BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002562
(907 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 106 bits (265), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 90/288 (31%), Positives = 143/288 (49%), Gaps = 10/288 (3%)
Query: 99 GATCHITKLRVYALNKKGVIPEELVTLQYLTFLKIDQNFFTGPLPSFIGNLSRLMLLSVA 158
G+ + L+++ +G IP+EL+ ++ L L +D N TG +PS + N + L +S++
Sbjct: 436 GSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLS 495
Query: 159 HNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTY 218
+N +G +P+ +G L+ L +L NN+FSG +P E+G+ L L LN+ G IP+
Sbjct: 496 NNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 555
Query: 219 AKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGN--SFQGPIPXXXXXXXXXXXXR 276
K Q+ + GK +I N K GN FQG
Sbjct: 556 FK----QSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCN 611
Query: 277 I-SDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQIP 335
I S +Y +S F + ++ L + +++G IP IG + L L+L N+++G IP
Sbjct: 612 ITSRVYGGHTSPTFDNN-GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIP 670
Query: 336 RTLFNIGSLNYLFLGNNSLSGTLPTQKSE--NLQNIDLSYNHLSGPFP 381
+ ++ LN L L +N L G +P S L IDLS N+LSGP P
Sbjct: 671 DEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 718
Score = 102 bits (253), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 99/308 (32%), Positives = 144/308 (46%), Gaps = 13/308 (4%)
Query: 99 GATCHITKLRVYALNKKGVIPEELVTLQYLTFLKIDQNFFTGPLPSFIGNLSRLMLLSVA 158
G + L + G + T L L I N F GP+P L L LS+A
Sbjct: 217 GDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLA 274
Query: 159 HNVFSGSVPREL-GNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIP-S 216
N F+G +P L G LT L N+F G +PP G+ + LE L L+S GE+P
Sbjct: 275 ENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMD 334
Query: 217 TYAKLRNMQTLWASDAPFTGKIPDFIGNWT-KLKSLRFQGNSFQGPIPXXXXXXXXXXXX 275
T K+R ++ L S F+G++P+ + N + L +L N+F GPI
Sbjct: 335 TLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQ 394
Query: 276 RISDIYNVSSSLDFVMSLKN---LTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTG 332
+ + N + +L N L L L ++G+IPS +G L L+ L L N L G
Sbjct: 395 ELY-LQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEG 453
Query: 333 QIPRTLFNIGSLNYLFLGNNSLSGTLPTQKSE--NLQNIDLSYNHLSGPFPSWV--TSNL 388
+IP+ L + +L L L N L+G +P+ S NL I LS N L+G P W+ NL
Sbjct: 454 EIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENL 513
Query: 389 QMNLVANN 396
+ ++NN
Sbjct: 514 AILKLSNN 521
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/133 (36%), Positives = 69/133 (51%)
Query: 131 LKIDQNFFTGPLPSFIGNLSRLMLLSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTL 190
L + N FTG +P + N S L+ L ++ N SG++P LG+L +L L N G +
Sbjct: 396 LYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEI 455
Query: 191 PPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKS 250
P E+ + LE L L+ GEIPS + N+ + S+ TG+IP +IG L
Sbjct: 456 PQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAI 515
Query: 251 LRFQGNSFQGPIP 263
L+ NSF G IP
Sbjct: 516 LKLSNNSFSGNIP 528
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 73/145 (50%), Gaps = 1/145 (0%)
Query: 112 LNKKGVIPEELVTLQYLTFLKIDQNFFTGPLPSFIGNLSRLMLLSVAHNVFSGSVPRELG 171
L +G+ E+L L I + G N +M L +++N+ SG +P+E+G
Sbjct: 591 LEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIG 650
Query: 172 NLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASD 231
++ L +L+ G+N+ SG++P E+G+L L L L+S G IP + L + + S+
Sbjct: 651 SMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSN 710
Query: 232 APFTGKIPDFIGNWTKLKSLRFQGN 256
+G IP+ +G + +F N
Sbjct: 711 NNLSGPIPE-MGQFETFPPAKFLNN 734
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 37/72 (51%)
Query: 314 IGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQKSENLQNIDLSY 373
+G+ LQ LD+S N L+G R + L L + +N G +P ++LQ + L+
Sbjct: 216 LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAE 275
Query: 374 NHLSGPFPSWVT 385
N +G P +++
Sbjct: 276 NKFTGEIPDFLS 287
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 72/160 (45%), Gaps = 23/160 (14%)
Query: 248 LKSLRFQGNSFQGPIPXXXXXXXXXXXXRISDIYNVSS-SLDFV------MSLKNLTDLS 300
L SL NS GP+ NVSS +LDF + L +L L
Sbjct: 99 LTSLDLSRNSLSGPVTTLTSLGSCSGL----KFLNVSSNTLDFPGKVSGGLKLNSLEVLD 154
Query: 301 LRNALITGS------IPSGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSL 354
L I+G+ + G GEL++L +S N ++G + + +L +L + +N+
Sbjct: 155 LSANSISGANVVGWVLSDGCGELKHLA---ISGNKISGDVDVS--RCVNLEFLDVSSNNF 209
Query: 355 SGTLP-TQKSENLQNIDLSYNHLSGPFPSWVTSNLQMNLV 393
S +P LQ++D+S N LSG F +++ ++ L+
Sbjct: 210 STGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLL 249
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 106 bits (265), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 90/288 (31%), Positives = 143/288 (49%), Gaps = 10/288 (3%)
Query: 99 GATCHITKLRVYALNKKGVIPEELVTLQYLTFLKIDQNFFTGPLPSFIGNLSRLMLLSVA 158
G+ + L+++ +G IP+EL+ ++ L L +D N TG +PS + N + L +S++
Sbjct: 439 GSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLS 498
Query: 159 HNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTY 218
+N +G +P+ +G L+ L +L NN+FSG +P E+G+ L L LN+ G IP+
Sbjct: 499 NNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 558
Query: 219 AKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGN--SFQGPIPXXXXXXXXXXXXR 276
K Q+ + GK +I N K GN FQG
Sbjct: 559 FK----QSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCN 614
Query: 277 I-SDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQIP 335
I S +Y +S F + ++ L + +++G IP IG + L L+L N+++G IP
Sbjct: 615 ITSRVYGGHTSPTFDNN-GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIP 673
Query: 336 RTLFNIGSLNYLFLGNNSLSGTLPTQKSE--NLQNIDLSYNHLSGPFP 381
+ ++ LN L L +N L G +P S L IDLS N+LSGP P
Sbjct: 674 DEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721
Score = 102 bits (253), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 99/308 (32%), Positives = 144/308 (46%), Gaps = 13/308 (4%)
Query: 99 GATCHITKLRVYALNKKGVIPEELVTLQYLTFLKIDQNFFTGPLPSFIGNLSRLMLLSVA 158
G + L + G + T L L I N F GP+P L L LS+A
Sbjct: 220 GDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLA 277
Query: 159 HNVFSGSVPREL-GNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIP-S 216
N F+G +P L G LT L N+F G +PP G+ + LE L L+S GE+P
Sbjct: 278 ENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMD 337
Query: 217 TYAKLRNMQTLWASDAPFTGKIPDFIGNWT-KLKSLRFQGNSFQGPIPXXXXXXXXXXXX 275
T K+R ++ L S F+G++P+ + N + L +L N+F GPI
Sbjct: 338 TLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQ 397
Query: 276 RISDIYNVSSSLDFVMSLKN---LTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTG 332
+ + N + +L N L L L ++G+IPS +G L L+ L L N L G
Sbjct: 398 ELY-LQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEG 456
Query: 333 QIPRTLFNIGSLNYLFLGNNSLSGTLPTQKSE--NLQNIDLSYNHLSGPFPSWV--TSNL 388
+IP+ L + +L L L N L+G +P+ S NL I LS N L+G P W+ NL
Sbjct: 457 EIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENL 516
Query: 389 QMNLVANN 396
+ ++NN
Sbjct: 517 AILKLSNN 524
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/133 (36%), Positives = 69/133 (51%)
Query: 131 LKIDQNFFTGPLPSFIGNLSRLMLLSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTL 190
L + N FTG +P + N S L+ L ++ N SG++P LG+L +L L N G +
Sbjct: 399 LYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEI 458
Query: 191 PPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKS 250
P E+ + LE L L+ GEIPS + N+ + S+ TG+IP +IG L
Sbjct: 459 PQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAI 518
Query: 251 LRFQGNSFQGPIP 263
L+ NSF G IP
Sbjct: 519 LKLSNNSFSGNIP 531
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 73/145 (50%), Gaps = 1/145 (0%)
Query: 112 LNKKGVIPEELVTLQYLTFLKIDQNFFTGPLPSFIGNLSRLMLLSVAHNVFSGSVPRELG 171
L +G+ E+L L I + G N +M L +++N+ SG +P+E+G
Sbjct: 594 LEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIG 653
Query: 172 NLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASD 231
++ L +L+ G+N+ SG++P E+G+L L L L+S G IP + L + + S+
Sbjct: 654 SMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSN 713
Query: 232 APFTGKIPDFIGNWTKLKSLRFQGN 256
+G IP+ +G + +F N
Sbjct: 714 NNLSGPIPE-MGQFETFPPAKFLNN 737
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 37/72 (51%)
Query: 314 IGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQKSENLQNIDLSY 373
+G+ LQ LD+S N L+G R + L L + +N G +P ++LQ + L+
Sbjct: 219 LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAE 278
Query: 374 NHLSGPFPSWVT 385
N +G P +++
Sbjct: 279 NKFTGEIPDFLS 290
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 73/160 (45%), Gaps = 23/160 (14%)
Query: 248 LKSLRFQGNSFQGPIPXXXXXXXXXXXXRISDIYNVSS-SLDFV------MSLKNLTDLS 300
L SL NS GP+ + NVSS +LDF + L +L L
Sbjct: 102 LTSLDLSRNSLSGPVTTLTSLGSCSGLKFL----NVSSNTLDFPGKVSGGLKLNSLEVLD 157
Query: 301 LRNALITGS------IPSGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSL 354
L I+G+ + G GEL++L +S N ++G + + +L +L + +N+
Sbjct: 158 LSANSISGANVVGWVLSDGCGELKHLA---ISGNKISGDVDVS--RCVNLEFLDVSSNNF 212
Query: 355 SGTLP-TQKSENLQNIDLSYNHLSGPFPSWVTSNLQMNLV 393
S +P LQ++D+S N LSG F +++ ++ L+
Sbjct: 213 STGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLL 252
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 105 bits (262), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 84/256 (32%), Positives = 117/256 (45%), Gaps = 17/256 (6%)
Query: 89 AIVCDCTFDNGATCHITKLRVYALN--KKGVIPEELVTLQYLTFLKIDQ-NFFTGPLPSF 145
++CD + T + L + LN K IP L L YL FL I N GP+P
Sbjct: 40 GVLCD---TDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPA 96
Query: 146 IGNLSRLMLLSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYL 205
I L++L L + H SG++P L +K L L F N SGTLPP I +L L +
Sbjct: 97 IAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITF 156
Query: 206 NSWGAGGEIPSTYAKLRNMQT-LWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPX 264
+ G IP +Y + T + S TGKIP N L + N +G
Sbjct: 157 DGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEG---- 211
Query: 265 XXXXXXXXXXXRISDIYNVSSSLDFVMSL----KNLTDLSLRNALITGSIPSGIGELQNL 320
I+ +SL F + KNL L LRN I G++P G+ +L+ L
Sbjct: 212 -DASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFL 270
Query: 321 QTLDLSFNNLTGQIPR 336
+L++SFNNL G+IP+
Sbjct: 271 HSLNVSFNNLCGEIPQ 286
Score = 69.7 bits (169), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 65/222 (29%), Positives = 91/222 (40%), Gaps = 26/222 (11%)
Query: 166 VPRELGNLKELTVLSFGN-NNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNM 224
+P L NL L L G NN G +PP I L +L LY+ G IP ++++ +
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 225 QTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPXXXXXXXXXXXXRISDIYNVS 284
TL S +G +P I + L + F GN G IP D Y
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP---------------DSYGSF 172
Query: 285 SSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSL 344
S L T +++ +TG IP L NL +DLS N L G + +
Sbjct: 173 SKL--------FTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNT 223
Query: 345 NYLFLGNNSLSGTL-PTQKSENLQNIDLSYNHLSGPFPSWVT 385
+ L NSL+ L S+NL +DL N + G P +T
Sbjct: 224 QKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLT 265
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 53/99 (53%), Gaps = 7/99 (7%)
Query: 310 IPSGIGELQNLQTLDLS-FNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQKSE--NL 366
IPS + L L L + NNL G IP + + L+YL++ + ++SG +P S+ L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 367 QNIDLSYNHLSGPFPSWVTSNLQMNLVANNFTFDRSNIS 405
+D SYN LSG P ++S NLV TFD + IS
Sbjct: 128 VTLDFSYNALSGTLPPSISS--LPNLVG--ITFDGNRIS 162
>pdb|3TL8|A Chain A, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|D Chain D, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|G Chain G, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|H Chain H, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
Length = 349
Score = 88.2 bits (217), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/116 (43%), Positives = 68/116 (58%), Gaps = 15/116 (12%)
Query: 722 GYLAPEYAMRGHLTEKADVFSFGVAALEIISGR--------ANSDNSLDMEKIYLLEWAW 773
G++APEY G +EK DVF +GV LE+I+G+ AN D+ + LL+W
Sbjct: 208 GHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDD------VMLLDWVK 261
Query: 774 NLHENNQSLGLVDPTLT-EFNDKEALRVIGVALLCTQASPMMRPPMSRVVAMLAGD 828
L + + LVD L + D+E ++I VALLCTQ+SPM RP MS VV ML GD
Sbjct: 262 GLLKEKKLEALVDVDLQGNYKDEEVEQLIQVALLCTQSSPMERPKMSEVVRMLEGD 317
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 30/59 (50%), Gaps = 12/59 (20%)
Query: 662 RRKKDND---------DEEVLVGIDSKPNTFSYAELRSATQDFDPSNKLGEGGYGPVYK 711
RRKK D D EV +G + FS EL+ A+ +F N LG GG+G VYK
Sbjct: 1 RRKKPQDHFFDVPAEEDPEVHLG---QLKRFSLRELQVASDNFSNKNILGRGGFGKVYK 56
>pdb|3UIM|A Chain A, Structural Basis For The Impact Of Phosphorylation On
Plant Receptor- Like Kinase Bak1 Activation
pdb|3ULZ|A Chain A, Crystal Structure Of Apo Bak1
Length = 326
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/116 (43%), Positives = 68/116 (58%), Gaps = 15/116 (12%)
Query: 722 GYLAPEYAMRGHLTEKADVFSFGVAALEIISGR--------ANSDNSLDMEKIYLLEWAW 773
G++APEY G +EK DVF +GV LE+I+G+ AN D+ + LL+W
Sbjct: 200 GHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDD------VMLLDWVK 253
Query: 774 NLHENNQSLGLVDPTLT-EFNDKEALRVIGVALLCTQASPMMRPPMSRVVAMLAGD 828
L + + LVD L + D+E ++I VALLCTQ+SPM RP MS VV ML GD
Sbjct: 254 GLLKEKKLEALVDVDLQGNYKDEEVEQLIQVALLCTQSSPMERPKMSEVVRMLEGD 309
