Query 002562
Match_columns 907
No_of_seqs 610 out of 5870
Neff 8.7
Searched_HMMs 29240
Date Tue Mar 26 16:07:25 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/002562.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_1281-1285//hhsearch_pdb/002562hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 1.0 1 1 338.3 28.8 334 39-400 9-383 (768)
2 4eco_A Uncharacterized protein 1.0 1 1 337.6 23.0 342 38-398 26-501 (636)
3 4ecn_A Leucine-rich repeat pro 1.0 1 1 335.4 25.3 344 37-398 264-710 (876)
4 3rgz_A Protein brassinosteroid 1.0 1 1 322.2 20.3 294 101-399 99-408 (768)
5 1ogq_A PGIP-2, polygalacturona 1.0 1 1 305.2 20.3 295 38-375 2-302 (313)
6 4eco_A Uncharacterized protein 1.0 1 1 286.0 21.9 280 113-399 194-527 (636)
7 2id5_A Lingo-1, leucine rich r 1.0 1 1 285.5 24.6 315 88-402 14-337 (477)
8 3v47_A TOLL-like receptor 5B a 1.0 1 1 285.2 21.8 298 100-397 28-359 (455)
9 3j0a_A TOLL-like receptor 5; m 1.0 1 1 280.2 29.6 300 100-399 22-376 (844)
10 3t6q_A CD180 antigen; protein- 1.0 1 1 273.7 27.8 298 99-398 30-389 (606)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=338.27 Aligned_cols=334 Identities=27% Similarity=0.384 Sum_probs=218.6
Q ss_pred CCHHHHHHHHHHHHHCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCEEEEEEEEECCCCCCCC
Q ss_conf 9989999999999829999-999987889899999878877678899999980306878999601099999436775555
Q 002562 39 TDPAEVRALNSILQQWDAP-AVPLWNISGEPCSGSALNATDSEFESPNNNPAIVCDCTFDNGATCHITKLRVYALNKKGV 117 (907)
Q Consensus 39 ~~~~~~~aL~~~~~~~~~~-~~~~W~~~~~~C~~~~~w~~~~~~~~~~~~~gv~C~~~~~~~~~~~v~~L~l~~~~l~g~ 117 (907)
...+|+.||++||+++.++ .+.+|+.+.|||. | .||.|+ ..+|+.|++.+..+.|.
T Consensus 9 ~~~~~~~all~~k~~~~~~~~l~~W~~~~~~C~----w------------~gv~C~-------~~~v~~L~L~~~~l~g~ 65 (768)
T 3rgz_A 9 SLYREIHQLISFKDVLPDKNLLPDWSSNKNPCT----F------------DGVTCR-------DDKVTSIDLSSKPLNVG 65 (768)
T ss_dssp CHHHHHHHHHHHHTTCSCTTSSTTCCTTSCGGG----S------------TTEEEE-------TTEEEEEECTTSCCCEE
T ss_pred CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC----C------------CCEEEC-------CCCEEEEECCCCCCCCC
T ss_conf 878999999999966789621468789998768----8------------413878-------99278987789986775
Q ss_pred ---CCCC-----------------------CCCCCCCCEEECCCCCCCCCCCH--HHCCCCCCCEEECCCCCCCCCCCCC
Q ss_conf ---8800-----------------------13999998997647768998870--0038856758973266688886634
Q 002562 118 ---IPEE-----------------------LVTLQYLTFLKIDQNFFTGPLPS--FIGNLSRLMLLSVAHNVFSGSVPRE 169 (907)
Q Consensus 118 ---~p~~-----------------------l~~l~~L~~L~Ls~n~l~~~~p~--~l~~l~~L~~L~Ls~n~l~~~ip~~ 169 (907)
+++. |..+++|++|+|++|.+.+.+|. .++++++|++|+|++|.+.+.+|..
T Consensus 66 ~~~l~~~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~ 145 (768)
T 3rgz_A 66 FSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVS 145 (768)
T ss_dssp HHHHHHHTTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCC
T ss_pred CCCCCHHHHCCCCCCCCCCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHH
T ss_conf 57669657316802246786888678703324578899898989857870789678727889998989688267747977
Q ss_pred C-CCCCCCCEEEECCCCCCCCCCHH---HCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCCCCCC
Q ss_conf 5-79989997980173388789610---0388866699833658998897000499676574424875865577122486
Q 002562 170 L-GNLKELTVLSFGNNNFSGTLPPE---IGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDAPFTGKIPDFIGNW 245 (907)
Q Consensus 170 l-~~l~~L~~L~Ls~N~l~~~~p~~---l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l 245 (907)
+ .++++|++|+|++|.+++..|.. +.++++|++|++++|.+.+..+. ..+++|++|++++|.+++.+|. ++++
T Consensus 146 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~-l~~l 222 (768)
T 3rgz_A 146 GGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIPF-LGDC 222 (768)
T ss_dssp SCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--TTCTTCCEEECCSSCCCSCCCB-CTTC
T ss_pred HHCCCCCCCEEECCCCCCCCCCCHHHHHHCCCCCCCEEECCCCCCCCCCCC--CCCCCCCEEECCCCCCCCCCCC-CCCC
T ss_conf 856388999898979835885871556643589889898978803465784--5478689898928827887711-1269
Q ss_pred CCCCEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCCCCCCC-CCCCEEE
Q ss_conf 666478821563568798223799999979715876998892322299877854343664766898358999-9998894
Q 002562 246 TKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGEL-QNLQTLD 324 (907)
Q Consensus 246 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l-~~L~~L~ 324 (907)
++|++|++++|.+++.+|..+..+++|+.|++++|.+....+.. .+++|+.|++++|.+.+.+|..+... ++|+.|+
T Consensus 223 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~ 300 (768)
T 3rgz_A 223 SALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLD 300 (768)
T ss_dssp CSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEE
T ss_pred CCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCC--CCCCCCEEECCCCCCCCCCCHHHHHHCCCCCEEE
T ss_conf 99998979488587816577744888898989888665716724--3687898979178557725888884468688998
Q ss_pred CCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCC---CCCCCCEEECCCCCCCCCCCHHHC--C-CCC-CCCCCCCC
Q ss_conf 7689788778432208999868976478796668988---799976895337867898970000--2-341-11235432
Q 002562 325 LSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQ---KSENLQNIDLSYNHLSGPFPSWVT--S-NLQ-MNLVANNF 397 (907)
Q Consensus 325 Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~---~~~~L~~L~Ls~N~l~g~iP~~~~--~-~l~-l~l~~N~~ 397 (907)
+++|++++.+|..+..+++|+.|++++|.+++.+|.. ..++|+.|++++|.+++.+|..+. . .++ ++++.|.+
T Consensus 301 Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l 380 (768)
T 3rgz_A 301 LSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNF 380 (768)
T ss_dssp CCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEE
T ss_pred CCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHHHHCCCCEEECCCCCC
T ss_conf 96896778423677558776677897885257379788724888878848478437623098986322771998627874
Q ss_pred CCC
Q ss_conf 135
Q 002562 398 TFD 400 (907)
Q Consensus 398 ~~~ 400 (907)
.+.
