Query 002559
Match_columns 908
No_of_seqs 315 out of 3037
Neff 7.4
Searched_HMMs 29240
Date Tue Mar 26 21:38:29 2013
Command hhsearch -i /local_scratch/syshi/lefta3m2/002559.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H2_58-62//hhsearch_pdb/002559hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3sfz_A APAF-1, apoptotic pepti 1.0 1 1 369.2 24.2 322 155-505 121-456 (1249)
2 2a5y_B CED-4; apoptosis; HET: 1.0 1 1 367.8 26.6 305 161-503 131-473 (549)
3 1vt4_I APAF-1 related killer D 1.0 1 1 331.1 20.3 286 159-494 129-436 (1221)
4 1z6t_A APAF-1, apoptotic prote 1.0 1 1 313.7 26.1 317 155-501 121-452 (591)
5 2qen_A Walker-type ATPase; unk 1.0 1 1 127.2 24.7 291 155-495 9-349 (350)
6 1w5s_A Origin recognition comp 1.0 1 1 126.1 21.2 294 157-490 21-387 (412)
7 2fna_A Conserved hypothetical 1.0 1 1 121.0 24.1 291 156-495 11-357 (357)
8 2qby_B CDC6 homolog 3, cell di 1.0 1 1 101.8 22.4 280 157-478 19-339 (384)
9 2v1u_A Cell division control p 1.0 1 1 100.9 22.7 280 158-478 19-351 (387)
10 2qby_A CDC6 homolog 1, cell di 1.0 1 1 98.0 20.5 281 157-478 19-348 (386)
No 1
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=1.00 E-value=1 Score=369.21 Aligned_cols=322 Identities=22% Similarity=0.314 Sum_probs=245.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHHC-CCCCEEEEEEECCCCCHHHHHHHHHHCC---CCCCCCCEEEEEEEEEECCCCCCCCC
Q ss_conf 4456777675189999998711-6992699999248997689999998099---88665634998131222045336996
Q 002559 155 VKAEQGYPISSKSKFLRKLLEQ-EETHQVILIVGLSGIGKSCLARQVASDP---PERFVGGAVELGFGQWCSRAACNGSK 230 (908)
Q Consensus 155 ~~~~~~~g~e~~~~~i~~LL~~-~~~~~vI~I~GmgGiGKTTLA~~v~~~~---~~~F~~~~f~~~v~~wv~~~~c~~s~ 230 (908)
..+...+||++..+.+..+|.. +..+++|+|+||||+||||||+++|++. ..+|+++++|+++.. ..
T Consensus 121 ~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~---------~~ 191 (1249)
T 3sfz_A 121 QRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGK---------QD 191 (1249)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCS---------CC
T ss_pred CCCCEECCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHCCHHHHHHHCCCEEEEEEECC---------CC
T ss_conf 998641257999999999986135887779999189888889999986075678862788179999788---------57
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCC--CEEEEEECCCCHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 068999999999999982334455799998999999999985139--706798248861679997300399847999735
Q 002559 231 SDYQKRLARKISKFLVQIGFWKKIKDENSDLEYLCCLLQEALYGK--SILILLDDVWEQDIVERFAKLYDNDCKYLVTTR 308 (908)
Q Consensus 231 ~~~~~~i~~~I~~~L~~~g~~~~~~~~~~~~~~l~~~l~~~L~~K--r~LLVLDDVw~~~~~e~l~~~~~~GskIIVTTR 308 (908)
.......+..+...+...+. .......+.+.+...++..+.++ ||||||||||+..+|+. +++||+||||||
T Consensus 192 ~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~----~~~~~~ilvTtR 265 (1249)
T 3sfz_A 192 KSGLLMKLQNLCMRLDQEES--FSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKA----FDNQCQILLTTR 265 (1249)
T ss_dssp HHHHHHHHHHHHHHHTTTCT--TCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTT----TCSSCEEEEEES
T ss_pred CHHHHHHHHHHHHHHHHHCC--CCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHH----HCCCCEEEEECC
T ss_conf 26799999999998655303--334788777899999999973567878999956799778876----368978999927
Q ss_pred CHHHHHH-CCCC---EE--CCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHH
Q ss_conf 4022210-1230---00--1785559999999863203556762499999999681896146768635531168999999
Q 002559 309 NEAVYEI-TEAE---KV--ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGHHPLTVAVMGKALRKELRSEKWE 382 (908)
Q Consensus 309 ~~~va~~-~~~~---~~--~L~~~ea~eLf~~~~~~~~~~~~~~l~~i~~~Iv~~C~GlPLAI~~ig~~L~~~~~~~eW~ 382 (908)
+..++.. .+.. .+ +|+++++++||...++. ..+.+++.+++|+++|+|+||||+++|++|+.+. ..|.
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~----~~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~ 339 (1249)
T 3sfz_A 266 DKSVTDSVMGPKHVVPVESGLGREKGLEILSLFVNM----KKEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWA 339 (1249)
T ss_dssp STTTTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTS----CSTTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHH
T ss_pred CHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCC----CHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHCCH--HHHH
T ss_conf 789987634884379825888878899999986579----8134838899999984997799999999862480--5799
Q ss_pred HHHHHHCHHHCCCCCCCCCCCHHHHCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCHH
Q ss_conf 99998601001799998765601110112301304465215968899999995620589999978899999997211159
Q 002559 383 KAITDLSTFATCAPGPVSYVNEKEAENTLTIFGSFEFSLEAMPRDSRRLFIALAALSWAEPVPEACLEAIWSILVQKSLF 462 (908)
Q Consensus 383 ~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~I~~~L~lSy~~L~~~~K~cfl~laiFp~~~~i~~~~L~~lW~a~g~~~~~ 462 (908)
.+++.+.......... ........+..+|.+||+.|++++|.||++||+||+++.|+.+.++.+|.+++ ..+
T Consensus 340 ~~l~~l~~~~~~~~~~------~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~--~~~ 411 (1249)
T 3sfz_A 340 YYLRQLQNKQFKRIRK------SSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLET--EEV 411 (1249)
T ss_dssp HHHHHHHSCCCCCSSC------TTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCCH--HHH
T ss_pred HHHHHHHHHHHHHCCC------CCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCEECHHHHHHHHCCCH--HHH
T ss_conf 9999986504430346------55644677999999899867999999999728137997518999998858988--899
Q ss_pred HHHHHHHHHCCCCCCCCCC--CEEEECHHHHHHHHHHCCCCCHHH
Q ss_conf 9999999885885112998--919878999999987221121000
Q 002559 463 SLAVCKLVEGSLLMKDDTD--PLYQVHDMVSLYLDSKTNDSIQML 505 (908)
Q Consensus 463 e~~l~~Lv~rSLi~~~~~~--~~~~mHdLV~d~a~~~~~e~~~~i 505 (908)
+.++++|+++||++...+. .+|+|||+||+|+++++.++....
T Consensus 412 ~~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~~~~~ 456 (1249)
T 3sfz_A 412 EDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQLQDL 456 (1249)
T ss_dssp HHHHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGGHHHH
T ss_pred HHHHHHHHHCCCEEEECCCCCEEEEECHHHHHHHHHHHHHHHHHH
T ss_conf 999999974463389637981189966899999874506789999
No 2
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=1.00 E-value=1 Score=367.84 Aligned_cols=305 Identities=17% Similarity=0.189 Sum_probs=228.7
Q ss_pred CCCCCHHHHHHHHHHCC--CCCEEEEEEECCCCCHHHHHHHHHH----CCCCCCCCCEEEEEEEEEECCCCCCCCCCHHH
Q ss_conf 76751899999987116--9926999992489976899999980----99886656349981312220453369960689
Q 002559 161 YPISSKSKFLRKLLEQE--ETHQVILIVGLSGIGKSCLARQVAS----DPPERFVGGAVELGFGQWCSRAACNGSKSDYQ 234 (908)
Q Consensus 161 ~g~e~~~~~i~~LL~~~--~~~~vI~I~GmgGiGKTTLA~~v~~----~~~~~F~~~~f~~~v~~wv~~~~c~~s~~~~~ 234 (908)
|||++..+.+..+|..+ .+.++|+|+||||+||||||+++|+ ..+.+| ++++|++++.- . .+..
