEEcCCCCHHHHHHHHHHHHcCCEEEEEecCCcHH
Confidence 22345567777777778999999999888777665555677788888776544
No 113
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.73 E-value=0.63 Score=59.03 Aligned_cols=46 Identities=15% Similarity=0.199 Sum_probs=31.9
Q ss_pred CCcCccHHHHHHHHHhc--------cCCceEEEEEecCCCChHHHHHHHHhCCC
Q 002559 160 GYPISSKSKFLRKLLEQ--------EETHQVILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 160 ~~g~e~~~~~l~~LL~~--------~~~~~vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
.+|.+.-++.+...+.. +.+..++.++|++|+|||+||+.+++...
T Consensus 570 viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~ 623 (857)
T PRK10865 570 VIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMF 623 (857)
T ss_pred EeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhh
Confidence 34666655555554432 11235788999999999999999997653
No 114
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=96.68 E-value=0.039 Score=58.58 Aligned_cols=53 Identities=21% Similarity=0.289 Sum_probs=36.0
Q ss_pred cccccCCCcCccHHHHHHHHHh---ccCCceEEEEEecCCCChHHHHHHHHhCCCC
Q 002559 154 KVKAEQGYPISSKSKFLRKLLE---QEETHQVILIVGLSGIGKSCLARQVASDPPE 206 (908)
Q Consensus 154 ~~~~~~~~g~e~~~~~l~~LL~---~~~~~~vV~I~GmgGiGKTtLA~~v~~~~~~ 206 (908)
.+.....+|.+...+.+..-.. .+.+..-|.+||..|+|||+|++++.+....
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~ 78 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYAD 78 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhh
Confidence 3444566787765555543222 1234567778999999999999999887653
No 115
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=96.67 E-value=0.05 Score=65.48 Aligned_cols=177 Identities=16% Similarity=0.149 Sum_probs=93.6
Q ss_pred cCCCcCccHHHHHHHHHhccCCceEEEEEecCCCChHHHHHHHHhCCCC-----ccccceEEEeeeeeeccccccCCcch
Q 002559 158 EQGYPISSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPPE-----RFVGGAVELGFGQWCSRAACNGSKSD 232 (908)
Q Consensus 158 ~~~~g~e~~~~~l~~LL~~~~~~~vV~I~GmgGiGKTtLA~~v~~~~~~-----~F~~~~f~~~v~~wv~~~~~~~s~~~ 232 (908)
...+|.+...+.+...+..+.-.+.+.++|+.|+||||+|+.+++..-. ..+|+. |.
T Consensus 16 ~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~-------------C~----- 77 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNE-------------CE----- 77 (559)
T ss_pred HhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCc-------------cH-----
Confidence 4556888888888888877655677889999999999999999875431 112211 10
Q ss_pred HHHHHHHHHHHHHHHhcccc--cc-CCCCCCHHHHHHHHHHH----hccCCeeEEEecCCch--hHHHHHhhhc---CCC
Q 002559 233 YQKRLARKISKFLVQIGFWK--KI-KDENSDLEYLCCLLQEA----LYGKSILILLDDVWEQ--DIVERFAKLY---DND 300 (908)
Q Consensus 233 ~~~~l~~~i~~~L~~lg~~~--~~-~~~~~~~~~l~~~l~~~----L~~kr~LLVLDDV~~~--~~~e~l~~~~---~~g 300 (908)
. .+.+ ......+ .. .......++..+.+... ..+++-++|+|++... ..++.|...+ +..
T Consensus 78 ~----C~~i----~~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~ 149 (559)
T PRK05563 78 I----CKAI----TNGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAH 149 (559)
T ss_pred H----HHHH----hcCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCC
Confidence 0 0111 0000000 00 00011233222222211 2345678899999854 5577776544 334
Q ss_pred cEEE-EEccchhhhhh----ccccee-cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhHhCCchh
Q 002559 301 CKYL-VTTRNEAVYEI----TEAEKV-ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGHHPL 363 (908)
Q Consensus 301 srIL-VTTR~~~va~~----~~~~~~-~L~~~ea~~Lf~~~~~~~~~~~~~~l~~i~~~Iv~~cgGLPL 363 (908)
+.+| .||....+... +..... +++.++....+...+...+... ..+....|++.++|.+.
T Consensus 150 ~ifIlatt~~~ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i---~~~al~~ia~~s~G~~R 215 (559)
T PRK05563 150 VIFILATTEPHKIPATILSRCQRFDFKRISVEDIVERLKYILDKEGIEY---EDEALRLIARAAEGGMR 215 (559)
T ss_pred eEEEEEeCChhhCcHHHHhHheEEecCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHH
Confidence 4444 45444333322 211112 5677776666666554433211 23556777777777654
No 116
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=96.66 E-value=0.025 Score=67.27 Aligned_cols=28 Identities=36% Similarity=0.532 Sum_probs=23.7
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCCCCc
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDPPER 207 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~~~~ 207 (908)
++-+.++|++|+|||+||+.+++.....
T Consensus 88 ~~giLL~GppGtGKT~la~alA~~~~~~ 115 (495)
T TIGR01241 88 PKGVLLVGPPGTGKTLLAKAVAGEAGVP 115 (495)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 4568899999999999999999875433
No 117
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.66 E-value=0.0014 Score=66.93 Aligned_cols=26 Identities=27% Similarity=0.477 Sum_probs=21.4
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
..-+.++|.+|+|||.||..+++...
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~ 72 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAI 72 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhc
Confidence 45689999999999999999987654
No 118
>PRK06921 hypothetical protein; Provisional
Probab=96.65 E-value=0.0034 Score=68.34 Aligned_cols=28 Identities=25% Similarity=0.415 Sum_probs=24.5
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCCCCc
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDPPER 207 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~~~~ 207 (908)
...+.++|.+|+|||.||.++++....+
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~ 144 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRK 144 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhh
Confidence 5678999999999999999999987644
No 119
>CHL00181 cbbX CbbX; Provisional
Probab=96.62 E-value=0.03 Score=61.64 Aligned_cols=24 Identities=25% Similarity=0.299 Sum_probs=20.8
Q ss_pred eEEEEEecCCCChHHHHHHHHhCC
Q 002559 181 QVILIVGLSGIGKSCLARQVASDP 204 (908)
Q Consensus 181 ~vV~I~GmgGiGKTtLA~~v~~~~ 204 (908)
..+.++|++|+||||+|+.+++..
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~ 83 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADIL 83 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHH
Confidence 357899999999999999998753
No 120
>PRK10536 hypothetical protein; Provisional
Probab=96.60 E-value=0.031 Score=59.92 Aligned_cols=136 Identities=15% Similarity=0.163 Sum_probs=69.5
Q ss_pred cCccHHHHHHHHHhccCCceEEEEEecCCCChHHHHHHHHhC-C-CCccccceEEEeeeeeecccc----ccCCcchHHH
Q 002559 162 PISSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASD-P-PERFVGGAVELGFGQWCSRAA----CNGSKSDYQK 235 (908)
Q Consensus 162 g~e~~~~~l~~LL~~~~~~~vV~I~GmgGiGKTtLA~~v~~~-~-~~~F~~~~f~~~v~~wv~~~~----~~~s~~~~~~ 235 (908)
|+......+...+.. ..+|.+.|..|+|||+||.+++.+ . ...|. .++..+ .-+.... -..+..+-..
T Consensus 59 p~n~~Q~~~l~al~~---~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~-kIiI~R--P~v~~ge~LGfLPG~~~eK~~ 132 (262)
T PRK10536 59 ARNEAQAHYLKAIES---KQLIFATGEAGCGKTWISAAKAAEALIHKDVD-RIIVTR--PVLQADEDLGFLPGDIAEKFA 132 (262)
T ss_pred CCCHHHHHHHHHHhc---CCeEEEECCCCCCHHHHHHHHHHHHHhcCCee-EEEEeC--CCCCchhhhCcCCCCHHHHHH
Confidence 455555555555543 359999999999999999998874 2 33343 222211 1111100 0001112222
Q ss_pred HHHHHHHHHHHHhccccccCCCCCCHHHHHH--------HHHHHhccCC---eeEEEecCCch--hHHHHHhhhcCCCcE
Q 002559 236 RLARKISKFLVQIGFWKKIKDENSDLEYLCC--------LLQEALYGKS---ILILLDDVWEQ--DIVERFAKLYDNDCK 302 (908)
Q Consensus 236 ~l~~~i~~~L~~lg~~~~~~~~~~~~~~l~~--------~l~~~L~~kr---~LLVLDDV~~~--~~~e~l~~~~~~gsr 302 (908)
-...-+.+.|..+- .....+.+.. .-..+++|+. -+||+|.+.+. .+...+....+.+|+
T Consensus 133 p~~~pi~D~L~~~~-------~~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~~~~k~~ltR~g~~sk 205 (262)
T PRK10536 133 PYFRPVYDVLVRRL-------GASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMKMFLTRLGENVT 205 (262)
T ss_pred HHHHHHHHHHHHHh-------ChHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCHHHHHHHHhhcCCCCE
Confidence 22233333332210 0001111100 0112455654 59999999754 566667766789999
Q ss_pred EEEEccch
Q 002559 303 YLVTTRNE 310 (908)
Q Consensus 303 ILVTTR~~ 310 (908)
+|+|--..
T Consensus 206 ~v~~GD~~ 213 (262)
T PRK10536 206 VIVNGDIT 213 (262)
T ss_pred EEEeCChh
Confidence 99987443
No 121
>PRK08181 transposase; Validated
Probab=96.59 E-value=0.0035 Score=68.12 Aligned_cols=25 Identities=32% Similarity=0.357 Sum_probs=21.8
Q ss_pred eEEEEEecCCCChHHHHHHHHhCCC
Q 002559 181 QVILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 181 ~vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
.-+.++|++|+|||.||..+++...
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~ 131 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALI 131 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHH
Confidence 4588999999999999999987654
No 122
>CHL00176 ftsH cell division protein; Validated
Probab=96.55 E-value=0.024 Score=68.98 Aligned_cols=47 Identities=21% Similarity=0.364 Sum_probs=32.7
Q ss_pred CCCcCccHHHHHHHHHh---cc--------CCceEEEEEecCCCChHHHHHHHHhCCC
Q 002559 159 QGYPISSKSKFLRKLLE---QE--------ETHQVILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 159 ~~~g~e~~~~~l~~LL~---~~--------~~~~vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
...|.++..+.+..++. .. ..++-|.++|++|+|||+||+.++....
T Consensus 184 dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~ 241 (638)
T CHL00176 184 DIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAE 241 (638)
T ss_pred hccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 34466665555555542 11 1145689999999999999999998654
No 123
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=96.51 E-value=0.05 Score=58.42 Aligned_cols=51 Identities=20% Similarity=0.312 Sum_probs=38.6
Q ss_pred cCCCcCccHHHHHHHHHhc----cCCceEEEEEecCCCChHHHHHHHHhCCCCcc
Q 002559 158 EQGYPISSKSKFLRKLLEQ----EETHQVILIVGLSGIGKSCLARQVASDPPERF 208 (908)
Q Consensus 158 ~~~~g~e~~~~~l~~LL~~----~~~~~vV~I~GmgGiGKTtLA~~v~~~~~~~F 208 (908)
...+|.+.-.+.+.-.+.. +...-.|.++|++|.||||||.-+++....++
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~ 80 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVNL 80 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCe
Confidence 3455777666666666553 23377899999999999999999999887554
No 124
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=96.50 E-value=0.0073 Score=68.49 Aligned_cols=33 Identities=24% Similarity=0.129 Sum_probs=27.3
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCCCCc-cccce
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDPPER-FVGGA 212 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~~~~-F~~~~ 212 (908)
-..++|+|++|+|||||++.+++.+..+ |+..+
T Consensus 168 Gq~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v 201 (415)
T TIGR00767 168 GQRGLIVAPPKAGKTVLLQKIAQAITRNHPEVEL 201 (415)
T ss_pred CCEEEEECCCCCChhHHHHHHHHhhcccCCceEE
Confidence 4678999999999999999999988754 65433
No 125
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=96.49 E-value=0.44 Score=54.55 Aligned_cols=205 Identities=16% Similarity=0.177 Sum_probs=110.7
Q ss_pred CccHHHHHHHHHhccCCceEEEEEecCCCChHHHH-HHHHhCCCCccccceEEEeeeeeeccccccCCcchHHHHHHHH-
Q 002559 163 ISSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLA-RQVASDPPERFVGGAVELGFGQWCSRAACNGSKSDYQKRLARK- 240 (908)
Q Consensus 163 ~e~~~~~l~~LL~~~~~~~vV~I~GmgGiGKTtLA-~~v~~~~~~~F~~~~f~~~v~~wv~~~~~~~s~~~~~~~l~~~- 240 (908)
|.+..+.|+.+|....+ ..|.|.|+-|+||+.|+ .++.++.+. ++++|...-+.. .+.......++.+
T Consensus 1 R~e~~~~L~~wL~e~~~-TFIvV~GPrGSGK~elV~d~~L~~r~~-----vL~IDC~~i~~a----r~D~~~I~~lA~qv 70 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENPN-TFIVVQGPRGSGKRELVMDHVLKDRKN-----VLVIDCDQIVKA----RGDAAFIKNLASQV 70 (431)
T ss_pred CchHHHHHHHHHhcCCC-eEEEEECCCCCCccHHHHHHHHhCCCC-----EEEEEChHhhhc----cChHHHHHHHHHhc
Confidence 34667888888876543 68999999999999999 777665432 444444332211 0222233332222
Q ss_pred --------------HHHHHHHhccccccCCCCCCHHHHHHHHHH----Hhc--------------------------cCC
Q 002559 241 --------------ISKFLVQIGFWKKIKDENSDLEYLCCLLQE----ALY--------------------------GKS 276 (908)
Q Consensus 241 --------------i~~~L~~lg~~~~~~~~~~~~~~l~~~l~~----~L~--------------------------~kr 276 (908)
+++...+ |.......-..+.+.....+.+ .|+ .+|
T Consensus 71 GY~PvFsw~nSiss~IDLa~q-GltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~ 149 (431)
T PF10443_consen 71 GYFPVFSWMNSISSFIDLAVQ-GLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERR 149 (431)
T ss_pred CCCcchHHHHHHHHHHHHHHh-hccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccC
Confidence 2221111 1110111111233332222111 111 126
Q ss_pred eeEEEecCCch-----hHHHHHhhhc-----CCCcEEEEEccchhhhh----hccccee------cCChhhHHHHHHHHh
Q 002559 277 ILILLDDVWEQ-----DIVERFAKLY-----DNDCKYLVTTRNEAVYE----ITEAEKV------ELSKDDIMEISKSIL 336 (908)
Q Consensus 277 ~LLVLDDV~~~-----~~~e~l~~~~-----~~gsrILVTTR~~~va~----~~~~~~~------~L~~~ea~~Lf~~~~ 336 (908)
=+||+||.-.. ..|+.+..|- .+=-+||++|-+..... ....... ..+.+.|.++....+
T Consensus 150 PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~L 229 (431)
T PF10443_consen 150 PVVVIDNFLHKAEENDFIYDKLAEWAASLVQNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQL 229 (431)
T ss_pred CEEEEcchhccCcccchHHHHHHHHHHHHHhcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHHh
Confidence 78999998543 2345555543 23458999988765444 2222221 356788888877666
Q ss_pred hhcccc------------cC-----cchHHHHHHHHhHhCCchhhHhHhhhhhhccCCH
Q 002559 337 LYHSLL------------AE-----EELPAAAESLLERCGHHPLTVAVMGKALRKELRS 378 (908)
Q Consensus 337 ~~~~~~------------~~-----~~l~~i~~~Iv~~cgGLPLAI~~ig~~L~~~~~~ 378 (908)
...... .+ ..........++.+||==.-+..+++.++...++
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p 288 (431)
T PF10443_consen 230 DEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESP 288 (431)
T ss_pred cccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCH
Confidence 543111 00 1234556777888888888888888888854343
No 126
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.49 E-value=1.2 Score=56.70 Aligned_cols=47 Identities=17% Similarity=0.213 Sum_probs=34.2
Q ss_pred CCCcCccHHHHHHHHHhc------cC--CceEEEEEecCCCChHHHHHHHHhCCC
Q 002559 159 QGYPISSKSKFLRKLLEQ------EE--THQVILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 159 ~~~g~e~~~~~l~~LL~~------~~--~~~vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
..+|.+.-++.+...+.. ++ ...++.++|++|+|||++|+.++....
T Consensus 566 ~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~ 620 (852)
T TIGR03346 566 RVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLF 620 (852)
T ss_pred ccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 456777766666665543 11 246788999999999999999998653
No 127
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=96.48 E-value=0.035 Score=63.35 Aligned_cols=128 Identities=16% Similarity=0.215 Sum_probs=71.9
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCCCCccccc-eEEEeeeeeeccccccCCcchHHHHHHHHHHHHHHHhccccccCCCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDPPERFVGG-AVELGFGQWCSRAACNGSKSDYQKRLARKISKFLVQIGFWKKIKDEN 258 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~~~~F~~~-~f~~~v~~wv~~~~~~~s~~~~~~~l~~~i~~~L~~lg~~~~~~~~~ 258 (908)
...+-|||..|.|||.|++++.+......+.. ++++ +.......+...+..
T Consensus 113 ~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~-------------~se~f~~~~v~a~~~--------------- 164 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYL-------------TSEDFTNDFVKALRD--------------- 164 (408)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEec-------------cHHHHHHHHHHHHHh---------------
Confidence 67899999999999999999999876555432 3221 223333333333321
Q ss_pred CCHHHHHHHHHHHhccCCeeEEEecCCch---hH-----HHHHhhhcCCCcEEEEEccchh---------hhhhcccce-
Q 002559 259 SDLEYLCCLLQEALYGKSILILLDDVWEQ---DI-----VERFAKLYDNDCKYLVTTRNEA---------VYEITEAEK- 320 (908)
Q Consensus 259 ~~~~~l~~~l~~~L~~kr~LLVLDDV~~~---~~-----~e~l~~~~~~gsrILVTTR~~~---------va~~~~~~~- 320 (908)
.-...+++.. .-=++++||++-. +. +..+......|..||+|++... +........
T Consensus 165 ----~~~~~Fk~~y--~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~ 238 (408)
T COG0593 165 ----NEMEKFKEKY--SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLV 238 (408)
T ss_pred ----hhHHHHHHhh--ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeE
Confidence 1233455555 3348899999642 11 2222233356668999996542 111111111
Q ss_pred --e-cCChhhHHHHHHHHhhhccc
Q 002559 321 --V-ELSKDDIMEISKSILLYHSL 341 (908)
Q Consensus 321 --~-~L~~~ea~~Lf~~~~~~~~~ 341 (908)
+ +.+.+....++.+.+...+.
T Consensus 239 ~~I~~Pd~e~r~aiL~kka~~~~~ 262 (408)
T COG0593 239 VEIEPPDDETRLAILRKKAEDRGI 262 (408)
T ss_pred EeeCCCCHHHHHHHHHHHHHhcCC
Confidence 1 56666666666665544433
No 128
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.47 E-value=0.098 Score=64.04 Aligned_cols=115 Identities=18% Similarity=0.253 Sum_probs=61.6
Q ss_pred CCCcCccHHHHHHHHHh-------c-cCCceEEEEEecCCCChHHHHHHHHhCCCCccccceEEEeeeeeeccccccCCc
Q 002559 159 QGYPISSKSKFLRKLLE-------Q-EETHQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACNGSK 230 (908)
Q Consensus 159 ~~~g~e~~~~~l~~LL~-------~-~~~~~vV~I~GmgGiGKTtLA~~v~~~~~~~F~~~~f~~~v~~wv~~~~~~~s~ 230 (908)
..+|.++-++.+..-+. + ..+..+....|+.|+|||-||++++..+-+.= ...+-+|+.
T Consensus 492 rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e-~aliR~DMS------------ 558 (786)
T COG0542 492 RVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDE-QALIRIDMS------------ 558 (786)
T ss_pred ceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCC-ccceeechH------------
Confidence 34455555555444332 1 12367888899999999999999998664210 112222222
Q ss_pred chHHHH-HHHHHHHHHHHhccccccCCCCCCHHHHHHHHHHHhccCCe-eEEEecCC--chhHHHHHhhhcC
Q 002559 231 SDYQKR-LARKISKFLVQIGFWKKIKDENSDLEYLCCLLQEALYGKSI-LILLDDVW--EQDIVERFAKLYD 298 (908)
Q Consensus 231 ~~~~~~-l~~~i~~~L~~lg~~~~~~~~~~~~~~l~~~l~~~L~~kr~-LLVLDDV~--~~~~~e~l~~~~~ 298 (908)
+++.+ -.+.++ |.+ +.... -++ -..+-+..+.++| +|.||.|. +++.++.|...++
T Consensus 559 -Ey~EkHsVSrLI------GaP---PGYVG-yee-GG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlD 618 (786)
T COG0542 559 -EYMEKHSVSRLI------GAP---PGYVG-YEE-GGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLD 618 (786)
T ss_pred -HHHHHHHHHHHh------CCC---CCCce-ecc-ccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhc
Confidence 22211 112221 321 11111 111 2234455667777 77789997 5677887776664
No 129
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=96.46 E-value=0.024 Score=61.55 Aligned_cols=25 Identities=24% Similarity=0.287 Sum_probs=21.7
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDP 204 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~ 204 (908)
...+.++|++|+||||+|+.+++..
T Consensus 42 ~~~vll~GppGtGKTtlA~~ia~~l 66 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVARILGKLF 66 (261)
T ss_pred cceEEEEcCCCCCHHHHHHHHHHHH
Confidence 4568899999999999999998754
No 130
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.44 E-value=0.039 Score=60.93 Aligned_cols=171 Identities=18% Similarity=0.268 Sum_probs=94.7
Q ss_pred cCccHHHHHHHHHhcc------------CCceEEEEEecCCCChHHHHHHHHhCCCCccccceEEEeeeeeeccccccCC
Q 002559 162 PISSKSKFLRKLLEQE------------ETHQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACNGS 229 (908)
Q Consensus 162 g~e~~~~~l~~LL~~~------------~~~~vV~I~GmgGiGKTtLA~~v~~~~~~~F~~~~f~~~v~~wv~~~~~~~s 229 (908)
|.++..++|++..+-. ..++=|.+||++|.|||-||++|+++-...|- .+ .
T Consensus 155 GL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFI------rv-----------v 217 (406)
T COG1222 155 GLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFI------RV-----------V 217 (406)
T ss_pred CHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEE------Ee-----------c
Confidence 6777777777765421 23677899999999999999999998765542 12 1
Q ss_pred cchHHHHHHHHHHHHHHHhccccccCCCCCCHHHHHHHHHHHhc-cCCeeEEEecCCch-------------hHHHHHhh
Q 002559 230 KSDYQKRLARKISKFLVQIGFWKKIKDENSDLEYLCCLLQEALY-GKSILILLDDVWEQ-------------DIVERFAK 295 (908)
Q Consensus 230 ~~~~~~~l~~~i~~~L~~lg~~~~~~~~~~~~~~l~~~l~~~L~-~kr~LLVLDDV~~~-------------~~~e~l~~ 295 (908)
.++. .++.+ | +-..+++.+.+.-+ ..+..|.+|.++.. +.-..+..
T Consensus 218 gSEl----VqKYi------G----------EGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmle 277 (406)
T COG1222 218 GSEL----VQKYI------G----------EGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLE 277 (406)
T ss_pred cHHH----HHHHh------c----------cchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHH
Confidence 1111 11111 1 11223333333333 35799999998632 11122221
Q ss_pred h------cCC--CcEEEEEccchhhhh--hccccee------cCChhhHHH-HHHHHhhhcccccCcchHHHHHHHHhHh
Q 002559 296 L------YDN--DCKYLVTTRNEAVYE--ITEAEKV------ELSKDDIME-ISKSILLYHSLLAEEELPAAAESLLERC 358 (908)
Q Consensus 296 ~------~~~--gsrILVTTR~~~va~--~~~~~~~------~L~~~ea~~-Lf~~~~~~~~~~~~~~l~~i~~~Iv~~c 358 (908)
. |.+ .-|||..|-..++.. ...+.+. ||+..++.. +|+-...+-....+-++ +.+++.|
T Consensus 278 LL~qlDGFD~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~----e~la~~~ 353 (406)
T COG1222 278 LLNQLDGFDPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDL----ELLARLT 353 (406)
T ss_pred HHHhccCCCCCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCH----HHHHHhc
Confidence 1 222 458999887776654 3333332 788777754 45444433333233333 4555666
Q ss_pred CCch----hhHhHhhhhhh
Q 002559 359 GHHP----LTVAVMGKALR 373 (908)
Q Consensus 359 gGLP----LAI~~ig~~L~ 373 (908)
.|.- -|+.+=|++++
T Consensus 354 ~g~sGAdlkaictEAGm~A 372 (406)
T COG1222 354 EGFSGADLKAICTEAGMFA 372 (406)
T ss_pred CCCchHHHHHHHHHHhHHH
Confidence 6653 34555556554
No 131
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=96.38 E-value=0.034 Score=61.14 Aligned_cols=23 Identities=26% Similarity=0.317 Sum_probs=19.9
Q ss_pred EEEEEecCCCChHHHHHHHHhCC
Q 002559 182 VILIVGLSGIGKSCLARQVASDP 204 (908)
Q Consensus 182 vV~I~GmgGiGKTtLA~~v~~~~ 204 (908)
-+.++|++|+|||++|+.+++..
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l 82 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQIL 82 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999998887654
No 132
>PRK07261 topology modulation protein; Provisional
Probab=96.33 E-value=0.0097 Score=60.33 Aligned_cols=24 Identities=46% Similarity=0.631 Sum_probs=21.0
Q ss_pred EEEEEecCCCChHHHHHHHHhCCC
Q 002559 182 VILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 182 vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
.|.|+|++|+||||||+.+.....
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~ 25 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYN 25 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999987643
No 133
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.32 E-value=0.037 Score=66.96 Aligned_cols=48 Identities=21% Similarity=0.271 Sum_probs=36.5
Q ss_pred cCCCcCccHHHHHHHHHhcc----CCceEEEEEecCCCChHHHHHHHHhCCC
Q 002559 158 EQGYPISSKSKFLRKLLEQE----ETHQVILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 158 ~~~~g~e~~~~~l~~LL~~~----~~~~vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
....+-+...+.+..++... ...+++.|+|++|+||||+++.++....
T Consensus 84 del~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~ 135 (637)
T TIGR00602 84 HELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELG 135 (637)
T ss_pred HHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhh
Confidence 34446667777787777642 2246799999999999999999998765
No 134
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.30 E-value=0.0095 Score=66.71 Aligned_cols=27 Identities=26% Similarity=0.475 Sum_probs=23.5
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCCCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDPPE 206 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~~~ 206 (908)
..-+.++|.+|+|||.||.++++....
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~ 209 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLD 209 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHH
Confidence 367899999999999999999987643
No 135
>PRK06526 transposase; Provisional
Probab=96.30 E-value=0.01 Score=64.08 Aligned_cols=26 Identities=23% Similarity=0.372 Sum_probs=22.1
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
..-+.|+|++|+|||+||..+.+...
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~ 123 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRAC 123 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHH
Confidence 45688999999999999999987643
No 136
>PRK12377 putative replication protein; Provisional
Probab=96.29 E-value=0.011 Score=63.47 Aligned_cols=28 Identities=21% Similarity=0.329 Sum_probs=24.2
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCCCCc
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDPPER 207 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~~~~ 207 (908)
...+.++|.+|+|||+||.++++....+
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~ 128 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAK 128 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 4678899999999999999999987543
No 137
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.27 E-value=0.034 Score=58.63 Aligned_cols=49 Identities=29% Similarity=0.245 Sum_probs=33.6
Q ss_pred HHHHHHhcc-CCceEEEEEecCCCChHHHHHHHHhCCCCcc-----ccceEEEee
Q 002559 169 FLRKLLEQE-ETHQVILIVGLSGIGKSCLARQVASDPPERF-----VGGAVELGF 217 (908)
Q Consensus 169 ~l~~LL~~~-~~~~vV~I~GmgGiGKTtLA~~v~~~~~~~F-----~~~~f~~~v 217 (908)
.++.+|..+ ..-.++.|+|.+|+|||+||..++....... ...++|++.
T Consensus 7 ~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~ 61 (226)
T cd01393 7 ALDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDT 61 (226)
T ss_pred HHHHHhCCCCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEec
Confidence 455666533 2367999999999999999999976543222 245666654
No 138
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.26 E-value=0.011 Score=62.75 Aligned_cols=33 Identities=24% Similarity=0.337 Sum_probs=27.7
Q ss_pred eEEEEEecCCCChHHHHHHHHhCCCCccccceEE
Q 002559 181 QVILIVGLSGIGKSCLARQVASDPPERFVGGAVE 214 (908)
Q Consensus 181 ~vV~I~GmgGiGKTtLA~~v~~~~~~~F~~~~f~ 214 (908)
-.++|+|..|+|||||...+.......| .++|.
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~~~~~f-~~I~l 46 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYYLRHKF-DHIFL 46 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhhcccC-CEEEE
Confidence 3577999999999999999999888888 44543
No 139
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.26 E-value=0.013 Score=57.55 Aligned_cols=35 Identities=34% Similarity=0.437 Sum_probs=25.9
Q ss_pred EEEEEecCCCChHHHHHHHHhCCCCccccceEEEee
Q 002559 182 VILIVGLSGIGKSCLARQVASDPPERFVGGAVELGF 217 (908)
Q Consensus 182 vV~I~GmgGiGKTtLA~~v~~~~~~~F~~~~f~~~v 217 (908)
++.|+|.+|+||||++..++..... ....++|++.
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~-~~~~v~~~~~ 35 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIAT-KGGKVVYVDI 35 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHh-cCCEEEEEEC
Confidence 4689999999999999999876543 2344555554
No 140
>PRK09183 transposase/IS protein; Provisional
Probab=96.22 E-value=0.011 Score=64.04 Aligned_cols=25 Identities=32% Similarity=0.594 Sum_probs=21.3
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDP 204 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~ 204 (908)
...+.|+|++|+|||+||..+++..
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a 126 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEA 126 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHH
Confidence 3567799999999999999997653
No 141
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.21 E-value=0.064 Score=64.13 Aligned_cols=53 Identities=21% Similarity=0.416 Sum_probs=43.0
Q ss_pred ccCCCcCccHHHHHHHHHhc-----cCCceEEEEEecCCCChHHHHHHHHhCCCCccc
Q 002559 157 AEQGYPISSKSKFLRKLLEQ-----EETHQVILIVGLSGIGKSCLARQVASDPPERFV 209 (908)
Q Consensus 157 ~~~~~g~e~~~~~l~~LL~~-----~~~~~vV~I~GmgGiGKTtLA~~v~~~~~~~F~ 209 (908)
..+.||.++-.+.|.++|.- .-.-++++++|++|+|||+|++.+++-..++|.
T Consensus 322 d~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~Rkfv 379 (782)
T COG0466 322 DKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFV 379 (782)
T ss_pred cccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEE
Confidence 46788999877777777653 222579999999999999999999999888774
No 142
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.19 E-value=0.0039 Score=58.82 Aligned_cols=23 Identities=48% Similarity=0.679 Sum_probs=21.2
Q ss_pred EEEEEecCCCChHHHHHHHHhCC
Q 002559 182 VILIVGLSGIGKSCLARQVASDP 204 (908)
Q Consensus 182 vV~I~GmgGiGKTtLA~~v~~~~ 204 (908)
+|+|.|++|+||||+|+.+++..
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999864
No 143
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=96.17 E-value=0.11 Score=58.05 Aligned_cols=192 Identities=12% Similarity=0.105 Sum_probs=95.8
Q ss_pred CCCcCccHHHHHHHHHhccCCceEEEEEecCCCChHHHHHHHHhCCCCccccce-----E----EEeeeeeeccccccCC
Q 002559 159 QGYPISSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPPERFVGGA-----V----ELGFGQWCSRAACNGS 229 (908)
Q Consensus 159 ~~~g~e~~~~~l~~LL~~~~~~~vV~I~GmgGiGKTtLA~~v~~~~~~~F~~~~-----f----~~~v~~wv~~~~~~~s 229 (908)
..+|.+.-.+.+...+..+.-.+...++|+.|+||+++|..+++.+-..-.|+. + ..|+. |+.......+
T Consensus 5 ~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~-~i~p~~~~~g 83 (314)
T PRK07399 5 NLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLL-WVEPTYQHQG 83 (314)
T ss_pred HhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEE-EEeccccccc
Confidence 345777777777777776544689999999999999999998875421101100 0 00000 1111000000
Q ss_pred cchHHHHHHHHHHHHHHHhccccccCCCCCCHHHHHHHHHHHh-----ccCCeeEEEecCCch--hHHHHHhhhc--CCC
Q 002559 230 KSDYQKRLARKISKFLVQIGFWKKIKDENSDLEYLCCLLQEAL-----YGKSILILLDDVWEQ--DIVERFAKLY--DND 300 (908)
Q Consensus 230 ~~~~~~~l~~~i~~~L~~lg~~~~~~~~~~~~~~l~~~l~~~L-----~~kr~LLVLDDV~~~--~~~e~l~~~~--~~g 300 (908)
.. +...- +...|.. ......-.+++.. .+.+.+ .+++-++|+|+++.. ...+.++..+ |+.
T Consensus 84 ~~-----~~~~~---~~~~~~~-~~~~~~I~id~ir-~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp~ 153 (314)
T PRK07399 84 KL-----ITASE---AEEAGLK-RKAPPQIRLEQIR-EIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPGN 153 (314)
T ss_pred cc-----cchhh---hhhcccc-ccccccCcHHHHH-HHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCCC
Confidence 00 00000 0011100 0011111333322 233333 356778999999755 4566666444 235
Q ss_pred cEEEEEccch-hhhhh----ccccee-cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhHhCCchhhHhH
Q 002559 301 CKYLVTTRNE-AVYEI----TEAEKV-ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGHHPLTVAV 367 (908)
Q Consensus 301 srILVTTR~~-~va~~----~~~~~~-~L~~~ea~~Lf~~~~~~~~~~~~~~l~~i~~~Iv~~cgGLPLAI~~ 367 (908)
+.+|++|.+. .+... +..... ++++++..+.+.+.... +........++..++|.|..+..
T Consensus 154 ~~fILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~------~~~~~~~~~l~~~a~Gs~~~al~ 220 (314)
T PRK07399 154 GTLILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDE------EILNINFPELLALAQGSPGAAIA 220 (314)
T ss_pred CeEEEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhcc------ccchhHHHHHHHHcCCCHHHHHH
Confidence 5555555443 33332 222222 68888887776654321 11111236788999999975554
No 144
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.16 E-value=0.0078 Score=65.01 Aligned_cols=27 Identities=22% Similarity=0.469 Sum_probs=24.5
Q ss_pred CceEEEEEecCCCChHHHHHHHHhCCC
Q 002559 179 THQVILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 179 ~~~vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
...-+.++|.+|+|||.||.++.+...
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~ 130 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELL 130 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHH
Confidence 567788999999999999999999877
No 145
>PRK06762 hypothetical protein; Provisional
Probab=96.16 E-value=0.081 Score=53.00 Aligned_cols=25 Identities=36% Similarity=0.554 Sum_probs=22.6
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDP 204 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~ 204 (908)
+.+|.|+|++|+||||+|+.+++..
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999999876
No 146
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.10 E-value=0.2 Score=62.56 Aligned_cols=51 Identities=18% Similarity=0.393 Sum_probs=37.8
Q ss_pred cCCCcCccHHHHHHHHHhc-----cCCceEEEEEecCCCChHHHHHHHHhCCCCcc
Q 002559 158 EQGYPISSKSKFLRKLLEQ-----EETHQVILIVGLSGIGKSCLARQVASDPPERF 208 (908)
Q Consensus 158 ~~~~g~e~~~~~l~~LL~~-----~~~~~vV~I~GmgGiGKTtLA~~v~~~~~~~F 208 (908)
...||.+.-.+.|..++.. .....++.++|++|+||||+|+.++......|
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~ 377 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKY 377 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 4567888777767665542 12356899999999999999999998765443
No 147
>PHA00729 NTP-binding motif containing protein
Probab=96.07 E-value=0.013 Score=61.66 Aligned_cols=26 Identities=35% Similarity=0.410 Sum_probs=22.7
Q ss_pred CceEEEEEecCCCChHHHHHHHHhCC
Q 002559 179 THQVILIVGLSGIGKSCLARQVASDP 204 (908)
Q Consensus 179 ~~~vV~I~GmgGiGKTtLA~~v~~~~ 204 (908)
+...|.|+|.+|+||||||..+++..
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~l 41 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARDV 41 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHH
Confidence 34578999999999999999998864
No 148
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.06 E-value=0.021 Score=60.42 Aligned_cols=49 Identities=22% Similarity=0.297 Sum_probs=34.3
Q ss_pred HHHHHHhcc-CCceEEEEEecCCCChHHHHHHHHhCCCCccccceEEEeee
Q 002559 169 FLRKLLEQE-ETHQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFG 218 (908)
Q Consensus 169 ~l~~LL~~~-~~~~vV~I~GmgGiGKTtLA~~v~~~~~~~F~~~~f~~~v~ 218 (908)
.+..+|..+ ..-.++.|+|.+|+|||++|.+++...... ...++|++..
T Consensus 11 ~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~-~~~v~yi~~e 60 (225)
T PRK09361 11 MLDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAKN-GKKVIYIDTE 60 (225)
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEECC
Confidence 355566543 236799999999999999999998755322 2456676653
No 149
>PRK08118 topology modulation protein; Reviewed
Probab=96.04 E-value=0.013 Score=59.14 Aligned_cols=25 Identities=40% Similarity=0.631 Sum_probs=22.4
Q ss_pred eEEEEEecCCCChHHHHHHHHhCCC
Q 002559 181 QVILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 181 ~vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
+-|.|+|++|+||||||+.+++...
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~ 26 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLN 26 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3588999999999999999998765
No 150
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.01 E-value=0.28 Score=61.99 Aligned_cols=48 Identities=19% Similarity=0.183 Sum_probs=32.9
Q ss_pred cCCCcCccHHHHHHHHHhc-------c-CCceEEEEEecCCCChHHHHHHHHhCCC
Q 002559 158 EQGYPISSKSKFLRKLLEQ-------E-ETHQVILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 158 ~~~~g~e~~~~~l~~LL~~-------~-~~~~vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
...+|.+.-.+.+...+.. . .+...+.++|+.|+|||+||+.+++.+.
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~ 564 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFF 564 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhc
Confidence 3445766666666554431 1 1245677999999999999999998653
No 151
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=95.98 E-value=0.036 Score=69.07 Aligned_cols=26 Identities=35% Similarity=0.486 Sum_probs=22.8
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
..++.++|++|+|||+||+.+++...