T Consensus 381 ~~~ 383 (768)
T 3rgz_A 381 SGP 383 (768)
T ss_dssp EEE
T ss_pred CCC
T ss_conf 787
No 2
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=1.00 E-value=1 Score=337.64 Aligned_cols=342 Identities=18% Similarity=0.244 Sum_probs=202.6
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---CCEEECCCCCCCCEEEEEEEEECCCCC
Q ss_conf 99989999999999829999999987889899999878877678899999---980306878999601099999436775
Q 002562 38 TTDPAEVRALNSILQQWDAPAVPLWNISGEPCSGSALNATDSEFESPNNN---PAIVCDCTFDNGATCHITKLRVYALNK 114 (907)
Q Consensus 38 ~~~~~~~~aL~~~~~~~~~~~~~~W~~~~~~C~~~~~w~~~~~~~~~~~~---~gv~C~~~~~~~~~~~v~~L~l~~~~l 114 (907)
.....|+.||.+++.+++.+ .|...++.|.....|... ..++.| .||.|+.. ++|+.|++.++++
T Consensus 26 ~~~~~d~~aL~~~~~~~~~~---~w~~~~~~~~~~~~W~~~---~~~c~w~~~~GV~C~~~------~~V~~L~L~~~~l 93 (636)
T 4eco_A 26 AEYIKDYLALKEIWDALNGK---NWSQQGFGTQPGANWNFN---KELDMWGAQPGVSLNSN------GRVTGLSLEGFGA 93 (636)
T ss_dssp CHHHHHHHHHHHHHHHTTGG---GCCCCC------CCCCCS---SCGGGTTCCTTEEECTT------CCEEEEECTTSCC
T ss_pred HHHHHHHHHHHHHHHHCCCC---CCCCCCCCCCCCCCCCCC---CCCCCCCCCCCEEECCC------CCEEEEEECCCCC
T ss_conf 66778899999999975899---745477677657887779---98000147798487678------9788998427665
Q ss_pred CCCCCCCCCCCCCCCEEECCCCCC--------------------------------------------------------
Q ss_conf 555880013999998997647768--------------------------------------------------------
Q 002562 115 KGVIPEELVTLQYLTFLKIDQNFF-------------------------------------------------------- 138 (907)
Q Consensus 115 ~g~~p~~l~~l~~L~~L~Ls~n~l-------------------------------------------------------- 138 (907)
+|.+|++|+++++|++|+|++|.+
T Consensus 94 ~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~ 173 (636)
T 4eco_A 94 SGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQK 173 (636)
T ss_dssp EEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSC
T ss_pred CCCCCHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCC
T ss_conf 77288578568451189876885123774334532356733888888876577755411706667788777764275546
Q ss_pred ----------------------CCCCCHHHCCCCCCCEEECCCCCCCCC-----------------CCCCCC--CCCCCC
Q ss_conf ----------------------998870003885675897326668888-----------------663457--998999
Q 002562 139 ----------------------TGPLPSFIGNLSRLMLLSVAHNVFSGS-----------------VPRELG--NLKELT 177 (907)
Q Consensus 139 ----------------------~~~~p~~l~~l~~L~~L~Ls~n~l~~~-----------------ip~~l~--~l~~L~ 177 (907)
++ +|..++++++|++|+|++|.+++. +|..++ ++++|+
T Consensus 174 ~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~ 252 (636)
T 4eco_A 174 SIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLT 252 (636)
T ss_dssp CCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCC
T ss_pred CCCCCCCCCHHHHHHCCCCCCCCC-CCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCHHCCCCCHHHHHCCCCCCC
T ss_conf 541013344213001013677750-7877725647878988688236642322122222100102486322004468788
Q ss_pred EEEECCCCCCCCCCHHHCCCCCCCEEECCCCC-CCC-CCCHHHCCC------CCCCEEECCCCCCCCCCCC--CCCCCCC
Q ss_conf 79801733887896100388866699833658-998-897000499------6765744248758655771--2248666
Q 002562 178 VLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWG-AGG-EIPSTYAKL------RNMQTLWASDAPFTGKIPD--FIGNWTK 247 (907)
Q Consensus 178 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~-l~~-~~p~~l~~l------~~L~~L~L~~n~l~~~~p~--~l~~l~~ 247 (907)
+|+|++|.+.+.+|..++++++|+.|++++|. +++ .+|..+..+ ++|++|++++|.++ .+|. .++++++
T Consensus 253 ~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~ 331 (636)
T 4eco_A 253 DVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKK 331 (636)
T ss_dssp EEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTT
T ss_pred EEEECCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEECCCCCCC-CCCCHHHHCCCCC
T ss_conf 898048857762838883499978897847988766533578875430465788888989799377-6676555425788
Q ss_pred CCEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHCCCCC-CCEEECCCCCCCCCCCCCCCCCC--CCCEEE
Q ss_conf 647882156356879822379999997971587699889232229987-78543436647668983589999--998894
Q 002562 248 LKSLRFQGNSFQGPIPSSLSKLASLDSLRISDIYNVSSSLDFVMSLKN-LTDLSLRNALITGSIPSGIGELQ--NLQTLD 324 (907)
Q Consensus 248 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~-L~~L~L~~n~l~~~~p~~l~~l~--~L~~L~ 324 (907)
|++|++++|.++|.+| .+..+++|+.|++++|.+. ..+..+..+++ |+.|++++|.+. .+|..+..+. +|+.|+
T Consensus 332 L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~ 408 (636)
T 4eco_A 332 LGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAID 408 (636)
T ss_dssp CCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEE
T ss_pred CCEEECCCCCCCCCHH-HHCCCCCCCEEECCCCCCC-CCCHHHHHHCCCCCEEECCCCCCC-CCCHHHHHCCCCCCCEEE
T ss_conf 8989690880705166-6478898898989899403-033756510236868985298275-446655333457668897
Q ss_pred CCCCCCCCCCCHHHH-------CCCCCCEEECCCCCCCCCCCCC---CCCCCCEEECCCCCCCCCCCHHHCC--------
Q ss_conf 768978877843220-------8999868976478796668988---7999768953378678989700002--------
Q 002562 325 LSFNNLTGQIPRTLF-------NIGSLNYLFLGNNSLSGTLPTQ---KSENLQNIDLSYNHLSGPFPSWVTS-------- 386 (907)
Q Consensus 325 Ls~N~l~~~~p~~l~-------~l~~L~~L~Ls~N~l~g~~p~~---~~~~L~~L~Ls~N~l~g~iP~~~~~-------- 386 (907)
+++|.+++.+|..+. .+++|+.|++++|.++ .+|.. ..++|+.|++++|.++ .+|.....
