BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002564
(907 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 67.0 bits (162), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 83/190 (43%), Gaps = 18/190 (9%)
Query: 427 VKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN 486
V +S GNFAV + + +NLQ+G + +L H +V+ VA N
Sbjct: 70 VSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFL--------GHTKDVLSVAFSPDN 121
Query: 487 TLMISAGYHGDIKVWDFKG-------RDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVI 539
++S G ++VW+ KG R + W S V+ ++ + D ++
Sbjct: 122 RQIVSGGRDNALRVWNVKGECMHTLSRGAHTDW---VSCVRFSPSLDAPVIVSGGWDNLV 178
Query: 540 RLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDV 599
+++D+ R+V +GHT+ +T S DG SS DG R+WD+ + +
Sbjct: 179 KVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMAAGA 238
Query: 600 SITALSLSPN 609
I + SPN
Sbjct: 239 PINQICFSPN 248
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/214 (23%), Positives = 93/214 (43%), Gaps = 16/214 (7%)
Query: 152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGXXXXXXXXXPALDVVAVGCSDGKIHVHNVR 211
N + S + SL+LWN+ + Y+F G P + G D + V NV+
Sbjct: 80 NFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVK 139
Query: 212 YDEELVTFTHSMRGA----VTALAFS-SDGQPLLASGASSGVISIWNLEKRRLQSVIREA 266
E + T + RGA V+ + FS S P++ SG ++ +W+L RL + ++
Sbjct: 140 -GECMHTLS---RGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLK-G 194
Query: 267 HDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANG 326
H N + S+ + + S+ D ++W D T G+ L +G +C ++
Sbjct: 195 HTNYVTSVTVSPDGSLCASSDKDGVARLW--DLTKGEA-LSEMAAGAPINQIC---FSPN 248
Query: 327 RHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKR 360
R+ + A ++ R+F + EL+ H +
Sbjct: 249 RYWMCAATEKGIRIFDLENKDIIVELAPEHQGSK 282
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 9/92 (9%)
Query: 252 WNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRS 311
+ L RRL E H + + N +SAS D+S+++W + L
Sbjct: 56 YGLPDRRL-----EGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFL---- 106
Query: 312 GHSAPPLCIRFYANGRHILSAGQDRAFRLFSV 343
GH+ L + F + R I+S G+D A R+++V
Sbjct: 107 GHTKDVLSVAFSPDNRQIVSGGRDNALRVWNV 138
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 24/36 (66%)
Query: 551 RKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDV 586
R+ EGH+ ++D S +G + +S+ D SLR+W++
Sbjct: 61 RRLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNL 96
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 65/154 (42%), Gaps = 21/154 (13%)
Query: 444 AGGW---IERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKV 500
+GGW ++ ++L +G D+ +NY V V +L S+ G ++
Sbjct: 171 SGGWDNLVKVWDLATGRL---VTDLKGHTNY-----VTSVTVSPDGSLCASSDKDGVARL 222
Query: 501 WDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDV----VALRMVRKFEGH 556
WD + S G + +I + N A + IR+FD+ + + + + +G
Sbjct: 223 WDLTKGEALSEMAAGAPINQICFSP-NRYWMCAATEKGIRIFDLENKDIIVELAPEHQG- 280
Query: 557 TDRITDFC----FSEDGKWLLSSGMDGSLRIWDV 586
+ +I C +S DG L S D +R+W V
Sbjct: 281 SKKIVPECVSIAWSADGSTLYSGYTDNVIRVWGV 314
Score = 30.0 bits (66), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 28/148 (18%), Positives = 62/148 (41%), Gaps = 10/148 (6%)
Query: 154 VIVGSQEGSLQLWNISTKKKLYEFKGWGXXXXXXXXXPALDVVAVGCSDGKIHVHNVRYD 213
++ G + +++W+++T + + + KG P + A DG + ++
Sbjct: 169 IVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKG 228
Query: 214 EELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNA--- 270
E L + + + FS + + A A+ I I++LE + + + H +
Sbjct: 229 EALSEM--AAGAPINQICFSPNRYWMCA--ATEKGIRIFDLENKDIIVELAPEHQGSKKI 284
Query: 271 ---IISLHFFANEPVLMSASADNSIKMW 295
+S+ + A+ L S DN I++W
Sbjct: 285 VPECVSIAWSADGSTLYSGYTDNVIRVW 312
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 73/293 (24%), Positives = 124/293 (42%), Gaps = 34/293 (11%)
Query: 63 ASYRDYTFAAYGNHIAVVKRAHQVATWSR----------HSAKVNLLLLF--GEHILSID 110
+S R F+ G IA V W+R HS+ VN + G+ I S
Sbjct: 222 SSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVNGVAFRPDGQTIASAS 281
Query: 111 IDGNMFIWAFKG-IEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNIS 169
D + +W G + + L GH PD + S + +++LWN
Sbjct: 282 DDKTVKLWNRNGQLLQTL--TGH----SSSVWGVAFSPDGQT--IASASDDKTVKLWN-R 332
Query: 170 TKKKLYEFKGWGXXXXXXXXXPALDVVAVGCSDGKIHVHNVRYDEELVTFT-HSMRGAVT 228
+ L G P +A D + + N R + L T T HS +V
Sbjct: 333 NGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSS--SVR 389
Query: 229 ALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASA 288
+AFS DGQ +AS + + +WN + LQ++ H +++ + F ++ + SAS
Sbjct: 390 GVAFSPDGQ-TIASASDDKTVKLWNRNGQLLQTLT--GHSSSVWGVAFSPDDQTIASASD 446
Query: 289 DNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLF 341
D ++K+W + + +LL+ +GHS+ + F +G+ I SA D+ +L+
Sbjct: 447 DKTVKLW-----NRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW 494
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 89/189 (47%), Gaps = 13/189 (6%)
Query: 154 VIVGSQEGSLQLWNISTKKKLYEFKGWGXXXXXXXXXPALDVVAVGCSDGKIHVHNVRYD 213
+ S + +++LWN + L G P +A D + + N R
Sbjct: 72 IASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNG 129
Query: 214 EELVTFT-HSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAII 272
+ L T T HS +V +AFS DGQ +AS + + +WN + LQ++ H +++
Sbjct: 130 QLLQTLTGHSS--SVWGVAFSPDGQ-TIASASDDKTVKLWNRNGQLLQTLT--GHSSSVW 184
Query: 273 SLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSA 332
+ F + + SAS D ++K+W + + +LL+ +GHS+ + F +G+ I SA
Sbjct: 185 GVAFSPDGQTIASASDDKTVKLW-----NRNGQLLQTLTGHSSSVRGVAFSPDGQTIASA 239
Query: 333 GQDRAFRLF 341
D+ +L+
Sbjct: 240 SDDKTVKLW 248
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 77/152 (50%), Gaps = 12/152 (7%)
Query: 191 PALDVVAVGCSDGKIHVHNVRYDEELVTFT-HSMRGAVTALAFSSDGQPLLASGASSGVI 249
P +A D + + N R + L T T HS +V +AFS DGQ +AS + +
Sbjct: 26 PDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSS--SVWGVAFSPDGQ-TIASASDDKTV 81
Query: 250 SIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRF 309
+WN + LQ++ H +++ + F + + SAS D ++K+W + + +LL+
Sbjct: 82 KLWNRNGQLLQTLT--GHSSSVRGVAFSPDGQTIASASDDKTVKLW-----NRNGQLLQT 134
Query: 310 RSGHSAPPLCIRFYANGRHILSAGQDRAFRLF 341
+GHS+ + F +G+ I SA D+ +L+
Sbjct: 135 LTGHSSSVWGVAFSPDGQTIASASDDKTVKLW 166
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 84/171 (49%), Gaps = 4/171 (2%)
Query: 460 GSYLDMSERSNY-AHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSL 518
GS++ + ER+ AH+ V GVA + SA +K+W+ G+ L++ S+
Sbjct: 1 GSHMGVKERNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSV 60
Query: 519 VKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD 578
+ + +A+ +DD ++L++ ++++ GH+ + FS DG+ + S+ D
Sbjct: 61 WGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVRGVAFSPDGQTIASASDD 119
Query: 579 GSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNR 629
++++W+ S+ ++ SP+ +A+A D+ V LW NR
Sbjct: 120 KTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKT-VKLW-NR 168
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 76/158 (48%), Gaps = 3/158 (1%)
Query: 472 AHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLA 531
H+ V GVA + SA +K+W+ G+ L++ S+ + + + +A
Sbjct: 383 GHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDDQTIA 442
Query: 532 TVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQ 591
+ +DD ++L++ ++++ GH+ + FS DG+ + S+ D ++++W+
Sbjct: 443 SASDDKTVKLWNRNG-QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLL 501
Query: 592 IDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNR 629
S+ ++ SP+ +A+A D+ V LW NR
Sbjct: 502 QTLTGHSSSVRGVAFSPDGQTIASASDDKT-VKLW-NR 537
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 75/158 (47%), Gaps = 3/158 (1%)
Query: 472 AHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLA 531
H+ V GVA + SA +K+W+ G+ L++ S+ + + +A
Sbjct: 301 GHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIA 360
Query: 532 TVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQ 591
+ +DD ++L++ ++++ GH+ + FS DG+ + S+ D ++++W+
Sbjct: 361 SASDDKTVKLWNRNG-QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLL 419
Query: 592 IDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNR 629
S+ ++ SP+ +A+A D+ V LW NR
Sbjct: 420 QTLTGHSSSVWGVAFSPDDQTIASASDDKT-VKLW-NR 455
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 75/158 (47%), Gaps = 3/158 (1%)
Query: 472 AHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLA 531
H+ V GVA + SA +K+W+ G+ L++ S+ + + +A
Sbjct: 219 GHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVNGVAFRPDGQTIA 278
Query: 532 TVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQ 591
+ +DD ++L++ ++++ GH+ + FS DG+ + S+ D ++++W+
Sbjct: 279 SASDDKTVKLWNRNG-QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHL 337
Query: 592 IDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNR 629
S+ ++ SP+ +A+A D+ V LW NR
Sbjct: 338 QTLTGHSSSVWGVAFSPDGQTIASASDDKT-VKLW-NR 373
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 75/158 (47%), Gaps = 3/158 (1%)
Query: 472 AHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLA 531
H+ V GVA + SA +K+W+ G+ L++ S+ + + +A
Sbjct: 96 GHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIA 155
Query: 532 TVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQ 591
+ +DD ++L++ ++++ GH+ + FS DG+ + S+ D ++++W+
Sbjct: 156 SASDDKTVKLWNRNG-QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLL 214
Query: 592 IDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNR 629
S+ ++ SP+ +A+A D+ V LW NR
Sbjct: 215 QTLTGHSSSVRGVAFSPDGQTIASASDDKT-VKLW-NR 250
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/158 (22%), Positives = 74/158 (46%), Gaps = 3/158 (1%)
Query: 472 AHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLA 531
H+ V GVA + SA +K+W+ G+ L++ S+ + + +A
Sbjct: 178 GHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIA 237
Query: 532 TVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQ 591
+ +DD ++L++ ++++ GH+ + F DG+ + S+ D ++++W+
Sbjct: 238 SASDDKTVKLWNRNG-QLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQLL 296
Query: 592 IDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNR 629
S+ ++ SP+ +A+A D+ V LW NR
Sbjct: 297 QTLTGHSSSVWGVAFSPDGQTIASASDDKT-VKLW-NR 332
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 47/87 (54%), Gaps = 10/87 (11%)
Query: 255 EKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHS 314
E+ RL EAH +++ + F + + SAS D ++K+W + + +LL+ +GHS
Sbjct: 8 ERNRL-----EAHSSSVRGVAFSPDGQTIASASDDKTVKLW-----NRNGQLLQTLTGHS 57
Query: 315 APPLCIRFYANGRHILSAGQDRAFRLF 341
+ + F +G+ I SA D+ +L+
Sbjct: 58 SSVWGVAFSPDGQTIASASDDKTVKLW 84
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/114 (21%), Positives = 57/114 (50%), Gaps = 1/114 (0%)
Query: 472 AHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLA 531
H+ V GVA + SA +K+W+ G+ L++ S+ + + +A
Sbjct: 465 GHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIA 524
Query: 532 TVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWD 585
+ +DD ++L++ ++++ GH+ + FS DG+ + S+ D ++++W+
Sbjct: 525 SASDDKTVKLWNRNG-QLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 66/143 (46%), Gaps = 8/143 (5%)
Query: 154 VIVGSQEGSLQLWNISTKKKLYEFKGWGXXXXXXXXXPALDVVAVGCSDGKIHVHNVRYD 213
+ S + +++LWN + L G P +A D + + N R
Sbjct: 441 IASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNG 498
Query: 214 EELVTFT-HSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAII 272
+ L T T HS +V +AFS DGQ +AS + + +WN + LQ++ H +++
Sbjct: 499 QLLQTLTGHSS--SVRGVAFSPDGQ-TIASASDDKTVKLWNRNGQLLQTLT--GHSSSVW 553
Query: 273 SLHFFANEPVLMSASADNSIKMW 295
+ F + + SAS+D ++K+W
Sbjct: 554 GVAFSPDGQTIASASSDKTVKLW 576
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/235 (23%), Positives = 102/235 (43%), Gaps = 16/235 (6%)
Query: 123 IEENLAPVGHVKLDDKFT------PTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYE 176
I N+ PVG +++ + T MH T ++ SQ+G L +W+ T K++
Sbjct: 33 ITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHA 92
Query: 177 FKGWGXXXXXXXXXPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALA---FS 233
P+ + VA G D ++N++ E V + + G L+ F
Sbjct: 93 IPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFL 152
Query: 234 SDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIK 293
D Q + +SG ++ ++W++E + + H ++SL + + +S + D S K
Sbjct: 153 DDNQIVTSSGDTT--CALWDIETGQQTTTF-TGHTGDVMSLSLAPDTRLFVSGACDASAK 209
Query: 294 MWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQ 348
+W D +G R + +GH + I F+ NG + D RLF + DQ+
Sbjct: 210 LW--DVREGMCR--QTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQE 260
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 72/152 (47%), Gaps = 5/152 (3%)
Query: 145 MHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGXXXXXXXXXPALDVVAVGCSDGK 204
+ PDT L + G+ + S +LW++ F G P + A G D
Sbjct: 192 LAPDTRL--FVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDAT 249
Query: 205 IHVHNVRYDEELVTFTH-SMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVI 263
+ ++R D+EL+T++H ++ +T+++FS G+ LLA G ++W+ K V+
Sbjct: 250 CRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLA-GYDDFNCNVWDALKADRAGVL 308
Query: 264 REAHDNAIISLHFFANEPVLMSASADNSIKMW 295
HDN + L + + + S D+ +K+W
Sbjct: 309 -AGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 66/151 (43%), Gaps = 4/151 (2%)
Query: 473 HNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNG-LLA 531
H G+V+ ++ L +S K+WD + + + S + + NG A
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242
Query: 532 TVADDLVIRLFDVVALR--MVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILA 589
T +DD RLFD+ A + M + IT FS+ G+ LL+ D + +WD + A
Sbjct: 243 TGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA 302
Query: 590 RQIDAIHV-DVSITALSLSPNMDVLATAHVD 619
+ + D ++ L ++ + +AT D
Sbjct: 303 DRAGVLAGHDNRVSCLGVTDDGMAVATGSWD 333
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Query: 545 VALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS-ITA 603
+ +R R GH +I + D + L+S+ DG L IWD ++ AI + S +
Sbjct: 43 IQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMT 102
Query: 604 LSLSPNMDVLATAHVDQ 620
+ +P+ + +A +D
Sbjct: 103 CAYAPSGNYVACGGLDN 119
Score = 33.9 bits (76), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 38/170 (22%), Positives = 75/170 (44%), Gaps = 14/170 (8%)
Query: 466 SERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRD------LKSRWEVGCSLV 519
+ R+ H ++ + + + L++SA G + +WD + L+S W + C+
Sbjct: 47 TRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYA 106
Query: 520 KIVYHRVNGLLATVAD--DLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGM 577
+ G L + +L R +V R+ R+ GHT ++ F +D + + SSG
Sbjct: 107 PSGNYVACGGLDNICSIYNLKTREGNV---RVSRELAGHTGYLSCCRFLDDNQIVTSSG- 162
Query: 578 DGSLRIWDVILARQIDAIHVDVS-ITALSLSPNMDVLATAHVDQNGVYLW 626
D + +WD+ +Q + +LSL+P+ + + D + LW
Sbjct: 163 DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDAS-AKLW 211
Score = 33.1 bits (74), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 3/92 (3%)
Query: 530 LATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVI-- 587
+ T + D L+D+ + F GHT + + D + +S D S ++WDV
Sbjct: 157 IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG 216
Query: 588 LARQIDAIHVDVSITALSLSPNMDVLATAHVD 619
+ RQ H + I A+ PN + AT D
Sbjct: 217 MCRQTFTGH-ESDINAICFFPNGNAFATGSDD 247
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/70 (21%), Positives = 31/70 (44%)
Query: 516 CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSS 575
C + + + + LL DD ++D + GH +R++ ++DG + +
Sbjct: 271 CGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATG 330
Query: 576 GMDGSLRIWD 585
D L+IW+
Sbjct: 331 SWDSFLKIWN 340
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 42/96 (43%), Gaps = 3/96 (3%)
Query: 529 LLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVIL 588
L + A D +L+DV + F GH I CF +G + D + R++D+
Sbjct: 198 LFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRA 257
Query: 589 ARQIDAIHVD---VSITALSLSPNMDVLATAHVDQN 621
+++ D IT++S S + +L + D N
Sbjct: 258 DQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFN 293
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/235 (23%), Positives = 102/235 (43%), Gaps = 16/235 (6%)
Query: 123 IEENLAPVGHVKLDDKFT------PTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYE 176
I N+ PVG +++ + T MH T ++ SQ+G L +W+ T K++
Sbjct: 33 ITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHA 92
Query: 177 FKGWGXXXXXXXXXPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALA---FS 233
P+ + VA G D ++N++ E V + + G L+ F
Sbjct: 93 IPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFL 152
Query: 234 SDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIK 293
D Q + +SG ++ ++W++E + + H ++SL + + +S + D S K
Sbjct: 153 DDNQIVTSSGDTT--CALWDIETGQQTTTF-TGHTGDVMSLSLAPDTRLFVSGACDASAK 209
Query: 294 MWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQ 348
+W D +G R + +GH + I F+ NG + D RLF + DQ+
Sbjct: 210 LW--DVREGMCR--QTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQE 260
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 72/152 (47%), Gaps = 5/152 (3%)
Query: 145 MHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGXXXXXXXXXPALDVVAVGCSDGK 204
+ PDT L + G+ + S +LW++ F G P + A G D
Sbjct: 192 LAPDTRL--FVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDAT 249
Query: 205 IHVHNVRYDEELVTFTH-SMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVI 263
+ ++R D+EL+T++H ++ +T+++FS G+ LLA G ++W+ K V+
Sbjct: 250 CRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLA-GYDDFNCNVWDALKADRAGVL 308
Query: 264 REAHDNAIISLHFFANEPVLMSASADNSIKMW 295
HDN + L + + + S D+ +K+W
Sbjct: 309 -AGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 66/151 (43%), Gaps = 4/151 (2%)
Query: 473 HNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNG-LLA 531
H G+V+ ++ L +S K+WD + + + S + + NG A
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242
Query: 532 TVADDLVIRLFDVVALR--MVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILA 589
T +DD RLFD+ A + M + IT FS+ G+ LL+ D + +WD + A
Sbjct: 243 TGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA 302
Query: 590 RQIDAIHV-DVSITALSLSPNMDVLATAHVD 619
+ + D ++ L ++ + +AT D
Sbjct: 303 DRAGVLAGHDNRVSCLGVTDDGMAVATGSWD 333
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Query: 545 VALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS-ITA 603
+ +R R GH +I + D + L+S+ DG L IWD ++ AI + S +
Sbjct: 43 IQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMT 102
Query: 604 LSLSPNMDVLATAHVDQ 620
+ +P+ + +A +D
Sbjct: 103 CAYAPSGNYVACGGLDN 119
Score = 33.9 bits (76), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 38/170 (22%), Positives = 75/170 (44%), Gaps = 14/170 (8%)
Query: 466 SERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRD------LKSRWEVGCSLV 519
+ R+ H ++ + + + L++SA G + +WD + L+S W + C+
Sbjct: 47 TRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYA 106
Query: 520 KIVYHRVNGLLATVAD--DLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGM 577
+ G L + +L R +V R+ R+ GHT ++ F +D + + SSG
Sbjct: 107 PSGNYVACGGLDNICSIYNLKTREGNV---RVSRELAGHTGYLSCCRFLDDNQIVTSSG- 162
Query: 578 DGSLRIWDVILARQIDAIHVDVS-ITALSLSPNMDVLATAHVDQNGVYLW 626
D + +WD+ +Q + +LSL+P+ + + D + LW
Sbjct: 163 DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDAS-AKLW 211
Score = 33.1 bits (74), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 3/92 (3%)
Query: 530 LATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVI-- 587
+ T + D L+D+ + F GHT + + D + +S D S ++WDV
Sbjct: 157 IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG 216
Query: 588 LARQIDAIHVDVSITALSLSPNMDVLATAHVD 619
+ RQ H + I A+ PN + AT D
Sbjct: 217 MCRQTFTGH-ESDINAICFFPNGNAFATGSDD 247
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/70 (21%), Positives = 31/70 (44%)
Query: 516 CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSS 575
C + + + + LL DD ++D + GH +R++ ++DG + +
Sbjct: 271 CGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATG 330
Query: 576 GMDGSLRIWD 585
D L+IW+
Sbjct: 331 SWDSFLKIWN 340
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 42/96 (43%), Gaps = 3/96 (3%)
Query: 529 LLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVIL 588
L + A D +L+DV + F GH I CF +G + D + R++D+
Sbjct: 198 LFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRA 257
Query: 589 ARQIDAIHVD---VSITALSLSPNMDVLATAHVDQN 621
+++ D IT++S S + +L + D N
Sbjct: 258 DQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFN 293
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/235 (23%), Positives = 102/235 (43%), Gaps = 16/235 (6%)
Query: 123 IEENLAPVGHVKLDDKFT------PTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYE 176
I N+ PVG +++ + T MH T ++ SQ+G L +W+ T K++
Sbjct: 44 ITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHA 103
Query: 177 FKGWGXXXXXXXXXPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALA---FS 233
P+ + VA G D ++N++ E V + + G L+ F
Sbjct: 104 IPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFL 163
Query: 234 SDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIK 293
D Q + +SG ++ ++W++E + + H ++SL + + +S + D S K
Sbjct: 164 DDNQIVTSSGDTT--CALWDIETGQQTTTF-TGHTGDVMSLSLAPDTRLFVSGACDASAK 220
Query: 294 MWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQ 348
+W D +G R + +GH + I F+ NG + D RLF + DQ+
Sbjct: 221 LW--DVREGMCR--QTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQE 271
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 72/152 (47%), Gaps = 5/152 (3%)
Query: 145 MHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGXXXXXXXXXPALDVVAVGCSDGK 204
+ PDT L + G+ + S +LW++ F G P + A G D
Sbjct: 203 LAPDTRL--FVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDAT 260
Query: 205 IHVHNVRYDEELVTFTH-SMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVI 263
+ ++R D+EL+T++H ++ +T+++FS G+ LLA G ++W+ K V+
Sbjct: 261 CRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLA-GYDDFNCNVWDALKADRAGVL 319
Query: 264 REAHDNAIISLHFFANEPVLMSASADNSIKMW 295
HDN + L + + + S D+ +K+W
Sbjct: 320 -AGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 350
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 66/151 (43%), Gaps = 4/151 (2%)
Query: 473 HNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNG-LLA 531
H G+V+ ++ L +S K+WD + + + S + + NG A
Sbjct: 194 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 253
Query: 532 TVADDLVIRLFDVVALR--MVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILA 589
T +DD RLFD+ A + M + IT FS+ G+ LL+ D + +WD + A
Sbjct: 254 TGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA 313
Query: 590 RQIDAIHV-DVSITALSLSPNMDVLATAHVD 619
+ + D ++ L ++ + +AT D
Sbjct: 314 DRAGVLAGHDNRVSCLGVTDDGMAVATGSWD 344
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Query: 545 VALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS-ITA 603
+ +R R GH +I + D + L+S+ DG L IWD ++ AI + S +
Sbjct: 54 IQMRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMT 113
Query: 604 LSLSPNMDVLATAHVDQ 620
+ +P+ + +A +D
Sbjct: 114 CAYAPSGNYVACGGLDN 130
Score = 33.9 bits (76), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 38/170 (22%), Positives = 75/170 (44%), Gaps = 14/170 (8%)
Query: 466 SERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRD------LKSRWEVGCSLV 519
+ R+ H ++ + + + L++SA G + +WD + L+S W + C+
Sbjct: 58 TRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYA 117
Query: 520 KIVYHRVNGLLATVAD--DLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGM 577
+ G L + +L R +V R+ R+ GHT ++ F +D + + SSG
Sbjct: 118 PSGNYVACGGLDNICSIYNLKTREGNV---RVSRELAGHTGYLSCCRFLDDNQIVTSSG- 173
Query: 578 DGSLRIWDVILARQIDAIHVDVS-ITALSLSPNMDVLATAHVDQNGVYLW 626
D + +WD+ +Q + +LSL+P+ + + D + LW
Sbjct: 174 DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDAS-AKLW 222
Score = 33.1 bits (74), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 3/92 (3%)
Query: 530 LATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVI-- 587
+ T + D L+D+ + F GHT + + D + +S D S ++WDV
Sbjct: 168 IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG 227
Query: 588 LARQIDAIHVDVSITALSLSPNMDVLATAHVD 619
+ RQ H + I A+ PN + AT D
Sbjct: 228 MCRQTFTGH-ESDINAICFFPNGNAFATGSDD 258
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/70 (21%), Positives = 31/70 (44%)
Query: 516 CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSS 575
C + + + + LL DD ++D + GH +R++ ++DG + +
Sbjct: 282 CGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATG 341
Query: 576 GMDGSLRIWD 585
D L+IW+
Sbjct: 342 SWDSFLKIWN 351
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 42/96 (43%), Gaps = 3/96 (3%)
Query: 529 LLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVIL 588
L + A D +L+DV + F GH I CF +G + D + R++D+
Sbjct: 209 LFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRA 268
Query: 589 ARQIDAIHVD---VSITALSLSPNMDVLATAHVDQN 621
+++ D IT++S S + +L + D N
Sbjct: 269 DQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFN 304
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 56/235 (23%), Positives = 102/235 (43%), Gaps = 16/235 (6%)
Query: 123 IEENLAPVGHVKLDDKFT------PTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYE 176
I N+ PVG +++ + T MH T ++ SQ+G L +W+ T K++
Sbjct: 33 ITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHA 92
Query: 177 FKGWGXXXXXXXXXPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALA---FS 233
P+ + VA G D ++N++ E V + + G L+ F
Sbjct: 93 IPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFL 152
Query: 234 SDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIK 293
D Q + +SG ++ ++W++E + + H ++SL + + +S + D S K
Sbjct: 153 DDNQIVTSSGDTT--CALWDIETGQQTTTF-TGHTGDVMSLSLAPDTRLFVSGACDASAK 209
Query: 294 MWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQ 348
+W D +G R + +GH + I F+ NG + D RLF + DQ+
Sbjct: 210 LW--DVREGMCR--QTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQE 260
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 72/152 (47%), Gaps = 5/152 (3%)
Query: 145 MHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGXXXXXXXXXPALDVVAVGCSDGK 204
+ PDT L + G+ + S +LW++ F G P + A G D
Sbjct: 192 LAPDTRL--FVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDAT 249
Query: 205 IHVHNVRYDEELVTFTH-SMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVI 263
+ ++R D+EL+T++H ++ +T+++FS G+ LLA G ++W+ K V+
Sbjct: 250 CRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLA-GYDDFNCNVWDALKADRAGVL 308
Query: 264 REAHDNAIISLHFFANEPVLMSASADNSIKMW 295
HDN + L + + + S D+ +K+W
Sbjct: 309 -AGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 66/151 (43%), Gaps = 4/151 (2%)
Query: 473 HNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNG-LLA 531
H G+V+ ++ L +S K+WD + + + S + + NG A
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242
Query: 532 TVADDLVIRLFDVVALR--MVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILA 589
T +DD RLFD+ A + M + IT FS+ G+ LL+ D + +WD + A
Sbjct: 243 TGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA 302
Query: 590 RQIDAIHV-DVSITALSLSPNMDVLATAHVD 619
+ + D ++ L ++ + +AT D
Sbjct: 303 DRAGVLAGHDNRVSCLGVTDDGMAVATGSWD 333
Score = 36.6 bits (83), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Query: 545 VALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS-ITA 603
+ +R R GH +I + D + LLS+ DG L IWD ++ AI + S +
Sbjct: 43 IQMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMT 102
Query: 604 LSLSPNMDVLATAHVDQ 620
+ +P+ + +A +D
Sbjct: 103 CAYAPSGNYVACGGLDN 119
Score = 33.1 bits (74), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 3/92 (3%)
Query: 530 LATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVI-- 587
+ T + D L+D+ + F GHT + + D + +S D S ++WDV
Sbjct: 157 IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG 216
Query: 588 LARQIDAIHVDVSITALSLSPNMDVLATAHVD 619
+ RQ H + I A+ PN + AT D
Sbjct: 217 MCRQTFTGH-ESDINAICFFPNGNAFATGSDD 247
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/70 (21%), Positives = 31/70 (44%)
Query: 516 CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSS 575
C + + + + LL DD ++D + GH +R++ ++DG + +
Sbjct: 271 CGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATG 330
Query: 576 GMDGSLRIWD 585
D L+IW+
Sbjct: 331 SWDSFLKIWN 340
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 42/96 (43%), Gaps = 3/96 (3%)
Query: 529 LLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVIL 588
L + A D +L+DV + F GH I CF +G + D + R++D+
Sbjct: 198 LFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRA 257
Query: 589 ARQIDAIHVD---VSITALSLSPNMDVLATAHVDQN 621
+++ D IT++S S + +L + D N
Sbjct: 258 DQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFN 293
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 56/235 (23%), Positives = 102/235 (43%), Gaps = 16/235 (6%)
Query: 123 IEENLAPVGHVKLDDKFT------PTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYE 176
I N+ PVG +++ + T MH T ++ SQ+G L +W+ T K++
Sbjct: 33 ITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHA 92
Query: 177 FKGWGXXXXXXXXXPALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALA---FS 233
P+ + VA G D ++N++ E V + + G L+ F
Sbjct: 93 IPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFL 152
Query: 234 SDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIK 293
D Q + +SG ++ ++W++E + + H ++SL + + +S + D S K
Sbjct: 153 DDNQIVTSSGDTT--CALWDIETGQQTTTF-TGHTGDVMSLSLAPDTRLFVSGACDASAK 209
Query: 294 MWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQ 348
+W D +G R + +GH + I F+ NG + D RLF + DQ+
Sbjct: 210 LW--DVREGMCR--QTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQE 260
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 72/152 (47%), Gaps = 5/152 (3%)
Query: 145 MHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGXXXXXXXXXPALDVVAVGCSDGK 204
+ PDT L + G+ + S +LW++ F G P + A G D
Sbjct: 192 LAPDTRL--FVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDAT 249
Query: 205 IHVHNVRYDEELVTFTH-SMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVI 263
+ ++R D+EL+T++H ++ +T+++FS G+ LLA G ++W+ K V+
Sbjct: 250 CRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLA-GYDDFNCNVWDALKADRAGVL 308
Query: 264 REAHDNAIISLHFFANEPVLMSASADNSIKMW 295
HDN + L + + + S D+ +K+W
Sbjct: 309 -AGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 66/151 (43%), Gaps = 4/151 (2%)
Query: 473 HNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNG-LLA 531
H G+V+ ++ L +S K+WD + + + S + + NG A
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242
Query: 532 TVADDLVIRLFDVVALR--MVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILA 589
T +DD RLFD+ A + M + IT FS+ G+ LL+ D + +WD + A
Sbjct: 243 TGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA 302
Query: 590 RQIDAIHV-DVSITALSLSPNMDVLATAHVD 619
+ + D ++ L ++ + +AT D
Sbjct: 303 DRAGVLAGHDNRVSCLGVTDDGMAVATGSWD 333
Score = 36.6 bits (83), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Query: 545 VALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS-ITA 603
+ +R R GH +I + D + LLS+ DG L IWD ++ AI + S +
Sbjct: 43 IQMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMT 102
Query: 604 LSLSPNMDVLATAHVDQ 620
+ +P+ + +A +D
Sbjct: 103 CAYAPSGNYVACGGLDN 119
Score = 33.1 bits (74), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 3/92 (3%)
Query: 530 LATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVI-- 587
+ T + D L+D+ + F GHT + + D + +S D S ++WDV
Sbjct: 157 IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREG 216
Query: 588 LARQIDAIHVDVSITALSLSPNMDVLATAHVD 619
+ RQ H + I A+ PN + AT D
Sbjct: 217 MCRQTFTGH-ESDINAICFFPNGNAFATGSDD 247
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/70 (21%), Positives = 31/70 (44%)
Query: 516 CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSS 575
C + + + + LL DD ++D + GH +R++ ++DG + +
Sbjct: 271 CGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATG 330
Query: 576 GMDGSLRIWD 585
D L+IW+
Sbjct: 331 SWDSFLKIWN 340
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 42/96 (43%), Gaps = 3/96 (3%)
Query: 529 LLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVIL 588