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 667 NDDEEVLVGIDSKPNTFSYAELRSATQDFDPSNKLGEGGYGPVYK 711
+D EV +G + FS EL+ A+ +F N LG GG+G VYK
Sbjct: 7 EEDPEVHLG---QLKRFSLRELQVASDNFXNKNILGRGGFGKVYK 48
>pdb|3HGK|A Chain A, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|B Chain B, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|C Chain C, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|D Chain D, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
Length = 327
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/102 (42%), Positives = 57/102 (55%), Gaps = 1/102 (0%)
Query: 722 GYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQS 781
GY+ PEY ++G LTEK+DV+SFGV E++ R+ SL E + L EWA H N Q
Sbjct: 206 GYIDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREMVNLAEWAVESHNNGQL 265
Query: 782 LGLVDPTLTEFNDKEALRVIG-VALLCTQASPMMRPPMSRVV 822
+VDP L + E+LR G A+ C S RP M V+
Sbjct: 266 EQIVDPNLADKIRPESLRKFGDTAVKCLALSSEDRPSMGDVL 307
>pdb|2QKW|B Chain B, Structural Basis For Activation Of Plant Immunity By
Bacterial Effector Protein Avrpto
Length = 321
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/102 (42%), Positives = 57/102 (55%), Gaps = 1/102 (0%)
Query: 722 GYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQS 781
GY+ PEY ++G LTEK+DV+SFGV E++ R+ SL E + L EWA H N Q
Sbjct: 206 GYIDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREMVNLAEWAVESHNNGQL 265
Query: 782 LGLVDPTLTEFNDKEALRVIG-VALLCTQASPMMRPPMSRVV 822
+VDP L + E+LR G A+ C S RP M V+
Sbjct: 266 EQIVDPNLADKIRPESLRKFGDTAVKCLALSSEDRPSMGDVL 307
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 49.3 bits (116), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 89/313 (28%), Positives = 132/313 (42%), Gaps = 44/313 (14%)
Query: 103 HITKLRVYALNKKGVIP-EELVTLQYLTFLKIDQNFFTGPLPSFIGNLSRLMLLSVAHNV 161
++TKL +N + L L LT L + N T P + NL+ L L ++ N
Sbjct: 87 NLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNT 144
Query: 162 FSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKL 221
S L L L LSFGN L P + NL LE+L ++S S AKL
Sbjct: 145 ISD--ISALSGLTSLQQLSFGNQ--VTDLKP-LANLTTLERLDISSNKVSD--ISVLAKL 197
Query: 222 RNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPXXXXXXXXXXXXRISDIY 281
N+++L A++ + P +G T L L GN ++ DI
Sbjct: 198 TNLESLIATNNQISDITP--LGILTNLDELSLNGN-------------------QLKDIG 236
Query: 282 NVSSSLDFVMSLKNLTDLSLRNALITGSIP-SGIGELQNLQTLDLSFNNLTGQIPRTLFN 340
++S L NLTDL L N I+ P SG+ +L L+ L N ++ P L
Sbjct: 237 TLAS-------LTNLTDLDLANNQISNLAPLSGLTKLTELK---LGANQISNISP--LAG 284
Query: 341 IGSLNYLFLGNNSLSGTLPTQKSENLQNIDLSYNHLSGPFPSWVTSNLQMNLVANNFTFD 400
+ +L L L N L P +NL + L +N++S P + LQ ANN D
Sbjct: 285 LTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSD 344
Query: 401 RSNISVFPGLHCL 413
S+++ ++ L
Sbjct: 345 VSSLANLTNINWL 357
Score = 32.7 bits (73), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 66/241 (27%), Positives = 104/241 (43%), Gaps = 28/241 (11%)
Query: 122 LVTLQYLTFLKIDQNFFTGPLPSFIGNLSRLMLLSVAHNVFSG-SVPRELGNLKELTVLS 180
L +LQ L+F N T P + NL+ L L ++ N S SV +L NL+ L
Sbjct: 154 LTSLQQLSF----GNQVTDLKP--LANLTTLERLDISSNKVSDISVLAKLTNLESLIA-- 205
Query: 181 FGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPS--TYAKLRNMQTLWASDAPFTGKI 238
NN S P +G L L++L LN G ++ T A L N+ L ++ +
Sbjct: 206 -TNNQISDITP--LGILTNLDELSLN----GNQLKDIGTLASLTNLTDLDLANNQISNLA 258
Query: 239 PDFIGNWTKLKSLRFQGNSFQGPIPXXXXXXXXXXXXRISDIYNVSSSLDFVMSLKNLTD 298
P + TKL L+ N P + + ++S + +LKNLT
Sbjct: 259 P--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISP----ISNLKNLTY 312
Query: 299 LSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTL 358
L+L I+ P + L LQ L + N ++ +L N+ ++N+L G+N +S
Sbjct: 313 LTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLT 368
Query: 359 P 359
P
Sbjct: 369 P 369
Score = 30.4 bits (67), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 48/104 (46%), Gaps = 7/104 (6%)
Query: 313 GIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQKSENLQNIDLS 372
G+ L NL ++ S N LT P L N+ L + + NN ++ P NL + L
Sbjct: 62 GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLF 119
Query: 373 YNHLSGPFPSWVTSNL-QMNLVANNFTFDRSNISVFPGLHCLQR 415
N ++ P +NL ++ L +N S+IS GL LQ+
Sbjct: 120 NNQITDIDPLKNLTNLNRLELSSNTI----SDISALSGLTSLQQ 159
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 49.3 bits (116), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 86/313 (27%), Positives = 132/313 (42%), Gaps = 43/313 (13%)
Query: 103 HITKLRVYALNKKGVIP-EELVTLQYLTFLKIDQNFFTGPLPSFIGNLSRLMLLSVAHNV 161
++TKL +N + L L LT L + N T P + NL+ L L ++ N
Sbjct: 83 NLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNT 140
Query: 162 FSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKL 221
S L L L LSF +N + P + NL LE+L ++S S AKL
Sbjct: 141 ISD--ISALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVSD--ISVLAKL 194
Query: 222 RNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPXXXXXXXXXXXXRISDIY 281
N+++L A++ + P +G T L L GN ++ DI
Sbjct: 195 TNLESLIATNNQISDITP--LGILTNLDELSLNGN-------------------QLKDIG 233
Query: 282 NVSSSLDFVMSLKNLTDLSLRNALITGSIP-SGIGELQNLQTLDLSFNNLTGQIPRTLFN 340
++S L NLTDL L N I+ P SG+ +L L+ L N ++ P L
Sbjct: 234 TLAS-------LTNLTDLDLANNQISNLAPLSGLTKLTELK---LGANQISNISP--LAG 281
Query: 341 IGSLNYLFLGNNSLSGTLPTQKSENLQNIDLSYNHLSGPFPSWVTSNLQMNLVANNFTFD 400
+ +L L L N L P +NL + L +N++S P + LQ +NN D
Sbjct: 282 LTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFSNNKVSD 341
Query: 401 RSNISVFPGLHCL 413
S+++ ++ L
Sbjct: 342 VSSLANLTNINWL 354
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 67/241 (27%), Positives = 104/241 (43%), Gaps = 27/241 (11%)
Query: 122 LVTLQYLTFLKIDQNFFTGPLPSFIGNLSRLMLLSVAHNVFSG-SVPRELGNLKELTVLS 180
L +LQ L+F N T P + NL+ L L ++ N S SV +L NL+ L
Sbjct: 150 LTSLQQLSF---SSNQVTDLKP--LANLTTLERLDISSNKVSDISVLAKLTNLESLIA-- 202
Query: 181 FGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPS--TYAKLRNMQTLWASDAPFTGKI 238
NN S P +G L L++L LN G ++ T A L N+ L ++ +
Sbjct: 203 -TNNQISDITP--LGILTNLDELSLN----GNQLKDIGTLASLTNLTDLDLANNQISNLA 255
Query: 239 PDFIGNWTKLKSLRFQGNSFQGPIPXXXXXXXXXXXXRISDIYNVSSSLDFVMSLKNLTD 298
P + TKL L+ N P + + ++S + +LKNLT
Sbjct: 256 P--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISP----ISNLKNLTY 309
Query: 299 LSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTL 358
L+L I+ P + L LQ L S N ++ +L N+ ++N+L G+N +S
Sbjct: 310 LTLYFNNISDISP--VSSLTKLQRLFFSNNKVSD--VSSLANLTNINWLSAGHNQISDLT 365
Query: 359 P 359
P
Sbjct: 366 P 366
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 52/111 (46%), Gaps = 8/111 (7%)
Query: 313 GIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQKSENLQNIDLS 372
G+ L NL ++ S N LT P L N+ L + + NN ++ P NL + L
Sbjct: 58 GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLF 115
Query: 373 YNHLSGPFPSWVTSNL-QMNLVANNFTFDRSNISVFPGLHCLQR-NFPCNR 421
N ++ P +NL ++ L +N S+IS GL LQ+ +F N+
Sbjct: 116 NNQITDIDPLKNLTNLNRLELSSNTI----SDISALSGLTSLQQLSFSSNQ 162
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 87/313 (27%), Positives = 132/313 (42%), Gaps = 44/313 (14%)
Query: 103 HITKLRVYALNKKGVIP-EELVTLQYLTFLKIDQNFFTGPLPSFIGNLSRLMLLSVAHNV 161
++TKL +N + L L LT L + N T P + NL+ L L ++ N
Sbjct: 83 NLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNT 140
Query: 162 FSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKL 221
S L L L L+FGN L P + NL LE+L ++S S AKL
Sbjct: 141 ISD--ISALSGLTSLQQLNFGNQ--VTDLKP-LANLTTLERLDISSNKVSD--ISVLAKL 193
Query: 222 RNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPXXXXXXXXXXXXRISDIY 281
N+++L A++ + P +G T L L GN ++ DI
Sbjct: 194 TNLESLIATNNQISDITP--LGILTNLDELSLNGN-------------------QLKDIG 232
Query: 282 NVSSSLDFVMSLKNLTDLSLRNALITGSIP-SGIGELQNLQTLDLSFNNLTGQIPRTLFN 340
++S L NLTDL L N I+ P SG+ +L L+ L N ++ P L
Sbjct: 233 TLAS-------LTNLTDLDLANNQISNLAPLSGLTKLTELK---LGANQISNISP--LAG 280
Query: 341 IGSLNYLFLGNNSLSGTLPTQKSENLQNIDLSYNHLSGPFPSWVTSNLQMNLVANNFTFD 400
+ +L L L N L P +NL + L +N++S P + LQ +NN D
Sbjct: 281 LTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFSNNKVSD 340
Query: 401 RSNISVFPGLHCL 413
S+++ ++ L
Sbjct: 341 VSSLANLTNINWL 353
Score = 33.5 bits (75), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 59/217 (27%), Positives = 94/217 (43%), Gaps = 22/217 (10%)
Query: 146 IGNLSRLMLLSVAHNVFSG-SVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLY 204
+ NL+ L L ++ N S SV +L NL+ L NN S P +G L L++L
Sbjct: 168 LANLTTLERLDISSNKVSDISVLAKLTNLESLIA---TNNQISDITP--LGILTNLDELS 222
Query: 205 LNSWGAGGEIPS--TYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPI 262
LN G ++ T A L N+ L ++ + P + TKL L+ N
Sbjct: 223 LN----GNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNIS 276
Query: 263 PXXXXXXXXXXXXRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQT 322
P + + ++S + +LKNLT L+L I+ P + L LQ
Sbjct: 277 PLAGLTALTNLELNENQLEDISP----ISNLKNLTYLTLYFNNISDISP--VSSLTKLQR 330
Query: 323 LDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLP 359
L S N ++ +L N+ ++N+L G+N +S P
Sbjct: 331 LFFSNNKVSD--VSSLANLTNINWLSAGHNQISDLTP 365
Score = 30.4 bits (67), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 50/107 (46%), Gaps = 8/107 (7%)
Query: 313 GIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQKSENLQNIDLS 372
G+ L NL ++ S N LT P L N+ L + + NN ++ P NL + L
Sbjct: 58 GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLF 115
Query: 373 YNHLSGPFPSWVTSNL-QMNLVANNFTFDRSNISVFPGLHCLQR-NF 417
N ++ P +NL ++ L +N S+IS GL LQ+ NF
Sbjct: 116 NNQITDIDPLKNLTNLNRLELSSNTI----SDISALSGLTSLQQLNF 158
>pdb|2NRY|A Chain A, Crystal Structure Of Irak-4
pdb|2NRY|B Chain B, Crystal Structure Of Irak-4
pdb|2NRY|C Chain C, Crystal Structure Of Irak-4
pdb|2NRY|D Chain D, Crystal Structure Of Irak-4
Length = 307
Score = 46.2 bits (108), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 48/104 (46%), Gaps = 2/104 (1%)
Query: 722 GYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQS 781
Y+APE A+RG +T K+D++SFGV LEII+G D + ++ L E
Sbjct: 200 AYMAPE-ALRGEITPKSDIYSFGVVLLEIITGLPAVDEHRE-PQLLLDIKEEIEDEEKTI 257
Query: 782 LGLVDPTLTEFNDKEALRVIGVALLCTQASPMMRPPMSRVVAML 825
+D + + + + VA C RP + +V +L
Sbjct: 258 EDYIDKKMNDADSTSVEAMYSVASQCLHEKKNKRPDIKKVQQLL 301
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 28/41 (68%), Gaps = 6/41 (14%)
Query: 677 DSKPNTFSYAELRSATQDFDPS------NKLGEGGYGPVYK 711
D++ ++FS+ EL++ T +FD NK+GEGG+G VYK
Sbjct: 9 DTRFHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYK 49
>pdb|2NRU|A Chain A, Crystal Structure Of Irak-4
pdb|2NRU|B Chain B, Crystal Structure Of Irak-4
pdb|2NRU|C Chain C, Crystal Structure Of Irak-4
pdb|2NRU|D Chain D, Crystal Structure Of Irak-4
Length = 307
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 48/104 (46%), Gaps = 2/104 (1%)
Query: 722 GYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQS 781
Y+APE A+RG +T K+D++SFGV LEII+G D + ++ L E
Sbjct: 200 AYMAPE-ALRGEITPKSDIYSFGVVLLEIITGLPAVDEHRE-PQLLLDIKEEIEDEEKTI 257
Query: 782 LGLVDPTLTEFNDKEALRVIGVALLCTQASPMMRPPMSRVVAML 825
+D + + + + VA C RP + +V +L
Sbjct: 258 EDYIDKKMNDADSTSVEAMYSVASQCLHEKKNKRPDIKKVQQLL 301
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 28/41 (68%), Gaps = 6/41 (14%)
Query: 677 DSKPNTFSYAELRSATQDFDPS------NKLGEGGYGPVYK 711
D++ ++FS+ EL++ T +FD NK+GEGG+G VYK
Sbjct: 9 DTRFHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYK 49
>pdb|2OIB|A Chain A, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|B Chain B, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|C Chain C, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|D Chain D, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIC|A Chain A, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|B Chain B, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|C Chain C, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|D Chain D, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OID|A Chain A, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|B Chain B, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|C Chain C, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|D Chain D, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
Length = 301
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 48/104 (46%), Gaps = 2/104 (1%)
Query: 722 GYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQS 781
Y+APE A+RG +T K+D++SFGV LEII+G D + ++ L E
Sbjct: 194 AYMAPE-ALRGEITPKSDIYSFGVVLLEIITGLPAVDEHRE-PQLLLDIKEEIEDEEKTI 251
Query: 782 LGLVDPTLTEFNDKEALRVIGVALLCTQASPMMRPPMSRVVAML 825
+D + + + + VA C RP + +V +L
Sbjct: 252 EDYIDKKMNDADSTSVEAMYSVASQCLHEKKNKRPDIKKVQQLL 295
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 28/41 (68%), Gaps = 6/41 (14%)
Query: 677 DSKPNTFSYAELRSATQDFDPS------NKLGEGGYGPVYK 711
D++ ++FS+ EL++ T +FD NK+GEGG+G VYK
Sbjct: 3 DTRFHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYK 43
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 69/164 (42%), Gaps = 17/164 (10%)
Query: 101 TCHITKLRVYALNKKGVIPEELVTLQYLTFL-----KIDQNFFTGPLPSFIGNLSRLMLL 155
TC ++K +++AL K + L+ LT KID N F G L+ L+ L
Sbjct: 279 TCDLSKSKIFALLKS--VFSHFTDLEQLTLAQNEINKIDDNAFWG--------LTHLLKL 328
Query: 156 SVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIP 215
+++ N R NL +L VL N+ L L++L L++
Sbjct: 329 NLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPD 388
Query: 216 STYAKLRNMQTLWASDAPFTGKIP--DFIGNWTKLKSLRFQGNS 257
+ +L ++Q +W P+ P D++ W S + QG++
Sbjct: 389 GIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSA 432