T Consensus 409 Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~ 486 (636)
T 4eco_A 409 FSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKN 486 (636)
T ss_dssp CCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTT
T ss_pred CCCCCCCCCCHHHHCCCCCCCCCCCCCCEEECCCCCCC-CCCHHHHCCCCCCCEEECCCCCCC-CCCHHHHCCCCCCCCC
T ss_conf 74885788652442002201125898888977279668-678788715898898989799788-7397884044001221
Q ss_pred --CCC-CCCCCCCCC
Q ss_conf --341-112354321
Q 002562 387 --NLQ-MNLVANNFT 398 (907)
Q Consensus 387 --~l~-l~l~~N~~~ 398 (907)
.++ ++++.|.+.
T Consensus 487 l~~L~~L~Ls~N~l~ 501 (636)
T 4eco_A 487 TYLLTSIDLRFNKLT 501 (636)
T ss_dssp GGGCCEEECCSSCCC
T ss_pred CCCCCEEECCCCCCC
T ss_conf 477338989699388
No 3
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=1.00 E-value=1 Score=335.40 Aligned_cols=344 Identities=19% Similarity=0.223 Sum_probs=248.9
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCCCCCCCC-----CCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCEEEEEEEEECC
Q ss_conf 999989999999999829999999987889-----899999878877678899999980306878999601099999436
Q 002562 37 STTDPAEVRALNSILQQWDAPAVPLWNISG-----EPCSGSALNATDSEFESPNNNPAIVCDCTFDNGATCHITKLRVYA 111 (907)
Q Consensus 37 ~~~~~~~~~aL~~~~~~~~~~~~~~W~~~~-----~~C~~~~~w~~~~~~~~~~~~~gv~C~~~~~~~~~~~v~~L~l~~ 111 (907)
+.+..+|+.||++||+++..+ +|+.++ +||.| .|....+........||.|++ .++|+.|+|.+
T Consensus 264 ~~~~~~d~~ALl~~k~~l~~~---~W~~~~~~~~~~~~~C--~W~~~~~~~~w~~~~GV~C~~------~~~V~~L~Ls~ 332 (876)
T 4ecn_A 264 TAEYIKDYKALKAIWEALDGK---NWRYYSGTINNTIHSL--NWNFNKELDMWGDQPGVDLDN------NGRVTGLSLAG 332 (876)
T ss_dssp CCHHHHHHHHHHHHHHHTTGG---GCCCCCSSCSSCCCCC--SCCCSSCGGGTTCCTTEEECT------TSCEEEEECTT
T ss_pred CCCCHHHHHHHHHHHHHCCCC---CCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCEEECC------CCCEEEEECCC
T ss_conf 546317899999999973799---9886898653367764--034666545335768428369------99798998724
Q ss_pred CCCCCCCCCCCCCCCCCCEEEC-CCCCCCCCCCHHH--------------------------------------------
Q ss_conf 7755558800139999989976-4776899887000--------------------------------------------
Q 002562 112 LNKKGVIPEELVTLQYLTFLKI-DQNFFTGPLPSFI-------------------------------------------- 146 (907)
Q Consensus 112 ~~l~g~~p~~l~~l~~L~~L~L-s~n~l~~~~p~~l-------------------------------------------- 146 (907)
++++|.+|+.|++|++|++|+| ++|.+.|..|...
T Consensus 333 ~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~ 412 (876)
T 4ecn_A 333 FGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNP 412 (876)
T ss_dssp TCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCT
T ss_pred CCCCCCCCHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC
T ss_conf 78999485577415556284301256335666422234454411567888777666654203751115678787765073
Q ss_pred -------CCCCCCCEEECC--CCCCCCCCCCCCCCCCCCCEEEECCCCCCC-----------------CCCHHHC--CCC
Q ss_conf -------388567589732--666888866345799899979801733887-----------------8961003--888
Q 002562 147 -------GNLSRLMLLSVA--HNVFSGSVPRELGNLKELTVLSFGNNNFSG-----------------TLPPEIG--NLA 198 (907)
Q Consensus 147 -------~~l~~L~~L~Ls--~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~~-----------------~~p~~l~--~l~ 198 (907)
.....++.+.+. .|.+++ +|..|+++++|++|+|++|.+++ .+|..++ +++
T Consensus 413 ~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~ 491 (876)
T 4ecn_A 413 EMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLK 491 (876)
T ss_dssp TSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCT
T ss_pred CCCCCCCCCCCCHHHCEECCCCCCCCC-HHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCC
T ss_conf 324322235442312040566676152-1188756999878979688678874653223322222244587444025599
Q ss_pred CCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCC-CCC-CCCCCCCCCC-------CCCEEEEECCCCCCCCCC--CCC
Q ss_conf 66699833658998897000499676574424875-865-5771224866-------664788215635687982--237
Q 002562 199 KLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDAP-FTG-KIPDFIGNWT-------KLKSLRFQGNSFQGPIPS--SLS 267 (907)
Q Consensus 199 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~-~~p~~l~~l~-------~L~~L~L~~n~l~~~~p~--~l~ 267 (907)
+|+.|+|++|.+.+.+|..|.++++|+.|++++|. +++ .+|..++.++ +|+.|++++|.++ .+|. .+.
T Consensus 492 ~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~ 570 (876)
T 4ecn_A 492 DLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQ 570 (876)
T ss_dssp TCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHT
T ss_pred CCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEECCCCC-CCCCHHHHH
T ss_conf 9778987189887527387737999899989689876566461778752330155688319982289477-618723551
Q ss_pred CCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCC-CCEEECCCCCCCCCCCHHHHCCCC--C
Q ss_conf 9999997971587699889232229987785434366476689835899999-988947689788778432208999--8
Q 002562 268 KLASLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQN-LQTLDLSFNNLTGQIPRTLFNIGS--L 344 (907)
Q Consensus 268 ~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~-L~~L~Ls~N~l~~~~p~~l~~l~~--L 344 (907)
++++|+.|++++|.+. ..+ .+..+++|+.|++++|.+. .+|..+..+++ |+.|+|++|.++ .+|..+..+.. |
T Consensus 571 ~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L 646 (876)
T 4ecn_A 571 KMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVM 646 (876)
T ss_dssp TCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCE
T ss_pred CCCCCCEEECCCCCCC-CCH-HHCCCCCCEEEECCCCCCC-CCHHHHHHCCCCCCEEECCCCCCC-CCCHHHHCCCCCCC
T ss_conf 5898898989799825-621-2247985007987187125-035877525114989998499787-47644522556777
Q ss_pred CEEECCCCCCCCCCCCCC-------CCCCCEEECCCCCCCCCCCHHHC---CCCC-CCCCCCCCC
Q ss_conf 689764787966689887-------99976895337867898970000---2341-112354321
Q 002562 345 NYLFLGNNSLSGTLPTQK-------SENLQNIDLSYNHLSGPFPSWVT---SNLQ-MNLVANNFT 398 (907)
Q Consensus 345 ~~L~Ls~N~l~g~~p~~~-------~~~L~~L~Ls~N~l~g~iP~~~~---~~l~-l~l~~N~~~ 398 (907)
+.|++++|.+.+.+|... .++|+.|++++|.++ .+|..+. +.++ |+++.|.+.