L + A D +L+DV + F GH I CF +G + D + R++D+
Sbjct: 198 LFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRA 257
Query: 589 ARQIDAIHVD---VSITALSLSPNMDVLATAHVDQN 621
+++ D IT++S S + +L + D N
Sbjct: 258 DQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFN 293
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 63.9 bits (154), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 109/212 (51%), Gaps = 23/212 (10%)
Query: 152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGXXXXXXXXXPALDVVAVGCSDGKIHVHNVR 211
N ++ S + +L++W++S+ K L KG P +++ G D + + +V+
Sbjct: 78 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 137
Query: 212 YDEELVTF-THSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR-LQSVIREAHDN 269
+ L T HS V+A+ F+ DG L+ S + G+ IW+ + L+++I + DN
Sbjct: 138 TGKCLKTLPAHS--DPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLIDD--DN 192
Query: 270 AIIS-LHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN--- 325
+S + F N +++A+ DN++K+W D + G + L+ +GH CI +AN
Sbjct: 193 PPVSFVKFSPNGKYILAATLDNTLKLW--DYSKG--KCLKTYTGHKNEKYCI--FANFSV 246
Query: 326 --GRHILSAGQDRAFRLFSVIQDQQSRELSQR 355
G+ I+S +D ++++ Q++E+ Q+
Sbjct: 247 TGGKWIVSGSEDNLVYIWNL----QTKEIVQK 274
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 83/170 (48%), Gaps = 4/170 (2%)
Query: 460 GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF-KGRDLKSRWEVGCSL 518
G+Y E++ H + VA S + L++SA +K+WD G+ LK+ +
Sbjct: 51 GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 110
Query: 519 VKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD 578
++ + L+ + + D +R++DV + ++ H+D ++ F+ DG ++SS D
Sbjct: 111 FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 170
Query: 579 GSLRIWDVILARQIDAIHVDVS--ITALSLSPNMDVLATAHVDQNGVYLW 626
G RIWD + + + D + ++ + SPN + A +D N + LW
Sbjct: 171 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD-NTLKLW 219
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 65/339 (19%), Positives = 137/339 (40%), Gaps = 56/339 (16%)
Query: 307 LRFR-SGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARXXX 365
L+F +GH+ ++F NG + S+ D+ +++ + + +S +
Sbjct: 15 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG------- 67
Query: 366 XXXXXXXXXPVIAFDCAEIRERDWC---NVVTCHMDTAQAYVWRLQNFVLGEHILRPCPE 422
I + W N++ D +W V L+
Sbjct: 68 ------------------ISDVAWSSDSNLLVSASDDKTLKIWD----VSSGKCLKTLKG 105
Query: 423 NPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVAC 482
+ V C + N V G+ + +++++G ++ AH+ V V
Sbjct: 106 HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG--------KCLKTLPAHSDPVSAVHF 157
Query: 483 DSTNTLMISAGYHGDIKVWDF-KGRDLKSRWEVGCSLVKIVYHRVNG--LLATVADDLVI 539
+ +L++S+ Y G ++WD G+ LK+ + V V NG +LA D+ +
Sbjct: 158 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN-TL 216
Query: 540 RLFDVVALRMVRKFEGHTDRITDFCFSED-----GKWLLSSGMDGSLRIWDVILARQIDA 594
+L+D + ++ + GH + +C + GKW++S D + IW++ +
Sbjct: 217 KLWDYSKGKCLKTYTGHKNE--KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 274
Query: 595 I--HVDVSITALSLSPNMDVLATAHVDQN-GVYLWVNRC 630
+ H DV I+ + P +++A+A ++ + + LW + C
Sbjct: 275 LQGHTDVVIST-ACHPTENIIASAALENDKTIKLWKSDC 312
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/165 (21%), Positives = 73/165 (44%), Gaps = 23/165 (13%)
Query: 468 RSNYA-------HNGEVVGVACDSTNTLMISAGYHGDIKVWD-FKGRDLKSRWEVGCSLV 519
+ NYA H V V + S+ IK+W + G+ K+ +
Sbjct: 10 KPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS 69
Query: 520 KIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFC--FSEDGKWLLSSGM 577
+ + + LL + +DD ++++DV + + ++ +GH++ + FC F+ ++S
Sbjct: 70 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV--FCCNFNPQSNLIVSGSF 127
Query: 578 DGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNG 622
D S+RIWDV + + +L + D ++ H +++G
Sbjct: 128 DESVRIWDVKTGKCLK-----------TLPAHSDPVSAVHFNRDG 161
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 59/300 (19%), Positives = 113/300 (37%), Gaps = 43/300 (14%)
Query: 266 AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN 325
H A+ S+ F N L S+SAD IK+W DG + + SGH + + ++
Sbjct: 21 GHTKAVSSVKFSPNGEWLASSSADKLIKIW--GAYDG--KFEKTISGHKLGISDVAWSSD 76
Query: 326 GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARXXXXXXXXXXXXPVIAFDCAEIR 385
++SA D+ +++ V + + L F C
Sbjct: 77 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHS-------------------NYVF-CCNFN 116
Query: 386 ERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAG 445
+ N++ +W ++ L+ P + V A + G+ V +
Sbjct: 117 PQS--NLIVSGSFDESVRIWDVKT----GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 170
Query: 446 GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF-K 504
G ++ SG + +D N V V +++A +K+WD+ K
Sbjct: 171 GLCRIWDTASGQCLKTLID-------DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 223
Query: 505 GRDLKS----RWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRI 560
G+ LK+ + E C +++ D+LV ++++ +V+K +GHTD +
Sbjct: 224 GKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY-IWNLQTKEIVQKLQGHTDVV 282
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 63.9 bits (154), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 109/212 (51%), Gaps = 23/212 (10%)
Query: 152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGXXXXXXXXXPALDVVAVGCSDGKIHVHNVR 211
N ++ S + +L++W++S+ K L KG P +++ G D + + +V+
Sbjct: 78 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 137
Query: 212 YDEELVTF-THSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR-LQSVIREAHDN 269
+ L T HS V+A+ F+ DG L+ S + G+ IW+ + L+++I + DN
Sbjct: 138 TGKCLKTLPAHS--DPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLIDD--DN 192
Query: 270 AIIS-LHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN--- 325
+S + F N +++A+ DN++K+W D + G + L+ +GH CI +AN
Sbjct: 193 PPVSFVKFSPNGKYILAATLDNTLKLW--DYSKG--KCLKTYTGHKNEKYCI--FANFSV 246
Query: 326 --GRHILSAGQDRAFRLFSVIQDQQSRELSQR 355
G+ I+S +D ++++ Q++E+ Q+
Sbjct: 247 TGGKWIVSGSEDNLVYIWNL----QTKEIVQK 274
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 83/170 (48%), Gaps = 4/170 (2%)
Query: 460 GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF-KGRDLKSRWEVGCSL 518
G+Y E++ H + VA S + L++SA +K+WD G+ LK+ +
Sbjct: 51 GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 110
Query: 519 VKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD 578
++ + L+ + + D +R++DV + ++ H+D ++ F+ DG ++SS D
Sbjct: 111 FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 170
Query: 579 GSLRIWDVILARQIDAIHVDVS--ITALSLSPNMDVLATAHVDQNGVYLW 626
G RIWD + + + D + ++ + SPN + A +D N + LW
Sbjct: 171 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD-NTLKLW 219
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 64/339 (18%), Positives = 138/339 (40%), Gaps = 56/339 (16%)
Query: 307 LRFR-SGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARXXX 365
L+F +GH+ ++F NG + S+ D+ +++ + + +S +
Sbjct: 15 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG------- 67
Query: 366 XXXXXXXXXPVIAFDCAEIRERDWC---NVVTCHMDTAQAYVWRLQNFVLGEHILRPCPE 422
I + W N++ D +W + + L+
Sbjct: 68 ------------------ISDVAWSSDSNLLVSASDDKTLKIWDVSS----GKCLKTLKG 105
Query: 423 NPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVAC 482
+ V C + N V G+ + +++++G ++ AH+ V V
Sbjct: 106 HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG--------KCLKTLPAHSDPVSAVHF 157
Query: 483 DSTNTLMISAGYHGDIKVWDF-KGRDLKSRWEVGCSLVKIVYHRVNG--LLATVADDLVI 539
+ +L++S+ Y G ++WD G+ LK+ + V V NG +LA D+ +
Sbjct: 158 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN-TL 216
Query: 540 RLFDVVALRMVRKFEGHTDRITDFCFSED-----GKWLLSSGMDGSLRIWDVILARQIDA 594
+L+D + ++ + GH + +C + GKW++S D + IW++ +
Sbjct: 217 KLWDYSKGKCLKTYTGHKNE--KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 274
Query: 595 I--HVDVSITALSLSPNMDVLATAHVDQNG-VYLWVNRC 630
+ H DV I+ + P +++A+A ++ + + LW + C
Sbjct: 275 LQGHTDVVIST-ACHPTENIIASAALENDKTIKLWKSDC 312
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 35/165 (21%), Positives = 73/165 (44%), Gaps = 23/165 (13%)
Query: 468 RSNYA-------HNGEVVGVACDSTNTLMISAGYHGDIKVWD-FKGRDLKSRWEVGCSLV 519
+ NYA H V V + S+ IK+W + G+ K+ +
Sbjct: 10 KPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS 69
Query: 520 KIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFC--FSEDGKWLLSSGM 577
+ + + LL + +DD ++++DV + + ++ +GH++ + FC F+ ++S
Sbjct: 70 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV--FCCNFNPQSNLIVSGSF 127
Query: 578 DGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNG 622
D S+RIWDV + + +L + D ++ H +++G
Sbjct: 128 DESVRIWDVKTGKCLK-----------TLPAHSDPVSAVHFNRDG 161
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 59/300 (19%), Positives = 113/300 (37%), Gaps = 43/300 (14%)
Query: 266 AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN 325
H A+ S+ F N L S+SAD IK+W DG + + SGH + + ++
Sbjct: 21 GHTKAVSSVKFSPNGEWLASSSADKLIKIW--GAYDG--KFEKTISGHKLGISDVAWSSD 76
Query: 326 GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARXXXXXXXXXXXXPVIAFDCAEIR 385
++SA D+ +++ V + + L F C
Sbjct: 77 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHS-------------------NYVF-CCNFN 116
Query: 386 ERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAG 445
+ N++ +W ++ L+ P + V A + G+ V +
Sbjct: 117 PQS--NLIVSGSFDESVRIWDVKT----GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 170
Query: 446 GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF-K 504
G ++ SG + +D N V V +++A +K+WD+ K
Sbjct: 171 GLCRIWDTASGQCLKTLID-------DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 223
Query: 505 GRDLKS----RWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRI 560
G+ LK+ + E C +++ D+LV ++++ +V+K +GHTD +
Sbjct: 224 GKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY-IWNLQTKEIVQKLQGHTDVV 282
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 109/212 (51%), Gaps = 23/212 (10%)
Query: 152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGXXXXXXXXXPALDVVAVGCSDGKIHVHNVR 211
N ++ S + +L++W++S+ K L KG P +++ G D + + +V+
Sbjct: 74 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 133
Query: 212 YDEELVTF-THSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR-LQSVIREAHDN 269
+ L T HS V+A+ F+ DG L+ S + G+ IW+ + L+++I + DN
Sbjct: 134 TGKCLKTLPAHS--DPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLIDD--DN 188
Query: 270 AIIS-LHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN--- 325
+S + F N +++A+ DN++K+W D + G + L+ +GH CI +AN
Sbjct: 189 PPVSFVKFSPNGKYILAATLDNTLKLW--DYSKG--KCLKTYTGHKNEKYCI--FANFSV 242
Query: 326 --GRHILSAGQDRAFRLFSVIQDQQSRELSQR 355
G+ I+S +D ++++ Q++E+ Q+
Sbjct: 243 TGGKWIVSGSEDNLVYIWNL----QTKEIVQK 270
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 83/170 (48%), Gaps = 4/170 (2%)
Query: 460 GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF-KGRDLKSRWEVGCSL 518
G+Y E++ H + VA S + L++SA +K+WD G+ LK+ +
Sbjct: 47 GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 106
Query: 519 VKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD 578
++ + L+ + + D +R++DV + ++ H+D ++ F+ DG ++SS D
Sbjct: 107 FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 166
Query: 579 GSLRIWDVILARQIDAIHVDVS--ITALSLSPNMDVLATAHVDQNGVYLW 626
G RIWD + + + D + ++ + SPN + A +D N + LW
Sbjct: 167 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD-NTLKLW 215
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 64/339 (18%), Positives = 138/339 (40%), Gaps = 56/339 (16%)
Query: 307 LRFR-SGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARXXX 365
L+F +GH+ ++F NG + S+ D+ +++ + + +S +
Sbjct: 11 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG------- 63
Query: 366 XXXXXXXXXPVIAFDCAEIRERDWC---NVVTCHMDTAQAYVWRLQNFVLGEHILRPCPE 422
I + W N++ D +W + + L+
Sbjct: 64 ------------------ISDVAWSSDSNLLVSASDDKTLKIWDVSS----GKCLKTLKG 101
Query: 423 NPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVAC 482
+ V C + N V G+ + +++++G ++ AH+ V V
Sbjct: 102 HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG--------KCLKTLPAHSDPVSAVHF 153
Query: 483 DSTNTLMISAGYHGDIKVWDF-KGRDLKSRWEVGCSLVKIVYHRVNG--LLATVADDLVI 539
+ +L++S+ Y G ++WD G+ LK+ + V V NG +LA D+ +
Sbjct: 154 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN-TL 212
Query: 540 RLFDVVALRMVRKFEGHTDRITDFCFSED-----GKWLLSSGMDGSLRIWDVILARQIDA 594
+L+D + ++ + GH + +C + GKW++S D + IW++ +
Sbjct: 213 KLWDYSKGKCLKTYTGHKNE--KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 270
Query: 595 I--HVDVSITALSLSPNMDVLATAHVDQNG-VYLWVNRC 630
+ H DV I+ + P +++A+A ++ + + LW + C
Sbjct: 271 LQGHTDVVIST-ACHPTENIIASAALENDKTIKLWKSDC 308
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/165 (21%), Positives = 73/165 (44%), Gaps = 23/165 (13%)
Query: 468 RSNYA-------HNGEVVGVACDSTNTLMISAGYHGDIKVWD-FKGRDLKSRWEVGCSLV 519
+ NYA H V V + S+ IK+W + G+ K+ +
Sbjct: 6 KPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS 65
Query: 520 KIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFC--FSEDGKWLLSSGM 577
+ + + LL + +DD ++++DV + + ++ +GH++ + FC F+ ++S
Sbjct: 66 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV--FCCNFNPQSNLIVSGSF 123
Query: 578 DGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNG 622
D S+RIWDV + + +L + D ++ H +++G
Sbjct: 124 DESVRIWDVKTGKCLK-----------TLPAHSDPVSAVHFNRDG 157
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 59/300 (19%), Positives = 113/300 (37%), Gaps = 43/300 (14%)
Query: 266 AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN 325
H A+ S+ F N L S+SAD IK+W DG + + SGH + + ++
Sbjct: 17 GHTKAVSSVKFSPNGEWLASSSADKLIKIW--GAYDG--KFEKTISGHKLGISDVAWSSD 72
Query: 326 GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARXXXXXXXXXXXXPVIAFDCAEIR 385
++SA D+ +++ V + + L F C
Sbjct: 73 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHS-------------------NYVF-CCNFN 112
Query: 386 ERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAG 445
+ N++ +W ++ L+ P + V A + G+ V +
Sbjct: 113 PQS--NLIVSGSFDESVRIWDVKT----GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 166
Query: 446 GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF-K 504
G ++ SG + +D N V V +++A +K+WD+ K
Sbjct: 167 GLCRIWDTASGQCLKTLID-------DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 219
Query: 505 GRDLKS----RWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRI 560
G+ LK+ + E C +++ D+LV ++++ +V+K +GHTD +
Sbjct: 220 GKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY-IWNLQTKEIVQKLQGHTDVV 278
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 109/212 (51%), Gaps = 23/212 (10%)
Query: 152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGXXXXXXXXXPALDVVAVGCSDGKIHVHNVR 211
N ++ S + +L++W++S+ K L KG P +++ G D + + +V+
Sbjct: 79 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 138
Query: 212 YDEELVTF-THSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR-LQSVIREAHDN 269
+ L T HS V+A+ F+ DG L+ S + G+ IW+ + L+++I + DN
Sbjct: 139 TGKCLKTLPAHS--DPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLIDD--DN 193
Query: 270 AIIS-LHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN--- 325
+S + F N +++A+ DN++K+W D + G + L+ +GH CI +AN
Sbjct: 194 PPVSFVKFSPNGKYILAATLDNTLKLW--DYSKG--KCLKTYTGHKNEKYCI--FANFSV 247
Query: 326 --GRHILSAGQDRAFRLFSVIQDQQSRELSQR 355
G+ I+S +D ++++ Q++E+ Q+
Sbjct: 248 TGGKWIVSGSEDNLVYIWNL----QTKEIVQK 275
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 83/170 (48%), Gaps = 4/170 (2%)
Query: 460 GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF-KGRDLKSRWEVGCSL 518
G+Y E++ H + VA S + L++SA +K+WD G+ LK+ +
Sbjct: 52 GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 111
Query: 519 VKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD 578
++ + L+ + + D +R++DV + ++ H+D ++ F+ DG ++SS D
Sbjct: 112 FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 171
Query: 579 GSLRIWDVILARQIDAIHVDVS--ITALSLSPNMDVLATAHVDQNGVYLW 626
G RIWD + + + D + ++ + SPN + A +D N + LW
Sbjct: 172 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD-NTLKLW 220
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 64/339 (18%), Positives = 138/339 (40%), Gaps = 56/339 (16%)
Query: 307 LRFR-SGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARXXX 365
L+F +GH+ ++F NG + S+ D+ +++ + + +S +
Sbjct: 16 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG------- 68
Query: 366 XXXXXXXXXPVIAFDCAEIRERDWC---NVVTCHMDTAQAYVWRLQNFVLGEHILRPCPE 422
I + W N++ D +W + + L+
Sbjct: 69 ------------------ISDVAWSSDSNLLVSASDDKTLKIWDVSS----GKCLKTLKG 106
Query: 423 NPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVAC 482
+ V C + N V G+ + +++++G ++ AH+ V V
Sbjct: 107 HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG--------KCLKTLPAHSDPVSAVHF 158
Query: 483 DSTNTLMISAGYHGDIKVWDF-KGRDLKSRWEVGCSLVKIVYHRVNG--LLATVADDLVI 539
+ +L++S+ Y G ++WD G+ LK+ + V V NG +LA D+ +
Sbjct: 159 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN-TL 217
Query: 540 RLFDVVALRMVRKFEGHTDRITDFCFSED-----GKWLLSSGMDGSLRIWDVILARQIDA 594
+L+D + ++ + GH + +C + GKW++S D + IW++ +
Sbjct: 218 KLWDYSKGKCLKTYTGHKNE--KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 275
Query: 595 I--HVDVSITALSLSPNMDVLATAHVDQNG-VYLWVNRC 630
+ H DV I+ + P +++A+A ++ + + LW + C
Sbjct: 276 LQGHTDVVIST-ACHPTENIIASAALENDKTIKLWKSDC 313
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 35/165 (21%), Positives = 73/165 (44%), Gaps = 23/165 (13%)
Query: 468 RSNYA-------HNGEVVGVACDSTNTLMISAGYHGDIKVWD-FKGRDLKSRWEVGCSLV 519
+ NYA H V V + S+ IK+W + G+ K+ +
Sbjct: 11 KPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS 70
Query: 520 KIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFC--FSEDGKWLLSSGM 577
+ + + LL + +DD ++++DV + + ++ +GH++ + FC F+ ++S
Sbjct: 71 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV--FCCNFNPQSNLIVSGSF 128
Query: 578 DGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNG 622
D S+RIWDV + + +L + D ++ H +++G
Sbjct: 129 DESVRIWDVKTGKCLK-----------TLPAHSDPVSAVHFNRDG 162
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 59/300 (19%), Positives = 113/300 (37%), Gaps = 43/300 (14%)
Query: 266 AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN 325
H A+ S+ F N L S+SAD IK+W DG + + SGH + + ++
Sbjct: 22 GHTKAVSSVKFSPNGEWLASSSADKLIKIW--GAYDG--KFEKTISGHKLGISDVAWSSD 77
Query: 326 GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARXXXXXXXXXXXXPVIAFDCAEIR 385
++SA D+ +++ V + + L F C
Sbjct: 78 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHS-------------------NYVF-CCNFN 117
Query: 386 ERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAG 445
+ N++ +W ++ L+ P + V A + G+ V +
Sbjct: 118 PQS--NLIVSGSFDESVRIWDVKT----GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 171
Query: 446 GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF-K 504
G ++ SG + +D N V V +++A +K+WD+ K
Sbjct: 172 GLCRIWDTASGQCLKTLID-------DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 224
Query: 505 GRDLKS----RWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRI 560
G+ LK+ + E C +++ D+LV ++++ +V+K +GHTD +
Sbjct: 225 GKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY-IWNLQTKEIVQKLQGHTDVV 283
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 63.5 bits (153), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 109/212 (51%), Gaps = 23/212 (10%)
Query: 152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGXXXXXXXXXPALDVVAVGCSDGKIHVHNVR 211
N ++ S + +L++W++S+ K L KG P +++ G D + + +V+
Sbjct: 84 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 143
Query: 212 YDEELVTF-THSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR-LQSVIREAHDN 269
+ L T HS V+A+ F+ DG L+ S + G+ IW+ + L+++I + DN
Sbjct: 144 TGKCLKTLPAHS--DPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLIDD--DN 198
Query: 270 AIIS-LHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN--- 325
+S + F N +++A+ DN++K+W D + G + L+ +GH CI +AN
Sbjct: 199 PPVSFVKFSPNGKYILAATLDNTLKLW--DYSKG--KCLKTYTGHKNEKYCI--FANFSV 252
Query: 326 --GRHILSAGQDRAFRLFSVIQDQQSRELSQR 355
G+ I+S +D ++++ Q++E+ Q+
Sbjct: 253 TGGKWIVSGSEDNLVYIWNL----QTKEIVQK 280
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 83/170 (48%), Gaps = 4/170 (2%)
Query: 460 GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF-KGRDLKSRWEVGCSL 518
G+Y E++ H + VA S + L++SA +K+WD G+ LK+ +
Sbjct: 57 GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 116
Query: 519 VKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD 578
++ + L+ + + D +R++DV + ++ H+D ++ F+ DG ++SS D
Sbjct: 117 FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 176
Query: 579 GSLRIWDVILARQIDAIHVDVS--ITALSLSPNMDVLATAHVDQNGVYLW 626
G RIWD + + + D + ++ + SPN + A +D N + LW
Sbjct: 177 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD-NTLKLW 225
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 64/339 (18%), Positives = 138/339 (40%), Gaps = 56/339 (16%)
Query: 307 LRFR-SGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARXXX 365
L+F +GH+ ++F NG + S+ D+ +++ + + +S +
Sbjct: 21 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG------- 73
Query: 366 XXXXXXXXXPVIAFDCAEIRERDWC---NVVTCHMDTAQAYVWRLQNFVLGEHILRPCPE 422
I + W N++ D +W + + L+
Sbjct: 74 ------------------ISDVAWSSDSNLLVSASDDKTLKIWDVSS----GKCLKTLKG 111
Query: 423 NPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVAC 482
+ V C + N V G+ + +++++G ++ AH+ V V
Sbjct: 112 HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG--------KCLKTLPAHSDPVSAVHF 163
Query: 483 DSTNTLMISAGYHGDIKVWDF-KGRDLKSRWEVGCSLVKIVYHRVNG--LLATVADDLVI 539
+ +L++S+ Y G ++WD G+ LK+ + V V NG +LA D+ +
Sbjct: 164 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN-TL 222
Query: 540 RLFDVVALRMVRKFEGHTDRITDFCFSED-----GKWLLSSGMDGSLRIWDVILARQIDA 594
+L+D + ++ + GH + +C + GKW++S D + IW++ +
Sbjct: 223 KLWDYSKGKCLKTYTGHKNE--KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 280
Query: 595 I--HVDVSITALSLSPNMDVLATAHVDQNG-VYLWVNRC 630
+ H DV I+ + P +++A+A ++ + + LW + C
Sbjct: 281 LQGHTDVVIST-ACHPTENIIASAALENDKTIKLWKSDC 318
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/165 (21%), Positives = 73/165 (44%), Gaps = 23/165 (13%)
Query: 468 RSNYA-------HNGEVVGVACDSTNTLMISAGYHGDIKVWD-FKGRDLKSRWEVGCSLV 519
+ NYA H V V + S+ IK+W + G+ K+ +
Sbjct: 16 KPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS 75
Query: 520 KIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFC--FSEDGKWLLSSGM 577
+ + + LL + +DD ++++DV + + ++ +GH++ + FC F+ ++S
Sbjct: 76 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV--FCCNFNPQSNLIVSGSF 133
Query: 578 DGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNG 622
D S+RIWDV + + +L + D ++ H +++G
Sbjct: 134 DESVRIWDVKTGKCLK-----------TLPAHSDPVSAVHFNRDG 167
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 59/300 (19%), Positives = 113/300 (37%), Gaps = 43/300 (14%)
Query: 266 AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN 325
H A+ S+ F N L S+SAD IK+W DG + + SGH + + ++
Sbjct: 27 GHTKAVSSVKFSPNGEWLASSSADKLIKIW--GAYDG--KFEKTISGHKLGISDVAWSSD 82
Query: 326 GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARXXXXXXXXXXXXPVIAFDCAEIR 385
++SA D+ +++ V + + L F C
Sbjct: 83 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHS-------------------NYVF-CCNFN 122
Query: 386 ERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAG 445
+ N++ +W ++ L+ P + V A + G+ V +
Sbjct: 123 PQS--NLIVSGSFDESVRIWDVKT----GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 176
Query: 446 GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF-K 504
G ++ SG + +D N V V +++A +K+WD+ K
Sbjct: 177 GLCRIWDTASGQCLKTLID-------DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 229
Query: 505 GRDLKS----RWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRI 560
G+ LK+ + E C +++ D+LV ++++ +V+K +GHTD +
Sbjct: 230 GKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY-IWNLQTKEIVQKLQGHTDVV 288
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 63.5 bits (153), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 109/212 (51%), Gaps = 23/212 (10%)
Query: 152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGXXXXXXXXXPALDVVAVGCSDGKIHVHNVR 211
N ++ S + +L++W++S+ K L KG P +++ G D + + +V+
Sbjct: 77 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 136
Query: 212 YDEELVTF-THSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR-LQSVIREAHDN 269
+ L T HS V+A+ F+ DG L+ S + G+ IW+ + L+++I + DN
Sbjct: 137 TGKCLKTLPAHS--DPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLIDD--DN 191
Query: 270 AIIS-LHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN--- 325
+S + F N +++A+ DN++K+W D + G + L+ +GH CI +AN
Sbjct: 192 PPVSFVKFSPNGKYILAATLDNTLKLW--DYSKG--KCLKTYTGHKNEKYCI--FANFSV 245
Query: 326 --GRHILSAGQDRAFRLFSVIQDQQSRELSQR 355
G+ I+S +D ++++ Q++E+ Q+
Sbjct: 246 TGGKWIVSGSEDNLVYIWNL----QTKEIVQK 273
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 83/170 (48%), Gaps = 4/170 (2%)
Query: 460 GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF-KGRDLKSRWEVGCSL 518
G+Y E++ H + VA S + L++SA +K+WD G+ LK+ +
Sbjct: 50 GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 109
Query: 519 VKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD 578
++ + L+ + + D +R++DV + ++ H+D ++ F+ DG ++SS D
Sbjct: 110 FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 169
Query: 579 GSLRIWDVILARQIDAIHVDVS--ITALSLSPNMDVLATAHVDQNGVYLW 626
G RIWD + + + D + ++ + SPN + A +D N + LW
Sbjct: 170 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD-NTLKLW 218
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 64/339 (18%), Positives = 138/339 (40%), Gaps = 56/339 (16%)
Query: 307 LRFR-SGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARXXX 365
L+F +GH+ ++F NG + S+ D+ +++ + + +S +
Sbjct: 14 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG------- 66
Query: 366 XXXXXXXXXPVIAFDCAEIRERDWC---NVVTCHMDTAQAYVWRLQNFVLGEHILRPCPE 422
I + W N++ D +W + + L+
Sbjct: 67 ------------------ISDVAWSSDSNLLVSASDDKTLKIWDVSS----GKCLKTLKG 104
Query: 423 NPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVAC 482
+ V C + N V G+ + +++++G ++ AH+ V V
Sbjct: 105 HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG--------KCLKTLPAHSDPVSAVHF 156
Query: 483 DSTNTLMISAGYHGDIKVWDF-KGRDLKSRWEVGCSLVKIVYHRVNG--LLATVADDLVI 539
+ +L++S+ Y G ++WD G+ LK+ + V V NG +LA D+ +
Sbjct: 157 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN-TL 215
Query: 540 RLFDVVALRMVRKFEGHTDRITDFCFSED-----GKWLLSSGMDGSLRIWDVILARQIDA 594
+L+D + ++ + GH + +C + GKW++S D + IW++ +
Sbjct: 216 KLWDYSKGKCLKTYTGHKNE--KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 273
Query: 595 I--HVDVSITALSLSPNMDVLATAHVDQN-GVYLWVNRC 630
+ H DV I+ + P +++A+A ++ + + LW + C
Sbjct: 274 LQGHTDVVIST-ACHPTENIIASAALENDKTIKLWKSDC 311
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/165 (21%), Positives = 73/165 (44%), Gaps = 23/165 (13%)
Query: 468 RSNYA-------HNGEVVGVACDSTNTLMISAGYHGDIKVWD-FKGRDLKSRWEVGCSLV 519
+ NYA H V V + S+ IK+W + G+ K+ +
Sbjct: 9 KPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS 68
Query: 520 KIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFC--FSEDGKWLLSSGM 577
+ + + LL + +DD ++++DV + + ++ +GH++ + FC F+ ++S
Sbjct: 69 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV--FCCNFNPQSNLIVSGSF 126
Query: 578 DGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNG 622
D S+RIWDV + + +L + D ++ H +++G
Sbjct: 127 DESVRIWDVKTGKCLK-----------TLPAHSDPVSAVHFNRDG 160
Score = 35.0 bits (79), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 59/300 (19%), Positives = 113/300 (37%), Gaps = 43/300 (14%)
Query: 266 AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN 325
H A+ S+ F N L S+SAD IK+W DG + + SGH + + ++
Sbjct: 20 GHTKAVSSVKFSPNGEWLASSSADKLIKIW--GAYDG--KFEKTISGHKLGISDVAWSSD 75
Query: 326 GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARXXXXXXXXXXXXPVIAFDCAEIR 385
++SA D+ +++ V + + L F C
Sbjct: 76 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHS-------------------NYVF-CCNFN 115
Query: 386 ERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAG 445
+ N++ +W ++ L+ P + V A + G+ V +
Sbjct: 116 PQS--NLIVSGSFDESVRIWDVKT----GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 169
Query: 446 GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF-K 504
G ++ SG + +D N V V +++A +K+WD+ K
Sbjct: 170 GLCRIWDTASGQCLKTLID-------DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 222
Query: 505 GRDLKS----RWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRI 560
G+ LK+ + E C +++ D+LV ++++ +V+K +GHTD +
Sbjct: 223 GKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY-IWNLQTKEIVQKLQGHTDVV 281
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 63.5 bits (153), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 109/212 (51%), Gaps = 23/212 (10%)
Query: 152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGXXXXXXXXXPALDVVAVGCSDGKIHVHNVR 211
N ++ S + +L++W++S+ K L KG P +++ G D + + +V+
Sbjct: 95 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 154
Query: 212 YDEELVTF-THSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR-LQSVIREAHDN 269
+ L T HS V+A+ F+ DG L+ S + G+ IW+ + L+++I + DN
Sbjct: 155 TGKCLKTLPAHS--DPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLIDD--DN 209
Query: 270 AIIS-LHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN--- 325
+S + F N +++A+ DN++K+W D + G + L+ +GH CI +AN
Sbjct: 210 PPVSFVKFSPNGKYILAATLDNTLKLW--DYSKG--KCLKTYTGHKNEKYCI--FANFSV 263
Query: 326 --GRHILSAGQDRAFRLFSVIQDQQSRELSQR 355
G+ I+S +D ++++ Q++E+ Q+
Sbjct: 264 TGGKWIVSGSEDNLVYIWNL----QTKEIVQK 291
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 83/170 (48%), Gaps = 4/170 (2%)
Query: 460 GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF-KGRDLKSRWEVGCSL 518
G+Y E++ H + VA S + L++SA +K+WD G+ LK+ +
Sbjct: 68 GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 127
Query: 519 VKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD 578
++ + L+ + + D +R++DV + ++ H+D ++ F+ DG ++SS D
Sbjct: 128 FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 187
Query: 579 GSLRIWDVILARQIDAIHVDVS--ITALSLSPNMDVLATAHVDQNGVYLW 626
G RIWD + + + D + ++ + SPN + A +D N + LW
Sbjct: 188 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD-NTLKLW 236
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 65/339 (19%), Positives = 137/339 (40%), Gaps = 56/339 (16%)
Query: 307 LRFR-SGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARXXX 365
L+F +GH+ ++F NG + S+ D+ +++ + + +S +
Sbjct: 32 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG------- 84
Query: 366 XXXXXXXXXPVIAFDCAEIRERDWC---NVVTCHMDTAQAYVWRLQNFVLGEHILRPCPE 422
I + W N++ D +W V L+
Sbjct: 85 ------------------ISDVAWSSDSNLLVSASDDKTLKIWD----VSSGKCLKTLKG 122
Query: 423 NPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVAC 482
+ V C + N V G+ + +++++G ++ AH+ V V
Sbjct: 123 HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG--------KCLKTLPAHSDPVSAVHF 174
Query: 483 DSTNTLMISAGYHGDIKVWDF-KGRDLKSRWEVGCSLVKIVYHRVNG--LLATVADDLVI 539
+ +L++S+ Y G ++WD G+ LK+ + V V NG +LA D+ +
Sbjct: 175 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN-TL 233
Query: 540 RLFDVVALRMVRKFEGHTDRITDFCFSED-----GKWLLSSGMDGSLRIWDVILARQIDA 594
+L+D + ++ + GH + +C + GKW++S D + IW++ +
Sbjct: 234 KLWDYSKGKCLKTYTGHKNE--KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 291
Query: 595 I--HVDVSITALSLSPNMDVLATAHVDQN-GVYLWVNRC 630
+ H DV I+ + P +++A+A ++ + + LW + C
Sbjct: 292 LQGHTDVVIST-ACHPTENIIASAALENDKTIKLWKSDC 329
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 35/165 (21%), Positives = 73/165 (44%), Gaps = 23/165 (13%)
Query: 468 RSNYA-------HNGEVVGVACDSTNTLMISAGYHGDIKVWD-FKGRDLKSRWEVGCSLV 519
+ NYA H V V + S+ IK+W + G+ K+ +
Sbjct: 27 KPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS 86
Query: 520 KIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFC--FSEDGKWLLSSGM 577
+ + + LL + +DD ++++DV + + ++ +GH++ + FC F+ ++S
Sbjct: 87 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV--FCCNFNPQSNLIVSGSF 144