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
Query: 118 IPEELVTLQYLTFLKIDQNFFTGPLPSFIGNLSRLMLLSVAHNVFSGSVPRELGNLKELT 177
I + +LT L ++ N T LP+ I NLS L +L ++HN + S+P ELG+ +L
Sbjct: 239 ISANIFKYDFLTRLYLNGNSLTE-LPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLK 296
Query: 178 VLSFGNNNFSGTLPPEIGNLAKLEQL 203
F +N + TLP E GNL L+ L
Sbjct: 297 YFYFFDNMVT-TLPWEFGNLCNLQFL 321
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 6/80 (7%)
Query: 280 IYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQIPRTLF 339
I+N+S++ + LT L L +T +P+ I L NL+ LDLS N LT +P L
Sbjct: 236 IFNISAN---IFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTS-LPAELG 290
Query: 340 NIGSLNYLFLGNNSLSGTLP 359
+ L Y + +N ++ TLP
Sbjct: 291 SCFQLKYFYFFDNMVT-TLP 309
>pdb|2O8Y|A Chain A, Apo Irak4 Kinase Domain
pdb|2O8Y|B Chain B, Apo Irak4 Kinase Domain
Length = 298
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 45/104 (43%), Gaps = 2/104 (1%)
Query: 722 GYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQS 781
Y APE A+RG +T K+D++SFGV LEII+G D + ++ L E
Sbjct: 191 AYXAPE-ALRGEITPKSDIYSFGVVLLEIITGLPAVDEHRE-PQLLLDIKEEIEDEEKTI 248
Query: 782 LGLVDPTLTEFNDKEALRVIGVALLCTQASPMMRPPMSRVVAML 825
+D + + VA C RP + +V +L
Sbjct: 249 EDYIDKKXNDADSTSVEAXYSVASQCLHEKKNKRPDIKKVQQLL 292
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 26/40 (65%), Gaps = 6/40 (15%)
Query: 678 SKPNTFSYAELRSATQDFDPS------NKLGEGGYGPVYK 711
++ ++FS+ EL++ T +FD NK GEGG+G VYK
Sbjct: 1 TRFHSFSFYELKNVTNNFDERPISVGGNKXGEGGFGVVYK 40
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 83/214 (38%), Gaps = 30/214 (14%)
Query: 154 LLSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGE 213
LL + +N + + NLK L L NN S P L KLE+LYL S E
Sbjct: 56 LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL-SKNQLKE 114
Query: 214 IPSTYAKLRNMQTLWASDAPFTGKIPDFIGN-----------WTKLKSLRFQGNSFQGPI 262
+P K +Q L + T K+ + N LKS + +FQG
Sbjct: 115 LPEKMPK--TLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQG-- 169
Query: 263 PXXXXXXXXXXXXRISD--IYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNL 320
RI+D I + L +LT+L L IT + + L NL
Sbjct: 170 ------MKKLSYIRIADTNITTIPQGLP-----PSLTELHLDGNKITKVDAASLKGLNNL 218
Query: 321 QTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSL 354
L LSFN+++ +L N L L L NN L
Sbjct: 219 AKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL 252
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 83/214 (38%), Gaps = 30/214 (14%)
Query: 154 LLSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGE 213
LL + +N + + NLK L L NN S P L KLE+LYL S E
Sbjct: 56 LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL-SKNQLKE 114
Query: 214 IPSTYAKLRNMQTLWASDAPFTGKIPDFIGN-----------WTKLKSLRFQGNSFQGPI 262
+P K +Q L + T K+ + N LKS + +FQG
Sbjct: 115 LPEKMPK--TLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQG-- 169
Query: 263 PXXXXXXXXXXXXRISD--IYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNL 320
RI+D I + L +LT+L L IT + + L NL
Sbjct: 170 ------MKKLSYIRIADTNITTIPQGLP-----PSLTELHLDGNKITKVDAASLKGLNNL 218
Query: 321 QTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSL 354
L LSFN+++ +L N L L L NN L
Sbjct: 219 AKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL 252
>pdb|1IRK|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Human Insulin Receptor
Length = 306
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 45/108 (41%), Gaps = 16/108 (14%)
Query: 723 YLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSL 782
++APE G T +D++SFGV EI S L E + N Q L
Sbjct: 198 WMAPESLKDGVFTTSSDMWSFGVVLWEITS---------------LAEQPYQGLSNEQVL 242
Query: 783 GLV-DPTLTEFNDKEALRVIGVALLCTQASPMMRPPMSRVVAMLAGDI 829
V D + D RV + +C Q +P MRP +V +L D+
Sbjct: 243 KFVMDGGYLDQPDNCPERVTDLMRMCWQFNPKMRPTFLEIVNLLKDDL 290
>pdb|1I44|A Chain A, Crystallographic Studies Of An Activation Loop Mutant Of
The Insulin Receptor Tyrosine Kinase
Length = 306
Score = 38.5 bits (88), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 45/108 (41%), Gaps = 16/108 (14%)
Query: 723 YLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSL 782
++APE G T +D++SFGV EI S L E + N Q L
Sbjct: 198 WMAPESLKDGVFTTSSDMWSFGVVLWEITS---------------LAEQPYQGLSNEQVL 242
Query: 783 GLV-DPTLTEFNDKEALRVIGVALLCTQASPMMRPPMSRVVAMLAGDI 829
V D + D RV + +C Q +P MRP +V +L D+
Sbjct: 243 KFVMDGGYLDQPDNCPERVTDLMRMCWQFNPKMRPTFLEIVNLLKDDL 290
>pdb|2Z8C|A Chain A, Phosphorylated Insulin Receptor Tyrosine Kinase In Complex
With (4-{[5-Carbamoyl-4-(3-Methylanilino)pyrimidin-2-
Yl]amino}phenyl)acetic Acid
Length = 303
Score = 38.5 bits (88), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 56/141 (39%), Gaps = 30/141 (21%)
Query: 692 TQDFDPSNKLGEGGYG--PVYKKTQLMLSNFHGYLAPEYAMRGHLTEKADVFSFGVAALE 749
T+D ++ +GG G PV ++APE G T +D++SFGV E
Sbjct: 174 TRDIXETDXXRKGGKGLLPVR------------WMAPESLKDGVFTTSSDMWSFGVVLWE 221
Query: 750 IISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLV-DPTLTEFNDKEALRVIGVALLCT 808
I S L E + N Q L V D + D RV + +C
Sbjct: 222 ITS---------------LAEQPYQGLSNEQVLKFVMDGGYLDQPDNCPERVTDLMRMCW 266
Query: 809 QASPMMRPPMSRVVAMLAGDI 829
Q +P MRP +V +L D+
Sbjct: 267 QFNPKMRPTFLEIVNLLKDDL 287
>pdb|1IR3|A Chain A, Phosphorylated Insulin Receptor Tyrosine Kinase In Complex
With Peptide Substrate And Atp Analog
pdb|1GAG|A Chain A, Crystal Structure Of The Insulin Receptor Kinase In
Complex With A Bisubstrate Inhibitor
Length = 306
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 45/108 (41%), Gaps = 16/108 (14%)
Query: 723 YLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSL 782
++APE G T +D++SFGV EI S L E + N Q L
Sbjct: 198 WMAPESLKDGVFTTSSDMWSFGVVLWEITS---------------LAEQPYQGLSNEQVL 242
Query: 783 GLV-DPTLTEFNDKEALRVIGVALLCTQASPMMRPPMSRVVAMLAGDI 829
V D + D RV + +C Q +P MRP +V +L D+
Sbjct: 243 KFVMDGGYLDQPDNCPERVTDLMRMCWQFNPKMRPTFLEIVNLLKDDL 290
>pdb|3ETA|A Chain A, Kinase Domain Of Insulin Receptor Complexed With A Pyrrolo
Pyridine Inhibitor
pdb|3ETA|B Chain B, Kinase Domain Of Insulin Receptor Complexed With A Pyrrolo
Pyridine Inhibitor
Length = 317
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 45/108 (41%), Gaps = 16/108 (14%)
Query: 723 YLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSL 782
++APE G T +D++SFGV EI S L E + N Q L
Sbjct: 197 WMAPESLKDGVFTTSSDMWSFGVVLWEITS---------------LAEQPYQGLSNEQVL 241
Query: 783 GLV-DPTLTEFNDKEALRVIGVALLCTQASPMMRPPMSRVVAMLAGDI 829
V D + D RV + +C Q +P MRP +V +L D+
Sbjct: 242 KFVMDGGYLDQPDNCPERVTDLMRMCWQFNPKMRPTFLEIVNLLKDDL 289
>pdb|1P14|A Chain A, Crystal Structure Of A Catalytic-Loop Mutant Of The
Insulin Receptor Tyrosine Kinase
Length = 306
Score = 38.1 bits (87), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 45/108 (41%), Gaps = 16/108 (14%)
Query: 723 YLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSL 782
++APE G T +D++SFGV EI S L E + N Q L
Sbjct: 198 WMAPESLKDGVFTTSSDMWSFGVVLWEITS---------------LAEQPYQGLSNEQVL 242
Query: 783 GLV-DPTLTEFNDKEALRVIGVALLCTQASPMMRPPMSRVVAMLAGDI 829
V D + D RV + +C Q +P MRP +V +L D+
Sbjct: 243 KFVMDGGYLDQPDNCPERVTDLMRMCWQFNPNMRPTFLEIVNLLKDDL 290
>pdb|3EKK|A Chain A, Insulin Receptor Kinase Complexed With An Inhibitor
pdb|3EKN|A Chain A, Insulin Receptor Kinase Complexed With An Inhibitor
Length = 307
Score = 38.1 bits (87), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 45/108 (41%), Gaps = 16/108 (14%)
Query: 723 YLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSL 782
++APE G T +D++SFGV EI S L E + N Q L
Sbjct: 199 WMAPESLKDGVFTTSSDMWSFGVVLWEITS---------------LAEQPYQGLSNEQVL 243
Query: 783 GLV-DPTLTEFNDKEALRVIGVALLCTQASPMMRPPMSRVVAMLAGDI 829
V D + D RV + +C Q +P MRP +V +L D+
Sbjct: 244 KFVMDGGYLDQPDNCPERVTDLMRMCWQFNPNMRPTFLEIVNLLKDDL 291
>pdb|1RQQ|A Chain A, Crystal Structure Of The Insulin Receptor Kinase In
Complex With The Sh2 Domain Of Aps
pdb|1RQQ|B Chain B, Crystal Structure Of The Insulin Receptor Kinase In
Complex With The Sh2 Domain Of Aps
pdb|2AUH|A Chain A, Crystal Structure Of The Grb14 Bps Region In Complex With
The Insulin Receptor Tyrosine Kinase
pdb|2B4S|B Chain B, Crystal Structure Of A Complex Between Ptp1b And The
Insulin Receptor Tyrosine Kinase
pdb|2B4S|D Chain D, Crystal Structure Of A Complex Between Ptp1b And The
Insulin Receptor Tyrosine Kinase
pdb|3BU3|A Chain A, Crystal Structure Of The Insulin Receptor Kinase In
Complex With Irs2 Krlb Peptide
pdb|3BU5|A Chain A, Crystal Structure Of The Insulin Receptor Kinase In
Complex With Irs2 Krlb Peptide And Atp
pdb|3BU6|A Chain A, Crystal Structure Of The Insulin Receptor Kinase In
Complex With Irs2 Krlb Phosphopeptide
Length = 306
Score = 37.7 bits (86), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 45/108 (41%), Gaps = 16/108 (14%)
Query: 723 YLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSL 782
++APE G T +D++SFGV EI S L E + N Q L
Sbjct: 198 WMAPESLKDGVFTTSSDMWSFGVVLWEITS---------------LAEQPYQGLSNEQVL 242
Query: 783 GLV-DPTLTEFNDKEALRVIGVALLCTQASPMMRPPMSRVVAMLAGDI 829
V D + D RV + +C Q +P MRP +V +L D+
Sbjct: 243 KFVMDGGYLDQPDNCPERVTDLMRMCWQFNPNMRPTFLEIVNLLKDDL 290
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 37.0 bits (84), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 45/95 (47%)
Query: 113 NKKGVIPEELVTLQYLTFLKIDQNFFTGPLPSFIGNLSRLMLLSVAHNVFSGSVPRELGN 172
N+ ++P+EL ++LT + + N + N+++L+ L +++N PR
Sbjct: 41 NQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDG 100
Query: 173 LKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNS 207
LK L +LS N+ S +L+ L L + +
Sbjct: 101 LKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGA 135
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 44/97 (45%), Gaps = 6/97 (6%)
Query: 294 KNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNS 353
K+LT + L N I+ + L TL LS+N L PRT + SL L L N
Sbjct: 54 KHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGND 113
Query: 354 LSGTLPTQKSENLQNIDLSYNHLS-GPFPSWVTSNLQ 389
+S +P +L + +HL+ G P + N+Q
Sbjct: 114 IS-VVPEGAFNDLS----ALSHLAIGANPLYCDCNMQ 145
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 36.6 bits (83), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 68/180 (37%), Gaps = 30/180 (16%)
Query: 179 LSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDAPFTGKI 238
L +N S L KL LYLN + +L+N++TLW +D
Sbjct: 42 LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALP 101
Query: 239 PDFIGNWTKLKSLRFQGNSFQGPIPXXXXXXXXXXXXRISDIYNVSSSLDFVMSLKNLTD 298
L LR N + P R+ D SL LT
Sbjct: 102 IGVFDQLVNLAELRLDRNQLKSLPP------------RVFD------------SLTKLTY 137
Query: 299 LSL-RNALITGSIPSGI-GELQNLQTLDLSFNNLTGQIPRTLFN-IGSLNYLFLGNNSLS 355
LSL N L S+P G+ +L +L+ L L +NN ++P F+ + L L L NN L
Sbjct: 138 LSLGYNEL--QSLPKGVFDKLTSLKELRL-YNNQLKRVPEGAFDKLTELKTLKLDNNQLK 194
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 55/96 (57%), Gaps = 13/96 (13%)
Query: 290 VMSLKNLTDLSLRNALITG----SIPSGI-GELQNLQTLDLSFNNLTGQIPRTLFN-IGS 343
+ +LK LT+L+ ++TG S+P+G+ +L NL+ L L N L +P +F+ + +
Sbjct: 78 ISALKELTNLTY--LILTGNQLQSLPNGVFDKLTNLKELVLVENQLQS-LPDGVFDKLTN 134
Query: 344 LNYLFLGNNSLSGTLPT---QKSENLQNIDLSYNHL 376
L YL L +N L +LP K NL +DLSYN L
Sbjct: 135 LTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQL 169
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 57/127 (44%), Gaps = 10/127 (7%)
Query: 128 LTFLKIDQNFFTGPLPSFIGNLSRLMLLSVAHNVFSG-SVPRELGNLKELTVLSFGNNNF 186
L LKI N T P + NLS+L L + N S + ++L LK L V G+N
Sbjct: 223 LNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDINAVKDLTKLKXLNV---GSNQI 277
Query: 187 SGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDAPFTGKIPDFIGNWT 246
S + NL++L L+LN+ G E L N+ TL+ S T P + + +
Sbjct: 278 SDI--SVLNNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQNHITDIRP--LASLS 333
Query: 247 KLKSLRF 253
K S F
Sbjct: 334 KXDSADF 340
>pdb|3S95|A Chain A, Crystal Structure Of The Human Limk1 Kinase Domain In
Complex With Staurosporine
pdb|3S95|B Chain B, Crystal Structure Of The Human Limk1 Kinase Domain In
Complex With Staurosporine
Length = 310
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 708 PVYKKTQLMLSNFHGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSD 758
P KK ++ N + ++APE EK DVFSFG+ EII GR N+D
Sbjct: 174 PDRKKRYTVVGNPY-WMAPEMINGRSYDEKVDVFSFGIVLCEII-GRVNAD 222
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 49/96 (51%), Gaps = 5/96 (5%)
Query: 152 LMLLSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAG 211
+++L+++ N+ +GSV R L ++ VL NN ++P ++ +L L++L + S
Sbjct: 430 ILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRI-MSIPKDVTHLQALQELNVASNQLK 486
Query: 212 GEIPSTYAKLRNMQTLWASDAPFTGKIP--DFIGNW 245
+ +L ++Q +W D P+ P ++ W
Sbjct: 487 SVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEW 522
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 299 LSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQIPRTLFN-IGSLNYLFLGNNSLSGT 357
L L N I SIP + LQ LQ L+++ N L +P +F+ + SL Y++L +N T
Sbjct: 455 LDLHNNRIM-SIPKDVTHLQALQELNVASNQLKS-VPDGVFDRLTSLQYIWLHDNPWDCT 512
Query: 358 LP 359
P
Sbjct: 513 CP 514
>pdb|3DAK|A Chain A, Crystal Structure Of Domain-Swapped Osr1 Kinase Domain
pdb|3DAK|B Chain B, Crystal Structure Of Domain-Swapped Osr1 Kinase Domain
pdb|3DAK|C Chain C, Crystal Structure Of Domain-Swapped Osr1 Kinase Domain
pdb|3DAK|D Chain D, Crystal Structure Of Domain-Swapped Osr1 Kinase Domain
Length = 290
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 50/107 (46%), Gaps = 19/107 (17%)
Query: 723 YLAPEY--AMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQ 780