T Consensus 484 ~~~~lf~Gp~GvGKT~lA~~la~~l~ 509 (731)
T TIGR02639 484 VGSFLFTGPTGVGKTELAKQLAEALG 509 (731)
T ss_pred ceeEEEECCCCccHHHHHHHHHHHhc
Confidence 45688999999999999999998763
No 152
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=95.84 E-value=0.1 Score=56.86 Aligned_cols=134 Identities=16% Similarity=0.115 Sum_probs=72.4
Q ss_pred HHHHHHHHHhccCCceEEEEEecCCCChHHHHHHHHhCCCCccccceEEEeeeeeeccccccCCcchHHHHHHHHHHHHH
Q 002559 166 KSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACNGSKSDYQKRLARKISKFL 245 (908)
Q Consensus 166 ~~~~l~~LL~~~~~~~vV~I~GmgGiGKTtLA~~v~~~~~~~F~~~~f~~~v~~wv~~~~~~~s~~~~~~~l~~~i~~~L 245 (908)
....+..+... ....-++|+|..|+|||||.+.++...... .+.++++=. -+ .......++...+. .+
T Consensus 98 ~~~~l~~l~~~-~~~~~~~i~g~~g~GKttl~~~l~~~~~~~--~G~i~~~g~-~v-------~~~d~~~ei~~~~~-~~ 165 (270)
T TIGR02858 98 ADKLLPYLVRN-NRVLNTLIISPPQCGKTTLLRDLARILSTG--ISQLGLRGK-KV-------GIVDERSEIAGCVN-GV 165 (270)
T ss_pred HHHHHHHHHhC-CCeeEEEEEcCCCCCHHHHHHHHhCccCCC--CceEEECCE-Ee-------ecchhHHHHHHHhc-cc
Confidence 33445555543 345789999999999999999999877633 222222211 11 11111123332211 11
Q ss_pred HHhccccccCCC-CCCHHHHHHHHHHHhc-cCCeeEEEecCCchhHHHHHhhhcCCCcEEEEEccchhhhh
Q 002559 246 VQIGFWKKIKDE-NSDLEYLCCLLQEALY-GKSILILLDDVWEQDIVERFAKLYDNDCKYLVTTRNEAVYE 314 (908)
Q Consensus 246 ~~lg~~~~~~~~-~~~~~~l~~~l~~~L~-~kr~LLVLDDV~~~~~~e~l~~~~~~gsrILVTTR~~~va~ 314 (908)
.+... ....+ ..+... ...+...+. ..+=++++|.+-..+.+..+......|..||+||.+..+..
T Consensus 166 ~q~~~--~~r~~v~~~~~k-~~~~~~~i~~~~P~villDE~~~~e~~~~l~~~~~~G~~vI~ttH~~~~~~ 233 (270)
T TIGR02858 166 PQHDV--GIRTDVLDGCPK-AEGMMMLIRSMSPDVIVVDEIGREEDVEALLEALHAGVSIIATAHGRDVED 233 (270)
T ss_pred ccccc--cccccccccchH-HHHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEechhHHHH
Confidence 11110 00000 001111 111222222 46789999999988888877766667889999999866543
No 153
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=95.84 E-value=0.12 Score=57.69 Aligned_cols=87 Identities=10% Similarity=0.054 Sum_probs=50.9
Q ss_pred cCCeeEEEecCCch--hHHHHHhhhc---CCCcEEEEEccch-hhhhh----ccccee-cCChhhHHHHHHHHhhhcccc
Q 002559 274 GKSILILLDDVWEQ--DIVERFAKLY---DNDCKYLVTTRNE-AVYEI----TEAEKV-ELSKDDIMEISKSILLYHSLL 342 (908)
Q Consensus 274 ~kr~LLVLDDV~~~--~~~e~l~~~~---~~gsrILVTTR~~-~va~~----~~~~~~-~L~~~ea~~Lf~~~~~~~~~~ 342 (908)
+++-++|+|+++.. ..-+.+++.+ ++++.+|++|.+. .+... |..... +++.+++.+.+.+. +.
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~----~~- 186 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQ----GV- 186 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHc----CC-
Confidence 45678999999855 4455565444 4567777666654 34332 222222 46666666544321 11
Q ss_pred cCcchHHHHHHHHhHhCCchhhHhHhh
Q 002559 343 AEEELPAAAESLLERCGHHPLTVAVMG 369 (908)
Q Consensus 343 ~~~~l~~i~~~Iv~~cgGLPLAI~~ig 369 (908)
+ .+.+..++..++|.|+......
T Consensus 187 -~---~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 187 -S---ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred -C---hHHHHHHHHHcCCCHHHHHHHh
Confidence 1 2346678999999998665433
No 154
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=95.76 E-value=0.19 Score=56.55 Aligned_cols=42 Identities=21% Similarity=0.257 Sum_probs=32.4
Q ss_pred CccHHHHHHHHHhccCCceEEEEEecCCCChHHHHHHHHhCC
Q 002559 163 ISSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDP 204 (908)
Q Consensus 163 ~e~~~~~l~~LL~~~~~~~vV~I~GmgGiGKTtLA~~v~~~~ 204 (908)
.+.-.+.+...+..+.-.+...++|+.|+||||+|..+++..
T Consensus 11 q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l 52 (329)
T PRK08058 11 QPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSL 52 (329)
T ss_pred HHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 344556667767655447788999999999999999998754
No 155
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.73 E-value=0.051 Score=57.84 Aligned_cols=47 Identities=26% Similarity=0.201 Sum_probs=31.8
Q ss_pred HHHHHHhcc-CCceEEEEEecCCCChHHHHHHHHhC-CCCccccceEEEee
Q 002559 169 FLRKLLEQE-ETHQVILIVGLSGIGKSCLARQVASD-PPERFVGGAVELGF 217 (908)
Q Consensus 169 ~l~~LL~~~-~~~~vV~I~GmgGiGKTtLA~~v~~~-~~~~F~~~~f~~~v 217 (908)
-+..+|..+ +.-.++.|+|.+|+|||+||.++... .+. ...++|+++
T Consensus 13 ~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~--g~~~~y~~~ 61 (234)
T PRK06067 13 ELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQ--GKKVYVITT 61 (234)
T ss_pred HHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHhC--CCEEEEEEc
Confidence 345555443 33679999999999999999998654 332 234666554
No 156
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=95.72 E-value=0.17 Score=54.26 Aligned_cols=135 Identities=18% Similarity=0.154 Sum_probs=71.8
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCCCCccccceEEEe----------eeeeec----cccccCCcchHHHHH--------
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELG----------FGQWCS----RAACNGSKSDYQKRL-------- 237 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~~~~F~~~~f~~~----------v~~wv~----~~~~~~s~~~~~~~l-------- 237 (908)
-.+++|+|+.|.|||||.+.+.--++..- +.+.... -..|++ .++..+........+
T Consensus 30 G~~~~iiGPNGaGKSTLlK~iLGll~p~~-G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~ 108 (254)
T COG1121 30 GEITALIGPNGAGKSTLLKAILGLLKPSS-GEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGW 108 (254)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCcCCc-ceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccc
Confidence 37999999999999999999987443110 0000000 001111 111110000000000
Q ss_pred --------HHHHHHHHHHhccccccCCC---CCCHHHHHHHHHHHhccCCeeEEEecCCch------hH-HHHHhhhcCC
Q 002559 238 --------ARKISKFLVQIGFWKKIKDE---NSDLEYLCCLLQEALYGKSILILLDDVWEQ------DI-VERFAKLYDN 299 (908)
Q Consensus 238 --------~~~i~~~L~~lg~~~~~~~~---~~~~~~l~~~l~~~L~~kr~LLVLDDV~~~------~~-~e~l~~~~~~ 299 (908)
.+.+.+.|...|..+-.... -+.-+...-.+.+.|..++=|++||.--.. .. .+.|..+-..
T Consensus 109 ~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e 188 (254)
T COG1121 109 FRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE 188 (254)
T ss_pred cccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC
Confidence 14445556666643222222 223344455677889999999999986422 12 2333333345
Q ss_pred CcEEEEEccchhhhhh
Q 002559 300 DCKYLVTTRNEAVYEI 315 (908)
Q Consensus 300 gsrILVTTR~~~va~~ 315 (908)
|+.||++|.+-+....
T Consensus 189 g~tIl~vtHDL~~v~~ 204 (254)
T COG1121 189 GKTVLMVTHDLGLVMA 204 (254)
T ss_pred CCEEEEEeCCcHHhHh
Confidence 9999999999865543
No 157
>PRK05541 adenylylsulfate kinase; Provisional
Probab=95.71 E-value=0.028 Score=56.97 Aligned_cols=31 Identities=29% Similarity=0.471 Sum_probs=26.5
Q ss_pred CceEEEEEecCCCChHHHHHHHHhCCCCccc
Q 002559 179 THQVILIVGLSGIGKSCLARQVASDPPERFV 209 (908)
Q Consensus 179 ~~~vV~I~GmgGiGKTtLA~~v~~~~~~~F~ 209 (908)
...+|.+.|++|+||||+|+.+++....++.
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~ 36 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKLKYS 36 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHcCC
Confidence 4579999999999999999999988765554
No 158
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=95.68 E-value=0.025 Score=61.41 Aligned_cols=39 Identities=26% Similarity=0.345 Sum_probs=32.2
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCCCCccccceEEEeee
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFG 218 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~~~~F~~~~f~~~v~ 218 (908)
-.-++|.|.+|+|||||++.+++..+.+|.+.+|+.-++
T Consensus 69 GQr~~If~~~G~GKTtLa~~i~~~i~~~~~~~~V~~~iG 107 (274)
T cd01133 69 GGKIGLFGGAGVGKTVLIMELINNIAKAHGGYSVFAGVG 107 (274)
T ss_pred CCEEEEecCCCCChhHHHHHHHHHHHhcCCCEEEEEEec
Confidence 356889999999999999999999887787767665443
No 159
>PRK07952 DNA replication protein DnaC; Validated
Probab=95.68 E-value=0.025 Score=60.71 Aligned_cols=27 Identities=22% Similarity=0.324 Sum_probs=23.4
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCCCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDPPE 206 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~~~ 206 (908)
...+.++|.+|+|||+||.++++....
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l~~ 125 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNELLL 125 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHh
Confidence 457889999999999999999987653
No 160
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=95.67 E-value=0.021 Score=59.60 Aligned_cols=37 Identities=19% Similarity=0.227 Sum_probs=28.8
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCCCCccccceEEEee
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGF 217 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~~~~F~~~~f~~~v 217 (908)
-.++.|+|.+|+|||++|.+++...... ...++|++.
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~~~~~-g~~v~yi~~ 48 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVNAARQ-GKKVVYIDT 48 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhC-CCeEEEEEC
Confidence 6899999999999999999988665333 245677665
No 161
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.66 E-value=0.14 Score=52.21 Aligned_cols=126 Identities=19% Similarity=0.201 Sum_probs=62.9
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCCCCccccceEEEeeeeeeccccccCCcchHHHHHHHHHHHHHHHhcccc---ccCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACNGSKSDYQKRLARKISKFLVQIGFWK---KIKD 256 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~~~~F~~~~f~~~v~~wv~~~~~~~s~~~~~~~l~~~i~~~L~~lg~~~---~~~~ 256 (908)
-.+++|.|..|.|||||.+.++-.... . .+.++++=... .. . ........+ .-+.+.+...|... ....
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~~~~-~-~G~v~~~g~~~-~~---~-~~~~~~~~i-~~~~q~l~~~gl~~~~~~~~~ 96 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGLLKP-S-SGEILLDGKDL-AS---L-SPKELARKI-AYVPQALELLGLAHLADRPFN 96 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC-C-CcEEEECCEEC-Cc---C-CHHHHHHHH-hHHHHHHHHcCCHhHhcCCcc
Confidence 468999999999999999999876542 2 23333221110 00 0 111111111 11111233333211 1111
Q ss_pred CCCCHHHHHHHHHHHhccCCeeEEEecCCch---hHHHHHh----hhcCC-CcEEEEEccchhhh
Q 002559 257 ENSDLEYLCCLLQEALYGKSILILLDDVWEQ---DIVERFA----KLYDN-DCKYLVTTRNEAVY 313 (908)
Q Consensus 257 ~~~~~~~l~~~l~~~L~~kr~LLVLDDV~~~---~~~e~l~----~~~~~-gsrILVTTR~~~va 313 (908)
..+.-+...-.+...+-..+-++++|+.... ...+.+. ..-.. |..||++|.+....
T Consensus 97 ~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 97 ELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 1222223333455566667789999998633 2222222 22233 67889999887543
No 162
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=95.63 E-value=0.51 Score=50.25 Aligned_cols=187 Identities=14% Similarity=0.140 Sum_probs=97.2
Q ss_pred CccHHHHHHHHHhcc-CCceEEEEEecCCCChHHHHHHHHhCCCCccccceEEEeeeeeeccccccCCcchHHHHHHHHH
Q 002559 163 ISSKSKFLRKLLEQE-ETHQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACNGSKSDYQKRLARKI 241 (908)
Q Consensus 163 ~e~~~~~l~~LL~~~-~~~~vV~I~GmgGiGKTtLA~~v~~~~~~~F~~~~f~~~v~~wv~~~~~~~s~~~~~~~l~~~i 241 (908)
..++.+.+..+-..- .+..++.++|.-|+|||.+.++......+.=-+ .+.++ ........+...+
T Consensus 33 ~a~h~e~l~~l~~~i~d~qg~~~vtGevGsGKTv~~Ral~~s~~~d~~~-~v~i~------------~~~~s~~~~~~ai 99 (269)
T COG3267 33 AADHNEALLMLHAAIADGQGILAVTGEVGSGKTVLRRALLASLNEDQVA-VVVID------------KPTLSDATLLEAI 99 (269)
T ss_pred hhhhhHHHHHHHHHHhcCCceEEEEecCCCchhHHHHHHHHhcCCCceE-EEEec------------CcchhHHHHHHHH
Confidence 334444454444332 235699999999999999999665544321101 11111 2222333444444
Q ss_pred HHHHHHhccccccCCCCCCHH----HHHHHHHHHh-ccCC-eeEEEecCCch--hHHHHHhh---hcCCCc---EEEEEc
Q 002559 242 SKFLVQIGFWKKIKDENSDLE----YLCCLLQEAL-YGKS-ILILLDDVWEQ--DIVERFAK---LYDNDC---KYLVTT 307 (908)
Q Consensus 242 ~~~L~~lg~~~~~~~~~~~~~----~l~~~l~~~L-~~kr-~LLVLDDV~~~--~~~e~l~~---~~~~gs---rILVTT 307 (908)
...+. . ....+.. ...+.+.... +++| ..+++|+..+. +..+.++- .-..++ +|+.--
T Consensus 100 ~~~l~-------~-~p~~~~~~~~e~~~~~L~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~G 171 (269)
T COG3267 100 VADLE-------S-QPKVNVNAVLEQIDRELAALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIG 171 (269)
T ss_pred HHHhc-------c-CccchhHHHHHHHHHHHHHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecC
Confidence 43332 1 1112333 2333333333 4577 89999998754 34444432 111222 233322
Q ss_pred cch--------hhh---hhccc-cee-cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhHhCCchhhHhHhhh
Q 002559 308 RNE--------AVY---EITEA-EKV-ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGHHPLTVAVMGK 370 (908)
Q Consensus 308 R~~--------~va---~~~~~-~~~-~L~~~ea~~Lf~~~~~~~~~~~~~~l~~i~~~Iv~~cgGLPLAI~~ig~ 370 (908)
.-+ ... ..+.. ... |++.++...+++..+.......+--..+....|.....|.|.+|..++.
T Consensus 172 qp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 172 QPKLRPRLRLPVLRELEQRIDIRIELPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred CcccchhhchHHHHhhhheEEEEEecCCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHH
Confidence 211 111 11122 112 8898888887777776553332222346678899999999999987764
No 163
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=95.63 E-value=0.038 Score=56.29 Aligned_cols=23 Identities=22% Similarity=0.466 Sum_probs=21.0
Q ss_pred EEEEEecCCCChHHHHHHHHhCC
Q 002559 182 VILIVGLSGIGKSCLARQVASDP 204 (908)
Q Consensus 182 vV~I~GmgGiGKTtLA~~v~~~~ 204 (908)
+|.|+|++|+||||+|+.++...
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 57899999999999999999865
No 164
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=95.63 E-value=0.042 Score=57.76 Aligned_cols=48 Identities=25% Similarity=0.250 Sum_probs=33.5
Q ss_pred HHHHHHhcc-CCceEEEEEecCCCChHHHHHHHHhCCCCccccceEEEee
Q 002559 169 FLRKLLEQE-ETHQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGF 217 (908)
Q Consensus 169 ~l~~LL~~~-~~~~vV~I~GmgGiGKTtLA~~v~~~~~~~F~~~~f~~~v 217 (908)
-++.+|..+ ..-.++.|+|.+|+||||+|.+++.....+ ...++|++.
T Consensus 7 ~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~-g~~v~yi~~ 55 (218)
T cd01394 7 GLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQ-GKKVAYIDT 55 (218)
T ss_pred HHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEEEC
Confidence 456666543 336799999999999999999998765432 234566553
No 165
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.63 E-value=0.088 Score=52.82 Aligned_cols=112 Identities=18% Similarity=0.143 Sum_probs=59.3
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCCCCccccceEEEeeeeeeccccccCCcchHHHHHHHHHHHHHHHhccccccCCCCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACNGSKSDYQKRLARKISKFLVQIGFWKKIKDENS 259 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~~~~F~~~~f~~~v~~wv~~~~~~~s~~~~~~~l~~~i~~~L~~lg~~~~~~~~~~ 259 (908)
-.+++|.|..|.|||||.+.++-.... . .+.++++-.. + .... .....+ ...+. ....+
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~~~~-~-~G~v~~~g~~-~-------~~~~-~~~~~~------~~i~~----~~qLS 84 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGLYKP-D-SGEILVDGKE-V-------SFAS-PRDARR------AGIAM----VYQLS 84 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC-C-CeEEEECCEE-C-------CcCC-HHHHHh------cCeEE----EEecC
Confidence 468999999999999999999876542 2 2333322110 0 1000 000000 01121 11122
Q ss_pred CHHHHHHHHHHHhccCCeeEEEecCCch---hHH----HHHhhhcCCCcEEEEEccchhh
Q 002559 260 DLEYLCCLLQEALYGKSILILLDDVWEQ---DIV----ERFAKLYDNDCKYLVTTRNEAV 312 (908)
Q Consensus 260 ~~~~l~~~l~~~L~~kr~LLVLDDV~~~---~~~----e~l~~~~~~gsrILVTTR~~~v 312 (908)
.-+...-.+...+-.++-++++|+.... ... +.+......|..||++|.+...
T Consensus 85 ~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~ 144 (163)
T cd03216 85 VGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDE 144 (163)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 2233334455566667788999998643 222 2333322347788889888753
No 166
>PRK08939 primosomal protein DnaI; Reviewed
Probab=95.62 E-value=0.025 Score=62.80 Aligned_cols=26 Identities=27% Similarity=0.396 Sum_probs=23.4
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
.+-+.|+|..|+|||.||.++++...
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~ 181 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELA 181 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 46788999999999999999999875
No 167
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=95.61 E-value=0.023 Score=57.62 Aligned_cols=23 Identities=35% Similarity=0.524 Sum_probs=20.9
Q ss_pred EEEEEecCCCChHHHHHHHHhCC
Q 002559 182 VILIVGLSGIGKSCLARQVASDP 204 (908)
Q Consensus 182 vV~I~GmgGiGKTtLA~~v~~~~ 204 (908)
++.|.|.+|+||||+|..++...
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~ 25 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQS 25 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHc
Confidence 68899999999999999998764
No 168
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.59 E-value=0.018 Score=62.48 Aligned_cols=26 Identities=31% Similarity=0.583 Sum_probs=24.1
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
.++|.++|++|.|||+|.+++++++.
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLS 202 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLS 202 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhhe
Confidence 58999999999999999999999864
No 169
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=95.58 E-value=0.45 Score=53.24 Aligned_cols=163 Identities=12% Similarity=0.133 Sum_probs=86.7
Q ss_pred HHHHHHHHhccCCceEEEEEecCCCChHHHHHHHHhCCC--C---ccccceEEEeeeeeeccccccCCcchHHHHHHHHH
Q 002559 167 SKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPP--E---RFVGGAVELGFGQWCSRAACNGSKSDYQKRLARKI 241 (908)
Q Consensus 167 ~~~l~~LL~~~~~~~vV~I~GmgGiGKTtLA~~v~~~~~--~---~F~~~~f~~~v~~wv~~~~~~~s~~~~~~~l~~~i 241 (908)
-+.+...+..+.-.....++|+.|+||+++|+.++...- . .-+|+. |. -
T Consensus 11 ~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~-------------C~-------------s 64 (325)
T PRK06871 11 YQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQ-------------CH-------------S 64 (325)
T ss_pred HHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCC-------------CH-------------H
Confidence 344555555554467888999999999999999987542 1 112211 10 0
Q ss_pred HHHHHHhcccc----cc-CCCCCCHHHHHHHHHHHh-----ccCCeeEEEecCCch--hHHHHHhhhc---CCCcEEEEE
Q 002559 242 SKFLVQIGFWK----KI-KDENSDLEYLCCLLQEAL-----YGKSILILLDDVWEQ--DIVERFAKLY---DNDCKYLVT 306 (908)
Q Consensus 242 ~~~L~~lg~~~----~~-~~~~~~~~~l~~~l~~~L-----~~kr~LLVLDDV~~~--~~~e~l~~~~---~~gsrILVT 306 (908)
++.+....+++ .. ......+++..+ +.+.+ .+++-++|+|+++.. ...+.+++.+ ++++.+|++
T Consensus 65 C~~~~~g~HPD~~~i~p~~~~~I~id~iR~-l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~ 143 (325)
T PRK06871 65 CHLFQAGNHPDFHILEPIDNKDIGVDQVRE-INEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQ 143 (325)
T ss_pred HHHHhcCCCCCEEEEccccCCCCCHHHHHH-HHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEE
Confidence 00000000000 00 001113444333 22222 355668889999855 4566666544 456666666
Q ss_pred ccch-hhhhh----ccccee-cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhHhCCchhh
Q 002559 307 TRNE-AVYEI----TEAEKV-ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGHHPLT 364 (908)
Q Consensus 307 TR~~-~va~~----~~~~~~-~L~~~ea~~Lf~~~~~~~~~~~~~~l~~i~~~Iv~~cgGLPLA 364 (908)
|.+. .+... +..... +++.++..+.+.+... .+ ...+...+..++|.|+.
T Consensus 144 t~~~~~llpTI~SRC~~~~~~~~~~~~~~~~L~~~~~------~~--~~~~~~~~~l~~g~p~~ 199 (325)
T PRK06871 144 ADLSAALLPTIYSRCQTWLIHPPEEQQALDWLQAQSS------AE--ISEILTALRINYGRPLL 199 (325)
T ss_pred ECChHhCchHHHhhceEEeCCCCCHHHHHHHHHHHhc------cC--hHHHHHHHHHcCCCHHH
Confidence 6654 44432 222333 6788887766554321 11 12356778899999963
No 170
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=95.57 E-value=0.02 Score=65.99 Aligned_cols=42 Identities=24% Similarity=0.287 Sum_probs=30.1
Q ss_pred cCccHHHHHHHHHhccCCceEEEEEecCCCChHHHHHHHHhCCCC
Q 002559 162 PISSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPPE 206 (908)
Q Consensus 162 g~e~~~~~l~~LL~~~~~~~vV~I~GmgGiGKTtLA~~v~~~~~~ 206 (908)
..++..+.+...+.. .+.|.++|++|+|||++|+.+++....
T Consensus 179 i~e~~le~l~~~L~~---~~~iil~GppGtGKT~lA~~la~~l~~ 220 (459)
T PRK11331 179 IPETTIETILKRLTI---KKNIILQGPPGVGKTFVARRLAYLLTG 220 (459)
T ss_pred CCHHHHHHHHHHHhc---CCCEEEECCCCCCHHHHHHHHHHHhcC
Confidence 344444555444443 357788999999999999999987753
No 171
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.56 E-value=0.079 Score=56.65 Aligned_cols=48 Identities=19% Similarity=0.259 Sum_probs=32.1
Q ss_pred HHHHHHhcc-CCceEEEEEecCCCChHHHHHHHHhCCCCccccceEEEee
Q 002559 169 FLRKLLEQE-ETHQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGF 217 (908)
Q Consensus 169 ~l~~LL~~~-~~~~vV~I~GmgGiGKTtLA~~v~~~~~~~F~~~~f~~~v 217 (908)
-+..+|..+ ..-.++.|.|.+|+|||++|.++......+ ...++|+.+
T Consensus 9 ~LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~-ge~~lyvs~ 57 (237)
T TIGR03877 9 GMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQM-GEPGIYVAL 57 (237)
T ss_pred hHHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHc-CCcEEEEEe
Confidence 345566543 336899999999999999999876543211 234666554
No 172
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.55 E-value=0.037 Score=64.65 Aligned_cols=92 Identities=16% Similarity=0.190 Sum_probs=59.3
Q ss_pred CCCcCccHHHHHHHHHhcc-----------CCceEEEEEecCCCChHHHHHHHHhCCCCccccceEEEeeeeeecccccc
Q 002559 159 QGYPISSKSKFLRKLLEQE-----------ETHQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACN 227 (908)
Q Consensus 159 ~~~g~e~~~~~l~~LL~~~-----------~~~~vV~I~GmgGiGKTtLA~~v~~~~~~~F~~~~f~~~v~~wv~~~~~~ 227 (908)
..-|.+...+++.+++..- ..++=|.+||++|+|||.||+++++....-|- -+++
T Consensus 191 diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~----------~isA---- 256 (802)
T KOG0733|consen 191 DIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFL----------SISA---- 256 (802)
T ss_pred hccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceE----------eecc----
Confidence 3347777777776665321 12567889999999999999999998876553 1111
Q ss_pred CCcchHHHHHHHHHHHHHHHhccccccCCCCCCHHHHHHHHHHHhccCCeeEEEecCCc
Q 002559 228 GSKSDYQKRLARKISKFLVQIGFWKKIKDENSDLEYLCCLLQEALYGKSILILLDDVWE 286 (908)
Q Consensus 228 ~s~~~~~~~l~~~i~~~L~~lg~~~~~~~~~~~~~~l~~~l~~~L~~kr~LLVLDDV~~ 286 (908)
+ +|... ....+.+.+.+.+.+.-..-++++++|+++-
T Consensus 257 ---p----eivSG---------------vSGESEkkiRelF~~A~~~aPcivFiDeIDA 293 (802)
T KOG0733|consen 257 ---P----EIVSG---------------VSGESEKKIRELFDQAKSNAPCIVFIDEIDA 293 (802)
T ss_pred ---h----hhhcc---------------cCcccHHHHHHHHHHHhccCCeEEEeecccc
Confidence 1 11111 1112445555566666667899999999973
No 173
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=95.52 E-value=0.21 Score=52.12 Aligned_cols=56 Identities=16% Similarity=0.185 Sum_probs=38.7
Q ss_pred cCCCcCccHHHHHHHHHhccCCceEEEEEecCCCChHHHHHHHHhCCC-CccccceEE
Q 002559 158 EQGYPISSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPP-ERFVGGAVE 214 (908)
Q Consensus 158 ~~~~g~e~~~~~l~~LL~~~~~~~vV~I~GmgGiGKTtLA~~v~~~~~-~~F~~~~f~ 214 (908)
...+|-++-++.+.-+-. +++.+-+.|.||+|+||||=+..+++.+- ..|..+++.
T Consensus 27 ~dIVGNe~tv~rl~via~-~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLE 83 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAK-EGNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLE 83 (333)
T ss_pred HHhhCCHHHHHHHHHHHH-cCCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhh
Confidence 345677776666655444 45677888999999999998888887654 335444433
No 174
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=95.52 E-value=0.16 Score=63.36 Aligned_cols=29 Identities=34% Similarity=0.605 Sum_probs=24.5
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCCCCcc
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDPPERF 208 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~~~~F 208 (908)
++-|.++|++|+|||+||+++++.....|
T Consensus 487 ~~giLL~GppGtGKT~lakalA~e~~~~f 515 (733)
T TIGR01243 487 PKGVLLFGPPGTGKTLLAKAVATESGANF 515 (733)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhcCCCE
Confidence 55688999999999999999999865443
No 175
>PRK08233 hypothetical protein; Provisional
Probab=95.49 E-value=0.053 Score=54.96 Aligned_cols=26 Identities=27% Similarity=0.447 Sum_probs=23.3
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
..+|+|.|.+|+||||||..++....
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 46899999999999999999998764
No 176
>PRK04296 thymidine kinase; Provisional
Probab=95.43 E-value=0.026 Score=58.19 Aligned_cols=113 Identities=18% Similarity=0.097 Sum_probs=61.1
Q ss_pred eEEEEEecCCCChHHHHHHHHhCCCCccccceEEEeeeeeeccccccCCcchHHHHHHHHHHHHHHHhccccccCCCCCC
Q 002559 181 QVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACNGSKSDYQKRLARKISKFLVQIGFWKKIKDENSD 260 (908)
Q Consensus 181 ~vV~I~GmgGiGKTtLA~~v~~~~~~~F~~~~f~~~v~~wv~~~~~~~s~~~~~~~l~~~i~~~L~~lg~~~~~~~~~~~ 260 (908)
.++.|+|..|.||||+|..++.+...+.. .++++.-. . ........+... +|.. -.......
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~-~v~i~k~~--~-------d~~~~~~~i~~~-------lg~~-~~~~~~~~ 64 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGM-KVLVFKPA--I-------DDRYGEGKVVSR-------IGLS-REAIPVSS 64 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCC-eEEEEecc--c-------cccccCCcEecC-------CCCc-ccceEeCC
Confidence 47789999999999999999887643321 22222100 0 000001111111 1210 00001123
Q ss_pred HHHHHHHHHHHhccCCeeEEEecCCc--hhHHHHHhhh-cCCCcEEEEEccchhh
Q 002559 261 LEYLCCLLQEALYGKSILILLDDVWE--QDIVERFAKL-YDNDCKYLVTTRNEAV 312 (908)
Q Consensus 261 ~~~l~~~l~~~L~~kr~LLVLDDV~~--~~~~e~l~~~-~~~gsrILVTTR~~~v 312 (908)
.+++...+.+ ..++.-+||+|.+.- .+++..+... -+.|..||+|.++.+.
T Consensus 65 ~~~~~~~~~~-~~~~~dvviIDEaq~l~~~~v~~l~~~l~~~g~~vi~tgl~~~~ 118 (190)
T PRK04296 65 DTDIFELIEE-EGEKIDCVLIDEAQFLDKEQVVQLAEVLDDLGIPVICYGLDTDF 118 (190)
T ss_pred hHHHHHHHHh-hCCCCCEEEEEccccCCHHHHHHHHHHHHHcCCeEEEEecCccc
Confidence 4455555555 334556899999964 3445445444 4678899999988653
No 177
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.42 E-value=0.047 Score=55.56 Aligned_cols=35 Identities=23% Similarity=0.217 Sum_probs=24.5
Q ss_pred EEEEEecCCCChHHHHHHHHhCCCCccccceEEEee
Q 002559 182 VILIVGLSGIGKSCLARQVASDPPERFVGGAVELGF 217 (908)
Q Consensus 182 vV~I~GmgGiGKTtLA~~v~~~~~~~F~~~~f~~~v 217 (908)
++.|.|.+|+|||+||.+++.....+ ...++|+++
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~-g~~v~~~s~ 35 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLAR-GEPGLYVTL 35 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHC-CCcEEEEEC
Confidence 36799999999999999987654321 234555544
No 178
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=95.42 E-value=0.022 Score=60.24 Aligned_cols=123 Identities=23% Similarity=0.316 Sum_probs=68.1
Q ss_pred HHHHHhcc-CCceEEEEEecCCCChHHHHHHHHhCCCCccccceEEEeeeeeeccccccCCcchHHHHHHHHHHHHHHHh
Q 002559 170 LRKLLEQE-ETHQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACNGSKSDYQKRLARKISKFLVQI 248 (908)
Q Consensus 170 l~~LL~~~-~~~~vV~I~GmgGiGKTtLA~~v~~~~~~~F~~~~f~~~v~~wv~~~~~~~s~~~~~~~l~~~i~~~L~~l 248 (908)
+..+|..+ +.-.++.|.|.+|+|||+||.+++.....++...++|+.+.. ...++.+.+ ...
T Consensus 8 LD~~l~GGip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee-------------~~~~l~~~~----~s~ 70 (226)
T PF06745_consen 8 LDELLGGGIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEE-------------PPEELIENM----KSF 70 (226)
T ss_dssp HHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS--------------HHHHHHHH----HTT
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecC-------------CHHHHHHHH----HHc
Confidence 44555332 236799999999999999999987554333234566655421 112222222 222
Q ss_pred cc-------------ccccCCC----CCCHHHHHHHHHHHhcc-CCeeEEEecCCch------hHH----HHHhhhc-CC
Q 002559 249 GF-------------WKKIKDE----NSDLEYLCCLLQEALYG-KSILILLDDVWEQ------DIV----ERFAKLY-DN 299 (908)
Q Consensus 249 g~-------------~~~~~~~----~~~~~~l~~~l~~~L~~-kr~LLVLDDV~~~------~~~----e~l~~~~-~~ 299 (908)
|. ....... ..+.+.+...+.+.++. +...+|+|.+... ... ..+...+ ..
T Consensus 71 g~d~~~~~~~g~l~~~d~~~~~~~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls~l~~~~~~~~~r~~l~~l~~~l~~~ 150 (226)
T PF06745_consen 71 GWDLEEYEDSGKLKIIDAFPERIGWSPNDLEELLSKIREAIEELKPDRVVIDSLSALLLYDDPEELRRFLRALIKFLKSR 150 (226)
T ss_dssp TS-HHHHHHTTSEEEEESSGGGST-TSCCHHHHHHHHHHHHHHHTSSEEEEETHHHHTTSSSGGGHHHHHHHHHHHHHHT
T ss_pred CCcHHHHhhcCCEEEEecccccccccccCHHHHHHHHHHHHHhcCCCEEEEECHHHHhhcCCHHHHHHHHHHHHHHHHHC
Confidence 21 0000110 34777888888887765 5589999997433 222 2222222 35
Q ss_pred CcEEEEEccc
Q 002559 300 DCKYLVTTRN 309 (908)
Q Consensus 300 gsrILVTTR~ 309 (908)
|+.+|+|+..
T Consensus 151 ~~t~llt~~~ 160 (226)
T PF06745_consen 151 GVTTLLTSEM 160 (226)
T ss_dssp TEEEEEEEEE
T ss_pred CCEEEEEEcc
Confidence 7777777763
No 179
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=95.41 E-value=0.12 Score=51.83 Aligned_cols=41 Identities=27% Similarity=0.360 Sum_probs=30.7
Q ss_pred ccHHHHHHHHHhccCCceEEEEEecCCCChHHHHHHHHhCC
Q 002559 164 SSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDP 204 (908)
Q Consensus 164 e~~~~~l~~LL~~~~~~~vV~I~GmgGiGKTtLA~~v~~~~ 204 (908)
+.-.+.+..++..+.-+..+.++|..|+||+++|..+++.+
T Consensus 3 ~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~l 43 (162)
T PF13177_consen 3 EEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARAL 43 (162)
T ss_dssp HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHH
Confidence 34456666666665446788999999999999999998754
No 180
>PRK04132 replication factor C small subunit; Provisional
Probab=95.38 E-value=0.23 Score=61.97 Aligned_cols=88 Identities=13% Similarity=0.150 Sum_probs=53.7
Q ss_pred CCeeEEEecCCch--hHHHHHhhhc---CCCcEEEEEccch-hhhh----hccccee-cCChhhHHHHHHHHhhhccccc
Q 002559 275 KSILILLDDVWEQ--DIVERFAKLY---DNDCKYLVTTRNE-AVYE----ITEAEKV-ELSKDDIMEISKSILLYHSLLA 343 (908)
Q Consensus 275 kr~LLVLDDV~~~--~~~e~l~~~~---~~gsrILVTTR~~-~va~----~~~~~~~-~L~~~ea~~Lf~~~~~~~~~~~ 343 (908)
+.-++|+|+++.. ...+.|...+ +..+++|++|-+. .+.. .|..... +++.++-.+.+..++...+...
T Consensus 630 ~~KVvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i 709 (846)
T PRK04132 630 SFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLEL 709 (846)
T ss_pred CCEEEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCCC
Confidence 4579999999865 4666666544 4567766665554 3332 2222222 6777777766666654333221
Q ss_pred CcchHHHHHHHHhHhCCchhhH
Q 002559 344 EEELPAAAESLLERCGHHPLTV 365 (908)
Q Consensus 344 ~~~l~~i~~~Iv~~cgGLPLAI 365 (908)
.++....|++.|+|.+-..
T Consensus 710 ---~~e~L~~Ia~~s~GDlR~A 728 (846)
T PRK04132 710 ---TEEGLQAILYIAEGDMRRA 728 (846)
T ss_pred ---CHHHHHHHHHHcCCCHHHH
Confidence 2367789999999977433
No 181
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=95.38 E-value=0.42 Score=64.33 Aligned_cols=238 Identities=19% Similarity=0.163 Sum_probs=159.3
Q ss_pred cCchhHHHhhhcCCCCCCccccHHHHHhhhhhcCChhhHHHHhhhccHHHHHhhcCcchhhhhHHHHHHHHHHHhhcchH
Q 002559 622 TGAVDKLAGLLQKSEDPMIQTDILTVLTKLAEFGTPETVDKVLQSIPFDKLATLLSYDAKEWHENMFTILMSLAKVGKSK 701 (908)
Q Consensus 622 ~g~~~kL~~l~~~~~~~~t~~~~~~~l~~l~e~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~ 701 (908)
.|.+-.|..++.. +++..-.+....+..++..- +...++...=...-+.++|+..+.+..+.-..++..++..+--+
T Consensus 57 aGaIP~LV~lL~s-g~~~vk~nAaaaL~nLS~~e--~nk~~Iv~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D 133 (2102)
T PLN03200 57 SQAMPLLVSLLRS-GTLGAKVNAAAVLGVLCKEE--DLRVKVLLGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSD 133 (2102)
T ss_pred cCcHHHHHHHHcC-CCHHHHHHHHHHHHHHhcCH--HHHHHHHHcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchh
Confidence 5666667777643 34544455555555554332 23334444333344677888878888888888888888776223
Q ss_pred HH--HHHHHhhhhHHHHHHhhcch---hHHHHHHHHHHHHHHHhcCCCcccccCCCcccccccccccccceeEeecCCCC
Q 002559 702 AV--EKMFAFEIDKNLIKLLENGS---EVVQHHAIVTLKAFYELAGSPANASLRPANLNLLPWQVRLRLERFIISDRTVP 776 (908)
Q Consensus 702 ~~--~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 776 (908)
.+ .-+...|+=..|..++.+|+ ...|-+++.+|.+.+-..++..+..+. ...
T Consensus 134 ~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~AL~nLs~~~en~~~~IIe----------------------aGa- 190 (2102)
T PLN03200 134 HVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGALRNLCGSTDGFWSATLE----------------------AGG- 190 (2102)
T ss_pred hhhhhhhhhcCChHHHHHHHhCCchhhHHHHHHHHHHHHHHhcCccchHHHHHH----------------------cCC-
Confidence 33 33445788888999999994 345566777777776554422222222 222
Q ss_pred CCCCcccHHHHHHHHhCCCchhHHHHhhhhhHHHHhhcchhhHHHHhccchHHHHHHHhhccCCCCcccchhhHHHHHHh
Q 002559 777 PSPKSQTFEDVIHRLLDGDNKQVQGATQDLIPFLEKAGELKIRDMIIKSPLIAKLSELLQYAHPEQNSVRSESAFLLTKL 856 (908)
Q Consensus 777 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 856 (908)
...++.-|.++|...+.+|.+-|.-++.. ++..++.++....+..|-.+|.+. ....+|.++|++|..+
T Consensus 191 -------Vp~LV~LLsS~d~~lQ~eAa~aLa~Lass--~ee~~~aVIeaGaVP~LV~LL~sg--~~~~VRE~AA~AL~nL 259 (2102)
T PLN03200 191 -------VDILVKLLSSGNSDAQANAASLLARLMMA--FESSISKVLDAGAVKQLLKLLGQG--NEVSVRAEAAGALEAL 259 (2102)
T ss_pred -------HHHHHHHHcCCCHHHHHHHHHHHHHHHcC--ChHHHHHHHHCCCHHHHHHHHccC--CChHHHHHHHHHHHHH
Confidence 45566777777777777777666555433 344688888999999999999542 2237899999999999
Q ss_pred hhcCCchHHHHHhhcCChHHHHHhhccCcc---------hhhhhcchhhH
Q 002559 857 ACAGGEPCIKKFLEYDIIPELVKMMQCCVP---------EIQDSAYAAPD 897 (908)
Q Consensus 857 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~ 897 (908)
+ .|+..+-+..+++|.||-||..+++... .+|+.|-.||.