Query: 578 DGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNG 622
D S+RIWDV + + +L + D ++ H +++G
Sbjct: 145 DESVRIWDVKTGKCLK-----------TLPAHSDPVSAVHFNRDG 178
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 59/300 (19%), Positives = 113/300 (37%), Gaps = 43/300 (14%)
Query: 266 AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN 325
H A+ S+ F N L S+SAD IK+W DG + + SGH + + ++
Sbjct: 38 GHTKAVSSVKFSPNGEWLASSSADKLIKIW--GAYDG--KFEKTISGHKLGISDVAWSSD 93
Query: 326 GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARXXXXXXXXXXXXPVIAFDCAEIR 385
++SA D+ +++ V + + L F C
Sbjct: 94 SNLLVSASDDKTLKIWDVSSGKCLKTLKGH-------------------SNYVF-CCNFN 133
Query: 386 ERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAG 445
+ N++ +W ++ L+ P + V A + G+ V +
Sbjct: 134 PQS--NLIVSGSFDESVRIWDVKT----GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 187
Query: 446 GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF-K 504
G ++ SG + +D N V V +++A +K+WD+ K
Sbjct: 188 GLCRIWDTASGQCLKTLID-------DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 240
Query: 505 GRDLKS----RWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRI 560
G+ LK+ + E C +++ D+LV ++++ +V+K +GHTD +
Sbjct: 241 GKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY-IWNLQTKEIVQKLQGHTDVV 299
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 63.2 bits (152), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 109/212 (51%), Gaps = 23/212 (10%)
Query: 152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGXXXXXXXXXPALDVVAVGCSDGKIHVHNVR 211
N ++ S + +L++W++S+ K L KG P +++ G D + + +V+
Sbjct: 100 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 159
Query: 212 YDEELVTF-THSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR-LQSVIREAHDN 269
+ L T HS V+A+ F+ DG L+ S + G+ IW+ + L+++I + DN
Sbjct: 160 TGKCLKTLPAHS--DPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLIDD--DN 214
Query: 270 AIIS-LHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN--- 325
+S + F N +++A+ DN++K+W D + G + L+ +GH CI +AN
Sbjct: 215 PPVSFVKFSPNGKYILAATLDNTLKLW--DYSKG--KCLKTYTGHKNEKYCI--FANFSV 268
Query: 326 --GRHILSAGQDRAFRLFSVIQDQQSRELSQR 355
G+ I+S +D ++++ Q++E+ Q+
Sbjct: 269 TGGKWIVSGSEDNLVYIWNL----QTKEIVQK 296
Score = 59.3 bits (142), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 83/170 (48%), Gaps = 4/170 (2%)
Query: 460 GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF-KGRDLKSRWEVGCSL 518
G+Y E++ H + VA S + L++SA +K+WD G+ LK+ +
Sbjct: 73 GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 132
Query: 519 VKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD 578
++ + L+ + + D +R++DV + ++ H+D ++ F+ DG ++SS D
Sbjct: 133 FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 192
Query: 579 GSLRIWDVILARQIDAIHVDVS--ITALSLSPNMDVLATAHVDQNGVYLW 626
G RIWD + + + D + ++ + SPN + A +D N + LW
Sbjct: 193 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD-NTLKLW 241
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 84/170 (49%), Gaps = 15/170 (8%)
Query: 472 AHNGEVVGVACDSTNTLMISAGYHGDIKVWDF-KGRDLKSRWEVGCSLVKIVYHRVNG-- 528
AH+ V V + +L++S+ Y G ++WD G+ LK+ + V V NG
Sbjct: 169 AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKY 228
Query: 529 LLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFC----FS-EDGKWLLSSGMDGSLRI 583
+LA D+ ++L+D + ++ + GH + +C FS GKW++S D + I
Sbjct: 229 ILAATLDN-TLKLWDYSKGKCLKTYTGHKNE--KYCIFANFSVTGGKWIVSGSEDNLVYI 285
Query: 584 WDVILARQIDAI--HVDVSITALSLSPNMDVLATAHVDQNG-VYLWVNRC 630
W++ + + H DV I+ + P +++A+A ++ + + LW + C
Sbjct: 286 WNLQTKEIVQKLQGHTDVVIST-ACHPTENIIASAALENDKTIKLWKSDC 334
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/165 (21%), Positives = 73/165 (44%), Gaps = 23/165 (13%)
Query: 468 RSNYA-------HNGEVVGVACDSTNTLMISAGYHGDIKVWD-FKGRDLKSRWEVGCSLV 519
+ NYA H V V + S+ IK+W + G+ K+ +
Sbjct: 32 KPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS 91
Query: 520 KIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFC--FSEDGKWLLSSGM 577
+ + + LL + +DD ++++DV + + ++ +GH++ + FC F+ ++S
Sbjct: 92 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV--FCCNFNPQSNLIVSGSF 149
Query: 578 DGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNG 622
D S+RIWDV + + +L + D ++ H +++G
Sbjct: 150 DESVRIWDVKTGKCLK-----------TLPAHSDPVSAVHFNRDG 183
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/116 (21%), Positives = 60/116 (51%), Gaps = 2/116 (1%)
Query: 472 AHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK-GRDLKSRWEVGCSLVKIVYHRVNGLL 530
H+ V + + L++S + +++WD K G+ LK+ + + ++R L+
Sbjct: 127 GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLI 186
Query: 531 ATVADDLVIRLFDVVALRMVRKFEGHTDRITDFC-FSEDGKWLLSSGMDGSLRIWD 585
+ + D + R++D + + ++ + F FS +GK++L++ +D +L++WD
Sbjct: 187 VSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 242
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 6/75 (8%)
Query: 555 GHTDRITDFCFSEDGKWLLSSGMDGSLRIW---DVILARQIDAIHVDVSITALSLSPNMD 611
GHT ++ FS +G+WL SS D ++IW D + I + +S A S N+
Sbjct: 43 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 102
Query: 612 VLATAHVDQNGVYLW 626
V A+ D + +W
Sbjct: 103 VSAS---DDKTLKIW 114
Score = 35.0 bits (79), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 59/300 (19%), Positives = 113/300 (37%), Gaps = 43/300 (14%)
Query: 266 AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN 325
H A+ S+ F N L S+SAD IK+W DG + + SGH + + ++
Sbjct: 43 GHTKAVSSVKFSPNGEWLASSSADKLIKIW--GAYDG--KFEKTISGHKLGISDVAWSSD 98
Query: 326 GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARXXXXXXXXXXXXPVIAFDCAEIR 385
++SA D+ +++ V + + L F C
Sbjct: 99 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHS-------------------NYVF-CCNFN 138
Query: 386 ERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAG 445
+ N++ +W ++ L+ P + V A + G+ V +
Sbjct: 139 PQS--NLIVSGSFDESVRIWDVKT----GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 192
Query: 446 GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF-K 504
G ++ SG + +D N V V +++A +K+WD+ K
Sbjct: 193 GLCRIWDTASGQCLKTLID-------DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 245
Query: 505 GRDLKS----RWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRI 560
G+ LK+ + E C +++ D+LV ++++ +V+K +GHTD +
Sbjct: 246 GKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY-IWNLQTKEIVQKLQGHTDVV 304
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 63.2 bits (152), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 109/212 (51%), Gaps = 23/212 (10%)
Query: 152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGXXXXXXXXXPALDVVAVGCSDGKIHVHNVR 211
N ++ S + +L++W++S+ K L KG P +++ G D + + +V+
Sbjct: 84 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 143
Query: 212 YDEELVTF-THSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR-LQSVIREAHDN 269
+ L T HS V+A+ F+ DG L+ S + G+ IW+ + L+++I + DN
Sbjct: 144 TGKCLKTLPAHS--DPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLIDD--DN 198
Query: 270 AIIS-LHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN--- 325
+S + F N +++A+ DN++K+W D + G + L+ +GH CI +AN
Sbjct: 199 PPVSFVKFSPNGKYILAATLDNTLKLW--DYSKG--KCLKTYTGHKNEKYCI--FANFSV 252
Query: 326 --GRHILSAGQDRAFRLFSVIQDQQSRELSQR 355
G+ I+S +D ++++ Q++E+ Q+
Sbjct: 253 TGGKWIVSGSEDNLVYIWNL----QTKEIVQK 280
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 83/170 (48%), Gaps = 4/170 (2%)
Query: 460 GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF-KGRDLKSRWEVGCSL 518
G+Y E++ H + VA S + L++SA +K+WD G+ LK+ +
Sbjct: 57 GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 116
Query: 519 VKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD 578
++ + L+ + + D +R++DV + ++ H+D ++ F+ DG ++SS D
Sbjct: 117 FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 176
Query: 579 GSLRIWDVILARQIDAIHVDVS--ITALSLSPNMDVLATAHVDQNGVYLW 626
G RIWD + + + D + ++ + SPN + A +D N + LW
Sbjct: 177 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD-NTLKLW 225
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 64/339 (18%), Positives = 138/339 (40%), Gaps = 56/339 (16%)
Query: 307 LRFR-SGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARXXX 365
L+F +GH+ ++F NG + S+ D+ +++ + + +S +
Sbjct: 21 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG------- 73
Query: 366 XXXXXXXXXPVIAFDCAEIRERDWC---NVVTCHMDTAQAYVWRLQNFVLGEHILRPCPE 422
I + W N++ D +W + + L+
Sbjct: 74 ------------------ISDVAWSSDSNLLVSASDDKTLKIWDVSS----GKCLKTLKG 111
Query: 423 NPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVAC 482
+ V C + N V G+ + +++++G ++ AH+ V V
Sbjct: 112 HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG--------KCLKTLPAHSDPVSAVHF 163
Query: 483 DSTNTLMISAGYHGDIKVWDF-KGRDLKSRWEVGCSLVKIVYHRVNG--LLATVADDLVI 539
+ +L++S+ Y G ++WD G+ LK+ + V V NG +LA D+ +
Sbjct: 164 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN-TL 222
Query: 540 RLFDVVALRMVRKFEGHTDRITDFCFSED-----GKWLLSSGMDGSLRIWDVILARQIDA 594
+L+D + ++ + GH + +C + GKW++S D + IW++ +
Sbjct: 223 KLWDYSKGKCLKTYTGHKNE--KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 280
Query: 595 I--HVDVSITALSLSPNMDVLATAHVDQNG-VYLWVNRC 630
+ H DV I+ + P +++A+A ++ + + LW + C
Sbjct: 281 LQGHTDVVIST-ACHPTENIIASAALENDKTIKLWKSDC 318
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 63/138 (45%), Gaps = 12/138 (8%)
Query: 468 RSNYA-------HNGEVVGVACDSTNTLMISAGYHGDIKVWD-FKGRDLKSRWEVGCSLV 519
+ NYA H V V + S+ IK+W + G+ K+ +
Sbjct: 16 KPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS 75
Query: 520 KIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFC--FSEDGKWLLSSGM 577
+ + + LL + +DD ++++DV + + ++ +GH++ + FC F+ ++S
Sbjct: 76 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV--FCCNFNPQSNLIVSGSF 133
Query: 578 DGSLRIWDVILARQIDAI 595
D S+RIWDV + + +
Sbjct: 134 DESVRIWDVKTGKCLKTL 151
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 59/300 (19%), Positives = 113/300 (37%), Gaps = 43/300 (14%)
Query: 266 AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN 325
H A+ S+ F N L S+SAD IK+W DG + + SGH + + ++
Sbjct: 27 GHTKAVSSVKFSPNGEWLASSSADKLIKIW--GAYDG--KFEKTISGHKLGISDVAWSSD 82
Query: 326 GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARXXXXXXXXXXXXPVIAFDCAEIR 385
++SA D+ +++ V + + L F C
Sbjct: 83 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHS-------------------NYVF-CCNFN 122
Query: 386 ERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAG 445
+ N++ +W ++ L+ P + V A + G+ V +
Sbjct: 123 PQS--NLIVSGSFDESVRIWDVKT----GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 176
Query: 446 GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF-K 504
G ++ SG + +D N V V +++A +K+WD+ K
Sbjct: 177 GLCRIWDTASGQCLKTLID-------DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 229
Query: 505 GRDLKS----RWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRI 560
G+ LK+ + E C +++ D+LV ++++ +V+K +GHTD +
Sbjct: 230 GKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY-IWNLQTKEIVQKLQGHTDVV 288
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 63.2 bits (152), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 109/212 (51%), Gaps = 23/212 (10%)
Query: 152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGXXXXXXXXXPALDVVAVGCSDGKIHVHNVR 211
N ++ S + +L++W++S+ K L KG P +++ G D + + +V+
Sbjct: 84 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 143
Query: 212 YDEELVTF-THSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR-LQSVIREAHDN 269
+ L T HS V+A+ F+ DG L+ S + G+ IW+ + L+++I + DN
Sbjct: 144 TGKCLKTLPAHS--DPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLIDD--DN 198
Query: 270 AIIS-LHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN--- 325
+S + F N +++A+ DN++K+W D + G + L+ +GH CI +AN
Sbjct: 199 PPVSFVKFSPNGKYILAATLDNTLKLW--DYSKG--KCLKTYTGHKNEKYCI--FANFSV 252
Query: 326 --GRHILSAGQDRAFRLFSVIQDQQSRELSQR 355
G+ I+S +D ++++ Q++E+ Q+
Sbjct: 253 TGGKWIVSGSEDNLVYIWNL----QTKEIVQK 280
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 83/170 (48%), Gaps = 4/170 (2%)
Query: 460 GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF-KGRDLKSRWEVGCSL 518
G+Y E++ H + VA S + L++SA +K+WD G+ LK+ +
Sbjct: 57 GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 116
Query: 519 VKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD 578
++ + L+ + + D +R++DV + ++ H+D ++ F+ DG ++SS D
Sbjct: 117 FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 176
Query: 579 GSLRIWDVILARQIDAIHVDVS--ITALSLSPNMDVLATAHVDQNGVYLW 626
G RIWD + + + D + ++ + SPN + A +D N + LW
Sbjct: 177 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD-NTLKLW 225
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 64/339 (18%), Positives = 138/339 (40%), Gaps = 56/339 (16%)
Query: 307 LRFR-SGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARXXX 365
L+F +GH+ ++F NG + S+ D+ +++ + + +S +
Sbjct: 21 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG------- 73
Query: 366 XXXXXXXXXPVIAFDCAEIRERDWC---NVVTCHMDTAQAYVWRLQNFVLGEHILRPCPE 422
I + W N++ D +W + + L+
Sbjct: 74 ------------------ISDVAWSSDSNLLVSASDDKTLKIWDVSS----GKCLKTLKG 111
Query: 423 NPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVAC 482
+ V C + N V G+ + +++++G ++ AH+ V V
Sbjct: 112 HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG--------KCLKTLPAHSDPVSAVHF 163
Query: 483 DSTNTLMISAGYHGDIKVWDF-KGRDLKSRWEVGCSLVKIVYHRVNG--LLATVADDLVI 539
+ +L++S+ Y G ++WD G+ LK+ + V V NG +LA D+ +
Sbjct: 164 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN-TL 222
Query: 540 RLFDVVALRMVRKFEGHTDRITDFCFSED-----GKWLLSSGMDGSLRIWDVILARQIDA 594
+L+D + ++ + GH + +C + GKW++S D + IW++ +
Sbjct: 223 KLWDYSKGKCLKTYTGHKNE--KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 280
Query: 595 I--HVDVSITALSLSPNMDVLATAHVDQN-GVYLWVNRC 630
+ H DV I+ + P +++A+A ++ + + LW + C
Sbjct: 281 LQGHTDVVIST-ACHPTENIIASAALENDKTIKLWKSDC 318
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 63/138 (45%), Gaps = 12/138 (8%)
Query: 468 RSNYA-------HNGEVVGVACDSTNTLMISAGYHGDIKVWD-FKGRDLKSRWEVGCSLV 519
+ NYA H V V + S+ IK+W + G+ K+ +
Sbjct: 16 KPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS 75
Query: 520 KIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFC--FSEDGKWLLSSGM 577
+ + + LL + +DD ++++DV + + ++ +GH++ + FC F+ ++S
Sbjct: 76 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV--FCCNFNPQSNLIVSGSF 133
Query: 578 DGSLRIWDVILARQIDAI 595
D S+RIWDV + + +
Sbjct: 134 DESVRIWDVKTGKCLKTL 151
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 59/300 (19%), Positives = 113/300 (37%), Gaps = 43/300 (14%)
Query: 266 AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN 325
H A+ S+ F N L S+SAD IK+W DG + + SGH + + ++
Sbjct: 27 GHTKAVSSVKFSPNGEWLASSSADKLIKIW--GAYDG--KFEKTISGHKLGISDVAWSSD 82
Query: 326 GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARXXXXXXXXXXXXPVIAFDCAEIR 385
++SA D+ +++ V + + L F C
Sbjct: 83 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHS-------------------NYVF-CCNFN 122
Query: 386 ERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAG 445
+ N++ +W ++ L+ P + V A + G+ V +
Sbjct: 123 PQS--NLIVSGSFDESVRIWDVKT----GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 176
Query: 446 GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF-K 504
G ++ SG + +D N V V +++A +K+WD+ K
Sbjct: 177 GLCRIWDTASGQCLKTLID-------DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 229
Query: 505 GRDLKS----RWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRI 560
G+ LK+ + E C +++ D+LV ++++ +V+K +GHTD +
Sbjct: 230 GKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY-IWNLQTKEIVQKLQGHTDVV 288
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 63.2 bits (152), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 109/212 (51%), Gaps = 23/212 (10%)
Query: 152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGXXXXXXXXXPALDVVAVGCSDGKIHVHNVR 211
N ++ S + +L++W++S+ K L KG P +++ G D + + +V+
Sbjct: 83 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 142
Query: 212 YDEELVTF-THSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR-LQSVIREAHDN 269
+ L T HS V+A+ F+ DG L+ S + G+ IW+ + L+++I + DN
Sbjct: 143 TGKCLKTLPAHS--DPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLIDD--DN 197
Query: 270 AIIS-LHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN--- 325
+S + F N +++A+ DN++K+W D + G + L+ +GH CI +AN
Sbjct: 198 PPVSFVKFSPNGKYILAATLDNTLKLW--DYSKG--KCLKTYTGHKNEKYCI--FANFSV 251
Query: 326 --GRHILSAGQDRAFRLFSVIQDQQSRELSQR 355
G+ I+S +D ++++ Q++E+ Q+
Sbjct: 252 TGGKWIVSGSEDNLVYIWNL----QTKEIVQK 279
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 83/170 (48%), Gaps = 4/170 (2%)
Query: 460 GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF-KGRDLKSRWEVGCSL 518
G+Y E++ H + VA S + L++SA +K+WD G+ LK+ +
Sbjct: 56 GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 115
Query: 519 VKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD 578
++ + L+ + + D +R++DV + ++ H+D ++ F+ DG ++SS D
Sbjct: 116 FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 175
Query: 579 GSLRIWDVILARQIDAIHVDVS--ITALSLSPNMDVLATAHVDQNGVYLW 626
G RIWD + + + D + ++ + SPN + A +D N + LW
Sbjct: 176 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD-NTLKLW 224
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 64/339 (18%), Positives = 138/339 (40%), Gaps = 56/339 (16%)
Query: 307 LRFR-SGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARXXX 365
L+F +GH+ ++F NG + S+ D+ +++ + + +S +
Sbjct: 20 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG------- 72
Query: 366 XXXXXXXXXPVIAFDCAEIRERDWC---NVVTCHMDTAQAYVWRLQNFVLGEHILRPCPE 422
I + W N++ D +W + + L+
Sbjct: 73 ------------------ISDVAWSSDSNLLVSASDDKTLKIWDVSS----GKCLKTLKG 110
Query: 423 NPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVAC 482
+ V C + N V G+ + +++++G ++ AH+ V V
Sbjct: 111 HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG--------KCLKTLPAHSDPVSAVHF 162
Query: 483 DSTNTLMISAGYHGDIKVWDF-KGRDLKSRWEVGCSLVKIVYHRVNG--LLATVADDLVI 539
+ +L++S+ Y G ++WD G+ LK+ + V V NG +LA D+ +
Sbjct: 163 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN-TL 221
Query: 540 RLFDVVALRMVRKFEGHTDRITDFCFSED-----GKWLLSSGMDGSLRIWDVILARQIDA 594
+L+D + ++ + GH + +C + GKW++S D + IW++ +
Sbjct: 222 KLWDYSKGKCLKTYTGHKNE--KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 279
Query: 595 I--HVDVSITALSLSPNMDVLATAHVDQN-GVYLWVNRC 630
+ H DV I+ + P +++A+A ++ + + LW + C
Sbjct: 280 LQGHTDVVIST-ACHPTENIIASAALENDKTIKLWKSDC 317
Score = 42.7 bits (99), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 63/138 (45%), Gaps = 12/138 (8%)
Query: 468 RSNYA-------HNGEVVGVACDSTNTLMISAGYHGDIKVWD-FKGRDLKSRWEVGCSLV 519
+ NYA H V V + S+ IK+W + G+ K+ +
Sbjct: 15 KPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS 74
Query: 520 KIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFC--FSEDGKWLLSSGM 577
+ + + LL + +DD ++++DV + + ++ +GH++ + FC F+ ++S
Sbjct: 75 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV--FCCNFNPQSNLIVSGSF 132
Query: 578 DGSLRIWDVILARQIDAI 595
D S+RIWDV + + +
Sbjct: 133 DESVRIWDVKTGKCLKTL 150
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 59/300 (19%), Positives = 113/300 (37%), Gaps = 43/300 (14%)
Query: 266 AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN 325
H A+ S+ F N L S+SAD IK+W DG + + SGH + + ++
Sbjct: 26 GHTKAVSSVKFSPNGEWLASSSADKLIKIW--GAYDG--KFEKTISGHKLGISDVAWSSD 81
Query: 326 GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARXXXXXXXXXXXXPVIAFDCAEIR 385
++SA D+ +++ V + + L F C
Sbjct: 82 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHS-------------------NYVF-CCNFN 121
Query: 386 ERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAG 445
+ N++ +W ++ L+ P + V A + G+ V +
Sbjct: 122 PQS--NLIVSGSFDESVRIWDVKT----GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 175
Query: 446 GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF-K 504
G ++ SG + +D N V V +++A +K+WD+ K
Sbjct: 176 GLCRIWDTASGQCLKTLID-------DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 228
Query: 505 GRDLKS----RWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRI 560
G+ LK+ + E C +++ D+LV ++++ +V+K +GHTD +
Sbjct: 229 GKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY-IWNLQTKEIVQKLQGHTDVV 287
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 63.2 bits (152), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 109/212 (51%), Gaps = 23/212 (10%)
Query: 152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGXXXXXXXXXPALDVVAVGCSDGKIHVHNVR 211
N ++ S + +L++W++S+ K L KG P +++ G D + + +V+
Sbjct: 81 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Query: 212 YDEELVTF-THSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR-LQSVIREAHDN 269
+ L T HS V+A+ F+ DG L+ S + G+ IW+ + L+++I + DN
Sbjct: 141 TGKCLKTLPAHS--DPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLIDD--DN 195
Query: 270 AIIS-LHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN--- 325
+S + F N +++A+ DN++K+W D + G + L+ +GH CI +AN
Sbjct: 196 PPVSFVKFSPNGKYILAATLDNTLKLW--DYSKG--KCLKTYTGHKNEKYCI--FANFSV 249
Query: 326 --GRHILSAGQDRAFRLFSVIQDQQSRELSQR 355
G+ I+S +D ++++ Q++E+ Q+
Sbjct: 250 TGGKWIVSGSEDNLVYIWNL----QTKEIVQK 277
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 83/170 (48%), Gaps = 4/170 (2%)
Query: 460 GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF-KGRDLKSRWEVGCSL 518
G+Y E++ H + VA S + L++SA +K+WD G+ LK+ +
Sbjct: 54 GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 113
Query: 519 VKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD 578
++ + L+ + + D +R++DV + ++ H+D ++ F+ DG ++SS D
Sbjct: 114 FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 173
Query: 579 GSLRIWDVILARQIDAIHVDVS--ITALSLSPNMDVLATAHVDQNGVYLW 626
G RIWD + + + D + ++ + SPN + A +D N + LW
Sbjct: 174 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD-NTLKLW 222
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 61/329 (18%), Positives = 133/329 (40%), Gaps = 55/329 (16%)
Query: 307 LRFR-SGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARXXX 365
L+F +GH+ ++F NG + S+ D+ +++ + + +S +
Sbjct: 18 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG------- 70
Query: 366 XXXXXXXXXPVIAFDCAEIRERDWC---NVVTCHMDTAQAYVWRLQNFVLGEHILRPCPE 422
I + W N++ D +W + + L+
Sbjct: 71 ------------------ISDVAWSSDSNLLVSASDDKTLKIWDVSS----GKCLKTLKG 108
Query: 423 NPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVAC 482
+ V C + N V G+ + +++++G ++ AH+ V V
Sbjct: 109 HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG--------KCLKTLPAHSDPVSAVHF 160
Query: 483 DSTNTLMISAGYHGDIKVWDF-KGRDLKSRWEVGCSLVKIVYHRVNG--LLATVADDLVI 539
+ +L++S+ Y G ++WD G+ LK+ + V V NG +LA D+ +
Sbjct: 161 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN-TL 219
Query: 540 RLFDVVALRMVRKFEGHTDRITDFCFSED-----GKWLLSSGMDGSLRIWDVILARQIDA 594
+L+D + ++ + GH + +C + GKW++S D + IW++ +
Sbjct: 220 KLWDYSKGKCLKTYTGHKNE--KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 277
Query: 595 I--HVDVSITALSLSPNMDVLATAHVDQN 621
+ H DV I+ + P +++A+A ++ +
Sbjct: 278 LQGHTDVVIST-ACHPTENIIASAALEND 305
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/128 (21%), Positives = 63/128 (49%), Gaps = 16/128 (12%)
Query: 498 IKVWD-FKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGH 556
IK+W + G+ K+ + + + + LL + +DD ++++DV + + ++ +GH
Sbjct: 50 IKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGH 109
Query: 557 TDRITDFC--FSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLA 614
++ + FC F+ ++S D S+RIWDV + + +L + D ++
Sbjct: 110 SNYV--FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK-----------TLPAHSDPVS 156
Query: 615 TAHVDQNG 622
H +++G
Sbjct: 157 AVHFNRDG 164
Score = 35.0 bits (79), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 6/75 (8%)
Query: 555 GHTDRITDFCFSEDGKWLLSSGMDGSLRIW---DVILARQIDAIHVDVSITALSLSPNMD 611
GHT ++ FS +G+WL SS D ++IW D + I + +S A S N+
Sbjct: 24 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 83
Query: 612 VLATAHVDQNGVYLW 626
V A+ D + +W
Sbjct: 84 VSAS---DDKTLKIW 95
Score = 34.7 bits (78), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 59/300 (19%), Positives = 113/300 (37%), Gaps = 43/300 (14%)
Query: 266 AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN 325
H A+ S+ F N L S+SAD IK+W DG + + SGH + + ++
Sbjct: 24 GHTKAVSSVKFSPNGEWLASSSADKLIKIW--GAYDG--KFEKTISGHKLGISDVAWSSD 79
Query: 326 GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARXXXXXXXXXXXXPVIAFDCAEIR 385
++SA D+ +++ V + + L F C
Sbjct: 80 SNLLVSASDDKTLKIWDVSSGKCLKTLKGH-------------------SNYVF-CCNFN 119
Query: 386 ERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAG 445
+ N++ +W ++ L+ P + V A + G+ V +
Sbjct: 120 PQS--NLIVSGSFDESVRIWDVKT----GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 173
Query: 446 GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF-K 504
G ++ SG + +D N V V +++A +K+WD+ K
Sbjct: 174 GLCRIWDTASGQCLKTLID-------DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 226
Query: 505 GRDLKS----RWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRI 560
G+ LK+ + E C +++ D+LV ++++ +V+K +GHTD +
Sbjct: 227 GKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY-IWNLQTKEIVQKLQGHTDVV 285
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 63.2 bits (152), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 109/212 (51%), Gaps = 23/212 (10%)
Query: 152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGXXXXXXXXXPALDVVAVGCSDGKIHVHNVR 211
N ++ S + +L++W++S+ K L KG P +++ G D + + +V+
Sbjct: 81 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Query: 212 YDEELVTF-THSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR-LQSVIREAHDN 269
+ L T HS V+A+ F+ DG L+ S + G+ IW+ + L+++I + DN
Sbjct: 141 TGKCLKTLPAHS--DPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLIDD--DN 195
Query: 270 AIIS-LHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN--- 325
+S + F N +++A+ DN++K+W D + G + L+ +GH CI +AN
Sbjct: 196 PPVSFVKFSPNGKYILAATLDNTLKLW--DYSKG--KCLKTYTGHKNEKYCI--FANFSV 249
Query: 326 --GRHILSAGQDRAFRLFSVIQDQQSRELSQR 355
G+ I+S +D ++++ Q++E+ Q+
Sbjct: 250 TGGKWIVSGSEDNLVYIWNL----QTKEIVQK 277
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 83/170 (48%), Gaps = 4/170 (2%)
Query: 460 GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF-KGRDLKSRWEVGCSL 518
G+Y E++ H + VA S + L++SA +K+WD G+ LK+ +
Sbjct: 54 GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 113
Query: 519 VKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD 578
++ + L+ + + D +R++DV + ++ H+D ++ F+ DG ++SS D
Sbjct: 114 FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 173
Query: 579 GSLRIWDVILARQIDAIHVDVS--ITALSLSPNMDVLATAHVDQNGVYLW 626
G RIWD + + + D + ++ + SPN + A +D N + LW
Sbjct: 174 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD-NTLKLW 222
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 61/329 (18%), Positives = 133/329 (40%), Gaps = 55/329 (16%)
Query: 307 LRFR-SGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARXXX 365
L+F +GH+ ++F NG + S+ D+ +++ + + +S +
Sbjct: 18 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG------- 70
Query: 366 XXXXXXXXXPVIAFDCAEIRERDWC---NVVTCHMDTAQAYVWRLQNFVLGEHILRPCPE 422
I + W N++ D +W + + L+
Sbjct: 71 ------------------ISDVAWSSDSNLLVSASDDKTLKIWDVSS----GKCLKTLKG 108
Query: 423 NPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVAC 482
+ V C + N V G+ + +++++G ++ AH+ V V
Sbjct: 109 HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG--------KCLKTLPAHSDPVSAVHF 160
Query: 483 DSTNTLMISAGYHGDIKVWDF-KGRDLKSRWEVGCSLVKIVYHRVNG--LLATVADDLVI 539
+ +L++S+ Y G ++WD G+ LK+ + V V NG +LA D+ +
Sbjct: 161 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN-TL 219
Query: 540 RLFDVVALRMVRKFEGHTDRITDFCFSED-----GKWLLSSGMDGSLRIWDVILARQIDA 594
+L+D + ++ + GH + +C + GKW++S D + IW++ +
Sbjct: 220 KLWDYSKGKCLKTYTGHKNE--KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQK 277
Query: 595 I--HVDVSITALSLSPNMDVLATAHVDQN 621
+ H DV I+ + P +++A+A ++ +
Sbjct: 278 LQGHTDVVIST-ACHPTENIIASAALEND 305
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/128 (21%), Positives = 63/128 (49%), Gaps = 16/128 (12%)
Query: 498 IKVWD-FKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGH 556
IK+W + G+ K+ + + + + LL + +DD ++++DV + + ++ +GH
Sbjct: 50 IKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGH 109
Query: 557 TDRITDFC--FSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLA 614
++ + FC F+ ++S D S+RIWDV + + +L + D ++
Sbjct: 110 SNYV--FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK-----------TLPAHSDPVS 156
Query: 615 TAHVDQNG 622
H +++G
Sbjct: 157 AVHFNRDG 164
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 6/75 (8%)
Query: 555 GHTDRITDFCFSEDGKWLLSSGMDGSLRIW---DVILARQIDAIHVDVSITALSLSPNMD 611
GHT ++ FS +G+WL SS D ++IW D + I + +S A S N+
Sbjct: 24 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 83
Query: 612 VLATAHVDQNGVYLW 626
V A+ D + +W
Sbjct: 84 VSAS---DDKTLKIW 95
Score = 34.7 bits (78), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 59/300 (19%), Positives = 113/300 (37%), Gaps = 43/300 (14%)
Query: 266 AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN 325
H A+ S+ F N L S+SAD IK+W DG + + SGH + + ++
Sbjct: 24 GHTKAVSSVKFSPNGEWLASSSADKLIKIW--GAYDG--KFEKTISGHKLGISDVAWSSD 79
Query: 326 GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARXXXXXXXXXXXXPVIAFDCAEIR 385
++SA D+ +++ V + + L F C
Sbjct: 80 SNLLVSASDDKTLKIWDVSSGKCLKTLKGH-------------------SNYVF-CCNFN 119
Query: 386 ERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAG 445
+ N++ +W ++ L+ P + V A + G+ V +
Sbjct: 120 PQS--NLIVSGSFDESVRIWDVKT----GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 173
Query: 446 GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF-K 504
G ++ SG + +D N V V +++A +K+WD+ K
Sbjct: 174 GLCRIWDTASGQCLKTLID-------DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 226
Query: 505 GRDLKS----RWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRI 560
G+ LK+ + E C +++ D+LV ++++ +V+K +GHTD +
Sbjct: 227 GKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY-IWNLQTKEIVQKLQGHTDVV 285
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 63.2 bits (152), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 109/212 (51%), Gaps = 23/212 (10%)
Query: 152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGXXXXXXXXXPALDVVAVGCSDGKIHVHNVR 211
N ++ S + +L++W++S+ K L KG P +++ G D + + +V+
Sbjct: 102 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 161
Query: 212 YDEELVTF-THSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR-LQSVIREAHDN 269
+ L T HS V+A+ F+ DG L+ S + G+ IW+ + L+++I + DN
Sbjct: 162 TGKCLKTLPAHS--DPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLIDD--DN 216
Query: 270 AIIS-LHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN--- 325
+S + F N +++A+ DN++K+W D + G + L+ +GH CI +AN
Sbjct: 217 PPVSFVKFSPNGKYILAATLDNTLKLW--DYSKG--KCLKTYTGHKNEKYCI--FANFSV 270
Query: 326 --GRHILSAGQDRAFRLFSVIQDQQSRELSQR 355
G+ I+S +D ++++ Q++E+ Q+
Sbjct: 271 TGGKWIVSGSEDNLVYIWNL----QTKEIVQK 298
Score = 59.3 bits (142), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 83/170 (48%), Gaps = 4/170 (2%)
Query: 460 GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF-KGRDLKSRWEVGCSL 518
G+Y E++ H + VA S + L++SA +K+WD G+ LK+ +
Sbjct: 75 GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 134
Query: 519 VKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD 578
++ + L+ + + D +R++DV + ++ H+D ++ F+ DG ++SS D
Sbjct: 135 FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 194
Query: 579 GSLRIWDVILARQIDAIHVDVS--ITALSLSPNMDVLATAHVDQNGVYLW 626
G RIWD + + + D + ++ + SPN + A +D N + LW
Sbjct: 195 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD-NTLKLW 243
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 84/170 (49%), Gaps = 15/170 (8%)
Query: 472 AHNGEVVGVACDSTNTLMISAGYHGDIKVWDF-KGRDLKSRWEVGCSLVKIVYHRVNG-- 528
AH+ V V + +L++S+ Y G ++WD G+ LK+ + V V NG