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F-~~~~wv~vs~~--------~-~~~~ 200 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINY-DSIVWLKDSGT--------A-PKST 200 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTB-SEEEEEECCCC--------S-TTHH
T ss_pred CCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCC-CCEEEEEECCC--------C-CCCH
T ss_conf 784179999999872515789628999869999889999999984069874669-95799997898--------7-8799
Q ss_pred HHHHHHHHHHHHHHCC-CCCCCCCCCCHHHHHHHHHHHHCCC-CEEEEEECCCCHHHHHHHHHHCCCCCEEEEECCCHHH
Q ss_conf 9999999999998233-4455799998999999999985139-7067982488616799973003998479997354022
Q 002559 235 KRLARKISKFLVQIGF-WKKIKDENSDLEYLCCLLQEALYGK-SILILLDDVWEQDIVERFAKLYDNDCKYLVTTRNEAV 312 (908)
Q Consensus 235 ~~i~~~I~~~L~~~g~-~~~~~~~~~~~~~l~~~l~~~L~~K-r~LLVLDDVw~~~~~e~l~~~~~~GskIIVTTR~~~v 312 (908)
..++..|+..+..... .........+.+.+...+++.|.++ ||||||||||+.+++ .+.. .+||+||||||+..+
T Consensus 201 ~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~~--~~gs~ilvTTR~~~v 277 (549)
T 2a5y_B 201 FDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RWAQ--ELRLRCLVTTRDVEI 277 (549)
T ss_dssp HHHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHHH--HTTCEEEEEESBGGG
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHH-CCCC--CCCCEEEEECCCHHH
T ss_conf 9999999999853755345555331469999999999976898489999799971441-5432--699889997497799
Q ss_pred HHHCC-C---CEE-CCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 21012-3---000-178555999999986320355676249999999968189614676863553116899999999998
Q 002559 313 YEITE-A---EKV-ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGHHPLTVAVMGKALRKELRSEKWEKAITD 387 (908)
Q Consensus 313 a~~~~-~---~~~-~L~~~ea~eLf~~~~~~~~~~~~~~l~~i~~~Iv~~C~GlPLAI~~ig~~L~~~~~~~eW~~~l~~ 387 (908)
+..++ . ..+ +|+.++||+||.+.++... .++.+++++.+|+++|+|+||||+++|+.|+.+ + |..+ +.
T Consensus 278 ~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~--~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~---w~~~-~~ 350 (549)
T 2a5y_B 278 SNAASQTCEFIEVTSLEIDECYDFLEAYGMPMP--VGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-T---FEKM-AQ 350 (549)
T ss_dssp GGGCCSCEEEEECCCCCHHHHHHHHHHTSCCCC----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-S---HHHH-HH
T ss_pred HHHCCCCCEEEECCCCCHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCC-H---HHHH-HH
T ss_conf 997088973898999898999999998744899--855689999999999599839999999984434-4---8999-87
Q ss_pred HCHHHCCCCCCCCCCCHHHHCCCCCCCCHHHHHHCCCCHHHHHHHH-----------HHHHCCCCCCCCHHHHHHHHHHH
Q ss_conf 6010017999987656011101123013044652159688999999-----------95620589999978899999997
Q 002559 388 LSTFATCAPGPVSYVNEKEAENTLTIFGSFEFSLEAMPRDSRRLFI-----------ALAALSWAEPVPEACLEAIWSIL 456 (908)
Q Consensus 388 L~~~~~~~~~~~~~~~~~~~~~~~~I~~~L~lSy~~L~~~~K~cfl-----------~laiFp~~~~i~~~~L~~lW~a~ 456 (908)
+.+..... ....+..+|.+||++||++.|.||+ |||+||+++.|+ +.+|+++
T Consensus 351 l~~~l~~~-------------~~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~ 413 (549)
T 2a5y_B 351 LNNKLESR-------------GLVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCV 413 (549)
T ss_dssp HHHHHHHH-------------CSSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHH
T ss_pred HHHHHHCC-------------CHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHEEEECCCCEEE----EEEEEEE
T ss_conf 57876136-------------477789897516202267999997526522336743235608997666----5331101
Q ss_pred --HH----------CCHHHHHHHHHHHCCCCCCCC--CCCEEEECHHHHHHHHHHCCCCCH
Q ss_conf --21----------115999999998858851129--989198789999999872211210
Q 002559 457 --VQ----------KSLFSLAVCKLVEGSLLMKDD--TDPLYQVHDMVSLYLDSKTNDSIQ 503 (908)
Q Consensus 457 --g~----------~~~~e~~l~~Lv~rSLi~~~~--~~~~~~mHdLV~d~a~~~~~e~~~ 503 (908)
|+ ++.+ .++++|+++||++... ...+|+|||+||+|+++++.++..
T Consensus 414 ~~G~i~~~~~~~~~~~~~-~~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 414 IPVDICSNEEEQLDDEVA-DRLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp SCC-------CCCTHHHH-HHHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHHH
T ss_pred CCCEECCCCCCCCHHHHH-HHHHHHHHCCCEEEECCCCCEEEEECHHHHHHHHHHHHHHHH
T ss_conf 355002677899999999-999999875883671479804999676999999999889899
No 3
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=1.00 E-value=1 Score=331.10 Aligned_cols=286 Identities=19% Similarity=0.231 Sum_probs=219.7
Q ss_pred CCCCCCCHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHCC--CCCCCCCEEEEEEEEEECCCCCCCCCCHHHHH
Q ss_conf 7776751899999987116992699999248997689999998099--88665634998131222045336996068999
Q 002559 159 QGYPISSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDP--PERFVGGAVELGFGQWCSRAACNGSKSDYQKR 236 (908)
Q Consensus 159 ~~~g~e~~~~~i~~LL~~~~~~~vI~I~GmgGiGKTTLA~~v~~~~--~~~F~~~~f~~~v~~wv~~~~c~~s~~~~~~~ 236 (908)
..+||+...+.+..+|....+.++|+|+||||+||||||+++|++. +.+|+++++|++++ ..+....