T Consensus 647 ~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~ 710 (876)
T 4ecn_A 647 GSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT 710 (876)
T ss_dssp EEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS
T ss_pred CEEECCCCCCCCCCCCCHHHHCCCCCCCCCEEECCCCCCC-CCCHHHHCCCCCCCEEECCCCCCC
T ss_conf 8897708847886432000000135797688983199688-659788713898899989899688
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=322.15 Aligned_cols=294 Identities=29% Similarity=0.373 Sum_probs=218.4
Q ss_pred EEEEEEEEECCCCCCCCCCC--CCCCCCCCCEEECCCCCCCCCCCHHH-CCCCCCCEEECCCCCCCCCCCCC---CCCCC
Q ss_conf 01099999436775555880--01399999899764776899887000-38856758973266688886634---57998
Q 002562 101 TCHITKLRVYALNKKGVIPE--ELVTLQYLTFLKIDQNFFTGPLPSFI-GNLSRLMLLSVAHNVFSGSVPRE---LGNLK 174 (907)
Q Consensus 101 ~~~v~~L~l~~~~l~g~~p~--~l~~l~~L~~L~Ls~n~l~~~~p~~l-~~l~~L~~L~Ls~n~l~~~ip~~---l~~l~ 174 (907)
..+++.|+++++.++|.+|. .+.++++|++|+|++|.+.+.+|..+ .++++|++|+|++|.+++..|.. +.+++
T Consensus 99 l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~ 178 (768)
T 3rgz_A 99 SASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCG 178 (768)
T ss_dssp CTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCT
T ss_pred CCCCCEEECCCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCHHHHHHCCCC
T ss_conf 78899898989857870789678727889998989688267747977856388999898979835885871556643589
Q ss_pred CCCEEEECCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf 99979801733887896100388866699833658998897000499676574424875865577122486666478821
Q 002562 175 ELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQ 254 (907)
Q Consensus 175 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~ 254 (907)
+|++|++++|.+++..+. ..+++|++|++++|.+.+.+|. +..+++|++|++++|.+++.+|..+..+++|++|+++
T Consensus 179 ~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls 255 (768)
T 3rgz_A 179 ELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNIS 255 (768)
T ss_dssp TCCEEECCSSEEESCCBC--TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECC
T ss_pred CCCEEECCCCCCCCCCCC--CCCCCCCEEECCCCCCCCCCCC-CCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECC
T ss_conf 889898978803465784--5478689898928827887711-1269999989794885878165777448888989898
Q ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHCC-CCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC
Q ss_conf 56356879822379999997971587699889232229-98778543436647668983589999998894768978877
Q 002562 255 GNSFQGPIPSSLSKLASLDSLRISDIYNVSSSLDFVMS-LKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQ 333 (907)
Q Consensus 255 ~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~-l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 333 (907)
+|.+.+.+|.. .+++|+.|++++|.+....+..+.. +++|+.|++++|.+.+.+|..++.+++|+.|++++|.+++.
T Consensus 256 ~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ 333 (768)
T 3rgz_A 256 SNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGE 333 (768)
T ss_dssp SSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEE
T ss_pred CCCCCCCCCCC--CCCCCCEEECCCCCCCCCCCHHHHHHCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCC
T ss_conf 88665716724--3687898979178557725888884468688998968967784236775587766778978852573
Q ss_pred CCHH-HHCCCCCCEEECCCCCCCCCCCCCCC---CCCCEEECCCCCCCCCCCHHHC----CCCC-CCCCCCCCCC
Q ss_conf 8432-20899986897647879666898879---9976895337867898970000----2341-1123543213
Q 002562 334 IPRT-LFNIGSLNYLFLGNNSLSGTLPTQKS---ENLQNIDLSYNHLSGPFPSWVT----SNLQ-MNLVANNFTF 399 (907)
Q Consensus 334 ~p~~-l~~l~~L~~L~Ls~N~l~g~~p~~~~---~~L~~L~Ls~N~l~g~iP~~~~----~~l~-l~l~~N~~~~ 399 (907)
+|.. +..+++|++|++++|.+++.+|.... ++|+.|++++|.+++.+|..+. +.++ +++..|.+..
T Consensus 334 ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~ 408 (768)
T 3rgz_A 334 LPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTG 408 (768)
T ss_dssp CCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEE
T ss_pred CCHHHHHCCCCCCEEECCCCCCCCCCCHHHHHHHCCCCEEECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCC
T ss_conf 797887248888788484784376230989863227719986278747876766653324776189897784654
No 5
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=1.00 E-value=1 Score=305.20 Aligned_cols=295 Identities=27% Similarity=0.460 Sum_probs=237.9
Q ss_pred CCCHHHHHHHHHHHHHCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCEEEEEEEEECCCCCCC
Q ss_conf 99989999999999829999-99998788989999987887767889999998030687899960109999943677555
Q 002562 38 TTDPAEVRALNSILQQWDAP-AVPLWNISGEPCSGSALNATDSEFESPNNNPAIVCDCTFDNGATCHITKLRVYALNKKG 116 (907)
Q Consensus 38 ~~~~~~~~aL~~~~~~~~~~-~~~~W~~~~~~C~~~~~w~~~~~~~~~~~~~gv~C~~~~~~~~~~~v~~L~l~~~~l~g 116 (907)
.|.++|+.||++||+++.++ .+.+|+.+.|+|.+ .| .||.|+... ...+++.|++.++.+++
T Consensus 2 ~c~~~~~~aL~~~k~~~~~~~~l~~W~~~~~~C~~--~w------------~gv~C~~~~---~~~~l~~L~L~~~~l~~ 64 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLGNPTTLSSWLPTTDCCNR--TW------------LGVLCDTDT---QTYRVNNLDLSGLNLPK 64 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTCCGGGTTCCTTSCTTTT--CS------------TTEEECCSS---SCCCEEEEEEECCCCSS
T ss_pred CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC--CC------------CCEEECCCC---CCCEEEEEECCCCCCCC
T ss_conf 88989999999999866796202477788997768--78------------625857898---77648899888997468
Q ss_pred --CCCCCCCCCCCCCEEECCC-CCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCHH
Q ss_conf --5880013999998997647-7689988700038856758973266688886634579989997980173388789610
Q 002562 117 --VIPEELVTLQYLTFLKIDQ-NFFTGPLPSFIGNLSRLMLLSVAHNVFSGSVPRELGNLKELTVLSFGNNNFSGTLPPE 193 (907)
Q Consensus 117 --~~p~~l~~l~~L~~L~Ls~-n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~ 193 (907)
.+|..|..+++|++|+|++ |.+.+.+|..|.++++|++|++++|.+++.+|..|.++++|++|++++|.+++.+|..