Sbjct: 171 AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKY 230
Query: 529 LLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFC----FS-EDGKWLLSSGMDGSLRI 583
+LA D+ ++L+D + ++ + GH + +C FS GKW++S D + I
Sbjct: 231 ILAATLDN-TLKLWDYSKGKCLKTYTGHKNE--KYCIFANFSVTGGKWIVSGSEDNLVYI 287
Query: 584 WDVILARQIDAI--HVDVSITALSLSPNMDVLATAHVDQNG-VYLWVNRC 630
W++ + + H DV I+ + P +++A+A ++ + + LW + C
Sbjct: 288 WNLQTKEIVQKLQGHTDVVIST-ACHPTENIIASAALENDKTIKLWKSDC 336
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/165 (21%), Positives = 73/165 (44%), Gaps = 23/165 (13%)
Query: 468 RSNYA-------HNGEVVGVACDSTNTLMISAGYHGDIKVWD-FKGRDLKSRWEVGCSLV 519
+ NYA H V V + S+ IK+W + G+ K+ +
Sbjct: 34 KPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS 93
Query: 520 KIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFC--FSEDGKWLLSSGM 577
+ + + LL + +DD ++++DV + + ++ +GH++ + FC F+ ++S
Sbjct: 94 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV--FCCNFNPQSNLIVSGSF 151
Query: 578 DGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNG 622
D S+RIWDV + + +L + D ++ H +++G
Sbjct: 152 DESVRIWDVKTGKCLK-----------TLPAHSDPVSAVHFNRDG 185
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/116 (21%), Positives = 60/116 (51%), Gaps = 2/116 (1%)
Query: 472 AHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK-GRDLKSRWEVGCSLVKIVYHRVNGLL 530
H+ V + + L++S + +++WD K G+ LK+ + + ++R L+
Sbjct: 129 GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLI 188
Query: 531 ATVADDLVIRLFDVVALRMVRKFEGHTDRITDFC-FSEDGKWLLSSGMDGSLRIWD 585
+ + D + R++D + + ++ + F FS +GK++L++ +D +L++WD
Sbjct: 189 VSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 244
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Query: 553 FEGHTDRITDFCFSEDGKWLLSSGMDGSLRIW---DVILARQIDAIHVDVSITALSLSPN 609
GHT ++ FS +G+WL SS D ++IW D + I + +S A S N
Sbjct: 43 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 102
Query: 610 MDVLATAHVDQNGVYLW 626
+ V A+ D + +W
Sbjct: 103 LLVSAS---DDKTLKIW 116
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 59/300 (19%), Positives = 113/300 (37%), Gaps = 43/300 (14%)
Query: 266 AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN 325
H A+ S+ F N L S+SAD IK+W DG + + SGH + + ++
Sbjct: 45 GHTKAVSSVKFSPNGEWLASSSADKLIKIW--GAYDG--KFEKTISGHKLGISDVAWSSD 100
Query: 326 GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARXXXXXXXXXXXXPVIAFDCAEIR 385
++SA D+ +++ V + + L F C
Sbjct: 101 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHS-------------------NYVF-CCNFN 140
Query: 386 ERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAG 445
+ N++ +W ++ L+ P + V A + G+ V +
Sbjct: 141 PQS--NLIVSGSFDESVRIWDVKT----GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 194
Query: 446 GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF-K 504
G ++ SG + +D N V V +++A +K+WD+ K
Sbjct: 195 GLCRIWDTASGQCLKTLID-------DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 247
Query: 505 GRDLKS----RWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRI 560
G+ LK+ + E C +++ D+LV ++++ +V+K +GHTD +
Sbjct: 248 GKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY-IWNLQTKEIVQKLQGHTDVV 306
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 63.2 bits (152), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 109/212 (51%), Gaps = 23/212 (10%)
Query: 152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGXXXXXXXXXPALDVVAVGCSDGKIHVHNVR 211
N ++ S + +L++W++S+ K L KG P +++ G D + + +V+
Sbjct: 81 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Query: 212 YDEELVTF-THSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR-LQSVIREAHDN 269
+ L T HS V+A+ F+ DG L+ S + G+ IW+ + L+++I + DN
Sbjct: 141 TGKCLKTLPAHS--DPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLIDD--DN 195
Query: 270 AIIS-LHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN--- 325
+S + F N +++A+ DN++K+W D + G + L+ +GH CI +AN
Sbjct: 196 PPVSFVKFSPNGKYILAATLDNTLKLW--DYSKG--KCLKTYTGHKNEKYCI--FANFSV 249
Query: 326 --GRHILSAGQDRAFRLFSVIQDQQSRELSQR 355
G+ I+S +D ++++ Q++E+ Q+
Sbjct: 250 TGGKWIVSGSEDNLVYIWNL----QTKEIVQK 277
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 83/170 (48%), Gaps = 4/170 (2%)
Query: 460 GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF-KGRDLKSRWEVGCSL 518
G+Y E++ H + VA S + L++SA +K+WD G+ LK+ +
Sbjct: 54 GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 113
Query: 519 VKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD 578
++ + L+ + + D +R++DV + ++ H+D ++ F+ DG ++SS D
Sbjct: 114 FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 173
Query: 579 GSLRIWDVILARQIDAIHVDVS--ITALSLSPNMDVLATAHVDQNGVYLW 626
G RIWD + + + D + ++ + SPN + A +D N + LW
Sbjct: 174 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD-NTLKLW 222
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 83/170 (48%), Gaps = 15/170 (8%)
Query: 472 AHNGEVVGVACDSTNTLMISAGYHGDIKVWDF-KGRDLKSRWEVGCSLVKIVYHRVNG-- 528
AH+ V V + +L++S+ Y G ++WD G+ LK+ + V V NG
Sbjct: 150 AHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKY 209
Query: 529 LLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSED-----GKWLLSSGMDGSLRI 583
+LA D+ ++L+D + ++ + GH + +C + GKW++S D + I
Sbjct: 210 ILAATLDN-TLKLWDYSKGKCLKTYTGHKNE--KYCIFANFSVTGGKWIVSGSEDNLVYI 266
Query: 584 WDVILARQIDAI--HVDVSITALSLSPNMDVLATAHVDQNG-VYLWVNRC 630
W++ + + H DV I+ + P +++A+A ++ + + LW + C
Sbjct: 267 WNLQTKEIVQKLQGHTDVVIST-ACHPTENIIASAALENDKTIKLWKSDC 315
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/128 (21%), Positives = 63/128 (49%), Gaps = 16/128 (12%)
Query: 498 IKVWD-FKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGH 556
IK+W + G+ K+ + + + + LL + +DD ++++DV + + ++ +GH
Sbjct: 50 IKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGH 109
Query: 557 TDRITDFC--FSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLA 614
++ + FC F+ ++S D S+RIWDV + + +L + D ++
Sbjct: 110 SNYV--FCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLK-----------TLPAHSDPVS 156
Query: 615 TAHVDQNG 622
H +++G
Sbjct: 157 AVHFNRDG 164
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/116 (21%), Positives = 60/116 (51%), Gaps = 2/116 (1%)
Query: 472 AHNGEVVGVACDSTNTLMISAGYHGDIKVWDFK-GRDLKSRWEVGCSLVKIVYHRVNGLL 530
H+ V + + L++S + +++WD K G+ LK+ + + ++R L+
Sbjct: 108 GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLI 167
Query: 531 ATVADDLVIRLFDVVALRMVRKFEGHTDRITDFC-FSEDGKWLLSSGMDGSLRIWD 585
+ + D + R++D + + ++ + F FS +GK++L++ +D +L++WD
Sbjct: 168 VSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 223
Score = 37.7 bits (86), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 23/106 (21%), Positives = 52/106 (49%), Gaps = 5/106 (4%)
Query: 530 LATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILA 589
LA + D +I+++ + + GH I+D +S D L+S+ D +L+IWDV
Sbjct: 41 LAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG 100
Query: 590 RQIDAIHVDVS-ITALSLSPNMDVLATAHVDQNGVYLW---VNRCM 631
+ + + + + + +P +++ + D++ V +W +C+
Sbjct: 101 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES-VRIWDVKTGKCL 145
Score = 33.5 bits (75), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 6/75 (8%)
Query: 555 GHTDRITDFCFSEDGKWLLSSGMDGSLRIW---DVILARQIDAIHVDVSITALSLSPNMD 611
GHT ++ FS +G+WL +S D ++IW D + I + +S A S N+
Sbjct: 24 GHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLL 83
Query: 612 VLATAHVDQNGVYLW 626
V A+ D + +W
Sbjct: 84 VSAS---DDKTLKIW 95
Score = 33.5 bits (75), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 58/300 (19%), Positives = 113/300 (37%), Gaps = 43/300 (14%)
Query: 266 AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN 325
H A+ S+ F N L ++SAD IK+W DG + + SGH + + ++
Sbjct: 24 GHTKAVSSVKFSPNGEWLAASSADKLIKIW--GAYDG--KFEKTISGHKLGISDVAWSSD 79
Query: 326 GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARXXXXXXXXXXXXPVIAFDCAEIR 385
++SA D+ +++ V + + L F C
Sbjct: 80 SNLLVSASDDKTLKIWDVSSGKCLKTLKGH-------------------SNYVF-CCNFN 119
Query: 386 ERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAG 445
+ N++ +W ++ L+ P + V A + G+ V +
Sbjct: 120 PQS--NLIVSGSFDESVRIWDVKT----GKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 173
Query: 446 GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF-K 504
G ++ SG + +D N V V +++A +K+WD+ K
Sbjct: 174 GLCRIWDTASGQCLKTLID-------DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 226
Query: 505 GRDLKS----RWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRI 560
G+ LK+ + E C +++ D+LV ++++ +V+K +GHTD +
Sbjct: 227 GKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY-IWNLQTKEIVQKLQGHTDVV 285
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 62.8 bits (151), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 108/212 (50%), Gaps = 23/212 (10%)
Query: 152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGXXXXXXXXXPALDVVAVGCSDGKIHVHNVR 211
N ++ S + +L++W++S+ K L KG P +++ G D + + +V+
Sbjct: 81 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Query: 212 YDEELVTF-THSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR-LQSVIREAHDN 269
L T HS V+A+ F+ DG L+ S + G+ IW+ + L+++I + DN
Sbjct: 141 TGMCLKTLPAHS--DPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLIDD--DN 195
Query: 270 AIIS-LHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN--- 325
+S + F N +++A+ DN++K+W D + G + L+ +GH CI +AN
Sbjct: 196 PPVSFVKFSPNGKYILAATLDNTLKLW--DYSKG--KCLKTYTGHKNEKYCI--FANFSV 249
Query: 326 --GRHILSAGQDRAFRLFSVIQDQQSRELSQR 355
G+ I+S +D ++++ Q++E+ Q+
Sbjct: 250 TGGKWIVSGSEDNMVYIWNL----QTKEIVQK 277
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 82/170 (48%), Gaps = 4/170 (2%)
Query: 460 GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF-KGRDLKSRWEVGCSL 518
G+Y E++ H + VA S + L++SA +K+WD G+ LK+ +
Sbjct: 54 GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 113
Query: 519 VKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD 578
++ + L+ + + D +R++DV ++ H+D ++ F+ DG ++SS D
Sbjct: 114 FCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 173
Query: 579 GSLRIWDVILARQIDAIHVDVS--ITALSLSPNMDVLATAHVDQNGVYLW 626
G RIWD + + + D + ++ + SPN + A +D N + LW
Sbjct: 174 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD-NTLKLW 222
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 64/339 (18%), Positives = 138/339 (40%), Gaps = 55/339 (16%)
Query: 306 LLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARXXX 365
L+ +GH+ ++F NG + S+ D+ +++ + + +S +
Sbjct: 18 LMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG------- 70
Query: 366 XXXXXXXXXPVIAFDCAEIRERDWC---NVVTCHMDTAQAYVWRLQNFVLGEHILRPCPE 422
I + W N++ D +W + + L+
Sbjct: 71 ------------------ISDVAWSSDSNLLVSASDDKTLKIWDVSS----GKCLKTLKG 108
Query: 423 NPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVAC 482
+ V C + N V G+ + +++++G M ++ AH+ V V
Sbjct: 109 HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG--------MCLKTLPAHSDPVSAVHF 160
Query: 483 DSTNTLMISAGYHGDIKVWDF-KGRDLKSRWEVGCSLVKIVYHRVNG--LLATVADDLVI 539
+ +L++S+ Y G ++WD G+ LK+ + V V NG +LA D+ +
Sbjct: 161 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDN-TL 219
Query: 540 RLFDVVALRMVRKFEGHTDRITDFCFSED-----GKWLLSSGMDGSLRIWDVILARQIDA 594
+L+D + ++ + GH + +C + GKW++S D + IW++ +
Sbjct: 220 KLWDYSKGKCLKTYTGHKNE--KYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQK 277
Query: 595 I--HVDVSITALSLSPNMDVLATAHVDQN-GVYLWVNRC 630
+ H DV I+ + P +++A+A ++ + + LW + C
Sbjct: 278 LQGHTDVVIST-ACHPTENIIASAALENDKTIKLWKSDC 315
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 60/129 (46%), Gaps = 12/129 (9%)
Query: 468 RSNYA-------HNGEVVGVACDSTNTLMISAGYHGDIKVWD-FKGRDLKSRWEVGCSLV 519
+ NYA H V V + S+ IK+W + G+ K+ +
Sbjct: 13 KPNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS 72
Query: 520 KIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFC--FSEDGKWLLSSGM 577
+ + + LL + +DD ++++DV + + ++ +GH++ + FC F+ ++S
Sbjct: 73 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV--FCCNFNPQSNLIVSGSF 130
Query: 578 DGSLRIWDV 586
D S+RIWDV
Sbjct: 131 DESVRIWDV 139
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 59/302 (19%), Positives = 116/302 (38%), Gaps = 47/302 (15%)
Query: 266 AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN 325
H A+ S+ F N L S+SAD IK+W DG + + SGH + + ++
Sbjct: 24 GHTKAVSSVKFSPNGEWLASSSADKLIKIW--GAYDG--KFEKTISGHKLGISDVAWSSD 79
Query: 326 GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARXXXXXXXXXXXXPVIAFDCAEIR 385
++SA D+ +++ V + + L F C
Sbjct: 80 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHS-------------------NYVF-CCNFN 119
Query: 386 ERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAG 445
+ N++ +W ++ + L+ P + V A + G+ V +
Sbjct: 120 PQS--NLIVSGSFDESVRIWDVKTGMC----LKTLPAHSDPVSAVHFNRDGSLIVSSSYD 173
Query: 446 GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF-K 504
G ++ SG + +D N V V +++A +K+WD+ K
Sbjct: 174 GLCRIWDTASGQCLKTLID-------DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK 226
Query: 505 GRDLKS----RWEVGCSLVKIVYHRVNG--LLATVADDLVIRLFDVVALRMVRKFEGHTD 558
G+ LK+ + E C V G + + ++D ++ ++++ +V+K +GHTD
Sbjct: 227 GKCLKTYTGHKNEKYCIFANF---SVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTD 283
Query: 559 RI 560
+
Sbjct: 284 VV 285
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/206 (23%), Positives = 95/206 (46%), Gaps = 16/206 (7%)
Query: 427 VKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN 486
V+ +S+ G FA+ G+ G + ++L +G+S R H +V+ VA N
Sbjct: 433 VEDVVLSSDGQFALSGSWDGELRLWDLAAGVST--------RRFVGHTKDVLSVAFSLDN 484
Query: 487 TLMISAGYHGDIKVWDFKGRDLKSRWEVG------CSLVKIVYHRVNGLLATVADDLVIR 540
++SA IK+W+ G + E G S V+ + + + + + D ++
Sbjct: 485 RQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVK 544
Query: 541 LFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS 600
++++ ++ GHT ++ S DG S G DG + +WD+ +++ ++ +
Sbjct: 545 VWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSV 604
Query: 601 ITALSLSPNMDVLATAHVDQNGVYLW 626
I AL SPN L A ++G+ +W
Sbjct: 605 IHALCFSPNRYWLCAAT--EHGIKIW 628
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 80/387 (20%), Positives = 127/387 (32%), Gaps = 107/387 (27%)
Query: 227 VTALAFSSDGQPLLASGASSGVISIWNLEK---------RRLQSVIREAHDNAIISLHFF 277
VTA+A D ++ S + I +W L K RRL D + S F
Sbjct: 385 VTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQF 444
Query: 278 ANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRA 337
A +S S D +++W R + GH+ L + F + R I+SA +DR
Sbjct: 445 A-----LSGSWDGELRLWDLAAGVSTRRFV----GHTKDVLSVAFSLDNRQIVSASRDRT 495
Query: 338 FRLFSVIQDQQS--RELSQRHVAKRARXXXXXXXXXXXXPVIAFDCAEIRERDWCNVVTC 395
+L++ + + + E + H RDW + V
Sbjct: 496 IKLWNTLGECKYTISEGGEGH------------------------------RDWVSCVRF 525
Query: 396 HMDTAQ-----------AYVWRLQNFVLGEHILRPCPENPTA-VKACTISACGNFAVLGT 443
+T Q VW L N LR T V +S G+ G
Sbjct: 526 SPNTLQPTIVSASWDKTVKVWNLSNCK-----LRSTLAGHTGYVSTVAVSPDGSLCASGG 580
Query: 444 AGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF 503
G + ++L G ++ V+ C S N + A IK+WD
Sbjct: 581 KDGVVLLWDLAEG----------KKLYSLEANSVIHALCFSPNRYWLCAATEHGIKIWDL 630
Query: 504 KGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDF 563
+ + ++ +DL + L A + T R +
Sbjct: 631 ESK-------------------------SIVEDLKVDL-KAEAEKADNSGPAATKRKVIY 664
Query: 564 C----FSEDGKWLLSSGMDGSLRIWDV 586
C +S DG L S DG +R+W +
Sbjct: 665 CTSLNWSADGSTLFSGYTDGVIRVWGI 691
Score = 37.0 bits (84), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 46/225 (20%), Positives = 88/225 (39%), Gaps = 15/225 (6%)
Query: 142 TCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLY-----EFKGWGXXXXXXXXXPALDVV 196
T I P + ++ S++ S+ LW ++ K Y G
Sbjct: 386 TAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFA 445
Query: 197 AVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNL-- 254
G DG++ + ++ F + V ++AFS D + ++ S + I +WN
Sbjct: 446 LSGSWDGELRLWDLAAGVSTRRFVGHTKD-VLSVAFSLDNRQIV-SASRDRTIKLWNTLG 503
Query: 255 EKRRLQSVIREAHDNAIISLHFFAN--EPVLMSASADNSIKMWIFDTTDGDPRLLRFRSG 312
E + S E H + + + F N +P ++SAS D ++K+W +L +G
Sbjct: 504 ECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNC----KLRSTLAG 559
Query: 313 HSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHV 357
H+ + +G S G+D L+ + + ++ L V
Sbjct: 560 HTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSV 604
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 107/212 (50%), Gaps = 23/212 (10%)
Query: 152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGXXXXXXXXXPALDVVAVGCSDGKIHVHNVR 211
N ++ S + +L++W++S+ K L KG P +++ G D + + +V+
Sbjct: 81 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Query: 212 YDEELVTF-THSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRR-LQSVIREAHDN 269
L T HS V+A+ F+ DG L+ S + G+ IW+ + L+++I + DN
Sbjct: 141 TGMCLKTLPAHS--DPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLIDD--DN 195
Query: 270 AIIS-LHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN--- 325
+S + F N +++A+ DN +K+W D + G + L+ +GH CI +AN
Sbjct: 196 PPVSFVKFSPNGKYILAATLDNDLKLW--DYSKG--KCLKTYTGHKNEKYCI--FANFSV 249
Query: 326 --GRHILSAGQDRAFRLFSVIQDQQSRELSQR 355
G+ I+S +D ++++ Q++E+ Q+
Sbjct: 250 TGGKWIVSGSEDNMVYIWNL----QTKEIVQK 277
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 82/170 (48%), Gaps = 4/170 (2%)
Query: 460 GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF-KGRDLKSRWEVGCSL 518
G+Y E++ H + VA S + L++SA +K+WD G+ LK+ +
Sbjct: 54 GAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV 113
Query: 519 VKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD 578
++ + L+ + + D +R++DV ++ H+D ++ F+ DG ++SS D
Sbjct: 114 FCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD 173
Query: 579 GSLRIWDVILARQIDAIHVDVS--ITALSLSPNMDVLATAHVDQNGVYLW 626
G RIWD + + + D + ++ + SPN + A +D N + LW
Sbjct: 174 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD-NDLKLW 222
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 66/340 (19%), Positives = 139/340 (40%), Gaps = 57/340 (16%)
Query: 306 LLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARXXX 365
L+ +GH+ ++F NG + S+ D+ +++ + + +S +
Sbjct: 18 LMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG------- 70
Query: 366 XXXXXXXXXPVIAFDCAEIRERDWC---NVVTCHMDTAQAYVWRLQNFVLGEHILRPCPE 422
I + W N++ D +W + + L+
Sbjct: 71 ------------------ISDVAWSSDSNLLVSASDDKTLKIWDVSS----GKCLKTLKG 108
Query: 423 NPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVAC 482
+ V C + N V G+ + +++++G M ++ AH+ V V
Sbjct: 109 HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG--------MCLKTLPAHSDPVSAVHF 160
Query: 483 DSTNTLMISAGYHGDIKVWDF-KGRDLKSRWEVGCSLVKIVYHRVNG---LLATVADDLV 538
+ +L++S+ Y G ++WD G+ LK+ + V V NG L AT+ +DL
Sbjct: 161 NRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDL- 219
Query: 539 IRLFDVVALRMVRKFEGHTDRITDFCFSED-----GKWLLSSGMDGSLRIWDVILARQID 593
+L+D + ++ + GH + +C + GKW++S D + IW++ +
Sbjct: 220 -KLWDYSKGKCLKTYTGHKNE--KYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQ 276
Query: 594 AI--HVDVSITALSLSPNMDVLATAHVDQN-GVYLWVNRC 630
+ H DV I+ + P +++A+A ++ + + LW + C
Sbjct: 277 KLQGHTDVVIST-ACHPTENIIASAALENDKTIKLWKSDC 315
Score = 42.7 bits (99), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 60/129 (46%), Gaps = 12/129 (9%)
Query: 468 RSNYA-------HNGEVVGVACDSTNTLMISAGYHGDIKVWD-FKGRDLKSRWEVGCSLV 519
+ NYA H V V + S+ IK+W + G+ K+ +
Sbjct: 13 KPNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS 72
Query: 520 KIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFC--FSEDGKWLLSSGM 577
+ + + LL + +DD ++++DV + + ++ +GH++ + FC F+ ++S
Sbjct: 73 DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV--FCCNFNPQSNLIVSGSF 130
Query: 578 DGSLRIWDV 586
D S+RIWDV
Sbjct: 131 DESVRIWDV 139
Score = 37.4 bits (85), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 60/302 (19%), Positives = 117/302 (38%), Gaps = 47/302 (15%)
Query: 266 AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN 325
H A+ S+ F N L S+SAD IK+W DG + + SGH + + ++
Sbjct: 24 GHTKAVSSVKFSPNGEWLASSSADKLIKIW--GAYDG--KFEKTISGHKLGISDVAWSSD 79
Query: 326 GRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARXXXXXXXXXXXXPVIAFDCAEIR 385
++SA D+ +++ V + + L F C
Sbjct: 80 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHS-------------------NYVF-CCNFN 119
Query: 386 ERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAG 445
+ N++ +W ++ + L+ P + V A + G+ V +
Sbjct: 120 PQS--NLIVSGSFDESVRIWDVKTGMC----LKTLPAHSDPVSAVHFNRDGSLIVSSSYD 173
Query: 446 GWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF-K 504
G ++ SG + +D N V V +++A D+K+WD+ K
Sbjct: 174 GLCRIWDTASGQCLKTLID-------DDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSK 226
Query: 505 GRDLKS----RWEVGCSLVKIVYHRVNG--LLATVADDLVIRLFDVVALRMVRKFEGHTD 558
G+ LK+ + E C V G + + ++D ++ ++++ +V+K +GHTD
Sbjct: 227 GKCLKTYTGHKNEKYCIFANF---SVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTD 283
Query: 559 RI 560
+
Sbjct: 284 VV 285
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 60/110 (54%), Gaps = 2/110 (1%)
Query: 518 LVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGM 577
+ ++++H V ++ + ++D I+++D R +GHTD + D F GK L S
Sbjct: 111 VTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSA 170
Query: 578 DGSLRIWDVILARQIDAIHV-DVSITALSLSPNMDVLATAHVDQNGVYLW 626
D ++++WD I +H D +++++S+ PN D + +A D+ + +W
Sbjct: 171 DMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKT-IKMW 219
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 71/159 (44%), Gaps = 5/159 (3%)
Query: 472 AHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVK-IVYHRVNGLL 530
H V V ++M+SA IKVWD++ D + + V+ I + LL
Sbjct: 106 GHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLL 165
Query: 531 ATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILAR 590
A+ + D+ I+L+D +R GH ++ +G ++S+ D ++++W+V
Sbjct: 166 ASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGY 225
Query: 591 QIDAIHVDVSITALSLSPNMD--VLATAHVDQNGVYLWV 627
+ + + PN D ++A+ DQ V +WV
Sbjct: 226 CVKTFTGHREWVRM-VRPNQDGTLIASCSNDQT-VRVWV 262
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 77/173 (44%), Gaps = 14/173 (8%)
Query: 191 PALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRG---AVTALAFSSDGQPLLASGASSG 247
P V+ D I V +D E F +++G +V ++F G+ LLAS ++
Sbjct: 118 PVFSVMVSASEDATIKV----WDYETGDFERTLKGHTDSVQDISFDHSGK-LLASCSADM 172
Query: 248 VISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLL 307
I +W+ + + HD+ + S+ N ++SAS D +IKMW T +
Sbjct: 173 TIKLWDFQGFECIRTMH-GHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTG----YCV 227
Query: 308 RFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQ-RHVAK 359
+ +GH +R +G I S D+ R++ V + EL + RHV +
Sbjct: 228 KTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVE 280
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/258 (17%), Positives = 106/258 (41%), Gaps = 31/258 (12%)
Query: 103 GEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGS 162
G+ + S D + +W F+G E GH D + IM P+ + ++ S++ +
Sbjct: 162 GKLLASCSADMTIKLWDFQGFECIRTMHGH---DHNVSSVSIM-PNG--DHIVSASRDKT 215
Query: 163 LQLWNISTKKKLYEFKG---W---------GXXXXXXXXXPALDVVAVGCSDGKIHVHNV 210
+++W + T + F G W G + V V + K +
Sbjct: 216 IKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREH 275
Query: 211 RYDEELVTF----THSMRGAVTALAFSSDGQP--LLASGASSGVISIWNLEKRR-LQSVI 263
R+ E +++ ++S T G+P L SG+ I +W++ L +++
Sbjct: 276 RHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLV 335
Query: 264 REAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFY 323
HDN + + F + ++S + D ++++W + + R ++ + H + F+
Sbjct: 336 --GHDNWVRGVLFHSGGKFILSCADDKTLRVWDYK----NKRCMKTLNAHEHFVTSLDFH 389
Query: 324 ANGRHILSAGQDRAFRLF 341
++++ D+ +++
Sbjct: 390 KTAPYVVTGSVDQTVKVW 407
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 59/129 (45%), Gaps = 2/129 (1%)
Query: 467 ERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRV 526
ER+ H V ++ D + L+ S IK+WDF+G + V V
Sbjct: 143 ERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMP 202
Query: 527 NG-LLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWD 585
NG + + + D I++++V V+ F GH + + ++DG + S D ++R+W
Sbjct: 203 NGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVW- 261
Query: 586 VILARQIDA 594
V+ ++ A
Sbjct: 262 VVATKECKA 270
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/129 (19%), Positives = 53/129 (41%), Gaps = 20/129 (15%)
Query: 469 SNYAHNGEVVGVACDSTNT---LMISAGYHGDIKVWDFK---------GRDLKSRWEVGC 516
S+Y+ E G + ++S IK+WD G D W G
Sbjct: 288 SSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHD---NWVRG- 343
Query: 517 SLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSG 576
+++H + + ADD +R++D R ++ H +T F + ++++
Sbjct: 344 ----VLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGS 399
Query: 577 MDGSLRIWD 585
+D ++++W+
Sbjct: 400 VDQTVKVWE 408
Score = 33.1 bits (74), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Query: 266 AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYAN 325
H + + + F V++SAS D +IK+W ++T D R GH+ I F +
Sbjct: 106 GHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGD----FERTLKGHTDSVQDISFDHS 161
Query: 326 GRHILSAGQDRAFRLF 341
G+ + S D +L+
Sbjct: 162 GKLLASCSADMTIKLW 177
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 73/172 (42%), Gaps = 8/172 (4%)
Query: 461 SYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCS--- 517
S LD R NY + +++ C +I G + +WD + + E+ S
Sbjct: 89 SQLDCLNRDNYIRSCKLLPDGC-----TLIVGGEASTLSIWDLAAPTPRIKAELTSSAPA 143
Query: 518 LVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGM 577
+ + + + D I ++D+ +VR+F+GHTD + S DG L + G+
Sbjct: 144 CYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGL 203
Query: 578 DGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNR 629
D ++R WD+ RQ+ I +L P + LA N L VN+
Sbjct: 204 DNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNK 255
Score = 36.2 bits (82), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 66/308 (21%), Positives = 116/308 (37%), Gaps = 65/308 (21%)
Query: 91 RHSAKVNLLLLFGEHILSIDID-----------GNMFIWAFKGIEENLAPVGHVKL--DD 137
RH+ ++N L GE + ++ I G + +W N +PV + D
Sbjct: 40 RHARQINTLN-HGEVVCAVTISNPTRHVYTGGKGCVKVWDISH-PGNKSPVSQLDCLNRD 97
Query: 138 KFTPTCIMHPDTYLNKVIVGSQEGSLQLWNIS--TKKKLYEFKGWGXXXXXXXXXPALDV 195
+ +C + PD +IVG + +L +W+++ T + E P V
Sbjct: 98 NYIRSCKLLPDGC--TLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKV 155
Query: 196 VAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNL- 254
CSDG I V ++ +++ LV + + S+DG L G + V S W+L
Sbjct: 156 CFSCCSDGNIAVWDL-HNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRS-WDLR 213
Query: 255 EKRRLQ--------------------SVIREA------------------HDNAIISLHF 276
E R+LQ +V E+ H++ ++SL F
Sbjct: 214 EGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKF 273
Query: 277 FANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDR 336
+S DN + W T G F+S S+ L + ++I++ D+
Sbjct: 274 AYCGKWFVSTGKDNLLNAW--RTPYG---ASIFQSKESSSVLSCDISVDDKYIVTGSGDK 328
Query: 337 AFRLFSVI 344
++ VI
Sbjct: 329 KATVYEVI 336
Score = 35.0 bits (79), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 55/122 (45%), Gaps = 11/122 (9%)
Query: 235 DGQPLLASGASSGVISIWNL--EKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSI 292
DG L+ G +S +SIW+L R+++ + + A +L + V S +D +I
Sbjct: 108 DGCTLIVGGEAS-TLSIWDLAAPTPRIKAELTSSAP-ACYALAISPDSKVCFSCCSDGNI 165
Query: 293 KMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSREL 352
+W + L+R GH+ CI +G + + G D R + + ++ R+L
Sbjct: 166 AVWDLH----NQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDL---REGRQL 218
Query: 353 SQ 354
Q
Sbjct: 219 QQ 220
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 44/199 (22%), Positives = 91/199 (45%), Gaps = 20/199 (10%)
Query: 427 VKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN 486
V+ CT++A G +A+ + + +++ +G + ++ H +V+ V D
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFV--------GHKSDVMSVDIDKKA 119
Query: 487 TLMISAGYHGDIKVWDFKGRDLKS-----RWEVGCSLVKIVYHRVNG----LLATVADDL 537
+++IS IKVW KG+ L + W S V++V + + + +D
Sbjct: 120 SMIISGSRDKTIKVWTIKGQCLATLLGHNDW---VSQVRVVPNEKADDDSVTIISAGNDK 176
Query: 538 VIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHV 597
+++ +++ ++ F GH I S DG + S+G DG + +W++ + + +
Sbjct: 177 MVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA 236
Query: 598 DVSITALSLSPNMDVLATA 616
+ +L+ SPN LA A
Sbjct: 237 QDEVFSLAFSPNRYWLAAA 255
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 73/345 (21%), Positives = 130/345 (37%), Gaps = 60/345 (17%)
Query: 265 EAHDNAIISLHFFANEP-VLMSASADNSIKMWIFDTTD---GDPRLLRFRSGHSAPPLCI 320
E H+ + SL A +P +L+SAS D ++ W D G P +R GHS
Sbjct: 14 EGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVP--VRSFKGHSHIVQDC 71
Query: 321 RFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARXXXXXXXXXXXXPVIAFD 380
A+G + LSA D+ RL+ V + E QR V ++ V++ D
Sbjct: 72 TLTADGAYALSASWDKTLRLWDV----ATGETYQRFVGHKS-------------DVMSVD 114
Query: 381 CAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHI--------LRPCPENPTAVKACTI 432
++ +++ D VW ++ L + +R P + TI
Sbjct: 115 I----DKKASMIISGSRDKT-IKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTI 169
Query: 433 SACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISA 492
+ GN + ++ +NL ++ HN + + TL+ SA
Sbjct: 170 ISAGNDKM-------VKAWNLNQFQIEADFI--------GHNSNINTLTASPDGTLIASA 214
Query: 493 GYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVR- 551
G G+I +W+ + + + + LA A I++F + +V
Sbjct: 215 GKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLA-AATATGIKVFSLDPQYLVDD 273
Query: 552 ---KFEGHTD----RITDFCFSEDGKWLLSSGMDGSLRIWDVILA 589
+F G++ +S DG+ L + D +R+W V+ A
Sbjct: 274 LRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318
Score = 36.2 bits (82), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 69/149 (46%), Gaps = 11/149 (7%)
Query: 154 VIVGSQEGSLQLWNISTKKKLYEFKGWGXXXXXXXXXPALDVVAVGCSDGKIHVHNVRYD 213
+I + ++ WN++ + +F G P ++A DG+I + N+
Sbjct: 169 IISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAK 228
Query: 214 EELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIR-------EA 266
+ + +T S + V +LAFS + L A+ A+ I +++L+ + L +R +A
Sbjct: 229 KAM--YTLSAQDEVFSLAFSPNRYWLAAATATG--IKVFSLDPQYLVDDLRPEFAGYSKA 284
Query: 267 HDNAIISLHFFANEPVLMSASADNSIKMW 295
+ +SL + A+ L + DN I++W
Sbjct: 285 AEPHAVSLAWSADGQTLFAGYTDNVIRVW 313
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 59/124 (47%), Gaps = 10/124 (8%)
Query: 225 GAVTALAFSSDGQP-LLASGASSGVISIWNL--EKRRLQSVIR--EAHDNAIISLHFFAN 279
G VT+LA S+ GQP LL S + + W L + ++ +R + H + + A+
Sbjct: 18 GWVTSLATSA-GQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTAD 76
Query: 280 EPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFR 339
+SAS D ++++W T + R + GH + + + I+S +D+ +
Sbjct: 77 GAYALSASWDKTLRLWDVATGETYQRFV----GHKSDVMSVDIDKKASMIISGSRDKTIK 132
Query: 340 LFSV 343
++++
Sbjct: 133 VWTI 136
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 83/197 (42%), Gaps = 18/197 (9%)
Query: 427 VKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN 486
V IS+ G FA+ G+ G + ++L +G + R H +V+ VA S N
Sbjct: 66 VSDVVISSDGQFALSGSWDGTLRLWDLTTG--------TTTRRFVGHTKDVLSVAFSSDN 117
Query: 487 TLMISAGYHGDIKVWDFKG-------RDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVI 539
++S IK+W+ G + S W S V+ + N ++ + D ++
Sbjct: 118 RQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEW---VSCVRFSPNSSNPIIVSCGWDKLV 174
Query: 540 RLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDV 599
+++++ ++ GHT + S DG S G DG +WD+ + + +
Sbjct: 175 KVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGD 234
Query: 600 SITALSLSPNMDVLATA 616
I AL SPN L A
Sbjct: 235 IINALCFSPNRYWLCAA 251
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 50/245 (20%), Positives = 89/245 (36%), Gaps = 53/245 (21%)
Query: 102 FGEHILSIDIDGNMFIWAFKGIEENLA-PVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQE 160
F + ILS D + +W E N P ++ F ++ D + GS +
Sbjct: 27 FPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQF--ALSGSWD 84
Query: 161 GSLQLWNISTKKKLYEFKGWGXXXXXXXXXPALDVVAVGCSDGKIHVHNVRYDEELVTFT 220