T Consensus 129 ~~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs-----------~~~d~~~ 197 (1221)
T 1vt4_I 129 YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLK-----------NCNSPET 197 (1221)
T ss_dssp SCCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECC-----------CSSSHHH
T ss_pred CCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEC-----------CCCCHHH
T ss_conf 77892899999999974358971899976999667999999997149887489938999828-----------9999999
Q ss_pred HHHHHHHHHHHHCCCCCCCCC-----CCCHHHHHHHHHHHH---CCCCEEEEEECCCCHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 999999999982334455799-----998999999999985---139706798248861679997300399847999735
Q 002559 237 LARKISKFLVQIGFWKKIKDE-----NSDLEYLCCLLQEAL---YGKSILILLDDVWEQDIVERFAKLYDNDCKYLVTTR 308 (908)
Q Consensus 237 i~~~I~~~L~~~g~~~~~~~~-----~~~~~~l~~~l~~~L---~~Kr~LLVLDDVw~~~~~e~l~~~~~~GskIIVTTR 308 (908)
++..+...+...+........ ..+.+.+...+++.| .+||+||||||||+.++|+.+ ++||+||||||
T Consensus 198 IL~~Ll~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f----~pGSRILVTTR 273 (1221)
T 1vt4_I 198 VLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF----NLSCKILLTTR 273 (1221)
T ss_dssp HHHHHHHHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHH----HSSCCEEEECS
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHH----CCCEEEEEECC
T ss_conf 99999999862272102200134679999999999999999850478879987186818999864----79829999443
Q ss_pred CHHHHHHCC---CCEE-------CCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCC-C
Q ss_conf 402221012---3000-------1785559999999863203556762499999999681896146768635531168-9
Q 002559 309 NEAVYEITE---AEKV-------ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGHHPLTVAVMGKALRKEL-R 377 (908)
Q Consensus 309 ~~~va~~~~---~~~~-------~L~~~ea~eLf~~~~~~~~~~~~~~l~~i~~~Iv~~C~GlPLAI~~ig~~L~~~~-~ 377 (908)
+..++..+. .+.+ +|+.+|||+||.+.+... .. +...++ |+|+||||+++|+.|+.+. +
T Consensus 274 d~~Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~----~e---eL~~eI---CgGLPLALkLaGs~Lr~k~~s 343 (1221)
T 1vt4_I 274 FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR----PQ---DLPREV---LTTNPRRLSIIAESIRDGLAT 343 (1221)
T ss_dssp CSHHHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHHCCC----TT---THHHHH---CCCCHHHHHHHHHHHHHSCSS
T ss_pred CHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCC----HH---HHHHHH---HCCCHHHHHHHHHHHHCCCCC
T ss_conf 73799866897089946865568969999999999974998----89---999999---698999999999998488997
Q ss_pred HHHHHHHHHHHCHHHCCCCCCCCCCCHHHHCCCCCCCCHHHHHHCCCCHHH-HHHHHHHHHCCCCCCCCHHHHHHHHHHH
Q ss_conf 999999999860100179999876560111011230130446521596889-9999995620589999978899999997
Q 002559 378 SEKWEKAITDLSTFATCAPGPVSYVNEKEAENTLTIFGSFEFSLEAMPRDS-RRLFIALAALSWAEPVPEACLEAIWSIL 456 (908)
Q Consensus 378 ~~eW~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~I~~~L~lSy~~L~~~~-K~cfl~laiFp~~~~i~~~~L~~lW~a~ 456 (908)
..+|... . . ..+..+|.+||+.|+++. |.||++||+||+++.|+.+.++.+|.++
T Consensus 344 ~eeW~~~----~--------------~------~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~ae 399 (1221)
T 1vt4_I 344 WDNWKHV----N--------------C------DKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDV 399 (1221)
T ss_dssp HHHHHHC----S--------------C------HHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSS
T ss_pred HHHHHCC----C--------------H------HHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCC
T ss_conf 9998669----8--------------6------18999999999848899999999997177999987799999876677
Q ss_pred HHCCHHHHHHHHHHHCCCCCCCCCCCEEEECHHHHHHH
Q ss_conf 21115999999998858851129989198789999999
Q 002559 457 VQKSLFSLAVCKLVEGSLLMKDDTDPLYQVHDMVSLYL 494 (908)
Q Consensus 457 g~~~~~e~~l~~Lv~rSLi~~~~~~~~~~mHdLV~d~a 494 (908)
|. +.++.++++|+++|||+..+...+|+|||+++++.
T Consensus 400 Ge-edAe~~L~eLvdRSLLq~d~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 400 IK-SDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELK 436 (1221)
T ss_dssp CS-HHHHHHHHHHHTSSSSSBCSSSSEEBCCCHHHHHH
T ss_pred CH-HHHHHHHHHHHHHCCEEEECCCCEEEEHHHHHHHH
T ss_conf 88-99999999999619889868999898609999985
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=1.00 E-value=1 Score=313.71 Aligned_cols=317 Identities=22% Similarity=0.324 Sum_probs=237.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHHCC-CCCEEEEEEECCCCCHHHHHHHHHHCC---CCCCCCCEEEEEEEEEECCCCCCCCC
Q ss_conf 44567776751899999987116-992699999248997689999998099---88665634998131222045336996
Q 002559 155 VKAEQGYPISSKSKFLRKLLEQE-ETHQVILIVGLSGIGKSCLARQVASDP---PERFVGGAVELGFGQWCSRAACNGSK 230 (908)
Q Consensus 155 ~~~~~~~g~e~~~~~i~~LL~~~-~~~~vI~I~GmgGiGKTTLA~~v~~~~---~~~F~~~~f~~~v~~wv~~~~c~~s~ 230 (908)
..+...+||+...+.+..++... ++.++|+|+||||+||||||.+++++. ..+|+++++|++++.. ..
T Consensus 121 ~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~--------~~ 192 (591)
T 1z6t_A 121 QRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ--------DK 192 (591)
T ss_dssp CCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC--------CH
T ss_pred CCCCEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHCHHHHHHHCCCCEEEEECCCC--------CH
T ss_conf 9987140529999999999860368884699976998988999999983556888528996599977877--------66
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCC-CCCCCCCHHHHHHHHHHHHCC--CCEEEEEECCCCHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 06899999999999998233445-579999899999999998513--970679824886167999730039984799973
Q 002559 231 SDYQKRLARKISKFLVQIGFWKK-IKDENSDLEYLCCLLQEALYG--KSILILLDDVWEQDIVERFAKLYDNDCKYLVTT 307 (908)
Q Consensus 231 ~~~~~~i~~~I~~~L~~~g~~~~-~~~~~~~~~~l~~~l~~~L~~--Kr~LLVLDDVw~~~~~e~l~~~~~~GskIIVTT 307 (908)
..+...+......++.... ......+.+.....+.+.+.+ +++||||||+|+...++ ++++||+||+||
T Consensus 193 ----~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~----~l~~~~~ilvTs 264 (591)
T 1z6t_A 193 ----SGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLK----AFDSQCQILLTT 264 (591)
T ss_dssp ----HHHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHH----TTCSSCEEEEEE
T ss_pred ----HHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHH----HHCCCCEEEEEC
T ss_conf ----889999999999850355655679988999999999997067998699985899879998----763798699989
Q ss_pred CCHHHHHHCCC--CEE----CCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHH
Q ss_conf 54022210123--000----178555999999986320355676249999999968189614676863553116899999
Q 002559 308 RNEAVYEITEA--EKV----ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCGHHPLTVAVMGKALRKELRSEKW 381 (908)
Q Consensus 308 R~~~va~~~~~--~~~----~L~~~ea~eLf~~~~~~~~~~~~~~l~~i~~~Iv~~C~GlPLAI~~ig~~L~~~~~~~eW 381 (908)
|+..++..+.. ..+ +|+.+++++||...++.. .+..++.+.+|+++|+|+||||.++|+.++.+. .+|
T Consensus 265 R~~~~~~~~~~~~~~v~~l~~L~~~ea~~L~~~~~~~~----~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~--~~w 338 (591)
T 1z6t_A 265 RDKSVTDSVMGPKYVVPVESSLGKEKGLEILSLFVNMK----KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP--NRW 338 (591)
T ss_dssp SCGGGGTTCCSCEEEEECCSSCCHHHHHHHHHHHHTSC----GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST--TCH
T ss_pred CCCHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHCCC----CCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCC--HHH
T ss_conf 88177773489826861588999899999999871898----310459999999995898379999999984484--359
Q ss_pred HHHHHHHCHHHCCCCCCCCCCCHHHHCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCH
Q ss_conf 99999860100179999876560111011230130446521596889999999562058999997889999999721115
Q 002559 382 EKAITDLSTFATCAPGPVSYVNEKEAENTLTIFGSFEFSLEAMPRDSRRLFIALAALSWAEPVPEACLEAIWSILVQKSL 461 (908)
Q Consensus 382 ~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~I~~~L~lSy~~L~~~~K~cfl~laiFp~~~~i~~~~L~~lW~a~g~~~~ 461 (908)
..+++.+......... ........++..+|..||+.|+++.|.||++||+||++..|+.+.+..+|.+... .