++APE +RG+ KAD++SFG+ A+E+ +G A M+ + L L +
Sbjct: 187 WMAPEVMEQVRGY-DFKADIWSFGITAIELATGAAPYHKYPPMKVLML-----TLQNDPP 240
Query: 781 SLGLVDPTLTEFNDKEALRVIGVAL-----LCTQASPMMRPPMSRVV 822
SL T DKE L+ G + LC Q P RP + ++
Sbjct: 241 SLE------TGVQDKEMLKKYGKSFRKMISLCLQKDPEKRPTAAELL 281
>pdb|2VWI|A Chain A, Structure Of The Osr1 Kinase, A Hypertension Drug Target
pdb|2VWI|B Chain B, Structure Of The Osr1 Kinase, A Hypertension Drug Target
pdb|2VWI|C Chain C, Structure Of The Osr1 Kinase, A Hypertension Drug Target
pdb|2VWI|D Chain D, Structure Of The Osr1 Kinase, A Hypertension Drug Target
Length = 303
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 50/107 (46%), Gaps = 19/107 (17%)
Query: 723 YLAPEY--AMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQ 780
++APE +RG+ KAD++SFG+ A+E+ +G A M+ + L L +
Sbjct: 192 WMAPEVMEQVRGY-DFKADIWSFGITAIELATGAAPYHKYPPMKVLML-----TLQNDPP 245
Query: 781 SLGLVDPTLTEFNDKEALRVIGVAL-----LCTQASPMMRPPMSRVV 822
SL T DKE L+ G + LC Q P RP + ++
Sbjct: 246 SLE------TGVQDKEMLKKYGKSFRKMISLCLQKDPEKRPTAAELL 286
>pdb|3GGF|A Chain A, Crystal Structure Of Human SerineTHREONINE-Protein Kinase
Mst4 In Complex With An Quinazolin
pdb|3GGF|B Chain B, Crystal Structure Of Human SerineTHREONINE-Protein Kinase
Mst4 In Complex With An Quinazolin
Length = 301
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Query: 700 KLGEGGYGPVYKKTQLMLSNFHG---YLAPEYAMRGHLTEKADVFSFGVAALEIISGRAN 756
KL + G TQ+ + F G ++APE + KAD++S G+ A+E+ G
Sbjct: 160 KLADFGVAGQLTDTQIKRNTFVGTPFWMAPEVIQQSAYDSKADIWSLGITAIELAKGEPP 219
Query: 757 SDNSLDMEKIYLL 769
+ + M ++L+
Sbjct: 220 NSDMHPMRVLFLI 232
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 67/241 (27%), Positives = 104/241 (43%), Gaps = 27/241 (11%)
Query: 122 LVTLQYLTFLKIDQNFFTGPLPSFIGNLSRLMLLSVAHNVFSG-SVPRELGNLKELTVLS 180
L +LQ L+F N T P + NL+ L L ++ N S SV +L NL+ L
Sbjct: 150 LTSLQQLSF---SSNQVTDLKP--LANLTTLERLDISSNKVSDISVLAKLTNLESLIA-- 202
Query: 181 FGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPS--TYAKLRNMQTLWASDAPFTGKI 238
NN S P +G L L++L LN G ++ T A L N+ L ++ +
Sbjct: 203 -TNNQISDITP--LGILTNLDELSLN----GNQLKDIGTLASLTNLTDLDLANNQISNLA 255
Query: 239 PDFIGNWTKLKSLRFQGNSFQGPIPXXXXXXXXXXXXRISDIYNVSSSLDFVMSLKNLTD 298
P + TKL L+ N P + + ++S + +LKNLT
Sbjct: 256 P--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISP----ISNLKNLTY 309
Query: 299 LSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTL 358
L+L I+ P + L LQ L +NN + +L N+ ++N+L G+N +S
Sbjct: 310 LTLYFNNISDISP--VSSLTKLQRL-FFYNNKVSDV-SSLANLTNINWLSAGHNQISDLT 365
Query: 359 P 359
P
Sbjct: 366 P 366
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 52/111 (46%), Gaps = 8/111 (7%)
Query: 313 GIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQKSENLQNIDLS 372
G+ L NL ++ S N LT P L N+ L + + NN ++ P NL + L
Sbjct: 58 GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLF 115
Query: 373 YNHLSGPFPSWVTSNL-QMNLVANNFTFDRSNISVFPGLHCLQR-NFPCNR 421
N ++ P +NL ++ L +N S+IS GL LQ+ +F N+
Sbjct: 116 NNQITDIDPLKNLTNLNRLELSSNTI----SDISALSGLTSLQQLSFSSNQ 162
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 57/112 (50%), Gaps = 10/112 (8%)
Query: 309 SIPSGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGN---NSLSGTLPTQKSEN 365
SIPSG+ +++LDLSFN +T L +L L L + N++ G +
Sbjct: 45 SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGD-AFYSLGS 101
Query: 366 LQNIDLSYNHLSGPFPSW---VTSNLQMNLVANNFTFDRSNISVFPGLHCLQ 414
L+++DLS NHLS SW ++S +NL+ N + S+FP L LQ
Sbjct: 102 LEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQ-TLGVTSLFPNLTNLQ 152
>pdb|3Q4Z|A Chain A, Structure Of Unphosphorylated Pak1 Kinase Domain
pdb|3Q4Z|B Chain B, Structure Of Unphosphorylated Pak1 Kinase Domain
Length = 306
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
Query: 695 FDPSNKLGEGGYGPVYKKTQLMLSNFHG---YLAPEYAMRGHLTEKADVFSFGVAALEII 751
D S KL + G+ Q S G ++APE R K D++S G+ A+E+I
Sbjct: 152 MDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMI 211
Query: 752 SGRANSDNSLDMEKIYLL 769
G N + +YL+
Sbjct: 212 EGEPPYLNENPLRALYLI 229
>pdb|1F3M|C Chain C, Crystal Structure Of Human SerineTHREONINE KINASE PAK1
pdb|1F3M|D Chain D, Crystal Structure Of Human SerineTHREONINE KINASE PAK1
pdb|1YHW|A Chain A, Crystal Structure Of Pak1 Kinase Domain With One Point
Mutations (K299r)
Length = 297
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
Query: 695 FDPSNKLGEGGYGPVYKKTQLMLSNFHG---YLAPEYAMRGHLTEKADVFSFGVAALEII 751
D S KL + G+ Q S G ++APE R K D++S G+ A+E+I
Sbjct: 151 MDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMI 210
Query: 752 SGRANSDNSLDMEKIYLL 769
G N + +YL+
Sbjct: 211 EGEPPYLNENPLRALYLI 228
>pdb|1YHV|A Chain A, Crystal Structure Of Pak1 Kinase Domain With Two Point
Mutations (K299r, T423e)
pdb|2HY8|1 Chain 1, Pak1 Complex With St2001
Length = 297
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
Query: 695 FDPSNKLGEGGYGPVYKKTQLMLSNFHG---YLAPEYAMRGHLTEKADVFSFGVAALEII 751
D S KL + G+ Q S G ++APE R K D++S G+ A+E+I
Sbjct: 151 MDGSVKLTDFGFCAQITPEQSKRSEMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMI 210
Query: 752 SGRANSDNSLDMEKIYLL 769
G N + +YL+
Sbjct: 211 EGEPPYLNENPLRALYLI 228
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 34.3 bits (77), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 57/112 (50%), Gaps = 10/112 (8%)
Query: 309 SIPSGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGN---NSLSGTLPTQKSEN 365
SIPSG+ +++LDLSFN +T L +L L L + N++ G +
Sbjct: 19 SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGD-AFYSLGS 75
Query: 366 LQNIDLSYNHLSGPFPSW---VTSNLQMNLVANNFTFDRSNISVFPGLHCLQ 414
L+++DLS NHLS SW ++S +NL+ N + S+FP L LQ
Sbjct: 76 LEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQ-TLGVTSLFPNLTNLQ 126
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 34.3 bits (77), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 67/241 (27%), Positives = 103/241 (42%), Gaps = 27/241 (11%)
Query: 122 LVTLQYLTFLKIDQNFFTGPLPSFIGNLSRLMLLSVAHNVFSG-SVPRELGNLKELTVLS 180
L +LQ L F N T P + NL+ L L ++ N S SV +L NL+ L
Sbjct: 150 LTSLQQLNF---SSNQVTDLKP--LANLTTLERLDISSNKVSDISVLAKLTNLESLIA-- 202
Query: 181 FGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPS--TYAKLRNMQTLWASDAPFTGKI 238
NN S P +G L L++L LN G ++ T A L N+ L ++ +
Sbjct: 203 -TNNQISDITP--LGILTNLDELSLN----GNQLKDIGTLASLTNLTDLDLANNQISNLA 255
Query: 239 PDFIGNWTKLKSLRFQGNSFQGPIPXXXXXXXXXXXXRISDIYNVSSSLDFVMSLKNLTD 298
P + TKL L+ N P + + ++S + +LKNLT
Sbjct: 256 P--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISP----ISNLKNLTY 309
Query: 299 LSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTL 358
L+L I+ P + L LQ L +NN + +L N+ ++N+L G+N +S
Sbjct: 310 LTLYFNNISDISP--VSSLTKLQRL-FFYNNKVSDV-SSLANLTNINWLSAGHNQISDLT 365
Query: 359 P 359
P
Sbjct: 366 P 366
Score = 32.7 bits (73), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 52/111 (46%), Gaps = 8/111 (7%)
Query: 313 GIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQKSENLQNIDLS 372
G+ L NL ++ S N LT P L N+ L + + NN ++ P NL + L
Sbjct: 58 GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLF 115
Query: 373 YNHLSGPFPSWVTSNL-QMNLVANNFTFDRSNISVFPGLHCLQR-NFPCNR 421
N ++ P +NL ++ L +N S+IS GL LQ+ NF N+
Sbjct: 116 NNQITDIDPLKNLTNLNRLELSSNTI----SDISALSGLTSLQQLNFSSNQ 162
Score = 29.6 bits (65), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 63/134 (47%), Gaps = 15/134 (11%)
Query: 286 SLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTL-DLSFNNLTGQIPRT--LFNIG 342
S+D V L NLT ++ N +T P L+NL L D+ NN QI L N+
Sbjct: 55 SIDGVEYLNNLTQINFSNNQLTDITP-----LKNLTKLVDILMNN--NQIADITPLANLT 107
Query: 343 SLNYLFLGNNSLSGTLPTQKSENLQNIDLSYNHLSGPFP-SWVTSNLQMNLVANNFTFDR 401
+L L L NN ++ P + NL ++LS N +S S +TS Q+N +N T
Sbjct: 108 NLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVT--- 164
Query: 402 SNISVFPGLHCLQR 415
++ L L+R
Sbjct: 165 -DLKPLANLTTLER 177
>pdb|3FXZ|A Chain A, Crystal Structure Of Pak1 Kinase Domain With Ruthenium
Complex Lambda-Fl172
pdb|3FY0|A Chain A, Crystal Structure Of Pak1 Kinase Domain With Ruthenium
Complex Dw1
pdb|4DAW|A Chain A, Crystal Structure Of Pak1 Kinase Domain With The Ruthenium
Phthalimide Complex
Length = 297
Score = 33.9 bits (76), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
Query: 695 FDPSNKLGEGGYGPVYKKTQLMLSNFHG---YLAPEYAMRGHLTEKADVFSFGVAALEII 751
D S KL + G+ Q S G ++APE R K D++S G+ A+E+I
Sbjct: 151 MDGSVKLTDFGFCAQITPEQSKRSXMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMI 210
Query: 752 SGRANSDNSLDMEKIYLL 769
G N + +YL+
Sbjct: 211 EGEPPYLNENPLRALYLI 228
>pdb|3Q52|A Chain A, Structure Of Phosphorylated Pak1 Kinase Domain
pdb|3Q53|A Chain A, Structure Of Phosphorylated Pak1 Kinase Domain In Complex
With Atp
Length = 306
Score = 33.9 bits (76), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
Query: 695 FDPSNKLGEGGYGPVYKKTQLMLSNFHG---YLAPEYAMRGHLTEKADVFSFGVAALEII 751
D S KL + G+ Q S G ++APE R K D++S G+ A+E+I
Sbjct: 152 MDGSVKLTDFGFCAQITPEQSKRSXMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMI 211
Query: 752 SGRANSDNSLDMEKIYLL 769
G N + +YL+
Sbjct: 212 EGEPPYLNENPLRALYLI 229
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 33.9 bits (76), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 67/241 (27%), Positives = 104/241 (43%), Gaps = 28/241 (11%)
Query: 122 LVTLQYLTFLKIDQNFFTGPLPSFIGNLSRLMLLSVAHNVFSG-SVPRELGNLKELTVLS 180
L +LQ L+F N T P + NL+ L L ++ N S SV +L NL+ L
Sbjct: 155 LTSLQQLSF----GNQVTDLKP--LANLTTLERLDISSNKVSDISVLAKLTNLESLIA-- 206
Query: 181 FGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPS--TYAKLRNMQTLWASDAPFTGKI 238
NN S P +G L L++L LN G ++ T A L N+ L ++ +
Sbjct: 207 -TNNQISDITP--LGILTNLDELSLN----GNQLKDIGTLASLTNLTDLDLANNQISNLA 259
Query: 239 PDFIGNWTKLKSLRFQGNSFQGPIPXXXXXXXXXXXXRISDIYNVSSSLDFVMSLKNLTD 298
P + TKL L+ N P + + ++S + +LKNLT
Sbjct: 260 P--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISP----ISNLKNLTY 313
Query: 299 LSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTL 358
L+L I+ P + L LQ L +NN + +L N+ ++N+L G+N +S
Sbjct: 314 LTLYFNNISDISP--VSSLTKLQRL-FFYNNKVSDV-SSLANLTNINWLSAGHNQISDLT 369
Query: 359 P 359
P
Sbjct: 370 P 370
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 48/104 (46%), Gaps = 7/104 (6%)
Query: 313 GIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQKSENLQNIDLS 372
G+ L NL ++ S N LT P L N+ L + + NN ++ P NL + L
Sbjct: 63 GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLF 120
Query: 373 YNHLSGPFPSWVTSNL-QMNLVANNFTFDRSNISVFPGLHCLQR 415
N ++ P +NL ++ L +N S+IS GL LQ+
Sbjct: 121 NNQITDIDPLKNLTNLNRLELSSNTI----SDISALSGLTSLQQ 160
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 33.9 bits (76), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 55/107 (51%), Gaps = 13/107 (12%)
Query: 302 RNALITGS------IPSGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLS 355
RN + GS IPSG+ E +++LDLS N +T L +L L L +N ++
Sbjct: 6 RNGICKGSSGSLNSIPSGLTE--AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN 63
Query: 356 GTLPTQKSE--NLQNIDLSYNHLSGPFPSW---VTSNLQMNLVANNF 397
S +L+++DLSYN+LS SW ++S +NL+ N +
Sbjct: 64 TIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPY 110
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 33.9 bits (76), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 54/105 (51%), Gaps = 13/105 (12%)
Query: 302 RNALITGS------IPSGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLS 355
RN + GS IPSG+ E +++LDLS N +T L +L L L +N ++
Sbjct: 32 RNGICKGSSGSLNSIPSGLTE--AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN 89
Query: 356 GTLPTQKSE--NLQNIDLSYNHLSGPFPSW---VTSNLQMNLVAN 395
S +L+++DLSYN+LS SW ++S +NL+ N
Sbjct: 90 TIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGN 134
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 33.5 bits (75), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 59/217 (27%), Positives = 94/217 (43%), Gaps = 22/217 (10%)
Query: 146 IGNLSRLMLLSVAHNVFSG-SVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLY 204
+ NL+ L L ++ N S SV +L NL+ L NN S P +G L L++L
Sbjct: 168 LANLTTLERLDISSNKVSDISVLAKLTNLESLIA---TNNQISDITP--LGILTNLDELS 222
Query: 205 LNSWGAGGEIPS--TYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPI 262
LN G ++ T A L N+ L ++ + P + TKL L+ N
Sbjct: 223 LN----GNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNIS 276
Query: 263 PXXXXXXXXXXXXRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQT 322
P + + ++S + +LKNLT L+L I+ P + L LQ
Sbjct: 277 PLAGLTALTNLELNENQLEDISP----ISNLKNLTYLTLYFNNISDISP--VSSLTKLQR 330
Query: 323 LDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLP 359
L +NN + +L N+ ++N+L G+N +S P
Sbjct: 331 L-FFYNNKVSDV-SSLANLTNINWLSAGHNQISDLTP 365
Score = 30.4 bits (67), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 50/107 (46%), Gaps = 8/107 (7%)
Query: 313 GIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQKSENLQNIDLS 372
G+ L NL ++ S N LT P L N+ L + + NN ++ P NL + L
Sbjct: 58 GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLF 115
Query: 373 YNHLSGPFPSWVTSNL-QMNLVANNFTFDRSNISVFPGLHCLQR-NF 417
N ++ P +NL ++ L +N S+IS GL LQ+ NF
Sbjct: 116 NNQITDIDPLKNLTNLNRLELSSNTI----SDISALSGLTSLQQLNF 158
>pdb|3CKW|A Chain A, Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3,
Stk24)
Length = 304
Score = 33.1 bits (74), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Query: 700 KLGEGGYGPVYKKTQLMLSNFHG---YLAPEYAMRGHLTEKADVFSFGVAALEIISGRAN 756
KL + G TQ+ + F G ++APE + KAD++S G+ A+E+ G