G+L+LW+++T F G H +
Sbjct: 85 GTLRLWDLTTGTTTRRFVG--------------------------HTKD----------- 107
Query: 221 HSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFAN- 279
V ++AFSSD + ++ SG+ I +WN +V E+H + + F N
Sbjct: 108 ------VLSVAFSSDNRQIV-SGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNS 160
Query: 280 -EPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAF 338
P+++S D +K+W + +L GH+ + +G S G+D
Sbjct: 161 SNPIIVSCGWDKLVKVWNL----ANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQA 216
Query: 339 RLFSV 343
L+ +
Sbjct: 217 MLWDL 221
Score = 37.7 bits (86), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 23/36 (63%)
Query: 551 RKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDV 586
R GH+ ++D S DG++ LS DG+LR+WD+
Sbjct: 57 RALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDL 92
Score = 34.7 bits (78), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 64/163 (39%), Gaps = 13/163 (7%)
Query: 142 TCIMHPDTYLNKVIVGSQEGSL-QLWNISTKKKLYEFKGWGXXXXXXXXXPALDVVAVGC 200
+C+ N +IV L ++WN++ K G P + A G
Sbjct: 152 SCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGG 211
Query: 201 SDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLE----- 255
DG+ + ++ + L T + AL FS + L A+ S I IW+LE
Sbjct: 212 KDGQAMLWDLNEGKHLYTLDGG--DIINALCFSPNRYWLCAATGPS--IKIWDLEGKIIV 267
Query: 256 ---KRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMW 295
K+ + S +A SL + A+ L + DN +++W
Sbjct: 268 DELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVW 310
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 83/197 (42%), Gaps = 18/197 (9%)
Query: 427 VKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN 486
V IS+ G FA+ G+ G + ++L +G + R H +V+ VA S N
Sbjct: 89 VSDVVISSDGQFALSGSWDGTLRLWDLTTGTT--------TRRFVGHTKDVLSVAFSSDN 140
Query: 487 TLMISAGYHGDIKVWDFKG-------RDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVI 539
++S IK+W+ G + S W S V+ + N ++ + D ++
Sbjct: 141 RQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEW---VSCVRFSPNSSNPIIVSCGWDKLV 197
Query: 540 RLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDV 599
+++++ ++ GHT + S DG S G DG +WD+ + + +
Sbjct: 198 KVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGD 257
Query: 600 SITALSLSPNMDVLATA 616
I AL SPN L A
Sbjct: 258 IINALCFSPNRYWLCAA 274
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 50/245 (20%), Positives = 89/245 (36%), Gaps = 53/245 (21%)
Query: 102 FGEHILSIDIDGNMFIWAFKGIEENLA-PVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQE 160
F + ILS D + +W E N P ++ F ++ D + GS +
Sbjct: 50 FPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQF--ALSGSWD 107
Query: 161 GSLQLWNISTKKKLYEFKGWGXXXXXXXXXPALDVVAVGCSDGKIHVHNVRYDEELVTFT 220
G+L+LW+++T F G H +
Sbjct: 108 GTLRLWDLTTGTTTRRFVG--------------------------HTKD----------- 130
Query: 221 HSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFAN- 279
V ++AFSSD + ++ SG+ I +WN +V E+H + + F N
Sbjct: 131 ------VLSVAFSSDNRQIV-SGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNS 183
Query: 280 -EPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAF 338
P+++S D +K+W + +L GH+ + +G S G+D
Sbjct: 184 SNPIIVSCGWDKLVKVWNL----ANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQA 239
Query: 339 RLFSV 343
L+ +
Sbjct: 240 MLWDL 244
Score = 37.7 bits (86), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 23/36 (63%)
Query: 551 RKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDV 586
R GH+ ++D S DG++ LS DG+LR+WD+
Sbjct: 80 RALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDL 115
Score = 34.3 bits (77), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 64/163 (39%), Gaps = 13/163 (7%)
Query: 142 TCIMHPDTYLNKVIVGSQEGSL-QLWNISTKKKLYEFKGWGXXXXXXXXXPALDVVAVGC 200
+C+ N +IV L ++WN++ K G P + A G
Sbjct: 175 SCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGG 234
Query: 201 SDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLE----- 255
DG+ + ++ + L T + AL FS + L A+ S I IW+LE
Sbjct: 235 KDGQAMLWDLNEGKHLYTLDGG--DIINALCFSPNRYWLCAATGPS--IKIWDLEGKIIV 290
Query: 256 ---KRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMW 295
K+ + S +A SL + A+ L + DN +++W
Sbjct: 291 DELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVW 333
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 56.6 bits (135), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 44/199 (22%), Positives = 91/199 (45%), Gaps = 20/199 (10%)
Query: 427 VKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN 486
V+ CT++A G +A+ + + +++ +G + ++ H +V+ V D
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFV--------GHKSDVMSVDIDKKA 119
Query: 487 TLMISAGYHGDIKVWDFKGRDLKS-----RWEVGCSLVKIVYHRVNG----LLATVADDL 537
+++IS IKVW KG+ L + W S V++V + + + +D
Sbjct: 120 SMIISGSRDKTIKVWTIKGQCLATLLGHNDW---VSQVRVVPNEKADDDSVTIISAGNDK 176
Query: 538 VIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHV 597
+++ +++ ++ F GH I S DG + S+G DG + +W++ + + +
Sbjct: 177 MVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA 236
Query: 598 DVSITALSLSPNMDVLATA 616
+ +L+ SPN LA A
Sbjct: 237 QDEVFSLAFSPNRYWLAAA 255
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 71/340 (20%), Positives = 127/340 (37%), Gaps = 60/340 (17%)
Query: 265 EAHDNAIISLHFFANEP-VLMSASADNSIKMWIFDTTD---GDPRLLRFRSGHSAPPLCI 320
E H+ + SL A +P +L+SAS D ++ W D G P +R GHS
Sbjct: 14 EGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVP--VRSFKGHSHIVQDC 71
Query: 321 RFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARXXXXXXXXXXXXPVIAFD 380
A+G + LSA D+ RL+ V + E QR V ++ V++ D
Sbjct: 72 TLTADGAYALSASWDKTLRLWDV----ATGETYQRFVGHKS-------------DVMSVD 114
Query: 381 CAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHI--------LRPCPENPTAVKACTI 432
++ +++ D VW ++ L + +R P + TI
Sbjct: 115 I----DKKASMIISGSRDKT-IKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTI 169
Query: 433 SACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISA 492
+ GN + ++ +NL ++ HN + + TL+ SA
Sbjct: 170 ISAGNDKM-------VKAWNLNQFQIEADFI--------GHNSNINTLTASPDGTLIASA 214
Query: 493 GYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVR- 551
G G+I +W+ + + + + LA A I++F + +V
Sbjct: 215 GKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLA-AATATGIKVFSLDPQYLVDD 273
Query: 552 ---KFEGHTD----RITDFCFSEDGKWLLSSGMDGSLRIW 584
+F G++ +S DG+ L + D +R+W
Sbjct: 274 LRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 313
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 24/37 (64%)
Query: 550 VRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDV 586
VR F+GH+ + D + DG + LS+ D +LR+WDV
Sbjct: 58 VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDV 94
Score = 36.2 bits (82), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 69/149 (46%), Gaps = 11/149 (7%)
Query: 154 VIVGSQEGSLQLWNISTKKKLYEFKGWGXXXXXXXXXPALDVVAVGCSDGKIHVHNVRYD 213
+I + ++ WN++ + +F G P ++A DG+I + N+
Sbjct: 169 IISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAK 228
Query: 214 EELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIR-------EA 266
+ + +T S + V +LAFS + L A+ A+ I +++L+ + L +R +A
Sbjct: 229 KAM--YTLSAQDEVFSLAFSPNRYWLAAATATG--IKVFSLDPQYLVDDLRPEFAGYSKA 284
Query: 267 HDNAIISLHFFANEPVLMSASADNSIKMW 295
+ +SL + A+ L + DN I++W
Sbjct: 285 AEPHAVSLAWSADGQTLFAGYTDNVIRVW 313
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 59/124 (47%), Gaps = 10/124 (8%)
Query: 225 GAVTALAFSSDGQP-LLASGASSGVISIWNL--EKRRLQSVIR--EAHDNAIISLHFFAN 279
G VT+LA S+ GQP LL S + + W L + ++ +R + H + + A+
Sbjct: 18 GWVTSLATSA-GQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTAD 76
Query: 280 EPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFR 339
+SAS D ++++W T + R + GH + + + I+S +D+ +
Sbjct: 77 GAYALSASWDKTLRLWDVATGETYQRFV----GHKSDVMSVDIDKKASMIISGSRDKTIK 132
Query: 340 LFSV 343
++++
Sbjct: 133 VWTI 136
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 44/199 (22%), Positives = 91/199 (45%), Gaps = 20/199 (10%)
Query: 427 VKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN 486
V+ CT++A G +A+ + + +++ +G + ++ H +V+ V D
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFV--------GHKSDVMSVDIDKKA 119
Query: 487 TLMISAGYHGDIKVWDFKGRDLKS-----RWEVGCSLVKIVYHRVNG----LLATVADDL 537
+++IS IKVW KG+ L + W S V++V + + + +D
Sbjct: 120 SMIISGSRDKTIKVWTIKGQCLATLLGHNDW---VSQVRVVPNEKADDDSVTIISAGNDK 176
Query: 538 VIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHV 597
+++ +++ ++ F GH I S DG + S+G DG + +W++ + + +
Sbjct: 177 MVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA 236
Query: 598 DVSITALSLSPNMDVLATA 616
+ +L+ SPN LA A
Sbjct: 237 QDEVFSLAFSPNRYWLAAA 255
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 73/345 (21%), Positives = 130/345 (37%), Gaps = 60/345 (17%)
Query: 265 EAHDNAIISLHFFANEP-VLMSASADNSIKMWIFDTTD---GDPRLLRFRSGHSAPPLCI 320
E H+ + SL A +P +L+SAS D ++ W D G P +R GHS
Sbjct: 14 EGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVP--VRSFKGHSHIVQDC 71
Query: 321 RFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARXXXXXXXXXXXXPVIAFD 380
A+G + LSA D+ RL+ V + E QR V ++ V++ D
Sbjct: 72 TLTADGAYALSASWDKTLRLWDV----ATGETYQRFVGHKS-------------DVMSVD 114
Query: 381 CAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHI--------LRPCPENPTAVKACTI 432
++ +++ D VW ++ L + +R P + TI
Sbjct: 115 I----DKKASMIISGSRDKT-IKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTI 169
Query: 433 SACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISA 492
+ GN + ++ +NL ++ HN + + TL+ SA
Sbjct: 170 ISAGNDKM-------VKAWNLNQFQIEADFI--------GHNSNINTLTASPDGTLIASA 214
Query: 493 GYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVR- 551
G G+I +W+ + + + + LA A I++F + +V
Sbjct: 215 GKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLA-AATATGIKVFSLDPQYLVDD 273
Query: 552 ---KFEGHTD----RITDFCFSEDGKWLLSSGMDGSLRIWDVILA 589
+F G++ +S DG+ L + D +R+W V+ A
Sbjct: 274 LRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318
Score = 35.8 bits (81), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 69/149 (46%), Gaps = 11/149 (7%)
Query: 154 VIVGSQEGSLQLWNISTKKKLYEFKGWGXXXXXXXXXPALDVVAVGCSDGKIHVHNVRYD 213
+I + ++ WN++ + +F G P ++A DG+I + N+
Sbjct: 169 IISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAK 228
Query: 214 EELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIR-------EA 266
+ + +T S + V +LAFS + L A+ A+ I +++L+ + L +R +A
Sbjct: 229 KAM--YTLSAQDEVFSLAFSPNRYWLAAATATG--IKVFSLDPQYLVDDLRPEFAGYSKA 284
Query: 267 HDNAIISLHFFANEPVLMSASADNSIKMW 295
+ +SL + A+ L + DN I++W
Sbjct: 285 AEPHAVSLAWSADGQTLFAGYTDNVIRVW 313
Score = 34.7 bits (78), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 59/124 (47%), Gaps = 10/124 (8%)
Query: 225 GAVTALAFSSDGQP-LLASGASSGVISIWNL--EKRRLQSVIR--EAHDNAIISLHFFAN 279
G VT+LA S+ GQP LL S + + W L + ++ +R + H + + A+
Sbjct: 18 GWVTSLATSA-GQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTAD 76
Query: 280 EPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFR 339
+SAS D ++++W T + R + GH + + + I+S +D+ +
Sbjct: 77 GAYALSASWDKTLRLWDVATGETYQRFV----GHKSDVMSVDIDKKASMIISGSRDKTIK 132
Query: 340 LFSV 343
++++
Sbjct: 133 VWTI 136
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 44/199 (22%), Positives = 91/199 (45%), Gaps = 20/199 (10%)
Query: 427 VKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN 486
V+ CT++A G +A+ + + +++ +G + ++ H +V+ V D
Sbjct: 62 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFV--------GHKSDVMSVDIDKKA 113
Query: 487 TLMISAGYHGDIKVWDFKGRDLKS-----RWEVGCSLVKIVYHRVNG----LLATVADDL 537
+++IS IKVW KG+ L + W S V++V + + + +D
Sbjct: 114 SMIISGSRDKTIKVWTIKGQCLATLLGHNDW---VSQVRVVPNEKADDDSVTIISAGNDK 170
Query: 538 VIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHV 597
+++ +++ ++ F GH I S DG + S+G DG + +W++ + + +
Sbjct: 171 MVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA 230
Query: 598 DVSITALSLSPNMDVLATA 616
+ +L+ SPN LA A
Sbjct: 231 QDEVFSLAFSPNRYWLAAA 249
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 73/345 (21%), Positives = 130/345 (37%), Gaps = 60/345 (17%)
Query: 265 EAHDNAIISLHFFANEP-VLMSASADNSIKMWIFDTTD---GDPRLLRFRSGHSAPPLCI 320
E H+ + SL A +P +L+SAS D ++ W D G P +R GHS
Sbjct: 8 EGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVP--VRSFKGHSHIVQDC 65
Query: 321 RFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARXXXXXXXXXXXXPVIAFD 380
A+G + LSA D+ RL+ V + E QR V ++ V++ D
Sbjct: 66 TLTADGAYALSASWDKTLRLWDV----ATGETYQRFVGHKS-------------DVMSVD 108
Query: 381 CAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHI--------LRPCPENPTAVKACTI 432
++ +++ D VW ++ L + +R P + TI
Sbjct: 109 I----DKKASMIISGSRDKT-IKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTI 163
Query: 433 SACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISA 492
+ GN + ++ +NL ++ HN + + TL+ SA
Sbjct: 164 ISAGNDKM-------VKAWNLNQFQIEADFI--------GHNSNINTLTASPDGTLIASA 208
Query: 493 GYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVR- 551
G G+I +W+ + + + + LA A I++F + +V
Sbjct: 209 GKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLA-AATATGIKVFSLDPQYLVDD 267
Query: 552 ---KFEGHTD----RITDFCFSEDGKWLLSSGMDGSLRIWDVILA 589
+F G++ +S DG+ L + D +R+W V+ A
Sbjct: 268 LRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 312
Score = 36.2 bits (82), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 69/149 (46%), Gaps = 11/149 (7%)
Query: 154 VIVGSQEGSLQLWNISTKKKLYEFKGWGXXXXXXXXXPALDVVAVGCSDGKIHVHNVRYD 213
+I + ++ WN++ + +F G P ++A DG+I + N+
Sbjct: 163 IISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAK 222
Query: 214 EELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIR-------EA 266
+ + +T S + V +LAFS + L A+ A+ I +++L+ + L +R +A
Sbjct: 223 KAM--YTLSAQDEVFSLAFSPNRYWLAAATATG--IKVFSLDPQYLVDDLRPEFAGYSKA 278
Query: 267 HDNAIISLHFFANEPVLMSASADNSIKMW 295
+ +SL + A+ L + DN I++W
Sbjct: 279 AEPHAVSLAWSADGQTLFAGYTDNVIRVW 307
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 59/124 (47%), Gaps = 10/124 (8%)
Query: 225 GAVTALAFSSDGQP-LLASGASSGVISIWNL--EKRRLQSVIR--EAHDNAIISLHFFAN 279
G VT+LA S+ GQP LL S + + W L + ++ +R + H + + A+
Sbjct: 12 GWVTSLATSA-GQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTAD 70
Query: 280 EPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFR 339
+SAS D ++++W T + R + GH + + + I+S +D+ +
Sbjct: 71 GAYALSASWDKTLRLWDVATGETYQRFV----GHKSDVMSVDIDKKASMIISGSRDKTIK 126
Query: 340 LFSV 343
++++
Sbjct: 127 VWTI 130
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 56.2 bits (134), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 44/199 (22%), Positives = 91/199 (45%), Gaps = 20/199 (10%)
Query: 427 VKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN 486
V+ CT++A G +A+ + + +++ +G + ++ H +V+ V D
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFV--------GHKSDVMSVDIDKKA 119
Query: 487 TLMISAGYHGDIKVWDFKGRDLKS-----RWEVGCSLVKIVYHRVNG----LLATVADDL 537
+++IS IKVW KG+ L + W S V++V + + + +D
Sbjct: 120 SMIISGSRDKTIKVWTIKGQCLATLLGHNDW---VSQVRVVPNEKADDDSVTIISAGNDK 176
Query: 538 VIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHV 597
+++ +++ ++ F GH I S DG + S+G DG + +W++ + + +
Sbjct: 177 MVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA 236
Query: 598 DVSITALSLSPNMDVLATA 616
+ +L+ SPN LA A
Sbjct: 237 QDEVFSLAFSPNRYWLAAA 255
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 73/346 (21%), Positives = 130/346 (37%), Gaps = 60/346 (17%)
Query: 265 EAHDNAIISLHFFANEP-VLMSASADNSIKMWIFDTTD---GDPRLLRFRSGHSAPPLCI 320
E H+ + SL A +P +L+SAS D ++ W D G P +R GHS
Sbjct: 14 EGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVP--VRSFKGHSHIVQDC 71
Query: 321 RFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARXXXXXXXXXXXXPVIAFD 380
A+G + LSA D+ RL+ V + E QR V ++ V++ D
Sbjct: 72 TLTADGAYALSASWDKTLRLWDV----ATGETYQRFVGHKS-------------DVMSVD 114
Query: 381 CAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHI--------LRPCPENPTAVKACTI 432
++ +++ D VW ++ L + +R P + TI
Sbjct: 115 I----DKKASMIISGSRDKT-IKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTI 169
Query: 433 SACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISA 492
+ GN + ++ +NL ++ HN + + TL+ SA
Sbjct: 170 ISAGNDKM-------VKAWNLNQFQIEADFI--------GHNSNINTLTASPDGTLIASA 214
Query: 493 GYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVR- 551
G G+I +W+ + + + + LA A I++F + +V
Sbjct: 215 GKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLA-AATATGIKVFSLDPQYLVDD 273
Query: 552 ---KFEGHT----DRITDFCFSEDGKWLLSSGMDGSLRIWDVILAR 590
+F G++ +S DG+ L + D +R+W V+ A
Sbjct: 274 LRPEFAGYSAAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTAN 319
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 68/149 (45%), Gaps = 11/149 (7%)
Query: 154 VIVGSQEGSLQLWNISTKKKLYEFKGWGXXXXXXXXXPALDVVAVGCSDGKIHVHNVRYD 213
+I + ++ WN++ + +F G P ++A DG+I + N+
Sbjct: 169 IISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAK 228
Query: 214 EELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIR-------EA 266
+ + +T S + V +LAFS + L A+ A+ I +++L+ + L +R A
Sbjct: 229 KAM--YTLSAQDEVFSLAFSPNRYWLAAATATG--IKVFSLDPQYLVDDLRPEFAGYSAA 284
Query: 267 HDNAIISLHFFANEPVLMSASADNSIKMW 295
+ +SL + A+ L + DN I++W
Sbjct: 285 AEPHAVSLAWSADGQTLFAGYTDNVIRVW 313
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 59/125 (47%), Gaps = 10/125 (8%)
Query: 224 RGAVTALAFSSDGQP-LLASGASSGVISIWNL--EKRRLQSVIR--EAHDNAIISLHFFA 278
G VT+LA S+ GQP LL S + + W L + ++ +R + H + + A
Sbjct: 17 NGWVTSLATSA-GQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTA 75
Query: 279 NEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAF 338
+ +SAS D ++++W T + R + GH + + + I+S +D+
Sbjct: 76 DGAYALSASWDKTLRLWDVATGETYQRFV----GHKSDVMSVDIDKKASMIISGSRDKTI 131
Query: 339 RLFSV 343
+++++
Sbjct: 132 KVWTI 136
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 91/460 (19%), Positives = 176/460 (38%), Gaps = 46/460 (10%)
Query: 160 EGSLQLWNISTKKKLYEFKGWGXXXXXXXXXPALDVVAVGCSDGKIHVHNVRYDEELVTF 219
+ +LQ++ T +KL E K +A D K+ + N E + T+
Sbjct: 642 DKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIATCSVDKKVKIWNSMTGELVHTY 701
Query: 220 THSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFAN 279
+S LLA+G+S + +W+L ++ ++ + H N++ F +
Sbjct: 702 DEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQKECRNTMF-GHTNSVNHCRFSPD 760
Query: 280 EPVLMSASADNSIKMWIFDTTDGDPR----LLRFRSGHSAPP-------LCIRFYANGRH 328
+ +L S SAD ++K+W D T + R + +F P C + A+G
Sbjct: 761 DKLLASCSADGTLKLW--DATSANERKSINVKQFFLNLEDPQEDMEVIVKCCSWSADGAR 818
Query: 329 ILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARXXXXXXXXXXXXPVIAFD--CAEIRE 386
I+ A +++ F LF + S L + H + V+A C E+
Sbjct: 819 IMVAAKNKIF-LFDI---HTSGLLGEIHTGHHSTIQYCDFSPQNHLAVVALSQYCVELWN 874
Query: 387 RD-------------WCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTIS 433
D W + V D + + + C + +K
Sbjct: 875 TDSRSKVADCRGHLSWVHGVMFSPDGSSFLTSSDDQTIRLWETKKVCKNSAVMLKQEVDV 934
Query: 434 ACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAG 493
V+ A I R L +G R +D + V C S + I+ G
Sbjct: 935 VFQENEVMVLAVDHIRRLQLING--RTGQIDYLTEAQ-------VSCCCLSPHLQYIAFG 985
Query: 494 -YHGDIKVWDF-KGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVR 551
+G I++ + R +SR++ ++ I + L + +DD I++++ + +
Sbjct: 986 DENGAIEILELVNNRIFQSRFQHKKTVWHIQFTADEKTLISSSDDAEIQVWNWQLDKCIF 1045
Query: 552 KFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQ 591
GH + + DF ++ + LLS DG++++W++I +
Sbjct: 1046 -LRGHQETVKDFRLLKNSR-LLSWSFDGTVKVWNIITGNK 1083
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 60/131 (45%), Gaps = 7/131 (5%)
Query: 472 AHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRW-----EVGCSLVKIVYHRV 526
AH EV+ A + + + + +K+W+ +L + +V C H +
Sbjct: 661 AHEDEVLCCAFSTDDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHL 720
Query: 527 NGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDV 586
LLAT + D ++L+D+ GHT+ + FS D K L S DG+L++WD
Sbjct: 721 --LLATGSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDA 778
Query: 587 ILARQIDAIHV 597
A + +I+V
Sbjct: 779 TSANERKSINV 789
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 74/172 (43%), Gaps = 24/172 (13%)
Query: 467 ERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDL-----KSRWEVGCSLVKI 521
E+ H G V+ T S K+W F DL + R GC V+
Sbjct: 1084 EKDFVCHQGTVLSCDISHDATKFSSTSADKTAKIWSF---DLLLPLHELRGHNGC--VRC 1138
Query: 522 VYHRVNG-LLATVADDLVIRLFDVVALRMVR-----KFEG---HTDRITDFCFSEDGKWL 572
V+ LLAT D+ IR+++V ++ EG H +TD CFS DGK L
Sbjct: 1139 SAFSVDSTLLATGDDNGEIRIWNVSNGELLHLCAPLSEEGAATHGGWVTDLCFSPDGKML 1198
Query: 573 LSSGMDGSLRIWDVILARQIDAIHVD-VSITALSLSPNMDVLATAHVDQNGV 623
+S+G G ++ W+V+ + + ++ + +SP+ T VD G+
Sbjct: 1199 ISAG--GYIKWWNVVTGESSQTFYTNGTNLKKIHVSPDFKTYVT--VDNLGI 1246
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 80/420 (19%), Positives = 143/420 (34%), Gaps = 80/420 (19%)
Query: 205 IHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIR 264
I+ N+ LV H+ AV FS DGQ + + GA + +L +
Sbjct: 604 INKKNITNLSRLVVRPHT--DAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEI-- 659
Query: 265 EAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA 324
+AH++ ++ F ++ + + S D +K+W ++ G+ L+ HS C F
Sbjct: 660 KAHEDEVLCCAFSTDDRFIATCSVDKKVKIW--NSMTGE--LVHTYDEHSEQVNCCHFTN 715
Query: 325 NGRHILSA-GQDRAFRLFSVIQDQQSRELSQRHV-----AKRARXXXXXXXXXXXXPVIA 378
+ H+L A G F + ++ R H + + +
Sbjct: 716 SSHHLLLATGSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKL 775
Query: 379 FDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNF 438
+D ER NV + F L ++ P + VK C+ SA G
Sbjct: 776 WDATSANERKSINV---------------KQFFL--NLEDPQEDMEVIVKCCSWSADGA- 817
Query: 439 AVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDI 498
++ A I F++ H ++G I G+H I
Sbjct: 818 RIMVAAKNKIFLFDI-------------------HTSGLLG---------EIHTGHHSTI 849
Query: 499 KVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTD 558
+ DF + N L + L++ + V GH
Sbjct: 850 QYCDFSPQ--------------------NHLAVVALSQYCVELWNTDSRSKVADCRGHLS 889
Query: 559 RITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHV 618
+ FS DG L+S D ++R+W+ + A+ + + + + VLA H+
Sbjct: 890 WVHGVMFSPDGSSFLTSSDDQTIRLWETKKVCKNSAVMLKQEVDVVFQENEVMVLAVDHI 949
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 54/123 (43%), Gaps = 21/123 (17%)
Query: 556 HTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAI--HVDVSITALSLSPNMDVL 613
HTD + CFSEDG+ + S G D +L+++ ++ I H D + + S + +
Sbjct: 620 HTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHED-EVLCCAFSTDDRFI 678
Query: 614 ATAHVDQNGVYLW-----------------VNRCMFSGDSNIDSYASGKEIVSVKMPSVS 656
AT VD+ V +W VN C F+ S+ A+G +K+ ++
Sbjct: 679 ATCSVDKK-VKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLN 737
Query: 657 SVE 659
E
Sbjct: 738 QKE 740
Score = 30.4 bits (67), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 62/154 (40%), Gaps = 17/154 (11%)
Query: 152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGXXXXXXXXXPALDVVAVGCSDGKIHVHNVR 211
++++ S +G++++WNI T K +F + +D +
Sbjct: 1062 SRLLSWSFDGTVKVWNIITGNKEKDFVCHQGTVLSCDISHDATKFSSTSADKTAKI---- 1117
Query: 212 YDEELVTFTHSMRG---AVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVI----- 263
+ +L+ H +RG V AFS D LLA+G +G I IWN+ L +
Sbjct: 1118 WSFDLLLPLHELRGHNGCVRCSAFSVDS-TLLATGDDNGEIRIWNVSNGELLHLCAPLSE 1176
Query: 264 --REAHDNAIISLHFFANEPVLMSASADNSIKMW 295
H + L F + +L+SA IK W
Sbjct: 1177 EGAATHGGWVTDLCFSPDGKMLISAGG--YIKWW 1208
Score = 29.3 bits (64), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 27/129 (20%), Positives = 51/129 (39%), Gaps = 21/129 (16%)
Query: 530 LATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVI-- 587
+A+ D +++F + + + H D + FS D +++ + +D ++IW+ +
Sbjct: 636 IASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIATCSVDKKVKIWNSMTG 695
Query: 588 -LARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLW-----------------VNR 629
L D V+ + S + +LAT D + LW VN
Sbjct: 696 ELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSD-CFLKLWDLNQKECRNTMFGHTNSVNH 754
Query: 630 CMFSGDSNI 638
C FS D +
Sbjct: 755 CRFSPDDKL 763
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 61/130 (46%), Gaps = 5/130 (3%)
Query: 472 AHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNG--- 528
AH EV+ A S ++ + + +K+WD L ++ V H N
Sbjct: 662 AHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCC-HFTNKSNH 720
Query: 529 -LLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVI 587
LLAT ++D ++L+D+ GHT+ + FS D + L S DG+LR+WDV
Sbjct: 721 LLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVR 780
Query: 588 LARQIDAIHV 597
A + +I+V
Sbjct: 781 SANERKSINV 790
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 83/439 (18%), Positives = 164/439 (37%), Gaps = 56/439 (12%)
Query: 160 EGSLQLWNISTKKKLYEFKGWGXXXXXXXXXPALDVVAVGCSDGKIHVHNVRYDEELVTF 219
+ +LQ++ T +KL + K +A +D K+ + + + + T+
Sbjct: 643 DKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTY 702
Query: 220 THSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFAN 279
+ LLA+G++ + +W+L ++ ++ + H N++ F +
Sbjct: 703 DEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMF-GHTNSVNHCRFSPD 761
Query: 280 EPVLMSASADNSIKMWIFDTTDGDPR----LLRFRSGHSAPP-------LCIRFYANGRH 328
+ +L S SAD ++++W D + R + RF PP C + A+G
Sbjct: 762 DELLASCSADGTLRLW--DVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDK 819
Query: 329 ILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARXXXXXXXXXXXXPVIAFD--CAEIRE 386
I+ A +++ LF + S L++ H + VIA C E+
Sbjct: 820 IIVAAKNKVL-LFDI---HTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVEL-- 873
Query: 387 RDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGG 446
W ++D+ RL+ + C + + V S G+ + +
Sbjct: 874 --W------NIDS------RLK--------VADCRGHLSWVHGVMFSPDGSSFLTASDDQ 911
Query: 447 WIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGR 506
I + + + + E E + +A D+ L + AG G I
Sbjct: 912 TIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQI-------- 963
Query: 507 DLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFS 566
D +V C + V A +D I++ ++ R+ GH + F+
Sbjct: 964 DYLPEAQVSCCCLSPHLEYV----AFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFT 1019
Query: 567 EDGKWLLSSGMDGSLRIWD 585
DGK L+SS D +++W+
Sbjct: 1020 ADGKTLISSSEDSVIQVWN 1038
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 76/173 (43%), Gaps = 25/173 (14%)
Query: 467 ERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKS-----RWEVGCSLVKI 521
ER H G V+ A S T S K+W F DL S + GC V+
Sbjct: 1085 ERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSF---DLLSPLHELKGHNGC--VRC 1139
Query: 522 VYHRVNG-LLATVADDLVIRLFDVVALRMVRKF------EG---HTDRITDFCFSEDGKW 571
++G LLAT D+ IR+++V +++ EG H +TD CFS D K
Sbjct: 1140 SAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKT 1199
Query: 572 LLSSGMDGSLRIWDVILARQIDAIHVD-VSITALSLSPNMDVLATAHVDQNGV 623
L+S+G G L+ W+V + + ++ + +SP+ T VD G+
Sbjct: 1200 LVSAG--GYLKWWNVATGDSSQTFYTNGTNLKKIHVSPDFRTYVT--VDNLGI 1248
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 6/115 (5%)
Query: 226 AVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMS 285
AV FS DGQ + + GA + +L + +AH++ ++ F +++ + +
Sbjct: 624 AVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDI--KAHEDEVLCCAFSSDDSYIAT 681
Query: 286 ASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRL 340
SAD +K+W D+ G +L+ HS C F H+L A F L
Sbjct: 682 CSADKKVKIW--DSATG--KLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFL 732
Score = 37.0 bits (84), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 44/196 (22%), Positives = 75/196 (38%), Gaps = 45/196 (22%)
Query: 191 PALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVIS 250
P L+ VA G DG I + + + + + + AV + F++DG+ L++S S VI
Sbjct: 978 PHLEYVAFGDEDGAIKIIELP-NNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDS-VIQ 1035
Query: 251 IWN---------------------LEKRRLQS----------------VIRE--AHDNAI 271
+WN L+ RL S + R+ H +
Sbjct: 1036 VWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTV 1095
Query: 272 ISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILS 331
+S ++ S SAD + K+W FD L GH+ C F +G + +
Sbjct: 1096 LSCAISSDATKFSSTSADKTAKIWSFDLLSP----LHELKGHNGCVRCSAFSLDGILLAT 1151
Query: 332 AGQDRAFRLFSVIQDQ 347
+ R+++V Q
Sbjct: 1152 GDDNGEIRIWNVSDGQ 1167
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 101/539 (18%), Positives = 197/539 (36%), Gaps = 76/539 (14%)
Query: 156 VGSQEGSLQLWNISTKKKLYEFKGWGXXXXXXXXXPALDVVAVGCSDGKIHVHNVRYDEE 215
GS + L+LW+++ K+ G P +++A +DG + + +VR E
Sbjct: 725 TGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANE 784
Query: 216 LVTFT------------HSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVI 263
+ + V ++S+DG ++ A+ + ++++ L + I
Sbjct: 785 RKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIV--AAKNKVLLFDIHTSGLLAEI 842
Query: 264 REAHDNAIISLHFFANEPVLMSASADNSIKMWIFDT--TDGDPRLLRFRSGHSAPPLCIR 321
H + I F + + + A + +++W D+ D R GH + +
Sbjct: 843 HTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCR------GHLSWVHGVM 896
Query: 322 FYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRH----VAKRARXXXXXXXXXXXXPVI 377
F +G L+A D+ R++ + ++ + + V + +I
Sbjct: 897 FSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLI 956
Query: 378 AFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEH----ILRPCPEN---------P 424
A +I V C + YV G+ + P N
Sbjct: 957 AGKTGQIDYLPEAQVSCCCLSPHLEYV------AFGDEDGAIKIIELPNNRVFSSGVGHK 1010
Query: 425 TAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDS 484
AV+ +A G + + I+ +N Q+G Y+ + + ++
Sbjct: 1011 KAVRHIQFTADGKTLISSSEDSVIQVWNWQTG----DYVFLQAHQETVKDFRLL------ 1060
Query: 485 TNTLMISAGYHGDIKVWD-FKGR-DLKSRWEVGCSLVKIVYHRVNGLLATVADDLV-IRL 541
++ ++S + G +KVW+ GR + G L + +T AD I
Sbjct: 1061 QDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWS 1120
Query: 542 FDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVI---LARQIDAIHVD 598
FD+ L + + +GH + FS DG L + +G +RIW+V L I V+
Sbjct: 1121 FDL--LSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVE 1178
Query: 599 VS-------ITALSLSPNMDVLATAHVDQNGVYLWVNRCMFSGDSNIDSYASGKEIVSV 650
+T + SP+ L +A G W N + +GDS+ Y +G + +
Sbjct: 1179 EGTATHGGWVTDVCFSPDSKTLVSA----GGYLKWWN--VATGDSSQTFYTNGTNLKKI 1231
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 53/123 (43%), Gaps = 21/123 (17%)
Query: 556 HTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAI--HVDVSITALSLSPNMDVL 613
HTD + CFS+DG+ + S G D +L+++ ++ I H D + + S + +
Sbjct: 621 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHED-EVLCCAFSSDDSYI 679
Query: 614 ATAHVDQNGVYLW-----------------VNRCMFSGDSNIDSYASGKEIVSVKMPSVS 656
AT D+ V +W VN C F+ SN A+G +K+ ++
Sbjct: 680 ATCSADKK-VKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLN 738
Query: 657 SVE 659
E
Sbjct: 739 QKE 741
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 62/123 (50%), Gaps = 22/123 (17%)
Query: 227 VTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSA 286
+ ++ FS DG+ LA+GA +I IW++E R++ +I + H+ I SL +F + L+S
Sbjct: 126 IRSVCFSPDGK-FLATGAEDRLIRIWDIENRKI-VMILQGHEQDIYSLDYFPSGDKLVSG 183
Query: 287 SADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIR--------FYANGRHILSAGQDRAF 338
S D ++++W R+G + L I +G++I + DRA
Sbjct: 184 SGDRTVRIW------------DLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAV 231
Query: 339 RLF 341
R++
Sbjct: 232 RVW 234
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 81/196 (41%), Gaps = 16/196 (8%)
Query: 156 VGSQEGSLQLWNISTKKKLYEFKGWGXXXXXXXXXPALDVVAVGCSDGKIHVHNVRYDEE 215
G+++ +++W+I +K + +G P+ D + G D + + ++R +
Sbjct: 140 TGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQ- 198
Query: 216 LVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEK----RRLQSVIRE--AHDN 269
+ T S+ VT +A S +A+G+ + +W+ E RL S H +
Sbjct: 199 -CSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKD 257
Query: 270 AIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRS--------GHSAPPLCIR 321
++ S+ F + ++S S D S+K+W + S GH L +
Sbjct: 258 SVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVA 317
Query: 322 FYANGRHILSAGQDRA 337
N +ILS +DR
Sbjct: 318 TTQNDEYILSGSKDRG 333