T Consensus 260 A-s~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALs 308 (2102)
T PLN03200 260 S-SQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALA 308 (2102)
T ss_pred h-cCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHH
Confidence 8 7888899999999999999999886442 35776666654
No 182
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=95.37 E-value=0.069 Score=56.68 Aligned_cols=49 Identities=33% Similarity=0.325 Sum_probs=33.5
Q ss_pred HHHHHHhcc-CCceEEEEEecCCCChHHHHHHHHhCCC--Ccc---ccceEEEee
Q 002559 169 FLRKLLEQE-ETHQVILIVGLSGIGKSCLARQVASDPP--ERF---VGGAVELGF 217 (908)
Q Consensus 169 ~l~~LL~~~-~~~~vV~I~GmgGiGKTtLA~~v~~~~~--~~F---~~~~f~~~v 217 (908)
.++++|... ..-.++.|+|.+|+|||+||.+++.... ..+ ..+++|++.
T Consensus 7 ~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~ 61 (235)
T cd01123 7 ALDELLGGGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDT 61 (235)
T ss_pred hhHhhccCCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeC
Confidence 345555543 2367999999999999999999975432 111 356777665
No 183
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.36 E-value=0.12 Score=59.71 Aligned_cols=29 Identities=31% Similarity=0.476 Sum_probs=24.1
Q ss_pred CceEEEEEecCCCChHHHHHHHHhCCCCccc
Q 002559 179 THQVILIVGLSGIGKSCLARQVASDPPERFV 209 (908)
Q Consensus 179 ~~~vV~I~GmgGiGKTtLA~~v~~~~~~~F~ 209 (908)
+...+.+.|++|+|||+||..++.. ..|+
T Consensus 537 ~lvSvLl~Gp~~sGKTaLAA~iA~~--S~FP 565 (744)
T KOG0741|consen 537 PLVSVLLEGPPGSGKTALAAKIALS--SDFP 565 (744)
T ss_pred cceEEEEecCCCCChHHHHHHHHhh--cCCC
Confidence 3677889999999999999999864 3466
No 184
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=95.34 E-value=0.16 Score=55.80 Aligned_cols=140 Identities=21% Similarity=0.172 Sum_probs=79.7
Q ss_pred cCCCcCccHHHHHHHHHhcc---CCceEEEEEecCCCChHHHHHHHHhCCCCccccceEEEeeeeeeccccccCCcchHH
Q 002559 158 EQGYPISSKSKFLRKLLEQE---ETHQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACNGSKSDYQ 234 (908)
Q Consensus 158 ~~~~g~e~~~~~l~~LL~~~---~~~~vV~I~GmgGiGKTtLA~~v~~~~~~~F~~~~f~~~v~~wv~~~~~~~s~~~~~ 234 (908)
.+.+|..+..+.+..++... ++...|.|+|+.|.|||+|......+ ...|....+-+.+.+.+. ...-..
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~-~q~~~E~~l~v~Lng~~~------~dk~al 96 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSD-IQENGENFLLVRLNGELQ------TDKIAL 96 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhh-HHhcCCeEEEEEECccch------hhHHHH
Confidence 35567778888888887652 33567789999999999987777666 334544555555544321 212234
Q ss_pred HHHHHHHHHHHHHhccccccCCCCCCHHHHHHHHHHHhcc------CCeeEEEecCCch----hH---HHHH---hhhcC
Q 002559 235 KRLARKISKFLVQIGFWKKIKDENSDLEYLCCLLQEALYG------KSILILLDDVWEQ----DI---VERF---AKLYD 298 (908)
Q Consensus 235 ~~l~~~i~~~L~~lg~~~~~~~~~~~~~~l~~~l~~~L~~------kr~LLVLDDV~~~----~~---~e~l---~~~~~ 298 (908)
+.|.+++...+...+. ...+..+-..++-..|+. -++..|+|..+-- .+ .+.+ ...-.
T Consensus 97 ~~I~rql~~e~~~~~k------~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~ 170 (408)
T KOG2228|consen 97 KGITRQLALELNRIVK------SFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARA 170 (408)
T ss_pred HHHHHHHHHHHhhhhe------eecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCC
Confidence 5566666555444321 122333333444444432 3588888887632 11 1111 11224
Q ss_pred CCcEEEEEccch
Q 002559 299 NDCKYLVTTRNE 310 (908)
Q Consensus 299 ~gsrILVTTR~~ 310 (908)
|-|-|-+|||-.
T Consensus 171 Piciig~Ttrld 182 (408)
T KOG2228|consen 171 PICIIGVTTRLD 182 (408)
T ss_pred CeEEEEeecccc
Confidence 567788999875
No 185
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=95.34 E-value=0.053 Score=67.26 Aligned_cols=26 Identities=23% Similarity=0.358 Sum_probs=23.1
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
...+.++|++|+|||+||+.++....
T Consensus 488 ~~~~Lf~GP~GvGKT~lAk~LA~~l~ 513 (758)
T PRK11034 488 VGSFLFAGPTGVGKTEVTVQLSKALG 513 (758)
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhC
Confidence 45788999999999999999998774
No 186
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=95.32 E-value=0.13 Score=54.34 Aligned_cols=138 Identities=23% Similarity=0.227 Sum_probs=72.4
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCCCCc-----cccc---------eEEEeeeeeecccccc-CCc----chHH------
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDPPER-----FVGG---------AVELGFGQWCSRAACN-GSK----SDYQ------ 234 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~~~~-----F~~~---------~f~~~v~~wv~~~~~~-~s~----~~~~------ 234 (908)
-.+++|+|.+|+|||||++.++--.+.. |++. .++=.+ +-|+.+... .+. ....
T Consensus 33 Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~V-QmVFQDp~~SLnP~~tv~~~l~Epl~~ 111 (252)
T COG1124 33 GETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPV-QMVFQDPYSSLNPRRTVGRILSEPLRP 111 (252)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccce-eEEecCCccccCcchhHHHHHhhhhcc
Confidence 4689999999999999999997433211 1110 000000 011110000 000 0111
Q ss_pred ---HHHHHHHHHHHHHhccccccC----CCCCCHHHHHHHHHHHhccCCeeEEEecCCch-------hHHHHHhhhc-CC
Q 002559 235 ---KRLARKISKFLVQIGFWKKIK----DENSDLEYLCCLLQEALYGKSILILLDDVWEQ-------DIVERFAKLY-DN 299 (908)
Q Consensus 235 ---~~l~~~i~~~L~~lg~~~~~~----~~~~~~~~l~~~l~~~L~~kr~LLVLDDV~~~-------~~~e~l~~~~-~~ 299 (908)
.+..+.+.+.|.+.|.....- .+.+.-+...-.|.+.|.-++=+||+|..-+. +.|+.+...- ..
T Consensus 112 ~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~ 191 (252)
T COG1124 112 HGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKER 191 (252)
T ss_pred CCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhc
Confidence 122233566677766543221 12222333334566777888889999998644 2355444322 23
Q ss_pred CcEEEEEccchhhhhhccc
Q 002559 300 DCKYLVTTRNEAVYEITEA 318 (908)
Q Consensus 300 gsrILVTTR~~~va~~~~~ 318 (908)
+-.+|+-|.+..+...++.
T Consensus 192 ~lt~l~IsHdl~~v~~~cd 210 (252)
T COG1124 192 GLTYLFISHDLALVEHMCD 210 (252)
T ss_pred CceEEEEeCcHHHHHHHhh
Confidence 5678899999877665543
No 187
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=95.31 E-value=0.037 Score=62.61 Aligned_cols=119 Identities=20% Similarity=0.270 Sum_probs=68.2
Q ss_pred HHHHHHhccCCceEEEEEecCCCChHHHHHHHHhCCCCccccceEEEeeeeeeccccccCCcchHHHHHHHHHHHHHHHh
Q 002559 169 FLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACNGSKSDYQKRLARKISKFLVQI 248 (908)
Q Consensus 169 ~l~~LL~~~~~~~vV~I~GmgGiGKTtLA~~v~~~~~~~F~~~~f~~~v~~wv~~~~~~~s~~~~~~~l~~~i~~~L~~l 248 (908)
.+..++... ...|.|.|+.|+||||+...+.+.........++.+. ...+....-...+ .
T Consensus 113 ~l~~~~~~~--~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiE------------dp~E~~~~~~~~~---i--- 172 (343)
T TIGR01420 113 VLRELAERP--RGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIE------------DPIEYVHRNKRSL---I--- 172 (343)
T ss_pred HHHHHHhhc--CcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEc------------CChhhhccCccce---E---
Confidence 455555432 4689999999999999999988766543333332110 1111000000000 0
Q ss_pred ccccccCCCCCCHHHHHHHHHHHhccCCeeEEEecCCchhHHHHHhhhcCCCcEEEEEccchh
Q 002559 249 GFWKKIKDENSDLEYLCCLLQEALYGKSILILLDDVWEQDIVERFAKLYDNDCKYLVTTRNEA 311 (908)
Q Consensus 249 g~~~~~~~~~~~~~~l~~~l~~~L~~kr~LLVLDDV~~~~~~e~l~~~~~~gsrILVTTR~~~ 311 (908)
...+...+.......++..|...+=.|++|.+.+.+.+.........|..|+.|+...+
T Consensus 173 ----~q~evg~~~~~~~~~l~~~lr~~pd~i~vgEird~~~~~~~l~aa~tGh~v~~T~Ha~~ 231 (343)
T TIGR01420 173 ----NQREVGLDTLSFANALRAALREDPDVILIGEMRDLETVELALTAAETGHLVFGTLHTNS 231 (343)
T ss_pred ----EccccCCCCcCHHHHHHHhhccCCCEEEEeCCCCHHHHHHHHHHHHcCCcEEEEEcCCC
Confidence 00000111223456677888888999999999999888765554456766666665543
No 188
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=95.30 E-value=0.34 Score=54.52 Aligned_cols=166 Identities=12% Similarity=0.120 Sum_probs=87.4
Q ss_pred HHHHHHHHHhccCCceEEEEEecCCCChHHHHHHHHhCCC-----CccccceEEEeeeeeeccccccCCcchHHHHHHHH
Q 002559 166 KSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPP-----ERFVGGAVELGFGQWCSRAACNGSKSDYQKRLARK 240 (908)
Q Consensus 166 ~~~~l~~LL~~~~~~~vV~I~GmgGiGKTtLA~~v~~~~~-----~~F~~~~f~~~v~~wv~~~~~~~s~~~~~~~l~~~ 240 (908)
.-+.+...+..+.-.....++|+.|+||+++|..++..+- ..-+|+. |.+
T Consensus 10 ~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~-------------C~s------------ 64 (334)
T PRK07993 10 DYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGH-------------CRG------------ 64 (334)
T ss_pred HHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCC-------------CHH------------
Confidence 3345555555555577888999999999999999887542 1112221 100
Q ss_pred HHHHHHHhcccc-----ccCC-CCCCHHHHHHHHHHH----hccCCeeEEEecCCch--hHHHHHhhhc---CCCcEEEE
Q 002559 241 ISKFLVQIGFWK-----KIKD-ENSDLEYLCCLLQEA----LYGKSILILLDDVWEQ--DIVERFAKLY---DNDCKYLV 305 (908)
Q Consensus 241 i~~~L~~lg~~~-----~~~~-~~~~~~~l~~~l~~~----L~~kr~LLVLDDV~~~--~~~e~l~~~~---~~gsrILV 305 (908)
++.+....+++ .... ..-.+++..+..... ..+++-++|+|+++.. +..+.+++.+ ++++.+|+
T Consensus 65 -C~~~~~g~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL 143 (334)
T PRK07993 65 -CQLMQAGTHPDYYTLTPEKGKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFL 143 (334)
T ss_pred -HHHHHcCCCCCEEEEecccccccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEE
Confidence 00000000000 0000 112344433322221 1356678999999855 4566666544 45666666
Q ss_pred Eccch-hhhhh----ccccee-cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhHhCCchhhH
Q 002559 306 TTRNE-AVYEI----TEAEKV-ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGHHPLTV 365 (908)
Q Consensus 306 TTR~~-~va~~----~~~~~~-~L~~~ea~~Lf~~~~~~~~~~~~~~l~~i~~~Iv~~cgGLPLAI 365 (908)
+|.+. .+... +..... +++.++..+.+.+.. + .+ .+.+..++..++|.|...
T Consensus 144 ~t~~~~~lLpTIrSRCq~~~~~~~~~~~~~~~L~~~~---~--~~---~~~a~~~~~la~G~~~~A 201 (334)
T PRK07993 144 ACREPARLLATLRSRCRLHYLAPPPEQYALTWLSREV---T--MS---QDALLAALRLSAGAPGAA 201 (334)
T ss_pred EECChhhChHHHHhccccccCCCCCHHHHHHHHHHcc---C--CC---HHHHHHHHHHcCCCHHHH
Confidence 66554 34432 332233 567777666543321 1 11 244678899999999643
No 189
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=95.27 E-value=0.024 Score=58.92 Aligned_cols=127 Identities=17% Similarity=0.172 Sum_probs=57.5
Q ss_pred HHHHHHHHhccCCceEEEEEecCCCChHHHHHHHHhCC--CCccccceEEEeeeeeeccccccCCcchHHHHH-------
Q 002559 167 SKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDP--PERFVGGAVELGFGQWCSRAACNGSKSDYQKRL------- 237 (908)
Q Consensus 167 ~~~l~~LL~~~~~~~vV~I~GmgGiGKTtLA~~v~~~~--~~~F~~~~f~~~v~~wv~~~~~~~s~~~~~~~l------- 237 (908)
...+..++ +..+|.+.|++|.|||.||.+.+-+. ..+|. .+++. +..+.+.. ...+..-.+
T Consensus 10 ~~~~~al~----~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~-kiii~--Rp~v~~~~---~lGflpG~~~eK~~p~ 79 (205)
T PF02562_consen 10 KFALDALL----NNDLVIVNGPAGTGKTFLALAAALELVKEGEYD-KIIIT--RPPVEAGE---DLGFLPGDLEEKMEPY 79 (205)
T ss_dssp HHHHHHHH----H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-S-EEEEE--E-S--TT-------SS---------TT
T ss_pred HHHHHHHH----hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCc-EEEEE--ecCCCCcc---ccccCCCCHHHHHHHH
Confidence 33444444 34699999999999999999887543 24453 33332 22221100 111111111
Q ss_pred HHHHHHHHHHhccccccCCCCCCHHHHHHH------HHHHhccC---CeeEEEecCCc--hhHHHHHhhhcCCCcEEEEE
Q 002559 238 ARKISKFLVQIGFWKKIKDENSDLEYLCCL------LQEALYGK---SILILLDDVWE--QDIVERFAKLYDNDCKYLVT 306 (908)
Q Consensus 238 ~~~i~~~L~~lg~~~~~~~~~~~~~~l~~~------l~~~L~~k---r~LLVLDDV~~--~~~~e~l~~~~~~gsrILVT 306 (908)
..-+.+.|.. -......+.+... -...++|+ ..+||+|++.+ .+++..+..-.+.|||+|++
T Consensus 80 ~~p~~d~l~~-------~~~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR~g~~skii~~ 152 (205)
T PF02562_consen 80 LRPIYDALEE-------LFGKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILTRIGEGSKIIIT 152 (205)
T ss_dssp THHHHHHHTT-------TS-TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTTB-TT-EEEEE
T ss_pred HHHHHHHHHH-------HhChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHcccCCCcEEEEe
Confidence 1112111111 0111223322210 01123453 57999999965 46888888778999999998
Q ss_pred ccch
Q 002559 307 TRNE 310 (908)
Q Consensus 307 TR~~ 310 (908)
--..
T Consensus 153 GD~~ 156 (205)
T PF02562_consen 153 GDPS 156 (205)
T ss_dssp E---
T ss_pred cCce
Confidence 7544
No 190
>PRK05973 replicative DNA helicase; Provisional
Probab=95.26 E-value=0.15 Score=54.44 Aligned_cols=38 Identities=18% Similarity=0.240 Sum_probs=27.6
Q ss_pred CceEEEEEecCCCChHHHHHHHHhCCCCccccceEEEee
Q 002559 179 THQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGF 217 (908)
Q Consensus 179 ~~~vV~I~GmgGiGKTtLA~~v~~~~~~~F~~~~f~~~v 217 (908)
.-.++.|.|.+|+|||++|.+++.....+ ...++|+++
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~a~~-Ge~vlyfSl 100 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEAMKS-GRTGVFFTL 100 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhc-CCeEEEEEE
Confidence 35689999999999999999987654322 223555554
No 191
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=95.23 E-value=3.7 Score=50.83 Aligned_cols=26 Identities=35% Similarity=0.369 Sum_probs=22.4
Q ss_pred CceEEEEEecCCCChHHHHHHHHhCC
Q 002559 179 THQVILIVGLSGIGKSCLARQVASDP 204 (908)
Q Consensus 179 ~~~vV~I~GmgGiGKTtLA~~v~~~~ 204 (908)
+-..|+|+|..|+|||||++.+..-.
T Consensus 498 ~Ge~vaIvG~SGsGKSTL~KLL~gly 523 (709)
T COG2274 498 PGEKVAIVGRSGSGKSTLLKLLLGLY 523 (709)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34689999999999999999997543
No 192
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.23 E-value=0.16 Score=60.38 Aligned_cols=47 Identities=23% Similarity=0.377 Sum_probs=35.8
Q ss_pred cCccHHHHHHHHHhc-----------c-CCceEEEEEecCCCChHHHHHHHHhCCCCcc
Q 002559 162 PISSKSKFLRKLLEQ-----------E-ETHQVILIVGLSGIGKSCLARQVASDPPERF 208 (908)
Q Consensus 162 g~e~~~~~l~~LL~~-----------~-~~~~vV~I~GmgGiGKTtLA~~v~~~~~~~F 208 (908)
|.++...++++...- . ..++=|..+|++|+|||++|+++++...-.|
T Consensus 438 GlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nF 496 (693)
T KOG0730|consen 438 GLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNF 496 (693)
T ss_pred CHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCe
Confidence 577777777655431 1 3478899999999999999999999876555
No 193
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=95.22 E-value=0.32 Score=50.98 Aligned_cols=26 Identities=27% Similarity=0.471 Sum_probs=22.8
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
-.+++|+|..|+|||||++.++--..
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 54 (216)
T TIGR00960 29 GEMVFLVGHSGAGKSTFLKLILGIEK 54 (216)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 46899999999999999999987543
No 194
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=95.22 E-value=0.058 Score=55.97 Aligned_cols=36 Identities=22% Similarity=0.326 Sum_probs=25.0
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCCCCccccceEEEe
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELG 216 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~~~~F~~~~f~~~ 216 (908)
+++|.++|+.|+||||.+.+++...+.+ ...+-.+.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~-~~~v~lis 36 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLK-GKKVALIS 36 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHT-T--EEEEE
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhc-cccceeec
Confidence 4799999999999999877777665433 33343333
No 195
>PRK12608 transcription termination factor Rho; Provisional
Probab=95.19 E-value=0.057 Score=60.99 Aligned_cols=28 Identities=32% Similarity=0.331 Sum_probs=23.3
Q ss_pred eEEEEEecCCCChHHHHHHHHhCCCCcc
Q 002559 181 QVILIVGLSGIGKSCLARQVASDPPERF 208 (908)
Q Consensus 181 ~vV~I~GmgGiGKTtLA~~v~~~~~~~F 208 (908)
.-+.|+|.+|+|||||++.+++....+.
T Consensus 134 QR~LIvG~pGtGKTTLl~~la~~i~~~~ 161 (380)
T PRK12608 134 QRGLIVAPPRAGKTVLLQQIAAAVAANH 161 (380)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 4568999999999999999988765443
No 196
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=95.17 E-value=0.044 Score=69.10 Aligned_cols=47 Identities=21% Similarity=0.191 Sum_probs=32.2
Q ss_pred CCCcCccHHHHHHHHHh-------cc-CCceEEEEEecCCCChHHHHHHHHhCCC
Q 002559 159 QGYPISSKSKFLRKLLE-------QE-ETHQVILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 159 ~~~g~e~~~~~l~~LL~-------~~-~~~~vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
..+|.++-.+.+...+. .. ....++.++|++|+|||.||+.+++.+.
T Consensus 567 ~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~ 621 (852)
T TIGR03345 567 RVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLY 621 (852)
T ss_pred eEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 44566665555544432 11 2255789999999999999999987653
No 197
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.13 E-value=0.33 Score=50.59 Aligned_cols=26 Identities=19% Similarity=0.279 Sum_probs=22.9
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
-.+++|+|..|+|||||++.++-...
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~~~ 51 (210)
T cd03269 26 GEIFGLLGPNGAGKTTTIRMILGIIL 51 (210)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 46899999999999999999997543
No 198
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.12 E-value=0.15 Score=54.83 Aligned_cols=128 Identities=20% Similarity=0.175 Sum_probs=74.4
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCCCCccccceEEEeeeeeeccccccCCcchHHHHHHHHHHHHHHHhcccccc----C
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACNGSKSDYQKRLARKISKFLVQIGFWKKI----K 255 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~~~~F~~~~f~~~v~~wv~~~~~~~s~~~~~~~l~~~i~~~L~~lg~~~~~----~ 255 (908)
-.+++|+|.+|+|||||++.+..-..... +.++|-.-. .... + .....+.+.+.|...|..... +
T Consensus 39 ge~~glVGESG~GKSTlgr~i~~L~~pt~-G~i~f~g~~-i~~~-----~----~~~~~~~v~elL~~Vgl~~~~~~ryP 107 (268)
T COG4608 39 GETLGLVGESGCGKSTLGRLILGLEEPTS-GEILFEGKD-ITKL-----S----KEERRERVLELLEKVGLPEEFLYRYP 107 (268)
T ss_pred CCEEEEEecCCCCHHHHHHHHHcCcCCCC-ceEEEcCcc-hhhc-----c----hhHHHHHHHHHHHHhCCCHHHhhcCC
Confidence 46899999999999999999987665332 222221111 1000 1 223334455556665532211 1
Q ss_pred CCCCCHHHHHHHHHHHhccCCeeEEEecCCchhHH-------HHHhhhc-CCCcEEEEEccchhhhhhccc
Q 002559 256 DENSDLEYLCCLLQEALYGKSILILLDDVWEQDIV-------ERFAKLY-DNDCKYLVTTRNEAVYEITEA 318 (908)
Q Consensus 256 ~~~~~~~~l~~~l~~~L~~kr~LLVLDDV~~~~~~-------e~l~~~~-~~gsrILVTTR~~~va~~~~~ 318 (908)
...+.-+...-.|.+.|.-++-++|.|..-+.-+. +.+...- ..|-..+.-|.+-.+...+..
T Consensus 108 helSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isd 178 (268)
T COG4608 108 HELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISD 178 (268)
T ss_pred cccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcc
Confidence 12223333445577788889999999997654322 2222211 247788888888887775544
No 199
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.11 E-value=0.13 Score=52.31 Aligned_cols=26 Identities=27% Similarity=0.456 Sum_probs=23.0
Q ss_pred CceEEEEEecCCCChHHHHHHHHhCC
Q 002559 179 THQVILIVGLSGIGKSCLARQVASDP 204 (908)
Q Consensus 179 ~~~vV~I~GmgGiGKTtLA~~v~~~~ 204 (908)
+.++|+|.|++|+||||+|+.++...
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 35789999999999999999998764
No 200
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.09 E-value=0.21 Score=50.20 Aligned_cols=119 Identities=20% Similarity=0.198 Sum_probs=61.5
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCCCCccccceEEEeee---eeeccccccCCcchHHHHHHHHHHHHHHHhccccccCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFG---QWCSRAACNGSKSDYQKRLARKISKFLVQIGFWKKIKD 256 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~~~~F~~~~f~~~v~---~wv~~~~~~~s~~~~~~~l~~~i~~~L~~lg~~~~~~~ 256 (908)
-.+++|+|..|.|||||++.++-..... .+.++++-. ..+... .......+.+.+.- + ...
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~~~~--~G~i~~~~~~~i~~~~q~-----~~~~~~tv~~nl~~-----~----~~~ 90 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGLWPWG--SGRIGMPEGEDLLFLPQR-----PYLPLGTLREQLIY-----P----WDD 90 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCC--CceEEECCCceEEEECCC-----CccccccHHHHhhc-----c----CCC
Confidence 4689999999999999999998765421 233332211 111111 00111133333310 0 112
Q ss_pred CCCCHHHHHHHHHHHhccCCeeEEEecCCch---hHHHHHhhhcC-CCcEEEEEccchhhhh
Q 002559 257 ENSDLEYLCCLLQEALYGKSILILLDDVWEQ---DIVERFAKLYD-NDCKYLVTTRNEAVYE 314 (908)
Q Consensus 257 ~~~~~~~l~~~l~~~L~~kr~LLVLDDV~~~---~~~e~l~~~~~-~gsrILVTTR~~~va~ 314 (908)
..+.-+...-.+...+-.++=++++|+.... ...+.+...+. -+..||++|.+.....
T Consensus 91 ~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~tiiivsh~~~~~~ 152 (166)
T cd03223 91 VLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKELGITVISVGHRPSLWK 152 (166)
T ss_pred CCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHhCCEEEEEeCChhHHh
Confidence 2222333334455556667778899987533 22222222111 1467888888876543
No 201
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=95.08 E-value=0.18 Score=51.37 Aligned_cols=142 Identities=17% Similarity=0.181 Sum_probs=81.1
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCCCCc-----c------------------ccceEEEeeeeeecccccc------CCc
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDPPER-----F------------------VGGAVELGFGQWCSRAACN------GSK 230 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~~~~-----F------------------~~~~f~~~v~~wv~~~~~~------~s~ 230 (908)
-..+-++|++|.|||||.+.+|...+.. | .-+++|-|++.-....... .-.
T Consensus 28 Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~ 107 (223)
T COG2884 28 GEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVI 107 (223)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhhhhhcc
Confidence 4688999999999999999999764311 1 0123333433211100000 000
Q ss_pred chHHHHHHHHHHHHHHHhcccccc---CCCCCCHHHHHHHHHHHhccCCeeEEEecC----CchhHHHHHh---hhcCCC
Q 002559 231 SDYQKRLARKISKFLVQIGFWKKI---KDENSDLEYLCCLLQEALYGKSILILLDDV----WEQDIVERFA---KLYDND 300 (908)
Q Consensus 231 ~~~~~~l~~~i~~~L~~lg~~~~~---~~~~~~~~~l~~~l~~~L~~kr~LLVLDDV----~~~~~~e~l~---~~~~~g 300 (908)
.....++-+.....|.-.|...+. +...+.-++..-.|.+.+-+++-+|+-|.- +....|+-+. ..-..|
T Consensus 108 G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~G 187 (223)
T COG2884 108 GKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLG 187 (223)
T ss_pred CCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcC
Confidence 111234555555555555543222 222334455556677778888889998864 4444555332 222469
Q ss_pred cEEEEEccchhhhhhccccee
Q 002559 301 CKYLVTTRNEAVYEITEAEKV 321 (908)
Q Consensus 301 srILVTTR~~~va~~~~~~~~ 321 (908)
..||++|.+.++.+.+....+
T Consensus 188 tTVl~ATHd~~lv~~~~~rvl 208 (223)
T COG2884 188 TTVLMATHDLELVNRMRHRVL 208 (223)
T ss_pred cEEEEEeccHHHHHhccCcEE
Confidence 999999999998876654443
No 202
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.06 E-value=0.031 Score=55.19 Aligned_cols=24 Identities=46% Similarity=0.656 Sum_probs=22.3
Q ss_pred EEEEEecCCCChHHHHHHHHhCCC
Q 002559 182 VILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 182 vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
+|+|-|++|+||||+|+.++++..
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~g 25 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLG 25 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhC
Confidence 689999999999999999999875
No 203
>PRK04328 hypothetical protein; Provisional
Probab=95.05 E-value=0.18 Score=54.34 Aligned_cols=48 Identities=21% Similarity=0.240 Sum_probs=32.1
Q ss_pred HHHHHHhcc-CCceEEEEEecCCCChHHHHHHHHhCCCCccccceEEEee
Q 002559 169 FLRKLLEQE-ETHQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGF 217 (908)
Q Consensus 169 ~l~~LL~~~-~~~~vV~I~GmgGiGKTtLA~~v~~~~~~~F~~~~f~~~v 217 (908)
-+..+|..+ +.-.++.|.|.+|+|||+||.++......+ ...++|+++
T Consensus 11 ~LD~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~~~~~-ge~~lyis~ 59 (249)
T PRK04328 11 GMDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQM-GEPGVYVAL 59 (249)
T ss_pred hHHHHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhc-CCcEEEEEe
Confidence 345555543 236799999999999999999976553222 234566655
No 204
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=95.04 E-value=0.045 Score=61.36 Aligned_cols=30 Identities=23% Similarity=0.088 Sum_probs=26.3
Q ss_pred CceEEEEEecCCCChHHHHHHHHhCCCCcc
Q 002559 179 THQVILIVGLSGIGKSCLARQVASDPPERF 208 (908)
Q Consensus 179 ~~~vV~I~GmgGiGKTtLA~~v~~~~~~~F 208 (908)
.++.++|||++|+|||.+|+++++.....|
T Consensus 147 ~PlgllL~GPPGcGKTllAraiA~elg~~~ 176 (413)
T PLN00020 147 VPLILGIWGGKGQGKSFQCELVFKKMGIEP 176 (413)
T ss_pred CCeEEEeeCCCCCCHHHHHHHHHHHcCCCe
Confidence 478999999999999999999999876443
No 205
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.01 E-value=0.018 Score=54.45 Aligned_cols=22 Identities=36% Similarity=0.598 Sum_probs=20.2
Q ss_pred EEEEecCCCChHHHHHHHHhCC
Q 002559 183 ILIVGLSGIGKSCLARQVASDP 204 (908)
Q Consensus 183 V~I~GmgGiGKTtLA~~v~~~~ 204 (908)
|+|.|.+|+||||+|+.+.+..
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999998874
No 206
>PRK10867 signal recognition particle protein; Provisional
Probab=95.00 E-value=0.086 Score=61.17 Aligned_cols=39 Identities=26% Similarity=0.330 Sum_probs=27.3
Q ss_pred CceEEEEEecCCCChHHHHHHHHhCCCCccccceEEEee
Q 002559 179 THQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGF 217 (908)
Q Consensus 179 ~~~vV~I~GmgGiGKTtLA~~v~~~~~~~F~~~~f~~~v 217 (908)
.+.+|.++|.+|+||||.|..++..++.+....+..++.
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~ 137 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAA 137 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEc
Confidence 368999999999999998888877554332223444444
No 207
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=94.99 E-value=0.33 Score=51.35 Aligned_cols=26 Identities=38% Similarity=0.483 Sum_probs=22.9
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
-.+++|.|..|+|||||++.++....
T Consensus 48 Ge~~~i~G~nGsGKSTLl~~l~G~~~ 73 (224)
T cd03220 48 GERIGLIGRNGAGKSTLLRLLAGIYP 73 (224)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 46899999999999999999997654
No 208
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=94.99 E-value=0.26 Score=50.26 Aligned_cols=23 Identities=30% Similarity=0.524 Sum_probs=20.6
Q ss_pred ceEEEEEecCCCChHHHHHHHHh
Q 002559 180 HQVILIVGLSGIGKSCLARQVAS 202 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~ 202 (908)
-.+++|+|+.|+|||||.+.+..
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHhh
Confidence 46899999999999999998864
No 209
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=94.96 E-value=0.22 Score=48.80 Aligned_cols=26 Identities=35% Similarity=0.457 Sum_probs=23.0
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
-.+++|+|..|.|||||++.++....
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~ 51 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGELE 51 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCCC
Confidence 46899999999999999999987654
No 210
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.95 E-value=0.47 Score=49.12 Aligned_cols=26 Identities=23% Similarity=0.335 Sum_probs=22.9
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
-.+++|+|..|.|||||.+.++....
T Consensus 27 Ge~~~l~G~nGsGKSTLl~~i~G~~~ 52 (200)
T PRK13540 27 GGLLHLKGSNGAGKTTLLKLIAGLLN 52 (200)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 46999999999999999999987643
No 211
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.95 E-value=0.2 Score=49.76 Aligned_cols=113 Identities=24% Similarity=0.262 Sum_probs=60.0
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCCCCccccceEEEeeeeeeccccccCCcchHHHHHHHHHHHHHHHhccccccCCCCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACNGSKSDYQKRLARKISKFLVQIGFWKKIKDENS 259 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~~~~F~~~~f~~~v~~wv~~~~~~~s~~~~~~~l~~~i~~~L~~lg~~~~~~~~~~ 259 (908)
-.+++|+|..|.|||||.+.++..... . .+.++++-... .. ......... ++. ....+
T Consensus 25 g~~~~i~G~nGsGKStll~~l~g~~~~-~-~G~i~~~~~~~--------~~-~~~~~~~~~-------i~~----~~qlS 82 (157)
T cd00267 25 GEIVALVGPNGSGKSTLLRAIAGLLKP-T-SGEILIDGKDI--------AK-LPLEELRRR-------IGY----VPQLS 82 (157)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC-C-ccEEEECCEEc--------cc-CCHHHHHhc-------eEE----EeeCC
Confidence 369999999999999999999876542 2 23333322110 00 001111111 111 00122
Q ss_pred CHHHHHHHHHHHhccCCeeEEEecCCch---hHHH----HHhhhcCCCcEEEEEccchhhhh
Q 002559 260 DLEYLCCLLQEALYGKSILILLDDVWEQ---DIVE----RFAKLYDNDCKYLVTTRNEAVYE 314 (908)
Q Consensus 260 ~~~~l~~~l~~~L~~kr~LLVLDDV~~~---~~~e----~l~~~~~~gsrILVTTR~~~va~ 314 (908)
.-+...-.+...+....-++++|+.... .... .+......+..++++|.+.....
T Consensus 83 ~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~ 144 (157)
T cd00267 83 GGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAE 144 (157)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 2223333455556666789999998633 2222 22222234578889988876544
No 212
>CHL00195 ycf46 Ycf46; Provisional
Probab=94.89 E-value=0.21 Score=58.91 Aligned_cols=27 Identities=37% Similarity=0.530 Sum_probs=23.9
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCCCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDPPE 206 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~~~ 206 (908)
++-|.++|++|+|||.+|+.+++....
T Consensus 259 pkGILL~GPpGTGKTllAkaiA~e~~~ 285 (489)
T CHL00195 259 PRGLLLVGIQGTGKSLTAKAIANDWQL 285 (489)
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhCC
Confidence 677899999999999999999987653
No 213
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=94.88 E-value=0.15 Score=58.88 Aligned_cols=53 Identities=17% Similarity=0.210 Sum_probs=35.1
Q ss_pred HHHHHHHHhccCCeeEEEecCCchh-------HHHHHhhhcCCCcEEEEEccchhhhhhc
Q 002559 264 LCCLLQEALYGKSILILLDDVWEQD-------IVERFAKLYDNDCKYLVTTRNEAVYEIT 316 (908)
Q Consensus 264 l~~~l~~~L~~kr~LLVLDDV~~~~-------~~e~l~~~~~~gsrILVTTR~~~va~~~ 316 (908)
..-.+.+.+.+.++|+|||.-+..- -.+.+...-..|+.+|+.|..+.+...+
T Consensus 479 QRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~ 538 (580)
T COG4618 479 QRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASV 538 (580)
T ss_pred HHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhc
Confidence 3445778899999999999876431 1234444445688777777777665543
No 214
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.86 E-value=0.065 Score=63.72 Aligned_cols=75 Identities=21% Similarity=0.331 Sum_probs=46.4
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCCCCccccceEEEeeeeeeccccccCCcchHHHHHHHHHHHHHHHhccccccCCCCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACNGSKSDYQKRLARKISKFLVQIGFWKKIKDENS 259 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~~~~F~~~~f~~~v~~wv~~~~~~~s~~~~~~~l~~~i~~~L~~lg~~~~~~~~~~ 259 (908)
..-|.|.|..|+|||+||+++++.....-.+++-+++ |.........++.+.+
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~---------Cs~l~~~~~e~iQk~l------------------ 483 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVS---------CSTLDGSSLEKIQKFL------------------ 483 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEe---------chhccchhHHHHHHHH------------------
Confidence 5678899999999999999999877643222222221 2212222233332222
Q ss_pred CHHHHHHHHHHHhccCCeeEEEecCCc
Q 002559 260 DLEYLCCLLQEALYGKSILILLDDVWE 286 (908)
Q Consensus 260 ~~~~l~~~l~~~L~~kr~LLVLDDV~~ 286 (908)
...+.+.+...+-+|||||++.
T Consensus 484 -----~~vfse~~~~~PSiIvLDdld~ 505 (952)
T KOG0735|consen 484 -----NNVFSEALWYAPSIIVLDDLDC 505 (952)
T ss_pred -----HHHHHHHHhhCCcEEEEcchhh
Confidence 2334556677889999999963
No 215
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.85 E-value=0.016 Score=57.05 Aligned_cols=30 Identities=30% Similarity=0.533 Sum_probs=24.9
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCCCCc-cc
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDPPER-FV 209 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~~~~-F~ 209 (908)
..-|+|.|++|+||||+++.+++.++.+ |.
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g~k 35 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREKGYK 35 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhcCce
Confidence 3468999999999999999999877644 44
No 216
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=94.84 E-value=0.23 Score=53.01 Aligned_cols=23 Identities=35% Similarity=0.317 Sum_probs=20.1
Q ss_pred EEEEEecCCCChHHHHHHHHhCC
Q 002559 182 VILIVGLSGIGKSCLARQVASDP 204 (908)
Q Consensus 182 vV~I~GmgGiGKTtLA~~v~~~~ 204 (908)
+..|+|++|+|||+||..++...