T Consensus 339 ~~~l~~l~~~~~~~~~------~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~~~--~ 410 (591)
T 1z6t_A 339 EYYLKQLQNKQFKRIR------KSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDMETE--E 410 (591)
T ss_dssp HHHHHHHHSCCCCCSS------CCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCCHH--H
T ss_pred HHHHHHHHHHHHHHHH------HCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCHH--H
T ss_conf 9999999886898765------1146543789999999998689999999997455679985089999999665889--9
Q ss_pred HHHHHHHHHHCCCCCCCC--CCCEEEECHHHHHHHHHHCCCC
Q ss_conf 999999998858851129--9891987899999998722112
Q 002559 462 FSLAVCKLVEGSLLMKDD--TDPLYQVHDMVSLYLDSKTNDS 501 (908)
Q Consensus 462 ~e~~l~~Lv~rSLi~~~~--~~~~~~mHdLV~d~a~~~~~e~ 501 (908)
++.++++|+++||++... ...+|+||+++|+|++....+.
T Consensus 411 ~~~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~~~~ 452 (591)
T 1z6t_A 411 VEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKNCSQ 452 (591)
T ss_dssp HHHHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHHTGGG
T ss_pred HHHHHHHHHHCCCEEEECCCCCCEEEECHHHHHHHHHHHHHH
T ss_conf 999999998595868854898567997689999998653568
No 5
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=1.00 E-value=1 Score=127.18 Aligned_cols=291 Identities=15% Similarity=0.156 Sum_probs=169.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEEEEEEECCCCCCCCCCHHH
Q ss_conf 44567776751899999987116992699999248997689999998099886656349981312220453369960689
Q 002559 155 VKAEQGYPISSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACNGSKSDYQ 234 (908)
Q Consensus 155 ~~~~~~~g~e~~~~~i~~LL~~~~~~~vI~I~GmgGiGKTTLA~~v~~~~~~~F~~~~f~~~v~~wv~~~~c~~s~~~~~ 234 (908)
..+...+||+...+.+..++... +++.|+|++|+|||||++++++... ++|+++...... ......
T Consensus 9 ~~~~~~~gR~~el~~L~~~l~~~---~~v~i~G~~G~GKT~Ll~~~~~~~~------~~~~~~~~~~~~-----~~~~~~ 74 (350)
T 2qen_A 9 TRREDIFDREEESRKLEESLENY---PLTLLLGIRRVGKSSLLRAFLNERP------GILIDCRELYAE-----RGHITR 74 (350)
T ss_dssp CSGGGSCSCHHHHHHHHHHHHHC---SEEEEECCTTSSHHHHHHHHHHHSS------EEEEEHHHHHHT-----TTCBCH
T ss_pred CCHHHCCCHHHHHHHHHHHHHCC---CEEEEECCCCCCHHHHHHHHHHHCC------CEEEEEECCCCC-----CCCCCH
T ss_conf 98675679499999999998529---8389988986788999999998769------699980023244-----568898
Q ss_pred HHHHHHHHHHHHH-------H-------CCCCCCCCCCCCHHHHHHHHHHHHCC-CCEEEEEECCCCHH---------HH
Q ss_conf 9999999999998-------2-------33445579999899999999998513-97067982488616---------79
Q 002559 235 KRLARKISKFLVQ-------I-------GFWKKIKDENSDLEYLCCLLQEALYG-KSILILLDDVWEQD---------IV 290 (908)
Q Consensus 235 ~~i~~~I~~~L~~-------~-------g~~~~~~~~~~~~~~l~~~l~~~L~~-Kr~LLVLDDVw~~~---------~~ 290 (908)
..+...+...+.. . +. .......+.......+.+.... ++.+||+||++... .+
T Consensus 75 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~ 152 (350)
T 2qen_A 75 EELIKELQSTISPFQKFQSKFKISLNLKFL--TLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELL 152 (350)
T ss_dssp HHHHHHHHHHSCSHHHHHHHHTCCCCCGGG--TSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCEEEEEECCE--EECCCCCHHHHHHHHHHHHHHCCCCEEEEEECHHHHHCCCCCCHHHHH
T ss_conf 999999999998887676633058985454--614350409999999999984059879999677887304764245699
Q ss_pred HHHHHHC--CCCCEEEEECCCHHH-HHH----------CC--CCEE---CCCHHHHHHHHHHHHHHCCCCCCCCHHHHHH
Q ss_conf 9973003--998479997354022-210----------12--3000---1785559999999863203556762499999
Q 002559 291 ERFAKLY--DNDCKYLVTTRNEAV-YEI----------TE--AEKV---ELSKDDIMEISKSILLYHSLLAEEELPAAAE 352 (908)
Q Consensus 291 e~l~~~~--~~GskIIVTTR~~~v-a~~----------~~--~~~~---~L~~~ea~eLf~~~~~~~~~~~~~~l~~i~~ 352 (908)
..+.... ..+.++|+|++.... ... .+ ...+ +|+.+++.+++...+...+.. ..++...
T Consensus 153 ~~L~~~~~~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~---~~~~~~~ 229 (350)
T 2qen_A 153 ALFAYAYDSLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLD---VPENEIE 229 (350)
T ss_dssp HHHHHHHHHCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCC---CCHHHHH
T ss_pred HHHHHHHHHCCCEEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCC---CCHHHHH
T ss_conf 9999999826986999978827899998862478874224756535579999799999999999976988---8999999
Q ss_pred HHHHHHCCCHHHHHHHHHHHHCCCCHHHHH-HHHHHHCHHHCCCCCCCCCCCHHHHCCCCCCCCHHHHHHCCC---CHHH
Q ss_conf 999681896146768635531168999999-999986010017999987656011101123013044652159---6889
Q 002559 353 SLLERCGHHPLTVAVMGKALRKELRSEKWE-KAITDLSTFATCAPGPVSYVNEKEAENTLTIFGSFEFSLEAM---PRDS 428 (908)
Q Consensus 353 ~Iv~~C~GlPLAI~~ig~~L~~~~~~~eW~-~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~I~~~L~lSy~~L---~~~~ 428 (908)
.+++.|+|+|+++..++..+....+...+. ...+.... .+.-.+..+ ++..