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 50/104 (48%)
Query: 529 LLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVIL 588
LAT A+D +IR++D+ ++V +GH I + G L+S D ++RIWD+
Sbjct: 137 FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRT 196
Query: 589 ARQIDAIHVDVSITALSLSPNMDVLATAHVDQNGVYLWVNRCMF 632
+ + ++ +T +++SP A V +W + F
Sbjct: 197 GQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGF 240
Score = 33.1 bits (74), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 19/106 (17%), Positives = 48/106 (45%), Gaps = 8/106 (7%)
Query: 489 MISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNG-LLATVADDLVIRLFDVVAL 547
++S +++WD + + + + +G +A + D +R++D
Sbjct: 180 LVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETG 239
Query: 548 RMVRKFE-------GHTDRITDFCFSEDGKWLLSSGMDGSLRIWDV 586
+V + + GH D + F+ DG+ ++S +D S+++W++
Sbjct: 240 FLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNL 285
Score = 33.1 bits (74), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Query: 560 ITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAI--HVDVSITALSLSPNMDVLATAH 617
I CFS DGK+L + D +RIWD I R+I I + I +L P+ D L +
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIWD-IENRKIVMILQGHEQDIYSLDYFPSGDKLVSGS 184
Query: 618 VDQNGVYLW 626
D+ V +W
Sbjct: 185 GDRT-VRIW 192
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 59/143 (41%), Gaps = 21/143 (14%)
Query: 227 VTALAFSSDGQPLLASG---------ASSGVI-------SIWNLEKRRLQSVIREAHDNA 270
V + FS+DG+ LA+G S G + S N + L + + D
Sbjct: 67 VCCVKFSNDGE-YLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLY 125
Query: 271 IISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHIL 330
I S+ F + L + + D I++W + +++ GH + ++ +G ++
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIWDIENR----KIVMILQGHEQDIYSLDYFPSGDKLV 181
Query: 331 SAGQDRAFRLFSVIQDQQSRELS 353
S DR R++ + Q S LS
Sbjct: 182 SGSGDRTVRIWDLRTGQCSLTLS 204
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 61/130 (46%), Gaps = 5/130 (3%)
Query: 472 AHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNG--- 528
AH EV+ A S ++ + + +K+WD L ++ V H N
Sbjct: 655 AHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCC-HFTNKSNH 713
Query: 529 -LLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVI 587
LLAT ++D ++L+D+ GHT+ + FS D + L S DG+LR+WDV
Sbjct: 714 LLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVR 773
Query: 588 LARQIDAIHV 597
A + +I+V
Sbjct: 774 SANERKSINV 783
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 83/439 (18%), Positives = 164/439 (37%), Gaps = 56/439 (12%)
Query: 160 EGSLQLWNISTKKKLYEFKGWGXXXXXXXXXPALDVVAVGCSDGKIHVHNVRYDEELVTF 219
+ +LQ++ T +KL + K +A +D K+ + + + + T+
Sbjct: 636 DKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTY 695
Query: 220 THSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFAN 279
+ LLA+G++ + +W+L ++ ++ + H N++ F +
Sbjct: 696 DEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMF-GHTNSVNHCRFSPD 754
Query: 280 EPVLMSASADNSIKMWIFDTTDGDPR----LLRFRSGHSAPP-------LCIRFYANGRH 328
+ +L S SAD ++++W D + R + RF PP C + A+G
Sbjct: 755 DELLASCSADGTLRLW--DVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDK 812
Query: 329 ILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARXXXXXXXXXXXXPVIAFD--CAEIRE 386
I+ A +++ LF + S L++ H + VIA C E+
Sbjct: 813 IIVAAKNKVL-LFDI---HTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVEL-- 866
Query: 387 RDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGG 446
W ++D+ RL+ + C + + V S G+ + +
Sbjct: 867 --W------NIDS------RLK--------VADCRGHLSWVHGVMFSPDGSSFLTASDDQ 904
Query: 447 WIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGR 506
I + + + + E E + +A D+ L + AG G I
Sbjct: 905 TIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQI-------- 956
Query: 507 DLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFS 566
D +V C + V A +D I++ ++ R+ GH + F+
Sbjct: 957 DYLPEAQVSCCCLSPHLEYV----AFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFT 1012
Query: 567 EDGKWLLSSGMDGSLRIWD 585
DGK L+SS D +++W+
Sbjct: 1013 ADGKTLISSSEDSVIQVWN 1031
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 76/173 (43%), Gaps = 25/173 (14%)
Query: 467 ERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKS-----RWEVGCSLVKI 521
ER H G V+ A S T S K+W F DL S + GC V+
Sbjct: 1078 ERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSF---DLLSPLHELKGHNGC--VRC 1132
Query: 522 VYHRVNG-LLATVADDLVIRLFDVVALRMVRKF------EG---HTDRITDFCFSEDGKW 571
++G LLAT D+ IR+++V +++ EG H +TD CFS D K
Sbjct: 1133 SAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKT 1192
Query: 572 LLSSGMDGSLRIWDVILARQIDAIHVD-VSITALSLSPNMDVLATAHVDQNGV 623
L+S+G G L+ W+V + + ++ + +SP+ T VD G+
Sbjct: 1193 LVSAG--GYLKWWNVATGDSSQTFYTNGTNLKKIHVSPDFRTYVT--VDNLGI 1241
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 6/115 (5%)
Query: 226 AVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMS 285
AV FS DGQ + + GA + +L + +AH++ ++ F +++ + +
Sbjct: 617 AVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDI--KAHEDEVLCCAFSSDDSYIAT 674
Query: 286 ASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRL 340
SAD +K+W D+ G +L+ HS C F H+L A F L
Sbjct: 675 CSADKKVKIW--DSATG--KLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFL 725
Score = 37.0 bits (84), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 44/196 (22%), Positives = 75/196 (38%), Gaps = 45/196 (22%)
Query: 191 PALDVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVIS 250
P L+ VA G DG I + + + + + + AV + F++DG+ L++S S VI
Sbjct: 971 PHLEYVAFGDEDGAIKIIELP-NNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDS-VIQ 1028
Query: 251 IWN---------------------LEKRRLQS----------------VIRE--AHDNAI 271
+WN L+ RL S + R+ H +
Sbjct: 1029 VWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTV 1088
Query: 272 ISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILS 331
+S ++ S SAD + K+W FD L GH+ C F +G + +
Sbjct: 1089 LSCAISSDATKFSSTSADKTAKIWSFDLLSP----LHELKGHNGCVRCSAFSLDGILLAT 1144
Query: 332 AGQDRAFRLFSVIQDQ 347
+ R+++V Q
Sbjct: 1145 GDDNGEIRIWNVSDGQ 1160
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 103/540 (19%), Positives = 199/540 (36%), Gaps = 78/540 (14%)
Query: 156 VGSQEGSLQLWNISTKKKLYEFKGWGXXXXXXXXXPALDVVAVGCSDGKIHVHNVRYDEE 215
GS + L+LW+++ K+ G P +++A +DG + + +VR E
Sbjct: 718 TGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANE 777
Query: 216 LVTFT------------HSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVI 263
+ + V ++S+DG ++ A+ + ++++ L + I
Sbjct: 778 RKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIV--AAKNKVLLFDIHTSGLLAEI 835
Query: 264 REAHDNAIISLHFFANEPVLMSASADNSIKMWIFDT--TDGDPRLLRFRSGHSAPPLCIR 321
H + I F + + + A + +++W D+ D R GH + +
Sbjct: 836 HTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCR------GHLSWVHGVM 889
Query: 322 FYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRH----VAKRARXXXXXXXXXXXXPVI 377
F +G L+A D+ R++ + ++ + + V + +I
Sbjct: 890 FSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLI 949
Query: 378 AFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEH----ILRPCPEN---------P 424
A +I V C + YV G+ + P N
Sbjct: 950 AGKTGQIDYLPEAQVSCCCLSPHLEYV------AFGDEDGAIKIIELPNNRVFSSGVGHK 1003
Query: 425 TAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDS 484
AV+ +A G + + I+ +N Q+G Y+ + + ++
Sbjct: 1004 KAVRHIQFTADGKTLISSSEDSVIQVWNWQTG----DYVFLQAHQETVKDFRLL------ 1053
Query: 485 TNTLMISAGYHGDIKVWD-FKGR-DLKSRWEVGCSLVKIVYHRVNGLLATVADDLV-IRL 541
++ ++S + G +KVW+ GR + G L + +T AD I
Sbjct: 1054 QDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWS 1113
Query: 542 FDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVI---LARQIDAIHVD 598
FD+ L + + +GH + FS DG L + +G +RIW+V L I V+
Sbjct: 1114 FDL--LSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVE 1171
Query: 599 VS-------ITALSLSPNMDVLATAHVDQNGVYL-WVNRCMFSGDSNIDSYASGKEIVSV 650
+T + SP+ L +A G YL W N + +GDS+ Y +G + +
Sbjct: 1172 EGTATHGGWVTDVCFSPDSKTLVSA-----GGYLKWWN--VATGDSSQTFYTNGTNLKKI 1224
Score = 34.7 bits (78), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 53/123 (43%), Gaps = 21/123 (17%)
Query: 556 HTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAI--HVDVSITALSLSPNMDVL 613
HTD + CFS+DG+ + S G D +L+++ ++ I H D + + S + +
Sbjct: 614 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHED-EVLCCAFSSDDSYI 672
Query: 614 ATAHVDQNGVYLW-----------------VNRCMFSGDSNIDSYASGKEIVSVKMPSVS 656
AT D+ V +W VN C F+ SN A+G +K+ ++
Sbjct: 673 ATCSADKK-VKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLN 731
Query: 657 SVE 659
E
Sbjct: 732 QKE 734
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 44/199 (22%), Positives = 87/199 (43%), Gaps = 20/199 (10%)
Query: 427 VKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTN 486
V+ CT++A G +A+ + + +++ +G + ++ H +V V D
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFV--------GHKSDVXSVDIDKKA 119
Query: 487 TLMISAGYHGDIKVWDFKGRDLKS-----RWEVGCSLVKIVYHRVNG----LLATVADDL 537
+ +IS IKVW KG+ L + W S V++V + + + +D
Sbjct: 120 SXIISGSRDKTIKVWTIKGQCLATLLGHNDW---VSQVRVVPNEKADDDSVTIISAGNDK 176
Query: 538 VIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHV 597
++ +++ ++ F GH I S DG + S+G DG + +W++ + +
Sbjct: 177 XVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLSA 236
Query: 598 DVSITALSLSPNMDVLATA 616
+ +L+ SPN LA A
Sbjct: 237 QDEVFSLAFSPNRYWLAAA 255
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 73/345 (21%), Positives = 127/345 (36%), Gaps = 60/345 (17%)
Query: 265 EAHDNAIISLHFFANEP-VLMSASADNSIKMWIFDTTD---GDPRLLRFRSGHSAPPLCI 320
E H+ + SL A +P +L+SAS D ++ W D G P +R GHS
Sbjct: 14 EGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVP--VRSFKGHSHIVQDC 71
Query: 321 RFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARXXXXXXXXXXXXPVIAFD 380
A+G + LSA D+ RL+ V + E QR V ++ V + D
Sbjct: 72 TLTADGAYALSASWDKTLRLWDV----ATGETYQRFVGHKS-------------DVXSVD 114
Query: 381 CAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHI--------LRPCPENPTAVKACTI 432
++ +++ D VW ++ L + +R P + TI
Sbjct: 115 I----DKKASXIISGSRDKT-IKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTI 169
Query: 433 SACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISA 492
+ GN ++ +NL ++ HN + + TL+ SA
Sbjct: 170 ISAGNDKX-------VKAWNLNQFQIEADFI--------GHNSNINTLTASPDGTLIASA 214
Query: 493 GYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVR- 551
G G+I +W+ + + + + LA A I++F + +V
Sbjct: 215 GKDGEIXLWNLAAKKAXYTLSAQDEVFSLAFSPNRYWLA-AATATGIKVFSLDPQYLVDD 273
Query: 552 ---KFEGHTD----RITDFCFSEDGKWLLSSGMDGSLRIWDVILA 589
+F G++ +S DG+ L + D +R+W V A
Sbjct: 274 LRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVXTA 318
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 70/155 (45%), Gaps = 11/155 (7%)
Query: 154 VIVGSQEGSLQLWNISTKKKLYEFKGWGXXXXXXXXXPALDVVAVGCSDGKIHVHNVRYD 213
+I + ++ WN++ + +F G P ++A DG+I + N+
Sbjct: 169 IISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAK 228
Query: 214 EELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIR-------EA 266
+ +T S + V +LAFS + L A+ A+ I +++L+ + L +R +A
Sbjct: 229 K--AXYTLSAQDEVFSLAFSPNRYWLAAATATG--IKVFSLDPQYLVDDLRPEFAGYSKA 284
Query: 267 HDNAIISLHFFANEPVLMSASADNSIKMWIFDTTD 301
+ +SL + A+ L + DN I++W T +
Sbjct: 285 AEPHAVSLAWSADGQTLFAGYTDNVIRVWQVXTAN 319
Score = 33.5 bits (75), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 58/124 (46%), Gaps = 10/124 (8%)
Query: 225 GAVTALAFSSDGQP-LLASGASSGVISIWNL--EKRRLQSVIR--EAHDNAIISLHFFAN 279
G VT+LA S+ GQP LL S + + W L + ++ +R + H + + A+
Sbjct: 18 GWVTSLATSA-GQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTAD 76
Query: 280 EPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFR 339
+SAS D ++++W T + R + GH + + I+S +D+ +
Sbjct: 77 GAYALSASWDKTLRLWDVATGETYQRFV----GHKSDVXSVDIDKKASXIISGSRDKTIK 132
Query: 340 LFSV 343
++++
Sbjct: 133 VWTI 136
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 50/100 (50%), Gaps = 11/100 (11%)
Query: 227 VTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFA-NEPVLMS 285
V L+F+ + +LA+G++ +++W+L +L+ E+H + I +H+ NE +L S
Sbjct: 278 VNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILAS 337
Query: 286 ASADNSIKMWIF----------DTTDGDPRLLRFRSGHSA 315
+ D + +W D DG P LL GH+A
Sbjct: 338 SGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTA 377
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 529 LLATVADDLVIRLFDVVALRM-VRKFEGHTDRITDFCFSEDGKWLL-SSGMDGSLRIWDV 586
+LAT + D + L+D+ L++ + FE H D I +S + +L SSG D L +WD+
Sbjct: 290 ILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDL 349
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 54/116 (46%), Gaps = 16/116 (13%)
Query: 195 VVAVGCSDGKIHVHNVRYDE-ELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWN 253
++A G +D + + ++R + +L TF S + + + +S + +LAS + +++W+
Sbjct: 290 ILATGSADKTVALWDLRNLKLKLHTFE-SHKDEIFQVHWSPHNETILASSGTDRRLNVWD 348
Query: 254 LEKRRLQSVIREAHDNA-------------IISLHFFANEP-VLMSASADNSIKMW 295
L K + +A D I + NEP V+ S S DN +++W
Sbjct: 349 LSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIW 404
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 50/100 (50%), Gaps = 11/100 (11%)
Query: 227 VTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFA-NEPVLMS 285
V L+F+ + +LA+G++ +++W+L +L+ E+H + I +H+ NE +L S
Sbjct: 278 VNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILAS 337
Query: 286 ASADNSIKMWIF----------DTTDGDPRLLRFRSGHSA 315
+ D + +W D DG P LL GH+A
Sbjct: 338 SGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTA 377
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 529 LLATVADDLVIRLFDVVALRM-VRKFEGHTDRITDFCFSEDGKWLL-SSGMDGSLRIWDV 586
+LAT + D + L+D+ L++ + FE H D I +S + +L SSG D L +WD+
Sbjct: 290 ILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDL 349
Score = 30.0 bits (66), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 53/116 (45%), Gaps = 16/116 (13%)
Query: 195 VVAVGCSDGKIHVHNVRYDE-ELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWN 253
++A G +D + + ++R + +L TF S + + + +S + +LAS + +++W+
Sbjct: 290 ILATGSADKTVALWDLRNLKLKLHTFE-SHKDEIFQVHWSPHNETILASSGTDRRLNVWD 348
Query: 254 LEKRRLQSVIREAHDNA-------------IISLHFFANEP-VLMSASADNSIKMW 295
L K + +A D I + NEP V+ S S DN ++W
Sbjct: 349 LSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIXQIW 404
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/208 (20%), Positives = 81/208 (38%), Gaps = 14/208 (6%)
Query: 152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGXXXXXXXXXPALDVVAVGCSDGKIHVHNVR 211
N ++ SQ+G L +WN T +K + K P VA G D + N+
Sbjct: 79 NWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLS 138
Query: 212 YDEE------LVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIR- 264
+ + +G ++ + D + L +G+ +W++ + S+
Sbjct: 139 SQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGS 198
Query: 265 ---EAHDNAIISLHFFA-NEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCI 320
H ++SL + N + +S S D ++++W T R +R GH +
Sbjct: 199 EFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRIT---SRAVRTYHGHEGDINSV 255
Query: 321 RFYANGRHILSAGQDRAFRLFSVIQDQQ 348
+F+ +G+ + D RLF + Q
Sbjct: 256 KFFPDGQRFGTGSDDGTCRLFDMRTGHQ 283
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 70/156 (44%), Gaps = 11/156 (7%)
Query: 152 NKVIVGSQEGSLQLWNIS-TKKKLYEFKGWGXXXXXXXXXPALDVVAVGCSDGKIHVHNV 210
N I GS + +++LW++ T + + + G P G DG + ++
Sbjct: 219 NMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDM 278
Query: 211 RYDEELVTFTH------SMRGAVTALAFSSDGQPLLASGASSGVISIWN--LEKRRLQ-S 261
R +L + + VT++AFS G+ LL +G S+G +W+ L + L
Sbjct: 279 RTGHQLQVYNREPDRNDNELPIVTSVAFSISGR-LLFAGYSNGDCYVWDTLLAEMVLNLG 337
Query: 262 VIREAHDNAIISLHFFANEPVLMSASADNSIKMWIF 297
++ +H+ I L ++ L + S D ++K+W F
Sbjct: 338 TLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAF 373
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 17/79 (21%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 542 FDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS- 600
F+ L R +GH+ ++ ++ + W++S+ DG L +W+ + +++ AI +
Sbjct: 51 FNPTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPW 110
Query: 601 ITALSLSPNMDVLATAHVD 619
+ + +PN +A +D
Sbjct: 111 VMECAFAPNGQSVACGGLD 129
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 47/246 (19%), Positives = 97/246 (39%), Gaps = 28/246 (11%)
Query: 110 DIDGNMFIWAFKGIEENLAPVGHVKLDDK-FTPTCIMHPDTYLNKVIVGSQEGSLQLWNI 168
D DGNM PV V K + +C PD ++I GS + + LW++
Sbjct: 142 DRDGNM-------------PVSRVLTGHKGYASSCQYVPDQE-TRLITGSGDQTCVLWDV 187
Query: 169 STKKKL----YEFKGWGXXXXXXXXXPAL--DVVAVGCSDGKIHVHNVRYDEELVTFTHS 222
+T +++ EF +L ++ G D + + ++R V H
Sbjct: 188 TTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHG 247
Query: 223 MRGAVTALAFSSDGQPLLASGASSGVISIWNLEK-RRLQSVIREAHDN-----AIISLHF 276
G + ++ F DGQ +G+ G ++++ +LQ RE N + S+ F
Sbjct: 248 HEGDINSVKFFPDGQR-FGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAF 306
Query: 277 FANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDR 336
+ +L + ++ +W + L ++ H C+ ++G + + D+
Sbjct: 307 SISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDK 366
Query: 337 AFRLFS 342
++++
Sbjct: 367 NLKIWA 372
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 536 DLVIRLFDV-VALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQI 592
D +RL+D+ + R VR + GH I F DG+ + DG+ R++D+ Q+
Sbjct: 227 DTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQL 284
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 70/163 (42%), Gaps = 23/163 (14%)
Query: 472 AHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKG--------RDLKSRWEVGCSLVKIVY 523
H EV VA N ++SAG +IK+W+ G ++ S W V C +
Sbjct: 116 GHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDW-VSCVRYSPIM 174
Query: 524 HRVNGL------LATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGM 577
N + A+V D +++++ ++ F+ H + S +GK++ + G
Sbjct: 175 KSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIATGGK 233
Query: 578 DGSLRIWDVI----LARQIDAIHVDVSITALSLSPNMDVLATA 616
D L IWD++ R+ DA +I ++ +P + +A
Sbjct: 234 DKKLLIWDILNLTYPQREFDA---GSTINQIAFNPKLQWVAVG 273
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 53/119 (44%), Gaps = 10/119 (8%)
Query: 234 SDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPV------LMSAS 287
++ P+L SG+ + IW L + H HF ++ + +S+S
Sbjct: 36 NEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSS 95
Query: 288 ADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQD 346
D ++++W T R + GH + + F + R ILSAG +R +L++++ +
Sbjct: 96 WDKTLRLWDLRTGTTYKRFV----GHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGE 150
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 36/177 (20%), Positives = 74/177 (41%), Gaps = 17/177 (9%)
Query: 459 RGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVG--C 516
+ Y + ++ HN V +A N IS+ + +++WD + R+ VG
Sbjct: 61 QNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRF-VGHQS 119
Query: 517 SLVKIVYHRVNGLLATVADDLVIRLFDVVA---LRMVRKFEGHTDRITDFCFSEDGK--- 570
+ + + N + + + I+L++++ K E H+D ++ +S K
Sbjct: 120 EVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEK-ENHSDWVSCVRYSPIMKSAN 178
Query: 571 -------WLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSLSPNMDVLATAHVDQ 620
+ S G DG L++W+ + + ++ LS+SPN +AT D+
Sbjct: 179 KVQPFAPYFASVGWDGRLKVWNTNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDK 235
Score = 33.9 bits (76), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 28/129 (21%), Positives = 60/129 (46%), Gaps = 17/129 (13%)
Query: 227 VTALAFSSDGQPLLASGASSGVISIWN-LEKRRLQSVIREAHDNAIISLHF-----FANE 280
V ++AFS D + +L++GA I +WN L + + S +E H + + + + AN+
Sbjct: 121 VYSVAFSPDNRQILSAGAER-EIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANK 179
Query: 281 -----PVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQD 335
P S D +K+W + + ++ H + + NG++I + G+D
Sbjct: 180 VQPFAPYFASVGWDGRLKVW-----NTNFQIRYTFKAHESNVNHLSISPNGKYIATGGKD 234
Query: 336 RAFRLFSVI 344
+ ++ ++
Sbjct: 235 KKLLIWDIL 243
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/86 (22%), Positives = 41/86 (47%), Gaps = 4/86 (4%)
Query: 551 RKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDA-IHVDVSITALSLSPN 609
+ GH ++D S++ + +SS D +LR+WD+ + + +++ SP+
Sbjct: 70 KALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPD 129
Query: 610 MDVLATAHVDQNGVYLW--VNRCMFS 633
+ +A ++ + LW + C FS
Sbjct: 130 NRQILSAGAERE-IKLWNILGECKFS 154
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 49/100 (49%), Gaps = 11/100 (11%)
Query: 227 VTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFA-NEPVLMS 285
V L+F+ + +LA+G++ +++W+L +L+ E+H + I + + NE +L S
Sbjct: 280 VNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILAS 339
Query: 286 ASADNSIKMWIF----------DTTDGDPRLLRFRSGHSA 315
+ D + +W D DG P LL GH+A
Sbjct: 340 SGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTA 379
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 529 LLATVADDLVIRLFDVVALRM-VRKFEGHTDRITDFCFSEDGKWLL-SSGMDGSLRIWDV 586
+LAT + D + L+D+ L++ + FE H D I +S + +L SSG D L +WD+
Sbjct: 292 ILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 351
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 78/210 (37%), Gaps = 30/210 (14%)
Query: 436 GNFAVLGTAGGWIE---RFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISA 492
G F G+ G IE + N + ++R Y+ N V+ S++ L+
Sbjct: 107 GEFGGFGSVCGKIEIEIKINHEGEVNRARYM--------PQNACVIATKTPSSDVLVFDY 158
Query: 493 GYHGDIKVWDFKGR---DLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRM 549
H + G DL+ R +NG L + +DD I L+D+ A
Sbjct: 159 TKHPSKP--EPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPK 216
Query: 550 VRK-------FEGHTDRITDFCFSEDGKWLLSS-GMDGSLRIWDVILARQIDAIH-VD-- 598
+ F GHT + D + + L S D L IWD H VD
Sbjct: 217 EHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAH 276
Query: 599 -VSITALSLSPNMD-VLATAHVDQNGVYLW 626
+ LS +P + +LAT D+ V LW
Sbjct: 277 TAEVNCLSFNPYSEFILATGSADKT-VALW 305
Score = 30.0 bits (66), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 23/115 (20%), Positives = 50/115 (43%), Gaps = 14/115 (12%)
Query: 195 VVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNL 254
++A G +D + + ++R + + S + + + +S + +LAS + + +W+L
Sbjct: 292 ILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 351
Query: 255 EKRRLQSVIREAHDNA-------------IISLHFFANEP-VLMSASADNSIKMW 295
K + +A D I + NEP ++ S S DN +++W
Sbjct: 352 SKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVW 406
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 49/100 (49%), Gaps = 11/100 (11%)
Query: 227 VTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFA-NEPVLMS 285
V L+F+ + +LA+G++ +++W+L +L+ E+H + I + + NE +L S
Sbjct: 282 VNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILAS 341
Query: 286 ASADNSIKMWIF----------DTTDGDPRLLRFRSGHSA 315
+ D + +W D DG P LL GH+A
Sbjct: 342 SGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTA 381
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 529 LLATVADDLVIRLFDVVALRM-VRKFEGHTDRITDFCFSEDGKWLL-SSGMDGSLRIWDV 586
+LAT + D + L+D+ L++ + FE H D I +S + +L SSG D L +WD+
Sbjct: 294 ILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 353
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 78/210 (37%), Gaps = 30/210 (14%)
Query: 436 GNFAVLGTAGGWIE---RFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISA 492
G F G+ G IE + N + ++R Y+ N V+ S++ L+
Sbjct: 109 GEFGGFGSVCGKIEIEIKINHEGEVNRARYM--------PQNACVIATKTPSSDVLVFDY 160
Query: 493 GYHGDIKVWDFKGR---DLKSRWEVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRM 549
H + G DL+ R +NG L + +DD I L+D+ A
Sbjct: 161 TKHPSKP--EPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPK 218
Query: 550 VRK-------FEGHTDRITDFCFSEDGKWLLSS-GMDGSLRIWDVILARQIDAIH-VD-- 598
+ F GHT + D + + L S D L IWD H VD
Sbjct: 219 EHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAH 278
Query: 599 -VSITALSLSPNMD-VLATAHVDQNGVYLW 626
+ LS +P + +LAT D+ V LW
Sbjct: 279 TAEVNCLSFNPYSEFILATGSADKT-VALW 307
Score = 30.0 bits (66), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 23/115 (20%), Positives = 50/115 (43%), Gaps = 14/115 (12%)
Query: 195 VVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNL 254
++A G +D + + ++R + + S + + + +S + +LAS + + +W+L
Sbjct: 294 ILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 353
Query: 255 EKRRLQSVIREAHDNA-------------IISLHFFANEP-VLMSASADNSIKMW 295
K + +A D I + NEP ++ S S DN +++W
Sbjct: 354 SKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVW 408
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 49/100 (49%), Gaps = 11/100 (11%)
Query: 227 VTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFA-NEPVLMS 285
V L+F+ + +LA+G++ +++W+L +L+ E+H + I + + NE +L S
Sbjct: 284 VNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILAS 343
Query: 286 ASADNSIKMWIF----------DTTDGDPRLLRFRSGHSA 315
+ D + +W D DG P LL GH+A
Sbjct: 344 SGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTA 383
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 529 LLATVADDLVIRLFDVVALRM-VRKFEGHTDRITDFCFSEDGKWLL-SSGMDGSLRIWDV 586
+LAT + D + L+D+ L++ + FE H D I +S + +L SSG D L +WD+
Sbjct: 296 ILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 355
Score = 30.4 bits (67), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 48/115 (41%), Gaps = 14/115 (12%)
Query: 525 RVNGLLATVADDLVIRLFDVVALRMVRK-------FEGHTDRITDFCFSEDGKWLLSS-G 576
+NG L + +DD I L+D+ A + F GHT + D + + L S
Sbjct: 196 NLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVA 255
Query: 577 MDGSLRIWDVILARQIDAIH-VD---VSITALSLSPNMD-VLATAHVDQNGVYLW 626
D L IWD H VD + LS +P + +LAT D+ V LW
Sbjct: 256 DDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKT-VALW 309
Score = 30.0 bits (66), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 23/115 (20%), Positives = 50/115 (43%), Gaps = 14/115 (12%)
Query: 195 VVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNL 254
++A G +D + + ++R + + S + + + +S + +LAS + + +W+L
Sbjct: 296 ILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 355
Query: 255 EKRRLQSVIREAHDNA-------------IISLHFFANEP-VLMSASADNSIKMW 295
K + +A D I + NEP ++ S S DN +++W
Sbjct: 356 SKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVW 410
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 49/100 (49%), Gaps = 11/100 (11%)
Query: 227 VTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFA-NEPVLMS 285
V L+F+ + +LA+G++ +++W+L +L+ E+H + I + + NE +L S
Sbjct: 276 VNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILAS 335
Query: 286 ASADNSIKMWIF----------DTTDGDPRLLRFRSGHSA 315
+ D + +W D DG P LL GH+A
Sbjct: 336 SGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTA 375
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 529 LLATVADDLVIRLFDVVALRM-VRKFEGHTDRITDFCFSEDGKWLL-SSGMDGSLRIWDV 586
+LAT + D + L+D+ L++ + FE H D I +S + +L SSG D L +WD+
Sbjct: 288 ILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDL 347
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 24/115 (20%), Positives = 51/115 (44%), Gaps = 14/115 (12%)
Query: 195 VVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNL 254
++A G +D + + ++R + + S + + + +S + +LAS + +++W+L
Sbjct: 288 ILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDL 347
Query: 255 EKRRLQSVIREAHDNA-------------IISLHFFANEP-VLMSASADNSIKMW 295
K + +A D I + NEP V+ S S DN +++W
Sbjct: 348 SKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVW 402
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 48/99 (48%), Gaps = 7/99 (7%)
Query: 243 GASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDG 302
G + G I + + LQ I +AH + I L FF + L+S+S D +K+W DG
Sbjct: 112 GTTEGDIKVLD-SNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIW--SVKDG 168
Query: 303 -DPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRL 340
+PR L GH A I GR++LSA D RL
Sbjct: 169 SNPRTL---IGHRATVTDIAIIDRGRNVLSASLDGTIRL 204
Score = 37.0 bits (84), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 55/237 (23%), Positives = 92/237 (38%), Gaps = 32/237 (13%)
Query: 80 VKRAHQVATWSRHSAKVNLLLLF--GEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDD 137
VK T H A V + + G ++LS +DG + +W E H +
Sbjct: 165 VKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLW-----ECGTGTTIHT-FNR 218
Query: 138 KFTPTCIMHPDTYLNKVIVGSQEGSLQLWNIST-KKKLYEFKGWGXXXXXXXXXPALDVV 196
K P H + VG+ QL IST KK EF +G V
Sbjct: 219 KENP----HDGVNSIALFVGTDR---QLHEISTSKKNNLEFGTYGK------------YV 259
Query: 197 AVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEK 256
G G I VHNV E+ + + +L + + +G +G+++ W+L
Sbjct: 260 IAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDL-- 317
Query: 257 RRLQSVIRE--AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRS 311
R + + E ++ I+ +FA + +S+ D SIK+ I + + + F +
Sbjct: 318 RSPECPVGEFLINEGTPINNVYFAAGALFVSSGFDTSIKLDIISDPESERPAIEFET 374
Score = 36.6 bits (83), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 46/95 (48%), Gaps = 7/95 (7%)
Query: 495 HGDIKVWDFKGRDLKSRWEVG----CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMV 550
GDIKV D + + E+ + K+ + L + + D+ ++++ V
Sbjct: 115 EGDIKVLD---SNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNP 171
Query: 551 RKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWD 585
R GH +TD + G+ +LS+ +DG++R+W+
Sbjct: 172 RTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWE 206
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 48/99 (48%), Gaps = 7/99 (7%)
Query: 243 GASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDG 302
G + G I + + LQ I +AH + I L FF + L+S+S D +K+W DG
Sbjct: 115 GTTEGDIKVLD-SNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIW--SVKDG 171
Query: 303 -DPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRL 340
+PR L GH A I GR++LSA D RL
Sbjct: 172 SNPRTL---IGHRATVTDIAIIDRGRNVLSASLDGTIRL 207
Score = 37.0 bits (84), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 55/237 (23%), Positives = 92/237 (38%), Gaps = 32/237 (13%)
Query: 80 VKRAHQVATWSRHSAKVNLLLLF--GEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDD 137
VK T H A V + + G ++LS +DG + +W E H +
Sbjct: 168 VKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLW-----ECGTGTTIHT-FNR 221
Query: 138 KFTPTCIMHPDTYLNKVIVGSQEGSLQLWNIST-KKKLYEFKGWGXXXXXXXXXPALDVV 196
K P H + VG+ QL IST KK EF +G V
Sbjct: 222 KENP----HDGVNSIALFVGTDR---QLHEISTSKKNNLEFGTYGK------------YV 262
Query: 197 AVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEK 256
G G I VHNV E+ + + +L + + +G +G+++ W+L
Sbjct: 263 IAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDL-- 320
Query: 257 RRLQSVIRE--AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRS 311
R + + E ++ I+ +FA + +S+ D SIK+ I + + + F +
Sbjct: 321 RSPECPVGEFLINEGTPINNVYFAAGALFVSSGFDTSIKLDIISDPESERPAIEFET 377
Score = 36.6 bits (83), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 46/94 (48%), Gaps = 7/94 (7%)
Query: 496 GDIKVWDFKGRDLKSRWEVG----CSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVR 551
GDIKV D + + E+ + K+ + L + + D+ ++++ V R
Sbjct: 119 GDIKVLD---SNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPR 175
Query: 552 KFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWD 585
GH +TD + G+ +LS+ +DG++R+W+
Sbjct: 176 TLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWE 209
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 55/113 (48%), Gaps = 5/113 (4%)
Query: 233 SSDGQPLLASGASSGVISIWN-LEKRRLQSVIREAHDNAIISLHFFANEP-VLMSASADN 290
S+ PLLA S G+I I N + + ++ + H NAI L F +P +L+S S D+
Sbjct: 81 SNTSHPLLAVAGSRGIIRIINPITMQCIKHYV--GHGNAINELKFHPRDPNLLLSVSKDH 138
Query: 291 SIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSV 343
++++W TD + GH L + G I+S G D + +L+ +
Sbjct: 139 ALRLWNI-QTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRI 190
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 48/85 (56%), Gaps = 4/85 (4%)
Query: 515 GCSLVKIVYH-RVNGLLATVADDLVIRLFDVVALRMVRKF---EGHTDRITDFCFSEDGK 570
G ++ ++ +H R LL +V+ D +RL+++ +V F EGH D + + G+
Sbjct: 115 GNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGE 174