T Consensus 65 ~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 144 (313)
T 1ogq_A 65 PYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPS 144 (313)
T ss_dssp CEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGG
T ss_pred CCCCCHHHHCCCCCCEEECCCCCCCCCCCCHHHHCCCCCCEEECCCCEECCCCCHHHHCCCCCCEEECCCCCCCCCCCHH
T ss_conf 76569657478888863278888636658966846789997989688467748978837898898969778357727867
Q ss_pred HCCCCCCCEEECCCCCCCCCCCHHHCCCC-CCCEEECCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf 03888666998336589988970004996-76574424875865577122486666478821563568798223799999
Q 002562 194 IGNLAKLEQLYLNSWGAGGEIPSTYAKLR-NMQTLWASDAPFTGKIPDFIGNWTKLKSLRFQGNSFQGPIPSSLSKLASL 272 (907)
Q Consensus 194 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 272 (907)
+..+++|++|++++|.+++.+|..+..++ +|+.|++++|.+++.+|..+..+. |+.|++++|.+.+..|..+..+++|
T Consensus 145 ~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L 223 (313)
T 1ogq_A 145 ISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNT 223 (313)
T ss_dssp GGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCC
T ss_pred HHCCCCCCEEECCCCCCCCCCCHHHHHHHHCCCEEECCCCEEECCCCHHHHCCC-CCEEECCCCCCCCCCCHHHHCCCCC
T ss_conf 845988786889488445818778863453185998859862152776886881-3689791784658377777467888
Q ss_pred CEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCC
Q ss_conf 97971587699889232229987785434366476689835899999988947689788778432208999868976478
Q 002562 273 DSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNN 352 (907)
Q Consensus 273 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 352 (907)
+.|++++ |.+.+.++. +..+++|+.|++++|++++.+|..+..+++|+.|++++|
T Consensus 224 ~~L~L~~------------------------N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 278 (313)
T 1ogq_A 224 QKIHLAK------------------------NSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN 278 (313)
T ss_dssp SEEECCS------------------------SEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSS
T ss_pred CEEECCC------------------------CCEEEECCC-CCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCC
T ss_conf 7898977------------------------721422586-344687898989288216848757866847898988688
Q ss_pred CCCCCCCCCC-CCCCCEEECCCCC
Q ss_conf 7966689887-9997689533786
Q 002562 353 SLSGTLPTQK-SENLQNIDLSYNH 375 (907)
Q Consensus 353 ~l~g~~p~~~-~~~L~~L~Ls~N~ 375 (907)
.+++.+|... .++|+.+++++|+
T Consensus 279 ~l~~~ip~~~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 279 NLCGEIPQGGNLQRFDVSAYANNK 302 (313)
T ss_dssp EEEEECCCSTTGGGSCGGGTCSSS
T ss_pred CCCCCCCCCCCCCCCCHHHHCCCC
T ss_conf 330517988532545867756899
No 6
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=1.00 E-value=1 Score=286.03 Aligned_cols=280 Identities=19% Similarity=0.247 Sum_probs=248.2
Q ss_pred CCCCCCCCCCCCCCCCCEEECCCCCCCCC-----------------CCHHHC--CCCCCCEEECCCCCCCCCCCCCCCCC
Q ss_conf 75555880013999998997647768998-----------------870003--88567589732666888866345799
Q 002562 113 NKKGVIPEELVTLQYLTFLKIDQNFFTGP-----------------LPSFIG--NLSRLMLLSVAHNVFSGSVPRELGNL 173 (907)
Q Consensus 113 ~l~g~~p~~l~~l~~L~~L~Ls~n~l~~~-----------------~p~~l~--~l~~L~~L~Ls~n~l~~~ip~~l~~l 173 (907)
.+++ +|..++++++|++|+|++|.+++. +|..++ ++++|++|+|++|.+.+.+|..|+++
T Consensus 194 ~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l 272 (636)
T 4eco_A 194 NITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKAL 272 (636)
T ss_dssp EEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTC
T ss_pred CCCC-CCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCHHCCCCCHHHHHCCCCCCCEEEECCCCCCCCCHHHHHCC
T ss_conf 7750-787772564787898868823664232212222210010248632200446878889804885776283888349
Q ss_pred CCCCEEEECCCC-CCC-CCCHHHCCC------CCCCEEECCCCCCCCCCCH--HHCCCCCCCEEECCCCCCCCCCCCCCC
Q ss_conf 899979801733-887-896100388------8666998336589988970--004996765744248758655771224
Q 002562 174 KELTVLSFGNNN-FSG-TLPPEIGNL------AKLEQLYLNSWGAGGEIPS--TYAKLRNMQTLWASDAPFTGKIPDFIG 243 (907)
Q Consensus 174 ~~L~~L~Ls~N~-l~~-~~p~~l~~l------~~L~~L~L~~n~l~~~~p~--~l~~l~~L~~L~L~~n~l~~~~p~~l~ 243 (907)
++|++|++++|. +++ .+|..++++ ++|+.|++++|.++ .+|. .+..+++|++|++++|.+++.+| .+.
T Consensus 273 ~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~ 350 (636)
T 4eco_A 273 PEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFG 350 (636)
T ss_dssp SSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCE
T ss_pred CCCCEEECCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEECCCCCCC-CCCCHHHHCCCCCCCEEECCCCCCCCCHH-HHC
T ss_conf 9978897847988766533578875430465788888989799377-66765554257888989690880705166-647
Q ss_pred CCCCCCEEEEECCCCCCCCCCCCCCCCC-CCEEECCCCCCCCCCHHHHCCC--CCCCEEECCCCCCCCCCCCCCC-----
Q ss_conf 8666647882156356879822379999-9979715876998892322299--8778543436647668983589-----
Q 002562 244 NWTKLKSLRFQGNSFQGPIPSSLSKLAS-LDSLRISDIYNVSSSLDFVMSL--KNLTDLSLRNALITGSIPSGIG----- 315 (907)
Q Consensus 244 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~-L~~L~L~~n~~~~~~~~~~~~l--~~L~~L~L~~n~l~~~~p~~l~----- 315 (907)
.+++|+.|++++|.++ .+|..+..+++ |+.|++++|.+. ..+..+..+ ++|+.|++++|.+.+.+|..+.