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~v 25 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAM 25 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHH
Confidence 56789999999999999998754
No 217
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=94.84 E-value=1.2 Score=60.37 Aligned_cols=272 Identities=20% Similarity=0.185 Sum_probs=162.1
Q ss_pred ccchhhcCchhHHHhhhcCCCCCCccccHHHHHhhhhhcCChhhHHHHhhhccHHHHHhhcCcchhhhhHHHHHHHHHHH
Q 002559 616 IPSLETTGAVDKLAGLLQKSEDPMIQTDILTVLTKLAEFGTPETVDKVLQSIPFDKLATLLSYDAKEWHENMFTILMSLA 695 (908)
Q Consensus 616 ~~~l~~~g~~~kL~~l~~~~~~~~t~~~~~~~l~~l~e~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 695 (908)
.+.....|.+..|..++... ++.........+..++. +.-+....+...=-.-.+.+||+..+..........+.-++
T Consensus 439 ~~aIi~~ggIp~LV~LL~s~-s~~iQ~~A~~~L~nLa~-~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa 516 (2102)
T PLN03200 439 WEALGGREGVQLLISLLGLS-SEQQQEYAVALLAILTD-EVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLC 516 (2102)
T ss_pred HHHHHHcCcHHHHHHHHcCC-CHHHHHHHHHHHHHHHc-CCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 34555667777888887654 34344444555555543 22233444444444456777888777777777666666555
Q ss_pred hhcchHHHHHHH-HhhhhHHHHHHhhcchhHHHHHHHHHHHHHHHhcCCCcccccCCCccccc-----ccccccccc---
Q 002559 696 KVGKSKAVEKMF-AFEIDKNLIKLLENGSEVVQHHAIVTLKAFYELAGSPANASLRPANLNLL-----PWQVRLRLE--- 766 (908)
Q Consensus 696 ~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~--- 766 (908)
.. ......++ .+|+=+.|.++|.+|+.-.|..|.-+|..+..-|-+.. + +....+| -++.. .++
T Consensus 517 ~~--~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~---I-~~Lv~LLlsdd~~~~~~-aL~vLg 589 (2102)
T PLN03200 517 CH--SEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAAT---I-SQLTALLLGDLPESKVH-VLDVLG 589 (2102)
T ss_pred CC--cHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhH---H-HHHHHHhcCCChhHHHH-HHHHHH
Confidence 52 22345555 56888889999999999999999999988866443211 1 0000000 00000 000
Q ss_pred ee-EeecCCCCC---CCCcccHHHHHHHHhCCCchhHHHHhhhhhHHHHhhcchhhHHHHhccchHHHHHHHhhccCCCC
Q 002559 767 RF-IISDRTVPP---SPKSQTFEDVIHRLLDGDNKQVQGATQDLIPFLEKAGELKIRDMIIKSPLIAKLSELLQYAHPEQ 842 (908)
Q Consensus 767 ~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 842 (908)
+. .+.+.+-.. .....-++.++.-+..++....-+|.--|..+. ++.+.+.+.+.....+..|-.+|+. .+
T Consensus 590 nIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~--a~~~d~~~avv~agaIpPLV~LLss---~~ 664 (2102)
T PLN03200 590 HVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIF--SSRQDLCESLATDEIINPCIKLLTN---NT 664 (2102)
T ss_pred HHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHh--cCChHHHHHHHHcCCHHHHHHHHhc---CC
Confidence 00 000000000 001122333333333333333334443333333 3566677778888888899999965 45
Q ss_pred cccchhhHHHHHHhhhcCCchHHHHHhhcCChHHHHHhhccCcchhhhhcchhhHHHHH
Q 002559 843 NSVRSESAFLLTKLACAGGEPCIKKFLEYDIIPELVKMMQCCVPEIQDSAYAAPDVLQQ 901 (908)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 901 (908)
..++-|+|+.|..|+..|-+..+.+++++|+|+-|++++.|+-.++.+-|-.||.-+-+
T Consensus 665 ~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~ 723 (2102)
T PLN03200 665 EAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLS 723 (2102)
T ss_pred hHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHc
Confidence 56899999999999964444557788999999999999999988888888888766543
No 218
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=94.83 E-value=0.079 Score=53.59 Aligned_cols=22 Identities=36% Similarity=0.588 Sum_probs=19.5
Q ss_pred EEEEEecCCCChHHHHHHHHhC
Q 002559 182 VILIVGLSGIGKSCLARQVASD 203 (908)
Q Consensus 182 vV~I~GmgGiGKTtLA~~v~~~ 203 (908)
++.|.|.+|+|||++|.+++..
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~ 22 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAE 22 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHh
Confidence 3679999999999999999865
No 219
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=94.82 E-value=0.15 Score=56.60 Aligned_cols=44 Identities=23% Similarity=0.255 Sum_probs=30.7
Q ss_pred cCccHHHHHHHHHhccCC-ceEEEEEecCCCChHHHHHHHHhCCC
Q 002559 162 PISSKSKFLRKLLEQEET-HQVILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 162 g~e~~~~~l~~LL~~~~~-~~vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
+.+.....+........+ .+.+.++|++|+||||+|..+++.+-
T Consensus 5 ~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~ 49 (325)
T COG0470 5 PWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELL 49 (325)
T ss_pred cchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHh
Confidence 444444444444443333 45599999999999999999998764
No 220
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=94.81 E-value=0.19 Score=50.88 Aligned_cols=26 Identities=38% Similarity=0.455 Sum_probs=22.9
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
-.+++|+|..|.|||||.+.++-...
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~~ 53 (173)
T cd03246 28 GESLAIIGPSGSGKSTLARLILGLLR 53 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccC
Confidence 46899999999999999999987654
No 221
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=94.81 E-value=0.44 Score=49.94 Aligned_cols=25 Identities=28% Similarity=0.329 Sum_probs=22.3
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDP 204 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~ 204 (908)
-.+++|+|..|.|||||.+.++--.
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (218)
T cd03266 31 GEVTGLLGPNGAGKTTTLRMLAGLL 55 (218)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCc
Confidence 4689999999999999999998654
No 222
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=94.80 E-value=0.33 Score=49.27 Aligned_cols=26 Identities=35% Similarity=0.465 Sum_probs=22.9
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
-.+++|.|..|+|||||++.++-...
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~~ 53 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGDLK 53 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccCC
Confidence 46899999999999999999987654
No 223
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=94.79 E-value=0.25 Score=57.45 Aligned_cols=28 Identities=36% Similarity=0.490 Sum_probs=24.3
Q ss_pred CceEEEEEecCCCChHHHHHHHHhCCCC
Q 002559 179 THQVILIVGLSGIGKSCLARQVASDPPE 206 (908)
Q Consensus 179 ~~~vV~I~GmgGiGKTtLA~~v~~~~~~ 206 (908)
.+.+|.++|.+|+||||+|..++..++.
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~ 121 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKK 121 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHH
Confidence 3689999999999999999999876653
No 224
>PRK06696 uridine kinase; Validated
Probab=94.78 E-value=0.034 Score=58.83 Aligned_cols=28 Identities=21% Similarity=0.336 Sum_probs=25.0
Q ss_pred CCceEEEEEecCCCChHHHHHHHHhCCC
Q 002559 178 ETHQVILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 178 ~~~~vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
+.+.+|+|.|.+|+||||||+.+++.+.
T Consensus 20 ~~~~iI~I~G~sgsGKSTlA~~L~~~l~ 47 (223)
T PRK06696 20 TRPLRVAIDGITASGKTTFADELAEEIK 47 (223)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3588999999999999999999998764
No 225
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.75 E-value=0.35 Score=50.27 Aligned_cols=26 Identities=31% Similarity=0.433 Sum_probs=22.9
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
-.+++|+|..|.|||||.+.++....
T Consensus 27 Ge~~~l~G~nGsGKSTLl~~l~G~~~ 52 (204)
T PRK13538 27 GELVQIEGPNGAGKTSLLRILAGLAR 52 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 46899999999999999999987643
No 226
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.74 E-value=0.63 Score=48.77 Aligned_cols=26 Identities=31% Similarity=0.413 Sum_probs=22.9
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
-.+++|+|..|.|||||.+.++-...
T Consensus 37 Ge~~~i~G~nGsGKSTLl~~i~G~~~ 62 (214)
T PRK13543 37 GEALLVQGDNGAGKTTLLRVLAGLLH 62 (214)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCC
Confidence 46899999999999999999987643
No 227
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=94.73 E-value=0.25 Score=51.31 Aligned_cols=25 Identities=36% Similarity=0.615 Sum_probs=22.4
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDP 204 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~ 204 (908)
-.+++|+|..|.|||||.+.++-..
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (200)
T cd03217 26 GEVHALMGPNGSGKSTLAKTIMGHP 50 (200)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4699999999999999999998763
No 228
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=94.72 E-value=0.53 Score=48.66 Aligned_cols=26 Identities=31% Similarity=0.441 Sum_probs=22.8
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
-.+++|+|..|.|||||.+.++....
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~G~~~ 51 (198)
T TIGR01189 26 GEALQVTGPNGIGKTTLLRILAGLLR 51 (198)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 46899999999999999999987643
No 229
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=94.70 E-value=0.025 Score=58.49 Aligned_cols=24 Identities=42% Similarity=0.513 Sum_probs=22.2
Q ss_pred EEEEEecCCCChHHHHHHHHhCCC
Q 002559 182 VILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 182 vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
||+|.|.+|+||||+|+.+...+.
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~ 24 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILN 24 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 699999999999999999998765
No 230
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=94.70 E-value=0.11 Score=65.02 Aligned_cols=47 Identities=26% Similarity=0.374 Sum_probs=34.1
Q ss_pred CCcCccHHHHHHHHHhcc------------CCceEEEEEecCCCChHHHHHHHHhCCCC
Q 002559 160 GYPISSKSKFLRKLLEQE------------ETHQVILIVGLSGIGKSCLARQVASDPPE 206 (908)
Q Consensus 160 ~~g~e~~~~~l~~LL~~~------------~~~~vV~I~GmgGiGKTtLA~~v~~~~~~ 206 (908)
..|.+...+.+.+++... ...+-|.++|++|+|||+||+.+++....
T Consensus 180 i~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~ 238 (733)
T TIGR01243 180 IGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGA 238 (733)
T ss_pred hcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCC
Confidence 336666666666665320 22467889999999999999999987643
No 231
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=94.65 E-value=0.38 Score=49.93 Aligned_cols=26 Identities=31% Similarity=0.345 Sum_probs=22.7
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
-.+++|+|..|.|||||.+.++-...
T Consensus 24 Ge~~~i~G~nGsGKSTLl~~l~G~~~ 49 (206)
T TIGR03608 24 GKMYAIIGESGSGKSTLLNIIGLLEK 49 (206)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 36899999999999999999987543
No 232
>PRK14974 cell division protein FtsY; Provisional
Probab=94.64 E-value=0.26 Score=55.44 Aligned_cols=27 Identities=30% Similarity=0.404 Sum_probs=23.0
Q ss_pred CceEEEEEecCCCChHHHHHHHHhCCC
Q 002559 179 THQVILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 179 ~~~vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
.+.+|+++|++|+||||++..++..+.
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~ 165 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLK 165 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 478999999999999998888876554
No 233
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=94.60 E-value=0.059 Score=49.97 Aligned_cols=74 Identities=27% Similarity=0.379 Sum_probs=64.3
Q ss_pred HhccchHHHHHHHhhccCCCCcccchhhHHHHHHhhhcCCchHHHHHhhcCChHHHHHhhccCcchhhhhcchhhHHH
Q 002559 822 IIKSPLIAKLSELLQYAHPEQNSVRSESAFLLTKLACAGGEPCIKKFLEYDIIPELVKMMQCCVPEIQDSAYAAPDVL 899 (908)
Q Consensus 822 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 899 (908)
+.+..++..|.++|+..+ +.+|..+++.+.+++ .+-+++.+.|++.++++.|+++|+..-++++..+..||.-+
T Consensus 3 ~~~~~~i~~l~~~l~~~~---~~~~~~a~~~l~~l~-~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l 76 (120)
T cd00020 3 VIQAGGLPALVSLLSSSD---ENVQREAAWALSNLS-AGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNL 76 (120)
T ss_pred HHHcCChHHHHHHHHcCC---HHHHHHHHHHHHHHh-cCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 456678888888887554 789999999999987 66799999999999999999999998888999998888765
No 234
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=94.60 E-value=0.12 Score=60.93 Aligned_cols=177 Identities=17% Similarity=0.250 Sum_probs=95.3
Q ss_pred cCCCcCccHHHHHHHHHhccCCceEEEEEecCCCChHHHHHHHHhCCC----Ccc-ccceEEEeeeeeeccccccCCcch
Q 002559 158 EQGYPISSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPP----ERF-VGGAVELGFGQWCSRAACNGSKSD 232 (908)
Q Consensus 158 ~~~~g~e~~~~~l~~LL~~~~~~~vV~I~GmgGiGKTtLA~~v~~~~~----~~F-~~~~f~~~v~~wv~~~~~~~s~~~ 232 (908)
...+|.+.-.+.+...+..+.-..-....|+-|+||||+|+-++..+- ... +|+. | ..|. +...
T Consensus 16 ~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~--------C--~~Ck-~I~~ 84 (515)
T COG2812 16 DDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGK--------C--ISCK-EINE 84 (515)
T ss_pred HHhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchh--------h--hhhH-hhhc
Confidence 345788888889999888776567778899999999999999987542 111 1111 0 1111 0000
Q ss_pred HHHHHHHHHHHHHHHhccccccCCCCCCHHHHHHHHHHHh----ccCCeeEEEecCC--chhHHHHHhhhc---CCCcEE
Q 002559 233 YQKRLARKISKFLVQIGFWKKIKDENSDLEYLCCLLQEAL----YGKSILILLDDVW--EQDIVERFAKLY---DNDCKY 303 (908)
Q Consensus 233 ~~~~l~~~i~~~L~~lg~~~~~~~~~~~~~~l~~~l~~~L----~~kr~LLVLDDV~--~~~~~e~l~~~~---~~gsrI 303 (908)
. ... ++++ ++ ......+++..+.+.+.. .++-=..|+|.|. +...|+.++..+ |+....
T Consensus 85 g--~~~-DviE----iD-----aASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~F 152 (515)
T COG2812 85 G--SLI-DVIE----ID-----AASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKF 152 (515)
T ss_pred C--Ccc-cchh----hh-----hhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEE
Confidence 0 000 0100 00 000113333333333222 2455578899997 557788888655 445565
Q ss_pred EEEccch-hhhh----hccccee-cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhHhCC
Q 002559 304 LVTTRNE-AVYE----ITEAEKV-ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGH 360 (908)
Q Consensus 304 LVTTR~~-~va~----~~~~~~~-~L~~~ea~~Lf~~~~~~~~~~~~~~l~~i~~~Iv~~cgG 360 (908)
|+.|.+. .+.. .|..+.. .++.++-...+..++...+.... ++....|++..+|
T Consensus 153 IlATTe~~Kip~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e---~~aL~~ia~~a~G 212 (515)
T COG2812 153 ILATTEPQKIPNTILSRCQRFDFKRLDLEEIAKHLAAILDKEGINIE---EDALSLIARAAEG 212 (515)
T ss_pred EEecCCcCcCchhhhhccccccccCCCHHHHHHHHHHHHHhcCCccC---HHHHHHHHHHcCC
Confidence 5555554 3332 3333333 67888777777776654443222 2444444444444
No 235
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=94.60 E-value=0.23 Score=54.00 Aligned_cols=38 Identities=18% Similarity=0.279 Sum_probs=28.4
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCCCCccccceEEEee
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGF 217 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~~~~F~~~~f~~~v 217 (908)
-.++.|.|.+|+||||++.+++.....+....++|+++
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~ 67 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISL 67 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEc
Confidence 56889999999999999999987764332334665544
No 236
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=94.58 E-value=0.7 Score=48.28 Aligned_cols=26 Identities=31% Similarity=0.419 Sum_probs=22.7
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
-.+++|+|..|+|||||++.++-...
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~G~~~ 50 (213)
T cd03235 25 GEFLAIVGPNGAGKSTLLKAILGLLK 50 (213)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCCC
Confidence 46899999999999999999987543
No 237
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=94.55 E-value=0.24 Score=51.52 Aligned_cols=22 Identities=36% Similarity=0.442 Sum_probs=20.3
Q ss_pred eEEEEEecCCCChHHHHHHHHh
Q 002559 181 QVILIVGLSGIGKSCLARQVAS 202 (908)
Q Consensus 181 ~vV~I~GmgGiGKTtLA~~v~~ 202 (908)
++++|+|+.|.|||||.+.+.-
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~ 47 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGV 47 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHH
Confidence 7999999999999999998874
No 238
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=94.55 E-value=0.081 Score=53.43 Aligned_cols=24 Identities=46% Similarity=0.657 Sum_probs=21.2
Q ss_pred EEEEEecCCCChHHHHHHHHhCCC
Q 002559 182 VILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 182 vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
++.++|++|+||||++..++....
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~ 25 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLK 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 688999999999999999887654
No 239
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.51 E-value=0.5 Score=47.75 Aligned_cols=26 Identities=19% Similarity=0.310 Sum_probs=22.9
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
-.+++|+|..|.|||||.+.++-...
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~ 51 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIILGLLK 51 (173)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 46899999999999999999987654
No 240
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=94.50 E-value=0.041 Score=61.78 Aligned_cols=47 Identities=19% Similarity=0.292 Sum_probs=35.8
Q ss_pred CCCcCccHHHHHHHHHhc-----cCCceEEEEEecCCCChHHHHHHHHhCCC
Q 002559 159 QGYPISSKSKFLRKLLEQ-----EETHQVILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 159 ~~~g~e~~~~~l~~LL~~-----~~~~~vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
..+|.++..+.+...+.. ....++++++|++|+||||||..+++...
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~ 103 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLE 103 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 567887766666555543 22368899999999999999999998764
No 241
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=94.49 E-value=0.58 Score=49.76 Aligned_cols=50 Identities=22% Similarity=0.377 Sum_probs=38.1
Q ss_pred CCCcCc---cHHHHHHHHHhccC-----CceEEEEEecCCCChHHHHHHHHhCCCCcc
Q 002559 159 QGYPIS---SKSKFLRKLLEQEE-----THQVILIVGLSGIGKSCLARQVASDPPERF 208 (908)
Q Consensus 159 ~~~g~e---~~~~~l~~LL~~~~-----~~~vV~I~GmgGiGKTtLA~~v~~~~~~~F 208 (908)
..+|.+ .+.++|.+.|++.. .++-|..+|++|.|||-+|+++++..+.-|
T Consensus 122 dViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp~ 179 (368)
T COG1223 122 DVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPL 179 (368)
T ss_pred hhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCce
Confidence 344655 35567777787643 288999999999999999999999876543
No 242
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.49 E-value=0.65 Score=47.87 Aligned_cols=26 Identities=35% Similarity=0.441 Sum_probs=22.9
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
-.+++|+|..|.|||||++.++....
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G~~~ 51 (195)
T PRK13541 26 SAITYIKGANGCGKSSLLRMIAGIMQ 51 (195)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 45999999999999999999987643
No 243
>PRK07667 uridine kinase; Provisional
Probab=94.49 E-value=0.054 Score=56.01 Aligned_cols=34 Identities=21% Similarity=0.382 Sum_probs=26.9
Q ss_pred HHHhc-cCCceEEEEEecCCCChHHHHHHHHhCCC
Q 002559 172 KLLEQ-EETHQVILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 172 ~LL~~-~~~~~vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
+.+.. .....+|+|.|.+|+||||+|..+.....
T Consensus 8 ~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~ 42 (193)
T PRK07667 8 NIMKKHKENRFILGIDGLSRSGKTTFVANLKENMK 42 (193)
T ss_pred HHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 44433 34468999999999999999999988654
No 244
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.48 E-value=0.63 Score=47.91 Aligned_cols=24 Identities=29% Similarity=0.430 Sum_probs=21.8
Q ss_pred ceEEEEEecCCCChHHHHHHHHhC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASD 203 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~ 203 (908)
-.+++|+|..|.|||||.+.++-.
T Consensus 33 Ge~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 33 GTLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 469999999999999999999964
No 245
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=94.47 E-value=0.032 Score=54.13 Aligned_cols=24 Identities=38% Similarity=0.599 Sum_probs=21.0
Q ss_pred EEEEEecCCCChHHHHHHHHhCCC
Q 002559 182 VILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 182 vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
+|.++|++|+||||+|+.+.....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
Confidence 588999999999999999986543
No 246
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=94.42 E-value=0.31 Score=49.95 Aligned_cols=26 Identities=27% Similarity=0.386 Sum_probs=22.7
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
-.+++|+|..|+|||||.+.++....
T Consensus 18 Ge~~~i~G~nGsGKSTLl~~i~G~~~ 43 (190)
T TIGR01166 18 GEVLALLGANGAGKSTLLLHLNGLLR 43 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 46899999999999999999987543
No 247
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=94.41 E-value=0.86 Score=47.99 Aligned_cols=26 Identities=27% Similarity=0.399 Sum_probs=22.9
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
-.+++|+|..|.|||||.+.++--..
T Consensus 34 Ge~~~l~G~nGsGKSTLl~~i~G~~~ 59 (224)
T TIGR02324 34 GECVALSGPSGAGKSTLLKSLYANYL 59 (224)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 46999999999999999999987654
No 248
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=94.40 E-value=0.45 Score=51.79 Aligned_cols=26 Identities=35% Similarity=0.532 Sum_probs=23.0
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
-.+++|+|+.|.|||||.+.++-...
T Consensus 50 Ge~~~liG~NGsGKSTLlk~L~Gl~~ 75 (264)
T PRK13546 50 GDVIGLVGINGSGKSTLSNIIGGSLS 75 (264)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCcC
Confidence 46899999999999999999997654
No 249
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.40 E-value=0.52 Score=49.25 Aligned_cols=25 Identities=32% Similarity=0.490 Sum_probs=22.3
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDP 204 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~ 204 (908)
-.+++|+|..|+|||||++.++--.
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 26 GEFLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4689999999999999999998754
No 250
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=94.39 E-value=0.096 Score=53.47 Aligned_cols=24 Identities=46% Similarity=0.630 Sum_probs=21.3
Q ss_pred EEEEEecCCCChHHHHHHHHhCCC
Q 002559 182 VILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 182 vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
.|.|.|.+|+||||+|+.+++...
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~ 25 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLG 25 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999998843
No 251
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.39 E-value=0.74 Score=48.00 Aligned_cols=26 Identities=31% Similarity=0.535 Sum_probs=22.9
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
-.+++|+|..|.|||||.+.++....
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G~~~ 53 (207)
T PRK13539 28 GEALVLTGPNGSGKTTLLRLIAGLLP 53 (207)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 46999999999999999999987643
No 252
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.38 E-value=0.49 Score=47.75 Aligned_cols=26 Identities=35% Similarity=0.350 Sum_probs=23.2
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
-.+++|.|..|.|||||.+.++.-..
T Consensus 28 G~~~~l~G~nGsGKstLl~~i~G~~~ 53 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLRLYD 53 (171)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 46899999999999999999987654
No 253
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=94.37 E-value=0.42 Score=53.34 Aligned_cols=182 Identities=15% Similarity=0.132 Sum_probs=93.6
Q ss_pred HHHHHHHHHhccCCceEEEEEecCCCChHHHHHHHHhCCC-C---ccccceEEEeeeeeeccccccCCcchHHHHHHHHH
Q 002559 166 KSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPP-E---RFVGGAVELGFGQWCSRAACNGSKSDYQKRLARKI 241 (908)
Q Consensus 166 ~~~~l~~LL~~~~~~~vV~I~GmgGiGKTtLA~~v~~~~~-~---~F~~~~f~~~v~~wv~~~~~~~s~~~~~~~l~~~i 241 (908)
.-+.+...+..+.-...+.++|+.|+||+++|..+++..- . .-+|+. |. .
T Consensus 11 ~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~-------------C~-----s-------- 64 (319)
T PRK06090 11 VWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGF-------------CH-----S-------- 64 (319)
T ss_pred HHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCC-------------CH-----H--------
Confidence 3445555565554577899999999999999999987432 1 111111 10 0
Q ss_pred HHHHHHhcccc----ccC--CCCCCHHHHHHHHHHHh-----ccCCeeEEEecCCch--hHHHHHhhhc---CCCcEEEE
Q 002559 242 SKFLVQIGFWK----KIK--DENSDLEYLCCLLQEAL-----YGKSILILLDDVWEQ--DIVERFAKLY---DNDCKYLV 305 (908)
Q Consensus 242 ~~~L~~lg~~~----~~~--~~~~~~~~l~~~l~~~L-----~~kr~LLVLDDV~~~--~~~e~l~~~~---~~gsrILV 305 (908)
+..+....+++ ... .....+++... +.+.+ .+++-++|+|+++.. ...+.+.+.+ ++++.+|+
T Consensus 65 C~~~~~g~HPD~~~i~p~~~~~~I~vdqiR~-l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL 143 (319)
T PRK06090 65 CELMQSGNHPDLHVIKPEKEGKSITVEQIRQ-CNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLL 143 (319)
T ss_pred HHHHHcCCCCCEEEEecCcCCCcCCHHHHHH-HHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEE
Confidence 00000000000 000 11123444332 22332 234568899999855 4567666544 45666666
Q ss_pred Eccch-hhhhh----ccccee-cCChhhHHHHHHHHhhhcccccCcchHHHHHHHHhHhCCchhhHhHhhhhhhccCCHH
Q 002559 306 TTRNE-AVYEI----TEAEKV-ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGHHPLTVAVMGKALRKELRSE 379 (908)
Q Consensus 306 TTR~~-~va~~----~~~~~~-~L~~~ea~~Lf~~~~~~~~~~~~~~l~~i~~~Iv~~cgGLPLAI~~ig~~L~~~~~~~ 379 (908)
+|.+. .+... +....+ +++.++..+.+.+. + .+ ....++..++|.|+...... ... ...
T Consensus 144 ~t~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~L~~~----~---~~----~~~~~l~l~~G~p~~A~~~~---~~~-~~~ 208 (319)
T PRK06090 144 VTHNQKRLLPTIVSRCQQWVVTPPSTAQAMQWLKGQ----G---IT----VPAYALKLNMGSPLKTLAMM---KEG-GLE 208 (319)
T ss_pred EECChhhChHHHHhcceeEeCCCCCHHHHHHHHHHc----C---Cc----hHHHHHHHcCCCHHHHHHHh---CCC-cHH
Confidence 55554 44432 222222 56777766654321 1 11 23567899999998665442 221 334
Q ss_pred HHHHHHHHhc
Q 002559 380 KWEKAITDLS 389 (908)
Q Consensus 380 eW~~~l~~L~ 389 (908)
.+..+++.+.
T Consensus 209 ~~~~~~~~l~ 218 (319)
T PRK06090 209 KYHKLERQLV 218 (319)
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 254
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=94.37 E-value=0.22 Score=55.94 Aligned_cols=39 Identities=21% Similarity=0.273 Sum_probs=26.3
Q ss_pred EEEEecCCCChHHHHHHHHhCCCCccccceEEEeeeeee
Q 002559 183 ILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWC 221 (908)
Q Consensus 183 V~I~GmgGiGKTtLA~~v~~~~~~~F~~~~f~~~v~~wv 221 (908)
+++.|++|+||||+++.+.+.....-...+.+++++..+
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i 40 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDII 40 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEcccccc
Confidence 678999999999999999977642111124455554443
No 255
>PRK03839 putative kinase; Provisional
Probab=94.37 E-value=0.029 Score=57.17 Aligned_cols=24 Identities=29% Similarity=0.571 Sum_probs=21.8
Q ss_pred EEEEEecCCCChHHHHHHHHhCCC
Q 002559 182 VILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 182 vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
.|.|.|++|+||||+|+.++++..
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999998864
No 256
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=94.35 E-value=0.66 Score=48.71 Aligned_cols=26 Identities=15% Similarity=0.364 Sum_probs=22.8
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
-.+++|+|..|+|||||.+.++.-..
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (220)
T cd03263 28 GEIFGLLGHNGAGKTTTLKMLTGELR 53 (220)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 46899999999999999999997543
No 257
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=94.35 E-value=0.69 Score=48.28 Aligned_cols=26 Identities=31% Similarity=0.517 Sum_probs=22.8
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
-.+++|+|..|+|||||.+.++-...
T Consensus 27 G~~~~i~G~nGsGKSTLl~~l~G~~~ 52 (214)
T cd03292 27 GEFVFLVGPSGAGKSTLLKLIYKEEL 52 (214)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 46899999999999999999987643
No 258
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.35 E-value=0.83 Score=47.99 Aligned_cols=57 Identities=16% Similarity=0.160 Sum_probs=40.0
Q ss_pred HHHHHHHhccCCeeEEEecCCchhHHHHHh-------hhcCCCcEEEEEccchhhhhhccccee
Q 002559 265 CCLLQEALYGKSILILLDDVWEQDIVERFA-------KLYDNDCKYLVTTRNEAVYEITEAEKV 321 (908)
Q Consensus 265 ~~~l~~~L~~kr~LLVLDDV~~~~~~e~l~-------~~~~~gsrILVTTR~~~va~~~~~~~~ 321 (908)
...+.+.+-=++-|.|||..++--+.+.+. ....+|+-+|+.|....++....++.+
T Consensus 152 R~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~v 215 (251)
T COG0396 152 RNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKV 215 (251)
T ss_pred HHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEE
Confidence 344445555577899999999776655544 233678889999999988887765544
No 259
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.34 E-value=0.77 Score=48.27 Aligned_cols=26 Identities=38% Similarity=0.489 Sum_probs=22.8
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
-.+++|+|..|+|||||++.++.-..
T Consensus 30 G~~~~i~G~nGsGKSTLl~~l~Gl~~ 55 (220)
T cd03293 30 GEFVALVGPSGCGKSTLLRIIAGLER 55 (220)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 36899999999999999999987643
No 260
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=94.33 E-value=0.088 Score=58.62 Aligned_cols=99 Identities=19% Similarity=0.144 Sum_probs=54.6
Q ss_pred HHHHHHh-cc-CCceEEEEEecCCCChHHHHHHHHhCCCCccccceEEEeeeeeeccccccCCcchHHHHHHHHHHHHHH
Q 002559 169 FLRKLLE-QE-ETHQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACNGSKSDYQKRLARKISKFLV 246 (908)
Q Consensus 169 ~l~~LL~-~~-~~~~vV~I~GmgGiGKTtLA~~v~~~~~~~F~~~~f~~~v~~wv~~~~~~~s~~~~~~~l~~~i~~~L~ 246 (908)
.++.+|. .. +.-+++-|+|++|+||||||.+++...... ...++|+|...- ... ..++.+.-.+.
T Consensus 42 ~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~~-g~~v~yId~E~~-----------~~~-~~a~~lGvd~~ 108 (321)
T TIGR02012 42 SLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEAQKA-GGTAAFIDAEHA-----------LDP-VYARKLGVDID 108 (321)
T ss_pred HHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHc-CCcEEEEcccch-----------hHH-HHHHHcCCCHH
Confidence 4556665 32 336799999999999999999987654322 244666665321 111 11222210011
Q ss_pred HhccccccCCCCCCHHHHHHHHHHHhc-cCCeeEEEecCC
Q 002559 247 QIGFWKKIKDENSDLEYLCCLLQEALY-GKSILILLDDVW 285 (908)
Q Consensus 247 ~lg~~~~~~~~~~~~~~l~~~l~~~L~-~kr~LLVLDDV~ 285 (908)
.+ ....+.+.++....+....+ +.--+||+|.|-
T Consensus 109 ~l-----~v~~p~~~eq~l~~~~~li~~~~~~lIVIDSv~ 143 (321)
T TIGR02012 109 NL-----LVSQPDTGEQALEIAETLVRSGAVDIIVVDSVA 143 (321)
T ss_pred He-----EEecCCCHHHHHHHHHHHhhccCCcEEEEcchh
Confidence 11 11122345555665555543 356789999985
No 261
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=94.33 E-value=0.47 Score=55.91 Aligned_cols=144 Identities=19% Similarity=0.321 Sum_probs=78.3
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCCCCccccceEEEeeeeeeccccccCCcchHHHHHHHHHHHHHHHhccccccCCCCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACNGSKSDYQKRLARKISKFLVQIGFWKKIKDENS 259 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~~~~F~~~~f~~~v~~wv~~~~~~~s~~~~~~~l~~~i~~~L~~lg~~~~~~~~~~ 259 (908)
+.=|.+||++|+|||-||++|+|.-.-+|- ++ -.++...+.. | .
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEag~NFi------sV-----------KGPELlNkYV----------G---------E 588 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEAGANFI------SV-----------KGPELLNKYV----------G---------E 588 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhccCceE------ee-----------cCHHHHHHHh----------h---------h
Confidence 556889999999999999999998776652 22 2222222111 1 1
Q ss_pred CHHHHHHHHHHHhccCCeeEEEecCCch-------------hHHHHHhhhcC-----CCcEEEEEccchhhhh--hcccc
Q 002559 260 DLEYLCCLLQEALYGKSILILLDDVWEQ-------------DIVERFAKLYD-----NDCKYLVTTRNEAVYE--ITEAE 319 (908)
Q Consensus 260 ~~~~l~~~l~~~L~~kr~LLVLDDV~~~-------------~~~e~l~~~~~-----~gsrILVTTR~~~va~--~~~~~ 319 (908)
+.......+.+.-..-++.|.||.++.. ..++.|+.-++ .|--||-.|-.+++.. ...+.
T Consensus 589 SErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPG 668 (802)
T KOG0733|consen 589 SERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPG 668 (802)
T ss_pred HHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCC
Confidence 2222333344444457899999999743 12344432222 2445666666565543 33332
Q ss_pred e------ecC-ChhhHHHHHHHHhhhcc--cccCcchHHHHHHHHhHhCCc
Q 002559 320 K------VEL-SKDDIMEISKSILLYHS--LLAEEELPAAAESLLERCGHH 361 (908)
Q Consensus 320 ~------~~L-~~~ea~~Lf~~~~~~~~--~~~~~~l~~i~~~Iv~~cgGL 361 (908)
+ ++| +.+|-.++++.....+. ...+-++.+++. ..+|.|.
T Consensus 669 RlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~--~~~c~gf 717 (802)
T KOG0733|consen 669 RLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIAR--NTKCEGF 717 (802)
T ss_pred ccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhh--cccccCC
Confidence 2 255 45566777777665322 222334555543 2356564
No 262
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=94.33 E-value=0.5 Score=52.24 Aligned_cols=49 Identities=22% Similarity=0.194 Sum_probs=33.1
Q ss_pred HHHHHhccCCeeEEEecCCch-------hHHHHHhhhcCCC-cEEEEEccchhhhhh
Q 002559 267 LLQEALYGKSILILLDDVWEQ-------DIVERFAKLYDND-CKYLVTTRNEAVYEI 315 (908)
Q Consensus 267 ~l~~~L~~kr~LLVLDDV~~~-------~~~e~l~~~~~~g-srILVTTR~~~va~~ 315 (908)
.+...|-+++=++|||.--+- +.|+.+......| ..|++||....-+..
T Consensus 146 ~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~ 202 (293)
T COG1131 146 SIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEE 202 (293)
T ss_pred HHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHH
Confidence 455566778889999997532 3355555544555 689999998765544
No 263
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.31 E-value=0.8 Score=48.13 Aligned_cols=25 Identities=16% Similarity=0.316 Sum_probs=22.4
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDP 204 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~ 204 (908)
-.+++|+|..|+|||||.+.++-..
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (220)
T cd03265 26 GEIFGLLGPNGAGKTTTIKMLTTLL 50 (220)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4689999999999999999998754
No 264
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.30 E-value=0.43 Score=48.66 Aligned_cols=26 Identities=35% Similarity=0.424 Sum_probs=22.9
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
-.+++|+|..|+|||||.+.++.-..
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 50 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQLI 50 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcCCC
Confidence 46999999999999999999987554
No 265
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=94.28 E-value=0.16 Score=58.95 Aligned_cols=27 Identities=37% Similarity=0.482 Sum_probs=23.1
Q ss_pred CceEEEEEecCCCChHHHHHHHHhCCC
Q 002559 179 THQVILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 179 ~~~vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
.+.++.++|.+|+||||.|..++....
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~ 124 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLK 124 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 368999999999999999888887643
No 266
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=94.27 E-value=0.2 Score=59.51 Aligned_cols=49 Identities=20% Similarity=0.228 Sum_probs=33.8
Q ss_pred HHHHHhcc-CCceEEEEEecCCCChHHHHHHHHhCCCCccccceEEEeee
Q 002559 170 LRKLLEQE-ETHQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFG 218 (908)
Q Consensus 170 l~~LL~~~-~~~~vV~I~GmgGiGKTtLA~~v~~~~~~~F~~~~f~~~v~ 218 (908)
+..+|..+ ..-+++.|.|.+|+||||||.+++..-..++...++|+.+.
T Consensus 10 LD~il~GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~e 59 (484)
T TIGR02655 10 FDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFE 59 (484)
T ss_pred HHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 44455543 33689999999999999999998765333333456776653
No 267
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=94.27 E-value=0.71 Score=49.81 Aligned_cols=26 Identities=31% Similarity=0.465 Sum_probs=22.9
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
-.+++|+|..|.|||||++.++-...
T Consensus 30 Ge~~~I~G~NGsGKSTLl~~i~Gl~~ 55 (251)
T PRK09544 30 GKILTLLGPNGAGKSTLVRVVLGLVA 55 (251)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 46899999999999999999987543
No 268
>PRK05480 uridine/cytidine kinase; Provisional
Probab=94.26 E-value=0.035 Score=58.02 Aligned_cols=26 Identities=31% Similarity=0.378 Sum_probs=23.9
Q ss_pred CceEEEEEecCCCChHHHHHHHHhCC
Q 002559 179 THQVILIVGLSGIGKSCLARQVASDP 204 (908)
Q Consensus 179 ~~~vV~I~GmgGiGKTtLA~~v~~~~ 204 (908)
...+|+|.|.+|+||||||+.++..+
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 46799999999999999999999876
No 269
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=94.25 E-value=0.18 Score=60.34 Aligned_cols=49 Identities=22% Similarity=0.266 Sum_probs=34.6
Q ss_pred HHHHHHhcc-CCceEEEEEecCCCChHHHHHHHHhCCCCccccceEEEee
Q 002559 169 FLRKLLEQE-ETHQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGF 217 (908)
Q Consensus 169 ~l~~LL~~~-~~~~vV~I~GmgGiGKTtLA~~v~~~~~~~F~~~~f~~~v 217 (908)
-+..+|..+ +.-+++.|.|.+|+|||+||.+++.....++...++|+++
T Consensus 19 ~LD~~l~GG~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ 68 (509)
T PRK09302 19 GFDDITHGGLPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTF 68 (509)
T ss_pred hHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEc
Confidence 344455432 3368999999999999999999876554444455777665
No 270
>PRK01184 hypothetical protein; Provisional
Probab=94.24 E-value=0.27 Score=50.12 Aligned_cols=22 Identities=32% Similarity=0.702 Sum_probs=18.5
Q ss_pred eEEEEEecCCCChHHHHHHHHhC
Q 002559 181 QVILIVGLSGIGKSCLARQVASD 203 (908)
Q Consensus 181 ~vV~I~GmgGiGKTtLA~~v~~~ 203 (908)
.+|+|+|++|+||||+|+ ++..
T Consensus 2 ~~i~l~G~~GsGKsT~a~-~~~~ 23 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK-IARE 23 (184)
T ss_pred cEEEEECCCCCCHHHHHH-HHHH
Confidence 489999999999999987 4443
No 271
>PRK10908 cell division protein FtsE; Provisional
Probab=94.23 E-value=0.76 Score=48.38 Aligned_cols=26 Identities=27% Similarity=0.422 Sum_probs=22.8
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
-.+++|+|..|+|||||.+.++-...
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G~~~ 53 (222)
T PRK10908 28 GEMAFLTGHSGAGKSTLLKLICGIER 53 (222)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 46999999999999999999986543
No 272
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=94.22 E-value=0.23 Score=51.54 Aligned_cols=39 Identities=23% Similarity=0.411 Sum_probs=28.8
Q ss_pred cHHHHHHHHHhccCCceEEEEEecCCCChHHHHHHHHhCCC
Q 002559 165 SKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 165 ~~~~~l~~LL~~~~~~~vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
+..+.+..++... -+++.|.|.+|+||||+...+.....
T Consensus 5 ~Q~~a~~~~l~~~--~~~~~l~G~aGtGKT~~l~~~~~~~~ 43 (196)
T PF13604_consen 5 EQREAVRAILTSG--DRVSVLQGPAGTGKTTLLKALAEALE 43 (196)
T ss_dssp HHHHHHHHHHHCT--CSEEEEEESTTSTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC--CeEEEEEECCCCCHHHHHHHHHHHHH
Confidence 3455666666543 36788999999999999988876544
No 273
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=94.20 E-value=0.67 Score=48.28 Aligned_cols=26 Identities=38% Similarity=0.466 Sum_probs=22.7
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
-.+++|+|..|+|||||++.++-...