T Consensus 230 ~i~~~tgG~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~l~~l~~~~~~~ 284 (350)
T 2qen_A 230 EAVELLDGIPGWLVVFGVEYLRNGDFGRAMKRTLEVAKG-------------------------LIMGELEELRRRSPRY 284 (350)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH-------------------------HHHHHHHHHHHHCHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH-------------------------HHHHHHHHHHHCCHHH
T ss_conf 999995998799999999980466376789999998899-------------------------9999999987477459
Q ss_pred HHHHHHHHHCCCCCCCCHHHHHHHHHHH--H-HCCHHHHHHHHHHHCCCCCCCCCCCEEEE-CHHHHHHHH
Q ss_conf 9999995620589999978899999997--2-11159999999988588511299891987-899999998
Q 002559 429 RRLFIALAALSWAEPVPEACLEAIWSIL--V-QKSLFSLAVCKLVEGSLLMKDDTDPLYQV-HDMVSLYLD 495 (908)
Q Consensus 429 K~cfl~laiFp~~~~i~~~~L~~lW~a~--g-~~~~~e~~l~~Lv~rSLi~~~~~~~~~~m-HdLV~d~a~ 495 (908)
+.++..+|. + .++...+....... + .......+++.|.+.+||...+ ..|.+ |++++.|++
T Consensus 285 ~~~l~~la~---g-~~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~~--~~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 285 VDILRAIAL---G-YNRWSLIRDYLAVKGTKIPEPRLYALLENLKKMNWIVEED--NTYKIADPVVATVLR 349 (350)
T ss_dssp HHHHHHHHT---T-CCSHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEEET--TEEEESSHHHHHHHT
T ss_pred HHHHHHHHH---C-CCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCEEECC--CEEEEECHHHHHHHC
T ss_conf 999999982---7-8779999999999738898799999999998678988439--989981679999871
No 6
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=1.00 E-value=1 Score=126.08 Aligned_cols=294 Identities=13% Similarity=0.102 Sum_probs=167.6
Q ss_pred CCCCCCCCCHHHHHHHHH-HC---C--CCCEEEEE--EECCCCCHHHHHHHHHHCCCCC-----CCCCEEEEEEEEEECC
Q ss_conf 567776751899999987-11---6--99269999--9248997689999998099886-----6563499813122204
Q 002559 157 AEQGYPISSKSKFLRKLL-EQ---E--ETHQVILI--VGLSGIGKSCLARQVASDPPER-----FVGGAVELGFGQWCSR 223 (908)
Q Consensus 157 ~~~~~g~e~~~~~i~~LL-~~---~--~~~~vI~I--~GmgGiGKTTLA~~v~~~~~~~-----F~~~~f~~~v~~wv~~ 223 (908)
+...+||++..+.+..++ .. . .....+.| +|++|+||||||+.+++..... +...++|++..
T Consensus 21 p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 95 (412)
T 1w5s_A 21 PPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAF----- 95 (412)
T ss_dssp CSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGG-----
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECC-----
T ss_conf 887887699999999998679853889999879993869299989999999999999987425896269999798-----
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHC--CCCEEEEEECCCCH--------HHHHHH
Q ss_conf 53369960689999999999999823344557999989999999999851--39706798248861--------679997
Q 002559 224 AACNGSKSDYQKRLARKISKFLVQIGFWKKIKDENSDLEYLCCLLQEALY--GKSILILLDDVWEQ--------DIVERF 293 (908)
Q Consensus 224 ~~c~~s~~~~~~~i~~~I~~~L~~~g~~~~~~~~~~~~~~l~~~l~~~L~--~Kr~LLVLDDVw~~--------~~~e~l 293 (908)
.......+...+...+ +. .......+.......+.+.+. +++++|||||++.. +.+..+
T Consensus 96 ------~~~~~~~~~~~l~~~l---~~--~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l 164 (412)
T 1w5s_A 96 ------NAPNLYTILSLIVRQT---GY--PIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTL 164 (412)
T ss_dssp ------GCCSHHHHHHHHHHHH---TC--CCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHH
T ss_pred ------CCCCHHHHHHHHHHHH---CC--CCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEECHHHHHHCCCCCHHHHHHH
T ss_conf ------8999999999999984---78--778888899999999999998569859999817878741357642899999
Q ss_pred HHHC---C-----CCCEEEEECCCHHHHHH-----------CCC-CEE-CCCHHHHHHHHHHHHHHCCCCCCCCHHHHHH
Q ss_conf 3003---9-----98479997354022210-----------123-000-1785559999999863203556762499999
Q 002559 294 AKLY---D-----NDCKYLVTTRNEAVYEI-----------TEA-EKV-ELSKDDIMEISKSILLYHSLLAEEELPAAAE 352 (908)
Q Consensus 294 ~~~~---~-----~GskIIVTTR~~~va~~-----------~~~-~~~-~L~~~ea~eLf~~~~~~~~~~~~~~l~~i~~ 352 (908)
..++ + ....+|+||+...+... ... ..+ +++.++.++++...+..... ...-.++...
T Consensus 165 ~~~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~-~~~~~~~~~~ 243 (412)
T 1w5s_A 165 LRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLR-DTVWEPRHLE 243 (412)
T ss_dssp HTHHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBC-TTSCCHHHHH
T ss_pred HHHHHHCCCCCCCCEEEEEEEECCCCHHHHHHHHCCHHHHHCCCEEEECCCCHHHHHHHHHHHHHHCCC-CCCCCHHHHH
T ss_conf 999873556788733899999664217988732062024312773435898979999999999974478-8888968999
Q ss_pred HHHHHHC------CCHHHHHHHHHH-HH-----C--CCCHHHHHHHHHHHCHHHCCCCCCCCCCCHHHHCCCCCCCCHHH
Q ss_conf 9996818------961467686355-31-----1--68999999999986010017999987656011101123013044
Q 002559 353 SLLERCG------HHPLTVAVMGKA-LR-----K--ELRSEKWEKAITDLSTFATCAPGPVSYVNEKEAENTLTIFGSFE 418 (908)
Q Consensus 353 ~Iv~~C~------GlPLAI~~ig~~-L~-----~--~~~~~eW~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~I~~~L~ 418 (908)
.+++.|+ |.|..+..+... .. + ..+...+..++..... ...+.
T Consensus 244 ~i~~~~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~-----------------------~~~~~ 300 (412)
T 1w5s_A 244 LISDVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA-----------------------ASIQT 300 (412)
T ss_dssp HHHHHHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC-----------------------------C
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHC-----------------------CCHHH
T ss_conf 9999998761679968999999999999999749997789999999999841-----------------------12699
Q ss_pred HHHCCCCHHHHHHHHHHHHCC--CCCCCCHHHHHHHHHH-----HHH----CCHHHHHHHHHHHCCCCCCCC----CCCE
Q ss_conf 652159688999999956205--8999997889999999-----721----115999999998858851129----9891
Q 002559 419 FSLEAMPRDSRRLFIALAALS--WAEPVPEACLEAIWSI-----LVQ----KSLFSLAVCKLVEGSLLMKDD----TDPL 483 (908)
Q Consensus 419 lSy~~L~~~~K~cfl~laiFp--~~~~i~~~~L~~lW~a-----~g~----~~~~e~~l~~Lv~rSLi~~~~----~~~~ 483 (908)
-++..||+..+.++..++.+. .+..+....+...+.. .|. ......+++.|.+.+||.... ..++
T Consensus 301 ~~l~~l~~~~~~~l~aia~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~~~~~~~~g~ 380 (412)
T 1w5s_A 301 HELEALSIHELIILRLIAEATLGGMEWINAGLLRQRYEDASLTMYNVKPRGYTQYHIYLKHLTSLGLVDAKPSGRGMRGR 380 (412)
T ss_dssp CSSSSSCHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHHHSCCCCCCHHHHHHHHHHHHHTTSEEEECC-------
T ss_pred HHHHCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCC
T ss_conf 99972889999999999999845898846999999999998763599999899999999999868987741566788886
Q ss_pred EEECHHH
Q ss_conf 9878999
Q 002559 484 YQVHDMV 490 (908)
Q Consensus 484 ~~mHdLV 490 (908)
|++|.+.
T Consensus 381 ~~~~~l~ 387 (412)
T 1w5s_A 381 TTLFRLA 387 (412)
T ss_dssp CCEEEEC
T ss_pred EEEEEEC
T ss_conf 3699847
No 7
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=1.00 E-value=1 Score=120.95 Aligned_cols=291 Identities=15% Similarity=0.171 Sum_probs=165.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEEEEEEECCCCCCCCCCHHHH
Q ss_conf 45677767518999999871169926999992489976899999980998866563499813122204533699606899
Q 002559 156 KAEQGYPISSKSKFLRKLLEQEETHQVILIVGLSGIGKSCLARQVASDPPERFVGGAVELGFGQWCSRAACNGSKSDYQK 235 (908)
Q Consensus 156 ~~~~~~g~e~~~~~i~~LL~~~~~~~vI~I~GmgGiGKTTLA~~v~~~~~~~F~~~~f~~~v~~wv~~~~c~~s~~~~~~ 235 (908)
.+...+||+...+.+.. +.. +++.|+|++|+|||+|++++++.... ..+|++....- +....+. .