Query: 571 WLLSSGMDGSLRIWDVILARQIDAI 595
++S GMD SL++W + R ++AI
Sbjct: 175 KIMSCGMDHSLKLWRINSKRMMNAI 199
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Query: 225 GAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIR--EAHDNAIISLHFFANEPV 282
A+ L F LL S + + +WN++ L ++ E H + ++S +
Sbjct: 116 NAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEK 175
Query: 283 LMSASADNSIKMW 295
+MS D+S+K+W
Sbjct: 176 IMSCGMDHSLKLW 188
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 66/153 (43%), Gaps = 8/153 (5%)
Query: 438 FAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGD 497
FA G G I +N G G + D S + N AH+G V G+ T + SA
Sbjct: 205 FASTG-GDGTIVLYNGVDGTKTGVFEDDSLK-NVAHSGSVFGLTWSPDGTKIASASADKT 262
Query: 498 IKVWDFKGRDLKSRWEVGCSL----VKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKF 553
IK+W+ ++ VG + + I++ + L +++ + I + + +
Sbjct: 263 IKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQ--ALVSISANGFINFVNPELGSIDQVR 320
Query: 554 EGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDV 586
GH IT S DGK L S+ +G + WD+
Sbjct: 321 YGHNKAITALSSSADGKTLFSADAEGHINSWDI 353
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 70/153 (45%), Gaps = 11/153 (7%)
Query: 196 VAVGCSDGKIHVHNVRYD--EELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIW- 252
VAVG D K+HV+ + E+ T H +T++AFS++G L+A+ S VI
Sbjct: 463 VAVGGQDSKVHVYKLSGASVSEVKTIVHPAE--ITSVAFSNNGAFLVATDQSRKVIPYSV 520
Query: 253 --NLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFR 310
N E S H + + + + L + S DNS+ +W + P ++ +
Sbjct: 521 ANNFELAHTNS--WTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIII--K 576
Query: 311 SGHSAPPLCIRFYANGRHILSAGQDRAFRLFSV 343
H+ + + N I+SAGQD + ++V
Sbjct: 577 GAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV 609
Score = 33.9 bits (76), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 21/101 (20%), Positives = 45/101 (44%), Gaps = 9/101 (8%)
Query: 534 ADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQID 593
+DD + +F+ + F HT + ++ DG S+G DG++ +++ + +
Sbjct: 167 SDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTG 226
Query: 594 AIHVDV--------SITALSLSPNMDVLATAHVDQNGVYLW 626
D S+ L+ SP+ +A+A D+ + +W
Sbjct: 227 VFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKT-IKIW 266
Score = 33.5 bits (75), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 20/90 (22%)
Query: 215 ELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWN---------LEKRRLQSVIRE 265
E F HS+R ++ DG L AS G I ++N E L++V
Sbjct: 188 EHTKFVHSVR-------YNPDGS-LFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNV--- 236
Query: 266 AHDNAIISLHFFANEPVLMSASADNSIKMW 295
AH ++ L + + + SASAD +IK+W
Sbjct: 237 AHSGSVFGLTWSPDGTKIASASADKTIKIW 266
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 55/113 (48%), Gaps = 5/113 (4%)
Query: 233 SSDGQPLLASGASSGVISIWN-LEKRRLQSVIREAHDNAIISLHFFANEP-VLMSASADN 290
S+ PLLA S G+I I N + + ++ + H NAI L F +P +L+S S D+
Sbjct: 80 SNTSHPLLAVAGSRGIIRIINPITMQCIKHYV--GHGNAINELKFHPRDPNLLLSVSKDH 137
Query: 291 SIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSV 343
++++W TD + GH L + G I+S G D + +L+ +
Sbjct: 138 ALRLWNI-QTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRI 189
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 48/85 (56%), Gaps = 4/85 (4%)
Query: 515 GCSLVKIVYH-RVNGLLATVADDLVIRLFDVVALRMVRKF---EGHTDRITDFCFSEDGK 570
G ++ ++ +H R LL +V+ D +RL+++ +V F EGH D + + G+
Sbjct: 114 GNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGE 173
Query: 571 WLLSSGMDGSLRIWDVILARQIDAI 595
++S GMD SL++W + R ++AI
Sbjct: 174 KIMSCGMDHSLKLWRINSKRMMNAI 198
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Query: 225 GAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIR--EAHDNAIISLHFFANEPV 282
A+ L F LL S + + +WN++ L ++ E H + ++S +
Sbjct: 115 NAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEK 174
Query: 283 LMSASADNSIKMW 295
+MS D+S+K+W
Sbjct: 175 IMSCGMDHSLKLW 187
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 39/72 (54%)
Query: 515 GCSLVKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLS 574
G ++ I Y LA+ A D +I +FD+ +++ EGH I FS D + L++
Sbjct: 164 GKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVT 223
Query: 575 SGMDGSLRIWDV 586
+ DG ++I+DV
Sbjct: 224 ASDDGYIKIYDV 235
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 46/201 (22%), Positives = 90/201 (44%), Gaps = 11/201 (5%)
Query: 142 TCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGXXXXXXXXXPALDVVAVGCS 201
T PD+ + G+ G + ++ + + KK Y G P +A G
Sbjct: 127 TLAFSPDS--QYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAI 184
Query: 202 DGKIHVHNVRYDEELVTFT-HSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQ 260
DG I++ ++ + L T H+M + +L FS D Q LL + + G I I++++ L
Sbjct: 185 DGIINIFDIATGKLLHTLEGHAM--PIRSLTFSPDSQ-LLVTASDDGYIKIYDVQHANLA 241
Query: 261 SVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCI 320
+ H + ++++ F ++ +S+S+D S+K+W G + H +
Sbjct: 242 GTL-SGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDV----GTRTCVHTFFDHQDQVWGV 296
Query: 321 RFYANGRHILSAGQDRAFRLF 341
++ NG I+S G D+ ++
Sbjct: 297 KYNGNGSKIVSVGDDQEIHIY 317
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 68/144 (47%), Gaps = 4/144 (2%)
Query: 480 VACDSTNTLMISAGYHGD--IKVWDFK-GRDLKSRWEVGCSLVKIVYHRVNGLLATVADD 536
V+ D ++TL I+A D I++WD + G+ +KS + + + LAT
Sbjct: 84 VSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHV 143
Query: 537 LVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIH 596
+ +F V + + + I +S DGK+L S +DG + I+D+ + + +
Sbjct: 144 GKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLE 203
Query: 597 VD-VSITALSLSPNMDVLATAHVD 619
+ I +L+ SP+ +L TA D
Sbjct: 204 GHAMPIRSLTFSPDSQLLVTASDD 227
Score = 33.9 bits (76), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 42/188 (22%), Positives = 75/188 (39%), Gaps = 13/188 (6%)
Query: 400 AQAYVWRLQNFVLGEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISR 459
A +W L+N G+ I + P S + GT G + F ++SG
Sbjct: 102 AHIRLWDLEN---GKQI-KSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKE 157
Query: 460 GSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDF-KGRDLKSRWEVGCSL 518
S + R + ++ +A + S G I ++D G+ L + +
Sbjct: 158 YS---LDTRGKF-----ILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPI 209
Query: 519 VKIVYHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMD 578
+ + + LL T +DD I+++DV + GH + + F D +SS D
Sbjct: 210 RSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSD 269
Query: 579 GSLRIWDV 586
S+++WDV
Sbjct: 270 KSVKVWDV 277
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
Query: 547 LRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVD-VSITALS 605
L + EGH + S SS +D +R+WD+ +QI +I V L+
Sbjct: 70 LDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLA 129
Query: 606 LSPNMDVLATA-HVDQNGVY 624
SP+ LAT HV + ++
Sbjct: 130 FSPDSQYLATGTHVGKVNIF 149
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 55/113 (48%), Gaps = 5/113 (4%)
Query: 233 SSDGQPLLASGASSGVISIWN-LEKRRLQSVIREAHDNAIISLHFFANEP-VLMSASADN 290
S+ PLLA S G+I I N + + ++ + H NAI L F +P +L+S S D+
Sbjct: 80 SNTSHPLLAVAGSRGIIRIINPITMQCIKHYV--GHGNAINELKFHPRDPNLLLSVSKDH 137
Query: 291 SIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSV 343
++++W TD + GH L + G I+S G D + +L+ +
Sbjct: 138 ALRLWNI-QTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRI 189
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 80/171 (46%), Gaps = 15/171 (8%)
Query: 436 GNFAVLGTAGGWIERFNLQSGISRG------SYLDMSERSNYAHNGEVVGVACDSTNTLM 489
G+ V T G R L S+G SY+D N+ ++++ L+
Sbjct: 32 GDPLVFATVGS--NRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDS--NTSHPLL 87
Query: 490 ISAGYHGDIKVWD-FKGRDLKSRWEVGCSLVKIVYH-RVNGLLATVADDLVIRLFDVVAL 547
AG G I++ + + +K G ++ ++ +H R LL +V+ D +RL+++
Sbjct: 88 AVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTD 147
Query: 548 RMVRKF---EGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAI 595
+V F EGH D + + G+ ++S GMD SL++W + R ++AI
Sbjct: 148 TLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAI 198
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Query: 225 GAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIR--EAHDNAIISLHFFANEPV 282
A+ L F LL S + + +WN++ L ++ E H + ++S +
Sbjct: 115 NAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEK 174
Query: 283 LMSASADNSIKMW 295
+MS D+S+K+W
Sbjct: 175 IMSCGMDHSLKLW 187
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 55/113 (48%), Gaps = 5/113 (4%)
Query: 233 SSDGQPLLASGASSGVISIWN-LEKRRLQSVIREAHDNAIISLHFFANEP-VLMSASADN 290
S+ PLLA S G+I I N + + ++ + H NAI L F +P +L+S S D+
Sbjct: 76 SNTSHPLLAVAGSRGIIRIINPITMQCIKHYV--GHGNAINELKFHPRDPNLLLSVSKDH 133
Query: 291 SIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSV 343
++++W TD + GH L + G I+S G D + +L+ +
Sbjct: 134 ALRLWNI-QTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRI 185
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 48/85 (56%), Gaps = 4/85 (4%)
Query: 515 GCSLVKIVYH-RVNGLLATVADDLVIRLFDVVALRMVRKF---EGHTDRITDFCFSEDGK 570
G ++ ++ +H R LL +V+ D +RL+++ +V F EGH D + + G+
Sbjct: 110 GNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGE 169
Query: 571 WLLSSGMDGSLRIWDVILARQIDAI 595
++S GMD SL++W + R ++AI
Sbjct: 170 KIMSCGMDHSLKLWRINSKRMMNAI 194
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Query: 225 GAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIR--EAHDNAIISLHFFANEPV 282
A+ L F LL S + + +WN++ L ++ E H + ++S +
Sbjct: 111 NAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEK 170
Query: 283 LMSASADNSIKMW 295
+MS D+S+K+W
Sbjct: 171 IMSCGMDHSLKLW 183
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 55/113 (48%), Gaps = 5/113 (4%)
Query: 233 SSDGQPLLASGASSGVISIWN-LEKRRLQSVIREAHDNAIISLHFFANEP-VLMSASADN 290
S+ PLLA S G+I I N + + ++ + H NAI L F +P +L+S S D+
Sbjct: 117 SNTSHPLLAVAGSRGIIRIINPITMQCIKHYV--GHGNAINELKFHPRDPNLLLSVSKDH 174
Query: 291 SIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSV 343
++++W TD + GH L + G I+S G D + +L+ +
Sbjct: 175 ALRLWNI-QTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRI 226
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 48/85 (56%), Gaps = 4/85 (4%)
Query: 515 GCSLVKIVYH-RVNGLLATVADDLVIRLFDVVALRMVRKF---EGHTDRITDFCFSEDGK 570
G ++ ++ +H R LL +V+ D +RL+++ +V F EGH D + + G+
Sbjct: 151 GNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGE 210
Query: 571 WLLSSGMDGSLRIWDVILARQIDAI 595
++S GMD SL++W + R ++AI
Sbjct: 211 KIMSCGMDHSLKLWRINSKRMMNAI 235
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Query: 225 GAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIR--EAHDNAIISLHFFANEPV 282
A+ L F LL S + + +WN++ L ++ E H + ++S +
Sbjct: 152 NAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEK 211
Query: 283 LMSASADNSIKMW 295
+MS D+S+K+W
Sbjct: 212 IMSCGMDHSLKLW 224
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/203 (21%), Positives = 90/203 (44%), Gaps = 19/203 (9%)
Query: 143 CIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGXXXXXXXXXPALDVVAVGCSD 202
C+ + D K++ G ++ ++++W+ +T + G V+ G SD
Sbjct: 138 CLQYDD---QKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDER--VIITGSSD 192
Query: 203 GKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSV 262
+ V +V E L T H AV L F++ ++ + + I++W++ ++
Sbjct: 193 STVRVWDVNTGEMLNTLIHHCE-AVLHLRFNNG---MMVTCSKDRSIAVWDMASPTDITL 248
Query: 263 IRE--AHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCI 320
R H A+ + F ++ ++SAS D +IK+W T + +R +GH C+
Sbjct: 249 RRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCE----FVRTLNGHKRGIACL 302
Query: 321 RFYANGRHILSAGQDRAFRLFSV 343
++ R ++S D RL+ +
Sbjct: 303 QY--RDRLVVSGSSDNTIRLWDI 323
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 50/116 (43%), Gaps = 21/116 (18%)
Query: 483 DSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNG---------LLATV 533
D + ++SA IKVW+ C V+ + G L+ +
Sbjct: 263 DFDDKYIVSASGDRTIKVWNTST----------CEFVRTLNGHKRGIACLQYRDRLVVSG 312
Query: 534 ADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILA 589
+ D IRL+D+ +R EGH + + C D K ++S DG +++WD++ A
Sbjct: 313 SSDNTIRLWDIECGACLRVLEGHEELVR--CIRFDNKRIVSGAYDGKIKVWDLVAA 366
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 51/129 (39%), Gaps = 18/129 (13%)
Query: 212 YDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAI 271
++ F ++ G +A L+ SG+S I +W++E V+ E H+ +
Sbjct: 281 WNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVL-EGHEELV 339
Query: 272 ISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILS 331
+ F + ++S + D IK+W DPR A LC+R L
Sbjct: 340 RCIRF--DNKRIVSGAYDGKIKVWDL-VAALDPRA-------PAGTLCLR-------TLV 382
Query: 332 AGQDRAFRL 340
R FRL
Sbjct: 383 EHSGRVFRL 391
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/202 (21%), Positives = 84/202 (41%), Gaps = 11/202 (5%)
Query: 153 KVIVGSQEGSLQLWNISTKKKLYEFKGWGXXXXXXXXXPALDVVAVGCSDGKIHVHNVRY 212
+++ SQ+G + +W+ T K + P+ +A G D K V+ + +
Sbjct: 78 RIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTF 137
Query: 213 D--EELVTFTHSM---RGAVTALAFS-SDGQPLLASGASSGVISIWNLEKRRLQSVIREA 266
D E + S+ ++A +F+ SD Q L ASG G ++W++E +L
Sbjct: 138 DKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASG--DGTCALWDVESGQLLQSFH-G 194
Query: 267 HDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANG 326
H ++ L +E S K ++D G + ++ H + +R+Y +G
Sbjct: 195 HGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSG--QCVQAFETHESDVNSVRYYPSG 252
Query: 327 RHILSAGQDRAFRLFSVIQDQQ 348
S D RL+ + D++
Sbjct: 253 DAFASGSDDATCRLYDLRADRE 274
Score = 37.4 bits (85), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 63/319 (19%), Positives = 119/319 (37%), Gaps = 34/319 (10%)
Query: 308 RFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHVAKRARXXXXX 367
R GH LC+ + + R I+S+ QD ++ S ++ H
Sbjct: 58 RTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVW------DSFTTNKEHAVTMPCTWVMA 111
Query: 368 XXXXXXXPVIAFDCAEIRERDWCNVVTCHMDTAQAYVWRLQNFVLGEHILRPCPENPTAV 427
IA C + + C+V D + + ++ + + L C + +
Sbjct: 112 CAYAPSGCAIA--CGGLDNK--CSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDM 167
Query: 428 KACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYAHNGEVV--GVACDST 485
+ T S G A+ ++++SG S+ + H +V+ +A T
Sbjct: 168 QILTASGDGTCAL----------WDVESGQLLQSF--------HGHGADVLCLDLAPSET 209
Query: 486 NTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIV-YHRVNGLLATVADDLVIRLFDV 544
+S G VWD + +E S V V Y+ A+ +DD RL+D+
Sbjct: 210 GNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDL 269
Query: 545 VALRMVRKF--EGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHV-DVSI 601
A R V + E + FS G+ L + D ++ +WDV+ ++ + + +
Sbjct: 270 RADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRV 329
Query: 602 TALSLSPNMDVLATAHVDQ 620
+ L +SP+ + D
Sbjct: 330 STLRVSPDGTAFCSGSWDH 348
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 34/188 (18%), Positives = 73/188 (38%), Gaps = 47/188 (25%)
Query: 153 KVIVGSQEGSLQLWNISTKKKLYEFKGWGX------------------------------ 182
+++ S +G+ LW++ + + L F G G
Sbjct: 168 QILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDM 227
Query: 183 --------------XXXXXXXXPALDVVAVGCSDGKIHVHNVRYDEELVTFT-HSMRGAV 227
P+ D A G D ++++R D E+ ++ S+
Sbjct: 228 RSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGA 287
Query: 228 TALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSAS 287
+++ FS G+ LL +G + I++W++ K S++ H+N + +L + S S
Sbjct: 288 SSVDFSLSGR-LLFAGYNDYTINVWDVLKGSRVSILF-GHENRVSTLRVSPDGTAFCSGS 345
Query: 288 ADNSIKMW 295
D+++++W
Sbjct: 346 WDHTLRVW 353
Score = 33.1 bits (74), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 27/56 (48%)
Query: 529 LLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIW 584
LL +D I ++DV+ V GH +R++ S DG S D +LR+W
Sbjct: 298 LLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 353
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/171 (20%), Positives = 69/171 (40%), Gaps = 25/171 (14%)
Query: 91 RHSAKVNLLLLFGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTY 150
R+ +NL+ ++L++ +D ++++W+ D + P Y
Sbjct: 103 RNDYYLNLVDWSSGNVLAVALDNSVYLWSASS-------------GDILQLLQMEQPGEY 149
Query: 151 L---------NKVIVGSQEGSLQLWNISTKKKLYEFKGWGXXXXXXXXXPALDVVAVGCS 201
+ N + VG+ +QLW++ +K+L +++ G
Sbjct: 150 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSY--ILSSGSR 207
Query: 202 DGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIW 252
G IH H+VR E V V L ++ DG+ LASG + ++++W
Sbjct: 208 SGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGR-HLASGGNDNLVNVW 257
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 51/119 (42%), Gaps = 9/119 (7%)
Query: 473 HNGEVVGVA-CDSTNTLMISAGYHGD--IKVWDFKGRDLKSRWEVGCSLVKIV----YHR 525
H G V VA C + ++ + G D I++W+ S + + I+ Y
Sbjct: 275 HQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKE 334
Query: 526 VNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIW 584
+ + LVI + +A V + +GHT R+ S DG + S+ D +LR+W
Sbjct: 335 LISGHGFAQNQLVIWKYPTMA--KVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 391
Score = 33.9 bits (76), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 58/116 (50%), Gaps = 9/116 (7%)
Query: 227 VTALAFSSDGQPLLASGASSGVISIWNLEK-RRLQSVIREAHDNAIISLHFFANEPVLMS 285
++++A+ +G LA G SS + +W++++ +RL+++ +H + SL + N +L S
Sbjct: 150 ISSVAWIKEGN-YLAVGTSSAEVQLWDVQQQKRLRNMT--SHSARVGSLSW--NSYILSS 204
Query: 286 ASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLF 341
S I D + + SGHS +R+ +GRH+ S G D ++
Sbjct: 205 GSRSGHIHH--HDVRVAEHHVATL-SGHSQEVCGLRWAPDGRHLASGGNDNLVNVW 257
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/171 (20%), Positives = 69/171 (40%), Gaps = 25/171 (14%)
Query: 91 RHSAKVNLLLLFGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTY 150
R+ +NL+ ++L++ +D ++++W+ D + P Y
Sbjct: 114 RNDYYLNLVDWSSGNVLAVALDNSVYLWS-------------ASSGDILQLLQMEQPGEY 160
Query: 151 L---------NKVIVGSQEGSLQLWNISTKKKLYEFKGWGXXXXXXXXXPALDVVAVGCS 201
+ N + VG+ +QLW++ +K+L +++ G
Sbjct: 161 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSY--ILSSGSR 218
Query: 202 DGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIW 252
G IH H+VR E V V L ++ DG+ LASG + ++++W
Sbjct: 219 SGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGR-HLASGGNDNLVNVW 268
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 51/119 (42%), Gaps = 9/119 (7%)
Query: 473 HNGEVVGVA-CDSTNTLMISAGYHGD--IKVWDFKGRDLKSRWEVGCSLVKIV----YHR 525
H G V VA C + ++ + G D I++W+ S + + I+ Y
Sbjct: 286 HQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKE 345
Query: 526 VNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIW 584
+ + LVI + +A V + +GHT R+ S DG + S+ D +LR+W
Sbjct: 346 LISGHGFAQNQLVIWKYPTMA--KVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 402
Score = 33.9 bits (76), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 58/116 (50%), Gaps = 9/116 (7%)
Query: 227 VTALAFSSDGQPLLASGASSGVISIWNLEK-RRLQSVIREAHDNAIISLHFFANEPVLMS 285
++++A+ +G LA G SS + +W++++ +RL+++ +H + SL + N +L S
Sbjct: 161 ISSVAWIKEGN-YLAVGTSSAEVQLWDVQQQKRLRNMT--SHSARVGSLSW--NSYILSS 215
Query: 286 ASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLF 341
S I D + + SGHS +R+ +GRH+ S G D ++
Sbjct: 216 GSRSGHIHH--HDVRVAEHHVATL-SGHSQEVCGLRWAPDGRHLASGGNDNLVNVW 268
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/198 (22%), Positives = 82/198 (41%), Gaps = 9/198 (4%)
Query: 154 VIVGSQEGSLQLWNISTKKKLYE-FKGWGXXXXXXXXXPA-LDVVAVGCSDGKIHVHNVR 211
V+ GS + +++LWN L + F+G P A GC D + V ++
Sbjct: 112 VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLG 171
Query: 212 YDEELVTFTHSM-RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNA 270
T T RG + +P + + + I IW+ + + + + E H +
Sbjct: 172 QSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL-EGHMSN 230
Query: 271 IISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGR-HI 329
+ F P+++S S D ++K+W T + + L S CI + GR +
Sbjct: 231 VSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVE-KTLNVGLERS---WCIATHPTGRKNY 286
Query: 330 LSAGQDRAFRLFSVIQDQ 347
+++G D F + S+ D+
Sbjct: 287 IASGFDNGFTVLSLGNDE 304
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/143 (20%), Positives = 60/143 (41%), Gaps = 3/143 (2%)
Query: 154 VIVGSQEGSLQLWNISTKKKLYEFKGWGXXXXXXXXXPALDVVAVGCSDGKIHVHNVRYD 213
V+ G ++LWN T+ ++ + + + VG D +I V N
Sbjct: 28 VLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTG 87
Query: 214 EELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIIS 273
E++V F + + ++A +P + SG+ + +WN E E H++ ++
Sbjct: 88 EKVVDF-EAHPDYIRSIAVHPT-KPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMC 145
Query: 274 LHFFANEP-VLMSASADNSIKMW 295
+ F +P S D ++K+W
Sbjct: 146 VAFNPKDPSTFASGCLDRTVKVW 168
Score = 37.0 bits (84), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 29/56 (51%)
Query: 530 LATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWD 585
+ T +DDL I+++D V EGH ++ F ++S DG+L+IW+
Sbjct: 201 MITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
Score = 34.3 bits (77), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 51/111 (45%), Gaps = 3/111 (2%)
Query: 477 VVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKI--VYHRVNGLLATVA 534
V G+ T +++ Y G +++W+++ + +V + V+ R N ++ +
Sbjct: 16 VKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVG-S 74
Query: 535 DDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWD 585
DD IR+F+ V FE H D I ++LS D ++++W+
Sbjct: 75 DDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN 125
Score = 33.5 bits (75), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 44/90 (48%), Gaps = 4/90 (4%)
Query: 265 EAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA 324
EAH + I S+ +P ++S S D ++K+W + + + L + GH +C+ F
Sbjct: 94 EAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNW---ENNWALEQTFEGHEHFVMCVAFNP 150
Query: 325 NGRHILSAG-QDRAFRLFSVIQDQQSRELS 353
++G DR +++S+ Q + L+
Sbjct: 151 KDPSTFASGCLDRTVKVWSLGQSTPNFTLT 180
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/198 (22%), Positives = 82/198 (41%), Gaps = 9/198 (4%)
Query: 154 VIVGSQEGSLQLWNISTKKKLYE-FKGWGXXXXXXXXXPA-LDVVAVGCSDGKIHVHNVR 211
V+ GS + +++LWN L + F+G P A GC D + V ++
Sbjct: 112 VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLG 171
Query: 212 YDEELVTFTHSM-RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNA 270
T T RG + +P + + + I IW+ + + + + E H +
Sbjct: 172 QSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL-EGHMSN 230
Query: 271 IISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGR-HI 329
+ F P+++S S D ++K+W T + + L S CI + GR +
Sbjct: 231 VSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVE-KTLNVGLERS---WCIATHPTGRKNY 286
Query: 330 LSAGQDRAFRLFSVIQDQ 347
+++G D F + S+ D+
Sbjct: 287 IASGFDNGFTVLSLGNDE 304
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/143 (20%), Positives = 60/143 (41%), Gaps = 3/143 (2%)
Query: 154 VIVGSQEGSLQLWNISTKKKLYEFKGWGXXXXXXXXXPALDVVAVGCSDGKIHVHNVRYD 213
V+ G ++LWN T+ ++ + + + VG D +I V N
Sbjct: 28 VLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTG 87
Query: 214 EELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIIS 273
E++V F + + ++A +P + SG+ + +WN E E H++ ++
Sbjct: 88 EKVVDF-EAHPDYIRSIAVHPT-KPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMC 145
Query: 274 LHFFANEP-VLMSASADNSIKMW 295
+ F +P S D ++K+W
Sbjct: 146 VAFNPKDPSTFASGCLDRTVKVW 168
Score = 37.0 bits (84), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 29/56 (51%)
Query: 530 LATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWD 585
+ T +DDL I+++D V EGH ++ F ++S DG+L+IW+
Sbjct: 201 MITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
Score = 34.3 bits (77), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 51/111 (45%), Gaps = 3/111 (2%)
Query: 477 VVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKI--VYHRVNGLLATVA 534
V G+ T +++ Y G +++W+++ + +V + V+ R N ++ +
Sbjct: 16 VKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVG-S 74
Query: 535 DDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWD 585
DD IR+F+ V FE H D I ++LS D ++++W+
Sbjct: 75 DDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN 125
Score = 33.5 bits (75), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 44/90 (48%), Gaps = 4/90 (4%)
Query: 265 EAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA 324
EAH + I S+ +P ++S S D ++K+W + + + L + GH +C+ F
Sbjct: 94 EAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNW---ENNWALEQTFEGHEHFVMCVAFNP 150
Query: 325 NGRHILSAG-QDRAFRLFSVIQDQQSRELS 353
++G DR +++S+ Q + L+
Sbjct: 151 KDPSTFASGCLDRTVKVWSLGQSTPNFTLT 180
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 65/307 (21%), Positives = 129/307 (42%), Gaps = 36/307 (11%)
Query: 78 AVVKRAH--QVATWSRHSAKVNLLL---LFGEHILSIDIDGNMFIWAFKGIEENLAPVGH 132
++VK A + AT++ K+ LL+ + G + D ++ +W+ + P+
Sbjct: 5 SMVKLAEFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSE-KPIAS 63
Query: 133 VKLDDKFTPTCIMHPDTYLNKVIVGS-QEGSLQLWNISTKKK----LYEFKGWGXXXXXX 187
+++D KF H NK+I G+ GSL+L++ + + F
Sbjct: 64 LQVDSKFNDLDWSHN----NKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTV 119
Query: 188 XXXPALD-VVAVGCSDGKIHVHNV-RYDEELVTFTHSMRG-------AVTALAFSSDGQP 238
D V+A G ++G+I + ++ + E +T G V +LA++
Sbjct: 120 KFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAH 179
Query: 239 LLASGASSGVISIWNLEKRRLQSVIREAHDN---------AIISLHFFANEPVLMSASAD 289
+ AS SS SIW+L+ ++ VI ++ + +++ H + V + +D
Sbjct: 180 VFASAGSSNFASIWDLKAKK--EVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSD 237
Query: 290 NSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRH-ILSAGQDRAFRLFSVIQDQQ 348
N + I+D + + L GH L + + H +LS+G+D L++ +Q
Sbjct: 238 NDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQ 297
Query: 349 SRELSQR 355
+ R
Sbjct: 298 LSQFPAR 304
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 60/258 (23%), Positives = 111/258 (43%), Gaps = 42/258 (16%)
Query: 106 ILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTYLNKVIVGSQEGSLQL 165
I+S D + +W + E GH T C MH + +V+ GS++ +L++
Sbjct: 172 IISGSTDRTLKVWNAETGECIHTLYGHTS-----TVRC-MH--LHEKRVVSGSRDATLRV 223
Query: 166 WNISTKKKLYEFKGWGXXXXXXXXXPALDVVAVGC--SDGKIHVHNVR------YDEELV 217
W+I T + L+ G V AV C DG+ V +D E
Sbjct: 224 WDIETGQCLHVLMG--------------HVAAVRCVQYDGRRVVSGAYDFMVKVWDPETE 269
Query: 218 TFTHSMRG---AVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISL 274
T H+++G V +L F DG ++ SG+ I +W++E + H + +
Sbjct: 270 TCLHTLQGHTNRVYSLQF--DGIHVV-SGSLDTSIRVWDVETGNCIHTL-TGHQSLTSGM 325
Query: 275 HFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQ 334
N +L+S +AD+++K+W T + L+ + H + C++F N ++++
Sbjct: 326 ELKDN--ILVSGNADSTVKIWDIKTGQC-LQTLQGPNKHQSAVTCLQFNKN--FVITSSD 380
Query: 335 DRAFRLFSVIQDQQSREL 352
D +L+ + + R L
Sbjct: 381 DGTVKLWDLKTGEFIRNL 398
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/192 (20%), Positives = 82/192 (42%), Gaps = 15/192 (7%)
Query: 152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGXXXXXXXXXPALDVVAVGCSDGKIHVHNVR 211
N+++ GS + +L++W+ T K L G +++ G +D + V N
Sbjct: 130 NRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD--NIIISGSTDRTLKVWNAE 187
Query: 212 YDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAI 271
E + H++ G + + + + SG+ + +W++E + V+ H A+
Sbjct: 188 TGECI----HTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLM-GHVAAV 242
Query: 272 ISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILS 331
+ + V S + D +K+W +T L GH+ ++F +G H++S
Sbjct: 243 RCVQYDGRRVV--SGAYDFMVKVWDPET----ETCLHTLQGHTNRVYSLQF--DGIHVVS 294
Query: 332 AGQDRAFRLFSV 343
D + R++ V
Sbjct: 295 GSLDTSIRVWDV 306
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 46/214 (21%), Positives = 87/214 (40%), Gaps = 15/214 (7%)
Query: 413 GEHILRPCPENPTAVKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNYA 472
G I+ +N V + C V T G W + ++ I D + + A
Sbjct: 129 GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQ--MRDNIIISGSTDRTLKVWNA 186
Query: 473 HNGEVVGVACDSTNTL---------MISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVY 523
GE + T+T+ ++S ++VWD + + V+ V
Sbjct: 187 ETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQ 246
Query: 524 HRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRI 583
+ +++ A D +++++D + +GHT+R+ F DG ++S +D S+R+
Sbjct: 247 YDGRRVVSG-AYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRV 303
Query: 584 WDVILARQIDAIHVDVSITA-LSLSPNMDVLATA 616
WDV I + S+T+ + L N+ V A
Sbjct: 304 WDVETGNCIHTLTGHQSLTSGMELKDNILVSGNA 337
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/203 (21%), Positives = 84/203 (41%), Gaps = 9/203 (4%)
Query: 154 VIVGSQEGSLQLWNISTKKKLYE-FKGWGXXXXXXXXXPA-LDVVAVGCSDGKIHVHNVR 211
V+ GS + +++LWN L + F+G P A GC D + V ++
Sbjct: 112 VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLG 171
Query: 212 YDEELVTFTHSM-RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNA 270
T T RG + +P + + + I IW+ + + + + E H +
Sbjct: 172 QSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL-EGHMSN 230
Query: 271 IISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGR-HI 329
+ F P+++S S D ++K+W T ++ + + CI + GR +
Sbjct: 231 VSFAVFHPTLPIIISGSEDGTLKIWNSSTY----KVEKTLNVGLERSWCIATHPTGRKNY 286
Query: 330 LSAGQDRAFRLFSVIQDQQSREL 352
+++G D F + S+ D+ + L
Sbjct: 287 IASGFDNGFTVLSLGNDEPTLSL 309
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/136 (21%), Positives = 58/136 (42%), Gaps = 3/136 (2%)
Query: 161 GSLQLWNISTKKKLYEFKGWGXXXXXXXXXPALDVVAVGCSDGKIHVHNVRYDEELVTFT 220
G ++LWN T+ ++ + + + VG D +I V N E++V F
Sbjct: 35 GRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDF- 93
Query: 221 HSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANE 280
+ + ++A +P + SG+ + +WN E E H++ ++ + F +
Sbjct: 94 EAHPDYIRSIAVHPT-KPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKD 152
Query: 281 P-VLMSASADNSIKMW 295
P S D ++K+W
Sbjct: 153 PSTFASGCLDRTVKVW 168
Score = 36.2 bits (82), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 29/56 (51%)
Query: 530 LATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWD 585
+ T +DDL I+++D V EGH ++ F ++S DG+L+IW+
Sbjct: 201 MITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
Score = 33.1 bits (74), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 44/90 (48%), Gaps = 4/90 (4%)
Query: 265 EAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA 324
EAH + I S+ +P ++S S D ++K+W ++ + L + GH +C+ F
Sbjct: 94 EAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWEN---NWALEQTFEGHEHFVMCVAFNP 150
Query: 325 NGRHILSAG-QDRAFRLFSVIQDQQSRELS 353
++G DR +++S+ Q + L+
Sbjct: 151 KDPSTFASGCLDRTVKVWSLGQSTPNFTLT 180
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 51/111 (45%), Gaps = 3/111 (2%)
Query: 477 VVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKI--VYHRVNGLLATVA 534
V G+ T +++ Y G +++W+++ + +V + V+ R N ++ +
Sbjct: 16 VKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVG-S 74
Query: 535 DDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWD 585
DD IR+F+ V FE H D I ++LS D ++++W+
Sbjct: 75 DDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN 125
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/171 (20%), Positives = 69/171 (40%), Gaps = 25/171 (14%)
Query: 91 RHSAKVNLLLLFGEHILSIDIDGNMFIWAFKGIEENLAPVGHVKLDDKFTPTCIMHPDTY 150
R+ +NL+ ++L++ +D ++++W+ D + P Y
Sbjct: 23 RNDYYLNLVDWSSGNVLAVALDNSVYLWSASS-------------GDILQLLQMEQPGEY 69
Query: 151 L---------NKVIVGSQEGSLQLWNISTKKKLYEFKGWGXXXXXXXXXPALDVVAVGCS 201
+ N + VG+ +QLW++ +K+L +++ G
Sbjct: 70 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSY--ILSSGSR 127
Query: 202 DGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIW 252
G IH H+VR E V V L ++ DG+ LASG + ++++W
Sbjct: 128 SGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRH-LASGGNDNLVNVW 177
Score = 34.3 bits (77), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 58/116 (50%), Gaps = 9/116 (7%)
Query: 227 VTALAFSSDGQPLLASGASSGVISIWNLEK-RRLQSVIREAHDNAIISLHFFANEPVLMS 285
++++A+ +G LA G SS + +W++++ +RL+++ +H + SL + N +L S
Sbjct: 70 ISSVAWIKEGN-YLAVGTSSAEVQLWDVQQQKRLRNMT--SHSARVGSLSW--NSYILSS 124