T Consensus 351 ~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~ 428 (636)
T 4eco_A 351 SEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPT 428 (636)
T ss_dssp EEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSS
T ss_pred CCCCCCEEECCCCCCC-CCCHHHHHHCCCCCEEECCCCCCC-CCCHHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCC
T ss_conf 8898898989899403-033756510236868985298275-44665533345766889774885788652442002201
Q ss_pred --CCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCC----------CCCEEECCCCCCCCCCCHH
Q ss_conf --9999988947689788778432208999868976478796668988799----------9768953378678989700
Q 002562 316 --ELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQKSE----------NLQNIDLSYNHLSGPFPSW 383 (907)
Q Consensus 316 --~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~----------~L~~L~Ls~N~l~g~iP~~ 383 (907)
.+++|+.|++++|++++..+..+..+++|+.|++++|.++ .+|..... +|+.|++++|.++ .+|..
T Consensus 429 ~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~ 506 (636)
T 4eco_A 429 PFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDD 506 (636)
T ss_dssp CCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGG
T ss_pred CCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCC-CCCHHHHCCCCCCCCCCCCCCEEECCCCCCC-CCCHH
T ss_conf 125898888977279668678788715898898989799788-7397884044001221477338989699388-16854
Q ss_pred HC----CCCC-CCCCCCCCCC
Q ss_conf 00----2341-1123543213
Q 002562 384 VT----SNLQ-MNLVANNFTF 399 (907)
Q Consensus 384 ~~----~~l~-l~l~~N~~~~ 399 (907)
+. +.++ ++++.|.+..
T Consensus 507 ~~~~~l~~L~~L~Ls~N~l~~ 527 (636)
T 4eco_A 507 FRATTLPYLVGIDLSYNSFSK 527 (636)
T ss_dssp GSTTTCTTCCEEECCSSCCSS
T ss_pred HHHCCCCCCCEEECCCCCCCC
T ss_conf 534458876989898998877
No 7
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=1.00 E-value=1 Score=285.47 Aligned_cols=315 Identities=20% Similarity=0.178 Sum_probs=276.2
Q ss_pred CCEEECCC----CCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCC
Q ss_conf 98030687----89996010999994367755558800139999989976477689988700038856758973266688
Q 002562 88 PAIVCDCT----FDNGATCHITKLRVYALNKKGVIPEELVTLQYLTFLKIDQNFFTGPLPSFIGNLSRLMLLSVAHNVFS 163 (907)
Q Consensus 88 ~gv~C~~~----~~~~~~~~v~~L~l~~~~l~g~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 163 (907)
..|.|... .+.+....++.|++.++.+++..+..|..+++|++|+|++|.+++..|..|.++++|++|+|++|.++
T Consensus 14 ~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~ 93 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK 93 (477)
T ss_dssp TEEECCSCCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred CEEEECCCCCCCCCCCCCCCCCEEECCCCCCCEECHHHCCCCCCCCEEECCCCCCCEECHHHHHCCCCCCEEECCCCCCC
T ss_conf 87983899867378778999838978799364579767158987899889999437708503208736899889999687
Q ss_pred CCCCCCCCCCCCCCEEEECCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCCCC
Q ss_conf 88663457998999798017338878961003888666998336589988970004996765744248758655771224
Q 002562 164 GSVPRELGNLKELTVLSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDAPFTGKIPDFIG 243 (907)
Q Consensus 164 ~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~ 243 (907)
...+..|.++++|++|+|++|.+.+..+..|.++++|+.|++++|.+.+..+..|..+++|++|++++|.+++..+..+.
T Consensus 94 ~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~ 173 (477)
T 2id5_A 94 LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALS 173 (477)
T ss_dssp SCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHT
T ss_pred CCCCCCCCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCEECHHHCCCCCCCCEEECCCCCCCCCCHHHHC
T ss_conf 43832025877779788999956637965716643599898999955510840035889999897989958614745722
Q ss_pred CCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 86666478821563568798223799999979715876998892322299877854343664766898358999999889
Q 002562 244 NWTKLKSLRFQGNSFQGPIPSSLSKLASLDSLRISDIYNVSSSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTL 323 (907)
Q Consensus 244 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 323 (907)
.+++|+.|++++|.+.+..+..+..+++|+.|++++|......+.......+|+.|++++|.++...+..+..+++|+.|
T Consensus 174 ~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 253 (477)
T 2id5_A 174 HLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFL 253 (477)
T ss_dssp TCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEE
T ss_pred CCCCCCEEECCCCCCCEECHHHCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEE
T ss_conf 26777688699995757386440467556613588886655568332467632579786993355497784271306862
Q ss_pred ECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCC--CCCCCEEECCCCCCCCCCCHHHC--CCCC-CCCCCCCCC
Q ss_conf 476897887784322089998689764787966689887--99976895337867898970000--2341-112354321
Q 002562 324 DLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQK--SENLQNIDLSYNHLSGPFPSWVT--SNLQ-MNLVANNFT 398 (907)
Q Consensus 324 ~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~--~~~L~~L~Ls~N~l~g~iP~~~~--~~l~-l~l~~N~~~ 398 (907)
+|++|.+++..+..+..+++|+.|++++|.+++..|..+ .++|+.|++++|.+++..+..+. +.++ +++..|.+.
T Consensus 254 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 254 NLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp ECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred ECCCCCCCCCCHHHCCCCCCCCEEECCCCCCCEECHHHHCCCCCCCEEECCCCCCCEECHHHCCCCCCCCEEECCCCCCC
T ss_conf 89999378468213415525797789898265589888447635898989999576439867578766678985699855
Q ss_pred CCCC
Q ss_conf 3579
Q 002562 399 FDRS 402 (907)
Q Consensus 399 ~~~~ 402 (907)
+++.