Sbjct: 144 KLADFGVAGQLTDTQIKRNTFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIELARGEPP 203
Query: 757 SDNSLDMEKIYLL 769
M+ ++L+
Sbjct: 204 HSELHPMKVLFLI 216
>pdb|3ZHP|C Chain C, Human Mst3 (stk24) In Complex With Mo25beta
pdb|3ZHP|D Chain D, Human Mst3 (stk24) In Complex With Mo25beta
Length = 294
Score = 33.1 bits (74), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Query: 700 KLGEGGYGPVYKKTQLMLSNFHG---YLAPEYAMRGHLTEKADVFSFGVAALEIISGRAN 756
KL + G TQ+ + F G ++APE + KAD++S G+ A+E+ G
Sbjct: 164 KLADFGVAGQLTDTQIKRNTFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIELARGEPP 223
Query: 757 SDNSLDMEKIYLL 769
M+ ++L+
Sbjct: 224 HSELHPMKVLFLI 236
>pdb|2XIK|A Chain A, Structure Of Human Ysk1 (Yeast Sps1-Ste20-Related Kinase
1)
Length = 294
Score = 33.1 bits (74), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 51/111 (45%), Gaps = 18/111 (16%)
Query: 671 EVLVGIDSKPNTFSYAELRSATQDFDPSN---------KLGEGGYGPVYKKTQLMLSNFH 721
E+L G+D + ++E R +D +N KL + G TQ+ + F
Sbjct: 124 EILKGLD-----YLHSE-RKIHRDIKAANVLLSEQGDVKLADFGVAGQLTDTQIKRNXFV 177
Query: 722 G---YLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLL 769
G ++APE + KAD++S G+ A+E+ G + + M ++L+
Sbjct: 178 GTPFWMAPEVIKQSAYDFKADIWSLGITAIELAKGEPPNSDLHPMRVLFLI 228
>pdb|3P1A|A Chain A, Structure Of Human Membrane-Associated Tyrosine- And
Threonine- Specific Cdc2-Inhibitory Kinase Myt1 (Pkmyt1)
Length = 311
Score = 33.1 bits (74), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 36/79 (45%), Gaps = 9/79 (11%)
Query: 673 LVGIDSKP-NTFSYAELRSATQDFDPSNKLGEGGYGPVYKKTQLMLSNFHGYLAPEYAMR 731
LV +D KP N F R DF +LG G G V + Y+APE ++
Sbjct: 178 LVHLDVKPANIFLGPRGRCKLGDFGLLVELGTAGAGEVQEGDPR-------YMAPEL-LQ 229
Query: 732 GHLTEKADVFSFGVAALEI 750
G ADVFS G+ LE+
Sbjct: 230 GSYGTAADVFSLGLTILEV 248
>pdb|3A7F|A Chain A, Human Mst3 Kinase
pdb|3A7G|A Chain A, Human Mst3 Kinase
pdb|3A7G|B Chain B, Human Mst3 Kinase
pdb|3A7H|A Chain A, Human Mst3 Kinase In Complex With Atp
pdb|3A7H|B Chain B, Human Mst3 Kinase In Complex With Atp
pdb|3A7I|A Chain A, Human Mst3 Kinase In Complex With Adenine
pdb|3A7J|A Chain A, Human Mst3 Kinase In Complex With Mnadp
Length = 303
Score = 33.1 bits (74), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Query: 700 KLGEGGYGPVYKKTQLMLSNFHG---YLAPEYAMRGHLTEKADVFSFGVAALEIISGRAN 756
KL + G TQ+ + F G ++APE + KAD++S G+ A+E+ G
Sbjct: 159 KLADFGVAGQLTDTQIKRNXFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIELARGEPP 218
Query: 757 SDNSLDMEKIYLL 769
M+ ++L+
Sbjct: 219 HSELHPMKVLFLI 231
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 33.1 bits (74), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 55/135 (40%), Gaps = 2/135 (1%)
Query: 125 LQYLTFLKIDQNFFTGPLPSFIGNLSRLMLLSVAHNVFSGSVPRELGNLKELTVLSFGNN 184
L LT+L +D N +L+ L L +A+N + +L +L L G N
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGN 117
Query: 185 NFSGTLPPEI-GNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDAPFTGKIPDFIG 243
+LP + L KL++L LN+ + KL N+QTL S
Sbjct: 118 QLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFD 176
Query: 244 NWTKLKSLRFQGNSF 258
KL+++ GN F
Sbjct: 177 RLGKLQTITLFGNQF 191
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 33.1 bits (74), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 55/135 (40%), Gaps = 2/135 (1%)
Query: 125 LQYLTFLKIDQNFFTGPLPSFIGNLSRLMLLSVAHNVFSGSVPRELGNLKELTVLSFGNN 184
L LT+L +D N +L+ L L +A+N + +L +L L G N
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGN 117
Query: 185 NFSGTLPPEI-GNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDAPFTGKIPDFIG 243
+LP + L KL++L LN+ + KL N+QTL S
Sbjct: 118 QLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFD 176
Query: 244 NWTKLKSLRFQGNSF 258
KL+++ GN F
Sbjct: 177 RLGKLQTITLFGNQF 191
>pdb|3CKX|A Chain A, Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3,
Stk24) In Complex With Staurosporine
Length = 304
Score = 32.7 bits (73), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Query: 700 KLGEGGYGPVYKKTQLMLSNFHG---YLAPEYAMRGHLTEKADVFSFGVAALEIISGRAN 756
KL + G TQ+ + F G ++APE + KAD++S G+ A+E+ G
Sbjct: 144 KLADFGVAGQLTDTQIKRNXFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIELARGEPP 203
Query: 757 SDNSLDMEKIYLL 769
M+ ++L+
Sbjct: 204 HSELHPMKVLFLI 216
>pdb|3D94|A Chain A, Crystal Structure Of The Insulin-Like Growth Factor-1
Receptor Kinase In Complex With Pqip
Length = 301
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 48/111 (43%), Gaps = 16/111 (14%)
Query: 723 YLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSL 782
+++PE G T +DV+SFGV EI + L E + N Q L
Sbjct: 193 WMSPESLKDGVFTTYSDVWSFGVVLWEIAT---------------LAEQPYQGLSNEQVL 237
Query: 783 GLV-DPTLTEFNDKEALRVIGVALLCTQASPMMRPPMSRVVAMLAGDIEVG 832
V + L + D ++ + +C Q +P MRP +++ + ++E G
Sbjct: 238 RFVMEGGLLDKPDNCPDMLLELMRMCWQYNPKMRPSFLEIISSIKEEMEPG 288
>pdb|2DQ7|X Chain X, Crystal Structure Of Fyn Kinase Domain Complexed With
Staurosporine
Length = 283
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Query: 723 YLAPEYAMRGHLTEKADVFSFGVAALEIIS-GRA 755
+ APE A+ G T K+DV+SFG+ E+++ GR
Sbjct: 172 WTAPEAALYGRFTIKSDVWSFGILLTELVTKGRV 205
>pdb|1K3A|A Chain A, Structure Of The Insulin-Like Growth Factor 1 Receptor
Kinase
Length = 299
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 59/144 (40%), Gaps = 30/144 (20%)
Query: 692 TQDFDPSNKLGEGGYG--PVYKKTQLMLSNFHGYLAPEYAMRGHLTEKADVFSFGVAALE 749
T+D ++ +GG G PV +++PE G T +DV+SFGV E
Sbjct: 170 TRDIXETDXXRKGGKGLLPVR------------WMSPESLKDGVFTTYSDVWSFGVVLWE 217
Query: 750 IISGRANSDNSLDMEKIYLLEWAWNLHENNQSLGLV-DPTLTEFNDKEALRVIGVALLCT 808
I + L E + N Q L V + L + D ++ + +C
Sbjct: 218 IAT---------------LAEQPYQGLSNEQVLRFVMEGGLLDKPDNCPDMLLELMRMCW 262
Query: 809 QASPMMRPPMSRVVAMLAGDIEVG 832
Q +P MRP +++ + ++E G
Sbjct: 263 QYNPKMRPSFLEIISSIKEEMEPG 286
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 46/104 (44%), Gaps = 12/104 (11%)
Query: 303 NALITGSIPSGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSG--TLPT 360
N+ +P EL+NL LDLS L P ++ SL L + +N+ T P
Sbjct: 479 NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY 538
Query: 361 QKSENLQNIDLSYNHLSGP-------FPSWVTSNLQMNLVANNF 397
+ +LQ +D S NH+ FPS + +NL N+F
Sbjct: 539 KCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAF---LNLTQNDF 579
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 65/186 (34%), Gaps = 37/186 (19%)
Query: 216 STYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPXXXXXXXXXXXX 275
S + LRN+ L S + L+ L+ GNSFQ
Sbjct: 439 SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF------------- 485
Query: 276 RISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQIP 335
+ DI+ L+NLT L L + P+ L +LQ L++S NN
Sbjct: 486 -LPDIFT---------ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF---FS 532
Query: 336 RTLFNIGSLNYLFLGNNSLSGTLPTQKSE-----------NLQNIDLSYNHLSGPFPSWV 384
F LN L + + SL+ + ++K E NL D + F W+
Sbjct: 533 LDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWI 592
Query: 385 TSNLQM 390
Q+
Sbjct: 593 KDQRQL 598
>pdb|2EVA|A Chain A, Structural Basis For The Interaction Of Tak1 Kinase With
Its Activating Protein Tab1
pdb|2YIY|A Chain A, Crystal Structure Of Compound 8 Bound To Tak1-Tab
Length = 307
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 722 GYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDN 759
++APE + +EK DVFS+G+ E+I+ R D
Sbjct: 168 AWMAPEVFEGSNYSEKCDVFSWGIILWEVITRRKPFDE 205
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 32.0 bits (71), Expect = 1.8, Method: Composition-based stats.
Identities = 47/189 (24%), Positives = 67/189 (35%), Gaps = 26/189 (13%)
Query: 174 KELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEI-PSTYAKLRNMQTLWASDA 232
+ LT+L +N + LA LEQL L+ + P+T+ L + TL
Sbjct: 55 RNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRC 114
Query: 233 PFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPXXXXXXXXXXXXRISDIYNVSSSLDFVMS 292
P L+ L Q N+ Q +P D
Sbjct: 115 GLQELGPGLFRGLAALQYLYLQDNALQA-LPD-----------------------DTFRD 150
Query: 293 LKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNN 352
L NLT L L I+ L +L L L N + P ++G L L+L N
Sbjct: 151 LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN 210
Query: 353 SLSGTLPTQ 361
+LS LPT+
Sbjct: 211 NLSA-LPTE 218
>pdb|4GS6|A Chain A, Irreversible Inhibition Of Tak1 Kinase By 5z-7-oxozeaenol
Length = 315
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 722 GYLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDN 759
++APE + +EK DVFS+G+ E+I+ R D
Sbjct: 169 AWMAPEVFEGSNYSEKCDVFSWGIILWEVITRRKPFDE 206
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 46/104 (44%), Gaps = 12/104 (11%)
Query: 303 NALITGSIPSGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSG--TLPT 360
N+ +P EL+NL LDLS L P ++ SL L + +N+ T P
Sbjct: 455 NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY 514
Query: 361 QKSENLQNIDLSYNHLSGP-------FPSWVTSNLQMNLVANNF 397
+ +LQ +D S NH+ FPS + +NL N+F
Sbjct: 515 KCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAF---LNLTQNDF 555
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 54/229 (23%), Positives = 87/229 (37%), Gaps = 42/229 (18%)
Query: 177 TVLSFGNNNFSGTLPPEIGNLAKLEQL-YLNSWGAGGEIPSTYAKLRNMQTLWASDAPFT 235
T L + + +F+G + N LEQL +L+ + + S ++ +++ L D T
Sbjct: 373 TSLKYLDLSFNGVITMS-SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT 431
Query: 236 GKIPDFIGNWTKLKSL---RFQGNSFQGPIPXXXXXXXXXXXXRISDIYNVSSSLDFVMS 292
F G + L SL + GNSFQ + DI+
Sbjct: 432 HTRVAFNGIFNGLSSLEVLKMAGNSFQENF--------------LPDIFT---------E 468
Query: 293 LKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNN 352
L+NLT L L + P+ L +LQ L++S NN F LN L + +
Sbjct: 469 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF---FSLDTFPYKCLNSLQVLDY 525
Query: 353 SLSGTLPTQKSE-----------NLQNIDLSYNHLSGPFPSWVTSNLQM 390
SL+ + ++K E NL D + F W+ Q+
Sbjct: 526 SLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQL 574
>pdb|3QQU|A Chain A, Cocrystal Structure Of Unphosphorylated Igf With
Pyrimidine 8
pdb|3QQU|B Chain B, Cocrystal Structure Of Unphosphorylated Igf With
Pyrimidine 8
pdb|3QQU|C Chain C, Cocrystal Structure Of Unphosphorylated Igf With
Pyrimidine 8
pdb|3QQU|D Chain D, Cocrystal Structure Of Unphosphorylated Igf With
Pyrimidine 8
Length = 301
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 47/111 (42%), Gaps = 16/111 (14%)
Query: 723 YLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSL 782
+++PE G T +DV+SFGV EI + L E + N Q L
Sbjct: 193 WMSPESLKDGVFTTYSDVWSFGVVLWEIAT---------------LAEQPYQGLSNEQVL 237
Query: 783 GLV-DPTLTEFNDKEALRVIGVALLCTQASPMMRPPMSRVVAMLAGDIEVG 832
V + L + D + + +C Q +P MRP +++ + ++E G
Sbjct: 238 RFVMEGGLLDKPDNCPDMLFELMRMCWQYNPKMRPSFLEIISSIKEEMEPG 288
>pdb|3LVP|A Chain A, Crystal Structure Of Bisphosphorylated Igf1-R Kinase
Domain (2p) In Complex With A Bis-Azaindole Inhibitor
pdb|3LVP|B Chain B, Crystal Structure Of Bisphosphorylated Igf1-R Kinase
Domain (2p) In Complex With A Bis-Azaindole Inhibitor
pdb|3LVP|C Chain C, Crystal Structure Of Bisphosphorylated Igf1-R Kinase
Domain (2p) In Complex With A Bis-Azaindole Inhibitor
pdb|3LVP|D Chain D, Crystal Structure Of Bisphosphorylated Igf1-R Kinase
Domain (2p) In Complex With A Bis-Azaindole Inhibitor
Length = 336
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 47/111 (42%), Gaps = 16/111 (14%)
Query: 723 YLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSL 782
+++PE G T +DV+SFGV EI + L E + N Q L
Sbjct: 228 WMSPESLKDGVFTTYSDVWSFGVVLWEIAT---------------LAEQPYQGLSNEQVL 272
Query: 783 GLV-DPTLTEFNDKEALRVIGVALLCTQASPMMRPPMSRVVAMLAGDIEVG 832
V + L + D + + +C Q +P MRP +++ + ++E G
Sbjct: 273 RFVMEGGLLDKPDNCPDMLFELMRMCWQYNPKMRPSFLEIISSIKEEMEPG 323
>pdb|1JQH|A Chain A, Igf-1 Receptor Kinase Domain
pdb|1JQH|B Chain B, Igf-1 Receptor Kinase Domain
pdb|1JQH|C Chain C, Igf-1 Receptor Kinase Domain
Length = 308
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 47/111 (42%), Gaps = 16/111 (14%)
Query: 723 YLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSL 782
+++PE G T +DV+SFGV EI + L E + N Q L
Sbjct: 200 WMSPESLKDGVFTTYSDVWSFGVVLWEIAT---------------LAEQPYQGLSNEQVL 244
Query: 783 GLV-DPTLTEFNDKEALRVIGVALLCTQASPMMRPPMSRVVAMLAGDIEVG 832
V + L + D + + +C Q +P MRP +++ + ++E G
Sbjct: 245 RFVMEGGLLDKPDNCPDMLFELMRMCWQYNPKMRPSFLEIISSIKEEMEPG 295
>pdb|1M7N|A Chain A, Crystal Structure Of Unactivated Apo Insulin-Like Growth
Factor-1 Receptor Kinase Domain
pdb|1M7N|B Chain B, Crystal Structure Of Unactivated Apo Insulin-Like Growth
Factor-1 Receptor Kinase Domain
Length = 322
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 47/111 (42%), Gaps = 16/111 (14%)
Query: 723 YLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSL 782
+++PE G T +DV+SFGV EI + L E + N Q L
Sbjct: 206 WMSPESLKDGVFTTYSDVWSFGVVLWEIAT---------------LAEQPYQGLSNEQVL 250
Query: 783 GLV-DPTLTEFNDKEALRVIGVALLCTQASPMMRPPMSRVVAMLAGDIEVG 832
V + L + D + + +C Q +P MRP +++ + ++E G
Sbjct: 251 RFVMEGGLLDKPDNCPDMLFELMRMCWQYNPKMRPSFLEIISSIKEEMEPG 301
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 37/62 (59%), Gaps = 4/62 (6%)
Query: 293 LKNLTDLSLRNALITGSIPSGI-GELQNLQTLDLSFNNLTGQIPRTLF-NIGSLNYLFLG 350
L NL L + +T +IP+G+ +L L LDL+ N+L IPR F N+ SL +++L
Sbjct: 56 LVNLQQLYFNSNKLT-AIPTGVFDKLTQLTQLDLNDNHLKS-IPRGAFDNLKSLTHIYLY 113
Query: 351 NN 352
NN
Sbjct: 114 NN 115
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 31.6 bits (70), Expect = 2.1, Method: Composition-based stats.