T Consensus 27 G~~~~l~G~nGsGKSTLl~~l~G~~~ 52 (211)
T cd03225 27 GEFVLIVGPNGSGKSTLLRLLNGLLG 52 (211)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 46899999999999999999986543
No 274
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=94.20 E-value=0.47 Score=53.51 Aligned_cols=84 Identities=12% Similarity=0.185 Sum_probs=48.2
Q ss_pred cCCeeEEEecCCch--hHHHHHhhhc---CCCcEEEEEccc-hhhhhh----ccccee-cCChhhHHHHHHHHhhhcccc
Q 002559 274 GKSILILLDDVWEQ--DIVERFAKLY---DNDCKYLVTTRN-EAVYEI----TEAEKV-ELSKDDIMEISKSILLYHSLL 342 (908)
Q Consensus 274 ~kr~LLVLDDV~~~--~~~e~l~~~~---~~gsrILVTTR~-~~va~~----~~~~~~-~L~~~ea~~Lf~~~~~~~~~~ 342 (908)
+++-++|+|+++.. +..+.++..+ ++++.+|++|.+ ..+... +....+ +++.++..+.+.+. +.
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~----~~- 205 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQ----GV- 205 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHc----CC-
Confidence 45568889999854 5677776544 456655555544 444432 222223 67777776655432 11
Q ss_pred cCcchHHHHHHHHhHhCCchhhHhHh
Q 002559 343 AEEELPAAAESLLERCGHHPLTVAVM 368 (908)
Q Consensus 343 ~~~~l~~i~~~Iv~~cgGLPLAI~~i 368 (908)
+. ...++..++|.|+....+
T Consensus 206 --~~----~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 206 --AD----ADALLAEAGGAPLAALAL 225 (342)
T ss_pred --Ch----HHHHHHHcCCCHHHHHHH
Confidence 11 234578899999754433
No 275
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=94.20 E-value=0.86 Score=50.57 Aligned_cols=49 Identities=16% Similarity=0.161 Sum_probs=32.3
Q ss_pred HHHHHHhccCCeeEEEecCCch---h----HHHHHhhhcCCCcEEEEEccchhhhh
Q 002559 266 CLLQEALYGKSILILLDDVWEQ---D----IVERFAKLYDNDCKYLVTTRNEAVYE 314 (908)
Q Consensus 266 ~~l~~~L~~kr~LLVLDDV~~~---~----~~e~l~~~~~~gsrILVTTR~~~va~ 314 (908)
-.+...+-.++-+|+||..-.. . .|+.+...-..|..||+||.+.+...
T Consensus 133 v~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~ 188 (302)
T TIGR01188 133 LDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEAD 188 (302)
T ss_pred HHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHH
Confidence 3455566678889999998643 2 23444443345788999999886544
No 276
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=94.19 E-value=0.67 Score=48.83 Aligned_cols=25 Identities=28% Similarity=0.392 Sum_probs=22.3
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDP 204 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~ 204 (908)
-.+++|+|..|.|||||.+.++-..
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (223)
T TIGR03740 26 NSVYGLLGPNGAGKSTLLKMITGIL 50 (223)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4689999999999999999998754
No 277
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=94.16 E-value=0.91 Score=47.95 Aligned_cols=26 Identities=35% Similarity=0.396 Sum_probs=22.9
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
-.+++|+|..|+|||||++.++--..
T Consensus 36 Ge~~~i~G~nGsGKSTLl~~i~Gl~~ 61 (228)
T PRK10584 36 GETIALIGESGSGKSTLLAILAGLDD 61 (228)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 47999999999999999999987543
No 278
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.16 E-value=0.79 Score=48.59 Aligned_cols=26 Identities=35% Similarity=0.441 Sum_probs=22.9
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
-.+++|+|..|+|||||.+.++....
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~G~~~ 56 (233)
T cd03258 31 GEIFGIIGRSGAGKSTLIRCINGLER 56 (233)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 46999999999999999999987654
No 279
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=94.15 E-value=0.054 Score=57.54 Aligned_cols=37 Identities=27% Similarity=0.352 Sum_probs=29.0
Q ss_pred HHHHHhccCCceEEEEEecCCCChHHHHHHHHhCCCC
Q 002559 170 LRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPPE 206 (908)
Q Consensus 170 l~~LL~~~~~~~vV~I~GmgGiGKTtLA~~v~~~~~~ 206 (908)
+..+........+|+|.|++|+|||||++.+....+.
T Consensus 23 ~~~~~~~~~~~~iigi~G~~GsGKTTl~~~L~~~l~~ 59 (229)
T PRK09270 23 LAALQAEPQRRTIVGIAGPPGAGKSTLAEFLEALLQQ 59 (229)
T ss_pred HHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 3333344456889999999999999999999987664
No 280
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=94.13 E-value=0.88 Score=49.16 Aligned_cols=26 Identities=31% Similarity=0.553 Sum_probs=22.8
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
-.+++|+|..|+|||||++.++-..+
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 52 (255)
T PRK11248 27 GELLVVLGPSGCGKTTLLNLIAGFVP 52 (255)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 46899999999999999999987543
No 281
>PRK09354 recA recombinase A; Provisional
Probab=94.12 E-value=0.11 Score=58.39 Aligned_cols=99 Identities=18% Similarity=0.113 Sum_probs=55.7
Q ss_pred HHHHHHh-cc-CCceEEEEEecCCCChHHHHHHHHhCCCCccccceEEEeeeeeeccccccCCcchHHHHHHHHHHHHHH
Q 002559 169 FLRKLLE-QE-ETHQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACNGSKSDYQKRLARKISKFLV 246 (908)
Q Consensus 169 ~l~~LL~-~~-~~~~vV~I~GmgGiGKTtLA~~v~~~~~~~F~~~~f~~~v~~wv~~~~~~~s~~~~~~~l~~~i~~~L~ 246 (908)
.+..+|. .+ +.-+++-|+|++|+||||||.+++...... ...++|++...- ... ..++.+.-.+.
T Consensus 47 ~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~~~~-G~~~~yId~E~s-----------~~~-~~a~~lGvdld 113 (349)
T PRK09354 47 ALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKA-GGTAAFIDAEHA-----------LDP-VYAKKLGVDID 113 (349)
T ss_pred HHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHc-CCcEEEECCccc-----------hHH-HHHHHcCCCHH
Confidence 4566666 32 236789999999999999999987654322 345677765321 111 12222211011
Q ss_pred HhccccccCCCCCCHHHHHHHHHHHhc-cCCeeEEEecCC
Q 002559 247 QIGFWKKIKDENSDLEYLCCLLQEALY-GKSILILLDDVW 285 (908)
Q Consensus 247 ~lg~~~~~~~~~~~~~~l~~~l~~~L~-~kr~LLVLDDV~ 285 (908)
.+- ...+.+.++....+...++ +.--+||+|-|-
T Consensus 114 ~ll-----i~qp~~~Eq~l~i~~~li~s~~~~lIVIDSva 148 (349)
T PRK09354 114 NLL-----VSQPDTGEQALEIADTLVRSGAVDLIVVDSVA 148 (349)
T ss_pred HeE-----EecCCCHHHHHHHHHHHhhcCCCCEEEEeChh
Confidence 111 1122345565665555554 356789999985
No 282
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=94.12 E-value=0.11 Score=58.05 Aligned_cols=48 Identities=21% Similarity=0.186 Sum_probs=33.6
Q ss_pred HHHHHHh-cc-CCceEEEEEecCCCChHHHHHHHHhCCCCccccceEEEee
Q 002559 169 FLRKLLE-QE-ETHQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGF 217 (908)
Q Consensus 169 ~l~~LL~-~~-~~~~vV~I~GmgGiGKTtLA~~v~~~~~~~F~~~~f~~~v 217 (908)
.++.+|. .+ +.-+++-|+|++|+||||||.+++...... ...++|+|.
T Consensus 42 ~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~~-g~~~vyId~ 91 (325)
T cd00983 42 SLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQKL-GGTVAFIDA 91 (325)
T ss_pred HHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHc-CCCEEEECc
Confidence 4566665 32 336789999999999999999987654322 245667665
No 283
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.12 E-value=0.45 Score=51.20 Aligned_cols=26 Identities=35% Similarity=0.496 Sum_probs=23.1
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
-.+++|+|..|+|||||.+.++....
T Consensus 25 Ge~~~i~G~NGsGKSTLlk~L~G~~~ 50 (246)
T cd03237 25 SEVIGILGPNGIGKTTFIKMLAGVLK 50 (246)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 46899999999999999999987654
No 284
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=94.12 E-value=0.46 Score=54.50 Aligned_cols=114 Identities=16% Similarity=0.126 Sum_probs=68.2
Q ss_pred ccCCCcCccHHHHHHHHHhcc---CCceEEEEEecCCCChHHHHHHHHhCCCCcccc-ceEEEeeeeeeccccccCCcch
Q 002559 157 AEQGYPISSKSKFLRKLLEQE---ETHQVILIVGLSGIGKSCLARQVASDPPERFVG-GAVELGFGQWCSRAACNGSKSD 232 (908)
Q Consensus 157 ~~~~~g~e~~~~~l~~LL~~~---~~~~vV~I~GmgGiGKTtLA~~v~~~~~~~F~~-~~f~~~v~~wv~~~~~~~s~~~ 232 (908)
+....|++.+++.+..++... .....+=|.|-+|.|||.+-..++.+....... ..++++ |- +. .
T Consensus 149 p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~in---------c~-sl-~ 217 (529)
T KOG2227|consen 149 PGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYIN---------CT-SL-T 217 (529)
T ss_pred CCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEe---------ec-cc-c
Confidence 455668999999999887652 236778899999999999999999887644332 223332 21 11 1
Q ss_pred HHHHHHHHHHHHHHHhccccccCCCCCCHHHHHHHHHHHhccC--CeeEEEecCCch
Q 002559 233 YQKRLARKISKFLVQIGFWKKIKDENSDLEYLCCLLQEALYGK--SILILLDDVWEQ 287 (908)
Q Consensus 233 ~~~~l~~~i~~~L~~lg~~~~~~~~~~~~~~l~~~l~~~L~~k--r~LLVLDDV~~~ 287 (908)
....++..|...+.+.- .......+....+.....+. -+|+|+|..+..
T Consensus 218 ~~~aiF~kI~~~~~q~~------~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L 268 (529)
T KOG2227|consen 218 EASAIFKKIFSSLLQDL------VSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHL 268 (529)
T ss_pred chHHHHHHHHHHHHHHh------cCCchhHHHHHHHHHHHhcccceEEEEechhhHH
Confidence 12234444444332211 11112244455555555553 589999998754
No 285
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=94.12 E-value=0.7 Score=55.02 Aligned_cols=42 Identities=26% Similarity=0.429 Sum_probs=33.3
Q ss_pred ccHHHHHHHHHhcc----CCceEEEEEecCCCChHHHHHHHHhCCC
Q 002559 164 SSKSKFLRKLLEQE----ETHQVILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 164 e~~~~~l~~LL~~~----~~~~vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
..+.+.++.+|... ...+++.+.|++|+||||.++.+++...
T Consensus 25 kkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg 70 (519)
T PF03215_consen 25 KKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELG 70 (519)
T ss_pred HHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhC
Confidence 35777777777642 2367999999999999999999998764
No 286
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.12 E-value=0.13 Score=60.01 Aligned_cols=110 Identities=22% Similarity=0.343 Sum_probs=99.9
Q ss_pred HHHHHHHHhCCCchhHHHHhhhhhHHHHhhcchhhHHHHhccchHHHHHHHhhccCCCCcccchhhHHHHHHhhhcCCch
Q 002559 784 FEDVIHRLLDGDNKQVQGATQDLIPFLEKAGELKIRDMIIKSPLIAKLSELLQYAHPEQNSVRSESAFLLTKLACAGGEP 863 (908)
Q Consensus 784 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 863 (908)
++..+.++...|..+.++|.+.+--+..+-.+|.|...|-. ..+.+|.+.|. ...++.++-|+|+.|++.| +|.+-
T Consensus 68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~-G~v~~lV~~l~--~~~~~~lq~eAAWaLTnIA-sgtse 143 (514)
T KOG0166|consen 68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQS-GVVPRLVEFLS--RDDNPTLQFEAAWALTNIA-SGTSE 143 (514)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHc-CcHHHHHHHHc--cCCChhHHHHHHHHHHHHh-cCchh
Confidence 78899999999999999999999999999999999998877 99999999995 3446788999999999999 89999
Q ss_pred HHHHHhhcCChHHHHHhhccCcchhhhhcchhhH
Q 002559 864 CIKKFLEYDIIPELVKMMQCCVPEIQDSAYAAPD 897 (908)
Q Consensus 864 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 897 (908)
--+.++++|.||-+|.+.+...+++++-|--||-
T Consensus 144 ~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALg 177 (514)
T KOG0166|consen 144 QTKVVVDAGAVPIFIQLLSSPSADVREQAVWALG 177 (514)
T ss_pred hccccccCCchHHHHHHhcCCcHHHHHHHHHHHh
Confidence 9999999999999999999999999998877763
No 287
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=94.11 E-value=0.38 Score=50.80 Aligned_cols=58 Identities=14% Similarity=0.219 Sum_probs=38.9
Q ss_pred CHHHHHHHHHHHhccCCeeEEEecCC---ch---h-HHHHHhhhc-CCCcEEEEEccchhhhhhcc
Q 002559 260 DLEYLCCLLQEALYGKSILILLDDVW---EQ---D-IVERFAKLY-DNDCKYLVTTRNEAVYEITE 317 (908)
Q Consensus 260 ~~~~l~~~l~~~L~~kr~LLVLDDV~---~~---~-~~e~l~~~~-~~gsrILVTTR~~~va~~~~ 317 (908)
.-++..-.+.+.|-..+-+|+.|.-- |. + .++.+...- ..|..||+.|.+..++..+.
T Consensus 145 GGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~d 210 (226)
T COG1136 145 GGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYAD 210 (226)
T ss_pred HHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCC
Confidence 44455556777888888899999763 11 2 233333322 34889999999999988654
No 288
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=94.09 E-value=0.12 Score=56.71 Aligned_cols=26 Identities=31% Similarity=0.438 Sum_probs=22.7
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
.++++|+|++|+||||++..++....
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~ 219 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFV 219 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999998887654
No 289
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=94.09 E-value=1.1 Score=46.86 Aligned_cols=26 Identities=35% Similarity=0.443 Sum_probs=23.0
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
-.+++|.|..|+|||||++.++-...
T Consensus 24 Ge~~~i~G~nGsGKSTLl~~l~G~~~ 49 (213)
T TIGR01277 24 GEIVAIMGPSGAGKSTLLNLIAGFIE 49 (213)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 47899999999999999999987653
No 290
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=94.08 E-value=0.95 Score=47.00 Aligned_cols=26 Identities=31% Similarity=0.457 Sum_probs=22.9
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
-.+++|+|..|+|||||.+.++.-..
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 51 (205)
T cd03226 26 GEIIALTGKNGAGKTTLAKILAGLIK 51 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 46899999999999999999987543
No 291
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=94.06 E-value=0.32 Score=51.49 Aligned_cols=48 Identities=21% Similarity=0.178 Sum_probs=31.1
Q ss_pred HHHHHHhcc-CCceEEEEEecCCCChHHHHHHHHhCCCCccccceEEEee
Q 002559 169 FLRKLLEQE-ETHQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGF 217 (908)
Q Consensus 169 ~l~~LL~~~-~~~~vV~I~GmgGiGKTtLA~~v~~~~~~~F~~~~f~~~v 217 (908)
-+..++..+ ..-.++.|.|.+|+||||||..++.....+ ...++|++.
T Consensus 8 ~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~-g~~~~~is~ 56 (229)
T TIGR03881 8 GLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRD-GDPVIYVTT 56 (229)
T ss_pred hHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHHHhc-CCeEEEEEc
Confidence 344555332 235799999999999999999876533222 234566554
No 292
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=94.05 E-value=0.33 Score=59.65 Aligned_cols=29 Identities=34% Similarity=0.598 Sum_probs=24.2
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCCCCcc
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDPPERF 208 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~~~~F 208 (908)
.+-|.++|++|+|||++|+.++......|
T Consensus 185 ~~gill~G~~G~GKt~~~~~~a~~~~~~f 213 (644)
T PRK10733 185 PKGVLMVGPPGTGKTLLAKAIAGEAKVPF 213 (644)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHcCCCE
Confidence 34589999999999999999998765443
No 293
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=94.05 E-value=1.1 Score=48.09 Aligned_cols=25 Identities=36% Similarity=0.482 Sum_probs=22.1
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDP 204 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~ 204 (908)
-.+++|+|..|+|||||++.++-..
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~l~G~~ 53 (250)
T PRK11264 29 GEVVAIIGPSGSGKTTLLRCINLLE 53 (250)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4689999999999999999998654
No 294
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=94.05 E-value=0.24 Score=53.84 Aligned_cols=117 Identities=18% Similarity=0.188 Sum_probs=65.7
Q ss_pred cHHHHHHHHHhccCCceEEEEEecCCCChHHHHHHHHhCCCCccccceEEEeeeeeeccccccCCcchHHHHHHHHHHHH
Q 002559 165 SKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACNGSKSDYQKRLARKISKF 244 (908)
Q Consensus 165 ~~~~~l~~LL~~~~~~~vV~I~GmgGiGKTtLA~~v~~~~~~~F~~~~f~~~v~~wv~~~~~~~s~~~~~~~l~~~i~~~ 244 (908)
+..+.+..++... -.+|.|.|..|+||||++..+.+..... ...++.+.= ..+.... .+
T Consensus 67 ~~~~~l~~~~~~~--~GlilisG~tGSGKTT~l~all~~i~~~-~~~iitiEd-----------p~E~~~~----~~--- 125 (264)
T cd01129 67 ENLEIFRKLLEKP--HGIILVTGPTGSGKTTTLYSALSELNTP-EKNIITVED-----------PVEYQIP----GI--- 125 (264)
T ss_pred HHHHHHHHHHhcC--CCEEEEECCCCCcHHHHHHHHHhhhCCC-CCeEEEECC-----------CceecCC----Cc---
Confidence 4555666666543 3589999999999999999887665421 112221100 0000000 00
Q ss_pred HHHhccccccCCCCCCHHHHHHHHHHHhccCCeeEEEecCCchhHHHHHhhhcCCCcEEEEEccc
Q 002559 245 LVQIGFWKKIKDENSDLEYLCCLLQEALYGKSILILLDDVWEQDIVERFAKLYDNDCKYLVTTRN 309 (908)
Q Consensus 245 L~~lg~~~~~~~~~~~~~~l~~~l~~~L~~kr~LLVLDDV~~~~~~e~l~~~~~~gsrILVTTR~ 309 (908)
.+.. ..... .......++..|+...=.|+++++.+.+....+......|..++-|..-
T Consensus 126 -~q~~----v~~~~--~~~~~~~l~~~lR~~PD~i~vgEiR~~e~a~~~~~aa~tGh~v~tTlHa 183 (264)
T cd01129 126 -NQVQ----VNEKA--GLTFARGLRAILRQDPDIIMVGEIRDAETAEIAVQAALTGHLVLSTLHT 183 (264)
T ss_pred -eEEE----eCCcC--CcCHHHHHHHHhccCCCEEEeccCCCHHHHHHHHHHHHcCCcEEEEecc
Confidence 0000 01111 1124556777788888899999999998877665545556554444433
No 295
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.05 E-value=0.7 Score=49.52 Aligned_cols=25 Identities=28% Similarity=0.445 Sum_probs=22.1
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDP 204 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~ 204 (908)
-.+++|+|..|.|||||.+.++-..
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (246)
T PRK14269 28 NKITALIGASGCGKSTFLRCFNRMN 52 (246)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccc
Confidence 4689999999999999999998643
No 296
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=94.04 E-value=0.31 Score=50.94 Aligned_cols=22 Identities=27% Similarity=0.554 Sum_probs=20.0
Q ss_pred EEEEecCCCChHHHHHHHHhCC
Q 002559 183 ILIVGLSGIGKSCLARQVASDP 204 (908)
Q Consensus 183 V~I~GmgGiGKTtLA~~v~~~~ 204 (908)
|.|.|++|+||||+|+.++...
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~ 23 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKY 23 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 6799999999999999998765
No 297
>PRK00131 aroK shikimate kinase; Reviewed
Probab=94.03 E-value=0.041 Score=55.16 Aligned_cols=26 Identities=31% Similarity=0.500 Sum_probs=23.4
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
...|.|+|++|+||||+|+.++....
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l~ 29 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRLG 29 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 45899999999999999999998864
No 298
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.02 E-value=0.6 Score=48.72 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=21.1
Q ss_pred EEEEEecCCCChHHHHHHHHhCC
Q 002559 182 VILIVGLSGIGKSCLARQVASDP 204 (908)
Q Consensus 182 vV~I~GmgGiGKTtLA~~v~~~~ 204 (908)
+++|+|..|+|||||++.++.-.
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLT 49 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCC
Confidence 89999999999999999998654
No 299
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=94.01 E-value=0.96 Score=47.19 Aligned_cols=26 Identities=27% Similarity=0.447 Sum_probs=22.7
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
-.+++|.|..|+|||||.+.++....
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G~~~ 51 (213)
T cd03301 26 GEFVVLLGPSGCGKTTTLRMIAGLEE 51 (213)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 46899999999999999999997643
No 300
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=94.01 E-value=0.04 Score=46.87 Aligned_cols=23 Identities=43% Similarity=0.609 Sum_probs=20.9
Q ss_pred EEEEEecCCCChHHHHHHHHhCC
Q 002559 182 VILIVGLSGIGKSCLARQVASDP 204 (908)
Q Consensus 182 vV~I~GmgGiGKTtLA~~v~~~~ 204 (908)
+|+|.|.+|+||||+|+.+.+..
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999875
No 301
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.00 E-value=0.66 Score=48.52 Aligned_cols=26 Identities=42% Similarity=0.449 Sum_probs=23.1
Q ss_pred CceEEEEEecCCCChHHHHHHHHhCCC
Q 002559 179 THQVILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 179 ~~~vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
. .+++|+|..|+|||||++.++.-..
T Consensus 23 ~-e~~~i~G~nGsGKSTLl~~l~G~~~ 48 (214)
T cd03297 23 E-EVTGIFGASGAGKSTLLRCIAGLEK 48 (214)
T ss_pred c-eeEEEECCCCCCHHHHHHHHhCCCC
Confidence 5 8999999999999999999986543
No 302
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.00 E-value=1 Score=48.34 Aligned_cols=25 Identities=32% Similarity=0.384 Sum_probs=22.3
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDP 204 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~ 204 (908)
-.+++|+|..|+|||||++.++-..
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~i~G~~ 53 (250)
T PRK14247 29 NTITALMGPSGSGKSTLLRVFNRLI 53 (250)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccC
Confidence 4689999999999999999998654
No 303
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=93.98 E-value=0.21 Score=54.08 Aligned_cols=49 Identities=33% Similarity=0.324 Sum_probs=34.3
Q ss_pred HHHHHHhcc-CCceEEEEEecCCCChHHHHHHHHhCCC-----CccccceEEEee
Q 002559 169 FLRKLLEQE-ETHQVILIVGLSGIGKSCLARQVASDPP-----ERFVGGAVELGF 217 (908)
Q Consensus 169 ~l~~LL~~~-~~~~vV~I~GmgGiGKTtLA~~v~~~~~-----~~F~~~~f~~~v 217 (908)
.++.+|..+ ..-.++=|+|.+|+|||+|+..++-... ......++|+|-
T Consensus 26 ~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidT 80 (256)
T PF08423_consen 26 SLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDT 80 (256)
T ss_dssp HHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEES
T ss_pred HHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeC
Confidence 566777543 2256889999999999999988864322 223566888775
No 304
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=93.96 E-value=0.046 Score=57.09 Aligned_cols=27 Identities=33% Similarity=0.356 Sum_probs=23.7
Q ss_pred CceEEEEEecCCCChHHHHHHHHhCCC
Q 002559 179 THQVILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 179 ~~~vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
...+|+|+|++|+||||||+.++....
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 357999999999999999999987654
No 305
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=93.96 E-value=0.33 Score=44.90 Aligned_cols=108 Identities=22% Similarity=0.254 Sum_probs=84.3
Q ss_pred HHHHHHHHhCCCchhHHHHhhhhhHHHHhhcchhhHHHHhccchHHHHHHHhhccCCCCcccchhhHHHHHHhhhcCCch
Q 002559 784 FEDVIHRLLDGDNKQVQGATQDLIPFLEKAGELKIRDMIIKSPLIAKLSELLQYAHPEQNSVRSESAFLLTKLACAGGEP 863 (908)
Q Consensus 784 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 863 (908)
+..++..+.+++..-...++.-|.-+... ++.....++....++.|..+|+. .+.+|+..++.++..++ .++++
T Consensus 9 i~~l~~~l~~~~~~~~~~a~~~l~~l~~~--~~~~~~~~~~~~~i~~l~~~l~~---~~~~v~~~a~~~L~~l~-~~~~~ 82 (120)
T cd00020 9 LPALVSLLSSSDENVQREAAWALSNLSAG--NNDNIQAVVEAGGLPALVQLLKS---EDEEVVKAALWALRNLA-AGPED 82 (120)
T ss_pred hHHHHHHHHcCCHHHHHHHHHHHHHHhcC--CHHHHHHHHHCCChHHHHHHHhC---CCHHHHHHHHHHHHHHc-cCcHH
Confidence 56667777777766666666666555543 37777888889999999999976 36799999999999997 67778
Q ss_pred HHHHHhhcCChHHHHHhhccCcchhhhhcchhhH
Q 002559 864 CIKKFLEYDIIPELVKMMQCCVPEIQDSAYAAPD 897 (908)
Q Consensus 864 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 897 (908)
...++.+.|+++.|+..++-...+.++.+-.+|.
T Consensus 83 ~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~ 116 (120)
T cd00020 83 NKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALS 116 (120)
T ss_pred HHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHH
Confidence 8999999999999999998776666665555543
No 306
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=93.95 E-value=1.2 Score=47.96 Aligned_cols=26 Identities=38% Similarity=0.423 Sum_probs=23.0
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
-.+++|+|..|+|||||++.++....
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~i~G~~~ 56 (257)
T PRK10619 31 GDVISIIGSSGSGKSTFLRCINFLEK 56 (257)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 46899999999999999999987654
No 307
>PRK00625 shikimate kinase; Provisional
Probab=93.92 E-value=0.039 Score=56.02 Aligned_cols=24 Identities=25% Similarity=0.481 Sum_probs=21.6
Q ss_pred EEEEEecCCCChHHHHHHHHhCCC
Q 002559 182 VILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 182 vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
.|.++||+|+||||+++.++++..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999998765
No 308
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=93.92 E-value=0.64 Score=48.58 Aligned_cols=26 Identities=23% Similarity=0.418 Sum_probs=22.7
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
-.+++|+|..|+|||||++.++.-..
T Consensus 28 G~~~~l~G~nGsGKSTLl~~i~Gl~~ 53 (214)
T TIGR02673 28 GEFLFLTGPSGAGKTTLLKLLYGALT 53 (214)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 46999999999999999999987543
No 309
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=93.86 E-value=0.29 Score=52.12 Aligned_cols=38 Identities=16% Similarity=0.281 Sum_probs=28.3
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCCCCccccceEEEee
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGF 217 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~~~~F~~~~f~~~v 217 (908)
-.++.|.|.+|+|||+++..++.+...+....++|+++
T Consensus 13 G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~ 50 (242)
T cd00984 13 GDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSL 50 (242)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeC
Confidence 46999999999999999999877654332334666554
No 310
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=93.86 E-value=0.18 Score=54.79 Aligned_cols=37 Identities=30% Similarity=0.306 Sum_probs=27.7
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCCCCccccceEEEee
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGF 217 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~~~~F~~~~f~~~v 217 (908)
-.++.|.|.+|+|||++|.+++.....+ ...++|+++
T Consensus 36 gs~~lI~G~pGtGKT~l~~qf~~~~a~~-Ge~vlyis~ 72 (259)
T TIGR03878 36 YSVINITGVSDTGKSLMVEQFAVTQASR-GNPVLFVTV 72 (259)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhC-CCcEEEEEe
Confidence 6789999999999999999987653322 234666665
No 311
>PTZ00301 uridine kinase; Provisional
Probab=93.83 E-value=0.047 Score=57.24 Aligned_cols=26 Identities=42% Similarity=0.491 Sum_probs=22.9
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
..+|+|.|.+|+||||||+.+.+.+.
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~ 28 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELM 28 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHH
Confidence 47899999999999999999887654
No 312
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=93.82 E-value=1.2 Score=48.32 Aligned_cols=26 Identities=42% Similarity=0.507 Sum_probs=22.8
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
-.+++|+|..|+|||||.+.++-...
T Consensus 38 Ge~~~I~G~NGsGKSTLlk~l~Gl~~ 63 (257)
T PRK11247 38 GQFVAVVGRSGCGKSTLLRLLAGLET 63 (257)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 46899999999999999999987543
No 313
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=93.81 E-value=0.77 Score=47.77 Aligned_cols=25 Identities=16% Similarity=0.234 Sum_probs=22.3
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDP 204 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~ 204 (908)
-.+++|+|..|+|||||.+.++--.
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~Gl~ 50 (208)
T cd03268 26 GEIYGFLGPNGAGKTTTMKIILGLI 50 (208)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCc
Confidence 4689999999999999999998654
No 314
>PRK04040 adenylate kinase; Provisional
Probab=93.79 E-value=0.047 Score=56.28 Aligned_cols=26 Identities=19% Similarity=0.514 Sum_probs=23.3
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
..+|+|+|++|+||||+++.+.+...
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 36899999999999999999998764
No 315
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=93.74 E-value=0.84 Score=47.32 Aligned_cols=25 Identities=28% Similarity=0.429 Sum_probs=22.4
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDP 204 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~ 204 (908)
-.+++|+|..|.|||||.+.++...
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (201)
T cd03231 26 GEALQVTGPNGSGKTTLLRILAGLS 50 (201)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4699999999999999999998754
No 316
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=93.73 E-value=0.41 Score=48.86 Aligned_cols=26 Identities=31% Similarity=0.455 Sum_probs=22.9
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
-.+++|+|..|.|||||.+.++.-..
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~~~ 51 (182)
T cd03215 26 GEIVGIAGLVGNGQTELAEALFGLRP 51 (182)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 46899999999999999999987654
No 317
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.73 E-value=1.2 Score=48.39 Aligned_cols=26 Identities=38% Similarity=0.533 Sum_probs=22.8
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
-.+++|+|..|+|||||.+.++--..
T Consensus 50 Ge~~~l~G~nGsGKSTLl~~L~Gl~~ 75 (269)
T cd03294 50 GEIFVIMGLSGSGKSTLLRCINRLIE 75 (269)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 46999999999999999999987553
No 318
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=93.73 E-value=0.6 Score=56.03 Aligned_cols=44 Identities=27% Similarity=0.308 Sum_probs=32.2
Q ss_pred CCCcCccHHHHHHHHHhccCCceEEEEEecCCCChHHHHHHHHhC
Q 002559 159 QGYPISSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASD 203 (908)
Q Consensus 159 ~~~g~e~~~~~l~~LL~~~~~~~vV~I~GmgGiGKTtLA~~v~~~ 203 (908)
..+|.+..++.+...+... ...-|.|+|.+|+|||++|+.+++.
T Consensus 66 ~iiGqs~~i~~l~~al~~~-~~~~vLi~Ge~GtGKt~lAr~i~~~ 109 (531)
T TIGR02902 66 EIIGQEEGIKALKAALCGP-NPQHVIIYGPPGVGKTAAARLVLEE 109 (531)
T ss_pred HeeCcHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHH
Confidence 4567776666666555433 3345679999999999999999864
No 319
>PRK13947 shikimate kinase; Provisional
Probab=93.69 E-value=0.046 Score=55.00 Aligned_cols=26 Identities=27% Similarity=0.520 Sum_probs=22.8
Q ss_pred EEEEEecCCCChHHHHHHHHhCCCCc
Q 002559 182 VILIVGLSGIGKSCLARQVASDPPER 207 (908)
Q Consensus 182 vV~I~GmgGiGKTtLA~~v~~~~~~~ 207 (908)
-|.|+|++|+||||+|+.+++.+.-.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~ 28 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFG 28 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 48899999999999999999887533
No 320
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=93.69 E-value=0.44 Score=49.87 Aligned_cols=116 Identities=16% Similarity=0.223 Sum_probs=68.2
Q ss_pred eEEEEEecCCCChHHHHHHHHhCCCC---ccccc-eEEEeeeeeeccccccCCcchHHHHHHHHHHHHHHHhccccccCC
Q 002559 181 QVILIVGLSGIGKSCLARQVASDPPE---RFVGG-AVELGFGQWCSRAACNGSKSDYQKRLARKISKFLVQIGFWKKIKD 256 (908)
Q Consensus 181 ~vV~I~GmgGiGKTtLA~~v~~~~~~---~F~~~-~f~~~v~~wv~~~~~~~s~~~~~~~l~~~i~~~L~~lg~~~~~~~ 256 (908)
.-..|.|++|+|||||-+.+++-... +|... +..+|=+.- .+.|....+... +.+.+ +..+
T Consensus 138 lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersE--Iag~~~gvpq~~--~g~R~-----------dVld 202 (308)
T COG3854 138 LNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSE--IAGCLNGVPQHG--RGRRM-----------DVLD 202 (308)
T ss_pred eeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccch--hhccccCCchhh--hhhhh-----------hhcc
Confidence 34678999999999999999876542 34332 222222211 122433333322 22211 1111
Q ss_pred CCCCHHHHHHHHHHHhccCCeeEEEecCCchhHHHHHhhhcCCCcEEEEEccchhhhh
Q 002559 257 ENSDLEYLCCLLQEALYGKSILILLDDVWEQDIVERFAKLYDNDCKYLVTTRNEAVYE 314 (908)
Q Consensus 257 ~~~~~~~l~~~l~~~L~~kr~LLVLDDV~~~~~~e~l~~~~~~gsrILVTTR~~~va~ 314 (908)
....-+.+...+++. .+=.+|+|.+-..++-.++......|-+++.|..--.+..
T Consensus 203 ~cpk~~gmmmaIrsm---~PEViIvDEIGt~~d~~A~~ta~~~GVkli~TaHG~~ied 257 (308)
T COG3854 203 PCPKAEGMMMAIRSM---SPEVIIVDEIGTEEDALAILTALHAGVKLITTAHGNGIED 257 (308)
T ss_pred cchHHHHHHHHHHhc---CCcEEEEeccccHHHHHHHHHHHhcCcEEEEeeccccHHH
Confidence 122333444444443 4568999999999998888888889999988876554443
No 321
>PRK06547 hypothetical protein; Provisional
Probab=93.68 E-value=0.06 Score=54.62 Aligned_cols=28 Identities=36% Similarity=0.406 Sum_probs=24.5
Q ss_pred CCceEEEEEecCCCChHHHHHHHHhCCC
Q 002559 178 ETHQVILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 178 ~~~~vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
....+|+|.|++|+||||+|+.+++...
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~~ 40 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAARTG 40 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4578999999999999999999988643
No 322
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=93.68 E-value=0.29 Score=54.51 Aligned_cols=48 Identities=25% Similarity=0.205 Sum_probs=32.8
Q ss_pred HHHHHhccCCeeEEEecCCch-------hHHHHHhhhcCCCcEEEEEccchhhhh
Q 002559 267 LLQEALYGKSILILLDDVWEQ-------DIVERFAKLYDNDCKYLVTTRNEAVYE 314 (908)
Q Consensus 267 ~l~~~L~~kr~LLVLDDV~~~-------~~~e~l~~~~~~gsrILVTTR~~~va~ 314 (908)
.+...|-.++=+|+||.--.. ..|+.+...-..|..||+||.+.+-+.
T Consensus 148 ~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~ 202 (306)
T PRK13537 148 TLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAE 202 (306)
T ss_pred HHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHH
Confidence 355666778889999998643 234444444345889999999886543
No 323
>PRK13948 shikimate kinase; Provisional
Probab=93.65 E-value=0.087 Score=53.96 Aligned_cols=30 Identities=17% Similarity=0.253 Sum_probs=25.6
Q ss_pred CCceEEEEEecCCCChHHHHHHHHhCCCCc
Q 002559 178 ETHQVILIVGLSGIGKSCLARQVASDPPER 207 (908)
Q Consensus 178 ~~~~vV~I~GmgGiGKTtLA~~v~~~~~~~ 207 (908)
.....|.++|+.|+||||+++.+++.....
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~~ 37 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALMLH 37 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 346789999999999999999999887533
No 324
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=93.64 E-value=0.27 Score=54.99 Aligned_cols=49 Identities=29% Similarity=0.300 Sum_probs=33.6
Q ss_pred HHHHHHhcc-CCceEEEEEecCCCChHHHHHHHHhCCCCc-----cccceEEEee
Q 002559 169 FLRKLLEQE-ETHQVILIVGLSGIGKSCLARQVASDPPER-----FVGGAVELGF 217 (908)
Q Consensus 169 ~l~~LL~~~-~~~~vV~I~GmgGiGKTtLA~~v~~~~~~~-----F~~~~f~~~v 217 (908)
.+..+|..+ ....++-|+|.+|+|||++|.+++...... -...++|++.
T Consensus 90 ~lD~~l~GGi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~t 144 (317)
T PRK04301 90 ELDELLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDT 144 (317)
T ss_pred HHHHHhcCCccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeC
Confidence 444555543 236788999999999999999998654311 1246777765
No 325
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=93.64 E-value=1.1 Score=47.25 Aligned_cols=26 Identities=27% Similarity=0.482 Sum_probs=22.7
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
-.+++|+|..|.|||||.+.++....
T Consensus 6 Ge~~~l~G~nGsGKSTLl~~l~G~~~ 31 (223)
T TIGR03771 6 GELLGLLGPNGAGKTTLLRAILGLIP 31 (223)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 36899999999999999999987543
No 326
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=93.63 E-value=0.6 Score=49.23 Aligned_cols=47 Identities=26% Similarity=0.433 Sum_probs=34.3
Q ss_pred cCccHHHHHHHHHhc------------cCCceEEEEEecCCCChHHHHHHHHhCCCCcc
Q 002559 162 PISSKSKFLRKLLEQ------------EETHQVILIVGLSGIGKSCLARQVASDPPERF 208 (908)
Q Consensus 162 g~e~~~~~l~~LL~~------------~~~~~vV~I~GmgGiGKTtLA~~v~~~~~~~F 208 (908)
|.+-....+++-.+- -+.++=|.++|++|.|||-||++|+++-...|
T Consensus 159 gld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~f 217 (408)
T KOG0727|consen 159 GLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAF 217 (408)
T ss_pred cchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchhe
Confidence 555555555554331 12467788999999999999999999876555
No 327
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=93.62 E-value=1.2 Score=47.08 Aligned_cols=25 Identities=16% Similarity=0.267 Sum_probs=22.2
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDP 204 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~ 204 (908)
-.+++|+|..|+|||||.+.++--.
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 50 (232)
T cd03218 26 GEIVGLLGPNGAGKTTTFYMIVGLV 50 (232)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4689999999999999999998654
No 328
>PRK03846 adenylylsulfate kinase; Provisional
Probab=93.62 E-value=0.42 Score=49.52 Aligned_cols=28 Identities=32% Similarity=0.412 Sum_probs=24.5
Q ss_pred CCceEEEEEecCCCChHHHHHHHHhCCC
Q 002559 178 ETHQVILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 178 ~~~~vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
....+|+|+|++|+||||||+.+.....
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~ 49 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALH 49 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3468999999999999999999988653
No 329
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=93.57 E-value=1.3 Score=46.40 Aligned_cols=26 Identities=35% Similarity=0.445 Sum_probs=22.8
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
-.+++|+|..|+|||||.+.++-...
T Consensus 31 G~~~~i~G~nGsGKSTLl~~i~G~~~ 56 (221)
T TIGR02211 31 GEIVAIVGSSGSGKSTLLHLLGGLDN 56 (221)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 46899999999999999999987543
No 330
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=93.57 E-value=1.3 Score=49.26 Aligned_cols=26 Identities=27% Similarity=0.369 Sum_probs=22.8
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
-.+++|+|..|.|||||.+.++-...