T Consensus 334 c~c~ 337 (477)
T 2id5_A 334 CDCR 337 (477)
T ss_dssp CSGG
T ss_pred CCCC
T ss_conf 7665
No 8
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=1.00 E-value=1 Score=285.17 Aligned_cols=298 Identities=20% Similarity=0.190 Sum_probs=198.0
Q ss_pred CEEEEEEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC-CHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 6010999994367755558800139999989976477689988-700038856758973266688886634579989997
Q 002562 100 ATCHITKLRVYALNKKGVIPEELVTLQYLTFLKIDQNFFTGPL-PSFIGNLSRLMLLSVAHNVFSGSVPRELGNLKELTV 178 (907)
Q Consensus 100 ~~~~v~~L~l~~~~l~g~~p~~l~~l~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~l~~L~~ 178 (907)
...+++.|++.++.+++..+..|.++++|++|+|++|.+.+.+ +..|..+++|++|+|++|.+++..|..|.++++|++
T Consensus 28 l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 107 (455)
T 3v47_A 28 LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEV 107 (455)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCE
T ss_pred CCCCCCEEEECCCCCCCCCHHHHCCCCCCCEEECCCCCCCCEECCCCCCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCE
T ss_conf 88756779806883574786575047655578876885442678451336655787728988537658645257534889
Q ss_pred EEECCCCCCCCCCHH--HCCCCCCCEEECCCCCCCCCCCHH-HCCCCCCCEEECCCCCCCCCCCCCCCCC--CCCCEEEE
Q ss_conf 980173388789610--038886669983365899889700-0499676574424875865577122486--66647882
Q 002562 179 LSFGNNNFSGTLPPE--IGNLAKLEQLYLNSWGAGGEIPST-YAKLRNMQTLWASDAPFTGKIPDFIGNW--TKLKSLRF 253 (907)
Q Consensus 179 L~Ls~N~l~~~~p~~--l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~p~~l~~l--~~L~~L~L 253 (907)
|+|++|.+++..+.. +.++++|++|++++|.+.+..|.. +..+++|++|++++|.+++..+..+..+ .+|+.|++
T Consensus 108 L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l 187 (455)
T 3v47_A 108 LTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRL 187 (455)
T ss_dssp EECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEEC
T ss_pred EECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCCCCCCC
T ss_conf 76878887755447021268120899879999667548002007777466786777865655755631014200010245
Q ss_pred ECCCCCCCCCCC--------CCCCCCCCEEECCCCCCCCCCHHHHCC---CCCCCEEECCCCCCCCCCC----------C
Q ss_conf 156356879822--------379999997971587699889232229---9877854343664766898----------3
Q 002562 254 QGNSFQGPIPSS--------LSKLASLDSLRISDIYNVSSSLDFVMS---LKNLTDLSLRNALITGSIP----------S 312 (907)
Q Consensus 254 ~~n~l~~~~p~~--------l~~l~~L~~L~L~~n~~~~~~~~~~~~---l~~L~~L~L~~n~l~~~~p----------~ 312 (907)
++|.+.+..+.. +..+++|+.|++++|.+....+..+.. .++|+.|++++|...+... .
T Consensus 188 ~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 267 (455)
T 3v47_A 188 SSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNF 267 (455)
T ss_dssp TTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTT
T ss_pred CCCCCCCCCHHHCCCCCCCCCCCCCEEEEEECCCCCCCCCCHHHHHCCCCCCCEEEEEECCCCCCCCCCCHHHHCCCCCC
T ss_conf 56724225311046321343134650126856788665323033421235563556750344343232210220367523
Q ss_pred CCC--CCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCC--CCCCCEEECCCCCCCCCCCHHHC--C
Q ss_conf 589--99999889476897887784322089998689764787966689887--99976895337867898970000--2
Q 002562 313 GIG--ELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQK--SENLQNIDLSYNHLSGPFPSWVT--S 386 (907)
Q Consensus 313 ~l~--~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~--~~~L~~L~Ls~N~l~g~iP~~~~--~ 386 (907)
.+. ..++|+.|++++|.+.+..|..+..+++|+.|++++|.+++..|..+ .++|+.|++++|.+++..|..+. +
T Consensus 268 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 347 (455)
T 3v47_A 268 TFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLD 347 (455)
T ss_dssp TTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCT
T ss_pred CCCCCCCCCCEEEEECCCCCCCCCHHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCC
T ss_conf 33443456732898437620134654505477778888998830456866754865687898989866874966726733
Q ss_pred CCC-CCCCCCCC
Q ss_conf 341-11235432
Q 002562 387 NLQ-MNLVANNF 397 (907)
Q Consensus 387 ~l~-l~l~~N~~ 397 (907)
.++ ++++.|.+
T Consensus 348 ~L~~L~Ls~N~l 359 (455)
T 3v47_A 348 KLEVLDLSYNHI 359 (455)
T ss_dssp TCCEEECCSSCC
T ss_pred CCCEEECCCCCC
T ss_conf 587898989963
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=280.22 Aligned_cols=300 Identities=17% Similarity=0.173 Sum_probs=251.2
Q ss_pred CEEEEEEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC-CHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 6010999994367755558800139999989976477689988-700038856758973266688886634579989997
Q 002562 100 ATCHITKLRVYALNKKGVIPEELVTLQYLTFLKIDQNFFTGPL-PSFIGNLSRLMLLSVAHNVFSGSVPRELGNLKELTV 178 (907)
Q Consensus 100 ~~~~v~~L~l~~~~l~g~~p~~l~~l~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~l~~L~~ 178 (907)
...+++.|++++|.+++..+..|.++++|++|+|++|.+.+.+ |..|.++++|++|+|++|.+.+..|..|.++++|++
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 101 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFE 101 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCC
T ss_pred CCCCCCEEECCCCCCCCCCHHHCCCCCCCEEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCE
T ss_conf 99986888887786783296677662137088678997744419778537877888879899585319767157866587
Q ss_pred EEECCCCCCCCCCHH--HCCCCCCCEEECCCCCCCCCCC-HHHCCCCCCCEEECCCCCCCCCCCCCCCCC--CCCCEEEE
Q ss_conf 980173388789610--0388866699833658998897-000499676574424875865577122486--66647882
Q 002562 179 LSFGNNNFSGTLPPE--IGNLAKLEQLYLNSWGAGGEIP-STYAKLRNMQTLWASDAPFTGKIPDFIGNW--TKLKSLRF 253 (907)
Q Consensus 179 L~Ls~N~l~~~~p~~--l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l--~~L~~L~L 253 (907)
|+|++|.+++.+|.. +.++++|++|+|++|.+.+..+ ..|.++++|++|++++|.+++..+..+..+ ++|+.|++
T Consensus 102 L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L 181 (844)
T 3j0a_A 102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSL 181 (844)
T ss_dssp EECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEE
T ss_pred EECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCEEECCCCCCCEECHHHCCCCCCCCCCEEEC
T ss_conf 01767889734046764556679998889878642325665576388989898989847766788753556775035789
Q ss_pred ECCCCCCCCCCCCCCCCC------CCEEECCCCCCCCCCHHH------------------------------------HC
Q ss_conf 156356879822379999------997971587699889232------------------------------------22
Q 002562 254 QGNSFQGPIPSSLSKLAS------LDSLRISDIYNVSSSLDF------------------------------------VM 291 (907)
Q Consensus 254 ~~n~l~~~~p~~l~~l~~------L~~L~L~~n~~~~~~~~~------------------------------------~~ 291 (907)
+.|.+.+..+..+..+.+ |+.|++++|.+....+.. +.