T Consensus 11 ~~~~~~gR~~el~~L~~-l~~----~~v~i~G~~G~GKT~L~~~~~~~~~~----~~~~~~~~~~~--~~~~~~~----~ 75 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LRA----PITLVLGLRRTGKSSIIKIGINELNL----PYIYLDLRKFE--ERNYISY----K 75 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TCS----SEEEEEESTTSSHHHHHHHHHHHHTC----CEEEEEGGGGT--TCSCCCH----H
T ss_pred CHHHHCCHHHHHHHHHH-HCC----CCEEEECCCCCCHHHHHHHHHHHCCC----CEEEEECHHHC--CCCCCCH----H
T ss_conf 97882594999999998-457----85899879877889999999985689----87999762200--3357888----9
Q ss_pred HHHHHHHHHHHH--------------H-CCCC-C----CC---CCCCCHHHHHHHHHHHHCCCCEEEEEECCCCH-----
Q ss_conf 999999999998--------------2-3344-5----57---99998999999999985139706798248861-----
Q 002559 236 RLARKISKFLVQ--------------I-GFWK-K----IK---DENSDLEYLCCLLQEALYGKSILILLDDVWEQ----- 287 (908)
Q Consensus 236 ~i~~~I~~~L~~--------------~-g~~~-~----~~---~~~~~~~~l~~~l~~~L~~Kr~LLVLDDVw~~----- 287 (908)
.+...+...+.. . +... . .. ........+...+.+.-. ++++|||||++..
T Consensus 76 ~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~ 154 (357)
T 2fna_A 76 DFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRG 154 (357)
T ss_dssp HHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCEEEEECCCCCCHHHHHHHHHHHHHCCC-CCEEEEEECHHHHHCCCC
T ss_conf 9999999999987532358999854266477556278741377625339999999986077-886999977787615683
Q ss_pred -HHHHHHHHHC--CCCCEEEEECCCHHHHH-----------HCC--CCEE---CCCHHHHHHHHHHHHHHCCCCCCCCHH
Q ss_conf -6799973003--99847999735402221-----------012--3000---178555999999986320355676249
Q 002559 288 -DIVERFAKLY--DNDCKYLVTTRNEAVYE-----------ITE--AEKV---ELSKDDIMEISKSILLYHSLLAEEELP 348 (908)
Q Consensus 288 -~~~e~l~~~~--~~GskIIVTTR~~~va~-----------~~~--~~~~---~L~~~ea~eLf~~~~~~~~~~~~~~l~ 348 (908)
+.+..+.... ..+.++|+|+|...... ..+ ...+ +|+.+++.+++...+...+... +.
T Consensus 155 ~~~~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~-~~-- 231 (357)
T 2fna_A 155 VNLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDF-KD-- 231 (357)
T ss_dssp CCCHHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCC-CC--
T ss_pred HHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCC-CC--
T ss_conf 659999999997479859999728468999987424778841147344032699997999999999999818888-83--
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHH-HHHHHCHHHCCCCCCCCCCCHHHHCCCCCCCCHHH-HHH--CCC
Q ss_conf 99999996818961467686355311689999999-99986010017999987656011101123013044-652--159
Q 002559 349 AAAESLLERCGHHPLTVAVMGKALRKELRSEKWEK-AITDLSTFATCAPGPVSYVNEKEAENTLTIFGSFE-FSL--EAM 424 (908)
Q Consensus 349 ~i~~~Iv~~C~GlPLAI~~ig~~L~~~~~~~eW~~-~l~~L~~~~~~~~~~~~~~~~~~~~~~~~I~~~L~-lSy--~~L 424 (908)
. ..|++.|+|+|+++..++..+....+...|.. +.+.... .+...+. +.+ ..+
T Consensus 232 -~-~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~l~~~~~~~~~l 288 (357)
T 2fna_A 232 -Y-EVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAKK---------------------LILKEFENFLHGREIA 288 (357)
T ss_dssp -H-HHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH---------------------HHHHHHHHHHTTCGGG
T ss_pred -H-HHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH---------------------HHHHHHHHHHHCCCCC
T ss_conf -7-9999995999899999999973455467899999999999---------------------9999999986402223
Q ss_pred CHHHHHHHHHHHHCCCCCCCCHHHHHHHHH-HHH---HCCHHHHHHHHHHHCCCCCCCCCCCEEE-ECHHHHHHHH
Q ss_conf 688999999956205899999788999999-972---1115999999998858851129989198-7899999998
Q 002559 425 PRDSRRLFIALAALSWAEPVPEACLEAIWS-ILV---QKSLFSLAVCKLVEGSLLMKDDTDPLYQ-VHDMVSLYLD 495 (908)
Q Consensus 425 ~~~~K~cfl~laiFp~~~~i~~~~L~~lW~-a~g---~~~~~e~~l~~Lv~rSLi~~~~~~~~~~-mHdLV~d~a~ 495 (908)
++..+.++..+|+ +. +...+..... ..| .......+++.|.+.+||...+ ..|. .|++++++++
T Consensus 289 ~~~~~~~l~~la~---g~--~~~~l~~~~~~~~g~~~~~~~~~~~L~~L~~~gli~~~~--~~y~f~~~~~~~~l~ 357 (357)
T 2fna_A 289 RKRYLNIMRTLSK---CG--KWSDVKRALELEEGIEISDSEIYNYLTQLTKHSWIIKEG--EKYCPSEPLISLAFS 357 (357)
T ss_dssp HHHHHHHHHHHTT---CB--CHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHTTSEEESS--SCEEESSHHHHHHTC
T ss_pred CHHHHHHHHHHHC---CC--CHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCEEECC--CEEEECCHHHHHHHC
T ss_conf 2779999999984---89--899999999986188778899999999998578888539--989956789999639
No 8
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=1.00 E-value=1 Score=101.78 Aligned_cols=280 Identities=13% Similarity=0.092 Sum_probs=162.5
Q ss_pred CCCCCCCCCHHHHHHHHHHC---CCCCEEEEEEECCCCCHHHHHHHHHHCCCC------CC-CCCEEEEEEEEEECCCCC
Q ss_conf 56777675189999998711---699269999924899768999999809988------66-563499813122204533
Q 002559 157 AEQGYPISSKSKFLRKLLEQ---EETHQVILIVGLSGIGKSCLARQVASDPPE------RF-VGGAVELGFGQWCSRAAC 226 (908)
Q Consensus 157 ~~~~~g~e~~~~~i~~LL~~---~~~~~vI~I~GmgGiGKTTLA~~v~~~~~~------~F-~~~~f~~~v~~wv~~~~c 226 (908)
+...+|+++..+.+..++.. ....+.+.|+|++|+|||++|+.+++.... .+ ....++++..
T Consensus 19 p~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~-------- 90 (384)
T 2qby_B 19 FKEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCR-------- 90 (384)
T ss_dssp CSSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHH--------
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECC--------
T ss_conf 898997099999999999999718999818998989998999999999999987532057888359999791--------
Q ss_pred CCCCCH-HHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCHH------H-HHHHHHHCC
Q ss_conf 699606-89999999999999823344557999989999999999851397067982488616------7-999730039
Q 002559 227 NGSKSD-YQKRLARKISKFLVQIGFWKKIKDENSDLEYLCCLLQEALYGKSILILLDDVWEQD------I-VERFAKLYD 298 (908)
Q Consensus 227 ~~s~~~-~~~~i~~~I~~~L~~~g~~~~~~~~~~~~~~l~~~l~~~L~~Kr~LLVLDDVw~~~------~-~e~l~~~~~ 298 (908)
... ....+...+...+. |. .......+.......+.+.+..++.+|||||++... . +..+....