T Consensus 30 Ge~~~l~G~NGaGKSTLl~~l~Gl~~ 55 (303)
T TIGR01288 30 GECFGLLGPNGAGKSTIARMLLGMIS 55 (303)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 46899999999999999999987543
No 331
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=93.56 E-value=1.1 Score=47.69 Aligned_cols=26 Identities=31% Similarity=0.416 Sum_probs=22.7
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
-.+++|.|..|+|||||++.++-...
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G~~~ 53 (242)
T PRK11124 28 GETLVLLGPSGAGKSSLLRVLNLLEM 53 (242)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 46899999999999999999986543
No 332
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=93.55 E-value=1.2 Score=47.87 Aligned_cols=25 Identities=16% Similarity=0.365 Sum_probs=22.4
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDP 204 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~ 204 (908)
-.+++|+|..|+|||||++.++--.
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (255)
T PRK11300 31 QEIVSLIGPNGAGKTTVFNCLTGFY 55 (255)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCc
Confidence 4789999999999999999998654
No 333
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=93.55 E-value=1 Score=48.45 Aligned_cols=26 Identities=31% Similarity=0.505 Sum_probs=22.7
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
-.+++|+|..|+|||||.+.++....
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~G~~~ 51 (252)
T TIGR03005 26 GEKVALIGPSGSGKSTILRILMTLEP 51 (252)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 46899999999999999999987543
No 334
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=93.54 E-value=1.1 Score=47.48 Aligned_cols=26 Identities=31% Similarity=0.441 Sum_probs=22.8
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
-.+++|+|..|+|||||++.++.-..
T Consensus 11 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 36 (230)
T TIGR01184 11 GEFISLIGHSGCGKSTLLNLISGLAQ 36 (230)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 35899999999999999999987654
No 335
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=93.53 E-value=1.3 Score=46.49 Aligned_cols=25 Identities=20% Similarity=0.452 Sum_probs=22.2
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDP 204 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~ 204 (908)
-.+++|+|..|+|||||++.++.-.
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (222)
T cd03224 26 GEIVALLGRNGAGKTTLLKTIMGLL 50 (222)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCC
Confidence 4699999999999999999998654
No 336
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.49 E-value=1.2 Score=47.45 Aligned_cols=26 Identities=19% Similarity=0.363 Sum_probs=22.6
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
-.+++|+|..|.|||||.+.++-...
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~~ 52 (242)
T cd03295 27 GEFLVLIGPSGSGKTTTMKMINRLIE 52 (242)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 46899999999999999999986543
No 337
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=93.48 E-value=0.17 Score=63.17 Aligned_cols=108 Identities=18% Similarity=0.162 Sum_probs=59.7
Q ss_pred cCCeeEEEecCCch---hHHHH----Hhhhc-CCCcEEEEEccchhhhhhcccc-ee-----cCChhhHHHHHHHHhhhc
Q 002559 274 GKSILILLDDVWEQ---DIVER----FAKLY-DNDCKYLVTTRNEAVYEITEAE-KV-----ELSKDDIMEISKSILLYH 339 (908)
Q Consensus 274 ~kr~LLVLDDV~~~---~~~e~----l~~~~-~~gsrILVTTR~~~va~~~~~~-~~-----~L~~~ea~~Lf~~~~~~~ 339 (908)
..+-|+++|..-.. ..... +...+ ..|+.+|+||....+....... .+ .++.+. + .+.+
T Consensus 401 ~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~eL~~~~~~~~~v~~~~~~~d~~~---l----~p~Y 473 (771)
T TIGR01069 401 TENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKELKALMYNNEGVENASVLFDEET---L----SPTY 473 (771)
T ss_pred CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHHHHhcCCCCeEEeEEEEcCCC---C----ceEE
Confidence 47899999998643 22222 22222 4689999999998775432111 11 233221 1 1111
Q ss_pred ccccCcchHHHHHHHHhHhCCchhhHhHhhhhhhccCCHHHHHHHHHHhch
Q 002559 340 SLLAEEELPAAAESLLERCGHHPLTVAVMGKALRKELRSEKWEKAITDLST 390 (908)
Q Consensus 340 ~~~~~~~l~~i~~~Iv~~cgGLPLAI~~ig~~L~~~~~~~eW~~~l~~L~~ 390 (908)
.......-...+-.|++++ |+|-.|.--|..+... ...+.+.++++|..
T Consensus 474 kl~~G~~g~S~a~~iA~~~-Glp~~ii~~A~~~~~~-~~~~~~~li~~L~~ 522 (771)
T TIGR01069 474 KLLKGIPGESYAFEIAQRY-GIPHFIIEQAKTFYGE-FKEEINVLIEKLSA 522 (771)
T ss_pred EECCCCCCCcHHHHHHHHh-CcCHHHHHHHHHHHHh-hHHHHHHHHHHHHH
Confidence 1111001124567777776 7888877777777643 34567777777654
No 338
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=93.46 E-value=0.19 Score=60.20 Aligned_cols=26 Identities=31% Similarity=0.647 Sum_probs=23.5
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
-++..++|++|+||||||.-++++..
T Consensus 326 kKilLL~GppGlGKTTLAHViAkqaG 351 (877)
T KOG1969|consen 326 KKILLLCGPPGLGKTTLAHVIAKQAG 351 (877)
T ss_pred cceEEeecCCCCChhHHHHHHHHhcC
Confidence 68999999999999999999998753
No 339
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=93.45 E-value=1.5 Score=47.59 Aligned_cols=25 Identities=28% Similarity=0.442 Sum_probs=22.2
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDP 204 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~ 204 (908)
-.+++|+|..|+|||||++.++--.
T Consensus 37 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 61 (265)
T PRK10575 37 GKVTGLIGHNGSGKSTLLKMLGRHQ 61 (265)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCC
Confidence 4699999999999999999998654
No 340
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.45 E-value=1.3 Score=47.50 Aligned_cols=26 Identities=35% Similarity=0.406 Sum_probs=22.6
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
-.+++|+|..|+|||||.+.++--..
T Consensus 30 Ge~~~l~G~nGsGKSTLl~~l~G~~~ 55 (253)
T PRK14267 30 NGVFALMGPSGCGKSTLLRTFNRLLE 55 (253)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccCC
Confidence 46899999999999999999986543
No 341
>PHA02244 ATPase-like protein
Probab=93.42 E-value=0.16 Score=57.39 Aligned_cols=26 Identities=27% Similarity=0.380 Sum_probs=21.8
Q ss_pred EEEEEecCCCChHHHHHHHHhCCCCc
Q 002559 182 VILIVGLSGIGKSCLARQVASDPPER 207 (908)
Q Consensus 182 vV~I~GmgGiGKTtLA~~v~~~~~~~ 207 (908)
-|.|+|++|+|||+||+++++.....
T Consensus 121 PVLL~GppGtGKTtLA~aLA~~lg~p 146 (383)
T PHA02244 121 PVFLKGGAGSGKNHIAEQIAEALDLD 146 (383)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 46789999999999999999875433
No 342
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=93.40 E-value=0.082 Score=53.21 Aligned_cols=29 Identities=31% Similarity=0.552 Sum_probs=25.2
Q ss_pred eEEEEEecCCCChHHHHHHHHhCCCCccc
Q 002559 181 QVILIVGLSGIGKSCLARQVASDPPERFV 209 (908)
Q Consensus 181 ~vV~I~GmgGiGKTtLA~~v~~~~~~~F~ 209 (908)
+-|.++||.|+||||+.+.+++.+.-+|-
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~ 31 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFI 31 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcc
Confidence 35789999999999999999998876664
No 343
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.40 E-value=1.2 Score=47.16 Aligned_cols=26 Identities=31% Similarity=0.442 Sum_probs=23.1
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
-.+++|+|..|.|||||.+.++....
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~g~~~ 51 (232)
T cd03300 26 GEFFTLLGPSGCGKTTLLRLIAGFET 51 (232)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 46999999999999999999987654
No 344
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=93.39 E-value=1.2 Score=53.54 Aligned_cols=124 Identities=17% Similarity=0.185 Sum_probs=68.4
Q ss_pred cCccHHHHHHHHHh----ccCCceEEEEEecCCCChHHHHHHHHhCCC--------CccccceEEEeeeeeeccccccCC
Q 002559 162 PISSKSKFLRKLLE----QEETHQVILIVGLSGIGKSCLARQVASDPP--------ERFVGGAVELGFGQWCSRAACNGS 229 (908)
Q Consensus 162 g~e~~~~~l~~LL~----~~~~~~vV~I~GmgGiGKTtLA~~v~~~~~--------~~F~~~~f~~~v~~wv~~~~~~~s 229 (908)
.|+.+...|...+. .++....+=|.|.+|+|||..+..|.+.++ ..|+ .+.+|.-.- + +
T Consensus 400 cRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~--yveINgm~l--~-----~ 470 (767)
T KOG1514|consen 400 CRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD--YVEINGLRL--A-----S 470 (767)
T ss_pred chhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc--EEEEcceee--c-----C
Confidence 45655555555543 323355888999999999999999987443 2354 122222111 0 3
Q ss_pred cchHHHHHHHHHHHHHHHhccccccCCCCCCHHHHHHHHHHHhc-----cCCeeEEEecCCch-----hHHHHHhhhc-C
Q 002559 230 KSDYQKRLARKISKFLVQIGFWKKIKDENSDLEYLCCLLQEALY-----GKSILILLDDVWEQ-----DIVERFAKLY-D 298 (908)
Q Consensus 230 ~~~~~~~l~~~i~~~L~~lg~~~~~~~~~~~~~~l~~~l~~~L~-----~kr~LLVLDDV~~~-----~~~e~l~~~~-~ 298 (908)
. .++...|...+ .............+..+.. .+.++|++|+++.. +.+-.|..|. .
T Consensus 471 ~----~~~Y~~I~~~l---------sg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~ 537 (767)
T KOG1514|consen 471 P----REIYEKIWEAL---------SGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTL 537 (767)
T ss_pred H----HHHHHHHHHhc---------ccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcC
Confidence 3 34444443322 1122233333444444443 24688888888643 4455666666 4
Q ss_pred CCcEEEEEc
Q 002559 299 NDCKYLVTT 307 (908)
Q Consensus 299 ~gsrILVTT 307 (908)
++||++|-+
T Consensus 538 ~~sKLvvi~ 546 (767)
T KOG1514|consen 538 KNSKLVVIA 546 (767)
T ss_pred CCCceEEEE
Confidence 688766654
No 345
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=93.37 E-value=0.35 Score=53.83 Aligned_cols=50 Identities=28% Similarity=0.299 Sum_probs=34.6
Q ss_pred HHHHHHhcc-CCceEEEEEecCCCChHHHHHHHHhCCCCc-----cccceEEEeee
Q 002559 169 FLRKLLEQE-ETHQVILIVGLSGIGKSCLARQVASDPPER-----FVGGAVELGFG 218 (908)
Q Consensus 169 ~l~~LL~~~-~~~~vV~I~GmgGiGKTtLA~~v~~~~~~~-----F~~~~f~~~v~ 218 (908)
.+..+|..+ ..-.++-|+|.+|+||||++.+++...... -...++|++..
T Consensus 83 ~lD~~l~GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te 138 (310)
T TIGR02236 83 ELDELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTE 138 (310)
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECC
Confidence 455666543 236788999999999999999998664311 12367777653
No 346
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=93.37 E-value=0.7 Score=49.10 Aligned_cols=27 Identities=33% Similarity=0.466 Sum_probs=24.1
Q ss_pred CceEEEEEecCCCChHHHHHHHHhCCC
Q 002559 179 THQVILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 179 ~~~vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
.++=|.++|++|.|||-+|++|+|+-.
T Consensus 210 ppkgvllygppgtgktl~aravanrtd 236 (435)
T KOG0729|consen 210 PPKGVLLYGPPGTGKTLCARAVANRTD 236 (435)
T ss_pred CCCceEEeCCCCCchhHHHHHHhcccC
Confidence 367789999999999999999999864
No 347
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=93.35 E-value=0.063 Score=54.43 Aligned_cols=25 Identities=36% Similarity=0.490 Sum_probs=22.4
Q ss_pred eEEEEEecCCCChHHHHHHHHhCCC
Q 002559 181 QVILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 181 ~vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
++|.+.|++|+||||+|+.+.....
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~ 27 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLA 27 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhC
Confidence 5899999999999999999987754
No 348
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=93.32 E-value=0.15 Score=52.31 Aligned_cols=25 Identities=40% Similarity=0.550 Sum_probs=21.6
Q ss_pred eEEEEEecCCCChHHHHHHHHhCCC
Q 002559 181 QVILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 181 ~vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
.++.|.|.+|+||||++..++....
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~ 57 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALA 57 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 5889999999999999999886543
No 349
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=93.32 E-value=1.2 Score=53.34 Aligned_cols=26 Identities=35% Similarity=0.479 Sum_probs=22.7
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
-.+++|+|+.|+|||||.+.++--..
T Consensus 37 Ge~~~liG~NGsGKSTLl~~l~Gl~~ 62 (510)
T PRK15439 37 GEVHALLGGNGAGKSTLMKIIAGIVP 62 (510)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 46899999999999999999986543
No 350
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=93.25 E-value=1.4 Score=48.06 Aligned_cols=26 Identities=35% Similarity=0.557 Sum_probs=22.7
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
-.+++|+|..|+|||||++.++.-.+
T Consensus 33 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 58 (269)
T PRK11831 33 GKITAIMGPSGIGKTTLLRLIGGQIA 58 (269)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 46899999999999999999987543
No 351
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=93.23 E-value=1 Score=50.62 Aligned_cols=25 Identities=36% Similarity=0.489 Sum_probs=22.2
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDP 204 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~ 204 (908)
+..+.++|+.|+||||+|..++...
T Consensus 21 ~hA~Lf~G~~G~GK~~la~~~a~~l 45 (325)
T PRK08699 21 PNAWLFAGKKGIGKTAFARFAAQAL 45 (325)
T ss_pred ceEEEeECCCCCCHHHHHHHHHHHH
Confidence 5678899999999999999998754
No 352
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=93.21 E-value=0.27 Score=47.72 Aligned_cols=41 Identities=34% Similarity=0.468 Sum_probs=27.0
Q ss_pred cHHHHHHHHHhc-cCCceEEEEEecCCCChHHHHHHHHhCCC
Q 002559 165 SKSKFLRKLLEQ-EETHQVILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 165 ~~~~~l~~LL~~-~~~~~vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
..++.+..-+.. ......|.|+|..|+||+++|+.+++.-.
T Consensus 5 ~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~ 46 (138)
T PF14532_consen 5 PAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYSG 46 (138)
T ss_dssp HHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTT
T ss_pred HHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcC
Confidence 334444443332 12345678999999999999999987654
No 353
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=93.20 E-value=0.46 Score=52.09 Aligned_cols=31 Identities=19% Similarity=0.269 Sum_probs=27.1
Q ss_pred CCceEEEEEecCCCChHHHHHHHHhCCCCcc
Q 002559 178 ETHQVILIVGLSGIGKSCLARQVASDPPERF 208 (908)
Q Consensus 178 ~~~~vV~I~GmgGiGKTtLA~~v~~~~~~~F 208 (908)
.+..+|.|.|.+|+|||||...+.+..+...
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~ 132 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMRLKDSV 132 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhccCC
Confidence 4589999999999999999999998876554
No 354
>PRK00279 adk adenylate kinase; Reviewed
Probab=93.17 E-value=0.41 Score=50.28 Aligned_cols=24 Identities=25% Similarity=0.429 Sum_probs=21.0
Q ss_pred EEEEEecCCCChHHHHHHHHhCCC
Q 002559 182 VILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 182 vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
.|.|+|++|+||||+|+.++....
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~ 25 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYG 25 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 378999999999999999987653
No 355
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=93.17 E-value=0.066 Score=54.36 Aligned_cols=25 Identities=32% Similarity=0.468 Sum_probs=22.1
Q ss_pred eEEEEEecCCCChHHHHHHHHhCCC
Q 002559 181 QVILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 181 ~vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
.+++|+|++|+|||||++.++....
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999987654
No 356
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=93.17 E-value=0.43 Score=57.58 Aligned_cols=102 Identities=18% Similarity=0.202 Sum_probs=59.5
Q ss_pred CccccccccCCCcCccHHHHHHHHHhc--------cCC---ceEEEEEecCCCChHHHHHHHHhCCCCccccceEEEeee
Q 002559 150 PTRLKVKAEQGYPISSKSKFLRKLLEQ--------EET---HQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFG 218 (908)
Q Consensus 150 ~~~~~~~~~~~~g~e~~~~~l~~LL~~--------~~~---~~vV~I~GmgGiGKTtLA~~v~~~~~~~F~~~~f~~~v~ 218 (908)
|...++.-.+.-|.++-...|..-+.- .++ ..=|.+||++|.|||-||++|+-...-.| +++
T Consensus 664 PKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~F------lSV- 736 (953)
T KOG0736|consen 664 PKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLNF------LSV- 736 (953)
T ss_pred CCCCccchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceeeE------Eee-
Confidence 333344445555777666665543321 112 34578999999999999999997755433 222
Q ss_pred eeeccccccCCcchHHHHHHHHHHHHHHHhccccccCCCCCCHHHHHHHHHHHhccCCeeEEEecCCch
Q 002559 219 QWCSRAACNGSKSDYQKRLARKISKFLVQIGFWKKIKDENSDLEYLCCLLQEALYGKSILILLDDVWEQ 287 (908)
Q Consensus 219 ~wv~~~~~~~s~~~~~~~l~~~i~~~L~~lg~~~~~~~~~~~~~~l~~~l~~~L~~kr~LLVLDDV~~~ 287 (908)
-.++..+. - -..+.+...+.+.+.-..++|.|.||.+++.
T Consensus 737 ----------KGPELLNM----Y---------------VGqSE~NVR~VFerAR~A~PCVIFFDELDSl 776 (953)
T KOG0736|consen 737 ----------KGPELLNM----Y---------------VGQSEENVREVFERARSAAPCVIFFDELDSL 776 (953)
T ss_pred ----------cCHHHHHH----H---------------hcchHHHHHHHHHHhhccCCeEEEecccccc
Confidence 22222111 1 0113344444555555568999999999864
No 357
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=93.15 E-value=0.32 Score=48.02 Aligned_cols=24 Identities=46% Similarity=0.621 Sum_probs=21.0
Q ss_pred EEEEEecCCCChHHHHHHHHhCCC
Q 002559 182 VILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 182 vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
+|.|+|.+|+||||||+.+.....
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~ 24 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLF 24 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999987653
No 358
>PRK06217 hypothetical protein; Validated
Probab=93.13 E-value=0.066 Score=54.77 Aligned_cols=24 Identities=33% Similarity=0.404 Sum_probs=21.9
Q ss_pred EEEEEecCCCChHHHHHHHHhCCC
Q 002559 182 VILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 182 vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
.|.|.|.+|+||||+|+.+.....
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~ 26 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLD 26 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 489999999999999999998764
No 359
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=93.13 E-value=0.22 Score=42.82 Aligned_cols=73 Identities=8% Similarity=0.038 Sum_probs=59.7
Q ss_pred CCCccccHHHHHhhhhhcCChhhHHHHhhhccHHHHHhhcCcchhhhhHHHHHHHHHHHhhcchHHHHHHHHhhh
Q 002559 637 DPMIQTDILTVLTKLAEFGTPETVDKVLQSIPFDKLATLLSYDAKEWHENMFTILMSLAKVGKSKAVEKMFAFEI 711 (908)
Q Consensus 637 ~~~t~~~~~~~l~~l~e~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 711 (908)
||.+.....++...|.+.|++++|.+.+++..-. ....++.++++.....++...+...|++++|.+++.--+
T Consensus 1 H~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 1 HPDTANAYNNLARVYRELGRYDEALDYYEKALDI--EEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH--HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4556667788888999999999999999996555 446678888888888999999999999999999997644
No 360
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=93.13 E-value=0.87 Score=48.55 Aligned_cols=25 Identities=40% Similarity=0.561 Sum_probs=22.3
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDP 204 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~ 204 (908)
-.+++|+|..|.|||||++.++--.
T Consensus 27 Ge~~~l~G~nGsGKSTLl~~l~G~~ 51 (240)
T PRK09493 27 GEVVVIIGPSGSGKSTLLRCINKLE 51 (240)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4689999999999999999998654
No 361
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=93.13 E-value=0.061 Score=55.20 Aligned_cols=49 Identities=14% Similarity=0.150 Sum_probs=30.5
Q ss_pred HHHHhcc--CCeeEEEecCCch---hH----HHHHhhhc-C-CCcEEEEEccchhhhhhc
Q 002559 268 LQEALYG--KSILILLDDVWEQ---DI----VERFAKLY-D-NDCKYLVTTRNEAVYEIT 316 (908)
Q Consensus 268 l~~~L~~--kr~LLVLDDV~~~---~~----~e~l~~~~-~-~gsrILVTTR~~~va~~~ 316 (908)
+...+.. ++-|+++|..-.. .+ ...+...+ . .++.+|++|.+.++...+
T Consensus 69 l~~~l~~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~l~~~~ 128 (185)
T smart00534 69 TANILKNATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHELTKLA 128 (185)
T ss_pred HHHHHHhCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHHHh
Confidence 3444443 7889999998532 21 12222222 3 378999999998876654
No 362
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=93.13 E-value=0.058 Score=55.79 Aligned_cols=23 Identities=35% Similarity=0.497 Sum_probs=21.0
Q ss_pred EEEEEecCCCChHHHHHHHHhCC
Q 002559 182 VILIVGLSGIGKSCLARQVASDP 204 (908)
Q Consensus 182 vV~I~GmgGiGKTtLA~~v~~~~ 204 (908)
+|+|.|.+|+||||||+.+....
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998765
No 363
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=93.13 E-value=0.21 Score=57.71 Aligned_cols=49 Identities=29% Similarity=0.438 Sum_probs=34.5
Q ss_pred CcCccHHHHHH---HHHhccC-------C-ceEEEEEecCCCChHHHHHHHHhCCCCccc
Q 002559 161 YPISSKSKFLR---KLLEQEE-------T-HQVILIVGLSGIGKSCLARQVASDPPERFV 209 (908)
Q Consensus 161 ~g~e~~~~~l~---~LL~~~~-------~-~~vV~I~GmgGiGKTtLA~~v~~~~~~~F~ 209 (908)
-|.++-..+++ +.|.+.. . ++=|.++|++|.|||-||++++-....-|.
T Consensus 307 kG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF 366 (752)
T KOG0734|consen 307 KGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFF 366 (752)
T ss_pred cChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeE
Confidence 36665444444 4454421 1 678999999999999999999987665553
No 364
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=93.13 E-value=0.81 Score=46.77 Aligned_cols=22 Identities=36% Similarity=0.549 Sum_probs=20.3
Q ss_pred EEEEecCCCChHHHHHHHHhCC
Q 002559 183 ILIVGLSGIGKSCLARQVASDP 204 (908)
Q Consensus 183 V~I~GmgGiGKTtLA~~v~~~~ 204 (908)
|.|.|++|+||||+|+.++...
T Consensus 2 I~i~G~pGsGKst~a~~La~~~ 23 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKY 23 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999999874
No 365
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=93.12 E-value=0.073 Score=51.55 Aligned_cols=23 Identities=43% Similarity=0.653 Sum_probs=20.8
Q ss_pred EEEEecCCCChHHHHHHHHhCCC
Q 002559 183 ILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 183 V~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
|.++|.+|+|||+||+.+++...
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~ 24 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLG 24 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhh
Confidence 67999999999999999998763
No 366
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=93.12 E-value=1.4 Score=49.78 Aligned_cols=26 Identities=31% Similarity=0.410 Sum_probs=22.7
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
-.+++|+|..|+|||||++.++.-..
T Consensus 31 Gei~~iiG~nGsGKSTLlk~L~Gl~~ 56 (343)
T PRK11153 31 GEIFGVIGASGAGKSTLIRCINLLER 56 (343)
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 46899999999999999999987553
No 367
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=93.11 E-value=0.47 Score=50.50 Aligned_cols=25 Identities=36% Similarity=0.413 Sum_probs=21.2
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDP 204 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~ 204 (908)
..++.|.|.+|+||||||.+++...
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~ 48 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGF 48 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 5699999999999999987776544
No 368
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=93.11 E-value=1.5 Score=48.71 Aligned_cols=26 Identities=23% Similarity=0.376 Sum_probs=22.7
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
-.+++|+|..|.|||||++.++--.+
T Consensus 33 Ge~v~iiG~nGsGKSTLl~~L~Gl~~ 58 (305)
T PRK13651 33 GEFIAIIGQTGSGKTTFIEHLNALLL 58 (305)
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 46899999999999999999986543
No 369
>PTZ00088 adenylate kinase 1; Provisional
Probab=93.09 E-value=0.27 Score=52.27 Aligned_cols=23 Identities=26% Similarity=0.564 Sum_probs=20.9
Q ss_pred EEEEecCCCChHHHHHHHHhCCC
Q 002559 183 ILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 183 V~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
|.|.|++|+||||+|+.+++...
T Consensus 9 Ivl~G~PGsGK~T~a~~La~~~g 31 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSKKEN 31 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 88999999999999999998753
No 370
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=93.07 E-value=0.08 Score=55.27 Aligned_cols=29 Identities=28% Similarity=0.349 Sum_probs=25.8
Q ss_pred CceEEEEEecCCCChHHHHHHHHhCCCCc
Q 002559 179 THQVILIVGLSGIGKSCLARQVASDPPER 207 (908)
Q Consensus 179 ~~~vV~I~GmgGiGKTtLA~~v~~~~~~~ 207 (908)
.+.+|||-|.+|+||||+|+.++..+...
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~~~~ 35 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQLGVE 35 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHhCcC
Confidence 36799999999999999999999987754
No 371
>PRK14738 gmk guanylate kinase; Provisional
Probab=93.06 E-value=0.075 Score=55.56 Aligned_cols=30 Identities=20% Similarity=0.450 Sum_probs=24.7
Q ss_pred HhccCCceEEEEEecCCCChHHHHHHHHhC
Q 002559 174 LEQEETHQVILIVGLSGIGKSCLARQVASD 203 (908)
Q Consensus 174 L~~~~~~~vV~I~GmgGiGKTtLA~~v~~~ 203 (908)
.++....+.|.|+|++|+|||||+..+.+.
T Consensus 7 ~~~~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 7 FNKPAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred cCCCCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 344445789999999999999999999754
No 372
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.05 E-value=1.2 Score=48.89 Aligned_cols=26 Identities=27% Similarity=0.331 Sum_probs=22.9
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
-.+++|+|..|+|||||.+.++.-.+
T Consensus 33 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 58 (279)
T PRK13650 33 GEWLSIIGHNGSGKSTTVRLIDGLLE 58 (279)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 46899999999999999999987543
No 373
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=93.04 E-value=1.6 Score=46.98 Aligned_cols=26 Identities=31% Similarity=0.369 Sum_probs=22.9
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
-.+++|+|..|.|||||++.++...+
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~i~G~~~ 52 (256)
T TIGR03873 27 GSLTGLLGPNGSGKSTLLRLLAGALR 52 (256)
T ss_pred CcEEEEECCCCCCHHHHHHHHcCCCC
Confidence 46999999999999999999987543
No 374
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=92.96 E-value=1.8 Score=46.93 Aligned_cols=26 Identities=31% Similarity=0.471 Sum_probs=22.6
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
-.+++|+|..|+|||||.+.++--..
T Consensus 30 Ge~~~i~G~nGsGKSTLl~~i~G~~~ 55 (262)
T PRK09984 30 GEMVALLGPSGSGKSTLLRHLSGLIT 55 (262)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC
Confidence 46899999999999999999986543
No 375
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=92.96 E-value=0.062 Score=52.23 Aligned_cols=24 Identities=38% Similarity=0.486 Sum_probs=21.5
Q ss_pred EEEEEecCCCChHHHHHHHHhCCC
Q 002559 182 VILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 182 vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
+|.|.|.+|+||||+|+.++....
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~ 24 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLG 24 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998754
No 376
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=92.95 E-value=1.2 Score=53.44 Aligned_cols=26 Identities=23% Similarity=0.362 Sum_probs=22.9
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
-.+++|+|..|+|||||.+.++....
T Consensus 27 Ge~~~liG~NGsGKSTLl~~l~Gl~~ 52 (530)
T PRK15064 27 GNRYGLIGANGCGKSTFMKILGGDLE 52 (530)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 46899999999999999999997553
No 377
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=92.94 E-value=0.29 Score=53.43 Aligned_cols=25 Identities=24% Similarity=0.397 Sum_probs=19.5
Q ss_pred eEEEEEecCCCChHHHHHHHHhCCC
Q 002559 181 QVILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 181 ~vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
+.|.|+|.+|+||||+|+.+...+.
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~ 26 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLE 26 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHH
Confidence 4789999999999999999987654
No 378
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.93 E-value=0.9 Score=49.66 Aligned_cols=26 Identities=23% Similarity=0.218 Sum_probs=22.8
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
-.+++|+|..|+|||||++.++.-.+
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 56 (274)
T PRK13647 31 GSKTALLGPNGAGKSTLLLHLNGIYL 56 (274)
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 46999999999999999999986543
No 379
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=92.93 E-value=0.078 Score=51.65 Aligned_cols=27 Identities=33% Similarity=0.616 Sum_probs=22.6
Q ss_pred EEEEEecCCCChHHHHHHHHhCCCCcc
Q 002559 182 VILIVGLSGIGKSCLARQVASDPPERF 208 (908)
Q Consensus 182 vV~I~GmgGiGKTtLA~~v~~~~~~~F 208 (908)
.|+|+|+.|+|||||++.+.......|
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~~~~ 27 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFDPNF 27 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCCccc
Confidence 378999999999999999998755443
No 380
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=92.90 E-value=0.36 Score=54.87 Aligned_cols=26 Identities=27% Similarity=0.418 Sum_probs=22.7
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
-.+++|+|..|+|||||.+.++--..
T Consensus 24 Ge~~~l~G~nGsGKSTLl~~iaGl~~ 49 (352)
T PRK11144 24 QGITAIFGRSGAGKTSLINAISGLTR 49 (352)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 35899999999999999999987543
No 381
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=92.89 E-value=0.19 Score=52.83 Aligned_cols=23 Identities=35% Similarity=0.496 Sum_probs=20.6
Q ss_pred ceEEEEEecCCCChHHHHHHHHh
Q 002559 180 HQVILIVGLSGIGKSCLARQVAS 202 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~ 202 (908)
.+++.|+|+.|.|||||.+.+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 48899999999999999998873
No 382
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=92.89 E-value=0.32 Score=57.65 Aligned_cols=102 Identities=18% Similarity=0.210 Sum_probs=58.8
Q ss_pred HHHHHHHHhcc-CCceEEEEEecCCCChHHHHHHHHhCCCCccccceEEEeeeeeeccccccCCcchHHHHHHHHHHHHH
Q 002559 167 SKFLRKLLEQE-ETHQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACNGSKSDYQKRLARKISKFL 245 (908)
Q Consensus 167 ~~~l~~LL~~~-~~~~vV~I~GmgGiGKTtLA~~v~~~~~~~F~~~~f~~~v~~wv~~~~~~~s~~~~~~~l~~~i~~~L 245 (908)
...++.+|..+ ..-.++.|.|.+|+|||||+.+++.....+= ..++|+.+. +...++.+..
T Consensus 249 i~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~g-e~~~y~s~e-------------Es~~~i~~~~---- 310 (484)
T TIGR02655 249 VVRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACANK-ERAILFAYE-------------ESRAQLLRNA---- 310 (484)
T ss_pred hHhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHCC-CeEEEEEee-------------CCHHHHHHHH----
Confidence 34566667653 2367999999999999999999987654332 235555442 2223333332
Q ss_pred HHhccccc------------cCCCCCCHHHHHHHHHHHhcc-CCeeEEEecCCc
Q 002559 246 VQIGFWKK------------IKDENSDLEYLCCLLQEALYG-KSILILLDDVWE 286 (908)
Q Consensus 246 ~~lg~~~~------------~~~~~~~~~~l~~~l~~~L~~-kr~LLVLDDV~~ 286 (908)
..+|.... ......+.++....+.+.+.. +.-.+|+|.+..
T Consensus 311 ~~lg~~~~~~~~~g~l~~~~~~p~~~~~~~~~~~i~~~i~~~~~~~vvIDsi~~ 364 (484)
T TIGR02655 311 YSWGIDFEEMEQQGLLKIICAYPESAGLEDHLQIIKSEIADFKPARIAIDSLSA 364 (484)
T ss_pred HHcCCChHHHhhCCcEEEEEcccccCChHHHHHHHHHHHHHcCCCEEEEcCHHH
Confidence 22332100 011122446666666666654 456788898753
No 383
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=92.89 E-value=0.48 Score=49.97 Aligned_cols=47 Identities=21% Similarity=0.305 Sum_probs=31.9
Q ss_pred HHHHHhcc-CCceEEEEEecCCCChHHHHHHHHhCCCCccccceEEEee
Q 002559 170 LRKLLEQE-ETHQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGF 217 (908)
Q Consensus 170 l~~LL~~~-~~~~vV~I~GmgGiGKTtLA~~v~~~~~~~F~~~~f~~~v 217 (908)
+..++..+ ..-.++.|.|.+|+|||++|.+++.....+ ...++|+++
T Consensus 5 LD~~l~gGi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~-g~~~~y~s~ 52 (224)
T TIGR03880 5 LDEMLGGGFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKN-GEKAMYISL 52 (224)
T ss_pred hHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhC-CCeEEEEEC
Confidence 45555432 236789999999999999999987653222 234666555
No 384
>PRK13949 shikimate kinase; Provisional
Probab=92.87 E-value=0.078 Score=53.63 Aligned_cols=24 Identities=33% Similarity=0.581 Sum_probs=22.0
Q ss_pred EEEEEecCCCChHHHHHHHHhCCC
Q 002559 182 VILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 182 vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
-|.|+|++|+||||+++.+++...
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 588999999999999999998875
No 385
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.87 E-value=1.6 Score=46.15 Aligned_cols=26 Identities=27% Similarity=0.341 Sum_probs=22.7
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
-.+++|+|..|.|||||.+.++....
T Consensus 29 G~~~~i~G~nGsGKSTLl~~l~G~~~ 54 (229)
T cd03254 29 GETVAIVGPTGAGKTTLINLLMRFYD 54 (229)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCcC
Confidence 46899999999999999999987653
No 386
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=92.85 E-value=0.53 Score=49.48 Aligned_cols=25 Identities=32% Similarity=0.287 Sum_probs=22.1
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDP 204 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~ 204 (908)
-.+++|+|..|.|||||.+.++-..
T Consensus 30 Ge~~~i~G~nGsGKSTLl~~l~G~~ 54 (221)
T cd03244 30 GEKVGIVGRTGSGKSSLLLALFRLV 54 (221)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCC
Confidence 4689999999999999999998653
No 387
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=92.85 E-value=0.36 Score=56.13 Aligned_cols=25 Identities=28% Similarity=0.477 Sum_probs=21.1
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDP 204 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~ 204 (908)
.++++++|++|+||||++..++...
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~ 245 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARY 245 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3699999999999999888877654
No 388
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.84 E-value=1.1 Score=48.34 Aligned_cols=26 Identities=27% Similarity=0.441 Sum_probs=22.6
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
-.+++|+|..|+|||||.+.++.-..
T Consensus 33 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 58 (254)
T PRK14273 33 NSITALIGPSGCGKSTFLRTLNRMND 58 (254)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcccc
Confidence 46999999999999999999986543
No 389
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=92.84 E-value=1.2 Score=53.38 Aligned_cols=27 Identities=30% Similarity=0.300 Sum_probs=23.2
Q ss_pred CceEEEEEecCCCChHHHHHHHHhCCC
Q 002559 179 THQVILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 179 ~~~vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
.-..++|+|+.|+|||||++.+..-..
T Consensus 360 ~G~~vaIvG~SGsGKSTLl~lL~g~~~ 386 (529)
T TIGR02868 360 PGERVAILGPSGSGKSTLLMLLTGLLD 386 (529)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 357899999999999999999986543
No 390
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=92.82 E-value=0.071 Score=52.40 Aligned_cols=23 Identities=35% Similarity=0.683 Sum_probs=20.5
Q ss_pred EEEEEecCCCChHHHHHHHHhCC
Q 002559 182 VILIVGLSGIGKSCLARQVASDP 204 (908)
Q Consensus 182 vV~I~GmgGiGKTtLA~~v~~~~ 204 (908)
++.|+|++|+||||+|+.+....
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 47899999999999999998874
No 391
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=92.81 E-value=0.32 Score=47.96 Aligned_cols=91 Identities=25% Similarity=0.283 Sum_probs=47.0
Q ss_pred EEecCCCChHHHHHHHHhCCCCccccceEEEeeeeeeccccccCCcchHHHHHHHHHHHHHHHhccccccCCCCCCHHHH
Q 002559 185 IVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACNGSKSDYQKRLARKISKFLVQIGFWKKIKDENSDLEYL 264 (908)
Q Consensus 185 I~GmgGiGKTtLA~~v~~~~~~~F~~~~f~~~v~~wv~~~~~~~s~~~~~~~l~~~i~~~L~~lg~~~~~~~~~~~~~~l 264 (908)
|.|++|+||||+|+.++.+.. ...++++..+..... ... .+...+.+.+.. ...-..+-+
T Consensus 1 i~G~PgsGK~t~~~~la~~~~------~~~is~~~llr~~~~--~~s----~~g~~i~~~l~~--------g~~vp~~~v 60 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYG------LVHISVGDLLREEIK--SDS----ELGKQIQEYLDN--------GELVPDELV 60 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHT------SEEEEHHHHHHHHHH--TTS----HHHHHHHHHHHT--------TSS--HHHH
T ss_pred CcCCCCCChHHHHHHHHHhcC------cceechHHHHHHHHh--hhh----HHHHHHHHHHHh--------hccchHHHH
Confidence 689999999999999998642 233333322110000 111 112222222211 112234445
Q ss_pred HHHHHHHhcc--CCeeEEEecCC-chhHHHHHhh
Q 002559 265 CCLLQEALYG--KSILILLDDVW-EQDIVERFAK 295 (908)
Q Consensus 265 ~~~l~~~L~~--kr~LLVLDDV~-~~~~~e~l~~ 295 (908)
...+...+.. ...-+|||+.- +.++.+.+..
T Consensus 61 ~~ll~~~l~~~~~~~g~ildGfPrt~~Qa~~l~~ 94 (151)
T PF00406_consen 61 IELLKERLEQPPCNRGFILDGFPRTLEQAEALEE 94 (151)
T ss_dssp HHHHHHHHHSGGTTTEEEEESB-SSHHHHHHHHH
T ss_pred HHHHHHHHhhhcccceeeeeeccccHHHHHHHHH
Confidence 5666666653 35668899985 4456665554
No 392
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=92.80 E-value=0.085 Score=53.49 Aligned_cols=24 Identities=38% Similarity=0.641 Sum_probs=21.9
Q ss_pred eEEEEEecCCCChHHHHHHHHhCC
Q 002559 181 QVILIVGLSGIGKSCLARQVASDP 204 (908)
Q Consensus 181 ~vV~I~GmgGiGKTtLA~~v~~~~ 204 (908)
++|+|+|++|+||||||+.++...
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 579999999999999999999864
No 393
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=92.80 E-value=0.76 Score=46.11 Aligned_cols=39 Identities=13% Similarity=0.164 Sum_probs=26.4
Q ss_pred cHHHHHHHHHhccCCceEEEEEecCCCChHH-HHHHHHhCCCC
Q 002559 165 SKSKFLRKLLEQEETHQVILIVGLSGIGKSC-LARQVASDPPE 206 (908)
Q Consensus 165 ~~~~~l~~LL~~~~~~~vV~I~GmgGiGKTt-LA~~v~~~~~~ 206 (908)
...+.+..++... +.+.|.|..|+|||+ ++..+++....