T Consensus 182 ~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~ 261 (844)
T 3j0a_A 182 AANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFA 261 (844)
T ss_dssp CCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTT
T ss_pred CCCCCCCCCCCCHHHCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCCCCCCHHHHH
T ss_conf 78866655455332237722357400796578868656778887642744100112121223466444566889855652
Q ss_pred C--CCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCC--CCCCC
Q ss_conf 9--9877854343664766898358999999889476897887784322089998689764787966689887--99976
Q 002562 292 S--LKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQK--SENLQ 367 (907)
Q Consensus 292 ~--l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~~--~~~L~ 367 (907)
+ .++|+.|++++|.+.+..+..+..+++|+.|+|++|++.+..+..+..+++|+.|++++|.+++..|..+ .++|+
T Consensus 262 ~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 341 (844)
T 3j0a_A 262 GLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVA 341 (844)
T ss_dssp TTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCC
T ss_pred CCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCC
T ss_conf 55547861898979945515863452589999998979818987968836888999898989978851878846899999
Q ss_pred EEECCCCCCCCCCCHHHC--CCCC-CCCCCCCCCC
Q ss_conf 895337867898970000--2341-1123543213
Q 002562 368 NIDLSYNHLSGPFPSWVT--SNLQ-MNLVANNFTF 399 (907)
Q Consensus 368 ~L~Ls~N~l~g~iP~~~~--~~l~-l~l~~N~~~~ 399 (907)
.|++++|.+++..+..+. +.++ |+++.|.+..
T Consensus 342 ~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~ 376 (844)
T 3j0a_A 342 YIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT 376 (844)
T ss_dssp EEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC
T ss_pred EEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCC
T ss_conf 89898998776286661378889998898997786
No 10
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=1.00 E-value=1 Score=273.71 Aligned_cols=298 Identities=22% Similarity=0.179 Sum_probs=214.1
Q ss_pred CCEEEEEEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 96010999994367755558800139999989976477689988700038856758973266688886634579989997
Q 002562 99 GATCHITKLRVYALNKKGVIPEELVTLQYLTFLKIDQNFFTGPLPSFIGNLSRLMLLSVAHNVFSGSVPRELGNLKELTV 178 (907)
Q Consensus 99 ~~~~~v~~L~l~~~~l~g~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ip~~l~~l~~L~~ 178 (907)
.....++.|++.++.+++..+..|..+++|++|+|++|.+.+..|..|.++++|++|+|++|.+++..|..|.++++|++
T Consensus 30 ~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 109 (606)
T 3t6q_A 30 TLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKH 109 (606)
T ss_dssp TSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCE
T ss_pred CCCCCCCEEECCCCCCCCCCHHHHCCCCCCEEEECCCCCCCEECHHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCE
T ss_conf 78986758981587347179667256766528978898355248511368433676448898565458655234421537
Q ss_pred EEECCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCC--EEEEECC
Q ss_conf 98017338878961003888666998336589988970004996765744248758655771224866664--7882156
Q 002562 179 LSFGNNNFSGTLPPEIGNLAKLEQLYLNSWGAGGEIPSTYAKLRNMQTLWASDAPFTGKIPDFIGNWTKLK--SLRFQGN 256 (907)
Q Consensus 179 L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~--~L~L~~n 256 (907)
|++++|.+++..+..+.++++|++|++++|.+.+.....+..+++|++|++++|.+++..+..++.+++|+ .|++++|
T Consensus 110 L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n 189 (606)
T 3t6q_A 110 LFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGN 189 (606)
T ss_dssp EECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTC
T ss_pred EECCCCCCCCCCCCHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHCCCCEEEEECCCC
T ss_conf 65212676657810122378223898879834114765456876568777656844554965633221564038966798
Q ss_pred CCCCCCCCCCCCCCCCCEEEC----------------------------------------------------CCCCCCC
Q ss_conf 356879822379999997971----------------------------------------------------5876998
Q 002562 257 SFQGPIPSSLSKLASLDSLRI----------------------------------------------------SDIYNVS 284 (907)
Q Consensus 257 ~l~~~~p~~l~~l~~L~~L~L----------------------------------------------------~~n~~~~ 284 (907)
.+.+..|..+.. .+|+.|++ ++|.+..
T Consensus 190 ~l~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~ 268 (606)
T 3t6q_A 190 DIAGIEPGAFDS-AVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFN 268 (606)
T ss_dssp CCCEECTTTTTT-CEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSS
T ss_pred CCCCCCHHHHHH-CCCCCCCCCCCHHHHHHHHHCCCCCHHHEECHHHCCCCCCCCCHHHHCHHHCCCEEEEEEECCCCCC
T ss_conf 147548667300-1001355677266777765133564422002011026412268667430320750599944576585
Q ss_pred CCHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCC---
Q ss_conf 89232229987785434366476689835899999988947689788778432208999868976478796668988---
Q 002562 285 SSLDFVMSLKNLTDLSLRNALITGSIPSGIGELQNLQTLDLSFNNLTGQIPRTLFNIGSLNYLFLGNNSLSGTLPTQ--- 361 (907)
Q Consensus 285 ~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~~p~~--- 361 (907)
.....+..+++|+.|++++|.++ .+|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+.+|..
T Consensus 269 ~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 347 (606)
T 3t6q_A 269 ISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLE 347 (606)
T ss_dssp CCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTT
T ss_pred CCHHHHCCCCCCCEEECCCCCCC-CCCHHHCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHH
T ss_conf 57777445667888956288267-77821416546888977168768676023301576898889899744434624550
Q ss_pred CCCCCCEEECCCCCCCCCC--CHHHC--CCCC-CCCCCCCCC
Q ss_conf 7999768953378678989--70000--2341-112354321
Q 002562 362 KSENLQNIDLSYNHLSGPF--PSWVT--SNLQ-MNLVANNFT 398 (907)
Q Consensus 362 ~~~~L~~L~Ls~N~l~g~i--P~~~~--~~l~-l~l~~N~~~ 398 (907)
..++|+.|++++|.+++.. |..+. +.++ ++++.|.+.
T Consensus 348 ~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~ 389 (606)
T 3t6q_A 348 NLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPL 389 (606)
T ss_dssp TCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCE
T ss_pred CCCCCCEEECCCCCCCCCCCCCHHCCCCCCCCEEECCCCCCC
T ss_conf 667589887889966645675221056788898989899677
Done!