T Consensus 91 ---~~~~~~~~~~~~l~~~l~--~~--~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~- 162 (384)
T 2qby_B 91 ---EVGGTPQAVLSSLAGKLT--GF--SVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD- 162 (384)
T ss_dssp ---HHCSCHHHHHHHHHHHHH--CS--CCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS-
T ss_pred ---CCCCCHHHHHHHHHHHHC--CC--CCCCCCCCHHHHHHHHHHHHCCCCCEEEEECHHHHCCCCCCCEEHHHHHCCC-
T ss_conf ---289999999999999964--99--9998788899999999997456998899977777626777762288775577-
Q ss_pred CCCEEEEECCCHHHH--------HHCCC-CEE-CCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHC---CCHH-H
Q ss_conf 984799973540222--------10123-000-17855599999998632035567624999999996818---9614-6
Q 002559 299 NDCKYLVTTRNEAVY--------EITEA-EKV-ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCG---HHPL-T 364 (908)
Q Consensus 299 ~GskIIVTTR~~~va--------~~~~~-~~~-~L~~~ea~eLf~~~~~~~~~~~~~~l~~i~~~Iv~~C~---GlPL-A 364 (908)
.+..+|+||+..... ...+. ..+ +++.++..+++...+... .....-.++..+.+++.|+ |.|- |
T Consensus 163 ~~~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~G~~r~a 241 (384)
T 2qby_B 163 ANISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYG-LIKGTYDDEILSYIAAISAKEHGDARKA 241 (384)
T ss_dssp SCEEEEEECSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHT-SCTTSCCSHHHHHHHHHHHTTCCCHHHH
T ss_pred CCEEEEEEECCCCHHHHHCHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHH-CCCCCCCHHHHHHHHHHHHHCCCCHHHH
T ss_conf 656999997787467663878784289758879979999999999999852-5668769889999999997625879999
Q ss_pred HHHHHHHHH-----CCCCHHHHHHHHHHHCHHHCCCCCCCCCCCHHHHCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHCC
Q ss_conf 768635531-----168999999999986010017999987656011101123013044652159688999999956205
Q 002559 365 VAVMGKALR-----KELRSEKWEKAITDLSTFATCAPGPVSYVNEKEAENTLTIFGSFEFSLEAMPRDSRRLFIALAALS 439 (908)
Q Consensus 365 I~~ig~~L~-----~~~~~~eW~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~I~~~L~lSy~~L~~~~K~cfl~laiFp 439 (908)
+..+-.... ...+.+.+..+++.... ..+..+++.|+++.+..+..++...
T Consensus 242 ~~~l~~a~~~a~~~~~i~~~~v~~~~~~~~~------------------------~~~~~~~~~l~~~~~~~l~al~~~~ 297 (384)
T 2qby_B 242 VNLLFRAAQLASGGGIIRKEHVDKAIVDYEQ------------------------ERLIEAVKALPFHYKLALRSLIESE 297 (384)
T ss_dssp HHHHHHHHHHTTSSSCCCHHHHHHHHHHHHH------------------------HHHHHHHHSSCHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHC------------------------CHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 9999999998637996089999999999740------------------------3288999769998999999999720
Q ss_pred CCCCCCHHHHHHHHHHHHH----CCHHHHHHHHHHHCCCCCCC
Q ss_conf 8999997889999999721----11599999999885885112
Q 002559 440 WAEPVPEACLEAIWSILVQ----KSLFSLAVCKLVEGSLLMKD 478 (908)
Q Consensus 440 ~~~~i~~~~L~~lW~a~g~----~~~~e~~l~~Lv~rSLi~~~ 478 (908)
.+..+ ......+....|. ......++..|...+++...
T Consensus 298 ~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~l~~L~~~gli~~~ 339 (384)
T 2qby_B 298 DVMSA-HKMYTDLCNKFKQKPLSYRRFSDIISELDMFGIVKIR 339 (384)
T ss_dssp BHHHH-HHHHHHHHHHTTCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCHH-HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCEEEE
T ss_conf 55749-9999999997399989899999999999868987987
No 9
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=1.00 E-value=1 Score=100.94 Aligned_cols=280 Identities=13% Similarity=0.089 Sum_probs=160.4
Q ss_pred CCCCCCCCHHHHHHHHHHC---CCCCEEEEEEECCCCCHHHHHHHHHHCCCCCC-----CCCEEEEEEEEEECCCCCCCC
Q ss_conf 6777675189999998711---69926999992489976899999980998866-----563499813122204533699
Q 002559 158 EQGYPISSKSKFLRKLLEQ---EETHQVILIVGLSGIGKSCLARQVASDPPERF-----VGGAVELGFGQWCSRAACNGS 229 (908)
Q Consensus 158 ~~~~g~e~~~~~i~~LL~~---~~~~~vI~I~GmgGiGKTTLA~~v~~~~~~~F-----~~~~f~~~v~~wv~~~~c~~s 229 (908)
...+|+++..+.+..++.. ......+.|+|++|+||||+|+.+++.....+ ....++++. .
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~-----------~ 87 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNA-----------R 87 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEET-----------T
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEC-----------C
T ss_conf 98988799999999999999749999818998899998999999999999998740699737999979-----------8
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHC--CCCEEEEEECCCCHH----H---HHHHHHHC---
Q ss_conf 60689999999999999823344557999989999999999851--397067982488616----7---99973003---
Q 002559 230 KSDYQKRLARKISKFLVQIGFWKKIKDENSDLEYLCCLLQEALY--GKSILILLDDVWEQD----I---VERFAKLY--- 297 (908)
Q Consensus 230 ~~~~~~~i~~~I~~~L~~~g~~~~~~~~~~~~~~l~~~l~~~L~--~Kr~LLVLDDVw~~~----~---~e~l~~~~--- 297 (908)
.......+...+...+ +. .......+.......+.+.+. +++.+|+||+++... . +..+..+.
T Consensus 88 ~~~~~~~~~~~l~~~l---~~--~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~ 162 (387)
T 2v1u_A 88 HRETPYRVASAIAEAV---GV--RVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQEL 162 (387)
T ss_dssp TSCSHHHHHHHHHHHH---SC--CCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC
T ss_pred CCCCHHHHHHHHHHHH---CC--CCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCHHHHCCCCCCCHHHHHHHHCHHHC
T ss_conf 6899999999999996---78--889878899999999999973569869999826766514688776898285150014
Q ss_pred --CCCCEEEEECCCHHH--------HHHCCCCEE---CCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHC---CC
Q ss_conf --998479997354022--------210123000---17855599999998632035567624999999996818---96
Q 002559 298 --DNDCKYLVTTRNEAV--------YEITEAEKV---ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCG---HH 361 (908)
Q Consensus 298 --~~GskIIVTTR~~~v--------a~~~~~~~~---~L~~~ea~eLf~~~~~~~~~~~~~~l~~i~~~Iv~~C~---Gl 361 (908)
+.+..+|.||+.... ........+ +++.++..+++...+.... ....-.++..+.+++.++ |.