T Consensus 12 ~Q~~~~~~~~~~~---~~~~i~~~~GsGKT~~~~~~~~~~~~~ 51 (201)
T smart00487 12 YQKEAIEALLSGL---RDVILAAPTGSGKTLAALLPALEALKR 51 (201)
T ss_pred HHHHHHHHHHcCC---CcEEEECCCCCchhHHHHHHHHHHhcc
Confidence 4445555555432 688899999999999 55556555443
No 394
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=92.79 E-value=0.15 Score=52.81 Aligned_cols=26 Identities=42% Similarity=0.552 Sum_probs=24.1
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
..+|+|-||=|+||||||+.++++..
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhC
Confidence 46899999999999999999999887
No 395
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=92.78 E-value=1.1 Score=53.26 Aligned_cols=26 Identities=35% Similarity=0.533 Sum_probs=23.1
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
-.+++|+|..|+|||||.+.++-...
T Consensus 50 GEivgIiGpNGSGKSTLLkiLaGLl~ 75 (549)
T PRK13545 50 GEIVGIIGLNGSGKSTLSNLIAGVTM 75 (549)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCC
Confidence 46899999999999999999987654
No 396
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.75 E-value=0.45 Score=52.21 Aligned_cols=26 Identities=19% Similarity=0.281 Sum_probs=22.8
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
-.+++|+|..|.|||||.+.++--..
T Consensus 33 Ge~~~I~G~nGaGKSTLl~~l~G~~~ 58 (282)
T PRK13640 33 GSWTALIGHNGSGKSTISKLINGLLL 58 (282)
T ss_pred CCEEEEECCCCCcHHHHHHHHhcccC
Confidence 46999999999999999999986543
No 397
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=92.74 E-value=1.8 Score=49.06 Aligned_cols=26 Identities=38% Similarity=0.405 Sum_probs=22.7
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
-.+++|+|+.|+|||||.+.++.-.+
T Consensus 31 Gei~gIiG~sGaGKSTLlr~I~gl~~ 56 (343)
T TIGR02314 31 GQIYGVIGASGAGKSTLIRCVNLLER 56 (343)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 46899999999999999999987543
No 398
>PRK00889 adenylylsulfate kinase; Provisional
Probab=92.72 E-value=0.1 Score=52.88 Aligned_cols=26 Identities=35% Similarity=0.530 Sum_probs=23.2
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
..+|+|+|++|+||||+|+.++....
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l~ 29 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKLR 29 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46999999999999999999998654
No 399
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=92.70 E-value=0.26 Score=52.67 Aligned_cols=40 Identities=20% Similarity=0.357 Sum_probs=30.1
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCCCCccccceEEEeeeee
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQW 220 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~~~~F~~~~f~~~v~~w 220 (908)
+..|.++||+|+||||..+.++.+...++. ..+-+|++.-
T Consensus 19 p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~-ppYviNLDPA 58 (366)
T KOG1532|consen 19 PVIILVVGMAGSGKTTFMQRLNSHLHAKKT-PPYVINLDPA 58 (366)
T ss_pred CcEEEEEecCCCCchhHHHHHHHHHhhccC-CCeEEeCCHH
Confidence 678889999999999999999887765542 2444566543
No 400
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=92.70 E-value=2.4 Score=45.69 Aligned_cols=25 Identities=28% Similarity=0.383 Sum_probs=22.2
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDP 204 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~ 204 (908)
-.+++|+|..|+|||||.+.++--.
T Consensus 28 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 52 (255)
T PRK11231 28 GKITALIGPNGCGKSTLLKCFARLL 52 (255)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCc
Confidence 4689999999999999999998654
No 401
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=92.68 E-value=0.35 Score=50.53 Aligned_cols=44 Identities=14% Similarity=0.181 Sum_probs=29.3
Q ss_pred cCCeeEEEecCC---chhH-----HHHHhhhcCCCcEEEEEccchhhhhhcc
Q 002559 274 GKSILILLDDVW---EQDI-----VERFAKLYDNDCKYLVTTRNEAVYEITE 317 (908)
Q Consensus 274 ~kr~LLVLDDV~---~~~~-----~e~l~~~~~~gsrILVTTR~~~va~~~~ 317 (908)
.++-|+++|... +..+ +..+......|+.+|+||.+..++....
T Consensus 107 ~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~~~~~~i~~TH~~~l~~~~~ 158 (204)
T cd03282 107 DGDSLVLIDELGRGTSSADGFAISLAILECLIKKESTVFFATHFRDIAAILG 158 (204)
T ss_pred CCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHHHHhh
Confidence 567899999983 3322 2222233345899999999998876544
No 402
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=92.68 E-value=1.2 Score=46.47 Aligned_cols=57 Identities=12% Similarity=0.131 Sum_probs=36.4
Q ss_pred CHHHHHHHHHHHhccCCeeEEEecCCc---hhHHHHHh----hhcCCCcEEEEEccchhhhhhc
Q 002559 260 DLEYLCCLLQEALYGKSILILLDDVWE---QDIVERFA----KLYDNDCKYLVTTRNEAVYEIT 316 (908)
Q Consensus 260 ~~~~l~~~l~~~L~~kr~LLVLDDV~~---~~~~e~l~----~~~~~gsrILVTTR~~~va~~~ 316 (908)
.-++..-.|.+.|.=++=++.+|..-+ ++...... ..-..|-..|+.|..-..|...
T Consensus 139 GGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~V 202 (240)
T COG1126 139 GGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREV 202 (240)
T ss_pred cHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHh
Confidence 334445567778888888999999864 44443333 3335687777777776555543
No 403
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=92.67 E-value=0.51 Score=53.66 Aligned_cols=26 Identities=46% Similarity=0.555 Sum_probs=22.5
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
-.+++|+|+.|+|||||.+.++--.+
T Consensus 30 Ge~~~llG~sGsGKSTLLr~iaGl~~ 55 (356)
T PRK11650 30 GEFIVLVGPSGCGKSTLLRMVAGLER 55 (356)
T ss_pred CCEEEEECCCCCcHHHHHHHHHCCCC
Confidence 36899999999999999999986543
No 404
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=92.67 E-value=0.08 Score=52.00 Aligned_cols=23 Identities=30% Similarity=0.606 Sum_probs=20.8
Q ss_pred EEEEecCCCChHHHHHHHHhCCC
Q 002559 183 ILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 183 V~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
|.|+|++|+||||+|+.++....
T Consensus 2 i~l~G~~GsGKstla~~la~~l~ 24 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALG 24 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhC
Confidence 68999999999999999998764
No 405
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=92.67 E-value=0.34 Score=58.84 Aligned_cols=25 Identities=20% Similarity=0.353 Sum_probs=21.1
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDP 204 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~ 204 (908)
.++..|.|.+|.||||++..+....
T Consensus 167 ~~~~vItGgpGTGKTt~v~~ll~~l 191 (615)
T PRK10875 167 RRISVISGGPGTGKTTTVAKLLAAL 191 (615)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHH
Confidence 3688999999999999988877543
No 406
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.66 E-value=1.8 Score=45.06 Aligned_cols=26 Identities=38% Similarity=0.441 Sum_probs=22.7
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
-.+++|.|..|+|||||.+.++.-..
T Consensus 24 Ge~~~l~G~nGsGKSTLl~~l~gl~~ 49 (211)
T cd03298 24 GEITAIVGPSGSGKSTLLNLIAGFET 49 (211)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 46899999999999999999986543
No 407
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=92.66 E-value=0.36 Score=56.65 Aligned_cols=51 Identities=29% Similarity=0.217 Sum_probs=35.3
Q ss_pred HHHHHHHHHhcc-CCceEEEEEecCCCChHHHHHHHHhCCCCccccceEEEee
Q 002559 166 KSKFLRKLLEQE-ETHQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGF 217 (908)
Q Consensus 166 ~~~~l~~LL~~~-~~~~vV~I~GmgGiGKTtLA~~v~~~~~~~F~~~~f~~~v 217 (908)
-...++.+|..+ ..-.++.|.|.+|+|||||+.+++.....+ ...++|++.
T Consensus 79 Gi~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~-g~kvlYvs~ 130 (454)
T TIGR00416 79 GFGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKN-QMKVLYVSG 130 (454)
T ss_pred CcHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhc-CCcEEEEEC
Confidence 345666777543 235799999999999999999997765432 134666543
No 408
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=92.61 E-value=0.57 Score=49.42 Aligned_cols=61 Identities=18% Similarity=0.241 Sum_probs=38.7
Q ss_pred CCccccccccCCCcCccHHHHHHHHHh---ccCCceEEEEEecCCCChHHHHHHHHhCCCCccc
Q 002559 149 VPTRLKVKAEQGYPISSKSKFLRKLLE---QEETHQVILIVGLSGIGKSCLARQVASDPPERFV 209 (908)
Q Consensus 149 ~~~~~~~~~~~~~g~e~~~~~l~~LL~---~~~~~~vV~I~GmgGiGKTtLA~~v~~~~~~~F~ 209 (908)
+|.+..+.-...+|.+...+.+..-.. .+....-|.+||--|+|||+|++++.+.+..+..
T Consensus 51 v~~~~~i~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~gl 114 (287)
T COG2607 51 VPDPDPIDLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADEGL 114 (287)
T ss_pred CCCCCCcCHHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhcCC
Confidence 333333333445577755554433221 2233567889999999999999999988776554
No 409
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=92.61 E-value=0.073 Score=56.28 Aligned_cols=24 Identities=33% Similarity=0.369 Sum_probs=21.6
Q ss_pred EEEEEecCCCChHHHHHHHHhCCC
Q 002559 182 VILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 182 vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
+|+|.|.+|+||||+|+.+...+.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHh
Confidence 589999999999999999988764
No 410
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=92.58 E-value=0.076 Score=54.61 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=21.3
Q ss_pred EEEEEecCCCChHHHHHHHHhCC
Q 002559 182 VILIVGLSGIGKSCLARQVASDP 204 (908)
Q Consensus 182 vV~I~GmgGiGKTtLA~~v~~~~ 204 (908)
+|+|.|.+|+||||||+.++...
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999875
No 411
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=92.57 E-value=3.6 Score=49.20 Aligned_cols=139 Identities=19% Similarity=0.201 Sum_probs=67.4
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCCCCccccceEEEeee---eeecccc----ccCCcchHHHHH-----HHHHHHHHHH
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFG---QWCSRAA----CNGSKSDYQKRL-----ARKISKFLVQ 247 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~~~~F~~~~f~~~v~---~wv~~~~----~~~s~~~~~~~l-----~~~i~~~L~~ 247 (908)
-..|+|+|+.|+|||||.+.+....... .+.+...-. .++.... ...+.-....+. -..+...|..
T Consensus 348 g~riaiiG~NG~GKSTLlk~l~g~~~~~--~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~ 425 (530)
T COG0488 348 GDRIAIVGPNGAGKSTLLKLLAGELGPL--SGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGR 425 (530)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhhcccC--CceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHH
Confidence 4579999999999999999996654322 111110000 0110000 000000000000 1233333444
Q ss_pred hccccccCC----CCCCHHHHHHHHHHHhccCCeeEEEecCCchhH---HHHHhhhcC-CCcEEEEEccchhhhhhcccc
Q 002559 248 IGFWKKIKD----ENSDLEYLCCLLQEALYGKSILILLDDVWEQDI---VERFAKLYD-NDCKYLVTTRNEAVYEITEAE 319 (908)
Q Consensus 248 lg~~~~~~~----~~~~~~~l~~~l~~~L~~kr~LLVLDDV~~~~~---~e~l~~~~~-~gsrILVTTR~~~va~~~~~~ 319 (908)
.+....... ..+.-+...-.+...+-.+.=+||||.--+.-+ .+.+..++. -...||+.|.++.........
T Consensus 426 f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f~Gtvl~VSHDr~Fl~~va~~ 505 (530)
T COG0488 426 FGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDFEGTVLLVSHDRYFLDRVATR 505 (530)
T ss_pred cCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcce
Confidence 443211110 111222333445555667888999998875533 344444342 244688889998766655443
Q ss_pred e
Q 002559 320 K 320 (908)
Q Consensus 320 ~ 320 (908)
.
T Consensus 506 i 506 (530)
T COG0488 506 I 506 (530)
T ss_pred E
Confidence 3
No 412
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=92.55 E-value=0.52 Score=53.24 Aligned_cols=49 Identities=29% Similarity=0.239 Sum_probs=32.8
Q ss_pred HHHHHHhccCCeeEEEecCCch-------hHHHHHhhhcCCCcEEEEEccchhhhh
Q 002559 266 CLLQEALYGKSILILLDDVWEQ-------DIVERFAKLYDNDCKYLVTTRNEAVYE 314 (908)
Q Consensus 266 ~~l~~~L~~kr~LLVLDDV~~~-------~~~e~l~~~~~~gsrILVTTR~~~va~ 314 (908)
-.+...|-.++=+|+||..-+. ..|+.+...-..|..||+||.+.+...
T Consensus 181 v~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~ 236 (340)
T PRK13536 181 LTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAE 236 (340)
T ss_pred HHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHH
Confidence 3455566678889999998643 234444443345788999999876544
No 413
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.52 E-value=2.3 Score=46.26 Aligned_cols=25 Identities=32% Similarity=0.454 Sum_probs=22.1
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDP 204 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~ 204 (908)
-.+++|+|..|+|||||++.++-..
T Consensus 39 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 63 (269)
T PRK14259 39 GKVTALIGPSGCGKSTVLRSLNRMN 63 (269)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccc
Confidence 4689999999999999999998653
No 414
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=92.51 E-value=0.3 Score=55.81 Aligned_cols=49 Identities=37% Similarity=0.351 Sum_probs=33.7
Q ss_pred HHHHHHHhcc-CCceEEEEEecCCCChHHHHHHHHhCCCCccccceEEEee
Q 002559 168 KFLRKLLEQE-ETHQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGF 217 (908)
Q Consensus 168 ~~l~~LL~~~-~~~~vV~I~GmgGiGKTtLA~~v~~~~~~~F~~~~f~~~v 217 (908)
..++.+|..+ ..-.++.|.|.+|+|||||+.+++......- ..++|++.
T Consensus 69 ~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~~g-~~VlYvs~ 118 (372)
T cd01121 69 EELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRG-GKVLYVSG 118 (372)
T ss_pred HHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcC-CeEEEEEC
Confidence 4556666543 2357999999999999999999987654321 34555543
No 415
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=92.50 E-value=2.6 Score=46.80 Aligned_cols=26 Identities=23% Similarity=0.419 Sum_probs=22.7
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
-.+++|.|+.|.|||||.+.++-...
T Consensus 28 Gei~~l~G~NGaGKTTLl~~l~Gl~~ 53 (301)
T TIGR03522 28 GRIVGFLGPNGAGKSTTMKIITGYLP 53 (301)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCC
Confidence 46899999999999999999986543
No 416
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=92.49 E-value=2.9 Score=43.43 Aligned_cols=25 Identities=36% Similarity=0.296 Sum_probs=22.1
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDP 204 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~ 204 (908)
-.+++|.|..|.|||||.+.++.-.
T Consensus 34 G~~~~i~G~nGsGKSTLl~~l~Gl~ 58 (207)
T cd03369 34 GEKIGIVGRTGAGKSTLILALFRFL 58 (207)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccc
Confidence 4689999999999999999998654
No 417
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.48 E-value=1.4 Score=47.96 Aligned_cols=26 Identities=35% Similarity=0.359 Sum_probs=22.8
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
-.+++|.|..|.|||||.+.++.-..
T Consensus 35 Ge~~~I~G~nGsGKSTLl~~i~Gl~~ 60 (269)
T PRK13648 35 GQWTSIVGHNGSGKSTIAKLMIGIEK 60 (269)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 46999999999999999999987543
No 418
>PRK13409 putative ATPase RIL; Provisional
Probab=92.45 E-value=1.5 Score=53.36 Aligned_cols=135 Identities=19% Similarity=0.227 Sum_probs=66.8
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCCCCccccceEEEeeee-eecccccc---CCcchHHHHHH------HHHHHHHHHhc
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQ-WCSRAACN---GSKSDYQKRLA------RKISKFLVQIG 249 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~~~~F~~~~f~~~v~~-wv~~~~~~---~s~~~~~~~l~------~~i~~~L~~lg 249 (908)
-.+++|+|..|+|||||++.++-..+.. .+.+++++.. +++..... .+..+...... ....+.+..++
T Consensus 365 Geiv~l~G~NGsGKSTLlk~L~Gl~~p~--~G~I~~~~~i~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~ 442 (590)
T PRK13409 365 GEVIGIVGPNGIGKTTFAKLLAGVLKPD--EGEVDPELKISYKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQ 442 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCC--ceEEEEeeeEEEecccccCCCCCcHHHHHHHHhhhcChHHHHHHHHHHCC
Confidence 4689999999999999999999765421 2233322211 11111000 00111110000 01122333333
Q ss_pred ccc---ccCCCCCCHHHHHHHHHHHhccCCeeEEEecCCch---hH----HHHHhhhcC-CCcEEEEEccchhhhhhc
Q 002559 250 FWK---KIKDENSDLEYLCCLLQEALYGKSILILLDDVWEQ---DI----VERFAKLYD-NDCKYLVTTRNEAVYEIT 316 (908)
Q Consensus 250 ~~~---~~~~~~~~~~~l~~~l~~~L~~kr~LLVLDDV~~~---~~----~e~l~~~~~-~gsrILVTTR~~~va~~~ 316 (908)
... ......+.-+...-.+...|....=+++||.--.. .. ++.+..... .|..||++|.+...+...
T Consensus 443 l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~ 520 (590)
T PRK13409 443 LERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYI 520 (590)
T ss_pred CHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHh
Confidence 311 11111222333344466667778889999987533 22 222223222 377889999887665543
No 419
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=92.44 E-value=1.5 Score=47.25 Aligned_cols=61 Identities=15% Similarity=0.170 Sum_probs=40.5
Q ss_pred CHHHHHHHHHHHhccCCeeEEEecCCch-------hHHHHHhhhc-CCCcEEEEEccchhhhhhcccce
Q 002559 260 DLEYLCCLLQEALYGKSILILLDDVWEQ-------DIVERFAKLY-DNDCKYLVTTRNEAVYEITEAEK 320 (908)
Q Consensus 260 ~~~~l~~~l~~~L~~kr~LLVLDDV~~~-------~~~e~l~~~~-~~gsrILVTTR~~~va~~~~~~~ 320 (908)
.-+...-.+...|..+.=+|+||.--+. +.++.+...- ..|..||+++.+.+.+..++.+.
T Consensus 141 GGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~ 209 (258)
T COG1120 141 GGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHL 209 (258)
T ss_pred hhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEE
Confidence 4445556677888888888999986543 2233333322 35788999999998877555433
No 420
>PRK13946 shikimate kinase; Provisional
Probab=92.43 E-value=0.097 Score=53.63 Aligned_cols=26 Identities=35% Similarity=0.603 Sum_probs=23.6
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
.+.|.++|++|+||||+|+.+++++.
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg 35 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLG 35 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 46799999999999999999999875
No 421
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=92.42 E-value=3.9 Score=43.36 Aligned_cols=43 Identities=28% Similarity=0.443 Sum_probs=33.4
Q ss_pred cCccHHHHHHHHHhcc------------CCceEEEEEecCCCChHHHHHHHHhCC
Q 002559 162 PISSKSKFLRKLLEQE------------ETHQVILIVGLSGIGKSCLARQVASDP 204 (908)
Q Consensus 162 g~e~~~~~l~~LL~~~------------~~~~vV~I~GmgGiGKTtLA~~v~~~~ 204 (908)
|.+...+.|++..+-. ..++=|.++|++|.|||-||++||++-
T Consensus 151 gLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht 205 (404)
T KOG0728|consen 151 GLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHT 205 (404)
T ss_pred cHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhc
Confidence 5677777777765421 236778899999999999999999864
No 422
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=92.41 E-value=0.53 Score=48.28 Aligned_cols=117 Identities=17% Similarity=0.175 Sum_probs=61.6
Q ss_pred HHHHHHHHHhccCCceEEEEEecCCCChHHHHHHHHhCCCCccccceEEE-eeeeeeccccccCCcchHHHHHHHHHHHH
Q 002559 166 KSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPPERFVGGAVEL-GFGQWCSRAACNGSKSDYQKRLARKISKF 244 (908)
Q Consensus 166 ~~~~l~~LL~~~~~~~vV~I~GmgGiGKTtLA~~v~~~~~~~F~~~~f~~-~v~~wv~~~~~~~s~~~~~~~l~~~i~~~ 244 (908)
..+.+...+.. -..++|+|..|+|||||++.+....... .+++.+ +.... ..+. ....
T Consensus 14 ~~~~l~~~v~~---g~~i~I~G~tGSGKTTll~aL~~~i~~~--~~~i~ied~~E~--------~~~~------~~~~-- 72 (186)
T cd01130 14 QAAYLWLAVEA---RKNILISGGTGSGKTTLLNALLAFIPPD--ERIITIEDTAEL--------QLPH------PNWV-- 72 (186)
T ss_pred HHHHHHHHHhC---CCEEEEECCCCCCHHHHHHHHHhhcCCC--CCEEEECCcccc--------CCCC------CCEE--
Confidence 34445544443 3689999999999999999998765432 122211 11000 0000 0000
Q ss_pred HHHhccccccCCCCCCHHHHHHHHHHHhccCCeeEEEecCCchhHHHHHhhhcCCCcE-EEEEc
Q 002559 245 LVQIGFWKKIKDENSDLEYLCCLLQEALYGKSILILLDDVWEQDIVERFAKLYDNDCK-YLVTT 307 (908)
Q Consensus 245 L~~lg~~~~~~~~~~~~~~l~~~l~~~L~~kr~LLVLDDV~~~~~~e~l~~~~~~gsr-ILVTT 307 (908)
++... .............+.++..++..+=.++++.+.+.+.++.+.. ...|.. ++.|.
T Consensus 73 --~~~~~-~~~~~~~~~~~~~~~l~~~lR~~pd~i~igEir~~ea~~~~~a-~~tGh~g~~~T~ 132 (186)
T cd01130 73 --RLVTR-PGNVEGSGEVTMADLLRSALRMRPDRIIVGEVRGGEALDLLQA-MNTGHPGGMTTI 132 (186)
T ss_pred --EEEEe-cCCCCCCCccCHHHHHHHHhccCCCEEEEEccCcHHHHHHHHH-HhcCCCCceeee
Confidence 00000 0000011122344566667777788899999999988775543 355655 44333
No 423
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=92.41 E-value=0.48 Score=53.85 Aligned_cols=26 Identities=31% Similarity=0.456 Sum_probs=22.6
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
-.+++|+|+.|+|||||.+.++--..
T Consensus 30 Ge~~~l~GpsGsGKSTLLr~iaGl~~ 55 (353)
T TIGR03265 30 GEFVCLLGPSGCGKTTLLRIIAGLER 55 (353)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Confidence 46899999999999999999986543
No 424
>PRK14528 adenylate kinase; Provisional
Probab=92.39 E-value=0.85 Score=46.81 Aligned_cols=25 Identities=24% Similarity=0.412 Sum_probs=21.7
Q ss_pred eEEEEEecCCCChHHHHHHHHhCCC
Q 002559 181 QVILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 181 ~vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
+.|.|.|++|+||||+|+.++....
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~ 26 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLS 26 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4688999999999999999987653
No 425
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=92.39 E-value=0.36 Score=54.44 Aligned_cols=50 Identities=22% Similarity=0.137 Sum_probs=33.9
Q ss_pred HHHHHHhcc-CCceEEEEEecCCCChHHHHHHHHhCCC-----CccccceEEEeee
Q 002559 169 FLRKLLEQE-ETHQVILIVGLSGIGKSCLARQVASDPP-----ERFVGGAVELGFG 218 (908)
Q Consensus 169 ~l~~LL~~~-~~~~vV~I~GmgGiGKTtLA~~v~~~~~-----~~F~~~~f~~~v~ 218 (908)
.+..+|..+ ..-.++-|+|.+|+|||+|+..++-... ......++|+|..
T Consensus 114 ~LD~lLgGGi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE 169 (344)
T PLN03187 114 ALDELLGGGIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTE 169 (344)
T ss_pred hHHhhcCCCCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcC
Confidence 455666653 2357888999999999999998863221 1223567877763
No 426
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=92.39 E-value=0.48 Score=54.19 Aligned_cols=26 Identities=38% Similarity=0.519 Sum_probs=22.6
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
-.+++|+|..|+|||||.+.++--.+
T Consensus 29 Ge~~~l~G~nGsGKSTLL~~iaGl~~ 54 (369)
T PRK11000 29 GEFVVFVGPSGCGKSTLLRMIAGLED 54 (369)
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 36899999999999999999986543
No 427
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.38 E-value=2.3 Score=49.93 Aligned_cols=227 Identities=25% Similarity=0.329 Sum_probs=146.3
Q ss_pred hhcCchhHHHhhhcCCCCCCccccHHHHHhhhhhcCCh----hhHHHHhhhccHHHHHhhcCcchhhhhHHHHHHHHHHH
Q 002559 620 ETTGAVDKLAGLLQKSEDPMIQTDILTVLTKLAEFGTP----ETVDKVLQSIPFDKLATLLSYDAKEWHENMFTILMSLA 695 (908)
Q Consensus 620 ~~~g~~~kL~~l~~~~~~~~t~~~~~~~l~~l~e~~~~----~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 695 (908)
...|.+..|-.++.......++.+..-.|+.++.-.+. .....++.- +..|+-..+++.+.+.+-+++-|.
T Consensus 191 l~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~-----L~~ll~~~D~~Vl~Da~WAlsyLs 265 (514)
T KOG0166|consen 191 LSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPA-----LLRLLHSTDEEVLTDACWALSYLT 265 (514)
T ss_pred HhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHH-----HHHHHhcCCHHHHHHHHHHHHHHh
Confidence 34677777777766655556777788888888777742 333443433 555888899999988888888887
Q ss_pred hhcchHHHHHHHHhhhhHHHHHHhhcchhHHHHHHHHHHHHHHHhcCCCccc-------ccCCCccccccccccccccee
Q 002559 696 KVGKSKAVEKMFAFEIDKNLIKLLENGSEVVQHHAIVTLKAFYELAGSPANA-------SLRPANLNLLPWQVRLRLERF 768 (908)
Q Consensus 696 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~ 768 (908)
+-++- .-.-++.+|.=.+|.+||+.-+--+|--||-++ |+=+.| .+..|.|.+||
T Consensus 266 dg~ne-~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRai-------GNIvtG~d~QTq~vi~~~~L~~l~---------- 327 (514)
T KOG0166|consen 266 DGSNE-KIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAI-------GNIVTGSDEQTQVVINSGALPVLS---------- 327 (514)
T ss_pred cCChH-HHHHHHHccchHHHHHHHcCCCcccccHHHhhc-------cceeeccHHHHHHHHhcChHHHHH----------
Confidence 76553 444556679888899999999887774443322 322222 23333333322
Q ss_pred EeecCCCCCCCCcccHHHHHHHHhCCCchh-HHHHhhhhhHHHHhhcchhhHHHHhccchHHHHHHHhhccCCCCcccch
Q 002559 769 IISDRTVPPSPKSQTFEDVIHRLLDGDNKQ-VQGATQDLIPFLEKAGELKIRDMIIKSPLIAKLSELLQYAHPEQNSVRS 847 (908)
Q Consensus 769 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 847 (908)
+ ++..+.++ |-...-=.+.=+- |+.+.=.+.++.++++-.|-.+|+..+ =.+|.
T Consensus 328 --------------------~-ll~~s~~~~ikkEAcW~iSNIt-AG~~~qiqaVida~l~p~Li~~l~~~e---f~~rK 382 (514)
T KOG0166|consen 328 --------------------N-LLSSSPKESIKKEACWTISNIT-AGNQEQIQAVIDANLIPVLINLLQTAE---FDIRK 382 (514)
T ss_pred --------------------H-HhccCcchhHHHHHHHHHHHhh-cCCHHHHHHHHHcccHHHHHHHHhccc---hHHHH
Confidence 1 22212111 1111111112121 355544456677899999999998887 57999
Q ss_pred hhHHHHHHhhhcCCch-HHHHHhhcCChHHHHHhhccCcchhhhhcchh
Q 002559 848 ESAFLLTKLACAGGEP-CIKKFLEYDIIPELVKMMQCCVPEIQDSAYAA 895 (908)
Q Consensus 848 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 895 (908)
|+||++.++. +||.| -|+-+.+.|||+.|.++.-|.-..+...+..|
T Consensus 383 EAawaIsN~t-s~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~ 430 (514)
T KOG0166|consen 383 EAAWAISNLT-SSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDG 430 (514)
T ss_pred HHHHHHHhhc-ccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHH
Confidence 9999999987 66655 56777899999999999999876654333333
No 428
>PRK02496 adk adenylate kinase; Provisional
Probab=92.37 E-value=0.61 Score=47.53 Aligned_cols=24 Identities=25% Similarity=0.353 Sum_probs=21.0
Q ss_pred EEEEEecCCCChHHHHHHHHhCCC
Q 002559 182 VILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 182 vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
.+.|.|++|+||||+|+.++....
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~ 26 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLH 26 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999987653
No 429
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=92.36 E-value=1.7 Score=46.30 Aligned_cols=25 Identities=20% Similarity=0.473 Sum_probs=22.2
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDP 204 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~ 204 (908)
-.+++|.|..|.|||||.+.++-..
T Consensus 28 Ge~~~l~G~nGsGKSTLl~~l~G~~ 52 (242)
T TIGR03411 28 GELRVIIGPNGAGKTTMMDVITGKT 52 (242)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4689999999999999999998654
No 430
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=92.34 E-value=0.2 Score=53.57 Aligned_cols=41 Identities=27% Similarity=0.393 Sum_probs=31.1
Q ss_pred cHHHHHHHHHhccCCceEEEEEecCCCChHHHHHHHHhCCC
Q 002559 165 SKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 165 ~~~~~l~~LL~~~~~~~vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
...+.+..+.....+..+|+|.|+||+|||||..++...+.
T Consensus 14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~ 54 (266)
T PF03308_consen 14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELR 54 (266)
T ss_dssp HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHh
Confidence 44566777777666788999999999999999988876554
No 431
>PRK05439 pantothenate kinase; Provisional
Probab=92.32 E-value=0.15 Score=56.46 Aligned_cols=38 Identities=26% Similarity=0.291 Sum_probs=28.6
Q ss_pred HHHHHHHh--ccCCceEEEEEecCCCChHHHHHHHHhCCC
Q 002559 168 KFLRKLLE--QEETHQVILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 168 ~~l~~LL~--~~~~~~vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
..+..++. ..+.+-+|+|.|.+|+||||+|+.+.....
T Consensus 72 ~~~~~fl~~~~~~~~~iIgIaG~~gsGKSTla~~L~~~l~ 111 (311)
T PRK05439 72 AALEQFLGKNGQKVPFIIGIAGSVAVGKSTTARLLQALLS 111 (311)
T ss_pred HHHHHHhcccCCCCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34444554 233478999999999999999999987553
No 432
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=92.32 E-value=0.055 Score=51.76 Aligned_cols=27 Identities=33% Similarity=0.607 Sum_probs=19.7
Q ss_pred EEEEecCCCChHHHHHHHHhCCCCccc
Q 002559 183 ILIVGLSGIGKSCLARQVASDPPERFV 209 (908)
Q Consensus 183 V~I~GmgGiGKTtLA~~v~~~~~~~F~ 209 (908)
|.|+|.+|+||||+|+.++......|.
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~f~ 28 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLSFK 28 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--EE
T ss_pred EeeECCCccHHHHHHHHHHHHcCCcee
Confidence 679999999999999999998877664
No 433
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=92.31 E-value=0.066 Score=49.74 Aligned_cols=23 Identities=52% Similarity=0.699 Sum_probs=19.9
Q ss_pred EEEEecCCCChHHHHHHHHhCCC
Q 002559 183 ILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 183 V~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
|-|+|.+|+|||+||..++.++.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 45899999999999999887654
No 434
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=92.29 E-value=0.091 Score=53.65 Aligned_cols=24 Identities=33% Similarity=0.534 Sum_probs=21.7
Q ss_pred EEEEEecCCCChHHHHHHHHhCCC
Q 002559 182 VILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 182 vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
+|+|.|.+|+||||||..+.....
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~ 24 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLR 24 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999998754
No 435
>COG3910 Predicted ATPase [General function prediction only]
Probab=92.28 E-value=2.5 Score=43.12 Aligned_cols=58 Identities=19% Similarity=0.307 Sum_probs=38.7
Q ss_pred HHHHHHHHHHhccCCeeEEEecCCch----hHHHHH---hhhcCCCcEEEEEccchhhhhhcccce
Q 002559 262 EYLCCLLQEALYGKSILILLDDVWEQ----DIVERF---AKLYDNDCKYLVTTRNEAVYEITEAEK 320 (908)
Q Consensus 262 ~~l~~~l~~~L~~kr~LLVLDDV~~~----~~~e~l---~~~~~~gsrILVTTR~~~va~~~~~~~ 320 (908)
+.....+.+++.++ =+-|||.-... .|++.+ ...-..|+.|||.|.++-+....++..
T Consensus 134 Esf~~i~~~rf~~~-GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPiLlAiP~A~I 198 (233)
T COG3910 134 ESFLAIFHNRFNGQ-GIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPILLAIPGAEI 198 (233)
T ss_pred hHHHHHHHHHhccC-ceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChhheeCCCcEE
Confidence 44566777777666 46788987643 344433 343467899999999998777666543
No 436
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=92.27 E-value=0.11 Score=53.22 Aligned_cols=25 Identities=28% Similarity=0.469 Sum_probs=22.1
Q ss_pred eEEEEEecCCCChHHHHHHHHhCCC
Q 002559 181 QVILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 181 ~vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
.+++|+|+.|+|||||++.++....
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~~ 27 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQREQ 27 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCC
Confidence 4789999999999999999987654
No 437
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=92.26 E-value=0.21 Score=62.56 Aligned_cols=108 Identities=20% Similarity=0.216 Sum_probs=60.1
Q ss_pred cCCeeEEEecCCch---hHHH----HHhhhc-CCCcEEEEEccchhhhhhcccce------ecCChhhHHHHHHHHhhhc
Q 002559 274 GKSILILLDDVWEQ---DIVE----RFAKLY-DNDCKYLVTTRNEAVYEITEAEK------VELSKDDIMEISKSILLYH 339 (908)
Q Consensus 274 ~kr~LLVLDDV~~~---~~~e----~l~~~~-~~gsrILVTTR~~~va~~~~~~~------~~L~~~ea~~Lf~~~~~~~ 339 (908)
..+-|+++|..-.. .+-. .+...+ ..|+.+|+||.+..+........ +.++.+. .. +.+
T Consensus 406 ~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~el~~~~~~~~~v~~~~~~~d~~~-l~------~~Y 478 (782)
T PRK00409 406 DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKELKALMYNREGVENASVEFDEET-LR------PTY 478 (782)
T ss_pred CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHHHHHHHhcCCCeEEEEEEEecCc-Cc------EEE
Confidence 46789999998632 2222 222222 45889999999988766433211 1233221 10 111
Q ss_pred ccccCcchHHHHHHHHhHhCCchhhHhHhhhhhhccCCHHHHHHHHHHhch
Q 002559 340 SLLAEEELPAAAESLLERCGHHPLTVAVMGKALRKELRSEKWEKAITDLST 390 (908)
Q Consensus 340 ~~~~~~~l~~i~~~Iv~~cgGLPLAI~~ig~~L~~~~~~~eW~~~l~~L~~ 390 (908)
.......-...+-.|++++ |+|-.+.--|..+... .....+.++++|..
T Consensus 479 kl~~G~~g~S~a~~iA~~~-Glp~~ii~~A~~~~~~-~~~~~~~li~~l~~ 527 (782)
T PRK00409 479 RLLIGIPGKSNAFEIAKRL-GLPENIIEEAKKLIGE-DKEKLNELIASLEE 527 (782)
T ss_pred EEeeCCCCCcHHHHHHHHh-CcCHHHHHHHHHHHhh-hhhHHHHHHHHHHH
Confidence 1111011124567777777 7887777777776643 34567777777654
No 438
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=92.25 E-value=0.12 Score=51.38 Aligned_cols=28 Identities=43% Similarity=0.533 Sum_probs=23.9
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCCCCc
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDPPER 207 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~~~~ 207 (908)
..+|-|+|.+|+||||||+++.+++...
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~ 29 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFAR 29 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 3588999999999999999999887643
No 439
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=92.24 E-value=0.66 Score=51.74 Aligned_cols=50 Identities=18% Similarity=0.187 Sum_probs=34.0
Q ss_pred HHHHHHhcc-CCceEEEEEecCCCChHHHHHHHHhCC--C---CccccceEEEeee
Q 002559 169 FLRKLLEQE-ETHQVILIVGLSGIGKSCLARQVASDP--P---ERFVGGAVELGFG 218 (908)
Q Consensus 169 ~l~~LL~~~-~~~~vV~I~GmgGiGKTtLA~~v~~~~--~---~~F~~~~f~~~v~ 218 (908)
.++.+|..+ ..-.++-|+|.+|+|||+|+..++-.. . ..-...++|+|..
T Consensus 84 ~LD~lLgGGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE 139 (313)
T TIGR02238 84 ALDGILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTE 139 (313)
T ss_pred HHHHHhCCCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcC
Confidence 466667643 235788899999999999999876322 1 1123567877753
No 440
>PRK11823 DNA repair protein RadA; Provisional
Probab=92.23 E-value=0.39 Score=56.32 Aligned_cols=51 Identities=31% Similarity=0.268 Sum_probs=35.3
Q ss_pred HHHHHHHHHhcc-CCceEEEEEecCCCChHHHHHHHHhCCCCccccceEEEee
Q 002559 166 KSKFLRKLLEQE-ETHQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGF 217 (908)
Q Consensus 166 ~~~~l~~LL~~~-~~~~vV~I~GmgGiGKTtLA~~v~~~~~~~F~~~~f~~~v 217 (908)
-...++.+|..+ ..-.++.|.|.+|+|||||+.+++.....+ ...++|++.
T Consensus 65 Gi~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~-g~~vlYvs~ 116 (446)
T PRK11823 65 GIGELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAA-GGKVLYVSG 116 (446)
T ss_pred CcHHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEEEc
Confidence 344666777643 235799999999999999999998765422 234666554
No 441
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=92.18 E-value=1.7 Score=51.77 Aligned_cols=25 Identities=28% Similarity=0.430 Sum_probs=22.4
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDP 204 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~ 204 (908)
-.+++|+|..|+|||||.+.++--.
