BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 002563
         (907 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3DAO|A Chain A, Crystal Structure Of A Putative Phosphatse (Eubrec_1417)
           From Eubacterium Rectale At 1.80 A Resolution
 pdb|3DAO|B Chain B, Crystal Structure Of A Putative Phosphatse (Eubrec_1417)
           From Eubacterium Rectale At 1.80 A Resolution
          Length = 283

 Score = 30.0 bits (66), Expect = 5.6,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 14/87 (16%)

Query: 151 EGSVEAIRTALKKLDVDGSSIEDAKAVCEPEVLSQIFKWKNKLKVYLAPFLHGMRYTSFG 210
           +G ++ I T     D+DG+ ++D   + +PE  S I +  +K  +++            G
Sbjct: 18  QGXIKLIAT-----DIDGTLVKDGSLLIDPEYXSVIDRLIDKGIIFV---------VCSG 63

Query: 211 RHFTKVDKLQAIVDKLHWYVNDGDMIV 237
           R F+   KL A +     Y+ DG  +V
Sbjct: 64  RQFSSEFKLFAPIKHKLLYITDGGTVV 90


>pdb|1VFH|A Chain A, Crystal Structure Of Alanine Racemase From D-cycloserine
           Producing Streptomyces Lavendulae
 pdb|1VFS|A Chain A, Crystal Structure Of D-Cycloserine-Bound Form Of Alanine
           Racemase From D-Cycloserine-Producing Streptomyces
           Lavendulae
 pdb|1VFS|B Chain B, Crystal Structure Of D-Cycloserine-Bound Form Of Alanine
           Racemase From D-Cycloserine-Producing Streptomyces
           Lavendulae
 pdb|1VFT|A Chain A, Crystal Structure Of L-Cycloserine-Bound Form Of Alanine
           Racemase From D-Cycloserine-Producing Streptomyces
           Lavendulae
 pdb|1VFT|B Chain B, Crystal Structure Of L-Cycloserine-Bound Form Of Alanine
           Racemase From D-Cycloserine-Producing Streptomyces
           Lavendulae
          Length = 386

 Score = 29.6 bits (65), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 16/62 (25%), Positives = 28/62 (45%)

Query: 692 SPAKVIAKSSLEDHSSKSIDIPSQTGFGSDYQHHEPTRSSSHIGTTYYGTQAGIPNDMGS 751
           +PA++  + ++   +S ++      G G  Y HH  T S +H+     G   GIP +   
Sbjct: 240 TPAQLGLRPAMTLRASLALVKTVPAGHGVSYGHHYVTESETHLALVPAGYADGIPRNASG 299

Query: 752 YG 753
            G
Sbjct: 300 RG 301


>pdb|3OQ3|B Chain B, Structural Basis Of Type-I Interferon Sequestration By A
           Poxvirus Decoy Receptor
          Length = 329

 Score = 29.6 bits (65), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 22/88 (25%), Positives = 42/88 (47%), Gaps = 5/88 (5%)

Query: 224 DKLHWYVNDGDMIVDFCCGANDFSCLM--KKKLDETGKNCLYKNYDILPAKNDFNFEKRD 281
           + + WY N+ ++I+D    +     L+    +L+++G+   Y +YD +  KND    +  
Sbjct: 159 NNITWYKNNQELIIDGTKYSQSGQNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCK 218

Query: 282 WMTVEPKELAPGSRLIMGLNPPFGVKAG 309
            +TV P +     R  + L+P   V  G
Sbjct: 219 ILTVIPSQ---DHRFKLILDPKINVTIG 243


>pdb|3HJE|A Chain A, Crystal Structure Of Sulfolobus Tokodaii Hypothetical
           Maltooligosyl Trehalose Synthase
          Length = 704

 Score = 29.6 bits (65), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 32/130 (24%), Positives = 54/130 (41%), Gaps = 19/130 (14%)

Query: 134 AYASKSAVDKAITLGK-VEGSVEAIRTALKKLDVDGSSIEDAKAVCEPEVLSQIFKWKNK 192
           +Y    AV++ I + + +E   E   + +   +VDG  I+    + +PE    + + KNK
Sbjct: 183 SYRRFFAVNELIAVRQELEWVFEDSHSKILSFEVDGYRIDHIDGLFKPE--EYLRRLKNK 240

Query: 193 LKVYLAPFLHGMRYTSFGRHFTKVDKLQAIVDKLHWYVNDGDMIVDFCCGANDFSCLMKK 252
           +                G     V+K+ +I +KL W   DG    DF   +N      + 
Sbjct: 241 I----------------GNKHIFVEKILSIGEKLRWDFIDGTTGYDFLNYSNLLFTDNED 284

Query: 253 KLDETGKNCL 262
           K+ E  KN L
Sbjct: 285 KMTEIYKNIL 294


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.314    0.131    0.388 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,286,865
Number of Sequences: 62578
Number of extensions: 1180460
Number of successful extensions: 1901
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1900
Number of HSP's gapped (non-prelim): 6
length of query: 907
length of database: 14,973,337
effective HSP length: 108
effective length of query: 799
effective length of database: 8,214,913
effective search space: 6563715487
effective search space used: 6563715487
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 56 (26.2 bits)