BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 002563
         (907 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9RFD5|BCHH_RHOS4 Magnesium-chelatase subunit H OS=Rhodobacter sphaeroides (strain ATCC
            17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=bchH PE=3 SV=1
          Length = 1193

 Score = 36.6 bits (83), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 29/98 (29%), Positives = 50/98 (51%), Gaps = 8/98 (8%)

Query: 29   GNVKSLSVQVDRSSSVDSKKTSLGERLYAAFVTEGTEQTKF--GKQDNSDRETSRTVTVK 86
            G V++L  Q+    +++++  SL  + Y   +  G E  +    +  N+   ++ T  V+
Sbjct: 1066 GTVRTLKDQI----ALETRARSLNPKYYEGLLKHGAEGVRQIEAQVTNTLGWSATTQQVE 1121

Query: 87   PLRKKLISELPSLDEDSKRRLSSLMKDAASSVRMEEIL 124
            P   + +SE   LDE  +RRL+ L  +A  SVRM E L
Sbjct: 1122 PWVYQRLSETFVLDEAMRRRLAELNPEA--SVRMAERL 1157


>sp|Q65S78|AROA_MANSM 3-phosphoshikimate 1-carboxyvinyltransferase OS=Mannheimia
           succiniciproducens (strain MBEL55E) GN=aroA PE=3 SV=1
          Length = 433

 Score = 35.8 bits (81), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 1/46 (2%)

Query: 160 ALKKLDVDGSSIEDAKAVCEPEVLSQIFKWKNKLKVYLAPFLHGMR 205
           ALK+L V+ S  ED K+VCE + L + F W+N L ++L      MR
Sbjct: 56  ALKQLGVNYSLSED-KSVCEVQGLGKAFAWQNGLALFLGNAGTAMR 100


>sp|A6VMU5|AROA_ACTSZ 3-phosphoshikimate 1-carboxyvinyltransferase OS=Actinobacillus
           succinogenes (strain ATCC 55618 / 130Z) GN=aroA PE=3
           SV=1
          Length = 433

 Score = 34.7 bits (78), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 154 VEAIRTALKKLDVDGSSIEDAKAVCEPEVLSQIFKWKNKLKVYLAPFLHGMR 205
           V  +  ALK+L V   ++ D K VCE + L + F+W+N L ++L      MR
Sbjct: 50  VRHMLNALKRLGVS-YTLSDDKTVCEVQGLGRAFEWQNGLSLFLGNAGTAMR 100


>sp|Q3ED65|MENG_ARATH 2-phytyl-1,4-beta-naphthoquinone methyltransferase, chloroplastic
           OS=Arabidopsis thaliana GN=MENG PE=1 SV=2
          Length = 261

 Score = 34.7 bits (78), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 12/27 (44%), Positives = 19/27 (70%)

Query: 233 GDMIVDFCCGANDFSCLMKKKLDETGK 259
           GD ++D CCG+ D + L+ +K+  TGK
Sbjct: 74  GDYVLDLCCGSGDLAFLLSEKVGSTGK 100


>sp|Q04570|AROA_PASMU 3-phosphoshikimate 1-carboxyvinyltransferase OS=Pasteurella
           multocida (strain Pm70) GN=aroA PE=3 SV=2
          Length = 440

 Score = 33.9 bits (76), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 8/85 (9%)

Query: 128 KIPSTHAYASKSAVDKAITLGKVEGS-------VEAIRTALKKLDVDGSSIEDAKAVCEP 180
           ++P + + ++++ +  A+  GK   +       V  +  ALK+L V     ED K+VCE 
Sbjct: 21  RLPGSKSLSNRALLLSALAKGKTTLTNLLDSDDVRHMLNALKELGVTYQLSED-KSVCEI 79

Query: 181 EVLSQIFKWKNKLKVYLAPFLHGMR 205
           E L + F+W++ L ++L      MR
Sbjct: 80  EGLGRAFEWQSGLALFLGNAGTAMR 104


>sp|P21299|PHOSP_SYNV Phosphoprotein OS=Sonchus yellow net virus GN=P PE=2 SV=1
          Length = 286

 Score = 33.5 bits (75), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 46/122 (37%), Gaps = 33/122 (27%)

Query: 402 GHISRPQSRTQMERNCYETHAV-DHPKEEGQGDAS-MLIDLPLQINVTKELRNEAREDDK 459
           GH+S   +   +E  CY   A  D    + + DAS   +D+ L+I +    R+EA E   
Sbjct: 112 GHVSVVMTLPFLEEGCYNIGACFDGRLSKSRSDASHYAVDVSLEIYLKSLSRDEAEEQIS 171

Query: 460 AG-------------FPDNATEGGGES--------------SHGHGD----NQSGKTSRK 488
            G             F D      GES               HGHGD      SGK  RK
Sbjct: 172 KGTSVYPFKINHPTYFEDETDTSDGESLSGRASSDDGPEDGGHGHGDKNNEKNSGKVVRK 231

Query: 489 RK 490
           RK
Sbjct: 232 RK 233


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.314    0.131    0.388 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 364,789,057
Number of Sequences: 539616
Number of extensions: 16838096
Number of successful extensions: 33112
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 79
Number of HSP's that attempted gapping in prelim test: 32905
Number of HSP's gapped (non-prelim): 229
length of query: 907
length of database: 191,569,459
effective HSP length: 127
effective length of query: 780
effective length of database: 123,038,227
effective search space: 95969817060
effective search space used: 95969817060
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 66 (30.0 bits)