Identities = 47/189 (24%), Positives = 67/189 (35%), Gaps = 26/189 (13%)
Query: 174 KELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEI-PSTYAKLRNMQTLWASDA 232
+ LT+L +N + LA LEQL L+ + P+T+ L + TL
Sbjct: 56 RNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRC 115
Query: 233 PFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPXXXXXXXXXXXXRISDIYNVSSSLDFVMS 292
P L+ L Q N+ Q +P D
Sbjct: 116 GLQELGPGLFRGLAALQYLYLQDNALQA-LPD-----------------------DTFRD 151
Query: 293 LKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNN 352
L NLT L L I+ L +L L L N + P ++G L L+L N
Sbjct: 152 LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN 211
Query: 353 SLSGTLPTQ 361
+LS LPT+
Sbjct: 212 NLSA-LPTE 219
>pdb|1P4O|A Chain A, Structure Of Apo Unactivated Igf-1r Kinase Domain At 1.5a
Resolution.
pdb|1P4O|B Chain B, Structure Of Apo Unactivated Igf-1r Kinase Domain At 1.5a
Resolution
Length = 322
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 47/111 (42%), Gaps = 16/111 (14%)
Query: 723 YLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSL 782
+++PE G T +DV+SFGV EI + L E + N Q L
Sbjct: 206 WMSPESLKDGVFTTYSDVWSFGVVLWEIAT---------------LAEQPYQGLSNEQVL 250
Query: 783 GLV-DPTLTEFNDKEALRVIGVALLCTQASPMMRPPMSRVVAMLAGDIEVG 832
V + L + D + + +C Q +P MRP +++ + ++E G
Sbjct: 251 RFVMEGGLLDKPDNCPDMLFELMRMCWQYNPKMRPSFLEIISSIKEEMEPG 301
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 54/96 (56%), Gaps = 13/96 (13%)
Query: 290 VMSLKNLTDLSLRNALITG----SIPSGI-GELQNLQTLDLSFNNLTGQIPRTLFN-IGS 343
+ +LK LT+L+ ++TG S+P+G+ +L NL+ L L N L +P +F+ + +
Sbjct: 78 ISALKELTNLTY--LILTGNQLQSLPNGVFDKLTNLKELVLVENQLQS-LPDGVFDKLTN 134
Query: 344 LNYLFLGNNSLSGTLPT---QKSENLQNIDLSYNHL 376
L YL+L +N L +LP K NL +DL N L
Sbjct: 135 LTYLYLYHNQLQ-SLPKGVFDKLTNLTRLDLDNNQL 169
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 44/97 (45%), Gaps = 12/97 (12%)
Query: 310 IPSGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSG--TLPTQKSENLQ 367
+P EL+NL LDLS L P ++ SL L + +N+ T P + +LQ
Sbjct: 167 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQ 226
Query: 368 NIDLSYNHLSGP-------FPSWVTSNLQMNLVANNF 397
+D S NH+ FPS + +NL N+F
Sbjct: 227 VLDYSLNHIMTSKKQELQHFPSSLAF---LNLTQNDF 260
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 54/229 (23%), Positives = 87/229 (37%), Gaps = 42/229 (18%)
Query: 177 TVLSFGNNNFSGTLPPEIGNLAKLEQL-YLNSWGAGGEIPSTYAKLRNMQTLWASDAPFT 235
T L + + +F+G + N LEQL +L+ + + S ++ +++ L D T
Sbjct: 78 TSLKYLDLSFNGVITMS-SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT 136
Query: 236 GKIPDFIGNWTKLKSL---RFQGNSFQGPIPXXXXXXXXXXXXRISDIYNVSSSLDFVMS 292
F G + L SL + GNSFQ + DI+
Sbjct: 137 HTRVAFNGIFNGLSSLEVLKMAGNSFQENF--------------LPDIFT---------E 173
Query: 293 LKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNN 352
L+NLT L L + P+ L +LQ L++S NN F LN L + +
Sbjct: 174 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF---FSLDTFPYKCLNSLQVLDY 230
Query: 353 SLSGTLPTQKSE-----------NLQNIDLSYNHLSGPFPSWVTSNLQM 390
SL+ + ++K E NL D + F W+ Q+
Sbjct: 231 SLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQL 279
>pdb|2ZM3|A Chain A, Complex Structure Of Insulin-Like Growth Factor Receptor
And Isoquinolinedione Inhibitor
pdb|2ZM3|B Chain B, Complex Structure Of Insulin-Like Growth Factor Receptor
And Isoquinolinedione Inhibitor
pdb|2ZM3|C Chain C, Complex Structure Of Insulin-Like Growth Factor Receptor
And Isoquinolinedione Inhibitor
pdb|2ZM3|D Chain D, Complex Structure Of Insulin-Like Growth Factor Receptor
And Isoquinolinedione Inhibitor
pdb|3F5P|A Chain A, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|B Chain B, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|C Chain C, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|D Chain D, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|E Chain E, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|F Chain F, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|G Chain G, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|H Chain H, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|I Chain I, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|J Chain J, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|K Chain K, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|M Chain M, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|L Chain L, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|R Chain R, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|S Chain S, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|T Chain T, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
Length = 308
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 47/111 (42%), Gaps = 16/111 (14%)
Query: 723 YLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSL 782
+++PE G T +DV+SFGV EI + L E + N Q L
Sbjct: 200 WMSPESLKDGVFTTYSDVWSFGVVLWEIAT---------------LAEQPYQGLSNEQVL 244
Query: 783 GLV-DPTLTEFNDKEALRVIGVALLCTQASPMMRPPMSRVVAMLAGDIEVG 832
V + L + D + + +C Q +P MRP +++ + ++E G
Sbjct: 245 RFVMEGGLLDKPDNCPDMLFELMRMCWQYNPKMRPSFLEIISSIKEEMEPG 295
>pdb|3O23|A Chain A, Human Unphosphorylated Igf1-R Kinase Domain In Complex
With An Hydantoin Inhibitor
Length = 305
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 47/111 (42%), Gaps = 16/111 (14%)
Query: 723 YLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSL 782
+++PE G T +DV+SFGV EI + L E + N Q L
Sbjct: 197 WMSPESLKDGVFTTYSDVWSFGVVLWEIAT---------------LAEQPYQGLSNEQVL 241
Query: 783 GLV-DPTLTEFNDKEALRVIGVALLCTQASPMMRPPMSRVVAMLAGDIEVG 832
V + L + D + + +C Q +P MRP +++ + ++E G
Sbjct: 242 RFVMEGGLLDKPDNCPDMLFELMRMCWQYNPKMRPSFLEIISSIKEEMEPG 292
>pdb|3U4W|A Chain A, Src In Complex With Dna-Templated Macrocyclic Inhibitor
Mc4b
pdb|3U51|A Chain A, Src In Complex With Dna-Templated Macrocyclic Inhibitor
Mc1
pdb|3U51|B Chain B, Src In Complex With Dna-Templated Macrocyclic Inhibitor
Mc1
Length = 275
Score = 31.6 bits (70), Expect = 2.3, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 723 YLAPEYAMRGHLTEKADVFSFGVAALEIIS-GR 754
+ APE A+ G T K+DV+SFG+ E+ + GR
Sbjct: 170 WTAPEAALYGRFTIKSDVWSFGILLTELTTKGR 202
>pdb|3SVV|A Chain A, Crystal Structure Of T338c C-Src Covalently Bound To
Vinylsulfonamide- Pyrazolopyrimidine 9
pdb|3SVV|B Chain B, Crystal Structure Of T338c C-Src Covalently Bound To
Vinylsulfonamide- Pyrazolopyrimidine 9
Length = 286
Score = 31.6 bits (70), Expect = 2.3, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 723 YLAPEYAMRGHLTEKADVFSFGVAALEIIS-GR 754
+ APE A+ G T K+DV+SFG+ E+ + GR
Sbjct: 181 WTAPEAALYGRFTIKSDVWSFGILLTELTTKGR 213
>pdb|3OEZ|A Chain A, Crystal Structure Of The L317i Mutant Of The Chicken C-Src
Tyrosine Kinase Domain Complexed With Imatinib
pdb|3OEZ|B Chain B, Crystal Structure Of The L317i Mutant Of The Chicken C-Src
Tyrosine Kinase Domain Complexed With Imatinib
pdb|3OF0|A Chain A, Crystal Structure Of The L317i Mutant Of The Chicken C-Src
Tyrosine Kinase Domain
pdb|3OF0|B Chain B, Crystal Structure Of The L317i Mutant Of The Chicken C-Src
Tyrosine Kinase Domain
pdb|3QLF|A Chain A, Crystal Structure Of The L317i Mutant Of The C-Src
Tyrosine Kinase Domain Complexed With Pyrazolopyrimidine
5
pdb|3QLF|B Chain B, Crystal Structure Of The L317i Mutant Of The C-Src
Tyrosine Kinase Domain Complexed With Pyrazolopyrimidine
5
pdb|3QLG|A Chain A, Crystal Structure Of The L317i Mutant Of The C-Src
Tyrosine Kinase Domain Complexed With Dasatinib
pdb|3QLG|B Chain B, Crystal Structure Of The L317i Mutant Of The C-Src
Tyrosine Kinase Domain Complexed With Dasatinib
Length = 286
Score = 31.6 bits (70), Expect = 2.3, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 723 YLAPEYAMRGHLTEKADVFSFGVAALEIIS-GR 754
+ APE A+ G T K+DV+SFG+ E+ + GR
Sbjct: 181 WTAPEAALYGRFTIKSDVWSFGILLTELTTKGR 213
>pdb|3LW0|A Chain A, Igf-1rk In Complex With Ligand Msc1609119a-1
pdb|3LW0|B Chain B, Igf-1rk In Complex With Ligand Msc1609119a-1
pdb|3LW0|C Chain C, Igf-1rk In Complex With Ligand Msc1609119a-1
pdb|3LW0|D Chain D, Igf-1rk In Complex With Ligand Msc1609119a-1
Length = 304
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 47/111 (42%), Gaps = 16/111 (14%)
Query: 723 YLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSL 782
+++PE G T +DV+SFGV EI + L E + N Q L
Sbjct: 196 WMSPESLKDGVFTTYSDVWSFGVVLWEIAT---------------LAEQPYQGLSNEQVL 240
Query: 783 GLV-DPTLTEFNDKEALRVIGVALLCTQASPMMRPPMSRVVAMLAGDIEVG 832
V + L + D + + +C Q +P MRP +++ + ++E G
Sbjct: 241 RFVMEGGLLDKPDNCPDMLFELMRMCWQYNPKMRPSFLEIISSIKEEMEPG 291
>pdb|3GEQ|A Chain A, Structural Basis For The Chemical Rescue Of Src Kinase
Activity
pdb|3GEQ|B Chain B, Structural Basis For The Chemical Rescue Of Src Kinase
Activity
Length = 286
Score = 31.6 bits (70), Expect = 2.3, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 723 YLAPEYAMRGHLTEKADVFSFGVAALEIIS-GR 754
+ APE A+ G T K+DV+SFG+ E+ + GR
Sbjct: 181 WTAPEAALYGRFTIKSDVWSFGILLTELTTKGR 213
>pdb|3G6H|A Chain A, Src Thr338ile Inhibited In The Dfg-Asp-Out Conformation
pdb|3G6H|B Chain B, Src Thr338ile Inhibited In The Dfg-Asp-Out Conformation
Length = 286
Score = 31.6 bits (70), Expect = 2.3, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 723 YLAPEYAMRGHLTEKADVFSFGVAALEIIS-GR 754
+ APE A+ G T K+DV+SFG+ E+ + GR
Sbjct: 181 WTAPEAALYGRFTIKSDVWSFGILLTELTTKGR 213
>pdb|3DQW|A Chain A, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs
pdb|3DQW|B Chain B, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs
pdb|3DQW|C Chain C, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs
pdb|3DQW|D Chain D, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs
Length = 286
Score = 31.6 bits (70), Expect = 2.3, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 723 YLAPEYAMRGHLTEKADVFSFGVAALEIIS-GR 754
+ APE A+ G T K+DV+SFG+ E+ + GR
Sbjct: 181 WTAPEAALYGRFTIKSDVWSFGILLTELTTKGR 213
>pdb|3D7U|B Chain B, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
pdb|3D7U|D Chain D, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
Length = 277
Score = 31.6 bits (70), Expect = 2.3, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 723 YLAPEYAMRGHLTEKADVFSFGVAALEIIS-GR 754
+ APE A+ G T K+DV+SFG+ E+ + GR
Sbjct: 172 WTAPEAALYGRFTIKSDVWSFGILLTELTTKGR 204
>pdb|2QQ7|A Chain A, Crystal Structure Of Drug Resistant Src Kinase Domain With
Irreversible Inhibitor
pdb|2QQ7|B Chain B, Crystal Structure Of Drug Resistant Src Kinase Domain With
Irreversible Inhibitor
pdb|2QI8|A Chain A, Crystal Structure Of Drug Resistant Src Kinase Domain
pdb|2QI8|B Chain B, Crystal Structure Of Drug Resistant Src Kinase Domain
pdb|3F3W|A Chain A, Drug Resistant Csrc Kinase Domain In Complex With
Inhibitor Rl45 (Type Ii)
pdb|3F3W|B Chain B, Drug Resistant Csrc Kinase Domain In Complex With
Inhibitor Rl45 (Type Ii)
pdb|3LOK|A Chain A, Drug Resistant Csrc Kinase Domain In Complex With Covalent
Inhibitor Pd168393
pdb|3LOK|B Chain B, Drug Resistant Csrc Kinase Domain In Complex With Covalent
Inhibitor Pd168393
Length = 286
Score = 31.6 bits (70), Expect = 2.3, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 723 YLAPEYAMRGHLTEKADVFSFGVAALEIIS-GR 754
+ APE A+ G T K+DV+SFG+ E+ + GR
Sbjct: 181 WTAPEAALYGRFTIKSDVWSFGILLTELTTKGR 213
>pdb|2OIQ|A Chain A, Crystal Structure Of Chicken C-Src Kinase Domain In
Complex With The Cancer Drug Imatinib.
pdb|2OIQ|B Chain B, Crystal Structure Of Chicken C-Src Kinase Domain In
Complex With The Cancer Drug Imatinib.