T Consensus 30 Ge~~~l~G~NGsGKSTLl~~l~G~~ 54 (501)
T PRK10762 30 GRVMALVGENGAGKSTMMKVLTGIY 54 (501)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCC
Confidence 4799999999999999999998654
No 442
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=92.17 E-value=0.9 Score=55.96 Aligned_cols=125 Identities=13% Similarity=0.147 Sum_probs=71.7
Q ss_pred cCCCcCccHHHHHHHHHhcc-CCceEEEEEecCCCChHHHHHHHHhCCC-CccccceEEEeeeeeeccccccCCcchHHH
Q 002559 158 EQGYPISSKSKFLRKLLEQE-ETHQVILIVGLSGIGKSCLARQVASDPP-ERFVGGAVELGFGQWCSRAACNGSKSDYQK 235 (908)
Q Consensus 158 ~~~~g~e~~~~~l~~LL~~~-~~~~vV~I~GmgGiGKTtLA~~v~~~~~-~~F~~~~f~~~v~~wv~~~~~~~s~~~~~~ 235 (908)
.+..||+++.+.+...|... .+.+ .++|.+|+|||++|.-++.++. .+.+..- -+.... + -
T Consensus 170 DPvIGRd~EI~r~iqIL~RR~KNNP--vLiGEpGVGKTAIvEGLA~rIv~g~VP~~L--~~~~i~--------s-----L 232 (786)
T COG0542 170 DPVIGRDEEIRRTIQILSRRTKNNP--VLVGEPGVGKTAIVEGLAQRIVNGDVPESL--KDKRIY--------S-----L 232 (786)
T ss_pred CCCcChHHHHHHHHHHHhccCCCCC--eEecCCCCCHHHHHHHHHHHHhcCCCCHHH--cCCEEE--------E-----e
Confidence 56779998888888877653 2222 3689999999999998888764 2222110 000000 0 0
Q ss_pred HHHHHHHHHHHHhccccccCCCCCCHHHHHHHHHHHhc-cCCeeEEEecCCc-----------hhHHHHHhhhcCCCc--
Q 002559 236 RLARKISKFLVQIGFWKKIKDENSDLEYLCCLLQEALY-GKSILILLDDVWE-----------QDIVERFAKLYDNDC-- 301 (908)
Q Consensus 236 ~l~~~i~~~L~~lg~~~~~~~~~~~~~~l~~~l~~~L~-~kr~LLVLDDV~~-----------~~~~e~l~~~~~~gs-- 301 (908)
.+..-+ ....-..+.++....+.+.++ .+++.|++|.+.. .+.-+.++|.+..|.
T Consensus 233 D~g~Lv-----------AGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGeL~ 301 (786)
T COG0542 233 DLGSLV-----------AGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGELR 301 (786)
T ss_pred cHHHHh-----------ccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcCCeE
Confidence 111111 122233455555555544444 4589999999853 234556667777775
Q ss_pred EEEEEccch
Q 002559 302 KYLVTTRNE 310 (908)
Q Consensus 302 rILVTTR~~ 310 (908)
.|=.||=++
T Consensus 302 ~IGATT~~E 310 (786)
T COG0542 302 CIGATTLDE 310 (786)
T ss_pred EEEeccHHH
Confidence 455666544
No 443
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=92.16 E-value=0.088 Score=52.56 Aligned_cols=22 Identities=32% Similarity=0.594 Sum_probs=20.0
Q ss_pred EEEEecCCCChHHHHHHHHhCC
Q 002559 183 ILIVGLSGIGKSCLARQVASDP 204 (908)
Q Consensus 183 V~I~GmgGiGKTtLA~~v~~~~ 204 (908)
|.|+|++|+||||+|+.+.+..
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999876
No 444
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=92.15 E-value=0.17 Score=53.67 Aligned_cols=24 Identities=29% Similarity=0.404 Sum_probs=20.8
Q ss_pred CceEEEEEecCCCChHHHHHHHHh
Q 002559 179 THQVILIVGLSGIGKSCLARQVAS 202 (908)
Q Consensus 179 ~~~vV~I~GmgGiGKTtLA~~v~~ 202 (908)
+.+++.|+|+.|.||||+.+.+..
T Consensus 29 ~~~~~~l~G~n~~GKstll~~i~~ 52 (222)
T cd03285 29 KSRFLIITGPNMGGKSTYIRQIGV 52 (222)
T ss_pred CCeEEEEECCCCCChHHHHHHHHH
Confidence 357999999999999999888763
No 445
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=92.14 E-value=0.52 Score=51.54 Aligned_cols=27 Identities=33% Similarity=0.578 Sum_probs=23.4
Q ss_pred CceEEEEEecCCCChHHHHHHHHhCCC
Q 002559 179 THQVILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 179 ~~~vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
..++|+++|++|+||||++..++....
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~ 97 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLK 97 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH
Confidence 468999999999999999988887654
No 446
>PRK00300 gmk guanylate kinase; Provisional
Probab=92.13 E-value=0.11 Score=53.92 Aligned_cols=26 Identities=35% Similarity=0.567 Sum_probs=23.1
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
..+|+|+|++|+||||||+.++....
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 46899999999999999999998653
No 447
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.12 E-value=2.1 Score=46.89 Aligned_cols=26 Identities=31% Similarity=0.411 Sum_probs=22.8
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
-.+++|+|..|.|||||++.++-...
T Consensus 30 Ge~~~i~G~NGsGKSTLl~~l~Gl~~ 55 (277)
T PRK13652 30 NSRIAVIGPNGAGKSTLFRHFNGILK 55 (277)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 46999999999999999999986543
No 448
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=92.12 E-value=1.9 Score=44.53 Aligned_cols=25 Identities=36% Similarity=0.481 Sum_probs=22.5
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDP 204 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~ 204 (908)
-.+++|.|..|.|||||.+.++.-.
T Consensus 35 Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 35 GELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4689999999999999999998765
No 449
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=92.10 E-value=2.3 Score=49.20 Aligned_cols=26 Identities=35% Similarity=0.528 Sum_probs=22.8
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
-.+++|+|..|+|||||.+.++.-..
T Consensus 54 Gei~~LvG~NGsGKSTLLr~I~Gl~~ 79 (400)
T PRK10070 54 GEIFVIMGLSGSGKSTMVRLLNRLIE 79 (400)
T ss_pred CCEEEEECCCCchHHHHHHHHHcCCC
Confidence 46899999999999999999987553
No 450
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=92.07 E-value=2.8 Score=43.43 Aligned_cols=26 Identities=31% Similarity=0.448 Sum_probs=22.9
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
-.+++|.|..|.|||||.+.++.-..
T Consensus 31 G~~~~i~G~nG~GKSTLl~~i~G~~~ 56 (204)
T cd03250 31 GELVAIVGPVGSGKSSLLSALLGELE 56 (204)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCcCC
Confidence 46899999999999999999987654
No 451
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=92.05 E-value=0.11 Score=52.54 Aligned_cols=25 Identities=40% Similarity=0.594 Sum_probs=22.5
Q ss_pred eEEEEEecCCCChHHHHHHHHhCCC
Q 002559 181 QVILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 181 ~vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
..|.|+|+.|+||||||+.+++...
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~l~ 29 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHcC
Confidence 4689999999999999999998764
No 452
>COG1084 Predicted GTPase [General function prediction only]
Probab=92.02 E-value=1.4 Score=48.55 Aligned_cols=27 Identities=26% Similarity=0.564 Sum_probs=23.5
Q ss_pred cCCceEEEEEecCCCChHHHHHHHHhC
Q 002559 177 EETHQVILIVGLSGIGKSCLARQVASD 203 (908)
Q Consensus 177 ~~~~~vV~I~GmgGiGKTtLA~~v~~~ 203 (908)
+.+.+.|.|.|++-+|||||.+.+-..
T Consensus 165 dp~~pTivVaG~PNVGKSSlv~~lT~A 191 (346)
T COG1084 165 DPDLPTIVVAGYPNVGKSSLVRKLTTA 191 (346)
T ss_pred CCCCCeEEEecCCCCcHHHHHHHHhcC
Confidence 346789999999999999999999764
No 453
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=92.01 E-value=1.4 Score=54.95 Aligned_cols=26 Identities=27% Similarity=0.310 Sum_probs=22.5
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
-..|+|+|..|+|||||++.+..-..
T Consensus 491 G~~iaIvG~sGsGKSTLlklL~gl~~ 516 (694)
T TIGR03375 491 GEKVAIIGRIGSGKSTLLKLLLGLYQ 516 (694)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 46899999999999999999986543
No 454
>PRK04182 cytidylate kinase; Provisional
Probab=91.98 E-value=0.13 Score=52.01 Aligned_cols=24 Identities=38% Similarity=0.520 Sum_probs=22.0
Q ss_pred EEEEEecCCCChHHHHHHHHhCCC
Q 002559 182 VILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 182 vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
+|+|.|+.|+||||+|+.+++...
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg 25 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 689999999999999999998764
No 455
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=91.97 E-value=0.63 Score=52.83 Aligned_cols=25 Identities=32% Similarity=0.465 Sum_probs=22.2
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDP 204 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~ 204 (908)
-.+++|+|+.|+|||||.+.++--.
T Consensus 32 Ge~~~llGpsGsGKSTLLr~IaGl~ 56 (351)
T PRK11432 32 GTMVTLLGPSGCGKTTVLRLVAGLE 56 (351)
T ss_pred CCEEEEECCCCCcHHHHHHHHHCCC
Confidence 4689999999999999999998654
No 456
>PRK13975 thymidylate kinase; Provisional
Probab=91.96 E-value=0.12 Score=53.31 Aligned_cols=26 Identities=27% Similarity=0.457 Sum_probs=23.5
Q ss_pred eEEEEEecCCCChHHHHHHHHhCCCC
Q 002559 181 QVILIVGLSGIGKSCLARQVASDPPE 206 (908)
Q Consensus 181 ~vV~I~GmgGiGKTtLA~~v~~~~~~ 206 (908)
..|+|.|+.|+||||+|+.+++....
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~ 28 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNA 28 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 57999999999999999999988763
No 457
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.93 E-value=1 Score=46.73 Aligned_cols=26 Identities=27% Similarity=0.497 Sum_probs=23.1
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
-.+++|+|..|+|||||++.++-..+
T Consensus 33 Ge~~~i~G~nGsGKSTLl~~l~G~~~ 58 (202)
T cd03233 33 GEMVLVLGRPGSGCSTLLKALANRTE 58 (202)
T ss_pred CcEEEEECCCCCCHHHHHHHhcccCC
Confidence 46999999999999999999987654
No 458
>PRK14530 adenylate kinase; Provisional
Probab=91.91 E-value=0.11 Score=54.70 Aligned_cols=25 Identities=28% Similarity=0.446 Sum_probs=21.9
Q ss_pred eEEEEEecCCCChHHHHHHHHhCCC
Q 002559 181 QVILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 181 ~vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
+.|.|+|++|+||||+|+.++....
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~~ 28 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEFG 28 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3588999999999999999987753
No 459
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=91.89 E-value=0.13 Score=53.39 Aligned_cols=25 Identities=24% Similarity=0.538 Sum_probs=22.8
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDP 204 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~ 204 (908)
..+|.|.|.+|+||||+|+.++++.
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999999875
No 460
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=91.85 E-value=0.23 Score=56.35 Aligned_cols=108 Identities=16% Similarity=0.171 Sum_probs=59.3
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCCCCcccc--ceEEEeeeeeeccccccCCcchHHHHHHHHHHHHHHHhccccccCCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDPPERFVG--GAVELGFGQWCSRAACNGSKSDYQKRLARKISKFLVQIGFWKKIKDE 257 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~~~~F~~--~~f~~~v~~wv~~~~~~~s~~~~~~~l~~~i~~~L~~lg~~~~~~~~ 257 (908)
-..|.|+|+.|+||||++..+.+......+. .++. +.. ..+.....+.... ....| ...
T Consensus 134 ~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt--~Ed---------piE~~~~~~~~~~-~~v~Q-------~~v 194 (358)
T TIGR02524 134 EGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILT--YEA---------PIEFVYDEIETIS-ASVCQ-------SEI 194 (358)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEE--eCC---------CceEecccccccc-ceeee-------eec
Confidence 4799999999999999999988765332221 1221 110 0011011110000 00000 000
Q ss_pred CCCHHHHHHHHHHHhccCCeeEEEecCCchhHHHHHhhhcCCCcEEEEEc
Q 002559 258 NSDLEYLCCLLQEALYGKSILILLDDVWEQDIVERFAKLYDNDCKYLVTT 307 (908)
Q Consensus 258 ~~~~~~l~~~l~~~L~~kr~LLVLDDV~~~~~~e~l~~~~~~gsrILVTT 307 (908)
..+.......++..|+..+-.+++..+.+.+..+........|-. ++||
T Consensus 195 ~~~~~~~~~~l~~aLR~~Pd~i~vGEiRd~et~~~al~aa~tGh~-v~tT 243 (358)
T TIGR02524 195 PRHLNNFAAGVRNALRRKPHAILVGEARDAETISAALEAALTGHP-VYTT 243 (358)
T ss_pred cccccCHHHHHHHHhccCCCEEeeeeeCCHHHHHHHHHHHHcCCc-EEEe
Confidence 111223455677788888999999999999988755554445544 4555
No 461
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=91.85 E-value=0.21 Score=54.98 Aligned_cols=26 Identities=31% Similarity=0.317 Sum_probs=22.2
Q ss_pred CceEEEEEecCCCChHHHHHHHHhCC
Q 002559 179 THQVILIVGLSGIGKSCLARQVASDP 204 (908)
Q Consensus 179 ~~~vV~I~GmgGiGKTtLA~~v~~~~ 204 (908)
.+.+|||.|..|+||||+|+.+..-.
T Consensus 61 ~p~IIGIaG~~GSGKSTlar~L~~ll 86 (290)
T TIGR00554 61 IPYIISIAGSVAVGKSTTARILQALL 86 (290)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999998775544
No 462
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=91.84 E-value=2.2 Score=50.97 Aligned_cols=26 Identities=27% Similarity=0.496 Sum_probs=22.9
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
-.+++|+|..|+|||||.+.++--..
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (506)
T PRK13549 31 GEIVSLCGENGAGKSTLMKVLSGVYP 56 (506)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCC
Confidence 46899999999999999999987554
No 463
>PRK14527 adenylate kinase; Provisional
Probab=91.79 E-value=0.14 Score=52.81 Aligned_cols=27 Identities=26% Similarity=0.507 Sum_probs=23.7
Q ss_pred CceEEEEEecCCCChHHHHHHHHhCCC
Q 002559 179 THQVILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 179 ~~~vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
...+|.|+|++|+||||+|+.+++...
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~~ 31 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQELG 31 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 357899999999999999999987664
No 464
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=91.77 E-value=0.36 Score=49.71 Aligned_cols=26 Identities=27% Similarity=0.617 Sum_probs=22.1
Q ss_pred eEEEEEecCCCChHHHHHHHHhCCCC
Q 002559 181 QVILIVGLSGIGKSCLARQVASDPPE 206 (908)
Q Consensus 181 ~vV~I~GmgGiGKTtLA~~v~~~~~~ 206 (908)
+.|.+.|.+|+||||+|++++.-++.
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~ 27 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQ 27 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHH
Confidence 46788999999999999999876553
No 465
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=91.75 E-value=0.27 Score=55.97 Aligned_cols=26 Identities=23% Similarity=0.409 Sum_probs=22.8
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
..+++++|+.|+||||++..++....
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~ 162 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCV 162 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46999999999999999999987653
No 466
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=91.70 E-value=0.59 Score=51.06 Aligned_cols=48 Identities=23% Similarity=0.216 Sum_probs=32.1
Q ss_pred HHHHHHhcc-CCceEEEEEecCCCChHHHHHHHHhCCCCccccceEEEee
Q 002559 169 FLRKLLEQE-ETHQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGF 217 (908)
Q Consensus 169 ~l~~LL~~~-~~~~vV~I~GmgGiGKTtLA~~v~~~~~~~F~~~~f~~~v 217 (908)
.+..+|... +.-+++=|+|+.|+||||+|.+++-.....- ..++|+|.
T Consensus 48 ~LD~~LGGGl~~g~ItEiyG~~gsGKT~lal~~~~~aq~~g-~~a~fIDt 96 (279)
T COG0468 48 ALDEALGGGLPRGRITEIYGPESSGKTTLALQLVANAQKPG-GKAAFIDT 96 (279)
T ss_pred hHHHHhcCCcccceEEEEecCCCcchhhHHHHHHHHhhcCC-CeEEEEeC
Confidence 345555532 2367889999999999999999875443222 14666654
No 467
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.65 E-value=2.2 Score=45.30 Aligned_cols=26 Identities=31% Similarity=0.399 Sum_probs=22.6
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
-.+++|+|..|+|||||.+.++-..+
T Consensus 25 Ge~~~i~G~nG~GKStLl~~l~G~~~ 50 (235)
T cd03299 25 GDYFVILGPTGSGKSVLLETIAGFIK 50 (235)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCcC
Confidence 46899999999999999999986543
No 468
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=91.65 E-value=0.64 Score=51.79 Aligned_cols=109 Identities=13% Similarity=0.150 Sum_probs=59.5
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCCCCccccceEEE-eeeeeeccccccCCcchHHHHHHHHHHHHHHHhccccccCCCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDPPERFVGGAVEL-GFGQWCSRAACNGSKSDYQKRLARKISKFLVQIGFWKKIKDEN 258 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~~~~F~~~~f~~-~v~~wv~~~~~~~s~~~~~~~l~~~i~~~L~~lg~~~~~~~~~ 258 (908)
...+.|+|..|+|||||++.+........ +++.+ +.... .... ... ...........
T Consensus 144 ~~~ili~G~tGsGKTTll~al~~~~~~~~--~iv~ied~~El--------~~~~------~~~------~~l~~~~~~~~ 201 (308)
T TIGR02788 144 RKNIIISGGTGSGKTTFLKSLVDEIPKDE--RIITIEDTREI--------FLPH------PNY------VHLFYSKGGQG 201 (308)
T ss_pred CCEEEEECCCCCCHHHHHHHHHccCCccc--cEEEEcCcccc--------CCCC------CCE------EEEEecCCCCC
Confidence 46899999999999999999987665322 22211 11000 0000 000 00000000000
Q ss_pred CCHHHHHHHHHHHhccCCeeEEEecCCchhHHHHHhhhcCCCcE-EEEEccchh
Q 002559 259 SDLEYLCCLLQEALYGKSILILLDDVWEQDIVERFAKLYDNDCK-YLVTTRNEA 311 (908)
Q Consensus 259 ~~~~~l~~~l~~~L~~kr~LLVLDDV~~~~~~e~l~~~~~~gsr-ILVTTR~~~ 311 (908)
...-...+.+...|+...=.+|+|.+.+.+.++.+.. ...|.. ++.|+...+
T Consensus 202 ~~~~~~~~~l~~~Lr~~pd~ii~gE~r~~e~~~~l~a-~~~g~~~~i~T~Ha~~ 254 (308)
T TIGR02788 202 LAKVTPKDLLQSCLRMRPDRIILGELRGDEAFDFIRA-VNTGHPGSITTLHAGS 254 (308)
T ss_pred cCccCHHHHHHHHhcCCCCeEEEeccCCHHHHHHHHH-HhcCCCeEEEEEeCCC
Confidence 1111234456667778888899999999887775554 335544 466766554
No 469
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=91.64 E-value=0.26 Score=59.48 Aligned_cols=49 Identities=22% Similarity=0.320 Sum_probs=34.6
Q ss_pred cCCCcCccHHHHHHHHHhccC-CceEEEEEecCCCChHHHHHHHHhCCCC
Q 002559 158 EQGYPISSKSKFLRKLLEQEE-THQVILIVGLSGIGKSCLARQVASDPPE 206 (908)
Q Consensus 158 ~~~~g~e~~~~~l~~LL~~~~-~~~vV~I~GmgGiGKTtLA~~v~~~~~~ 206 (908)
|..+-+.+-.++|.++..... ...+|.|+|++|+||||+|+.++..+..
T Consensus 369 P~~f~rpeV~~iL~~~~~~r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~ 418 (568)
T PRK05537 369 PEWFSFPEVVAELRRTYPPRHKQGFTVFFTGLSGAGKSTIAKALMVKLME 418 (568)
T ss_pred ChhhcHHHHHHHHHHHhccccCCCeEEEEECCCCChHHHHHHHHHHHhhh
Confidence 444444455556665554432 3568999999999999999999987753
No 470
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=91.64 E-value=0.76 Score=49.74 Aligned_cols=51 Identities=25% Similarity=0.397 Sum_probs=35.2
Q ss_pred cCCCcCccHHHHHHHHH----------hcc-CCceEEEEEecCCCChHHHHHHHHhCCCCcc
Q 002559 158 EQGYPISSKSKFLRKLL----------EQE-ETHQVILIVGLSGIGKSCLARQVASDPPERF 208 (908)
Q Consensus 158 ~~~~g~e~~~~~l~~LL----------~~~-~~~~vV~I~GmgGiGKTtLA~~v~~~~~~~F 208 (908)
...-|.++-.+-+++-. ... ..-+-|.++|++|.||+.||++|+......|
T Consensus 133 sDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTF 194 (439)
T KOG0739|consen 133 SDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANSTF 194 (439)
T ss_pred hhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCce
Confidence 33447776666665532 111 2267889999999999999999998765544
No 471
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=91.55 E-value=0.51 Score=54.30 Aligned_cols=25 Identities=28% Similarity=0.495 Sum_probs=21.9
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDP 204 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~ 204 (908)
..+++++|++|+||||++..++...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998643
No 472
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=91.55 E-value=2.5 Score=46.56 Aligned_cols=25 Identities=36% Similarity=0.486 Sum_probs=22.1
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDP 204 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~ 204 (908)
-.+++|+|..|+|||||.+.++--.
T Consensus 65 Ge~~~I~G~nGsGKSTLl~~l~Gl~ 89 (285)
T PRK14254 65 NQVTAMIGPSGCGKSTFLRCINRMN 89 (285)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccC
Confidence 4689999999999999999998543
No 473
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=91.54 E-value=3.2 Score=45.65 Aligned_cols=26 Identities=23% Similarity=0.404 Sum_probs=23.0
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
-.+++|+|..|+|||||++.++-...
T Consensus 63 Ge~~~liG~NGsGKSTLl~~I~Gl~~ 88 (282)
T cd03291 63 GEMLAITGSTGSGKTSLLMLILGELE 88 (282)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 46899999999999999999987654
No 474
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=91.54 E-value=0.7 Score=52.98 Aligned_cols=25 Identities=36% Similarity=0.514 Sum_probs=22.0
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDP 204 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~ 204 (908)
-.+++|.|..|+|||||.+.++--.
T Consensus 45 Ge~~~llGpsGsGKSTLLr~IaGl~ 69 (377)
T PRK11607 45 GEIFALLGASGCGKSTLLRMLAGFE 69 (377)
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 4689999999999999999998543
No 475
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=91.53 E-value=0.44 Score=54.32 Aligned_cols=26 Identities=27% Similarity=0.396 Sum_probs=22.9
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
+++|+++|++|+||||++..++....
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~ 266 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFH 266 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHH
Confidence 57999999999999999999986554
No 476
>PRK14737 gmk guanylate kinase; Provisional
Probab=91.52 E-value=0.19 Score=51.72 Aligned_cols=26 Identities=19% Similarity=0.426 Sum_probs=23.3
Q ss_pred CceEEEEEecCCCChHHHHHHHHhCC
Q 002559 179 THQVILIVGLSGIGKSCLARQVASDP 204 (908)
Q Consensus 179 ~~~vV~I~GmgGiGKTtLA~~v~~~~ 204 (908)
..++|.|+|++|+|||||++.+....
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 35789999999999999999998764
No 477
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=91.50 E-value=2.5 Score=50.56 Aligned_cols=25 Identities=24% Similarity=0.395 Sum_probs=22.3
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDP 204 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~ 204 (908)
-.+++|+|..|+|||||.+.++.-.
T Consensus 31 Ge~~~liG~nGsGKSTLl~~i~Gl~ 55 (510)
T PRK09700 31 GEIHALLGENGAGKSTLMKVLSGIH 55 (510)
T ss_pred CcEEEEECCCCCCHHHHHHHHcCCc
Confidence 4699999999999999999998654
No 478
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=91.45 E-value=0.15 Score=51.11 Aligned_cols=24 Identities=33% Similarity=0.516 Sum_probs=21.7
Q ss_pred EEEEEecCCCChHHHHHHHHhCCC
Q 002559 182 VILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 182 vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
+|+|.|+.|+||||+|+.+.+...
T Consensus 2 iI~i~G~~GSGKstia~~la~~lg 25 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKLS 25 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 689999999999999999988653
No 479
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=91.44 E-value=0.92 Score=45.38 Aligned_cols=44 Identities=27% Similarity=0.359 Sum_probs=28.7
Q ss_pred HHHHhc-cCCeeEEEecCCch--------hHHHHHhhhcCCCcEEEEEccchh
Q 002559 268 LQEALY-GKSILILLDDVWEQ--------DIVERFAKLYDNDCKYLVTTRNEA 311 (908)
Q Consensus 268 l~~~L~-~kr~LLVLDDV~~~--------~~~e~l~~~~~~gsrILVTTR~~~ 311 (908)
.++.+. +.-=|||||++... +++-.+...-+.+..||+|.|+..
T Consensus 87 a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 87 AKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 334443 34579999998543 333344444577889999999963
No 480
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=91.41 E-value=0.25 Score=47.80 Aligned_cols=27 Identities=26% Similarity=0.331 Sum_probs=23.8
Q ss_pred CceEEEEEecCCCChHHHHHHHHhCCC
Q 002559 179 THQVILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 179 ~~~vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
...+|.+.|.-|+||||+++.+++...
T Consensus 21 ~~~~i~l~G~lGaGKTtl~~~l~~~lg 47 (133)
T TIGR00150 21 FGTVVLLKGDLGAGKTTLVQGLLQGLG 47 (133)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 356899999999999999999998754
No 481
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=91.41 E-value=0.13 Score=52.49 Aligned_cols=30 Identities=40% Similarity=0.695 Sum_probs=26.7
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCCCCccc
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDPPERFV 209 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~~~~F~ 209 (908)
.++|.|+|+.|+|||||+..+......+|.
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~ 31 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKFG 31 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTTEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcccccc
Confidence 468999999999999999999998877774
No 482
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=91.39 E-value=1.1 Score=46.42 Aligned_cols=21 Identities=24% Similarity=0.453 Sum_probs=19.9
Q ss_pred eEEEEEecCCCChHHHHHHHH
Q 002559 181 QVILIVGLSGIGKSCLARQVA 201 (908)
Q Consensus 181 ~vV~I~GmgGiGKTtLA~~v~ 201 (908)
++++|+|+.|.|||||.+.+.
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 789999999999999999987
No 483
>PRK14526 adenylate kinase; Provisional
Probab=91.37 E-value=0.91 Score=47.66 Aligned_cols=23 Identities=22% Similarity=0.521 Sum_probs=20.1
Q ss_pred EEEEecCCCChHHHHHHHHhCCC
Q 002559 183 ILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 183 V~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
|.|+|++|+||||+|+.++....
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~~ 25 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNELN 25 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 67999999999999999986643
No 484
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=91.35 E-value=0.33 Score=57.81 Aligned_cols=30 Identities=37% Similarity=0.592 Sum_probs=25.8
Q ss_pred CceEEEEEecCCCChHHHHHHHHhCCCCcc
Q 002559 179 THQVILIVGLSGIGKSCLARQVASDPPERF 208 (908)
Q Consensus 179 ~~~vV~I~GmgGiGKTtLA~~v~~~~~~~F 208 (908)
..+.+.++|++|.|||.||+++++.....|
T Consensus 275 ~~~giLl~GpPGtGKT~lAkava~~~~~~f 304 (494)
T COG0464 275 PPKGVLLYGPPGTGKTLLAKAVALESRSRF 304 (494)
T ss_pred CCCeeEEECCCCCCHHHHHHHHHhhCCCeE
Confidence 367899999999999999999999665554
No 485
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=91.32 E-value=0.18 Score=49.36 Aligned_cols=25 Identities=28% Similarity=0.482 Sum_probs=22.5
Q ss_pred eEEEEEecCCCChHHHHHHHHhCCC
Q 002559 181 QVILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 181 ~vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
++|.|+|..|+|||||++.+.+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~ 25 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELK 25 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4799999999999999999998776
No 486
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=91.31 E-value=0.47 Score=53.90 Aligned_cols=25 Identities=40% Similarity=0.614 Sum_probs=20.5
Q ss_pred ceEEEEEecCCCChHH-HHHHHHhCC
Q 002559 180 HQVILIVGLSGIGKSC-LARQVASDP 204 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTt-LA~~v~~~~ 204 (908)
.++|+++|+.|+|||| ||+..+.-.
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~ 228 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYV 228 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHH
Confidence 6899999999999995 777666543
No 487
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=91.30 E-value=0.47 Score=55.28 Aligned_cols=48 Identities=23% Similarity=0.322 Sum_probs=33.9
Q ss_pred cCCCcCccHHHHHHHHHhccCCceEEEEEecCCCChHHHHHHHHhCCC
Q 002559 158 EQGYPISSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 158 ~~~~g~e~~~~~l~~LL~~~~~~~vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
...||.++.--+...+.-.-+--..|+++|+.|+|||||-+.++-++.
T Consensus 394 nv~F~y~~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~ 441 (614)
T KOG0927|consen 394 NVSFGYSDNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQ 441 (614)
T ss_pred ccccCCCCcchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccc
Confidence 344566655545555544433346789999999999999999987753
No 488
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=91.28 E-value=2.1 Score=48.70 Aligned_cols=26 Identities=38% Similarity=0.456 Sum_probs=22.7
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
-.+++|+|..|+|||||.+.++--.+
T Consensus 23 Gei~~l~G~nGsGKSTLl~~iaGl~~ 48 (354)
T TIGR02142 23 QGVTAIFGRSGSGKTTLIRLIAGLTR 48 (354)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 36899999999999999999987543
No 489
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=91.27 E-value=0.72 Score=50.18 Aligned_cols=25 Identities=28% Similarity=0.432 Sum_probs=22.7
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDP 204 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~ 204 (908)
+-+++.+|.+|+||.-.|+.+++..
T Consensus 110 PLvLSfHG~tGTGKN~Va~iiA~n~ 134 (344)
T KOG2170|consen 110 PLVLSFHGWTGTGKNYVAEIIAENL 134 (344)
T ss_pred CeEEEecCCCCCchhHHHHHHHHHH
Confidence 7799999999999999999998765
No 490
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=91.24 E-value=0.56 Score=53.08 Aligned_cols=102 Identities=26% Similarity=0.288 Sum_probs=59.4
Q ss_pred cCccHHHHHHHHHhccC-CceEEEEEecCCCChHHHHHHHHhCCCCccccceEEEeeeeeeccccccCCcchHHHHHHHH
Q 002559 162 PISSKSKFLRKLLEQEE-THQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACNGSKSDYQKRLARK 240 (908)
Q Consensus 162 g~e~~~~~l~~LL~~~~-~~~vV~I~GmgGiGKTtLA~~v~~~~~~~F~~~~f~~~v~~wv~~~~~~~s~~~~~~~l~~~ 240 (908)
++..-..+++..|...- .-.+|.|-|-+|+|||||..+++.+...+- .++|+ +-++...++
T Consensus 74 Ri~tg~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~--~vLYV-------------sGEES~~Qi--- 135 (456)
T COG1066 74 RISTGIEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRG--KVLYV-------------SGEESLQQI--- 135 (456)
T ss_pred cccCChHHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHHhcC--cEEEE-------------eCCcCHHHH---
Confidence 34445556666665531 247899999999999999999999887554 45553 223333332
Q ss_pred HHHHHHHhccccc-cC-CCCCCHHHHHHHHHHHhccCCeeEEEecCC
Q 002559 241 ISKFLVQIGFWKK-IK-DENSDLEYLCCLLQEALYGKSILILLDDVW 285 (908)
Q Consensus 241 i~~~L~~lg~~~~-~~-~~~~~~~~l~~~l~~~L~~kr~LLVLDDV~ 285 (908)
.-....+|.... .. ....++++..+.+.+ .+.-++|+|-+.
T Consensus 136 -klRA~RL~~~~~~l~l~aEt~~e~I~~~l~~---~~p~lvVIDSIQ 178 (456)
T COG1066 136 -KLRADRLGLPTNNLYLLAETNLEDIIAELEQ---EKPDLVVIDSIQ 178 (456)
T ss_pred -HHHHHHhCCCccceEEehhcCHHHHHHHHHh---cCCCEEEEeccc
Confidence 222233342110 00 011255544444433 678999999985
No 491
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=91.22 E-value=0.15 Score=51.04 Aligned_cols=20 Identities=30% Similarity=0.657 Sum_probs=18.9
Q ss_pred EEEEEecCCCChHHHHHHHH
Q 002559 182 VILIVGLSGIGKSCLARQVA 201 (908)
Q Consensus 182 vV~I~GmgGiGKTtLA~~v~ 201 (908)
.|+|.|.+|+||||++..+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999997
No 492
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=91.19 E-value=0.82 Score=52.13 Aligned_cols=25 Identities=32% Similarity=0.527 Sum_probs=22.0
Q ss_pred ceEEEEEecCCCChHHHHHHHHhCC
Q 002559 180 HQVILIVGLSGIGKSCLARQVASDP 204 (908)
Q Consensus 180 ~~vV~I~GmgGiGKTtLA~~v~~~~ 204 (908)
-.+++|+|+.|.|||||.+.++--.
T Consensus 31 Ge~~~llGpsGsGKSTLLr~iaGl~ 55 (362)
T TIGR03258 31 GELLALIGKSGCGKTTLLRAIAGFV 55 (362)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3589999999999999999998643
No 493
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=91.17 E-value=1.3 Score=45.89 Aligned_cols=21 Identities=33% Similarity=0.479 Sum_probs=20.0
Q ss_pred eEEEEEecCCCChHHHHHHHH
Q 002559 181 QVILIVGLSGIGKSCLARQVA 201 (908)
Q Consensus 181 ~vV~I~GmgGiGKTtLA~~v~ 201 (908)
.+++|+|..|.||||+.+.++
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~ 50 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIG 50 (202)
T ss_pred eEEEEECCCCCccHHHHHHHH
Confidence 699999999999999999998
No 494
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=91.12 E-value=1.7 Score=52.22 Aligned_cols=90 Identities=24% Similarity=0.341 Sum_probs=54.8
Q ss_pred cCccHHHHHHHHHhcc---------CC---ceEEEEEecCCCChHHHHHHHHhCCCCccccceEEEeeeeeeccccccCC
Q 002559 162 PISSKSKFLRKLLEQE---------ET---HQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACNGS 229 (908)
Q Consensus 162 g~e~~~~~l~~LL~~~---------~~---~~vV~I~GmgGiGKTtLA~~v~~~~~~~F~~~~f~~~v~~wv~~~~~~~s 229 (908)
|+.+..+.+++.+.-. .+ ..=|.++|++|.|||-||-+++....-+| +++ -
T Consensus 671 g~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~f------isv-----------K 733 (952)
T KOG0735|consen 671 GLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRF------ISV-----------K 733 (952)
T ss_pred cHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeE------EEe-----------c
Confidence 5555666666665432 11 34588999999999999999997654333 222 2
Q ss_pred cchHHHHHHHHHHHHHHHhccccccCCCCCCHHHHHHHHHHHhccCCeeEEEecCCch
Q 002559 230 KSDYQKRLARKISKFLVQIGFWKKIKDENSDLEYLCCLLQEALYGKSILILLDDVWEQ 287 (908)
Q Consensus 230 ~~~~~~~l~~~i~~~L~~lg~~~~~~~~~~~~~~l~~~l~~~L~~kr~LLVLDDV~~~ 287 (908)
.++ ++.+.+ | .+.+...+.+.+.-.-|+|.|.+|..++.
T Consensus 734 GPE----lL~KyI------G---------aSEq~vR~lF~rA~~a~PCiLFFDEfdSi 772 (952)
T KOG0735|consen 734 GPE----LLSKYI------G---------ASEQNVRDLFERAQSAKPCILFFDEFDSI 772 (952)
T ss_pred CHH----HHHHHh------c---------ccHHHHHHHHHHhhccCCeEEEecccccc
Confidence 222 222221 1 13334444555555569999999998754
No 495
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=91.09 E-value=0.15 Score=51.35 Aligned_cols=25 Identities=28% Similarity=0.454 Sum_probs=21.9
Q ss_pred eEEEEEecCCCChHHHHHHHHhCCC
Q 002559 181 QVILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 181 ~vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
+.|.|+|++|+||||+|+.+++.+.
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg 27 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALG 27 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 3578899999999999999998764
No 496
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=91.06 E-value=0.23 Score=58.92 Aligned_cols=47 Identities=26% Similarity=0.341 Sum_probs=36.0
Q ss_pred CCCcCccHHHHHHHHHh----c-cCCceEEEEEecCCCChHHHHHHHHhCCC
Q 002559 159 QGYPISSKSKFLRKLLE----Q-EETHQVILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 159 ~~~g~e~~~~~l~~LL~----~-~~~~~vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
..||+++..+.+...+. . ...-+++.++|++|+||||||+.+++-..
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le 128 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLME 128 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHH
Confidence 46798877776666552 1 23467999999999999999999998554
No 497
>PRK08760 replicative DNA helicase; Provisional
Probab=91.04 E-value=0.87 Score=53.87 Aligned_cols=37 Identities=14% Similarity=0.248 Sum_probs=27.4
Q ss_pred HHHHHHhccCCceEEEEEecCCCChHHHHHHHHhCCC
Q 002559 169 FLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPP 205 (908)
Q Consensus 169 ~l~~LL~~~~~~~vV~I~GmgGiGKTtLA~~v~~~~~ 205 (908)
.+..++..-..-.++.|-|.+|+|||++|..++....
T Consensus 218 ~LD~~t~G~~~G~LivIaarPg~GKTafal~iA~~~a 254 (476)
T PRK08760 218 DFDAMTAGLQPTDLIILAARPAMGKTTFALNIAEYAA 254 (476)
T ss_pred HHHHHhcCCCCCceEEEEeCCCCChhHHHHHHHHHHH
Confidence 3444444333457899999999999999999987653
No 498
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=91.01 E-value=1.1 Score=50.44 Aligned_cols=50 Identities=26% Similarity=0.177 Sum_probs=33.7
Q ss_pred HHHHHHhcc-CCceEEEEEecCCCChHHHHHHHHhCCC--C---ccccceEEEeee
Q 002559 169 FLRKLLEQE-ETHQVILIVGLSGIGKSCLARQVASDPP--E---RFVGGAVELGFG 218 (908)
Q Consensus 169 ~l~~LL~~~-~~~~vV~I~GmgGiGKTtLA~~v~~~~~--~---~F~~~~f~~~v~ 218 (908)
.+..+|..+ ..-.++-|+|.+|+|||+||..++-... . .-...++|+|..
T Consensus 111 ~LD~lL~GG~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE 166 (342)
T PLN03186 111 ELDKILEGGIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTE 166 (342)
T ss_pred HHHHhhcCCCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECC
Confidence 455666543 2367888999999999999998874322 1 122367887764
No 499
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=91.01 E-value=0.18 Score=51.13 Aligned_cols=28 Identities=21% Similarity=0.311 Sum_probs=24.3
Q ss_pred CceEEEEEecCCCChHHHHHHHHhCCCC
Q 002559 179 THQVILIVGLSGIGKSCLARQVASDPPE 206 (908)
Q Consensus 179 ~~~vV~I~GmgGiGKTtLA~~v~~~~~~ 206 (908)
...+++|+|..|+|||||++.+......
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~ 32 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCA 32 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhh
Confidence 3679999999999999999999977653
No 500
>PLN02318 phosphoribulokinase/uridine kinase
Probab=91.01 E-value=0.26 Score=58.66 Aligned_cols=37 Identities=19% Similarity=0.278 Sum_probs=28.3
Q ss_pred HHHHHHHhccCCceEEEEEecCCCChHHHHHHHHhCC
Q 002559 168 KFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDP 204 (908)
Q Consensus 168 ~~l~~LL~~~~~~~vV~I~GmgGiGKTtLA~~v~~~~ 204 (908)
+.+..+-...+++.+|+|.|.+|+||||||+.+....
T Consensus 53 ra~qlL~~~~~~riIIGIaGpSGSGKTTLAk~LaglL 89 (656)
T PLN02318 53 RACQLLAQKNDGIILVGVAGPSGAGKTVFTEKVLNFM 89 (656)
T ss_pred HHHHHHHhcCCCeEEEEEECCCCCcHHHHHHHHHhhC
Confidence 3333333344568899999999999999999998764
Done!