Query: 286 ASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLF 341
S I D + + SGHS +R+ +GRH+ S G D ++
Sbjct: 125 GSRSGHIHH--HDVRVAEHHVATL-SGHSQEVCGLRWAPDGRHLASGGNDNLVNVW 177
Score = 34.3 bits (77), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 51/119 (42%), Gaps = 9/119 (7%)
Query: 473 HNGEVVGVA-CDSTNTLMISAGYHGD--IKVWDFKGRDLKSRWEVGCSLVKIV----YHR 525
H G V VA C + ++ + G D I++W+ S + + I+ Y
Sbjct: 195 HQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKE 254
Query: 526 VNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIW 584
+ + LVI + +A V + +GHT R+ S DG + S+ D +LR+W
Sbjct: 255 LISGHGFAQNQLVIWKYPTMA--KVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 311
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 44/203 (21%), Positives = 83/203 (40%), Gaps = 9/203 (4%)
Query: 154 VIVGSQEGSLQLWNISTKKKLYE-FKGWGXXXXXXXXXPA-LDVVAVGCSDGKIHVHNVR 211
V+ GS + +++LWN L + F+G P A GC D + V ++
Sbjct: 112 VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLG 171
Query: 212 YDEELVTFTHSM-RGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNA 270
T T RG + +P + + + I IW+ + + + + E H +
Sbjct: 172 QSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL-EGHMSN 230
Query: 271 IISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGR-HI 329
+ F P+++S S D ++K+W T + L + CI + GR +
Sbjct: 231 VSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTL----NVGLERSWCIATHPTGRKNY 286
Query: 330 LSAGQDRAFRLFSVIQDQQSREL 352
+++G D F + S+ D+ + L
Sbjct: 287 IASGFDNGFTVLSLGNDEPTLSL 309
Score = 37.7 bits (86), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 28/136 (20%), Positives = 58/136 (42%), Gaps = 3/136 (2%)
Query: 161 GSLQLWNISTKKKLYEFKGWGXXXXXXXXXPALDVVAVGCSDGKIHVHNVRYDEELVTFT 220
G +++WN T+ ++ + + + VG D +I V N E++V F
Sbjct: 35 GRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDF- 93
Query: 221 HSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANE 280
+ + ++A +P + SG+ + +WN E E H++ ++ + F +
Sbjct: 94 EAHPDYIRSIAVHPT-KPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKD 152
Query: 281 P-VLMSASADNSIKMW 295
P S D ++K+W
Sbjct: 153 PSTFASGCLDRTVKVW 168
Score = 36.2 bits (82), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 29/56 (51%)
Query: 530 LATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWD 585
+ T +DDL I+++D V EGH ++ F ++S DG+L+IW+
Sbjct: 201 MITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
Score = 33.1 bits (74), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 51/111 (45%), Gaps = 3/111 (2%)
Query: 477 VVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKI--VYHRVNGLLATVA 534
V G+ T +++ Y G +++W+++ + +V + V+ R N ++ +
Sbjct: 16 VKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVG-S 74
Query: 535 DDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWD 585
DD IR+F+ V FE H D I ++LS D ++++W+
Sbjct: 75 DDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN 125
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Query: 265 EAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYA 324
EAH + I S+ +P ++S S D ++K+W ++ + L + GH +C+ F
Sbjct: 94 EAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWEN---NWALEQTFEGHEHFVMCVAFNP 150
Query: 325 NGRHILSAG-QDRAFRLFSVIQ 345
++G DR +++S+ Q
Sbjct: 151 KDPSTFASGCLDRTVKVWSLGQ 172
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 35/161 (21%), Positives = 73/161 (45%), Gaps = 10/161 (6%)
Query: 195 VVAVGCSDGKIHVHNVRYDEEL---VTFTHSMRGAVTALAFSSDGQPLLASGASSGVISI 251
++A G +D KI + +V+YD+ V + + A+ ++A+ LLA+G+ +SI
Sbjct: 26 ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPH-TSLLAAGSFDSTVSI 84
Query: 252 WNLEKRRLQS------VIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPR 305
W E+ ++ I E H+N + + + + L + S D S+ +W D + +
Sbjct: 85 WAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYE 144
Query: 306 LLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQD 346
+ HS + ++ + + S+ D R++ D
Sbjct: 145 CISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDD 185
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 30/51 (58%)
Query: 536 DLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDV 586
D + ++DV ++ + GHTDRI + + K +S+ MD ++RIWD+
Sbjct: 289 DNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDL 339
Score = 38.9 bits (89), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 45/225 (20%), Positives = 94/225 (41%), Gaps = 30/225 (13%)
Query: 154 VIVGSQEGSLQLWNISTKKKLYEFKGWGXXXXXXXXXPALDV--VAVGCSDGKIHV---- 207
++ GS + ++++W+I + F+G ++ + G D +HV
Sbjct: 176 LVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLP 235
Query: 208 -------HNVRYDEELV--------TFTHSMRGAVTALAFSSDGQPLLASGASSGVISIW 252
H +D LV F +RG + ++ S ++ SG+ + +W
Sbjct: 236 KESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVW 295
Query: 253 NLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSG 312
++ + + ++ H + I S + +SAS D +I++W D +G+ L+ G
Sbjct: 296 DVAQMKCLYIL-SGHTDRIYSTIYDHERKRCISASMDTTIRIW--DLENGE--LMYTLQG 350
Query: 313 HSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHV 357
H+A +R + + ++SA D + R + + SR+ S H
Sbjct: 351 HTALVGLLRL--SDKFLVSAAADGSIRGWDA--NDYSRKFSYHHT 391
Score = 37.7 bits (86), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 67/142 (47%), Gaps = 11/142 (7%)
Query: 488 LMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKI---VYHRVNGLLATVADDLVIRLFDV 544
+++S Y + VWD +K + + +I +Y + + D IR++D+
Sbjct: 282 IVVSGSYDNTLIVWDVA--QMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDL 339
Query: 545 VALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVI-LARQIDAIHVDVS-IT 602
++ +GHT + S+ K+L+S+ DGS+R WD +R+ H ++S IT
Sbjct: 340 ENGELMYTLQGHTALVGLLRLSD--KFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAIT 397
Query: 603 ALSLSPNMDVLATAHVDQNGVY 624
+S N +L + +Q +Y
Sbjct: 398 TFYVSDN--ILVSGSENQFNIY 417
Score = 36.6 bits (83), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 36/173 (20%), Positives = 72/173 (41%), Gaps = 27/173 (15%)
Query: 194 DVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWN 253
+ V G D I V++ + L+ + G V AL ++ G +L SG++ + +W+
Sbjct: 133 NYVITGADDKMIRVYDSINKKFLLQLS-GHDGGVWALKYAHGG--ILVSGSTDRTVRVWD 189
Query: 254 LEKRRLQSVIREAHDNAIISLHF--FANEPVLMSASADNSIKMW---------------- 295
++K V E H++ + L + N +++ S DN++ +W
Sbjct: 190 IKKGCCTHVF-EGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHD 248
Query: 296 ---IFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQ 345
+F T + +P + GH A + +G ++S D ++ V Q
Sbjct: 249 YPLVFHTPEENPYFVGVLRGHMASVRTVS--GHGNIVVSGSYDNTLIVWDVAQ 299
Score = 34.3 bits (77), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 532 TVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDV 586
T ADD +IR++D + + + + GH + ++ G L+S D ++R+WD+
Sbjct: 137 TGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGI-LVSGSTDRTVRVWDI 190
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 528 GLLATVADDLVIRLFDVVALRMVRKFEGH--TDRITDFCFSEDGKWLLSSGMDGSLRIWD 585
G+L + + D +R++D+ FEGH T R D ++ K++++ D +L +W
Sbjct: 174 GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWK 233
Query: 586 V 586
+
Sbjct: 234 L 234
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 45/206 (21%), Positives = 89/206 (43%), Gaps = 18/206 (8%)
Query: 96 VNLLLLFGEHILSIDIDGNMFIW-AFKGIEENLAPVGHVKLDDKFTPTCIM--HPDTYLN 152
+NLL +++++ ++ N+++W A G LA + D+ + H ++L+
Sbjct: 96 LNLLDWSNLNVVAVALERNVYVWNADSGSVSALA-----ETDESTYVASVKWSHDGSFLS 150
Query: 153 KVIVGSQEGSLQLWNISTKKKLYEFKGWGXXXXXXXXXPALDVVAVGCSDGKIHVHNVRY 212
VG G + ++++ ++ KL G V++ G G IH H+VR
Sbjct: 151 ---VGLGNGLVDIYDVESQTKLRTMAG--HQARVGCLSWNRHVLSSGSRSGAIHHHDVRI 205
Query: 213 DEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAII 272
+ V LA+ SDG LASG + V+ IW+ + + + H+ A+
Sbjct: 206 ANHQIGTLQGHSSEVCGLAWRSDGL-QLASGGNDNVVQIWD-ARSSIPKFTKTNHNAAVK 263
Query: 273 SLHFFANEPVLMS---ASADNSIKMW 295
++ + + L++ + D I W
Sbjct: 264 AVAWCPWQSNLLATGGGTMDKQIHFW 289
Score = 36.2 bits (82), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 69/160 (43%), Gaps = 12/160 (7%)
Query: 472 AHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKG---RDLKSRWEVGCSLVKIVYHRVNG 528
H+ EV G+A S + S G +++WD + + K+ V + N
Sbjct: 215 GHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSN- 273
Query: 529 LLATVAD--DLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSG--MDGSLRIW 584
LLAT D I ++ V + + ++T +S K ++S+ D +L IW
Sbjct: 274 LLATGGGTMDKQIHFWNAATGARVNTVDAGS-QVTSLIWSPHSKEIMSTHGFPDNNLSIW 332
Query: 585 DVI---LARQIDAIHVDVSITALSLSPNMDVLATAHVDQN 621
L +Q+D D + +LSP+ +L+TA D+N
Sbjct: 333 SYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDEN 372
Score = 30.0 bits (66), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 20/42 (47%)
Query: 545 VALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDV 586
+A + +GH+ + + DG L S G D ++IWD
Sbjct: 205 IANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDA 246
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 38.1 bits (87), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 59/133 (44%), Gaps = 10/133 (7%)
Query: 213 DEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWN-LEKRRL--QSVIREAHDN 269
+E L T VT +A+ S+ L+AS SG + +W LEK L + HD+
Sbjct: 83 NESLCTAGVQTEAGVTDVAWVSEKGILVAS--DSGAVELWEILEKESLLVNKFAKYEHDD 140
Query: 270 AIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHI 329
+ +L F++ +S D S+K+W +L+ + HS+ C+ I
Sbjct: 141 IVKTLSVFSDGTQAVSGGKDFSVKVWDL----SQKAVLKSYNAHSSEVNCVAACPGKDTI 196
Query: 330 -LSAGQDRAFRLF 341
LS G+D L+
Sbjct: 197 FLSCGEDGRILLW 209
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/146 (19%), Positives = 60/146 (41%), Gaps = 4/146 (2%)
Query: 152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGXXXXXXXXXPALDVVAVGCS-DGKIHVHNV 210
+ + G ++ S+++W++S K L + P D + + C DG+I + +
Sbjct: 152 TQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDT 211
Query: 211 RYDEELVTFTHSMRGAV-TALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDN 269
R + + T++ + + A G +G +S+ N+ K + H
Sbjct: 212 RKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNI-KNPDSAQTSAVHSQ 270
Query: 270 AIISLHF-FANEPVLMSASADNSIKM 294
I L + + + P L S S D ++ +
Sbjct: 271 NITGLAYSYHSSPFLASISEDCTVAV 296
Score = 29.3 bits (64), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 78/200 (39%), Gaps = 18/200 (9%)
Query: 513 EVGCSLVKIVYHRVNGLLATVADDLVIRLFDVVALR--MVRKFEG--HTDRITDFCFSED 568
E G + V V + G+L +D + L++++ +V KF H D + D
Sbjct: 94 EAGVTDVAWVSEK--GIL-VASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSD 150
Query: 569 GKWLLSSGMDGSLRIWDVILARQIDAIHVDVS-ITALSLSPNMDVLATAHVDQNGVYLWV 627
G +S G D S+++WD+ + + + S + ++ P D + + + + LW
Sbjct: 151 GTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWD 210
Query: 628 NRCMFSGDSNIDSYASGKEIVSVKM-PSVSSVEGCQDE-------NSSQPDVHRTDRVPK 679
R + ID AS SV P C DE N PD +T V
Sbjct: 211 TRKPKPA-TRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHS 269
Query: 680 DSF-GLPTFKQQIPDLVTLS 698
+ GL P L ++S
Sbjct: 270 QNITGLAYSYHSSPFLASIS 289
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 38.1 bits (87), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 25/123 (20%), Positives = 55/123 (44%), Gaps = 2/123 (1%)
Query: 238 PLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIF 297
P + + G I+++ + + I A D++ + F P +++ ++ +K+W F
Sbjct: 161 PEIVTVGEDGRINLFRADHKEAVRTIDNA-DSSTLHAVTFLRTPEILTVNSIGQLKIWDF 219
Query: 298 DTTDGDPRLLRFRSGHSAPPLCIRFYANGRHIL-SAGQDRAFRLFSVIQDQQSRELSQRH 356
+P + +G P C+ + N +H++ + GQD ++ V Q L + H
Sbjct: 220 RQQGNEPSQILSLTGDRVPLHCVDRHPNQQHVVATGGQDGMLSIWDVRQGTMPVSLLKAH 279
Query: 357 VAK 359
A+
Sbjct: 280 EAE 282
Score = 37.4 bits (85), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 237 QPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPV-LMSASADNSIKMW 295
Q ++A+G G++SIW++ + + + +AH+ + +HF + P L + S D S+ W
Sbjct: 249 QHVVATGGQDGMLSIWDVRQGTMPVSLLKAHEAEMWEVHFHPSNPEHLFTCSEDGSLWHW 308
Query: 296 IFDTTDGDPRLLRFRSGHSA 315
T + L + G S+
Sbjct: 309 DASTDVPEKSSLFHQGGRSS 328
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 37.7 bits (86), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 27/131 (20%), Positives = 59/131 (45%), Gaps = 5/131 (3%)
Query: 213 DEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIR--EAHDNA 270
D E VT V ++A++ G LLA+ + + +W +++ + +H
Sbjct: 94 DFECVTTLEGHENEVKSVAWAPSGN-LLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQD 152
Query: 271 IISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHIL 330
+ + + ++ +L SAS D+++K+ + + D GH + + F +G+ +
Sbjct: 153 VKHVVWHPSQELLASASYDDTVKL--YREEEDDWVCCATLEGHESTVWSLAFDPSGQRLA 210
Query: 331 SAGQDRAFRLF 341
S DR R++
Sbjct: 211 SCSDDRTVRIW 221
Score = 36.2 bits (82), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 65/170 (38%), Gaps = 24/170 (14%)
Query: 427 VKACTISACGNFAVLGTAGGWIERFNLQSGISRGSYLDMSERSNY-AHNGEVVGVACDST 485
V+ S CGN+ L +A F+ + I + + D + H EV VA +
Sbjct: 64 VRKVAWSPCGNY--LASAS-----FDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPS 116
Query: 486 NTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLV---------KIVYHRVNGLLATVADD 536
L+ + + VW+ D E C V +V+H LLA+ + D
Sbjct: 117 GNLLATCSRDKSVWVWEVDEED-----EYECVSVLNSHTQDVKHVVWHPSQELLASASYD 171
Query: 537 LVIRLFDVVALRMV--RKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIW 584
++L+ V EGH + F G+ L S D ++RIW
Sbjct: 172 DTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIW 221
Score = 32.7 bits (73), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 33/150 (22%), Positives = 64/150 (42%), Gaps = 10/150 (6%)
Query: 480 VACDSTNTLMISAGYHGDIKVWDFKGRD--LKSRWEVGC--SLVKIVYHRVNGLLATVAD 535
+A + TL+ S G I++W +G KS G ++ K+ + LA+ +
Sbjct: 22 LAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASF 81
Query: 536 DLVIRLF--DVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQID 593
D ++ + V EGH + + ++ G L + D S+ +W+V + +
Sbjct: 82 DATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYE 141
Query: 594 AIHVDVSITA----LSLSPNMDVLATAHVD 619
+ V S T + P+ ++LA+A D
Sbjct: 142 CVSVLNSHTQDVKHVVWHPSQELLASASYD 171
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 37.4 bits (85), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 36/175 (20%), Positives = 73/175 (41%), Gaps = 27/175 (15%)
Query: 194 DVVAVGCSDGKIHVHNVRYDEELVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWN 253
+ V G D I V++ + L+ + G V AL ++ G +L SG++ + +W+
Sbjct: 133 NYVITGADDKXIRVYDSINKKFLLQLS-GHDGGVWALKYAHGG--ILVSGSTDRTVRVWD 189
Query: 254 LEKRRLQSVIREAHDNAIISLHF--FANEPVLMSASADNSIKMW---------------- 295
++K V E H++ + L + N +++ S DN++ +W
Sbjct: 190 IKKGCCTHVF-EGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHD 248
Query: 296 ---IFDTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQ 347
+F T + +P + GH A + +G ++S D ++ V Q +
Sbjct: 249 YPLVFHTPEENPYFVGVLRGHXASVRTVS--GHGNIVVSGSYDNTLIVWDVAQXK 301
Score = 37.0 bits (84), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 45/225 (20%), Positives = 92/225 (40%), Gaps = 30/225 (13%)
Query: 154 VIVGSQEGSLQLWNISTKKKLYEFKGWGXXXXXXXXXPALDV--VAVGCSDGKIHV---- 207
++ GS + ++++W+I + F+G ++ + G D +HV
Sbjct: 176 LVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLP 235
Query: 208 -------HNVRYDEELV--------TFTHSMRGAVTALAFSSDGQPLLASGASSGVISIW 252
H +D LV F +RG ++ S ++ SG+ + +W
Sbjct: 236 KESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTVSGHGNIVVSGSYDNTLIVW 295
Query: 253 NLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIFDTTDGDPRLLRFRSG 312
++ + + ++ H + I S + +SAS D +I++W D +G+ L G
Sbjct: 296 DVAQXKCLYIL-SGHTDRIYSTIYDHERKRCISASXDTTIRIW--DLENGE--LXYTLQG 350
Query: 313 HSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQDQQSRELSQRHV 357
H+A +R + + ++SA D + R + + SR+ S H
Sbjct: 351 HTALVGLLRL--SDKFLVSAAADGSIRGWDA--NDYSRKFSYHHT 391
Score = 36.6 bits (83), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 49/95 (51%), Gaps = 6/95 (6%)
Query: 532 TVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVI-LAR 590
+ + D IR++D+ + +GHT + S+ K+L+S+ DGS+R WD +R
Sbjct: 327 SASXDTTIRIWDLENGELXYTLQGHTALVGLLRLSD--KFLVSAAADGSIRGWDANDYSR 384
Query: 591 QIDAIHVDVS-ITALSLSPNMDVLATAHVDQNGVY 624
+ H ++S IT +S N +L + +Q +Y
Sbjct: 385 KFSYHHTNLSAITTFYVSDN--ILVSGSENQFNIY 417
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 28/51 (54%)
Query: 536 DLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDV 586
D + ++DV + + GHTDRI + + K +S+ D ++RIWD+
Sbjct: 289 DNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDL 339
Score = 33.9 bits (76), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 532 TVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDV 586
T ADD IR++D + + + + GH + ++ G L+S D ++R+WD+
Sbjct: 137 TGADDKXIRVYDSINKKFLLQLSGHDGGVWALKYAHGGI-LVSGSTDRTVRVWDI 190
Score = 30.8 bits (68), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 528 GLLATVADDLVIRLFDVVALRMVRKFEGH--TDRITDFCFSEDGKWLLSSGMDGSLRIWD 585
G+L + + D +R++D+ FEGH T R D ++ K++++ D +L +W
Sbjct: 174 GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWK 233
Query: 586 V 586
+
Sbjct: 234 L 234
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 46/228 (20%), Positives = 86/228 (37%), Gaps = 38/228 (16%)
Query: 137 DKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGXXXXXXXXXPALDVV 196
D+ + HP T+ + V VGS+ G + LWN K K KG +
Sbjct: 119 DRRATSLAWHP-THPSTVAVGSKGGDIMLWNFGIKDKPTFIKG----------------I 161
Query: 197 AVGCSDGKIHVHNVRYDE------ELVTFTHSMRGAVTALAFSSD-------------GQ 237
G S + + + ++ E T +G + + SSD
Sbjct: 162 GAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASS 221
Query: 238 PLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIF 297
++ +G + G + + N++ + L ++ ++L+ + L +AS D ++K+W
Sbjct: 222 RMVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDW-FLATASVDQTVKIWDL 280
Query: 298 DTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQ 345
G L + H P F +G +L+ Q R++S Q
Sbjct: 281 RQVRGKASFL-YSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQ 327
Score = 32.7 bits (73), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 25/118 (21%), Positives = 54/118 (45%), Gaps = 15/118 (12%)
Query: 484 STNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNG----LLATVADDLVI 539
+++ ++++ G++ + + G++L W + K+ + +N LAT + D +
Sbjct: 219 ASSRMVVTGDNVGNVILLNMDGKEL---WNLRMHKKKVTHVALNPCCDWFLATASVDQTV 275
Query: 540 RLFDVVALRMVRKFE---GHTDRITDFCFSEDGKWLLSSGMDGSLRI-----WDVILA 589
+++D+ +R F H + CFS DG LL++ +R+ WD L
Sbjct: 276 KIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLG 333
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 46/228 (20%), Positives = 86/228 (37%), Gaps = 38/228 (16%)
Query: 137 DKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGXXXXXXXXXPALDVV 196
D+ + HP T+ + V VGS+ G + LWN K K KG +
Sbjct: 119 DRRATSLAWHP-THPSTVAVGSKGGDIMLWNFGIKDKPTFIKG----------------I 161
Query: 197 AVGCSDGKIHVHNVRYDE------ELVTFTHSMRGAVTALAFSSD-------------GQ 237
G S + + + ++ E T +G + + SSD
Sbjct: 162 GAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASS 221
Query: 238 PLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIF 297
++ +G + G + + N++ + L ++ ++L+ + L +AS D ++K+W
Sbjct: 222 RMVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDW-FLATASVDQTVKIWDL 280
Query: 298 DTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQ 345
G L + H P F +G +L+ Q R++S Q
Sbjct: 281 RQVRGKASFL-YSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQ 327
Score = 32.7 bits (73), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 25/118 (21%), Positives = 54/118 (45%), Gaps = 15/118 (12%)
Query: 484 STNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNG----LLATVADDLVI 539
+++ ++++ G++ + + G++L W + K+ + +N LAT + D +
Sbjct: 219 ASSRMVVTGDNVGNVILLNMDGKEL---WNLRMHKKKVTHVALNPCCDWFLATASVDQTV 275
Query: 540 RLFDVVALRMVRKFE---GHTDRITDFCFSEDGKWLLSSGMDGSLRI-----WDVILA 589
+++D+ +R F H + CFS DG LL++ +R+ WD L
Sbjct: 276 KIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLG 333
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 34/152 (22%), Positives = 69/152 (45%), Gaps = 32/152 (21%)
Query: 451 FNLQSGI-SRGSYLDMSERSNYAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLK 509
F+L++ + ++ SY+ +S Y G+V+G I ++D + R++K
Sbjct: 481 FDLKTPLRAKPSYISISPSETYIAAGDVMG-----------------KILLYDLQSREVK 523
Query: 510 -SRWEVGCSLVKIVYHRV-----------NGLLATVADDLVIRLFDVV-ALRMVRKFEGH 556
SRW S + + + L+AT + D I ++ V +++++ H
Sbjct: 524 TSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAH 583
Query: 557 TDRITDFCFSEDGKWLLSSGMDGSLRIWDVIL 588
D + + + E L+SSG D ++ W+V+L
Sbjct: 584 KDGVNNLLW-ETPSTLVSSGADACIKRWNVVL 614
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 46/228 (20%), Positives = 86/228 (37%), Gaps = 38/228 (16%)
Query: 137 DKFTPTCIMHPDTYLNKVIVGSQEGSLQLWNISTKKKLYEFKGWGXXXXXXXXXPALDVV 196
D+ + HP T+ + V VGS+ G + LWN K K KG +
Sbjct: 120 DRRATSLAWHP-THPSTVAVGSKGGDIMLWNFGIKDKPTFIKG----------------I 162
Query: 197 AVGCSDGKIHVHNVRYDE------ELVTFTHSMRGAVTALAFSSD-------------GQ 237
G S + + + ++ E T +G + + SSD
Sbjct: 163 GAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASS 222
Query: 238 PLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSASADNSIKMWIF 297
++ +G + G + + N++ + L ++ ++L+ + L +AS D ++K+W
Sbjct: 223 RMVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDW-FLATASVDQTVKIWDL 281
Query: 298 DTTDGDPRLLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFSVIQ 345
G L + H P F +G +L+ Q R++S Q
Sbjct: 282 RQVRGKASFL-YSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQ 328
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/118 (21%), Positives = 54/118 (45%), Gaps = 15/118 (12%)
Query: 484 STNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNG----LLATVADDLVI 539
+++ ++++ G++ + + G++L W + K+ + +N LAT + D +
Sbjct: 220 ASSRMVVTGDNVGNVILLNMDGKEL---WNLRMHKKKVTHVALNPCCDWFLATASVDQTV 276
Query: 540 RLFDVVALRMVRKFE---GHTDRITDFCFSEDGKWLLSSGMDGSLRI-----WDVILA 589
+++D+ +R F H + CFS DG LL++ +R+ WD L
Sbjct: 277 KIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLG 334
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 35.0 bits (79), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Query: 556 HTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVSITALSL--SPNMDVL 613
HT + D C+S+DG + ++ D + ++WD+ + I D + + +PN +
Sbjct: 85 HTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCV 144
Query: 614 ATAHVDQNGVYLWVNR 629
T D+ + W R
Sbjct: 145 MTGSWDKT-LKFWDTR 159
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 16/77 (20%)
Query: 525 RVNGLLATVADDLVIRLFDVV----ALRMVRKFEG------------HTDRITDFCFSED 568
R + +LAT + D ++L+DV L + + G H ++ CF+ D
Sbjct: 197 RYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSD 256
Query: 569 GKWLLSSGMDGSLRIWD 585
G LL+ G D +R+W+
Sbjct: 257 GLHLLTVGTDNRMRLWN 273
Score = 29.3 bits (64), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 24/117 (20%), Positives = 53/117 (45%), Gaps = 14/117 (11%)
Query: 239 LLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFAN-EPVLMSASADNSIKMW-- 295
L+A G + + +L+ ++ + H I+++ + + +L +ASAD+ +K+W
Sbjct: 158 LVAVGTRGPKVQLCDLKSGSCSHIL-QGHRQEILAVSWSPRYDYILATASADSRVKLWDV 216
Query: 296 --------IFDTTDGDPR--LLRFRSGHSAPPLCIRFYANGRHILSAGQDRAFRLFS 342
D +G + + H+ + F ++G H+L+ G D RL++
Sbjct: 217 RRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWN 273
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 34.3 bits (77), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 27/122 (22%), Positives = 56/122 (45%), Gaps = 14/122 (11%)
Query: 480 VACDSTNTLMISAGYHGDIKVWDFKGRDLK-SRWEVGCSLVKIVYHRV-----------N 527
++ + T + + G I ++D + R++K SRW S + + +
Sbjct: 494 ISISPSETYIAAGDVXGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEE 553
Query: 528 GLLATVADDLVIRLFDVV-ALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDV 586
L+AT + D I ++ V ++++ H D + + + E L+SSG D ++ W+V
Sbjct: 554 DLVATGSLDTNIFIYSVKRPXKIIKALNAHKDGVNNLLW-ETPSTLVSSGADACIKRWNV 612
Query: 587 IL 588
+L
Sbjct: 613 VL 614
>pdb|1S4U|X Chain X, Crystal Structure Analysis Of The Beta-Propeller Protein
Ski8p
Length = 407
Score = 34.3 bits (77), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 13/70 (18%)
Query: 556 HTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHV---DVSITALSLSPNMDV 612
H+ + F++ G+ L S+G DG LR WDV +I +++ D+ I D+
Sbjct: 300 HSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEE-------DI 352
Query: 613 LATAHVDQNG 622
LA VD++G
Sbjct: 353 LA---VDEHG 359
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/51 (23%), Positives = 29/51 (56%)
Query: 471 YAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKI 521
+AH+ V+ ++ + + + SAG+ G ++ WD K ++ + + C ++I
Sbjct: 298 FAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEI 348
>pdb|1SQ9|A Chain A, Structure Of Ski8p, A Wd Repeat Protein Involved In Mrna
Degradation And Meiotic Recombination
Length = 397
Score = 34.3 bits (77), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 13/71 (18%)
Query: 555 GHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHV---DVSITALSLSPNMD 611
H+ + F++ G+ L S+G DG LR WDV +I +++ D+ I D
Sbjct: 289 AHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEE-------D 341
Query: 612 VLATAHVDQNG 622
+LA VD++G
Sbjct: 342 ILA---VDEHG 349
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 12/51 (23%), Positives = 29/51 (56%)
Query: 471 YAHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKI 521
+AH+ V+ ++ + + + SAG+ G ++ WD K ++ + + C ++I
Sbjct: 288 FAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEI 338
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 33.9 bits (76), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 523 YHRVNGLLATVADDLVIRLFDVVALRMVRKFEGHTDRITDFCFSEDGKWLLSSGMDGSLR 582
++ N LL + +DD +R++ F GH+ I + D K ++S MDGS+R
Sbjct: 255 FNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDDK-VISCSMDGSVR 313
Query: 583 IW 584
+W
Sbjct: 314 LW 315
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 12/84 (14%)
Query: 513 EVGCSLVKIVYHRVNGLLAT----VADDL--------VIRLFDVVALRMVRKFEGHTDRI 560
E G S + H +G L V DD I ++ + K GH I
Sbjct: 191 ETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPI 250
Query: 561 TDFCFSEDGKWLLSSGMDGSLRIW 584
+ F++ K LLS+ DG+LRIW
Sbjct: 251 SVLEFNDTNKLLLSASDDGTLRIW 274
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 32.7 bits (73), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 31/170 (18%), Positives = 69/170 (40%), Gaps = 20/170 (11%)
Query: 472 AHNGEVVGVACDSTNTLMISAGYHGDIKVWDFKGRDLKSRWEVGCSLVKIVYHRVNGLLA 531
H G + + D ++ IK+WD + W+ + ++ +
Sbjct: 72 GHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFL 131
Query: 532 TVADDLV-----IRLFDV-----------VALRMVRKFEGHT--DRITDFCFSEDGKWLL 573
+ D+++ I ++++ V+ + K H D T +S GK+++
Sbjct: 132 AILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYII 191
Query: 574 SSGMDGSLRIWDVILARQ-IDAIHV-DVSITALSLSPNMDVLATAHVDQN 621
+ DG + +DV + +D+I + + SI+ + SP++ T+ D N
Sbjct: 192 AGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTN 241
>pdb|3GRE|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Vps15 Wd
Repeat Domain
Length = 437
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 23/41 (56%)
Query: 216 LVTFTHSMRGAVTALAFSSDGQPLLASGASSGVISIWNLEK 256
+ T + ++T+ A S P L +G+ GVI IWNL++
Sbjct: 55 IATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKE 95
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 31/147 (21%), Positives = 64/147 (43%), Gaps = 6/147 (4%)
Query: 152 NKVIVGSQEGSLQLWNISTKKKLYEFKGWGXXXXXXXXXPALDVVAVGCS-DGKIHVHNV 210
+ + GS++ +++W+++ + L ++ P D V + CS D +I + +
Sbjct: 140 TQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDT 199
Query: 211 RYDEELVTFTHSMRGAV-TALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREA-HD 268
R + S G + T+LA+ + G +G +S+ ++ + V+ A H
Sbjct: 200 RCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSL--VDTKSTSCVLSSAVHS 257
Query: 269 NAIISLHFFANE-PVLMSASADNSIKM 294
+ L F + P L S S D S+ +
Sbjct: 258 QCVTGLVFSPHSVPFLASLSEDCSLAV 284
Score = 29.6 bits (65), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 18/80 (22%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
Query: 552 KFEGHTDRITDFCFSEDGKWLLSSGMDGSLRIWDVILARQIDAIHVDVS-ITALSLSPNM 610
K+E H D ++ G +S D +++WD+ + + + +T ++ SP+
Sbjct: 123 KYE-HDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHK 181
Query: 611 DVLATAHVDQNGVYLWVNRC 630
D + + + N + LW RC
Sbjct: 182 DSVFLSCSEDNRILLWDTRC 201
>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|I Chain I, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|J Chain J, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
Length = 351
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 473 HNGEVVGVACDSTNTLMISAGYHGDIKVW 501
HNGEV V+ + T T++ SAG G +++W
Sbjct: 305 HNGEVWSVSWNLTGTILSSAGDDGKVRLW 333
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 473 HNGEVVGVACDSTNTLMISAGYHGDIKVW 501
HNGEV V+ + T T++ SAG G +++W
Sbjct: 305 HNGEVWSVSWNLTGTILSSAGDDGKVRLW 333
>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
Length = 349
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 473 HNGEVVGVACDSTNTLMISAGYHGDIKVW 501
HNGEV V+ + T T++ SAG G +++W
Sbjct: 303 HNGEVWSVSWNLTGTILSSAGDDGKVRLW 331
>pdb|1U4C|A Chain A, Structure Of Spindle Checkpoint Protein Bub3
pdb|1U4C|B Chain B, Structure Of Spindle Checkpoint Protein Bub3
Length = 349
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 39/67 (58%), Gaps = 3/67 (4%)
Query: 227 VTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSA 286
V ++ FS + L +G S G+IS WNL+ R+ + ++++++ + ++ +L A
Sbjct: 254 VNSIEFSPRHKFLYTAG-SDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLA 310
Query: 287 SADNSIK 293
++D++ K
Sbjct: 311 TSDDTFK 317
>pdb|2I3T|A Chain A, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|C Chain C, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|E Chain E, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|G Chain G, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
Length = 341
Score = 30.0 bits (66), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 39/67 (58%), Gaps = 3/67 (4%)
Query: 227 VTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSA 286
V ++ FS + L +G S G+IS WNL+ R+ + ++++++ + ++ +L A
Sbjct: 254 VNSIEFSPRHKFLYTAG-SDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLA 310
Query: 287 SADNSIK 293
++D++ K
Sbjct: 311 TSDDTFK 317
>pdb|1YFQ|A Chain A, High Resolution S. Cerevisiae Bub3 Mitotic Checkpoint
Protein
Length = 342
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 39/67 (58%), Gaps = 3/67 (4%)
Query: 227 VTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSA 286
V ++ FS + L +G S G+IS WNL+ R+ + ++++++ + ++ +L A
Sbjct: 254 VNSIEFSPRHKFLYTAG-SDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLA 310
Query: 287 SADNSIK 293
++D++ K
Sbjct: 311 TSDDTFK 317
>pdb|2I3S|A Chain A, Bub3 Complex With Bub1 Glebs Motif
pdb|2I3S|C Chain C, Bub3 Complex With Bub1 Glebs Motif
pdb|2I3S|E Chain E, Bub3 Complex With Bub1 Glebs Motif
Length = 349
Score = 30.0 bits (66), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 39/67 (58%), Gaps = 3/67 (4%)
Query: 227 VTALAFSSDGQPLLASGASSGVISIWNLEKRRLQSVIREAHDNAIISLHFFANEPVLMSA 286
V ++ FS + L +G S G+IS WNL+ R+ + ++++++ + ++ +L A
Sbjct: 254 VNSIEFSPRHKFLYTAG-SDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLA 310
Query: 287 SADNSIK 293
++D++ K
Sbjct: 311 TSDDTFK 317
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,864,944
Number of Sequences: 62578
Number of extensions: 1048361
Number of successful extensions: 2938
Number of sequences better than 100.0: 96
Number of HSP's better than 100.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 1964
Number of HSP's gapped (non-prelim): 650
length of query: 907
length of database: 14,973,337
effective HSP length: 108
effective length of query: 799
effective length of database: 8,214,913
effective search space: 6563715487
effective search space used: 6563715487
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)