pdb|3D7T|B Chain B, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
pdb|3DQX|A Chain A, Chicken C-Src Kinase Domain In Complex With Atpgs
pdb|3DQX|B Chain B, Chicken C-Src Kinase Domain In Complex With Atpgs
pdb|3EN4|A Chain A, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp121, A Multitargeted
Kinase Inhibitor
pdb|3EN4|B Chain B, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp121, A Multitargeted
Kinase Inhibitor
pdb|3EN5|A Chain A, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp494, A Multitargeted
Kinase Inhibitor
pdb|3EN5|B Chain B, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp494, A Multitargeted
Kinase Inhibitor
pdb|3EN6|A Chain A, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp102, A Multitargeted
Kinase Inhibitor
pdb|3EN6|B Chain B, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp102, A Multitargeted
Kinase Inhibitor
pdb|3EN7|A Chain A, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With S1, A Multitargeted Kinase
Inhibitor
pdb|3EN7|B Chain B, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With S1, A Multitargeted Kinase
Inhibitor
pdb|3EL7|A Chain A, Crystal Structure Of C-Src In Complex With
Pyrazolopyrimidine 3
pdb|3EL8|A Chain A, Crystal Structure Of C-Src In Complex With
Pyrazolopyrimidine 5
pdb|3EL8|B Chain B, Crystal Structure Of C-Src In Complex With
Pyrazolopyrimidine 5
pdb|3F6X|A Chain A, C-Src Kinase Domain In Complex With Small Molecule
Inhibitor
pdb|3F6X|B Chain B, C-Src Kinase Domain In Complex With Small Molecule
Inhibitor
pdb|3F6X|C Chain C, C-Src Kinase Domain In Complex With Small Molecule
Inhibitor
pdb|3F6X|D Chain D, C-Src Kinase Domain In Complex With Small Molecule
Inhibitor
pdb|3G6G|A Chain A, Equally Potent Inhibition Of C-Src And Abl By Compounds
That Recognize Inactive Kinase Conformations
pdb|3G6G|B Chain B, Equally Potent Inhibition Of C-Src And Abl By Compounds
That Recognize Inactive Kinase Conformations
pdb|4AGW|A Chain A, Discovery Of A Small Molecule Type Ii Inhibitor Of Wild-
Type And Gatekeeper Mutants Of Bcr-Abl, Pdgfralpha, Kit,
And Src Kinases
pdb|4AGW|B Chain B, Discovery Of A Small Molecule Type Ii Inhibitor Of Wild-
Type And Gatekeeper Mutants Of Bcr-Abl, Pdgfralpha, Kit,
And Src Kinases
pdb|3UQF|A Chain A, C-Src Kinase Domain In Complex With Bki Rm-1-89
pdb|3UQF|B Chain B, C-Src Kinase Domain In Complex With Bki Rm-1-89
pdb|3UQG|A Chain A, C-Src Kinase Domain In Complex With Bumpless Bki Analog
Uw1243
pdb|3UQG|B Chain B, C-Src Kinase Domain In Complex With Bumpless Bki Analog
Uw1243
pdb|4DGG|A Chain A, C-Src Kinase Domain In Complex With Rm-1-176
pdb|4DGG|B Chain B, C-Src Kinase Domain In Complex With Rm-1-176
Length = 286
Score = 31.6 bits (70), Expect = 2.3, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 723 YLAPEYAMRGHLTEKADVFSFGVAALEIIS-GR 754
+ APE A+ G T K+DV+SFG+ E+ + GR
Sbjct: 181 WTAPEAALYGRFTIKSDVWSFGILLTELTTKGR 213
>pdb|2HWO|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With
Covalent Inhibitor
pdb|2HWO|B Chain B, Crystal Structure Of Src Kinase Domain In Complex With
Covalent Inhibitor
pdb|2HWP|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With
Covalent Inhibitor Pd168393
pdb|2HWP|B Chain B, Crystal Structure Of Src Kinase Domain In Complex With
Covalent Inhibitor Pd168393
pdb|2QLQ|A Chain A, Crystal Structure Of Src Kinase Domain With Covalent
Inhibitor Rl3
pdb|2QLQ|B Chain B, Crystal Structure Of Src Kinase Domain With Covalent
Inhibitor Rl3
pdb|3F3T|A Chain A, Kinase Domain Of Csrc In Complex With Inhibitor Rl38 (Type
Iii)
pdb|3F3T|B Chain B, Kinase Domain Of Csrc In Complex With Inhibitor Rl38 (Type
Iii)
pdb|3F3U|A Chain A, Kinase Domain Of Csrc In Complex With Inhibitor Rl37 (Type
Iii)
pdb|3F3U|B Chain B, Kinase Domain Of Csrc In Complex With Inhibitor Rl37 (Type
Iii)
pdb|3F3V|A Chain A, Kinase Domain Of Csrc In Complex With Inhibitor Rl45 (Type
Ii)
pdb|3F3V|B Chain B, Kinase Domain Of Csrc In Complex With Inhibitor Rl45 (Type
Ii)
pdb|3G5D|A Chain A, Kinase Domain Of Csrc In Complex With Dasatinib
pdb|3G5D|B Chain B, Kinase Domain Of Csrc In Complex With Dasatinib
pdb|3TZ7|A Chain A, Kinase Domain Of Csrc In Complex With Rl103
pdb|3TZ7|B Chain B, Kinase Domain Of Csrc In Complex With Rl103
pdb|3TZ8|A Chain A, Kinase Domain Of Csrc In Complex With Rl104
pdb|3TZ8|B Chain B, Kinase Domain Of Csrc In Complex With Rl104
pdb|3TZ9|A Chain A, Kinase Domain Of Csrc In Complex With Rl130
pdb|3TZ9|B Chain B, Kinase Domain Of Csrc In Complex With Rl130
Length = 286
Score = 31.6 bits (70), Expect = 2.3, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 723 YLAPEYAMRGHLTEKADVFSFGVAALEIIS-GR 754
+ APE A+ G T K+DV+SFG+ E+ + GR
Sbjct: 181 WTAPEAALYGRFTIKSDVWSFGILLTELTTKGR 213
>pdb|2BDF|A Chain A, Src Kinase In Complex With Inhibitor Ap23451
pdb|2BDF|B Chain B, Src Kinase In Complex With Inhibitor Ap23451
pdb|2BDJ|A Chain A, Src Kinase In Complex With Inhibitor Ap23464
Length = 279
Score = 31.6 bits (70), Expect = 2.3, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 723 YLAPEYAMRGHLTEKADVFSFGVAALEIIS-GR 754
+ APE A+ G T K+DV+SFG+ E+ + GR
Sbjct: 174 WTAPEAALYGRFTIKSDVWSFGILLTELTTKGR 206
>pdb|1YI6|A Chain A, C-Term Tail Segment Of Human Tyrosine Kinase (258-533)
pdb|1YI6|B Chain B, C-Term Tail Segment Of Human Tyrosine Kinase (258-533)
Length = 276
Score = 31.2 bits (69), Expect = 2.4, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 723 YLAPEYAMRGHLTEKADVFSFGVAALEIIS-GR 754
+ APE A+ G T K+DV+SFG+ E+ + GR
Sbjct: 171 WTAPEAALYGRFTIKSDVWSFGILLTELTTKGR 203
>pdb|1YOL|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With
Cgp77675
pdb|1YOL|B Chain B, Crystal Structure Of Src Kinase Domain In Complex With
Cgp77675
Length = 283
Score = 31.2 bits (69), Expect = 2.4, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 723 YLAPEYAMRGHLTEKADVFSFGVAALEIIS-GR 754
+ APE A+ G T K+DV+SFG+ E+ + GR
Sbjct: 178 WTAPEAALYGRFTIKSDVWSFGILLTELTTKGR 210
>pdb|1YOJ|A Chain A, Crystal Structure Of Src Kinase Domain
pdb|1YOJ|B Chain B, Crystal Structure Of Src Kinase Domain
pdb|1YOM|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With
Purvalanol A
pdb|1YOM|B Chain B, Crystal Structure Of Src Kinase Domain In Complex With
Purvalanol A
Length = 283
Score = 31.2 bits (69), Expect = 2.4, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 723 YLAPEYAMRGHLTEKADVFSFGVAALEIIS 752
+ APE A+ G T K+DV+SFG+ E+ +
Sbjct: 178 WTAPEAALYGRFTIKSDVWSFGILLTELTT 207
>pdb|2OJ9|A Chain A, Structure Of Igf-1r Kinase Domain Complexed With A
Benzimidazole Inhibitor
pdb|3NW5|A Chain A, Crystal Structure Of Insulin-Like Growth Factor 1 Receptor
(Igf-1r-Wt) Complex With A Carbon-Linked Proline
Isostere Inhibitor (11b)
pdb|3NW6|A Chain A, Crystal Structure Of Insulin-Like Growth Factor 1 Receptor
(Igf-1r-Wt) Complex With A Carbon-Linked Proline
Isostere Inhibitor (11a)
pdb|3NW7|A Chain A, Crystal Structure Of Insulin-Like Growth Factor 1 Receptor
(Igf-1r-Wt) Complex With A Carbon-Linked Proline
Isostere Inhibitor (34)
Length = 307
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 47/111 (42%), Gaps = 16/111 (14%)
Query: 723 YLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSL 782
+++PE G T +DV+SFGV EI + L E + N Q L
Sbjct: 199 WMSPESLKDGVFTTYSDVWSFGVVLWEIAT---------------LAEQPYQGLSNEQVL 243
Query: 783 GLV-DPTLTEFNDKEALRVIGVALLCTQASPMMRPPMSRVVAMLAGDIEVG 832
V + L + D + + +C Q +P MRP +++ + ++E G
Sbjct: 244 RFVMEGGLLDKPDNCPDMLFELMRMCWQYNPKMRPSFLEIISSIKEEMEPG 294
>pdb|3I81|A Chain A, Crystal Structure Of Insulin-Like Growth Factor 1 Receptor
(Igf-1r-Wt) Complex With Bms-754807
[1-(4-((5-Cyclopropyl-
1h-Pyrazol-3-Yl)amino)pyrrolo[2,1-F][1,2,
4]triazin-2-Yl)-N-
(6-Fluoro-3-Pyridinyl)-2-Methyl-L-Prolinamide]
Length = 315
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 47/111 (42%), Gaps = 16/111 (14%)
Query: 723 YLAPEYAMRGHLTEKADVFSFGVAALEIISGRANSDNSLDMEKIYLLEWAWNLHENNQSL 782
+++PE G T +DV+SFGV EI + L E + N Q L
Sbjct: 199 WMSPESLKDGVFTTYSDVWSFGVVLWEIAT---------------LAEQPYQGLSNEQVL 243
Query: 783 GLV-DPTLTEFNDKEALRVIGVALLCTQASPMMRPPMSRVVAMLAGDIEVG 832
V + L + D + + +C Q +P MRP +++ + ++E G
Sbjct: 244 RFVMEGGLLDKPDNCPDMLFELMRMCWQYNPKMRPSFLEIISSIKEEMEPG 294
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 66/177 (37%), Gaps = 32/177 (18%)
Query: 205 LNSWGAGGEIPSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPX 264
L+++G G L N+ L D T P + N TK+ L GN +
Sbjct: 46 LSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK----- 98
Query: 265 XXXXXXXXXXXRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLD 324
NVS+ + L+++ L L + IT P + L NLQ L
Sbjct: 99 -----------------NVSA----IAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLY 135
Query: 325 LSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQKSENLQNIDLSYNHLSGPFP 381
L N +T P L + +L YL +GN +S P L + N +S P
Sbjct: 136 LDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP 190
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 62/254 (24%), Positives = 100/254 (39%), Gaps = 38/254 (14%)
Query: 149 LSRLMLLSVAHNVFSGS--VPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLN 206
L L L ++H+ S +L NL+ L L+ N G +LE L +
Sbjct: 348 LENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVA 407
Query: 207 SWGAGGEIP-STYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQ-GPIPX 264
+ P S + L ++ L S + L+ L QGNSFQ G I
Sbjct: 408 FTHLHVKAPHSPFQNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQDGSISK 467
Query: 265 XXXXXXXXXXXRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLD 324
+++ + SL+ ++ L + LS+ G L+N+ LD
Sbjct: 468 -------------TNLLQMVGSLE-ILILSSCNLLSIDQQAFHG--------LRNVNHLD 505
Query: 325 LSFNNLTGQIPRTLFNIGSLNYLFLGNNSLS----GTLPTQKSENLQNIDLSYNHLSGP- 379
LS N+LTG L ++ L YL + +N++ LP +++ I+LS+N L
Sbjct: 506 LSHNSLTGDSMDALSHLKGL-YLNMASNNIRIIPPHLLPALSQQSI--INLSHNPLDCTC 562
Query: 380 ----FPSWVTSNLQ 389
F +W NL
Sbjct: 563 SNIHFITWYKENLH 576
>pdb|2K46|A Chain A, Xenopus Laevis Malectin Complexed With Nigerose
(Glcalpha1- 3glc)
pdb|2KR2|A Chain A, Xenopus Laevis Malectin Complexed With Maltose
(Glcalpha1-4glc)
Length = 190
Score = 31.2 bits (69), Expect = 2.8, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 29/71 (40%), Gaps = 8/71 (11%)
Query: 497 LYQTSRISPGSLRYYGLGLENGPYNVSLLFAETNILDRSTERWESLARRVFDIYIQGTLR 556
LYQT R + S Y E G Y + L FAE ++VFD+ + G
Sbjct: 60 LYQTERYNEDSFGYDIPIKEEGEYVLVLKFAEVYFAQSQ--------QKVFDVRVNGHTV 111
Query: 557 WKDFDISKEAG 567
KD DI G
Sbjct: 112 VKDLDIFDRVG 122
>pdb|2JWP|A Chain A, Malectin
Length = 174
Score = 31.2 bits (69), Expect = 2.8, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 29/71 (40%), Gaps = 8/71 (11%)
Query: 497 LYQTSRISPGSLRYYGLGLENGPYNVSLLFAETNILDRSTERWESLARRVFDIYIQGTLR 556
LYQT R + S Y E G Y + L FAE ++VFD+ + G
Sbjct: 56 LYQTERYNEDSFGYDIPIKEEGEYVLVLKFAEVYFAQSQ--------QKVFDVRVNGHTV 107
Query: 557 WKDFDISKEAG 567
KD DI G
Sbjct: 108 VKDLDIFDRVG 118
>pdb|2H8H|A Chain A, Src Kinase In Complex With A Quinazoline Inhibitor
Length = 535
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 723 YLAPEYAMRGHLTEKADVFSFGVAALEIIS-GRANSDNSLDMEKIYLLEWAWNL 775
+ APE A+ G T K+DV+SFG+ E+ + GR ++ E + +E + +
Sbjct: 430 WTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRM 483
>pdb|3UBD|A Chain A, Structure Of N-Terminal Domain Of Rsk2 Kinase In Complex
With Flavonoid Glycoside Sl0101
Length = 304
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 22/32 (68%), Gaps = 2/32 (6%)
Query: 723 YLAPEYA-MRGHLTEKADVFSFGVAALEIISG 753
Y+APE RGH T+ AD +SFGV E+++G
Sbjct: 192 YMAPEVVNRRGH-TQSADWWSFGVLMFEMLTG 222
>pdb|2PTK|A Chain A, Chicken Src Tyrosine Kinase
Length = 453
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 723 YLAPEYAMRGHLTEKADVFSFGVAALEIIS 752
+ APE A+ G T K+DV+SFG+ E+ +
Sbjct: 348 WTAPEAALYGRFTIKSDVWSFGILLTELTT 377
>pdb|4EL9|A Chain A, Structure Of N-Terminal Kinase Domain Of Rsk2 With Afzelin
pdb|4GUE|A Chain A, Structure Of N-terminal Kinase Domain Of Rsk2 With
Flavonoid Glycoside Quercitrin
Length = 305
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 22/32 (68%), Gaps = 2/32 (6%)
Query: 723 YLAPEYA-MRGHLTEKADVFSFGVAALEIISG 753
Y+APE RGH T+ AD +SFGV E+++G
Sbjct: 193 YMAPEVVNRRGH-TQSADWWSFGVLMFEMLTG 223
>pdb|1KSW|A Chain A, Structure Of Human C-Src Tyrosine Kinase (Thr338gly
Mutant) In Complex With N6-Benzyl Adp
Length = 452
Score = 30.8 bits (68), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 723 YLAPEYAMRGHLTEKADVFSFGVAALEIIS 752
+ APE A+ G T K+DV+SFG+ E+ +
Sbjct: 347 WTAPEAALYGRFTIKSDVWSFGILLTELTT 376
>pdb|1FMK|A Chain A, Crystal Structure Of Human Tyrosine-Protein Kinase C-Src
pdb|2SRC|A Chain A, Crystal Structure Of Human Tyrosine-protein Kinase C-src,
In Complex With Amp-pnp
Length = 452
Score = 30.8 bits (68), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 723 YLAPEYAMRGHLTEKADVFSFGVAALEIIS 752
+ APE A+ G T K+DV+SFG+ E+ +
Sbjct: 347 WTAPEAALYGRFTIKSDVWSFGILLTELTT 376
>pdb|1Y57|A Chain A, Structure Of Unphosphorylated C-Src In Complex With An
Inhibitor
Length = 452
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 723 YLAPEYAMRGHLTEKADVFSFGVAALEIIS 752
+ APE A+ G T K+DV+SFG+ E+ +
Sbjct: 347 WTAPEAALYGRFTIKSDVWSFGILLTELTT 376
>pdb|3G51|A Chain A, Structural Diversity Of The Active Conformation Of The N-
Terminal Kinase Domain Of P90 Ribosomal S6 Kinase 2
Length = 325
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 22/32 (68%), Gaps = 2/32 (6%)
Query: 723 YLAPEYA-MRGHLTEKADVFSFGVAALEIISG 753
Y+APE RGH T+ AD +SFGV E+++G
Sbjct: 192 YMAPEVVNRRGH-TQSADWWSFGVLMFEMLTG 222
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 30.8 bits (68), Expect = 3.9, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Query: 317 LQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQKSENLQNID---LSY 373
L LQ L L NNL T ++G+L +LFL N + ++P L ++D L
Sbjct: 127 LAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIP-SVPEHAFRGLHSLDRLLLHQ 185
Query: 374 NHLSGPFP 381
NH++ P
Sbjct: 186 NHVARVHP 193
Score = 29.3 bits (64), Expect = 9.0, Method: Composition-based stats.