T Consensus 163 ~~~~~~~~I~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~G~ 241 (387)
T 2v1u_A 163 GDRVWVSLVGITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAF-NPGVLDPDVVPLCAALAAREHGD 241 (387)
T ss_dssp -----CEEEEECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHB-CTTTBCSSHHHHHHHHHHSSSCC
T ss_pred CCCCEEEEEEEECCCCHHHHHCHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHC-CCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 88941899999789862766387877117972786099799999999999998633-67888989999999999886567
Q ss_pred H-HHHHHHHHHHH-------CCCCHHHHHHHHHHHCHHHCCCCCCCCCCCHHHHCCCCCCCCHHHHHHCCCCHHHHHHHH
Q ss_conf 1-46768635531-------168999999999986010017999987656011101123013044652159688999999
Q 002559 362 P-LTVAVMGKALR-------KELRSEKWEKAITDLSTFATCAPGPVSYVNEKEAENTLTIFGSFEFSLEAMPRDSRRLFI 433 (908)
Q Consensus 362 P-LAI~~ig~~L~-------~~~~~~eW~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~I~~~L~lSy~~L~~~~K~cfl 433 (908)
| .++.++..+.. ...+.+.+..+++.... ..+.-++..|+++.+..++
T Consensus 242 ~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~~~------------------------~~~~~~~~~l~~~~~~~l~ 297 (387)
T 2v1u_A 242 ARRALDLLRVAGEIAERRREERVRREHVYSARAEIER------------------------DRVSEVVRTLPLHAKLVLL 297 (387)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHHH------------------------HHHHHHHHSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH------------------------CHHHHHHHCCCHHHHHHHH
T ss_conf 9999999999999999718997389999999999863------------------------4499999769999999999
Q ss_pred HHHHCCCC-CCCCHHHHHHHHHHH----HH----CCHHHHHHHHHHHCCCCCCC
Q ss_conf 95620589-999978899999997----21----11599999999885885112
Q 002559 434 ALAALSWA-EPVPEACLEAIWSIL----VQ----KSLFSLAVCKLVEGSLLMKD 478 (908)
Q Consensus 434 ~laiFp~~-~~i~~~~L~~lW~a~----g~----~~~~e~~l~~Lv~rSLi~~~ 478 (908)
.++....+ ..+....+.+..... |. ...+..+++.|...+++...
T Consensus 298 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~ 351 (387)
T 2v1u_A 298 SIMMLEDGGRPASTGEIYERYKELTSTLGLEHVTLRRVSGIISELDMLGIVKSR 351 (387)
T ss_dssp HHHHHSSSSCCEEHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCEEEE
T ss_conf 999996589887699999999999985499989899999999999868986888
No 10
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=1.00 E-value=1 Score=98.03 Aligned_cols=281 Identities=14% Similarity=0.155 Sum_probs=159.2
Q ss_pred CCCCCCCCCHHHHHHHHHHC---CCCCEEEEEEECCCCCHHHHHHHHHHCCCCCC--CCCEEEEEEEEEECCCCCCCCCC
Q ss_conf 56777675189999998711---69926999992489976899999980998866--56349981312220453369960
Q 002559 157 AEQGYPISSKSKFLRKLLEQ---EETHQVILIVGLSGIGKSCLARQVASDPPERF--VGGAVELGFGQWCSRAACNGSKS 231 (908)
Q Consensus 157 ~~~~~g~e~~~~~i~~LL~~---~~~~~vI~I~GmgGiGKTTLA~~v~~~~~~~F--~~~~f~~~v~~wv~~~~c~~s~~ 231 (908)
+...+|+++..+.+...+.. ......+.|+|++|+||||||+.+++.....+ ...+++++.. ..
T Consensus 19 p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~-----------~~ 87 (386)
T 2qby_A 19 PDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTR-----------QI 87 (386)
T ss_dssp CSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHH-----------HH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECC-----------CC
T ss_conf 8878876999999999999997089998189988999989999999999999973598369999898-----------88
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCC--CCEEEEEECCCCH------HHHHHHHHHC----CC
Q ss_conf 6899999999999998233445579999899999999998513--9706798248861------6799973003----99
Q 002559 232 DYQKRLARKISKFLVQIGFWKKIKDENSDLEYLCCLLQEALYG--KSILILLDDVWEQ------DIVERFAKLY----DN 299 (908)
Q Consensus 232 ~~~~~i~~~I~~~L~~~g~~~~~~~~~~~~~~l~~~l~~~L~~--Kr~LLVLDDVw~~------~~~e~l~~~~----~~ 299 (908)
.....+...+.. .++. .......+.......+.+.+.. ++.+||||+++.. +.+..+.... ..
T Consensus 88 ~~~~~~~~~i~~---~l~~--~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~ 162 (386)
T 2qby_A 88 DTPYRVLADLLE---SLDV--KVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKS 162 (386)
T ss_dssp CSHHHHHHHHTT---TTSC--CCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC-
T ss_pred CCHHHHHHHHHH---HHCC--CCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCCCHHHHHHHHCHHHCCCC
T ss_conf 999999999999---9588--88988889999999999998405986999981755663368677999885133326997
Q ss_pred CCEEEEECCCHHHHHH--------CCCCEE---CCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHC---CCHH-H
Q ss_conf 8479997354022210--------123000---17855599999998632035567624999999996818---9614-6
Q 002559 300 DCKYLVTTRNEAVYEI--------TEAEKV---ELSKDDIMEISKSILLYHSLLAEEELPAAAESLLERCG---HHPL-T 364 (908)
Q Consensus 300 GskIIVTTR~~~va~~--------~~~~~~---~L~~~ea~eLf~~~~~~~~~~~~~~l~~i~~~Iv~~C~---GlPL-A 364 (908)
+..+|+||+....... .....+ +++.++..+++...+.... ....-.++....+++.++ |.|. +
T Consensus 163 ~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~G~~r~~ 241 (386)
T 2qby_A 163 KISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAF-KPGVLPDNVIKLCAALAAREHGDARRA 241 (386)
T ss_dssp -EEEEEEESCGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHB-CSSCSCHHHHHHHHHHHHHTTCCHHHH
T ss_pred EEEEEEEECCCCHHHHHCHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHC-CCCCCCHHHHHHHHHHHHHHCCCHHHH
T ss_conf 1999999789871766388876127970587299799999999999998632-678779789999999987755789999
Q ss_pred HHHHHHHHH-------CCCCHHHHHHHHHHHCHHHCCCCCCCCCCCHHHHCCCCCCCCHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 768635531-------1689999999999860100179999876560111011230130446521596889999999562
Q 002559 365 VAVMGKALR-------KELRSEKWEKAITDLSTFATCAPGPVSYVNEKEAENTLTIFGSFEFSLEAMPRDSRRLFIALAA 437 (908)
Q Consensus 365 I~~ig~~L~-------~~~~~~eW~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~I~~~L~lSy~~L~~~~K~cfl~lai 437 (908)
+.++..... ...+...+..++..... ..+.-++..+++..+..+..++.
T Consensus 242 ~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~~~------------------------~~~~~~~~~l~~~~~~il~ai~~ 297 (386)
T 2qby_A 242 LDLLRVSGEIAERMKDTKVKEEYVYMAKEEIER------------------------DRVRDIILTLPFHSKLVLMAVVS 297 (386)
T ss_dssp HHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHH------------------------HHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH------------------------CHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 999999999998637986589999999999840------------------------25889997599989999999999
Q ss_pred CCC-C-CCCCHHHHHHHH----HHHHHC----CHHHHHHHHHHHCCCCCCC
Q ss_conf 058-9-999978899999----997211----1599999999885885112
Q 002559 438 LSW-A-EPVPEACLEAIW----SILVQK----SLFSLAVCKLVEGSLLMKD 478 (908)
Q Consensus 438 Fp~-~-~~i~~~~L~~lW----~a~g~~----~~~e~~l~~Lv~rSLi~~~ 478 (908)
+.+ + ..+....+.... ...|.. .....+++.|...+++...
T Consensus 298 ~~~~g~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~l~~L~~~gli~~~ 348 (386)
T 2qby_A 298 ISSEENVVSTTGAVYETYLNICKKLGVEAVTQRRVSDIINELDMVGILTAK 348 (386)
T ss_dssp HC-----CEEHHHHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHCCCCCEEHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCEEEE
T ss_conf 986589744599999999999986499989888999999999858987987
Done!