Identities = 44/181 (24%), Positives = 65/181 (35%), Gaps = 3/181 (1%)
Query: 174 KELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEI-PSTYAKLRNMQTLWASDA 232
+ LT+L +N +G L LEQL L+ + P+T+ L ++ TL
Sbjct: 55 RNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRC 114
Query: 233 PFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPXXXXXXXXXXXXRISDIYNVSSSLDFVM- 291
P L+ L Q N+ Q +P + S +
Sbjct: 115 GLQELGPGLFRGLAALQYLYLQDNNLQA-LPDNTFRDLGNLTHLFLHGNRIPSVPEHAFR 173
Query: 292 SLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGN 351
L +L L L + P +L L TL L NNL+ L + SL YL L +
Sbjct: 174 GLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLSMLPAEVLVPLRSLQYLRLND 233
Query: 352 N 352
N
Sbjct: 234 N 234
>pdb|3KRW|A Chain A, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|A Chain A, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
Length = 688
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 5/90 (5%)
Query: 671 EVLVGIDSKPNTFS-YAELRSATQDFDPSN--KLGEGGYGPVYKKTQLMLS-NFHGYLAP 726
E+++G++ N F Y +L+ A D ++ + G + K + S HGY+AP
Sbjct: 299 EIILGLEHMHNRFVVYRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASVGTHGYMAP 358
Query: 727 EYAMRG-HLTEKADVFSFGVAALEIISGRA 755
E +G AD FS G +++ G +
Sbjct: 359 EVLQKGVAYDSSADWFSLGCMLFKLLRGHS 388
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 45/99 (45%), Gaps = 2/99 (2%)
Query: 312 SGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQKSENLQNIDL 371
S I LQ+++TLDL+ +T P L + +L L+L N ++ P NLQ + +
Sbjct: 107 SAIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSI 164
Query: 372 SYNHLSGPFPSWVTSNLQMNLVANNFTFDRSNISVFPGL 410
N ++ P S L +N D S ++ P L
Sbjct: 165 GNNQVNDLTPLANLSKLTTLRADDNKISDISPLASLPNL 203
>pdb|3CIK|A Chain A, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3V5W|A Chain A, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 689
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 5/90 (5%)
Query: 671 EVLVGIDSKPNTFS-YAELRSATQDFDPSN--KLGEGGYGPVYKKTQLMLS-NFHGYLAP 726
E+++G++ N F Y +L+ A D ++ + G + K + S HGY+AP
Sbjct: 300 EIILGLEHMHNRFVVYRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASVGTHGYMAP 359
Query: 727 EYAMRG-HLTEKADVFSFGVAALEIISGRA 755
E +G AD FS G +++ G +
Sbjct: 360 EVLQKGVAYDSSADWFSLGCMLFKLLRGHS 389
>pdb|1OMW|A Chain A, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1YM7|A Chain A, G Protein-Coupled Receptor Kinase 2 (Grk2)
pdb|1YM7|B Chain B, G Protein-Coupled Receptor Kinase 2 (Grk2)
pdb|1YM7|C Chain C, G Protein-Coupled Receptor Kinase 2 (Grk2)
pdb|1YM7|D Chain D, G Protein-Coupled Receptor Kinase 2 (Grk2)
pdb|2BCJ|A Chain A, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
pdb|3UZS|A Chain A, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3UZT|A Chain A, Structure Of The C13.18 Rna Aptamer In Complex With G
Protein-Coupled Receptor Kinase 2
Length = 689
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 5/90 (5%)
Query: 671 EVLVGIDSKPNTFS-YAELRSATQDFDPSN--KLGEGGYGPVYKKTQLMLS-NFHGYLAP 726
E+++G++ N F Y +L+ A D ++ + G + K + S HGY+AP
Sbjct: 300 EIILGLEHMHNRFVVYRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASVGTHGYMAP 359
Query: 727 EYAMRG-HLTEKADVFSFGVAALEIISGRA 755
E +G AD FS G +++ G +
Sbjct: 360 EVLQKGVAYDSSADWFSLGCMLFKLLRGHS 389
>pdb|3PSC|A Chain A, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|A Chain A, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|A Chain A, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
Length = 695
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 5/90 (5%)
Query: 671 EVLVGIDSKPNTFS-YAELRSATQDFDPSN--KLGEGGYGPVYKKTQLMLS-NFHGYLAP 726
E+++G++ N F Y +L+ A D ++ + G + K + S HGY+AP
Sbjct: 300 EIILGLEHMHNRFVVYRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASVGTHGYMAP 359
Query: 727 EYAMRG-HLTEKADVFSFGVAALEIISGRA 755
E +G AD FS G +++ G +
Sbjct: 360 EVLQKGVAYDSSADWFSLGCMLFKLLRGHS 389
>pdb|3DTC|A Chain A, Crystal Structure Of Mixed-Lineage Kinase Mlk1 Complexed
With Compound 16
Length = 271
Score = 30.4 bits (67), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 11/46 (23%), Positives = 27/46 (58%)
Query: 710 YKKTQLMLSNFHGYLAPEYAMRGHLTEKADVFSFGVAALEIISGRA 755
++ T++ + + ++APE ++ +DV+S+GV E+++G
Sbjct: 167 HRTTKMSAAGAYAWMAPEVIRASMFSKGSDVWSYGVLLWELLTGEV 212
>pdb|3LCT|A Chain A, Crystal Structure Of The Anaplastic Lymphoma Kinase
Catalytic Domain
pdb|3LCS|A Chain A, Crystal Structure Of The Anaplastic Lymphoma Kinase
Catalytic Domain
Length = 344
Score = 30.4 bits (67), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Query: 694 DFDPSNKLGEGGYGPVYKKTQLMLSNFHGYLAPEYAMRGHLTEKADVFSFGVAALEIIS 752
DF + + GY Y+K + ++ PE M G T K D +SFGV EI S
Sbjct: 204 DFGMARDIYRAGY---YRKGGCAMLPVK-WMPPEAFMEGIFTSKTDTWSFGVLLWEIFS 258
>pdb|3A4O|X Chain X, Lyn Kinase Domain
Length = 286
Score = 30.4 bits (67), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 7/43 (16%)
Query: 723 YLAPEYAMRGHLTEKADVFSFGVAALEIIS-------GRANSD 758
+ APE G T K+DV+SFG+ EI++ GR N+D
Sbjct: 177 WTAPEAINFGCFTIKSDVWSFGILLYEIVTYGKIPYPGRTNAD 219
>pdb|3L9P|A Chain A, Crystal Structure Of The Anaplastic Lymphoma Kinase
Catalytic Domain
Length = 367
Score = 30.4 bits (67), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Query: 694 DFDPSNKLGEGGYGPVYKKTQLMLSNFHGYLAPEYAMRGHLTEKADVFSFGVAALEIIS 752
DF + + GY Y+K + ++ PE M G T K D +SFGV EI S
Sbjct: 227 DFGMARDIYRAGY---YRKGGCAMLPVK-WMPPEAFMEGIFTSKTDTWSFGVLLWEIFS 281
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 312 SGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQKSENLQNIDL 371
+G+ L L++L L N +T L + L+ L L +N +S +P LQN+ L
Sbjct: 125 NGLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYL 182
Query: 372 SYNHLS 377
S NH+S
Sbjct: 183 SKNHIS 188
>pdb|4ECN|A Chain A, Crystal Structure Of A Leucine-Rich Repeat Protein
(Bt_0210) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.80 A Resolution
Length = 876
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 22/39 (56%)
Query: 146 IGNLSRLMLLSVAHNVFSGSVPRELGNLKELTVLSFGNN 184
+ N R+ LS+A G VP +G L EL VLSFG +
Sbjct: 319 LDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTH 357
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 30.0 bits (66), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 46/98 (46%), Gaps = 11/98 (11%)
Query: 308 GSIPSGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQKSENLQ 367
S+P+GI N Q L L N +T P ++ +L L+LG+N L G LP ++L
Sbjct: 32 ASVPAGIPT--NAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLT 88
Query: 368 N---IDLSYNHLSGPFPSWVTSNL----QMNLVANNFT 398
+DL N L+ PS V L ++ + N T
Sbjct: 89 QLTVLDLGTNQLTV-LPSAVFDRLVHLKELFMCCNKLT 125
>pdb|2XB7|A Chain A, Structure Of Human Anaplastic Lymphoma Kinase In Complex
With Nvp- Tae684
pdb|2XBA|A Chain A, Structure Of Human Anaplastic Lymphoma Kinase In Complex
With Pha-E429
Length = 315
Score = 30.0 bits (66), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 723 YLAPEYAMRGHLTEKADVFSFGVAALEIIS 752
++ PE M G T K D +SFGV EI S
Sbjct: 203 WMPPEAFMEGIFTSKTDTWSFGVLLWEIFS 232
>pdb|4FNX|A Chain A, Crystal Structure Of The Apo R1275q Anaplastic Lymphoma
Kinase Catalytic Domain
pdb|4FNY|A Chain A, Crystal Structure Of The R1275q Anaplastic Lymphoma Kinase
Catalytic Domain In Complex With A Benzoxazole Inhibitor
Length = 327
Score = 30.0 bits (66), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 723 YLAPEYAMRGHLTEKADVFSFGVAALEIIS 752
++ PE M G T K D +SFGV EI S
Sbjct: 212 WMPPEAFMEGIFTSKTDTWSFGVLLWEIFS 241
>pdb|4FNZ|A Chain A, Crystal Structure Of Human Anaplastic Lymphoma Kinase In
Complex With Piperidine-Carboxamide Inhibitor 2
Length = 327
Score = 30.0 bits (66), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 723 YLAPEYAMRGHLTEKADVFSFGVAALEIIS 752
++ PE M G T K D +SFGV EI S
Sbjct: 212 WMPPEAFMEGIFTSKTDTWSFGVLLWEIFS 241
>pdb|4DCE|A Chain A, Crystal Structure Of Human Anaplastic Lymphoma Kinase In
Complex With A Piperidine-Carboxamide Inhibitor
pdb|4DCE|B Chain B, Crystal Structure Of Human Anaplastic Lymphoma Kinase In
Complex With A Piperidine-Carboxamide Inhibitor
pdb|4FOD|A Chain A, Crystal Structure Of Human Anaplastic Lymphoma Kinase In
Complex With Acyliminobenzimidazole Inhibitor 36
Length = 333
Score = 30.0 bits (66), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 723 YLAPEYAMRGHLTEKADVFSFGVAALEIIS 752
++ PE M G T K D +SFGV EI S
Sbjct: 218 WMPPEAFMEGIFTSKTDTWSFGVLLWEIFS 247
>pdb|3AOX|A Chain A, X-Ray Crystal Structure Of Human Anaplastic Lymphoma
Kinase In Complex With Ch5424802
Length = 344
Score = 30.0 bits (66), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 723 YLAPEYAMRGHLTEKADVFSFGVAALEIIS 752
++ PE M G T K D +SFGV EI S
Sbjct: 228 WMPPEAFMEGIFTSKTDTWSFGVLLWEIFS 257
>pdb|2YJR|A Chain A, Structure Of F1174l Mutant Anaplastic Lymphoma Kinase
Length = 342
Score = 30.0 bits (66), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 723 YLAPEYAMRGHLTEKADVFSFGVAALEIIS 752
++ PE M G T K D +SFGV EI S
Sbjct: 226 WMPPEAFMEGIFTSKTDTWSFGVLLWEIFS 255
>pdb|4FNW|A Chain A, Crystal Structure Of The Apo F1174l Anaplastic Lymphoma
Kinase Catalytic Domain
Length = 327
Score = 29.6 bits (65), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 723 YLAPEYAMRGHLTEKADVFSFGVAALEIIS 752
++ PE M G T K D +SFGV EI S
Sbjct: 212 WMPPEAFMEGIFTSKTDTWSFGVLLWEIFS 241
>pdb|2YHV|A Chain A, Structure Of L1196m Mutant Anaplastic Lymphoma Kinase
Length = 342
Score = 29.6 bits (65), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 723 YLAPEYAMRGHLTEKADVFSFGVAALEIIS 752
++ PE M G T K D +SFGV EI S
Sbjct: 226 WMPPEAFMEGIFTSKTDTWSFGVLLWEIFS 255
>pdb|2YJS|A Chain A, Structure Of C1156y Mutant Anaplastic Lymphoma Kinase
Length = 342
Score = 29.6 bits (65), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 723 YLAPEYAMRGHLTEKADVFSFGVAALEIIS 752
++ PE M G T K D +SFGV EI S
Sbjct: 226 WMPPEAFMEGIFTSKTDTWSFGVLLWEIFS 255
>pdb|2YFX|A Chain A, Structure Of L1196m Mutant Anaplastic Lymphoma Kinase In
Complex With Crizotinib
Length = 327
Score = 29.6 bits (65), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 723 YLAPEYAMRGHLTEKADVFSFGVAALEIIS 752
++ PE M G T K D +SFGV EI S
Sbjct: 211 WMPPEAFMEGIFTSKTDTWSFGVLLWEIFS 240
>pdb|2XP2|A Chain A, Structure Of The Human Anaplastic Lymphoma Kinase In
Complex With Crizotinib (Pf-02341066)
Length = 327
Score = 29.6 bits (65), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 723 YLAPEYAMRGHLTEKADVFSFGVAALEIIS 752
++ PE M G T K D +SFGV EI S
Sbjct: 211 WMPPEAFMEGIFTSKTDTWSFGVLLWEIFS 240
>pdb|4FOB|A Chain A, Crystal Structure Of Human Anaplastic Lymphoma Kinase In
Complex With Acyliminobenzimidazole Inhibitor 1
pdb|4FOC|A Chain A, Crystal Structure Of Human Anaplastic Lymphoma Kinase In
Complex With Acyliminobenzimidazole Inhibitor 2
Length = 353
Score = 29.6 bits (65), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 723 YLAPEYAMRGHLTEKADVFSFGVAALEIIS 752
++ PE M G T K D +SFGV EI S
Sbjct: 238 WMPPEAFMEGIFTSKTDTWSFGVLLWEIFS 267
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 29.6 bits (65), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 320 LQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSG-TLPTQKSENLQNIDLSYNHL 376
L +DLS+N L + + L L++ NN L L Q L+ +DLS+NHL
Sbjct: 256 LVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHL 313
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 29.3 bits (64), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 312 SGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQKSENLQNIDL 371
+G+ L L++L L N +T L + L+ L L +N +S +P LQN+ L
Sbjct: 128 NGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYL 185
Query: 372 SYNHLS 377
S NH+S
Sbjct: 186 SKNHIS 191
>pdb|1AD5|A Chain A, Src Family Kinase Hck-Amp-Pnp Complex
pdb|1AD5|B Chain B, Src Family Kinase Hck-Amp-Pnp Complex
pdb|2HCK|A Chain A, Src Family Kinase Hck-Quercetin Complex
pdb|2HCK|B Chain B, Src Family Kinase Hck-Quercetin Complex
Length = 438
Score = 29.3 bits (64), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 723 YLAPEYAMRGHLTEKADVFSFGVAALEIIS 752
+ APE G T K+DV+SFG+ +EI++
Sbjct: 335 WTAPEAINFGSFTIKSDVWSFGILLMEIVT 364
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.134 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,357,593
Number of Sequences: 62578
Number of extensions: 1201203
Number of successful extensions: 3605
Number of sequences better than 100.0: 185
Number of HSP's better than 100.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 104
Number of HSP's that attempted gapping in prelim test: 3121
Number of HSP's gapped (non-prelim): 386
length of query: 907
length of database: 14,973,337
effective HSP length: 108
effective length of query: 799
effective length of database: 8,214,913
effective search space: 6563715487
effective search space used: 6563715487
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)